BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (72 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 145 3e-34 UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 68 1e-10 UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serrati... 62 6e-09 UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkhol... 53 4e-06 UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaprot... 48 1e-04 UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholde... 43 0.003 UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 42 0.005 UniRef50_Q7N9W7 Similar to unknown protein YiiF of Escherichia c... 42 0.006 UniRef50_B8GTR7 Putative transcriptional regulator, CopG family ... 42 0.007 UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphing... 41 0.011 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 Query: 61 GVEYQRKLREEW 72 GVEYQRKLREEW Sbjct: 61 GVEYQRKLREEW 72 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G EED Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EED 70 Query: 61 GVEYQRKLREEW 72 GVEYQRKLREEW Sbjct: 71 GVEYQRKLREEW 82 >UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G7S2_SERP5 Length = 69 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 48/68 (70%) Query: 5 LLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGVEY 64 ++DL E ++QLD+L+ R++PRA+++R+AV +YL+ ++ G+W G DGV+Y Sbjct: 1 MIDLPEEDLRQLDNLKNIRHVPRAEIIRQAVSRYLVVNRVDDPSNAFGLWSGVLGDGVDY 60 Query: 65 QRKLREEW 72 + +LREEW Sbjct: 61 ENQLREEW 68 >UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=A0AZK3_BURCH Length = 72 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 6/75 (8%) Query: 1 MGRILLDLSNEVIKQLDDLEV---QRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGC 57 M RIL+DLS+ QLD+L V ++ PRA ++R+A+D Y+ V G+W+ Sbjct: 1 MSRILVDLSD---GQLDELAVIVETQHRPRAAIIRDAIDAYIALNKHRLADDVFGLWKDR 57 Query: 58 EEDGVEYQRKLREEW 72 DG+ YQ +LR EW Sbjct: 58 TVDGLAYQEELRSEW 72 >UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaproteobacteria RepID=Q2RVI3_RHORT Length = 71 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGV 62 R L+D+S+ I+ LD L + RA L+R A+D YL + G+W + DG+ Sbjct: 2 RALVDMSDAQIEALDTLAKRVGQSRAALIRAAIDDYLDRHHREQVADGFGLWGKRKVDGL 61 Query: 63 EYQRKLREEW 72 YQ K R EW Sbjct: 62 AYQEKARSEW 71 >UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholderia sp. 383 RepID=Q394Q1_BURS3 Length = 121 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M RI +DLSN+ L + +++ A+++R+A+D Y+ Q +T +V G+W+G + Sbjct: 53 MIRIPVDLSNDQHAALTRIATRQSSSPAEIIRDAIDAYIAQQDRTLADNVFGLWKGRD-- 110 Query: 61 GVEYQRKLREEW 72 V Q LR EW Sbjct: 111 -VVDQEDLRSEW 121 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQG 56 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG 56 >UniRef50_Q7N9W7 Similar to unknown protein YiiF of Escherichia coli n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N9W7_PHOLL Length = 76 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 1 MGRILLDLSNEVIKQLDDLE-VQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEE 59 M I ++L E IK+ + +E + RA R AVD YL SV G+W + Sbjct: 4 MVEININLLEETIKKREIVEKCSPDKSRATQSRRAVDTYLDANIPEQNNSVFGLWGDKKL 63 