Phyre 2 Results for P45766

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Email | l.a.kelley@imperial.ac.uk
Description | P45766
Date | Thu Jan 5 12:03:41 GMT 2012
Unique Job ID | e6795bd6e3952764

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2vhaB_
Top template information
PDB header:transport protein Chain: B: PDB Molecule:periplasmic binding transport protein; PDBTitle: debp
Confidence and coverage
Confidence: | 100.0% | Coverage: | 72%
246 residues ( 72% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | K | M | M | I | A | T | L | A | A | A | S | V | L | L | A | V | A | N | Q | A | X | A | G | A | T | L | D | A | V | Q | K | K | G | F | V | Q | C | G | I | S | D | G | L | P | G | F | S | Y | A | D | A | D | G | K | F | S | G | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | D | V | D | I | C | R | G | V | A | A | A | V | F | G | D | D | T | K | V | K | Y | T | P | L | T | A | K | E | R | F | T | A | L | Q | S | G | E | V | D | L | L | S | R | N | T | T | W | T | S | S | R | D | A | G | M | G | M | A | F | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | G | V | T | Y | Y | D | G | I | G | F | L | T | H | D | K | A | G | L | K | S | A | K | E | L | D | G | A | T | V | C | I | Q | A | G | T | D | T | E | L | N | V | A | D | Y | F | K | A | N | N | M | K | Y | T | P | V | T | F | D | R | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | D | E | S | A | K | A | L | E | S | G | R | C | D | T | L | A | S | D | Q | S | Q | L | Y | A | L | R | I | K | L | S | N | P | A | E | W | I | V | L | P | E | V | I | S | K | E | P | L | G | P | V | V | R | R | G | D | D | E | W | F | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | I | V | R | W | T | L | F | A | M | L | N | A | E | E | M | G | I | N | S | Q | N | V | D | E | K | A | A | N | P | A | T | P | D | M | A | H | L | L | G | K | E | G | D | Y | G | K | D | L | K | L | D | N | K | W | A | Y | N | I | I | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | .
Sequence |  | Q | V | G | N | Y | S | E | I | F | E | R | N | V | G | S | E | S | P | L | K | I | K | R | G | Q | N | N | L | W | N | N | G | G | I | Q | Y | A | P | P | V | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  | ? |  |  |  | ? |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2vhaB_ |

### PDB 2vha chain B

Region: 21 - 318
Aligned: 246
Modelled: 246
Confidence: 100.0%
Identity: 26%
PDB header:transport protein
Chain: B: PDB Molecule:periplasmic binding transport protein;
PDBTitle: debp

Phyre2
2 |
| c2ylnA_ |

### PDB 2yln chain A

Region: 22 - 320
Aligned: 239
Modelled: 239
Confidence: 100.0%
Identity: 23%
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein,
PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation

Phyre2
3 |
| c3hv1A_ |

### PDB 3hv1 chain A

Region: 19 - 332
Aligned: 255
Modelled: 250
Confidence: 100.0%
Identity: 20%
PDB header:transport protein
Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate
PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus

Phyre2
4 |
| c2v25B_ |

### PDB 2v25 chain B

Region: 27 - 313
Aligned: 228
Modelled: 237
Confidence: 100.0%
Identity: 25%
PDB header:receptor
Chain: B: PDB Molecule:major cell-binding factor;
PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate

Phyre2
5 |
| c3k4uA_ |

### PDB 3k4u chain A

Region: 34 - 319
Aligned: 230
Modelled: 234
Confidence: 100.0%
Identity: 22%
PDB header:transport protein
Chain: A: PDB Molecule:binding component of abc transporter;
PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine

Phyre2
6 |
| c2o1mB_ |

### PDB 2o1m chain B

Region: 33 - 315
Aligned: 224
Modelled: 233
Confidence: 100.0%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:probable amino-acid abc transporter
PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572

