Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77468
DateThu Jan 5 12:29:32 GMT 2012
Unique Job IDe4d3a048f955a734

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3rfzB_
Top template information
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
Confidence and coverage
Confidence:100.0% Coverage: 89%
768 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG
Secondary structure 
SS confidence 
Disorder  ?????????????
????
?
?????????
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP
Secondary structure 
SS confidence 
Disorder  ?????
???????
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL
Secondary structure 
SS confidence 
Disorder  ???????
?
???????
??????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
Secondary structure 
SS confidence 
Disorder 
??????
?
?????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT
Secondary structure 
SS confidence 
Disorder 
?
?
??
????
??????????
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG
Secondary structure 
SS confidence 
Disorder 
?????
?????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG
Secondary structure 
SS confidence 
Disorder  ?
???????
?
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  NWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
Secondary structure 
SS confidence 
Disorder 
????????????
?
??
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  AYRRMEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYW
Secondary structure 
SS confidence 
Disorder  ??????????????????????????????????
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  NTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRE
Secondary structure 
SS confidence 
Disorder  ??????
????????
??????????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  NALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQA
Secondary structure 
SS confidence 
Disorder  ??????
??????
????
????
?????????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  AYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQT
Secondary structure 
SS confidence 
Disorder 
?????
???
?
??
?
???
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  GILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIG
Secondary structure 
SS confidence 
Disorder  ???
?
???
?
?
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  VRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRC
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........850.........860.......
Sequence  IAHYVLPKQSLQQAVTVISAVCTHPGS
Secondary structure 
SS confidence 
Disorder 
??????
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3rfz chain B

3D model

Region: 62 - 864
Aligned: 768
Modelled: 784
Confidence: 100.0%
Identity: 48%
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate

Phyre2

PDB 3ohn chain A

3D model

Region: 179 - 686
Aligned: 459
Modelled: 477
Confidence: 100.0%
Identity: 50%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain

Phyre2

PDB 2vqi chain A

3D model

Region: 180 - 690
Aligned: 465
Modelled: 478
Confidence: 100.0%
Identity: 25%
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 38 - 162
Aligned: 120
Modelled: 125
Confidence: 100.0%
Identity: 39%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 60 - 179
Aligned: 115
Modelled: 120
Confidence: 100.0%
Identity: 39%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdx chain A domain 1

3D model

Region: 60 - 165
Aligned: 101
Modelled: 106
Confidence: 99.9%
Identity: 34%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3fcg chain B

3D model

Region: 279 - 354
Aligned: 70
Modelled: 76
Confidence: 99.9%
Identity: 43%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher

Phyre2

PDB 2xet chain B

3D model

Region: 782 - 864
Aligned: 83
Modelled: 83
Confidence: 99.8%
Identity: 35%
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

Phyre2

PDB 3l48 chain B

3D model

Region: 780 - 864
Aligned: 79
Modelled: 85
Confidence: 99.7%
Identity: 29%
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher

Phyre2

PDB 3pe9 chain B

3D model

Region: 286 - 354
Aligned: 66
Modelled: 69
Confidence: 94.5%
Identity: 12%
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3pdg chain A

3D model

Region: 288 - 345
Aligned: 56
Modelled: 58
Confidence: 94.4%
Identity: 7%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1w0n chain A

3D model

Region: 263 - 342
Aligned: 80
Modelled: 80
Confidence: 88.3%
Identity: 20%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 36 carbohydrate binding module, CBM36

Phyre2

PDB 3pe9 chain D

3D model

Region: 288 - 354
Aligned: 64
Modelled: 67
Confidence: 88.0%
Identity: 13%
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1d2p chain A

3D model

Region: 291 - 349
Aligned: 59
Modelled: 59
Confidence: 85.6%
Identity: 17%
PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus

Phyre2

PDB 3pe9 chain A

3D model

Region: 297 - 343
Aligned: 44
Modelled: 44
Confidence: 84.7%
Identity: 14%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3pe9 chain C

3D model

Region: 297 - 343
Aligned: 44
Modelled: 47
Confidence: 84.7%
Identity: 14%
PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 2nsm chain A

