Phyre 2 Results for P76656

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Email | l.a.kelley@imperial.ac.uk
Description | P76656
Date | Thu Jan 5 12:25:15 GMT 2012
Unique Job ID | e53bd89305e17d96

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1klfP_
Top template information
PDB header:chaperone/adhesin complex Chain: P: PDB Molecule:fimh protein; PDBTitle: fimh adhesin-fimc chaperone complex with d-mannose
Confidence and coverage
Confidence: | 100.0% | Coverage: | 78%
277 residues ( 78% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | Y | L | L | I | V | I | T | F | F | M | G | F | S | S | L | P | A | W | A | M | D | C | Y | A | E | H | E | G | G | N | T | V | V | I | G | Y | V | P | R | I | S | I | P | S | D | G | K | K | G | D | K | I | W | Q | S | S | E | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? |  |  |  | ? |  |  |  |  |  |  |  |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | F | M | N | V | F | C | N | N | A | L | P | G | P | S | P | G | E | E | Y | P | S | A | W | A | N | I | M | M | L | L | A | S | G | Q | D | F | Y | N | Q | N | S | Y | T | F | G | V | T | Y | N | G | V | D | Y | D | S | T | S | P | L | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | I | A | A | P | V | C | I | D | I | K | G | A | G | T | F | G | N | G | Y | K | K | P | A | V | C | S | G | G | P | E | P | Q | L | S | V | T | F | P | V | R | V | Q | L | Y | I | K | L | A | K | N | A | N | K | V | N | K | K | L | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  | ? |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | P | D | E | Y | I | A | L | E | F | K | G | M | S | G | A | G | A | I | E | V | D | K | N | L | T | F | R | I | R | G | L | N | N | I | H | V | L | D | C | F | V | N | V | D | L | E | P | A | D | G | V | V | D | F | G | K | I | N | S | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  | ? | ? | ? |  | ? | ? |  | ? |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | T | I | K | N | T | S | V | S | E | T | F | S | V | V | M | T | K | D | P | G | A | A | C | T | E | Q | F | N | I | L | G | S | F | F | T | T | D | I | L | S | D | Y | S | H | L | D | I | G | N | G | L | L | L | K | I | F | H | N | D | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  | ? | ? | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | .
Sequence |  | T | A | T | E | F | N | R | F | S | Q | F | A | S | F | S | S | S | S | A | P | S | V | T | A | P | F | R | A | E | L | S | A | N | P | A | E | T | V | V | E | G | P | F | S | K | D | V | I | L | K | I | T | Y | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1klfP_ |

### PDB 1klf chain P

Region: 22 - 353
Aligned: 277
Modelled: 289
Confidence: 100.0%
Identity: 13%
PDB header:chaperone/adhesin complex
Chain: P: PDB Molecule:fimh protein;
PDBTitle: fimh adhesin-fimc chaperone complex with d-mannose

Phyre2
2 |
| c3bfwA_ |

### PDB 3bfw chain A

Region: 222 - 354
Aligned: 127
Modelled: 133
Confidence: 99.9%
Identity: 14%
PDB header:structural protein/structural protein
Chain: A: PDB Molecule:protein fimg;
PDBTitle: crystal structure of truncated fimg (fimgt) in complex with the donor2 strand peptide of fimf (dsf)

Phyre2
3 |
| c3jwnK_ |

### PDB 3jwn chain K

Region: 215 - 353
Aligned: 138
Modelled: 139
Confidence: 99.8%
Identity: 18%
PDB header:protein binding/cell adhesion
Chain: K: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
4 |
| c3jwnL_ |

### PDB 3jwn chain L

Region: 215 - 353
Aligned: 138
Modelled: 139
Confidence: 99.8%
Identity: 18%
PDB header:protein binding/cell adhesion
Chain: L: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
5 |
| c3jwnE_ |

### PDB 3jwn chain E

Region: 215 - 353
Aligned: 138
Modelled: 139
Confidence: 99.8%
Identity: 18%
PDB header:protein binding/cell adhesion
Chain: E: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
6 |
| c3jwnF_ |

