Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AGC3
DateThu Jan 5 11:28:44 GMT 2012
Unique Job IDe4cf65c76a35f8f3

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1slyA_
Top template information
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
Confidence and coverage
Confidence:100.0% Coverage: 96%
618 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAWDNRQMDVVEQMMPGLK
Secondary structure 
SS confidence 
Disorder  ???
???????????
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  DYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLA
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  FSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD
Secondary structure 
SS confidence 
Disorder 
???
?
?????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF
Secondary structure 
SS confidence 
Disorder 
?
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAK
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  WRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG
Secondary structure 
SS confidence 
Disorder 
??????
??
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  REAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMY
Secondary structure 
SS confidence 
Disorder  ?
?
?????????
?????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  WNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAY
Secondary structure 
SS confidence 
Disorder 
??
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  NDLFKRYTSGKEIPQSYAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPG
Secondary structure 
SS confidence 
Disorder  ?
??
??
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  YSSPGQLLDPETNINIGTSYLQYVYQQFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAV
Secondary structure 
SS confidence 
Disorder 
??
?
????
Disorder confidence 
 
   .........610.........620.........630.........640.....
Sequence  AFVESIPFSETRGYVKNVLAYDAYYRYFMGDKPTLMSATEWGRRY
Secondary structure 
SS confidence 
Disorder 
??????
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1sly chain A

3D model

Region: 28 - 645
Aligned: 618
Modelled: 618
Confidence: 100.0%
Identity: 100%
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a

Phyre2

PDB 1qsa chain A domain 1

3D model

Region: 28 - 477
Aligned: 450
Modelled: 450
Confidence: 100.0%
Identity: 100%
Fold: alpha-alpha superhelix
Superfamily: Bacterial muramidases
Family: Bacterial muramidases

Phyre2

PDB 1qsa chain A domain 2

3D model

Region: 478 - 645
Aligned: 168
Modelled: 168
Confidence: 100.0%
Identity: 100%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: Bacterial muramidase, catalytic domain

Phyre2

PDB 2y8p chain A

3D model

Region: 472 - 625
Aligned: 154
Modelled: 154
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli

Phyre2

PDB 3mgw chain A

3D model

Region: 454 - 627
Aligned: 145
Modelled: 148
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme

Phyre2

PDB 3gxk chain B

3D model

Region: 447 - 626
Aligned: 151
Modelled: 154
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9

Phyre2

PDB 1gbs chain A

3D model

Region: 447 - 626
Aligned: 151
Modelled: 154
Confidence: 100.0%
Identity: 25%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: G-type lysozyme

Phyre2

PDB 1w3b chain A

3D model

Region: 37 - 374
Aligned: 335
Modelled: 338
Confidence: 99.4%
Identity: 12%
Fold: alpha-alpha superhelix
Superfamily: TPR-like
Family: Tetratricopeptide repeat (TPR)

Phyre2

PDB 2xpi chain A

3D model

Region: 30 - 466
Aligned: 413
Modelled: 416
Confidence: 99.4%
Identity: 10%
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9;
PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1

Phyre2

PDB 3hym chain B

3D model

Region: 101 - 374
Aligned: 264
Modelled: 264
Confidence: 99.0%
Identity: 8%
PDB header:cell cycle, ligase
Chain: B: PDB Molecule:cell division cycle protein 16 homolog;
PDBTitle: insights into anaphase promoting complex tpr subdomain2 assembly from a cdc26-apc6 structure

Phyre2

PDB 1fch chain B

3D model

Region: 107 - 374
Aligned: 258
Modelled: 265
Confidence: 99.0%
Identity: 10%
PDB header:signaling protein
Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor;
PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5

Phyre2

PDB 3cvp chain A

3D model

Region: 107 - 374
Aligned: 248
Modelled: 249
Confidence: 98.8%
Identity: 8%
PDB header:transport protein
Chain: A: PDB Molecule:peroxisome targeting signal 1 receptor pex5;
PDBTitle: structure of peroxisomal targeting signal 1 (pts1) binding2 domain of trypanosoma brucei peroxin 5 (tbpex5)complexed3 to pts1 peptide (10-skl)

Phyre2

PDB 3pe3 chain D

3D model

Region: 125 - 374
Aligned: 168
Modelled: 168
Confidence: 98.8%
Identity: 15%
PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate

Phyre2

PDB 3mkr chain A

3D model

Region: 106 - 373
Aligned: 251
Modelled: 255
Confidence: 98.8%
Identity: 11%
PDB header:transport protein
Chain: A: PDB Molecule:coatomer subunit epsilon;
PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat

