Phyre 2 alignment of P0AG16 with c1w9qB_

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Job Description | P0AG16
Confidence | 21.88% | Date | Thu Jan 5 11:27:50 GMT 2012
Rank | 496 | Aligned Residues | 41
% Identity | 15% | Template | c1w9qB_
PDB info | PDB header:cell adhesion | Chain: B: PDB Molecule:syntenin 1; | PDBTitle: crystal structure of the pdz tandem of human syntenin in2 complex with tnefaf peptide
Resolution | 1.7 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 359 | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | D | K | N | V | L | L | V | D | D | S | I | V | R | G | T | T | S | E | Q | I | I | E | M | A | R | E | A | G | A | K | K | V | Y | L | A | S | A | A | P | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | G | D | Q | V | L | Q | I | N | G | E | N | C | A | G | W | S | S | D | K | A | H | K | V | L | K | Q | A | F | G | E | K | I | T | M | T | I | R | D | R | P
Template Known Secondary structure |  | T | T |  |  |  |  |  |  | T | T |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 154 | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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