Phyre 2 Results for P0AG16

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Email | l.a.kelley@imperial.ac.uk
Description | P0AG16
Date | Thu Jan 5 11:27:50 GMT 2012
Unique Job ID | e52469bda15927d9

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1ecjB_
Top template information
PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer
Confidence and coverage
Confidence: | 100.0% | Coverage: | 97%
492 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | C | G | I | V | G | I | A | G | V | M | P | V | N | Q | S | I | Y | D | A | L | T | V | L | Q | H | R | G | Q | D | A | A | G | I | I | T | I | D | A | N | N | C | F | R | L | R | K | A | N | G | L | V | S | D | V | F | E | A | R | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | M | Q | R | L | Q | G | N | M | G | I | G | H | V | R | Y | P | T | A | G | S | S | S | A | S | E | A | Q | P | F | Y | V | N | S | P | Y | G | I | T | L | A | H | N | G | N | L | T | N | A | H | E | L | R | K | K | L | F | E | E | K | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | R | H | I | N | T | T | S | D | S | E | I | L | L | N | I | F | A | S | E | L | D | N | F | R | H | Y | P | L | E | A | D | N | I | F | A | A | I | A | A | T | N | R | L | I | R | G | A | Y | A | C | V | A | M | I | I | G | H | G | M | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | A | F | R | D | P | N | G | I | R | P | L | V | L | G | K | R | D | I | D | E | N | R | T | E | Y | M | V | A | S | E | S | V | A | L | D | T | L | G | F | D | F | L | R | D | V | A | P | G | E | A | I | Y | I | T | E | E | G | Q | L | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | T | R | Q | C | A | D | N | P | V | S | N | P | C | L | F | E | Y | V | Y | F | A | R | P | D | S | F | I | D | K | I | S | V | Y | S | A | R | V | N | M | G | T | K | L | G | E | K | I | A | R | E | W | E | D | L | D | I | D | V | V | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | P | I | P | E | T | S | C | D | I | A | L | E | I | A | R | I | L | G | K | P | Y | R | Q | G | F | V | K | N | R | Y | V | G | R | T | F | I | M | P | G | Q | Q | L | R | R | K | S | V | R | R | K | L | N | A | N | R | A | E | F | R | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | K | N | V | L | L | V | D | D | S | I | V | R | G | T | T | S | E | Q | I | I | E | M | A | R | E | A | G | A | K | K | V | Y | L | A | S | A | A | P | E | I | R | F | P | N | V | Y | G | I | D | M | P | S | A | T | E | L | I | A | H | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | R | E | V | D | E | I | R | Q | I | I | G | A | D | G | L | I | F | Q | D | L | N | D | L | I | D | A | V | R | A | E | N | P | D | I | Q | Q | F | E | C | S | V | F | N | G | V | Y | V | T | K | D | V | D | Q | G | Y | L | D | F | L | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | .
Sequence |  | T | L | R | N | D | D | A | K | A | V | Q | R | Q | N | E | V | E | N | L | E | M | H | N | E | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1ecjB_ |

### PDB 1ecj chain B

Region: 2 - 493
Aligned: 492
Modelled: 492
Confidence: 100.0%
Identity: 100%
PDB header:transferase
Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate
PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer

Phyre2
2 |
| c1gph1_ |

### PDB 1gph chain 1

Region: 2 - 483
Aligned: 459
Modelled: 482
Confidence: 100.0%
Identity: 41%
PDB header:transferase(glutamine amidotransferase)
Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase;
PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis

Phyre2
3 |
| d1ecfa1 |

### PDB 1ecf chain A domain 1

Region: 251 - 493
Aligned: 243
Modelled: 243
Confidence: 100.0%
Identity: 100%
Fold: PRTase-like
Superfamily: PRTase-like
Family: Phosphoribosyltransferases (PRTases)

Phyre2
4 |
| d1gph11 |

### PDB 1gph chain 1 domain 1

Region: 252 - 483
Aligned: 227
Modelled: 232
Confidence: 100.0%
Identity: 45%
Fold: PRTase-like
Superfamily: PRTase-like
Family: Phosphoribosyltransferases (PRTases)

Phyre2
5 |
| d1ecfa2 |

### PDB 1ecf chain A domain 2

Region: 2 - 248
Aligned: 247
Modelled: 247
Confidence: 100.0%
Identity: 100%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
6 |
| d1gph12 |