Phyre2

PDB 2ho1 chain B

3D model

Region: 129 - 377
Aligned: 204
Modelled: 204
Confidence: 98.7%
Identity: 9%
PDB header:protein binding
Chain: B: PDB Molecule:type 4 fimbrial biogenesis protein pilf;
PDBTitle: functional characterization of pseudomonas aeruginosa pilf

Phyre2

PDB 1fch chain A

3D model

Region: 107 - 373
Aligned: 256
Modelled: 264
Confidence: 98.7%
Identity: 9%
Fold: alpha-alpha superhelix
Superfamily: TPR-like
Family: Tetratricopeptide repeat (TPR)

Phyre2

PDB 3bkh chain A

3D model

Region: 482 - 606
Aligned: 125
Modelled: 125
Confidence: 98.7%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144

Phyre2

PDB 1qus chain A

3D model

Region: 480 - 563
Aligned: 81
Modelled: 84
Confidence: 98.6%
Identity: 28%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: Bacterial muramidase, catalytic domain

Phyre2

PDB 2vq2 chain A

3D model

Region: 129 - 377
Aligned: 205
Modelled: 205
Confidence: 98.6%
Identity: 12%
PDB header:structural protein
Chain: A: PDB Molecule:putative fimbrial biogenesis and twitching
PDBTitle: crystal structure of pilw, widely conserved type iv pilus2 biogenesis factor

Phyre2

PDB 3dra chain A

3D model

Region: 125 - 377
Aligned: 253
Modelled: 253
Confidence: 98.5%
Identity: 6%
PDB header:transferase
Chain: A: PDB Molecule:protein
PDBTitle: candida albicans protein geranylgeranyltransferase-i2 complexed with ggpp