Phyre2
7 |
| c1xt8B_ |

### PDB 1xt8 chain B

Region: 22 - 322
Aligned: 243
Modelled: 243
Confidence: 100.0%
Identity: 25%
PDB header:transport protein
Chain: B: PDB Molecule:putative amino-acid transporter periplasmic solute-binding
PDBTitle: crystal structure of cysteine-binding protein from campylobacter2 jejuni at 2.0 a resolution

Phyre2
8 |
| c3kbrA_ |

### PDB 3kbr chain A

Region: 25 - 313
Aligned: 229
Modelled: 238
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:cyclohexadienyl dehydratase;
PDBTitle: the crystal structure of cyclohexadienyl dehydratase precursor from2 pseudomonas aeruginosa pa01

Phyre2
9 |
| c2ieeB_ |

### PDB 2iee chain B

Region: 29 - 317
Aligned: 230
Modelled: 238
Confidence: 100.0%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:probable abc transporter extracellular-binding
PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574.

Phyre2
10 |
| d2a5sa1 |

### PDB 2a5s chain A domain 1

Region: 31 - 314
Aligned: 228
Modelled: 234
Confidence: 100.0%
Identity: 14%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2
11 |
| c3kzgB_ |

### PDB 3kzg chain B

Region: 36 - 313
Aligned: 219
Modelled: 227
Confidence: 100.0%
Identity: 17%
PDB header:transport protein
Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding
PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila

Phyre2
12 |
| c3g41A_ |

### PDB 3g41 chain A

Region: 33 - 320
Aligned: 230
Modelled: 237
Confidence: 100.0%
Identity: 17%
PDB header:transport protein
Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae

Phyre2
13 |
| c2yjpB_ |

### PDB 2yjp chain B

Region: 26 - 315
Aligned: 232
Modelled: 240
Confidence: 100.0%
Identity: 28%
PDB header:transport protein
Chain: B: PDB Molecule:putative abc transporter, periplasmic binding protein,
PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae

Phyre2
14 |
| c2q89A_ |

### PDB 2q89 chain A

Region: 24 - 323
Aligned: 246
Modelled: 250
Confidence: 100.0%
Identity: 20%
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter amino acid-binding protein;
PDBTitle: crystal structure of ehub in complex with hydroxyectoine

Phyre2
15 |
| c3r39A_ |

### PDB 3r39 chain A

Region: 31 - 316
Aligned: 229
Modelled: 234
Confidence: 100.0%
Identity: 17%
PDB header:transport protein
Chain: A: PDB Molecule:putative periplasmic binding protein;
PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica

Phyre2
16 |
| d1xt8a1 |

### PDB 1xt8 chain A domain 1

Region: 26 - 314
Aligned: 231
Modelled: 239
Confidence: 100.0%
Identity: 26%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2
17 |
| c3i6vA_ |

### PDB 3i6v chain A

Region: 36 - 319
Aligned: 217
Modelled: 229
Confidence: 100.0%
Identity: 18%
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein;
PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine

Phyre2
18 |
| d1hsla_ |

### PDB 1hsl chain A

Region: 35 - 316
Aligned: 226
Modelled: 232
Confidence: 100.0%
Identity: 16%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2
19 |
| c2q2aD_ |

### PDB 2q2a chain D

Region: 19 - 320
Aligned: 237
Modelled: 237
Confidence: 100.0%
Identity: 25%
PDB header:transport protein
Chain: D: PDB Molecule:artj;
PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus

Phyre2
20 |
| d1lsta_ |

### PDB 1lst chain A

Region: 35 - 316
Aligned: 226
Modelled: 232
Confidence: 100.0%
Identity: 19%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2vhaB_ |
|  | 100.0 | 26 | PDB header:transport protein Chain: B: PDB Molecule:periplasmic binding transport protein; PDBTitle: debp
2 | c2ylnA_ |
|  | 100.0 | 23 | PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation
3 | c3hv1A_ |
|  | 100.0 | 20 | PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus
4 | c2v25B_ |
|  | 100.0 | 25 | PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate
5 | c3k4uA_ |
|  | 100.0 | 22 | PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine
6 | c2o1mB_ |
|  | 100.0 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572
7 | c1xt8B_ |
|  | 100.0 | 25 | PDB header:transport protein Chain: B: PDB Molecule:putative amino-acid transporter periplasmic solute-binding PDBTitle: crystal structure of cysteine-binding protein from campylobacter2 jejuni at 2.0 a resolution
8 | c3kbrA_ |
|  | 100.0 | 17 | PDB header:lyase Chain: A: PDB Molecule:cyclohexadienyl dehydratase; PDBTitle: the crystal structure of cyclohexadienyl dehydratase precursor from2 pseudomonas aeruginosa pa01
9 | c2ieeB_ |
|  | 100.0 | 20 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574.
10 | d2a5sa1 |
|  | 100.0 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
11 | c3kzgB_ |
|  | 100.0 | 17 | PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila
12 | c3g41A_ |
|  | 100.0 | 17 | PDB header:transport protein Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae
13 | c2yjpB_ |
|  | 100.0 | 28 | PDB header:transport protein Chain: B: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae
14 | c2q89A_ |
|  | 100.0 | 20 | PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter amino acid-binding protein; PDBTitle: crystal structure of ehub in complex with hydroxyectoine
15 | c3r39A_ |
|  | 100.0 | 17 | PDB header:transport protein Chain: A: PDB Molecule:putative periplasmic binding protein; PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica
16 | d1xt8a1 |
|  | 100.0 | 26 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
17 | c3i6vA_ |
|  | 100.0 | 18 | PDB header:transport protein Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein; PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine
18 | d1hsla_ |
|  | 100.0 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
19 | c2q2aD_ |
|  | 100.0 | 25 | PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus
20 | d1lsta_ |
|  | 100.0 | 19 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
21 | c3h7mA_ |
| not modelled | 100.0 | 22 | PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of a histidine kinase sensor domain with2 similarity to periplasmic binding proteins
22 | d1pb7a_ |
| not modelled | 100.0 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
23 | c2rc9A_ |
| not modelled | 100.0 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution
24 | c2y7iB_ |
| not modelled | 100.0 | 20 | PDB header:arginine-binding protein Chain: B: PDB Molecule:stm4351; PDBTitle: structural basis for high arginine specificity in salmonella2 typhimurium periplasmic binding protein stm4351.
25 | c3delC_ |
| not modelled | 100.0 | 17 | PDB header:protein binding, transport protein Chain: C: PDB Molecule:arginine binding protein; PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis
26 | c3mplA_ |
| not modelled | 100.0 | 18 | PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e)
27 | d1wdna_ |
| not modelled | 100.0 | 22 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
28 | d1mqia_ |
| not modelled | 100.0 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
29 | c2xx7B_ |
| not modelled | 100.0 | 16 | PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 2; PDBTitle: crystal structure of 1-(4-(1-pyrrolidinylcarbonyl)phenyl)-3-2 (trifluoromethyl)-4,5,6,7-tetrahydro-1h-indazole in complex with3 the ligand binding domain of the rat glua2 receptor and glutamate4 at 2.2a resolution.
30 | d1ii5a_ |
| not modelled | 100.0 | 25 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
31 | c2pyyB_ |
| not modelled | 99.9 | 19 | PDB header:transport protein Chain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue; PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate
32 | d1s50a1 |
| not modelled | 99.9 | 11 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
33 | c1yaeB_ |
| not modelled | 99.9 | 11 | PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: structure of the kainate receptor subunit glur6 agonist binding domain2 complexed with domoic acid
34 | d2f34a1 |
| not modelled | 99.9 | 13 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
35 | c2v3tA_ |
| not modelled | 99.9 | 12 | PDB header:receptor Chain: A: PDB Molecule:glutamate receptor delta-2 subunit synonym PDBTitle: structure of the ligand-binding core of the ionotropic2 glutamate receptor-like glurdelta2 in the apo form