### PDB 3jwn chain F

Region: 215 - 353
Aligned: 138
Modelled: 139
Confidence: 99.8%
Identity: 18%
PDB header:protein binding/cell adhesion
Chain: F: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
7 |
| d1ze3h1 |

### PDB 1ze3 chain H domain 1

Region: 222 - 353
Aligned: 119
Modelled: 129
Confidence: 99.8%
Identity: 12%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
8 |
| c2w07B_ |

### PDB 2w07 chain B

Region: 215 - 354
Aligned: 121
Modelled: 140
Confidence: 99.8%
Identity: 18%
PDB header:cell adhesion
Chain: B: PDB Molecule:minor pilin subunit papf;
PDBTitle: structural determinants of polymerization reactivity of the2 p pilus adaptor subunit papf

Phyre2
9 |
| c2jtyA_ |

### PDB 2jty chain A

Region: 215 - 353
Aligned: 136
Modelled: 139
Confidence: 99.8%
Identity: 18%
PDB header:structural protein
Chain: A: PDB Molecule:type-1 fimbrial protein, a chain;
PDBTitle: self-complemented variant of fima, the main subunit of type 1 pilus

Phyre2
10 |
| c2jmrA_ |

### PDB 2jmr chain A

Region: 215 - 353
Aligned: 138
Modelled: 139
Confidence: 99.8%
Identity: 18%
PDB header:cell adhesion
Chain: A: PDB Molecule:fimf;
PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf

Phyre2
11 |
| d2j2zb1 |

### PDB 2j2z chain B domain 1

Region: 215 - 353
Aligned: 135
Modelled: 136
Confidence: 99.8%
Identity: 11%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
12 |
| d1pdkb_ |

### PDB 1pdk chain B

Region: 216 - 353
Aligned: 138
Modelled: 138
Confidence: 99.8%
Identity: 19%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
13 |
| d2uy6b1 |

### PDB 2uy6 chain B domain 1

Region: 215 - 353
Aligned: 136
Modelled: 139
Confidence: 99.8%
Identity: 16%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
14 |
| c3bwuF_ |

### PDB 3bwu chain F

Region: 222 - 353
Aligned: 122
Modelled: 132
Confidence: 99.8%
Identity: 16%
PDB header:chaperone, structural, membrane protein
Chain: F: PDB Molecule:protein fimf;
PDBTitle: crystal structure of the ternary complex of fimd (n-terminal domain,2 fimdn) with fimc and the n-terminally truncated pilus subunit fimf3 (fimft)

Phyre2
15 |
| d1n12a_ |

### PDB 1n12 chain A

Region: 219 - 354
Aligned: 132
Modelled: 136
Confidence: 99.6%
Identity: 17%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
16 |
| c1w3gA_ |

### PDB 1w3g chain A

Region: 302 - 354
Aligned: 51
Modelled: 53
Confidence: 32.0%
Identity: 18%
PDB header:toxin/lectin
Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus;
PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules.

Phyre2
17 |
| c2wmpB_ |

### PDB 2wmp chain B

Region: 223 - 353
Aligned: 118
Modelled: 131
Confidence: 26.1%
Identity: 12%
PDB header:chaperone
Chain: B: PDB Molecule:papg protein;
PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin

Phyre2
18 |
| d1uwfa1 |

### PDB 1uwf chain A domain 1

Region: 22 - 216
Aligned: 156
Modelled: 170
Confidence: 22.1%
Identity: 15%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
19 |
| d2jnaa1 |

### PDB 2jna chain A domain 1

Region: 1 - 22
Aligned: 22
Modelled: 22
Confidence: 11.8%
Identity: 18%
Fold: Dodecin subunit-like
Superfamily: YdgH-like
Family: YdgH-like

Phyre2
20 |
| d1p4ua_ |

### PDB 1p4u chain A

Region: 225 - 344
Aligned: 120
Modelled: 120
Confidence: 11.0%
Identity: 11%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Clathrin adaptor appendage domain
Family: gamma-adaptin C-terminal appendage domain-like