Phyre2
1
c1slyA_
2
d1qsaa1
3
d1qsaa2
4
c2y8pA_
5
c3mgwA_
6
c3gxkB_
7
d1gbsa_
8
d1w3ba_
9
c2xpiA_
10
c3hymB_
11
c1fchB_
12
c3cvpA_
13
c3pe3D_
14
c3mkrA_
15
c2ho1B_
16
d1fcha_
17
c3bkhA_
18
d1qusa_
19
c2vq2A_
20
c3draA_
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24
25
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1slyA_
100.0 100 PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
2d1qsaa1
100.0 100 Fold:alpha-alpha superhelix
Superfamily:Bacterial muramidases
Family:Bacterial muramidases
3d1qsaa2
100.0 100 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
4c2y8pA_
100.0 18 PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
5c3mgwA_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme
6c3gxkB_
100.0 22 PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9
7d1gbsa_
100.0 25 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:G-type lysozyme
8d1w3ba_
99.4 12 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
9c2xpiA_
99.4 10 PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9;
PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1
10c3hymB_
99.0 8 PDB header:cell cycle, ligase
Chain: B: PDB Molecule:cell division cycle protein 16 homolog;
PDBTitle: insights into anaphase promoting complex tpr subdomain2 assembly from a cdc26-apc6 structure
11c1fchB_
99.0 10 PDB header:signaling protein
Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor;
PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5
12c3cvpA_
98.8 8 PDB header:transport protein
Chain: A: PDB Molecule:peroxisome targeting signal 1 receptor pex5;
PDBTitle: structure of peroxisomal targeting signal 1 (pts1) binding2 domain of trypanosoma brucei peroxin 5 (tbpex5)complexed3 to pts1 peptide (10-skl)
13c3pe3D_
98.8 15 PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
14c3mkrA_
98.8 11 PDB header:transport protein
Chain: A: PDB Molecule:coatomer subunit epsilon;
PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat
15c2ho1B_
98.7 9 PDB header:protein binding
Chain: B: PDB Molecule:type 4 fimbrial biogenesis protein pilf;
PDBTitle: functional characterization of pseudomonas aeruginosa pilf
16d1fcha_
98.7 9 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
17c3bkhA_
98.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
18d1qusa_
98.6 28 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
19c2vq2A_
98.6 12 PDB header:structural protein
Chain: A: PDB Molecule:putative fimbrial biogenesis and twitching
PDBTitle: crystal structure of pilw, widely conserved type iv pilus2 biogenesis factor
20c3draA_
98.5 6 PDB header:transferase
Chain: A: PDB Molecule:protein
PDBTitle: candida albicans protein geranylgeranyltransferase-i2 complexed with ggpp
21c3iegB_
not modelled 98.5 11 PDB header:chaperone
Chain: B: PDB Molecule:dnaj homolog subfamily c member 3;
PDBTitle: crystal structure of p58(ipk) tpr domain at 2.5 a
22c2r5sB_
not modelled 98.4 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp0806;
PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633
23d2ooea1
not modelled 98.3 11 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:HAT/Suf repeat
24c2uy1A_
not modelled 98.3 9 PDB header:rna-binding protein
Chain: A: PDB Molecule:cleavage stimulation factor 77;
PDBTitle: crystal structure of cstf-77
25d1hz4a_
not modelled 98.3 12 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Transcription factor MalT domain III
26c2y4tA_
not modelled 98.3 9 PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily c member 3;
PDBTitle: crystal structure of the human co-chaperone p58(ipk)
27c3urzB_
not modelled 98.2 13 PDB header:protein binding
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein (bacova_03105) from2 bacteroides ovatus atcc 8483 at 2.19 a resolution
28d1xnfa_
not modelled 98.2 9 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
29c3fp4A_
not modelled 98.1 11 PDB header:transport protein
Chain: A: PDB Molecule:tpr repeat-containing protein yhr117w;
PDBTitle: crystal structure of tom71 complexed with ssa1 c-terminal2 fragment
30c2xcbA_
not modelled 98.1 11 PDB header:protein binding
Chain: A: PDB Molecule:regulatory protein pcrh;
PDBTitle: crystal structure of pcrh in complex with the chaperone2 binding region of popd
31d1dcea1
not modelled 98.1 10 Fold:alpha-alpha superhelix
Superfamily:Protein prenylyltransferase
Family:Protein prenylyltransferase
32c3gyzB_
not modelled 98.0 11 PDB header:chaperone
Chain: B: PDB Molecule:chaperone protein ipgc;
PDBTitle: crystal structure of ipgc from shigella flexneri
33c3qdnA_
not modelled 98.0 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin protein;
PDBTitle: putative thioredoxin protein from salmonella typhimurium
34c2q7fA_
not modelled 98.0 13 PDB header:protein binding
Chain: A: PDB Molecule:yrrb protein;
PDBTitle: crystal structure of yrrb: a tpr protein with an unusual peptide-2 binding site
35c3ly8A_
not modelled 97.9 9 PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional activator cadc;
PDBTitle: crystal structure of mutant d471e of the periplasmic domain of cadc
36c2hyzA_
not modelled 97.8 11 PDB header:de novo protein
Chain: A: PDB Molecule:synthetic consensus tpr protein;
PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix2 (orthorombic crystal form)
37c2katA_
not modelled 97.6 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of protein bpp2914 from bordetella2 parapertussis. northeast structural genomics consortium3 target bpr206
38c3q75A_
not modelled 97.6 17 PDB header:transferase
Chain: A: PDB Molecule:farnesyltransferase alpha subunit;
PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpt-ii and tkcvvm peptide
39d1hxia_
