BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (375 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P09155 Ribonuclease D n=146 Tax=Gammaproteobacteria Rep... 768 0.0 UniRef50_C9XUE4 Ribonuclease D n=1 Tax=Cronobacter turicensis Re... 599 e-170 UniRef50_C6C608 Ribonuclease D n=19 Tax=Gammaproteobacteria RepI... 530 e-149 UniRef50_C4K3X6 RNase D, processes tRNA n=9 Tax=Enterobacteriace... 400 e-110 UniRef50_B7VI13 Ribonuclease D n=22 Tax=Gammaproteobacteria RepI... 359 1e-97 UniRef50_D0M5H9 Ribonuclease D n=15 Tax=Gammaproteobacteria RepI... 352 2e-95 UniRef50_A5F6R9 Ribonuclease D n=31 Tax=Vibrio RepID=A5F6R9_VIBC3 347 6e-94 UniRef50_B8F419 Ribonuclease D n=8 Tax=Pasteurellaceae RepID=B8F... 333 4e-90 UniRef50_A4SMN8 Ribonuclease D n=2 Tax=Aeromonas RepID=A4SMN8_AERS4 310 5e-83 UniRef50_Q15S24 Ribonuclease D n=1 Tax=Pseudoalteromonas atlanti... 304 4e-81 UniRef50_P44442 Ribonuclease D n=25 Tax=Pasteurellaceae RepID=RN... 304 4e-81 UniRef50_Q3ICG4 Putative RNase D, processing tRNAs n=3 Tax=Alter... 300 6e-80 UniRef50_Q47YC8 Ribonuclease D n=1 Tax=Colwellia psychrerythraea... 295 2e-78 UniRef50_UPI0000E0E878 ribonuclease D n=1 Tax=Glaciecola sp. HTC... 288 3e-76 UniRef50_A6FH72 RNase D, processes tRNA n=1 Tax=Moritella sp. PE... 286 6e-76 UniRef50_B4RU88 Ribonuclease D n=2 Tax=Alteromonas macleodii Rep... 282 2e-74 UniRef50_A0KXU5 Ribonuclease D n=21 Tax=Shewanella RepID=A0KXU5_... 280 5e-74 UniRef50_Q5QWP5 Ribonuclease D n=2 Tax=Idiomarina RepID=Q5QWP5_I... 268 2e-70 UniRef50_A1SVE6 Ribonuclease D n=3 Tax=Psychromonas RepID=A1SVE6... 257 5e-67 UniRef50_A4VJA7 Ribonuclease D n=25 Tax=Bacteria RepID=A4VJA7_PSEU5 232 2e-59 UniRef50_Q21L29 Ribonuclease D n=1 Tax=Saccharophagus degradans ... 223 7e-57 UniRef50_A0YC02 Ribonuclease D n=1 Tax=marine gamma proteobacter... 220 8e-56 UniRef50_B3PKH0 Ribonuclease D n=1 Tax=Cellvibrio japonicus Ueda... 219 1e-55 UniRef50_C4LF08 Ribonuclease D n=1 Tax=Tolumonas auensis DSM 918... 216 9e-55 UniRef50_C5BMI8 Ribonuclease D n=1 Tax=Teredinibacter turnerae T... 214 4e-54 UniRef50_A6VYC1 Ribonuclease D n=2 Tax=Marinomonas RepID=A6VYC1_... 210 6e-53 UniRef50_C7RC18 Ribonuclease D n=1 Tax=Kangiella koreensis DSM 1... 209 1e-52 UniRef50_A4GIY0 Putative ribonuclease D n=1 Tax=uncultured marin... 209 1e-52 UniRef50_B8GL88 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. HL-E... 204 4e-51 UniRef50_A4A872 Ribonuclease D n=1 Tax=Congregibacter litoralis ... 202 2e-50 UniRef50_B8KGY1 Ribonuclease D n=1 Tax=gamma proteobacterium NOR... 202 2e-50 UniRef50_A4BJR0 Ribonuclease D n=1 Tax=Reinekea blandensis MED29... 201 3e-50 UniRef50_B5JVS3 Ribonuclease D n=1 Tax=gamma proteobacterium HTC... 200 7e-50 UniRef50_B7RU98 Ribonuclease D n=1 Tax=marine gamma proteobacter... 199 1e-49 UniRef50_Q605A6 Ribonuclease D n=1 Tax=Methylococcus capsulatus ... 199 1e-49 UniRef50_Q2BKH7 Ribonuclease D n=1 Tax=Neptuniibacter caesariens... 192 1e-47 UniRef50_C0N8D2 Ribonuclease D n=1 Tax=Methylophaga thiooxidans ... 188 4e-46 UniRef50_A4E7K3 Putative uncharacterized protein n=3 Tax=Collins... 186 9e-46 UniRef50_Q2SIW8 Ribonuclease D n=1 Tax=Hahella chejuensis KCTC 2... 186 1e-45 UniRef50_Q0VNN2 Ribonuclease D n=1 Tax=Alcanivorax borkumensis S... 184 3e-45 UniRef50_Q1QXJ4 Ribonuclease D n=1 Tax=Chromohalobacter salexige... 182 1e-44 UniRef50_B9CJZ2 Ribonuclease D n=2 Tax=Atopobium RepID=B9CJZ2_9ACTN 181 4e-44 UniRef50_B4X4T0 Ribonuclease D n=1 Tax=Alcanivorax sp. DG881 Rep... 179 1e-43 UniRef50_Q0F2Y2 Ribonuclease D n=1 Tax=Mariprofundus ferrooxydan... 179 1e-43 UniRef50_Q2RSM2 Ribonuclease D n=10 Tax=Alphaproteobacteria RepI... 178 3e-43 UniRef50_B9ZRL3 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. K90m... 176 2e-42 UniRef50_C8WAD1 Ribonuclease D n=1 Tax=Atopobium parvulum DSM 20... 173 1e-41 UniRef50_Q1YTB3 Ribonuclease D n=1 Tax=gamma proteobacterium HTC... 172 2e-41 UniRef50_Q1N1A2 Ribonuclease D n=1 Tax=Bermanella marisrubri Rep... 171 4e-41 UniRef50_D0WEC8 Ribonuclease D n=1 Tax=Slackia exigua ATCC 70012... 169 1e-40 UniRef50_A0Z9G7 Ribonuclease D n=2 Tax=unclassified Gammaproteob... 167 9e-40 UniRef50_A7HYE5 Ribonuclease D n=116 Tax=Alphaproteobacteria Rep... 166 1e-39 UniRef50_Q0BVP4 Ribonuclease D n=18 Tax=Alphaproteobacteria RepI... 165 2e-39 UniRef50_UPI0001C31C49 Ribonuclease D n=1 Tax=Conexibacter woese... 161 3e-38 UniRef50_Q6AJF4 Related to ribonuclease D n=1 Tax=Desulfotalea p... 159 1e-37 UniRef50_D2LDG9 Ribonuclease D n=1 Tax=Rhodomicrobium vannielii ... 157 6e-37 UniRef50_A1U125 3'-5' exonuclease n=3 Tax=Marinobacter RepID=A1U... 157 8e-37 UniRef50_C1ZCS8 Ribonuclease D n=1 Tax=Planctomyces limnophilus ... 155 2e-36 UniRef50_D2QXT8 3'-5' exonuclease n=1 Tax=Pirellula staleyi DSM ... 155 3e-36 UniRef50_Q2G8P2 Ribonuclease D n=10 Tax=Sphingomonadales RepID=Q... 153 1e-35 UniRef50_D0CQ07 Ribonuclease D n=1 Tax=Silicibacter lacuscaerule... 152 1e-35 UniRef50_C7MN49 Ribonuclease D n=3 Tax=Coriobacteriaceae RepID=C... 151 4e-35 UniRef50_Q7URG3 Ribonuclease D n=1 Tax=Rhodopirellula baltica Re... 150 9e-35 UniRef50_Q31F99 Ribonuclease D n=1 Tax=Thiomicrospira crunogena ... 150 9e-35 UniRef50_B0U173 Ribonuclease D n=18 Tax=Francisella RepID=B0U173... 150 9e-35 UniRef50_A6DHN3 Putative uncharacterized protein n=1 Tax=Lentisp... 147 5e-34 UniRef50_B3Q9Q3 Ribonuclease D n=5 Tax=Bradyrhizobiaceae RepID=B... 147 5e-34 UniRef50_A3ZQI0 Ribonuclease D n=1 Tax=Blastopirellula marina DS... 145 3e-33 UniRef50_D0KY39 Ribonuclease D n=1 Tax=Halothiobacillus neapolit... 144 4e-33 UniRef50_A1B391 Ribonuclease D n=14 Tax=Alphaproteobacteria RepI... 141 4e-32 UniRef50_C6XKM8 Ribonuclease D n=1 Tax=Hirschia baltica ATCC 498... 140 7e-32 UniRef50_A6C450 Ribonuclease D n=1 Tax=Planctomyces maris DSM 87... 139 2e-31 UniRef50_C7M0M9 3'-5' exonuclease n=1 Tax=Acidimicrobium ferroox... 138 3e-31 UniRef50_Q5GT27 Ribonuclease D n=10 Tax=Wolbachia RepID=Q5GT27_W... 137 6e-31 UniRef50_C8PX51 3'-5' exonuclease n=1 Tax=Enhydrobacter aerosacc... 136 1e-30 UniRef50_B3E3R4 3'-5' exonuclease n=1 Tax=Geobacter lovleyi SZ R... 134 5e-30 UniRef50_A8GWM0 Ribonuclease D n=16 Tax=Proteobacteria RepID=A8G... 132 2e-29 UniRef50_A5WG76 3'-5' exonuclease n=3 Tax=Psychrobacter RepID=A5... 131 4e-29 UniRef50_A1UT53 Ribonuclease D n=5 Tax=Bartonella RepID=A1UT53_B... 131 4e-29 UniRef50_Q3BSC1 Ribonuclease D n=20 Tax=Xanthomonadaceae RepID=Q... 125 2e-27 UniRef50_UPI00016C3C86 ribonuclease D n=1 Tax=Gemmata obscuriglo... 124 8e-27 UniRef50_Q6FA19 Ribonuclease D, processes tRNA n=19 Tax=Acinetob... 123 1e-26 UniRef50_A9A075 3'-5' exonuclease n=1 Tax=Desulfococcus oleovora... 122 2e-26 UniRef50_A5G9G2 3'-5' exonuclease n=8 Tax=Desulfuromonadales Rep... 121 4e-26 UniRef50_C0QAP2 Rnd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 121 4e-26 UniRef50_Q3A7R1 RNase D n=2 Tax=Desulfuromonadales RepID=Q3A7R1_... 119 2e-25 UniRef50_C8NCR6 Ribonuclease D n=1 Tax=Cardiobacterium hominis A... 119 2e-25 UniRef50_C1AC33 Putative ribonuclease n=1 Tax=Gemmatimonas auran... 116 1e-24 UniRef50_Q0BZZ0 Ribonuclease D n=1 Tax=Hyphomonas neptunium ATCC... 114 5e-24 UniRef50_D0LT15 Ribonuclease D n=1 Tax=Haliangium ochraceum DSM ... 114 6e-24 UniRef50_C9RLF5 3'-5' exonuclease n=1 Tax=Fibrobacter succinogen... 113 1e-23 UniRef50_Q6SGG6 Ribonuclease D, putative n=4 Tax=Bacteria RepID=... 105 3e-21 UniRef50_A5EXN2 Ribonuclease D n=2 Tax=Dichelobacter nodosus Rep... 104 7e-21 UniRef50_Q5PBN9 Ribonuclease D n=5 Tax=Anaplasma RepID=Q5PBN9_ANAMM 102 2e-20 UniRef50_B8FEX5 3'-5' exonuclease n=1 Tax=Desulfatibacillum alke... 101 6e-20 UniRef50_B2UPD3 3'-5' exonuclease n=1 Tax=Akkermansia muciniphil... 100 8e-20 UniRef50_A7HCG7 3'-5' exonuclease n=4 Tax=Anaeromyxobacter RepID... 98 5e-19 UniRef50_UPI0001746047 ribonuclease D, putative n=1 Tax=Verrucom... 97 9e-19 UniRef50_B4D6R3 3'-5' exonuclease n=1 Tax=Chthoniobacter flavus ... 94 5e-18 UniRef50_D0RPF8 Putative ribonuclease D n=1 Tax=alpha proteobact... 94 1e-17 UniRef50_C4XX47 Putative uncharacterized protein n=1 Tax=Clavisp... 92 4e-17 UniRef50_B0S9S6 Ribonuclease III n=6 Tax=Leptospira RepID=B0S9S6... 90 1e-16 UniRef50_A0LFB2 3'-5' exonuclease n=1 Tax=Syntrophobacter fumaro... 89 4e-16 UniRef50_Q6A8V2 Ribonuclease D n=2 Tax=Propionibacterium acnes R... 85 4e-15 UniRef50_D2SEB8 3'-5' exonuclease n=1 Tax=Geodermatophilus obscu... 85 4e-15 UniRef50_Q2LWK2 Ribonuclease D n=1 Tax=Syntrophus aciditrophicus... 85 5e-15 UniRef50_Q23S17 3'-5' exonuclease family protein n=1 Tax=Tetrahy... 84 8e-15 UniRef50_C7NI77 Ribonuclease D n=1 Tax=Kytococcus sedentarius DS... 84 9e-15 UniRef50_B9XPC9 3'-5' exonuclease n=1 Tax=bacterium Ellin514 Rep... 84 1e-14 UniRef50_B1ZWM0 3'-5' exonuclease n=2 Tax=Opitutaceae RepID=B1ZW... 81 5e-14 UniRef50_C4QXG4 Exonuclease component of the nuclear exosome n=1... 81 5e-14 UniRef50_C4Q1K8 Polymyositis/scleroderma autoantigen-related n=1... 81 6e-14 UniRef50_A9V721 Predicted protein n=1 Tax=Monosiga brevicollis R... 80 1e-13 UniRef50_D2RBB4 3'-5' exonuclease n=1 Tax=Gardnerella vaginalis ... 80 2e-13 UniRef50_UPI0000D56CFF PREDICTED: similar to Rrp6 CG7292-PB n=1 ... 79 2e-13 UniRef50_C7R4I8 3'-5' exonuclease n=1 Tax=Jonesia denitrificans ... 79 2e-13 UniRef50_Q12149 Exosome complex exonuclease RRP6 n=9 Tax=Sacchar... 79 3e-13 UniRef50_D1ZW95 Whole genome shotgun sequence assembly, contig_9... 79 3e-13 UniRef50_C0W3T7 Possible ribonuclease D n=1 Tax=Actinomyces urog... 79 3e-13 UniRef50_Q6C721 YALI0E04444p n=1 Tax=Yarrowia lipolytica RepID=Q... 78 4e-13 UniRef50_UPI0001B4D324 ribonuclease D n=1 Tax=Streptomyces virid... 78 4e-13 UniRef50_B3RZJ7 Putative uncharacterized protein (Fragment) n=1 ... 77 9e-13 UniRef50_A4ALP3 Ribonuclease n=4 Tax=Actinobacteria (class) RepI... 77 1e-12 UniRef50_A8L0K3 3'-5' exonuclease n=84 Tax=Actinomycetales RepID... 76 2e-12 UniRef50_B5JQC7 3'-5' exonuclease domain protein n=1 Tax=Verruco... 76 2e-12 UniRef50_UPI0000E469F8 PREDICTED: similar to exosome component 1... 76 2e-12 UniRef50_C5DEP9 KLTH0C11066p n=1 Tax=Lachancea thermotolerans CB... 76 2e-12 UniRef50_C0XSM9 Ribonuclease n=1 Tax=Corynebacterium lipophilofl... 76 2e-12 UniRef50_C2KQ41 Ribonuclease D n=2 Tax=Mobiluncus RepID=C2KQ41_9... 76 3e-12 UniRef50_D0YSP9 Ribonuclease D n=1 Tax=Mobiluncus mulieris 28-1 ... 75 3e-12 UniRef50_D0WQH3 Putative ribonuclease D n=1 Tax=Actinomyces sp. ... 75 3e-12 UniRef50_B3DSL7 Ribonuclease D n=17 Tax=Bifidobacterium RepID=B3... 75 4e-12 UniRef50_Q31QF9 3'-5' exonuclease n=3 Tax=Synechococcus RepID=Q3... 75 5e-12 UniRef50_C3ZLP6 Putative uncharacterized protein n=1 Tax=Branchi... 74 6e-12 UniRef50_C5VCE9 Ribonuclease D n=2 Tax=Corynebacterium matruchot... 74 7e-12 UniRef50_UPI0001926123 PREDICTED: similar to predicted protein n... 74 7e-12 UniRef50_Q6NGV4 Putative ribonuclease n=1 Tax=Corynebacterium di... 74 7e-12 UniRef50_Q17951 Protein C14A4.4a, confirmed by transcript eviden... 74 1e-11 UniRef50_D2NTT8 Ribonuclease D n=2 Tax=Rothia mucilaginosa RepID... 74 1e-11 UniRef50_Q16D56 3'-5' exonuclease family protein, putative n=10 ... 73 2e-11 UniRef50_A9WRA0 Ribonuclease D n=5 Tax=Actinomycetales RepID=A9W... 73 2e-11 UniRef50_A9LLI8 RRP6-like protein 3 n=5 Tax=rosids RepID=A9LLI8_... 72 3e-11 UniRef50_UPI000185C37F ribonuclease D n=1 Tax=Corynebacterium am... 72 3e-11 UniRef50_Q75CB2 ACL001Cp n=2 Tax=Saccharomycetaceae RepID=Q75CB2... 72 3e-11 UniRef50_A0DUC4 Chromosome undetermined scaffold_64, whole genom... 72 3e-11 UniRef50_C5FLQ1 Ribosomal RNA processing 3'-5' exonuclease n=1 T... 72 3e-11 UniRef50_A7AVN6 Exosome component 10, putative n=1 Tax=Babesia b... 72 3e-11 UniRef50_Q09BY7 3'-5' exonuclease, putative n=2 Tax=Cystobacteri... 72 4e-11 UniRef50_Q241P8 3'-5' exonuclease family protein n=2 Tax=Eukaryo... 69 2e-10 UniRef50_Q7QBT6 AGAP002300-PA n=3 Tax=Culicidae RepID=Q7QBT6_ANOGA 69 2e-10 UniRef50_Q55641 Ribonuclease D n=50 Tax=Cyanobacteria RepID=Q556... 69 2e-10 UniRef50_D0LTA5 3'-5' exonuclease n=2 Tax=Haliangium ochraceum D... 69 3e-10 UniRef50_C2CWJ0 Ribonuclease III n=3 Tax=Bifidobacteriaceae RepI... 69 3e-10 UniRef50_Q01780 Exosome component 10 n=55 Tax=Eumetazoa RepID=EX... 68 4e-10 UniRef50_C7MCA5 Ribonuclease D n=1 Tax=Brachybacterium faecium D... 68 4e-10 UniRef50_A6G563 Ribonuclease D, putative n=1 Tax=Plesiocystis pa... 68 5e-10 UniRef50_B6DTH8 Exosome subunit Rrp6P n=1 Tax=Bodo saltans RepID... 68 5e-10 UniRef50_D1I5Y8 Whole genome shotgun sequence of line PN40024, s... 68 7e-10 UniRef50_A9V5N1 Predicted protein n=1 Tax=Monosiga brevicollis R... 67 1e-09 UniRef50_C9SGG4 3'-5' exonuclease domain-containing protein n=1 ... 67 1e-09 UniRef50_UPI0001C360F5 hypothetical protein ChatD1_13164 n=1 Tax... 67 1e-09 UniRef50_UPI000180BF09 PREDICTED: similar to exosome component 1... 67 1e-09 UniRef50_Q10146 Exosome complex exonuclease rrp6 n=1 Tax=Schizos... 66 2e-09 UniRef50_A3GG05 Ribosomal RNA processing 3'-5' exonuclease n=8 T... 66 2e-09 UniRef50_B2VXT5 Exosome complex exonuclease Rrp n=2 Tax=Pleospor... 66 2e-09 UniRef50_Q55AW0 3'-5' exonuclease n=1 Tax=Dictyostelium discoide... 66 2e-09 UniRef50_Q8T0Z8 PM-Scl autoantigen-like protein n=1 Tax=Bombyx m... 65 3e-09 UniRef50_A9LLI7 RRP6-like protein 2 n=6 Tax=rosids RepID=A9LLI7_... 65 4e-09 UniRef50_B8C5L5 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 65 4e-09 UniRef50_A5DAB2 Putative uncharacterized protein n=2 Tax=Pichia ... 65 4e-09 UniRef50_UPI000180BC5E PREDICTED: similar to exosome component 1... 65 4e-09 UniRef50_Q3YR08 3'-5' exonuclease n=4 Tax=Bacteria RepID=Q3YR08_... 65 6e-09 UniRef50_A6R753 Predicted protein n=4 Tax=cellular organisms Rep... 64 7e-09 UniRef50_A2R7H4 Contig An16c0130, complete genome n=16 Tax=Eurot... 64 8e-09 UniRef50_C5X9Z8 Putative uncharacterized protein Sb02g034580 n=1... 64 9e-09 UniRef50_O67779 DNA polymerase I n=4 Tax=Aquificaceae RepID=DPO1... 64 1e-08 UniRef50_B6K2U5 Exosome complex exonuclease RRP6 n=1 Tax=Schizos... 64 1e-08 UniRef50_B0EQ49 Exosome complex exonuclease RRP6, putative n=2 T... 64 1e-08 UniRef50_A9RMT7 Predicted protein (Fragment) n=1 Tax=Physcomitre... 63 2e-08 UniRef50_Q7S5A8 Related to nucleolar 100K polymyositis-scleroder... 63 2e-08 UniRef50_B3DN45 LD13130p (Fragment) n=14 Tax=Drosophila RepID=B3... 62 2e-08 UniRef50_A0EBI7 Chromosome undetermined scaffold_88, whole genom... 62 2e-08 UniRef50_UPI0001BC2C11 putative ribonuclease D n=1 Tax=Brevibact... 62 3e-08 UniRef50_B0DUK1 Predicted protein n=1 Tax=Laccaria bicolor S238N... 62 4e-08 UniRef50_C1E3A4 Predicted protein (Fragment) n=2 Tax=Mamiellales... 62 4e-08 UniRef50_A5DWN7 Putative uncharacterized protein n=1 Tax=Loddero... 62 5e-08 UniRef50_A6SCE7 Putative uncharacterized protein n=2 Tax=Sclerot... 61 6e-08 UniRef50_A4S626 Predicted protein (Fragment) n=3 Tax=Eukaryota R... 61 7e-08 UniRef50_A7BCR3 Putative uncharacterized protein n=1 Tax=Actinom... 61 7e-08 UniRef50_Q1ARA6 DNA polymerase I n=1 Tax=Rubrobacter xylanophilu... 61 7e-08 UniRef50_Q5CS61 RRPp/PMC2 like exosome 3'-5' exoribonuclease sub... 61 8e-08 UniRef50_B3E046 Ribonuclease D n=1 Tax=Methylacidiphilum inferno... 61 8e-08 UniRef50_Q4UC54 3'-5' exonuclease, putative n=2 Tax=Theileria Re... 60 2e-07 UniRef50_Q0BUA3 Ribonuclease D n=208 Tax=Bacteria RepID=Q0BUA3_G... 59 2e-07 UniRef50_A0L4G0 3'-5' exonuclease n=1 Tax=Magnetococcus sp. MC-1... 59 2e-07 UniRef50_B9I623 Predicted protein n=2 Tax=Malpighiales RepID=B9I... 59 3e-07 UniRef50_A4RDR3 Putative uncharacterized protein n=1 Tax=Magnapo... 59 4e-07 UniRef50_A4IA84 Exosome subunit rrp6p homologue, putative n=3 Ta... 59 4e-07 UniRef50_C5KIT4 Ribonuclease D, putative n=1 Tax=Perkinsus marin... 58 7e-07 UniRef50_D1ICW5 Whole genome shotgun sequence of line PN40024, s... 57 8e-07 UniRef50_UPI000023ED22 hypothetical protein FG06049.1 n=1 Tax=Gi... 57 8e-07 UniRef50_Q7XE52 Nucleolar protein, putative, expressed n=13 Tax=... 57 1e-06 UniRef50_B2AKX1 Predicted CDS Pa_5_9190 n=1 Tax=Podospora anseri... 57 1e-06 UniRef50_C8NU72 Ribonuclease D n=1 Tax=Corynebacterium genitaliu... 57 1e-06 UniRef50_A4RUV5 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 57 2e-06 UniRef50_D2VPJ2 3'-5' exonuclease and HRDC domain-containing pro... 56 2e-06 UniRef50_B8PGQ0 Predicted protein n=2 Tax=Postia placenta Mad-69... 56 2e-06 UniRef50_A9EXG4 Rnd protein n=1 Tax=Sorangium cellulosum 'So ce ... 56 2e-06 UniRef50_C8NPA1 Ribonuclease D n=9 Tax=Corynebacterium RepID=C8N... 55 3e-06 UniRef50_D0MWN1 Exosome complex exonuclease RRP6-like protein n=... 55 3e-06 UniRef50_Q4JVB6 Rnd protein n=2 Tax=Corynebacterium jeikeium Rep... 55 4e-06 UniRef50_Q16LC6 3-5 exonuclease n=3 Tax=Culicidae RepID=Q16LC6_A... 55 4e-06 UniRef50_A8NTL1 3'-5' exonuclease family protein n=1 Tax=Brugia ... 55 4e-06 UniRef50_Q4DSE3 Ribosomal RNA processing protein 6, putative n=4... 55 4e-06 UniRef50_C0W1R4 Ribonuclease D n=1 Tax=Actinomyces coleocanis DS... 55 4e-06 UniRef50_A9U244 Predicted protein (Fragment) n=1 Tax=Physcomitre... 54 7e-06 UniRef50_Q4UGW4 DNA polymerase i, putative n=2 Tax=Theileria Rep... 54 1e-05 UniRef50_UPI0001793421 PREDICTED: hypothetical protein n=1 Tax=A... 54 1e-05 UniRef50_Q04QR5 Ribonuclease D-related n=6 Tax=Leptospira RepID=... 53 1e-05 UniRef50_Q83GB8 Ribonuclease D n=2 Tax=Tropheryma whipplei RepID... 53 2e-05 UniRef50_B1X218 DNA polymerase I n=3 Tax=Cyanothece RepID=B1X218... 53 2e-05 UniRef50_A7APW4 3'-5' exonuclease domain containing protein n=1 ... 52 3e-05 UniRef50_Q97HU8 Ribonuclease D n=1 Tax=Clostridium acetobutylicu... 52 3e-05 UniRef50_D0RRD6 3'-5' exonuclease family protein n=2 Tax=alpha p... 52 3e-05 UniRef50_A0CQJ2 Chromosome undetermined scaffold_24, whole genom... 52 3e-05 UniRef50_Q241P7 3'-5' exonuclease family protein n=1 Tax=Tetrahy... 52 3e-05 UniRef50_B7PZE0 Exosome component, putative n=1 Tax=Ixodes scapu... 52 4e-05 UniRef50_UPI000186D892 conserved hypothetical protein n=1 Tax=Pe... 52 4e-05 UniRef50_C4LIZ8 Ribonuclease D n=1 Tax=Corynebacterium kroppenst... 52 4e-05 UniRef50_B6KGV1 Exosome component 10, putative n=3 Tax=Toxoplasm... 52 4e-05 UniRef50_UPI0001758213 PREDICTED: similar to Rrp6 CG7292-PB n=1 ... 51 6e-05 UniRef50_Q7NEY0 Glr3747 protein n=1 Tax=Gloeobacter violaceus Re... 51 8e-05 UniRef50_Q5KK81 PM-scl autoantigen, putative n=3 Tax=Eukaryota R... 50 1e-04 UniRef50_B6AIJ4 Exosome component 10, putative n=1 Tax=Cryptospo... 50 1e-04 UniRef50_C0VVQ6 Ribonuclease D n=2 Tax=Corynebacterium glucurono... 50 2e-04 UniRef50_Q8N9H8 Probable exonuclease mut-7 homolog n=15 Tax=Euth... 49 3e-04 UniRef50_A9LGS2 Ribonuclease D (Fragment) n=1 Tax=uncultured pla... 48 5e-04 UniRef50_A2EMW6 HRDC domain containing protein n=1 Tax=Trichomon... 48 5e-04 UniRef50_B7G899 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 48 5e-04 UniRef50_Q4FNB9 Ribonuclease D n=3 Tax=Candidatus Pelagibacter R... 48 6e-04 UniRef50_A7AQX3 DNA polymerase I, putative n=1 Tax=Babesia bovis... 48 6e-04 UniRef50_B2V8G6 DNA polymerase I n=9 Tax=Aquificales RepID=B2V8G... 48 7e-04 UniRef50_Q69RB5 Polymyositis/scleroderma autoantigen 2-like n=3 ... 48 7e-04 UniRef50_A0L614 3'-5' exonuclease n=1 Tax=Magnetococcus sp. MC-1... 47 0.001 UniRef50_B8MZK1 Exosome complex exonuclease Rrp6, putative n=2 T... 47 0.001 UniRef50_UPI0000ECA4C2 CDNA FLJ37119 fis, clone BRACE2022333. n=... 47 0.001 UniRef50_A2DWN1 Zinc finger, C2H2 type family protein n=1 Tax=Tr... 47 0.001 UniRef50_Q179T2 Probable exonuclease mut-7 homolog n=2 Tax=Culic... 47 0.001 UniRef50_C1EIE7 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 46 0.002 UniRef50_C1MH52 Predicted protein n=1 Tax=Micromonas pusilla CCM... 46 0.002 >UniRef50_P09155 Ribonuclease D n=146 Tax=Gammaproteobacteria RepID=RND_ECOLI Length = 375 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/375 (100%), Positives = 375/375 (100%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI Sbjct: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS Sbjct: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL Sbjct: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR Sbjct: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM Sbjct: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE Sbjct: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 Query: 361 LMAEALHNLLQEYPQ 375 LMAEALHNLLQEYPQ Sbjct: 361 LMAEALHNLLQEYPQ 375 >UniRef50_C9XUE4 Ribonuclease D n=1 Tax=Cronobacter turicensis RepID=C9XUE4_CROTZ Length = 409 Score = 599 bits (1545), Expect = e-170, Method: Compositional matrix adjust. Identities = 283/373 (75%), Positives = 326/373 (87%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQMITT+DALA+LCE R A+ALDTEFVRTRTYYPQLGLIQL+DGE++ALIDPL I Sbjct: 37 LNYQMITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI 96 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T+W+P +A+L+D +ITKFLHAGSEDLEVF N FG +P P IDTQ+LA+F G P+S GFA+ Sbjct: 97 TEWAPFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFAT 156 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++GV LDKSESRTDWLARPLTERQC+YAAADVWYLLPI KLM + +GWL AA+ Sbjct: 157 LVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAI 216 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +ECRLM RR EV+ P++AWR+ITNAWQLR RQLACL+LLA WRLRKARERD+AVNFVVR Sbjct: 217 NECRLMTQRRGEVLDPDEAWREITNAWQLRPRQLACLKLLAGWRLRKARERDMAVNFVVR 276 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EE+LW VAR+MPGSLGELD LGLSGSEIRFHGKTLLALV +AQ L EDALP+P+ NL+DM Sbjct: 277 EENLWKVARHMPGSLGELDGLGLSGSEIRFHGKTLLALVAQAQALLEDALPEPLANLVDM 336 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGYRK FK IK+L+ + SE HKISAEL+ASRRQINQLLNWHWKLKPQN LPELISGWRGE Sbjct: 337 PGYRKVFKEIKALVQETSEAHKISAELMASRRQINQLLNWHWKLKPQNQLPELISGWRGE 396 Query: 361 LMAEALHNLLQEY 373 L+ EAL LLQ Y Sbjct: 397 LLGEALKTLLQNY 409 >UniRef50_C6C608 Ribonuclease D n=19 Tax=Gammaproteobacteria RepID=C6C608_DICDC Length = 403 Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust. Identities = 248/373 (66%), Positives = 302/373 (80%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+ITTDD L+ +C R P +ALDTEFVRTRTYYPQLGLIQLFDGE L+LIDPL I Sbjct: 30 LNYQLITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSI 89 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T W P +L DP++TK+LHAGSEDLEVFLN FG LP P +DTQIL AF G+P+S+GFA+ Sbjct: 90 TVWQPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLSYGFAA 149 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V +Y VTLDKSESRTDWLARPL+E+QC+YAAADV+YLLP+ +L+ ET ++GW AAL Sbjct: 150 LVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAAL 209 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DECR + R+Q+V+APE A+R+I NAWQL+ R LACLQ LADWRLRKARERD AVNF+VR Sbjct: 210 DECRQLCQRKQDVLAPEQAYREIGNAWQLKGRHLACLQKLADWRLRKARERDSAVNFIVR 269 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EEHL VARY+PGSLGEL +LGLSG EIR+HGKTLL LV + QT+ P+P++NL+D Sbjct: 270 EEHLGQVARYLPGSLGELGALGLSGPEIRYHGKTLLELVAETQTMDAAEYPEPVINLIDY 329 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGY+KAF+ IK L+ +E +SAELLASRRQIN+LL+WHWKL PQ ++PEL+SGWRG Sbjct: 330 PGYKKAFREIKDLVQQQAERSGLSAELLASRRQINRLLSWHWKLAPQTHVPELLSGWRGR 389 Query: 361 LMAEALHNLLQEY 373 L E L +L Y Sbjct: 390 LFGEPLKGILANY 402 >UniRef50_C4K3X6 RNase D, processes tRNA n=9 Tax=Enterobacteriaceae RepID=C4K3X6_HAMD5 Length = 387 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/375 (50%), Positives = 264/375 (70%), Gaps = 3/375 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NY++ITT++ L +CE A+ALDTEFVRT+TYY +LGLIQL+DG ++LIDP I Sbjct: 12 LNYRLITTNEDLHHICELAVLRKAVALDTEFVRTKTYYAELGLIQLYDGHRVSLIDPFLI 71 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T+W+P +L++ I KFLH+ ED+E+F + F LP+PLID+QILAAF GRP+S GF+ Sbjct: 72 TEWAPFYCLLKNKKIVKFLHSAGEDIEIFFHFFKTLPEPLIDSQILAAFTGRPVSCGFSI 131 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+E+ G+ L+K+ESRTDWLARPL+++QC+YAA DV+YLLP+ LM + E SGW+ A Sbjct: 132 LVKEFQGIVLNKAESRTDWLARPLSQKQCDYAAEDVFYLLPLANALMKKIETSGWMEAVK 191 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC L+ RR ++ PE A+RDI NA QL QL CL+ LA WRL AR++++A+NFV++ Sbjct: 192 EECELLCQRRSQIQDPEMAYRDIGNASQLNPGQLICLKKLASWRLVYARKKNVAINFVIQ 251 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E +LW VARY P SL EL LGL IR HG TLL LV ++Q ED P ++ ++ Sbjct: 252 ESYLWKVARYQPTSLSELFHLGLDRRTIRQHGLTLLGLVTESQKTKED--PSLVIAYLNH 309 Query: 301 -PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P Y+K FK IK LI + +S EL+ SR+ INQLLNWH+ L P+ P L++GWR Sbjct: 310 EPVYKKIFKEIKDLIQSIGALIGLSHELIGSRKHINQLLNWHFGLIPKEKRPLLLTGWRA 369 Query: 360 ELMAEALHNLLQEYP 374 ++++ L +L +P Sbjct: 370 QVLSLELTKILDRHP 384 >UniRef50_B7VI13 Ribonuclease D n=22 Tax=Gammaproteobacteria RepID=B7VI13_VIBSL Length = 397 Score = 359 bits (921), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 174/372 (46%), Positives = 251/372 (67%), Gaps = 1/372 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++YQ+IT L +C+ R + LDTEFVRTRTYYPQLGLIQLFDGE L+LIDP+ + Sbjct: 26 VDYQIITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIAL 85 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + +P +L+D S+ K LHA EDLEVF N FG P P++DTQI+AAF G +S GFA+ Sbjct: 86 DEMTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA 145 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V E+ GV LDKSESRTDWLARPL+++Q +YAAADV YL+P+ KL+ + +GW AA Sbjct: 146 LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQ 205 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L +R P++A+ DI AWQL+ +QLA L+ LA WRL++A +RDLA+NFV + Sbjct: 206 QESDLQVAKRIRKANPDNAYLDIKGAWQLKPQQLAILRPLATWRLKEAIKRDLALNFVFK 265 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E+ LW+VAR+ ++ G +R HG + ++V+ A+ PE+ P P+ LMD Sbjct: 266 EQDLWAVARFAMKDPKHMEQEGFDYRSVRRHGAKISSIVKLAEHTPEEEYPAPVERLMDY 325 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL-KPQNNLPELISGWRG 359 PGY++ FK +K + S+ ++ E LAS++Q+NQ+L+W WK + LP+++ GWR Sbjct: 326 PGYKQLFKVLKDEVKTASQHSGLATEFLASKKQLNQVLSWIWKHDRNPEKLPDVMQGWRL 385 Query: 360 ELMAEALHNLLQ 371 +++ E L+ ++ Sbjct: 386 DVVGEKLNKAIK 397 >UniRef50_D0M5H9 Ribonuclease D n=15 Tax=Gammaproteobacteria RepID=D0M5H9_VIBSE Length = 388 Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 176/373 (47%), Positives = 249/373 (66%), Gaps = 3/373 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+IT + L +C R + LDTEFVR RT+YPQLGLIQLFDG L+LIDP + Sbjct: 17 VNYQIITKNKDLEEVCIHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDPTEL 76 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD +P A+L+D S+ K LHA EDLEVF N FG P P++DTQ++AAF G +S GFAS Sbjct: 77 TDMTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAS 136 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VEEY GV LDKSESRTDW+ARPLT++Q +YAAADV YLLP+ KL+ + +GW A Sbjct: 137 LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAVQ 196 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L+ +R V E+A+ DI AWQL+ +LA L+ LA WR R+A +RDLA+NF+ + Sbjct: 197 QESDLLVSKRIRVTNEENAYLDIKGAWQLKPSELAILKPLAMWRYREAIKRDLALNFIFK 256 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E L +VAR + ++++ + I HG + A+V++A+ P + P + LMD Sbjct: 257 EGDLLTVARLGLTNFKKMEAEDIDIRAINRHGAKIAAIVKQAKQTPSEEYPAKIERLMDY 316 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWK--LKPQNNLPELISGWR 358 PGY++ FK +K ++ S+ ++ E LAS++QINQL++W WK P+ LP+L+ GWR Sbjct: 317 PGYKQVFKNMKDIVKSASQKSGLATEFLASKKQINQLISWVWKKDCDPE-VLPDLMQGWR 375 Query: 359 GELMAEALHNLLQ 371 +L+ + ++ L+ Sbjct: 376 LDLLGDKMNKALK 388 >UniRef50_A5F6R9 Ribonuclease D n=31 Tax=Vibrio RepID=A5F6R9_VIBC3 Length = 381 Score = 347 bits (889), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 176/371 (47%), Positives = 249/371 (67%), Gaps = 1/371 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+I+ L +C A R + LDTEFVRTRT++PQLGLIQ+FDGE+L+LIDP + Sbjct: 9 VNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL 68 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + +P +L+D S+ K LHA EDLEVF N FG P P++DTQI+AAF G +S GFA+ Sbjct: 69 DEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V++ V LDKSESRTDWLARPL+++Q EYAAADV+YLLP+ KL+ + +GW AAL Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAAL 188 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L +R +V PE A+ DI AWQL+ ++LA L+ LA WR +A RDLA+NFV++ Sbjct: 189 QESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIK 248 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E L +++R S ++ G+ IR H ++A+V+ A P DA P ++ +M+ Sbjct: 249 ETDLLTISRLALRSPKRMEEEGVDPHAIRRHSSKIIAMVKTALETPADAYPPEIVPIMEY 308 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL-KPQNNLPELISGWRG 359 PGY++ FK +K + VS T ++ E LAS++Q+NQLL+W WK + LP+L+ GWR Sbjct: 309 PGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRL 368 Query: 360 ELMAEALHNLL 370 L+ E L+ L+ Sbjct: 369 PLLGEKLNTLV 379 >UniRef50_B8F419 Ribonuclease D n=8 Tax=Pasteurellaceae RepID=B8F419_HAEPS Length = 375 Score = 333 bits (855), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 170/362 (46%), Positives = 239/362 (66%), Gaps = 4/362 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + YQ + + +LA +C V IALDTEFVRTRTYYP+LGLIQLFDG+ + LIDPL I Sbjct: 5 IEYQWVDDNPSLAQMCLQVAEQSVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSI 64 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD+SP A+L + ++ K LHA EDLEVF + F +LPQP++DTQ++A F G +S GFA Sbjct: 65 TDFSPFTALLANENVLKVLHACGEDLEVFQHYFKQLPQPMLDTQVMAGFVGLGISIGFAK 124 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + Y V LDK SRTDWL+ PL+E Q +YA ADVWYLLPI KL + + W A + Sbjct: 125 LALHYLEVELDKGASRTDWLSHPLSEIQLQYACADVWYLLPIYHKLAEDLAKTPWQTAVV 184 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC + +RQ V P A+++I+NAWQL ++LA LQ+LA WR+ +A +RDLA+NF+++ Sbjct: 185 EECATLLAKRQIVEDPNKAYKEISNAWQLNQQELAILQILAKWRIEEAEKRDLALNFIIK 244 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKA-QTLPEDALPQPMLNLMD 299 E+ L +A+ P L + +E+R HGK +L LVE+ Q LPE+ P + L+D Sbjct: 245 EQSLLQIAKLQPKHTSILLEF-MHPNEVRIHGKKILWLVEQGKQILPEN-YPPVIRRLVD 302 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 GY+ FK ++ +T+V ++ ELLAS+RQ+NQL W+ + + LPEL+ GWR Sbjct: 303 EAGYKTTFKRLQKRLTEVC-PENLAIELLASKRQLNQLFKWYRNGQDRQKLPELLCGWRE 361 Query: 360 EL 361 + Sbjct: 362 QF 363 >UniRef50_A4SMN8 Ribonuclease D n=2 Tax=Aeromonas RepID=A4SMN8_AERS4 Length = 379 Score = 310 bits (794), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 167/370 (45%), Positives = 233/370 (62%), Gaps = 6/370 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+IT L ++ P +A+DTEFVRTRTYYPQLGL Q++DGEHLAL+DPL + Sbjct: 10 MHYQLITQQAELEQYLASLADVP-LAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPLTL 68 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +PL L LHA EDLE+ + G LP + DTQ+ AF G +S GF + Sbjct: 69 -DLAPLWQRLGRAGQIAILHASGEDLELIQHEAGHLPNQMHDTQLATAFLGYGVSVGFGA 127 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + +E+ GV L K ++RTDWLARPLTERQ EYAAADV YL+P+ K+M + SG Sbjct: 128 LAKEFLGVDLVKDQARTDWLARPLTERQLEYAAADVLYLMPLYEKVMAKLHESGKFAWFE 187 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 EC+ R+ + P A+ DI NAWQL R+LA L+ LA WR ++A RDLA+NFVV+ Sbjct: 188 QECQNHSARKTQGSDPYQAYLDIINAWQLGRRELAILRELAAWRQQEAVRRDLALNFVVK 247 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E HL+ VA P SL +L+ LGL+ EI+ HGK +L +V +AQ D+ P+P+ L+D Sbjct: 248 ELHLFKVAERRPASLRDLNELGLAPIEIKIHGKRMLDIVAQAQRSEPDSWPEPIRRLVDY 307 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL----KPQNNLPELISG 356 P Y+ K IK ++ + ++ I EL+AS++ I+Q W W++ + +++ P L+ G Sbjct: 308 PQYKAELKRIKGMVEEKAKACNIPPELVASKKIIHQYFTWSWRMSDEERARSDKPMLLQG 367 Query: 357 WRGELMAEAL 366 WR EL+ L Sbjct: 368 WRHELVGHLL 377 >UniRef50_Q15S24 Ribonuclease D n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15S24_PSEA6 Length = 400 Score = 304 bits (778), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 160/371 (43%), Positives = 229/371 (61%), Gaps = 5/371 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Y ITTD+ L + C + AIA+DTEFVRTRT YPQLGLIQ++DG+ +ALIDPL I Sbjct: 11 VQYISITTDETLNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQIYDGQQIALIDPLEI 70 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +D++ LKAIL D +I K LH+ SED+E F+ +P+P+ D+Q AA G S G+A Sbjct: 71 SDFTALKAILTDENIVKVLHSCSEDIETFICALDIVPRPIFDSQFAAAITGMGPSLGYAK 130 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE + +DK ESRTDWLARPL+ +QC+YAA DV YL + L +T A G Sbjct: 131 LVEVMLDIQVDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLAQGRQAWVF 190 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + ++ V E + +I N W + + L LQ L WR ++A++RDLA+NFVVR Sbjct: 191 AEMENLTRKKLSQVPYELLYLNIKNNWHVTGKSLYVLQQLTAWRAKEAQQRDLALNFVVR 250 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 E +L VA+ +P S L + GL+ EIR +G+ +L +V A+ + E A PQP+ L+D Sbjct: 251 EANLVEVAKRLPASKNALHQISGLTPQEIRINGQAMLDIVAAAEHVDESAYPQPVERLVD 310 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL----KPQNNLPELIS 355 ++K A++ + +E + EL+ S++QINQL+ W W L + Q LP+L+ Sbjct: 311 FSRFKKVAAAVRQVCVQTAEKLGVPVELIGSKKQINQLIKWCWFLDDDTRAQGLLPDLLE 370 Query: 356 GWRGELMAEAL 366 GWRGE + AL Sbjct: 371 GWRGEHLQAAL 381 >UniRef50_P44442 Ribonuclease D n=25 Tax=Pasteurellaceae RepID=RND_HAEIN Length = 399 Score = 304 bits (778), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 152/371 (40%), Positives = 240/371 (64%), Gaps = 7/371 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +++++T + AL +C + A+ALDTEF+R TY+P+LGLIQL+DGEH++LIDPL IT Sbjct: 29 HFRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLAIT 88 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D+SP A+L +P + K LH+ SEDL VFL F +LP+P+IDTQI+A F G S G A + Sbjct: 89 DFSPFVALLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKL 148 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++Y V +DK +RT+W+ RPL++ Q +YAA DVWYLLP+ L E + W A D Sbjct: 149 AQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRD 208 Query: 182 ECRLMQMRRQEVVA--PEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +C L+ + ++ E A+ DI NAW+L +L+ L++LA WR A ERDLA++++V Sbjct: 209 DCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLALSYIV 268 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + EHLW VA+ P + E+ +GL+ +E+R GK +L L+ +A+ + + P+ + + + Sbjct: 269 KSEHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKEILQLLSQARRISSNDYPKSIERISE 328 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK-PQNNLPELISGWR 358 P Y+K + ++ + ++ ++ E++AS+R + +L+ W WK Q+ PEL+ GWR Sbjct: 329 DPRYKKTIRLLQEKVNSLT-PEGLTPEIVASKRTLEELIKWVWKYDCSQDKRPELLIGWR 387 Query: 359 ---GELMAEAL 366 GE + +AL Sbjct: 388 KPIGEKLVDAL 398 >UniRef50_Q3ICG4 Putative RNase D, processing tRNAs n=3 Tax=Alteromonadales RepID=Q3ICG4_PSEHT Length = 376 Score = 300 bits (768), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 153/371 (41%), Positives = 227/371 (61%), Gaps = 5/371 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+I T + L + E ++ P +A+DTEF+R RT YP++ LIQ++DGEHLALIDPL Sbjct: 1 MHYQLIETQNQLNTFVEQIKNKPVLAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLAE 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 IL+DP++ K H+ SED+EVF G +P PL DTQ G GFA Sbjct: 61 LSLFDFWQILKDPAVLKVFHSPSEDIEVFQKYAGFVPTPLFDTQFALQILGEGNCMGFAL 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MV+ + +DKSESRT+WL RPLT +Q EYAAAD ++LLP ++ +A+ + Sbjct: 121 MVKTLLDIEIDKSESRTNWLQRPLTNKQLEYAAADAYHLLPCFNLIIDSVKAADLFNIVI 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L+ +R+ E ++DI NAWQLR +LA L+ LA WR KA ++LA+NFV++ Sbjct: 181 SESELVANKREFQTPDELLYKDIKNAWQLRPHELAILRELAVWRRNKAIRKNLALNFVLK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 E ++ +A+ P SL L + G+ E+ G +L +E+A+ LPE+ P + L+D Sbjct: 241 EHNMTEIAKRGPASLNALRQIPGVEAIEVNRSGVEILKCIEQAKALPEEQHPAILKRLID 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL----KPQNNLPELIS 355 P Y+K K IK I V++ H I +++AS++Q+NQL++W+WKL K Q+ P+L+S Sbjct: 301 FPSYKKVAKEIKQKINKVAKEHNIPEDVMASKKQVNQLISWNWKLSAAQKEQHIKPDLLS 360 Query: 356 GWRGELMAEAL 366 WR + + L Sbjct: 361 SWRYSFVKDTL 371 >UniRef50_Q47YC8 Ribonuclease D n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YC8_COLP3 Length = 379 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 155/376 (41%), Positives = 235/376 (62%), Gaps = 4/376 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+I +L +LCE + +A+DTEFVRTRT Y +LGL+Q+ DGE LALIDPL I Sbjct: 1 MHYQLIEDQKSLNNLCEQLVKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLAI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +P A+L + +ITK LHA SEDLEVFL P LID+QI+ +F G +S G+A+ Sbjct: 61 DDLAPFWALLTNENITKVLHACSEDLEVFLTAGNCKPVNLIDSQIMMSFLGHGLSLGYAA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MV+ ++ + LDKSESRTDW RPLTE+Q +YA+ADV +L I KL+ E +G+L A Sbjct: 121 MVKHFTDIELDKSESRTDWTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGFLAYAQ 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + M ++ + + + +I W+L +QL L+ LA WR ++A++RDL + FV + Sbjct: 181 IETQSMIDKKFTPIIESEMYLNIKMNWRLNPKQLNLLKYLASWRFQQAKKRDLPLGFVAK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + L ++A+ P S+ + +L G+ +IR GK +LA++ +A+ + P + L + Sbjct: 241 DHTLMALAQSNPESVNAMLTLEGVETLDIRHKGKAMLAVLSQAEQAEVSSYPDKIDRLDE 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP---ELISG 356 PGY++ FK +K+ + SE ++ E +AS++QINQ L W + L N +LI+G Sbjct: 301 YPGYKQIFKKLKTFLITASEQQGLAIENVASKKQINQFLTWQFDLNDARNSSAKVDLITG 360 Query: 357 WRGELMAEALHNLLQE 372 WR EL + L + Q+ Sbjct: 361 WRYELFGQTLLDFAQQ 376 >UniRef50_UPI0000E0E878 ribonuclease D n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E878 Length = 382 Score = 288 bits (737), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 224/376 (59%), Gaps = 5/376 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y +I + DAL C+ IA+DTEFVRTRT+YP +GL+Q++DG +ALIDP+ I D Sbjct: 5 YLLIDSYDALLQYCQQAAQQSVIAVDTEFVRTRTFYPHIGLVQIYDGVDIALIDPIAIDD 64 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 SPL ++ +P + K LHA SEDLE F G +P+PL DTQ+ A G S G+ +V Sbjct: 65 LSPLSQLMTNPQVIKVLHACSEDLETFEFALGVMPEPLFDTQVAAQLAGLGNSVGYGRLV 124 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E +TL+K ESRTDW+ RPL+ Q YAA DV YLLP KL + EAS L DE Sbjct: 125 ELLQDITLEKGESRTDWIRRPLSPEQLIYAAEDVLYLLPCYFKLAEKLEASQQLHWVYDE 184 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + R++ + P+ A+ + N W+L L +QLLA WRL ARE D+ NF++RE+ Sbjct: 185 VNQLIRRKRANIDPKHAYLLLKNTWKLSPLNLYAMQLLAQWRLTFAREHDITQNFILREQ 244 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 ++ +A +PG G L +L ++ E R H T+L +++ A+ PE P + + D+P Sbjct: 245 SMFDIASCLPGHKGALFALDVVTPQEARRHCDTILGIIKTARQAPESDYPDAVQRITDVP 304 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWH-WKLKPQNNL---PELISGW 357 Y+K AIK++ ++ +++ + + AS+RQINQ+++W + L P+L+ GW Sbjct: 305 LYKKHVAAIKAICSEAAQSVGVDSTYFASKRQINQVVSWFVFAFDDTRALGMEPDLLVGW 364 Query: 358 RGELMAEALHNLLQEY 373 RGEL+ + L Q + Sbjct: 365 RGELVGAKITALAQHF 380 >UniRef50_A6FH72 RNase D, processes tRNA n=1 Tax=Moritella sp. PE36 RepID=A6FH72_9GAMM Length = 376 Score = 286 bits (733), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 157/371 (42%), Positives = 223/371 (60%), Gaps = 8/371 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y ++ L + +A+DTEF+R RTYYP LGL QL+ G L+DPL + Sbjct: 1 MEYILVEDQITLQKMIAQCAEVEVLAIDTEFIRQRTYYPILGLFQLYTGTETYLVDPLAV 60 Query: 61 TDWSPLKAIL-RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 D S L +L R P + LHA SEDL+VF+ V + P DTQI AAFCG S GF Sbjct: 61 EDLSSLWQLLDRHPVV---LHACSEDLDVFMTVANKFPDFFHDTQIAAAFCGLGSSLGFG 117 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +V EY +TLDK ESR++WLARPLTE+Q YAAADV++LLP +L + G+ Sbjct: 118 GLVAEYQKITLDKGESRSNWLARPLTEKQLSYAAADVYHLLPCWNELEAKLNELGYYDYY 177 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 L E ++ R+ + P+ ++ NA L RQLA LQ+L +WR A RD+AVNFVV Sbjct: 178 LQELDNLRRRKMQKKNPKTVYKQFKNASFLSPRQLATLQVLGEWRENNAVNRDMAVNFVV 237 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 +E H+ VA+ P SL +L+ L L EI+ HGK ++ +V++ + L +D LP+P+ + D Sbjct: 238 KEAHILEVAKQQPKSLRDLNKLELLPIEIKRHGKQIIEMVKQVELLSDDQLPEPLTRISD 297 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQ----NNLPELIS 355 PGY+K ++I++ I V+E I AEL+ S++ IN+LLNW WKL + + P ++ Sbjct: 298 YPGYKKIVQSIRNKIAVVAEDKNIPAELIGSKKIINELLNWCWKLTAEEREVGDKPIMLC 357 Query: 356 GWRGELMAEAL 366 WR EL+ + Sbjct: 358 NWRAELIGNTI 368 >UniRef50_B4RU88 Ribonuclease D n=2 Tax=Alteromonas macleodii RepID=B4RU88_ALTMD Length = 385 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 155/384 (40%), Positives = 229/384 (59%), Gaps = 11/384 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M YQ+ITT + L +CEA + A+ALDTEFVRT+T P LGLIQL+DG L LIDPL I Sbjct: 1 MQYQLITTFEHLEKVCEAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + P A+L + + K LH+ SEDLE FL F +P P+ DTQI + S G+A Sbjct: 61 DNMQPFVALLENTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSLGYAK 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++LDK ESRTDWLARPL E Q YAA DV YLLP +L +A G + Sbjct: 121 LVELLCEISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGKVHWIY 180 Query: 181 DECRLMQMRRQEVVAPED-AWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +E L+ + ++ PED A+ I N+W+L + QL LQ LA WRL AR++DLA+NFV Sbjct: 181 EEVALL-VEKKRAQMPEDFAYLSIKNSWRLNSEQLTVLQALAAWRLNTARKKDLALNFVF 239 Query: 240 REEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQT----LPEDALPQPM 294 +E HL+ A+ + L + G++ +R +G T++ L+E+A+ PE + Sbjct: 240 KEGHLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEARARYAQTPEKLRLPIV 299 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHW----KLKPQNNL 350 L+D+ Y+K +K++ +++ + ++ +++AS++Q+NQLL W+W + + Q Sbjct: 300 QRLIDIAKYKKYLAELKTISEQIAKDNGVTTDVIASKKQLNQLLKWYWFPVDETRVQGLK 359 Query: 351 PELISGWRGELMAEALHNLLQEYP 374 P+L+S WR L + LL + P Sbjct: 360 PDLLSTWRAPLFRPHVARLLGDEP 383 >UniRef50_A0KXU5 Ribonuclease D n=21 Tax=Shewanella RepID=A0KXU5_SHESA Length = 388 Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 154/369 (41%), Positives = 227/369 (61%), Gaps = 7/369 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +Q ++ + +L +L + P + LDTEFVRTRTYY +LGLIQ +DG+ LALIDP+ + D Sbjct: 23 FQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVALPD 82 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S ++L +P+I K +H+ SEDLEVF + P PL D+QI A+ CG G+A +V Sbjct: 83 LSAFWSLLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGHGLGYAKLV 142 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G +DK ESRTDW+ RPLTE Q YAA DV YL + +L + +A L +E Sbjct: 143 ETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEE 202 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 M R + A+ + NA+QL QLA L++LA WRL KA RDLA+ FV+++ Sbjct: 203 GERMTEGRLATPDMDTAYLRVKNAFQLTEHQLAYLKVLAKWRLEKALARDLALGFVIKDH 262 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM- 300 L ++A+ P S+G+L L L+ E R HGK +L +++ A + P +++++ + Sbjct: 263 GLIALAKKQPKSMGDLLKLNDLTEQEKRIHGKDILRVMQTADL----SNPPELVDVLALK 318 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGY+ AFK IK+ ++++ E H I E+L S+R I++ L W W K Q LP ++SGWRG+ Sbjct: 319 PGYKSAFKNIKTCLSELCEQHAIPMEMLGSKRHIHEYLQWRWD-KQQGELPTVLSGWRGQ 377 Query: 361 LMAEALHNL 369 + AE+L L Sbjct: 378 IAAESLAKL 386 >UniRef50_Q5QWP5 Ribonuclease D n=2 Tax=Idiomarina RepID=Q5QWP5_IDILO Length = 390 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/379 (39%), Positives = 222/379 (58%), Gaps = 9/379 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y+++TT D L LC+ A+D+EFVR RTYY QLGL+Q+ A+IDPL Sbjct: 13 QYRLVTTTDDLQDLCQQAVKCGWFAIDSEFVRERTYYAQLGLLQIHANGTTAVIDPLADI 72 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLN-VFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D PL ++ + LHAG ED+E+F G P+ + D+QI A FCG S G+A Sbjct: 73 DLEPLWQLISGDEVETVLHAGGEDIELFFQQSSGRQPKQIFDSQIAAGFCGLGDSMGYAR 132 Query: 121 MVEE-YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +V+ + GV LDKS SRT+WL RPL++ Q +YAAAD YL + L E G L Sbjct: 133 LVDALFDGVELDKSLSRTNWLKRPLSDEQLDYAAADASYLAIMYPYLKALCEEKGVLDIV 192 Query: 180 LDECRLMQMRRQEVVAPEDA-WRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 +E ++ Q+R++ P+D + + NAWQL RQLA L++L WRL KARERD+ + F+ Sbjct: 193 YEESQI-QVRKRTQSWPDDLLYLGVGNAWQLNPRQLAALKILTPWRLHKARERDIPLGFI 251 Query: 239 VREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 ++ L +AR MP + EL + L+ ++ G+ ++ +++A+ +PE PQ + L Sbjct: 252 AKDGVLLELARRMPKNDDELSRIPDLAPMSRKYSGRDIIRCIQQAEQVPESEFPQTLERL 311 Query: 298 MDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN----LPEL 353 DM GY+ FKAIK +T+++E+ I A L+ASR+QIN +N+HW+ Q P+L Sbjct: 312 DDMEGYKPTFKAIKKAVTELAESLHIPASLVASRKQINDFINFHWQYSTQQQQRLPQPDL 371 Query: 354 ISGWRGELMAEALHNLLQE 372 + GWR + L ++ + Sbjct: 372 MVGWRQHAIGAELQAIISK 390 >UniRef50_A1SVE6 Ribonuclease D n=3 Tax=Psychromonas RepID=A1SVE6_PSYIN Length = 369 Score = 257 bits (657), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 216/373 (57%), Gaps = 9/373 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M +++ITT L + P I+LDTEFVRTRTY LGL+Q+ + LIDP+ + Sbjct: 1 MQFEIITTTAQLHDFIATLDGSP-ISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAV 59 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S + + +I LHA SEDLE+ + G+L L DTQI +F S G+A Sbjct: 60 GDLSSFWQAIDNKNI--ILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAK 117 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MVE V +DK ESRTDW ARPL+E+Q YA DV YL P KL + E P Sbjct: 118 MVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFE 177 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 EC+ + ++ P+ A++ + N ++L + LA ++ LA WRL A+ER+LA+NFVV+ Sbjct: 178 QECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVK 237 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLN-LMD 299 +HLW +A Y P SL +L L L +EIR HG+ +L ++ + + E P P++N L+D Sbjct: 238 ADHLWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYP-PLVNRLVD 296 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL----KPQNNLPELIS 355 P Y+ K+++ I +E + + ELLAS+R IN+ L+W WKL + N P+L++ Sbjct: 297 FPAYKSTVKSMRDKIQLCAEKYDLPLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLT 356 Query: 356 GWRGELMAEALHN 368 GWR EL+ + Sbjct: 357 GWRFELIGHQFEH 369 >UniRef50_A4VJA7 Ribonuclease D n=25 Tax=Bacteria RepID=A4VJA7_PSEU5 Length = 401 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 212/379 (55%), Gaps = 16/379 (4%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Q + D LA LC R P +A+DTEF+R T+YP GL+Q+ DG LIDPL + Sbjct: 30 IETQWVVDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAV 89 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 DW P +L D ++ K LHA SEDLEV L + G LPQPL DTQ+ A + S G++ Sbjct: 90 RDWHPFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGFSMGYSR 149 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLM--VETEASGWLPA 178 +V+ G+ L K E+R+DWL RPL+E Q YAA D +L + L+ + + W+ Sbjct: 150 LVQAVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLSDDKRAWV-- 207 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 L++ + Q PE+A+R++ AW+L+ +QLA L++L WR R+AR R+ N V Sbjct: 208 -LEDGAELVANLQRESDPEEAYREVKQAWRLKPQQLAVLKVLTAWRERQARARNQPRNRV 266 Query: 239 VREEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPED----ALPQP 293 +RE LW +AR P L L + + +R G+ LLA++ +A PE ALP+P Sbjct: 267 LREASLWPLARTQPCDLVTLARIDEMHPRTVRQDGEALLAMIREAAATPEQDWPAALPEP 326 Query: 294 MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL 353 + +++ G K +A+ ++ I+ EL+ ++ + LL + P LP+ Sbjct: 327 L--PLEVSGVLKKLRAVGQ---REAKALDIAPELMLRKKTLEALLKSGYPDGP-YQLPDS 380 Query: 354 ISGWRGELMAEALHNLLQE 372 + GWR E M +AL ++L++ Sbjct: 381 LRGWRRERMGQALLDVLEK 399 >UniRef50_Q21L29 Ribonuclease D n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L29_SACD2 Length = 386 Score = 223 bits (569), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 214/375 (57%), Gaps = 13/375 (3%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 I+T + L CE ++ +A+DTEF+R++TYYP GLIQ+ DGE L+DP I D+SP Sbjct: 13 ISTVEELEECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVNDGEANYLLDPTTIDDFSP 72 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 IL D I K +H+ SEDLEVF + FG LPQ L DTQI AF S GFA MV+ Sbjct: 73 FAEILVDDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFVNLGYSMGFARMVQGV 132 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 GV L K+E+R+DWL RPL+ Q YAA DV YL + KL+ E +A L E + Sbjct: 133 LGVELPKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLLTELKAKERLDWVFGEGKT 192 Query: 186 MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLW 245 + + + P+ ++ + NAW+L +QLA Q L +WR A++RD N +V+E L+ Sbjct: 193 IVKNFSDNLDPKLSYLRVKNAWKLNAKQLAIFQNLCEWRELTAQKRDKPRNRIVKENTLF 252 Query: 246 SVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQT-----LPEDALPQPMLNLMD 299 ++A P + +L + G+S IR G+ LL L+E+A LPE LP+P+ + Sbjct: 253 AMALKRPKHISQLRNYEGMSDRVIRTDGEYLLRLIERADKIEASDLPE-LLPKPLTS--- 308 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 K KA+++ + V++ I++E+LA +++ + ++ + + + + PE WR Sbjct: 309 --AENKRVKALRAEVQKVADEIGIASEILARKKEYDYIVR-DYLARGEWSYPEGFPQWRQ 365 Query: 360 ELMAEALHNLLQEYP 374 L+ + ++ ++ P Sbjct: 366 ALLTDLINETIKVEP 380 >UniRef50_A0YC02 Ribonuclease D n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC02_9GAMM Length = 384 Score = 220 bits (560), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 201/366 (54%), Gaps = 3/366 (0%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 I ++ L C + +ALDTEF+RT T+YP L+Q+ +G LIDPL I D+SP Sbjct: 16 IDDNETLRKFCLQWQHAAVLALDTEFIRTDTFYPIGALLQISEGTGCFLIDPLSIDDFSP 75 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L A+L DP+I K LH+ SEDLEVF +F LPQPLIDTQI A G S G+ M E Sbjct: 76 LTALLTDPAIVKVLHSCSEDLEVFERLFQVLPQPLIDTQIAAGLDGYGFSLGYQKMTEAL 135 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 + + K E+R++WL RPLTE Q YAA DV YL + +L E+ G LDEC Sbjct: 136 LQIHVAKGETRSNWLQRPLTESQIHYAALDVAYLPEMYQQLKQSLESKGRWQWLLDECSP 195 Query: 186 MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLW 245 + + + A ++ + + W+L +RQL L+L+ +WR +AR RD +++++ + Sbjct: 196 LTNGQSDTDAITQYYKKVKSVWKLSSRQLGVLRLVVEWRESEARHRDRPRGRILKDKSCF 255 Query: 246 SVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 +AR P + L S+ G S +R +G+ LL LV L E LP + + P Sbjct: 256 EIARTQPRDVKALSSIEDVGQSTLRNYGQELLKLVMTGIKLAESELPAQLPKPLP-PQTG 314 Query: 305 KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE 364 K +K+ ++ +E +++ ELL +R +LL + + LP + GWR +++ + Sbjct: 315 TLLKQLKAHVSHRAEHLQMAPELLVRKRDYEELLRSGFNNR-DYQLPASLCGWRKDVIGD 373 Query: 365 ALHNLL 370 L N++ Sbjct: 374 DLLNIV 379 >UniRef50_B3PKH0 Ribonuclease D n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PKH0_CELJU Length = 378 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 204/371 (54%), Gaps = 9/371 (2%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 I D LA LC R AIA+DTEF+RT T+YP GL+Q+ DG+ LIDPL I DW P Sbjct: 10 IERADQLAELCVGWRQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAIADWQP 69 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L+ +L D + K LH+ SEDLEVF +P PL DTQI AAF G+A++V+ Sbjct: 70 LRELLLDGKVIKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLGFGLGYANLVKTL 129 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 G+ + K E+R+DWL RPL++ Q +YAA DV ++L + KL+ + S L +C Sbjct: 130 LGIEIPKDETRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQILKTSQRLEWVKSDCAD 189 Query: 186 MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLW 245 + + + +DA++ + AW+LR ++LA L+ L WR +AR+RD+ N +++E LW Sbjct: 190 LVEQARAPDHFDDAYQKVGFAWKLRPQELAVLRQLCIWRETQARQRDIPRNRLIKEPSLW 249 Query: 246 SVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQ---PMLNLMDMP 301 +AR P L +L + + +R G+TLLA+ + P+ P L + P Sbjct: 250 DIARKKPRDLQQLQQIADIPQRTLRNDGETLLAITKSQLESEPSTWPERLDPPLAQSEGP 309 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 KA+K + D ++ I AE+L +++ ++ K LPE + GWR L Sbjct: 310 ----LLKALKQFVRDKADAELIPAEVLIRKKEYEAIVRSGMK-GGDYRLPERLKGWRYTL 364 Query: 362 MAEALHNLLQE 372 + E L + Q+ Sbjct: 365 IGEGLLQVAQD 375 >UniRef50_C4LF08 Ribonuclease D n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LF08_TOLAT Length = 365 Score = 216 bits (551), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 196/364 (53%), Gaps = 3/364 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+Y I +D L L + + + LDTEF+R TY+P+LGL+QL LIDPL I Sbjct: 1 MSYSYIDSDILLQPLLAQISSASTLLLDTEFIRVSTYFPKLGLLQLHLNAVDYLIDPLAI 60 Query: 61 TDWSPL-KAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + L AI D + F H+ EDL+V +LP + DTQ+ AAF G S G+A Sbjct: 61 NSINLLWDAIFSDHRLFVF-HSCKEDLDVLQVCAQKLPGRVFDTQVAAAFLGYGASLGYA 119 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +VE+ VT+ K ++ TDWLARPLT Q YAA DV YL + L E +G Sbjct: 120 GLVEKVCDVTVAKDQTLTDWLARPLTAAQKLYAAKDVSYLQYLYDHLSQELNTTGKTEWF 179 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +E + +Q+ V P++ +R+I+ AWQL +LA L+ LA WR + A D NF+V Sbjct: 180 NEEMTALLEAKQQAVIPDELFREISGAWQLYPSELAVLRELAKWRYQTAISEDKPQNFIV 239 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 REE L ++R P + EL +S + + +L ++K P + P + +MD Sbjct: 240 REEVLADLSRKRPQTERELAQTDISYQQKNRYADAILQCIQKGMECPVELHPARIKRIMD 299 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN-NLPELISGWR 358 P Y+ FK IK + ++ + + ELL SR+ INQ L W ++ K + P++ SGWR Sbjct: 300 FPHYKHDFKQIKQRVEIAAQDNNLPVELLGSRKLINQYLLWTYEGKSSDVEQPKITSGWR 359 Query: 359 GELM 362 +L+ Sbjct: 360 NKLL 363 >UniRef50_C5BMI8 Ribonuclease D n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BMI8_TERTT Length = 393 Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 203/378 (53%), Gaps = 9/378 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q ITT L + C+ +A+DTEF+R++TYYP GLIQ+ DG LIDPL D+ Sbjct: 11 QWITTAAELKACCDKWITQRMLAVDTEFMRSQTYYPITGLIQVNDGNTSYLIDPLAFDDF 70 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL ++ +P + K LH+ SEDLEVF G +P+ ++DTQI +A CG S GF +V Sbjct: 71 TPLAELMENPGVLKVLHSCSEDLEVFHRFLGIVPKHMLDTQIASALCGYGFSVGFGKLVH 130 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 G L K E+R+DWL RPL+ Q +YAA DV YL + + L+++ + G L ++C Sbjct: 131 AVLGEELPKEETRSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGRLTWVAEDC 190 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 M + + A +++ I AW+L RQLA L+ LA WR A+ RD+ N V++E Sbjct: 191 EAMLRQFADNQAVDNSDARIKQAWRLSQRQLAILKKLAQWREEVAQRRDVPRNRVIKEHS 250 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +A+ P + +L L G++ IR G L+A ++ +PE LP P+ + Sbjct: 251 LLDLAQRTPDHVAQLRKLDGINERMIRTDGADLIACIQAGMDVPEHELPAPLPRPLS-GS 309 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN------LPELISG 356 K K ++ ++ +E +++ E+L +R L N L E ++G Sbjct: 310 ENKWAKTVREKVSSEAERLQLAPEILLKKRDYEALTRAFMTPDDINQQIIEARLAEYLTG 369 Query: 357 WRGELMAEALHN-LLQEY 373 WR L+A L +LQ Y Sbjct: 370 WRYNLLAAPLAKVILQSY 387 >UniRef50_A6VYC1 Ribonuclease D n=2 Tax=Marinomonas RepID=A6VYC1_MARMS Length = 384 Score = 210 bits (535), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 203/376 (53%), Gaps = 8/376 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +N + +++LAS C+ P IA+DTEF+R TY+P GLIQ+ +G+ LIDPL I Sbjct: 13 LNIVWVADNESLASWCDYWADLPVIAVDTEFIRRTTYFPITGLIQISEGDKAVLIDPLSI 72 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +W PL+ ++ DPS+ K HA SEDL+VF + G LP P DTQI A+ S + Sbjct: 73 DEWEPLRNLMVDPSVMKVFHACSEDLDVFDRLLGVLPTPFYDTQIGEAYASAQWSLSYVK 132 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++ EY + + K E+R+DW+ RPLT+ Q YAA DV YL + + EA L + Sbjct: 133 LIHEYLQIEVAKDETRSDWVQRPLTDAQKRYAALDVVYLAKVYPMQIARLEAKNMLGWVM 192 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++C ++ + Q PE W I AW+L L L+LL WR +AR+ D+ +++ Sbjct: 193 EDCDSLKWQYQMNSDPEQNWDGIKTAWRLTPAGLTLLRLLFIWRDGQARKEDVPKGQILK 252 Query: 241 EEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + LWS+A+ +P + ++ L+G + R +G+ +L V L D P ++ Sbjct: 253 DRTLWSLAKTLPTHHKAVSEAEELTGRQHRLYGEVILQNVALVNELSPDEYQLP----LE 308 Query: 300 MPGYRKA---FKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356 +P +A KAIK+ I D +E I+ E + R+ ++ L+ + + ++G Sbjct: 309 IPLPSQAGDLTKAIKAFIRDKAEMLNIAPEAMMKRKLLDPLVRHLYDGTEIDLQNPAMTG 368 Query: 357 WRGELMAEALHNLLQE 372 WR +++ + + N ++ Sbjct: 369 WRRDVIVDPILNRFKK 384 >UniRef50_C7RC18 Ribonuclease D n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RC18_KANKD Length = 384 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 120/373 (32%), Positives = 197/373 (52%), Gaps = 2/373 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++ + ++ + L LC++ A +A+DTEF RT TY+ +L LIQ++DG+ + LIDPL Sbjct: 13 VHVETVSDPERLQELCQSWLALKELAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAF 72 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L + S+ K LH+ SEDLE + +G + DTQI A+ G +S G+ + Sbjct: 73 DDLSALTELFASTSVVKALHSCSEDLEALYHQYGFEFNQVFDTQIAASLDGIGLSVGYGN 132 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE + V LDK ++TDWL RPL++ Q YAA DV YL+P+ +L G + Sbjct: 133 IVEHFLSVVLDKEHTKTDWLQRPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKGLFECVI 192 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++ + + +A+ + A++L QL LQ LA WR AR+ ++ FV R Sbjct: 193 EDVNSIFAAIIQADDYAEAYLKVKGAFRLNQFQLNRLQKLAQWRETLARDNNIPKTFVFR 252 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + HL V++ S+G+L S+G IR +G ++ +E A + ++ P+P+ + Sbjct: 253 DHHLIEVSQKEKTSIGDLLSMGCHRGSIRKYGAEMIHQIELADQVDKEQWPEPLQPFHKI 312 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P + F A+K+ + V+ + I AE L +RR I + K + N + WR Sbjct: 313 PKSKAMFNALKAEVEKVANLNSIPAEALCNRRLIEYYIKMTLGFKGRPN--RFWNSWRQR 370 Query: 361 LMAEALHNLLQEY 373 L+ E +QE+ Sbjct: 371 LLEEPFKQAMQEF 383 >UniRef50_A4GIY0 Putative ribonuclease D n=1 Tax=uncultured marine Nitrospinaceae bacterium RepID=A4GIY0_9DELT Length = 386 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 196/370 (52%), Gaps = 10/370 (2%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 ITT D L + CE +++ + +DTEFVR RTY+ + GLIQ+ GEH A IDP+ + D +P Sbjct: 3 ITTTDQLKTFCENIQSADVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIALPDMTP 62 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L +L+DP+ K HA +DLE+ + G++ P+ DTQI AA G FA +V + Sbjct: 63 LLELLKDPTKVKVFHAARQDLEILVRFCGQVIPPIFDTQIAAALVGWGTQISFAKIVYKA 122 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 G + KSE+ TDW RPL++ Q EYA DV YL+P+ KL+ + G L E Sbjct: 123 LGKKIHKSETYTDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVNA 182 Query: 186 MQMRRQEVVA-PEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 + + + P + I N LR R LA LQ +A WR +A +RD ++R+E L Sbjct: 183 WEDPKTFALPDPYQRFMKIKNLRSLRPRNLAVLQEIAAWREGEAVKRDCLAKAIIRDETL 242 Query: 245 WSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 +AR P L + G E+ G ++L+ +E+A LPE L + L + G+ Sbjct: 243 LEIARKAPRDAKTLSGIRGFYQKELNKGGGSILSAIERAMELPESDL----VELPESNGH 298 Query: 304 ---RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 R + + + + SE KI +LA R+QI+ + H++ K + L GWR E Sbjct: 299 ATTRGVEELLSAYVQIRSEELKIEPSVLADRKQIHSFVA-HFEKKEEMEEHFLFQGWRKE 357 Query: 361 LMAEALHNLL 370 L+ + +LL Sbjct: 358 LIGSPMFSLL 367 >UniRef50_B8GL88 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GL88_THISH Length = 396 Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 197/365 (53%), Gaps = 9/365 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + I T + LA+ C + IALDTEFVR +TYYP+L L+Q+ + LA IDP+ + D Sbjct: 15 RFIDTAEGLAAFCGEIAGAQWIALDTEFVREKTYYPRLCLVQVATPDALACIDPIALPDL 74 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL A+L DP++TK +HA +D+E+ L G +P P+ DTQ+ + G G+A MV+ Sbjct: 75 GPLAALLHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDTQVAVSLLGHGDQIGYARMVQ 134 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Y + LDK +RTDW RPL Q YAA DV +L + ++ + E G L ++ Sbjct: 135 IYLDLELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMILKDLEEKGRLDWLSEDF 194 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + P++AWR I L+ QLA LQ LA WR R+A E+DL +++ ++ Sbjct: 195 AAISEESRYLPDPDNAWRRIKGQKYLKGAQLAVLQALAAWRERQAMEKDLPKRWILSDDV 254 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP-QPMLNLMDMP 301 L +++ P L L + GL ++ HG+TLLALV +A++LP A P +P + P Sbjct: 255 LTELSQRSPTDLASLAKVRGLEDKTLQRHGETLLALVREARSLPASAWPARPGPSRGIGP 314 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 + + L+ + + IS +A+R+ + L ++ +P L+ GWR + Sbjct: 315 EHEELVDVAMGLLRHQARINDISPAAIATRKDLEAL----FREEPDCA---LLQGWRARI 367 Query: 362 MAEAL 366 + Sbjct: 368 AGRVI 372 >UniRef50_A4A872 Ribonuclease D n=1 Tax=Congregibacter litoralis KT71 RepID=A4A872_9GAMM Length = 370 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 200/374 (53%), Gaps = 18/374 (4%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MN+ ++ DD+L ++ IA+DTEF+R +YYP + L+QL +H LIDPL I Sbjct: 1 MNWTLVENDDSLRGALASLAGADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 ++ L+A+L D + K LH+ SEDLEVF + G LP PL+DTQ A G+ G+ + Sbjct: 61 SNLDGLRALLTDSACIKVLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLGKGFGLGYRA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+E GV LDK E+R+DWL RPL+E QC YAA DV L+P L E G + L Sbjct: 121 LVKELLGVELDKGETRSDWLKRPLSESQCHYAALDVLELVPAWRILRELAEEQGRMQWVL 180 Query: 181 DE----CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 DE RL++ R ++ +R + +A +L RQL L+ L +WR AR D Sbjct: 181 DEGEEAIRLLKDRDGQI------YRRVKSASRLSRRQLEALRRLCEWREDLARAVDKPRG 234 Query: 237 FVVREEHLWSVARYMP---GSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQP 293 ++V ++ ++A +P +L ELD L S +R G +LLA VE+A L E+ALP P Sbjct: 235 WIVEDKAFLAIAMAIPEDHDALAELDV--LPASVLRKQGDSLLACVEQALQLSEEALP-P 291 Query: 294 MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL 353 L P R KA+++ ++ ++ E+L S + ++ PE Sbjct: 292 ALPGPLTPPQRNLLKALRTEAKSIAAGLNVAPEILISTADLELII--REASGEAITEPER 349 Query: 354 ISGWRGELMAEALH 367 GWR E + + L Sbjct: 350 WQGWRAEAVIQPLR 363 >UniRef50_B8KGY1 Ribonuclease D n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KGY1_9GAMM Length = 372 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 188/344 (54%), Gaps = 12/344 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M + ++ +D+ALA +A+ IA+DTEF+R TYYP + L+QL +H LIDPL + Sbjct: 1 MTWTLVESDEALAEALDALSNASEIAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD L+A++ D K LH+ SEDLEVF + G +P PLIDTQ A G+ G+ + Sbjct: 61 TDLDGLRALMTDTGCWKVLHSCSEDLEVFRHWLGVVPSPLIDTQRATALLGKGFGLGYRA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E GV LDK E+R+DWL RPL++ QC YAA DV L+P L + G + L Sbjct: 121 LIELLLGVELDKGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILKDLALSQGRMEWIL 180 Query: 181 DE----CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 DE RL+ R +++ +R + +A +L RQL L+ L +WR AR D Sbjct: 181 DEGEEAIRLLNERDRDI------YRRVKSASRLSPRQLDALRRLCEWREALARSVDKPRG 234 Query: 237 FVVREEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPML 295 ++V ++ ++A+ MP + L L L S IR G TLLA V A+ + +DALP + Sbjct: 235 WIVEDKACIAIAQSMPADIEALTDLDVLPASVIRKQGDTLLACVRGAKDVSQDALPDALP 294 Query: 296 NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLN 339 + P R K ++ ++E ++ E+L S + LL Sbjct: 295 GPLAAP-QRNVLKTLRQRARQIAEELNVAPEILISTADLELLLR 337 >UniRef50_A4BJR0 Ribonuclease D n=1 Tax=Reinekea blandensis MED297 RepID=A4BJR0_9GAMM Length = 380 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/377 (33%), Positives = 202/377 (53%), Gaps = 16/377 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Q I + ALA + + A IALDTEFVRT ++Y LGLIQ+ + + LIDPL I Sbjct: 4 QFQWIDNNAALAQVADEWAAASVIALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQIN 63 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 DW+PL +L DP+I K LHA SED EV + G Q + DTQI A F G P+ +A + Sbjct: 64 DWAPLVRVLSDPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFLGHPVQMSYARL 123 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI---TAKLMVETEASGWLPA 178 VE V L K +R+DWL RPL + QC YAAADV +L + A + E W+ Sbjct: 124 VEAICDVELPKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQLKEQNRYAWV-- 181 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 A D R++ R V P+ ++ + AW+L+ +L LQLL +WR AR + + Sbjct: 182 AEDSQRMVSNNRP--VPPQSYYQKLRGAWKLKGERLLVLQLLCEWRENLARATNSNRGRI 239 Query: 239 VREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 ++++ L ++A MP S L + + +IR +G L+A++E+A+ + P+ Sbjct: 240 LQDKDLITLAEKMPTSRSMLQKQVNIPSRKIRLYGDELIAMIERARDSRREDWPE----R 295 Query: 298 MDMP---GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 +D P + K ++ ++ V+E + AE+LA R+ + L + +P++ Sbjct: 296 IDSPLPADQAQLLKDVRQVVNTVAEQLNLPAEILARRKSLEAWLRSGARTG-DYEVPDIF 354 Query: 355 SGWRGELMAEALHNLLQ 371 +GWR E + + + ++ Sbjct: 355 TGWRQEFLVDPISQCIR 371 >UniRef50_B5JVS3 Ribonuclease D n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVS3_9GAMM Length = 384 Score = 200 bits (508), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 18/376 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 + Q I +L +LC+ + + LDTEF+R +TYYPQL LIQ+ + + +A IDPL I Sbjct: 3 DIQYIQDTASLKTLCQQLAGSEWLTLDTEFLREKTYYPQLCLIQIANHDLIACIDPLAID 62 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D +PL A+L D SI K LHA +D E+ + P+P+ DTQ+ A+ G G+A + Sbjct: 63 DLTPLYALLHDESIVKVLHAAVQDQEILYQSSQQPPKPVFDTQVAASLLGYGDQMGYAKL 122 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG---WLPA 178 VE+ GV LDKS+SRTDW RPL E+Q +YAA DV +L I L E E G WL Sbjct: 123 VEKICGVQLDKSQSRTDWSRRPLNEKQIDYAADDVRHLREIYQHLKTELERLGRSDWLQK 182 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 