### PDB 1gph chain 1 domain 2

Region: 2 - 251
Aligned: 232
Modelled: 250
Confidence: 100.0%
Identity: 38%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
7 |
| c1jxaA_ |

### PDB 1jxa chain A

Region: 2 - 253
Aligned: 231
Modelled: 242
Confidence: 100.0%
Identity: 28%
PDB header:transferase
Chain: A: PDB Molecule:glucosamine 6-phosphate synthase;
PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate

Phyre2
8 |
| d1xffa_ |

### PDB 1xff chain A

Region: 2 - 252
Aligned: 230
Modelled: 238
Confidence: 100.0%
Identity: 29%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
9 |
| d1ofda3 |

### PDB 1ofd chain A domain 3

Region: 2 - 240
Aligned: 226
Modelled: 232
Confidence: 100.0%
Identity: 27%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
10 |
| d1ea0a3 |

### PDB 1ea0 chain A domain 3

Region: 2 - 240
Aligned: 227
Modelled: 238
Confidence: 100.0%
Identity: 32%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
11 |
| c1ct9D_ |

### PDB 1ct9 chain D

Region: 2 - 322
Aligned: 244
Modelled: 263
Confidence: 100.0%
Identity: 25%
PDB header:ligase
Chain: D: PDB Molecule:asparagine synthetase b;
PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli

Phyre2
12 |
| d1ct9a2 |

### PDB 1ct9 chain A domain 2

Region: 2 - 243
Aligned: 186
Modelled: 197
Confidence: 100.0%
Identity: 28%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
13 |
| d1te5a_ |

### PDB 1te5 chain A

Region: 2 - 242
Aligned: 228
Modelled: 235
Confidence: 100.0%
Identity: 22%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
14 |
| c3mdnD_ |

### PDB 3mdn chain D

Region: 2 - 246
Aligned: 212
Modelled: 244
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: D: PDB Molecule:glutamine aminotransferase class-ii domain protein;
PDBTitle: structure of glutamine aminotransferase class-ii domain protein2 (spo2029) from silicibacter pomeroyi

Phyre2
15 |
| c1m1zB_ |

### PDB 1m1z chain B

Region: 24 - 322
Aligned: 227
Modelled: 263
Confidence: 99.9%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactam synthetase;
PDBTitle: beta-lactam synthetase apo enzyme

Phyre2
16 |
| c1q15A_ |

### PDB 1q15 chain A

Region: 23 - 312
Aligned: 212
Modelled: 233
Confidence: 99.9%
Identity: 15%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cara;
PDBTitle: carbapenam synthetase

Phyre2
17 |
| d1jgta2 |

### PDB 1jgt chain A domain 2

Region: 29 - 246
Aligned: 183
Modelled: 196
Confidence: 99.9%
Identity: 20%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
18 |
| d1q15a2 |

### PDB 1q15 chain A domain 2

Region: 22 - 238
Aligned: 155
Modelled: 168
Confidence: 99.9%
Identity: 16%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Class II glutamine amidotransferases

Phyre2
19 |
| c2vdcF_ |

### PDB 2vdc chain F

Region: 15 - 239
Aligned: 213
Modelled: 225
Confidence: 99.9%
Identity: 21%
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.