Phyre2
21 |
22 |
23 |
24 |
25 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1klfP_ |
|  | 100.0 | 13 | PDB header:chaperone/adhesin complex Chain: P: PDB Molecule:fimh protein; PDBTitle: fimh adhesin-fimc chaperone complex with d-mannose
2 | c3bfwA_ |
|  | 99.9 | 14 | PDB header:structural protein/structural protein Chain: A: PDB Molecule:protein fimg; PDBTitle: crystal structure of truncated fimg (fimgt) in complex with the donor2 strand peptide of fimf (dsf)
3 | c3jwnK_ |
|  | 99.8 | 18 | PDB header:protein binding/cell adhesion Chain: K: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
4 | c3jwnL_ |
|  | 99.8 | 18 | PDB header:protein binding/cell adhesion Chain: L: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
5 | c3jwnE_ |
|  | 99.8 | 18 | PDB header:protein binding/cell adhesion Chain: E: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
6 | c3jwnF_ |
|  | 99.8 | 18 | PDB header:protein binding/cell adhesion Chain: F: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
7 | d1ze3h1 |
|  | 99.8 | 12 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
8 | c2w07B_ |
|  | 99.8 | 18 | PDB header:cell adhesion Chain: B: PDB Molecule:minor pilin subunit papf; PDBTitle: structural determinants of polymerization reactivity of the2 p pilus adaptor subunit papf
9 | c2jtyA_ |
|  | 99.8 | 18 | PDB header:structural protein Chain: A: PDB Molecule:type-1 fimbrial protein, a chain; PDBTitle: self-complemented variant of fima, the main subunit of type 1 pilus
10 | c2jmrA_ |
|  | 99.8 | 18 | PDB header:cell adhesion Chain: A: PDB Molecule:fimf; PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf
11 | d2j2zb1 |
|  | 99.8 | 11 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
12 | d1pdkb_ |
|  | 99.8 | 19 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
13 | d2uy6b1 |
|  | 99.8 | 16 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
14 | c3bwuF_ |
|  | 99.8 | 16 | PDB header:chaperone, structural, membrane protein Chain: F: PDB Molecule:protein fimf; PDBTitle: crystal structure of the ternary complex of fimd (n-terminal domain,2 fimdn) with fimc and the n-terminally truncated pilus subunit fimf3 (fimft)
15 | d1n12a_ |
|  | 99.6 | 17 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
16 | c1w3gA_ |
|  | 32.0 | 18 | PDB header:toxin/lectin Chain: A: PDB Molecule:hemolytic lectin from laetiporus sulphureus; PDBTitle: hemolytic lectin from the mushroom laetiporus sulphureus2 complexed with two n-acetyllactosamine molecules.
17 | c2wmpB_ |
|  | 26.1 | 12 | PDB header:chaperone Chain: B: PDB Molecule:papg protein; PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin
18 | d1uwfa1 |
|  | 22.1 | 15 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
19 | d2jnaa1 |
|  | 11.8 | 18 | Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like
20 | d1p4ua_ |
|  | 11.0 | 11 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:gamma-adaptin C-terminal appendage domain-like
21 | d1na8a_ |
| not modelled | 9.6 | 10 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:gamma-adaptin C-terminal appendage domain-like
22 | d1gywb_ |
| not modelled | 6.5 | 7 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:gamma-adaptin C-terminal appendage domain-like
23 | c3l48B_ |
| not modelled | 6.2 | 18 | PDB header:transport protein Chain: B: PDB Molecule:outer membrane usher protein papc; PDBTitle: crystal structure of the c-terminal domain of the papc usher
24 | d1gyva_ |
| not modelled | 6.1 | 5 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:gamma-adaptin C-terminal appendage domain-like
25 | c3ff7B_ |
| not modelled | 6.0 | 33 | PDB header:cell adhesion/immunue system Chain: B: PDB Molecule:epithelial cadherin; PDBTitle: structure of nk cell receptor klrg1 bound to e-cadherin

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0