Phyre 2 alignment of P50465 with c3h0gI_

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Job Description | P50465
Confidence | 57.65% | Date | Thu Jan 5 12:04:46 GMT 2012
Rank | 69 | Aligned Residues | 32
% Identity | 28% | Template | c3h0gI_
PDB info | PDB header:transcription | Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; | PDBTitle: rna polymerase ii from schizosaccharomyces pombe
Resolution | 3.65 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 232 | . | . | . | . | . | . | . | 240 | . | . | . |  | . | . | . | . | . | . | 250 | . | . | . | . |  |  |  |  |  |  |  | . | . | . | . | . | 260 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | H | R | D | G | E | P | C | E | R | C | G | S | . | I | I | E | K | T | T | L | S | S | R | P | . | . | . | . | . | . | . | F | Y | W | C | P | G | C | Q | H
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | R | S | D | K | E | C | P | R | C | H | Q | H | E | A | V | F | Y | Q | T | H | S | R | R | G | D | T | M | M | T | L | I | Y | V | C | V | H | C | G | F
Template Known Secondary structure |  |  | B |  |  | S |  |  | S | S | S |  |  | S |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  | S | S | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 69 | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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