Query: 60 DGVEYQRKLREEW 72 DG++YQ KLREEW Sbjct: 64 DGLKYQGKLREEW 76 >UniRef50_B8GTR7 Putative transcriptional regulator, CopG family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTR7_THISH Length = 73 Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVP-GIWQGCEEDG 61 R ++DL +E ++ + L + + +A+ +R AV YL + + S G+W+G EE G Sbjct: 2 RTVVDLPDEELQAIKALAKREKISQAEAIRRAVRAYLHARPAPDKESPAFGLWEGREE-G 60 Query: 62 VEYQRKLREEW 72 ++YQ LR+EW Sbjct: 61 IQYQDTLRDEW 71 >UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G928_NOVAD Length = 82 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTAR--TSVPGIWQGCE 58 M RIL DL +E I++LD RA L+REAV +L+ S + G+W + Sbjct: 1 MTRILADLPDEDIEKLDARAAALGKSRAALVREAVKLFLVQGSSSNDWIDRFAGLWAERD 60 Query: 59 E--DGVEYQRKLREE 71 + D V YQR +RE+ Sbjct: 61 DIPDSVAYQRAIRED 75 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 94 2e-18 UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serrati... 91 1e-17 UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 86 5e-16 UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkhol... 84 2e-15 UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaprot... 84 2e-15 Sequences not found previously or not previously below threshold: UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 67 2e-10 UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholde... 60 3e-08 UniRef50_A4BM79 Putative uncharacterized protein n=1 Tax=Nitroco... 54 1e-06 UniRef50_C4K0X2 Putative uncharacterized protein n=4 Tax=spotted... 54 2e-06 UniRef50_Q7N9W7 Similar to unknown protein YiiF of Escherichia c... 54 2e-06 UniRef50_B8IY13 CopG domain protein DNA-binding domain protein n... 53 3e-06 UniRef50_Q7U9N9 Putative uncharacterized protein n=3 Tax=Synecho... 53 4e-06 UniRef50_B8GTR7 Putative transcriptional regulator, CopG family ... 50 2e-05 UniRef50_B9B6V1 Helix-turn-helix protein, CopG n=4 Tax=Burkholde... 49 5e-05 UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphing... 45 5e-04 UniRef50_Q2NCL5 Putative uncharacterized protein n=1 Tax=Erythro... 41 0.012 UniRef50_D2RG21 Putative transcriptional regulator, CopG family ... 41 0.014 UniRef50_Q7NGD3 Gsr3238 protein n=1 Tax=Gloeobacter violaceus Re... 39 0.051 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 93.6 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 Query: 61 GVEYQRKLREEW 72 GVEYQRKLREEW Sbjct: 61 GVEYQRKLREEW 72 >UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G7S2_SERP5 Length = 69 Score = 90.5 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 48/68 (70%) Query: 5 LLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGVEY 64 ++DL E ++QLD+L+ R++PRA+++R+AV +YL+ ++ G+W G DGV+Y Sbjct: 1 MIDLPEEDLRQLDNLKNIRHVPRAEIIRQAVSRYLVVNRVDDPSNAFGLWSGVLGDGVDY 60 Query: 65 QRKLREEW 72 + +LREEW Sbjct: 61 ENQLREEW 68 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 85.5 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G EED Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EED 70 Query: 61 GVEYQRKLREEW 72 GVEYQRKLREEW Sbjct: 71 GVEYQRKLREEW 82 >UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=A0AZK3_BURCH Length = 72 Score = 84.0 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M RIL+DLS+ + +L + ++ PRA ++R+A+D Y+ V G+W+ D Sbjct: 1 MSRILVDLSDGQLDELAVIVETQHRPRAAIIRDAIDAYIALNKHRLADDVFGLWKDRTVD 60 Query: 61 GVEYQRKLREEW 72 G+ YQ +LR EW Sbjct: 61 GLAYQEELRSEW 72 >UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaproteobacteria RepID=Q2RVI3_RHORT Length = 71 Score = 83.6 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGV 62 R L+D+S+ I+ LD L + RA L+R A+D YL + G+W + DG+ Sbjct: 2 RALVDMSDAQIEALDTLAKRVGQSRAALIRAAIDDYLDRHHREQVADGFGLWGKRKVDGL 61 Query: 63 EYQRKLREEW 72 YQ K R EW Sbjct: 62 AYQEKARSEW 71 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G E Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EVV 59 Query: 61 GVEYQRKLREE 71 GV+ Q K +E Sbjct: 60 GVDDQCKEHKE 70 >UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholderia sp. 383 RepID=Q394Q1_BURS3 Length = 121 Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M RI +DLSN+ L + +++ A+++R+A+D Y+ Q +T +V G+W+G + Sbjct: 53 MIRIPVDLSNDQHAALTRIATRQSSSPAEIIRDAIDAYIAQQDRTLADNVFGLWKGRD-- 110 Query: 61 GVEYQRKLREEW 72 V Q LR EW Sbjct: 111 -VVDQEDLRSEW 121 >UniRef50_A4BM79 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BM79_9GAMM Length = 72 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGV 62 R ++DL + ++ + L + + +A+ +R AV YL G+W DG+ Sbjct: 2 RTIVDLPEKELQAIKALAKRERISQAEAVRRAVRHYLDTHPPQPTEEAFGVWANR-CDGL 60 Query: 63 EYQRKLREEW 72 YQ LR+EW Sbjct: 61 SYQEALRQEW 70 >UniRef50_C4K0X2 Putative uncharacterized protein n=4 Tax=spotted fever group RepID=C4K0X2_RICPU Length = 74 Score = 53.6 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTART--SVPGIWQGCEED 60 R ++++++ IK LD L + R ++ +A+ Y+ + + + G+W+ D Sbjct: 2 RTIINIADSQIKILDKLSK-NKISRDKIIGQALTSYIASNDHNNKAFENAFGLWKDKNLD 60 Query: 61 GVEYQRKLREEW 72 VEYQ KL EW Sbjct: 61 SVEYQAKLCNEW 72 >UniRef50_Q7N9W7 Similar to unknown protein YiiF of Escherichia coli n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N9W7_PHOLL Length = 76 Score = 53.6 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEV-QRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEE 59 M I ++L E IK+ + +E + RA R AVD YL SV G+W + Sbjct: 4 MVEININLLEETIKKREIVEKCSPDKSRATQSRRAVDTYLDANIPEQNNSVFGLWGDKKL 63 Query: 60 DGVEYQRKLREEW 72 DG++YQ KLREEW Sbjct: 64 DGLKYQGKLREEW 76 >UniRef50_B8IY13 CopG domain protein DNA-binding domain protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IY13_METNO Length = 72 Score = 53.2 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 6 LDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQS-QTARTSVPGIWQGCEEDGVEY 64 +++ E + LD + + + R L+R + ++ + + S GIW+ DG+EY Sbjct: 5 IEILPEQAEALDQIAAREHTSRDALVRTLIADFVAQHAPKPDIQSFFGIWRERGVDGLEY 64 Query: 65 QRKLREEW 72 Q +LR EW Sbjct: 65 QERLRAEW 72 >UniRef50_Q7U9N9 Putative uncharacterized protein n=3 Tax=Synechococcus RepID=Q7U9N9_SYNPX Length = 82 Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGV 62 R ++DL + LD QR L RA +REA+ +L V G+W+ D + Sbjct: 12 RTIIDLPEDERAVLDAHCRQRGLSRAAAIREALHLWL-QHQHPRSADVFGLWRDRNADAL 70 Query: 63 EYQRKLREEW 72 + +LR+EW Sbjct: 71 TLESELRQEW 80 >UniRef50_B8GTR7 Putative transcriptional regulator, CopG family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTR7_THISH Length = 73 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTS-VPGIWQGCEEDG 61 R ++DL +E ++ + L + + +A+ +R AV YL + + S G+W+G EE G Sbjct: 2 RTVVDLPDEELQAIKALAKREKISQAEAIRRAVRAYLHARPAPDKESPAFGLWEGREE-G 60 Query: 62 VEYQRKLREEW 72 ++YQ LR+EW Sbjct: 61 IQYQDTLRDEW 71 >UniRef50_B9B6V1 Helix-turn-helix protein, CopG n=4 Tax=Burkholderia multivorans RepID=B9B6V1_9BURK Length = 81 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M RI ++L V+ +L + + ++R+A+ +++ + T V G+W+ Sbjct: 1 MRRISINLPATVVAELTRIAESEHRALDAVIRDAIGRHVARIGEARSTDVFGLWRHRARC 60 Query: 61 GVEYQRKLREEW 72 G++YQR R +W Sbjct: 61 GIDYQRDARADW 72 >UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G928_NOVAD Length = 82 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLIN--QSQTARTSVPGIWQGCE 58 M RIL DL +E I++LD RA L+REAV +L+ S G+W + Sbjct: 1 MTRILADLPDEDIEKLDARAAALGKSRAALVREAVKLFLVQGSSSNDWIDRFAGLWAERD 60 Query: 59 E--DGVEYQRKLREE 71 + D V YQR +RE+ Sbjct: 61 DIPDSVAYQRAIRED 75 >UniRef50_Q2NCL5 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NCL5_ERYLH Length = 71 Score = 41.2 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 24/42 (57%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQ 42 M RIL+DL ++ I+ LD + RA +REAV YL Q Sbjct: 1 MSRILIDLPDDDIRSLDAMARANGRSRAAEMREAVALYLRRQ 42 >UniRef50_D2RG21 Putative transcriptional regulator, CopG family n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RG21_ARCPR Length = 126 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 25/44 (56%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQ 44 M R + + ++ K LDDL + + R++++REA+ YL + Sbjct: 1 MRRFGVSIPEDLAKALDDLAEKLGVSRSEVVREALRTYLAEHTH 44 >UniRef50_Q7NGD3 Gsr3238 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NGD3_GLOVI Length = 78 Score = 38.9 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQ----TARTSVPGIWQGCE 58 + ++ +S+ V ++ + L + + R++L A+ ++ A +V G G Sbjct: 2 KAVVSISSPVFREAELLAKRLGISRSELYSRAIKAFVEVHKHQGITEALDAVFGEQPGAL 61 Query: 59 EDGVEYQRKL---REEW 72 E G+ Y + RE+W Sbjct: 62 EPGLAYLQFASLKREDW 78 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkhol... 87 2e-16 UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobact... 85 5e-16 UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Esche... 82 4e-15 UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serrati... 82 6e-15 UniRef50_Q7N9W7 Similar to unknown protein YiiF of Escherichia c... 82 8e-15 UniRef50_C4K0X2 Putative uncharacterized protein n=4 Tax=spotted... 81 1e-14 UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaprot... 81 1e-14 UniRef50_A4BM79 Putative uncharacterized protein n=1 Tax=Nitroco... 80 2e-14 UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholde... 79 3e-14 UniRef50_B8IY13 CopG domain protein DNA-binding domain protein n... 75 5e-13 UniRef50_Q7U9N9 Putative uncharacterized protein n=3 Tax=Synecho... 75 5e-13 UniRef50_B9B6V1 Helix-turn-helix protein, CopG n=4 Tax=Burkholde... 75 8e-13 UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobact... 