BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (93 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P32700 Uncharacterized protein yjcB n=86 Tax=Enterobact... 187 7e-47 UniRef50_C8QFY5 Putative inner membrane protein n=2 Tax=Enteroba... 91 9e-18 UniRef50_A8GEB6 Putative uncharacterized protein n=1 Tax=Serrati... 83 2e-15 >UniRef50_P32700 Uncharacterized protein yjcB n=86 Tax=Enterobacteriaceae RepID=YJCB_ECOLI Length = 93 Score = 187 bits (476), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 93/93 (100%), Positives = 93/93 (100%) Query: 1 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG 60 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG Sbjct: 1 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG 60 Query: 61 ITMADITAIWHNIESVMIEEMNQTPPQWPMILT 93 ITMADITAIWHNIESVMIEEMNQTPPQWPMILT Sbjct: 61 ITMADITAIWHNIESVMIEEMNQTPPQWPMILT 93 >UniRef50_C8QFY5 Putative inner membrane protein n=2 Tax=Enterobacteriaceae RepID=C8QFY5_9ENTR Length = 93 Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 44/92 (47%), Positives = 65/92 (70%), Gaps = 2/92 (2%) Query: 1 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG 60 MATLTT ++++RW+LLSAVMMF ASTL IRFR++ + +A++ G+G+ +CWF GL+G Sbjct: 1 MATLTTSLIVMRWELLSAVMMFFASTLKIRFRQNSHHVMALMCGGIGLGMSCWFVTGLMG 60 Query: 61 IT--MADITAIWHNIESVMIEEMNQTPPQWPM 90 IT M ++ ++ +E M+QTP WPM Sbjct: 61 ITLSMENLHNFMEISKNAFVEVMSQTPADWPM 92 >UniRef50_A8GEB6 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8GEB6_SERP5 Length = 93 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 61/92 (66%), Gaps = 2/92 (2%) Query: 1 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG 60 M+ + TG +++RW+LLSAVMMF++S LN+ R++ G+A + S LG+ + CWF MGL+G Sbjct: 1 MSAIATGFIMMRWELLSAVMMFMSSQLNVVCRKTSRNGMAFMFSSLGLFTTCWFVMGLMG 60 Query: 61 ITMAD--ITAIWHNIESVMIEEMNQTPPQWPM 90 I+ + T W + + +E ++ TP WP+ Sbjct: 61 ISFSQEGFTQFWSHAWDMYVEVVSNTPTDWPL 92 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P32700 Uncharacterized protein yjcB n=86 Tax=Enterobact... 117 8e-26 UniRef50_C8QFY5 Putative inner membrane protein n=2 Tax=Enteroba... 110 2e-23 UniRef50_A8GEB6 Putative uncharacterized protein n=1 Tax=Serrati... 110 2e-23 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P32700 Uncharacterized protein yjcB n=86 Tax=Enterobacteriaceae RepID=YJCB_ECOLI Length = 93 Score = 117 bits (294), Expect = 8e-26, Method: Composition-based stats. Identities = 93/93 (100%), Positives = 93/93 (100%) Query: 1 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG 60 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG Sbjct: 1 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG 60 Query: 61 ITMADITAIWHNIESVMIEEMNQTPPQWPMILT 93 ITMADITAIWHNIESVMIEEMNQTPPQWPMILT Sbjct: 61 ITMADITAIWHNIESVMIEEMNQTPPQWPMILT 93 >UniRef50_C8QFY5 Putative inner membrane protein n=2 Tax=Enterobacteriaceae RepID=C8QFY5_9ENTR Length = 93 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 44/92 (47%), Positives = 65/92 (70%), Gaps = 2/92 (2%) Query: 1 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG 60 MATLTT ++++RW+LLSAVMMF ASTL IRFR++ + +A++ G+G+ +CWF GL+G Sbjct: 1 MATLTTSLIVMRWELLSAVMMFFASTLKIRFRQNSHHVMALMCGGIGLGMSCWFVTGLMG 60 Query: 61 IT--MADITAIWHNIESVMIEEMNQTPPQWPM 90 IT M ++ ++ +E M+QTP WPM Sbjct: 61 ITLSMENLHNFMEISKNAFVEVMSQTPADWPM 92 >UniRef50_A8GEB6 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans 568 RepID=A8GEB6_SERP5 Length = 93 Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 61/92 (66%), Gaps = 2/92 (2%) Query: 1 MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISSGLGVVSACWFAMGLLG 60 M+ + TG +++RW+LLSAVMMF++S LN+ R++ G+A + S LG+ + CWF MGL+G Sbjct: 1 MSAIATGFIMMRWELLSAVMMFMSSQLNVVCRKTSRNGMAFMFSSLGLFTTCWFVMGLMG 60 Query: 61 ITMAD--ITAIWHNIESVMIEEMNQTPPQWPM 90 I+ + T W + + +E ++ TP WP+ Sbjct: 61 ISFSQEGFTQFWSHAWDMYVEVVSNTPTDWPL 92 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.322 0.135 0.425 Lambda K H 0.267 0.0419 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 337,418,769 Number of Sequences: 3077464 Number of extensions: 10330739 Number of successful extensions: 40829 Number of sequences better than 1.0e-01: 3 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40819 Number of HSP's gapped (non-prelim): 6 length of query: 93 length of database: 1,040,396,356 effective HSP length: 63 effective length of query: 30 effective length of database: 846,516,124 effective search space: 25395483720 effective search space used: 25395483720 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.1 bits)