BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (72 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta... 149 2e-35 UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte... 101 6e-21 UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q... 95 6e-19 UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX 81 1e-14 UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax... 74 2e-12 UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac... 67 2e-10 UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax... 60 2e-08 UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae ... 60 2e-08 UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T... 54 2e-06 UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 40 0.020 >UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Tax=Enterobacteriaceae RepID=HHA_ECO57 Length = 72 Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY 60 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY Sbjct: 1 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY 60 Query: 61 DKIPSSVWKFIR 72 DKIPSSVWKFIR Sbjct: 61 DKIPSSVWKFIR 72 >UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae RepID=A7FCE9_YERP3 Length = 68 Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 46/67 (68%), Positives = 58/67 (86%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPS 65 + KT++LMRLRRC T++TLE++IE+ KY LS +EL F SAADHRLAELTMNKLYDKIP+ Sbjct: 2 MNKTEWLMRLRRCTTMETLEQIIERKKYTLSADELETFNSAADHRLAELTMNKLYDKIPA 61 Query: 66 SVWKFIR 72 SVW+ I+ Sbjct: 62 SVWQHIK 68 >UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX Length = 75 Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 43/65 (66%), Positives = 54/65 (83%) Query: 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66 TK D+L +LRRC T+DTLE++IEKN+ L +EL F +AADHRLAELTMNKLYDK+P S Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEKNQNCLPPSELESFNAAADHRLAELTMNKLYDKVPPS 69 Query: 67 VWKFI 71 VWK++ Sbjct: 70 VWKYV 74 >UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX Length = 69 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/66 (53%), Positives = 50/66 (75%) Query: 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66 TK ++L +LRRC +++TLE++I KN+ L ++E F SAADHRLAEL KLYD+IP Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLLNSERESFNSAADHRLAELITGKLYDRIPKE 63 Query: 67 VWKFIR 72 +WK++R Sbjct: 64 IWKYVR 69 >UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax=Enterobacteriaceae RepID=B0EYN1_ECOLX Length = 71 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/49 (67%), Positives = 40/49 (81%) Query: 24 LERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR 72 LE+VIE N+Y+L +E FYSAADHR AEL MNKLYDK+PS VWK++R Sbjct: 23 LEKVIEINRYKLPLSESEAFYSAADHRRAELVMNKLYDKVPSGVWKYVR 71 >UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae RepID=B5EWE3_SALA4 Length = 67 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 46/67 (68%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPS 65 + K +YL++ RR +TLE+V+E + ++S + F +AADHR AEL +K++DK+P Sbjct: 1 MDKLEYLLKFRRSNNDETLEKVVEHMEPKISKEDYNAFQAAADHRRAELACHKIFDKVPK 60 Query: 66 SVWKFIR 72 S WKF++ Sbjct: 61 SAWKFVK 67 >UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella pneumoniae RepID=B5RJT3_KLEP3 Length = 84 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 5/66 (7%) Query: 11 YLMRLRRCQTIDTLERVIEKNKYELSD-----NELAVFYSAADHRLAELTMNKLYDKIPS 65 YL++ R+C T +TL++V E+ +L+D N++ A DHR AE+ M K+YDKIP+ Sbjct: 15 YLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIYMKKIYDKIPA 74 Query: 66 SVWKFI 71 SVW I Sbjct: 75 SVWHLI 80 >UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae Sd197 RepID=Q326W4_SHIDS Length = 62 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/47 (55%), Positives = 35/47 (74%) Query: 26 RVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR 72 ++I KN+ LS++E F SAADHRLAEL KLYD+IP +WK++R Sbjct: 16 KIIHKNRDSLSNSERESFNSAADHRLAELITGKLYDRIPKEIWKYVR 62 >UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 Tax=Enterobacteriaceae RepID=CNU_ECOL5 Length = 71 