Phyre 2 alignment of P45766 with c3ivpD_

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Job Description | P45766
Confidence | 22.83% | Date | Thu Jan 5 12:03:41 GMT 2012
Rank | 198 | Aligned Residues | 54
% Identity | 13% | Template | c3ivpD_
PDB info | PDB header:dna binding protein | Chain: D: PDB Molecule:putative transposon-related dna-binding protein; | PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
Resolution | 2.02 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 237 | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | W | F | S | I | V | R | W | T | L | F | A | M | L | N | A | E | E | M | G | I | N | S | Q | N | V | D | E | K | A | A | N | P | A | T | P | D | M | A | H | L | L | G | K | E | G | D | Y | G | K | D | L | K | L | D | N | K | W | A | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | A | R | K | K | Q | G | L | T | R | E | Q | V | . | . | G | A | X | I | E | I | D | P | R | Y | L | T | N | I | E | N | K | G | Q | H | P | S | L | Q | V | L | Y | . | . | . | . | D | L | V | S | L | L | N | V | S | V | D | E | F | F
Template Known Secondary structure |  |  |  |  |  |  | T | T |  |  |  |  |  |  | . | . |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  | T |  |  | S |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . |  |  | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . |  |  |  |  | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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