Phyre2
20 |
| c1lm1A_ |

### PDB 1lm1 chain A

Region: 15 - 234
Aligned: 206
Modelled: 219
Confidence: 99.9%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase;
PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1ecjB_ |
|  | 100.0 | 100 | PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer
2 | c1gph1_ |
|  | 100.0 | 41 | PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis
3 | d1ecfa1 |
|  | 100.0 | 100 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
4 | d1gph11 |
|  | 100.0 | 45 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
5 | d1ecfa2 |
|  | 100.0 | 100 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
6 | d1gph12 |
|  | 100.0 | 38 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
7 | c1jxaA_ |
|  | 100.0 | 28 | PDB header:transferase Chain: A: PDB Molecule:glucosamine 6-phosphate synthase; PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate
8 | d1xffa_ |
|  | 100.0 | 29 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
9 | d1ofda3 |
|  | 100.0 | 27 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
10 | d1ea0a3 |
|  | 100.0 | 32 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
11 | c1ct9D_ |
|  | 100.0 | 25 | PDB header:ligase Chain: D: PDB Molecule:asparagine synthetase b; PDBTitle: crystal structure of asparagine synthetase b from2 escherichia coli
12 | d1ct9a2 |
|  | 100.0 | 28 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
13 | d1te5a_ |
|  | 100.0 | 22 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
14 | c3mdnD_ |
|  | 100.0 | 20 | PDB header:transferase Chain: D: PDB Molecule:glutamine aminotransferase class-ii domain protein; PDBTitle: structure of glutamine aminotransferase class-ii domain protein2 (spo2029) from silicibacter pomeroyi
15 | c1m1zB_ |
|  | 99.9 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:beta-lactam synthetase; PDBTitle: beta-lactam synthetase apo enzyme
16 | c1q15A_ |
|  | 99.9 | 15 | PDB header:biosynthetic protein Chain: A: PDB Molecule:cara; PDBTitle: carbapenam synthetase
17 | d1jgta2 |
|  | 99.9 | 20 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
18 | d1q15a2 |
|  | 99.9 | 16 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Class II glutamine amidotransferases
19 | c2vdcF_ |
|  | 99.9 | 21 | PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
20 | c1lm1A_ |
|  | 99.9 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase; PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme
21 | c1o57A_ |
| not modelled | 99.9 | 18 | PDB header:dna binding protein Chain: A: PDB Molecule:pur operon repressor; PDBTitle: crystal structure of the purine operon repressor of2 bacillus subtilis
22 | c3kb8A_ |
| not modelled | 99.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 2.09 angstrom resolution structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames3 ancestor' in complex with gmp
23 | d1wd5a_ |
| not modelled | 99.8 | 26 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
24 | d1z7ga1 |
| not modelled | 99.7 | 17 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
25 | c3o7mD_ |
| not modelled | 99.7 | 18 | PDB header:transferase Chain: D: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 1.98 angstrom resolution crystal structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-2) from bacillus anthracis str. 'ames3 ancestor'
26 | d1g9sa_ |
| not modelled | 99.7 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
27 | d1o57a2 |
| not modelled | 99.7 | 21 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
28 | d1vdma1 |
| not modelled | 99.6 | 27 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
29 | c1yfzA_ |
| not modelled | 99.6 | 18 | PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis
30 | d1yfza1 |
| not modelled | 99.6 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
31 | d1cjba_ |
| not modelled | 99.6 | 16 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
32 | d2igba1 |
| not modelled | 99.6 | 22 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
33 | c2jbhA_ |
| not modelled | 99.6 | 13 | PDB header:transferase Chain: A: PDB Molecule:phosphoribosyltransferase domain-containing protein 1; PDBTitle: human phosphoribosyl transferase domain containing 1
34 | d1w30a_ |
| not modelled | 99.6 | 22 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
35 | d1ufra_ |
| not modelled | 99.6 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
36 | d1hgxa_ |
| not modelled | 99.6 | 12 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
37 | d1j7ja_ |
| not modelled | 99.6 | 17 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
38 | d1tc1a_ |
| not modelled | 99.6 | 16 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
39 | d1a3ca_ |
| not modelled | 99.6 | 22 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
40 | c2ywtA_ |
| not modelled | 99.6 | 17 | PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: crystal structure of hypoxanthine-guanine2 phosphoribosyltransferase with gmp from thermus3 thermophilus hb8
41 | d1y0ba1 |
| not modelled | 99.6 | 15 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
42 | d1p17b_ |
| not modelled | 99.6 | 16 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
43 | d1fsga_ |
| not modelled | 99.5 | 21 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