70 2e-11 UniRef50_B8GTR7 Putative transcriptional regulator, CopG family ... 70 3e-11 UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphing... 64 2e-09 Sequences not found previously or not previously below threshold: UniRef50_Q2NCL5 Putative uncharacterized protein n=1 Tax=Erythro... 52 8e-06 UniRef50_D2RG21 Putative transcriptional regulator, CopG family ... 50 2e-05 UniRef50_A6DUJ7 Transcriptional regulator, CopG family protein n... 47 2e-04 UniRef50_D2ML47 Putative uncharacterized protein n=1 Tax=Candida... 45 6e-04 UniRef50_A8ZVF9 CopG domain protein DNA-binding domain protein n... 45 7e-04 UniRef50_A8GXR1 Ubiquinone/menaquinone biosynthesis methyltransf... 42 0.005 UniRef50_Q1NPS1 Helix-turn-helix protein, CopG n=1 Tax=delta pro... 42 0.007 UniRef50_A5G6A8 CopG domain protein DNA-binding domain protein n... 41 0.013 UniRef50_C6DME9 Antitoxin n=12 Tax=Mycobacterium tuberculosis co... 39 0.035 UniRef50_A9KFT6 Transcriptional regulator, CopG family n=6 Tax=C... 39 0.040 UniRef50_Q4UL23 Probable antitoxin of toxin-antitoxin system n=3... 39 0.045 UniRef50_Q7NGD3 Gsr3238 protein n=1 Tax=Gloeobacter violaceus Re... 39 0.050 UniRef50_Q1H065 Transcriptional regulator, CopG family n=4 Tax=P... 38 0.091 >UniRef50_A0AZK3 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=A0AZK3_BURCH Length = 72 Score = 86.6 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M RIL+DLS+ + +L + ++ PRA ++R+A+D Y+ V G+W+ D Sbjct: 1 MSRILVDLSDGQLDELAVIVETQHRPRAAIIRDAIDAYIALNKHRLADDVFGLWKDRTVD 60 Query: 61 GVEYQRKLREEW 72 G+ YQ +LR EW Sbjct: 61 GLAYQEELRSEW 72 >UniRef50_P0AFU6 Uncharacterized protein yiiF n=67 Tax=Enterobacteriaceae RepID=YIIF_ECOLI Length = 72 Score = 85.5 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED Sbjct: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 Query: 61 GVEYQRKLREEW 72 GVEYQRKLREEW Sbjct: 61 GVEYQRKLREEW 72 >UniRef50_B7LVF8 Putative transcriptional regulator n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LVF8_ESCF3 Length = 82 Score = 82.4 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G EED Sbjct: 12 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EED 70 Query: 61 GVEYQRKLREEW 72 GVEYQRKLREEW Sbjct: 71 GVEYQRKLREEW 82 >UniRef50_A8G7S2 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8G7S2_SERP5 Length = 69 Score = 82.0 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 48/68 (70%) Query: 5 LLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGVEY 64 ++DL E ++QLD+L+ R++PRA+++R+AV +YL+ ++ G+W G DGV+Y Sbjct: 1 MIDLPEEDLRQLDNLKNIRHVPRAEIIRQAVSRYLVVNRVDDPSNAFGLWSGVLGDGVDY 60 Query: 65 QRKLREEW 72 + +LREEW Sbjct: 61 ENQLREEW 68 >UniRef50_Q7N9W7 Similar to unknown protein YiiF of Escherichia coli n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N9W7_PHOLL Length = 76 Score = 81.6 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEV-QRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEE 59 M I ++L E IK+ + +E + RA R AVD YL SV G+W + Sbjct: 4 MVEININLLEETIKKREIVEKCSPDKSRATQSRRAVDTYLDANIPEQNNSVFGLWGDKKL 63 Query: 60 DGVEYQRKLREEW 72 DG++YQ KLREEW Sbjct: 64 DGLKYQGKLREEW 76 >UniRef50_C4K0X2 Putative uncharacterized protein n=4 Tax=spotted fever group RepID=C4K0X2_RICPU Length = 74 Score = 80.9 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTAR--TSVPGIWQGCEED 60 R ++++++ IK LD L + R ++ +A+ Y+ + + + G+W+ D Sbjct: 2 RTIINIADSQIKILDKLSK-NKISRDKIIGQALTSYIASNDHNNKAFENAFGLWKDKNLD 60 Query: 61 GVEYQRKLREEW 72 VEYQ KL EW Sbjct: 61 SVEYQAKLCNEW 72 >UniRef50_Q2RVI3 Helix-turn-helix protein, CopG n=4 Tax=Alphaproteobacteria RepID=Q2RVI3_RHORT Length = 71 Score = 80.9 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGV 62 R L+D+S+ I+ LD L + RA L+R A+D YL + G+W + DG+ Sbjct: 2 RALVDMSDAQIEALDTLAKRVGQSRAALIRAAIDDYLDRHHREQVADGFGLWGKRKVDGL 61 Query: 63 EYQRKLREEW 72 YQ K R EW Sbjct: 62 AYQEKARSEW 71 >UniRef50_A4BM79 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BM79_9GAMM Length = 72 Score = 80.1 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGV 62 R ++DL + ++ + L + + +A+ +R AV YL G+W DG+ Sbjct: 2 RTIVDLPEKELQAIKALAKRERISQAEAVRRAVRHYLDTHPPQPTEEAFGVWANR-CDGL 60 Query: 63 EYQRKLREEW 72 YQ LR+EW Sbjct: 61 SYQEALRQEW 70 >UniRef50_Q394Q1 Helix-turn-helix protein, CopG n=1 Tax=Burkholderia sp. 383 RepID=Q394Q1_BURS3 Length = 121 Score = 79.3 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M RI +DLSN+ L + +++ A+++R+A+D Y+ Q +T +V G+W+G + Sbjct: 53 MIRIPVDLSNDQHAALTRIATRQSSSPAEIIRDAIDAYIAQQDRTLADNVFGLWKGRD-- 110 Query: 61 GVEYQRKLREEW 72 V Q LR EW Sbjct: 111 -VVDQEDLRSEW 121 >UniRef50_B8IY13 CopG domain protein DNA-binding domain protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IY13_METNO Length = 72 Score = 75.5 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 4 ILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQ-SQTARTSVPGIWQGCEEDGV 62 +++ E + LD + + + R L+R + ++ + S GIW+ DG+ Sbjct: 3 TTIEILPEQAEALDQIAAREHTSRDALVRTLIADFVAQHAPKPDIQSFFGIWRERGVDGL 62 Query: 63 EYQRKLREEW 72 EYQ +LR EW Sbjct: 63 EYQERLRAEW 72 >UniRef50_Q7U9N9 Putative uncharacterized protein n=3 Tax=Synechococcus RepID=Q7U9N9_SYNPX Length = 82 Score = 75.5 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGV 62 R ++DL + LD QR L RA +REA+ +L V G+W+ D + Sbjct: 12 RTIIDLPEDERAVLDAHCRQRGLSRAAAIREALHLWL-QHQHPRSADVFGLWRDRNADAL 70 Query: 63 EYQRKLREEW 72 + +LR+EW Sbjct: 71 TLESELRQEW 80 >UniRef50_B9B6V1 Helix-turn-helix protein, CopG n=4 Tax=Burkholderia multivorans RepID=B9B6V1_9BURK Length = 81 Score = 74.7 bits (182), Expect = 8e-13, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M RI ++L V+ +L + + ++R+A+ +++ + T V G+W+ Sbjct: 1 MRRISINLPATVVAELTRIAESEHRALDAVIRDAIGRHVARIGEARSTDVFGLWRHRARC 60 Query: 61 GVEYQRKLREEW 72 G++YQR R +W Sbjct: 61 GIDYQRDARADW 72 >UniRef50_Q0SZ79 Uncharacterized protein yiiE n=54 Tax=Enterobacteriaceae RepID=YIIE_SHIF8 Length = 70 Score = 70.1 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M + L LS E IK+L+ L R + R+ +LREAV+QYL Q R + G +G E Sbjct: 1 MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQKG-EVV 59 Query: 61 GVEYQRKLREE 71 GV+ Q K +E Sbjct: 60 GVDDQCKEHKE 70 >UniRef50_B8GTR7 Putative transcriptional regulator, CopG family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTR7_THISH