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDN-ELAVFYSAADHRLAEL-TMNKLYD-- 61 +T DYL++ R+ ++++LE++ + Y L+D+ EL Y AADHR AEL + +L+D Sbjct: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 Query: 62 KIPSSVWKFIR 72 ++P SVW +++ Sbjct: 61 QVPKSVWHYVQ 71 >UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47498_ECOLX Length = 70 Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 1 MSEKPL-TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKL 59 MS K + + D+L +RR D+L+ ++ + L E +AA+HR E+ KL Sbjct: 1 MSSKNMKSAEDWLHTVRRFMNEDSLDTYVDSKRDVLPATEFMRLLTAAEHRRVEIRTGKL 60 Query: 60 YDKIPSSVWK 69 +DKIP +++ Sbjct: 61 FDKIPKGLFR 70 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta... 111 8e-24 UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q... 109 3e-23 UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte... 100 2e-20 UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX 99 4e-20 UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac... 94 1e-18 UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T... 87 1e-16 UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax... 87 1e-16 UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax... 84 1e-15 UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae ... 78 1e-13 Sequences not found previously or not previously below threshold: UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 55 5e-07 UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia col... 46 3e-04 UniRef50_C1HMB1 Hemolysin expression modulating protein n=3 Tax=... 41 0.014 >UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Tax=Enterobacteriaceae RepID=HHA_ECO57 Length = 72 Score = 111 bits (277), Expect = 8e-24, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY 60 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY Sbjct: 1 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY 60 Query: 61 DKIPSSVWKFIR 72 DKIPSSVWKFIR Sbjct: 61 DKIPSSVWKFIR 72 >UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX Length = 75 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 43/65 (66%), Positives = 54/65 (83%) Query: 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66 TK D+L +LRRC T+DTLE++IEKN+ L +EL F +AADHRLAELTMNKLYDK+P S Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEKNQNCLPPSELESFNAAADHRLAELTMNKLYDKVPPS 69 Query: 67 VWKFI 71 VWK++ Sbjct: 70 VWKYV 74 >UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae RepID=A7FCE9_YERP3 Length = 68 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 46/67 (68%), Positives = 58/67 (86%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPS 65 + KT++LMRLRRC T++TLE++IE+ KY LS +EL F SAADHRLAELTMNKLYDKIP+ Sbjct: 2 MNKTEWLMRLRRCTTMETLEQIIERKKYTLSADELETFNSAADHRLAELTMNKLYDKIPA 61 Query: 66 SVWKFIR 72 SVW+ I+ Sbjct: 62 SVWQHIK 68 >UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX Length = 69 Score = 99.3 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 35/66 (53%), Positives = 50/66 (75%) Query: 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66 TK ++L +LRRC +++TLE++I KN+ L ++E F SAADHRLAEL KLYD+IP Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLLNSERESFNSAADHRLAELITGKLYDRIPKE 63 Query: 67 VWKFIR 72 +WK++R Sbjct: 64 IWKYVR 69 >UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae RepID=B5EWE3_SALA4 Length = 67 Score = 94.3 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 46/67 (68%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPS 65 + K +YL++ RR +TLE+V+E + ++S + F +AADHR AEL +K++DK+P Sbjct: 1 MDKLEYLLKFRRSNNDETLEKVVEHMEPKISKEDYNAFQAAADHRRAELACHKIFDKVPK 60 Query: 66 SVWKFIR 72 S WKF++ Sbjct: 61 SAWKFVK 67 >UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 Tax=Enterobacteriaceae RepID=CNU_ECOL5 Length = 71 Score = 87.4 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDN-ELAVFYSAADHRLAEL-TMNKLYD-- 61 +T DYL++ R+ ++++LE++ + Y L+D+ EL Y AADHR AEL + +L+D Sbjct: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 Query: 62 KIPSSVWKFIR 72 ++P SVW +++ Sbjct: 61 QVPKSVWHYVQ 71 >UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella pneumoniae