3D model

Region: 783 - 831
Aligned: 48
Modelled: 49
Confidence: 78.1%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain

Phyre2

PDB 1h8l chain A

3D model

Region: 777 - 851
Aligned: 72
Modelled: 75
Confidence: 73.3%
Identity: 8%
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa

Phyre2

PDB 2boi chain A

3D model

Region: 278 - 384
Aligned: 99
Modelled: 107
Confidence: 72.8%
Identity: 13%
PDB header:lectin
Chain: A: PDB Molecule:cv-iil lectin;
PDBTitle: 1.1a structure of chromobacterium violaceum lectin cv2l in2 complex with alpha-methyl-fucoside

Phyre2

PDB 2vnv chain C

3D model

Region: 278 - 391
Aligned: 110
Modelled: 114
Confidence: 70.5%
Identity: 11%
PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution

Phyre2
1
c3rfzB_
2
c3ohnA_
3
c2vqiA_
4
d3bwud1
5
d1zdva1
6
d1zdxa1
7
c3fcgB_
8
c2xetB_
9
c3l48B_
10
c3pe9B_
11
c3pdgA_
12
d1w0na_
13
c3pe9D_
14
c1d2pA_
15
c3pe9A_
16
c3pe9C_
17
c2nsmA_
18
c1h8lA_
19
c2boiA_
20
c2vnvC_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfzB_
100.0 48 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
2c3ohnA_
100.0 50 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
3c2vqiA_
100.0 25 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
4d3bwud1
100.0 39 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
5d1zdva1
100.0 39 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
6d1zdxa1
99.9 34 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
7c3fcgB_
99.9 43 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
8c2xetB_
99.8 35 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
9c3l48B_
99.7 29 PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
10c3pe9B_
94.5 12 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
11c3pdgA_
94.4 7 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
12d1w0na_
88.3 20 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 36 carbohydrate binding module, CBM36
13c3pe9D_
88.0 13 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
14c1d2pA_
85.6 17 PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus
15c3pe9A_
84.7 14 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
16c3pe9C_
84.7 14 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
17c2nsmA_
78.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
18c1h8lA_
73.3 8 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
19c2boiA_
72.8 13 PDB header:lectin
Chain: A: PDB Molecule:cv-iil lectin;
PDBTitle: 1.1a structure of chromobacterium violaceum lectin cv2l in2 complex with alpha-methyl-fucoside
20c2vnvC_
70.5 11 PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
21c3c12A_
not modelled 68.5 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
22d1h8la1
not modelled 67.9 6 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
23c3bryB_
not modelled 65.8 16 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
24c2pz4A_
not modelled 65.3 16 PDB header:cell adhesion
Chain: A: PDB Molecule:protein gbs052;
PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-positive2 pathogen streptococcus agalactiae
25c1uwyA_
not modelled 58.2 17 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
26c2xr4A_
not modelled 57.7 12 PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: c-terminal domain of bc2l-c lectin from burkholderia cenocepacia
27c1ug9A_
not modelled 56.7 24 PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
28c1u00A_
not modelled 54.8 18 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
29c3fn9B_
not modelled 53.0 11 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
30d1uwya1
not modelled 52.5 14 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
31c2bpbA_
not modelled 51.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a;
PDBTitle: sulfite dehydrogenase from starkeya novella
32c2x5pA_
not modelled 51.3 18 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
33c3n8eA_
not modelled 51.3 16 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
34c1bprA_
not modelled 49.9 20 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
35c2op6A_
not modelled 49.7 16 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
36c3cmgA_
not modelled 49.1 7 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
37c3dpqE_
not modelled 48.8 20 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
38d1uzva_
not modelled 46.5 10 Fold:Calcium-mediated lectin
Superfamily:Calcium-mediated lectin
Family:Calcium-mediated lectin
39d1u00a2
not modelled 44.3 19 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
40c2r32A_
not modelled 40.8 27 PDB header:immune system
Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand
PDBTitle: crystal structure of human gitrl variant
41c3mn8A_
not modelled 39.5 19 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
42d1dkza2
not modelled 36.7 21 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
43d1yuwa1
not modelled 35.9 16 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
44d1aoza2
not modelled 34.4 10 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
45c3brzA_
not modelled 33.2 9 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
46d1v8ha1
not modelled 31.9 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
47c3dqgC_
not modelled 31.7 20 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
48c3b9eA_