D+ L +R + P+ A++ + +LR +QL L+ LA+WR ++A +++ ++ Sbjct: 183 DFDD--LANPQRYD-PDPDSAYKRVKQYRRLRPKQLVILKALAEWREKRAMDKNKPRKWI 239 Query: 239 VREEHLWSVARYMPGSLGELDSLGLSGSE--IRFHGKTLLALVEKAQTLPEDALPQ-PML 295 ++ L + + P ++ E+ L S SE ++ G+ +L L++ AQ P++ P P Sbjct: 240 ASDDLLMDLCKIQPKTVAEIGQLR-SASEGFVQHQGQYILDLMQSAQQTPQEQWPVLPSY 298 Query: 296 NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELIS 355 + P + + +++ + I+ L SR+Q+ QL+ + ++P L+ Sbjct: 299 QAL-TPNQEAQVDYLMAAAKLIADDNNITTGSLVSRKQLEQLVQGN------RDIP-LMK 350 Query: 356 GWRGELMAEALHNLLQ 371 WR ++ ++L NLL+ Sbjct: 351 SWRYTVLGQSLVNLLE 366 >UniRef50_B7RU98 Ribonuclease D n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RU98_9GAMM Length = 373 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 135/384 (35%), Positives = 206/384 (53%), Gaps = 28/384 (7%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLA----LI 55 M++Q++ +D ALA L A A+ +DTEF+R T+YPQ+ L+QL F G +I Sbjct: 1 MDWQLVESDAALAELMNAAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTAWMI 60 Query: 56 DPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 DPL I D +PL + +D + K LH+ SEDLEVF G LP PL DTQ AA G Sbjct: 61 DPLKIEDPAPLANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALVGLDFG 120 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLP---ITAKLMVETEA 172 G+ SMV E L K E+R+DWL RPLTE QC YAA DV +LL I A+ + Sbjct: 121 LGYRSMVLELCNEDLPKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERCHSMQR 180 Query: 173 SGW-LPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARER 231 W L + CR + ++ +R I AW+L R+LA L +++WR R ARE+ Sbjct: 181 YDWVLEDGEEACRGLA-----SMSSAQYYRRIKGAWKLEPRELAALIAISEWRERTAREK 235 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQTLPEDAL 290 D ++++ ++ +A+ P ++ +L S + + GS +R +G+TLL LV + +PE L Sbjct: 236 DKPRSWIIDDKACLQLAQVGPANMNDLRSKIEMHGSSMRRYGETLLDLVAEQSAVPEAEL 295 Query: 291 PQPM---LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQ 347 P + LN + RK K +K + ++ ++ ++L + + L+ + P+ Sbjct: 296 PATLPAPLNSVQ----RKQMKKLKQITEKIALDLGVAPQVLVASKDYEVLI----RKDPE 347 Query: 348 NNLPELISGWRGELMAEALHNLLQ 371 P +GWR + E L +LL+ Sbjct: 348 Q--PAAWAGWRRLKIIEPLRSLLE 369 >UniRef50_Q605A6 Ribonuclease D n=1 Tax=Methylococcus capsulatus RepID=Q605A6_METCA Length = 388 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 196/374 (52%), Gaps = 17/374 (4%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NY I + LA+ C ++ P IA+DTEF+R +TYYP+ L+Q+ +G A IDPL I Sbjct: 9 INY--IDSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLAI 66 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D ++ +L + +ITK HA +DLE+F + F +P P+ DTQ+ A G P G+AS Sbjct: 67 EDLREVECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLVGHPEQVGYAS 126 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V GVT+DK +RTDW RPL+ Q EYAA DV +L + ++ + E G + Sbjct: 127 LVSAMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLGRYAWLV 186 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DE ++ V PEDAW+ I +L+ Q A LA WR A++ DL N+++R Sbjct: 187 DEFAALEEPDLYVNRPEDAWQRIGGLDRLKPEQFALAVRLAAWRENTAQQNDLPRNWILR 246 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKA---QTLPEDALPQPMLN 296 +E L +A P + L +L G+ ++ +G ++ALV+ A Q +P PQP Sbjct: 247 DEALLEIALRRPRNRDALQALRGIDSRMVQRYGDAMIALVQDAGSGQAVP----PQPRRG 302 Query: 297 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356 A+ +L+ H I+ ++ASR+ + +LL + +++ G Sbjct: 303 QRRSAQTEAILDAMSALVRLRCIEHTINPAVVASRKDLEELLE-------SPDGAKVLHG 355 Query: 357 WRGELMAEALHNLL 370 WR L+ L L Sbjct: 356 WRRALVGNDLRAFL 369 >UniRef50_Q2BKH7 Ribonuclease D n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKH7_9GAMM Length = 397 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 4/368 (1%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 IT+ + L+ CE R P IALDTEF R T+YP GLIQ+ D + LIDPL I+D+S Sbjct: 22 ITSAEQLSECCEKWRNLPLIALDTEFQRVDTFYPLPGLIQVADDQACYLIDPLEISDFSS 81 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L + +D + K +HA +EDLE+F G LP PL DTQI AA S G M+E Sbjct: 82 LSTLFKDEGVVKVMHAATEDLELFHKEIGALPVPLFDTQIAAALINWGFSMGLQRMLESC 141 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 V L+K E+ ++WL RPLT Q +YAA DV YL I E + G EC Sbjct: 142 LSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLSRGHFHWVEQECSA 201 Query: 186 MQMRRQ-EVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 M + V + T W+L +LA L+ L WR ++AR+R++ N ++R + + Sbjct: 202 MLADAAIDDVDGFSYYTRFTQMWRLPKHKLAALRDLTAWREQQARKRNVPRNRILRNQAI 261 Query: 245 WSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 + P L +L L + S +R G+ +L ++ + + P+P+ + + Sbjct: 262 LQIIEQWPKGLADLSRLDEIKKSILRTDGEVILGFLKGGEASADKVEPEPIPQPLHY-FW 320 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 K K +K++ ++E + + E+L R+++ QL+ + + LP+ +S WR E++ Sbjct: 321 NKHLKKLKAIARRLAEENNTAPEMLLRRKELEQLIRSGVD-EGEYRLPQAMSAWRKEMLD 379 Query: 364 EALHNLLQ 371 AL + LQ Sbjct: 380 AALMDELQ 387 >UniRef50_C0N8D2 Ribonuclease D n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8D2_9GAMM Length = 379 Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/382 (31%), Positives = 196/382 (51%), Gaps = 31/382 (8%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Q I + L LCE + +A+DTEF R +TYYPQL LIQ+ + + +A +DPL I Sbjct: 1 MTIQFIDSSAGLKDLCEQLAESTWLAIDTEFHREKTYYPQLCLIQVANDDVIACVDPLKI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SPL + +T HA +DLE+ + LPQ + DTQ+ A G G+ + Sbjct: 61 DDLSPLMDVFYRTDMTLVFHAARQDLELLFLLRDALPQQVFDTQLAATVLGYGDQIGYGN 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASGWLP 177 +V++ V LDK+ +RTDW RPL+ Q +YAA DV YL + +L +V+T WL Sbjct: 121 LVKQCLNVDLDKAHARTDWRQRPLSPEQIDYAADDVRYLRELYHQLEAKLVDTGRINWLK 180 Query: 178 ---AALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLA 234 A L Q PE +W I + +L++ QLA LQ L WR ++A +++L Sbjct: 181 EDFATLSATETYQSN------PESSWLRIKGSGRLKSSQLAVLQQLGVWREQRAIKQNLP 234 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED----- 288 ++++++ + +AR+ P SL ++ + GL +I HG+ +L +E + +P++ Sbjct: 235 RRWIIKDDVMLDLARFSPSSLDAMNKIRGLESRDIDRHGQAILKAIEAGKAVPQEQWPVM 294 Query: 289 ALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN 348 PQP+ N D A+ L+ + + I+ +A+R+ I L+ ++ Sbjct: 295 KRPQPLSNQQDA-----LVDALMGLLRKLCDEQTITPVAVATRKDIEALV--------RD 341 Query: 349 NLPELISGWRGELMAEALHNLL 370 + GWR E++ + L L Sbjct: 342 QDSPIKHGWRHEIVGQKLEQFL 363 >UniRef50_A4E7K3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7K3_9ACTN Length = 377 Score = 186 bits (473), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 122/372 (32%), Positives = 191/372 (51%), Gaps = 20/372 (5%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 I+T AL C+ R F AIA+DTEF+R RT++P+L L+Q+ +DPL I D SP Sbjct: 3 ISTHQALLDFCQRAREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPLVIDDLSP 62 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L ++ D S+TK HA S+D+EV L+ G LP+P+ DTQ+ AAF G + ++V+ + Sbjct: 63 LAELMADESVTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFLGERQQISYGALVQTF 122 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 GV+L K+ES TDW RPLT++Q EYA DV YL+ ++M G + LDE R Sbjct: 123 CGVSLPKTESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRELGRVDWVLDELRP 182 Query: 186 MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLW 245 + +A+R + QL + LA WR +A R++ +V+ ++ L Sbjct: 183 LADESHYRADRHEAFRKVKRINSCSRHQLGIARELAAWREDRAERRNIPRKWVMSDDTLL 242 Query: 246 SVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRK 305 ++ + P + E S+ + L +++ + P D LP LM + G+R+ Sbjct: 243 ALVKRNPVRVEEFRSIRGTDQLGERDVDGALMAIKRGASCPHDRLP-----LM-VRGHRQ 296 Query: 306 AFKAIKS-------LITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 ++S LI V+E ++ ++ASR + + H + P L GWR Sbjct: 297 ISPELESVTDLMYALIRLVAERSGVATSVIASRDDLADYIE-HPEQSP------LREGWR 349 Query: 359 GELMAEALHNLL 370 EL+ L +LL Sbjct: 350 FELVGSRLDDLL 361 >UniRef50_Q2SIW8 Ribonuclease D n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIW8_HAHCH Length = 398 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/352 (32%), Positives = 185/352 (52%), Gaps = 6/352 (1%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 +A+DTEF+R T+YP L+QL+D + + L+D L ITDWS + + I K +HA SE Sbjct: 39 LAVDTEFIRGTTFYPAPALLQLYDRQCVYLVDMLKITDWSGVSRLFESRDILKVVHACSE 98 Query: 85 DLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPL 144 DLE+F V P LIDTQ+ A ++ G S+V + G+ L+K +R+DW RPL Sbjct: 99 DLELFNCVGLSQPCGLIDTQVANALLDGELNEGLQSLVRQNLGIELEKHATRSDWTQRPL 158 Query: 145 TERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDIT 204 T++Q +YA DV L P+ KL SG AL+E M++ V + + Sbjct: 159 TDKQIQYAQEDVVVLWPLYQKLAEALRLSGKYEIALEEGEAMRLAAAGVQDMGRYYLKLR 218 Query: 205 NAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GL 263 W+LR L LA WR ++AR RD+ + ++ L ++A+ P +LG+L + + Sbjct: 219 GGWRLRKGAQQLLAKLAAWREQEARGRDIPRKKICPDDELIAIAQRRPRTLGQLTEITSI 278 Query: 264 SGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP---GYRKAFKAIKSLITDVSET 320 G+ +R +G L+ +V + D P+ ++ P Y+ K +K L ++ Sbjct: 279 QGAGLRRYGAELVGMVREHMKADGDE-PETGFEMIRPPIPREYQDLVKKVKKLTQKLARE 337 Query: 321 HKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQE 372 H+I+ LLASR + + + WH + P+L+ GWRG + + L LQ+ Sbjct: 338 HRINVGLLASRGLLEEFVYWHIQ-GGAGTQPQLLQGWRGRICSAPLERWLQD 388 >UniRef50_Q0VNN2 Ribonuclease D n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VNN2_ALCBS Length = 357 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 189/359 (52%), Gaps = 19/359 (5%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRD 72 ASL R + LDTEF+R RT++PQL L+Q+ DG + LID + D L + ++ Sbjct: 17 ASLAAGSRLY----LDTEFMRERTFWPQLALVQVHDGVRIRLIDTTEV-DGPTLLPVFQN 71 Query: 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDK 132 ++ +HA SEDLE G+ P + DTQI AA G M WG+ +V+ GV L K Sbjct: 72 HTLV--MHACSEDLEAIATFTGQYPAAIEDTQIAAALSGEDMQWGYQKVVQMLLGVDLPK 129 Query: 133 SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC-RLMQMRRQ 191 +RT+WL RPL++ Q YA DV YL + L + G +EC RL++ R Sbjct: 130 GATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWEEECARLLKQARS 189 Query: 192 EVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYM 251 +V+ P+DAWR++ A L+ LA L LA WR + ARERDL +FV+++ L +AR Sbjct: 190 QVL-PQDAWRNVKGAGLLQGESLAVLAALAPWRDQMARERDLPKSFVLKDAQLLDLARTN 248 Query: 252 PGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIK 311 G L LG +IR G LLAL+E+A+ ++ +K K ++ Sbjct: 249 RTDRGLLADLGFHPKQIRRDGDALLALIEQARGQTPPDPLPGPPDM----AQKKLAKTLR 304 Query: 312 SLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLL 370 S + ++E + ++L RR + L ++ +PE ++GWR +++ + L LL Sbjct: 305 SRVAIIAEELNMKPDVLMRRRWLEAL------IRHPERVPEPLTGWRNDVVTQPLLELL 357 >UniRef50_Q1QXJ4 Ribonuclease D n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXJ4_CHRSD Length = 375 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 201/378 (53%), Gaps = 12/378 (3%) Query: 2 NYQM--ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPL 58 N+++ + T AL C+A+ +A+DTEF R T++P L+QL+ G+ + ++DP Sbjct: 4 NFEIRWVATPGALDDACDALAGAEWLAVDTEFHRESTFFPIAALVQLYAGGDAVYMVDPR 63 Query: 59 GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 ++ L+A+L K LHA EDLEV + P+ DTQ+ + G S G+ Sbjct: 64 AVSASPALQALLSVSGPLKLLHASGEDLEVLESWAEVGVAPIADTQVAQSLLGTQASLGY 123 Query: 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 +VE ++G L K E+R+DWL RPL++ Q +YAA DV YL I G L Sbjct: 124 QRLVEHWTGDVLPKEETRSDWLQRPLSDAQLQYAALDVVYLPRIWEAQRDALMREGRLAW 183 Query: 179 ALDEC-RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 +EC RL R++V A E +R W+L RQLA Q L WR + R RD+ + Sbjct: 184 LEEECARLCDANRRDVNADEHWYRRHRQLWRLEPRQLALYQSLTRWREGEVRRRDVPRGW 243 Query: 238 VVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLN 296 + ++ L+++A MP + +L ++ G+ + I+ G LL +V+ A L EDALP+ L Sbjct: 244 LASDKVLFAIAMAMPRNRHQLAAVEGVRPTLIKHDGDALLEMVQAAAHLAEDALPR-ALP 302 Query: 297 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP-ELIS 355 P ++ KA+KS++ +E I+ E+LA+RR + L+ + + +P L Sbjct: 303 APQSPAFKSRLKALKSVVNREAERLDIAPEVLANRRDLEALV-----MADLDGVPLSLPQ 357 Query: 356 GWRGELMAEALHNLLQEY 373 GWRG L+ +A L ++ Sbjct: 358 GWRGTLLGDAFTQALADH 375 >UniRef50_B9CJZ2 Ribonuclease D n=2 Tax=Atopobium RepID=B9CJZ2_9ACTN Length = 376 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 188/369 (50%), Gaps = 15/369 (4%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 I+T + L S C P +A+DTEF+R +TYYP+L L+Q+ GE +A IDPL I D SP Sbjct: 3 ISTQEELISFCLRAAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLSIDDLSP 62 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L + D I K +HA S+DLEV L P+ DTQ+ AAF G +AS+VE Y Sbjct: 63 LVRLFEDQKIVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFLGMRQQASYASVVEHY 122 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE----TEASGWLPAALD 181 GV L K+ES TDW RPL Q YA DV Y LP + M E T GWL ++ Sbjct: 123 MGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRY-LPDIYRCMYERLMKTNRLGWLMPEMN 181 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + +++ P++A+ + + L RQ+A + + WR +A + ++ +++ + Sbjct: 182 AYTAPENFKRD---PKEAYLHLKRSNSLTRRQMALAREICAWREERAAQHNIPRKWIISD 238 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 E L + + P + L + + S + ++LA ++ +++P + P + Sbjct: 239 ETLVEICKRSPATSERLKRIRGTESLSQESVASILAAIKVGRSIPPEECPVIEHHSRPAA 298 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 G + + +L+ VSE I+ +L+A++ + LL Q +L GWR EL Sbjct: 299 GSEGVLELMYALVKIVSEKEGIAPQLIANKNDLADLL-------AQKKDSKLSCGWRHEL 351 Query: 362 MAEALHNLL 370 + + L LL Sbjct: 352 VGKQLQGLL 360 >UniRef50_B4X4T0 Ribonuclease D n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4T0_9GAMM Length = 375 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 188/370 (50%), Gaps = 13/370 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y + A++ + A + LDTEF+R RT++PQL L+Q+ DGE + LID + Sbjct: 19 MAYLWCEDNQAISEWQGGLTAGTPLYLDTEFMRERTFWPQLALVQVHDGEQIRLIDTTRV 78 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L + + ++ +HA SEDLE G+ P + DTQI AA G M WG+ Sbjct: 79 -DGPTLSPVFQQHTLV--MHACSEDLEAIATFTGQYPAAIEDTQIAAALSGEDMQWGYQK 135 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ GV L K +RT+WL RPL++ Q YA DV YL + A L + G Sbjct: 136 VVQMLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAAILAERLDKLGRRAWWQ 195 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC + + + V +DAWR++ A L+ LA L L WR + ARER+L +FV++ Sbjct: 196 EECERLLNQARSVTPAQDAWRNVKGAGLLQGESLAVLAALTPWRDQMARERNLPKSFVLK 255 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L +AR G L LG +IR G LLAL+E+ + P L Sbjct: 256 DAQLLDLARASRSDRGLLADLGFHPKQIRRDGDALLALMEEGRR----QTPPDPLPGPPD 311 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +K K +++ + ++E + ++L RR + L ++ + +PE ++GWR + Sbjct: 312 AAQKKLAKTLRNRVGVIAEEMDMKPDVLMRRRWLEAL------IRHPDRVPEPLTGWRHD 365 Query: 361 LMAEALHNLL 370 ++ + L LL Sbjct: 366 IVTQPLLELL 375 >UniRef50_Q0F2Y2 Ribonuclease D n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2Y2_9PROT Length = 398 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 21/379 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + I T D L + + +DTEF R T+YP+ L+Q++ +IDP+ I D Sbjct: 7 EFINTPDQLRQAAATMAECQVLCVDTEFHRESTFYPEFALLQIYGNGQCWVIDPITIKDL 66 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +P+ I+ +P+I K HA +D+E+ N G LP PL DTQ+ AA G GF ++V+ Sbjct: 67 APVWDIMLNPAILKVFHAARQDIEIIFNEAGGLPLPLFDTQVAAALLGYGQQVGFGNLVQ 126 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + L K ES TDW ARPLT++Q YAA DV +L+P+ L EA+ Sbjct: 127 RITKKLLPKGESFTDWKARPLTKKQMAYAADDVIWLMPVFQHLKERLEAA-------KRT 179 Query: 184 RLMQMRRQEVVAPE-------DAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 + +Q +Q + +PE DA+ + +L+ R LA LQ +A WR R A++RD+ Sbjct: 180 QWLQEEQQTLCSPETYQPNDADAFWRVKGFNRLKGRHLAVLQEMAAWRERSAQQRDIPRR 239 Query: 237 FVVREEHLWSVARYMPGSLGELDSL----GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ 292 ++ +E L +AR L +++++ G++ I+ G ++A ++ E++ P Sbjct: 240 RMIADEPLLELARR---DLLDIETMQRIRGINAGFIKRFGDEIIACWQRGMERTEESWPS 296 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPE 352 + G + + +L+ +E +IS +LAS+ ++ L +W ++ K + Sbjct: 297 MEARRSNTHGTDLRLEMLDTLVRLKAEEGEISGTILASKSDLSALASWGYRCKGEPPEVA 356 Query: 353 LISGWRGELMAEALHNLLQ 371 + GWR EL+ L LL+ Sbjct: 357 CLHGWRYELVGHDLIRLLR 375 >UniRef50_Q2RSM2 Ribonuclease D n=10 Tax=Alphaproteobacteria RepID=Q2RSM2_RHORT Length = 386 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 191/367 (52%), Gaps = 18/367 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 +I+T LA C + + +DTEF+R +TY+P+L LIQL +DPL D Sbjct: 3 LISTTKDLADFCARLSTESFVTVDTEFMREKTYWPKLCLIQLAGTTEAHCVDPLAPDIDM 62 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL A++ + S+ K HA +DLE+FL+ G LP+P+ DTQ+ A CG S G+ ++V Sbjct: 63 APLFALMANESVLKVFHAARQDLEIFLHESGHLPKPIFDTQVAAMVCGFGDSVGYETLVA 122 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD-E 182 + + +DKS TDW RPL +RQ YAA DV +L + +L ET A+ A LD E Sbjct: 123 KLAKARIDKSMRFTDWARRPLNDRQLVYAAGDVTHLRVVYERL-AETLAANGRTAWLDQE 181 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ V PEDAW I A R LA LQ LA WR R A+ERDL N V+R+E Sbjct: 182 MAILTDPAHYRVEPEDAWMRI-KARSRSARFLALLQELAAWRERTAQERDLPRNRVMRDE 240 Query: 243 HLWSVAR---YMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 L +A P +L +L S+ +E G +L V AQ +PE ALP P + D Sbjct: 241 GLLEIAASAPTTPDALSQLRSVSKGMAEGTM-GLGILEAVRLAQAIPEKALPHPP-DRED 298 Query: 300 MP-GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL-ISGW 357 +P G +K L+ E ++ +L+A+ +N ++ +N L + GW Sbjct: 299 LPQGLGPVVDLLKVLLKMKCEEAGVAQKLVAN-------MNDLERIAADDNADVLAMEGW 351 Query: 358 RGELMAE 364 R L E Sbjct: 352 RRALFGE 358 >UniRef50_B9ZRL3 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZRL3_9GAMM Length = 392 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 123/382 (32%), Positives = 191/382 (50%), Gaps = 36/382 (9%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ +I T +AL + +++ IALDTEF+R +TYYPQL L+Q + LA IDPL + Sbjct: 3 DHGLIETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPLRL- 61 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L + RDP ITK HA S+D+E+ G +P P+ DTQI A+ G G+A++ Sbjct: 62 DIQQLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASMLGYGEQVGYANL 121 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V+ LDKS++RTDW RPL+ Q YAA DV +L + +L+ E LD Sbjct: 122 VKTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHE----------LD 171 Query: 182 ECRLMQMRRQEVVA----------PEDAWRDITNAWQLRTRQLACLQLLADWRLRKARER 231 M R E+ A PE +W+ ++ +L+ ++ L+ +A WR R A+ Sbjct: 172 THDRMHWLRPEMEALSNPALYEPDPEQSWQRVSGVKRLKPKERGVLKCVAAWRERTAQSS 231 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDAL 290 + +V+ ++ L +AR P L L G H ++LLA + + Q LP + Sbjct: 232 NRPRRWVLSDDLLLDIARRTPADAQGLRELRQFPGGMKPEHTESLLAAIREGQALPREQW 291 Query: 291 PQ----PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKP 346 PQ P L+ D +L+ + + H+ISA +A R+ + +L LK Sbjct: 292 PQLPEKPRLDERD----EVLVDIGMALLRECAREHQISAAAIAQRKDVIEL------LKS 341 Query: 347 QNNLPELISGWRGELMAEALHN 368 L SGWR E+ + + + Sbjct: 342 DGKSGRLSSGWRREIAGQTIQH 363 >UniRef50_C8WAD1 Ribonuclease D n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WAD1_ATOPD Length = 379 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 191/377 (50%), Gaps = 19/377 (5%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+ I T + L + CE + +A+DTEF+R +TY+P+L L+Q+ G +A IDPL I Sbjct: 1 MDALYIATSEELFAFCERAKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPLLI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +PLK +L +P I K LHA S+DLEV L P+ DTQ+ AAF G +A Sbjct: 61 DDLTPLKELLENPEIVKILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGMRQQVSYAG 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASGWLP 177 +VE ++ V L K+ES TDW RPL + Q YA DV YL I ++ +++ + WL Sbjct: 121 LVENFANVKLAKAESLTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDRLSWLK 180 Query: 178 AALDE-CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 +D+ + Q RR P A+ + + L RQLA + + WR A +RD+ Sbjct: 181 PEMDQHTNIDQYRRD----PYQAYLRLKRSGSLTRRQLAIAREVCAWREEIAAKRDVPRK 236 Query: 237 FVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKT--LLALVEKAQTLPEDALPQPM 294 +V+ +E + + R +P + L + G+E G LL +++ Q P P+ Sbjct: 237 WVLSDELIIEICRRVPTTSDRLRK--IRGTEQISQGGVVHLLDAIKRGQKTPAGQCPKIE 294 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 + G + + +LI VSE I++ L+A++ + LL + L Sbjct: 295 HHAHPSAGSEGVVELMYALIRIVSEKEGIASPLIANKDDLTDLLLDKDDAR-------LK 347 Query: 355 SGWRGELMAEALHNLLQ 371 +GWR +L+ + L LL Sbjct: 348 TGWRYQLVGKQLVGLLN 364 >UniRef50_Q1YTB3 Ribonuclease D n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTB3_9GAMM Length = 374 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 181/369 (49%), Gaps = 18/369 (4%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 I LA LCE ++ +A+DTEF+R+ T++ +L LIQL DGE LID I P Sbjct: 8 IDNSQQLAELCEQLQDATELAIDTEFMRSDTFFAKLALIQLSDGEQCWLIDTPAIEQLQP 67 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L A+L P +T H+ EDLEV V P+ L D+Q+ A S G+A +VE Sbjct: 68 LTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIVNIGYSMGYARLVENM 127 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI----TAKLMVETEASGWLPAALD 181 + L K ++R+DWLARPL++RQ YAA DV YL I L + S + LD Sbjct: 128 LQIELGKEDTRSDWLARPLSDRQKRYAADDVLYLFRIYKLLLELLEQQQRQSWFAEEMLD 187 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 R+ RR+ + D + + AW+L LA L+ L +WR R AR D + +V++ Sbjct: 188 LQRVAAERREAL----DYYLRVKGAWRLDALSLAVLKRLCEWRERAARALDKPRSHIVKD 243 Query: 242 EHLWSVARYMPGSLGELDSLG--LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 L +A P + +L + S S RF + L + D LPQP+ Sbjct: 244 NVLLELANNKPTHMSQLHQIDDWYSRSVKRFGEQVLQEIANVDHNDLPDELPQPLSR--- 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP-ELISGWR 358 K ++ I +++E I EL+ +++++ +L ++ + P L+ GWR Sbjct: 301 --AVSDVMKKMRVSINELAENQAIPKELMCNKKELESIL--RTTVEGKCVWPVRLVDGWR 356 Query: 359 GELMAEALH 367 G ++ AL Sbjct: 357 GSMVIPALQ 365 >UniRef50_Q1N1A2 Ribonuclease D n=1 Tax=Bermanella marisrubri RepID=Q1N1A2_9GAMM Length = 382 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 113/380 (29%), Positives = 191/380 (50%), Gaps = 25/380 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + I T LAS CE IALD+EF+R T+YP+L LIQ+ DG L+DP+ I Sbjct: 2 KYIDTHIDLASACEHWNTCNRIALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRINRA 61 Query: 63 ---------WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP 113 W PL +L + ++ K LH+ SED + F + G +P P+IDTQ AA Sbjct: 62 HRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMASID 121 Query: 114 MSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS 173 G+ +V++ + L+K +R+DWL RPLT+ Q YAA DV +LL IT +L + Sbjct: 122 GIMGYQKLVKQLLDIDLEKGATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQLVTQ 181 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDAW--RDITNAWQLRTRQLACLQLLADWRLRKARER 231 G L++C +M ++ E + I AW L+ +QL L+ L WR R+ R Sbjct: 182 GRWTWLLEDCE--RMVEDWLIGQEQGYGIERIKKAWMLKPKQLFTLEKLLAWRERRCRTV 239 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPE--- 287 + ++ + L +A +P S +L S+ G+ +R G+ ++ ++++ + Sbjct: 240 NKPRGHILNDSLLVDLAMRLPTSTKQLSSIKGIRQPTVRKDGEQIVDIIQRCKESESSQW 299 Query: 288 -DALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKP 346 + LP+P + + FK ++ L+ ++ + E++A ++ + +L + P Sbjct: 300 PERLPRPFNQVAG-----EWFKDMRDLVQKKAKELDVPPEMVARKKSLEGMLRKAYPNGP 354 Query: 347 QNNLPELISGWRGELMAEAL 366 +P + GWR E++A L Sbjct: 355 -IEIPRSLQGWREEVIATPL 373 >UniRef50_D0WEC8 Ribonuclease D n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEC8_9ACTN Length = 399 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 113/373 (30%), Positives = 185/373 (49%), Gaps = 21/373 (5%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 IT L R +A+DTEF+R R Y+ +L LIQL E ++DPL + D SP Sbjct: 5 ITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKVHDLSP 64 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L+ ++ D S+ K HA ++DL++ + +P P+ DTQ+ AA G+ + G+ ++V Sbjct: 65 LRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALLGQTVQVGYGTLVLNE 124 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG---WLPAALDE 182 GV L K++S TDW RPL+ Q YA DV YL I +L EA G WL E Sbjct: 125 CGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRASWLEHDFAE 184 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 L+ R V PE+ WR + N QL RQLAC + +A WR RKA ER++ V+ + Sbjct: 185 --LVDPSRYR-VDPENRWRHLKNVNQLSGRQLACAKHVAAWRERKAMERNIPRKAVLSDV 241 Query: 243 HLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 + + R P S+ ++ + G++ + + +L+ +K P+D P +L P Sbjct: 242 QIVEICRREPRSIDDMFMVRGVASALSTKEARDVLSACKKGLETPDDECP----SLARAP 297 Query: 302 GYRKAFKA----IKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + A + +L+ + + I+ + S ++ ++ H + +L+ GW Sbjct: 298 RGEQNVDAQTALLAALVHQRARENSIAFSAITSNAELARIARGH------TDDCDLLKGW 351 Query: 358 RGELMAEALHNLL 370 R + + + L+ Sbjct: 352 RRAIAGKDVLKLM 364 >UniRef50_A0Z9G7 Ribonuclease D n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z9G7_9GAMM Length = 380 Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 169/321 (52%), Gaps = 16/321 (4%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 +A+DTEF R T+YP++ LIQL L+DPL + D PL+ + R + K LH+ SE Sbjct: 31 VAVDTEFRRRDTFYPEVALIQLAAAGQCWLLDPLTLDDTQPLQKLFRQTDLIKILHSASE 90 Query: 85 DLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPL 144 DLEVF G LP+P+IDTQ AA G + +V + + + K E+++DWL RPL Sbjct: 91 DLEVFERWLGVLPRPMIDTQKAAAMLGLGFGLSYRDLVHDLLSIDVAKDETQSDWLVRPL 150 Query: 145 TERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDIT 204 T+ QC YA DV +L L EASG+L L+E M V Sbjct: 151 TDAQCHYAMQDVTFLAQCWPILEARAEASGYLSWILEESAAM------VTGGRGPLAKFK 204 Query: 205 NAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GL 263 +AW+L ++QLA L L DWR KAR+R+ N+++ ++ + +A+ +P S+ +L + + Sbjct: 205 SAWKLNSQQLAVLLDLIDWRESKARDRNRPRNWILHDKVILDLAKRIPTSMPQLAAADSM 264 Query: 264 SGSEIRFHGKTLLALVEKAQ----TLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSE 319 +R GK L+ L+E A + P +P P + + RK K++ + ++ Sbjct: 265 PAGVVRREGKQLMTLIESASERGLSDPPAPIPAPSNSRV-----RKLAKSLAPAMAALAL 319 Query: 320 THKISAELLASRRQINQLLNW 340 ++ E+L R++ L ++ Sbjct: 320 ELGMNVEILMPSRELEMLASF 340 >UniRef50_A7HYE5 Ribonuclease D n=116 Tax=Alphaproteobacteria RepID=A7HYE5_PARL1 Length = 427 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 116/375 (30%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 ++ITT++AL + C+ + + +DTEF+R T++P L LIQL ++DPL D Sbjct: 45 EIITTNEALRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLD 104 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +P A++++ ++ K HA +D+E+F + +P PL DTQ+ A CG S G+ ++V Sbjct: 105 LAPFYALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGFGDSVGYETLV 164 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPIT---AKLMVETEASGWLPAA 179 + +G ++DKS TDW RPL+++Q +YA ADV YL I AK + T+ + W+ Sbjct: 165 RKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHTKRAHWVA-- 222 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +E ++Q + PE+AW+ + ++ + R LA L +A WR R+A+ERDL + V+ Sbjct: 223 -EEMAVLQDPETYAMRPENAWKRVKARFRGQ-RGLAVLVEVAAWRERQAQERDLPRSRVM 280 Query: 240 REEHLWSVARYMPGSLGELDSL-----GLSGSEIRFHGKTLLALVEKAQTLPEDAL---- 290 +++ L +A +P ++ +LD L G S S +L+ VE+ + E+ + Sbjct: 281 KDDALAEIATQIPRTISDLDGLRAVPKGFSNSR---SAASLMEAVERGLAMKEEDIPVVE 337 Query: 291 -PQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 P+P+ PG + +K L+ E H ++ +L+A+ + +L+ H + Sbjct: 338 GPEPL-----PPGIGPLVELLKVLLKIKCEEHDVAQKLVANVADL-ELIAAHSEADVGA- 390 Query: 350 LPELISGWRGELMAE 364 + GWR EL E Sbjct: 391 ----LKGWRRELFGE 401 >UniRef50_Q0BVP4 Ribonuclease D n=18 Tax=Alphaproteobacteria RepID=Q0BVP4_GRABC Length = 429 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 117/374 (31%), Positives = 194/374 (51%), Gaps = 20/374 (5%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW 63 +IT + LA+LC +R P + +DTEF+R RTY+P+L ++QL + +A+ID L D Sbjct: 48 LITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELDL 107 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +P+ +L DP++ K HA +D+E+FL FG +PQP+ DTQ+ A G G+ ++V Sbjct: 108 APVGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQVGYDTLVS 167 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 +G +DK+ +DW RPL++ Q +YAAADV +L + L E G L +E Sbjct: 168 SLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGRLAWVSEEM 227 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 ++ P W + R R L L+ + WR +A+ ++ ++++E Sbjct: 228 AVLNDPATYRTDPVTMWERLRPRTNNR-RYLGLLRAICAWREVEAQRLNIPRQRLIKDES 286 Query: 244 LWSVARYMPG---SLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A P SL + +G +E R G TLLA + +A+ LP+ L P + Sbjct: 287 LLEIAATSPADAESLAQARGVGRGFAEGR-SGATLLAAIAEARGLPDADL--PAIPRSRE 343 Query: 301 PGYRKA---FKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 G R + +K L+ SE H ++ +LLAS +++L + + ++P L +GW Sbjct: 344 SGARPSPALVSLLKVLLAAKSEQHNVAPKLLASSEDLDRLAT-----EAEPDVPAL-TGW 397 Query: 358 RGELMAE---ALHN 368 R ++ + AL N Sbjct: 398 RRDVFGQDALALKN 411 >UniRef50_UPI0001C31C49 Ribonuclease D n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C49 Length = 396 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 120/377 (31%), Positives = 187/377 (49%), Gaps = 20/377 (5%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-------DGEHLALIDPL 58 ++ DD +A + E RA + +DTEF+ Y L L+Q+ +G +AL DP Sbjct: 9 LSGDDEIARVAELARAAGRLGIDTEFMSEGRYRALLCLVQVAVDDADAPNGVRIALFDPF 68 Query: 59 GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 D++PL A+L DP I LHA +D+ + + + + DTQ+ A F G G+ Sbjct: 69 DKLDFAPLAAVLADPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFAGYGAQTGY 128 Query: 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 +++ G + K+ S T W ARPLTE Q YAA DV +LL ++ L + A G L Sbjct: 129 GNLLGAALGQRVGKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGRLQW 188 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 A +ECR M E PE A+ + + QL R A + +A WR R A++ D V + Sbjct: 189 AQEECRRMDEATDE-RDPETAYERLPRSGQLDPRARAVAREVAAWRERTAQQEDKPVGTI 247 Query: 239 VREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 + + L +A+ P S EL+ + GL G +R G+ ++ VE+ + +P+ Sbjct: 248 LPDPALVEIAKRKPSSPRELEQIRGLHGGHLRRRGQAIVEAVERGRAA------EPIARE 301 Query: 298 MDMPGYRKAFKAIKSLITDVSETHKISA----ELLASRRQINQLLNWHWKLKPQNNLPEL 353 PG + + +L+ V T I A EL+ASR + Q++ + PQ ++ L Sbjct: 302 ARRPGGEQGDAPLIALVEAVIRTRAIEAELAYELVASRADLEQIVIAARRGDPQPSVRAL 361 Query: 354 ISGWRGELMAEALHNLL 370 SGWR EL+ E + LL Sbjct: 362 -SGWRRELVGEEIAELL 377 >UniRef50_Q6AJF4 Related to ribonuclease D n=1 Tax=Desulfotalea psychrophila RepID=Q6AJF4_DESPS Length = 374 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 110/364 (30%), Positives = 166/364 (45%), Gaps = 8/364 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGITDW 63 +I+T + L + A+ LDTEFV RTYYPQLGLIQ+ E IDPL I D Sbjct: 6 IISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSIKDL 65 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 SPL +L D + K LH +DL + G PQ + DT++ A F G + +V Sbjct: 66 SPLGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSISTISLLQLVS 125 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLM---VETEASGWLPAAL 180 E LDKSE+RT+WL RPLTE+Q Y+ DV YL L+ + + WL L Sbjct: 126 EQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLSKIIGPKIKSWLQEEL 185 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 + L +A E ++ + +L + + Q +A WR +KARE + V++ Sbjct: 186 N--LLNNPANYSTIADESRYKKVKGVNKLDRKSIGVAQEIATWREQKARELNRPRGHVIK 243 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 ++ L +A P EL + +S +G + +A E LP Sbjct: 244 DDILLEIAAIRPTRPEELANTAISTKAAERYGNDICQATARALNKKEVDLPHQQKRSQLS 303 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 + A +K LIT + I LL + ++ +++ +K K + GWR E Sbjct: 304 SQEKGALAQLKELITLKCDILGIDPALLGNSNELKKIIQTLYKGKTTHMRQSF--GWRKE 361 Query: 361 LMAE 364 + + Sbjct: 362 FLKD 365 >UniRef50_D2LDG9 Ribonuclease D n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDG9_RHOVA Length = 404 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 112/364 (30%), Positives = 183/364 (50%), Gaps = 15/364 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +IT+ L +LC+A+ P + +DTEF+R TY P+L LIQ+ A++DPL D S Sbjct: 28 VITSITDLKTLCDALAGQPYVTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPLPNLDLS 87 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 P A++ + ++ K HA +D+E+ G +P PL DTQI A G + + ++V++ Sbjct: 88 PFYALMANTAVVKVFHAARQDIEIVWQEAGVIPMPLFDTQIAAMALGHGDAISYGALVKK 147 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 DK+ DW RPL +Q EYA DV YL + AKL E +G P +E Sbjct: 148 LLKKNHDKTYQAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQTGREPWLEEEVA 207 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 ++ + P DAW+ + + RT + ++L A WR R A++ ++ V+++E + Sbjct: 208 VLTDPKTYAFDPADAWKRLKLGGKSRTARSIIMELAA-WRERAAQDENVPRGRVLKDEAI 266 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL---MDMP 301 + VA++ P +L L L +R G +L VE A L D P ++N +D+ Sbjct: 267 YEVAKHAPRTLETLSRLRSVRDSVRSRGDAILRAVEAA--LGRD--PGDVVNAAAHVDLS 322 Query: 302 -GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 G + ++ L+ VS I+ +LLAS + +L + ++P L GWR Sbjct: 323 AGASATVELLRVLLKAVSAELDIAPKLLASAEDLEKLAQYD-----DPDVPAL-KGWRRP 376 Query: 361 LMAE 364 L + Sbjct: 377 LFGD 380 >UniRef50_A1U125 3'-5' exonuclease n=3 Tax=Marinobacter RepID=A1U125_MARAV Length = 383 Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 109/349 (31%), Positives = 169/349 (48%), Gaps = 14/349 (4%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 +ALDTEF R T+YP GL+QL L+DP +A+L D S K L+A SE Sbjct: 39 VALDTEFERVSTFYPIPGLVQLGADGQFWLVDPEVAEAAGSFRAMLADESRPKLLYAMSE 98 Query: 85 DLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPL 144 DLE+F + P ++D QI AA G S G+A +VE G LDKS +R+DW++RPL Sbjct: 99 DLELFRHWLNVEPAGVLDLQIGAALAGAGFSVGYARLVETLFGEALDKSATRSDWVSRPL 158 Query: 145 TERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDIT 204 T Q YA D+ +L P+ ++ A DE R PE + + Sbjct: 159 TPAQERYALDDIRFLEPLYGWVLANLRQRNLEHALADESRRFANEAATQEDPEQHYLKLR 218 Query: 205 NAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGL 263 W L Q A L+ L WR ++ R +D N V+ + L ++A +P S + D G+ Sbjct: 219 GGWTLNREQQAVLRALVAWREQECRRQDRPRNRVLNDGLLIAIAERLPSSAAVIRDVQGV 278 Query: 264 SGSEIRFHGKTLLALVEKAQTLPEDAL---PQPMLNLMDMPGYRKAFKAIKSLITDVSET 320 G ++ +G+ L+ LV+ A+ L P+P+ + +K +K ++ +E Sbjct: 279 PGGFVKRYGEQLVELVQAARATDNSGLELIPRPLSR-----DQQALYKKVKRYFSNAAEC 333 Query: 321 HKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNL 369 I E+LA R++I +L+ L Q GWR +++A ++ Sbjct: 334 FDIPIEILAPRKRIEKLIQ-DGTLAGQT----FFEGWREDIIAPVKQDI 377 >UniRef50_C1ZCS8 Ribonuclease D n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCS8_PLALI Length = 423 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/374 (27%), Positives = 175/374 (46%), Gaps = 6/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M ++T + C+++R + DTEF+ T+ P+L L+QL + L+DP + Sbjct: 1 MTESLMTQQHEFEAFCKSIRQAGIVGFDTEFISEFTWRPELCLLQLATPDRAVLVDPFEV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +P I+ DP + H G E+ + G+ P D QI F GR G+ + Sbjct: 61 RDLAPWWEIMLDPDVVVVAHGGREEARFCVTNTGQAPVNFKDVQIAEGFRGRSFPLGYDA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ G E+R+DW RPLT+ Q YA DV ++LPI AK + + L Sbjct: 121 LVKRVLGHKSHGKETRSDWRRRPLTKSQVHYALEDVQHILPIWAKQSADLKKKNRLAWVE 180 Query: 181 DECRLMQMRRQEVVAPED-AWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 DE ++ R V+ D AW + +L +R+LA + + WR +A RD ++ Sbjct: 181 DE--FTRLVRDVVLERADEAWLKLPGLHKLNSRELAVAKNVFWWREHEAEARDKPARRIL 238 Query: 240 REEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 R++ L +AR P ++ EL + ++ +E R +LA ++ A LPED LP Sbjct: 239 RDDLLIELARRQPANIDELVATRDMNRTEYRKAAAEILAAIDTALALPEDQLPSRPPEPE 298 Query: 299 DMPGYRKAF--KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356 D + + + + + + ++ ++ + L+ WH ++ P L+ G Sbjct: 299 DDQSHDEQLLGQLLGIALANRCAEMNVAMSIVGKTADLRHLVRWHVFGDKRHGTPRLMQG 358 Query: 357 WRGELMAEALHNLL 370 WR E+ + L N+L Sbjct: 359 WRAEVCGDLLSNVL 372 >UniRef50_D2QXT8 3'-5' exonuclease n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QXT8_9PLAN Length = 399 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 108/380 (28%), Positives = 180/380 (47%), Gaps = 19/380 (5%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y+ I++D L C+ + + IA DTEFV +Y P+L LIQ+ +LA+IDPL + Sbjct: 1 MRYEHISSDQHLRDYCQVLASAEIIAFDTEFVSEDSYQPELCLIQVAADGNLAIIDPLEV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SP +L +P +HAG E+ G P D QI A G + + Sbjct: 61 QDLSPFWNLLTEPGRETLVHAGREEFRFCFKGAGRRPHKWFDVQIAAGLIGMEFPASYGT 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + + G +L K E+RTDW RPL++RQ EYA DV L I L+ + E G L Sbjct: 121 LAQRLIGKSLPKDETRTDWRRRPLSQRQLEYALLDVLDLEQIRDVLVGKLEKLGRLSWLD 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E Q + +E E WR + + R LA ++ L WR +A+ R+ ++R Sbjct: 181 TELAAWQDQIEEAETGE-RWRRLGGTAGMNARTLAVVRELWTWRDGEAQRRNSPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP-------Q 292 ++ L +A+ + ++ G+ +I + + A VE+A L +D LP + Sbjct: 240 DDLLLELAKRQTADPKRIRAVRGMERGDILRYMPKITACVERAMALRDDQLPGTERRSAR 299 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK--PQNNL 350 P LNL+ + + + + + ++A L+ + + + L+ + KL + Sbjct: 300 PQLNLLG--------QFLSTALGSICRRSSVAASLVGTAQDVRDLIAYRLKLGGFAPGEV 351 Query: 351 PELISGWRGELMAEALHNLL 370 P L GWR E++ + + +L+ Sbjct: 352 PTLAQGWRAEVVGQVIDDLI 371 >UniRef50_Q2G8P2 Ribonuclease D n=10 Tax=Sphingomonadales RepID=Q2G8P2_NOVAD Length = 405 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 163/302 (53%), Gaps = 23/302 (7%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 + +ITT +ALA LCE + + +DTEF+R TY+P+L L+Q+ D + A IDPL Sbjct: 4 HPLITTTEALADLCERLAKADFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPLAPGL 63 Query: 62 DWSPLKAILRD-PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SPL +L D + K HAG +D+E+ N+ G+ P P+ DTQI + G+++ Sbjct: 64 DMSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKTPHPIFDTQIAMMAVSQSEQIGYSN 123 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASGWLP 177 +VE + G+++DK TDW RPLTERQ EYA DV +L I KL +++T WL Sbjct: 124 LVESWLGLSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGEWL- 182 Query: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQ-----LACLQLLADWRLRKARER 231 + +++ PE+ D+ WQ +R L L+ LA WR R+A ++ Sbjct: 183 ---------DIEMEKLADPENYRTDMDTVWQKIRAPSRNPAVLGRLKSLAAWREREAMDK 233 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL-GLS-GSEIRFHGKTLLALVEKAQTLPEDA 289 ++ ++R+E L +A + P +L + GLS G + G+ L+ + ++ L + Sbjct: 234 NIPKGRIMRDETLADIASHPPREQHDLAKVRGLSAGWKDNDIGRRLMQTLADSKPLTDAE 293 Query: 290 LP 291 +P Sbjct: 294 MP 295 >UniRef50_D0CQ07 Ribonuclease D n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CQ07_9RHOB Length = 424 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 114/373 (30%), Positives = 186/373 (49%), Gaps = 25/373 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF----DGEHLALIDPL- 58 + + T LA C FP + +DTEF+R RTYY +L LIQ+ D + L+DPL Sbjct: 41 KTLKTTQELADFCRLAANFPYVTVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDPLA 100 Query: 59 -GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 G++ PL + ++ + K HA +DLE+F G P+PL DTQ+ A CG G Sbjct: 101 DGLS-LDPLYELFQNEDVVKVFHAARQDLEIFWVEAGIFPKPLFDTQVAAMVCGFGEQVG 159 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 + ++V + LDK+ TDW RPL++ Q YA ADV +L I L E E +G Sbjct: 160 YETLVRKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEKTGRSR 219 Query: 178 AALDECRLMQMRRQEVVAPEDAWRDI---TNAWQLRTRQLACLQLLADWRLRKARERDLA 234 +E R++ + PE+AWR + TN+ + LA ++ LA +R A+E ++ Sbjct: 220 WVAEELRVLTNPETYDIRPEEAWRRVKTRTNSGKF----LAVVRELAKFREGYAQENNIP 275 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTLPEDALPQ 292 N V +++ L +A P + +L L E R +L V++ P D LP+ Sbjct: 276 RNRVFKDDALIELASTKPRTHADLGGSRLLLREARKGPIADGILEAVKRGVNCPPDELPK 335 Query: 293 PMLNLMDMPGYRKAFKA-IKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 + N D A ++ L+ +E+ ++A+L+AS +++++ + ++P Sbjct: 336 -VDNSRDKLKVNPALADLLRVLLKSKTESAGVAAKLIASSAELDRIAAG------ERDVP 388 Query: 352 ELISGWRGELMAE 364 + SGWR E+ E Sbjct: 389 AM-SGWRYEVFGE 400 >UniRef50_C7MN49 Ribonuclease D n=3 Tax=Coriobacteriaceae RepID=C7MN49_CRYCD Length = 399 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 174/359 (48%), Gaps = 31/359 (8%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 +A+DTEF+R +TYY +L L+Q+ + ++DP ++D L + + SI K +H+G + Sbjct: 40 LAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAVSDLGVLAPLFQSSSIMKIVHSGRQ 99 Query: 85 DLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPL 144 DLE+ G LPQPL DTQ+ AA G G+ S+V GV L K +S TDW RPL Sbjct: 100 DLEILNREVGLLPQPLFDTQVAAALLGHTQQIGYGSLVSAVCGVQLAKMDSFTDWSRRPL 159 Query: 145 TERQCEYAAADVWYLLPITAKLMVETEASG---WLP---AALDECRLMQMRRQEVVAPED 198 + Q YAA DV YL + + E E G WL AAL + L V P D Sbjct: 160 SASQISYAADDVIYLPQLYHTMTDELERLGRIHWLDPDFAALIDPALY------VDDPRD 213 Query: 199 AWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 +R + QL RQL+ + +A WR ++AR+RD+ +V+ +E + + ++ L Sbjct: 214 RYRRLKRVGQLSRRQLSAAREVAAWREKRARDRDIPRKWVMTDEQVVEACKREARTIDSL 273 Query: 259 DSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY------RKAFKAIK 311 + GLS +T++ + + L D P+ D Y A+ Sbjct: 274 FMVRGLSDRLSTGDARTVVRCICRGLDLEPDKWPKS-----DHVAYGGDVNVDAVLDAMT 328 Query: 312 SLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLL 370 +L+ + + I+ + LAS + ++ + H E++ GWR E++ L LL Sbjct: 329 ALVRLRARQNNIAFQTLASHSDLVKVAHGHKD-------AEILRGWRREIVGAELLELL 380 >UniRef50_Q7URG3 Ribonuclease D n=1 Tax=Rhodopirellula baltica RepID=Q7URG3_RHOBA Length = 493 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 111/393 (28%), Positives = 184/393 (46%), Gaps = 40/393 (10%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NY I T A CEA+ P I DTEFV Y P+L L+Q+ G+HLA+IDP + Sbjct: 90 VNYDSIETPSQFAEFCEAIADEPVIGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTV 149 Query: 61 TDWSPLKAILRDPSITK-----FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 D P IL D I HA E++ G L DTQ+ A F G Sbjct: 150 GDTKPFWDILTDDQIEPGSRVVIAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFVGIEYP 209 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA--- 172 A++V++ G TL K E+RT+W RPLT+ Q YA DV L + +KL+ + +A Sbjct: 210 ASLATLVQKLVGQTLPKGETRTNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDR 269 Query: 173 SGWLPAALDECRLMQMRRQEVVAPE-DAWRDITNAWQLRTRQLACLQLLADWRLRKARER 231 WL D +++++ + A E + W+ ++ + L+ RQL ++ L WR AR + Sbjct: 270 VSWLDEETD-----RLQKKVIDAEESENWQRVSGSSGLKPRQLEIIRHLWRWREEIARTK 324 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKT---LLALVEKAQTLPED 288 + V+R++ + +A+ GS + G E R + + A + A +P++ Sbjct: 325 NRLPRRVMRDDLMVELAKK--GSPDTKKIRNIRGMERRGYNDQYDEIGAAIAAALDVPDE 382 Query: 289 ALPQ----------PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL 338 LP+ PML+ + + I +S K++ ++ + + +LL Sbjct: 383 HLPRRTRGRSRSASPMLSQF-----------LSTSIACISRQQKLAPAIVGNSDDVKELL 431 Query: 339 NWHWKLKPQNNLPELISGWRGELMAEALHNLLQ 371 ++ + P L+ GWRG+++ A +L+ Sbjct: 432 SYELDPRRGTPTPSLLKGWRGDIVGTAFRKILR 464 >UniRef50_Q31F99 Ribonuclease D n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F99_THICR Length = 385 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 194/384 (50%), Gaps = 34/384 (8%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQL--FDGEHLALIDPL 58 M+Y++I L + CE ++ P IALDTEFVRT TY+ L LIQ+ DG+ A+IDPL Sbjct: 1 MDYKIINQQADLDAFCELLKTCPWIALDTEFVRTDTYFSILSLIQIQTHDGQA-AIIDPL 59 Query: 59 GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 I D + L +I+ +P++ K H+ +D+EV V G++P + DTQI F G Sbjct: 60 AIEDLTALWSIISNPNVRKVFHSARQDIEVLYQVSGQMPISIYDTQIACLFLQHGDLAGL 119 Query: 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE-TEASGWLP 177 A +V+ TL+K ++RT+W RPLT++Q EYA DV YL P+ KL E TE Sbjct: 120 ARVVKAELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLYEKLQAELTEQQQ--- 176 Query: 178 AALDECRLMQMRRQEVVAPEDAWR--------DITNAWQLRTRQLACLQLLADWRLRKAR 229 AAL+E + + ED ++ I A +L + A LA+WR + A Sbjct: 177 AALEE-------DFQALLNEDLYKIDIKAAGKKIKAAKKLSRKNKAIAYKLAEWREQFAI 229 Query: 230 ERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED 288 E + +V+ +E L ++A+ P + L + + S ++ +G + L++ P+D Sbjct: 230 ENNKPKRWVMSDEVLVAIAKRPPKTPEALYKVPHIKASSVKNYGAEWIELIDDVFESPDD 289 Query: 289 ALPQPMLNLMDMPGYRKAFKAIK-SLITDVSETHKISAELLASRRQINQLLNWHWKLKPQ 347 P+P + M + +I +LI ++ + ++ +A++ + LK Sbjct: 290 -WPKPTASSMPATPQDEVLISIGFALIQQITIDYNVNPNNVANKSDL---------LKMI 339 Query: 348 NNLPELISGWRGELMAEALHNLLQ 371 + ++ GWRG L+ + LQ Sbjct: 340 QSDSFMLRGWRGLLLGQPFTQFLQ 363 >UniRef50_B0U173 Ribonuclease D n=18 Tax=Francisella RepID=B0U173_FRAP2 Length = 366 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 182/368 (49%), Gaps = 20/368 (5%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I T+ L ++ E +++ IA+DTEF RTYYP+L L+Q+ + LID L D+S Sbjct: 2 IINTNKQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLEDLDFS 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 LK I D +I K +H+ + D+ + F + DTQ+ A+F G +++++ Sbjct: 62 KLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKALLKD 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 + ++K +DW RPL+++Q +YA DV +L+ I L + + + +E Sbjct: 122 ILDIEMEKESQFSDWRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQTDYKQYFYEE-- 179 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 L+++++ E E+ I N + + L+A WR A+++++ V F+ + L Sbjct: 180 LLEIQKTEFNTVENIHNKIGNIQKFSEKTQKNAILVAQWRESMAQQKNIPVRFIFDNKIL 239 Query: 245 WSVARYMPGSLGELDSLGLSGSE--IRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 +++A P SL D+ L + I+ K+++ ++ Q L +NL G Sbjct: 240 YAIAHKNPKSLNSFDTEELKKLKPWIK---KSIITVINSKQNLEH-------INLEQKSG 289 Query: 303 YRKAFKAIKSLITDV----SETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 K I IT+ + + K A L+ASR+ I + ++ + P + +L+ GWR Sbjct: 290 -AKISTEINDKITNFFDIETRSFKFDASLIASRKDIRSVA-YNLSIDPNYSSNKLLVGWR 347 Query: 359 GELMAEAL 366 E++ + L Sbjct: 348 YEIVGKKL 355 >UniRef50_A6DHN3 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN3_9BACT Length = 372 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 103/353 (29%), Positives = 174/353 (49%), Gaps = 11/353 (3%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP--LKAILRDPSITKFLHAG 82 IALDTEFV T+T++P GL+Q+ + LID L I ++ LK +L + K LH+ Sbjct: 23 IALDTEFVWTKTFHPIPGLLQIKSAGEIHLIDLL-IENFPKEILKELLESRDVCKILHSP 81 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 +DL++F + + DTQ+ AF G P A + E + + K++ +DW R Sbjct: 82 DQDLKLFKLFCDAEAKNIFDTQLAYAFTGAPKQVSLAKLCLEMMDIEISKTQQVSDWTKR 141 Query: 143 PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQ--EVVAPEDAW 200 PL + Q YAA DV YL+ IT L + + +G L+E + + E E A+ Sbjct: 142 PLKDSQLNYAAEDVRYLIEITETLREKLKENGRYDWFLEENKSISENPALYEEAQAETAY 201 Query: 201 RDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS 260 + + +L R L LQ LA +R A +R++ NF+ + L+ A Y+ G+ Sbjct: 202 KKVKQFGRLPLRSLVYLQKLAAYRHEIAFKRNITPNFIFHQSLLFKAAMYLSSDYGQFTR 261 Query: 261 LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSET 320 G + +++ H K L A+ ++ + + ++ LP ML + KA + +V+E Sbjct: 262 NGFNEKQLQKHYKNLQAMAKEVKIIADEDLPNGMLGKEPTGSEKALIKACAQAMDEVAER 321 Query: 321 HKISAELLASRRQINQLLNWHWKLKPQN-NLPELISGWRGELMAEALHNLLQE 372 + L+ +R I +L+ K KP+N N I GWR E++ + ++ + Sbjct: 322 QGLDPGLIYARSHIKRLILKANK-KPENLN----IQGWRKEVLGDTFEKIMNQ 369 >UniRef50_B3Q9Q3 Ribonuclease D n=5 Tax=Bradyrhizobiaceae RepID=B3Q9Q3_RHOPT Length = 392 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 109/369 (29%), Positives = 180/369 (48%), Gaps = 21/369 (5%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITD 62 +I+T + LA C + P I +DTEF+R T+YP L ++Q+ E +ID L GI D Sbjct: 3 LISTSEQLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGI-D 61 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P ++ + + K HA +D+E+ + G +P P+ DTQ+ A G S + +V Sbjct: 62 LKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYGDSIAYDQLV 121 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E +G DK+ TDW RPLT+ Q YA +DV +L + A L + + G +E Sbjct: 122 ERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEE 181 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ V PE AW + + + ++LA L +A WR ++A+ RD+ + V++++ Sbjct: 182 MEVLTSPSTYDVHPERAWERLKTRVR-KPKELAVLMEIAAWREQEAQSRDVPRSRVLKDD 240 Query: 243 HLWSVARYMPGSLGELDSLGL--SGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A + P SL +L +L G + G ++A V++ LP+ +D Sbjct: 241 ALGDIATHAPTSLEKLANLRSLPKGFDRSKWGTEIVAAVQRGLARDMATLPK-----IDK 295 Query: 301 PGYRKAFKAI----KSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356 P AI K L+ SE H ++A+++A+ + Q+ N + G Sbjct: 296 PRNNSNGTAIVELLKVLLRMTSERHAVAAKVIATVDDLEQI------AADDNADVGALRG 349 Query: 357 WRGELMAEA 365 WR EL EA Sbjct: 350 WRRELFGEA 358 >UniRef50_A3ZQI0 Ribonuclease D n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQI0_9PLAN Length = 392 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/379 (26%), Positives = 176/379 (46%), Gaps = 20/379 (5%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MNY+ + + L LC+ +R+ I DTEFV Y P L L+Q+ GE LA++DP I Sbjct: 1 MNYEYVESQSQLTELCDRLRSESHIYFDTEFVSEDVYLPDLCLVQIAAGEILAIVDPKRI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D + ++ +H+G E+ G+ P L DTQI G F + Sbjct: 61 DDMNVFWELIAGGDHVSVVHSGREEFLFCYRATGKAPANLFDTQIAGGLIGMEYPASFGN 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASGWLP 177 ++ L K E+RTDW RPL+ RQ EYA DV YL P +L + + + + WL Sbjct: 121 LILRLLDEKLPKGETRTDWRVRPLSSRQIEYALNDVAYLGPAAQELEKELTKLDRTSWLQ 180 Query: 178 AAL---DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLA 234 + E + +R WR+++ L R LA ++ L WR ++A ++ Sbjct: 181 EEMTSWQEALIESTQRAR-------WRNVSGTGSLSRRSLAIVRELWKWRDKRASAANIP 233 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP-- 291 ++R++ + +A+ +L ++ ++ G+ S++ + + + ++ A L E+ P Sbjct: 234 ARRILRDDLIAELAKRKSSNLKQIRAIRGMQRSDLNRYFEEIADAIQIALELDENDCPSS 293 Query: 292 QPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 QP N G F A + + + K++ L + + + L+ H P+ P Sbjct: 294 QPSWNQGKQYGVLGQFLA--AALGSICREAKVAPSLACTVQDVRDLIAHHMDGAPE--AP 349 Query: 352 ELISGWRGELMAEALHNLL 370 L GWR E++ + + +LL Sbjct: 350 SLAQGWRAEVIGKTIEDLL 368 >UniRef50_D0KY39 Ribonuclease D n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY39_HALNC Length = 374 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 115/371 (30%), Positives = 181/371 (48%), Gaps = 15/371 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++I + AL +C+ + +DTEF+R TY+PQL L+Q+ + + LIDPL + Sbjct: 14 RLIQSTSALHDVCDQIAESTWATIDTEFMRESTYFPQLCLVQIATPDAIWLIDPLAVP-L 72 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL L S HA +DLE+ G LPQ L D+QI AAF G G+A++V Sbjct: 73 APLWHELNRTSSPLVFHAAEQDLELIYLDSGALPQTLRDSQIAAAFLGLGEQIGYANLVN 132 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 V LDKS+SRT+W RPLT Q YAA DV +L + L + L +EC Sbjct: 133 RLLHVELDKSQSRTNWAQRPLTAEQQHYAADDVRFLRSMYPLLREQLATKNRLAWFDEEC 192 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + ++ WR + LR Q A L + WR ARE +L +V+ +E Sbjct: 193 AALSDPQRFQPQMTGLWRKVRGQQALRAAQRAVLDAITTWREAWARELNLPRRWVLSDEQ 252 Query: 244 LWSVA---RYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 +A ++ P L ++ LS ++ L A +E+A+ LP +A PQ Sbjct: 253 ALELAGSRQFRPNLLNPKNARHHLSVEQV----DELRATIERAKQLPPEAFPQWQAYQRT 308 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P +++L+ + S+ +IS LLA+ + +L ++ + L +L +GWR Sbjct: 309 DPETNAILNRMQALVQERSKLMEISPSLLATTDDMLRL------IRAPDALNKLTTGWRC 362 Query: 360 ELMAEALHNLL 370 +++ L +LL Sbjct: 363 DVIGLPLKSLL 373 >UniRef50_A1B391 Ribonuclease D n=14 Tax=Alphaproteobacteria RepID=A1B391_PARDP Length = 401 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 183/386 (47%), Gaps = 37/386 (9%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF---------DGEHLAL 54 + ++T LA CE +A P + LDTEF+R RTYY +L LIQ G L Sbjct: 14 RTLSTTAELAEFCELAKAEPYVTLDTEFLRERTYYSKLCLIQAALPPASATKAAGGLSVL 73 Query: 55 IDPL--GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR 112 IDPL G++ PL + R K HA +DLE+F + G +P PL DTQI A CG Sbjct: 74 IDPLVEGLS-LEPLYDLFRHKPTVKVFHAARQDLEIFFHDAGVMPDPLFDTQIAAMVCGF 132 Query: 113 PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 G+ ++V++ + LDKS TDW RPL++ Q YA ADV +L I L + + Sbjct: 133 GEQVGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSAQLDK 192 Query: 173 SGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQ-----LACLQLLADWRLRK 227 +G P +E ++ + PE+AW ++RTR LA ++ LA +R Sbjct: 193 TGRAPWLAEEVAVLLNPETYITRPEEAWE------RVRTRSGSPRFLAVVRELARFRETY 246 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTL 285 A+ERD+ V +++ L +A P S +L L + R +L+ V KA Sbjct: 247 AQERDIPRARVFKDDALIELASTKPLSEADLAKSRLLLRDARRGEIANGILSAV-KAGVE 305 Query: 286 PEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK 345 D LP+P PG ++ L+ ++ ++ L+AS ++ + + Sbjct: 306 ARD-LPKPAPEEPGRPGNAALADLLRVLLKAKADAAGVAPRLIASASDLDAIASG----- 359 Query: 346 PQNNLPELISGWRGELMAEALHNLLQ 371 +LP L GWR E+ H+ L+ Sbjct: 360 -ARDLPAL-HGWRAEVFG---HDALR 380 >UniRef50_C6XKM8 Ribonuclease D n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XKM8_HIRBI Length = 390 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 104/374 (27%), Positives = 179/374 (47%), Gaps = 16/374 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 +++ D L CE ++ IA+DTEF R T++P+L LIQ E LIDPL D Sbjct: 10 KLVADTDELIKACEELKKGEFIAVDTEFHRESTFWPKLCLIQAATLEFDCLIDPLSPNID 69 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +P ++ D S K HA +D+E+F + G P P+ D+Q+ A CG S + ++V Sbjct: 70 LAPFLDLMADTSRVKVFHAARQDMEIFTKLIGTPPAPIFDSQVAAMACGLGDSVSYENLV 129 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + +DKS TDW RPLTE+Q +YA DV +L KL + E G + +E Sbjct: 130 SQLLKARVDKSSQFTDWQRRPLTEKQLDYARGDVTHLRHCYVKLKAKLEKLGRMGWIEEE 189 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ P++AW+ + + R LA + +++WR + A+E D + +++++ Sbjct: 190 TEILVNPDTYDTNPKNAWKRM-KIRKPRKDYLALIASVSEWREKLAQELDKPRSRILKDD 248 Query: 243 HLWSVARYMPGSLGELDSL-----GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 + +A+ P + ++ L G + S+ HG+TLL + A P+ P+ Sbjct: 249 AVQEIAQQKPIDVNAMERLRAVPKGFAKSK---HGQTLLEAINAAIADPDAYAPEIPKRP 305 Query: 298 MDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + +K L+ VSE ++ L+A+ I ++ ++P + + GW Sbjct: 306 TNTQPPGAVGDLLKVLLKHVSEEADVAPRLIANAADIERI---ACDVEPDV---QAMRGW 359 Query: 358 RGELMAEALHNLLQ 371 R E+ L Q Sbjct: 360 RREVFGNLAIKLKQ 373 >UniRef50_A6C450 Ribonuclease D n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C450_9PLAN Length = 395 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/380 (26%), Positives = 175/380 (46%), Gaps = 18/380 (4%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+ +I +LC+ +R +A DTEFV TY P+L L+Q +DP + Sbjct: 1 MSSPLIVQQSEFIALCDQIRDAGIVAFDTEFVSEFTYRPELSLLQFAVNGQAVAVDPYEM 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SP I+ D +H G E++ + G+ P+ L+D QI R + + Sbjct: 61 DDLSPWWDIMTDDDTVIVVHGGREEVRFCRHFSGKKPRKLVDLQIAEGLRSRSFPISYTA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL---PITAKLMVETEASGWLP 177 +V E+RTDW RPLT++Q +YA DV ++L I K +++ W Sbjct: 121 LVARVLNEKAGSKETRTDWRRRPLTQQQIKYALDDVKFVLKIWKIQEKELIDLGRLDWAE 180 Query: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 A R++ E + WR ++ +L+ R+LA ++ L DWR A+E++ Sbjct: 181 AEFQ--RMIDEVDSEF--HRENWRRVSGLHKLKPRELAIVRELFDWRDEVAQEKNQPARR 236 Query: 238 VVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLN 296 ++R++ L +AR P + +L + L+ + ++ + KAQ P D LPQ Sbjct: 237 ILRDDLLIELARRKPATPQDLTATRDLNRKNMFKLAPEVVQRIAKAQQTPNDQLPQ---- 292 Query: 297 LMDMPGYRKA------FKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNL 350 LM+ P ++ K + + + +S L+ + + L+ +H + + Sbjct: 293 LMENPNTQQNQDEQVIGKLLGIALANRCAEMNVSQTLVGTSADLRHLVRYHVYKEISDER 352 Query: 351 PELISGWRGELMAEALHNLL 370 P L++GWR E+ + L ++L Sbjct: 353 PRLMAGWRAEVCGDLLTDVL 372 >UniRef50_C7M0M9 3'-5' exonuclease n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0M9_ACIFD Length = 396 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 171/355 (48%), Gaps = 20/355 (5%) Query: 21 AFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLH 80 P IA+DTEF R RTYYP+L L+Q+ + LIDPL + D SP+ A + H Sbjct: 39 GVPRIAIDTEFHRERTYYPRLALVQVAIDRRVWLIDPLRV-DLSPIAAWF--DEVELVFH 95 Query: 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWL 140 A +DLE+ G P+ + DTQ+ F G + ++++ Y GV++ K+E +DWL Sbjct: 96 AADQDLEIIERAVGARPRRIFDTQVAGGFLGAGHA-SLGALLDRYLGVSISKAERTSDWL 154 Query: 141 ARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE-CRLMQMRRQEVVAPEDA 199 RPL Q YAA DV YL + +L+ E A G A E RL++ RR++ + PE A Sbjct: 155 RRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEMARLVERRRRD-IEPELA 213 Query: 200 WRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELD 259 W I L +A WR R A+ D+ V V+ + + SVA+ P SL EL Sbjct: 214 WTRIRECRGLDPTGRRIAASVAAWRERTAQRDDVPVRTVLSDLAVASVAKARPSSLTELR 273 Query: 260 SL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM---PGYRKAFKAIKSLIT 315 S+ G G + + LL +V A+ +DA+ MD P ++L+ Sbjct: 274 SVRGFDGRMAKERARELLEVVRAARD--DDAIVARGAVRMDRALDPHEVPLVLTAQALVH 331 Query: 316 DVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLL 370 V+ ++ LL SR ++ ++ L+ GWR +++ + +L Sbjct: 332 AVALELELEPSLLGSREEVELFVS--------RGEGSLLEGWRYDVVGRGIQAIL 378 >UniRef50_Q5GT27 Ribonuclease D n=10 Tax=Wolbachia RepID=Q5GT27_WOLTR Length = 399 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 100/377 (26%), Positives = 186/377 (49%), Gaps = 25/377 (6%) Query: 5 MITTDDALASLCEAVRAFP--AIALDTEFVRTR-TYYPQLGLIQLFDGEHLALIDPLG-I 60 +I T L +CE + A IA DTEF+R TYYP+L LIQ+ GE ++D L Sbjct: 2 LINTTSELEDICEELIAKKPKFIAADTEFIRNHLTYYPRLSLIQISYGEKSFIVDALAPE 61 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW-GFA 119 D S +K I+ + ITK H+ +D+E VF +P P+ DTQ+ A FC + G++ Sbjct: 62 VDLSFIKKIMLNREITKVFHSCRQDIESLFTVFKCIPAPIFDTQVAAMFCHYYHDFIGYS 121 Query: 120 SMVEEYSGVTLDKSESR-TDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 +VE+Y GV LDK +++ +DWL RPL++ Q +YA +DV +L + L E SG + Sbjct: 122 KVVEQYQGVVLDKIKAKNSDWLRRPLSKDQLDYAISDVVHLYDLHQILCDRLEESGRMGW 181 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 +E + + + +P+DAW+ I ++ + + ++ +++W+ A+ ++ N + Sbjct: 182 FHEEMESVVDINKYLHSPKDAWKRIKFNYEANPKLMIIIKAVSEWQETLAQRYNINRNKI 241 Query: 239 VREEHLWSVARYMPGSLGELDSL--GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ--PM 294 V VA + ++ +D + L + + LL ++ ++ + Q + Sbjct: 242 VNNA---VVAGFFEKNVEHVDEVLDDLRKNTKNIREEDLLEFIDVFNENEKNFVQQDYTL 298 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 N D R F + ++ + + IS +L++S+ ++ ++ + +L Sbjct: 299 SNSYD----RSVFDMLSIILESKCKENNISRKLVSSKDELVGSMSGQ--------VDKLF 346 Query: 355 SGWRGELMAEALHNLLQ 371 GWR + ++ + L Sbjct: 347 KGWRYDFFGRSVKSFLN 363 >UniRef50_C8PX51 3'-5' exonuclease n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PX51_9GAMM Length = 403 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/375 (30%), Positives = 184/375 (49%), Gaps = 29/375 (7%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI---TD 62 + T DAL +L + + IALDTEF++ T++P L LIQ+ G+ + LID + Sbjct: 23 VKTQDALFALLDDLEQVDTIALDTEFIKRDTFFPILALIQINTGKAIYLIDAPKLYLEEF 82 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELP--QPLIDTQILAAFCGRPMSWGFAS 120 W L I P++ LHA EDL ++ + LP + + DTQI F S G+ Sbjct: 83 WEVLADI---PTVV--LHACGEDLGIYY-LLSNLPALRNVFDTQIGLGFLTGENSLGYQK 136 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E V +DK ES++DWL RPLT Q YA DV YLLP+ + + G A+ Sbjct: 137 SLQETIAVHVDKGESQSDWLQRPLTPEQESYAVDDVRYLLPMFVAIKTQLIEQGLWQYAV 196 Query: 181 DECRLMQMRRQEVVA----PEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 ++C Q QE+ A P++A ++ QLA LQ L +WR + A+ + Sbjct: 197 EDC---QSYTQEIFANFTTPDNALYLSVADYRDNREQLAMLQTLCEWREQLAKSINRPRT 253 Query: 237 FVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLN 296 F++R + L + P S+ +L + + IR +G+ +L L++K + + A P Sbjct: 254 FILRPQALREIIEKPPFSMKQLSFTSIKPNVIRMYGQEILTLIDKVRKEDDAAYPA---- 309 Query: 297 LMDMPGYRK----AFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPE 352 L+ +P YR K + I +T I +L ++ +++L + + + L Sbjct: 310 LLPLP-YRSLSSDVQKQLDKAIKQHGQTLSIDETVLMRKKWLSELYAYAVAAE-KPALSP 367 Query: 353 LISGWRGE-LMAEAL 366 +SGWR +MAE L Sbjct: 368 WLSGWRKAWIMAEIL 382 >UniRef50_B3E3R4 3'-5' exonuclease n=1 Tax=Geobacter lovleyi SZ RepID=B3E3R4_GEOLS Length = 381 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 3/331 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Y +I + L LC + +ALD E Y ++ L+QL + L+DPL + Sbjct: 4 LRYTVIEHNHQLEQLCAELTDETELALDLEADSMHHYREKVCLLQLSNRAGTWLVDPLRL 63 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +D SPL+ +L P + LH G D+ FG + Q + DT + A F G +G A+ Sbjct: 64 SDLSPLRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMFDTMVAAQFTG-ATEFGLAA 122 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++ E+ G+ LDK + DW RPLT +YAA D +LL + +L E G Sbjct: 123 LLREHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLELADRLHARLEQLGRREWVA 182 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC L+ R + + A +L+ R LA L+ L +R ++ARE D V+ Sbjct: 183 EECALLVGNRVAEKGNGPLFLNCKGAGKLKPRNLAILEALLQFRDQQAREADRPAFKVIP 242 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ-PMLNLM 298 E L +A +P ++ +++ + GL+ + +G+ LL +V + + E LP+ P Sbjct: 243 AEALLKIAELVPAAVRDMNGIAGLTPRLLGRYGEQLLTVVRQGLAVAEADLPRFPRGRGE 302 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLA 329 PG + +K +S +++ LLA Sbjct: 303 PNPGIKARITRLKQWREGISSRMGLASGLLA 333 >UniRef50_A8GWM0 Ribonuclease D n=16 Tax=Proteobacteria RepID=A8GWM0_RICB8 Length = 286 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 133/270 (49%), Gaps = 9/270 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q+I + L C + +++DTEF R TYY +L +IQ+ +ID + D Sbjct: 2 QIINSQKVLEEFCRELSTKKWLSIDTEFERRYTYYAKLSIIQVKAEGCSIIIDAINNLDL 61 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + +L D +I K HA ED E+F N+F LP + D Q+ A CG + + Sbjct: 62 NVFNKLLIDNNIIKIFHAPREDFEIFYNLFKTLPSNIFDVQVAANVCGLGSQLSYDDICY 121 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA---KLMVETEASGWLPAAL 180 + + +DK+ +++WL RP+TE YA DV YL I K++++ + + L Sbjct: 122 KLFKINIDKTHQKSNWLKRPITEDMLNYAFLDVEYLDKIYKQLNKIILDNNLTNQYQSML 181 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLAC-LQLLADWRLRKARERDLAVNFVV 239 L ++ E V PEDAW+ + ++++ + +Q+LA +R KA+ ++ + Sbjct: 182 Q--FLFNIKNYE-VKPEDAWKKV--KFRIKIKDFNTKIQMLAAYREEKAQTINIPRKHFI 236 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIR 269 +E L + +Y+P + + +L L ++ Sbjct: 237 SDEDLMKLCKYLPLTEQDFKNLNLKSRHLQ 266 >UniRef50_A5WG76 3'-5' exonuclease n=3 Tax=Psychrobacter RepID=A5WG76_PSYWF Length = 431 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 179/375 (47%), Gaps = 18/375 (4%) Query: 10 DALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAI 69 DAL + + + +ALDTEF++ TY+P L L+Q+ G+ + LID + D + + Sbjct: 54 DALEACLDDLETCDRVALDTEFIKRNTYFPILALVQINTGKAIYLIDAPKL-DLTEFWVV 112 Query: 70 LRDPSITKFLHAGSEDLEVFLNVFGELP--QPLIDTQILAAFCGRPMSWGFASMVEEYSG 127 L + + HA EDL +F + E P + DTQI ++ + G+ + + Sbjct: 113 LEEMPLM-IWHACGEDLGIFY-LLSESPALTNVFDTQIALSYLTGQLQMGYQQALSQELD 170 Query: 128 VTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQ 187 V ++K+ES++DWLARPL+ Q YA DV YLL + L + G +++C+L Sbjct: 171 VHVEKAESQSDWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVEDCQLYA 230 Query: 188 MRRQEVVAPEDAWRDITNA-WQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWS 246 E ED + A ++ QLA LQ ++ WR AR + FV++++ + Sbjct: 231 KELYESANIEDDATYLAMADFRYTPEQLAVLQAVSSWREALARATNQPKTFVLKKQAVRD 290 Query: 247 VARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTL-PEDALPQPMLNLMDMPGYR 304 + MP S+ +L + S +R +G L+ ++ +A+ L PE+ P+ P YR Sbjct: 291 LVVEMPTSIKQLTQKTTMHRSIVRLYGDELIQVINQAKALSPEEQPPRI------FPPYR 344 Query: 305 ----KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 KA+ +I E + A +L ++ ++ L P LPE + GWR E Sbjct: 345 SKDKSVSKAVDQVIKQYEEQTGVPANVLMRKKWLSSLYEIVAYDLPLEQLPEGLKGWRNE 404 Query: 361 LMAEALHNLLQEYPQ 375 + L L+ + + Sbjct: 405 WVMSTLIPLITSHKE 419 >UniRef50_A1UT53 Ribonuclease D n=5 Tax=Bartonella RepID=A1UT53_BARBK Length = 391 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 104/372 (27%), Positives = 173/372 (46%), Gaps = 11/372 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL-GITD 62 ++IT L +R + +DTEF+R T++PQL LIQL ALIDP+ D Sbjct: 2 ELITKTKDLEIAIATLRNSDFVTVDTEFIRETTFWPQLCLIQLASPNSTALIDPMVPDID 61 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P ++ D +I K HA +D+E+ ++ +P PL DTQI A CG S + +V Sbjct: 62 LQPFFDLMIDKNIVKVFHAARQDIEIIYHLGRIIPFPLFDTQIAGAICGFGDSISYDQIV 121 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 +G LDKS TDW RPL+E+Q YA ADV YL + L + E S E Sbjct: 122 YHCTGQHLDKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKRFHWMDGE 181 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ + ++AW+ + + + + A LQ +A WR +AR+ ++ ++++E Sbjct: 182 MAILSTPTTYDIPEDEAWKKVKGRVK-KPCEFAILQKIAAWREHEARKYNVPRRHIIKDE 240 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHGKT--LLALVEKAQTLPEDALPQ-PMLNLMD 299 L +A P L L T L+ +V ++ + LP P N +D Sbjct: 241 CLIEIAIQKPKDEYALKCLRNINKSWHHPSMTQALIKIVHESLEVDTSTLPALPKYNPID 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 A +K L+ V+ + I+ ++A+ + ++ N+P + +GWR Sbjct: 301 -DKTAAAIDLLKVLLKLVANKNNIAPTIIATSNDLEKIATRTM----TQNIPTM-NGWRY 354 Query: 360 ELMAEALHNLLQ 371 E+ + +L+ Sbjct: 355 EIFGKKAEQMLK 366 >UniRef50_Q3BSC1 Ribonuclease D n=20 Tax=Xanthomonadaceae RepID=Q3BSC1_XANC5 Length = 363 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 163/355 (45%), Gaps = 24/355 (6%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 