not modelled 97.6 7 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
40c2pl2A_
not modelled 97.5 14 PDB header:protein binding
Chain: A: PDB Molecule:hypothetical conserved protein ttc0263;
PDBTitle: crystal structure of ttc0263: a thermophilic tpr protein in thermus2 thermophilus hb27
41c2xevB_
not modelled 97.5 15 PDB header:metal binding
Chain: B: PDB Molecule:ybgf;
PDBTitle: crystal structure of the tpr domain of xanthomonas2 campestris ybgf
42c2kcvA_
not modelled 97.5 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tetratricopeptide repeat domain protein;
PDBTitle: solution nmr structure of tetratricopeptide repeat domain2 protein sru_0103 from salinibacter ruber, northeast3 structural genomics consortium (nesg) target srr115c
43c1wao4_
not modelled 97.5 12 PDB header:hydrolase
Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5;
PDBTitle: pp5 structure
44c2yhcA_
not modelled 97.4 10 PDB header:membrane protein
Chain: A: PDB Molecule:upf0169 lipoprotein yfio;
PDBTitle: structure of bamd from e. coli
45c2c2lD_
not modelled 97.4 13 PDB header:chaperone
Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein;
PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase
46c3as5A_
not modelled 97.4 11 PDB header:protein binding
Chain: A: PDB Molecule:mama;
PDBTitle: mama amb-1 p212121
47c3q49B_
not modelled 97.4 14 PDB header:ligase/chaperone
Chain: B: PDB Molecule:stip1 homology and u box-containing protein 1;
PDBTitle: crystal structure of the tpr domain of chip complexed with hsp70-c2 peptide
48d1elwa_
not modelled 97.3 15 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
49c3qkyA_
not modelled 97.3 9 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfio;
PDBTitle: crystal structure of rhodothermus marinus bamd
50c2e2eA_
not modelled 97.3 12 PDB header:lyase
Chain: A: PDB Molecule:formate-dependent nitrite reductase complex nrfg subunit;
PDBTitle: tpr domain of nrfg mediates the complex formation between heme lyase2 and formate-dependent nitrite reductase in escherichia coli o157:h7
51c2vyiA_
not modelled 97.2 12 PDB header:chaperone
Chain: A: PDB Molecule:sgta protein;
PDBTitle: crystal structure of the tpr domain of human sgt
52d1hh8a_
not modelled 97.2 9 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
53d2c2la1
not modelled 97.2 13 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
54d1d8da_
not modelled 97.2 12 Fold:alpha-alpha superhelix
Superfamily:Protein prenylyltransferase
Family:Protein prenylyltransferase
55c3mv3B_
not modelled 97.1 13 PDB header:protein transport
Chain: B: PDB Molecule:coatomer subunit epsilon;
PDBTitle: crystal structure of a-cop in complex with e-cop
56c2kckA_
not modelled 97.1 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tpr repeat;
PDBTitle: nmr solution structure of the northeast structural genomics2 consortium (nesg) target mrr121a
57d2buga1
not modelled 97.1 12 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
58c2vsnB_
not modelled 97.0 16 PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
59c2if4A_
not modelled 96.9 9 PDB header:signaling protein
Chain: A: PDB Molecule:atfkbp42;
PDBTitle: crystal structure of a multi-domain immunophilin from2 arabidopsis thaliana
60c3k9iA_
not modelled 96.9 10 PDB header:protein binding
Chain: A: PDB Molecule:bh0479 protein;
PDBTitle: crystal structure of putative protein binding protein (np_241345.1)2 from bacillus halodurans at 2.71 a resolution
61c3nf1A_
not modelled 96.9 12 PDB header:motor protein, transport protein
Chain: A: PDB Molecule:kinesin light chain 1;
PDBTitle: crystal structure of the tpr domain of kinesin light chain 1
62c2avpA_
not modelled 96.8 13 PDB header:de novo protein
Chain: A: PDB Molecule:synthetic consensus tpr protein;
PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix
63c2dbaA_
not modelled 96.8 14 PDB header:structural protein
Chain: A: PDB Molecule:smooth muscle cell associated protein-1, isoform
PDBTitle: the solution structure of the tetratrico peptide repeat of2 human smooth muscle cell associated protein-1, isoform 2
64c1kt0A_
not modelled 96.5 9 PDB header:isomerase
Chain: A: PDB Molecule:51 kda fk506-binding protein;
PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes
65d2ff4a2
not modelled 96.5 11 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:BTAD-like
66c2kc7A_
not modelled 96.4 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bfr218_protein;
PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218
67d1a17a_
not modelled 96.2 12 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
68c2l6jA_
not modelled 96.2 13 PDB header:protein binding
Chain: A: PDB Molecule:tpr repeat-containing protein associated with hsp90;
PDBTitle: tah1 complexed by meevd
69d1zbpa1
not modelled 96.1 10 Fold:ImpE-like
Superfamily:ImpE-like
Family:ImpE-like
70c3sz7A_
not modelled 96.0 6 PDB header:chaperone regulator
Chain: A: PDB Molecule:hsc70 cochaperone (sgt);
PDBTitle: crystal structure of the sgt2 tpr domain from aspergillus fumigatus
71c1na3A_
not modelled 96.0 6 PDB header:de novo protein
Chain: A: PDB Molecule:designed protein ctpr2;
PDBTitle: design of stable alpha-helical arrays from an idealized tpr2 motif
72c2gw1A_
not modelled 96.0 11 PDB header:protein transport
Chain: A: PDB Molecule:mitochondrial precursor proteins import receptor;
PDBTitle: crystal structure of the yeast tom70
73c1xsfA_
not modelled 95.9 23 PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
74c2vgxA_
not modelled 95.8 12 PDB header:chaperone
Chain: A: PDB Molecule:chaperone sycd;
PDBTitle: structure of the yersinia enterocolitica type iii secretion2 translocator chaperone sycd
75d1nzna_
not modelled 95.8 13 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