Length = 73 Score = 69.7 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTS-VPGIWQGCEEDG 61 R ++DL +E ++ + L + + +A+ +R AV YL + + S G+W+G EE G Sbjct: 2 RTVVDLPDEELQAIKALAKREKISQAEAIRRAVRAYLHARPAPDKESPAFGLWEGREE-G 60 Query: 62 VEYQRKLREEW 72 ++YQ LR+EW Sbjct: 61 IQYQDTLRDEW 71 >UniRef50_Q2G928 CopG-like DNA-binding protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G928_NOVAD Length = 82 Score = 63.5 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLIN--QSQTARTSVPGIWQGCE 58 M RIL DL +E I++LD RA L+REAV +L+ S G+W + Sbjct: 1 MTRILADLPDEDIEKLDARAAALGKSRAALVREAVKLFLVQGSSSNDWIDRFAGLWAERD 60 Query: 59 E--DGVEYQRKLREE 71 + D V YQR +RE+ Sbjct: 61 DIPDSVAYQRAIRED 75 >UniRef50_Q2NCL5 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NCL5_ERYLH Length = 71 Score = 51.6 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQ-SQTARTSVPGIWQGCEE 59 M RIL+DL ++ I+ LD + RA +REAV YL Q G W + Sbjct: 1 MSRILIDLPDDDIRSLDAMARANGRSRAAEMREAVALYLRRQADGNWIAQGSGYWADKDA 60 >UniRef50_D2RG21 Putative transcriptional regulator, CopG family n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RG21_ARCPR Length = 126 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 25/44 (56%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQ 44 M R + + ++ K LDDL + + R++++REA+ YL + Sbjct: 1 MRRFGVSIPEDLAKALDDLAEKLGVSRSEVVREALRTYLAEHTH 44 >UniRef50_A6DUJ7 Transcriptional regulator, CopG family protein n=2 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUJ7_9BACT Length = 74 Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTART----SVPGIWQG 56 M R + ++ E + L+ L +++L+R A+D ++ N + + + G+W+ Sbjct: 1 MIRTQVYITKEEKESLESLAQSTGKSQSELIRNAIDTFIENNNTKNKKASLLNAFGMWKT 60 Query: 57 CEED 60 + D Sbjct: 61 NDHD 64 >UniRef50_D2ML47 Putative uncharacterized protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML47_9BACT Length = 81 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQ-------TARTSVPGI 53 M R ++ L +E L + +P ++L+R AV +Y S G Sbjct: 1 MSRTIVSLPDEDKTWLARQASAQRVPMSELVRRAVREYRERHGNGKSERLSELLDSTRGS 60 Query: 54 WQGCEEDGVEYQRKLREEW 72 W+ DG+ YQ R+EW Sbjct: 61 WKH--GDGLRYQSNTRKEW 77 >UniRef50_A8ZVF9 CopG domain protein DNA-binding domain protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZVF9_DESOH Length = 77 Score = 45.0 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLIN----QSQTARTSVPGIWQG 56 M R + L+ + QL+ + +++L+REA+D + + GIW+ Sbjct: 1 MIRTQIYLTEKQRNQLNAIAKVAGKNQSELIREAIDNLIGKTGGGHRASVLRQAAGIWKD 60 Query: 57 CEEDGVEYQRKLREEW 72 + + LREEW Sbjct: 61 RTD--LPDFDALREEW 74 >UniRef50_A8GXR1 Ubiquinone/menaquinone biosynthesis methyltransferase n=2 Tax=Rickettsia RepID=A8GXR1_RICB8 Length = 55 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 48 TSVPGIWQGCEEDGVEYQRKLREEW 72 S GIW+ + D +EYQ KLR+EW Sbjct: 17 ESAFGIWKDMKLDSLEYQAKLRDEW 41 >UniRef50_Q1NPS1 Helix-turn-helix protein, CopG n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPS1_9DELT Length = 103 Score = 42.0 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLI----NQSQTARTSVPGIWQG 56 M R + L+ + + L +A+L+REAVD ++ G+W+ Sbjct: 27 MIRTQVYLTEKERLAISSLAEATGKKQAELIREAVDIFIELRSGRHRDEILDQAAGMWRD 