not modelled 30.6 4 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
49c3dwoX_
not modelled 28.9 13 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
50d1ci3m2
not modelled 26.1 21 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
51d2dj4a1
not modelled 25.4 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
52c3pddA_
not modelled 25.0 13 PDB header:unknown function
Chain: A: PDB Molecule:glycoside hydrolase, family 9;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
53d1edqa1
not modelled 24.9 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
54d2a9da1
not modelled 24.8 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Molybdenum-containing oxidoreductases-like dimerisation domain
55d2vzsa4
not modelled 24.8 8 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
56d2dmca1
not modelled 24.7 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
57c3rghA_
not modelled 23.4 20 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
58d2chha1
not modelled 23.4 9 Fold:Calcium-mediated lectin
Superfamily:Calcium-mediated lectin
Family:Calcium-mediated lectin
59c2oxgE_
not modelled 23.0 18 PDB header:transport protein
Chain: E: PDB Molecule:soxz protein;
PDBTitle: the soxyz complex of paracoccus pantotrophus
60d2dmba1
not modelled 22.7 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
61d2e9ia1
not modelled 22.4 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
62d1wlha1
not modelled 22.3 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
63d1e2wa2
not modelled 21.4 22 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
64d1yq2a3
not modelled 19.6 21 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
65d2je8a4
not modelled 18.4 8 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
66c2lgeA_
not modelled 18.2 22 PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the calcium-bound form of the protein yp_001302112.12 from parabacteroides distasonis
67d2j3sa2
not modelled 17.9 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
68c2ww8A_
not modelled 17.8 13 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
69c2a9dB_
not modelled 17.7 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: crystal structure of recombinant chicken sulfite oxidase with arg at2 residue 161
70d2d7oa1
not modelled 17.4 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
71d2d7pa1
not modelled 16.7 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
72c3d33B_
not modelled 16.6 12 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
73d2dica1
not modelled 16.5 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
74c2e9jA_
not modelled 16.1 20 PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b
75c3k1dA_
not modelled 16.1 15 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
76c2ds4A_
not modelled 16.0 27 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
77d2d7na1
not modelled 15.8 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
78d1uura3
not modelled 15.8 17 Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
79d2di8a1
not modelled 15.8 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
80c1w2tE_
not modelled 15.6 18 PDB header:hydrolase
Chain: E: PDB Molecule:beta fructosidase;
PDBTitle: beta-fructosidase from thermotoga maritima in complex with2 raffinose
81d1qfha2
not modelled 15.5 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
82d2w0pa1
not modelled 15.5 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
83c2dcjA_
not modelled 15.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:xylanase j;
PDBTitle: a two-domain structure of alkaliphilic xynj from bacillus sp. 41m-1
84d1qfha1
not modelled 15.1 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
85d1d2oa1
not modelled 14.8 19 Fold:Prealbumin-like
Superfamily:Cna protein B-type domain
Family:Cna protein B-type domain
86c2jf1A_
not modelled 14.5 40 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
87d2ja9a2
not modelled 14.2 26 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
88d2d7ma1
not modelled 14.2 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
89d1jjcb5
not modelled 14.1 18 Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
90d1v05a_
not modelled 14.0 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
91d2diaa1
not modelled 13.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
92d2diba1
not modelled 13.8 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
93d2je6i3
not modelled 13.6 17 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
94d2di9a1
not modelled 13.1 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
95c3cnkB_
not modelled 13.1 27 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the dimerization domain of human2 filamin a
96d2ag4a1
not modelled 12.7 15 Fold:Ganglioside M2 (gm2) activator
Superfamily:Ganglioside M2 (gm2) activator
Family:Ganglioside M2 (gm2) activator
97c2w0pB_
not modelled 12.6 40 PDB header:cell adhesion
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
98c2brqA_
not modelled 12.6 40 PDB header:structural protein
Chain: A: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
99d1y4wa1
not modelled 12.5 11 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Glycosyl hydrolases family 32 C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0