Phyre 2 alignment of P50465 with c3na7A_

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Job Description | P50465
Confidence | 52.54% | Date | Thu Jan 5 12:04:46 GMT 2012
Rank | 74 | Aligned Residues | 29
% Identity | 24% | Template | c3na7A_
PDB info | PDB header:gene regulation, chaperone | Chain: A: PDB Molecule:hp0958; | PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 235 | . | . | . | . | 240 | . | . | . | . | . | . |  |  |  |  | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | E | P | C | E | R | C | G | S | I | I | E | . | . | . | . | K | T | T | L | S | S | R | P | F | Y | W | C | P | G | C | Q | H
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | Q | A | C | G | G | C | F | I | R | L | N | D | K | I | Y | T | E | V | L | T | S | G | D | M | I | T | C | P | Y | C | G | R
Template Known Secondary structure |  | T | T | B |  | T | T | T |  |  | B |  |  |  |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  | T | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 196 | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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