I LDTEF+R RTY+PQL L+Q+ G+ + LIDPL + LK L P I K +H+ SE Sbjct: 23 IGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGMNAALKEWLTAPDIVKVMHSASE 82 Query: 85 DLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPL 144 DL F G LP+PL DTQI AA G G+ +V+E +G L K E+R+DW+ RPL Sbjct: 83 DLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQKLVQEVTGTLLTKGETRSDWMRRPL 142 Query: 145 TERQCEYAAADVWYLLPITAKLMVETEASG---WLPAALDECRLMQMRRQEVVAPEDAWR 201 + Q EYAA DV YL I L G WL A D RL+ V +D R Sbjct: 143 SPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWL--AEDAERLL-----ATVEHDDGER 195 Query: 202 ----DITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGE 257 + A L L L WR +AR+ D ++++ E +AR+ P + Sbjct: 196 WPHVSLRAAQFLEPAAQRRLLRLLRWRDLQARQSDRPRSWILDNELASQLARFPP---AD 252 Query: 258 LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDV 317 L++L + + L V A +P L G + K ++ + Sbjct: 253 LEALLRQFDKFPKAPRKLANAVWDALNIPLPDEEHAPLAQAATDGNKAVLKRLQDAVAQR 312 Query: 318 SETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQE 372 S + LLASRR + L+ Q + P + WR L+ L LL + Sbjct: 313 SRELGLPDGLLASRRHLETLME-------QRSWPAALGQWRRALLESQLMPLLDD 360 >UniRef50_UPI00016C3C86 ribonuclease D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3C86 Length = 435 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 102/368 (27%), Positives = 161/368 (43%), Gaps = 6/368 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q++T LA+ + P + DTEFV Y P+L L+Q+ E L +IDP Sbjct: 14 QLVTHPAQLAACLSHLAKAPLVGFDTEFVGEDAYRPELCLVQVSTAEQLFVIDPFECGSL 73 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +L D T +HAG ED+ + G P + D QI A G G+A +V Sbjct: 74 DGFWDLLLDRKRTVVVHAGREDVRMCYFQAGSAPPNVFDVQIAAGLVGLTYPIGYAGLVH 133 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + K E+ TDW RPLT Q YA DV YLLP KL + LP A +E Sbjct: 134 DLLRQRMQKGETLTDWRQRPLTPAQVRYAYDDVRYLLPAHRKLTERLKKYRRLPWAEEEF 193 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 R A + WR I L R LA + + WR + A + F++R++ Sbjct: 194 AAAVKRAVADDATIERWRKIKGIGALDRRGLAVAREVYGWRDKFAERLNKPPRFLMRDDL 253 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +AR P EL ++ GL R + +L + +A+ L P+P D Sbjct: 254 LIEIARRAPTRPEELHTVRGLP----RGQEEPILEAIRRAKALELGECPEPETRDNDSAN 309 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 + ++ D + ++++A L++S + ++ + ++P L GWR + + Sbjct: 310 VVLLGNLLNVVLADFAGRNRLAANLISSGADLKAVVRSRVEGTDLPDVP-LCRGWRAKAV 368 Query: 363 AEALHNLL 370 L ++L Sbjct: 369 LPELLDIL 376 >UniRef50_Q6FA19 Ribonuclease D, processes tRNA n=19 Tax=Acinetobacter RepID=Q6FA19_ACIAD Length = 398 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/380 (25%), Positives = 179/380 (47%), Gaps = 24/380 (6%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-- 60 +Q I D LA + + LDTEF++ T +P+LG+ Q+ + L+D + Sbjct: 20 FQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALDL 79 Query: 61 -TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE-LPQPLIDTQILAAFCGRPMSWGF 118 W L A S HA ED+++ + + + + DTQ+ +F G + + Sbjct: 80 SIFWQKLYA-----SKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSY 134 Query: 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 + ++ + ++K ++R+DWLARPL++ Q +YAA DV YLL ++ ++ + + Sbjct: 135 QAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDY 194 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 L++CR + + D+ N R RQL LQ L WR + + + +F+ Sbjct: 195 VLEDCRHLTQEIGTDTPQHLLYTDVGNYRHSR-RQLMQLQQLMVWREQLIKAINQPRSFI 253 Query: 239 VREEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDA-----LPQ 292 +R + + P + +L + + + IR HGKT+L L++ LPE+ + + Sbjct: 254 LRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLK---FLPEEHEWPLRMAK 310 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPE 352 P+ + + + LI V E +I E+L ++ +N L + ++ LPE Sbjct: 311 PIRH-----SSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPE 365 Query: 353 LISGWRGELMAEALHNLLQE 372 + GWR E++ L +L++ Sbjct: 366 YLLGWRYEMLTRPLIQILKQ 385 >UniRef50_A9A075 3'-5' exonuclease n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A075_DESOH Length = 382 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/290 (30%), Positives = 134/290 (46%), Gaps = 2/290 (0%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + T LA + + P +A+D E + ++ LIQ+ LIDPL ++D Sbjct: 9 FTFVNTPSGLAQVVHRLERVPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLALSD 68 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S LK DP + K LH D+ FG L D++I + F G S G +V Sbjct: 69 LSSLKPFFADPGVIKVLHGADYDVRSLYRDFGITITGLFDSEIASRFLG-VQSTGLNDVV 127 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 GVT+DK + DW RPL E+ YAA DV YL+ + +L E + G +E Sbjct: 128 NRRFGVTMDKGCRKQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAEE 187 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 C L+ R + A +L R LA L+ L R + AR++D V+ + Sbjct: 188 CELLSRVRYANGEDTPLFVRFKGAGRLSRRTLAVLEALLVARQKMARKKDRPPFKVMGND 247 Query: 243 HLWSVARYMPGSLGELDSLGL-SGSEIRFHGKTLLALVEKAQTLPEDALP 291 L +A+ P + L+++G+ S ++ +LA VE+A LP+ LP Sbjct: 248 ALLRLAQERPRNRKALEAMGVFSKKQLPMVADGVLAAVERAMVLPDSQLP 297 >UniRef50_A5G9G2 3'-5' exonuclease n=8 Tax=Desulfuromonadales RepID=A5G9G2_GEOUR Length = 409 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/297 (29%), Positives = 138/297 (46%), Gaps = 7/297 (2%) Query: 2 NYQMITTD-----DALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALID 56 YQ +TD AL L E + +A D E Y ++ LIQ+ ALID Sbjct: 30 KYQQESTDIIEDQQALNRLVERLNTETTLAFDLEADSLHHYTEKVCLIQVSTNSETALID 89 Query: 57 PLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 PL D SPL IL +P++ K H D+ FG + L DT I + F G Sbjct: 90 PLAPLDLSPLAPILANPAVRKVFHGADYDMRSLYRDFGFEVRNLFDTMIASQFLGE-KEV 148 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 G A+ +++ GV LDK + DW RP + + EYA D L+ + +L E A G L Sbjct: 149 GLAAALKKRFGVELDKKYQKADWSKRPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGRL 208 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 +E ++ R E + A +L+ R LA L+ L +R +AR+RD+ Sbjct: 209 AWVEEESEIVSCVRAASRDNEPLFLRFKGAAKLKPRSLAVLEKLLLFRDERARKRDVPPF 268 Query: 237 FVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ 292 ++ E L +A +P + +L + G+S I +G+ +L +V + ++P + LP Sbjct: 269 RILGNEPLRELAELLPRTAADLTGIPGISQKLIDTYGREILNVVAQGLSIPAEKLPH 325 >UniRef50_C0QAP2 Rnd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAP2_DESAH Length = 377 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/340 (27%), Positives = 154/340 (45%), Gaps = 4/340 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Y +I D+ LA+ C+ ++ +A D E + ++ L+Q+ D ++DPL I Sbjct: 2 IEYTLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLSI 61 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S LK + DP+ITK H D+ F L DT+I F G A+ Sbjct: 62 DDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFLG-IQKRSLAA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E++ +TLDK +TDW RPL++ Y+ DV YLL ++ L E G L A Sbjct: 121 LLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEGRLAWAE 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E L R + E + + ++ R LA L+ L +R A E+D + ++ Sbjct: 181 EEFELQTRVRHDNNGNEPLFLKFKGSGKMGRRSLAVLESLLQFRKTLAVEKDKPLFKIIS 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP-QPMLNLM 298 E + +A P +L L L LS ++ +G +A + A PE LP P L Sbjct: 241 SEAIAKMAANQPETLHSLKELRALSPRQMDMYGTQCVAAIVGALKTPEKELPVYPRKRLP 300 Query: 299 DM-PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQL 337 +M P + +++K + S +I L + I + Sbjct: 301 EMAPQVPERIRSLKEMRITASNKTRIEPGFLLNNTMITAI 340 >UniRef50_Q3A7R1 RNase D n=2 Tax=Desulfuromonadales RepID=Q3A7R1_PELCD Length = 375 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 135/291 (46%), Gaps = 9/291 (3%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 ++ D ++A L + +R IA+D E +Y ++ L+Q+ L+DPL + D + Sbjct: 6 ILVDDVSIARLAQELRDEAVIAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLAVEDLA 65 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L +L DP+I K HA D+ F Q L DT I G G A ++ + Sbjct: 66 ALAPVLADPTIRKIFHAADYDIRCLFRDFRIEVQGLFDTMIACQMLGEK-RVGLADVLAK 124 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y V LDK R DW RPL E YA D +L +T L G L A +E Sbjct: 125 YLDVELDKRYQRADWSKRPLEEGMILYAMEDTCHLHRLTEILEGRLRDMGRLSWAEEEFA 184 Query: 185 LMQ-MRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 L+Q +R E P + + A L +QLA L+ L WR +A RD VV + Sbjct: 185 LLQKVRHSENNGP--LFMRVKGAGLLERKQLAVLEQLLQWRDEEACRRDRPAFKVVGNKT 242 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRF---HGKTLLALVEKAQTLPEDALP 291 L +A+ MPGSL E + G+ G R +G+ L+ +V KA +P + P Sbjct: 243 LLGLAQIMPGSLRE--AKGIEGFSPRLADRYGRALIGVVCKAAAIPREEWP 291 >UniRef50_C8NCR6 Ribonuclease D n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCR6_9GAMM Length = 401 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 165/350 (47%), Gaps = 22/350 (6%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPL-GITDWSPLKAILRDPSITKFLHAG 82 + D+EFVR R+Y P+L L+Q G L DPL G W+P IL P+ +HA Sbjct: 70 LCYDSEFVRERSYIPKLALVQTCQPGGTAQLYDPLEGDIPWAP---ILHHPAPL-VMHAA 125 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 ++DLE+ LP + DTQ A C ++ +A++VE Y G+ DKS++R+DWLAR Sbjct: 126 AQDLELMQLCGDALPATIRDTQTGFALCSPHLAVSYAALVEHYLGIAPDKSQTRSDWLAR 185 Query: 143 PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWR- 201 PL Q +YAA DV L + L+ + + G L +E R+Q+ DAW Sbjct: 186 PLNAAQLDYAADDVGLLARLYPLLVADLQRLGRLAWWAEESATQLARQQQT---RDAWHW 242 Query: 202 -DITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS 260 + A QLR Q+L + R R A DL ++ + + ++A+ P S+ E + Sbjct: 243 YRLQGAPQLRHDDKPVAQILVEARERLAAAHDLPRRAILSDRQIITIAQKRP-SVPENLA 301 Query: 261 LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSET 320 L+ + + LA T P P L+ P R+ ++ + + I D + Sbjct: 302 EYLAPDHLLWQELPYLAQRFSDNTPPPAPPASPRLS----PAKRQHYEQLCAYIADTAAA 357 Query: 321 HKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLL 370 I ++LA R + ++ KP P L++GWR E L LL Sbjct: 358 LNIHPDMLAPTRVLK-----NYVAKPDPTSP-LLTGWRAAFFREPLGKLL 401 >UniRef50_C1AC33 Putative ribonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AC33_GEMAT Length = 388 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 110/375 (29%), Positives = 171/375 (45%), Gaps = 18/375 (4%) Query: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPL 66 T D LA L VRA IALDTE + ++ L+QL +H A+IDPL I + L Sbjct: 14 TVDTFLAGL-NGVRA---IALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIGTPTRL 69 Query: 67 KAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYS 126 +L DP + LH DL + +G L DT++ A G ++G A+++E++ Sbjct: 70 GVLLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLG-IRAFGLAALLEQFF 128 Query: 127 GVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 G+ LDK R DW RPLT +YAA D +LL + +L E G A +E Sbjct: 129 GIKLDKKHQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWAQEEFTRA 188 Query: 187 QMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWS 246 + R E AP+ ++ + A L R+LA L+ L WR A E D A V E L Sbjct: 189 EGTRWEPEAPDTSFLRLKGARDLNRRELARLRELVRWRDGIAAELDRATFRVAGNEVLLD 248 Query: 247 VARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ-PMLNLMDM-PGY 303 +AR P + L ++ G + L + + +P+ LP+ P D P + Sbjct: 249 LARQAPATRDALFAVKGFPRGMSESRAQEALQSIVRGNAVPDAELPRFPKATRWDREPDF 308 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN-----NLPELISGWR 358 + +K++ + + +L SR ++ ++ + KP++ LPEL W+ Sbjct: 309 DERVARLKTVRDAAATDLNLDPGVLCSRDRMEAVV----RRKPRHVDDLAELPEL-RRWQ 363 Query: 359 GELMAEALHNLLQEY 373 E++ A L Y Sbjct: 364 VEVLGPAFVKALASY 378 >UniRef50_Q0BZZ0 Ribonuclease D n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZZ0_HYPNA Length = 388 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 102/347 (29%), Positives = 163/347 (46%), Gaps = 28/347 (8%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWS 64 IT AL LC A+ + +DTEF R TY+P+L LIQ LIDP D Sbjct: 9 ITEQSALEDLCGALSESDFVCVDTEFHRETTYWPELCLIQASAPGVEGLIDPRAEDLDIR 68 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 P ++ K HA +D+E+F + G P P+ DTQ+ A G S + ++++ Sbjct: 69 PFLDLIASDRQLKVFHAARQDIEIFNRLIGHPPGPIFDTQVAAMALGFGDSISYDNLIQR 128 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 +DKS TDW+ RPL+++Q YA DV +L K+ E E +G Sbjct: 129 VLRKHIDKSSQFTDWMRRPLSQKQLVYALGDVTHLRDAYLKMRDELEKAGR--------- 179 Query: 185 LMQMRRQEVVAPEDAW---RDITNAWQ-LRTRQ-----LACLQLLADWRLRKARERDLAV 235 M R+E+ ED D NAWQ L+ R A + +A WR R A+E D Sbjct: 180 -MNWVREEMAELEDPATYDTDPMNAWQRLKLRMPKKDYAAIVVAVAAWRERTAQELDKPR 238 Query: 236 NFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRF-HGKTLLALVEKAQTLPEDALPQ- 292 +++++ + +A P S + + L + IR HG+ L+ +++A P+ P+ Sbjct: 239 RRILKDDAIQEIAAQKPRSEEDFNQLRAVPNGFIRSKHGQGLVDAIKEALANPDAFAPEL 298 Query: 293 --PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQL 337 P+ N G A + +K L+ VS+ + + L+A+ I+++ Sbjct: 299 TRPVQNAQIPAG---APELLKVLLKHVSDENNVVPRLIANSSDIDRI 342 >UniRef50_D0LT15 Ribonuclease D n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LT15_HALO1 Length = 400 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 163/347 (46%), Gaps = 12/347 (3%) Query: 27 LDTEFVRTRTYYPQLGLIQLFDGE----HLALIDPLGITDWSPLKAILRDPSITKFLHAG 82 D EF + +L L+Q+ G+ +ALID + + D +P+ ++ DP++ HA Sbjct: 32 FDFEFASDGRFLAELALVQVSWGDPEAPEIALIDSVAV-DPTPVLRLIGDPAVVSVAHAA 90 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 +DL + F + DTQI AAF G G+ +V+ GV LDK+ T WL R Sbjct: 91 KQDLGILAARFDIFAENFWDTQIAAAFVGMAEQIGYGKLVDALLGVQLDKASQFTKWLER 150 Query: 143 PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRD 202 PL+ Q YAA DV YL + A L + G +E L+ E A+ Sbjct: 151 PLSPAQLRYAADDVRYLPRVWAHLSQRLDELGRRAWVGEESALLARDAMPYGPAELAYHS 210 Query: 203 ITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSL 261 + A LR + L L LA WR +A +L +++V+ ++ L ++R G++ ++ Sbjct: 211 LKGAGALRGKALGRLAALAAWRQERALADNLPLSWVLPDKALLELSRRGARGPGDVRNAP 270 Query: 262 GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETH 321 G++G+ R + +++ ++ A P A P +L D G R + +++ + Sbjct: 271 GVTGTIARRYADAIVSALQGAGKPPAGAPPSRGPSLDD--GARLRVPVVMAMLQTRAAEA 328 Query: 322 KISAELLASRRQINQLLNWHWKLKPQ---NNLPELISGWRGELMAEA 365 I+A A+R L+ WH + + +P L+ GWR +L +A Sbjct: 329 GIAARFAATRADAESLVAWHAAGGDEGERDGVP-LLEGWRRDLFGDA 374 >UniRef50_C9RLF5 3'-5' exonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLF5_FIBSS Length = 386 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/339 (27%), Positives = 152/339 (44%), Gaps = 10/339 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y ++ ++++LA+L + + A+DTE Y +L LIQ+ GEH ++DPL Sbjct: 6 KYILVDSEESLANLLADLELYDMAAVDTEADSMYHYTARLCLIQITIGEHHYIVDPLCGL 65 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D +PL T H DL + +G P+ + DT + A G G A + Sbjct: 66 DLAPL--FKARAMQTLIFHGADYDLRLLWQTYGFSPKSIFDTMLAAKILGE-QHLGLADL 122 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V+EY G L K R DW RPL+ CEYA D +YL + A L + + +G + + Sbjct: 123 VKEYFGDELKKENQRADWTIRPLSLDMCEYAIHDTFYLHELCAILAEKLQQAGRMNWLTE 182 Query: 182 ECR-LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +C L++ R +D WR IT + L L+ L +WR ++A E D V++ Sbjct: 183 QCNTLIEHARTPNAPKKDPWR-ITGSSIYSPCALNILKHLWEWREKQAEELDRPPYKVMQ 241 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTL---LALVEKAQTLPEDALPQPM--L 295 E + ++ E+ L F G L L ++ A +PE P + Sbjct: 242 SELMLAIVNAQNSHFPEVSETFLPKLPRNFKGDRLDSFLNMLRTAVAVPECDWPMRLPKA 301 Query: 296 NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQI 334 + + A+K+ + +E KI A LLA++ Q+ Sbjct: 302 PPPPVIPHSDLLNALKTWRDEKAEELKIDAALLANKSQL 340 >UniRef50_Q6SGG6 Ribonuclease D, putative n=4 Tax=Bacteria RepID=Q6SGG6_9BACT Length = 358 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 88/182 (48%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I T L + + ++A+DTEF R TYYP+L L+Q+ + ID L I D Sbjct: 14 LIQTRPQLERYLKTINNDSSLAIDTEFKRINTYYPELCLVQIATTQFAECIDVLSINDLE 73 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL L +H+ +D+E ++ +P L DTQI A+ P+ + ++ E Sbjct: 74 PLFEKLYHNKTEWIVHSARQDIEALYHLSKRIPVSLFDTQIAASLLNYPLQISYQALTEI 133 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 V LDKS +R DW RPL EYA DV YLLP KL E S + +E R Sbjct: 134 LQDVLLDKSYTRFDWTTRPLPANVVEYALDDVRYLLPNFEKLKHELTISKKIQWLDEETR 193 Query: 185 LM 186 + Sbjct: 194 FL 195 >UniRef50_A5EXN2 Ribonuclease D n=2 Tax=Dichelobacter nodosus RepID=A5EXN2_DICNV Length = 355 Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 105/349 (30%), Positives = 157/349 (44%), Gaps = 28/349 (8%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDG--EHLALID---PLGITDWSPLKAILRDPSITKFL 79 + D+EFVR R YYP+L L+Q+ + LID L + W L A R P + + Sbjct: 22 VVYDSEFVRERHYYPKLSLVQIMQPAWQKAQLIDMQSELCCSVWQQL-AQQRAPVV---I 77 Query: 80 HAGSEDLEVFLNVFGEL-PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTD 138 HA S+DLE+ +++ G+L P DTQI + + + V+ Y G+ LDKSE+R+D Sbjct: 78 HAASQDLEL-MHLHGQLLPNMFRDTQIGFSLISPHKAISYLGFVQHYLGIDLDKSETRSD 136 Query: 139 WLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPED 198 WLARPLT QC+YAA DV LL L + + + +EC+ + + P Sbjct: 137 WLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWWQEECQNLLHEQYHHKEPYH 196 Query: 199 AWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGE 257 W + A Q +R + L R A + DL ++ +E + +A P Sbjct: 197 -WFKLRGAPQKIRKIHQNTAEALVQLRETVAEKYDLPRRKILSDEKIIEIALAQPQKFD- 254 Query: 258 LDSLGLSGSEIRFHGKTLLA-LVEKAQTLPEDALPQPM-LNLMDMPGYRKAFKAIKSLIT 315 D L L +E F + +A E+ +T A P+ LN R + Sbjct: 255 -DCLALLPAEHYFLAEENIAEHFEQIRTQTPPAQPRAARLN----KRQRNILTQLMQFTD 309 Query: 316 DVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE 364 DV+ I AE LA+ Q+ W L + + L GWR + AE Sbjct: 310 DVANALNIHAETLATPNQLRS-----WILNQEKS--ALNHGWRQAIFAE 351 >UniRef50_Q5PBN9 Ribonuclease D n=5 Tax=Anaplasma RepID=Q5PBN9_ANAMM Length = 401 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 109/392 (27%), Positives = 182/392 (46%), Gaps = 62/392 (15%) Query: 5 MITTDDALASLC-EAVRAFP-AIALDTEFVRT-RTYYPQLGLIQLFDGEHLALIDPLG-I 60 ++ + + LA C + +R P ++A+DTEFVR+ YYP+L L+Q+ ++D L Sbjct: 6 LVCSTNELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQCVVDVLDER 65 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFA 119 D SPL+ I D I K H +DL+ F LP+P+ DTQ + C S G++ Sbjct: 66 LDLSPLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYS 125 Query: 120 SMVEEYSGVTLDK-SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 +VE++ GV L+K R DW RPL+E + YA DV YL + L+ A L Sbjct: 126 KLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLTW 185 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAW-QLRTRQLACLQLLADWRLRKARERDLAVNF 237 L+E M+ + V D+ + + + +L + + + +WR + AR ++ N Sbjct: 186 FLEE---MENIAEAFVDNYDSLLEGMDFFPELGESEAIIARSIIEWREKVARLFNVNRNI 242 Query: 238 VV---------------REEHLWSVARYMPGSLGELDSLGLSGSEI--RFHGKTL--LAL 278 V+ R+E + + RY+ GS LD+L S +I G+ L L Sbjct: 243 VMHSKSVLLATKDFLRSRDEEV--LYRYVSGSY--LDNLPFSLCDILESSAGRKLGVYKL 298 Query: 279 VEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL 338 V++ +PML+ A+ L+ + H IS +L+AS+ ++ +L+ Sbjct: 299 VDR---------DKPMLS------------ALLILLNSMCREHGISQKLVASKVELVKLI 337 Query: 339 NWHWKLKPQNNLPELISGWRGELMAEALHNLL 370 N K +N ++ GWR E + + Sbjct: 338 N-----KIHSN---IMHGWRYEFFGRKVEKFI 361 >UniRef50_B8FEX5 3'-5' exonuclease n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FEX5_DESAA Length = 388 Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 171/385 (44%), Gaps = 22/385 (5%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ ++ D+ALA L +++++ IA+D E Y + L+Q+ ++DPL Sbjct: 14 DFVLVDNDNALADLTQSLQSQKCIAVDLEADSMFHYQEKACLLQITSNGLNYIVDPLCDC 73 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L IL + I K H D+ FG L DTQ+ A F G P + G A + Sbjct: 74 DVKALAPILENDEIQKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGEPQT-GLAPL 132 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL---PITAKLMVETEASGWLPA 178 +E GV L+K + +W RPL YAA D +LL I K +VE + W+ Sbjct: 133 LESRFGVQLEKKYQKKNWSLRPLPPEMMAYAANDTVHLLELAEILKKELVEKDRLFWVE- 191 Query: 179 ALDECRLMQMRRQEVVAPEDA--WRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 +EC ++ R + P D + A +L R L L+ + R A++ + + Sbjct: 192 --EECEILTHARP--MPPNDGPLFLRFRGAGKLDPRSLQVLENILHVRDDLAKKWNRPLF 247 Query: 237 FVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP---- 291 V+ + +A+ P + L SL G S + + G L+ ++ +++P++ LP Sbjct: 248 KVLGNTPILEMAQKRPLNTKGLVSLHGFSPKQAKMFGHELIRAIKAGKSVPDEKLPSYPR 307 Query: 292 --QPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 +P LN P K K +K + E + + ++ + QI + + + + + Sbjct: 308 KKRPPLN----PKAPKRAKVLKDWREKMGEELGVESSVVLTNAQIQAMASNKPRSIRELD 363 Query: 350 LPELISGWRGELMAEALHNLLQEYP 374 + + W+ ++ + L LL+ P Sbjct: 364 ECQEVRQWQKKVFGQTLVELLKAVP 388 >UniRef50_B2UPD3 3'-5' exonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPD3_AKKM8 Length = 352 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/250 (31%), Positives = 115/250 (46%), Gaps = 10/250 (4%) Query: 5 MITTDDALASLCEAVRAFPA--IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 MI+ + L + A PA + LD E Y ++ LIQ D LIDPL I D Sbjct: 1 MISEKEELLEWRKRAAAQPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLSIED 60 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P L++ + ++H D+ +F N + LP + DTQ A G +G A++V Sbjct: 61 MGPFYNWLKETEV--WMHGADYDMSLFQNAWETLPAMIWDTQTAARLLG-FRQFGLAALV 117 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E + G+TL KS + DW RPL+ YA DV Y+L + KL G + + Sbjct: 118 EHFHGITLSKSSQKADWARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGWFEEI 177 Query: 183 CR--LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 CR + + R + + +D WR I +L + LA L+ + WR +A+ D V Sbjct: 178 CRHSMERARERHLAGHQDPWR-IQGCGKLNRKGLAALREMWTWRDAEAKTWDKPAFMVCS 236 Query: 241 EEHL--WSVA 248 L WSVA Sbjct: 237 NADLIQWSVA 246 >UniRef50_A7HCG7 3'-5' exonuclease n=4 Tax=Anaeromyxobacter RepID=A7HCG7_ANADF Length = 296 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 88/275 (32%), Positives = 133/275 (48%), Gaps = 7/275 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 ++ +L+ L E VRA P +ALDTE Y ++ L+Q+ ++DPL + D S Sbjct: 12 LVADSSSLSRLVEEVRAEPVVALDTESNSFHVYRERICLLQVSTRAADYIVDPLAV-DPS 70 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFG-ELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL +L D T LH D+ +G LP+ L DT A GR G +++VE Sbjct: 71 PLGEVLCDGRET-VLHGADYDVRCLRREYGWHLPR-LFDTMAAARRLGR-QGLGLSALVE 127 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + GV L K+ R+DW RPLT Q YAA D YLL + L E + G A E Sbjct: 128 AHFGVRLSKTFQRSDWGQRPLTAAQLAYAALDTHYLLALRDMLAGELDTLGASEQARREF 187 Query: 184 -RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 R+ + +E V + +R + A +L LA L+ + R +A D V+ E+ Sbjct: 188 ERIAAVVARERVFDPEGFRRLRGARELDPAGLAVLRAIYVAREERASGLDRPPFKVLGED 247 Query: 243 HLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLL 276 + ++AR +P EL + G++ S +R G +L Sbjct: 248 AMIAIARRLPRDADELGRIPGVTPSVMRRLGDEIL 282 >UniRef50_UPI0001746047 ribonuclease D, putative n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746047 Length = 381 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 168/379 (44%), Gaps = 31/379 (8%) Query: 2 NYQMITTDDALASLCEAVRAF------PAIALDTEFVRTRTYYPQLGLIQLFDGEHLALI 55 +Y I T++ L L + + + LDTE + +L LIQL ALI Sbjct: 13 DYYWIDTEEQLRGLAADLNSLITRGELTRVYLDTEADSLHHFQEKLCLIQLAANGIYALI 72 Query: 56 DPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 DPL ++D PL ++ + + + H+ DL + P L DTQ+ A G + Sbjct: 73 DPLVLSDLGPLLEVVDNAEV--WFHSADYDLTLLKRTCNWTPTHLKDTQVAARLTGH-RT 129 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG- 174 +G A++VE++ GVTL KS + DW RPL + YA DV YL + M + A Sbjct: 130 FGLAALVEQHCGVTLCKSSQKEDWSLRPLPAKMQAYAVDDVRYLGRLVDIFMTDLVAKDR 189 Query: 175 --WLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERD 232 W + + R + RQE E AWR I+ + +LR LA L+ + +WR ARE+D Sbjct: 190 VTWFEQSCESLRRDVLSRQEKDRDE-AWR-ISGSGRLRPAGLAILREVWNWRDGIAREKD 247 Query: 233 LAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGK---TLLALVEKAQTLPEDA 289 + V+ + + ++A E ++ G + R+ G+ T A V + + + Sbjct: 248 VPPFRVLNNQQMLTMA-------TEFETSGTAHPPPRWRGRWKETFEAAVTRVKKADPAS 300 Query: 290 LPQ-PMLNLMDMPGYRKAFKAIKSLITDV-SETHKISAELLASRRQINQLLNWHWKLKPQ 347 P+ P + M +A D+ +E + LL SR + L+ L P Sbjct: 301 WPERPKKHARRMTDQDRAKIDRLCQARDLKAEGLGLETSLLGSRGLMEDLV-----LNPD 355 Query: 348 NNLPELISGWRGELMAEAL 366 + + W+ E++ + L Sbjct: 356 GEVRNKLMAWQREVLQDVL 374 >UniRef50_B4D6R3 3'-5' exonuclease n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6R3_9BACT Length = 352 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 85/291 (29%), Positives = 125/291 (42%), Gaps = 13/291 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I T +AL ++ + P I +DTE Y+ +L LIQ+ H LIDPL Sbjct: 4 LIDTAEALQAVPPLLAPHPRIPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPLAGISLQ 63 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL + +H DL + V + P+ DT I A CG + A++++ Sbjct: 64 PLFEAFAGKEL--IIHGADYDLRLLRRVGFTVTAPVFDTMIAARLCG-IEEFSLAALIKR 120 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE---TEASGWLPAALD 181 Y V L K+ + +W RPL+ + +YA D YLL I L E + W + D Sbjct: 121 YFDVALTKASQKANWARRPLSPQMADYAVKDTHYLLEIAGILEAELTRLDRMEWFRQSCD 180 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + +E PE+ WR IT + LR R A L+ L WR +A+ D ++ Sbjct: 181 KAVAASAITKE-RDPEEVWR-ITGSKDLRGRASAILRALWHWREAEAQAVDRPTFHILHS 238 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQ 292 E L A + E+D L G R VE A+ LPE P+ Sbjct: 239 EQLIEAAAKLDRD-QEVDFSQLHGPRRR----RFYEAVETAKALPESEWPK 284 >UniRef50_D0RPF8 Putative ribonuclease D n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPF8_9RICK Length = 352 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 24 AIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW-SPLKAILRDPSITKFLHAG 82 + +DTEF R +TYY +L +I + DG+ + + D L D ++ I + K +H G Sbjct: 21 CLCVDTEFERKKTYYSKLSIITISDGQKVFIFDLLKFPDQIKTIREIFKSKKKIKIIHGG 80 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 +D+E+FLN + +P DTQI + F G + +A++V++Y LDK DWL R Sbjct: 81 MQDIEIFLNHNVNI-EPFFDTQIASGFLGLDKNISYANLVKKYFKKILDKKHQNEDWLKR 139 Query: 143 PLTERQCEYAAADVWYL 159 PL Q +Y DV YL Sbjct: 140 PLLNSQIKYLERDVKYL 156 >UniRef50_C4XX47 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4XX47_CLAL4 Length = 738 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 80/295 (27%), Positives = 135/295 (45%), Gaps = 20/295 (6%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWS 64 + T DAL + EA+R+ IA+D E R+YY L+Q+ + E ++D L + D Sbjct: 222 VDTVDALQEMIEALRSSTEIAIDLEHHDYRSYYGITCLMQISNREQDWIVDTLALHDDLR 281 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L I +P+I K LH + D+ G L DT + G P + A ++E Sbjct: 282 DLNEIFANPAILKVLHGANMDIIWLQRDLGLYIVSLFDTYHASKKLGFP-KFSLAYLLEN 340 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE--TEASGWLPAALDE 182 ++ K DW RPLT+ +YA AD +LL I +L + G + L E Sbjct: 341 FAHFKTSKKYQLADWRIRPLTDAMMQYARADTHFLLNIYDQLRNKLLNAGQGKVQEVLYE 400 Query: 183 CRLMQMRRQEVVA----PEDAW----------RDITNAWQLRTRQLACLQLLADWRLRKA 228 R + RR E + D W R + N + + ++ +Q L +WR + A Sbjct: 401 SRKVASRRFEFNSFKQDQTDNWMHSYGGMGQERWVMNQYNIEPERIEIVQALINWRDKVA 460 Query: 229 RERDLAVNFVVREEHLWSVARYM-PGSLGEL-DSLGLSGSEIRFHGKTLLALVEK 281 RE+D + +++ + L +++ + P ++ ++ G S +R + K L L+EK Sbjct: 461 REKDESTRYIMSNQVLANLSSLVAPVDASKVHNAAGSQYSIVRQNSKELAELIEK 515 >UniRef50_B0S9S6 Ribonuclease III n=6 Tax=Leptospira RepID=B0S9S6_LEPBA Length = 406 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/274 (29%), Positives = 124/274 (45%), Gaps = 13/274 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 NY ++ T AL +R +++DTE TYYP++ LIQ+ LIDPL IT Sbjct: 6 NYILVDTAKALDLALINLRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKIT 65 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + S L + DP+I K H+ +D++ FG DT I + + + Sbjct: 66 NLSALGPLFEDPNILKIFHSAQDDIKALKRDFGFKFVNTADTMISSR-LLSLEQSSLSFV 124 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE Y VTL K E +++W RPL ++Q +YAA D YL I K+ + + A Sbjct: 125 VEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSLYDEAKS 184 Query: 182 ECRLMQMRRQEVVAPE------DAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAV 235 E + ++ VA E + DI N L R++ L+LL +R KA+ + A Sbjct: 185 EFDFIA--SEDYVAKEGEGFSLGKFPDILNFTPLERRKI--LELLR-YRDEKAKRINKAS 239 Query: 236 NFVVREEHLWSVARYMPGSLGELDSLGLS-GSEI 268 V + L + P ++ G G+EI Sbjct: 240 FRVFNNDRLSQSVKEQPNEEKCIEWFGKKDGTEI 273 >UniRef50_A0LFB2 3'-5' exonuclease n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LFB2_SYNFM Length = 295 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 115/254 (45%), Gaps = 16/254 (6%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 +A+DTE Y+ ++ LIQ+ E +IDPL + D S L + +P I K LHA S Sbjct: 26 LAVDTESNSFYAYFDRVCLIQISSPERDYIIDPLSLKDLSVLGRLFENPRIEKVLHAASN 85 Query: 85 DLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPL 144 D+ F L DT I G G + ++E + GV+L+K R DW RPL Sbjct: 86 DVLGLRRDFQFRFNGLFDTAIACKLLGYKQ-LGLSKILETHFGVSLNKRWQRYDWGKRPL 144 Query: 145 TERQCEYAAADVWYLLPITAKLMVETEASG-WLPAALDECRLMQMRRQEVVAPEDAWR-- 201 Q +YA D YL+ + L + ++ W A C + ++ V PE + Sbjct: 145 VPDQLDYARLDTHYLIALRHMLAADLQSRELWAEA----CEAFEKASEQQV-PEKTFHPR 199 Query: 202 ---DITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 I A L + L+ L +R ++AR RD A ++ E L +A P S+ E+ Sbjct: 200 GFLQINGARSLDAAGKSILKALYMFREKEARRRDRAPFRIMSNEALLRLADARPDSVDEI 259 Query: 259 DSL-GLSGSEIRFH 271 + GL S FH Sbjct: 260 SRIKGLPRS---FH 270 >UniRef50_Q6A8V2 Ribonuclease D n=2 Tax=Propionibacterium acnes RepID=Q6A8V2_PROAC Length = 412 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 150/353 (42%), Gaps = 32/353 (9%) Query: 5 MITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T D+L C A+ IA+DTE Y P+ LIQL DG L+DPL + Sbjct: 17 VVNTPDSLTHTCRALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGG 76 Query: 63 WSPLKAILRDPSITK-FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 LK + + + T+ LHA ++D+ L + G P L DT++ P M Sbjct: 77 AVGLKPLAKALAGTQWILHAATQDMPC-LAMDGLRPDDLFDTELAGRLLNLPRV-SLGPM 134 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE Y GVTL K S +DW RPL YAA DV L + K++ + +G A Sbjct: 135 VERYCGVTLLKEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWARQ 194 Query: 182 ECRLM-----QMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD-WRLRK--ARERDL 233 E + + +E WR +++ + +R A LQL D W R+ A + D+ Sbjct: 195 EFAHLVEVAADLPSEEPGIDPKRWRKLSHIGDIHSR--AGLQLAHDLWLARENLAHDLDI 252 Query: 234 AVNFVVREEHLWSVARYMPGSLGELDS------LGLSGSEIRFHGKTLLALVEKAQTL-- 285 ++R+E L + AR+ G +D G + + +T + A+++ Sbjct: 253 MPGRLLRDEALVAAARHC-DRTGNVDVETVLAIRGFHRGRAKKYRQTWAEAINHARSVSP 311 Query: 286 --------PEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLAS 330 P +P P P + A++ + DV+ H + E L + Sbjct: 312 TKYPPLREPSSGIPHPRSWERHHPEEAARWAAVRPAVNDVAADHDVPPENLCT 364 >UniRef50_D2SEB8 3'-5' exonuclease n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SEB8_9ACTO Length = 418 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 152/357 (42%), Gaps = 37/357 (10%) Query: 5 MITTDDALASLCEAVRAFPA-IALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLGITD 62 +I T AL EA+ A +A+D E Y + L+QL G LIDP+ + D Sbjct: 36 VIETSTALVEYAEALAAGSGPVAVDAERASGYRYGQRAYLVQLRRVGTGTGLIDPIPLPD 95 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S +++ + D LHA S+DL V G +P L DT++ A G P G ++V Sbjct: 96 LSVVQSAIVD--AEWVLHAASQDLPSLAEV-GLVPARLFDTELAARLAGLPRV-GLGAVV 151 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G L+K S DW RPL E YAA DV L+ + L A L+E Sbjct: 152 ESLLGYRLEKGHSAADWSTRPLPEEWLVYAALDVEVLVDLRDALA----------AVLEE 201 Query: 183 CRLMQMRRQEVV--------APE-DAWRDITNAWQLRT-RQLACLQLLADWRLRKARERD 232 + RQE AP D WR + LR+ RQL L+ L R AR RD Sbjct: 202 QGKTEWARQEFAAILAAGPPAPRADPWRRTSGVHGLRSRRQLGMLRSLWQARDELARRRD 261 Query: 233 LAVNFVVREEHLWSVARYMPGSLGELDSLGL-SGSEIRFHGKTLLALVEKAQTLPEDAL- 290 +A V+ + + S + P + L L + G R T + + + LPE L Sbjct: 262 IAPGRVLPDAAMVSAVQADPRTEAALLELPVFRGRANRKLVGTWFGALTRGRELPESELP 321 Query: 291 --------PQPMLNLMDM-PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL 338 P P+ D P +A ++ + +++ TH + E L S + +L+ Sbjct: 322 LHSRPGDGPPPVNRWADRDPAAATRLQAARAGLAELAATHSLPVENLLSPDLVRRLM 378 >UniRef50_Q2LWK2 Ribonuclease D n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWK2_SYNAS Length = 339 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 27/270 (10%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 I+LDTE+ + +L L+Q+ + + DP D L+ DP + K HAG Sbjct: 78 ISLDTEYDSMHYFREKLCLVQVRASKRTYVFDPFNGIDLQFLRPYFADPRLLKVTHAGDN 137 Query: 85 DLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSES--RTDWLAR 142 D+ + +G + + DT A G +S++E+Y GV ++K++ R+ W AR Sbjct: 138 DIRILKRDYGFEFRNIFDTHRAAHMLG-SQYLALSSIIEQYLGVEIEKTKKMQRSKWEAR 196 Query: 143 PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDA--W 200 PL+E Q YA D YL + L + G MQ R ++V A W Sbjct: 197 PLSEGQLRYAVQDTAYLADLYRHLNEKLSLKG-----------MQERARKVFENVAAVSW 245 Query: 201 RD----------ITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARY 250 R+ I+ L L+ L WR KAR+ + A+ ++ + L S++ Sbjct: 246 REKTLDLLGHRRISGYASLTADSKGRLKKLYRWRFHKARQTNRAMFLILPDSALLSLSEG 305 Query: 251 MPGSLGELDSLG-LSGSEIRFHGKTLLALV 279 S+ EL S G LS + +G L+ ++ Sbjct: 306 NWQSVEELRSAGILSEGKTDLYGSELMKVL 335 >UniRef50_Q23S17 3'-5' exonuclease family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23S17_TETTH Length = 881 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 19/292 (6%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 + +D L + E+++ +A+D E R++ L+Q+ ++D + Sbjct: 246 FVDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISSRTKDYIVDVFSVWKSL 305 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L A+ D +I K LH D++ FG L DT A P S+ A +++ Sbjct: 306 HKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDTGQAARTLSMP-SYALAYLLQ 364 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE---------TEASG 174 S V DK DW RPL YA +D YLL I L ++ AS Sbjct: 365 SISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYDNLRIQLVSKALQQGQNASH 424 Query: 175 WLPAALDECRLMQMRRQEVVAP---EDAWRDITNAWQ--LRTRQLACLQLLADWRLRKAR 229 ++ + L++ R + +++ V P ++ + I + L R+ L+ L +WR + A Sbjct: 425 FIESVLNKSRAICLKK--YVKPILDDEKYHSILQNQRIILSDRKFRILKRLLEWRYKMAA 482 Query: 230 ERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVE 280 + D FV+ + L+++ +P + E S L S + ++H +L++++ Sbjct: 483 KYDENPTFVLANDILFNIVNRLPQTQKEFASSNLKLSYVCQYHANEILSIIK 534 >UniRef50_C7NI77 Ribonuclease D n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NI77_KYTSD Length = 431 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 106/229 (46%), Gaps = 13/229 (5%) Query: 25 IALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGS 83 +A+D E Y L+QL G L+DP+GITD SPL L P LHA + Sbjct: 36 VAIDAERASGHRYGNDAYLVQLRRQGAGTLLVDPMGITDMSPLAEALDGPEW--VLHAAT 93 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 +DL + G P+ L DT++ G P G A++VE Y +TL K S DW RP Sbjct: 94 QDLPCLAD-LGLRPRSLFDTELGGRLVGLPRV-GLAAVVEHYLDLTLAKEHSAVDWSTRP 151 Query: 144 LTERQCEYAAADVWYLLPITAKLMVETEASG---WLPAALDECRLMQMRRQEVVAPEDAW 200 L YAA DV L+ + + + E G W D + ++AW Sbjct: 152 LPTDWLVYAALDVEVLVEVRDAMEADLERLGRDEWARQEFDALTSFTAKDHG----DEAW 207 Query: 201 RDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 R + ++ R RQ A L+ L R ARERD+ + V+ ++ L ++A Sbjct: 208 RRTSGTHRIRRPRQAATLRELWLVRDEMARERDVTPSKVMHDDALVALA 256 >UniRef50_B9XPC9 3'-5' exonuclease n=1 Tax=bacterium Ellin514 RepID=B9XPC9_9BACT Length = 372 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 132/308 (42%), Gaps = 38/308 (12%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++I +D L +L + + P +ALDTE Y ++ L+Q+ PLG Sbjct: 16 KVIDSDVTLKNLLGRLSSTPWVALDTEADSLHAYPEKVCLLQI--------TTPLGDELI 67 Query: 64 SPLKAILRDPSITKF------LHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 PL I DP + F +H DL + +P+ + DT + + G +G Sbjct: 68 DPLSGINLDPLLDTFGGHELIMHGSDYDLRLLRKHHAFVPKAIFDTMLASRLLGH-TQFG 126 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 +V Y GVTL+K + DW RPLT R YA D YL + +L + E G L Sbjct: 127 LVHLVAHYLGVTLEKGSQKADWAKRPLTPRMEAYARNDTHYLKHLADRLKSDLEVKGRLG 186 Query: 178 AALDECR--LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAV 235 + C +++ + P+ WR I + +L LA L+ + WR +A + Sbjct: 187 WHQELCARLIIECSQNPEPDPDLVWR-IKGSNRLYRPALAVLREVWRWREAEAIVANRPP 245 Query: 236 NFVVREEHLWSVARYMPGSLGELDSLGLSGSEI------RFHGK---TLLALVEKAQTLP 286 FV+R E +L +L + SG + +F + TL +++ ++P Sbjct: 246 YFVLRHE-----------TLIDLSAAAASGHPVQPLLPQKFSDRRRATLSEAIKRGLSVP 294 Query: 287 EDALPQPM 294 + P+P+ Sbjct: 295 HEQQPEPL 302 >UniRef50_B1ZWM0 3'-5' exonuclease n=2 Tax=Opitutaceae RepID=B1ZWM0_OPITP Length = 391 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 6/233 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y +I LA L A+ +ALDTE Y ++ L+Q G + L+D L Sbjct: 25 YVLIDQPGQLAPLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVLAPLP 84 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L A L + ++ +H DL + + P+ + DT + A RP G AS++ Sbjct: 85 FEGLWARLAEKNL--IMHGSDFDLRLLHDFCRFRPKSIFDTMLAAQLINRP-RIGLASLL 141 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E++ GV L K + +W RPLT++ +YAA DV++L + L E G + + Sbjct: 142 EDHFGVKLSKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKLGRIEWLRQQ 201 Query: 183 CRLMQMRRQEVVAP--EDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDL 233 CR AP E+ WR I + +LR L L + WR + A+ D+ Sbjct: 202 CRAQIEAGSIGFAPPDENDWR-IGRSEKLRGPGLGVLHAVWHWREQTAQRLDV 253 >UniRef50_C4QXG4 Exonuclease component of the nuclear exosome n=1 Tax=Pichia pastoris GS115 RepID=C4QXG4_PICPG Length = 717 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 153/356 (42%), Gaps = 31/356 (8%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWS 64 + T+ + + + + IA+D E RTYY + L+Q+ ++D L + Sbjct: 215 VETEQQVGDMIDTLSKADVIAVDLEHHDLRTYYGLVCLMQISTRNQDYIVDTLKLRFKLQ 274 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL + DPSI K H D+ G L DT + G P A ++E Sbjct: 275 PLNKVFTDPSIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASKLLGFP-KHSLAYLLET 333 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y+ K DW RPLT+ YA +D +LL I +L SG L L + R Sbjct: 334 YAKFKTSKKYQLADWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIESGKLSQVLYDSR 393 Query: 185 LMQMRRQE------------VVAP----EDAWRDITNAWQL-RTRQLACLQLLADWRLRK 227 + +RR E VV+P ++ W+ + + + R+RQ + L +WR Sbjct: 394 QVALRRFEYTKFRPNFPTPLVVSPLNDRKEPWKQLLYLYNIPRSRQPVFIALY-NWRDEI 452 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIR--FHGKTLLALVEKAQ-T 284 ARE D + +V+ + L ++ P + L +S S IR + K LVE + T Sbjct: 453 AREDDESTRYVLPNQLLATITSISPTDVSSL----MSCSNIRTPYLKKYATELVEIIKST 508 Query: 285 LPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQI-NQLLN 339 L E A Q + +L G K KA V + ++ + L+ S++Q+ N+ LN Sbjct: 509 LKEGAENQDVKSLTSN-GIEK--KAENVDYQTVLNSDRLYSHLMDSQKQLDNEALN 561 >UniRef50_C4Q1K8 Polymyositis/scleroderma autoantigen-related n=1 Tax=Schistosoma mansoni RepID=C4Q1K8_SCHMA Length = 830 Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 80/297 (26%), Positives = 126/297 (42%), Gaps = 11/297 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 YQ + T D L + +++ IA+D E R++ LIQ+ +ID L + D Sbjct: 214 YQYVDTLDTLEQIMKSLSMCKYIAVDLEHHSYRSFLGITCLIQMSTLGSDYIIDALALRD 273 Query: 63 W-SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC--GRPMSWGFA 119 S L + DP I K H DL FG L DT I A GR + + Sbjct: 274 HLSILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTGIAARLLQYGR---FSLS 330 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +++ + G+ +K DW RPL EYA +D YLL I +++ E + L A Sbjct: 331 YLLQRFVGIYANKKYQLADWRIRPLPNELIEYARSDTHYLLHIASRMCRELQDRDLLSVA 390 Query: 180 LDECRLMQMR-RQEVVAPEDAWRDI---TNAWQLRTRQLACLQLLADWRLRKARERDLAV 235 ++ R + +R + V + D+ T + RQL L+ L R AR D ++ Sbjct: 391 IERARQLCLRCYTKPVFNRLGYLDLYRQTGSSSFSHRQLYALENLYALRDSIARREDESL 450 Query: 236 NFVVREEHLWSVARYMP-GSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP 291 ++V+ L +A +P S G +R + L ++ A+ LP LP Sbjct: 451 HYVLPNHMLKVIAEVLPRESSGIFACCNPIPPLVRKYVHDLHKIIVDARNLPITDLP 507 >UniRef50_A9V721 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V721_MONBE Length = 471 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 123/275 (44%), Gaps = 24/275 (8%) Query: 29 TEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT--DWSPLKAILRDPSITKFLHAGSEDL 86 TEFV Y P+L ++Q+ LA +D T L +L I LH+G DL Sbjct: 101 TEFVHFPMYRPKLEVLQIGTETTLAAVDCAAYTKAQLKELTRVLAQKEI--ILHSGQTDL 158 Query: 87 EVFLNVFGELPQPLIDTQ---------------ILAAFCGRPMSWGFASMVEE-YSGVTL 130 ++ V + + DTQ + A G + G A +V + V + Sbjct: 159 DLLTEVNEAPLERVFDTQLAYLINATLFIRNPQVAANLLGIRNTIGLADLVTHMFPEVKM 218 Query: 131 DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRR 190 DK ++ +DW RPL + Q YA +DV +L+ + +L A G ++ R + R Sbjct: 219 DKGQALSDWRVRPLNDEQLLYAISDVEHLIEMRHRLQDALSARGVEAWFQEDMRTLLTPR 278 Query: 191 QEVVAPEDAWRDITNAWQLRT--RQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 A ED W D ++R A L+ L WR + AR R++A VVR++ L S+A Sbjct: 279 -PTPADEDLWLDFRRLNKVRELPTARAILRALVAWREQTARARNVATPIVVRDDVLLSIA 337 Query: 249 RYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKA 282 P + ++ + G+ I+ + +L LV++A Sbjct: 338 IAQPSTTEQIMTFQGVKMPFIKHNASDILNLVQRA 372 >UniRef50_D2RBB4 3'-5' exonuclease n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBB4_GARVA Length = 476 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 122/277 (44%), Gaps = 13/277 (4%) Query: 4 QMITTDDALASLCEAVRAFPA-IALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT 61 ++I T +A C + A +A D E Y + LIQ G + L+DP+ +T Sbjct: 17 EVIDTLEAYKDYCSLLEAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELT 76 Query: 62 ----DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 DW+ + D + +H +DL F N+ G P L DT+I A GR +G Sbjct: 77 KLGADWNEFNKAVGD--VPWIIHDSMQDLPGFFNI-GLRPLALFDTEIAAKLLGR-KRFG 132 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 +S+ E Y G+TL K S DW RPL YAA DV L+ + + VE + G L Sbjct: 133 LSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLS 192 Query: 178 AALDECRLMQMRRQEVVAPE-DAWRDITNAWQLRTRQLACLQLLADWRLRK--ARERDLA 234 A +E + + + + AP W I++ L ++ + A W+ R ARE D+A Sbjct: 193 WAEEEFKHLLSKGAQKKAPHPRPWLKISHISVLMHDRVGLVIAKALWQKRDALAREYDIA 252 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH 271 ++ + + + P + ++ +R H Sbjct: 253 PTLLLSDAAIIEAGKRKPSNARAFRAIRSLNERVRMH 289 >UniRef50_UPI0000D56CFF PREDICTED: similar to Rrp6 CG7292-PB n=1 Tax=Tribolium castaneum RepID=UPI0000D56CFF Length = 377 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 124/288 (43%), Gaps = 6/288 (2%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 I T +L L ++A+ + +D E+ Y L+Q+ + +ID + + D Sbjct: 76 IDTKTSLEELITDLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIALKDELH 134 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + +P I K H+ DL+ G L DTQI G G +++++ Sbjct: 135 ALNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMKALGYK-KLGLDALLQD 193 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y V DK+ R D+ RPL + +YA D YL+ KL E + L A LD+C Sbjct: 194 YH-VAKDKTMQRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 252 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 V E N ++ RQL L+ L WR + A+ D V V+ + ++ Sbjct: 253 NCCKILYPKVEDEAYLSVRRNVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNM 312 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQ 292 ++ MP ++ + S S ++ H ++ ++ + + + LPQ Sbjct: 313 ETLVLQMPSDSADIMQISQS-SHVKEHLDEVMQILSEGNPV-RNTLPQ 358 >UniRef50_C7R4I8 3'-5' exonuclease n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R4I8_JONDD Length = 406 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 101/382 (26%), Positives = 163/382 (42%), Gaps = 33/382 (8%) Query: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWSP 65 TT A+L R A+D E Y + LIQ+ +G LIDP + D+S Sbjct: 26 TTVSYQAALRRLDRGHGPFAVDAERASGYRYGDRNYLIQVRREGAGTFLIDPTAVDDFSE 85 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L A++ + T HA +DL + G P + DT++ A G A++ + Sbjct: 86 LNAVM--AADTWIFHAAIQDLGPLRDQ-GLTPGTIFDTEVAARLLGLDRV-NLAAVTAHF 141 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYL--LPIT-AKLMVETEASGWLPAALDE 182 GVTL+K S DW RPL YAA DV L L I+ + ET W A +E Sbjct: 142 LGVTLEKQHSHQDWSTRPLPSSWLTYAALDVELLGDLAISETDALTETRKLRW---AHEE 198 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNFVVRE 241 +Q +R + D WR + ++ R+LA +Q L + R + AR +DLA + ++ + Sbjct: 199 FAYIQAQR--AIHRPDPWRRTSGIQRVTDRRRLAVVQHLWNEREKIARSKDLAPSRILSD 256 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPED-----------A 289 + A +P ++G L ++ G+ R + A TLP Sbjct: 257 RGIIEAAITLPRTVGALLAIHEFGGAANRRRSHQWQRAINHALTLPSSELPPRRLPAPPK 316 Query: 290 LPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 LP + P A + + +++ TH + E + + + QLL W P + Sbjct: 317 LPPHKIWEEKNPLAATRLTAAREFLDELAATHHLPVENIIQPKVVRQLL-WDATTTPI-D 374 Query: 350 LPELISG-----WRGELMAEAL 366 +P ++ W+ EL+A+ L Sbjct: 375 VPAYLTNNQVRPWQQELVAQTL 396 >UniRef50_Q12149 Exosome complex exonuclease RRP6 n=9 Tax=Saccharomycetaceae RepID=RRP6_YEAST Length = 733 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/314 (26%), Positives = 132/314 (42%), Gaps = 32/314 (10%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWS 64 + T L S+ E ++ IA+D E R+YY + L+Q+ E L+D L + + Sbjct: 216 VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLH 275 Query: 65 PLKAILRDPSITKFLHAGSEDL-----EVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 L + +PSI K H D+ ++ L V G L DT + G P A Sbjct: 276 ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVG-----LFDTYHASKAIGLPR-HSLA 329 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 ++E ++ K DW RPL++ YA AD +LL I +L + S L Sbjct: 330 YLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGV 389 Query: 180 LDECRLMQMRR------------QEVVAP---EDAWRDITNAWQLRTRQLACLQLLADWR 224 L E R + RR EV +P E W+ + + + + ++ L WR Sbjct: 390 LYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQWR 449 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEKA- 282 AR D + FV+ + L ++ Y P + + SL +E +R + K L L+ A Sbjct: 450 DLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDAL 509 Query: 283 ---QTLPEDALPQP 293 + E+A P P Sbjct: 510 RNIKNTNEEATPIP 523 >UniRef50_D1ZW95 Whole genome shotgun sequence assembly, contig_913 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZW95_SORMA Length = 134 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 29/158 (18%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GI 60 + +I LA+LC + +A+DTEF+R +Y+P+L LIQ+ + E A IDP+ GI Sbjct: 4 HPLIEDSATLAALCTRLATSDFVAVDTEFMRENSYWPELCLIQIANTEEAAAIDPMAPGI 63 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +PL +L D +ED+ ++ A G+ G+++ Sbjct: 64 -DLTPLLNLLTD----------NEDV----------------LKVAAMALGQGEQVGYSN 96 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWY 158 +V+ Y G+T+DK TDW RPL +RQ +YA AD + Sbjct: 97 LVDAYLGITVDKGARFTDWSRRPLDDRQIDYAIADATH 134 >UniRef50_C0W3T7 Possible ribonuclease D n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3T7_9ACTO Length = 431 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 127/286 (44%), Gaps = 16/286 (5%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWSPLKAILR 71 A+ C A P +A+D E Y LIQL +G L+DP+ D S L A L Sbjct: 50 AADCLAAGHGP-VAVDAERASGFRYGQDAYLIQLRREGAGTFLVDPVTAGDMSALAAALD 108 Query: 72 DPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLD 131 P LHA +DL L+ G P+ L DT++ A GR G ++VEE G+ L Sbjct: 109 GPEW--ILHAADQDLPC-LSALGLHPRSLFDTELAARLLGR-ARVGLGAVVEETLGLRLA 164 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG---WLPAALDECRLMQM 188 K + DW RPL YAA DV L + L E E +G W D R Sbjct: 165 KDHAAADWSTRPLPRTWLVYAALDVELLADLRVALGAELEEAGKAEWARQEFDYERTRPP 224 Query: 189 RRQEVVAPEDAWRDITNAWQ-LRT-RQLACLQLLADWRLRKARERDLAVNFVVREEHLWS 246 R ++ D WR A + +R+ R LA L+ + R A++ D + V+ + + Sbjct: 225 RPAKI----DPWRKTPRAGRAMRSARSLAVLREVWTAREELAQQLDRTPSKVLPHSAVVA 280 Query: 247 VARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALP 291 A P S +L +L S + R + + VEKA LPED LP Sbjct: 281 AAVARPTSRRKLAALKEFSSRQARLNQEVWWRAVEKALELPEDQLP 326 >UniRef50_Q6C721 YALI0E04444p n=1 Tax=Yarrowia lipolytica RepID=Q6C721_YARLI Length = 738 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 14/262 (5%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y + T++ L + + ++ IA+D E RTYY L+Q+ E +ID + + + Sbjct: 221 YIYVDTEEKLRDMVDHLKTQEEIAIDVEHHSMRTYYGITCLVQVSSREQDYIIDTIALRN 280 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASM 121 +L DP I K LH + D++ FG L DT A G + S F + Sbjct: 281 LEIFNEVLTDPKIVKVLHGATMDIQWLQRDFGLYIVSLFDTFHAAQALGLKGHSLAF--L 338 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++ Y+ K +DW RP++ Q YA AD +LL I +L + L+ Sbjct: 339 LQHYANFVTSKKYQLSDWRIRPMSPEQLLYARADTHFLLNIYDQLKNALVQKDKIEGVLE 398 Query: 182 ECRLMQMRRQEVVA-----------PEDAWRDITNAWQLRTRQLACLQLLADWRLRKARE 230 + R +R E E + + + + ++ + L WR AR+ Sbjct: 399 KSRQTASQRYEYTGYDPRYYLKSFDYEGGINRLISQFHITGPSVSVAKALFLWRDSMARK 458 Query: 231 RDLAVNFVVREEHLWSVARYMP 252 D + +V+ L S+A MP Sbjct: 459 EDESTGYVMPNYLLVSLANRMP 480 >UniRef50_UPI0001B4D324 ribonuclease D n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4D324 Length = 430 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 107/236 (45%), Gaps = 14/236 (5%) Query: 5 MITTDDALASLCEAVRAFPA-IALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 MI + ALA + A A +A+D E Y + L+QL +G ALIDP+ D Sbjct: 1 MIADEAALARVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVACPD 60 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L L + LHA ++DL L G +P L DT++ G P G +MV Sbjct: 61 LSALGEAL--SGVEWVLHAATQDLPC-LREIGMVPTRLFDTELAGRLAGFPRV-GLGAMV 116 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G L+K S DW RPL E YAA DV L+ + L E + G L A E Sbjct: 117 EGVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQE 176 Query: 183 CRLMQMRRQEVVAPE---DAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLA 234 + PE D WR + ++ R RQLA ++ L R R A+ RD++ Sbjct: 177 FDAI----ASAPPPEPRKDPWRRTSGMHKVRRRRQLAVVRELWQTRDRIAQRRDVS 228 >UniRef50_B3RZJ7 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3RZJ7_TRIAD Length = 535 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 11/258 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 +IT D L L E +++ A+D E R+Y + L+Q+ + ++D L + Sbjct: 240 NVITEKDELKDLLETLKSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADYIVDTLALRSE 299 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 W+ L + DP I K LH D+ F + DT A P + + + Sbjct: 300 LWT-LNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDTGQAARLLQFP-RFSLSYL 357 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI----TAKLMVETEASGWLP 177 + +Y VT +K DW RPL + +YA D YLL I T +LM + + L Sbjct: 358 LLKYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYIFDVLTNELMNASTSVDLLK 417 Query: 178 AALDECRLMQMRRQEV-VAPEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLA 234 + D + + +R E V + ++ ++ + + +Q L WR AR+ D + Sbjct: 418 SNFDRSKKICLRTYEKPVFNKKSYLNLLYKHKGRFNHQQNYAFAKLYSWRDSVARDNDES 477 Query: 235 VNFVVREEHLWSVARYMP 252 NFV+ L +A +P Sbjct: 478 ANFVLPNHMLLQIAENLP 495 >UniRef50_A4ALP3 Ribonuclease n=4 Tax=Actinobacteria (class) RepID=A4ALP3_9ACTN Length = 418 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 94/337 (27%), Positives = 145/337 (43%), Gaps = 28/337 (8%) Query: 9 DDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLGITDWSPLK 67 +D LA++ I +D E Y + LIQ+F G L DP I D+S L Sbjct: 31 EDYLAAVEAIAAGNGPIGIDAERASGYRYSQRAYLIQIFRRGAGTFLFDPPAIGDFSELN 90 Query: 68 AILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSG 127 ++ + LHA ++DL V G P L DT++ A G P G ++VE + G Sbjct: 91 DVIANEEW--ILHAATQDLTCLREV-GLYPTRLFDTELGARIAGLPRV-GLGTVVEHFLG 146 Query: 128 VTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQ 187 + L K S DW RPL + YAA DV L+ + EA G L + D+ + Q Sbjct: 147 IHLAKEHSSADWSTRPLPQAWLVYAALDVELLVDL-------REALGELLDSADKHDIAQ 199 Query: 188 ------MRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVR 240 + R ++ + WR ++ +R + LA + L R A+E D A +V Sbjct: 200 QEFDSVLARDLIIVRAEPWRRLSGVHSVRGGKNLAVARELWVARDAYAQEVDTAPGRLVP 259 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFH-------GKTLLALVE-KAQTLPEDALP 291 + L + AR +P + +L +L SG R +T LA + + + D LP Sbjct: 260 DSALVAAARVLPETKRQLSALKEFSGRASRTQLDRWWAAIQTGLASTDIPSSRVVNDTLP 319 Query: 292 QPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELL 328 P + P + KA ++ + + SE I E L Sbjct: 320 PPRVWSEKNPEADRRLKAARASMMEASEEISIPIENL 356 >UniRef50_A8L0K3 3'-5' exonuclease n=84 Tax=Actinomycetales RepID=A8L0K3_FRASN Length = 499 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 118/272 (43%), Gaps = 12/272 (4%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLGITDWSPLKAILRDPSITKFLHAGS 83 +A D E Y + L+Q+ G LIDP+ + D S ++ + D LHA S Sbjct: 85 VAFDAERASGYRYSQRAYLVQIRRAGAGTLLIDPIALPDLSGVQDAVGD--TEWVLHAAS 142 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 +DL L G P+ L DT++ G G +MVE G L+K S DW RP Sbjct: 143 QDLPC-LAELGLRPKTLFDTELAGRLLGY-ERVGLGAMVERVLGFGLEKGHSAADWSNRP 200 Query: 144 LTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR--RQEVVAPEDAWR 201 L E YAA DV L+ + +L E A + A E + R+ P WR Sbjct: 201 LPEPWLRYAALDVELLVELRDQLESELVAQNKMAFARQEFDAIAAAPPREPRAEP---WR 257 Query: 202 DITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS 260 + + R+ RQLA ++ + R R AR RD+A V+ + + P L Sbjct: 258 RTSGIHRARSRRQLAAVRSMWQARDRVARTRDIAPGRVLPDIAIMDAVLKAPEDAAALTR 317 Query: 261 LGL-SGSEIRFHGKTLLALVEKAQTLPEDALP 291 L + SG +R T + + A +PE+ LP Sbjct: 318 LPIFSGPRLRRSATTWMDALRAAAEMPENQLP 349 >UniRef50_B5JQC7 3'-5' exonuclease domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQC7_9BACT Length = 370 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 111/251 (44%), Gaps = 22/251 (8%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGI 60 + + D L LC+ + IALD+E + +L L+QL FDG + L+D Sbjct: 5 GFIYVDKQDELEDLCDHLAKQAEIALDSEADNLHHFETKLCLLQLRFDGT-IYLLDVTAD 63 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D IL + +H DL +F G + L D+ + + G G A+ Sbjct: 64 LDLDRFWEIL--SGLHLIMHGSDFDLRLFEEFCGFEAKSLFDSMLASQLLG-IKRIGLAA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG---WLP 177 ++EE GV + K ++DW RPLT + +YAA DV YL + KLM + G WL Sbjct: 121 LLEENFGVKIPKDSQKSDWSQRPLTPKMLKYAATDVLYLHELRDKLMARIDELGRGEWLK 180 Query: 178 AALDECRLMQMRRQEVVAP---EDAWRDITNAWQLRTRQLACLQLLADWRLRKARERD-- 232 D Q+R + P E++WR I + +L R A + L WR ++ D Sbjct: 181 QRCDN----QIRIAKSGFPRNDENSWR-IPRSDRLDERGQAAVYELWHWRQNLSKRLDRP 235 Query: 233 ----LAVNFVV 239 L +F++ Sbjct: 236 PFKVLGNDFII 246 >UniRef50_UPI0000E469F8 PREDICTED: similar to exosome component 10 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E469F8 Length = 819 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/268 (25%), Positives = 109/268 (40%), Gaps = 16/268 (5%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-T 61 + ++ T L L +++ IA+D E R+Y L+Q+ EH ++D L + + Sbjct: 264 FTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRS 323 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L DP I K H + D++ G + DT + G P AS+ Sbjct: 324 ELQMLNDAFTDPKIVKVFHGANMDIDWLQRDLGLYVVNMFDTHQASRSLGFPH-HSLASL 382 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE-----TEASGWL 176 + Y V DK DW RPL E YA D YLL I + E + L Sbjct: 383 LSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRGNDRRNLL 442 Query: 177 PAALDEC-RLMQMRRQEVVAPEDAWRDITNAWQ-----LRTRQLACLQLLADWRLRKARE 230 A LD+ R+ R + + D+ A+Q +Q+ + L WR AR+ Sbjct: 443 RAVLDQSTRICVQRYNKPIFTNDSH---VTAFQKNRKIFNKKQMHAFKKLFAWRDSLARQ 499 Query: 231 RDLAVNFVVREEHLWSVARYMPGSLGEL 258 D + +++ L+ +A +P G + Sbjct: 500 EDESTGYILPMHMLFQIAEILPKDQGGI 527 >UniRef50_C5DEP9 KLTH0C11066p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DEP9_LACTC Length = 735 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 77/276 (27%), Positives = 116/276 (42%), Gaps = 20/276 (7%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD--WSPLKAILRDPSITKFLHAG 82 IA+D E RTYY L+Q+ E LID + + D W L + DP ITK LH Sbjct: 237 IAIDLEHHDYRTYYGITCLMQISTREKDWLIDTIALRDDLWI-LNEVFTDPKITKVLHGA 295 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 D+ G L DT + G P A ++E Y+ K +DW R Sbjct: 296 FMDIIWLQRDLGLYIVSLFDTYHASRLLGSP-KHSLAYLLERYAHFKTSKKYQLSDWRVR 354 Query: 143 PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQE---------- 192 PL + YA AD +LL I + L L + R + RR E Sbjct: 355 PLPKALKAYARADTHFLLNIYDNMRNSLIEQNKLSQVLHDSRNVAKRRFEFTTFRPKIVT 414 Query: 193 --VVAP---EDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSV 247 V +P ED WR + + + + ++ L +WR AR D + +V+ + L S+ Sbjct: 415 SHVFSPIEREDPWRTLMFQYNIPQSKSLLVRRLYEWRDMVARRDDESPRYVIPNQLLVSL 474 Query: 248 ARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEKA 282 A P + + + +E IR + K+L L++K+ Sbjct: 475 AVNAPTTPALIMATSTFVTEHIRQNAKSLALLIKKS 510 >UniRef50_C0XSM9 Ribonuclease n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XSM9_9CORY Length = 390 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 84/277 (30%), Positives = 120/277 (43%), Gaps = 40/277 (14%) Query: 1 MNYQMITTDDALA-SLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQ---------LF--- 47 MN++++ T A + + A+DTE + Y + L+Q LF Sbjct: 1 MNFELVDTPAAFRRAAAQLFHGRGPCAIDTERASSFRYDDRAFLVQVNRRDAGTFLFAPE 60 Query: 48 ---DGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQ 104 D AL +G TDW LHA EDL L G P L DT+ Sbjct: 61 GHRDALREALAPVIGGTDW--------------ILHAAGEDLPS-LAELGLHPGTLFDTE 105 Query: 105 ILAAFCG--RPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162 I A G RP A+MV E++GVTLD R DW PL + YAA DV YL + Sbjct: 106 IAARLAGFERP---NLAAMVGEFTGVTLDNGYGREDWSTIPLPLQWQAYAADDVVYLSAL 162 Query: 163 TAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRT-RQLACLQLLA 221 L +A+G L AA E +R + AP+ WRD+ L T R L + L Sbjct: 163 AEGLTEVLDAAGKLEAA--EQEFEHVRTRPAPAPK-TWRDLKGISSLPTGRSLHLARALW 219 Query: 222 DWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 D+R + R D + + ++ + + ++A+ P + EL Sbjct: 220 DYRDARGRATDTSPHTLLGSKVILNIAKNPPRTPDEL 256 >UniRef50_C2KQ41 Ribonuclease D n=2 Tax=Mobiluncus RepID=C2KQ41_9ACTO Length = 397 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 132/296 (44%), Gaps = 18/296 (6%) Query: 5 MITTDDALASLCEAVRAFP-AIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T ALA +CE V A ++ALDTE Y+ L+QL + LIDP D Sbjct: 12 VVNTPPALARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPD 71 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL A + LH + D+ +L G P+ L DT++ A +G S+ Sbjct: 72 LEPLGAAIG--KAEWILHDATTDMP-WLAEIGMRPKLLFDTELAAKLLNF-ERFGLGSLT 127 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG---WLPAA 179 E+ G+ L+K S DW RPL + EYAA DV +L+ + L ++ +G W Sbjct: 128 EQVLGIMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWA--- 184 Query: 180 LDECRLMQMRRQEVVAPE-DAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNF 237 E + E AP+ D WR + + ++ + R LA L+ L R + +LA Sbjct: 185 --EQEFEHLLYFEPPAPKPDPWRHVPGSGKVYSPRNLAALRELWQTREKICAAENLAPTK 242 Query: 238 VVREEHLWSVARYMPGSLGELDSL-GLSGSEI-RFHGKTLLALVEKAQTLPEDALP 291 V+ L ++A +P ++S+ + R T A + ++ LP LP Sbjct: 243 VLSNPALIALAVALPRGKRYMNSIEAFRNDRVGRERADTWYAALSRSYKLPVHELP 298 >UniRef50_D0YSP9 Ribonuclease D n=1 Tax=Mobiluncus mulieris 28-1 RepID=D0YSP9_9ACTO Length = 422 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 86/299 (28%), Positives = 134/299 (44%), Gaps = 24/299 (8%) Query: 5 MITTDDALASLCEAVRAFP-AIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T ALA +CE V A ++ALDTE Y+ L+QL + LIDP D Sbjct: 37 VVNTPPALARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPD 96 Query: 63 WSPLKAILRDPSITK---FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 PL A +I K LH + D+ +L G P+ L DT++ A +G Sbjct: 97 LEPLGA-----AIGKAEWILHDATTDMP-WLAEIGMRPKLLFDTELAAKLLNF-ERFGLG 149 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG---WL 176 S+ E+ G+ L+K S DW RPL + EYAA DV +L+ + L ++ +G W Sbjct: 150 SLTEQVLGIMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWA 209 Query: 177 PAALDECRLMQMRRQEVVAPE-DAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLA 234 E + E AP+ D WR + + ++ + R LA L+ L R + +LA Sbjct: 210 -----EQEFEHLLYFEPPAPKPDPWRHVPGSGKVYSPRNLAALRELWQTREKICAAENLA 264 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEI-RFHGKTLLALVEKAQTLPEDALP 291 V+ L ++A +P ++S+ + R T A + ++ LP LP Sbjct: 265 PTKVLSNPALIALAVALPRGKRYMNSIEAFRNDRVGRERADTWYAALSRSYKLPVHELP 323 >UniRef50_D0WQH3 Putative ribonuclease D n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQH3_9ACTO Length = 411 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 128/292 (43%), Gaps = 14/292 (4%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD-W 63 + DDA+++L F A+DTE Y + ++Q+ +G LIDP+GI D Sbjct: 23 LDIDDAVSALGAGRGPF---AIDTERAMGIRYSGRAYVVQIRREGAGTFLIDPIGIEDRL 79 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL +L + LHA +DL L G P + DT++ G + V Sbjct: 80 GPLAELL--ATDVWILHAADQDLPC-LRELGFNPPEIFDTEVAGILLGF-ERISLQAEVA 135 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 E G L K S DW RPL YAA DV L+ + +L A+G L +EC Sbjct: 136 EVLGYGLAKEHSMADWSERPLAPELRAYAALDVELLIELRERLTAMLRAAGRLEWLHEEC 195 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRK--ARERDLAVNFVVRE 241 +++R + +P+ + R L L+ L WR R+ A+ERDLA V+ Sbjct: 196 EEIRLREPKTPSPQPWRKSARRNGMTDRRALGILESL--WRSREKLAKERDLAPEKVLPS 253 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFH-GKTLLALVEKAQTLPEDALPQ 292 + L +A P S ++ L S +R T + A +P++ LPQ Sbjct: 254 KVLAELASRKPRSHADVARSPLLQSRMRRKDAHTWWDAISSAWAVPKEELPQ 305 >UniRef50_B3DSL7 Ribonuclease D n=17 Tax=Bifidobacterium RepID=B3DSL7_BIFLD Length = 433 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 124/279 (44%), Gaps = 13/279 (4%) Query: 5 MITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT- 61 + +T D +C+A+ A ++A D E Y + LIQ +G +AL+DP+ +T Sbjct: 22 VTSTLDGYHRVCDAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTR 81 Query: 62 ---DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 DW+ + D T LH DL F + G P+ L DT+I A G +G Sbjct: 82 AGADWNEFNDAVGD--ATWILHDSLMDLPGFAEI-GLKPKALFDTEIAARLLGL-HRFGL 137 Query: 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 A++ E Y G+TL K S DW RPL YAA DV L+ + + + +A+G Sbjct: 138 AAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEW 197 Query: 179 ALDECRLMQMRRQEVVAPED-AWRDITNAWQLRT--RQLACLQLLADWRLRKARERDLAV 235 A +E + P W I+ QL R LA + L + R R AR+ D+A Sbjct: 198 AAEEFSHALVAGLAPRKPHPIPWLRISRITQLSRDPRGLAIAKSLWEERDRLARQYDIAP 257 Query: 236 NFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKT 274 + ++ + + A P + + +L +R H T Sbjct: 258 SLLLADSSIIEAATNKPHNAAQFRALRSLNERVRIHTGT 296 >UniRef50_Q31QF9 3'-5' exonuclease n=3 Tax=Synechococcus RepID=Q31QF9_SYNE7 Length = 211 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 59/172 (34%), Positives = 81/172 (47%), Gaps = 10/172 (5%) Query: 8 TDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSP 65 TD+ LA R PAIA+DTE + + +L L+QL D + + G T Sbjct: 16 TDELLAQ----YRQSPAIAIDTEAMGLNFHRDRLCLVQLCDSAGITTCVRIAQGQTVAPN 71 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVE 123 L+A+ DP ITK H D+ + G QP+ T+I + R S G S+++ Sbjct: 72 LQALCEDPQITKVFHFARFDITALKHGLGIAVQPIFCTKIASKL-ARTYSSQHGLKSLLQ 130 Query: 124 EYSGVTLDKSESRTDW-LARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174 E GV LDK+ +DW A L+ Q YA DV YLL AKL + G Sbjct: 131 ELVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREG 182 >UniRef50_C3ZLP6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZLP6_BRAFL Length = 832 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 113/260 (43%), Gaps = 10/260 (3%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 ++TT + L + + + A+D E R++ L+Q+ +H ++D L + D Sbjct: 275 LVTTLEELMDMNDKLTMCSEFAVDLEHHSYRSFQGFTCLMQVSTRDHDYIVDTLALRADL 334 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L DP + K H D++ FG + DT + G P A +++ Sbjct: 335 HVLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMFDTGQASHVLGLPR-HSLAYLLK 393 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE-----TEASGWLPA 178 Y V DK DW RPL +YA D YLL I + E + L Sbjct: 394 TYCDVEPDKKYQLADWRIRPLPSEMTQYAREDTHYLLHIYDCMRSELLDRGNNEANLLHN 453 Query: 179 ALDECRLMQMRR-QEVVAPEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLAV 235 L+ R + ++R Q+++ ED++ ++ N + ++QL ++L+ WR AR+ D + Sbjct: 454 TLERSRQVCLQRYQKLLYTEDSYLNLLNKHKKTFNSQQLHAVRLVYRWRDTIARQEDEST 513 Query: 236 NFVVREEHLWSVARYMPGSL 255 +V+ L +A +P + Sbjct: 514 GYVLPNHMLLVLAETLPKQI 533 >UniRef50_C5VCE9 Ribonuclease D n=2 Tax=Corynebacterium matruchotii RepID=C5VCE9_9CORY Length = 405 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 129/286 (45%), Gaps = 17/286 (5%) Query: 26 ALDTEFVRTRTYYPQLGLIQLFD-GEHLALID----PLGITDWSPLKAILRDPSITKFLH 80 A+DTE V Y+ ++ L+Q+ G LID P TD+ + +L D +H Sbjct: 37 AVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDF--MGRVLTDTGW--VVH 92 Query: 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWL 140 A + DL +L P L DT++ F G A+MVE Y GV L K+ DW Sbjct: 93 AATSDLP-YLEQLRLRPAQLFDTELAGRFLGF-HRVNLAAMVEHYLGVRLRKNHGGEDWS 150 Query: 141 ARPLTERQCEYAAADVWYLLPITAKLMVE-TEASGWLPAALDECRLMQMRRQEVVAPEDA 199 RP+ +YAA DV YLLP+ + E T+ S +EC + + + Sbjct: 151 RRPIPSEWLDYAALDVEYLLPLADAMRSELTQQSPKDEWVAEECDYLTRVYRGYSPTPKS 210 Query: 200 WRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 W D+ +LRT +QL + L R + A+ D AV+ ++ ++ L ++A +P ++ ++ Sbjct: 211 WEDLKGVRRLRTSKQLQVARWLWQVREKLAQASDTAVSRLLPDKTLVALATELPTTVPKV 270 Query: 259 DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 +R + V+KA + P+P +P YR Sbjct: 271 MKTTGYPPRLRRKARYWANQVDKALRTSRERWPEP----FPIPTYR 312 >UniRef50_UPI0001926123 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926123 Length = 758 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 110/265 (41%), Gaps = 20/265 (7%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI- 60 N I TD+ L L ++ IA+D E R++ L L+Q+ +ID L + Sbjct: 240 NLTYIDTDEGLNDLINKLKKVKEIAVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTLALR 299 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + + I DP+I K +H D+ FG + DT AA + A Sbjct: 300 EEMYKINEIFSDPNILKVMHGADSDIGWLQRDFGVYVVNMFDTG-QAARTLHEDRFSLAY 358 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI----TAKLMVETEASGWL 176 ++ +Y V K DW RP+ + YA D YLL + +L+ + A+ L Sbjct: 359 LLSKYCNVDAQKQYQLADWRIRPIPKEMILYAQEDTHYLLYVYDILRNQLLNKGNANKNL 418 Query: 177 -----PAALDECRLMQMR----RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 + C M + +A + +R +L +QL C +LL +WR + Sbjct: 419 LKSVYSKSTSICATMYQKPLFNNDSYIATYEKYR-----GRLNPQQLECFRLLFEWRDKT 473 Query: 228 ARERDLAVNFVVREEHLWSVARYMP 252 ARE D ++ + + L+ +A +P Sbjct: 474 AREEDESIVYTLPNHMLFQIAENLP 498 >UniRef50_Q6NGV4 Putative ribonuclease n=1 Tax=Corynebacterium diphtheriae RepID=Q6NGV4_CORDI Length = 407 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 108/233 (46%), Gaps = 10/233 (4%) Query: 25 IALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLG---ITDWSPLKAILRDPSITKFLH 80 A+DTE Y + L+Q+ +G LIDP + K I P I +H Sbjct: 36 FAIDTERAGAYRYDDRAYLLQIRREGSGTVLIDPEANRRLVTSVLGKVINNQPWI---IH 92 Query: 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWL 140 A + DL L+ G P + DT++ G P ASM+EE VTL K+ DW Sbjct: 93 AAATDLPC-LSELGFYPSTIFDTELAGRLAGLPRV-NLASMLEERLEVTLKKAHGAEDWS 150 Query: 141 ARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAW 200 RPL YAA DV L+P+ + + EA G L EC + + + +W Sbjct: 151 RRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGKLEWHKQECAHLINTSSHGLDTQRSW 210 Query: 201 RDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 +DI +L R RQL + L + R +AR ++ +V+ ++ ++ L SVA+ P Sbjct: 211 QDIKGVSRLTRPRQLVVAEALWELRDDEARMKNTSVSRLLPDKVLISVAQRPP 263 >UniRef50_Q17951 Protein C14A4.4a, confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q17951_CAEEL Length = 876 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 12/260 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW- 63 MI T + L +L + + + A+D E + R+Y LIQ+ + +IDP I D Sbjct: 280 MIDTKEKLEALTKTLNSVKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHV 339 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L +P I K H D+ +G L DT + P + A + Sbjct: 340 GMLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLFDTYVAMKKLKYP-KFSLAYLTL 398 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE-------TEASGWL 176 ++ V LDK DW ARPL YA D YLL + ++ E + + Sbjct: 399 RFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLL-YSYDMLREQLLKQDTKDLANVY 457 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 + D C +++ ++ V P+ +I + L TRQ L L WR AR D + + Sbjct: 458 SESSDLC--IKVYKKPVFNPKGYLTEIKFRFTLNTRQDYALTHLFKWRDVVARAEDESPH 515 Query: 237 FVVREEHLWSVARYMPGSLG 256 FV+ + S++ +P +G Sbjct: 516 FVLPNHMMLSLSETLPRDVG 535 >UniRef50_D2NTT8 Ribonuclease D n=2 Tax=Rothia mucilaginosa RepID=D2NTT8_9MICC Length = 449 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 94/347 (27%), Positives = 143/347 (41%), Gaps = 20/347 (5%) Query: 5 MITTDDALASLCEAVRAFPA-IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 +ITT+ L E + A +A+DTE + Y + L+QL + L LIDP D Sbjct: 66 LITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAFKDL 125 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + L D +HA +D L++ G P L DT++ A G + VE Sbjct: 126 RIINDALADAEWV--IHAAIQDFPS-LDMLGMRPNRLFDTELGARLAGLERV-NLGATVE 181 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 E G L K S+ DW RPL E YA DV L+ + L G L AL+E Sbjct: 182 ELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEEF 241 Query: 184 RLMQMRRQEVVAPEDA---WRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNFVV 239 + + V P D WR LR+ +QL L+ L R AR++D+ ++ Sbjct: 242 EYLC--KTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLL 299 Query: 240 REEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQ--------TLPEDAL 290 + + AR MP ++ + ++ G +R G + + A TLP A Sbjct: 300 PDSAIVEAARTMPRNVPAVMAIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAP 359 Query: 291 PQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQL 337 P P F ++ I ++SE I A+ L + + +L Sbjct: 360 PPLKAWESKRPENLALFTEVRQAIDELSEELTIPAQNLITTDYVRRL 406 >UniRef50_Q16D56 3'-5' exonuclease family protein, putative n=10 Tax=Alphaproteobacteria RepID=Q16D56_ROSDO Length = 248 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 5/161 (3%) Query: 23 PAIALDTEFVRTRTYYPQLGLIQLFDGE---HLALIDPLGITDWSPLKAILRDPSITKFL 79 P +A+D E + + +L ++QL G+ HL I G T+ L +L DP + K Sbjct: 62 PMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAK-GQTEAPNLCKLLEDPKVLKLF 120 Query: 80 HAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS-WGFASMVEEYSGVTLDKSESRTD 138 H G D+ LN FG P+ T+I + G A +++E + + K + +D Sbjct: 121 HFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKLLQELLAIDISKQQQSSD 180 Query: 139 WLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 W A LT+ Q EYAA+DV YL + L E G + A Sbjct: 181 WGAETLTDAQIEYAASDVLYLHQLREALNKMLEREGRMETA 221 >UniRef50_A9WRA0 Ribonuclease D n=5 Tax=Actinomycetales RepID=A9WRA0_RENSM Length = 480 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 115/255 (45%), Gaps = 21/255 (8%) Query: 26 ALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 +D E Y + L+Q+ +G LIDP D + L + LHA S+ Sbjct: 104 GVDAERASGFRYGQRAFLVQIRREGAGTWLIDPEPFDDLKIIDDALN--GVEWILHAASQ 161 Query: 85 DLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPL 144 DL L+ G P L DT++ A G P G A++VE+ G L K S DW RPL Sbjct: 162 DLPC-LSELGMWPSALFDTELAARIAGLPKV-GLAAVVEQLLGFGLAKEHSAADWSTRPL 219 Query: 145 TERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPE----DAW 200 E YAA DV L + +L+ EA G L A E + + P D W Sbjct: 220 PEPWLRYAALDVEVLAELREELIELLEADGKLEWATQEFQAIL-----AAGPPPPRIDPW 274 Query: 201 RDITNAWQLRTR-QLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELD 259 R + QLR R QLA ++ L R A+ RD+A ++ + L + AR MP ++ +L Sbjct: 275 RRTSGVHQLRDRKQLAAVRQLWLERDALAQNRDVAPGRLLPDSALVAAARAMPDTVPQL- 333 Query: 260 SLGLSGSEIRFHGKT 274 LG G FHG+ Sbjct: 334 -LGTPG----FHGRA 343 >UniRef50_A9LLI8 RRP6-like protein 3 n=5 Tax=rosids RepID=A9LLI8_ARATH Length = 892 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 89/219 (40%), Gaps = 19/219 (8%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Y + T+ L L E + A+DTE R++ LIQ+ E L+D + + Sbjct: 118 SYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALH 177 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L+ + DP+I K H D+ F + DT +P A Sbjct: 178 DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQR-SLAY 236 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E GV +K R DW RPL+E YA D YLL I L E Sbjct: 237 LLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTE----------- 285 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQL 219 L Q+ ++ +P+D + + A R + CLQL Sbjct: 286 ----LKQLATEDSSSPDDRFHFLLEAS--RRSNMTCLQL 318 >UniRef50_UPI000185C37F ribonuclease D n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C37F Length = 433 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 85/350 (24%), Positives = 145/350 (41%), Gaps = 23/350 (6%) Query: 9 DDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLGITDWSPLK 67 DD + + + + +A+DTE Y + L+Q G LIDP D Sbjct: 29 DDIIDAGEQLAKGHGWLAVDTERASAYRYDDRAFLLQFRRRGAGTFLIDP---EDGRKAM 85 Query: 68 AILRDP--SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 A+ ++T +HA DL L G P +IDT++ G A++ E Sbjct: 86 AVFGSSVNNLTWIIHAAHSDLPC-LAALGLYPTKVIDTELAGRLLGLERV-NLAALTERL 143 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASGWLPAALDE 182 GV L K R DW RPL +YAA DV L+ + L + E + WL + Sbjct: 144 LGVGLAKGHGREDWSTRPLPADWLDYAALDVELLIELAEVLCQALTELDRLEWLEQECER 203 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + + + +W+ + +LRT QL + L R A++RD++ V+ Sbjct: 204 ELAINRKYLDGLHVGHSWQGLKGIGKLRTPEQLHVARALWTERDEIAQQRDVSPTHVMGH 263 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML-NLMDM 300 L ++A +PG+ EL ++ R L +V +A+ P + P+P + +M Sbjct: 264 SVLRTIAEQLPGTQRELTAIRGFPRRRRGAADAWLKVVNEARQEPRSSWPKPQKPSRNEM 323 Query: 301 PGYRK----------AFKAIKSLITDVSETHKISAELLASRRQINQLLNW 340 P +R+ F+ + I +V + + L + Q +L+ W Sbjct: 324 PHFRRWAEHAPQAAEIFETTRDCIDNVCAQIHLRKDTLITSAQTRELVWW 373 >UniRef50_Q75CB2 ACL001Cp n=2 Tax=Saccharomycetaceae RepID=Q75CB2_ASHGO Length = 745 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 18/290 (6%) Query: 10 DALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKA 68 ++L+ + + ++ +A+D E R+YY + L+Q+ L+D + + D L Sbjct: 220 ESLSQMLDELKEVKELAVDLEHHDYRSYYGIVCLMQISSRSKDWLVDTIALRDDLHVLNV 279 Query: 69 ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGV 128 IL DP++ K H D+ G L DT + G P A ++E ++ Sbjct: 280 ILPDPTVVKVFHGAFMDMIWLQRDLGLYVVSLFDTYHASRALGFP-KHSLAYLLETFAKF 338 Query: 129 TLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQM 188 K DW RPL + +YA +D +LL I L +G L L+ R + Sbjct: 339 KTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSIYDDLRNALVKAGKLAEVLNASRNVAK 398 Query: 189 RRQE------------VVAP---EDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDL 233 RR E V +P + WR + + L + L+ L +WR AR D Sbjct: 399 RRFEYTSFRPRIPDSNVYSPIESTEPWRKLMYQYNLPPSKEPLLKKLYEWRDTVARRDDE 458 Query: 234 AVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEKA 282 +V +V+ + L S+ P + S+ ++ +R + +TL L+++ Sbjct: 459 SVRYVMPNQLLVSLVSLSPSETAGVLSVSTYVTDYVRSNARTLANLIKRT 508 >UniRef50_A0DUC4 Chromosome undetermined scaffold_64, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0DUC4_PARTE Length = 529 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 25/223 (11%) Query: 24 AIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGS 83 A +D EF R + LIQ+ DG+ + L DP+ + ++ ++ +I K ++G+ Sbjct: 16 AFGIDIEFSNNR-----ICLIQISDGKEIYLFDPIALNLEQYMREFFKNDAI-KIFYSGA 69 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESR----TDW 139 +DL+ N + + D ++LA + ++ ++Y GV ++ + + +DW Sbjct: 70 QDLKWLKNEYQIVVNNYCDLKVLAQ---KEPDLSLIALWKKYCGVQFEREDKKRLQKSDW 126 Query: 140 LARPLTERQCEYAAADVWYLLPITAKLMV----ETEASGWLPAALDECRLMQMRR----- 190 ARPLTE Q YAA D YL+ + L+ E + S L E +L++ + Sbjct: 127 FARPLTEEQLFYAALDCKYLVVLREILLQQYTEEEQKSIHFSTDLKEPKLLRYLKKQLAD 186 Query: 191 -QEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERD 232 Q+V+ P+ +R I +T L + L+ +L K +D Sbjct: 187 NQDVLLPQKIYRHIKFQEPFQTDDLKVIGLIE--QLTKKHHQD 227 >UniRef50_C5FLQ1 Ribosomal RNA processing 3'-5' exonuclease n=1 Tax=Microsporum canis CBS 113480 RepID=C5FLQ1_NANOT Length = 810 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 124/292 (42%), Gaps = 17/292 (5%) Query: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--TDWS 64 T +D A L E +A IA+D E Y+ + L+Q+ E ++D L Sbjct: 251 TMEDVHAMLAELKKA-KEIAVDLEHHDAHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQ 309 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + DPSI K LH S D+ G L DT A+ P ++++ Sbjct: 310 VLNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASMLQLPKK-SLKFLLQQ 368 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE-TEASG-----WLPA 178 Y G DK DW RPL +YA +D +LL I +L E EASG ++ Sbjct: 369 YVGFDADKQYQTADWRIRPLLPGMLDYARSDTHFLLYIFDRLRNELIEASGRDAIEYVLE 428 Query: 179 ALDECRLMQMRRQEVVA----PEDAWRD-ITNAWQLRTR-QLACLQLLADWRLRKARERD 232 EC L + R + W D ++N+ L TR Q A + L +WR + AR D Sbjct: 429 RSKECALQRYERPTYDSLRGRGNGGWHDMLSNSPVLLTREQFAVFRALHEWRDKTARTDD 488 Query: 233 LAVNFVVREEHLWSVARYMP-GSLGELDSLGLSGSEIRFHGKTLLALVEKAQ 283 + V+ + L+ +A+ MP L + +R + + AL+ KA+ Sbjct: 489 ESTQTVLSKRSLFRIAQEMPVDKFAVLQLASPVSASLRSRTEEVAALIAKAK 540 >UniRef50_A7AVN6 Exosome component 10, putative n=1 Tax=Babesia bovis RepID=A7AVN6_BABBO Length = 879 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 11/169 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 +++ T + L S+ ++ +A+D E T++Y + L+Q+ + +IDP I D Sbjct: 317 KLVQTLEELESMITLLKKCSIVAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIFDE 376 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDT----QILAAFCGRPMSWG 117 W L + DP I K +H D+ FG L DT +L CG +S Sbjct: 377 MWR-LNDVTTDPRILKVMHGAESDILWLQRDFGVYVVNLFDTLKAADVLCLSCGHSLS-- 433 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 S+V + G+ LDKS DW RP+ YA AD YLL + + L Sbjct: 434 --SLVRHFLGIHLDKSYQLADWRIRPIPRDMLTYATADTHYLLDLYSAL 480 >UniRef50_Q09BY7 3'-5' exonuclease, putative n=2 Tax=Cystobacterineae RepID=Q09BY7_STIAU Length = 379 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 84/317 (26%), Positives = 134/317 (42%), Gaps = 19/317 (5%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKAILRDPSITKFLHAGS 83 +A+D E + +L +Q+ + L D L D S L ++ DP TK+ HA Sbjct: 20 LAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGVDASLLAPLMADPERTKYFHAAQ 79 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 DL+ FL G + L DT A G P G A + E GV L K ++D+ RP Sbjct: 80 GDLQ-FLAEAGIRVRGLFDTHRAATLLGWP-KVGLADIARERLGVELPKEHQQSDFSLRP 137 Query: 144 LTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDI 203 L EY A DV YL + ++ +G L L +C M +E VA D D Sbjct: 138 LPPEMREYIANDVRYLCELGRQVREACRTAGILEEVLLDCDRMC---EEAVARPDVGADF 194 Query: 204 T--------NAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSL 255 + QL T A L RL A + ++ + ++ + +A +P + Sbjct: 195 KPKLPRSGLSPVQL-TLAHAVAHALHTKRLEWAEKANVPMGRMLSNMAIGDIAVKLPANP 253 Query: 256 GEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM---PGYRKAFKAIK 311 EL + G+ G +R HG+ LA+V + L +P D RK +A+K Sbjct: 254 KELARAAGVRGGFVREHGEETLAIVRELLELSRKGELKPGREAKDSARDAHRRKREEALK 313 Query: 312 SLITDVSETHKISAELL 328 + ++ + K++ ++ Sbjct: 314 AFRSEKAAARKVTPSVV 330 >UniRef50_Q241P8 3'-5' exonuclease family protein n=2 Tax=Eukaryota RepID=Q241P8_TETTH Length = 722 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 10/227 (4%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y +I T + L L + + +DTE +TY L LIQ+ ++ LID LGI Sbjct: 25 YILIDTLNKLQDLIPILLEQTRLGIDTEQSFAKTYEGFLCLIQISTDQNDYLIDVLGINS 84 Query: 63 WSPLKAILRD----PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 + L I K +AG +D+ F D + A+F + Sbjct: 85 KQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFDLSVVNYFDVKECASFLKKSDDNSL 144 Query: 119 ASMVEEYSGVTLDKSESR----TDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174 +++ Y LDK + + ++W RPL++ Q +YAA D YL+ I +L+ ET S Sbjct: 145 IQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLDYAALDSHYLIKIRYELLCETIQSV 204 Query: 175 WLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLA 221 ++ + QM++Q + E D + L +Q +L A Sbjct: 205 GFKRTIE--VINQMQQQTLKKYEKKKFDYQYFFDLFQKQFKHQELYA 249 >UniRef50_Q7QBT6 AGAP002300-PA n=3 Tax=Culicidae RepID=Q7QBT6_ANOGA Length = 969 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 75/288 (26%), Positives = 119/288 (41%), Gaps = 8/288 (2%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 + + LA L ++A IA+D E R+Y L+QL ++D L + D Sbjct: 271 VDQESQLAELVRELQAAKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDYIVDALALRDELH 330 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + DP K LH D+E G + DT AA + G +++ Sbjct: 331 VLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDTG-EAARVLQFSRIGLQFLLKH 389 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE--TEASGWLPAALDE 182 Y + DK+ DW RP+ E EYA D YLL I ++ E + L D+ Sbjct: 390 YCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYIYDRMRNELLEKGESLLQTVYDK 449 Query: 183 CRLM-QMRRQEVVAPEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 M + R Q+ ED +I + + RQ+ + + WR + AR D + +V+ Sbjct: 450 STFMCKQRYQKPTMNEDTVMNIYRRSRYVFDHRQMYAFREVLYWRDQIARLEDESPGYVL 509 Query: 240 REEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 + +A +P + G + S +R H L +V KA+ LP Sbjct: 510 PQHMALDIASKLPREMQGIIACCTPVPSLVRQHLHALHKIVLKARELP 557 >UniRef50_Q55641 Ribonuclease D n=50 Tax=Cyanobacteria RepID=Q55641_SYNY3 Length = 217 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 4/156 (2%) Query: 15 LCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD--GEHLALIDPLGITDWSPLKAILRD 72 +C+ + A +A+DTE + + +L L+Q+ D G AL G + L ++ D Sbjct: 21 VCQQLLACKEVAVDTETMGLNPHRDRLCLVQICDPEGNVTALRIAKGQEEAPNLTRLMED 80 Query: 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW-GFASMVEEYSGVTLD 131 P ITK H D + F P+ T+I + S G ++V+E GV LD Sbjct: 81 PGITKIFHFARFDTAQLKHTFDIKTYPIFCTKIASKIARTYTSHHGLKTLVQELVGVELD 140 Query: 132 KSESRTDW-LARPLTERQCEYAAADVWYLLPITAKL 166 KS +DW A L++ Q YAA DV YL+P+ KL Sbjct: 141 KSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKL 176 >UniRef50_D0LTA5 3'-5' exonuclease n=2 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTA5_HALO1 Length = 925 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 5/161 (3%) Query: 11 ALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAIL 70 AL C A+ P + LD E T + L L+QL E+ +ID + D P+ +L Sbjct: 764 ALEQACAALLGEPRVGLDVE---TTLFDRALCLVQLAAPEYTVVIDARAVDDLGPVSELL 820 Query: 71 RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM--SWGFASMVEEYSGV 128 ++ K +H + VF + ++ ++ GR G ++ G Sbjct: 821 ASRAVVKIIHNAQFERSVFRKLGMDIENVFDTLKVSRRLRGRKREGGHGLGAVCARELGR 880 Query: 129 TLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 LDK E R+DW RPLT+RQ +YAA D LL + + E Sbjct: 881 ELDKHEQRSDWTLRPLTQRQLDYAALDAEVLLVLHERFTRE 921 >UniRef50_C2CWJ0 Ribonuclease III n=3 Tax=Bifidobacteriaceae RepID=C2CWJ0_GARVA Length = 481 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 74/278 (26%), Positives = 119/278 (42%), Gaps = 15/278 (5%) Query: 4 QMITTDDALASLCEAVRAFPA-IALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGI- 60 ++I T +A C + A +A D E Y + LIQ G + L+DP+ + Sbjct: 41 EVIDTLEAYKEYCNLLAAGSGPLAADAERASGFRYGHEDWLIQFKRKGAGIGLLDPIALG 100 Query: 61 ---TDWSPLKAILRD-PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 DW + D P I +H +DL F ++ G P+ L DT+I A GR + Sbjct: 101 KLGVDWHEFNEAVGDAPWI---IHDSMQDLPGFFDI-GLRPRALFDTEIAAKLLGRK-RF 155 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 G +S+ E Y G+TL K S DW RPL YAA DV L+ + + E + G L Sbjct: 156 GLSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMSGELKKQGKL 215 Query: 177 PAALDE-CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRK--ARERDL 233 A E L+ Q+ + W I++ L ++ + W+ R A + D+ Sbjct: 216 LWANQEFAHLLSKGAQKKSPHPNPWLRISHISVLMHDKVGLMIAKELWQKRDELACQYDI 275 Query: 234 AVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH 271 A ++ + + + P + E S+ + +R H Sbjct: 276 APTLLLSDAAIIEAGKRKPSNSREFRSIRILNERVRIH 313 >UniRef50_Q01780 Exosome component 10 n=55 Tax=Eumetazoa RepID=EXOSX_HUMAN Length = 885 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/261 (26%), Positives = 110/261 (42%), Gaps = 16/261 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 I++ D L L E + A+D E R++ L+Q+ +ID L + +D Sbjct: 289 HFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSD 348 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM- 121 L L DP+I K H D+E FG + DT A R ++ G S+ Sbjct: 349 MYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAA----RLLNLGRHSLD 404 Query: 122 --VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-EASGWLPA 178 ++ Y V +K DW RPL E YA D YLL I K+ +E E P Sbjct: 405 HLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPV 464 Query: 179 ALDEC--RLMQMRRQEVVAP---EDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARER 231 L R + ++ + P ++++ ++ L T+QL QLL WR + AR Sbjct: 465 QLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARRE 524 Query: 232 DLAVNFVVREEHLWSVARYMP 252 D + +V+ + +A +P Sbjct: 525 DESYGYVLPNHMMLKIAEELP 545 >UniRef50_C7MCA5 Ribonuclease D n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCA5_BRAFD Length = 399 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 73/244 (29%), Positives = 110/244 (45%), Gaps = 15/244 (6%) Query: 16 CEAVRAFP--AIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGITDWSPLKAILRD 72 CEA + P +A+D E + Y + L+QL + ALIDPL T + L+++L + Sbjct: 31 CEAAASAPEEPVAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAFTMPATLRSLLAE 90 Query: 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDK 132 LHA +DL + G P L DT++ A G G ++VE+ G+ L K Sbjct: 91 REW--VLHAAGQDLPSLAEI-GLEPGGLFDTELAARLLGMERV-GLGAVVEDTLGLRLAK 146 Query: 133 SESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASGWLPAALDECRLMQMR 189 S DW RPL E YAA DV L+ + L + E W + R+ Sbjct: 147 EHSAADWSRRPLPEGWLTYAALDVEVLVEVRDVLRERLREACKEDWARQEFEHERV---- 202 Query: 190 RQEVVAPEDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 R+ +WR + LRT RQLA + + R A DL+ + V+++ L + A Sbjct: 203 REHGPTRSSSWRGLHGLGGLRTPRQLAAAREMWQRRDEIAAGEDLSPHRVIKDRDLVAGA 262 Query: 249 RYMP 252 + P Sbjct: 263 KEAP 266 >UniRef50_A6G563 Ribonuclease D, putative n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G563_9DELT Length = 386 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 80/294 (27%), Positives = 120/294 (40%), Gaps = 23/294 (7%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 + + TD L +L + +R +ALD+E Y ++ L+QL L L+D L + Sbjct: 6 EHSWVRTDAELTALAQRMRDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALA 65 Query: 62 DWSP---------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR 112 S L L PS+ ++H G D+ FG L DTQ A+F G Sbjct: 66 GDSGEPRAEALAALAEPLASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLGW 125 Query: 113 PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 + G+A++VE L K+ + DW RP+ + YA DV +L + +L A Sbjct: 126 SRT-GYAAVVEAVCEQKLPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELEARIGA 184 Query: 173 SGWLPAALDE-------CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRL 225 A LDE + P W+ + A L +L L + WR Sbjct: 185 -----ADLDEELAIANASVAAAPAHRSAFDPSRMWK-LKGARDLPAERLPVLAAIYRWRE 238 Query: 226 RKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALV 279 K RE D ++ E L +AR P L + L I+ HG+ LLA + Sbjct: 239 DKGRELDHPPGRLIANEPLVHLARRAPRDAAALKRMRLRRGFIQSHGEGLLAAI 292 >UniRef50_B6DTH8 Exosome subunit Rrp6P n=1 Tax=Bodo saltans RepID=B6DTH8_9EUGL Length = 741 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 68/266 (25%), Positives = 111/266 (41%), Gaps = 14/266 (5%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 + T + L +L A+ A +A+D E R++ L+QL ++D L + + Sbjct: 221 FVETVEGLDALIAALSACREVAVDLEHHDFRSFQGITCLMQLSTRSEDYIVDVLRLRSHM 280 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L + D +I K H ED+ FG + DT I P S FA V+ Sbjct: 281 HRLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMFDTGIALQTLHMPHSLAFA--VD 338 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAK-----LMVETEAS--GWL 176 + GV LDK DW RP+ YA D YLL + + L E AS L Sbjct: 339 HFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLLYVHDRLKALLLHAEGRASVGNLL 398 Query: 177 PAALDECRLMQMRRQE--VVAPEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARERD 232 + R + + R E ++ + +R+ L QL L+++ +WR + AR+ D Sbjct: 399 VHVYQDSRRLCLTRYEKPMLDVDTTYREAMGKSLGGLSATQLEVLRVVFNWRDQAARDAD 458 Query: 233 LAVNFVVREEHLWSVARYMPGSLGEL 258 + ++ + +A +P S E+ Sbjct: 459 ESPPAIMHASAILQIASKLPTSAKEI 484 >UniRef50_D1I5Y8 Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=3 Tax=rosids RepID=D1I5Y8_VITVI Length = 935 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 85/219 (38%), Gaps = 19/219 (8%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Y + T+ L L + + A+DTE R++ LIQ+ L+D + + Sbjct: 112 SYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIALH 171 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L+ + +PSI K H D+ F L DT +P A Sbjct: 172 DTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSKPQK-SLAY 230 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E Y GV +K R DW RPL+ EYA D YLL I L+ E Sbjct: 231 LLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAE----------- 279 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQL 219 L Q + P+D R + A R CLQL Sbjct: 280 ----LRQHDSENSCCPDDKLRFVLEAS--RRSNTVCLQL 312 >UniRef50_A9V5N1 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V5N1_MONBE Length = 837 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 34/274 (12%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWS 64 + T +AL L E +++ +A+D E RTY L+QL LID L + D Sbjct: 269 VGTREALVGLIERLKSVSELAIDLEAHSYRTYQGFTCLMQLSTRSEDYLIDTLALRDDLK 328 Query: 65 PLKAILRDPSITKFLHAGSEDLE--------VFLNVF--GELPQPLIDTQILAAFCGRPM 114 L I DP+I K LH D+ +N+F G+ T++L F + Sbjct: 329 LLNVIFADPAILKVLHGADSDILWLQRDHSLYIVNMFDTGQA------TRVLN-FPRHSL 381 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE----- 169 +W +++ Y DK DW RPL+E YA D +LL I +L E Sbjct: 382 AW----LLQHYCNFKADKKYQLADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQG 437 Query: 170 TEASGWLPAALDECRLMQMRRQEV-----VAPEDAWRDITNAWQLRTRQLACLQLLADWR 224 E + L A + + ++R E EDA ++ + L + L WR Sbjct: 438 NEQANLLRAVYQRSKELCLQRYEKPFYSQATAEDALNRMSRS--LVPSAVELFMALHAWR 495 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 + AR+ D + +V+ + L +A P G++ Sbjct: 496 DQVARDEDESPRYVLPDHMLLELASRAPTETGQI 529 >UniRef50_C9SGG4 3'-5' exonuclease domain-containing protein n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SGG4_VERA1 Length = 894 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 104/265 (39%), Gaps = 24/265 (9%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP----LKAILRDPSITKFLH 80 IA+D E TRTY L L+Q+ + ++D L W L + +P I K H Sbjct: 290 IAVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTL--KPWRHQLEVLNEVFTNPKIVKVFH 347 Query: 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWL 140 D++ G L DT A G P A +++ + DK DW Sbjct: 348 GAHMDMQWLQRDLGLYINGLFDTFFAAEILGYPQR-SLAYLLKRFVDFDADKKYQMADWR 406 Query: 141 ARPLTERQCEYAAADVWYLLPITAKLMVE--------TEASGWLPAALDECRLMQMRRQE 192 RPL E YA +D YLL I ++ E + + L + + + + R E Sbjct: 407 IRPLPEEMFYYARSDTHYLLYIFDRIRNELLDASDRSKPETDIIQQVLQKSKELSLSRYE 466 Query: 193 VV--APED-----AWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + PE W + N L +Q A + + WR AR D + +V+ Sbjct: 467 GLDFDPETGHGSRGWYGVLLKNPMPLSGKQFAAYRAIWKWRDDTARRLDESTGYVLPNAA 526 Query: 244 LWSVARYMPGSLGELDSLGLSGSEI 268 + +AR+MP L SL S S I Sbjct: 527 IAEIARHMPPDAKALHSLIHSNSII 551 >UniRef50_UPI0001C360F5 hypothetical protein ChatD1_13164 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C360F5 Length = 626 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 8/168 (4%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLG 59 + +++I+ L V+ P +A+DTE + +L LIQ+ G + +ID Sbjct: 48 VEFRIISQPSDLTPYFHTVKEAPLLAIDTETTGLDPHSDRLRLIQISAPGIPVLVIDCAA 107 Query: 60 I--TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAF---CGRPM 114 ++ LK +L PS K H DL+ FL G P+ DT + A CG P+ Sbjct: 108 FLPDGFACLKELLNTPS-EKIFHNARFDLQ-FLMGIGIDCFPVFDTMLAAQLLRPCGGPL 165 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162 G A + + Y G+ LDK+E W + LT Q YAA D W LL + Sbjct: 166 KAGLAVVADHYLGIKLDKTEQTGSWDSASLTGSQLAYAALDAWILLKL 213 >UniRef50_UPI000180BF09 PREDICTED: similar to exosome component 10 n=1 Tax=Ciona intestinalis RepID=UPI000180BF09 Length = 669 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/269 (22%), Positives = 115/269 (42%), Gaps = 21/269 (7%) Query: 10 DALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKA 68 + L L ++ IA+D E R+Y L+QL + ++D L + + + L Sbjct: 124 NGLNMLIRELKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRANLNILNQ 183 Query: 69 ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS--MVEEYS 126 + +P I K H +D++ FG L DT R + G + +++ Y Sbjct: 184 VFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDT----GQAARVLELGLSREYLLKHYC 239 Query: 127 GVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI----TAKLMVETEASGWLPAALDE 182 V DK + DW RPL++ +YA D YLL I L+ + G + + Sbjct: 240 KVESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAGGVGLMHKVIGN 299 Query: 183 CRLMQMRRQEVVAPEDAWR--------DITNAWQLRTRQLACLQLLADWRLRKARERDLA 234 R + + + E + +D W+ ++L L+L+ WR AR++D + Sbjct: 300 SRDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWE--PQELEALRLIYMWRDELARQKDES 357 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSLGL 263 +++ + L +A+ +P ++ ++ G+ Sbjct: 358 CGYIMPNKMLVQIAKTLPQTVQDVRLQGV 386 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 16/156 (10%) Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE-TEASG----- 174 +++ Y V DK + DW RPL++ +YA D YLL I + ++ E +G Sbjct: 449 LLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHYLLYIYDMMKLDLLEKAGDAKLM 508 Query: 175 --WLPAALDECRLMQMRRQEVVAPEDAWRDI--TNAWQLRT---RQLACLQLLADWRLRK 227 + + D C L + ++++ + + R + A ++ ++L L+L+ WR + Sbjct: 509 RKVIGNSRDICLL---KYEKLIIDDTSHRKLLRKGAGKIEDWEPQELEALRLIYMWRDKL 565 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGL 263 AR+ D + +V+ + L +A+ MP + +L G+ Sbjct: 566 ARQMDESCGYVLPNKLLVQIAKTMPQTEQDLRLQGV 601 >UniRef50_Q10146 Exosome complex exonuclease rrp6 n=1 Tax=Schizosaccharomyces pombe RepID=RRP6_SCHPO Length = 777 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/299 (22%), Positives = 131/299 (43%), Gaps = 20/299 (6%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 ++T+ L+ + + ++ IA+D E R++ + L+Q+ + E ++D L + + Sbjct: 221 VSTESQLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELE 280 Query: 66 L-KAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 + +P+I K H + D+ FG L DT G G A ++++ Sbjct: 281 ALNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFE-GHGLAFLLQK 339 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE------TEASGWLPA 178 Y DK DW RPL +YA +D YLL I L E + + Sbjct: 340 YCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLMQS 399 Query: 179 ALDECRLMQMRRQEVVAPE-------DAWRDITNAW---QLRTRQ-LACLQLLADWRLRK 227 + + + +R+ E+ + D WR++ + ++ R+ L + L DWR Sbjct: 400 VFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSV 459 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQTL 285 AR+ D +V +V+ L ++A P ++ S+ + I R + + ++ +V++A+ L Sbjct: 460 ARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDIVKVVQEAEKL 518 >UniRef50_A3GG05 Ribosomal RNA processing 3'-5' exonuclease n=8 Tax=Saccharomycetales RepID=A3GG05_PICST Length = 792 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 127/310 (40%), Gaps = 30/310 (9%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWS 64 + T + L + E ++ IA+D E R+YY + L+Q+ + + +ID L + D Sbjct: 236 VDTVEELQKMVEELKKSSEIAVDLEHHDYRSYYGIVCLMQISNRDQDWIIDTLALRDDLE 295 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + +P I K H D+ G L DT + G P + A ++E Sbjct: 296 CLNTVFTNPHIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKSLGFP-KFSLAYLLET 354 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--WLPAALDE 182 ++ K DW RPL+ YA +D +LL I +L + +G L L + Sbjct: 355 FAHFKTSKKYQLADWRIRPLSPPMMAYARSDTHFLLSIFDQLKNKLIDAGNEKLQRVLFD 414 Query: 183 CRLMQMRRQEVV--------------------APEDAWRDITNAWQLRTRQLACLQLLAD 222 R + RR E P + + I + + + + + ++ L + Sbjct: 415 SRQVAKRRFEYTPFRPLTNNINSRVSCPVMASNPREPFSSIMVQYNVPSHKKSVVEALYN 474 Query: 223 WRLRKARERDLAVNFVVREEHLWSVAR-YMPGSLGELDSLGLS---GSEIRFHGKTLLAL 278 WR R A+ D +V FV+ + L ++A P + ++ LG S +R + K + L Sbjct: 475 WRDRIAKIEDESVRFVMPNQLLVNLANLNQPVDVAKV--LGASHFVSEHVRLNAKEVAEL 532 Query: 279 VEKAQTLPED 288 +E L D Sbjct: 533 LENTLKLASD 542 >UniRef50_B2VXT5 Exosome complex exonuclease Rrp n=2 Tax=Pleosporineae RepID=B2VXT5_PYRTR Length = 786 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 21/299 (7%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--TD 62 ++ T +ALA++ ++ IA+D E RTY + L+Q+ + ++D L Sbjct: 207 LVDTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRRK 266 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + DPSI K LH D+ G L DT A G + A ++ Sbjct: 267 LECLNEVFADPSILKVLHGAFMDIVWLQRDLGLYIVGLFDTFHAARALGY-QAASLAYLL 325 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE--------TEASG 174 E + K DW RPL++ EYA AD +LL I + E Sbjct: 326 ELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFDNMRNELVNKSDFSNPEKN 385 Query: 175 WLPAALDECRLMQMRRQEVVAPEDAWRDITNAW---------QLRTRQLACLQLLADWRL 225 + L + ++R E + T W Q +Q + + + +WR Sbjct: 386 KVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISRTPVQFTRQQFSVFRAVHEWRD 445 Query: 226 RKARERDLAVNFVVREEHLWSVARYMPGS-LGELDSLGLSGSEIRFHGKTLLALVEKAQ 283 R+ D + F++ ++SVAR MP + +G +++ G R H L+ +V +A+ Sbjct: 446 TLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNAIQHVGHITRAHADELVGVVAEAK 504 >UniRef50_Q55AW0 3'-5' exonuclease n=1 Tax=Dictyostelium discoideum RepID=Q55AW0_DICDI Length = 1195 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 126/321 (39%), Gaps = 34/321 (10%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-T 61 + + T L L E + IA+D E RTY L+Q+ LID L + + Sbjct: 246 FTWVETVRQLEELVEKLIHCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDTLLLRS 305 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +PSI K LH D++ FG + DT + P S A + Sbjct: 306 HIHMLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYP-SASLAFL 364 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG------- 174 ++ Y + +K DW R L E +YA D YLL I +L E + G Sbjct: 365 LKFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKGNKNLGSS 424 Query: 175 -----------------WLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTR----Q 213 L L R + + R E +D I A +L + Q Sbjct: 425 GTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDDN-SHINFAKKLNLQYSPTQ 483 Query: 214 LACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHG 272 L L++L WR AR+ D +V +++ + + ++ P S+ EL +L I+ H Sbjct: 484 LNVLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSVQELLTLCSPIPPSIKQHS 543 Query: 273 KTLLALVEKAQTLPEDALPQP 293 L+ + KA+ ED QP Sbjct: 544 HQLIQEILKARI--EDPSKQP 562 >UniRef50_Q8T0Z8 PM-Scl autoantigen-like protein n=1 Tax=Bombyx mori RepID=Q8T0Z8_BOMMO Length = 451 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 74/275 (26%), Positives = 115/275 (41%), Gaps = 19/275 (6%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTY---YPQLG---LIQLFDGEHLA-LI 55 + I + L L E + A IA+D E R Y LG LIQ+ E +I Sbjct: 119 FTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRDLSGLYLILGITCLIQISTDEGGDFII 178 Query: 56 DPLGITDW-SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP- 113 D L + + L + DP K H D+ FG L DT A G P Sbjct: 179 DALAVREHIHKLNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPA 238 Query: 114 MSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL---PITAKLMVET 170 +S F M +Y GV DK+ DW RPL + +YA D YLL + ++E Sbjct: 239 LSLKFLLM--KYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEK 296 Query: 171 EA--SGWLPAALDECR--LMQMRRQEVVAPEDAW-RDITNAWQLRTRQLACLQLLADWRL 225 A + L + ++ R +EV+ E I + +Q+A L++L WR Sbjct: 297 NAGQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRD 356 Query: 226 RKARERDLAVNFVVREEHLWSVARYMPGSLGELDS 260 +AR+ D + +++ L S++ +P L +++ Sbjct: 357 SQARQLDESTTYLLPNHMLLSLSENLPRELQGVNA 391 >UniRef50_A9LLI7 RRP6-like protein 2 n=6 Tax=rosids RepID=A9LLI7_ARATH Length = 870 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 106/261 (40%), Gaps = 16/261 (6%) Query: 12 LASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALID--PLGITDWSPLKAI 69 L L +R+ A+D E + R++ L+Q+ ++D L I L+ I Sbjct: 269 LKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREI 328 Query: 70 LRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDT-QILAAFCGRPMSWGFASMVEEYSGV 128 +DP K +H D+ FG L DT Q S F +++ + GV Sbjct: 329 FKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLERNSLEF--LLQHFCGV 386 Query: 129 TLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQM 188 T +K DW RPL E YA D YLL I + +E + A D L Sbjct: 387 TANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHTDSPLLEVY 446 Query: 189 RRQEVVA---------PEDAWRDITN--AWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 +R V E+++ + A QLA + L +WR AR D + + Sbjct: 447 KRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQLAIVAGLCEWRDFIARAEDESTGY 506 Query: 238 VVREEHLWSVARYMPGSLGEL 258 V+ + L +A+ MP S+G+L Sbjct: 507 VLPNKVLLEIAKEMPDSVGKL 527 >UniRef50_B8C5L5 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C5L5_THAPS Length = 181 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 72/150 (48%), Gaps = 6/150 (4%) Query: 25 IALDTEFVRTRTYYPQLGLIQL---FDGEHLALIDPLGITDWSP--LKAILRDPSITKFL 79 IALD E RT+ + LIQL + LID L + P L IL +P+I K + Sbjct: 31 IALDLEAHSHRTFAGFVCLIQLSIHISSGYDFLIDALSLRHVIPTCLGPILANPNILKVM 90 Query: 80 HAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDW 139 H D+ FG L DT A+ + S G A ++ +Y+G+ DK+ +DW Sbjct: 91 HGADSDIPWLQRDFGCYVVNLFDTG-RASRALKFQSAGLAFLLRKYAGLDPDKAHQLSDW 149 Query: 140 LARPLTERQCEYAAADVWYLLPITAKLMVE 169 RPL + YA AD YLL I KL +E Sbjct: 150 RRRPLPDDMRTYAVADTRYLLDIYDKLRLE 179 >UniRef50_A5DAB2 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DAB2_PICGU Length = 755 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 23/256 (8%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 + T+ L+ + + + IA+D E R+Y + L+Q+ E +ID L + D Sbjct: 228 VETESDLSQMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQISSREKDWIIDTLKLRDSLV 287 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L I +P+I K H D+ G L DT + G P + A ++E Sbjct: 288 VLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKLGLPR-FSLAYLLEN 346 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW--LPAALDE 182 Y+ K DW RPL+ YA +D +LL + +L + +SG + L E Sbjct: 347 YANFKTSKKYQLADWRMRPLSGPMLSYARSDTHFLLYVYDQLRNQLLSSGSQKMKEVLHE 406 Query: 183 CRLMQMRRQE-----------------VVAP--EDAWRDITNAWQLRTRQLACLQLLADW 223 R + RR E ++AP ++ + I N + L ++ L W Sbjct: 407 SRQVAKRRFEFTRFRPTSVSGSKVSCPIMAPNAKEPYSSIMNQFNLPNHTRPIVEALYLW 466 Query: 224 RLRKARERDLAVNFVV 239 R KA+E D +V +V+ Sbjct: 467 RDAKAKECDESVRYVM 482 >UniRef50_UPI000180BC5E PREDICTED: similar to exosome component 10, partial n=1 Tax=Ciona intestinalis RepID=UPI000180BC5E Length = 647 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 101/255 (39%), Gaps = 13/255 (5%) Query: 10 DALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKA 68 +AL L + ++ IA+D E R+Y L+QL ++D + + + + L Sbjct: 71 NALHKLMDELKEASEIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRAELNILNQ 130 Query: 69 ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGV 128 + +P+I K H D+ FG L DT A G ++ Y V Sbjct: 131 VFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDTGQAARALGL-QRHSLDYLLTHYCNV 189 Query: 129 TLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASGWLPAALDECRL 185 DK DW RPL + YA D YLL + + +V+T G L +D+ R Sbjct: 190 QADKKYQLADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKTGDPGLLHKVIDKSRD 249 Query: 186 MQMRRQEVVAPEDAWRDI--------TNAWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 + + E D + R +Q+ L+L+ WR AR+ D + + Sbjct: 250 ICCLKYEKPITNDTSHLVLLEKHKRRGGKKDFRPQQIEALRLIFAWRDGLARQEDESCGY 309 Query: 238 VVREEHLWSVARYMP 252 V+ L +A +P Sbjct: 310 VLPNHMLLQIAEILP 324 >UniRef50_Q3YR08 3'-5' exonuclease n=4 Tax=Bacteria RepID=Q3YR08_EHRCJ Length = 216 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 6/172 (3%) Query: 24 AIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITDWSPLKAILRDPSITKFLHAG 82 A+A+DTE + +L L+QL D ++ L+ G L ++L DP+I K H Sbjct: 31 AVAIDTETMGLVCRRDRLCLVQLADSSGNVHLVKFSGNYQAPNLVSVLSDPNIIKIFHFA 90 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW-GFASMVEEYSGVTLDKSESRTDWLA 141 D+ V G P T+I + G + E GV L+K + +DW Sbjct: 91 RFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKELCYELLGVKLNKMQQSSDWGR 150 Query: 142 RPLTERQCEYAAADVWYLLPITAKL--MVETEASGWLPAALDECRLMQMRRQ 191 LT Q YAA+DV YL + +KL M++ E L AA + +Q R Q Sbjct: 151 ESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKRELAAAC--FKFLQTRAQ 200 >UniRef50_A6R753 Predicted protein n=4 Tax=cellular organisms RepID=A6R753_AJECN Length = 807 Score = 64.3 bits (155), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 129/303 (42%), Gaps = 28/303 (9%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--TD 62 + T + + S+ ++ IA+D E +Y+ + L+QL + ++D L + Sbjct: 231 FVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQLSTRDKDWIVDTLKPWREE 290 Query: 63 WSPLKAILRDPSITKFLHAGSEDL-----EVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 L + DP I K LH + D+ ++ L + G L DT A P Sbjct: 291 LQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVG-----LFDTYHAAVALNYPKK-S 344 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVE--TEA 172 ++E++ +K DW RPL +YA +D YLL I + ++E T + Sbjct: 345 LKFLLEKFVNFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNDLIEHSTPS 404 Query: 173 SGWLPAALDECRLMQMRRQE--VVAPED-----AWRD--ITNAWQLRTRQLACLQLLADW 223 + + L+ + ++R E V E WRD + N+ Q A + + W Sbjct: 405 NNLIDYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLVRNSTLFSREQFAVFRAVHQW 464 Query: 224 RLRKARERDLAVNFVVREEHLWSVARYMP-GSLGELDSLGLSGSEIRFHGKTLLALVEKA 282 R + AR D V +V+ ++ L+ +A MP + L ++ +R L+ +++KA Sbjct: 465 RDKIARFEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQVIKKA 524 Query: 283 QTL 285 + + Sbjct: 525 KII 527 >UniRef50_A2R7H4 Contig An16c0130, complete genome n=16 Tax=Eurotiomycetidae RepID=A2R7H4_ASPNC Length = 782 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 77/302 (25%), Positives = 127/302 (42%), Gaps = 30/302 (9%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--TD 62 + T + + + E ++A IA+D E +Y + L+Q+ + ++D L + Sbjct: 230 FVDTLEGVKEMLEELKAAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREE 289 Query: 63 WSPLKAILRDPSITKFLHAGSEDL-----EVFLNVFGELPQPLIDTQILAAFCGRPM-SW 116 L + DP+I K LH S D+ ++ L V G + DT A P S Sbjct: 290 LQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVG-----MFDTYHAACALNYPKRSL 344 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 F +++++ DK DW RP+ E +YA +D YLL I + E + Sbjct: 345 KF--LLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYDHIRNELVENSLP 402 Query: 177 PAALDECRLMQMRRQEVVAPE----DA--------WRDI--TNAWQLRTRQLACLQLLAD 222 L + L Q +++ + E DA W D+ N+ + Q A + + Sbjct: 403 DNNLIDYVLEQSKKEALQVYERPVYDAATGQGPGGWYDLLSRNSVVVNREQFAVFKAVHQ 462 Query: 223 WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEK 281 WR ARE D V V + L+ VA MP LG L +L ++ LL +++K Sbjct: 463 WRDEVAREEDEGVQCVFPKHVLFRVAHTMPLDLGTLFRTLSPVTPIVQNRAVDLLEVIKK 522 Query: 282 AQ 283 A+ Sbjct: 523 AK 524 >UniRef50_C5X9Z8 Putative uncharacterized protein Sb02g034580 n=1 Tax=Sorghum bicolor RepID=C5X9Z8_SORBI Length = 760 Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 69/277 (24%), Positives = 108/277 (38%), Gaps = 33/277 (11%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y + T+ L L + A A+DTE R++ L+Q+ LID + + D Sbjct: 13 YNWVDTEAQLEHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNDDYLIDTIALHD 72 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L+ + + SI K H D+ F + DT +P A + Sbjct: 73 VMGILRPVFANSSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACETLSKPQK-SLAYL 131 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 +E Y VT DK+ R DW RPLT EYA D YLL I L E A ++ D Sbjct: 132 LEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSS-D 190 Query: 182 ECRL------------MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQL---------- 219 + MQ+ +E+ P A ++A + +R L L Sbjct: 191 KINFFFEASHRSNMVCMQLYAKEIECPPGA----SSAASILSRNLQTHGLDSKKSSEVKD 246 Query: 220 ----LADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 WR AR D ++ +V+ ++ + ++A +P Sbjct: 247 LVWKFCAWRDLMARMHDESLRYVLSDQAIAALAVSLP 283 >UniRef50_O67779 DNA polymerase I n=4 Tax=Aquificaceae RepID=DPO1_AQUAE Length = 574 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+++ +T ++ L + + P + LDTE R + L+Q+ D E+ +ID I Sbjct: 1 MDFEYVTGEEGLKKAIKRLENSPYLYLDTETTGDR-----IRLVQIGDEENTYVIDLYEI 55 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D PL+ ++ + I H DL+ +L +G P DT I + G Sbjct: 56 QDIEPLRKLINERGIVG--HNLKFDLK-YLYRYGIFPSATFDTMIASYLLGYE-RHSLNH 111 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 +V G ++DKS +DW A L++ Q +YAA DV L + K+ Sbjct: 112 IVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKM 157 >UniRef50_B6K2U5 Exosome complex exonuclease RRP6 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K2U5_SCHJY Length = 782 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 19/271 (7%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 + ++L S+ E ++ IA+D E R+Y + L+Q+ ++D L + + Sbjct: 220 VDNSESLHSMLEELKQATEIAVDLEHHDYRSYSGFVCLMQISTRNQDWIVDTLELREELE 279 Query: 66 LKAIL-RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 I+ DP I K LH + D+ FG L DT G G A ++++ Sbjct: 280 CLNIVFTDPKIIKVLHGATMDVIWLQRDFGLYLVGLFDTYYATKALGF-EGHGLAFLLKK 338 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE-TEASG--------W 175 Y DK DW RPL + +YA +D +LL + L VE E S + Sbjct: 339 YCQFEADKRYQMADWRIRPLPKEMLKYAQSDTHFLLYVFDCLRVELLEQSSRRKEDLMQY 398 Query: 176 LPAALDECRLMQMRRQ---EVVA-PEDAWRDITNAW---QLRTRQ-LACLQLLADWRLRK 227 + + D+ L + R+ E+ D WR + W ++ R+ LA + L WR + Sbjct: 399 VVKSSDDVALRRYEREAYDEIYGLGTDGWRHVLTKWGSSKIIGREALAVFKSLHRWRDQV 458 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 AR D +V +V+ L +A MP +L Sbjct: 459 ARNEDESVRYVMPNHLLVKLAASMPSDPSDL 489 >UniRef50_B0EQ49 Exosome complex exonuclease RRP6, putative n=2 Tax=Entamoeba RepID=B0EQ49_ENTDI Length = 517 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 13/299 (4%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 + T + L + ++ A+D E +YY + L+Q+ +ID + + D + Sbjct: 190 VNTLELLQEMIISLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITLRDSIT 249 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS---WGFASM 121 L +P+I K H D+ FG ID + C R + + + Sbjct: 250 LLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCID----SGQCARALKLQHFSLKYL 305 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 +++Y V DK DW RPLT+ EYA D YLL I +L E G L L+ Sbjct: 306 LQKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIIDQLRNECIDVGILEEVLN 365 Query: 182 ECRLMQMR--RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 + + +R R V + + R +W ++ Q + L R + AR D + ++ Sbjct: 366 KSNELCLRLFRPTVCSDDVIERVARRSW-IKKTQFDTFKKLYLLRDKIARIEDESPESII 424 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSE--IRFHGKTLLALVEKAQTLPEDALPQPMLN 296 L ++ +P L +L L + H + L ++ + + L Q N Sbjct: 425 NMTMLSNIVNELPTDLEKLRLCCLPKVPYFVEMHASEFILLTKQEHQIKLNQLQQIQTN 483 >UniRef50_A9RMT7 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RMT7_PHYPA Length = 824 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 26/272 (9%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWS 64 + T L +L + ++ I +D E R++ + LIQ+ L+D + + D Sbjct: 69 VQTRSQLEALVDVLKGEKEIGVDIEHHHVRSFRGFIPLIQISTYSTDYLVDAIALHDDMH 128 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L I +P+I K H D F L DT G+P A +++ Sbjct: 129 LLHPIFANPAILKIFHGADNDSLWLQRDFHIYIVNLFDTARACDVLGKPQR-SLAYLLQL 187 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y GV+ K R+DW RPL YA D YLL I + + P+ L++ + Sbjct: 188 YCGVSTKKIYQRSDWRVRPLPAEMEIYARTDAHYLLYIAQCMRANLVQACNTPSLLNDNQ 247 Query: 185 LM--QMRRQEVVAPE----DAWRDITNA--------------WQLRTRQLACL----QLL 220 L+ +RR V + + D ++A +R + A L Q L Sbjct: 248 LLLEVVRRSNAVCQQLYEKEGVGDSSSAVVASILGRLYNNSNSAMRGEEDAYLRRLVQKL 307 Query: 221 ADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 +WR AR D ++ FV+ + L +VA+ P Sbjct: 308 VEWRDALARAEDESLRFVMSDAALLAVAKERP 339 >UniRef50_Q7S5A8 Related to nucleolar 100K polymyositis-scleroderma protein n=3 Tax=Sordariales RepID=Q7S5A8_NEUCR Length = 822 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 144/353 (40%), Gaps = 32/353 (9%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW-- 63 + T + + + E ++ IALD E R+Y L L+Q+ E +ID L W Sbjct: 231 VDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTL--QPWRH 288 Query: 64 --SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP-MSWGFAS 120 L + +P+I K LH D+ G L DT A G P S G+ Sbjct: 289 KLEVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGRSLGY-- 346 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASG--- 174 ++ +++ DK DW RPL E YA +D YLL I + +VE G Sbjct: 347 LLSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVERSTPGKPK 406 Query: 175 --WLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQ---------LRTRQLACLQLLADW 223 L L+ + + ++R E ++ W Q A + + W Sbjct: 407 PDLLEQVLERSKDVALQRYENLSYNVETGQGPRGWYNVLLKSPTLYNGEQFAVYKAVHQW 466 Query: 224 RLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEKA 282 R AR D + F + ++ L +AR +P L S+ S ++ ++ H L +++KA Sbjct: 467 RDNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDDLFDVIQKA 526 Query: 283 QTLPEDALPQP-MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQI 334 + E+ + P M+++ A I ++I D S+ + EL A R Q Sbjct: 527 R---EEGVNGPKMMDIFKSESSILAPAKIAAVIADDSDIPDVK-ELKADRSQF 575 >UniRef50_B3DN45 LD13130p (Fragment) n=14 Tax=Drosophila RepID=B3DN45_DROME Length = 930 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 75/301 (24%), Positives = 123/301 (40%), Gaps = 30/301 (9%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 ++ T + L E +R P IA+D E RT+ L+Q+ + D L + D Sbjct: 303 VVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDM 362 Query: 64 SPLKAILRDPSITKFLHAGSEDLE--------VFLNVFGELPQPLIDTQILAAFCGRPMS 115 L +L DP K LH D+E +N+F DT AA Sbjct: 363 HILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMF--------DTH-RAAKALNMAR 413 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI----TAKLMVETE 171 A +++ Y + +DKS DW RPL ++ +YA D +L+ + T L+ + Sbjct: 414 LSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQHA 473 Query: 172 ASGWLPAALDECRLMQMRR--QEVVAPE---DAWRDITNAWQLRTRQLACLQLLADWRLR 226 G L + + + +R + + PE D R ++ RQL L+ + +WR Sbjct: 474 EPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFD--NRQLYALRGIFEWRDA 531 Query: 227 KARERDLAVNFVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTL 285 AR D + +V+ + +A +P + G L +R TL +V KA+ Sbjct: 532 TARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLKARDQ 591 Query: 286 P 286 P Sbjct: 592 P 592 >UniRef50_A0EBI7 Chromosome undetermined scaffold_88, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0EBI7_PARTE Length = 676 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 70/172 (40%), Gaps = 13/172 (7%) Query: 5 MITTDDALASLCEAVR------AFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL 58 MIT D L L ++ F IA+D E +Y LIQL +IDP Sbjct: 194 MITNADHLGELVLKIQQEVDQNGFSEIAVDLEHNHQISYLGITCLIQLSTRSQDYIIDPF 253 Query: 59 GITDWSPL----KAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM 114 + W L I +P I K H D++ FG L DT A+ + M Sbjct: 254 PL--WKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDT-FHASKELQLM 310 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 F ++ EY + DK+ DW RPL + +YA D YLL I ++ Sbjct: 311 QNSFQFLLSEYCKKSTDKTYQTADWTQRPLPDEMIKYAQIDTHYLLYIYDRM 362 >UniRef50_UPI0001BC2C11 putative ribonuclease D n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C11 Length = 384 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 102/385 (26%), Positives = 162/385 (42%), Gaps = 26/385 (6%) Query: 5 MITTDDALASLC-EAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 ++ T +S C E + IA+D E Y + L+QL L+D + D Sbjct: 11 LVDTPAEFSSACAELAQGSGPIAIDAERASGIRYDQRAFLVQLRRANAGTYLLDSEVLAD 70 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 SPL +H+ ++DL L G P+ L DT++ A G +G A++ Sbjct: 71 LSPLNDAF--AGAEWVIHSVTQDLPC-LQERGMQPEVLFDTELAARMLGWE-KFGLAAVA 126 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE-TEASGWLPAALD 181 E GV L K S DW RPL + YAA DV LLPI L EA W A + Sbjct: 127 ERTLGVRLAKEHSAADWSKRPLPKEWLNYAALDVEVLLPIRDILHEALIEADKWEFARQE 186 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQ-LACLQLLADWRLRKARERDLAVNFVVR 240 L+ + + P WR +L++R+ +A ++ L R A E D+A + ++R Sbjct: 187 FEHLLDFQPKHFTEP---WRRTHGLTKLKSRKDIAKVRELWTSRDEMAAESDIAPSRILR 243 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L ++A+ S ++ + S R + L KA L + L P M Sbjct: 244 DRDLVALAQSRVQSSDDIMATWPKLS--RANSGRLYRAFRKATRLTTEEL--PARKEMHA 299 Query: 301 PGYRKAF---------KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 R F A+K+ + ++SE H I ++L + I + L ++ + L Sbjct: 300 TQSRSPFSHTDIKDRVSALKAAMAELSEEHTIPHDVLL-QPAIVKALGAQSRVNVEEFLF 358 Query: 352 EL-ISGWRGELMAEALHNLLQEYPQ 375 E W+ EL A L + L+ P+ Sbjct: 359 ERGARRWQVELSAPVLRSTLESLPR 383 >UniRef50_B0DUK1 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0DUK1_LACBS Length = 854 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 78/319 (24%), Positives = 118/319 (36%), Gaps = 46/319 (14%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 I+T D L ++ ++ IA+D E R+Y L L+Q+ D E+ ++D L + D Sbjct: 245 ISTPDELQAMLAKLKKATEIAVDLEHHSYRSYTGFLCLMQISDRENDWIVDLLALRDEIE 304 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L I DP I K LH D+ F L DT + P G A+++E Sbjct: 305 QLNEIFTDPKIVKVLHGAESDVVWLQQDFNVYIVNLFDTFHASKLLDFPR-HGLANLLEM 363 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL-----------------M 167 Y DK DW RPL + +YA +D +LL I L Sbjct: 364 YCDYIPDKRYQLADWRIRPLPQEMLDYARSDTHFLLFIYDNLRNALLDRSRSRSSSPSSS 423 Query: 168 VETEASGWLPAALDECRLMQMRRQEVVAPEDA--------WRDITNAWQ----------- 208 + L L +R V P DA W + W Sbjct: 424 SQKPQHALLTQVLTRSAETSLRVY-VKEPYDAADGSGPGGWDTLAKKWNKGALMAGGPGV 482 Query: 209 -LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE 267 + Q + WR R ARE D + + + ++L+ +A P + L LG+ S Sbjct: 483 GIGAMQREVYVRVHGWRERVAREEDESTRYTMPNQYLFQLAEQPPADMAAL--LGVFKSS 540 Query: 268 ----IRFHGKTLLALVEKA 282 +R K LL ++ + Sbjct: 541 VPALVRRRAKELLEVIREG 559 >UniRef50_C1E3A4 Predicted protein (Fragment) n=2 Tax=Mamiellales RepID=C1E3A4_9CHLO Length = 332 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 104/265 (39%), Gaps = 18/265 (6%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW- 63 + T +AL + + +A+D E R++ +IQ+ ++D L + Sbjct: 37 FVDTPEALEDMVAHLDKSNEMAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALELRGLI 96 Query: 64 -SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L ++ DP + K H D++ FG + DT A P S G A ++ Sbjct: 97 RDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYVVGMFDTGQAARVLELP-SKGLAYLL 155 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-------- 174 + Y V DK DW RPL+E YA D +LL + +L + +A G Sbjct: 156 DHYCSVKADKRFQLADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGDGSKPF 215 Query: 175 --WLPAALDECR--LMQMRRQEVVAP---EDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 + LD R + + V P +R +A L +LA L WR + Sbjct: 216 RDLIRTTLDRSRDVCATLYEKPVTHPLTYHADYRKNRDAGDLDLPRLAVYAALHGWRDER 275 Query: 228 ARERDLAVNFVVREEHLWSVARYMP 252 R D ++ +V+ + +AR P Sbjct: 276 CRAEDESIGYVMPRALMLRLAREAP 300 >UniRef50_A5DWN7 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DWN7_LODEL Length = 826 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 123/301 (40%), Gaps = 25/301 (8%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 + ++ L ++ E ++A IA+D E R+YY + L+Q+ + E +ID L + D S Sbjct: 234 VDNEEQLDAMIEELKAASEIAVDLEHHDYRSYYGLVCLMQISNREKDWVIDTLALRDELS 293 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L I + I K H D+ G L DT + G + +++ Sbjct: 294 KLNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRQLGF-AKFSLQYLLDT 352 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 ++ K DW RPL YA +D +LL I +L + L L E R Sbjct: 353 FAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFLLYIYDQLRNKLIDQDKLSKVLFELR 412 Query: 185 LMQMRRQEVVA---------------------PEDAWRDITNAWQLRTRQLACLQLLADW 223 + RR E P++ W I + + + + +++L + Sbjct: 413 QVAKRRFEYTKYRPLSNTPGNGQVSCPIMASNPKEPWGSIMYQYNVPSFKKHIVEVLYKY 472 Query: 224 RLRKARERDLAVNFVVREEHLWSVARY-MPGSLGELDSLGLSGSE-IRFHGKTLLALVEK 281 R ARE D +V +++ + L S++ P ++ + + SE +R H K + +L+ Sbjct: 473 RDAVAREEDESVRYIMPNQLLVSLSMLEAPVETEKVLNCHVYVSEHVRMHAKEIASLINL 532 Query: 282 A 282 A Sbjct: 533 A 533 >UniRef50_A6SCE7 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A6SCE7_BOTFB Length = 823 Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 110/276 (39%), Gaps = 33/276 (11%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--TD 62 + T + + + E ++ IA+D E TR+Y + L+Q+ E ++D L Sbjct: 225 FVDTYEGVLEMLEELKGATEIAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTLKPWRQQ 284 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILA---AFCGRPMSWGFA 119 L + DP+I K H D+ G L DT F G +++ Sbjct: 285 LQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACRRLGFAGGSLAF--- 341 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLM--------VETE 171 ++++Y DK DW RPL E YA AD +LL I L VET Sbjct: 342 -LLKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELLDAPDVET- 399 Query: 172 ASGWLPAALD---------ECRLMQMRRQ----EVVAPEDAWRDI--TNAWQLRTRQLAC 216 PAA E L++ RQ E W + L + Q + Sbjct: 400 PDAETPAATSMDIVLQKSKETSLLRYERQLYNAESGKGPGGWFSLIYKTPALLSSEQFSV 459 Query: 217 LQLLADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 + + WR + AR+ D ++NFV+ + ++A++MP Sbjct: 460 FKAVHAWRDQIARKDDDSINFVMSNSVVVNLAKFMP 495 >UniRef50_A4S626 Predicted protein (Fragment) n=3 Tax=Eukaryota RepID=A4S626_OSTLU Length = 176 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 3/165 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q++ T DAL L + A+D E R++ L+Q+ E ++D L + Sbjct: 8 QVVETVDALEELAAHLEECKEFAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLALRSH 67 Query: 64 --SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L D K +H D++ FG L DT A P S G A + Sbjct: 68 VRDALGKAFADADKLKVMHGADNDVQWLQKDFGMFVSCLFDTGQAARVLELP-SKGLAYL 126 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 + Y G+ +K DW RPLT+ EYA D +LL + +L Sbjct: 127 LHHYCGIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHDRL 171 >UniRef50_A7BCR3 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BCR3_9ACTO Length = 414 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 111/260 (42%), Gaps = 27/260 (10%) Query: 5 MITTDDALASLCEAVRAFPA-IALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 +I T L + A+ A IALD E + Y L+Q+ + LID + D Sbjct: 30 VIDTQKDLEAAARALSTGSAPIALDVERAQGFRYGSDPYLVQIRREDVGTFLIDTHALPD 89 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L+ + D LH +DL V G P L DT+I A G +G A++V Sbjct: 90 LSVLQPGVED---VWLLHDCLQDLPNLRQV-GLRPSTLFDTEIAARLIGL-ERFGLAAVV 144 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G+ L K +DW RPL + YAA DV L TE L LDE Sbjct: 145 EQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELL----------TELYYRLSKRLDE 194 Query: 183 CRLMQMRRQE------VVAP---EDAWRDITNAWQLRTRQ-LACLQLLADWRLRKARERD 232 + +QE V P D WR I A ++R+R+ LA L+ L + R AR D Sbjct: 195 MGRWEWAQQEFGYALSVTPPGPKPDRWRSIPGAGKIRSRRGLAVLKALWETRESIARRID 254 Query: 233 LAVNFVVREEHLWSVARYMP 252 L+ +VR L A P Sbjct: 255 LSPGRLVRNAALVRAASNPP 274 >UniRef50_Q1ARA6 DNA polymerase I n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ARA6_RUBXD Length = 582 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 5/180 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +++IT + L A+ + LD E ++ L+QL G ++D + D Sbjct: 8 FRLITGPEGLREAARALAGARRVGLDIEATGLSPLDARMRLLQLAAGGETFVVDVFEVKD 67 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG---RPMSWGFA 119 SPL+ L + K LH D L G PL DT + A + S+ Sbjct: 68 LSPLREALEGGPL-KVLHNAKYDYSFLLAQHGIRLSPLFDTMLAAQLLDGGEQGPSYSLE 126 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 ++ Y T+DK+ R DW ++ L+ Q EYAA D LLP+ +L E G P + Sbjct: 127 AVAGRYLQETVDKTARREDW-SKELSREQLEYAARDAAILLPLHERLQELLEREGLGPVS 185 >UniRef50_Q5CS61 RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain n=2 Tax=Cryptosporidium RepID=Q5CS61_CRYPV Length = 957 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 2/151 (1%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKAILR 71 +S+ E F +A+D E ++Y + LIQL H +IDP + + L + Sbjct: 293 SSMNEESSPF-LLAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFNEIQMLNELTA 351 Query: 72 DPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLD 131 +P I K LH D+ F + DT A P + +++ Y + +D Sbjct: 352 NPKILKVLHGSDYDIIWLQRDFSVYIVNMFDTGQAARILNTPGGYSLKNLLSIYCSLDID 411 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPI 162 K DW RPL+ EYA D YLL I Sbjct: 412 KRFQLADWRERPLSNELIEYARGDTHYLLYI 442 >UniRef50_B3E046 Ribonuclease D n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E046_METI4 Length = 324 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 9/298 (3%) Query: 43 LIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLID 102 ++ L G+HLA++D L D S L IL H DL++ P+ + D Sbjct: 1 MVSLCQGQHLAVVDCLK-DDLSALWDILSRSEW--ICHGMDYDLKMLRKAGCPQPRTIFD 57 Query: 103 TQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162 T I A CG + G+A +V + V L K + DW RPL Y A DV YL + Sbjct: 58 THIAAKLCGFE-AVGYARLVSLFFQVKLTKEHQKADWSRRPLPPSLINYTAKDVLYLEKL 116 Query: 163 TAKLMVETEASGWLPAALDECRLMQMR-RQEVVAPEDAWRDITNAWQLRTRQLACLQLLA 221 L ++ G C+ +Q + + W I +L + L L Sbjct: 117 KEILTRLLKSLGRWEWMEQSCKRIQRKIENSFLGSPKEWERIEGVHKLDFLGQSILFELQ 176 Query: 222 DWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVE 280 WR A RD +++ E L ++ ++ G + ++ + E G L A+ + Sbjct: 177 KWRKELALLRDTPPFKIIKSEDLVQIS-FISAHGGSIAAIPAVQRLEREVVGDLLKAIEK 235 Query: 281 KAQTLPEDALPQP-MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQL 337 Q P P L L D ++ F+ +K+ ++ I L+ASR ++++ Sbjct: 236 GKQNGSWKESPGPKKLFLFDKEAAKR-FEVLKNKRDKIASFLGIDPALIASRNLLSEM 292 >UniRef50_Q4UC54 3'-5' exonuclease, putative n=2 Tax=Theileria RepID=Q4UC54_THEAN Length = 790 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 11/179 (6%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++Y++I + ++ + ++ +++D E T TY + L+QL + +IDP I Sbjct: 475 IDYKLIDNESDFNAMLDKLKNSRILSMDVEHHDTETYRGFICLLQLSTPQENYIIDPFKI 534 Query: 61 -TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + L + DP I K +H D+ F L DT+ A P A Sbjct: 535 FGKMNKLNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDTREAAIVLNLP-EQSLA 593 Query: 120 SMVEEYSGVTLDKSESRTDWLA---------RPLTERQCEYAAADVWYLLPITAKLMVE 169 +V++Y + L+K ++W RPL + +YA D YL+P+ L E Sbjct: 594 KLVQKYFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDE 652 >UniRef50_Q0BUA3 Ribonuclease D n=208 Tax=Bacteria RepID=Q0BUA3_GRABC Length = 259 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 68/148 (45%), Gaps = 14/148 (9%) Query: 23 PAIALDTEFVRTRTYYPQLGLIQLFDGE---HLALIDP--LGI--TDWSPLKAILRDPSI 75 P IA+DTE + + +L LIQ+ G+ HL I P LG D LK +L +P Sbjct: 69 PIIAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQIVPERLGGKGADCPNLKRLLSNPGC 128 Query: 76 TKFLHAGSEDLEVFLNVFGELPQPLIDTQILA----AFCGRPMSWGFASMVEEYSGVTLD 131 K +H D+ + N G + T+I A F R G + + GV + Sbjct: 129 VKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLVRTFTDR---HGLKDLCRDLLGVEIS 185 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYL 159 K + +DW A LT Q YAA+DV YL Sbjct: 186 KQQQSSDWGAPELTPEQMAYAASDVLYL 213 >UniRef50_A0L4G0 3'-5' exonuclease n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4G0_MAGSM Length = 213 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 9/172 (5%) Query: 23 PAIALDTEFVRTRTYYPQLGLIQLFD--GEHLALIDPLGITDWSP--LKAILRDPSITKF 78 P +A+DTE + +L ++Q+ D GE + + I ++ LKA++ P + K Sbjct: 27 PFLAVDTETMGLDINRDRLCVVQMCDVTGE----VSVVQIRNYQAPRLKALMEAPEVEKI 82 Query: 79 LHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKSESRT 137 H DL +P+ T+I + S G + +E GV +DK + + Sbjct: 83 FHFARFDLATMKRWLDIEIKPVFCTKIASKLVRTYTGSHGLKDVSQELLGVVMDKQQQSS 142 Query: 138 DWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 DW A LT Q +YAA+DV +L+ I A+L+ G L A + R + R Sbjct: 143 DWGAEQLTPEQLQYAASDVIHLVEIRARLVEMLAREGRLQLADEIMRFLPTR 194 >UniRef50_B9I623 Predicted protein n=2 Tax=Malpighiales RepID=B9I623_POPTR Length = 858 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/295 (23%), Positives = 127/295 (43%), Gaps = 21/295 (7%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI- 60 +++++ L L +R A+D E + R++ L+Q+ ++D L + Sbjct: 232 SFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLR 291 Query: 61 TDWSP-LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 P L+ + +DP+ K +H D+ FG L DT A+ + Sbjct: 292 IHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDTG-QASRVLKLERNSLE 350 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPIT--------AKLMVETE 171 ++ + GVT +K DW RPL + YA D YLL I +K + Sbjct: 351 HLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLHIYDLMRALLLSKPIDNEN 410 Query: 172 ASGWL----PAALDECRLMQMRRQEVVAPEDAWRDITN--AWQLRTRQLACLQLLADWRL 225 A L + D C MQ+ +E+ E+++ ++ + +QLA + L +WR Sbjct: 411 ADPPLLEVYKRSYDVC--MQLYEKELFT-ENSYLNMYGLPSAGFNAQQLAIVAGLYEWRD 467 Query: 226 RKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALV 279 AR D + +++ + L +A+ MP ++ +L L S S I H ++++++ Sbjct: 468 AIARAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKSKHSYIERHLSSVVSII 522 >UniRef50_A4RDR3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4RDR3_MAGGR Length = 854 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 72/300 (24%), Positives = 117/300 (39%), Gaps = 25/300 (8%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 + T + + + E ++ IA+D E RTY+ L L+Q+ E ++D L W Sbjct: 260 VDTYEGVLEMLEDLKQAKEIAVDLEHHDFRTYHGLLSLMQISTREKDWIVDTL--KPWRQ 317 Query: 66 ----LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DPSI K H D+ G L DT A P S A + Sbjct: 318 QLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALMYP-SKSLAYL 376 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVETEASG---- 174 ++++ DK DW RPL E YA +D YLL + + ++ SG Sbjct: 377 LKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYDMMRNELLRQSVSGDPHR 436 Query: 175 -WLPAALDECRLMQMRRQEVVAPEDAWRDITNAW---------QLRTRQLACLQLLADWR 224 L L + ++R E + + W Q + + L WR Sbjct: 437 DLLERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRLPNTFSREQFSVYRALHKWR 496 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALVEKAQ 283 AR D + F++ + L +AR MP + +L L + G +R L+ L++ ++ Sbjct: 497 DDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNVGPPVRNAVDELVDLIQDSR 556 >UniRef50_A4IA84 Exosome subunit rrp6p homologue, putative n=3 Tax=Leishmania RepID=A4IA84_LEIIN Length = 743 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 14/240 (5%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKAILRDPSITKFLHAGS 83 IA+D E +Y L+Q+ E ++D L + + L + +PSI K LH Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKLRSSMGALAPVFLNPSILKVLHGAR 314 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 ED+ F DT + P S FA V+ + V L+K DW RP Sbjct: 315 EDIRWLQKDFSLYVVNFFDTGVALQTLHMPHSLAFA--VDHFCQVKLNKKYQTADWRVRP 372 Query: 144 LTERQCEYAAADVWYLLPITAK---LMVETEASGWLPAAL----DECR--LMQMRRQEVV 194 L+ YA D +LL + + L++ +E + + L +E + +Q+ + V Sbjct: 373 LSAEMVHYARQDTHFLLYVYDRLKALLLNSEGRASIGSLLVHVYNESKQLSLQIYEKPSV 432 Query: 195 APEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 PE+ ++ + L Q + + +WR ARE D + V+ + S+A +P Sbjct: 433 VPEETYKIALGRSLSGLNKVQEKVARDVFNWRDSAAREVDDSPTAVLHLSSVLSIASKLP 492 >UniRef50_C5KIT4 Ribonuclease D, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KIT4_9ALVE Length = 350 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 29/245 (11%) Query: 69 ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGV 128 I DP I K LH D++ + DT A + ++++ Y G Sbjct: 39 ITSDPGIVKVLHGADMDVQWLQRDLSAYLCNMFDTGQAARVLELGGGYSLKNLLDFYCGY 98 Query: 129 TLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM-- 186 DK+ DW RPL+ER +YA DV YLL I ++ + SG +D+ ++ Sbjct: 99 KADKANQLADWRQRPLSERMKQYARDDVHYLLYIYDRMRAQLLCSG---GGVDDGKVTAY 155 Query: 187 --QMRRQEVVAPED----AWRDITNAWQLRTRQLAC-------------LQLLADWRLRK 227 +M + + D ++D + + L+C L L WR + Sbjct: 156 GRKMYKSTINRSCDVALKTYKDADSDFMEHAITLSCKTNTPLSLVGRPMLAALMHWRDKL 215 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGEL-----DSLGLSGSEIRFHGKTLLALVEKA 282 R+RD+ N ++ + +A P + +L G ++R +LA+++ A Sbjct: 216 GRQRDVFPNSILTDRLALRIAMDEPVTREQLLRALGGGSGGVARQVRDRADEVLAVLQYA 275 Query: 283 QTLPE 287 T P+ Sbjct: 276 ATHPK 280 >UniRef50_D1ICW5 Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1ICW5_VITVI Length = 901 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 110/265 (41%), Gaps = 25/265 (9%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSP-LKAIL 70 A LC V F A+D E + R++ L+Q+ ++D L + P L+ + Sbjct: 230 AKLC-CVNEF---AVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVF 285 Query: 71 RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTL 130 +DP+ K +H D+ FG + DT A+ + ++ Y GVT Sbjct: 286 KDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTG-QASRVLKLERNSLEHLLHHYCGVTA 344 Query: 131 DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL------MVETEASGWL-----PAA 179 +K DW RPL YA D YLL I + M E E S L + Sbjct: 345 NKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLMRTQLLSMAELENSNALLLEVYKRS 404 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQ---LRTRQLACLQLLADWRLRKARERDLAVN 236 D C MQ+ +E++ D+ T Q +QLA + L +WR AR D + Sbjct: 405 FDIC--MQLYEKELLT--DSSYLYTYGLQGAHFNAQQLAIVAGLFEWRDVVARAEDESTG 460 Query: 237 FVVREEHLWSVARYMPGSLGELDSL 261 +++ + L +A+ MP + +L L Sbjct: 461 YILPNKTLLEIAKQMPVTTSKLRRL 485 >UniRef50_UPI000023ED22 hypothetical protein FG06049.