16/01/2012 14:51:08 : INFO  : Run start: Mon Jan 16 14:51:06 GMT 2012
16/01/2012 14:51:17 : INFO  : Initialised job
16/01/2012 14:51:20 : INFO  : Renaming log file 'phyre2_20120116_145105.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/e53bd89305e17d96/phyre_20120116_145105.log'
16/01/2012 14:51:22 : INFO  : Initialised job:
Sequence
>batch____
MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISIPSDGKKGDKIWQSSEY
FMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSYTFGVTYNGVDYDSTSPLP
IAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVRVQLYIKLAKNANKVNKKLVL
PDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLDCFVNVDLEPADGVVDFGKINSR
TIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTTDILSDYSHLDIGNGLLLKIFHNDG
TATEFNRFSQFASFSSSSAPSVTAPFRAELSANPAETVVEGPFSKDVILKITYN

16/01/2012 14:51:24 : INFO  : Checked sequence
16/01/2012 14:51:30 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 14:51:32 : INFO  : PSI-BLAST 3 iterations
16/01/2012 14:53:02 : INFO  : PSI-BLAST 5 iterations
16/01/2012 14:54:46 : INFO  : Finished PSI-BLAST
16/01/2012 14:54:50 : INFO  : Running Buildali to generate a3m file
16/01/2012 15:02:52 : INFO  : Converting to HMM
16/01/2012 15:02:56 : INFO  : Calibrating HMM
16/01/2012 15:03:17 : INFO  : Searching HMM database
16/01/2012 15:10:27 : INFO  : Finished buildali
16/01/2012 15:10:30 : INFO  : Predicting secondary structure
16/01/2012 15:10:43 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 15:10:46 : INFO  : Predicting Disordered regions
16/01/2012 15:10:53 : INFO  : Predicted Disorder (Disopred)
16/01/2012 15:10:57 : INFO  : Running memsat_svm check
16/01/2012 15:15:43 : INFO  : Running memsat_svm full
16/01/2012 15:22:58 : INFO  : Predicted Transmembrane (memsat_svm) ID 'e53bd89305e17d96'
16/01/2012 15:23:01 : INFO  : Initialising fold library search
16/01/2012 15:23:09 : INFO  : Initialised search input
16/01/2012 15:23:14 : INFO  : Building Ensemble models
16/01/2012 15:23:20 : INFO  : Building hh.c1klfP_.model.1.pdb
16/01/2012 15:23:51 : INFO  : Building c1klfP_.1.pdb
16/01/2012 15:24:19 : INFO  : Building c3bfwA_.2.pdb
16/01/2012 15:24:49 : INFO  : Building c3jwnK_.3.pdb
16/01/2012 15:25:19 : INFO  : Building c3jwnL_.4.pdb
16/01/2012 15:25:48 : INFO  : Building c3jwnE_.5.pdb
16/01/2012 15:26:19 : INFO  : Building c3jwnF_.6.pdb
16/01/2012 15:26:49 : INFO  : Building d1ze3h1.7.pdb
16/01/2012 15:27:20 : INFO  : Building c2w07B_.8.pdb
16/01/2012 15:27:49 : INFO  : Building c2jtyA_.9.pdb
16/01/2012 15:28:19 : INFO  : Building c2jmrA_.10.pdb
16/01/2012 15:28:51 : INFO  : Building d2j2zb1.11.pdb
16/01/2012 15:29:21 : INFO  : Building d1pdkb_.12.pdb
16/01/2012 15:29:53 : INFO  : Building d2uy6b1.13.pdb
16/01/2012 15:30:23 : INFO  : Building c3bwuF_.14.pdb
16/01/2012 15:30:53 : INFO  : Building d1n12a_.15.pdb
16/01/2012 15:31:26 : INFO  : Building c1w3gA_.16.pdb
16/01/2012 15:31:57 : INFO  : Building c2wmpB_.17.pdb
16/01/2012 15:32:29 : INFO  : Building d1uwfa1.18.pdb
16/01/2012 15:33:01 : INFO  : Building d2jnaa1.19.pdb
16/01/2012 15:33:32 : INFO  : Building d1p4ua_.20.pdb
16/01/2012 15:34:39 : INFO  : Finished HH model building
16/01/2012 15:34:42 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 15:36:00 : INFO  : html domain output complete ID 'e53bd89305e17d96'
16/01/2012 16:14:56 : INFO  : Run end  : Mon Jan 16 16:14:54 GMT 2012