36 | c3kg2A_ |
| not modelled | 99.8 | 17 | PDB header:membrane protein, transport protein Chain: A: PDB Molecule:glutamate receptor 2; PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775
37 | c3uifA_ |
| not modelled | 99.5 | 16 | PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt
38 | c3e4rA_ |
| not modelled | 99.5 | 14 | PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes
39 | c3ix1B_ |
| not modelled | 99.4 | 16 | PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
40 | c3ix1A_ |
| not modelled | 99.4 | 16 | PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
41 | c3n5lA_ |
| not modelled | 99.4 | 16 | PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution
42 | c2x26A_ |
| not modelled | 99.4 | 15 | PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli
43 | c3hn0A_ |
| not modelled | 99.2 | 14 | PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution
44 | c3un6A_ |
| not modelled | 99.1 | 13 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound
45 | c3qslA_ |
| not modelled | 99.1 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50
46 | c2de4B_ |
| not modelled | 99.1 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid
47 | c3tmgA_ |
| not modelled | 99.1 | 13 | PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi
48 | c3tqwA_ |
| not modelled | 99.0 | 16 | PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
49 | d1xs5a_ |
| not modelled | 99.0 | 15 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
50 | c2x7pA_ |
| not modelled | 99.0 | 11 | PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold
51 | d1us5a_ |
| not modelled | 99.0 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
52 | c3k2dA_ |
| not modelled | 98.9 | 14 | PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus
53 | c3gxaA_ |
| not modelled | 98.9 | 14 | PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946
54 | c3l6gA_ |
| not modelled | 98.9 | 13 | PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation
55 | c2g29A_ |
| not modelled | 98.8 | 14 | PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803
56 | c3ir1F_ |
| not modelled | 98.7 | 13 | PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis
57 | d1p99a_ |
| not modelled | 98.7 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
58 | c1p99A_ |
| not modelled | 98.7 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus
59 | c2f5xC_ |
| not modelled | 98.6 | 11 | PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd
60 | c2i4cA_ |
| not modelled | 98.6 | 12 | PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium
61 | c2dvzA_ |
| not modelled | 98.5 | 14 | PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter
62 | c3b50A_ |
| not modelled | 98.5 | 13 | PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac.
63 | c2pfzA_ |
| not modelled | 98.5 | 15 | PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid
64 | c2qpqC_ |
| not modelled | 98.3 | 13 | PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis
65 | c3gyyC_ |
| not modelled | 98.2 | 14 | PDB header:transport protein Chain: C: PDB Molecule:periplasmic substrate binding protein; PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state
66 | c2hpgB_ |
| not modelled | 98.2 | 11 | PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein
67 | d2czla1 |
| not modelled | 98.1 | 12 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
68 | c2pfyA_ |
| not modelled | 98.1 | 17 | PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid
69 | d2nxoa1 |
| not modelled | 98.1 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
70 | c2vpnB_ |
| not modelled | 98.1 | 15 | PDB header:transport Chain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata
71 | c2zzxD_ |
| not modelled | 98.1 | 17 | PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate
72 | c3fxbB_ |
| not modelled | 98.1 | 13 | PDB header:transport protein Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit; PDBTitle: crystal structure of the ectoine-binding protein ueha
73 | c2vd3B_ |
| not modelled | 98.0 | 14 | PDB header:transferase Chain: B: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the structure of histidine inhibited hisg from2 methanobacterium thermoautotrophicum
74 | c2hzkB_ |
| not modelled | 97.9 | 11 | PDB header:ligand binding, transport protein Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form
75 | d1zbma1 |
| not modelled | 97.8 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
76 | c2rejA_ |
| not modelled | 97.8 | 20 | PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
77 | d1h3da1 |
| not modelled | 97.7 | 12 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
78 | d1r9la_ |
| not modelled | 97.3 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
79 | c3eq1A_ |
| not modelled | 97.3 | 19 | PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution
80 | c1nh7A_ |
| not modelled | 97.0 | 15 | PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: atp phosphoribosyltransferase (atp-prtase) from mycobacterium2 tuberculosis
81 | c1q1kA_ |
| not modelled | 97.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: structure of atp-phosphoribosyltransferase from e. coli complexed with2 pr-atp
82 | d1amfa_ |
| not modelled | 97.0 | 12 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
83 | d1h76a1 |
| not modelled | 96.9 | 13 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
84 | c2ql3G_ |
| not modelled | 96.8 | 15 | PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1
85 | c1al3A_ |
| not modelled | 96.8 | 11 | PDB header:transcription regulation Chain: A: PDB Molecule:cys regulon transcriptional activator cysb; PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes
86 | d1al3a_ |
| not modelled | 96.8 | 11 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
87 | d1nh8a1 |
| not modelled | 96.8 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
88 | d1pdaa1 |
| not modelled | 96.8 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
89 | c3fd3A_ |
| not modelled | 96.8 | 13 | PDB header:transcription regulator Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein; PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58.
90 | c2ypnA_ |
| not modelled | 96.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase
91 | c3r6uA_ |
| not modelled | 96.7 | 16 | PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
92 | d1ryoa_ |
| not modelled | 96.7 | 13 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
93 | d1atga_ |
| not modelled | 96.1 | 11 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
94 | c3pppA_ |
| not modelled | 95.9 | 13 | PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
95 | c2h5yC_ |
| not modelled | 95.9 | 8 | PDB header:metal transport Chain: C: PDB Molecule:molybdate-binding periplasmic protein; PDBTitle: crystallographic structure of the molybdate-binding protein of2 xanthomonas citri at 1.7 ang resolution bound to molybdate
96 | d1eh3a_ |
| not modelled | 95.9 | 13 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
97 | d2fyia1 |
| not modelled | 95.8 | 12 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
98 | d1dtza1 |
| not modelled | 95.7 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
99 | c3o66A_ |
| not modelled | 95.6 | 12 | PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter
100 | c3ho7A_ |
| not modelled | 95.6 | 9 | PDB header:transcription Chain: A: PDB Molecule:oxyr; PDBTitle: crystal structure of oxyr from porphyromonas gingivalis
101 | d2hava1 |
| not modelled | 95.5 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
102 | d2b6da1 |
| not modelled | 95.4 | 9 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
103 | c3oxnD_ |
| not modelled | 95.2 | 10 | PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus
104 | d1ce2a1 |
| not modelled | 95.2 | 10 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
105 | d1sw5a_ |
| not modelled | 94.8 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
106 | d1ieja_ |
| not modelled | 94.8 | 12 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
107 | d1jnfa1 |
| not modelled | 94.7 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
108 | d1i6aa_ |
| not modelled | 94.6 | 11 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
109 | c2hxrA_ |
| not modelled | 94.5 | 9 | PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator cynr; PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism
110 | d1b1xa1 |
| not modelled | 94.4 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
111 | c2vd2A_ |
| not modelled | 94.4 | 12 | PDB header:transferase Chain: A: PDB Molecule:atp phosphoribosyltransferase; PDBTitle: the crystal structure of hisg from b. subtilis
112 | d2ozza1 |
| not modelled | 94.3 | 19 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
113 | c3n6uA_ |
| not modelled | 93.9 | 9 | PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate
114 | d1sbpa_ |
| not modelled | 93.4 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
115 | d1cb6a2 |
| not modelled | 93.2 | 14 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Transferrin
116 | c3muqB_ |
| not modelled | 92.6 | 12 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633
117 | c3fzvC_ |
| not modelled | 92.2 | 9 | PDB header:transcription regulator Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa
118 | c3lr1A_ |
| not modelled | 92.2 | 9 | PDB header:transport protein Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate- PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens
119 | c3jv9B_ |
| not modelled | 92.1 | 9 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis
120 | c2h9qC_ |
| not modelled | 91.9 | 11 | PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h)

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0