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023ED22 Length = 807 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 105/277 (37%), Gaps = 26/277 (9%) Query: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW--- 63 T + L L E ++A IA+D E R+Y + L+Q+ E ++D L W Sbjct: 227 TYEGVLEMLGELMKA-KEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTL--QPWRHK 283 Query: 64 -SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +P I K H D+ G L DT P A ++ Sbjct: 284 LEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAK-SLAYLL 342 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-------- 174 ++ DK DW RPL + YA +D YLL I ++ E A+ Sbjct: 343 SKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAASDKTDADKD 402 Query: 175 WLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQ----------LRTRQLACLQLLADWR 224 + AL++ R + R E ++ + + W + Q + + L WR Sbjct: 403 LIGRALEKSREQSLSRYEHPDYDEETGEGSRGWSSYIFKNSHMAFDSEQFSVFRALWKWR 462 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL 261 AR+ D + NFV+ + +AR P L SL Sbjct: 463 DDTARKEDESTNFVLGNRDISEIARINPPDAKALHSL 499 >UniRef50_Q7XE52 Nucleolar protein, putative, expressed n=13 Tax=Magnoliophyta RepID=Q7XE52_ORYSJ Length = 902 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 11/258 (4%) Query: 11 ALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW--SPLKA 68 +L L +++ A+D E R++ L+Q+ ++D L + + L+ Sbjct: 269 SLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLKLRKYLGDYLRE 328 Query: 69 ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGV 128 I +DP+ K +H D+ FG L DT + + ++ + GV Sbjct: 329 IFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQMDRN-SLEHLLHHFCGV 387 Query: 129 TLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA--KLMVETEASGWLPAALDECR-- 184 T +K DW RPL + +YA D YLL I +L + E+S L+ + Sbjct: 388 TANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKESSDENDLLLEVYKRS 447 Query: 185 ---LMQMRRQEVVAPEDA-WRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +Q+ +E++ + + RQL+ L + WR AR D + +++ Sbjct: 448 KEICLQLYEKELLTHSSYLYIHGLKENEFDARQLSVLANIYKWRDSVARGEDESTGYILP 507 Query: 241 EEHLWSVARYMPGSLGEL 258 + L +A+ MP + G L Sbjct: 508 NKTLLEIAKQMPATTGRL 525 >UniRef50_B2AKX1 Predicted CDS Pa_5_9190 n=1 Tax=Podospora anserina RepID=B2AKX1_PODAN Length = 628 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 27/272 (9%) Query: 35 RTYYPQLGLIQLFDGEHLALIDPLGITDW----SPLKAILRDPSITKFLHAGSEDLEVFL 90 RTY L L+Q+ E ++D L W L + DP I K H D+ Sbjct: 40 RTYTGLLSLMQISTREKDWIVDTL--VPWRHRLEVLNEVFADPGIVKVFHGAFMDVVWLQ 97 Query: 91 NVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCE 150 G L DT + G A +++++ G DK DW RPL Sbjct: 98 RDLGVYVVGLFDTHHASTVLGYGGG-SLAFLLKKFVGFEADKRWQLADWRIRPLPAEMLY 156 Query: 151 YAAADVWYLLPITAKLMVETEASGW--------LPAALDECRLMQMRRQEVVAPED---- 198 YA AD YLL + + + A+ + + + + + R E A ++ Sbjct: 157 YARADTHYLLYVYDMIRNDLAAAAHTVHPDGKPIERVIAKSKKTALSRYENPAFDEETGL 216 Query: 199 ---AWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPG 253 W + +++ + A + L +WR + ARE D + FV++E + + R MP Sbjct: 217 GDRGWYNYLARSSYVYNKEEFAVFRALWNWRDKTAREEDESTGFVMKEHVMAEIVRVMPS 276 Query: 254 SLGELDSLGLSGSEIRFHGK--TLLALVEKAQ 283 L SL L G G+ L +V++ + Sbjct: 277 DKKALWSL-LDGHARNLKGRLDELFGVVQEGR 307 >UniRef50_C8NU72 Ribonuclease D n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NU72_9CORY Length = 394 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 115/271 (42%), Gaps = 19/271 (7%) Query: 1 MNYQMITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPL 58 M+Y+++ T D A + + A A+DTE Y + LIQ+ G L P Sbjct: 1 MHYELVHTPDGFARAAKQLAAGHGPFAVDTERASAYRYDDRAFLIQIHRRGAGTFLFQPE 60 Query: 59 GITDWSPLKAILRDPSITK---FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG--RP 113 G+ + L + L P++ +HA EDL L G P L DT + G +P Sbjct: 61 GLRE--ELTSALA-PAVNGEDWIIHAAPEDLPS-LAELGLHPGTLFDTALAGRIAGFEKP 116 Query: 114 MSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS 173 A+MV E+ GV L+K R DW L +YAA DV Y LP A+ E Sbjct: 117 ---NLAAMVAEFCGVELEKGHGREDWSLPTLPREWLDYAALDVIY-LPDLAEAQAELLGG 172 Query: 174 -GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKAR--E 230 G L A E + E AP W + L + L+ A W R A Sbjct: 173 LGKLDYAEQEFAHIVDTFAEWTAPTLTWEGLKGVNNLPS-ALSRAIARAVWEQRNADALR 231 Query: 231 RDLAVNFVVREEHLWSVARYMPGSLGELDSL 261 RD++ + ++ + + ++A+ P S +L ++ Sbjct: 232 RDISPSHILPSKLIIAIAKEQPRSPADLAAM 262 >UniRef50_A4RUV5 Predicted protein n=3 Tax=Ostreococcus RepID=A4RUV5_OSTLU Length = 497 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 22/183 (12%) Query: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP-----------L 66 +VR P + LD E+ R P + L+Q+ E + LID L S L Sbjct: 95 SVRTPPCLGLDAEW-RPGDNTP-VALLQIATREEVFLIDLLATAPRSAGESLNVATDELL 152 Query: 67 KAILRDPSITKFLHAGSEDLE------VFLNVFGELPQPLIDTQILAAFC---GRPMSWG 117 KA+L + K + + D++ L+V+ E + L+D + LA P+ G Sbjct: 153 KAVLWSEGVYKLGFSFAYDVKRMKASYSHLSVWEEKSRNLVDVKQLAYAAMPNKTPLRCG 212 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 A + + G LDK E +DW RPLTE Q YAAAD + L I K + E +P Sbjct: 213 LAVLTRQVIGCLLDKKEQCSDWGKRPLTESQMAYAAADGYSLCLIFDKCLTMIEDEAEIP 272 Query: 178 AAL 180 L Sbjct: 273 RVL 275 >UniRef50_D2VPJ2 3'-5' exonuclease and HRDC domain-containing protein n=1 Tax=Naegleria gruberi RepID=D2VPJ2_NAEGR Length = 956 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 73/306 (23%), Positives = 126/306 (41%), Gaps = 19/306 (6%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWS 64 I+T + L L + A A+D E R++ + L+Q+ LID L + Sbjct: 345 ISTVEDLHKLATILEGQDAFAIDLEQHSYRSFQGFVCLMQISTRSEDFLIDTLELRQHMH 404 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + P I K +H D+ F L DT P A +++ Sbjct: 405 ILNSSFTHPKIVKVMHGSDCDILWLQRDFAIYCVNLFDTGQACRTLALP-GCSLAYLLKH 463 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE--------TEASGW- 175 Y G+ DK DW RPL +YA D YLL I +L + + SG+ Sbjct: 464 YCGIDADKKYQLADWRVRPLPSEMVKYAREDTHYLLYIYDRLRQDIFNTKPNTSTVSGFE 523 Query: 176 -LPAALDECRLMQMRRQEV-VAPEDAWRDITNAWQLRTRQLA--CLQLLADWRLRKARER 231 + L + + MRR E + E ++ + + T ++ +++L WR AR+ Sbjct: 524 RMEEVLVRSKELCMRRYEKELFSETSYLSLIKFSRGCTASISENVIRVLFKWRDTVARKD 583 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEKA---QTLPE 287 D ++ +V+ + + S+A+ P + +L S + +R K ++ L+ KA + +PE Sbjct: 584 DESIRYVLPDHMILSIAQEAPTEVSQLLSCCNPVPKLVRRDAKIIVDLITKALQSRDMPE 643 Query: 288 DALPQP 293 P Sbjct: 644 PTFSTP 649 >UniRef50_B8PGQ0 Predicted protein n=2 Tax=Postia placenta Mad-698-R RepID=B8PGQ0_POSPM Length = 882 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 2/158 (1%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 + A +++ +R+ IA+D E+ RT+ + L+QL E ++D L + D Sbjct: 250 VADSTAFSAMLNKLRSAQEIAIDLEYHSYRTFGGFVCLMQLSTREEDWVVDTLAVRDEME 309 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + D I K LH D+ F L DT + P A+++E Sbjct: 310 ALNEVFTDSQIVKVLHGAESDIVWLQQDFNLYIVNLFDTYHASKVLDFPR-HSLATLLEM 368 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162 Y T DK DW RPL E YA +D +LL I Sbjct: 369 YCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLYI 406 >UniRef50_A9EXG4 Rnd protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EXG4_SORC5 Length = 403 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 13/186 (6%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF----DGEHLALIDPLGI 60 ++ + LA L E A+A+D E Y P+L +QL DG + ++D L + Sbjct: 8 LVEREGELARLIERAGRADALAVDVEANGLFVYRPRLCTVQLAFREGDGIAVGIVDALRV 67 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLI---DTQILAAFCGRPMSWG 117 +PL +L K LH DL + E PL DT + A G + G Sbjct: 68 P-VAPLARLLGAAGPPKVLH----DLTFDARMLAEAGAPLGGAHDTSVAARMLG-CAATG 121 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 +++ V +DK + DW RP+ + + Y A DV +LLP+ A+L + A G Sbjct: 122 LGALLLSELDVKVDKQLQQHDWGRRPIEDAELRYLADDVRHLLPLRARLAERSGALGIDE 181 Query: 178 AALDEC 183 +EC Sbjct: 182 EIEEEC 187 >UniRef50_C8NPA1 Ribonuclease D n=9 Tax=Corynebacterium RepID=C8NPA1_COREF Length = 407 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 24/266 (9%) Query: 78 FLHAGSEDLE--VFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSES 135 +HA + DL +L++ P L DT++ G + A+MVE+ + L K Sbjct: 90 IIHAAATDLPSLAWLDLH---PGTLFDTELAGRLAGFELV-NLAAMVEQIFDLHLLKGHG 145 Query: 136 RTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-EASGWLPAALDECRLMQMRRQEVV 194 DW RPL E YAA DV LL + A +M E + G L A E ++ + +V Sbjct: 146 AEDWSKRPLPEEWLNYAALDVEMLLEL-ADVMAEILDNQGKLDWAEQEFEHIRTQFADVT 204 Query: 195 -APEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 AP +W D+ L R QL + + R A RDLA V+ + + AR +P Sbjct: 205 EAPTLSWTDMKGVGTLKRPEQLVVAREMWMARDSIAAARDLAAGKVLSNKVIVETARTLP 264 Query: 253 GSLGELDSLGLSGSEIRFHG--KTLLALVEKAQTLPEDALPQPMLNLMDMPGYR------ 304 + G+L + G R G K + ++ +A P P+P +P R Sbjct: 265 RTFGDLAR--VKGFPGRNTGTVKRWMRVINRALASPRHTWPRPQPRPDGVPDRRYWSSFH 322 Query: 305 ----KAFKAIKSLITDVSETHKISAE 326 + + I++ I D+ I E Sbjct: 323 PEEYEILQGIRADIDDLGAELNIPGE 348 >UniRef50_D0MWN1 Exosome complex exonuclease RRP6-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWN1_PHYIN Length = 1465 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 113/283 (39%), Gaps = 40/283 (14%) Query: 3 YQMITTD-------DALASLCEAVRAFPA-----IALDTEFVRTRTYYPQLGLIQLFDGE 50 Y+MI D D+ +L + +++ A IA+D E R+Y L+Q+ + Sbjct: 234 YEMIGLDKVSYLWVDSEENLMQMMKSLTAAEARVIAVDLEHHSYRSYMGLTCLMQISTAQ 293 Query: 51 HLALIDPLGIT-DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAF 109 L+D L + L + DP K LH D+ G L DT A Sbjct: 294 EDFLVDTLALRGKLQTLNQVFCDPEKVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARL 353 Query: 110 CGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 P + A M++ + + DK DW RPL + +YA D YLL I +L E Sbjct: 354 LQYPR-FSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKE 412 Query: 170 TEASG------WLPAALDECRLMQMRRQEVVAP--EDA------------WRDITNAWQL 209 +G L L + ++ E P EDA RD++ L Sbjct: 413 LLQAGAKSRESLLFQTLQNSSKLCLQVYEKPQPTEEDALAVGEKLKGTVYLRDLS---AL 469 Query: 210 RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 + R + L L WR R AR+ D +V +V+ L + +++P Sbjct: 470 QKRVIVALYL---WRDRVARQEDESVAYVMPNHVLMKLTKHLP 509 >UniRef50_Q4JVB6 Rnd protein n=2 Tax=Corynebacterium jeikeium RepID=Q4JVB6_CORJK Length = 423 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 143/355 (40%), Gaps = 40/355 (11%) Query: 25 IALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWSPLKAILRDPSITK----FL 79 IA+DTE Y + LIQL G LIDP + +A R + L Sbjct: 35 IAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPE-----AEPQATRRMAEVVNEAEWVL 89 Query: 80 HAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDW 139 HA DL + G PQ L DTQI G G + M++ Y + + K + DW Sbjct: 90 HAAHTDLPCLM-ALGWRPQVLHDTQIAGQLLG-AERIGLSGMLDAYFDIQVPKDKGNADW 147 Query: 140 LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDA 199 RPLT+ YAA DV +LL + + E +G + EC+ + + A + Sbjct: 148 SRRPLTQAMLNYAALDVEWLLELLDCCLEELAKTGRTEWYIQECQHVLASASPLSAND-- 205 Query: 200 WRDITNAWQLRT---RQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA----RYMP 252 W D+ LR R++A L + R AR D++ ++R L +A R Sbjct: 206 WTDLKGLSSLRRALPRRIA--HDLWESRDAMARRGDISPESILRSRDLVDIAGRAERDRV 263 Query: 253 GSLGELDS-LGLSGSEIRFHGKTLL------ALVEKAQTLPEDALPQPMLNLMDMPGYRK 305 G+L +L+S L S + ++ + + AL+ Q + P +P YR Sbjct: 264 GALQQLNSCLHRSRARMKPRARRHMAEQLSDALMSDTQDIETQQFHPPHAPSKGIPDYRT 323 Query: 306 ---------AFK-AIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNL 350 A+ AI + + + +I + + +RR + Q W K N L Sbjct: 324 WPDEYPVAAAYSDAILTAADNAANILQIRLDTIVTRRNLRQAAWSCWLAKDTNAL 378 >UniRef50_Q16LC6 3-5 exonuclease n=3 Tax=Culicidae RepID=Q16LC6_AEDAE Length = 771 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 15 LCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHL-ALIDPLGITDWSP-LKAILRD 72 L + R F + D E+V + + L+QL L ALI + P L +L D Sbjct: 62 LRDHCREFRVLGFDCEWVNEQGKRHPVALLQLATHRGLCALIRLCEMKRIPPELGELLND 121 Query: 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDK 132 P+I K ED ++ + + + +D + LA CG P +G A + E+ GV LDK Sbjct: 122 PAIVKVGVGPLEDAKLLRHDYNLKVESTLDLRHLADRCGVPGPYGMAKLAEKTLGVKLDK 181 Query: 133 S--ESRTDWLARPLTERQCEYAAADV 156 ++W LTERQ +YAA+D Sbjct: 182 HWRIRASNWENAQLTERQIQYAASDA 207 >UniRef50_A8NTL1 3'-5' exonuclease family protein n=1 Tax=Brugia malayi RepID=A8NTL1_BRUMA Length = 847 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 9/255 (3%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWS 64 + T + L SL + + ++D E R++ L+Q+ + +IDP + D Sbjct: 269 VDTLEKLRSLRDVLNKEQEFSVDLEHNAQRSFLGLTCLMQISTRQMDYIIDPFPLWNDMH 328 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L DP+I K H D+ FG + DT A + + +V+ Sbjct: 329 ILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDT-YKAMRVLNFSKFSYQHLVQT 387 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV-----ETEASGWLPAA 179 TLDK + DW RPLT YA +D YLL +L E A+ L Sbjct: 388 CCNHTLDKKFQKADWRLRPLTIAHKTYARSDTHYLLHCYDQLRKRLLSQENAANNLLEFV 447 Query: 180 LDEC--RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 +E + + ++ + + + L +RQ L L WR +AR D + + Sbjct: 448 YNESAQTCLTVYKKPKFESDGYEKLLVGRKPLNSRQQFALAALWKWRDERARTDDESPQY 507 Query: 238 VVREEHLWSVARYMP 252 V+ + +A +P Sbjct: 508 VLPCHMMLQIAEVLP 522 >UniRef50_Q4DSE3 Ribosomal RNA processing protein 6, putative n=4 Tax=Trypanosoma RepID=Q4DSE3_TRYCR Length = 768 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 14/246 (5%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKAILRDPSITKFLHAGS 83 IA+D E +Y L+Q+ LID L + + L + +P+I K LH Sbjct: 290 IAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCLKLRSSMHLLAPVFLNPNILKVLHGAR 349 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 ED+ FG DT I A M G A V+ + V LDK DW RP Sbjct: 350 EDIRWLQKDFGLYLVNFFDTGI--ALQTLHMPHGLAFAVDHFCQVKLDKKYQTADWRIRP 407 Query: 144 LTERQCEYAAADVWYLLPITAKLMV-----ETEAS--GWLPAALDECRLMQMRRQEV--V 194 + YA D +LL + +L E AS L L+E R + + E + Sbjct: 408 IPAEMATYARQDTHFLLYVYDRLKTLLLNSEGRASIGNLLVHVLNESRRLSLEIYEKPQL 467 Query: 195 APEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 P+ +++ + L + Q+ + + +WR ARE D + V+ + ++A +P Sbjct: 468 DPDASYKIALGRSLGGLSSMQMKVAREIFNWRDAIAREVDDSPPAVLHLSAVLAIATKLP 527 Query: 253 GSLGEL 258 S ++ Sbjct: 528 TSANDV 533 >UniRef50_C0W1R4 Ribonuclease D n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1R4_9ACTO Length = 402 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 155/372 (41%), Gaps = 31/372 (8%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITDWSPLKAILRDP--SITKFLHA 81 +A+D E Y + L+Q+ + LID + D S IL +P + LH Sbjct: 40 VAIDVERAVGYRYSHRAYLVQIRREDVGTFLIDSGTLPDLS----ILNEPLNNAVWILHD 95 Query: 82 GSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLA 141 +D+ E+P+ L DT + A G +G A++ E+ GVTLDK+ DW Sbjct: 96 ADQDIASLRMCGLEIPE-LFDTMLAARLLGF-QRFGLAAVCEQILGVTLDKNHQSDDWST 153 Query: 142 RPLTERQCEYAAADVWYLLPITAKLMVET-EASGWLPAALDECRLMQMRRQEVVAPEDAW 200 RPL YAA DV L + K+ +A+ W A + ++ R + W Sbjct: 154 RPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQEFHNILT--RPTKKPDSEPW 211 Query: 201 RDITNAWQLRTRQ-LACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGE-L 258 R++ ++R+R+ LA L+ L R R A E DL +++ L ++A P + + L Sbjct: 212 RNLRGMGKIRSRRHLAILEELWKTRERIAAEIDLEPTRLIKNRTLVALAFNPPRTQRQFL 271 Query: 259 DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLMDMP---------GYRKAF 307 + L R + A + + ++ E LP Q + P G Sbjct: 272 NEQELRRPGTRKYLDEWFAAINRGKSRSEADLPEFQRSYRHGEFPRATAWRSYEGAHARL 331 Query: 308 KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG-----WRGELM 362 ++ I VS+ I E+L R I + W+ +L E ++ W+ EL+ Sbjct: 332 VHLRDAIRKVSDKLGIDYEILIDTRIIRH-IAWYEVSYQGKDLLEFLTRFGARPWQLELV 390 Query: 363 AEALHNLLQEYP 374 + L +++ P Sbjct: 391 FKPLEKAIKQMP 402 >UniRef50_A9U244 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U244_PHYPA Length = 515 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/265 (21%), Positives = 112/265 (42%), Gaps = 16/265 (6%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 +I+T L + R IA+D E R++ + L+Q+ ++D L + + Sbjct: 224 VISTASELKDMAMKCRLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDFIVDALALRSHM 283 Query: 64 SP-LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P LK + D ++ K +H D+E FG + DT AA + +G A ++ Sbjct: 284 GPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVLQLEGFGLAFLM 343 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWY---------LLPITAKLMVETEAS 173 + + + DK DW RPL +YA D Y ++ ++ + +A Sbjct: 344 QRFLKINPDKRYQLADWRIRPLPAEMIKYAREDTHYLLYLYDLLRVVLVSMRSTAGNDAD 403 Query: 174 GWLPAALDECR--LMQMRRQEVVAPEDAWRDITNAW--QLRTRQLACLQLLADWRLRKAR 229 + R ++M +++++ E ++ + + Q++ L L WR AR Sbjct: 404 DPVLQVYKRSRDICLKMYKKDILT-ETSYLSLYGLQDKNFNSEQMSVLAGLYAWRDNLAR 462 Query: 230 ERDLAVNFVVREEHLWSVARYMPGS 254 + D + FV+ + L+ +A MP + Sbjct: 463 KLDESTGFVLPNQLLYKLAEEMPDT 487 >UniRef50_Q4UGW4 DNA polymerase i, putative n=2 Tax=Theileria RepID=Q4UGW4_THEAN Length = 1786 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%) Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFG-ELPQPLIDTQILAAF--CGRPMSWGF 118 +W LK + + K H G D+ FL V+G E P+ DT + + R +S Sbjct: 1279 EW--LKNLFKSKDTVKVFHNGKFDIN-FLRVYGFEFEGPIFDTMVASKLLVASRYISCKL 1335 Query: 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162 + E Y + LDK++ +DW L E Q Y+A D + LLP+ Sbjct: 1336 THVSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPL 1379 >UniRef50_UPI0001793421 PREDICTED: hypothetical protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793421 Length = 739 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 103/263 (39%), Gaps = 11/263 (4%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 + T++ L + + +A+D E RTY L+Q+ +ID L + D Sbjct: 212 VYTEEQLNLMVSHLITVNELAIDLEAHSYRTYQGFTCLMQISTRNADYIIDTLYLRDKLH 271 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L I +P++ K H D+ G + DT A G +++ Sbjct: 272 VLNEIFTNPAVVKVFHGADSDIPWLQRDLGLYVVNMFDTYQAAKILNFSRK-GLEFLLKH 330 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLP----ITAKLM-VETEASGWLPAA 179 Y V DK+ DW RPL+ YA D YLL I LM + T ++ Sbjct: 331 YCNVDADKTFQLYDWRTRPLSTEAIFYARCDTHYLLYVYDMIKKDLMAMSTNQCNYIELV 390 Query: 180 LDECRLMQMRRQEV-VAPEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLAVN 236 + R EV + +D+ + + +Q+ L+ L WR + ARE D + Sbjct: 391 FQRSADVCKSRYEVNILRDDSHLSMYKRSKKMFDIQQMYALKHLYAWRDKLARELDESPG 450 Query: 237 FVVREEHLWSVARYMPG-SLGEL 258 +++ L ++ +P S G L Sbjct: 451 YILPNHMLLKISEMLPKESFGIL 473 >UniRef50_Q04QR5 Ribonuclease D-related n=6 Tax=Leptospira RepID=Q04QR5_LEPBJ Length = 212 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 5/154 (3%) Query: 17 EAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLGITDWSPL-KAILRDPS 74 E +A +A+D E + +L ++Q+ D +++L+ L +PL K++ +P Sbjct: 23 EEYKADDRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFENPE 82 Query: 75 ITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WGFASMVEEYSGVTLDK 132 I K H D G + + T+I A+ R + G +++E+ +DK Sbjct: 83 IVKIFHFARMDSLFLRYRLGISLENVFCTKI-ASKLARTYTDKHGLKDLIKEFYDEVIDK 141 Query: 133 SESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 +DW + LT+ Q EYA+ DV YL+ + KL Sbjct: 142 KNQSSDWGKKILTKDQIEYASGDVKYLISLEQKL 175 >UniRef50_Q83GB8 Ribonuclease D n=2 Tax=Tropheryma whipplei RepID=Q83GB8_TROWT Length = 391 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 7/183 (3%) Query: 3 YQMITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLG-LIQLFDGEHLALI-DPLG 59 + +I T+ E +R+ F A+DTE Y + L+QL+ I D Sbjct: 16 HSLIETNRQYEEALEGLRSGFGPFAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSK 75 Query: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 I + S L ++ + +HA D++ V G L DT+I P + Sbjct: 76 IDNLSKLGDLIGSEEVV--IHAAINDIKSLKRV-GIHITNLFDTEIACRLLNIP-KVNLS 131 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 + E++ V L K S +W ARPL ++ EYA DV +LL ++ L A L A Sbjct: 132 YVTEKFINVKLRKEYSTVNWSARPLNKKYLEYAEGDVKHLLDLSQALKTALRAENKLEIA 191 Query: 180 LDE 182 +E Sbjct: 192 KEE 194 >UniRef50_B1X218 DNA polymerase I n=3 Tax=Cyanothece RepID=B1X218_CYAA5 Length = 662 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 49/296 (16%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGI 60 +Y++I+ D++L + + + + LD E + ++ LIQ+ + LI+ GI Sbjct: 46 DYEIISDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEFRGI 105 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPL--IDT----QILAAFC---- 110 T+ L+ + P I K H + +++ G P IDT Q+LAA Sbjct: 106 TNKETLRRFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTL 165 Query: 111 ------------------------------GRPMSWGFASMVEEYSGVTLDKSESRTDWL 140 P S+ +V G +LDKS +DW Sbjct: 166 EEDAKTGVLPIPDLTRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDW- 224 Query: 141 ARPLTERQCEYAAADVWYLLPITAKL---MVETEASGWLPAALDE-CRLMQMRRQEVVAP 196 +PLT+ Q +YAA D +LP+ L +++ + + + L R+ QM + Sbjct: 225 GKPLTQEQLQYAANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLD 284 Query: 197 EDAWRDITNAWQLRTR---QLACLQLLADWRLRKARERDLAVNFVVREEHLWSVAR 249 D W ++ + R ++AC L D + ++N E+ + ++AR Sbjct: 285 LDRWGELAKEIETRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAALAR 340 >UniRef50_A7APW4 3'-5' exonuclease domain containing protein n=1 Tax=Babesia bovis RepID=A7APW4_BABBO Length = 230 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 3/104 (2%) Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQ-ILAAFCGRPMSWGFASMV 122 S + IL DP I K H D+ + FG + +D Q + RP S S+V Sbjct: 107 SSVSHILSDPDILKISHGAPSDMRLMYRHFGVRSRSFVDLQSVCEELQLRPCS--LKSVV 164 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 + G+ L K + ++W A L+++Q +YAA D W L KL Sbjct: 165 QRVLGLRLSKKQQCSNWEAAELSQQQIKYAATDAWVTLAAFLKL 208 >UniRef50_Q97HU8 Ribonuclease D n=1 Tax=Clostridium acetobutylicum RepID=Q97HU8_CLOAB Length = 205 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 3/137 (2%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSE 84 IA+DTE +L LIQ+ E + LI ++ L IL+ I K H + Sbjct: 26 IAIDTETTGLDPLKDKLCLIQICAKEKIFLI-KYNNSNQKNLIGILQCSKIIKIFHHANF 84 Query: 85 DLEVFL-NVFGELPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 DL + N+ ++ T+I A G + ++ +Y + +DK +++W A Sbjct: 85 DLRFLMKNLKIYNINNVVCTKIAAKLLNGIEIENSLKKLLRKYLNINIDKKLQKSNWSAE 144 Query: 143 PLTERQCEYAAADVWYL 159 LT+ Q +YA DV YL Sbjct: 145 NLTKEQIQYATYDVIYL 161 >UniRef50_D0RRD6 3'-5' exonuclease family protein n=2 Tax=alpha proteobacterium HIMB114 RepID=D0RRD6_9RICK Length = 206 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 11/171 (6%) Query: 2 NYQMITTD-DALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLG 59 NY+ +D D SL A +IA+D EF +L L+QL DG + + L+ G Sbjct: 3 NYKFYLSDIDGDTSLKNA----SSIAIDGEFSGLNPLTDKLHLLQLCDGSDFVHLVKFEG 58 Query: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS--WG 117 + LK IL + I K H G DL + DT+I + R S G Sbjct: 59 KYNAPNLKEILENNKIKKIFHFGRADLAFLKQHLDIHVTNIFDTKI-GSKISRKFSPHHG 117 Query: 118 FASMVEEYSGVTLDKSESRTDWLAR--PLTERQCEYAAADVWYLLPITAKL 166 + + + L K +DW + +E Q YA DV YL I +L Sbjct: 118 LKDLCRDLININLSKEYQTSDWGKKIEEYSEDQILYACKDVLYLHKIKNEL 168 >UniRef50_A0CQJ2 Chromosome undetermined scaffold_24, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CQJ2_PARTE Length = 733 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 12/145 (8%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALID--PLGITDW---SPLKAILRDPSITKFL 79 I +D E + Q+ ++Q+ D E + +ID +G+ + + K I D I K Sbjct: 60 IGVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIKVF 119 Query: 80 HAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLDKSESR-- 136 +AGS D+ F Q D + +A C +S F + ++Y + KS Sbjct: 120 YAGSTDVLWLKRDFQITIQNFFDIKEVADECKLSKISLIF--LWKQYCDHQVSKSYKTNM 177 Query: 137 --TDWLARPLTERQCEYAAADVWYL 159 +DW RPLT+ Q YAA D +YL Sbjct: 178 QTSDWAERPLTQEQLIYAAYDCYYL 202 >UniRef50_Q241P7 3'-5' exonuclease family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q241P7_TETTH Length = 645 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 75 ITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSE 134 I +F G D+ + L D Q A F + SW ++++Y TL+K E Sbjct: 44 IKQFNKIGQTDIVWLQRDYDILISNYFDIQTAAIFLNKDESWSLTYLLQKYCDYTLEKKE 103 Query: 135 SR----TDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 + ++W RPL+E Q YAA D +L+ I +L+ E Sbjct: 104 KKQLQLSEWSDRPLSEEQLNYAALDSHFLIKIRYELLHE 142 >UniRef50_B7PZE0 Exosome component, putative n=1 Tax=Ixodes scapularis RepID=B7PZE0_IXOSC Length = 518 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 9/195 (4%) Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L + +P I K LH D+ FG L DT A G A ++ Y Sbjct: 76 LNEVFANPKIIKVLHGADMDVLWLQRDFGLYLVGLFDTGQAARVLGM-AHLSLAFLLRHY 134 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-----WLPAAL 180 + DK DW RPL +YA D YLL + + + A G L + Sbjct: 135 CHLDTDKKFQLADWRIRPLPLEMIKYAREDTHYLLHVYDLMRRDLLAKGNQLNNLLHSVF 194 Query: 181 DECRLMQMRRQEV-VAPEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLAVNF 237 + + ++R E + ED++ ++ + ++QL L+ L WR R +R D + + Sbjct: 195 QRSKQVCLKRYEKPLYTEDSYLELYRKSKKAFNSKQLYALRHLYSWRDRISRLEDESTGY 254 Query: 238 VVREEHLWSVARYMP 252 V+ + ++ +P Sbjct: 255 VLPNHMILQISEILP 269 >UniRef50_UPI000186D892 conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186D892 Length = 737 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 59/264 (22%), Positives = 104/264 (39%), Gaps = 20/264 (7%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-T 61 + +IT + + + E + IA+D E R++ L+Q+ + +ID + + + Sbjct: 250 FHLITKPEEIDPMIENLEKCKEIAIDLEHHSYRSFQGFTCLLQISTRDTDYVIDTIALRS 309 Query: 62 DWSPLKAILRDPSITKFLHAGSEDL-----EVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 L I +P+I K H D+ ++ L V + DT S Sbjct: 310 KLEGLNKIFTNPNIVKVFHGADLDILWLQRDLSLYVVN-----MFDTHQAGKLLNYS-SL 363 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL---MVE--TE 171 A ++ + + K DW RPL + YA D YLL I L ++E E Sbjct: 364 SLAYLMFHFCKIVAQKHFQMADWRIRPLPDELLAYAREDTHYLLYIYDNLRNILIEKSNE 423 Query: 172 ASGWLPAALDE-CRLMQMRRQEVVAPEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKA 228 L ++E R+ ++ E + I + RQ LQ L WR A Sbjct: 424 QKNLLRTVINESTRICLKTYKKPNFDESGYMSIYTRSKKIFDNRQKYALQRLYAWRDSTA 483 Query: 229 RERDLAVNFVVREEHLWSVARYMP 252 RE D ++ +V+ + +++ +P Sbjct: 484 RELDESLAYVLPNHMMLNISEVLP 507 >UniRef50_C4LIZ8 Ribonuclease D n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIZ8_CORK4 Length = 462 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 95/416 (22%), Positives = 165/416 (39%), Gaps = 57/416 (13%) Query: 4 QMITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLGI- 60 +I+T D L + + +A+DTE Y + L+QL G L L+D Sbjct: 56 SLISTVDELKNAARVLANGHGPLAVDTERASAYRYGDRAFLLQLKRAGSGLFLVDAEACR 115 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +D PL ++ +T +H+ DL L++ G P L DT++ G Sbjct: 116 SDMGPLAPVVN--RLTWIIHSARTDLPALLDM-GLTPHRLCDTELGGCIAGL-KKVNLGD 171 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPIT---AKLMVETEASGWLP 177 MV+ G L K +W RPL + +YAA DV LL ++ A L+ E + W Sbjct: 172 MVDGLVGYRLAKEHGHENWSRRPLPDEWLDYAALDVECLLELSTTVAGLLSELDRFAWWA 231 Query: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 + R + V P + + N R+LA L+ R R+AR D + + Sbjct: 232 EECEYIRTSTLADAPSVEPSLRVKGLNNLSTPAQRELAF--TLSRERDRRARAVDRSPHR 289 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRF--HGKTLLALVEKAQ---TLPEDALPQ 292 V+ L ++AR P + E+ + + R + ++ ++++ Q T + P+ Sbjct: 290 VLSNSDLIAIARKNPRTFQEM----MDAAHFRSMRNARSWWSIIQGEQDKTTASSSSTPR 345 Query: 293 PMLNLMD---------------------MPGYRKAFKA------IKSLITDVSETHKISA 325 P D P + KA I VSE IS Sbjct: 346 PHCATDDDRGPSRHQGRHSDTHYAGGRRFPNSDRGQKAEELYSLCSEAINVVSEQTGISH 405 Query: 326 ELLASRRQINQLLNWHWKLKPQNNLPEL--------ISGWRGELMAEALHNLLQEY 373 E++ + QI +L+ WH+ +PQ + ++ + W+ +++ N L ++ Sbjct: 406 EVIIT-PQIVRLMAWHFSSEPQAHATDIDMFFTRHGVRRWQRRIVSPVCANALGDH 460 >UniRef50_B6KGV1 Exosome component 10, putative n=3 Tax=Toxoplasma gondii RepID=B6KGV1_TOXGO Length = 1353 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 1/136 (0%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW-SPLKAILRDPSITKFLHAGS 83 +A+D E +Y L+QL E +IDP + D L I +P I K H Sbjct: 485 VAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALFDHLHVLNTITANPKILKIFHGAD 544 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 D+ F + DT + A P A++++ Y V +K DW RP Sbjct: 545 SDIIWLQRDFSVYVVNMFDTCVAARALAVPGGASLANLLQTYCHVEANKQYQLADWRRRP 604 Query: 144 LTERQCEYAAADVWYL 159 LT YA +D YL Sbjct: 605 LTPEMETYARSDTHYL 620 >UniRef50_UPI0001758213 PREDICTED: similar to Rrp6 CG7292-PB n=1 Tax=Tribolium castaneum RepID=UPI0001758213 Length = 947 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 2/158 (1%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 I + L L E +R ++D E R++ LIQ+ + LID L + D S Sbjct: 259 IDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLIQISTEDKDYLIDALALRDKLS 318 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + +I K H +D+E + DT A P + A ++++ Sbjct: 319 ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQYP-ALSLAFLMKK 377 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162 + VT +K DW RPL + YA D YL+ I Sbjct: 378 FCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYI 415 >UniRef50_Q7NEY0 Glr3747 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NEY0_GLOVI Length = 195 Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 12/184 (6%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFV---RTRTYYPQLGLIQLFDG--EHLALIDP 57 Y ++T L+ L + + +A+DTE + T ++ L+Q++DG E +++ID Sbjct: 8 YVLVTETAQLSELVDRWQTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSEAVSVIDC 67 Query: 58 LGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC----GRP 113 + + ++ +R+ I K +H DL +L + + Q+ + G Sbjct: 68 FAVDLTAFVEKTMRNWEIVKLIHNAPYDL-AYLGGAAQARSVVCTLQMARSIPTSRRGAL 126 Query: 114 MSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI--TAKLMVETE 171 ++ + G+ LDK ++W RPLT Q +YAA D W I + +VE E Sbjct: 127 ERNSLKALSAHFLGIELDKRYQASNWALRPLTAEQLDYAALDPWVTFHIWEHMRALVEPE 186 Query: 172 ASGW 175 G+ Sbjct: 187 NEGF 190 >UniRef50_Q5KK81 PM-scl autoantigen, putative n=3 Tax=Eukaryota RepID=Q5KK81_CRYNE Length = 1016 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 4/161 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-- 60 ++ + T + L + E ++ IA+D E R+Y LIQ+ E ++D L + Sbjct: 309 FEFVDTPEKLHRMVEKLKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRK 368 Query: 61 -TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + DP+I K H D+ F L DT P + Sbjct: 369 EIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFDTYSACVVLEMPQR-SLS 427 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL 160 ++++ Y DK R DW RPL + YA +D +LL Sbjct: 428 ALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLL 468 >UniRef50_B6AIJ4 Exosome component 10, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIJ4_9CRYT Length = 1029 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 1/137 (0%) Query: 24 AIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKAILRDPSITKFLHAG 82 +A+D E +T+ + LIQ+ +IDP + + S L + +P I K H Sbjct: 400 VLAIDLEHHSMQTFRGFVCLIQMSTRTCDYIIDPFPLFEELSRLNELTTNPRILKLFHGS 459 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 D+ F + DT A P + +++ Y V +K +DW R Sbjct: 460 DYDIIWLQRDFSVYVVNMFDTGQAARVLNTPGGYSLGNLLNLYCSVEANKQYQLSDWRER 519 Query: 143 PLTERQCEYAAADVWYL 159 PL + EYA +D YL Sbjct: 520 PLPQHLIEYARSDTHYL 536 >UniRef50_C0VVQ6 Ribonuclease D n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVQ6_9CORY Length = 386 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/276 (27%), Positives = 112/276 (40%), Gaps = 16/276 (5%) Query: 25 IALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWSPLKAILRDPSITK---FLH 80 IA+DTE TY + LIQL +G LID + D L +L P++ LH Sbjct: 33 IAIDTERASGYTYDDRAYLIQLRQEGIGTFLIDAEALRD--DLPPVLA-PAVNACPWVLH 89 Query: 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWL 140 A D+ +V P L DT++ F G A+M G+ L K + +W Sbjct: 90 AAVSDIPCLADVGMTAPT-LFDTEVAGRFLGFDKV-NLAAMTNRILGIDLKKGHAAENWS 147 Query: 141 ARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAW 200 RP+ YAA DV L+ + L E G L A E + E W Sbjct: 148 KRPIPRSWLIYAALDVELLIELADTLTALLEREGKL--AWAEAEFQHIIDCPPHHHEKTW 205 Query: 201 RDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS 260 D+ ++ Q+ + L + R A + +A V+ + L +A P + ++D+ Sbjct: 206 LDVKGIRRMHGPQVQAARALFNKRELIAYRKGIAPGRVLSNKLLSLLAEKYPTTAEDVDT 265 Query: 261 LGLSGSEIRFHGKTL---LALV-EKAQTLP-EDALP 291 + S+ + LAL EK TLP ED P Sbjct: 266 ILHHRSDPSMWADVIRRSLALPREKWTTLPHEDGTP 301 >UniRef50_Q8N9H8 Probable exonuclease mut-7 homolog n=15 Tax=Eutheria RepID=MUT7_HUMAN Length = 876 Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 27/158 (17%) Query: 39 PQLGLIQLFDGEHLALIDPLGITD---------WSPLKA-ILRDPSITKFLHAGSEDLE- 87 P+ L+Q+ H+ L+D L ++ +S L A +L DPSITK + DL+ Sbjct: 412 PRPSLLQVAVEGHVFLLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQK 471 Query: 88 ----------VFLNVFGELPQPLIDTQILAAFCGRPMS------WGFASMVEEYSGVTLD 131 V + G + L+ Q+ A P G + +V++ G LD Sbjct: 472 LGTSCPALAHVEKQILGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALD 531 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 K++ ++W RPL E Q YAAAD + LL + L E Sbjct: 532 KTQQLSNWDRRPLYEEQVIYAAADAYCLLEVHQALCRE 569 >UniRef50_A9LGS2 Ribonuclease D (Fragment) n=1 Tax=uncultured planctomycete 5H12 RepID=A9LGS2_9BACT Length = 287 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/178 (21%), Positives = 80/178 (44%), Gaps = 6/178 (3%) Query: 197 EDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLG 256 E W+ ++ L R+LA ++ L R +A R+ + V+ ++ + +A+ S+G Sbjct: 85 EPQWQRVSGITSLNPRELAIVRELWICRDIEAARRNRSAKRVIPDDLIVELAKRGSSSIG 144 Query: 257 ELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ--PMLNLMDMPGYRKAFKAIKSL 313 ++ G R + +EKA L + LP+ P M++ G F + + Sbjct: 145 SFKAIRGFENRVTRGISSEISEAIEKANGLAKTELPKKLPRGKSMNL-GLLGQF--LSTA 201 Query: 314 ITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQ 371 +T V +IS ++ + + ++ W L + P L+ GWR E++ + + +L Sbjct: 202 LTVVCRDQQISPAIVGTASDVRKMAAWRLGLLKMDQPPSLVQGWRAEIVGQLIDQVLN 259 >UniRef50_A2EMW6 HRDC domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2EMW6_TRIVA Length = 443 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 94/238 (39%), Gaps = 19/238 (7%) Query: 27 LDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGIT-DWSPLKAILRDPSITK-FLHAGS 83 L E R RTY P L+ L+ + L +ID + + + PLK IL++P K F Sbjct: 183 LSLEIHRIRTYRPYPCLLTLYSPTYGLFIIDLMKLRFNLDPLKEILQNPDYVKVFFDPNI 242 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 DL V G P ID + ++ G+ + + EE + DW RP Sbjct: 243 YDLLV--ESCGIFISPSIDLSL--SYPGKTIDQCIKELNEEQESL----QNIVVDWRIRP 294 Query: 144 LTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDI 203 LT+ A V +L + A +P+ + +M E + DI Sbjct: 295 LTKFMESTAIEGVLHLPHLAAMAENIVLPEQIIPSFIPYSFTPEMA-------EKMYNDI 347 Query: 204 TNAW-QLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS 260 + L L+ L WR A D + NF V + +W +A+ +P + EL S Sbjct: 348 IAKYGDLEQFSSTILKELISWRDSVAAIEDESPNFFVTDNQIWKIAKNLPTTQDELIS 405 >UniRef50_B7G899 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G899_PHATR Length = 311 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 L +L +P + K LH D+ FG L DT A P + +A +++ Y Sbjct: 205 LLPVLTNPDVVKVLHGADSDIAWLQRDFGLYIVNLFDTMRAARALKFPRA-SYAYVLQHY 263 Query: 126 -SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 G+ DKS DW RPL E +YA D YLL I ++ Sbjct: 264 VDGLHADKSAQLADWRVRPLPEALQQYAIQDTAYLLDIYDRM 305 >UniRef50_Q4FNB9 Ribonuclease D n=3 Tax=Candidatus Pelagibacter RepID=Q4FNB9_PELUB Length = 203 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 4/145 (2%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP--LKAILRDPSITKFLHAG 82 IA+D EF+ L LIQ+ G A I L + L +L D SI K H G Sbjct: 22 IAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYDAPNLNKVLSDASIIKIFHYG 81 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKSESRTDWLA 141 D+ + ++DT+I + S ++++E+ V + K +D+ Sbjct: 82 RADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTLIKEFMNVDVSKQFQSSDF-G 140 Query: 142 RPLTERQCEYAAADVWYLLPITAKL 166 L+ Q +Y A DV YL I +L Sbjct: 141 GELSPAQLKYCANDVIYLHKIHEEL 165 >UniRef50_A7AQX3 DNA polymerase I, putative n=1 Tax=Babesia bovis RepID=A7AQX3_BABBO Length = 1613 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 77 KFLHAGSEDLEVFLNVFGELPQPLIDTQILAAF-CGRPMSWG--FASMVEEYSGVTLDKS 133 K LH G D+ + + P+ DT I A +W + E Y + LDKS Sbjct: 1116 KVLHNGKFDINFLSHNGFNVKGPIFDTMIAAKLLSATRFNWSCKLGHVAERYLNIVLDKS 1175 Query: 134 ESRTDWLARPLTERQCEYAAADVWYLLPI 162 + +DW PL E Q YA+ D LLP+ Sbjct: 1176 QQFSDWTLDPLFEEQVIYASRDTAVLLPL 1204 >UniRef50_B2V8G6 DNA polymerase I n=9 Tax=Aquificales RepID=B2V8G6_SULSY Length = 587 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 14/167 (8%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTE-----FVRTRTYYPQLGLIQLFDGEHLALI 55 M+ IT ++ L SL + ++ P + LDTE F + ++ LIQ+ D E+ +I Sbjct: 2 MDINYITQENQLESL-KVLQDTPYLYLDTEVMIKDFENIDFFNDKIRLIQIGDEENTFVI 60 Query: 56 DPLGITD---WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR 112 D L I + ++ ++ + I H DL+ LP+ + DT I + + Sbjct: 61 DLLKINPEVVKNHIQNLIENKGIIG--HNLKFDLKFLKTNLNILPKIVFDTMIASQILAK 118 Query: 113 PMS---WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADV 156 S ++ + + + +DK+ ++ W A+ L+ Q EYAA D+ Sbjct: 119 GDSNQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDI 165 >UniRef50_Q69RB5 Polymyositis/scleroderma autoantigen 2-like n=3 Tax=Oryza sativa RepID=Q69RB5_ORYSJ Length = 1031 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 100 LIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYL 159 + DT +P A ++E Y GVT DK+ R DW RPLT +YA D YL Sbjct: 325 MFDTAKACEVLSKPQK-SLAYLLELYCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYL 383 Query: 160 LPITAKLMVETEASGW 175 L I L E A + Sbjct: 384 LYIANCLASELHAKTY 399 >UniRef50_A0L614 3'-5' exonuclease n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L614_MAGSM Length = 238 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 63/157 (40%), Gaps = 7/157 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTE----FVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++ D AL + A+R + DTE F + +Y P L IQL + + L + Sbjct: 34 LVNQDQALPAAIAALRQERVLGFDTETRPSFRKGTSYDPTL--IQLAGEKVVYLFQINLL 91 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D PL +L D SI K S+D+ +F P +D A + G S Sbjct: 92 QDHRPLAELLADTSIHKVGVGLSQDIRQLQAIFSFKPGGFVDVGETARH-NNIATRGLRS 150 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVW 157 M + V + K ++W L Q YAA D W Sbjct: 151 MAAAFFHVRISKRAQCSNWAQEALQPFQIIYAATDAW 187 >UniRef50_B8MZK1 Exosome complex exonuclease Rrp6, putative n=2 Tax=Leotiomyceta RepID=B8MZK1_ASPFN Length = 434 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 13/172 (7%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--TD 62 + T + + + E +++ IA+D E +Y + L+Q+ + ++D L + Sbjct: 222 FVDTLEGVKEMLEELKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWREE 281 Query: 63 WSPLKAILRDPSITKFLHAGSEDL-----EVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 L + DPSI K H S D+ ++ L V G + DT A P Sbjct: 282 LQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVG-----MFDTYHAACALNYPKR-S 335 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 +++++ DK DW RP+ E +YA +D YLL I L E Sbjct: 336 LKFLLQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNE 387 >UniRef50_UPI0000ECA4C2 CDNA FLJ37119 fis, clone BRACE2022333. n=3 Tax=Tetrapoda RepID=UPI0000ECA4C2 Length = 725 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 11/90 (12%) Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 G + +V+ G LDK+E ++W RPL E Q YAA+D + LL + KL + E+ G L Sbjct: 515 GLSLLVQHVLGKPLDKTEQMSNWEKRPLREEQILYAASDAYCLLEVYEKLCKDPESFG-L 573 Query: 177 PAALDECRL----------MQMRRQEVVAP 196 + L E + Q+ +QEV +P Sbjct: 574 SSDLTESLVGKPSVKPRAKKQLNKQEVPSP 603 >UniRef50_A2DWN1 Zinc finger, C2H2 type family protein n=1 Tax=Trichomonas vaginalis RepID=A2DWN1_TRIVA Length = 589 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 4/58 (6%) Query: 114 MSWGFASMVEEYSG----VTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLM 167 +S F MVEE G + DK+ SR+DW RPLT +QC YA DV+ L +KL+ Sbjct: 149 ISINFQLMVEELIGSPKALFKDKNISRSDWTVRPLTIKQCLYAVFDVYALYLCYSKLL 206 >UniRef50_Q179T2 Probable exonuclease mut-7 homolog n=2 Tax=Culicini RepID=MUT7_AEDAE Length = 719 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 28/175 (16%) Query: 12 LASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALID----PLGITDWSPL- 66 L+ LC IA D+E+ T ++ LIQL + + +ID L DW+ L Sbjct: 450 LSDLCRQ----SMIAFDSEWKPTFGGANEVSLIQLATWDDVYMIDVMVSQLEPLDWAALA 505 Query: 67 KAILRDPSITKFLHAGSEDLEVF------LNVF--GELPQPLIDTQILAAFCGRPMSWGF 118 K + + K A S D+ +F NV + ++D Q+L R S+ F Sbjct: 506 KNVFNRDDVLKLSFAPSTDISMFQKALPSFNVMYSSQSTSAILDLQLLWRHVERFDSFRF 565 Query: 119 -----------ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162 A++V G LDKS ++W RPL + Q YAA D + LL I Sbjct: 566 PYHEESVNQNLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEI 620 >UniRef50_C1EIE7 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EIE7_9CHLO Length = 1038 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 11/90 (12%) Query: 80 HAGSEDL-EVFLNVFGE----LPQPLIDTQILAAFCGRP-----MSWGFASMVEEYSGVT 129 +A ED E +N FGE L ++D + LA C P G A++V G Sbjct: 693 NANDEDTDERRVNEFGETGHALGTRIVDVKALA-LCAFPDKQKLTRVGLATLVASVLGAY 751 Query: 130 LDKSESRTDWLARPLTERQCEYAAADVWYL 159 +DK+E +DW RPLT Q +YAAAD L Sbjct: 752 VDKTEQCSDWERRPLTTDQVDYAAADAHVL 781 >UniRef50_C1MH52 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MH52_9CHLO Length = 590 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 5/88 (5%) Query: 90 LNVFGELPQP--LIDTQILA--AFCGR-PMSWGFASMVEEYSGVTLDKSESRTDWLARPL 144 L V PQP +ID + +A A R G A++ + G TL K+E +DW RPL Sbjct: 206 LRVGAGHPQPRAMIDVKQVANVASANRMNTRVGLATLTKFTLGATLSKAEQCSDWSRRPL 265 Query: 145 TERQCEYAAADVWYLLPITAKLMVETEA 172 T Q YAAAD +YL I K + ++ Sbjct: 266 TAAQLSYAAADAFYLCVIFDKCVFKSNG 293 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P09155 Ribonuclease D n=146 Tax=Gammaproteobacteria Rep... 497 e-139 UniRef50_C9XUE4 Ribonuclease D n=1 Tax=Cronobacter turicensis Re... 470 e-131 UniRef50_C6C608 Ribonuclease D n=19 Tax=Gammaproteobacteria RepI... 443 e-123 UniRef50_B7VI13 Ribonuclease D n=22 Tax=Gammaproteobacteria RepI... 419 e-116 UniRef50_D0M5H9 Ribonuclease D n=15 Tax=Gammaproteobacteria RepI... 416 e-115 UniRef50_A5F6R9 Ribonuclease D n=31 Tax=Vibrio RepID=A5F6R9_VIBC3 399 e-109 UniRef50_Q47YC8 Ribonuclease D n=1 Tax=Colwellia psychrerythraea... 392 e-107 UniRef50_UPI0000E0E878 ribonuclease D n=1 Tax=Glaciecola sp. HTC... 392 e-107 UniRef50_C4K3X6 RNase D, processes tRNA n=9 Tax=Enterobacteriace... 391 e-107 UniRef50_B8F419 Ribonuclease D n=8 Tax=Pasteurellaceae RepID=B8F... 387 e-106 UniRef50_Q3ICG4 Putative RNase D, processing tRNAs n=3 Tax=Alter... 386 e-106 UniRef50_Q15S24 Ribonuclease D n=1 Tax=Pseudoalteromonas atlanti... 386 e-106 UniRef50_A0YC02 Ribonuclease D n=1 Tax=marine gamma proteobacter... 385 e-105 UniRef50_C0N8D2 Ribonuclease D n=1 Tax=Methylophaga thiooxidans ... 381 e-104 UniRef50_B9CJZ2 Ribonuclease D n=2 Tax=Atopobium RepID=B9CJZ2_9ACTN 380 e-104 UniRef50_C5BMI8 Ribonuclease D n=1 Tax=Teredinibacter turnerae T... 379 e-103 UniRef50_Q0F2Y2 Ribonuclease D n=1 Tax=Mariprofundus ferrooxydan... 378 e-103 UniRef50_A4SMN8 Ribonuclease D n=2 Tax=Aeromonas RepID=A4SMN8_AERS4 376 e-103 UniRef50_Q605A6 Ribonuclease D n=1 Tax=Methylococcus capsulatus ... 376 e-103 UniRef50_P44442 Ribonuclease D n=25 Tax=Pasteurellaceae RepID=RN... 375 e-102 UniRef50_B8GL88 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. HL-E... 375 e-102 UniRef50_B3PKH0 Ribonuclease D n=1 Tax=Cellvibrio japonicus Ueda... 373 e-102 UniRef50_C7RC18 Ribonuclease D n=1 Tax=Kangiella koreensis DSM 1... 371 e-101 UniRef50_A4GIY0 Putative ribonuclease D n=1 Tax=uncultured marin... 370 e-101 UniRef50_B5JVS3 Ribonuclease D n=1 Tax=gamma proteobacterium HTC... 370 e-101 UniRef50_Q21L29 Ribonuclease D n=1 Tax=Saccharophagus degradans ... 369 e-101 UniRef50_B4RU88 Ribonuclease D n=2 Tax=Alteromonas macleodii Rep... 369 e-101 UniRef50_Q5QWP5 Ribonuclease D n=2 Tax=Idiomarina RepID=Q5QWP5_I... 366 e-100 UniRef50_A4VJA7 Ribonuclease D n=25 Tax=Bacteria RepID=A4VJA7_PSEU5 365 1e-99 UniRef50_A4BJR0 Ribonuclease D n=1 Tax=Reinekea blandensis MED29... 365 1e-99 UniRef50_A0KXU5 Ribonuclease D n=21 Tax=Shewanella RepID=A0KXU5_... 364 3e-99 UniRef50_C8WAD1 Ribonuclease D n=1 Tax=Atopobium parvulum DSM 20... 363 5e-99 UniRef50_A6FH72 RNase D, processes tRNA n=1 Tax=Moritella sp. PE... 362 8e-99 UniRef50_A4E7K3 Putative uncharacterized protein n=3 Tax=Collins... 361 3e-98 UniRef50_Q0BVP4 Ribonuclease D n=18 Tax=Alphaproteobacteria RepI... 361 3e-98 UniRef50_B9ZRL3 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. K90m... 360 5e-98 UniRef50_D2LDG9 Ribonuclease D n=1 Tax=Rhodomicrobium vannielii ... 359 1e-97 UniRef50_D0CQ07 Ribonuclease D n=1 Tax=Silicibacter lacuscaerule... 354 4e-96 UniRef50_Q2RSM2 Ribonuclease D n=10 Tax=Alphaproteobacteria RepI... 353 6e-96 UniRef50_A4A872 Ribonuclease D n=1 Tax=Congregibacter litoralis ... 351 2e-95 UniRef50_B8FEX5 3'-5' exonuclease n=1 Tax=Desulfatibacillum alke... 351 2e-95 UniRef50_A6VYC1 Ribonuclease D n=2 Tax=Marinomonas RepID=A6VYC1_... 351 3e-95 UniRef50_C6XKM8 Ribonuclease D n=1 Tax=Hirschia baltica ATCC 498... 350 5e-95 UniRef50_D0WEC8 Ribonuclease D n=1 Tax=Slackia exigua ATCC 70012... 350 5e-95 UniRef50_C4LF08 Ribonuclease D n=1 Tax=Tolumonas auensis DSM 918... 349 9e-95 UniRef50_Q1N1A2 Ribonuclease D n=1 Tax=Bermanella marisrubri Rep... 349 1e-94 UniRef50_Q2BKH7 Ribonuclease D n=1 Tax=Neptuniibacter caesariens... 349 1e-94 UniRef50_B8KGY1 Ribonuclease D n=1 Tax=gamma proteobacterium NOR... 348 2e-94 UniRef50_C7MN49 Ribonuclease D n=3 Tax=Coriobacteriaceae RepID=C... 347 3e-94 UniRef50_A5G9G2 3'-5' exonuclease n=8 Tax=Desulfuromonadales Rep... 347 3e-94 UniRef50_A1SVE6 Ribonuclease D n=3 Tax=Psychromonas RepID=A1SVE6... 347 5e-94 UniRef50_A7HYE5 Ribonuclease D n=116 Tax=Alphaproteobacteria Rep... 346 8e-94 UniRef50_B7RU98 Ribonuclease D n=1 Tax=marine gamma proteobacter... 345 1e-93 UniRef50_A9A075 3'-5' exonuclease n=1 Tax=Desulfococcus oleovora... 344 3e-93 UniRef50_B3Q9Q3 Ribonuclease D n=5 Tax=Bradyrhizobiaceae RepID=B... 344 4e-93 UniRef50_C1ZCS8 Ribonuclease D n=1 Tax=Planctomyces limnophilus ... 343 7e-93 UniRef50_C3ZLP6 Putative uncharacterized protein n=1 Tax=Branchi... 340 5e-92 UniRef50_A3ZQI0 Ribonuclease D n=1 Tax=Blastopirellula marina DS... 338 2e-91 UniRef50_A1UT53 Ribonuclease D n=5 Tax=Bartonella RepID=A1UT53_B... 337 3e-91 UniRef50_Q1QXJ4 Ribonuclease D n=1 Tax=Chromohalobacter salexige... 336 7e-91 UniRef50_Q3A7R1 RNase D n=2 Tax=Desulfuromonadales RepID=Q3A7R1_... 335 1e-90 UniRef50_UPI0000E469F8 PREDICTED: similar to exosome component 1... 334 3e-90 UniRef50_Q7URG3 Ribonuclease D n=1 Tax=Rhodopirellula baltica Re... 334 4e-90 UniRef50_Q31F99 Ribonuclease D n=1 Tax=Thiomicrospira crunogena ... 334 4e-90 UniRef50_C4Q1K8 Polymyositis/scleroderma autoantigen-related n=1... 333 7e-90 UniRef50_Q6C721 YALI0E04444p n=1 Tax=Yarrowia lipolytica RepID=Q... 332 1e-89 UniRef50_B3E3R4 3'-5' exonuclease n=1 Tax=Geobacter lovleyi SZ R... 332 2e-89 UniRef50_Q55AW0 3'-5' exonuclease n=1 Tax=Dictyostelium discoide... 331 3e-89 UniRef50_Q2SIW8 Ribonuclease D n=1 Tax=Hahella chejuensis KCTC 2... 329 1e-88 UniRef50_C0QAP2 Rnd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 329 1e-88 UniRef50_UPI000180BC5E PREDICTED: similar to exosome component 1... 328 2e-88 UniRef50_Q7QBT6 AGAP002300-PA n=3 Tax=Culicidae RepID=Q7QBT6_ANOGA 328 2e-88 UniRef50_Q01780 Exosome component 10 n=55 Tax=Eumetazoa RepID=EX... 327 6e-88 UniRef50_Q0BZZ0 Ribonuclease D n=1 Tax=Hyphomonas neptunium ATCC... 326 1e-87 UniRef50_A6C450 Ribonuclease D n=1 Tax=Planctomyces maris DSM 87... 325 2e-87 UniRef50_UPI0001926123 PREDICTED: similar to predicted protein n... 323 6e-87 UniRef50_UPI00016C3C86 ribonuclease D n=1 Tax=Gemmata obscuriglo... 322 1e-86 UniRef50_D2QXT8 3'-5' exonuclease n=1 Tax=Pirellula staleyi DSM ... 322 1e-86 UniRef50_A1B391 Ribonuclease D n=14 Tax=Alphaproteobacteria RepI... 322 1e-86 UniRef50_Q12149 Exosome complex exonuclease RRP6 n=9 Tax=Sacchar... 321 3e-86 UniRef50_C1AC33 Putative ribonuclease n=1 Tax=Gemmatimonas auran... 321 3e-86 UniRef50_B0U173 Ribonuclease D n=18 Tax=Francisella RepID=B0U173... 320 5e-86 UniRef50_Q1YTB3 Ribonuclease D n=1 Tax=gamma proteobacterium HTC... 320 7e-86 UniRef50_C4QXG4 Exonuclease component of the nuclear exosome n=1... 319 7e-86 UniRef50_D0KY39 Ribonuclease D n=1 Tax=Halothiobacillus neapolit... 319 9e-86 UniRef50_Q0VNN2 Ribonuclease D n=1 Tax=Alcanivorax borkumensis S... 319 2e-85 UniRef50_D2VPJ2 3'-5' exonuclease and HRDC domain-containing pro... 318 3e-85 UniRef50_Q10146 Exosome complex exonuclease rrp6 n=1 Tax=Schizos... 317 3e-85 UniRef50_B4X4T0 Ribonuclease D n=1 Tax=Alcanivorax sp. DG881 Rep... 317 4e-85 UniRef50_Q6AJF4 Related to ribonuclease D n=1 Tax=Desulfotalea p... 315 1e-84 UniRef50_UPI0001793421 PREDICTED: hypothetical protein n=1 Tax=A... 315 1e-84 UniRef50_A9V5N1 Predicted protein n=1 Tax=Monosiga brevicollis R... 315 1e-84 UniRef50_C4XX47 Putative uncharacterized protein n=1 Tax=Clavisp... 315 2e-84 UniRef50_B3RZJ7 Putative uncharacterized protein (Fragment) n=1 ... 314 3e-84 UniRef50_Q2G8P2 Ribonuclease D n=10 Tax=Sphingomonadales RepID=Q... 313 6e-84 UniRef50_A3GG05 Ribosomal RNA processing 3'-5' exonuclease n=8 T... 313 7e-84 UniRef50_Q5GT27 Ribonuclease D n=10 Tax=Wolbachia RepID=Q5GT27_W... 312 1e-83 UniRef50_A5DWN7 Putative uncharacterized protein n=1 Tax=Loddero... 311 2e-83 UniRef50_Q75CB2 ACL001Cp n=2 Tax=Saccharomycetaceae RepID=Q75CB2... 311 3e-83 UniRef50_B6K2U5 Exosome complex exonuclease RRP6 n=1 Tax=Schizos... 310 4e-83 UniRef50_UPI0001C31C49 Ribonuclease D n=1 Tax=Conexibacter woese... 310 5e-83 UniRef50_A9LLI7 RRP6-like protein 2 n=6 Tax=rosids RepID=A9LLI7_... 310 5e-83 UniRef50_UPI000186D892 conserved hypothetical protein n=1 Tax=Pe... 310 6e-83 UniRef50_A4RDR3 Putative uncharacterized protein n=1 Tax=Magnapo... 309 8e-83 UniRef50_C9SGG4 3'-5' exonuclease domain-containing protein n=1 ... 309 1e-82 UniRef50_B0DUK1 Predicted protein n=1 Tax=Laccaria bicolor S238N... 308 2e-82 UniRef50_Q17951 Protein C14A4.4a, confirmed by transcript eviden... 307 3e-82 UniRef50_UPI000180BF09 PREDICTED: similar to exosome component 1... 307 4e-82 UniRef50_A0Z9G7 Ribonuclease D n=2 Tax=unclassified Gammaproteob... 307 4e-82 UniRef50_Q7S5A8 Related to nucleolar 100K polymyositis-scleroder... 307 6e-82 UniRef50_C5FLQ1 Ribosomal RNA processing 3'-5' exonuclease n=1 T... 305 1e-81 UniRef50_B2VXT5 Exosome complex exonuclease Rrp n=2 Tax=Pleospor... 305 2e-81 UniRef50_C5DEP9 KLTH0C11066p n=1 Tax=Lachancea thermotolerans CB... 305 2e-81 UniRef50_B9I623 Predicted protein n=2 Tax=Malpighiales RepID=B9I... 304 3e-81 UniRef50_A6R753 Predicted protein n=4 Tax=cellular organisms Rep... 304 4e-81 UniRef50_A6DHN3 Putative uncharacterized protein n=1 Tax=Lentisp... 303 7e-81 UniRef50_A2R7H4 Contig An16c0130, complete genome n=16 Tax=Eurot... 302 2e-80 UniRef50_A8NTL1 3'-5' exonuclease family protein n=1 Tax=Brugia ... 302 2e-80 UniRef50_Q7XE52 Nucleolar protein, putative, expressed n=13 Tax=... 301 3e-80 UniRef50_B3DN45 LD13130p (Fragment) n=14 Tax=Drosophila RepID=B3... 301 3e-80 UniRef50_A5WG76 3'-5' exonuclease n=3 Tax=Psychrobacter RepID=A5... 300 4e-80 UniRef50_Q23S17 3'-5' exonuclease family protein n=1 Tax=Tetrahy... 299 1e-79 UniRef50_A1U125 3'-5' exonuclease n=3 Tax=Marinobacter RepID=A1U... 297 6e-79 UniRef50_UPI000023ED22 hypothetical protein FG06049.1 n=1 Tax=Gi... 296 8e-79 UniRef50_B6DTH8 Exosome subunit Rrp6P n=1 Tax=Bodo saltans RepID... 296 1e-78 UniRef50_A5DAB2 Putative uncharacterized protein n=2 Tax=Pichia ... 295 2e-78 UniRef50_A6SCE7 Putative uncharacterized protein n=2 Tax=Sclerot... 294 4e-78 UniRef50_Q6FA19 Ribonuclease D, processes tRNA n=19 Tax=Acinetob... 293 7e-78 UniRef50_B8PGQ0 Predicted protein n=2 Tax=Postia placenta Mad-69... 292 2e-77 UniRef50_B7PZE0 Exosome component, putative n=1 Tax=Ixodes scapu... 292 2e-77 UniRef50_D1ICW5 Whole genome shotgun sequence of line PN40024, s... 291 2e-77 UniRef50_B0EQ49 Exosome complex exonuclease RRP6, putative n=2 T... 289 1e-76 UniRef50_C1E3A4 Predicted protein (Fragment) n=2 Tax=Mamiellales... 289 2e-76 UniRef50_Q4DSE3 Ribosomal RNA processing protein 6, putative n=4... 288 2e-76 UniRef50_C8PX51 3'-5' exonuclease n=1 Tax=Enhydrobacter aerosacc... 287 4e-76 UniRef50_B4D6R3 3'-5' exonuclease n=1 Tax=Chthoniobacter flavus ... 285 1e-75 UniRef50_D0MWN1 Exosome complex exonuclease RRP6-like protein n=... 284 3e-75 UniRef50_C9RLF5 3'-5' exonuclease n=1 Tax=Fibrobacter succinogen... 284 4e-75 UniRef50_UPI0001746047 ribonuclease D, putative n=1 Tax=Verrucom... 284 5e-75 UniRef50_C0W1R4 Ribonuclease D n=1 Tax=Actinomyces coleocanis DS... 283 9e-75 UniRef50_C7M0M9 3'-5' exonuclease n=1 Tax=Acidimicrobium ferroox... 282 1e-74 UniRef50_A4IA84 Exosome subunit rrp6p homologue, putative n=3 Ta... 282 1e-74 UniRef50_Q8T0Z8 PM-Scl autoantigen-like protein n=1 Tax=Bombyx m... 282 2e-74 UniRef50_B9XPC9 3'-5' exonuclease n=1 Tax=bacterium Ellin514 Rep... 280 7e-74 UniRef50_Q6A8V2 Ribonuclease D n=2 Tax=Propionibacterium acnes R... 277 4e-73 UniRef50_UPI0001758213 PREDICTED: similar to Rrp6 CG7292-PB n=1 ... 276 9e-73 UniRef50_UPI0000D56CFF PREDICTED: similar to Rrp6 CG7292-PB n=1 ... 275 1e-72 UniRef50_A9LLI8 RRP6-like protein 3 n=5 Tax=rosids RepID=A9LLI8_... 275 2e-72 UniRef50_D2NTT8 Ribonuclease D n=2 Tax=Rothia mucilaginosa RepID... 275 2e-72 UniRef50_Q5KK81 PM-scl autoantigen, putative n=3 Tax=Eukaryota R... 275 2e-72 UniRef50_C7R4I8 3'-5' exonuclease n=1 Tax=Jonesia denitrificans ... 275 2e-72 UniRef50_B6KGV1 Exosome component 10, putative n=3 Tax=Toxoplasm... 274 3e-72 UniRef50_D0LT15 Ribonuclease D n=1 Tax=Haliangium ochraceum DSM ... 274 3e-72 UniRef50_D2SEB8 3'-5' exonuclease n=1 Tax=Geodermatophilus obscu... 274 5e-72 UniRef50_D1I5Y8 Whole genome shotgun sequence of line PN40024, s... 273 9e-72 UniRef50_B2AKX1 Predicted CDS Pa_5_9190 n=1 Tax=Podospora anseri... 272 2e-71 UniRef50_C5X9Z8 Putative uncharacterized protein Sb02g034580 n=1... 269 1e-70 UniRef50_A4ALP3 Ribonuclease n=4 Tax=Actinobacteria (class) RepI... 269 2e-70 UniRef50_A7BCR3 Putative uncharacterized protein n=1 Tax=Actinom... 267 4e-70 UniRef50_Q6SGG6 Ribonuclease D, putative n=4 Tax=Bacteria RepID=... 267 4e-70 UniRef50_A0LFB2 3'-5' exonuclease n=1 Tax=Syntrophobacter fumaro... 266 1e-69 UniRef50_A9U244 Predicted protein (Fragment) n=1 Tax=Physcomitre... 266 1e-69 UniRef50_D0YSP9 Ribonuclease D n=1 Tax=Mobiluncus mulieris 28-1 ... 266 1e-69 UniRef50_A7HCG7 3'-5' exonuclease n=4 Tax=Anaeromyxobacter RepID... 265 2e-69 UniRef50_A9RMT7 Predicted protein (Fragment) n=1 Tax=Physcomitre... 265 2e-69 UniRef50_C2KQ41 Ribonuclease D n=2 Tax=Mobiluncus RepID=C2KQ41_9... 264 3e-69 UniRef50_B1ZWM0 3'-5' exonuclease n=2 Tax=Opitutaceae RepID=B1ZW... 263 7e-69 UniRef50_UPI000185C37F ribonuclease D n=1 Tax=Corynebacterium am... 262 1e-68 UniRef50_C8NPA1 Ribonuclease D n=9 Tax=Corynebacterium RepID=C8N... 262 2e-68 UniRef50_C5VCE9 Ribonuclease D n=2 Tax=Corynebacterium matruchot... 261 4e-68 UniRef50_A8L0K3 3'-5' exonuclease n=84 Tax=Actinomycetales RepID... 260 4e-68 UniRef50_UPI0001BC2C11 putative ribonuclease D n=1 Tax=Brevibact... 257 3e-67 UniRef50_B2UPD3 3'-5' exonuclease n=1 Tax=Akkermansia muciniphil... 257 4e-67 UniRef50_Q3BSC1 Ribonuclease D n=20 Tax=Xanthomonadaceae RepID=Q... 255 2e-66 UniRef50_D0WQH3 Putative ribonuclease D n=1 Tax=Actinomyces sp. ... 255 3e-66 UniRef50_B5JQC7 3'-5' exonuclease domain protein n=1 Tax=Verruco... 254 4e-66 UniRef50_Q09BY7 3'-5' exonuclease, putative n=2 Tax=Cystobacteri... 252 2e-65 UniRef50_Q5PBN9 Ribonuclease D n=5 Tax=Anaplasma RepID=Q5PBN9_ANAMM 249 1e-64 UniRef50_C7NI77 Ribonuclease D n=1 Tax=Kytococcus sedentarius DS... 248 2e-64 UniRef50_A9WRA0 Ribonuclease D n=5 Tax=Actinomycetales RepID=A9W... 247 4e-64 UniRef50_A8GWM0 Ribonuclease D n=16 Tax=Proteobacteria RepID=A8G... 247 4e-64 UniRef50_C8NU72 Ribonuclease D n=1 Tax=Corynebacterium genitaliu... 247 7e-64 UniRef50_C0VVQ6 Ribonuclease D n=2 Tax=Corynebacterium glucurono... 245 2e-63 UniRef50_C7MCA5 Ribonuclease D n=1 Tax=Brachybacterium faecium D... 243 7e-63 UniRef50_C0XSM9 Ribonuclease n=1 Tax=Corynebacterium lipophilofl... 242 2e-62 UniRef50_C0W3T7 Possible ribonuclease D n=1 Tax=Actinomyces urog... 241 3e-62 UniRef50_A0EBI7 Chromosome undetermined scaffold_88, whole genom... 239 1e-61 UniRef50_Q6NGV4 Putative ribonuclease n=1 Tax=Corynebacterium di... 239 2e-61 UniRef50_B0S9S6 Ribonuclease III n=6 Tax=Leptospira RepID=B0S9S6... 237 5e-61 UniRef50_B8MZK1 Exosome complex exonuclease Rrp6, putative n=2 T... 237 7e-61 UniRef50_C8NCR6 Ribonuclease D n=1 Tax=Cardiobacterium hominis A... 235 2e-60 UniRef50_Q4UC54 3'-5' exonuclease, putative n=2 Tax=Theileria Re... 234 3e-60 UniRef50_C5KIT4 Ribonuclease D, putative n=1 Tax=Perkinsus marin... 233 6e-60 UniRef50_Q2LWK2 Ribonuclease D n=1 Tax=Syntrophus aciditrophicus... 230 5e-59 UniRef50_A5EXN2 Ribonuclease D n=2 Tax=Dichelobacter nodosus Rep... 230 7e-59 UniRef50_A7AVN6 Exosome component 10, putative n=1 Tax=Babesia b... 229 1e-58 UniRef50_B3DSL7 Ribonuclease D n=17 Tax=Bifidobacterium RepID=B3... 227 4e-58 UniRef50_C4LIZ8 Ribonuclease D n=1 Tax=Corynebacterium kroppenst... 226 1e-57 UniRef50_UPI0001B4D324 ribonuclease D n=1 Tax=Streptomyces virid... 225 1e-57 UniRef50_Q83GB8 Ribonuclease D n=2 Tax=Tropheryma whipplei RepID... 223 8e-57 UniRef50_B6AIJ4 Exosome component 10, putative n=1 Tax=Cryptospo... 222 1e-56 UniRef50_A9V721 Predicted protein n=1 Tax=Monosiga brevicollis R... 222 3e-56 UniRef50_B3E046 Ribonuclease D n=1 Tax=Methylacidiphilum inferno... 221 4e-56 UniRef50_C2CWJ0 Ribonuclease III n=3 Tax=Bifidobacteriaceae RepI... 218 2e-55 UniRef50_D2RBB4 3'-5' exonuclease n=1 Tax=Gardnerella vaginalis ... 218 3e-55 UniRef50_A6G563 Ribonuclease D, putative n=1 Tax=Plesiocystis pa... 216 1e-54 UniRef50_A4S626 Predicted protein (Fragment) n=3 Tax=Eukaryota R... 215 3e-54 UniRef50_Q5CS61 RRPp/PMC2 like exosome 3'-5' exoribonuclease sub... 213 1e-53 UniRef50_Q4JVB6 Rnd protein n=2 Tax=Corynebacterium jeikeium Rep... 200 6e-50 UniRef50_Q241P8 3'-5' exonuclease family protein n=2 Tax=Eukaryo... 198 2e-49 UniRef50_B8C5L5 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 196 1e-48 UniRef50_D0RPF8 Putative ribonuclease D n=1 Tax=alpha proteobact... 186 1e-45 UniRef50_A2EMW6 HRDC domain containing protein n=1 Tax=Trichomon... 186 1e-45 UniRef50_A9EXG4 Rnd protein n=1 Tax=Sorangium cellulosum 'So ce ... 184 6e-45 UniRef50_Q69RB5 Polymyositis/scleroderma autoantigen 2-like n=3 ... 180 7e-44 UniRef50_B7G899 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 180 9e-44 UniRef50_Q55641 Ribonuclease D n=50 Tax=Cyanobacteria RepID=Q556... 178 2e-43 UniRef50_Q31QF9 3'-5' exonuclease n=3 Tax=Synechococcus RepID=Q3... 170 9e-41 UniRef50_A0L4G0 3'-5' exonuclease n=1 Tax=Magnetococcus sp. MC-1... 167 7e-40 UniRef50_O67779 DNA polymerase I n=4 Tax=Aquificaceae RepID=DPO1... 167 8e-40 UniRef50_A0CQJ2 Chromosome undetermined scaffold_24, whole genom... 166 2e-39 UniRef50_Q0BUA3 Ribonuclease D n=208 Tax=Bacteria RepID=Q0BUA3_G... 163 7e-39 UniRef50_Q97HU8 Ribonuclease D n=1 Tax=Clostridium acetobutylicu... 161 3e-38 UniRef50_Q3YR08 3'-5' exonuclease n=4 Tax=Bacteria RepID=Q3YR08_... 161 4e-38 UniRef50_Q16D56 3'-5' exonuclease family protein, putative n=10 ... 160 9e-38 UniRef50_UPI0001C360F5 hypothetical protein ChatD1_13164 n=1 Tax... 159 2e-37 UniRef50_D0LTA5 3'-5' exonuclease n=2 Tax=Haliangium ochraceum D... 157 5e-37 UniRef50_Q04QR5 Ribonuclease D-related n=6 Tax=Leptospira RepID=... 157 7e-37 UniRef50_A0DUC4 Chromosome undetermined scaffold_64, whole genom... 154 4e-36 UniRef50_D0RRD6 3'-5' exonuclease family protein n=2 Tax=alpha p... 153 1e-35 UniRef50_Q1ARA6 DNA polymerase I n=1 Tax=Rubrobacter xylanophilu... 149 1e-34 UniRef50_Q4FNB9 Ribonuclease D n=3 Tax=Candidatus Pelagibacter R... 148 3e-34 UniRef50_D1ZW95 Whole genome shotgun sequence assembly, contig_9... 146 1e-33 UniRef50_A9LGS2 Ribonuclease D (Fragment) n=1 Tax=uncultured pla... 146 1e-33 UniRef50_B2V8G6 DNA polymerase I n=9 Tax=Aquificales RepID=B2V8G... 144 6e-33 UniRef50_A7AQX3 DNA polymerase I, putative n=1 Tax=Babesia bovis... 143 1e-32 UniRef50_Q4UGW4 DNA polymerase i, putative n=2 Tax=Theileria Rep... 141 6e-32 UniRef50_Q7NEY0 Glr3747 protein n=1 Tax=Gloeobacter violaceus Re... 139 2e-31 UniRef50_B1X218 DNA polymerase I n=3 Tax=Cyanothece RepID=B1X218... 138 5e-31 Sequences not found previously or not previously below threshold: UniRef50_Q4P181 Putative uncharacterized protein n=1 Tax=Ustilag... 267 4e-70 UniRef50_A8QBU8 Putative uncharacterized protein n=1 Tax=Malasse... 252 1e-65 UniRef50_C4JWD7 Putative uncharacterized protein n=1 Tax=Uncinoc... 231 3e-59 UniRef50_C2CPA1 Ribonuclease D n=1 Tax=Corynebacterium striatum ... 207 5e-52 UniRef50_Q8LMQ9 Putative nucleolar protein n=1 Tax=Oryza sativa ... 181 5e-44 UniRef50_UPI00006CF2A3 3''''-5'''' exonuclease family protein n=... 168 4e-40 UniRef50_Q7UZS1 Putative ribonuclease D n=3 Tax=Cyanobacteria Re... 156 1e-36 UniRef50_D2A545 Putative uncharacterized protein GLEAN_15251 n=2... 153 7e-36 UniRef50_B7FYJ7 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 153 8e-36 UniRef50_A2EJK5 HRDC domain containing protein n=1 Tax=Trichomon... 140 6e-32 UniRef50_Q23PU6 3'-5' exonuclease family protein n=1 Tax=Tetrahy... 