86 Query: 57 CEEDGVEYQRKLREEW 72 + + R+ W Sbjct: 87 RND--LPDFTASRQSW 100 >UniRef50_A5G6A8 CopG domain protein DNA-binding domain protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G6A8_GEOUR Length = 82 Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 21/48 (43%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTART 48 M R + LS + L + ++ A ++R+AVD + ++ Sbjct: 1 MVRTQIQLSENQVAMLKRIAASQHKSMAAVIRQAVDFFARSKDVADPK 48 >UniRef50_C6DME9 Antitoxin n=12 Tax=Mycobacterium tuberculosis complex RepID=C6DME9_MYCTK Length = 85 Score = 39.3 bits (90), Expect = 0.035, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVP----GIWQGCE 58 R + L E ++ LD R++L+R A+ + S+ R + G W+G + Sbjct: 2 RTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRD 61 Query: 59 EDGVEYQRKLREE 71 G EY +R + Sbjct: 62 FTGTEYVDAIRGD 74 >UniRef50_A9KFT6 Transcriptional regulator, CopG family n=6 Tax=Coxiella burnetii RepID=A9KFT6_COXBN Length = 84 Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQ------SQTARTSVPGIW 54 M R + L+ + K L+ L + ++ L+REA+DQ++ Q A + G+W Sbjct: 1 MIRTQIYLTKQERKYLNLLSQKIGKSQSALIREAIDQFIKAHLKARDDHQAAMEAAKGLW 60 Query: 55 QGCEE 59 ++ Sbjct: 61 ADRKD 65 >UniRef50_Q4UL23 Probable antitoxin of toxin-antitoxin system n=3 Tax=spotted fever group RepID=Q4UL23_RICFE Length = 91 Score = 39.3 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEED 60 M R+ L + +E+ L + + + R+A++ YL + + + + + D Sbjct: 14 MARLNLTIPDELNDSLTCSAKSLDRSKGYIARKAIEYYLKEIQEDSEDAKIALQRINAPD 73 Query: 61 GVEYQRKLREEW 72 Y EW Sbjct: 74 FKTYTTDEVREW 85 >UniRef50_Q7NGD3 Gsr3238 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NGD3_GLOVI Length = 78 Score = 38.9 bits (89), Expect = 0.050, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 3 RILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQ----TARTSVPGIWQGCE 58 + ++ +S+ V ++ + L + + R++L A+ ++ A +V G G Sbjct: 2 KAVVSISSPVFREAELLAKRLGISRSELYSRAIKAFVEVHKHQGITEALDAVFGEQPGAL 61 Query: 59 EDGVEYQRKL---REEW 72 E G+ Y + RE+W Sbjct: 62 EPGLAYLQFASLKREDW 78 >UniRef50_Q1H065 Transcriptional regulator, CopG family n=4 Tax=Proteobacteria RepID=Q1H065_METFK Length = 156 Score = 38.1 bits (87), Expect = 0.091, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 1 MGRILLDLSNEVIKQLDDLEVQRN-LPRADLLREAVDQYLINQSQTARTSV 50 + RI + L +E+ +LD + +R R+ + + + QYL + V Sbjct: 11 VNRISISLPDELHAELDIMVAERGFESRSQAINDMLRQYLAEHQREKGNEV 61 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.136 0.381 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 363,411,892 Number of Sequences: 3077464 Number of extensions: 9631764 Number of successful extensions: 39202 Number of sequences better than 1.0e-01: 48 Number of HSP's better than 0.1 without gapping: 66 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 39112 Number of HSP's gapped (non-prelim): 84 length of query: 72 length of database: 1,040,396,356 effective HSP length: 43 effective length of query: 29 effective length of database: 908,065,404 effective search space: 26333896716 effective search space used: 26333896716 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.1 bits)