76d1tjca_
not modelled 95.7 14 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
77c1tnoI_
not modelled 95.6 12 PDB header:transferase
Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit;
PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b
78c1ihgA_
not modelled 95.6 11 PDB header:isomerase
Chain: A: PDB Molecule:cyclophilin 40;
PDBTitle: bovine cyclophilin 40, monoclinic form
79d1elra_
not modelled 95.6 8 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
80d1xsfa1
not modelled 95.6 23 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:RPF-like
81d1iyga_
not modelled 95.6 13 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
82c3beeB_
not modelled 95.5 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative yfre protein;
PDBTitle: crystal structure of putative yfre protein from vibrio2 parahaemolyticus
83d2hr2a1
not modelled 95.1 19 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:CT2138-like
84d2h6fa1
not modelled 95.0 12 Fold:alpha-alpha superhelix
Superfamily:Protein prenylyltransferase
Family:Protein prenylyltransferase
85c3ct5A_
not modelled 94.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail
86d1y8ma1
not modelled 94.8 14 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
87c3q15A_
not modelled 94.7 8 PDB header:hydrolase/kinase
Chain: A: PDB Molecule:response regulator aspartate phosphatase h;
PDBTitle: crystal structure of raph complexed with spo0f
88c3fflC_
not modelled 94.7 13 PDB header:cell cycle
Chain: C: PDB Molecule:anaphase-promoting complex subunit 7;
PDBTitle: crystal structure of the n-terminal domain of anaphase-2 promoting complex subunit 7
89d1zu2a1
not modelled 94.6 9 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
90d1pc2a_
not modelled 94.3 13 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
91c3gw4B_
not modelled 93.8 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein from deinococcus2 radiodurans. northeast structural genomics consortium target drr162b.
92c1qz2B_
not modelled 92.4 7 PDB header:isomerase/chaperone
Chain: B: PDB Molecule:fk506-binding protein 4;
PDBTitle: crystal structure of fkbp52 c-terminal domain complex with2 the c-terminal peptide meevd of hsp90
93c3eo5A_
not modelled 92.3 23 PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb
94c2fbdB_
not modelled 91.9 29 PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.
95d1gd6a_
not modelled 91.8 14 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
96d1iiza_
not modelled 91.7 17 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
97d1hhla_
not modelled 91.3 17 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
98d1kt1a1
not modelled 90.9 7 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
99d2vb1a1
not modelled 90.9 17 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
100d1ghla_
not modelled 90.5 17 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
101c2fbnA_
not modelled 90.4 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase, putative;
PDBTitle: plasmodium falciparum putative fk506-binding protein2 pfl2275c, c-terminal tpr-containing domain
102d2fbna1
not modelled 90.4 14 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
103d2pqrb1
not modelled 90.1 13 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
104d1lsga1
not modelled 89.3 29 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
105c3csqC_
not modelled 88.6 19 PDB header:hydrolase
Chain: C: PDB Molecule:morphogenesis protein 1;
PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
106d1lmqa_
not modelled 88.0 25 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
107d1jsea_
not modelled 88.0 29 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
108c2goiC_
not modelled 87.8 15 PDB header:cell adhesion, sugar binding protein
Chain: C: PDB Molecule:sperm lysozyme-like protein 1;
PDBTitle: crystal structure of mouse sperm c-type lysozyme-like2 protein 1
109c3rkvA_
not modelled 87.8 9 PDB header:isomerase
Chain: A: PDB Molecule:putative peptidylprolyl isomerase;
PDBTitle: c-terminal domain of protein c56c10.10, a putative peptidylprolyl2 isomerase, from caenorhabditis elegans
110d1juga_
not modelled 87.3 17 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
111c2z2fA_
not modelled 86.3 20 PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme c-2;
PDBTitle: x-ray crystal structure of bovine stomach lysozyme
112d1qqya_
not modelled 85.9 25 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
113c2ff4B_
not modelled 85.6 10 PDB header:transcription
Chain: B: PDB Molecule:probable regulatory protein embr;
PDBTitle: mycobacterium tuberculosis embr in complex with low affinity2 phosphopeptide
114c3sf4B_
not modelled 85.1 7 PDB header:signaling protein/protein binding
Chain: B: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: crystal structure of the complex between the conserved cell polarity2 proteins inscuteable and lgn
115d2eqla_
not modelled 84.8 42 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
116d1ivma_
not modelled 84.4 24 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
117d2onda1
not modelled 84.0 11 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:HAT/Suf repeat
118d1p5qa1
not modelled 82.5 10 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
119d1f6sa_
not modelled 82.3 25 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
120c3ulqA_
not modelled 80.0 9 PDB header:gene regulation/transcription activator
Chain: A: PDB Molecule:response regulator aspartate phosphatase f;
PDBTitle: crystal structure of the anti-activator rapf complexed with the2 response regulator coma dna binding domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0