136 1e-30 >UniRef50_P09155 Ribonuclease D n=146 Tax=Gammaproteobacteria RepID=RND_ECOLI Length = 375 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 375/375 (100%), Positives = 375/375 (100%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI Sbjct: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS Sbjct: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL Sbjct: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR Sbjct: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM Sbjct: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE Sbjct: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 Query: 361 LMAEALHNLLQEYPQ 375 LMAEALHNLLQEYPQ Sbjct: 361 LMAEALHNLLQEYPQ 375 >UniRef50_C9XUE4 Ribonuclease D n=1 Tax=Cronobacter turicensis RepID=C9XUE4_CROTZ Length = 409 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 283/373 (75%), Positives = 326/373 (87%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQMITT+DALA+LCE R A+ALDTEFVRTRTYYPQLGLIQL+DGE++ALIDPL I Sbjct: 37 LNYQMITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI 96 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T+W+P +A+L+D +ITKFLHAGSEDLEVF N FG +P P IDTQ+LA+F G P+S GFA+ Sbjct: 97 TEWAPFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFAT 156 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++GV LDKSESRTDWLARPLTERQC+YAAADVWYLLPI KLM + +GWL AA+ Sbjct: 157 LVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAI 216 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +ECRLM RR EV+ P++AWR+ITNAWQLR RQLACL+LLA WRLRKARERD+AVNFVVR Sbjct: 217 NECRLMTQRRGEVLDPDEAWREITNAWQLRPRQLACLKLLAGWRLRKARERDMAVNFVVR 276 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EE+LW VAR+MPGSLGELD LGLSGSEIRFHGKTLLALV +AQ L EDALP+P+ NL+DM Sbjct: 277 EENLWKVARHMPGSLGELDGLGLSGSEIRFHGKTLLALVAQAQALLEDALPEPLANLVDM 336 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGYRK FK IK+L+ + SE HKISAEL+ASRRQINQLLNWHWKLKPQN LPELISGWRGE Sbjct: 337 PGYRKVFKEIKALVQETSEAHKISAELMASRRQINQLLNWHWKLKPQNQLPELISGWRGE 396 Query: 361 LMAEALHNLLQEY 373 L+ EAL LLQ Y Sbjct: 397 LLGEALKTLLQNY 409 >UniRef50_C6C608 Ribonuclease D n=19 Tax=Gammaproteobacteria RepID=C6C608_DICDC Length = 403 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 248/373 (66%), Positives = 302/373 (80%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+ITTDD L+ +C R P +ALDTEFVRTRTYYPQLGLIQLFDGE L+LIDPL I Sbjct: 30 LNYQLITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSI 89 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T W P +L DP++TK+LHAGSEDLEVFLN FG LP P +DTQIL AF G+P+S+GFA+ Sbjct: 90 TVWQPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLSYGFAA 149 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V +Y VTLDKSESRTDWLARPL+E+QC+YAAADV+YLLP+ +L+ ET ++GW AAL Sbjct: 150 LVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAAL 209 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DECR + R+Q+V+APE A+R+I NAWQL+ R LACLQ LADWRLRKARERD AVNF+VR Sbjct: 210 DECRQLCQRKQDVLAPEQAYREIGNAWQLKGRHLACLQKLADWRLRKARERDSAVNFIVR 269 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EEHL VARY+PGSLGEL +LGLSG EIR+HGKTLL LV + QT+ P+P++NL+D Sbjct: 270 EEHLGQVARYLPGSLGELGALGLSGPEIRYHGKTLLELVAETQTMDAAEYPEPVINLIDY 329 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGY+KAF+ IK L+ +E +SAELLASRRQIN+LL+WHWKL PQ ++PEL+SGWRG Sbjct: 330 PGYKKAFREIKDLVQQQAERSGLSAELLASRRQINRLLSWHWKLAPQTHVPELLSGWRGR 389 Query: 361 LMAEALHNLLQEY 373 L E L +L Y Sbjct: 390 LFGEPLKGILANY 402 >UniRef50_B7VI13 Ribonuclease D n=22 Tax=Gammaproteobacteria RepID=B7VI13_VIBSL Length = 397 Score = 419 bits (1077), Expect = e-116, Method: Composition-based stats. Identities = 174/372 (46%), Positives = 250/372 (67%), Gaps = 1/372 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++YQ+IT L +C+ R + LDTEFVRTRTYYPQLGLIQLFDGE L+LIDP+ + Sbjct: 26 VDYQIITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIAL 85 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + +P +L+D S+ K LHA EDLEVF N FG P P++DTQI+AAF G +S GFA+ Sbjct: 86 DEMTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA 145 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V E+ GV LDKSESRTDWLARPL+++Q +YAAADV YL+P+ KL+ + +GW AA Sbjct: 146 LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQ 205 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L +R P++A+ DI AWQL+ +QLA L+ LA WRL++A +RDLA+NFV + Sbjct: 206 QESDLQVAKRIRKANPDNAYLDIKGAWQLKPQQLAILRPLATWRLKEAIKRDLALNFVFK 265 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E+ LW+VAR+ ++ G +R HG + ++V+ A+ PE+ P P+ LMD Sbjct: 266 EQDLWAVARFAMKDPKHMEQEGFDYRSVRRHGAKISSIVKLAEHTPEEEYPAPVERLMDY 325 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN-LPELISGWRG 359 PGY++ FK +K + S+ ++ E LAS++Q+NQ+L+W WK LP+++ GWR Sbjct: 326 PGYKQLFKVLKDEVKTASQHSGLATEFLASKKQLNQVLSWIWKHDRNPEKLPDVMQGWRL 385 Query: 360 ELMAEALHNLLQ 371 +++ E L+ ++ Sbjct: 386 DVVGEKLNKAIK 397 >UniRef50_D0M5H9 Ribonuclease D n=15 Tax=Gammaproteobacteria RepID=D0M5H9_VIBSE Length = 388 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 175/372 (47%), Positives = 247/372 (66%), Gaps = 1/372 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+IT + L +C R + LDTEFVR RT+YPQLGLIQLFDG L+LIDP + Sbjct: 17 VNYQIITKNKDLEEVCIHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDPTEL 76 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD +P A+L+D S+ K LHA EDLEVF N FG P P++DTQ++AAF G +S GFAS Sbjct: 77 TDMTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAS 136 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VEEY GV LDKSESRTDW+ARPLT++Q +YAAADV YLLP+ KL+ + +GW A Sbjct: 137 LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAVQ 196 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L+ +R V E+A+ DI AWQL+ +LA L+ LA WR R+A +RDLA+NF+ + Sbjct: 197 QESDLLVSKRIRVTNEENAYLDIKGAWQLKPSELAILKPLAMWRYREAIKRDLALNFIFK 256 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E L +VAR + ++++ + I HG + A+V++A+ P + P + LMD Sbjct: 257 EGDLLTVARLGLTNFKKMEAEDIDIRAINRHGAKIAAIVKQAKQTPSEEYPAKIERLMDY 316 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN-LPELISGWRG 359 PGY++ FK +K ++ S+ ++ E LAS++QINQL++W WK LP+L+ GWR Sbjct: 317 PGYKQVFKNMKDIVKSASQKSGLATEFLASKKQINQLISWVWKKDCDPEVLPDLMQGWRL 376 Query: 360 ELMAEALHNLLQ 371 +L+ + ++ L+ Sbjct: 377 DLLGDKMNKALK 388 >UniRef50_A5F6R9 Ribonuclease D n=31 Tax=Vibrio RepID=A5F6R9_VIBC3 Length = 381 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 176/370 (47%), Positives = 247/370 (66%), Gaps = 1/370 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+I+ L +C A R + LDTEFVRTRT++PQLGLIQ+FDGE+L+LIDP + Sbjct: 9 VNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL 68 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + +P +L+D S+ K LHA EDLEVF N FG P P++DTQI+AAF G +S GFA+ Sbjct: 69 DEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V++ V LDKSESRTDWLARPL+++Q EYAAADV+YLLP+ KL+ + +GW AAL Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAAL 188 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L +R +V PE A+ DI AWQL+ ++LA L+ LA WR +A RDLA+NFV++ Sbjct: 189 QESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIK 248 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E L +++R S ++ G+ IR H ++A+V+ A P DA P ++ +M+ Sbjct: 249 ETDLLTISRLALRSPKRMEEEGVDPHAIRRHSSKIIAMVKTALETPADAYPPEIVPIMEY 308 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN-NLPELISGWRG 359 PGY++ FK +K + VS T ++ E LAS++Q+NQLL+W WK LP+L+ GWR Sbjct: 309 PGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRL 368 Query: 360 ELMAEALHNL 369 L+ E L+ L Sbjct: 369 PLLGEKLNTL 378 >UniRef50_Q47YC8 Ribonuclease D n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YC8_COLP3 Length = 379 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 155/376 (41%), Positives = 235/376 (62%), Gaps = 4/376 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+I +L +LCE + +A+DTEFVRTRT Y +LGL+Q+ DGE LALIDPL I Sbjct: 1 MHYQLIEDQKSLNNLCEQLVKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLAI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +P A+L + +ITK LHA SEDLEVFL P LID+QI+ +F G +S G+A+ Sbjct: 61 DDLAPFWALLTNENITKVLHACSEDLEVFLTAGNCKPVNLIDSQIMMSFLGHGLSLGYAA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MV+ ++ + LDKSESRTDW RPLTE+Q +YA+ADV +L I KL+ E +G+L A Sbjct: 121 MVKHFTDIELDKSESRTDWTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGFLAYAQ 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + M ++ + + + +I W+L +QL L+ LA WR ++A++RDL + FV + Sbjct: 181 IETQSMIDKKFTPIIESEMYLNIKMNWRLNPKQLNLLKYLASWRFQQAKKRDLPLGFVAK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + L ++A+ P S+ + +L G+ +IR GK +LA++ +A+ + P + L + Sbjct: 241 DHTLMALAQSNPESVNAMLTLEGVETLDIRHKGKAMLAVLSQAEQAEVSSYPDKIDRLDE 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP---ELISG 356 PGY++ FK +K+ + SE ++ E +AS++QINQ L W + L N +LI+G Sbjct: 301 YPGYKQIFKKLKTFLITASEQQGLAIENVASKKQINQFLTWQFDLNDARNSSAKVDLITG 360 Query: 357 WRGELMAEALHNLLQE 372 WR EL + L + Q+ Sbjct: 361 WRYELFGQTLLDFAQQ 376 >UniRef50_UPI0000E0E878 ribonuclease D n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E878 Length = 382 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 150/378 (39%), Positives = 224/378 (59%), Gaps = 5/378 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y +I + DAL C+ IA+DTEFVRTRT+YP +GL+Q++DG +ALIDP+ I D Sbjct: 5 YLLIDSYDALLQYCQQAAQQSVIAVDTEFVRTRTFYPHIGLVQIYDGVDIALIDPIAIDD 64 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 SPL ++ +P + K LHA SEDLE F G +P+PL DTQ+ A G S G+ +V Sbjct: 65 LSPLSQLMTNPQVIKVLHACSEDLETFEFALGVMPEPLFDTQVAAQLAGLGNSVGYGRLV 124 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E +TL+K ESRTDW+ RPL+ Q YAA DV YLLP KL + EAS L DE Sbjct: 125 ELLQDITLEKGESRTDWIRRPLSPEQLIYAAEDVLYLLPCYFKLAEKLEASQQLHWVYDE 184 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + R++ + P+ A+ + N W+L L +QLLA WRL ARE D+ NF++RE+ Sbjct: 185 VNQLIRRKRANIDPKHAYLLLKNTWKLSPLNLYAMQLLAQWRLTFAREHDITQNFILREQ 244 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 ++ +A +PG G L +L ++ E R H T+L +++ A+ PE P + + D+P Sbjct: 245 SMFDIASCLPGHKGALFALDVVTPQEARRHCDTILGIIKTARQAPESDYPDAVQRITDVP 304 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHW----KLKPQNNLPELISGW 357 Y+K AIK++ ++ +++ + + AS+RQINQ+++W + P+L+ GW Sbjct: 305 LYKKHVAAIKAICSEAAQSVGVDSTYFASKRQINQVVSWFVFAFDDTRALGMEPDLLVGW 364 Query: 358 RGELMAEALHNLLQEYPQ 375 RGEL+ + L Q + + Sbjct: 365 RGELVGAKITALAQHFTR 382 >UniRef50_C4K3X6 RNase D, processes tRNA n=9 Tax=Enterobacteriaceae RepID=C4K3X6_HAMD5 Length = 387 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 190/374 (50%), Positives = 261/374 (69%), Gaps = 1/374 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NY++ITT++ L +CE A+ALDTEFVRT+TYY +LGLIQL+DG ++LIDP I Sbjct: 12 LNYRLITTNEDLHHICELAVLRKAVALDTEFVRTKTYYAELGLIQLYDGHRVSLIDPFLI 71 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T+W+P +L++ I KFLH+ ED+E+F + F LP+PLID+QILAAF GRP+S GF+ Sbjct: 72 TEWAPFYCLLKNKKIVKFLHSAGEDIEIFFHFFKTLPEPLIDSQILAAFTGRPVSCGFSI 131 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+E+ G+ L+K+ESRTDWLARPL+++QC+YAA DV+YLLP+ LM + E SGW+ A Sbjct: 132 LVKEFQGIVLNKAESRTDWLARPLSQKQCDYAAEDVFYLLPLANALMKKIETSGWMEAVK 191 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC L+ RR ++ PE A+RDI NA QL QL CL+ LA WRL AR++++A+NFV++ Sbjct: 192 EECELLCQRRSQIQDPEMAYRDIGNASQLNPGQLICLKKLASWRLVYARKKNVAINFVIQ 251 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E +LW VARY P SL EL LGL IR HG TLL LV ++Q ED + L Sbjct: 252 ESYLWKVARYQPTSLSELFHLGLDRRTIRQHGLTLLGLVTESQKTKEDPSLV-IAYLNHE 310 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P Y+K FK IK LI + +S EL+ SR+ INQLLNWH+ L P+ P L++GWR + Sbjct: 311 PVYKKIFKEIKDLIQSIGALIGLSHELIGSRKHINQLLNWHFGLIPKEKRPLLLTGWRAQ 370 Query: 361 LMAEALHNLLQEYP 374 +++ L +L +P Sbjct: 371 VLSLELTKILDRHP 384 >UniRef50_B8F419 Ribonuclease D n=8 Tax=Pasteurellaceae RepID=B8F419_HAEPS Length = 375 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 168/371 (45%), Positives = 239/371 (64%), Gaps = 3/371 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + YQ + + +LA +C V IALDTEFVRTRTYYP+LGLIQLFDG+ + LIDPL I Sbjct: 5 IEYQWVDDNPSLAQMCLQVAEQSVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSI 64 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD+SP A+L + ++ K LHA EDLEVF + F +LPQP++DTQ++A F G +S GFA Sbjct: 65 TDFSPFTALLANENVLKVLHACGEDLEVFQHYFKQLPQPMLDTQVMAGFVGLGISIGFAK 124 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + Y V LDK SRTDWL+ PL+E Q +YA ADVWYLLPI KL + + W A + Sbjct: 125 LALHYLEVELDKGASRTDWLSHPLSEIQLQYACADVWYLLPIYHKLAEDLAKTPWQTAVV 184 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC + +RQ V P A+++I+NAWQL ++LA LQ+LA WR+ +A +RDLA+NF+++ Sbjct: 185 EECATLLAKRQIVEDPNKAYKEISNAWQLNQQELAILQILAKWRIEEAEKRDLALNFIIK 244 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E+ L +A+ P L + +E+R HGK +L LVE+ + + + P + L+D Sbjct: 245 EQSLLQIAKLQPKHTSILLEF-MHPNEVRIHGKKILWLVEQGKQILPENYPPVIRRLVDE 303 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 GY+ FK ++ +T+V ++ ELLAS+RQ+NQL W+ + + LPEL+ GWR E Sbjct: 304 AGYKTTFKRLQKRLTEVCPE-NLAIELLASKRQLNQLFKWYRNGQDRQKLPELLCGWR-E 361 Query: 361 LMAEALHNLLQ 371 L + Sbjct: 362 QFGNKLLPEID 372 >UniRef50_Q3ICG4 Putative RNase D, processing tRNAs n=3 Tax=Alteromonadales RepID=Q3ICG4_PSEHT Length = 376 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 153/374 (40%), Positives = 227/374 (60%), Gaps = 5/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+I T + L + E ++ P +A+DTEF+R RT YP++ LIQ++DGEHLALIDPL Sbjct: 1 MHYQLIETQNQLNTFVEQIKNKPVLAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLAE 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 IL+DP++ K H+ SED+EVF G +P PL DTQ G GFA Sbjct: 61 LSLFDFWQILKDPAVLKVFHSPSEDIEVFQKYAGFVPTPLFDTQFALQILGEGNCMGFAL 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MV+ + +DKSESRT+WL RPLT +Q EYAAAD ++LLP ++ +A+ + Sbjct: 121 MVKTLLDIEIDKSESRTNWLQRPLTNKQLEYAAADAYHLLPCFNLIIDSVKAADLFNIVI 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L+ +R+ E ++DI NAWQLR +LA L+ LA WR KA ++LA+NFV++ Sbjct: 181 SESELVANKREFQTPDELLYKDIKNAWQLRPHELAILRELAVWRRNKAIRKNLALNFVLK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 E ++ +A+ P SL L + G+ E+ G +L +E+A+ LPE+ P + L+D Sbjct: 241 EHNMTEIAKRGPASLNALRQIPGVEAIEVNRSGVEILKCIEQAKALPEEQHPAILKRLID 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL----KPQNNLPELIS 355 P Y+K K IK I V++ H I +++AS++Q+NQL++W+WKL K Q+ P+L+S Sbjct: 301 FPSYKKVAKEIKQKINKVAKEHNIPEDVMASKKQVNQLISWNWKLSAAQKEQHIKPDLLS 360 Query: 356 GWRGELMAEALHNL 369 WR + + L Sbjct: 361 SWRYSFVKDTLKEW 374 >UniRef50_Q15S24 Ribonuclease D n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15S24_PSEA6 Length = 400 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 159/374 (42%), Positives = 228/374 (60%), Gaps = 5/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Y ITTD+ L + C + AIA+DTEFVRTRT YPQLGLIQ++DG+ +ALIDPL I Sbjct: 11 VQYISITTDETLNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQIYDGQQIALIDPLEI 70 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +D++ LKAIL D +I K LH+ SED+E F+ +P+P+ D+Q AA G S G+A Sbjct: 71 SDFTALKAILTDENIVKVLHSCSEDIETFICALDIVPRPIFDSQFAAAITGMGPSLGYAK 130 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE + +DK ESRTDWLARPL+ +QC+YAA DV YL + L +T A G Sbjct: 131 LVEVMLDIQVDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLAQGRQAWVF 190 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + ++ V E + +I N W + + L LQ L WR ++A++RDLA+NFVVR Sbjct: 191 AEMENLTRKKLSQVPYELLYLNIKNNWHVTGKSLYVLQQLTAWRAKEAQQRDLALNFVVR 250 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 E +L VA+ +P S L + GL+ EIR +G+ +L +V A+ + E A PQP+ L+D Sbjct: 251 EANLVEVAKRLPASKNALHQISGLTPQEIRINGQAMLDIVAAAEHVDESAYPQPVERLVD 310 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN----LPELIS 355 ++K A++ + +E + EL+ S++QINQL+ W W L LP+L+ Sbjct: 311 FSRFKKVAAAVRQVCVQTAEKLGVPVELIGSKKQINQLIKWCWFLDDDTRAQGLLPDLLE 370 Query: 356 GWRGELMAEALHNL 369 GWRGE + AL + Sbjct: 371 GWRGEHLQAALAKV 384 >UniRef50_A0YC02 Ribonuclease D n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC02_9GAMM Length = 384 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 131/366 (35%), Positives = 200/366 (54%), Gaps = 3/366 (0%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 I ++ L C + +ALDTEF+RT T+YP L+Q+ +G LIDPL I D+S Sbjct: 15 YIDDNETLRKFCLQWQHAAVLALDTEFIRTDTFYPIGALLQISEGTGCFLIDPLSIDDFS 74 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL A+L DP+I K LH+ SEDLEVF +F LPQPLIDTQI A G S G+ M E Sbjct: 75 PLTALLTDPAIVKVLHSCSEDLEVFERLFQVLPQPLIDTQIAAGLDGYGFSLGYQKMTEA 134 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 + + K E+R++WL RPLTE Q YAA DV YL + +L E+ G LDEC Sbjct: 135 LLQIHVAKGETRSNWLQRPLTESQIHYAALDVAYLPEMYQQLKQSLESKGRWQWLLDECS 194 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 + + + A ++ + + W+L +RQL L+L+ +WR +AR RD +++++ Sbjct: 195 PLTNGQSDTDAITQYYKKVKSVWKLSSRQLGVLRLVVEWRESEARHRDRPRGRILKDKSC 254 Query: 245 WSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 + +AR P + L S+ + S +R +G+ LL LV L E LP + + P Sbjct: 255 FEIARTQPRDVKALSSIEDVGQSTLRNYGQELLKLVMTGIKLAESELPAQLPKPLP-PQT 313 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 K +K+ ++ +E +++ ELL +R +LL + + LP + GWR +++ Sbjct: 314 GTLLKQLKAHVSHRAEHLQMAPELLVRKRDYEELLRSGFNNR-DYQLPASLCGWRKDVIG 372 Query: 364 EALHNL 369 + L N+ Sbjct: 373 DDLLNI 378 >UniRef50_C0N8D2 Ribonuclease D n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8D2_9GAMM Length = 379 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 110/371 (29%), Positives = 188/371 (50%), Gaps = 9/371 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Q I + L LCE + +A+DTEF R +TYYPQL LIQ+ + + +A +DPL I Sbjct: 1 MTIQFIDSSAGLKDLCEQLAESTWLAIDTEFHREKTYYPQLCLIQVANDDVIACVDPLKI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SPL + +T HA +DLE+ + LPQ + DTQ+ A G G+ + Sbjct: 61 DDLSPLMDVFYRTDMTLVFHAARQDLELLFLLRDALPQQVFDTQLAATVLGYGDQIGYGN 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V++ V LDK+ +RTDW RPL+ Q +YAA DV YL + +L + +G + Sbjct: 121 LVKQCLNVDLDKAHARTDWRQRPLSPEQIDYAADDVRYLRELYHQLEAKLVDTGRINWLK 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++ + PE +W I + +L++ QLA LQ L WR ++A +++L ++++ Sbjct: 181 EDFATLSATETYQSNPESSWLRIKGSGRLKSSQLAVLQQLGVWREQRAIKQNLPRRWIIK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ + +AR+ P SL ++ + GL +I HG+ +L +E + +P++ P Sbjct: 241 DDVMLDLARFSPSSLDAMNKIRGLESRDIDRHGQAILKAIEAGKAVPQEQWPVMKRPQPL 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 A+ L+ + + I+ +A+R+ I L+ + + GWR Sbjct: 301 SNQQDALVDALMGLLRKLCDEQTITPVAVATRKDIEALVR--------DQDSPIKHGWRH 352 Query: 360 ELMAEALHNLL 370 E++ + L L Sbjct: 353 EIVGQKLEQFL 363 >UniRef50_B9CJZ2 Ribonuclease D n=2 Tax=Atopobium RepID=B9CJZ2_9ACTN Length = 376 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 115/366 (31%), Positives = 180/366 (49%), Gaps = 7/366 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 I+T + L S C P +A+DTEF+R +TYYP+L L+Q+ GE +A IDPL I D S Sbjct: 2 YISTQEELISFCLRAAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLSIDDLS 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL + D I K +HA S+DLEV L P+ DTQ+ AAF G +AS+VE Sbjct: 62 PLVRLFEDQKIVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFLGMRQQASYASVVEH 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y GV L K+ES TDW RPL Q YA DV YL I + + L + E Sbjct: 122 YMGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERLMKTNRLGWLMPEMN 181 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 P++A+ + + L RQ+A + + WR +A + ++ +++ +E L Sbjct: 182 AYTAPENFKRDPKEAYLHLKRSNSLTRRQMALAREICAWREERAAQHNIPRKWIISDETL 241 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 + + P + L + + S + ++LA ++ +++P + P + G Sbjct: 242 VEICKRSPATSERLKRIRGTESLSQESVASILAAIKVGRSIPPEECPVIEHHSRPAAGSE 301 Query: 305 KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE 364 + + +L+ VSE I+ +L+A++ + LL Q +L GWR EL+ + Sbjct: 302 GVLELMYALVKIVSEKEGIAPQLIANKNDLADLLA-------QKKDSKLSCGWRHELVGK 354 Query: 365 ALHNLL 370 L LL Sbjct: 355 QLQGLL 360 >UniRef50_C5BMI8 Ribonuclease D n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BMI8_TERTT Length = 393 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 203/378 (53%), Gaps = 9/378 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q ITT L + C+ +A+DTEF+R++TYYP GLIQ+ DG LIDPL D+ Sbjct: 11 QWITTAAELKACCDKWITQRMLAVDTEFMRSQTYYPITGLIQVNDGNTSYLIDPLAFDDF 70 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL ++ +P + K LH+ SEDLEVF G +P+ ++DTQI +A CG S GF +V Sbjct: 71 TPLAELMENPGVLKVLHSCSEDLEVFHRFLGIVPKHMLDTQIASALCGYGFSVGFGKLVH 130 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 G L K E+R+DWL RPL+ Q +YAA DV YL + + L+++ + G L ++C Sbjct: 131 AVLGEELPKEETRSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGRLTWVAEDC 190 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 M + + A +++ I AW+L RQLA L+ LA WR A+ RD+ N V++E Sbjct: 191 EAMLRQFADNQAVDNSDARIKQAWRLSQRQLAILKKLAQWREEVAQRRDVPRNRVIKEHS 250 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +A+ P + +L L G++ IR G L+A ++ +PE LP P+ + Sbjct: 251 LLDLAQRTPDHVAQLRKLDGINERMIRTDGADLIACIQAGMDVPEHELPAPLPRPL-SGS 309 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKP------QNNLPELISG 356 K K ++ ++ +E +++ E+L +R L + L E ++G Sbjct: 310 ENKWAKTVREKVSSEAERLQLAPEILLKKRDYEALTRAFMTPDDINQQIIEARLAEYLTG 369 Query: 357 WRGELMAEALHN-LLQEY 373 WR L+A L +LQ Y Sbjct: 370 WRYNLLAAPLAKVILQSY 387 >UniRef50_Q0F2Y2 Ribonuclease D n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2Y2_9PROT Length = 398 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 111/369 (30%), Positives = 186/369 (50%), Gaps = 1/369 (0%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + I T D L + + +DTEF R T+YP+ L+Q++ +IDP+ I D Sbjct: 7 EFINTPDQLRQAAATMAECQVLCVDTEFHRESTFYPEFALLQIYGNGQCWVIDPITIKDL 66 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +P+ I+ +P+I K HA +D+E+ N G LP PL DTQ+ AA G GF ++V+ Sbjct: 67 APVWDIMLNPAILKVFHAARQDIEIIFNEAGGLPLPLFDTQVAAALLGYGQQVGFGNLVQ 126 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + L K ES TDW ARPLT++Q YAA DV +L+P+ L EA+ +E Sbjct: 127 RITKKLLPKGESFTDWKARPLTKKQMAYAADDVIWLMPVFQHLKERLEAAKRTQWLQEEQ 186 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + DA+ + +L+ R LA LQ +A WR R A++RD+ ++ +E Sbjct: 187 QTLCSPETYQPNDADAFWRVKGFNRLKGRHLAVLQEMAAWRERSAQQRDIPRRRMIADEP 246 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +AR + + + G++ I+ G ++A ++ E++ P + G Sbjct: 247 LLELARRDLLDIETMQRIRGINAGFIKRFGDEIIACWQRGMERTEESWPSMEARRSNTHG 306 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 + + +L+ +E +IS +LAS+ ++ L +W ++ K + + GWR EL+ Sbjct: 307 TDLRLEMLDTLVRLKAEEGEISGTILASKSDLSALASWGYRCKGEPPEVACLHGWRYELV 366 Query: 363 AEALHNLLQ 371 L LL+ Sbjct: 367 GHDLIRLLR 375 >UniRef50_A4SMN8 Ribonuclease D n=2 Tax=Aeromonas RepID=A4SMN8_AERS4 Length = 379 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 167/372 (44%), Positives = 231/372 (62%), Gaps = 6/372 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+IT L ++ P +A+DTEFVRTRTYYPQLGL Q++DGEHLAL+DPL + Sbjct: 10 MHYQLITQQAELEQYLASLADVP-LAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPLTL 68 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +PL L LHA EDLE+ + G LP + DTQ+ AF G +S GF + Sbjct: 69 -DLAPLWQRLGRAGQIAILHASGEDLELIQHEAGHLPNQMHDTQLATAFLGYGVSVGFGA 127 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + +E+ GV L K ++RTDWLARPLTERQ EYAAADV YL+P+ K+M + SG Sbjct: 128 LAKEFLGVDLVKDQARTDWLARPLTERQLEYAAADVLYLMPLYEKVMAKLHESGKFAWFE 187 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 EC+ R+ + P A+ DI NAWQL R+LA L+ LA WR ++A RDLA+NFVV+ Sbjct: 188 QECQNHSARKTQGSDPYQAYLDIINAWQLGRRELAILRELAAWRQQEAVRRDLALNFVVK 247 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E HL+ VA P SL +L+ LGL+ EI+ HGK +L +V +AQ D+ P+P+ L+D Sbjct: 248 ELHLFKVAERRPASLRDLNELGLAPIEIKIHGKRMLDIVAQAQRSEPDSWPEPIRRLVDY 307 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN----NLPELISG 356 P Y+ K IK ++ + ++ I EL+AS++ I+Q W W++ + + P L+ G Sbjct: 308 PQYKAELKRIKGMVEEKAKACNIPPELVASKKIIHQYFTWSWRMSDEERARSDKPMLLQG 367 Query: 357 WRGELMAEALHN 368 WR EL+ L Sbjct: 368 WRHELVGHLLAQ 379 >UniRef50_Q605A6 Ribonuclease D n=1 Tax=Methylococcus capsulatus RepID=Q605A6_METCA Length = 388 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 193/370 (52%), Gaps = 15/370 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 I + LA+ C ++ P IA+DTEF+R +TYYP+ L+Q+ +G A IDPL I D Sbjct: 11 YIDSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLAIEDLR 70 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 ++ +L + +ITK HA +DLE+F + F +P P+ DTQ+ A G P G+AS+V Sbjct: 71 EVECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLVGHPEQVGYASLVSA 130 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 GVT+DK +RTDW RPL+ Q EYAA DV +L + ++ + E G +DE Sbjct: 131 MLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLGRYAWLVDEFA 190 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 ++ V PEDAW+ I +L+ Q A LA WR A++ DL N+++R+E L Sbjct: 191 ALEEPDLYVNRPEDAWQRIGGLDRLKPEQFALAVRLAAWRENTAQQNDLPRNWILRDEAL 250 Query: 245 WSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKA---QTLPEDALPQPMLNLMDM 300 +A P + L +L G+ ++ +G ++ALV+ A Q +P PQP Sbjct: 251 LEIALRRPRNRDALQALRGIDSRMVQRYGDAMIALVQDAGSGQAVP----PQPRRGQRRS 306 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 A+ +L+ H I+ ++ASR+ + +LL + +++ GWR Sbjct: 307 AQTEAILDAMSALVRLRCIEHTINPAVVASRKDLEELLES-------PDGAKVLHGWRRA 359 Query: 361 LMAEALHNLL 370 L+ L L Sbjct: 360 LVGNDLRAFL 369 >UniRef50_P44442 Ribonuclease D n=25 Tax=Pasteurellaceae RepID=RND_HAEIN Length = 399 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 151/373 (40%), Positives = 240/373 (64%), Gaps = 5/373 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +++++T + AL +C + A+ALDTEF+R TY+P+LGLIQL+DGEH++LIDPL IT Sbjct: 29 HFRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLAIT 88 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D+SP A+L +P + K LH+ SEDL VFL F +LP+P+IDTQI+A F G S G A + Sbjct: 89 DFSPFVALLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKL 148 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++Y V +DK +RT+W+ RPL++ Q +YAA DVWYLLP+ L E + W A D Sbjct: 149 AQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRD 208 Query: 182 ECRLMQMRRQEVV--APEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +C L+ + ++ E A+ DI NAW+L +L+ L++LA WR A ERDLA++++V Sbjct: 209 DCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLALSYIV 268 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + EHLW VA+ P + E+ +GL+ +E+R GK +L L+ +A+ + + P+ + + + Sbjct: 269 KSEHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKEILQLLSQARRISSNDYPKSIERISE 328 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK-PQNNLPELISGWR 358 P Y+K + ++ + ++ ++ E++AS+R + +L+ W WK Q+ PEL+ GWR Sbjct: 329 DPRYKKTIRLLQEKVNSLTPE-GLTPEIVASKRTLEELIKWVWKYDCSQDKRPELLIGWR 387 Query: 359 GELMAEALHNLLQ 371 + E L + L+ Sbjct: 388 KPI-GEKLVDALK 399 >UniRef50_B8GL88 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GL88_THISH Length = 396 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 9/370 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 + I T + LA+ C + IALDTEFVR +TYYP+L L+Q+ + LA IDP+ + Sbjct: 13 EIRFIDTAEGLAAFCGEIAGAQWIALDTEFVREKTYYPRLCLVQVATPDALACIDPIALP 72 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D PL A+L DP++TK +HA +D+E+ L G +P P+ DTQ+ + G G+A M Sbjct: 73 DLGPLAALLHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDTQVAVSLLGHGDQIGYARM 132 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V+ Y + LDK +RTDW RPL Q YAA DV +L + ++ + E G L + Sbjct: 133 VQIYLDLELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMILKDLEEKGRLDWLSE 192 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + + + P++AWR I L+ QLA LQ LA WR R+A E+DL +++ + Sbjct: 193 DFAAISEESRYLPDPDNAWRRIKGQKYLKGAQLAVLQALAAWRERQAMEKDLPKRWILSD 252 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP-QPMLNLMD 299 + L +++ P L L + GL ++ HG+TLLALV +A++LP A P +P + Sbjct: 253 DVLTELSQRSPTDLASLAKVRGLEDKTLQRHGETLLALVREARSLPASAWPARPGPSRGI 312 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P + + L+ + + IS +A+R+ + L + L+ GWR Sbjct: 313 GPEHEELVDVAMGLLRHQARINDISPAAIATRKDLEALFR-------EEPDCALLQGWRA 365 Query: 360 ELMAEALHNL 369 + + + Sbjct: 366 RIAGRVILDW 375 >UniRef50_B3PKH0 Ribonuclease D n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PKH0_CELJU Length = 378 Score = 373 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 202/370 (54%), Gaps = 3/370 (0%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 I D LA LC R AIA+DTEF+RT T+YP GL+Q+ DG+ LIDPL I DW Sbjct: 8 IWIERADQLAELCVGWRQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAIADW 67 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL+ +L D + K LH+ SEDLEVF +P PL DTQI AAF G+A++V+ Sbjct: 68 QPLRELLLDGKVIKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLGFGLGYANLVK 127 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 G+ + K E+R+DWL RPL++ Q +YAA DV ++L + KL+ + S L +C Sbjct: 128 TLLGIEIPKDETRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQILKTSQRLEWVKSDC 187 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + +DA++ + AW+LR ++LA L+ L WR +AR+RD+ N +++E Sbjct: 188 ADLVEQARAPDHFDDAYQKVGFAWKLRPQELAVLRQLCIWRETQARQRDIPRNRLIKEPS 247 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 LW +AR P L +L + + +R G+TLLA+ + P+ + + Sbjct: 248 LWDIARKKPRDLQQLQQIADIPQRTLRNDGETLLAITKSQLESEPSTWPERLDPPL-AQS 306 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 KA+K + D ++ I AE+L +++ ++ K LPE + GWR L+ Sbjct: 307 EGPLLKALKQFVRDKADAELIPAEVLIRKKEYEAIVRSGMKG-GDYRLPERLKGWRYTLI 365 Query: 363 AEALHNLLQE 372 E L + Q+ Sbjct: 366 GEGLLQVAQD 375 >UniRef50_C7RC18 Ribonuclease D n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RC18_KANKD Length = 384 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 197/373 (52%), Gaps = 2/373 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++ + ++ + L LC++ A +A+DTEF RT TY+ +L LIQ++DG+ + LIDPL Sbjct: 13 VHVETVSDPERLQELCQSWLALKELAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAF 72 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L + S+ K LH+ SEDLE + +G + DTQI A+ G +S G+ + Sbjct: 73 DDLSALTELFASTSVVKALHSCSEDLEALYHQYGFEFNQVFDTQIAASLDGIGLSVGYGN 132 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE + V LDK ++TDWL RPL++ Q YAA DV YL+P+ +L G + Sbjct: 133 IVEHFLSVVLDKEHTKTDWLQRPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKGLFECVI 192 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++ + + +A+ + A++L QL LQ LA WR AR+ ++ FV R Sbjct: 193 EDVNSIFAAIIQADDYAEAYLKVKGAFRLNQFQLNRLQKLAQWRETLARDNNIPKTFVFR 252 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + HL V++ S+G+L S+G IR +G ++ +E A + ++ P+P+ + Sbjct: 253 DHHLIEVSQKEKTSIGDLLSMGCHRGSIRKYGAEMIHQIELADQVDKEQWPEPLQPFHKI 312 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P + F A+K+ + V+ + I AE L +RR I + K + N + WR Sbjct: 313 PKSKAMFNALKAEVEKVANLNSIPAEALCNRRLIEYYIKMTLGFKGRPN--RFWNSWRQR 370 Query: 361 LMAEALHNLLQEY 373 L+ E +QE+ Sbjct: 371 LLEEPFKQAMQEF 383 >UniRef50_A4GIY0 Putative ribonuclease D n=1 Tax=uncultured marine Nitrospinaceae bacterium RepID=A4GIY0_9DELT Length = 386 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 128/368 (34%), Positives = 193/368 (52%), Gaps = 4/368 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 ITT D L + CE +++ + +DTEFVR RTY+ + GLIQ+ GEH A IDP+ + D + Sbjct: 2 YITTTDQLKTFCENIQSADVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIALPDMT 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL +L+DP+ K HA +DLE+ + G++ P+ DTQI AA G FA +V + Sbjct: 62 PLLELLKDPTKVKVFHAARQDLEILVRFCGQVIPPIFDTQIAAALVGWGTQISFAKIVYK 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 G + KSE+ TDW RPL++ Q EYA DV YL+P+ KL+ + G L E Sbjct: 122 ALGKKIHKSETYTDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVN 181 Query: 185 LMQMRRQ-EVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + P + I N LR R LA LQ +A WR +A +RD ++R+E Sbjct: 182 AWEDPKTFALPDPYQRFMKIKNLRSLRPRNLAVLQEIAAWREGEAVKRDCLAKAIIRDET 241 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +AR P L + G E+ G ++L+ +E+A LPE L + + Sbjct: 242 LLEIARKAPRDAKTLSGIRGFYQKELNKGGGSILSAIERAMELPESDLVE-LPESNGHAT 300 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 R + + + + SE KI +LA R+QI+ + H++ K + L GWR EL+ Sbjct: 301 TRGVEELLSAYVQIRSEELKIEPSVLADRKQIHSFVA-HFEKKEEMEEHFLFQGWRKELI 359 Query: 363 AEALHNLL 370 + +LL Sbjct: 360 GSPMFSLL 367 >UniRef50_B5JVS3 Ribonuclease D n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVS3_9GAMM Length = 384 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 117/373 (31%), Positives = 198/373 (53%), Gaps = 8/373 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 + Q I +L +LC+ + + LDTEF+R +TYYPQL LIQ+ + + +A IDPL I Sbjct: 3 DIQYIQDTASLKTLCQQLAGSEWLTLDTEFLREKTYYPQLCLIQIANHDLIACIDPLAID 62 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D +PL A+L D SI K LHA +D E+ + P+P+ DTQ+ A+ G G+A + Sbjct: 63 DLTPLYALLHDESIVKVLHAAVQDQEILYQSSQQPPKPVFDTQVAASLLGYGDQMGYAKL 122 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE+ GV LDKS+SRTDW RPL E+Q +YAA DV +L I L E E G Sbjct: 123 VEKICGVQLDKSQSRTDWSRRPLNEKQIDYAADDVRHLREIYQHLKTELERLGRSDWLQK 182 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + ++ P+ A++ + +LR +QL L+ LA+WR ++A +++ ++ + Sbjct: 183 DFDDLANPQRYDPDPDSAYKRVKQYRRLRPKQLVILKALAEWREKRAMDKNKPRKWIASD 242 Query: 242 EHLWSVARYMPGSLGELDSLGL-SGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L + + P ++ E+ L S ++ G+ +L L++ AQ P++ P Sbjct: 243 DLLMDLCKIQPKTVAEIGQLRSASEGFVQHQGQYILDLMQSAQQTPQEQWPVLPSYQALT 302 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P + + +++ + I+ L SR+Q+ QL+ + + L+ WR Sbjct: 303 PNQEAQVDYLMAAAKLIADDNNITTGSLVSRKQLEQLVQGNRDI-------PLMKSWRYT 355 Query: 361 LMAEALHNLLQEY 373 ++ ++L NLL+ + Sbjct: 356 VLGQSLVNLLEGH 368 >UniRef50_Q21L29 Ribonuclease D n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L29_SACD2 Length = 386 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 134/372 (36%), Positives = 211/372 (56%), Gaps = 3/372 (0%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 I+T + L CE ++ +A+DTEF+R++TYYP GLIQ+ DGE L+DP I D+ Sbjct: 11 HWISTVEELEECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVNDGEANYLLDPTTIDDF 70 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 SP IL D I K +H+ SEDLEVF + FG LPQ L DTQI AF S GFA MV+ Sbjct: 71 SPFAEILVDDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFVNLGYSMGFARMVQ 130 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 GV L K+E+R+DWL RPL+ Q YAA DV YL + KL+ E +A L E Sbjct: 131 GVLGVELPKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLLTELKAKERLDWVFGEG 190 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + + P+ ++ + NAW+L +QLA Q L +WR A++RD N +V+E Sbjct: 191 KTIVKNFSDNLDPKLSYLRVKNAWKLNAKQLAIFQNLCEWRELTAQKRDKPRNRIVKENT 250 Query: 244 LWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L+++A P + +L + G+S IR G+ LL L+E+A + LP+ + + Sbjct: 251 LFAMALKRPKHISQLRNYEGMSDRVIRTDGEYLLRLIERADKIEASDLPELLPKPL-TSA 309 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 K KA+++ + V++ I++E+LA +++ + ++ + + + + PE WR L+ Sbjct: 310 ENKRVKALRAEVQKVADEIGIASEILARKKEYDYIVR-DYLARGEWSYPEGFPQWRQALL 368 Query: 363 AEALHNLLQEYP 374 + ++ ++ P Sbjct: 369 TDLINETIKVEP 380 >UniRef50_B4RU88 Ribonuclease D n=2 Tax=Alteromonas macleodii RepID=B4RU88_ALTMD Length = 385 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 151/383 (39%), Positives = 227/383 (59%), Gaps = 9/383 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M YQ+ITT + L +CEA + A+ALDTEFVRT+T P LGLIQL+DG L LIDPL I Sbjct: 1 MQYQLITTFEHLEKVCEAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + P A+L + + K LH+ SEDLE FL F +P P+ DTQI + S G+A Sbjct: 61 DNMQPFVALLENTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSLGYAK 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++LDK ESRTDWLARPL E Q YAA DV YLLP +L +A G + Sbjct: 121 LVELLCEISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGKVHWIY 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E L+ +++ + + A+ I N+W+L + QL LQ LA WRL AR++DLA+NFV + Sbjct: 181 EEVALLVEKKRAQMPEDFAYLSIKNSWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQ----TLPEDALPQPML 295 E HL+ A+ + L + G++ +R +G T++ L+E+A+ PE + Sbjct: 241 EGHLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEARARYAQTPEKLRLPIVQ 300 Query: 296 NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNL----P 351 L+D+ Y+K +K++ +++ + ++ +++AS++Q+NQLL W+W + + P Sbjct: 301 RLIDIAKYKKYLAELKTISEQIAKDNGVTTDVIASKKQLNQLLKWYWFPVDETRVQGLKP 360 Query: 352 ELISGWRGELMAEALHNLLQEYP 374 +L+S WR L + LL + P Sbjct: 361 DLLSTWRAPLFRPHVARLLGDEP 383 >UniRef50_Q5QWP5 Ribonuclease D n=2 Tax=Idiomarina RepID=Q5QWP5_IDILO Length = 390 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 145/378 (38%), Positives = 214/378 (56%), Gaps = 7/378 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y+++TT D L LC+ A+D+EFVR RTYY QLGL+Q+ A+IDPL Sbjct: 13 QYRLVTTTDDLQDLCQQAVKCGWFAIDSEFVRERTYYAQLGLLQIHANGTTAVIDPLADI 72 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLE-VFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D PL ++ + LHAG ED+E F G P+ + D+QI A FCG S G+A Sbjct: 73 DLEPLWQLISGDEVETVLHAGGEDIELFFQQSSGRQPKQIFDSQIAAGFCGLGDSMGYAR 132 Query: 121 MVEEYS-GVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +V+ GV LDKS SRT+WL RPL++ Q +YAAAD YL + L E G L Sbjct: 133 LVDALFDGVELDKSLSRTNWLKRPLSDEQLDYAAADASYLAIMYPYLKALCEEKGVLDIV 192 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +E ++ +R + + + + NAWQL RQLA L++L WRL KARERD+ + F+ Sbjct: 193 YEESQIQVRKRTQSWPDDLLYLGVGNAWQLNPRQLAALKILTPWRLHKARERDIPLGFIA 252 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFH-GKTLLALVEKAQTLPEDALPQPMLNLM 298 ++ L +AR MP + EL + R + G+ ++ +++A+ +PE PQ + L Sbjct: 253 KDGVLLELARRMPKNDDELSRIPDLAPMSRKYSGRDIIRCIQQAEQVPESEFPQTLERLD 312 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN----LPELI 354 DM GY+ FKAIK +T+++E+ I A L+ASR+QIN +N+HW+ Q P+L+ Sbjct: 313 DMEGYKPTFKAIKKAVTELAESLHIPASLVASRKQINDFINFHWQYSTQQQQRLPQPDLM 372 Query: 355 SGWRGELMAEALHNLLQE 372 GWR + L ++ + Sbjct: 373 VGWRQHAIGAELQAIISK 390 >UniRef50_A4VJA7 Ribonuclease D n=25 Tax=Bacteria RepID=A4VJA7_PSEU5 Length = 401 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 132/373 (35%), Positives = 204/373 (54%), Gaps = 4/373 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Q + D LA LC R P +A+DTEF+R T+YP GL+Q+ DG LIDPL + Sbjct: 30 IETQWVVDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAV 89 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 DW P +L D ++ K LHA SEDLEV L + G LPQPL DTQ+ A + S G++ Sbjct: 90 RDWHPFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGFSMGYSR 149 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ G+ L K E+R+DWL RPL+E Q YAA D +L + L+ + L Sbjct: 150 LVQAVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLSDDKR-AWVL 208 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++ + Q PE+A+R++ AW+L+ +QLA L++L WR R+AR R+ N V+R Sbjct: 209 EDGAELVANLQRESDPEEAYREVKQAWRLKPQQLAVLKVLTAWRERQARARNQPRNRVLR 268 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 E LW +AR P L L + + +R G+ LLA++ +A PE P + + Sbjct: 269 EASLWPLARTQPCDLVTLARIDEMHPRTVRQDGEALLAMIREAAATPEQDWPAALPEPLP 328 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 + K ++++ ++ I+ EL+ ++ + LL + P LP+ + GWR Sbjct: 329 L-EVSGVLKKLRAVGQREAKALDIAPELMLRKKTLEALLKSGYPDGP-YQLPDSLRGWRR 386 Query: 360 ELMAEALHNLLQE 372 E M +AL ++L++ Sbjct: 387 ERMGQALLDVLEK 399 >UniRef50_A4BJR0 Ribonuclease D n=1 Tax=Reinekea blandensis MED297 RepID=A4BJR0_9GAMM Length = 380 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 198/371 (53%), Gaps = 4/371 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Q I + ALA + + A IALDTEFVRT ++Y LGLIQ+ + + LIDPL I Sbjct: 4 QFQWIDNNAALAQVADEWAAASVIALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQIN 63 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 DW+PL +L DP+I K LHA SED EV + G Q + DTQI A F G P+ +A + Sbjct: 64 DWAPLVRVLSDPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFLGHPVQMSYARL 123 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE V L K +R+DWL RPL + QC YAAADV +L + + + + Sbjct: 124 VEAICDVELPKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQLKEQNRYAWVAE 183 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + M + V P+ ++ + AW+L+ +L LQLL +WR AR + ++++ Sbjct: 184 DSQRMVSNNRPV-PPQSYYQKLRGAWKLKGERLLVLQLLCEWRENLARATNSNRGRILQD 242 Query: 242 EHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L ++A MP S L + + +IR +G L+A++E+A+ + P+ + + + Sbjct: 243 KDLITLAEKMPTSRSMLQKQVNIPSRKIRLYGDELIAMIERARDSRREDWPERIDSPLP- 301 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 + K ++ ++ V+E + AE+LA R+ + L + +P++ +GWR E Sbjct: 302 ADQAQLLKDVRQVVNTVAEQLNLPAEILARRKSLEAWLRSGAR-TGDYEVPDIFTGWRQE 360 Query: 361 LMAEALHNLLQ 371 + + + ++ Sbjct: 361 FLVDPISQCIR 371 >UniRef50_A0KXU5 Ribonuclease D n=21 Tax=Shewanella RepID=A0KXU5_SHESA Length = 388 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 155/368 (42%), Positives = 223/368 (60%), Gaps = 5/368 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +Q ++ + +L +L + P + LDTEFVRTRTYY +LGLIQ +DG+ LALIDP+ + D Sbjct: 23 FQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVALPD 82 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S ++L +P+I K +H+ SEDLEVF + P PL D+QI A+ CG G+A +V Sbjct: 83 LSAFWSLLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGHGLGYAKLV 142 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G +DK ESRTDW+ RPLTE Q YAA DV YL + +L + +A L +E Sbjct: 143 ETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEE 202 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 M R + A+ + NA+QL QLA L++LA WRL KA RDLA+ FV+++ Sbjct: 203 GERMTEGRLATPDMDTAYLRVKNAFQLTEHQLAYLKVLAKWRLEKALARDLALGFVIKDH 262 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L ++A+ P S+G+L L L+ E R HGK +L +++ A P+ + L P Sbjct: 263 GLIALAKKQPKSMGDLLKLNDLTEQEKRIHGKDILRVMQTA---DLSNPPELVDVLALKP 319 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 GY+ AFK IK+ ++++ E H I E+L S+R I++ L W W K Q LP ++SGWRG++ Sbjct: 320 GYKSAFKNIKTCLSELCEQHAIPMEMLGSKRHIHEYLQWRWD-KQQGELPTVLSGWRGQI 378 Query: 362 MAEALHNL 369 AE+L L Sbjct: 379 AAESLAKL 386 >UniRef50_C8WAD1 Ribonuclease D n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WAD1_ATOPD Length = 379 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 179/371 (48%), Gaps = 7/371 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+ I T + L + CE + +A+DTEF+R +TY+P+L L+Q+ G +A IDPL I Sbjct: 1 MDALYIATSEELFAFCERAKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPLLI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +PLK +L +P I K LHA S+DLEV L P+ DTQ+ AAF G +A Sbjct: 61 DDLTPLKELLENPEIVKILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGMRQQVSYAG 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++ V L K+ES TDW RPL + Q YA DV YL I +++ + L Sbjct: 121 LVENFANVKLAKAESLTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDRLSWLK 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E Q P A+ + + L RQLA + + WR A +RD+ +V+ Sbjct: 181 PEMDQHTNIDQYRRDPYQAYLRLKRSGSLTRRQLAIAREVCAWREEIAAKRDVPRKWVLS 240 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 +E + + R +P + L + + + LL +++ Q P P+ + Sbjct: 241 DELIIEICRRVPTTSDRLRKIRGTEQISQGGVVHLLDAIKRGQKTPAGQCPKIEHHAHPS 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 G + + +LI VSE I++ L+A+ + L + L +GWR + Sbjct: 301 AGSEGVVELMYALIRIVSEKEGIASPLIAN-------KDDLTDLLLDKDDARLKTGWRYQ 353 Query: 361 LMAEALHNLLQ 371 L+ + L LL Sbjct: 354 LVGKQLVGLLN 364 >UniRef50_A6FH72 RNase D, processes tRNA n=1 Tax=Moritella sp. PE36 RepID=A6FH72_9GAMM Length = 376 Score = 362 bits (931), Expect = 8e-99, Method: Composition-based stats. Identities = 156/374 (41%), Positives = 222/374 (59%), Gaps = 6/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y ++ L + +A+DTEF+R RTYYP LGL QL+ G L+DPL + Sbjct: 1 MEYILVEDQITLQKMIAQCAEVEVLAIDTEFIRQRTYYPILGLFQLYTGTETYLVDPLAV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L +L + LHA SEDL+VF+ V + P DTQI AAFCG S GF Sbjct: 61 EDLSSLWQLLDRHPV--VLHACSEDLDVFMTVANKFPDFFHDTQIAAAFCGLGSSLGFGG 118 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V EY +TLDK ESR++WLARPLTE+Q YAAADV++LLP +L + G+ L Sbjct: 119 LVAEYQKITLDKGESRSNWLARPLTEKQLSYAAADVYHLLPCWNELEAKLNELGYYDYYL 178 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E ++ R+ + P+ ++ NA L RQLA LQ+L +WR A RD+AVNFVV+ Sbjct: 179 QELDNLRRRKMQKKNPKTVYKQFKNASFLSPRQLATLQVLGEWRENNAVNRDMAVNFVVK 238 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E H+ VA+ P SL +L+ L L EI+ HGK ++ +V++ + L +D LP+P+ + D Sbjct: 239 EAHILEVAKQQPKSLRDLNKLELLPIEIKRHGKQIIEMVKQVELLSDDQLPEPLTRISDY 298 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN----NLPELISG 356 PGY+K ++I++ I V+E I AEL+ S++ IN+LLNW WKL + + P ++ Sbjct: 299 PGYKKIVQSIRNKIAVVAEDKNIPAELIGSKKIINELLNWCWKLTAEEREVGDKPIMLCN 358 Query: 357 WRGELMAEALHNLL 370 WR EL+ + L Sbjct: 359 WRAELIGNTIFESL 372 >UniRef50_A4E7K3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7K3_9ACTN Length = 377 Score = 361 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 183/367 (49%), Gaps = 8/367 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 I+T AL C+ R F AIA+DTEF+R RT++P+L L+Q+ +DPL I D S Sbjct: 2 YISTHQALLDFCQRAREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPLVIDDLS 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL ++ D S+TK HA S+D+EV L+ G LP+P+ DTQ+ AAF G + ++V+ Sbjct: 62 PLAELMADESVTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFLGERQQISYGALVQT 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 + GV+L K+ES TDW RPLT++Q EYA DV YL+ ++M G + LDE R Sbjct: 122 FCGVSLPKTESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRELGRVDWVLDELR 181 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 + +A+R + QL + LA WR +A R++ +V+ ++ L Sbjct: 182 PLADESHYRADRHEAFRKVKRINSCSRHQLGIARELAAWREDRAERRNIPRKWVMSDDTL 241 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML-NLMDMPGY 303 ++ + P + E S+ + L +++ + P D LP + + P Sbjct: 242 LALVKRNPVRVEEFRSIRGTDQLGERDVDGALMAIKRGASCPHDRLPLMVRGHRQISPEL 301 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 + +LI V+E ++ ++ASR + + L GWR EL+ Sbjct: 302 ESVTDLMYALIRLVAERSGVATSVIASRDDLADYIEH-------PEQSPLREGWRFELVG 354 Query: 364 EALHNLL 370 L +LL Sbjct: 355 SRLDDLL 361 >UniRef50_Q0BVP4 Ribonuclease D n=18 Tax=Alphaproteobacteria RepID=Q0BVP4_GRABC Length = 429 Score = 361 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 110/370 (29%), Positives = 182/370 (49%), Gaps = 11/370 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 +IT + LA+LC +R P + +DTEF+R RTY+P+L ++QL + +A+ID L D Sbjct: 47 TLITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELD 106 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +P+ +L DP++ K HA +D+E+FL FG +PQP+ DTQ+ A G G+ ++V Sbjct: 107 LAPVGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQVGYDTLV 166 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 +G +DK+ +DW RPL++ Q +YAAADV +L + L E G L +E Sbjct: 167 SSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGRLAWVSEE 226 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ P W + R L L+ + WR +A+ ++ ++++E Sbjct: 227 MAVLNDPATYRTDPVTMWERLRPRTN-NRRYLGLLRAICAWREVEAQRLNIPRQRLIKDE 285 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEI--RFHGKTLLALVEKAQTLPEDALPQ-PMLNLMD 299 L +A P L G G TLLA + +A+ LP+ LP P Sbjct: 286 SLLEIAATSPADAESLAQARGVGRGFAEGRSGATLLAAIAEARGLPDADLPAIPRSRESG 345 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 +K L+ SE H ++ +LLAS +++L + + ++P L +GWR Sbjct: 346 ARPSPALVSLLKVLLAAKSEQHNVAPKLLASSEDLDRLAT-----EAEPDVPAL-TGWRR 399 Query: 360 ELMAEALHNL 369 ++ + L Sbjct: 400 DVFGQDALAL 409 >UniRef50_B9ZRL3 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZRL3_9GAMM Length = 392 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 184/369 (49%), Gaps = 8/369 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ +I T +AL + +++ IALDTEF+R +TYYPQL L+Q + LA IDPL + Sbjct: 3 DHGLIETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPLRL- 61 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L + RDP ITK HA S+D+E+ G +P P+ DTQI A+ G G+A++ Sbjct: 62 DIQQLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASMLGYGEQVGYANL 121 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V+ LDKS++RTDW RPL+ Q YAA DV +L + +L+ E + + Sbjct: 122 VKTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELDTHDRMHWLRP 181 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 E + PE +W+ ++ +L+ ++ L+ +A WR R A+ + +V+ + Sbjct: 182 EMEALSNPALYEPDPEQSWQRVSGVKRLKPKERGVLKCVAAWRERTAQSSNRPRRWVLSD 241 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L +AR P L L G H ++LLA + + Q LP + PQ Sbjct: 242 DLLLDIARRTPADAQGLRELRQFPGGMKPEHTESLLAAIREGQALPREQWPQLPEKPRLD 301 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +L+ + + H+ISA +A R+ + +LL K L SGWR E Sbjct: 302 ERDEVLVDIGMALLRECAREHQISAAAIAQRKDVIELL------KSDGKSGRLSSGWRRE 355 Query: 361 LMAEALHNL 369 + + + + Sbjct: 356 IAGQTIQHW 364 >UniRef50_D2LDG9 Ribonuclease D n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDG9_RHOVA Length = 404 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 108/365 (29%), Positives = 178/365 (48%), Gaps = 7/365 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +IT+ L +LC+A+ P + +DTEF+R TY P+L LIQ+ A++DPL D S Sbjct: 28 VITSITDLKTLCDALAGQPYVTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPLPNLDLS 87 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 P A++ + ++ K HA +D+E+ G +P PL DTQI A G + + ++V++ Sbjct: 88 PFYALMANTAVVKVFHAARQDIEIVWQEAGVIPMPLFDTQIAAMALGHGDAISYGALVKK 147 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 DK+ DW RPL +Q EYA DV YL + AKL E +G P +E Sbjct: 148 LLKKNHDKTYQAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQTGREPWLEEEVA 207 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 ++ + P DAW+ + + RT + + + LA WR R A++ ++ V+++E + Sbjct: 208 VLTDPKTYAFDPADAWKRLKLGGKSRTAR-SIIMELAAWRERAAQDENVPRGRVLKDEAI 266 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 + VA++ P +L L L +R G +L VE A + ++ G Sbjct: 267 YEVAKHAPRTLETLSRLRSVRDSVRSRGDAILRAVEAALGRDPGDVVNAAAHVDLSAGAS 326 Query: 305 KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE 364 + ++ L+ VS I+ +LLAS + +L + ++P L GWR L + Sbjct: 327 ATVELLRVLLKAVSAELDIAPKLLASAEDLEKLAQY-----DDPDVPAL-KGWRRPLFGD 380 Query: 365 ALHNL 369 L Sbjct: 381 KALAL 385 >UniRef50_D0CQ07 Ribonuclease D n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CQ07_9RHOB Length = 424 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 108/369 (29%), Positives = 175/369 (47%), Gaps = 15/369 (4%) Query: 8 TDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHL----ALIDPLGIT-D 62 T LA C FP + +DTEF+R RTYY +L LIQ+ L+DPL Sbjct: 45 TTQELADFCRLAANFPYVTVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDPLADGLS 104 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL + ++ + K HA +DLE+F G P+PL DTQ+ A CG G+ ++V Sbjct: 105 LDPLYELFQNEDVVKVFHAARQDLEIFWVEAGIFPKPLFDTQVAAMVCGFGEQVGYETLV 164 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + LDK+ TDW RPL++ Q YA ADV +L I L E E +G +E Sbjct: 165 RKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEKTGRSRWVAEE 224 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 R++ + PE+AWR + + LA ++ LA +R A+E ++ N V +++ Sbjct: 225 LRVLTNPETYDIRPEEAWRRVKTRTN-SGKFLAVVRELAKFREGYAQENNIPRNRVFKDD 283 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A P + +L L E R +L V++ P D LP+ + + Sbjct: 284 ALIELASTKPRTHADLGGSRLLLREARKGPIADGILEAVKRGVNCPPDELPKVDNSRDKL 343 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 ++ L+ +E+ ++A+L+AS +++++ + ++P +SGWR E Sbjct: 344 KVNPALADLLRVLLKSKTESAGVAAKLIASSAELDRIAA------GERDVPA-MSGWRYE 396 Query: 361 LMAEALHNL 369 + E L Sbjct: 397 VFGEDALKL 405 >UniRef50_Q2RSM2 Ribonuclease D n=10 Tax=Alphaproteobacteria RepID=Q2RSM2_RHORT Length = 386 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 177/368 (48%), Gaps = 10/368 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW 63 +I+T LA C + + +DTEF+R +TY+P+L LIQL +DPL D Sbjct: 3 LISTTKDLADFCARLSTESFVTVDTEFMREKTYWPKLCLIQLAGTTEAHCVDPLAPDIDM 62 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL A++ + S+ K HA +DLE+FL+ G LP+P+ DTQ+ A CG S G+ ++V Sbjct: 63 APLFALMANESVLKVFHAARQDLEIFLHESGHLPKPIFDTQVAAMVCGFGDSVGYETLVA 122 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + +DKS TDW RPL +RQ YAA DV +L + +L A+G E Sbjct: 123 KLAKARIDKSMRFTDWARRPLNDRQLVYAAGDVTHLRVVYERLAETLAANGRTAWLDQEM 182 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 ++ V PEDAW I + R LA LQ LA WR R A+ERDL N V+R+E Sbjct: 183 AILTDPAHYRVEPEDAWMRIKARSR-SARFLALLQELAAWRERTAQERDLPRNRVMRDEG 241 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L +A P + L L + G +L V AQ +PE ALP P Sbjct: 242 LLEIAASAPTTPDALSQLRSVSKGMAEGTMGLGILEAVRLAQAIPEKALPHPPDREDLPQ 301 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 G +K L+ E ++ +L+A+ + ++ N + GWR L Sbjct: 302 GLGPVVDLLKVLLKMKCEEAGVAQKLVANMNDLERIAA------DDNADVLAMEGWRRAL 355 Query: 362 MAEALHNL 369 E L Sbjct: 356 FGEDALRL 363 >UniRef50_A4A872 Ribonuclease D n=1 Tax=Congregibacter litoralis KT71 RepID=A4A872_9GAMM Length = 370 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 6/371 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MN+ ++ DD+L ++ IA+DTEF+R +YYP + L+QL +H LIDPL I Sbjct: 1 MNWTLVENDDSLRGALASLAGADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 ++ L+A+L D + K LH+ SEDLEVF + G LP PL+DTQ A G+ G+ + Sbjct: 61 SNLDGLRALLTDSACIKVLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLGKGFGLGYRA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+E GV LDK E+R+DWL RPL+E QC YAA DV L+P L E G + L Sbjct: 121 LVKELLGVELDKGETRSDWLKRPLSESQCHYAALDVLELVPAWRILRELAEEQGRMQWVL 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DE + R +R + +A +L RQL L+ L +WR AR D ++V Sbjct: 181 DEGE--EAIRLLKDRDGQIYRRVKSASRLSRRQLEALRRLCEWREDLARAVDKPRGWIVE 238 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ ++A +P L L + + + R G +LLA VE+A L E+ALP P L Sbjct: 239 DKAFLAIAMAIPEDHDALAELDVLPASVLRKQGDSLLACVEQALQLSEEALP-PALPGPL 297 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P R KA+++ ++ ++ E+L S + ++ PE GWR Sbjct: 298 TPPQRNLLKALRTEAKSIAAGLNVAPEILISTADLELIIR--EASGEAITEPERWQGWRA 355 Query: 360 ELMAEALHNLL 370 E + + L L Sbjct: 356 EAVIQPLRASL 366 >UniRef50_B8FEX5 3'-5' exonuclease n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FEX5_DESAA Length = 388 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 4/376 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ ++ D+ALA L +++++ IA+D E Y + L+Q+ ++DPL Sbjct: 14 DFVLVDNDNALADLTQSLQSQKCIAVDLEADSMFHYQEKACLLQITSNGLNYIVDPLCDC 73 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L IL + I K H D+ FG L DTQ+ A F G P G A + Sbjct: 74 DVKALAPILENDEIQKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGEP-QTGLAPL 132 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 +E GV L+K + +W RPL YAA D +LL + L E L + Sbjct: 133 LESRFGVQLEKKYQKKNWSLRPLPPEMMAYAANDTVHLLELAEILKKELVEKDRLFWVEE 192 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 EC ++ R + A +L R L L+ + R A++ + + V+ Sbjct: 193 ECEILTHARPMPPNDGPLFLRFRGAGKLDPRSLQVLENILHVRDDLAKKWNRPLFKVLGN 252 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLM 298 + +A+ P + L SL G S + + G L+ ++ +++P++ LP Sbjct: 253 TPILEMAQKRPLNTKGLVSLHGFSPKQAKMFGHELIRAIKAGKSVPDEKLPSYPRKKRPP 312 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 P K K +K + E + + ++ + QI + + + + + + + W+ Sbjct: 313 LNPKAPKRAKVLKDWREKMGEELGVESSVVLTNAQIQAMASNKPRSIRELDECQEVRQWQ 372 Query: 359 GELMAEALHNLLQEYP 374 ++ + L LL+ P Sbjct: 373 KKVFGQTLVELLKAVP 388 >UniRef50_A6VYC1 Ribonuclease D n=2 Tax=Marinomonas RepID=A6VYC1_MARMS Length = 384 Score = 351 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 121/373 (32%), Positives = 198/373 (53%), Gaps = 2/373 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +N + +++LAS C+ P IA+DTEF+R TY+P GLIQ+ +G+ LIDPL I Sbjct: 13 LNIVWVADNESLASWCDYWADLPVIAVDTEFIRRTTYFPITGLIQISEGDKAVLIDPLSI 72 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +W PL+ ++ DPS+ K HA SEDL+VF + G LP P DTQI A+ S + Sbjct: 73 DEWEPLRNLMVDPSVMKVFHACSEDLDVFDRLLGVLPTPFYDTQIGEAYASAQWSLSYVK 132 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++ EY + + K E+R+DW+ RPLT+ Q YAA DV YL + + EA L + Sbjct: 133 LIHEYLQIEVAKDETRSDWVQRPLTDAQKRYAALDVVYLAKVYPMQIARLEAKNMLGWVM 192 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++C ++ + Q PE W I AW+L L L+LL WR +AR+ D+ +++ Sbjct: 193 EDCDSLKWQYQMNSDPEQNWDGIKTAWRLTPAGLTLLRLLFIWRDGQARKEDVPKGQILK 252 Query: 241 EEHLWSVARYMPGSLGELD-SLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + LWS+A+ +P + + L+G + R +G+ +L V L D P+ + Sbjct: 253 DRTLWSLAKTLPTHHKAVSEAEELTGRQHRLYGEVILQNVALVNELSPDEYQLPLEIPLP 312 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 KAIK+ I D +E I+ E + R+ ++ L+ + + ++GWR Sbjct: 313 S-QAGDLTKAIKAFIRDKAEMLNIAPEAMMKRKLLDPLVRHLYDGTEIDLQNPAMTGWRR 371 Query: 360 ELMAEALHNLLQE 372 +++ + + N ++ Sbjct: 372 DVIVDPILNRFKK 384 >UniRef50_C6XKM8 Ribonuclease D n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XKM8_HIRBI Length = 390 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 102/371 (27%), Positives = 176/371 (47%), Gaps = 10/371 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 +++ D L CE ++ IA+DTEF R T++P+L LIQ E LIDPL D Sbjct: 10 KLVADTDELIKACEELKKGEFIAVDTEFHRESTFWPKLCLIQAATLEFDCLIDPLSPNID 69 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +P ++ D S K HA +D+E+F + G P P+ D+Q+ A CG S + ++V Sbjct: 70 LAPFLDLMADTSRVKVFHAARQDMEIFTKLIGTPPAPIFDSQVAAMACGLGDSVSYENLV 129 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + +DKS TDW RPLTE+Q +YA DV +L KL + E G + +E Sbjct: 130 SQLLKARVDKSSQFTDWQRRPLTEKQLDYARGDVTHLRHCYVKLKAKLEKLGRMGWIEEE 189 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ P++AW+ + + R LA + +++WR + A+E D + +++++ Sbjct: 190 TEILVNPDTYDTNPKNAWKRMK-IRKPRKDYLALIASVSEWREKLAQELDKPRSRILKDD 248 Query: 243 HLWSVARYMPGSLGELDSLG--LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + +A+ P + ++ L G HG+TLL + A P+ P+ + Sbjct: 249 AVQEIAQQKPIDVNAMERLRAVPKGFAKSKHGQTLLEAINAAIADPDAYAPEIPKRPTNT 308 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +K L+ VSE ++ L+A+ I ++ + ++ + + GWR E Sbjct: 309 QPPGAVGDLLKVLLKHVSEEADVAPRLIANAADIERIA-----CDVEPDV-QAMRGWRRE 362 Query: 361 LMAEALHNLLQ 371 + L Q Sbjct: 363 VFGNLAIKLKQ 373 >UniRef50_D0WEC8 Ribonuclease D n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEC8_9ACTN Length = 399 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 105/367 (28%), Positives = 177/367 (48%), Gaps = 7/367 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 IT L R +A+DTEF+R R Y+ +L LIQL E ++DPL + D S Sbjct: 4 YITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKVHDLS 63 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL+ ++ D S+ K HA ++DL++ + +P P+ DTQ+ AA G+ + G+ ++V Sbjct: 64 PLRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALLGQTVQVGYGTLVLN 123 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 GV L K++S TDW RPL+ Q YA DV YL I +L EA G + Sbjct: 124 ECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRASWLEHDFA 183 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 + + V PE+ WR + N QL RQLAC + +A WR RKA ER++ V+ + + Sbjct: 184 ELVDPSRYRVDPENRWRHLKNVNQLSGRQLACAKHVAAWRERKAMERNIPRKAVLSDVQI 243 Query: 245 WSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 + R P S+ ++ + G++ + + +L+ +K P+D P Sbjct: 244 VEICRREPRSIDDMFMVRGVASALSTKEARDVLSACKKGLETPDDECPSLARAPRGEQNV 303 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 + +L+ + + I+ + S ++ ++ H + +L+ GWR + Sbjct: 304 DAQTALLAALVHQRARENSIAFSAITSNAELARIARGH------TDDCDLLKGWRRAIAG 357 Query: 364 EALHNLL 370 + + L+ Sbjct: 358 KDVLKLM 364 >UniRef50_C4LF08 Ribonuclease D n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LF08_TOLAT Length = 365 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 129/363 (35%), Positives = 192/363 (52%), Gaps = 1/363 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+Y I +D L L + + + LDTEF+R TY+P+LGL+QL LIDPL I Sbjct: 1 MSYSYIDSDILLQPLLAQISSASTLLLDTEFIRVSTYFPKLGLLQLHLNAVDYLIDPLAI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + L + H+ EDL+V +LP + DTQ+ AAF G S G+A Sbjct: 61 NSINLLWDAIFSDHRLFVFHSCKEDLDVLQVCAQKLPGRVFDTQVAAAFLGYGASLGYAG 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE+ VT+ K ++ TDWLARPLT Q YAA DV YL + L E +G Sbjct: 121 LVEKVCDVTVAKDQTLTDWLARPLTAAQKLYAAKDVSYLQYLYDHLSQELNTTGKTEWFN 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E + +Q+ V P++ +R+I+ AWQL +LA L+ LA WR + A D NF+VR Sbjct: 181 EEMTALLEAKQQAVIPDELFREISGAWQLYPSELAVLRELAKWRYQTAISEDKPQNFIVR 240 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EE L ++R P + EL +S + + +L ++K P + P + +MD Sbjct: 241 EEVLADLSRKRPQTERELAQTDISYQQKNRYADAILQCIQKGMECPVELHPARIKRIMDF 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN-NLPELISGWRG 359 P Y+ FK IK + ++ + + ELL SR+ INQ L W ++ K + P++ SGWR Sbjct: 301 PHYKHDFKQIKQRVEIAAQDNNLPVELLGSRKLINQYLLWTYEGKSSDVEQPKITSGWRN 360 Query: 360 ELM 362 +L+ Sbjct: 361 KLL 363 >UniRef50_Q1N1A2 Ribonuclease D n=1 Tax=Bermanella marisrubri RepID=Q1N1A2_9GAMM Length = 382 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 112/381 (29%), Positives = 190/381 (49%), Gaps = 17/381 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + I T LAS CE IALD+EF+R T+YP+L LIQ+ DG L+DP+ I Sbjct: 2 KYIDTHIDLASACEHWNTCNRIALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRINRA 61 Query: 63 ---------WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP 113 W PL +L + ++ K LH+ SED + F + G +P P+IDTQ AA Sbjct: 62 HRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMASID 121 Query: 114 MSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS 173 G+ +V++ + L+K +R+DWL RPLT+ Q YAA DV +LL IT +L + Sbjct: 122 GIMGYQKLVKQLLDIDLEKGATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQLVTQ 181 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDAW--RDITNAWQLRTRQLACLQLLADWRLRKARER 231 G L++C M ++ E + I AW L+ +QL L+ L WR R+ R Sbjct: 182 GRWTWLLEDCERMV--EDWLIGQEQGYGIERIKKAWMLKPKQLFTLEKLLAWRERRCRTV 239 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDAL 290 + ++ + L +A +P S +L S+ G+ +R G+ ++ ++++ + Sbjct: 240 NKPRGHILNDSLLVDLAMRLPTSTKQLSSIKGIRQPTVRKDGEQIVDIIQRCKESESSQW 299 Query: 291 PQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNL 350 P+ + + + FK ++ L+ ++ + E++A ++ + +L + P + Sbjct: 300 PERLPRPFNQVA-GEWFKDMRDLVQKKAKELDVPPEMVARKKSLEGMLRKAYPNGPI-EI 357 Query: 351 PELISGWRGELMAEALHNLLQ 371 P + GWR E++A L L+ Sbjct: 358 PRSLQGWREEVIATPLVEKLK 378 >UniRef50_Q2BKH7 Ribonuclease D n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKH7_9GAMM Length = 397 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 193/371 (52%), Gaps = 4/371 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 IT+ + L+ CE R P IALDTEF R T+YP GLIQ+ D + LIDPL I+D+ Sbjct: 20 IWITSAEQLSECCEKWRNLPLIALDTEFQRVDTFYPLPGLIQVADDQACYLIDPLEISDF 79 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 S L + +D + K +HA +EDLE+F G LP PL DTQI AA S G M+E Sbjct: 80 SSLSTLFKDEGVVKVMHAATEDLELFHKEIGALPVPLFDTQIAAALINWGFSMGLQRMLE 139 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 V L+K E+ ++WL RPLT Q +YAA DV YL I E + G EC Sbjct: 140 SCLSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLSRGHFHWVEQEC 199 Query: 184 -RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ + V + T W+L +LA L+ L WR ++AR+R++ N ++R + Sbjct: 200 SAMLADAAIDDVDGFSYYTRFTQMWRLPKHKLAALRDLTAWREQQARKRNVPRNRILRNQ 259 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 + + P L +L L + S +R G+ +L ++ + + P+P+ + Sbjct: 260 AILQIIEQWPKGLADLSRLDEIKKSILRTDGEVILGFLKGGEASADKVEPEPIPQPLHY- 318 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 + K K +K++ ++E + + E+L R+++ QL+ + + LP+ +S WR E+ Sbjct: 319 FWNKHLKKLKAIARRLAEENNTAPEMLLRRKELEQLIRSGVD-EGEYRLPQAMSAWRKEM 377 Query: 362 MAEALHNLLQE 372 + AL + LQ Sbjct: 378 LDAALMDELQR 388 >UniRef50_B8KGY1 Ribonuclease D n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KGY1_9GAMM Length = 372 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 6/371 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M + ++ +D+ALA +A+ IA+DTEF+R TYYP + L+QL +H LIDPL + Sbjct: 1 MTWTLVESDEALAEALDALSNASEIAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD L+A++ D K LH+ SEDLEVF + G +P PLIDTQ A G+ G+ + Sbjct: 61 TDLDGLRALMTDTGCWKVLHSCSEDLEVFRHWLGVVPSPLIDTQRATALLGKGFGLGYRA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E GV LDK E+R+DWL RPL++ QC YAA DV L+P L + G + L Sbjct: 121 LIELLLGVELDKGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILKDLALSQGRMEWIL 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DE + R D +R + +A +L RQL L+ L +WR AR D ++V Sbjct: 181 DEGE--EAIRLLNERDRDIYRRVKSASRLSPRQLDALRRLCEWREALARSVDKPRGWIVE 238 Query: 241 EEHLWSVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ ++A+ MP + L L + S IR G TLLA V A+ + +DALP + + Sbjct: 239 DKACIAIAQSMPADIEALTDLDVLPASVIRKQGDTLLACVRGAKDVSQDALPDALPGPLA 298 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P R K ++ ++E ++ E+L S + LL + P+ GWR Sbjct: 299 AP-QRNVLKTLRQRARQIAEELNVAPEILISTADLELLLR--EASGVEIVEPQRWQGWRA 355 Query: 360 ELMAEALHNLL 370 + L L Sbjct: 356 TAVIAPLRASL 366 >UniRef50_C7MN49 Ribonuclease D n=3 Tax=Coriobacteriaceae RepID=C7MN49_CRYCD Length = 399 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 105/371 (28%), Positives = 175/371 (47%), Gaps = 9/371 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 + IT L + + +A+DTEF+R +TYY +L L+Q+ + ++DP ++ Sbjct: 17 HSVFITDQAELEAFAKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAVS 76 