RepID=B5RJT3_KLEP3 Length = 84 Score = 87.4 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 8 KTDYLMRLRRCQTIDTLERVIEKNKYELSD-----NELAVFYSAADHRLAELTMNKLYDK 62 + YL++ R+C T +TL++V E+ +L+D N++ A DHR AE+ M K+YDK Sbjct: 12 RETYLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIYMKKIYDK 71 Query: 63 IPSSVWKFI 71 IP+SVW I Sbjct: 72 IPASVWHLI 80 >UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax=Enterobacteriaceae RepID=B0EYN1_ECOLX Length = 71 Score = 84.3 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 33/49 (67%), Positives = 40/49 (81%) Query: 24 LERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR 72 LE+VIE N+Y+L +E FYSAADHR AEL MNKLYDK+PS VWK++R Sbjct: 23 LEKVIEINRYKLPLSESEAFYSAADHRRAELVMNKLYDKVPSGVWKYVR 71 >UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae Sd197 RepID=Q326W4_SHIDS Length = 62 Score = 77.8 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 26/47 (55%), Positives = 35/47 (74%) Query: 26 RVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR 72 ++I KN+ LS++E F SAADHRLAEL KLYD+IP +WK++R Sbjct: 16 KIIHKNRDSLSNSERESFNSAADHRLAELITGKLYDRIPKEIWKYVR 62 >UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47498_ECOLX Length = 70 Score = 55.4 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 1 MSEKPL-TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKL 59 MS K + + D+L +RR D+L+ ++ + L E +AA+HR E+ KL Sbjct: 1 MSSKNMKSAEDWLHTVRRFMNEDSLDTYVDSKRDVLPATEFMRLLTAAEHRRVEIRTGKL 60 Query: 60 YDKIPSSVWK 69 +DKIP +++ Sbjct: 61 FDKIPKGLFR 70 >UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia coli 53638 RepID=B2U682_ECOLX Length = 39 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 24/30 (80%) Query: 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELS 36 TK ++L +LRRC +++TLE++I KN+ LS Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLS 33 >UniRef50_C1HMB1 Hemolysin expression modulating protein n=3 Tax=Escherichia RepID=C1HMB1_9ESCH Length = 58 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 16/32 (50%), Positives = 21/32 (65%) Query: 26 RVIEKNKYELSDNELAVFYSAADHRLAELTMN 57 +V +Y+L+ EL F SA D+RLAELT N Sbjct: 12 KVNSHTRYKLTLAELEAFNSAVDNRLAELTAN 43 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q... 109 3e-23 UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta... 107 1e-22 UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX 99 3e-20 UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte... 99 6e-20 UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac... 94 2e-18 UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T... 87 1e-16 UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax... 87 2e-16 UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 87 3e-16 UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax... 85 7e-16 UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae ... 78 1e-13 UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia col... 47 2e-04 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX Length = 75 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 43/65 (66%), Positives = 54/65 (83%) Query: 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66 TK D+L +LRRC T+DTLE++IEKN+ L +EL F +AADHRLAELTMNKLYDK+P S Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEKNQNCLPPSELESFNAAADHRLAELTMNKLYDKVPPS 69 Query: 67 VWKFI 71 VWK++ Sbjct: 70 VWKYV 74 >UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Tax=Enterobacteriaceae RepID=HHA_ECO57 Length = 72 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 1 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY 60 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY Sbjct: 1 MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY 60 Query: 61 DKIPSSVWKFIR 72 DKIPSSVWKFIR Sbjct: 61 DKIPSSVWKFIR 72 >UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX Length = 69 Score = 99.3 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 35/66 (53%), Positives = 50/66 (75%) Query: 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66 TK ++L +LRRC +++TLE++I KN+ L ++E F SAADHRLAEL