Phyre 2 alignment of P50465 with c1dgsB_

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Job Description | P50465
Confidence | 60.75% | Date | Thu Jan 5 12:04:46 GMT 2012
Rank | 63 | Aligned Residues | 23
% Identity | 35% | Template | c1dgsB_
PDB info | PDB header:ligase | Chain: B: PDB Molecule:dna ligase; | PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 236 | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 |  |  | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |
Query Sequence |  | E | P | C | E | R | C | G | S | I | I | E | K | T | T | L | S | S | R | P | F | Y | W | C | P | G | . | . | C | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  | . | . |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | A | C | P | E | C | G | H | R | L | V | K | E | . | . | . | . | G | K | V | H | R | C | P | N | P | L | C | P
Template Known Secondary structure |  | S | B |  | T | T | T |  |  | B |  |  |  |  | . | . | . | . | T | T |  |  |  |  |  |  | T | T |  | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2404 | . | . | . | . | . | 2410 | . | . | . | . | . | . |  |  |  |  | . | . | . | 2420 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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