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L + + SI K +H+G +DLE+ G LPQPL DTQ+ AA G G+ S+ Sbjct: 77 DLGVLAPLFQSSSIMKIVHSGRQDLEILNREVGLLPQPLFDTQVAAALLGHTQQIGYGSL 136 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V GV L K +S TDW RPL+ Q YAA DV YL + + E E G + Sbjct: 137 VSAVCGVQLAKMDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERLGRIHWLDP 196 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + V P D +R + QL RQL+ + +A WR ++AR+RD+ +V+ + Sbjct: 197 DFAALIDPALYVDDPRDRYRRLKRVGQLSRRQLSAAREVAAWREKRARDRDIPRKWVMTD 256 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ-PMLNLMD 299 E + + ++ L + GLS +T++ + + L D P+ + Sbjct: 257 EQVVEACKREARTIDSLFMVRGLSDRLSTGDARTVVRCICRGLDLEPDKWPKSDHVAYGG 316 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 A+ +L+ + + I+ + LAS + ++ + H E++ GWR Sbjct: 317 DVNVDAVLDAMTALVRLRARQNNIAFQTLASHSDLVKVAHGHKDA-------EILRGWRR 369 Query: 360 ELMAEALHNLL 370 E++ L LL Sbjct: 370 EIVGAELLELL 380 >UniRef50_A5G9G2 3'-5' exonuclease n=8 Tax=Desulfuromonadales RepID=A5G9G2_GEOUR Length = 409 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 4/371 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I AL L E + +A D E Y ++ LIQ+ ALIDPL D S Sbjct: 38 IIEDQQALNRLVERLNTETTLAFDLEADSLHHYTEKVCLIQVSTNSETALIDPLAPLDLS 97 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL IL +P++ K H D+ FG + L DT I + F G G A+ +++ Sbjct: 98 PLAPILANPAVRKVFHGADYDMRSLYRDFGFEVRNLFDTMIASQFLG-EKEVGLAAALKK 156 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 GV LDK + DW RP + + EYA D L+ + +L E A G L +E Sbjct: 157 RFGVELDKKYQKADWSKRPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGRLAWVEEESE 216 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 ++ R E + A +L+ R LA L+ L +R +AR+RD+ ++ E L Sbjct: 217 IVSCVRAASRDNEPLFLRFKGAAKLKPRSLAVLEKLLLFRDERARKRDVPPFRILGNEPL 276 Query: 245 WSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ--PMLNLMDMP 301 +A +P + +L + G+S I +G+ +L +V + ++P + LP + ++ Sbjct: 277 RELAELLPRTAADLTGIPGISQKLIDTYGREILNVVAQGLSIPAEKLPHYPTVQRVIKDR 336 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 + K +K +S ++A+ + L + + W+ + Sbjct: 337 YQEERLKRLKEWREGKGAALGLSVGIIANNSLLEALSEAAPDSLEKLAGIPGLKRWQKQE 396 Query: 362 MAEALHNLLQE 372 L +LL+ Sbjct: 397 FGAELLDLLKN 407 >UniRef50_A1SVE6 Ribonuclease D n=3 Tax=Psychromonas RepID=A1SVE6_PSYIN Length = 369 Score = 347 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 213/372 (57%), Gaps = 7/372 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M +++ITT L + P I+LDTEFVRTRTY LGL+Q+ + LIDP+ + Sbjct: 1 MQFEIITTTAQLHDFIATLDGSP-ISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAV 59 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S + + +I LHA SEDLE+ + G+L L DTQI +F S G+A Sbjct: 60 GDLSSFWQAIDNKNI--ILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAK 117 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MVE V +DK ESRTDW ARPL+E+Q YA DV YL P KL + E P Sbjct: 118 MVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFE 177 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 EC+ + ++ P+ A++ + N ++L + LA ++ LA WRL A+ER+LA+NFVV+ Sbjct: 178 QECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVK 237 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 +HLW +A Y P SL +L L L +EIR HG+ +L ++ + + E P + L+D Sbjct: 238 ADHLWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDF 297 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL----KPQNNLPELISG 356 P Y+ K+++ I +E + + ELLAS+R IN+ L+W WKL + N P+L++G Sbjct: 298 PAYKSTVKSMRDKIQLCAEKYDLPLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTG 357 Query: 357 WRGELMAEALHN 368 WR EL+ + Sbjct: 358 WRFELIGHQFEH 369 >UniRef50_A7HYE5 Ribonuclease D n=116 Tax=Alphaproteobacteria RepID=A7HYE5_PARL1 Length = 427 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 111/369 (30%), Positives = 190/369 (51%), Gaps = 10/369 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 ++ITT++AL + C+ + + +DTEF+R T++P L LIQL ++DPL D Sbjct: 45 EIITTNEALRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLD 104 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +P A++++ ++ K HA +D+E+F + +P PL DTQ+ A CG S G+ ++V Sbjct: 105 LAPFYALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGFGDSVGYETLV 164 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + +G ++DKS TDW RPL+++Q +YA ADV YL I L + +E Sbjct: 165 RKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHTKRAHWVAEE 224 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++Q + PE+AW+ + ++ R LA L +A WR R+A+ERDL + V++++ Sbjct: 225 MAVLQDPETYAMRPENAWKRVKARFR-GQRGLAVLVEVAAWRERQAQERDLPRSRVMKDD 283 Query: 243 HLWSVARYMPGSLGELDSLG--LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A +P ++ +LD L G +L+ VE+ + E+ +P Sbjct: 284 ALAEIATQIPRTISDLDGLRAVPKGFSNSRSAASLMEAVERGLAMKEEDIPVVEGPEPLP 343 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PG + +K L+ E H ++ +L+A+ + L+ H + + GWR E Sbjct: 344 PGIGPLVELLKVLLKIKCEEHDVAQKLVANVADLE-LIAAHSEADVG-----ALKGWRRE 397 Query: 361 LMAEALHNL 369 L E L Sbjct: 398 LFGEDALRL 406 >UniRef50_B7RU98 Ribonuclease D n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RU98_9GAMM Length = 373 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 197/377 (52%), Gaps = 14/377 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-----DGEHLALI 55 M++Q++ +D ALA L A A+ +DTEF+R T+YPQ+ L+QL +I Sbjct: 1 MDWQLVESDAALAELMNAAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTAWMI 60 Query: 56 DPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 DPL I D +PL + +D + K LH+ SEDLEVF G LP PL DTQ AA G Sbjct: 61 DPLKIEDPAPLANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALVGLDFG 120 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW 175 G+ SMV E L K E+R+DWL RPLTE QC YAA DV +LL + + Sbjct: 121 LGYRSMVLELCNEDLPKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERCHSMQR 180 Query: 176 LPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAV 235 L++ + + + +R I AW+L R+LA L +++WR R ARE+D Sbjct: 181 YDWVLEDGEEACRGLASMSSAQ-YYRRIKGAWKLEPRELAALIAISEWRERTAREKDKPR 239 Query: 236 NFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPM 294 ++++ ++ +A+ P ++ +L S + + GS +R +G+TLL LV + +PE LP + Sbjct: 240 SWIIDDKACLQLAQVGPANMNDLRSKIEMHGSSMRRYGETLLDLVAEQSAVPEAELPATL 299 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 ++ RK K +K + ++ ++ ++L + + L+ + P Sbjct: 300 PAPLNS-VQRKQMKKLKQITEKIALDLGVAPQVLVASKDYEVLI------RKDPEQPAAW 352 Query: 355 SGWRGELMAEALHNLLQ 371 +GWR + E L +LL+ Sbjct: 353 AGWRRLKIIEPLRSLLE 369 >UniRef50_A9A075 3'-5' exonuclease n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A075_DESOH Length = 382 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 155/373 (41%), Gaps = 4/373 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + T LA + + P +A+D E + ++ LIQ+ LIDPL ++D Sbjct: 9 FTFVNTPSGLAQVVHRLERVPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLALSD 68 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S LK DP + K LH D+ FG L D++I + F G S G +V Sbjct: 69 LSSLKPFFADPGVIKVLHGADYDVRSLYRDFGITITGLFDSEIASRFLGV-QSTGLNDVV 127 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 GVT+DK + DW RPL E+ YAA DV YL+ + +L E + G +E Sbjct: 128 NRRFGVTMDKGCRKQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAEE 187 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 C L+ R + A +L R LA L+ L R + AR++D V+ + Sbjct: 188 CELLSRVRYANGEDTPLFVRFKGAGRLSRRTLAVLEALLVARQKMARKKDRPPFKVMGND 247 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALP-QPMLNLMDM 300 L +A+ P + L+++G S ++ +LA VE+A LP+ LP P + Sbjct: 248 ALLRLAQERPRNRKALEAMGVFSKKQLPMVADGVLAAVERAMVLPDSQLPVYPRTRQPAL 307 Query: 301 PGYRK-AFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P + +K + + LL + + + K E + W+ Sbjct: 308 PRAAARRVEILKQWREKAATRLCLDPGLLFPKSLVTAVAQEGPKTLADLGRVEGVRRWQV 367 Query: 360 ELMAEALHNLLQE 372 E + + L Sbjct: 368 EALGPEMLEALGS 380 >UniRef50_B3Q9Q3 Ribonuclease D n=5 Tax=Bradyrhizobiaceae RepID=B3Q9Q3_RHOPT Length = 392 Score = 344 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 178/368 (48%), Gaps = 11/368 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW 63 +I+T + LA C + P I +DTEF+R T+YP L ++Q+ E +ID L D Sbjct: 3 LISTSEQLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGIDL 62 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 P ++ + + K HA +D+E+ + G +P P+ DTQ+ A G S + +VE Sbjct: 63 KPFFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYGDSIAYDQLVE 122 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 +G DK+ TDW RPLT+ Q YA +DV +L + A L + + G +E Sbjct: 123 RITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEM 182 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 ++ V PE AW + + + ++LA L +A WR ++A+ RD+ + V++++ Sbjct: 183 EVLTSPSTYDVHPERAWERLKTRVR-KPKELAVLMEIAAWREQEAQSRDVPRSRVLKDDA 241 Query: 244 LWSVARYMPGSLGELDSLG--LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L +A + P SL +L +L G + G ++A V++ LP+ + Sbjct: 242 LGDIATHAPTSLEKLANLRSLPKGFDRSKWGTEIVAAVQRGLARDMATLPKIDKPRNNSN 301 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 G + +K L+ SE H ++A+++A+ + Q+ N + GWR EL Sbjct: 302 GT-AIVELLKVLLRMTSERHAVAAKVIATVDDLEQIAA------DDNADVGALRGWRREL 354 Query: 362 MAEALHNL 369 EA L Sbjct: 355 FGEAALAL 362 >UniRef50_C1ZCS8 Ribonuclease D n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCS8_PLALI Length = 423 Score = 343 bits (880), Expect = 7e-93, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 174/374 (46%), Gaps = 4/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M ++T + C+++R + DTEF+ T+ P+L L+QL + L+DP + Sbjct: 1 MTESLMTQQHEFEAFCKSIRQAGIVGFDTEFISEFTWRPELCLLQLATPDRAVLVDPFEV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +P I+ DP + H G E+ + G+ P D QI F GR G+ + Sbjct: 61 RDLAPWWEIMLDPDVVVVAHGGREEARFCVTNTGQAPVNFKDVQIAEGFRGRSFPLGYDA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ G E+R+DW RPLT+ Q YA DV ++LPI AK + + L Sbjct: 121 LVKRVLGHKSHGKETRSDWRRRPLTKSQVHYALEDVQHILPIWAKQSADLKKKNRLAWVE 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DE + R + ++AW + +L +R+LA + + WR +A RD ++R Sbjct: 181 DEFTRLV-RDVVLERADEAWLKLPGLHKLNSRELAVAKNVFWWREHEAEARDKPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ L +AR P ++ EL + ++ +E R +LA ++ A LPED LP D Sbjct: 240 DDLLIELARRQPANIDELVATRDMNRTEYRKAAAEILAAIDTALALPEDQLPSRPPEPED 299 Query: 300 MPGYRKAF--KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + + + + + + ++ ++ + L+ WH ++ P L+ GW Sbjct: 300 DQSHDEQLLGQLLGIALANRCAEMNVAMSIVGKTADLRHLVRWHVFGDKRHGTPRLMQGW 359 Query: 358 RGELMAEALHNLLQ 371 R E+ + L N+L Sbjct: 360 RAEVCGDLLSNVLD 373 >UniRef50_C3ZLP6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZLP6_BRAFL Length = 832 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 11/293 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 ++TT + L + + + A+D E R++ L+Q+ +H ++D L + D Sbjct: 274 TLVTTLEELMDMNDKLTMCSEFAVDLEHHSYRSFQGFTCLMQVSTRDHDYIVDTLALRAD 333 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L DP + K H D++ FG + DT + G P A ++ Sbjct: 334 LHVLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMFDTGQASHVLGLP-RHSLAYLL 392 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGWLP 177 + Y V DK DW RPL +YA D YLL I + E + L Sbjct: 393 KTYCDVEPDKKYQLADWRIRPLPSEMTQYAREDTHYLLHIYDCMRSELLDRGNNEANLLH 452 Query: 178 AALDECRLMQMRRQEVVAP-EDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLA 234 L+ R + ++R + + ED++ ++ N + ++QL ++L+ WR AR+ D + Sbjct: 453 NTLERSRQVCLQRYQKLLYTEDSYLNLLNKHKKTFNSQQLHAVRLVYRWRDTIARQEDES 512 Query: 235 VNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 +V+ L +A +P + +R H + + L+ +A+ +P Sbjct: 513 TGYVLPNHMLLVLAETLPKQIQGVFACCNPVPPLVRQHIEDVHRLLVQARDVP 565 >UniRef50_A3ZQI0 Ribonuclease D n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQI0_9PLAN Length = 392 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 168/372 (45%), Gaps = 4/372 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MNY+ + + L LC+ +R+ I DTEFV Y P L L+Q+ GE LA++DP I Sbjct: 1 MNYEYVESQSQLTELCDRLRSESHIYFDTEFVSEDVYLPDLCLVQIAAGEILAIVDPKRI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D + ++ +H+G E+ G+ P L DTQI G F + Sbjct: 61 DDMNVFWELIAGGDHVSVVHSGREEFLFCYRATGKAPANLFDTQIAGGLIGMEYPASFGN 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++ L K E+RTDW RPL+ RQ EYA DV YL P +L E Sbjct: 121 LILRLLDEKLPKGETRTDWRVRPLSSRQIEYALNDVAYLGPAAQELEKELTKLDRTSWLQ 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E Q E WR+++ L R LA ++ L WR ++A ++ ++R Sbjct: 181 EEMTSWQEALIESTQR-ARWRNVSGTGSLSRRSLAIVRELWKWRDKRASAANIPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ + +A+ +L ++ ++ G+ S++ + + + ++ A L E+ P + Sbjct: 240 DDLIAELAKRKSSNLKQIRAIRGMQRSDLNRYFEEIADAIQIALELDENDCPSSQPSWNQ 299 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 Y + + + + + K++ L + + + L+ H P+ P L GWR Sbjct: 300 GKQYGVLGQFLAAALGSICREAKVAPSLACTVQDVRDLIAHHMDGAPE--APSLAQGWRA 357 Query: 360 ELMAEALHNLLQ 371 E++ + + +LL Sbjct: 358 EVIGKTIEDLLD 369 >UniRef50_A1UT53 Ribonuclease D n=5 Tax=Bartonella RepID=A1UT53_BARBK Length = 391 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 98/371 (26%), Positives = 166/371 (44%), Gaps = 9/371 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 ++IT L +R + +DTEF+R T++PQL LIQL ALIDP+ D Sbjct: 2 ELITKTKDLEIAIATLRNSDFVTVDTEFIRETTFWPQLCLIQLASPNSTALIDPMVPDID 61 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P ++ D +I K HA +D+E+ ++ +P PL DTQI A CG S + +V Sbjct: 62 LQPFFDLMIDKNIVKVFHAARQDIEIIYHLGRIIPFPLFDTQIAGAICGFGDSISYDQIV 121 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 +G LDKS TDW RPL+E+Q YA ADV YL + L + E S E Sbjct: 122 YHCTGQHLDKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKRFHWMDGE 181 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ + ++AW+ + + + + A LQ +A WR +AR+ ++ ++++E Sbjct: 182 MAILSTPTTYDIPEDEAWKKVKGRVK-KPCEFAILQKIAAWREHEARKYNVPRRHIIKDE 240 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHG--KTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A P L L + L+ +V ++ + LP Sbjct: 241 CLIEIAIQKPKDEYALKCLRNINKSWHHPSMTQALIKIVHESLEVDTSTLPALPKYNPID 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 A +K L+ V+ + I+ ++A+ + ++ ++GWR E Sbjct: 301 DKTAAAIDLLKVLLKLVANKNNIAPTIIATSNDLEKIATRTMTQNIPT-----MNGWRYE 355 Query: 361 LMAEALHNLLQ 371 + + +L+ Sbjct: 356 IFGKKAEQMLK 366 >UniRef50_Q1QXJ4 Ribonuclease D n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXJ4_CHRSD Length = 375 Score = 336 bits (863), Expect = 7e-91, Method: Composition-based stats. Identities = 123/375 (32%), Positives = 194/375 (51%), Gaps = 8/375 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLGI 60 + + T AL C+A+ +A+DTEF R T++P L+QL+ G + + ++DP + Sbjct: 6 EIRWVATPGALDDACDALAGAEWLAVDTEFHRESTFFPIAALVQLYAGGDAVYMVDPRAV 65 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + L+A+L K LHA EDLEV + P+ DTQ+ + G S G+ Sbjct: 66 SASPALQALLSVSGPLKLLHASGEDLEVLESWAEVGVAPIADTQVAQSLLGTQASLGYQR 125 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++G L K E+R+DWL RPL++ Q +YAA DV YL I G L Sbjct: 126 LVEHWTGDVLPKEETRSDWLQRPLSDAQLQYAALDVVYLPRIWEAQRDALMREGRLAWLE 185 Query: 181 DECRLMQMR-RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +EC + R++V A E +R W+L RQLA Q L WR + R RD+ ++ Sbjct: 186 EECARLCDANRRDVNADEHWYRRHRQLWRLEPRQLALYQSLTRWREGEVRRRDVPRGWLA 245 Query: 240 REEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 ++ L+++A MP + +L ++ G+ + I+ G LL +V+ A L EDALP+ L Sbjct: 246 SDKVLFAIAMAMPRNRHQLAAVEGVRPTLIKHDGDALLEMVQAAAHLAEDALPR-ALPAP 304 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 P ++ KA+KS++ +E I+ E+LA+RR + L+ P L GWR Sbjct: 305 QSPAFKSRLKALKSVVNREAERLDIAPEVLANRRDLEALVMADLDGVPL----SLPQGWR 360 Query: 359 GELMAEALHNLLQEY 373 G L+ +A L ++ Sbjct: 361 GTLLGDAFTQALADH 375 >UniRef50_Q3A7R1 RNase D n=2 Tax=Desulfuromonadales RepID=Q3A7R1_PELCD Length = 375 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 154/372 (41%), Gaps = 6/372 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++ +A L + +R IA+D E +Y ++ L+Q+ L+DPL + D Sbjct: 6 ILVDDVS-IARLAQELRDEAVIAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLAVEDL 64 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + L +L DP+I K HA D+ F Q L DT I G G A ++ Sbjct: 65 AALAPVLADPTIRKIFHAADYDIRCLFRDFRIEVQGLFDTMIACQMLG-EKRVGLADVLA 123 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 +Y V LDK R DW RPL E YA D +L +T L G L A +E Sbjct: 124 KYLDVELDKRYQRADWSKRPLEEGMILYAMEDTCHLHRLTEILEGRLRDMGRLSWAEEEF 183 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 L+Q R + + A L +QLA L+ L WR +A RD VV + Sbjct: 184 ALLQKVRHSENNGP-LFMRVKGAGLLERKQLAVLEQLLQWRDEEACRRDRPAFKVVGNKT 242 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLMDM 300 L +A+ MPGSL E + G S +G+ L+ +V KA +P + P Sbjct: 243 LLGLAQIMPGSLREAKGIEGFSPRLADRYGRALIGVVCKAAAIPREEWPVYPRGERRERD 302 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P K +K + ++E + +L + Q+ + Q ++ W+ E Sbjct: 303 PAVEGRMKDLKQVRAAMAEELDMDPGILVNNAQLEGVARACPADMDQLTELGILKNWQRE 362 Query: 361 LMAEALHNLLQE 372 ++ E L L Sbjct: 363 VLGEGLLGALNR 374 >UniRef50_UPI0000E469F8 PREDICTED: similar to exosome component 10 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E469F8 Length = 819 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 11/291 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 + ++ T L L +++ IA+D E R+Y L+Q+ EH ++D L + Sbjct: 264 FTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRS 323 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L DP I K H + D++ G + DT + G P AS+ Sbjct: 324 ELQMLNDAFTDPKIVKVFHGANMDIDWLQRDLGLYVVNMFDTHQASRSLGFPH-HSLASL 382 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGWL 176 + Y V DK DW RPL E YA D YLL I + E + L Sbjct: 383 LSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRGNDRRNLL 442 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDI---TNAWQLRTRQLACLQLLADWRLRKARERDL 233 A LD+ + ++R + N +Q+ + L WR AR+ D Sbjct: 443 RAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNKKQMHAFKKLFAWRDSLARQEDE 502 Query: 234 AVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQ 283 + +++ L+ +A +P G L ++ + + + +A+ Sbjct: 503 STGYILPMHMLFQIAEILPKDQGGILACCNPVPPLVKQNINEIYHFILEAR 553 >UniRef50_Q7URG3 Ribonuclease D n=1 Tax=Rhodopirellula baltica RepID=Q7URG3_RHOBA Length = 493 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 102/377 (27%), Positives = 177/377 (46%), Gaps = 8/377 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NY I T A CEA+ P I DTEFV Y P+L L+Q+ G+HLA+IDP + Sbjct: 90 VNYDSIETPSQFAEFCEAIADEPVIGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTV 149 Query: 61 TDWSPLKAILRDPSI-----TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 D P IL D I HA E++ G L DTQ+ A F G Sbjct: 150 GDTKPFWDILTDDQIEPGSRVVIAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFVGIEYP 209 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW 175 A++V++ G TL K E+RT+W RPLT+ Q YA DV L + +KL+ + +A Sbjct: 210 ASLATLVQKLVGQTLPKGETRTNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDR 269 Query: 176 LPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAV 235 + +E +Q + + E+ W+ ++ + L+ RQL ++ L WR AR ++ Sbjct: 270 VSWLDEETDRLQKKVIDAEESEN-WQRVSGSSGLKPRQLEIIRHLWRWREEIARTKNRLP 328 Query: 236 NFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPM 294 V+R++ + +A+ ++ ++ G+ + A + A +P++ LP+ Sbjct: 329 RRVMRDDLMVELAKKGSPDTKKIRNIRGMERRGYNDQYDEIGAAIAAALDVPDEHLPR-R 387 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 + + + I +S K++ ++ + + +LL++ + P L+ Sbjct: 388 TRGRSRSASPMLSQFLSTSIACISRQQKLAPAIVGNSDDVKELLSYELDPRRGTPTPSLL 447 Query: 355 SGWRGELMAEALHNLLQ 371 GWRG+++ A +L+ Sbjct: 448 KGWRGDIVGTAFRKILR 464 >UniRef50_Q31F99 Ribonuclease D n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F99_THICR Length = 385 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 108/375 (28%), Positives = 187/375 (49%), Gaps = 14/375 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLG 59 M+Y++I L + CE ++ P IALDTEFVRT TY+ L LIQ+ A+IDPL Sbjct: 1 MDYKIINQQADLDAFCELLKTCPWIALDTEFVRTDTYFSILSLIQIQTHDGQAAIIDPLA 60 Query: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 I D + L +I+ +P++ K H+ +D+EV V G++P + DTQI F G A Sbjct: 61 IEDLTALWSIISNPNVRKVFHSARQDIEVLYQVSGQMPISIYDTQIACLFLQHGDLAGLA 120 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +V+ TL+K ++RT+W RPLT++Q EYA DV YL P+ KL E A Sbjct: 121 RVVKAELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLYEKLQAELTEQQQ-AAL 179 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 ++ + + + + A + I A +L + A LA+WR + A E + +V+ Sbjct: 180 EEDFQALLNEDLYKIDIKAAGKKIKAAKKLSRKNKAIAYKLAEWREQFAIENNKPKRWVM 239 Query: 240 REEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 +E L ++A+ P + L + + S ++ +G + L++ P+D P+P + M Sbjct: 240 SDEVLVAIAKRPPKTPEALYKVPHIKASSVKNYGAEWIELIDDVFESPDD-WPKPTASSM 298 Query: 299 DMPGYRKAFKAIK-SLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + +I +LI ++ + ++ +A++ + +++ ++ GW Sbjct: 299 PATPQDEVLISIGFALIQQITIDYNVNPNNVANKSDLLKMIQSDSF---------MLRGW 349 Query: 358 RGELMAEALHNLLQE 372 RG L+ + LQ Sbjct: 350 RGLLLGQPFTQFLQN 364 >UniRef50_C4Q1K8 Polymyositis/scleroderma autoantigen-related n=1 Tax=Schistosoma mansoni RepID=C4Q1K8_SCHMA Length = 830 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 81/318 (25%), Positives = 132/318 (41%), Gaps = 11/318 (3%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +YQ + T D L + +++ IA+D E R++ LIQ+ +ID L + Sbjct: 213 SYQYVDTLDTLEQIMKSLSMCKYIAVDLEHHSYRSFLGITCLIQMSTLGSDYIIDALALR 272 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L + DP I K H DL FG L DT I A + + Sbjct: 273 DHLSILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTGIAARLLQYG-RFSLSY 331 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +++ + G+ +K DW RPL EYA +D YLL I +++ E + L A+ Sbjct: 332 LLQRFVGIYANKKYQLADWRIRPLPNELIEYARSDTHYLLHIASRMCRELQDRDLLSVAI 391 Query: 181 DECRLMQMR-RQEVVAPEDAWRDI---TNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 + R + +R + V + D+ T + RQL L+ L R AR D +++ Sbjct: 392 ERARQLCLRCYTKPVFNRLGYLDLYRQTGSSSFSHRQLYALENLYALRDSIARREDESLH 451 Query: 237 FVVREEHLWSVARYMPG-SLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP---- 291 +V+ L +A +P S G +R + L ++ A+ LP LP Sbjct: 452 YVLPNHMLKVIAEVLPRESSGIFACCNPIPPLVRKYVHDLHKIIVDARNLPITDLPLTSE 511 Query: 292 QPMLNLMDMPGYRKAFKA 309 +P L+ ++ K Sbjct: 512 EPRLSTQPNSQQQENDKR 529 >UniRef50_Q6C721 YALI0E04444p n=1 Tax=Yarrowia lipolytica RepID=Q6C721_YARLI Length = 738 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 13/295 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y + T++ L + + ++ IA+D E RTYY L+Q+ E +ID + + Sbjct: 220 EYIYVDTEEKLRDMVDHLKTQEEIAIDVEHHSMRTYYGITCLVQVSSREQDYIIDTIALR 279 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + +L DP I K LH + D++ FG L DT A G A + Sbjct: 280 NLEIFNEVLTDPKIVKVLHGATMDIQWLQRDFGLYIVSLFDTFHAAQALGL-KGHSLAFL 338 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++ Y+ K +DW RP++ Q YA AD +LL I +L + L+ Sbjct: 339 LQHYANFVTSKKYQLSDWRIRPMSPEQLLYARADTHFLLNIYDQLKNALVQKDKIEGVLE 398 Query: 182 ECRLMQMRRQEVVAPEDAWR-----------DITNAWQLRTRQLACLQLLADWRLRKARE 230 + R +R E + + + + + + ++ + L WR AR+ Sbjct: 399 KSRQTASQRYEYTGYDPRYYLKSFDYEGGINRLISQFHITGPSVSVAKALFLWRDSMARK 458 Query: 231 RDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALVEKAQT 284 D + +V+ L S+A MP + + S+ S +R + + +L +++ ++ Sbjct: 459 EDESTGYVMPNYLLVSLANRMPQTPEAVFSVSKSLPLLVRKNVEEILDVIKDSKD 513 >UniRef50_B3E3R4 3'-5' exonuclease n=1 Tax=Geobacter lovleyi SZ RepID=B3E3R4_GEOLS Length = 381 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 101/377 (26%), Positives = 170/377 (45%), Gaps = 3/377 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Y +I + L LC + +ALD E Y ++ L+QL + L+DPL + Sbjct: 4 LRYTVIEHNHQLEQLCAELTDETELALDLEADSMHHYREKVCLLQLSNRAGTWLVDPLRL 63 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +D SPL+ +L P + LH G D+ FG + Q + DT + A F G +G A+ Sbjct: 64 SDLSPLRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMFDTMVAAQFTGATE-FGLAA 122 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++ E+ G+ LDK + DW RPLT +YAA D +LL + +L E G Sbjct: 123 LLREHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLELADRLHARLEQLGRREWVA 182 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC L+ R + + A +L+ R LA L+ L +R ++ARE D V+ Sbjct: 183 EECALLVGNRVAEKGNGPLFLNCKGAGKLKPRNLAILEALLQFRDQQAREADRPAFKVIP 242 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ-PMLNLM 298 E L +A +P ++ +++ + GL+ + +G+ LL +V + + E LP+ P Sbjct: 243 AEALLKIAELVPAAVRDMNGIAGLTPRLLGRYGEQLLTVVRQGLAVAEADLPRFPRGRGE 302 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 PG + +K +S +++ LLA + ++ Q I W+ Sbjct: 303 PNPGIKARITRLKQWREGISSRMGLASGLLAPNWLLERIAEQQPVTLEQLQAIPGIRRWQ 362 Query: 359 GELMAEALHNLLQEYPQ 375 L + L + Q Sbjct: 363 VGLWGTEMVETLAKETQ 379 >UniRef50_Q55AW0 3'-5' exonuclease n=1 Tax=Dictyostelium discoideum RepID=Q55AW0_DICDI Length = 1195 Score = 331 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 121/319 (37%), Gaps = 32/319 (10%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 + + T L L E + IA+D E RTY L+Q+ LID L + Sbjct: 246 FTWVETVRQLEELVEKLIHCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDTLLLRS 305 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +PSI K LH D++ FG + DT + P S A + Sbjct: 306 HIHMLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYP-SASLAFL 364 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG------- 174 ++ Y + +K DW R L E +YA D YLL I +L E + G Sbjct: 365 LKFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKGNKNLGSS 424 Query: 175 -----------------WLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLR----TRQ 213 L L R + + R E +D I A +L Q Sbjct: 425 GTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDDN-SHINFAKKLNLQYSPTQ 483 Query: 214 LACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHG 272 L L++L WR AR+ D +V +++ + + ++ P S+ EL +L I+ H Sbjct: 484 LNVLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSVQELLTLCSPIPPSIKQHS 543 Query: 273 KTLLALVEKAQTLPEDALP 291 L+ + KA+ P Sbjct: 544 HQLIQEILKARIEDPSKQP 562 >UniRef50_Q2SIW8 Ribonuclease D n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIW8_HAHCH Length = 398 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 191/373 (51%), Gaps = 6/373 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + I T AL + +A+DTEF+R T+YP L+QL+D + + L+D L ITDW Sbjct: 18 RWIDTPAALQEALLRLEKTDWLAVDTEFIRGTTFYPAPALLQLYDRQCVYLVDMLKITDW 77 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 S + + I K +HA SEDLE+F V P LIDTQ+ A ++ G S+V Sbjct: 78 SGVSRLFESRDILKVVHACSEDLELFNCVGLSQPCGLIDTQVANALLDGELNEGLQSLVR 137 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + G+ L+K +R+DW RPLT++Q +YA DV L P+ KL SG AL+E Sbjct: 138 QNLGIELEKHATRSDWTQRPLTDKQIQYAQEDVVVLWPLYQKLAEALRLSGKYEIALEEG 197 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 M++ V + + W+LR L LA WR ++AR RD+ + ++ Sbjct: 198 EAMRLAAAGVQDMGRYYLKLRGGWRLRKGAQQLLAKLAAWREQEARGRDIPRKKICPDDE 257 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP- 301 L ++A+ P +LG+L + + G+ +R +G L+ +V + D P+ ++ P Sbjct: 258 LIAIAQRRPRTLGQLTEITSIQGAGLRRYGAELVGMVREHMKADGDE-PETGFEMIRPPI 316 Query: 302 --GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 Y+ K +K L ++ H+I+ LLASR + + + WH + P+L+ GWRG Sbjct: 317 PREYQDLVKKVKKLTQKLAREHRINVGLLASRGLLEEFVYWHIQGGA-GTQPQLLQGWRG 375 Query: 360 ELMAEALHNLLQE 372 + + L LQ+ Sbjct: 376 RICSAPLERWLQD 388 >UniRef50_C0QAP2 Rnd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAP2_DESAH Length = 377 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 97/374 (25%), Positives = 167/374 (44%), Gaps = 4/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Y +I D+ LA+ C+ ++ +A D E + ++ L+Q+ D ++DPL I Sbjct: 2 IEYTLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLSI 61 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S LK + DP+ITK H D+ F L DT+I F G A+ Sbjct: 62 DDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFLGIQKR-SLAA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E++ +TLDK +TDW RPL++ Y+ DV YLL ++ L E G L A Sbjct: 121 LLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEGRLAWAE 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E L R + E + + ++ R LA L+ L +R A E+D + ++ Sbjct: 181 EEFELQTRVRHDNNGNEPLFLKFKGSGKMGRRSLAVLESLLQFRKTLAVEKDKPLFKIIS 240 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALP-QPMLNLM 298 E + +A P +L L L LS ++ +G +A + A PE LP P L Sbjct: 241 SEAIAKMAANQPETLHSLKELRALSPRQMDMYGTQCVAAIVGALKTPEKELPVYPRKRLP 300 Query: 299 DM-PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 +M P + +++K + S +I L + I + + + + + W Sbjct: 301 EMAPQVPERIRSLKEMRITASNKTRIEPGFLLNNTMITAIAIASPRTADELAQIDGMRNW 360 Query: 358 RGELMAEALHNLLQ 371 + E + + + + L+ Sbjct: 361 QLEALTDDILSTLR 374 >UniRef50_UPI000180BC5E PREDICTED: similar to exosome component 10, partial n=1 Tax=Ciona intestinalis RepID=UPI000180BC5E Length = 647 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 111/294 (37%), Gaps = 14/294 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + +AL L + ++ IA+D E R+Y L+QL ++D + + + Sbjct: 65 IFVDQVNALHKLMDELKEASEIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRAE 124 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L + +P+I K H D+ FG L DT A G ++ Sbjct: 125 LNILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDTGQAARALGL-QRHSLDYLL 183 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS---GWLPAA 179 Y V DK DW RPL + YA D YLL + + ++ + G L Sbjct: 184 THYCNVQADKKYQLADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKTGDPGLLHKV 243 Query: 180 LDECRLMQMRRQEVVAPEDA--------WRDITNAWQLRTRQLACLQLLADWRLRKARER 231 +D+ R + + E D + R +Q+ L+L+ WR AR+ Sbjct: 244 IDKSRDICCLKYEKPITNDTSHLVLLEKHKRRGGKKDFRPQQIEALRLIFAWRDGLARQE 303 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQT 284 D + +V+ L +A +P L +R H + LV +A+ Sbjct: 304 DESCGYVLPNHMLLQIAEILPREAQGVLACCNPIPPLLRQHVLAVHQLVVEARN 357 >UniRef50_Q7QBT6 AGAP002300-PA n=3 Tax=Culicidae RepID=Q7QBT6_ANOGA Length = 969 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 74/289 (25%), Positives = 115/289 (39%), Gaps = 8/289 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-W 63 + + LA L ++A IA+D E R+Y L+QL ++D L + D Sbjct: 270 YVDQESQLAELVRELQAAKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDYIVDALALRDEL 329 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L + DP K LH D+E G + DT A G +++ Sbjct: 330 HVLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVLQFS-RIGLQFLLK 388 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--WLPAALD 181 Y + DK+ DW RP+ E EYA D YLL I ++ E G L D Sbjct: 389 HYCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYIYDRMRNELLEKGESLLQTVYD 448 Query: 182 ECRLMQMRRQEVVA-PEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLAVNFV 238 + M +R + ED +I + RQ+ + + WR + AR D + +V Sbjct: 449 KSTFMCKQRYQKPTMNEDTVMNIYRRSRYVFDHRQMYAFREVLYWRDQIARLEDESPGYV 508 Query: 239 VREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 + + +A +P + G + S +R H L +V KA+ LP Sbjct: 509 LPQHMALDIASKLPREMQGIIACCTPVPSLVRQHLHALHKIVLKARELP 557 >UniRef50_Q01780 Exosome component 10 n=55 Tax=Eumetazoa RepID=EXOSX_HUMAN Length = 885 Score = 327 bits (838), Expect = 6e-88, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 124/319 (38%), Gaps = 13/319 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 I++ D L L E + A+D E R++ L+Q+ +ID L + D Sbjct: 289 HFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSD 348 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L L DP+I K H D+E FG + DT A ++ Sbjct: 349 MYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG-RHSLDHLL 407 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-----WLP 177 + Y V +K DW RPL E YA D YLL I K+ +E G L Sbjct: 408 KLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQ 467 Query: 178 AALDECRLMQMRRQ-EVVAPEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLA 234 R + +++ + + ++++ ++ L T+QL QLL WR + AR D + Sbjct: 468 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDES 527 Query: 235 VNFVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLP--EDALP 291 +V+ + +A +P G + +R + L+++A+ +P + + Sbjct: 528 YGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVA 587 Query: 292 QPMLNLMDMPGYRKAFKAI 310 + +P + + Sbjct: 588 AGVKKSGPLPSAERLENVL 606 >UniRef50_Q0BZZ0 Ribonuclease D n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZZ0_HYPNA Length = 388 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 168/368 (45%), Gaps = 9/368 (2%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWS 64 IT AL LC A+ + +DTEF R TY+P+L LIQ LIDP D Sbjct: 9 ITEQSALEDLCGALSESDFVCVDTEFHRETTYWPELCLIQASAPGVEGLIDPRAEDLDIR 68 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 P ++ K HA +D+E+F + G P P+ DTQ+ A G S + ++++ Sbjct: 69 PFLDLIASDRQLKVFHAARQDIEIFNRLIGHPPGPIFDTQVAAMALGFGDSISYDNLIQR 128 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 +DKS TDW+ RPL+++Q YA DV +L K+ E E +G + +E Sbjct: 129 VLRKHIDKSSQFTDWMRRPLSQKQLVYALGDVTHLRDAYLKMRDELEKAGRMNWVREEMA 188 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 ++ P +AW+ + + A + +A WR R A+E D +++++ + Sbjct: 189 ELEDPATYDTDPMNAWQRLK-LRMPKKDYAAIVVAVAAWRERTAQELDKPRRRILKDDAI 247 Query: 245 WSVARYMPGSLGELDSLG-LSGSEIR-FHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 +A P S + + L + IR HG+ L+ +++A P+ P+ + + Sbjct: 248 QEIAAQKPRSEEDFNQLRAVPNGFIRSKHGQGLVDAIKEALANPDAFAPELTRPVQNAQI 307 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 A + +K L+ VS+ + + L+A+ I+++ ++GWR ++ Sbjct: 308 PAGAPELLKVLLKHVSDENNVVPRLIANSSDIDRIARGETSEDI-----AAMTGWRYDMF 362 Query: 363 AEALHNLL 370 + LL Sbjct: 363 GQKAIALL 370 >UniRef50_A6C450 Ribonuclease D n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C450_9PLAN Length = 395 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 170/374 (45%), Gaps = 4/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+ +I +LC+ +R +A DTEFV TY P+L L+Q +DP + Sbjct: 1 MSSPLIVQQSEFIALCDQIRDAGIVAFDTEFVSEFTYRPELSLLQFAVNGQAVAVDPYEM 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SP I+ D +H G E++ + G+ P+ L+D QI R + + Sbjct: 61 DDLSPWWDIMTDDDTVIVVHGGREEVRFCRHFSGKKPRKLVDLQIAEGLRSRSFPISYTA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V E+RTDW RPLT++Q +YA DV ++L I E G L A Sbjct: 121 LVARVLNEKAGSKETRTDWRRRPLTQQQIKYALDDVKFVLKIWKIQEKELIDLGRLDWAE 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + M E+ WR ++ +L+ R+LA ++ L DWR A+E++ ++R Sbjct: 181 AEFQRMIDEVDSEFHREN-WRRVSGLHKLKPRELAIVRELFDWRDEVAQEKNQPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ L +AR P + +L + L+ + ++ + KAQ P D LPQ M N Sbjct: 240 DDLLIELARRKPATPQDLTATRDLNRKNMFKLAPEVVQRIAKAQQTPNDQLPQLMENPNT 299 Query: 300 MPGYRKAF--KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + K + + + +S L+ + + L+ +H + + P L++GW Sbjct: 300 QQNQDEQVIGKLLGIALANRCAEMNVSQTLVGTSADLRHLVRYHVYKEISDERPRLMAGW 359 Query: 358 RGELMAEALHNLLQ 371 R E+ + L ++L Sbjct: 360 RAEVCGDLLTDVLD 373 >UniRef50_UPI0001926123 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926123 Length = 758 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 115/308 (37%), Gaps = 11/308 (3%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 N I TD+ L L ++ IA+D E R++ L L+Q+ +ID L + Sbjct: 240 NLTYIDTDEGLNDLINKLKKVKEIAVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTLALR 299 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + + I DP+I K +H D+ FG + DT A + A Sbjct: 300 EEMYKINEIFSDPNILKVMHGADSDIGWLQRDFGVYVVNMFDTGQAARTL-HEDRFSLAY 358 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-----W 175 ++ +Y V K DW RP+ + YA D YLL + L + G Sbjct: 359 LLSKYCNVDAQKQYQLADWRIRPIPKEMILYAQEDTHYLLYVYDILRNQLLNKGNANKNL 418 Query: 176 LPAALDECRLMQMRRQEVV-APEDAW--RDITNAWQLRTRQLACLQLLADWRLRKARERD 232 L + + + + D++ +L +QL C +LL +WR + ARE D Sbjct: 419 LKSVYSKSTSICATMYQKPLFNNDSYIATYEKYRGRLNPQQLECFRLLFEWRDKTAREED 478 Query: 233 LAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP 291 ++ + + L+ +A +P + ++ + LV A+ Sbjct: 479 ESIVYTLPNHMLFQIAENLPKEPQGVIACCNPVPPLVKQRNTEIHLLVMLAREFDPQKCH 538 Query: 292 QPMLNLMD 299 Q N D Sbjct: 539 QSSNNTND 546 >UniRef50_UPI00016C3C86 ribonuclease D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3C86 Length = 435 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 100/367 (27%), Positives = 159/367 (43%), Gaps = 4/367 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q++T LA+ + P + DTEFV Y P+L L+Q+ E L +IDP Sbjct: 14 QLVTHPAQLAACLSHLAKAPLVGFDTEFVGEDAYRPELCLVQVSTAEQLFVIDPFECGSL 73 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +L D T +HAG ED+ + G P + D QI A G G+A +V Sbjct: 74 DGFWDLLLDRKRTVVVHAGREDVRMCYFQAGSAPPNVFDVQIAAGLVGLTYPIGYAGLVH 133 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + K E+ TDW RPLT Q YA DV YLLP KL + LP A +E Sbjct: 134 DLLRQRMQKGETLTDWRQRPLTPAQVRYAYDDVRYLLPAHRKLTERLKKYRRLPWAEEEF 193 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 R A + WR I L R LA + + WR + A + F++R++ Sbjct: 194 AAAVKRAVADDATIERWRKIKGIGALDRRGLAVAREVYGWRDKFAERLNKPPRFLMRDDL 253 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 L +AR P EL ++ R + +L + +A+ L P+P D Sbjct: 254 LIEIARRAPTRPEELHTVRGLP---RGQEEPILEAIRRAKALELGECPEPETRDNDSANV 310 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 + ++ D + ++++A L++S + ++ + ++P L GWR + + Sbjct: 311 VLLGNLLNVVLADFAGRNRLAANLISSGADLKAVVRSRVEGTDLPDVP-LCRGWRAKAVL 369 Query: 364 EALHNLL 370 L ++L Sbjct: 370 PELLDIL 376 >UniRef50_D2QXT8 3'-5' exonuclease n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QXT8_9PLAN Length = 399 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 175/373 (46%), Gaps = 5/373 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y+ I++D L C+ + + IA DTEFV +Y P+L LIQ+ +LA+IDPL + Sbjct: 1 MRYEHISSDQHLRDYCQVLASAEIIAFDTEFVSEDSYQPELCLIQVAADGNLAIIDPLEV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SP +L +P +HAG E+ G P D QI A G + + Sbjct: 61 QDLSPFWNLLTEPGRETLVHAGREEFRFCFKGAGRRPHKWFDVQIAAGLIGMEFPASYGT 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + + G +L K E+RTDW RPL++RQ EYA DV L I L+ + E G L Sbjct: 121 LAQRLIGKSLPKDETRTDWRRRPLSQRQLEYALLDVLDLEQIRDVLVGKLEKLGRLSWLD 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E Q + +E E WR + + R LA ++ L WR +A+ R+ ++R Sbjct: 181 TELAAWQDQIEEAETGE-RWRRLGGTAGMNARTLAVVRELWTWRDGEAQRRNSPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ L +A+ + ++ G+ +I + + A VE+A L +D LP Sbjct: 240 DDLLLELAKRQTADPKRIRAVRGMERGDILRYMPKITACVERAMALRDDQLPGTERRSAR 299 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKP--QNNLPELISGW 357 P + + + + + ++A L+ + + + L+ + KL +P L GW Sbjct: 300 -PQLNLLGQFLSTALGSICRRSSVAASLVGTAQDVRDLIAYRLKLGGFAPGEVPTLAQGW 358 Query: 358 RGELMAEALHNLL 370 R E++ + + +L+ Sbjct: 359 RAEVVGQVIDDLI 371 >UniRef50_A1B391 Ribonuclease D n=14 Tax=Alphaproteobacteria RepID=A1B391_PARDP Length = 401 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 113/380 (29%), Positives = 173/380 (45%), Gaps = 22/380 (5%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF---------DGEHL 52 + ++T LA CE +A P + LDTEF+R RTYY +L LIQ G Sbjct: 12 EIRTLSTTAELAEFCELAKAEPYVTLDTEFLRERTYYSKLCLIQAALPPASATKAAGGLS 71 Query: 53 ALIDPL-GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG 111 LIDPL PL + R K HA +DLE+F + G +P PL DTQI A CG Sbjct: 72 VLIDPLVEGLSLEPLYDLFRHKPTVKVFHAARQDLEIFFHDAGVMPDPLFDTQIAAMVCG 131 Query: 112 RPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 G+ ++V++ + LDKS TDW RPL++ Q YA ADV +L I L + + Sbjct: 132 FGEQVGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSAQLD 191 Query: 172 ASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARER 231 +G P +E ++ + PE+AW + R LA ++ LA +R A+ER Sbjct: 192 KTGRAPWLAEEVAVLLNPETYITRPEEAWERVRTRSG-SPRFLAVVRELARFRETYAQER 250 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTLPEDA 289 D+ V +++ L +A P S +L L + R +L+ V+ + Sbjct: 251 DIPRARVFKDDALIELASTKPLSEADLAKSRLLLRDARRGEIANGILSAVKAG--VEARD 308 Query: 290 LPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 LP+P PG ++ L+ ++ ++ L+AS ++ + + + Sbjct: 309 LPKPAPEEPGRPGNAALADLLRVLLKAKADAAGVAPRLIASASDLDAIASGA------RD 362 Query: 350 LPELISGWRGELMAEALHNL 369 LP L GWR E+ L Sbjct: 363 LPAL-HGWRAEVFGHDALRL 381 >UniRef50_Q12149 Exosome complex exonuclease RRP6 n=9 Tax=Saccharomycetaceae RepID=RRP6_YEAST Length = 733 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 123/311 (39%), Gaps = 22/311 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + T L S+ E ++ IA+D E R+YY + L+Q+ E L+D L + + Sbjct: 214 IWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLREN 273 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +PSI K H D+ G L DT + G P A ++ Sbjct: 274 LHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP-RHSLAYLL 332 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E ++ K DW RPL++ YA AD +LL I +L + S L L E Sbjct: 333 ENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYE 392 Query: 183 CRLMQMRRQEVVAP---------------EDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 R + RR E E W+ + + + + ++ L WR Sbjct: 393 SRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQWRDLI 452 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKA---- 282 AR D + FV+ + L ++ Y P + + SL +R + K L L+ A Sbjct: 453 ARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNI 512 Query: 283 QTLPEDALPQP 293 + E+A P P Sbjct: 513 KNTNEEATPIP 523 >UniRef50_C1AC33 Putative ribonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AC33_GEMAT Length = 388 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 161/373 (43%), Gaps = 4/373 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + T + + + + AIALDTE + ++ L+QL +H A+IDPL I Sbjct: 7 HYLDTVETVDTFLAGLNGVRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIGTP 66 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + L +L DP + LH DL + +G L DT++ A G ++G A+++E Sbjct: 67 TRLGVLLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLGI-RAFGLAALLE 125 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 ++ G+ LDK R DW RPLT +YAA D +LL + +L E G A +E Sbjct: 126 QFFGIKLDKKHQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWAQEEF 185 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + R E AP+ ++ + A L R+LA L+ L WR A E D A V E Sbjct: 186 TRAEGTRWEPEAPDTSFLRLKGARDLNRRELARLRELVRWRDGIAAELDRATFRVAGNEV 245 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ--PMLNLMDM 300 L +AR P + L ++ G + L + + +P+ LP+ Sbjct: 246 LLDLARQAPATRDALFAVKGFPRGMSESRAQEALQSIVRGNAVPDAELPRFPKATRWDRE 305 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P + + +K++ + + +L SR ++ ++ + + W+ E Sbjct: 306 PDFDERVARLKTVRDAAATDLNLDPGVLCSRDRMEAVVRRKPRHVDDLAELPELRRWQVE 365 Query: 361 LMAEALHNLLQEY 373 ++ A L Y Sbjct: 366 VLGPAFVKALASY 378 >UniRef50_B0U173 Ribonuclease D n=18 Tax=Francisella RepID=B0U173_FRAP2 Length = 366 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 181/369 (49%), Gaps = 14/369 (3%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I T+ L ++ E +++ IA+DTEF RTYYP+L L+Q+ + LID L D+S Sbjct: 2 IINTNKQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLEDLDFS 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 LK I D +I K +H+ + D+ + F + DTQ+ A+F G +++++ Sbjct: 62 KLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKALLKD 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 + ++K +DW RPL+++Q +YA DV +L+ I L + + + +E Sbjct: 122 ILDIEMEKESQFSDWRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQTDYKQYFYEE-- 179 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 L+++++ E E+ I N + + L+A WR A+++++ V F+ + L Sbjct: 180 LLEIQKTEFNTVENIHNKIGNIQKFSEKTQKNAILVAQWRESMAQQKNIPVRFIFDNKIL 239 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 +++A P SL D+ L + + K+++ ++ Q L +NL G + Sbjct: 240 YAIAHKNPKSLNSFDTEELKKLKP-WIKKSIITVINSKQNLEH-------INLEQKSGAK 291 Query: 305 ---KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 + I + + + K A L+ASR+ I + ++ + P + +L+ GWR E+ Sbjct: 292 ISTEINDKITNFFDIETRSFKFDASLIASRKDIRS-VAYNLSIDPNYSSNKLLVGWRYEI 350 Query: 362 MAEALHNLL 370 + + L + Sbjct: 351 VGKKLKEYI 359 >UniRef50_Q1YTB3 Ribonuclease D n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTB3_9GAMM Length = 374 Score = 320 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 178/371 (47%), Gaps = 8/371 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 I LA LCE ++ +A+DTEF+R+ T++ +L LIQL DGE LID I Sbjct: 6 HWIDNSQQLAELCEQLQDATELAIDTEFMRSDTFFAKLALIQLSDGEQCWLIDTPAIEQL 65 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL A+L P +T H+ EDLEV V P+ L D+Q+ A S G+A +VE Sbjct: 66 QPLTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIVNIGYSMGYARLVE 125 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + L K ++R+DWLARPL++RQ YAA DV YL I L+ E +E Sbjct: 126 NMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYLFRIYKLLLELLEQQQRQSWFAEEM 185 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 +Q E D + + AW+L LA L+ L +WR R AR D + +V++ Sbjct: 186 LDLQRVAAERREALDYYLRVKGAWRLDALSLAVLKRLCEWRERAARALDKPRSHIVKDNV 245 Query: 244 LWSVARYMPGSLGELDSLGL-SGSEIRFHGKTLLALVEKAQTLP-EDALPQPMLNLMDMP 301 L +A P + +L + ++ G+ +L + D LPQP+ Sbjct: 246 LLELANNKPTHMSQLHQIDDWYSRSVKRFGEQVLQEIANVDHNDLPDELPQPLSR----- 300 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 K ++ I +++E I EL+ +++++ +L + K + L+ GWRG + Sbjct: 301 AVSDVMKKMRVSINELAENQAIPKELMCNKKELESILRTTVEGKCVWPV-RLVDGWRGSM 359 Query: 362 MAEALHNLLQE 372 + AL ++ Sbjct: 360 VIPALQLVIDS 370 >UniRef50_C4QXG4 Exonuclease component of the nuclear exosome n=1 Tax=Pichia pastoris GS115 RepID=C4QXG4_PICPG Length = 717 Score = 319 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 140/350 (40%), Gaps = 24/350 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + T+ + + + + IA+D E RTYY + L+Q+ ++D L + Sbjct: 213 IYVETEQQVGDMIDTLSKADVIAVDLEHHDLRTYYGLVCLMQISTRNQDYIVDTLKLRFK 272 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL + DPSI K H D+ G L DT + G P A ++ Sbjct: 273 LQPLNKVFTDPSIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASKLLGFP-KHSLAYLL 331 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E Y+ K DW RPLT+ YA +D +LL I +L SG L L + Sbjct: 332 ETYAKFKTSKKYQLADWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIESGKLSQVLYD 391 Query: 183 CRLMQMRRQEVV----------------APEDAWRDITNAWQLRTRQLACLQLLADWRLR 226 R + +RR E ++ W+ + + + + L +WR Sbjct: 392 SRQVALRRFEYTKFRPNFPTPLVVSPLNDRKEPWKQLLYLYNIPRSRQPVFIALYNWRDE 451 Query: 227 KARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTL 285 ARE D + +V+ + L ++ P + L S + ++ + L+ +++ TL Sbjct: 452 IAREDDESTRYVLPNQLLATITSISPTDVSSLMSCSNIRTPYLKKYATELVEIIKS--TL 509 Query: 286 PEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQIN 335 E A Q + +L + KA V + ++ + L+ S++Q++ Sbjct: 510 KEGAENQDVKSLTSNGIEK---KAENVDYQTVLNSDRLYSHLMDSQKQLD 556 >UniRef50_D0KY39 Ribonuclease D n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY39_HALNC Length = 374 Score = 319 bits (818), Expect = 9e-86, Method: Composition-based stats. Identities = 114/373 (30%), Positives = 176/373 (47%), Gaps = 17/373 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++I + AL +C+ + +DTEF+R TY+PQL L+Q+ + + LIDPL + Sbjct: 14 RLIQSTSALHDVCDQIAESTWATIDTEFMRESTYFPQLCLVQIATPDAIWLIDPLAVP-L 72 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL L S HA +DLE+ G LPQ L D+QI AAF G G+A++V Sbjct: 73 APLWHELNRTSSPLVFHAAEQDLELIYLDSGALPQTLRDSQIAAAFLGLGEQIGYANLVN 132 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 V LDKS+SRT+W RPLT Q YAA DV +L + L + L +EC Sbjct: 133 RLLHVELDKSQSRTNWAQRPLTAEQQHYAADDVRFLRSMYPLLREQLATKNRLAWFDEEC 192 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + ++ WR + LR Q A L + WR ARE +L +V+ +E Sbjct: 193 AALSDPQRFQPQMTGLWRKVRGQQALRAAQRAVLDAITTWREAWARELNLPRRWVLSDEQ 252 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFH-----GKTLLALVEKAQTLPEDALPQPMLNLM 298 +A + L+ R H L A +E+A+ LP +A PQ Sbjct: 253 ALELA-----GSRQFRPNLLNPKNARHHLSVEQVDELRATIERAKQLPPEAFPQWQAYQR 307 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 P +++L+ + S+ +IS LLA+ + +L+ + + L +L +GWR Sbjct: 308 TDPETNAILNRMQALVQERSKLMEISPSLLATTDDMLRLI------RAPDALNKLTTGWR 361 Query: 359 GELMAEALHNLLQ 371 +++ L +LL Sbjct: 362 CDVIGLPLKSLLD 374 >UniRef50_Q0VNN2 Ribonuclease D n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VNN2_ALCBS Length = 357 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 122/370 (32%), Positives = 188/370 (50%), Gaps = 13/370 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y + ++ ++ A + LDTEF+R RT++PQL L+Q+ DG + LID + Sbjct: 1 MAYLWCEDNKEISEWQASLAAGSRLYLDTEFMRERTFWPQLALVQVHDGVRIRLIDTTEV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L + ++ ++ +HA SEDLE G+ P + DTQI AA G M WG+ Sbjct: 61 -DGPTLLPVFQNHTL--VMHACSEDLEAIATFTGQYPAAIEDTQIAAALSGEDMQWGYQK 117 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ GV L K +RT+WL RPL++ Q YA DV YL + L + G Sbjct: 118 VVQMLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWE 177 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC + + + V P+DAWR++ A L+ LA L LA WR + ARERDL +FV++ Sbjct: 178 EECARLLKQARSQVLPQDAWRNVKGAGLLQGESLAVLAALAPWRDQMARERDLPKSFVLK 237 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L +AR G L LG +IR G LLAL+E+A+ P L Sbjct: 238 DAQLLDLARTNRTDRGLLADLGFHPKQIRRDGDALLALIEQAR----GQTPPDPLPGPPD 293 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +K K ++S + ++E + ++L RR + L+ +PE ++GWR + Sbjct: 294 MAQKKLAKTLRSRVAIIAEELNMKPDVLMRRRWLEALIRH------PERVPEPLTGWRND 347 Query: 361 LMAEALHNLL 370 ++ + L LL Sbjct: 348 VVTQPLLELL 357 >UniRef50_D2VPJ2 3'-5' exonuclease and HRDC domain-containing protein n=1 Tax=Naegleria gruberi RepID=D2VPJ2_NAEGR Length = 956 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 120/305 (39%), Gaps = 18/305 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 I+T + L L + A A+D E R++ + L+Q+ LID L + Sbjct: 343 TWISTVEDLHKLATILEGQDAFAIDLEQHSYRSFQGFVCLMQISTRSEDFLIDTLELRQH 402 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + P I K +H D+ F L DT P A ++ Sbjct: 403 MHILNSSFTHPKIVKVMHGSDCDILWLQRDFAIYCVNLFDTGQACRTLALP-GCSLAYLL 461 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-------- 174 + Y G+ DK DW RPL +YA D YLL I +L + + Sbjct: 462 KHYCGIDADKKYQLADWRVRPLPSEMVKYAREDTHYLLYIYDRLRQDIFNTKPNTSTVSG 521 Query: 175 --WLPAALDECRLMQMRRQEV-VAPEDAWRDITNAWQLRTRQLA--CLQLLADWRLRKAR 229 + L + + MRR E + E ++ + + T ++ +++L WR AR Sbjct: 522 FERMEEVLVRSKELCMRRYEKELFSETSYLSLIKFSRGCTASISENVIRVLFKWRDTVAR 581 Query: 230 ERDLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPED 288 + D ++ +V+ + + S+A+ P + + L +R K ++ L+ KA Sbjct: 582 KDDESIRYVLPDHMILSIAQEAPTEVSQLLSCCNPVPKLVRRDAKIIVDLITKALQ--SR 639 Query: 289 ALPQP 293 +P+P Sbjct: 640 DMPEP 644 >UniRef50_Q10146 Exosome complex exonuclease rrp6 n=1 Tax=Schizosaccharomyces pombe RepID=RRP6_SCHPO Length = 777 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 134/324 (41%), Gaps = 20/324 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++T+ L+ + + ++ IA+D E R++ + L+Q+ + E ++D L + + Sbjct: 219 IWVSTESQLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREE 278 Query: 64 SPL-KAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + +P+I K H + D+ FG L DT G G A ++ Sbjct: 279 LEALNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGF-EGHGLAFLL 337 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET------EASGWL 176 ++Y DK DW RPL +YA +D YLL I L E + Sbjct: 338 QKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLM 397 Query: 177 PAALDECRLMQMRRQEVVAPE-------DAWRDITNAWQ----LRTRQLACLQLLADWRL 225 + + + + +R+ E+ + D WR++ + + L + L DWR Sbjct: 398 QSVFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRD 457 Query: 226 RKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQT 284 AR+ D +V +V+ L ++A P ++ S+ + I R + + ++ +V++A+ Sbjct: 458 SVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDIVKVVQEAEK 517 Query: 285 LPEDALPQPMLNLMDMPGYRKAFK 308 L + + + ++ + Sbjct: 518 LYNEQVDREKSQFKEVEKQNQPLA 541 >UniRef50_B4X4T0 Ribonuclease D n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4T0_9GAMM Length = 375 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 187/370 (50%), Gaps = 13/370 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y + A++ + A + LDTEF+R RT++PQL L+Q+ DGE + LID + Sbjct: 19 MAYLWCEDNQAISEWQGGLTAGTPLYLDTEFMRERTFWPQLALVQVHDGEQIRLIDTTRV 78 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L + + ++ +HA SEDLE G+ P + DTQI AA G M WG+ Sbjct: 79 -DGPTLSPVFQQHTL--VMHACSEDLEAIATFTGQYPAAIEDTQIAAALSGEDMQWGYQK 135 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ GV L K +RT+WL RPL++ Q YA DV YL + A L + G Sbjct: 136 VVQMLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAAILAERLDKLGRRAWWQ 195 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC + + + V +DAWR++ A L+ LA L L WR + ARER+L +FV++ Sbjct: 196 EECERLLNQARSVTPAQDAWRNVKGAGLLQGESLAVLAALTPWRDQMARERNLPKSFVLK 255 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L +AR G L LG +IR G LLAL+E+ + P L Sbjct: 256 DAQLLDLARASRSDRGLLADLGFHPKQIRRDGDALLALMEEGRR----QTPPDPLPGPPD 311 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +K K +++ + ++E + ++L RR + L+ + +PE ++GWR + Sbjct: 312 AAQKKLAKTLRNRVGVIAEEMDMKPDVLMRRRWLEALIRH------PDRVPEPLTGWRHD 365 Query: 361 LMAEALHNLL 370 ++ + L LL Sbjct: 366 IVTQPLLELL 375 >UniRef50_Q6AJF4 Related to ribonuclease D n=1 Tax=Desulfotalea psychrophila RepID=Q6AJF4_DESPS Length = 374 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 108/362 (29%), Positives = 164/362 (45%), Gaps = 4/362 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDW 63 +I+T + L + A+ LDTEFV RTYYPQLGLIQ+ E IDPL I D Sbjct: 6 IISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSIKDL 65 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 SPL +L D + K LH +DL + G PQ + DT++ A F G + +V Sbjct: 66 SPLGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSISTISLLQLVS 125 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 E LDKSE+RT+WL RPLTE+Q Y+ DV YL L+ + +E Sbjct: 126 EQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLSKIIGPKIKSWLQEEL 185 Query: 184 RLMQMRR-QEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 L+ +A E ++ + +L + + Q +A WR +KARE + V++++ Sbjct: 186 NLLNNPANYSTIADESRYKKVKGVNKLDRKSIGVAQEIATWREQKARELNRPRGHVIKDD 245 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +A P EL + +S +G + +A E LP Sbjct: 246 ILLEIAAIRPTRPEELANTAISTKAAERYGNDICQATARALNKKEVDLPHQQKRSQLSSQ 305 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 + A +K LIT + I LL + ++ +++ +K K + GWR E + Sbjct: 306 EKGALAQLKELITLKCDILGIDPALLGNSNELKKIIQTLYKGKTTHMRQSF--GWRKEFL 363 Query: 363 AE 364 + Sbjct: 364 KD 365 >UniRef50_UPI0001793421 PREDICTED: hypothetical protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793421 Length = 739 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 110/292 (37%), Gaps = 11/292 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + T++ L + + +A+D E RTY L+Q+ +ID L + D Sbjct: 209 FVEVYTEEQLNLMVSHLITVNELAIDLEAHSYRTYQGFTCLMQISTRNADYIIDTLYLRD 268 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L I +P++ K H D+ G + DT A G + Sbjct: 269 KLHVLNEIFTNPAVVKVFHGADSDIPWLQRDLGLYVVNMFDTYQAAKILNFSRK-GLEFL 327 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGWL 176 ++ Y V DK+ DW RPL+ YA D YLL + + + ++ Sbjct: 328 LKHYCNVDADKTFQLYDWRTRPLSTEAIFYARCDTHYLLYVYDMIKKDLMAMSTNQCNYI 387 Query: 177 PAALDECRLMQMRRQEV-VAPEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDL 233 + R EV + +D+ + + +Q+ L+ L WR + ARE D Sbjct: 388 ELVFQRSADVCKSRYEVNILRDDSHLSMYKRSKKMFDIQQMYALKHLYAWRDKLARELDE 447 Query: 234 AVNFVVREEHLWSVARYMPG-SLGELDSLGLSGSEIRFHGKTLLALVEKAQT 284 + +++ L ++ +P S G L +R + +V+ A+ Sbjct: 448 SPGYILPNHMLLKISEMLPKESFGILACCSPVPPLVRQCLHEIHYIVKNAKE 499 >UniRef50_A9V5N1 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V5N1_MONBE Length = 837 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 112/288 (38%), Gaps = 15/288 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + T +AL L E +++ +A+D E RTY L+QL LID L + D Sbjct: 267 TWVGTREALVGLIERLKSVSELAIDLEAHSYRTYQGFTCLMQLSTRSEDYLIDTLALRDD 326 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I DP+I K LH D+ + DT P A ++ Sbjct: 327 LKLLNVIFADPAILKVLHGADSDILWLQRDHSLYIVNMFDTGQATRVLNFP-RHSLAWLL 385 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGWLP 177 + Y DK DW RPL+E YA D +LL I +L E E + L Sbjct: 386 QHYCNFKADKKYQLADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQGNEQANLLR 445 Query: 178 AALDECRLMQMRRQEVVAP-----EDAWRDITNAWQLRTRQLACLQLLADWRLRKARERD 232 A + + ++R E EDA ++ + L + L WR + AR+ D Sbjct: 446 AVYQRSKELCLQRYEKPFYSQATAEDALNRMSRS--LVPSAVELFMALHAWRDQVARDED 503 Query: 233 LAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALV 279 + +V+ + L +A P G+ L +R + + + ++ Sbjct: 504 ESPRYVLPDHMLLELASRAPTETGQILACCQPIPPLVRVNVQLIQDII 551 >UniRef50_C4XX47 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4XX47_CLAL4 Length = 738 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 134/297 (45%), Gaps = 20/297 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + + T DAL + EA+R+ IA+D E R+YY L+Q+ + E ++D L + D Sbjct: 220 KWVDTVDALQEMIEALRSSTEIAIDLEHHDYRSYYGITCLMQISNREQDWIVDTLALHDD 279 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I +P+I K LH + D+ G L DT + G P + A ++ Sbjct: 280 LRDLNEIFANPAILKVLHGANMDIIWLQRDLGLYIVSLFDTYHASKKLGFP-KFSLAYLL 338 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA--SGWLPAAL 180 E ++ K DW RPLT+ +YA AD +LL I +L + G + L Sbjct: 339 ENFAHFKTSKKYQLADWRIRPLTDAMMQYARADTHFLLNIYDQLRNKLLNAGQGKVQEVL 398 Query: 181 DECRLMQMRRQE----VVAPEDAW----------RDITNAWQLRTRQLACLQLLADWRLR 226 E R + RR E D W R + N + + ++ +Q L +WR + Sbjct: 399 YESRKVASRRFEFNSFKQDQTDNWMHSYGGMGQERWVMNQYNIEPERIEIVQALINWRDK 458 Query: 227 KARERDLAVNFVVREEHLWSVAR-YMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEK 281 ARE+D + +++ + L +++ P ++ ++ G S +R + K L L+EK Sbjct: 459 VAREKDESTRYIMSNQVLANLSSLVAPVDASKVHNAAGSQYSIVRQNSKELAELIEK 515 >UniRef50_B3RZJ7 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3RZJ7_TRIAD Length = 535 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 10/294 (3%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW 63 +IT D L L E +++ A+D E R+Y + L+Q+ + ++D L + + Sbjct: 241 VITEKDELKDLLETLKSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADYIVDTLALRSEL 300 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L + DP I K LH D+ F + DT A P + + ++ Sbjct: 301 WTLNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDTGQAARLLQFP-RFSLSYLLL 359 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS----GWLPAA 179 +Y VT +K DW RPL + +YA D YLL I L E + L + Sbjct: 360 KYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYIFDVLTNELMNASTSVDLLKSN 419 Query: 180 LDECRLMQMRRQEVV-APEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 D + + +R E + ++ ++ + + +Q L WR AR+ D + N Sbjct: 420 FDRSKKICLRTYEKPVFNKKSYLNLLYKHKGRFNHQQNYAFAKLYSWRDSVARDNDESAN 479 Query: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDA 289 FV+ L +A +P G L + +R + + +++KA+ + Sbjct: 480 FVLPNHMLLQIAENLPREPQGILACCNPIPTLVRQYIGDIHQIIKKARERSINE 533 >UniRef50_Q2G8P2 Ribonuclease D n=10 Tax=Sphingomonadales RepID=Q2G8P2_NOVAD Length = 405 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 107/374 (28%), Positives = 177/374 (47%), Gaps = 12/374 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 + +ITT +ALA LCE + + +DTEF+R TY+P+L L+Q+ D + A IDPL Sbjct: 4 HPLITTTEALADLCERLAKADFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPLAPGL 63 Query: 62 DWSPLKAIL-RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SPL +L + + K HAG +D+E+ N+ G+ P P+ DTQI + G+++ Sbjct: 64 DMSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKTPHPIFDTQIAMMAVSQSEQIGYSN 123 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE + G+++DK TDW RPLTERQ EYA DV +L I KL+ +G Sbjct: 124 LVESWLGLSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGEWLD 183 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + + W+ I + L L+ LA WR R+A ++++ ++R Sbjct: 184 IEMEKLADPENYRTDMDTVWQKIRAPSR-NPAVLGRLKSLAAWREREAMDKNIPKGRIMR 242 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTLPEDALPQPMLNLM 298 +E L +A + P +L + + + + G+ L+ + ++ L + +P Sbjct: 243 DETLADIASHPPREQHDLAKVRGLSAGWKDNDIGRRLMQTLADSKPLTDAEMPPKAPRGA 302 Query: 299 DMPGYRKAF-KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + +K L+ S I+A LLA + L + P ++ GW Sbjct: 303 PLGKEGALVADLLKLLLKIRSREIDIAARLLARTDDLELLAAGQRRNLP------ILEGW 356 Query: 358 RGELMAEALHNLLQ 371 R E L++ Sbjct: 357 RFEQFGRDALELVE 370 >UniRef50_A3GG05 Ribosomal RNA processing 3'-5' exonuclease n=8 Tax=Saccharomycetales RepID=A3GG05_PICST Length = 792 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 80/357 (22%), Positives = 140/357 (39%), Gaps = 27/357 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + T + L + E ++ IA+D E R+YY + L+Q+ + + +ID L + D Sbjct: 234 TWVDTVEELQKMVEELKKSSEIAVDLEHHDYRSYYGIVCLMQISNRDQDWIIDTLALRDD 293 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +P I K H D+ G L DT + G P + A ++ Sbjct: 294 LECLNTVFTNPHIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKSLGFP-KFSLAYLL 352 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--WLPAAL 180 E ++ K DW RPL+ YA +D +LL I +L + +G L L Sbjct: 353 ETFAHFKTSKKYQLADWRIRPLSPPMMAYARSDTHFLLSIFDQLKNKLIDAGNEKLQRVL 412 Query: 181 DECRLMQMRRQEVVA--------------------PEDAWRDITNAWQLRTRQLACLQLL 220 + R + RR E P + + I + + + + + ++ L Sbjct: 413 FDSRQVAKRRFEYTPFRPLTNNINSRVSCPVMASNPREPFSSIMVQYNVPSHKKSVVEAL 472 Query: 221 ADWRLRKARERDLAVNFVVREEHLWSVAR-YMPGSLGE-LDSLGLSGSEIRFHGKTLLAL 278 +WR R A+ D +V FV+ + L ++A P + + L + +R + K + L Sbjct: 473 YNWRDRIAKIEDESVRFVMPNQLLVNLANLNQPVDVAKVLGASHFVSEHVRLNAKEVAEL 532 Query: 279 VEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITD-VSETHKISAELLASRRQI 334 +E L D + D R + S I + V+E S +LL + Sbjct: 533 LENTLKLASDNDWDLVDKWNDAQNGRSVAEVDYSNIDEDVAEQTGESFDLLCQSLDV 589 >UniRef50_Q5GT27 Ribonuclease D n=10 Tax=Wolbachia RepID=Q5GT27_WOLTR Length = 399 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 99/377 (26%), Positives = 182/377 (48%), Gaps = 25/377 (6%) Query: 5 MITTDDALASLCEAV--RAFPAIALDTEFVRTR-TYYPQLGLIQLFDGEHLALIDPLGIT 61 +I T L +CE + + IA DTEF+R TYYP+L LIQ+ GE ++D L Sbjct: 2 LINTTSELEDICEELIAKKPKFIAADTEFIRNHLTYYPRLSLIQISYGEKSFIVDALAPE 61 Query: 62 -DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS-WGFA 119 D S +K I+ + ITK H+ +D+E VF +P P+ DTQ+ A FC G++ Sbjct: 62 VDLSFIKKIMLNREITKVFHSCRQDIESLFTVFKCIPAPIFDTQVAAMFCHYYHDFIGYS 121 Query: 120 SMVEEYSGVTLDK-SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 +VE+Y GV LDK +DWL RPL++ Q +YA +DV +L + L E SG + Sbjct: 122 KVVEQYQGVVLDKIKAKNSDWLRRPLSKDQLDYAISDVVHLYDLHQILCDRLEESGRMGW 181 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 +E + + + +P+DAW+ I ++ + + ++ +++W+ A+ ++ N + Sbjct: 182 FHEEMESVVDINKYLHSPKDAWKRIKFNYEANPKLMIIIKAVSEWQETLAQRYNINRNKI 241 Query: 239 VREEHLWSVARYMPGSLGELDSL--GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ--PM 294 V VA + ++ +D + L + + LL ++ ++ + Q + Sbjct: 242 VNNAV---VAGFFEKNVEHVDEVLDDLRKNTKNIREEDLLEFIDVFNENEKNFVQQDYTL 298 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 N D R F + ++ + + IS +L++S+ ++ ++ + +L Sbjct: 299 SNSYD----RSVFDMLSIILESKCKENNISRKLVSSKDELVGSMSG--------QVDKLF 346 Query: 355 SGWRGELMAEALHNLLQ 371 GWR + ++ + L Sbjct: 347 KGWRYDFFGRSVKSFLN 363 >UniRef50_A5DWN7 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DWN7_LODEL Length = 826 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 125/310 (40%), Gaps = 25/310 (8%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + ++ L ++ E ++A IA+D E R+YY + L+Q+ + E +ID L + D Sbjct: 232 IWVDNEEQLDAMIEELKAASEIAVDLEHHDYRSYYGLVCLMQISNREKDWVIDTLALRDE 291 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L I + I K H D+ G L DT + G + ++ Sbjct: 292 LSKLNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRQLGF-AKFSLQYLL 350 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + ++ K DW RPL YA +D +LL I +L + L L E Sbjct: 351 DTFAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFLLYIYDQLRNKLIDQDKLSKVLFE 410 Query: 183 CRLMQMRRQEVV---------------------APEDAWRDITNAWQLRTRQLACLQLLA 221 R + RR E P++ W I + + + + +++L Sbjct: 411 LRQVAKRRFEYTKYRPLSNTPGNGQVSCPIMASNPKEPWGSIMYQYNVPSFKKHIVEVLY 470 Query: 222 DWRLRKARERDLAVNFVVREEHLWSVAR-YMPGSLGELDSLGLSGSE-IRFHGKTLLALV 279 +R ARE D +V +++ + L S++ P ++ + + SE +R H K + +L+ Sbjct: 471 KYRDAVAREEDESVRYIMPNQLLVSLSMLEAPVETEKVLNCHVYVSEHVRMHAKEIASLI 530 Query: 280 EKAQTLPEDA 289 A E + Sbjct: 531 NLALKDSEKS 540 >UniRef50_Q75CB2 ACL001Cp n=2 Tax=Saccharomycetaceae RepID=Q75CB2_ASHGO Length = 745 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 18/299 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + ++L+ + + ++ +A+D E R+YY + L+Q+ L+D + + D Sbjct: 214 IWVDNVESLSQMLDELKEVKELAVDLEHHDYRSYYGIVCLMQISSRSKDWLVDTIALRDD 273 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L IL DP++ K H D+ G L DT + G P A ++ Sbjct: 274 LHVLNVILPDPTVVKVFHGAFMDMIWLQRDLGLYVVSLFDTYHASRALGFP-KHSLAYLL 332 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E ++ K DW RPL + +YA +D +LL I L +G L L+ Sbjct: 333 ETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSIYDDLRNALVKAGKLAEVLNA 392 Query: 183 CRLMQMRRQEV---------------VAPEDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 R + RR E + + WR + + L + L+ L +WR Sbjct: 393 SRNVAKRRFEYTSFRPRIPDSNVYSPIESTEPWRKLMYQYNLPPSKEPLLKKLYEWRDTV 452 