KLYD+IP Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLLNSERESFNSAADHRLAELITGKLYDRIPKE 63 Query: 67 VWKFIR 72 +WK++R Sbjct: 64 IWKYVR 69 >UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae RepID=A7FCE9_YERP3 Length = 68 Score = 98.6 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 46/67 (68%), Positives = 58/67 (86%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPS 65 + KT++LMRLRRC T++TLE++IE+ KY LS +EL F SAADHRLAELTMNKLYDKIP+ Sbjct: 2 MNKTEWLMRLRRCTTMETLEQIIERKKYTLSADELETFNSAADHRLAELTMNKLYDKIPA 61 Query: 66 SVWKFIR 72 SVW+ I+ Sbjct: 62 SVWQHIK 68 >UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae RepID=B5EWE3_SALA4 Length = 67 Score = 93.6 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 46/67 (68%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPS 65 + K +YL++ RR +TLE+V+E + ++S + F +AADHR AEL +K++DK+P Sbjct: 1 MDKLEYLLKFRRSNNDETLEKVVEHMEPKISKEDYNAFQAAADHRRAELACHKIFDKVPK 60 Query: 66 SVWKFIR 72 S WKF++ Sbjct: 61 SAWKFVK 67 >UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 Tax=Enterobacteriaceae RepID=CNU_ECOL5 Length = 71 Score = 87.4 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDN-ELAVFYSAADHRLAEL-TMNKLYD-- 61 +T DYL++ R+ ++++LE++ + Y L+D+ EL Y AADHR AEL + +L+D Sbjct: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 Query: 62 KIPSSVWKFIR 72 ++P SVW +++ Sbjct: 61 QVPKSVWHYVQ 71 >UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella pneumoniae RepID=B5RJT3_KLEP3 Length = 84 Score = 87.0 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 5/69 (7%) Query: 8 KTDYLMRLRRCQTIDTLERVIEKNKYELSD-----NELAVFYSAADHRLAELTMNKLYDK 62 + YL++ R+C T +TL++V E+ +L+D N++ A DHR AE+ M K+YDK Sbjct: 12 RETYLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIYMKKIYDK 71 Query: 63 IPSSVWKFI 71 IP+SVW I Sbjct: 72 IPASVWHLI 80 >UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47498_ECOLX Length = 70 Score = 86.6 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 1 MSEKPL-TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKL 59 MS K + + D+L +RR D+L+ ++ + L E +AA+HR E+ KL Sbjct: 1 MSSKNMKSAEDWLHTVRRFMNEDSLDTYVDSKRDVLPATEFMRLLTAAEHRRVEIRTGKL 60 Query: 60 YDKIPSSVWK 69 +DKIP +++ Sbjct: 61 FDKIPKGLFR 70 >UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax=Enterobacteriaceae RepID=B0EYN1_ECOLX Length = 71 Score = 85.1 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 33/49 (67%), Positives = 40/49 (81%) Query: 24 LERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR 72 LE+VIE N+Y+L +E FYSAADHR AEL MNKLYDK+PS VWK++R Sbjct: 23 LEKVIEINRYKLPLSESEAFYSAADHRRAELVMNKLYDKVPSGVWKYVR 71 >UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae Sd197 RepID=Q326W4_SHIDS Length = 62 Score = 77.8 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 26/47 (55%), Positives = 35/47 (74%) Query: 26 RVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR 72 ++I KN+ LS++E F SAADHRLAEL KLYD+IP +WK++R Sbjct: 16 KIIHKNRDSLSNSERESFNSAADHRLAELITGKLYDRIPKEIWKYVR 62 >UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia coli 53638 RepID=B2U682_ECOLX Length = 39 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 15/30 (50%), Positives = 24/30 (80%) Query: 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELS 36 TK ++L +LRRC +++TLE++I KN+ LS Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLS 33 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.305 0.138 0.369 Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 396,622,326 Number of Sequences: 3077464 Number of extensions: 10136972 Number of successful extensions: 34619 Number of sequences better than 1.0e-01: 12 Number of HSP's better than 0.1 without gapping: 33 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 34578 Number of HSP's gapped (non-prelim): 35 length of query: 72 length of database: 1,040,396,356 effective HSP length: 43 effective length of query: 29 effective length of database: 908,065,404 effective search space: 26333896716 effective search space used: 26333896716 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 87 (38.1 bits)