 |
| Job Description | P0AFG3 | | Confidence | 20.05% | Date | Wed Jan 25 15:20:33 GMT 2012 |
| Rank | 158 | Aligned Residues | 24 |
| % Identity | 17% | Template | c1qzwC_ |
| PDB info |
PDB header:signaling protein/rna | Chain: C: PDB Molecule:signal recognition 54 kda protein; |
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
|
| Resolution | 4.10 Å |
|
|   |   |
433 | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
V | T | R | L | A | L | D | F | R | N | T | F | K | R | D | V | F | I | D | L | V | C | Y | R |
| Query Conservation |   |
|   |   |
|
|   |
|
|
|   |   |
|   |
|
|
|
|
|
|
|
|   |
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|
|
|
|   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|
|
|   |
|
| Template Sequence |   |
A | G | K | L | A | Y | F | Y | K | K | R | G | Y | K | V | G | L | V | A | A | D | V | Y | R |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T | S |
|
|
|
| B |
|
|
|
|
| S | S |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
113 | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|