44 | c2dy0A_ |
| not modelled | 99.5 | 14 | PDB header:transferase Chain: A: PDB Molecule:adenine phosphoribosyltransferase; PDBTitle: crystal structure of project jw0458 from escherichia coli
45 | d1g2qa_ |
| not modelled | 99.5 | 14 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
46 | d1zn7a1 |
| not modelled | 99.5 | 14 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
47 | d2c4ka2 |
| not modelled | 99.5 | 17 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like
48 | d1pzma_ |
| not modelled | 99.5 | 14 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
49 | c2wnsB_ |
| not modelled | 99.5 | 16 | PDB header:transferase Chain: B: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: human orotate phosphoribosyltransferase (oprtase) domain of2 uridine 5'-monophosphate synthase (umps) in complex with3 its substrate orotidine 5'-monophosphate (omp)
50 | d1vcha1 |
| not modelled | 99.4 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
51 | c1pzmB_ |
| not modelled | 99.4 | 16 | PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: crystal structure of hgprt-ase from leishmania tarentolae in complex2 with gmp
52 | c3dezA_ |
| not modelled | 99.4 | 15 | PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 streptococcus mutans
53 | d2aeea1 |
| not modelled | 99.4 | 15 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
54 | d1l1qa_ |
| not modelled | 99.4 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
55 | c3efhB_ |
| not modelled | 99.3 | 15 | PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1
56 | c2c4kD_ |
| not modelled | 99.3 | 19 | PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39)
57 | c2p1zA_ |
| not modelled | 99.3 | 20 | PDB header:transferase Chain: A: PDB Molecule:phosphoribosyltransferase; PDBTitle: crystal structure of phosphoribosyltransferase from corynebacterium2 diphtheriae
58 | d1nula_ |
| not modelled | 99.3 | 20 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
59 | c2przB_ |
| not modelled | 99.3 | 19 | PDB header:transferase Chain: B: PDB Molecule:orotate phosphoribosyltransferase 1; PDBTitle: s. cerevisiae orotate phosphoribosyltransferase complexed2 with omp
60 | c3lpnB_ |
| not modelled | 99.3 | 24 | PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase2 from thermoplasma volcanium in complex with an atp analog (ampcpp).
61 | c3mjdA_ |
| not modelled | 99.2 | 16 | PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.9 angstrom crystal structure of orotate2 phosphoribosyltransferase (pyre) francisella tularensis.
62 | c1dkrB_ |
| not modelled | 99.2 | 23 | PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation.
63 | c2yzkC_ |
| not modelled | 99.2 | 22 | PDB header:transferase Chain: C: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 aeropyrum pernix
64 | d1lh0a_ |
| not modelled | 99.2 | 19 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
65 | d1mzva_ |
| not modelled | 99.2 | 13 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
66 | d1u9ya2 |
| not modelled | 99.2 | 23 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like
67 | d1dkua2 |
| not modelled | 99.2 | 29 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like
68 | d1qb7a_ |
| not modelled | 99.2 | 12 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
69 | c3n2lA_ |
| not modelled | 99.1 | 21 | PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 2.1 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase (pyre) from vibrio cholerae o1 biovar eltor3 str. n16961
70 | c3m3hA_ |
| not modelled | 99.1 | 28 | PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.75 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase from bacillus anthracis str. 'ames3 ancestor'
71 | c3qw4B_ |
| not modelled | 99.1 | 19 | PDB header:transferase, lyase Chain: B: PDB Molecule:ump synthase; PDBTitle: structure of leishmania donovani ump synthase
72 | c3dahB_ |
| not modelled | 99.0 | 16 | PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei
73 | c1u9yD_ |
| not modelled | 98.9 | 24 | PDB header:transferase Chain: D: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of phosphoribosyl diphosphate synthase2 from methanocaldococcus jannaschii
74 | c2jkzB_ |
| not modelled | 98.9 | 14 | PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'3 -monophosphate) (orthorhombic crystal form)
75 | d1i5ea_ |
| not modelled | 98.5 | 19 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
76 | d1o5oa_ |
| not modelled | 98.5 | 28 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
77 | d1dqna_ |
| not modelled | 98.4 | 15 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
78 | c2ehjA_ |
| not modelled | 98.4 | 16 | PDB header:transferase Chain: A: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of uracil phosphoribosyl transferase
79 | d1xtta1 |
| not modelled | 98.3 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
80 | c2e55D_ |
| not modelled | 98.2 | 15 | PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus
81 | d1v9sa1 |
| not modelled | 98.0 | 14 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
82 | d1bd3a_ |
| not modelled | 97.9 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases)
83 | c3dmpD_ |
| not modelled | 97.6 | 13 | PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei
84 | d1dkua1 |
| not modelled | 96.5 | 18 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like
85 | d1u9ya1 |
| not modelled | 96.1 | 16 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like
86 | d2c4ka1 |
| not modelled | 95.3 | 14 | Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosylpyrophosphate synthetase-like
87 | c1a1sA_ |
| not modelled | 90.2 | 17 | PDB header:transcarbamylase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: ornithine carbamoyltransferase from pyrococcus furiosus
88 | c2w37A_ |
| not modelled | 89.6 | 20 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, catabolic; PDBTitle: crystal structure of the hexameric catabolic ornithine2 transcarbamylase from lactobacillus hilgardii
89 | c2d92A_ |
| not modelled | 89.5 | 12 | PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the fifth pdz domain of inad-like2 protein
90 | d1v6ba_ |
| not modelled | 89.3 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
91 | d1x6va3 |
| not modelled | 89.2 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
92 | c3sdsA_ |
| not modelled | 88.6 | 15 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, mitochondrial; PDBTitle: crystal structure of a mitochondrial ornithine carbamoyltransferase2 from coccidioides immitis
93 | c3gd5D_ |
| not modelled | 87.1 | 17 | PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus
94 | c2yt7A_ |
| not modelled | 86.3 | 14 | PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3
95 | d1m1na_ |
| not modelled | 84.9 | 18 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
96 | c3mmnA_ |
| not modelled | 83.2 | 24 | PDB header:transferase Chain: A: PDB Molecule:histidine kinase homolog; PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
97 | c1vlvA_ |
| not modelled | 82.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution
98 | d1vaea_ |
| not modelled | 81.6 | 9 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
99 | c2jilA_ |
| not modelled | 79.1 | 18 | PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor interacting protein-1; PDBTitle: crystal structure of 2nd pdz domain of glutamate receptor2 interacting protein-1 (grip1)
100 | c2jikB_ |
| not modelled | 78.5 | 18 | PDB header:membrane protein Chain: B: PDB Molecule:synaptojanin-2 binding protein; PDBTitle: crystal structure of pdz domain of synaptojanin-2 binding2 protein
101 | d1qh8a_ |
| not modelled | 78.4 | 17 | Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein
102 | d1qlca_ |
| not modelled | 77.0 | 20 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
103 | d1wi2a_ |
| not modelled | 77.0 | 14 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
104 | c2vsvB_ |
| not modelled | 76.7 | 5 | PDB header:protein-binding Chain: B: PDB Molecule:rhophilin-2; PDBTitle: crystal structure of the pdz domain of human rhophilin-2
105 | c2opgB_ |
| not modelled | 76.6 | 20 | PDB header:structural protein Chain: B: PDB Molecule:multiple pdz domain protein; PDBTitle: the crystal structure of the 10th pdz domain of mpdz
106 | c1x45A_ |
| not modelled | 75.1 | 7 | PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:amyloid beta (a4) precursor protein-binding, PDBTitle: solution structure of the first pdz domain of amyloid beta2 a4 precursor protein-binding family a, member 1
107 | d2f62a1 |
| not modelled | 75.0 | 22 | Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase
108 | c2otcA_ |
| not modelled | 74.2 | 18 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: ornithine transcarbamoylase complexed with n-2 (phosphonacetyl)-l-ornithine
109 | d1rgra_ |
| not modelled | 74.0 | 30 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
110 | c2rgwD_ |
| not modelled | 73.1 | 16 | PDB header:transferase Chain: D: PDB Molecule:aspartate carbamoyltransferase; PDBTitle: catalytic subunit of m. jannaschii aspartate2 transcarbamoylase
111 | d1cjca1 |
| not modelled | 73.0 | 12 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like
112 | c3o8qB_ |
| not modelled | 72.6 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae
113 | d1m5za_ |
| not modelled | 72.6 | 18 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
114 | d1ueqa_ |
| not modelled | 72.3 | 14 | Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain
115 | d1u0sy_ |
| not modelled | 72.2 | 28 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
116 | c3eggC_ |
| not modelled | 71.6 | 16 | PDB header:hydrolase Chain: C: PDB Molecule:spinophilin; PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin
117 | c2ehrA_ |
| not modelled | 71.6 | 13 | PDB header:structural protein Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the sixth pdz domain of human inad-2 like protein
118 | c2d90A_ |
| not modelled | 71.5 | 21 | PDB header:protein binding Chain: A: PDB Molecule:pdz domain containing protein 1; PDBTitle: solution structure of the third pdz domain of pdz domain2 containing protein 1
119 | c2ef0A_ |
| not modelled | 71.2 | 19 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from thermus2 thermophilus
120 | c3updA_ |
| not modelled | 71.2 | 17 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: 2.9 angstrom crystal structure of ornithine carbamoyltransferase2 (argf) from vibrio vulnificus

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0