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEKAQTL 285 AR D +V +V+ + L S+ P + S+ ++ +R + +TL L+++ Sbjct: 453 ARRDDESVRYVMPNQLLVSLVSLSPSETAGVLSVSTYVTDYVRSNARTLANLIKRTLET 511 >UniRef50_B6K2U5 Exosome complex exonuclease RRP6 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K2U5_SCHJY Length = 782 Score = 310 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 132/363 (36%), Gaps = 22/363 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + ++L S+ E ++ IA+D E R+Y + L+Q+ ++D L + + Sbjct: 218 IWVDNSESLHSMLEELKQATEIAVDLEHHDYRSYSGFVCLMQISTRNQDWIVDTLELREE 277 Query: 64 SPLKAI-LRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 I DP I K LH + D+ FG L DT G G A ++ Sbjct: 278 LECLNIVFTDPKIIKVLHGATMDVIWLQRDFGLYLVGLFDTYYATKALGF-EGHGLAFLL 336 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET------EASGWL 176 ++Y DK DW RPL + +YA +D +LL + L VE + Sbjct: 337 KKYCQFEADKRYQMADWRIRPLPKEMLKYAQSDTHFLLYVFDCLRVELLEQSSRRKEDLM 396 Query: 177 PAALDECRLMQMRRQEVVAPE-------DAWRDITNAWQ----LRTRQLACLQLLADWRL 225 + + +RR E A + D WR + W + LA + L WR Sbjct: 397 QYVVKSSDDVALRRYEREAYDEIYGLGTDGWRHVLTKWGSSKIIGREALAVFKSLHRWRD 456 Query: 226 RKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQT 284 + AR D +V +V+ L +A MP +L S +R + ++ +++ A+ Sbjct: 457 QVARNEDESVRYVMPNHLLVKLAASMPSDPSDLYTSARQLPPLVRMYANEIIEVIQNARE 516 Query: 285 LPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL 344 D + + + +V I EL Q ++ L Sbjct: 517 DEVKRATTDEQRTEDTVMQDQLVTPVTT--REVGAEIVIHTELFEPSTQNKAIIESMSTL 574 Query: 345 KPQ 347 Sbjct: 575 NSP 577 >UniRef50_UPI0001C31C49 Ribonuclease D n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C49 Length = 396 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 112/370 (30%), Positives = 182/370 (49%), Gaps = 12/370 (3%) Query: 9 DDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLA-------LIDPLGIT 61 DD +A + E RA + +DTEF+ Y L L+Q+ + A L DP Sbjct: 12 DDEIARVAELARAAGRLGIDTEFMSEGRYRALLCLVQVAVDDADAPNGVRIALFDPFDKL 71 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D++PL A+L DP I LHA +D+ + + + + DTQ+ A F G G+ ++ Sbjct: 72 DFAPLAAVLADPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFAGYGAQTGYGNL 131 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 + G + K+ S T W ARPLTE Q YAA DV +LL ++ L + A G L A + Sbjct: 132 LGAALGQRVGKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGRLQWAQE 191 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 ECR M E PE A+ + + QL R A + +A WR R A++ D V ++ + Sbjct: 192 ECRRMDEATDER-DPETAYERLPRSGQLDPRARAVAREVAAWRERTAQQEDKPVGTILPD 250 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A+ P S EL+ + GL G +R G+ ++ VE+ + + + + Sbjct: 251 PALVEIAKRKPSSPRELEQIRGLHGGHLRRRGQAIVEAVERGRAA--EPIAREARRPGGE 308 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 G ++++I + +++ EL+ASR + Q++ + PQ ++ +SGWR E Sbjct: 309 QGDAPLIALVEAVIRTRAIEAELAYELVASRADLEQIVIAARRGDPQPSV-RALSGWRRE 367 Query: 361 LMAEALHNLL 370 L+ E + LL Sbjct: 368 LVGEEIAELL 377 >UniRef50_A9LLI7 RRP6-like protein 2 n=6 Tax=rosids RepID=A9LLI7_ARATH Length = 870 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 117/296 (39%), Gaps = 15/296 (5%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 ++ + L L +R+ A+D E + R++ L+Q+ ++D + Sbjct: 260 FKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRI 319 Query: 63 W--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 L+ I +DP K +H D+ FG L DT + Sbjct: 320 HIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNL-ERNSLEF 378 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW----- 175 +++ + GVT +K DW RPL E YA D YLL I + +E + Sbjct: 379 LLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 438 Query: 176 ---LPAALDECRLMQMRRQEV-VAPEDAWRDITN--AWQLRTRQLACLQLLADWRLRKAR 229 L + + E + E+++ + A QLA + L +WR AR Sbjct: 439 DSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQLAIVAGLCEWRDFIAR 498 Query: 230 ERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEKAQT 284 D + +V+ + L +A+ MP S+G+L + S I + ++++++ ++ Sbjct: 499 AEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIERNVDSVVSVIRQSMQ 554 >UniRef50_UPI000186D892 conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186D892 Length = 737 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 108/294 (36%), Gaps = 11/294 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + +IT + + + E + IA+D E R++ L+Q+ + +ID + + Sbjct: 250 FHLITKPEEIDPMIENLEKCKEIAIDLEHHSYRSFQGFTCLLQISTRDTDYVIDTIALRS 309 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L I +P+I K H D+ + DT S A + Sbjct: 310 KLEGLNKIFTNPNIVKVFHGADLDILWLQRDLSLYVVNMFDTHQAGKLLNYS-SLSLAYL 368 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGWL 176 + + + K DW RPL + YA D YLL I L E L Sbjct: 369 MFHFCKIVAQKHFQMADWRIRPLPDELLAYAREDTHYLLYIYDNLRNILIEKSNEQKNLL 428 Query: 177 PAALDECRLMQMRRQEVVA-PEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDL 233 ++E + ++ + E + I + RQ LQ L WR ARE D Sbjct: 429 RTVINESTRICLKTYKKPNFDESGYMSIYTRSKKIFDNRQKYALQRLYAWRDSTARELDE 488 Query: 234 AVNFVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 ++ +V+ + +++ +P G L +R + L ++ KA+ P Sbjct: 489 SLAYVLPNHMMLNISEVLPREAQGILACCNPIPLPVRQNLLKLHLIILKAREQP 542 >UniRef50_A4RDR3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4RDR3_MAGGR Length = 854 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 113/301 (37%), Gaps = 21/301 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E ++ IA+D E RTY+ L L+Q+ E ++D L Sbjct: 258 TYVDTYEGVLEMLEDLKQAKEIAVDLEHHDFRTYHGLLSLMQISTREKDWIVDTLKPWRQ 317 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DPSI K H D+ G L DT A P S A + Sbjct: 318 QLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALMYP-SKSLAYL 376 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------- 173 ++++ DK DW RPL E YA +D YLL + + E Sbjct: 377 LKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYDMMRNELLRQSVSGDPHR 436 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAW---------QLRTRQLACLQLLADWR 224 L L + ++R E + + W Q + + L WR Sbjct: 437 DLLERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRLPNTFSREQFSVYRALHKWR 496 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALVEKAQ 283 AR D + F++ + L +AR MP + +L L + G +R L+ L++ ++ Sbjct: 497 DDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNVGPPVRNAVDELVDLIQDSR 556 Query: 284 T 284 Sbjct: 557 Q 557 >UniRef50_C9SGG4 3'-5' exonuclease domain-containing protein n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SGG4_VERA1 Length = 894 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 72/306 (23%), Positives = 119/306 (38%), Gaps = 21/306 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + + T + + + ++ IA+D E TRTY L L+Q+ + ++D L Sbjct: 269 KWVDTYEGVLEMLGELKKAKEIAVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRH 328 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +P I K H D++ G L DT A G P A + Sbjct: 329 QLEVLNEVFTNPKIVKVFHGAHMDMQWLQRDLGLYINGLFDTFFAAEILGYPQR-SLAYL 387 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE--------AS 173 ++ + DK DW RPL E YA +D YLL I ++ E + Sbjct: 388 LKRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIFDRIRNELLDASDRSKPET 447 Query: 174 GWLPAALDECRLMQMRRQE--VVAPEDAWRD-------ITNAWQLRTRQLACLQLLADWR 224 + L + + + + R E PE + N L +Q A + + WR Sbjct: 448 DIIQQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKNPMPLSGKQFAAYRAIWKWR 507 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQ 283 AR D + +V+ + +AR+MP L SL S S I + + + A +K + Sbjct: 508 DDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHSNSIIAKRNVGEIWAAFKKGR 567 Query: 284 TLPEDA 289 +D+ Sbjct: 568 DEGDDS 573 >UniRef50_B0DUK1 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0DUK1_LACBS Length = 854 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 113/318 (35%), Gaps = 40/318 (12%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 I+T D L ++ ++ IA+D E R+Y L L+Q+ D E+ ++D L + D Sbjct: 243 IWISTPDELQAMLAKLKKATEIAVDLEHHSYRSYTGFLCLMQISDRENDWIVDLLALRDE 302 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I DP I K LH D+ F L DT + P G A+++ Sbjct: 303 IEQLNEIFTDPKIVKVLHGAESDVVWLQQDFNVYIVNLFDTFHASKLLDFP-RHGLANLL 361 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE----------- 171 E Y DK DW RPL + +YA +D +LL I L Sbjct: 362 EMYCDYIPDKRYQLADWRIRPLPQEMLDYARSDTHFLLFIYDNLRNALLDRSRSRSSSPS 421 Query: 172 ------ASGWLPAALDECRLMQMRRQEVVAPEDA-------WRDITNAWQ---------- 208 L L +R + A W + W Sbjct: 422 SSSQKPQHALLTQVLTRSAETSLRVYVKEPYDAADGSGPGGWDTLAKKWNKGALMAGGPG 481 Query: 209 --LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL--GLS 264 + Q + WR R ARE D + + + ++L+ +A P + L + Sbjct: 482 VGIGAMQREVYVRVHGWRERVAREEDESTRYTMPNQYLFQLAEQPPADMAALLGVFKSSV 541 Query: 265 GSEIRFHGKTLLALVEKA 282 + +R K LL ++ + Sbjct: 542 PALVRRRAKELLEVIREG 559 >UniRef50_Q17951 Protein C14A4.4a, confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q17951_CAEEL Length = 876 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 121/320 (37%), Gaps = 7/320 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 MI T + L +L + + + A+D E + R+Y LIQ+ + +IDP I D Sbjct: 279 TMIDTKEKLEALTKTLNSVKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDH 338 Query: 64 -SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L +P I K H D+ +G L DT + P + A + Sbjct: 339 VGMLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLFDTYVAMKKLKYP-KFSLAYLT 397 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW--LPAAL 180 ++ V LDK DW ARPL YA D YLL L + L Sbjct: 398 LRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDTKDLANVY 457 Query: 181 DECRLMQM--RRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 E + + ++ V P+ +I + L TRQ L L WR AR D + +FV Sbjct: 458 SESSDLCIKVYKKPVFNPKGYLTEIKFRFTLNTRQDYALTHLFKWRDVVARAEDESPHFV 517 Query: 239 VREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 + + S++ +P +G + ++ +L ++ +A+ + + + Sbjct: 518 LPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQRTGDILKIIVEARDVKLEKVGLSAKER 577 Query: 298 MDMPGYRKAFKAIKSLITDV 317 D R IT V Sbjct: 578 NDAQEARGVMNDTMDHITSV 597 >UniRef50_UPI000180BF09 PREDICTED: similar to exosome component 10 n=1 Tax=Ciona intestinalis RepID=UPI000180BF09 Length = 669 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 128/292 (43%), Gaps = 17/292 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + + L L ++ IA+D E R+Y L+QL + ++D L + + Sbjct: 118 IFVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRAN 177 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L + +P I K H +D++ FG L DT A +S + ++ Sbjct: 178 LNILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELGLSREY--LL 235 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS----GWLPA 178 + Y V DK + DW RPL++ +YA D YLL I + ++ G + Sbjct: 236 KHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAGGVGLMHK 295 Query: 179 ALDECRLMQMRRQEVVAPED-AWRDI--TNAWQL---RTRQLACLQLLADWRLRKARERD 232 + R + + + E + +D + + A ++ ++L L+L+ WR AR++D Sbjct: 296 VIGNSRDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWEPQELEALRLIYMWRDELARQKD 355 Query: 233 LAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQT 284 + +++ + L +A+ +P ++ ++ G+ + + T+ L+ +A+ Sbjct: 356 ESCGYIMPNKMLVQIAKTLPQTVQDVRLQGV----WQQYVPTIHQLIVEARN 403 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 82/193 (42%), Gaps = 16/193 (8%) Query: 100 LIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYL 159 L DT A +++ Y V DK + DW RPL++ +YA D YL Sbjct: 430 LFDTGQAARELKLG--CSLEYLLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHYL 487 Query: 160 LPITAKLMVETEASG----WLPAALDECRLMQMRRQEVVAPEDAWRD---ITNAWQL--- 209 L I + ++ + + R + + + E + +D A ++ Sbjct: 488 LYIYDMMKLDLLEKAGDAKLMRKVIGNSRDICLLKYEKLIIDDTSHRKLLRKGAGKIEDW 547 Query: 210 RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIR 269 ++L L+L+ WR + AR+ D + +V+ + L +A+ MP + +L G+ + Sbjct: 548 EPQELEALRLIYMWRDKLARQMDESCGYVLPNKLLVQIAKTMPQTEQDLRLQGVR----Q 603 Query: 270 FHGKTLLALVEKA 282 + +T+ L+ +A Sbjct: 604 QYVQTIHQLIVEA 616 >UniRef50_A0Z9G7 Ribonuclease D n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z9G7_9GAMM Length = 380 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 115/375 (30%), Positives = 183/375 (48%), Gaps = 13/375 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + + AL + + +A+DTEF R T+YP++ LIQL L+DPL + D Sbjct: 10 RWVRDTTALNEMVALISQEAFVAVDTEFRRRDTFYPEVALIQLAAAGQCWLLDPLTLDDT 69 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL+ + R + K LH+ SEDLEVF G LP+P+IDTQ AA G + +V Sbjct: 70 QPLQKLFRQTDLIKILHSASEDLEVFERWLGVLPRPMIDTQKAAAMLGLGFGLSYRDLVH 129 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + + K E+++DWL RPLT+ QC YA DV +L L EASG+L L+E Sbjct: 130 DLLSIDVAKDETQSDWLVRPLTDAQCHYAMQDVTFLAQCWPILEARAEASGYLSWILEES 189 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 M V +AW+L ++QLA L L DWR KAR+R+ N+++ ++ Sbjct: 190 AAM------VTGGRGPLAKFKSAWKLNSQQLAVLLDLIDWRESKARDRNRPRNWILHDKV 243 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 + +A+ +P S+ +L + + +R GK L+ L+E A P P+ + Sbjct: 244 ILDLAKRIPTSMPQLAAADSMPAGVVRREGKQLMTLIESASERGLSDPPAPIPAPSNS-R 302 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 RK K++ + ++ ++ E+L R++ L ++ P GWR + Sbjct: 303 VRKLAKSLAPAMAALALELGMNVEILMPSRELEMLASFA-TGDGSVPRPVHWQGWRKAAV 361 Query: 363 AEALH----NLLQEY 373 + L LL E+ Sbjct: 362 IQPLELEAQRLLGEH 376 >UniRef50_Q7S5A8 Related to nucleolar 100K polymyositis-scleroderma protein n=3 Tax=Sordariales RepID=Q7S5A8_NEUCR Length = 822 Score = 307 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 83/351 (23%), Positives = 141/351 (40%), Gaps = 26/351 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E ++ IALD E R+Y L L+Q+ E +ID L Sbjct: 229 IWVDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRH 288 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +P+I K LH D+ G L DT A G P + Sbjct: 289 KLEVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGR-SLGYL 347 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------- 173 + +++ DK DW RPL E YA +D YLL I ++ E Sbjct: 348 LSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVERSTPGKPKP 407 Query: 174 GWLPAALDECRLMQMRRQEVVAP-------EDAWRD--ITNAWQLRTRQLACLQLLADWR 224 L L+ + + ++R E ++ W + + + Q A + + WR Sbjct: 408 DLLEQVLERSKDVALQRYENLSYNVETGQGPRGWYNVLLKSPTLYNGEQFAVYKAVHQWR 467 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEKAQ 283 AR D + F + ++ L +AR +P L S+ S ++ ++ H L +++KA+ Sbjct: 468 DNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDDLFDVIQKAR 527 Query: 284 TLPEDALPQP-MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQ 333 E+ + P M+++ A I ++I D S+ + EL A R Q Sbjct: 528 ---EEGVNGPKMMDIFKSESSILAPAKIAAVIADDSDIPDV-KELKADRSQ 574 >UniRef50_C5FLQ1 Ribosomal RNA processing 3'-5' exonuclease n=1 Tax=Microsporum canis CBS 113480 RepID=C5FLQ1_NANOT Length = 810 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 77/339 (22%), Positives = 129/339 (38%), Gaps = 22/339 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + ++ ++ IA+D E Y+ + L+Q+ E ++D L Sbjct: 247 TFVETMEDVHAMLAELKKAKEIAVDLEHHDAHVYHGLVCLMQISTREQDWIVDTLKPWRD 306 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DPSI K LH S D+ G L DT A+ P + Sbjct: 307 QLQVLNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASMLQLPKK-SLKFL 365 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-EASGW--LPA 178 +++Y G DK DW RPL +YA +D +LL I +L E EASG + Sbjct: 366 LQQYVGFDADKQYQTADWRIRPLLPGMLDYARSDTHFLLYIFDRLRNELIEASGRDAIEY 425 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQ---------LRTRQLACLQLLADWRLRKAR 229 L+ + ++R E + W L Q A + L +WR + AR Sbjct: 426 VLERSKECALQRYERPTYDSLRGRGNGGWHDMLSNSPVLLTREQFAVFRALHEWRDKTAR 485 Query: 230 ERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGS-EIRFHGKTLLALVEKAQTLPED 288 D + V+ + L+ +A+ MP + L S +R + + AL+ KA+ Sbjct: 486 TDDESTQTVLSKRSLFRIAQEMPVDKFAVLQLASPVSASLRSRTEEVAALIAKAKKNSST 545 Query: 289 ALPQPMLNLMDMPGY-----RKAFKAIKSLITDVSETHK 322 P+ + P + A K + ++ Sbjct: 546 G-PEMHEMIRRSPTVATTTGQARVVAAKGAMDREAQDIN 583 >UniRef50_B2VXT5 Exosome complex exonuclease Rrp n=2 Tax=Pleosporineae RepID=B2VXT5_PYRTR Length = 786 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 77/337 (22%), Positives = 136/337 (40%), Gaps = 23/337 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 ++ T +ALA++ ++ IA+D E RTY + L+Q+ + ++D L Sbjct: 206 TLVDTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRR 265 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DPSI K LH D+ G L DT A G + A + Sbjct: 266 KLECLNEVFADPSILKVLHGAFMDIVWLQRDLGLYIVGLFDTFHAARALGY-QAASLAYL 324 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE--------AS 173 +E + K DW RPL++ EYA AD +LL I + E Sbjct: 325 LELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFDNMRNELVNKSDFSNPEK 384 Query: 174 GWLPAALDECRLMQMRRQEVVAPED-------AWRDITNAW--QLRTRQLACLQLLADWR 224 + L + ++R E + W + + Q +Q + + + +WR Sbjct: 385 NKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISRTPVQFTRQQFSVFRAVHEWR 444 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGS-LGELDSLGLSGSEIRFHGKTLLALVEKAQ 283 R+ D + F++ ++SVAR MP + +G +++ G R H L+ +V +A+ Sbjct: 445 DTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNAIQHVGHITRAHADELVGVVAEAK 504 Query: 284 T--LPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVS 318 L + + + DM ++A + I +V+ Sbjct: 505 ERGASGPELHEVLQAVADMQRAQRAESEAATKIAEVA 541 >UniRef50_C5DEP9 KLTH0C11066p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DEP9_LACTC Length = 735 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 76/304 (25%), Positives = 119/304 (39%), Gaps = 18/304 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + + DAL + + IA+D E RTYY L+Q+ E LID + + D Sbjct: 216 EWVDNTDALKLMLNELLLANEIAIDLEHHDYRTYYGITCLMQISTREKDWLIDTIALRDD 275 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + DP ITK LH D+ G L DT + G P A ++ Sbjct: 276 LWILNEVFTDPKITKVLHGAFMDIIWLQRDLGLYIVSLFDTYHASRLLGSP-KHSLAYLL 334 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E Y+ K +DW RPL + YA AD +LL I + L L + Sbjct: 335 ERYAHFKTSKKYQLSDWRVRPLPKALKAYARADTHFLLNIYDNMRNSLIEQNKLSQVLHD 394 Query: 183 CRLMQMRRQE---------------VVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 R + RR E + ED WR + + + + ++ L +WR Sbjct: 395 SRNVAKRRFEFTTFRPKIVTSHVFSPIEREDPWRTLMFQYNIPQSKSLLVRRLYEWRDMV 454 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLP 286 AR D + +V+ + L S+A P + + + IR + K+L L++K+ Sbjct: 455 ARRDDESPRYVIPNQLLVSLAVNAPTTPALIMATSTFVTEHIRQNAKSLALLIKKSLESS 514 Query: 287 EDAL 290 + Sbjct: 515 SNEF 518 >UniRef50_B9I623 Predicted protein n=2 Tax=Malpighiales RepID=B9I623_POPTR Length = 858 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 120/299 (40%), Gaps = 15/299 (5%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +++++ L L +R A+D E + R++ L+Q+ ++D L + Sbjct: 232 SFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLR 291 Query: 62 DW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 L+ + +DP+ K +H D+ FG L DT + + Sbjct: 292 IHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDTGQASRVL-KLERNSLE 350 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW---- 175 ++ + GVT +K DW RPL + YA D YLL I + + Sbjct: 351 HLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLHIYDLMRALLLSKPIDNEN 410 Query: 176 ----LPAALDECRLMQMRRQEV-VAPEDAWRDITN--AWQLRTRQLACLQLLADWRLRKA 228 L + M+ E + E+++ ++ + +QLA + L +WR A Sbjct: 411 ADPPLLEVYKRSYDVCMQLYEKELFTENSYLNMYGLPSAGFNAQQLAIVAGLYEWRDAIA 470 Query: 229 RERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALVEKAQTLP 286 R D + +++ + L +A+ MP ++ +L L S S I H ++++++ + Sbjct: 471 RAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKSKHSYIERHLSSVVSIIRHSMQTS 529 >UniRef50_A6R753 Predicted protein n=4 Tax=cellular organisms RepID=A6R753_AJECN Length = 807 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 77/365 (21%), Positives = 137/365 (37%), Gaps = 23/365 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + S+ ++ IA+D E +Y+ + L+QL + ++D L Sbjct: 230 TFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQLSTRDKDWIVDTLKPWRE 289 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L + DP I K LH + D+ G L DT A P + Sbjct: 290 ELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKK-SLKFL 348 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-----GWL 176 +E++ +K DW RPL +YA +D YLL I + + + Sbjct: 349 LEKFVNFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNDLIEHSTPSNNLI 408 Query: 177 PAALDECRLMQMRRQEVVAPED-------AWRD--ITNAWQLRTRQLACLQLLADWRLRK 227 L+ + ++R E WRD + N+ Q A + + WR + Sbjct: 409 DYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLVRNSTLFSREQFAVFRAVHQWRDKI 468 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGS-LGELDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 AR D V +V+ ++ L+ +A MP + L ++ +R L+ +++KA+ + Sbjct: 469 ARFEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQVIKKAKIIG 528 Query: 287 EDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKP 346 P+ L + ++ SE +L +R I+Q W LK Sbjct: 529 ATG-PELRDVLFPLKQRTDESNPSTPKLSPKSEPD--HRSVLVARADISQF--WGATLKQ 583 Query: 347 QNNLP 351 P Sbjct: 584 PQQPP 588 >UniRef50_A6DHN3 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN3_9BACT Length = 372 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 9/373 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + I + + + + IALDTEFV T+T++P GL+Q+ + LID L I ++ Sbjct: 2 KFIDQAEEIQRVLSRALSEKDIALDTEFVWTKTFHPIPGLLQIKSAGEIHLIDLL-IENF 60 Query: 64 S--PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 LK +L + K LH+ +DL++F + + DTQ+ AF G P A + Sbjct: 61 PKEILKELLESRDVCKILHSPDQDLKLFKLFCDAEAKNIFDTQLAYAFTGAPKQVSLAKL 120 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 E + + K++ +DW RPL + Q YAA DV YL+ IT L + + +G L+ Sbjct: 121 CLEMMDIEISKTQQVSDWTKRPLKDSQLNYAAEDVRYLIEITETLREKLKENGRYDWFLE 180 Query: 182 ECRLMQM--RRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 E + + E E A++ + +L R L LQ LA +R A +R++ NF+ Sbjct: 181 ENKSISENPALYEEAQAETAYKKVKQFGRLPLRSLVYLQKLAAYRHEIAFKRNITPNFIF 240 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + L+ A Y+ G+ G + +++ H K L A+ ++ + + ++ LP ML Sbjct: 241 HQSLLFKAAMYLSSDYGQFTRNGFNEKQLQKHYKNLQAMAKEVKIIADEDLPNGMLGKEP 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 + KA + +V+E + L+ +R I +L+ K N I GWR Sbjct: 301 TGSEKALIKACAQAMDEVAERQGLDPGLIYARSHIKRLILKANKKPENLN----IQGWRK 356 Query: 360 ELMAEALHNLLQE 372 E++ + ++ + Sbjct: 357 EVLGDTFEKIMNQ 369 >UniRef50_A2R7H4 Contig An16c0130, complete genome n=16 Tax=Eurotiomycetidae RepID=A2R7H4_ASPNC Length = 782 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 138/369 (37%), Gaps = 23/369 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E ++A IA+D E +Y + L+Q+ + ++D L Sbjct: 229 TFVDTLEGVKEMLEELKAAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWRE 288 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L + DP+I K LH S D+ G + DT A P + Sbjct: 289 ELQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKR-SLKFL 347 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA-----SGWL 176 ++++ DK DW RP+ E +YA +D YLL I + E + + Sbjct: 348 LQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYDHIRNELVENSLPDNNLI 407 Query: 177 PAALDECRLMQMRRQEVVAPEDA-------WRDI--TNAWQLRTRQLACLQLLADWRLRK 227 L++ + ++ E + A W D+ N+ + Q A + + WR Sbjct: 408 DYVLEQSKKEALQVYERPVYDAATGQGPGGWYDLLSRNSVVVNREQFAVFKAVHQWRDEV 467 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLP 286 ARE D V V + L+ VA MP LG L +L ++ LL +++KA+ Sbjct: 468 AREEDEGVQCVFPKHVLFRVAHTMPLDLGTLFRTLSPVTPIVQNRAVDLLEVIKKAKDEG 527 Query: 287 ED--ALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL 344 D + A + + ++ + SR +++Q + Sbjct: 528 ADGPEWRDVYVKPTRGTPAAPATQPVDVPSPTPADEANLPT---VSRYEVSQFWGSVLES 584 Query: 345 KPQNNLPEL 353 + +P Sbjct: 585 QEPPTVPAY 593 >UniRef50_A8NTL1 3'-5' exonuclease family protein n=1 Tax=Brugia malayi RepID=A8NTL1_BRUMA Length = 847 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 117/320 (36%), Gaps = 12/320 (3%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 + T + L SL + + ++D E R++ L+Q+ + +IDP + D Sbjct: 268 YVDTLEKLRSLRDVLNKEQEFSVDLEHNAQRSFLGLTCLMQISTRQMDYIIDPFPLWNDM 327 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L DP+I K H D+ FG + DT + + +V+ Sbjct: 328 HILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTYKAMRVLNFS-KFSYQHLVQ 386 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE-----ASGWLPA 178 TLDK + DW RPLT YA +D YLL +L A+ L Sbjct: 387 TCCNHTLDKKFQKADWRLRPLTIAHKTYARSDTHYLLHCYDQLRKRLLSQENAANNLLEF 446 Query: 179 ALDECRLMQM--RRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 +E + ++ + + + L +RQ L L WR +AR D + Sbjct: 447 VYNESAQTCLTVYKKPKFESDGYEKLLVGRKPLNSRQQFALAALWKWRDERARTDDESPQ 506 Query: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP--QP 293 +V+ + +A +P + G L ++ L ++ ++ P P P Sbjct: 507 YVLPCHMMLQIAEVLPREMQGILACCSPVPVHVKQELHILHQIINTSRDQPLVKRPIYAP 566 Query: 294 MLNLMDMPGYRKAFKAIKSL 313 + + + G + ++ Sbjct: 567 NIGSLTLEGVTSQLNKMNAV 586 >UniRef50_Q7XE52 Nucleolar protein, putative, expressed n=13 Tax=Magnoliophyta RepID=Q7XE52_ORYSJ Length = 902 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 114/293 (38%), Gaps = 12/293 (4%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + +L L +++ A+D E R++ L+Q+ ++D L + Sbjct: 261 FTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLKLRK 320 Query: 63 W--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + L+ I +DP+ K +H D+ FG L DT + Sbjct: 321 YLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQM-DRNSLEH 379 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGW 175 ++ + GVT +K DW RPL + +YA D YLL I + + + + Sbjct: 380 LLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKESSDENDL 439 Query: 176 LPAALDECRLMQMRRQEV-VAPEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARERD 232 L + + ++ E + ++ I + RQL+ L + WR AR D Sbjct: 440 LLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQLSVLANIYKWRDSVARGED 499 Query: 233 LAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQT 284 + +++ + L +A+ MP + G L + S + H +++ + A Sbjct: 500 ESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLERHLGHVISTIRSAIA 552 >UniRef50_B3DN45 LD13130p (Fragment) n=14 Tax=Drosophila RepID=B3DN45_DROME Length = 930 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 114/291 (39%), Gaps = 10/291 (3%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 ++ T + L E +R P IA+D E RT+ L+Q+ + D L + D Sbjct: 303 VVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDM 362 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L +L DP K LH D+E + DT A A +++ Sbjct: 363 HILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM-ARLSLAYLLK 421 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS----GWLPAA 179 Y + +DKS DW RPL ++ +YA D +L+ + ++ + G L + Sbjct: 422 HYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQHAEPGLLGSV 481 Query: 180 LDECRLMQMRRQEVVA-PEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 + + +R ++ D+ RQL L+ + +WR AR D + Sbjct: 482 YQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARSEDESYG 541 Query: 237 FVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 +V+ + +A +P + G L +R TL +V KA+ P Sbjct: 542 YVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLKARDQP 592 >UniRef50_A5WG76 3'-5' exonuclease n=3 Tax=Psychrobacter RepID=A5WG76_PSYWF Length = 431 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 101/376 (26%), Positives = 176/376 (46%), Gaps = 8/376 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + DAL + + + +ALDTEF++ TY+P L L+Q+ G+ + LID + D Sbjct: 48 HWVADFDALEACLDDLETCDRVALDTEFIKRNTYFPILALVQINTGKAIYLIDAPKL-DL 106 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELP--QPLIDTQILAAFCGRPMSWGFASM 121 + +L + + HA EDL +F + E P + DTQI ++ + G+ Sbjct: 107 TEFWVVLEEMPLM-IWHACGEDLGIFY-LLSESPALTNVFDTQIALSYLTGQLQMGYQQA 164 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 + + V ++K+ES++DWLARPL+ Q YA DV YLL + L + G ++ Sbjct: 165 LSQELDVHVEKAESQSDWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVE 224 Query: 182 ECRLMQMRRQEVVAPE-DAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +C+L E E DA ++ QLA LQ ++ WR AR + FV++ Sbjct: 225 DCQLYAKELYESANIEDDATYLAMADFRYTPEQLAVLQAVSSWREALARATNQPKTFVLK 284 Query: 241 EEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ + + MP S+ +L + S +R +G L+ ++ +A+ L + P P + Sbjct: 285 KQAVRDLVVEMPTSIKQLTQKTTMHRSIVRLYGDELIQVINQAKALSPEEQP-PRIFPPY 343 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 + KA+ +I E + A +L ++ ++ L P LPE + GWR Sbjct: 344 RSKDKSVSKAVDQVIKQYEEQTGVPANVLMRKKWLSSLYEIVAYDLPLEQLPEGLKGWRN 403 Query: 360 ELMAEALHNLLQEYPQ 375 E + L L+ + + Sbjct: 404 EWVMSTLIPLITSHKE 419 >UniRef50_Q23S17 3'-5' exonuclease family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23S17_TETTH Length = 881 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 129/291 (44%), Gaps = 15/291 (5%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 + +D L + E+++ +A+D E R++ L+Q+ ++D + Sbjct: 246 FVDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISSRTKDYIVDVFSVWKSL 305 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L A+ D +I K LH D++ FG L DT A P S+ A +++ Sbjct: 306 HKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDTGQAARTLSMP-SYALAYLLQ 364 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET---------EASG 174 S V DK DW RPL YA +D YLL I L ++ AS Sbjct: 365 SISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYDNLRIQLVSKALQQGQNASH 424 Query: 175 WLPAALDECRLMQMRRQ-EVVAPEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARER 231 ++ + L++ R + +++ + + ++ + I + L R+ L+ L +WR + A + Sbjct: 425 FIESVLNKSRAICLKKYVKPILDDEKYHSILQNQRIILSDRKFRILKRLLEWRYKMAAKY 484 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEK 281 D FV+ + L+++ +P + E S L S + ++H +L+++++ Sbjct: 485 DENPTFVLANDILFNIVNRLPQTQKEFASSNLKLSYVCQYHANEILSIIKE 535 >UniRef50_A1U125 3'-5' exonuclease n=3 Tax=Marinobacter RepID=A1U125_MARAV Length = 383 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 110/376 (29%), Positives = 176/376 (46%), Gaps = 17/376 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + + T + L + +ALDTEF R T+YP GL+QL L+DP Sbjct: 18 RWLETPELLDQWLGGLDPGIPVALDTEFERVSTFYPIPGLVQLGADGQFWLVDPEVAEAA 77 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +A+L D S K L+A SEDLE+F + P ++D QI AA G S G+A +VE Sbjct: 78 GSFRAMLADESRPKLLYAMSEDLELFRHWLNVEPAGVLDLQIGAALAGAGFSVGYARLVE 137 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 G LDKS +R+DW++RPLT Q YA D+ +L P+ ++ A DE Sbjct: 138 TLFGEALDKSATRSDWVSRPLTPAQERYALDDIRFLEPLYGWVLANLRQRNLEHALADES 197 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 R PE + + W L Q A L+ L WR ++ R +D N V+ + Sbjct: 198 RRFANEAATQEDPEQHYLKLRGGWTLNREQQAVLRALVAWREQECRRQDRPRNRVLNDGL 257 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDAL---PQPMLNLMD 299 L ++A +P S + + G+ G ++ +G+ L+ LV+ A+ L P+P+ Sbjct: 258 LIAIAERLPSSAAVIRDVQGVPGGFVKRYGEQLVELVQAARATDNSGLELIPRPLSR--- 314 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 + +K +K ++ +E I E+LA R++I +L+ GWR Sbjct: 315 --DQQALYKKVKRYFSNAAECFDIPIEILAPRKRIEKLIQDGTLAGQT-----FFEGWRE 367 Query: 360 ELMA---EALHNLLQE 372 +++A + + LL + Sbjct: 368 DIIAPVKQDIEELLNQ 383 >UniRef50_UPI000023ED22 hypothetical protein FG06049.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023ED22 Length = 807 Score = 296 bits (759), Expect = 8e-79, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 111/302 (36%), Gaps = 22/302 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + + IA+D E R+Y + L+Q+ E ++D L Sbjct: 223 TYVDTYEGVLEMLGELMKAKEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTLQPWRH 282 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +P I K H D+ G L DT P A + Sbjct: 283 KLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAK-SLAYL 341 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA--------S 173 + ++ DK DW RPL + YA +D YLL I ++ E A Sbjct: 342 LSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAASDKTDADK 401 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQ----------LRTRQLACLQLLADW 223 + AL++ R + R E ++ + + W + Q + + L W Sbjct: 402 DLIGRALEKSREQSLSRYEHPDYDEETGEGSRGWSSYIFKNSHMAFDSEQFSVFRALWKW 461 Query: 224 RLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKA 282 R AR+ D + NFV+ + +AR P L S L L+ S R + ++++ Sbjct: 462 RDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLLPLNASLARSRFNEIWGYIKES 521 Query: 283 QT 284 + Sbjct: 522 KA 523 >UniRef50_B6DTH8 Exosome subunit Rrp6P n=1 Tax=Bodo saltans RepID=B6DTH8_9EUGL Length = 741 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 112/294 (38%), Gaps = 15/294 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + T + L +L A+ A +A+D E R++ L+QL ++D L + Sbjct: 220 TFVETVEGLDALIAALSACREVAVDLEHHDFRSFQGITCLMQLSTRSEDYIVDVLRLRSH 279 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + D +I K H ED+ FG + DT I P A V Sbjct: 280 MHRLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMFDTGIALQTLHMP--HSLAFAV 337 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------GW 175 + + GV LDK DW RP+ YA D YLL + +L + Sbjct: 338 DHFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLLYVHDRLKALLLHAEGRASVGNL 397 Query: 176 LPAALDECRLMQMRRQEVV--APEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARER 231 L + R + + R E + +R+ L QL L+++ +WR + AR+ Sbjct: 398 LVHVYQDSRRLCLTRYEKPMLDVDTTYREAMGKSLGGLSATQLEVLRVVFNWRDQAARDA 457 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQT 284 D + ++ + +A +P S E L +R L LV+K T Sbjct: 458 DESPPAIMHASAILQIASKLPTSAKEILACCAPVSLVVRRDIGHLCDLVKKTLT 511 >UniRef50_A5DAB2 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DAB2_PICGU Length = 755 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 121/313 (38%), Gaps = 29/313 (9%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + T+ L+ + + + IA+D E R+Y + L+Q+ E +ID L + D Sbjct: 226 IWVETESDLSQMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQISSREKDWIIDTLKLRDS 285 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I +P+I K H D+ G L DT + G P + A ++ Sbjct: 286 LVVLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKLGLP-RFSLAYLL 344 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--WLPAAL 180 E Y+ K DW RPL+ YA +D +LL + +L + +SG + L Sbjct: 345 ENYANFKTSKKYQLADWRMRPLSGPMLSYARSDTHFLLYVYDQLRNQLLSSGSQKMKEVL 404 Query: 181 DECRLMQMRRQEV-------------------VAPEDAWRDITNAWQLRTRQLACLQLLA 221 E R + RR E ++ + I N + L ++ L Sbjct: 405 HESRQVAKRRFEFTRFRPTSVSGSKVSCPIMAPNAKEPYSSIMNQFNLPNHTRPIVEALY 464 Query: 222 DWRLRKARERDLAVNFVVREEHLWS---VARYMPGSLGELDSLGLSGSEIRFHGKTLLAL 278 WR KA+E D +V +V+ + L + +A +P + ++R L+ L Sbjct: 465 LWRDAKAKECDESVRYVMPNQLLVNFSLLA--LPVDKETILRNPYITDQVRNSVDELVTL 522 Query: 279 VEKA-QTLPEDAL 290 + Q + + Sbjct: 523 LNSVMQQVSDSDW 535 >UniRef50_A6SCE7 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A6SCE7_BOTFB Length = 823 Score = 294 bits (753), Expect = 4e-78, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 125/330 (37%), Gaps = 27/330 (8%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E ++ IA+D E TR+Y + L+Q+ E ++D L Sbjct: 224 TFVDTYEGVLEMLEELKGATEIAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTLKPWRQ 283 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DP+I K H D+ G L DT G A + Sbjct: 284 QLQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACRRLGFAGG-SLAFL 342 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE---------- 171 +++Y DK DW RPL E YA AD +LL I L E Sbjct: 343 LKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELLDAPDVETPDA 402 Query: 172 ---ASGWLPAALDECRLMQMRRQEVVAP-------EDAWRDITNAWQ--LRTRQLACLQL 219 A+ + L + + + R E W + L + Q + + Sbjct: 403 ETPAATSMDIVLQKSKETSLLRYERQLYNAESGKGPGGWFSLIYKTPALLSSEQFSVFKA 462 Query: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLAL 278 + WR + AR+ D ++NFV+ + ++A++MP + L S + ++ LL + Sbjct: 463 VHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLSIIRPISHSVKSRTGELLEV 522 Query: 279 VEKAQTLPEDALPQPMLNLMDMPGYRKAFK 308 ++ A+ +D P+ + L P K Sbjct: 523 IKAAKENGKDG-PKSIDVLRKSPDSVATPK 551 >UniRef50_Q6FA19 Ribonuclease D, processes tRNA n=19 Tax=Acinetobacter RepID=Q6FA19_ACIAD Length = 398 Score = 293 bits (751), Expect = 7e-78, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 176/373 (47%), Gaps = 10/373 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +Q I D LA + + LDTEF++ T +P+LG+ Q+ + L+D + D Sbjct: 20 FQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTAL-D 78 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE-LPQPLIDTQILAAFCGRPMSWGFASM 121 S L S HA ED+++ + + + + DTQ+ +F G + + + Sbjct: 79 LSIFWQKLY-ASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQAA 137 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++ + ++K ++R+DWLARPL++ Q +YAA DV YLL ++ ++ + + L+ Sbjct: 138 LKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLE 197 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 +CR + + D+ ++ RQL LQ L WR + + + +F++R Sbjct: 198 DCRHLTQEIGTDTPQHLLYTDV-GNYRHSRRQLMQLQQLMVWREQLIKAINQPRSFILRN 256 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED-ALPQPMLNLMD 299 + + P + +L + + + IR HGKT+L L++ LPE+ P M + Sbjct: 257 STMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLK---FLPEEHEWPLRMAKPIR 313 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 + LI V E +I E+L ++ +N L + ++ LPE + GWR Sbjct: 314 HSSQD-VTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRY 372 Query: 360 ELMAEALHNLLQE 372 E++ L +L++ Sbjct: 373 EMLTRPLIQILKQ 385 >UniRef50_B8PGQ0 Predicted protein n=2 Tax=Postia placenta Mad-698-R RepID=B8PGQ0_POSPM Length = 882 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 125/381 (32%), Gaps = 58/381 (15%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + A +++ +R+ IA+D E+ RT+ + L+QL E ++D L + D Sbjct: 247 FTWVADSTAFSAMLNKLRSAQEIAIDLEYHSYRTFGGFVCLMQLSTREEDWVVDTLAVRD 306 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + D I K LH D+ F L DT + P A++ Sbjct: 307 EMEALNEVFTDSQIVKVLHGAESDIVWLQQDFNLYIVNLFDTYHASKVLDFP-RHSLATL 365 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE---------- 171 +E Y T DK DW RPL E YA +D +LL I L Sbjct: 366 LEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLYIYDNLRNALLDRAQSRTQSR 425 Query: 172 -----------------------ASGWLPAALDECRLMQMRRQEVVAPE------DAWRD 202 A + L +R E + W Sbjct: 426 AQSPSASAPASKPGSPLPTSGNPAHSLVRLVLSRSEETALRVYEKETYDAEGSGPGGWDT 485 Query: 203 ITNAWQ--------------LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 + W Q A + + WR R ARE D + +++ +L+ +A Sbjct: 486 LARKWNKGALIASAQEPTSGPLAMQRAVYRCVHAWRDRIAREEDESTRYILPNHYLFILA 545 Query: 249 RYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAF 307 P + L + +R G+ LL + A + P+ + Sbjct: 546 ERPPADMAALLSTFQPVPPVVRRRGRELLDAIRDA--VKRTLGPELSAGPSAAASTAQVA 603 Query: 308 KAIKSLITDVSETHKISAELL 328 +A + T S+ ++ +L Sbjct: 604 QADVAETTAESKAMQVDGHVL 624 >UniRef50_B7PZE0 Exosome component, putative n=1 Tax=Ixodes scapularis RepID=B7PZE0_IXOSC Length = 518 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 11/269 (4%) Query: 31 FVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKFLHAGSEDLEVF 89 RT+ L+Q+ ++D L + + L + +P I K LH D+ Sbjct: 40 HHSYRTFQGFTCLMQISTRSSDYVVDTLALRHELHLLNEVFANPKIIKVLHGADMDVLWL 99 Query: 90 LNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQC 149 FG L DT A G A ++ Y + DK DW RPL Sbjct: 100 QRDFGLYLVGLFDTGQAARVLGMAH-LSLAFLLRHYCHLDTDKKFQLADWRIRPLPLEMI 158 Query: 150 EYAAADVWYLLPITAKLMVETEASG-----WLPAALDECRLMQMRRQEVVAP-EDAWRDI 203 +YA D YLL + + + A G L + + + ++R E ED++ ++ Sbjct: 159 KYAREDTHYLLHVYDLMRRDLLAKGNQLNNLLHSVFQRSKQVCLKRYEKPLYTEDSYLEL 218 Query: 204 TNAWQ--LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGS-LGELDS 260 + ++QL L+ L WR R +R D + +V+ + ++ +P G + Sbjct: 219 YRKSKKAFNSKQLYALRHLYSWRDRISRLEDESTGYVLPNHMILQISEILPREQQGIIAC 278 Query: 261 LGLSGSEIRFHGKTLLALVEKAQTLPEDA 289 +R + L +++ KA+ P + Sbjct: 279 CNPCPPLVRQNLNELHSIILKARDTPLNQ 307 >UniRef50_D1ICW5 Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1ICW5_VITVI Length = 901 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 57/292 (19%), Positives = 109/292 (37%), Gaps = 14/292 (4%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 ++++ L L + A+D E + R++ L+Q+ ++D L + Sbjct: 216 FKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRI 275 Query: 63 W--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 L+ + +DP+ K +H D+ FG + DT + + Sbjct: 276 HVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVL-KLERNSLEH 334 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP--- 177 ++ Y GVT +K DW RPL YA D YLL I + + + L Sbjct: 335 LLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLMRTQLLSMAELENSN 394 Query: 178 ----AALDECRLMQMRRQEVVAPEDA---WRDITNAWQLRTRQLACLQLLADWRLRKARE 230 + M+ E D+ + +QLA + L +WR AR Sbjct: 395 ALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLAIVAGLFEWRDVVARA 454 Query: 231 RDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSE-IRFHGKTLLALVEK 281 D + +++ + L +A+ MP + +L L S + + +++++ Sbjct: 455 EDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNLGPVVSIIRH 506 >UniRef50_B0EQ49 Exosome complex exonuclease RRP6, putative n=2 Tax=Entamoeba RepID=B0EQ49_ENTDI Length = 517 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 115/297 (38%), Gaps = 5/297 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-W 63 + T + L + ++ A+D E +YY + L+Q+ +ID + + D Sbjct: 189 YVNTLELLQEMIISLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITLRDSI 248 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + L +P+I K H D+ FG ID+ A + + +++ Sbjct: 249 TLLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARAL-KLQHFSLKYLLQ 307 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 +Y V DK DW RPLT+ EYA D YLL I +L E G L L++ Sbjct: 308 KYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIIDQLRNECIDVGILEEVLNKS 367 Query: 184 RLMQMR-RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + +R + V +D + ++ Q + L R + AR D + ++ Sbjct: 368 NELCLRLFRPTVCSDDVIERVARRSWIKKTQFDTFKKLYLLRDKIARIEDESPESIINMT 427 Query: 243 HLWSVARYMPGSLGELDSLGLS--GSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 L ++ +P L +L L + H + L ++ + + L Q N Sbjct: 428 MLSNIVNELPTDLEKLRLCCLPKVPYFVEMHASEFILLTKQEHQIKLNQLQQIQTNE 484 >UniRef50_C1E3A4 Predicted protein (Fragment) n=2 Tax=Mamiellales RepID=C1E3A4_9CHLO Length = 332 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 66/297 (22%), Positives = 114/297 (38%), Gaps = 19/297 (6%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW- 63 + T +AL + + +A+D E R++ +IQ+ ++D L + Sbjct: 37 FVDTPEALEDMVAHLDKSNEMAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALELRGLI 96 Query: 64 -SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L ++ DP + K H D++ FG + DT A P S G A ++ Sbjct: 97 RDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYVVGMFDTGQAARVLELP-SKGLAYLL 155 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW------- 175 + Y V DK DW RPL+E YA D +LL + +L + +A G Sbjct: 156 DHYCSVKADKRFQLADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGDGSKPF 215 Query: 176 ---LPAALDECRLMQMRRQEVV-----APEDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 + LD R + E +R +A L +LA L WR + Sbjct: 216 RDLIRTTLDRSRDVCATLYEKPVTHPLTYHADYRKNRDAGDLDLPRLAVYAALHGWRDER 275 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQ 283 R D ++ +V+ + +AR P + L ++ + H L+ ++ +A Sbjct: 276 CRAEDESIGYVMPRALMLRLAREAPTNPRALLAVTRGDSPLVAKHSGELVDIISRAL 332 >UniRef50_Q4DSE3 Ribosomal RNA processing protein 6, putative n=4 Tax=Trypanosoma RepID=Q4DSE3_TRYCR Length = 768 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 66/293 (22%), Positives = 111/293 (37%), Gaps = 15/293 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + + L + + IA+D E +Y L+Q+ LID L + Sbjct: 269 RFVDATVDLEDVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCLKLRSS 328 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +P+I K LH ED+ FG DT I P G A V Sbjct: 329 MHLLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIALQTLHMP--HGLAFAV 386 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------GW 175 + + V LDK DW RP+ YA D +LL + +L S Sbjct: 387 DHFCQVKLDKKYQTADWRIRPIPAEMATYARQDTHFLLYVYDRLKTLLLNSEGRASIGNL 446 Query: 176 LPAALDECRLMQMRRQEVV--APEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARER 231 L L+E R + + E P+ +++ + L + Q+ + + +WR ARE Sbjct: 447 LVHVLNESRRLSLEIYEKPQLDPDASYKIALGRSLGGLSSMQMKVAREIFNWRDAIAREV 506 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQ 283 D + V+ + ++A +P S + L +R + L+ +V+ + Sbjct: 507 DDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVVRTNVTRLVQIVKDSL 559 >UniRef50_C8PX51 3'-5' exonuclease n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PX51_9GAMM Length = 403 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 6/370 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + T DAL +L + + IALDTEF++ T++P L LIQ+ G+ + LID + Sbjct: 21 HWVKTQDALFALLDDLEQVDTIALDTEFIKRDTFFPILALIQINTGKAIYLIDAPKLY-L 79 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGE-LPQPLIDTQILAAFCGRPMSWGFASMV 122 +L D LHA EDL ++ + + + DTQI F S G+ + Sbjct: 80 EEFWEVLADIPTV-VLHACGEDLGIYYLLSNLPALRNVFDTQIGLGFLTGENSLGYQKSL 138 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 +E V +DK ES++DWL RPLT Q YA DV YLLP+ + + G A+++ Sbjct: 139 QETIAVHVDKGESQSDWLQRPLTPEQESYAVDDVRYLLPMFVAIKTQLIEQGLWQYAVED 198 Query: 183 CRL-MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 C+ Q P++A ++ QLA LQ L +WR + A+ + F++R Sbjct: 199 CQSYTQEIFANFTTPDNALYLSVADYRDNREQLAMLQTLCEWREQLAKSINRPRTFILRP 258 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 + L + P S+ +L + + IR +G+ +L L++K + + A P +L L Sbjct: 259 QALREIIEKPPFSMKQLSFTSIKPNVIRMYGQEILTLIDKVRKEDDAAYPA-LLPLPYRS 317 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 K + I +T I +L ++ +++L + + P +SGWR Sbjct: 318 LSSDVQKQLDKAIKQHGQTLSIDETVLMRKKWLSELYAYAVAAEKPALSP-WLSGWRKAW 376 Query: 362 MAEALHNLLQ 371 + + +L Sbjct: 377 IMAEILPILD 386 >UniRef50_B4D6R3 3'-5' exonuclease n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6R3_9BACT Length = 352 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 144/363 (39%), Gaps = 19/363 (5%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I T +AL ++ + P I +DTE Y+ +L LIQ+ H LIDPL Sbjct: 4 LIDTAEALQAVPPLLAPHPRIPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPLAGISLQ 63 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL + +H DL + V + P+ DT I A CG + A++++ Sbjct: 64 PLFEAFAGKEL--IIHGADYDLRLLRRVGFTVTAPVFDTMIAARLCGIEE-FSLAALIKR 120 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC- 183 Y V L K+ + +W RPL+ + +YA D YLL I L E + C Sbjct: 121 YFDVALTKASQKANWARRPLSPQMADYAVKDTHYLLEIAGILEAELTRLDRMEWFRQSCD 180 Query: 184 -RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + + PE+ WR IT + LR R A L+ L WR +A+ D ++ E Sbjct: 181 KAVAASAITKERDPEEVWR-ITGSKDLRGRASAILRALWHWREAEAQAVDRPTFHILHSE 239 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP- 301 L A + E+D L G R VE A+ LPE P+ + P Sbjct: 240 QLIEAAAKLDRD-QEVDFSQLHGPRRRR----FYEAVETAKALPESEWPKIIRKPRPRPT 294 Query: 302 -GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 F+ +K+ + K+ L+A + + L + LP W+ Sbjct: 295 RDEEARFRELKTKRDAAAAELKLDPSLIAPKSMLESLAANGAEATA-RMLP-----WQRA 348 Query: 361 LMA 363 + Sbjct: 349 TLG 351 >UniRef50_D0MWN1 Exosome complex exonuclease RRP6-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWN1_PHYIN Length = 1465 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 126/328 (38%), Gaps = 23/328 (7%) Query: 1 MNYQMITTDDALASLCEAV--RAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL 58 ++Y + +++ L + +++ IA+D E R+Y L+Q+ + L+D L Sbjct: 242 VSYLWVDSEENLMQMMKSLTAAEARVIAVDLEHHSYRSYMGLTCLMQISTAQEDFLVDTL 301 Query: 59 GIT-DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 + L + DP K LH D+ G L DT A P + Sbjct: 302 ALRGKLQTLNQVFCDPEKVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARLLQYP-RFS 360 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--- 174 A M++ + + DK DW RPL + +YA D YLL I +L E +G Sbjct: 361 LAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQAGAKS 420 Query: 175 ---WLPAALDECRLMQMRRQEVVAP--EDAW---RDITN---AWQLRTRQLACLQLLADW 223 L L + ++ E P EDA + L Q + L W Sbjct: 421 RESLLFQTLQNSSKLCLQVYEKPQPTEEDALAVGEKLKGTVYLRDLSALQKRVIVALYLW 480 Query: 224 RLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALV--E 280 R R AR+ D +V +V+ L + +++P +L + IR H + ++ E Sbjct: 481 RDRVARQEDESVAYVMPNHVLMKLTKHLPVRSDDLFRVCHPVPLLIRKHALQITKMIVAE 540 Query: 281 KAQTLPED--ALPQPMLNLMDMPGYRKA 306 K + E+ P+P + P + Sbjct: 541 KTKLAAEETKTRPEPQPAVAARPTRKTW 568 >UniRef50_C9RLF5 3'-5' exonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLF5_FIBSS Length = 386 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 164/375 (43%), Gaps = 12/375 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y ++ ++++LA+L + + A+DTE Y +L LIQ+ GEH ++DPL D Sbjct: 7 YILVDSEESLANLLADLELYDMAAVDTEADSMYHYTARLCLIQITIGEHHYIVDPLCGLD 66 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +PL T H DL + +G P+ + DT + A G G A +V Sbjct: 67 LAPLFK--ARAMQTLIFHGADYDLRLLWQTYGFSPKSIFDTMLAAKILG-EQHLGLADLV 123 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 +EY G L K R DW RPL+ CEYA D +YL + A L + + +G + ++ Sbjct: 124 KEYFGDELKKENQRADWTIRPLSLDMCEYAIHDTFYLHELCAILAEKLQQAGRMNWLTEQ 183 Query: 183 CRLM-QMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 C + + R +D WR IT + L L+ L +WR ++A E D V++ Sbjct: 184 CNTLIEHARTPNAPKKDPWR-ITGSSIYSPCALNILKHLWEWREKQAEELDRPPYKVMQS 242 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTL---LALVEKAQTLPEDALPQPM--LN 296 E + ++ E+ L F G L L ++ A +PE P + Sbjct: 243 ELMLAIVNAQNSHFPEVSETFLPKLPRNFKGDRLDSFLNMLRTAVAVPECDWPMRLPKAP 302 Query: 297 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLN-WHWKLKPQNNLPELIS 355 + + A+K+ + +E KI A LLA++ Q+ L + + + L+ Sbjct: 303 PPPVIPHSDLLNALKTWRDEKAEELKIDAALLANKSQLIWLAAPGNIPWEKRYEEAHLMH 362 Query: 356 GWRGELMAEALHNLL 370 W+ L E L + L Sbjct: 363 -WQQGLWNEILRDKL 376 >UniRef50_UPI0001746047 ribonuclease D, putative n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746047 Length = 381 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 164/380 (43%), Gaps = 29/380 (7%) Query: 2 NYQMITTDDALASLCEAVR------AFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALI 55 +Y I T++ L L + + LDTE + +L LIQL ALI Sbjct: 13 DYYWIDTEEQLRGLAADLNSLITRGELTRVYLDTEADSLHHFQEKLCLIQLAANGIYALI 72 Query: 56 DPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 DPL ++D PL ++ + + + H+ DL + P L DTQ+ A G + Sbjct: 73 DPLVLSDLGPLLEVVDNAEV--WFHSADYDLTLLKRTCNWTPTHLKDTQVAARLTGH-RT 129 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW 175 +G A++VE++ GVTL KS + DW RPL + YA DV YL + M + A Sbjct: 130 FGLAALVEQHCGVTLCKSSQKEDWSLRPLPAKMQAYAVDDVRYLGRLVDIFMTDLVAKDR 189 Query: 176 LPAALDECRLMQMR--RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDL 233 + C ++ ++ ++AWR I+ + +LR LA L+ + +WR ARE+D+ Sbjct: 190 VTWFEQSCESLRRDVLSRQEKDRDEAWR-ISGSGRLRPAGLAILREVWNWRDGIAREKDV 248 Query: 234 AVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGK---TLLALVEKAQTLPEDAL 290 V+ + + ++A E ++ G + R+ G+ T A V + + + Sbjct: 249 PPFRVLNNQQMLTMAT-------EFETSGTAHPPPRWRGRWKETFEAAVTRVKKADPASW 301 Query: 291 P-QPMLNLMDMPGY-RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN 348 P +P + M R + +E + LL SR + L+ L P Sbjct: 302 PERPKKHARRMTDQDRAKIDRLCQARDLKAEGLGLETSLLGSRGLMEDLV-----LNPDG 356 Query: 349 NLPELISGWRGELMAEALHN 368 + + W+ E++ + L Sbjct: 357 EVRNKLMAWQREVLQDVLSK 376 >UniRef50_C0W1R4 Ribonuclease D n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1R4_9ACTO Length = 402 Score = 283 bits (724), Expect = 9e-75, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 151/390 (38%), Gaps = 26/390 (6%) Query: 5 MITTDDALASLCEAVRAFP-AIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 +I T L + + +A+D E Y + L+Q+ + LID + D Sbjct: 19 VIDTQVGLEKAAQLLSKSTMPVAIDVERAVGYRYSHRAYLVQIRREDVGTFLIDSGTLPD 78 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L L + LH +D+ + G L DT + A G +G A++ Sbjct: 79 LSILNEPLNNA--VWILHDADQDIASL-RMCGLEIPELFDTMLAARLLGF-QRFGLAAVC 134 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ GVTLDK+ DW RPL YAA DV L + K+ + A E Sbjct: 135 EQILGVTLDKNHQSDDWSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQE 194 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + R + E WR++ ++R R LA L+ L R R A E DL +++ Sbjct: 195 FHNILTRPTKKPDSE-PWRNLRGMGKIRSRRHLAILEELWKTRERIAAEIDLEPTRLIKN 253 Query: 242 EHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD- 299 L ++A P + + L+ L R + A + + ++ E LP+ + Sbjct: 254 RTLVALAFNPPRTQRQFLNEQELRRPGTRKYLDEWFAAINRGKSRSEADLPEFQRSYRHG 313 Query: 300 ----------MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 G ++ I VS+ I E+L R I + W+ + Sbjct: 314 EFPRATAWRSYEGAHARLVHLRDAIRKVSDKLGIDYEILIDTRIIRH-IAWYEVSYQGKD 372 Query: 350 LPELISG-----WRGELMAEALHNLLQEYP 374 L E ++ W+ EL+ + L +++ P Sbjct: 373 LLEFLTRFGARPWQLELVFKPLEKAIKQMP 402 >UniRef50_C7M0M9 3'-5' exonuclease n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0M9_ACIFD Length = 396 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 111/375 (29%), Positives = 171/375 (45%), Gaps = 18/375 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 + L L P IA+DTEF R RTYYP+L L+Q+ + LIDPL + D S Sbjct: 23 WLDRQSDLDELVGVGLGVPRIAIDTEFHRERTYYPRLALVQVAIDRRVWLIDPLRV-DLS 81 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 P+ A + HA +DLE+ G P+ + DTQ+ F G + ++++ Sbjct: 82 PIAAWF--DEVELVFHAADQDLEIIERAVGARPRRIFDTQVAGGFLGAGHA-SLGALLDR 138 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y GV++ K+E +DWL RPL Q YAA DV YL + +L+ E A G A E Sbjct: 139 YLGVSISKAERTSDWLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEMA 198 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 + RR+ + PE AW I L +A WR R A+ D+ V V+ + + Sbjct: 199 RLVERRRRDIEPELAWTRIRECRGLDPTGRRIAASVAAWRERTAQRDDVPVRTVLSDLAV 258 Query: 245 WSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM--- 300 SVA+ P SL EL S+ G G + + LL +V A+ +DA+ MD Sbjct: 259 ASVAKARPSSLTELRSVRGFDGRMAKERARELLEVVRAAR--DDDAIVARGAVRMDRALD 316 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P ++L+ V+ ++ LL SR ++ ++ L+ GWR + Sbjct: 317 PHEVPLVLTAQALVHAVALELELEPSLLGSREEVELFVS--------RGEGSLLEGWRYD 368 Query: 361 LMAEALHNLLQEYPQ 375 ++ + +L + Sbjct: 369 VVGRGIQAILAGERR 383 >UniRef50_A4IA84 Exosome subunit rrp6p homologue, putative n=3 Tax=Leishmania RepID=A4IA84_LEIIN Length = 743 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 115/299 (38%), Gaps = 15/299 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + T A+ ++ + IA+D E +Y L+Q+ E ++D L + Sbjct: 234 TFVDTSVAMQAMIAKLLLASEIAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKLRSS 293 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +PSI K LH ED+ F DT + P A V Sbjct: 294 MGALAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNFFDTGVALQTLHMP--HSLAFAV 351 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------GW 175 + + V L+K DW RPL+ YA D +LL + +L S Sbjct: 352 DHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGRASIGSL 411 Query: 176 LPAALDECRLMQMRRQEVVA--PEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARER 231 L +E + + ++ E + PE+ ++ + L Q + + +WR ARE Sbjct: 412 LVHVYNESKQLSLQIYEKPSVVPEETYKIALGRSLSGLNKVQEKVARDVFNWRDSAAREV 471 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDA 289 D + V+ + S+A +P + L + + +R + L+ LV+ A ED Sbjct: 472 DDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVVRDNVALLVDLVKDAVASGEDD 530 >UniRef50_Q8T0Z8 PM-Scl autoantigen-like protein n=1 Tax=Bombyx mori RepID=Q8T0Z8_BOMMO Length = 451 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 115/294 (39%), Gaps = 18/294 (6%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYP------QLGLIQLFDGEH-LALI 55 + I + L L E + A IA+D E R LIQ+ E +I Sbjct: 119 FTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRDLSGLYLILGITCLIQISTDEGGDFII 178 Query: 56 DPLGITD-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM 114 D L + + L + DP K H D+ FG L DT A G P Sbjct: 179 DALAVREHIHKLNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLP- 237 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS- 173 + ++ +Y GV DK+ DW RPL + +YA D YLL + + + Sbjct: 238 ALSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKN 297 Query: 174 ----GWLPAALDECRLMQM--RRQEVVAPEDAW-RDITNAWQLRTRQLACLQLLADWRLR 226 L + ++ R +EV+ E I + +Q+A L++L WR Sbjct: 298 AGQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDS 357 Query: 227 KARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALV 279 +AR+ D + +++ L S++ +P L +++ ++ + T+ ++ Sbjct: 358 QARQLDESTTYLLPNHMLLSLSENLPRELQGVNACCDPMPPFVKQNVITIHRMI 411 >UniRef50_B9XPC9 3'-5' exonuclease n=1 Tax=bacterium Ellin514 RepID=B9XPC9_9BACT Length = 372 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 154/366 (42%), Gaps = 16/366 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++I +D L +L + + P +ALDTE Y ++ L+Q+ LIDPL + Sbjct: 16 KVIDSDVTLKNLLGRLSSTPWVALDTEADSLHAYPEKVCLLQITTPLGDELIDPLSGINL 75 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL + +H DL + +P+ + DT + + G +G +V Sbjct: 76 DPLLDTFGGHEL--IMHGSDYDLRLLRKHHAFVPKAIFDTMLASRLLGHT-QFGLVHLVA 132 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Y GVTL+K + DW RPLT R YA D YL + +L + E G L + C Sbjct: 133 HYLGVTLEKGSQKADWAKRPLTPRMEAYARNDTHYLKHLADRLKSDLEVKGRLGWHQELC 192 Query: 184 RLM--QMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + + P+ WR I + +L LA L+ + WR +A + FV+R Sbjct: 193 ARLIIECSQNPEPDPDLVWR-IKGSNRLYRPALAVLREVWRWREAEAIVANRPPYFVLRH 251 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD-- 299 E L ++ S + L R TL +++ ++P + P+P+ + Sbjct: 252 ETLIDLSAAA-ASGHPVQPLLPQKFSDRRRA-TLSEAIKRGLSVPHEQQPEPLRHEARRL 309 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 R+ + ++ + I L+ASR + L + P+L++ W+ Sbjct: 310 SEADRRRVEELQKRRDARATELGIDPTLIASRATLLDLAE-----DWDRHAPDLMN-WQR 363 Query: 360 ELMAEA 365 ELM +A Sbjct: 364 ELMTQA 369 >UniRef50_Q6A8V2 Ribonuclease D n=2 Tax=Propionibacterium acnes RepID=Q6A8V2_PROAC Length = 412 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 92/397 (23%), Positives = 152/397 (38%), Gaps = 35/397 (8%) Query: 5 MITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T D+L C A+ IA+DTE Y P+ LIQL DG L+DPL + Sbjct: 17 VVNTPDSLTHTCRALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGG 76 Query: 63 ---WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 PL L LHA ++D+ G P L DT++ P Sbjct: 77 AVGLKPLAKALAGTQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNLP-RVSLG 132 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 MVE Y GVTL K S +DW RPL YAA DV L + K++ + +G A Sbjct: 133 PMVERYCGVTLLKEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 Query: 180 LDECRLM-----QMRRQEVVAPEDAWRDITNAWQLRTRQ-LACLQLLADWRLRKARERDL 233 E + + +E WR +++ + +R L L R A + D+ Sbjct: 193 RQEFAHLVEVAADLPSEEPGIDPKRWRKLSHIGDIHSRAGLQLAHDLWLARENLAHDLDI 252 Query: 234 AVNFVVREEHLWSVARYMPGSLG-----ELDSLGLSGSEIRFHGKTLLALVEKAQTL--- 285 ++R+E L + AR+ + L G + + +T + A+++ Sbjct: 253 MPGRLLRDEALVAAARHCDRTGNVDVETVLAIRGFHRGRAKKYRQTWAEAINHARSVSPT 312 Query: 286 -------PEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL 338 P +P P P + A++ + DV+ H + E L + + Sbjct: 313 KYPPLREPSSGIPHPRSWERHHPEEAARWAAVRPAVNDVAADHDVPPENLCTPTWLRHFA 372 Query: 339 NWHWKLKPQNNLPELISG-----WRGELMAEALHNLL 370 + + + G W+ E+++ L ++ Sbjct: 373 WQPPEDCSVEGVDVFLEGLGARPWQREILSGPLSAVM 409 >UniRef50_UPI0001758213 PREDICTED: similar to Rrp6 CG7292-PB n=1 Tax=Tribolium castaneum RepID=UPI0001758213 Length = 947 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 110/296 (37%), Gaps = 14/296 (4%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 I + L L E +R ++D E R++ LIQ+ + LID L + D S Sbjct: 259 IDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLIQISTEDKDYLIDALALRDKLS 318 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + +I K H +D+E + DT A P + A ++++ Sbjct: 319 ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQYP-ALSLAFLMKK 377 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-----GWLPAA 179 + VT +K DW RPL + YA D YL+ I + E L + Sbjct: 378 FCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYKMMKRELLHKTNKCDKLLRSV 437 Query: 180 LDECRLMQMRRQ-EVVAPEDAWRDITN--AWQLRTRQLACLQL---LADWRLRKARERDL 233 ++ + +R + + ED+ ++ RQ+ L+ Sbjct: 438 IERSTEVCKKRYFKPILHEDSHLELYRKCKKMFDNRQMYALKEXXXXXXXXXXXXXXXXX 497 Query: 234 AVNFVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLPED 288 + ++V+ L ++ +P + G L +R H L ++ KA+ P + Sbjct: 498 SCSYVLPNHMLLQISELLPREMQGILACCNPIPPLVRSHLLELHQIILKAREQPLE 553 >UniRef50_UPI0000D56CFF PREDICTED: similar to Rrp6 CG7292-PB n=1 Tax=Tribolium castaneum RepID=UPI0000D56CFF Length = 377 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 6/303 (1%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 I T +L L ++A+ + +D E+ Y L+Q+ + +ID + + D Sbjct: 76 IDTKTSLEELITDLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIALKDELH 134 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + +P I K H+ DL+ G L DTQI G G +++++ Sbjct: 135 ALNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMKALGY-KKLGLDALLQD 193 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y V DK+ R D+ RPL + +YA D YL+ KL E + L A LD+C Sbjct: 194 Y-HVAKDKTMQRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 252 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 V E N ++ RQL L+ L WR + A+ D V V+ + ++ Sbjct: 253 NCCKILYPKVEDEAYLSVRRNVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNM 312 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 ++ MP ++ + S ++ H ++ ++ + + + LPQ Sbjct: 313 ETLVLQMPSDSADIMQIS-QSSHVKEHLDEVMQILSEGNPV-RNTLPQRDRKPFWNKQAA 370 Query: 305 KAF 307 K F Sbjct: 371 KRF 373 >UniRef50_A9LLI8 RRP6-like protein 3 n=5 Tax=rosids RepID=A9LLI8_ARATH Length = 892 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 107/284 (37%), Gaps = 30/284 (10%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Y + T+ L L E + A+DTE R++ LIQ+ E L+D + + Sbjct: 118 SYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALH 177 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L+ + DP+I K H D+ F + DT +P A Sbjct: 178 DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQR-SLAY 236 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS------- 173 ++E GV +K R DW RPL+E YA D YLL I L E + Sbjct: 237 LLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSS 296 Query: 174 --GWLPAALDECR-----LMQMRRQEVVAPEDA-------WRDITNAWQ-----LRTRQL 214 L+ R +Q+ +E + +R + L +L Sbjct: 297 PDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEEL 356 Query: 215 ACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 ++ L WR R D + +V+ ++ + ++ P + E+ Sbjct: 357 --VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 398 >UniRef50_D2NTT8 Ribonuclease D n=2 Tax=Rothia mucilaginosa RepID=D2NTT8_9MICC Length = 449 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 153/387 (39%), Gaps = 21/387 (5%) Query: 4 QMITTDDALASLCEAVRAFP-AIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +ITT+ L E + A +A+DTE + Y + L+QL + L LIDP D Sbjct: 65 TLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAFKD 124 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L D +HA +D ++ G P L DT++ A G + V Sbjct: 125 LRIINDALADAE--WVIHAAIQDFPSL-DMLGMRPNRLFDTELGARLAGL-ERVNLGATV 180 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 EE G L K S+ DW RPL E YA DV L+ + L G L AL+E Sbjct: 181 EELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEE 240 Query: 183 CRLMQM-RRQEVVAPEDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNFVVR 240 + ++ + WR LR+ +QL L+ L R AR++D+ ++ Sbjct: 241 FEYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLP 300 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQ--------TLPEDALP 291 + + AR MP ++ + ++ G +R G + + A TLP A P Sbjct: 301 DSAIVEAARTMPRNVPAVMAIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAPP 360 Query: 292 QPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 P F ++ I ++SE I A+ L + + +L + L Sbjct: 361 PLKAWESKRPENLALFTEVRQAIDELSEELTIPAQNLITTDYVRRLCWEPPARFDEQTLR 420 Query: 352 ELI-----SGWRGELMAEALHNLLQEY 373 + + W+ L+A + + + Sbjct: 421 DALAEYGARPWQTGLVAPVIAPIFARH 447 >UniRef50_Q5KK81 PM-scl autoantigen, putative n=3 Tax=Eukaryota RepID=Q5KK81_CRYNE Length = 1016 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 62/347 (17%), Positives = 115/347 (33%), Gaps = 46/347 (13%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 ++ + T + L + E ++ IA+D E R+Y LIQ+ E ++D L + Sbjct: 309 FEFVDTPEKLHRMVEKLKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRK 368 Query: 62 --DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + DP+I K H D+ F L DT P + Sbjct: 369 EIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFDTYSACVVLEMPQR-SLS 427 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET--------- 170 ++++ Y DK R DW RPL + YA +D +LL I L Sbjct: 428 ALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSS 487 Query: 171 --------------EASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAW--------- 207 + L + ++ E + + + W Sbjct: 488 PANCGTIVLDSARPNPQEAMREVLGKSADTALKMYERDSYDIVTGRGSGGWLAAGKKWLP 547 Query: 208 --QLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL--GL 263 ++ + L DWR R ARE D + +++ L V+ + L + Sbjct: 548 KGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNNMLRDVSTA--DNTANLSRIIRRD 605 Query: 264 SGSEIRFHGKTLLALV----EKAQTLPEDALPQPMLNLMDMPGYRKA 306 + + +++ EK + + + P + M+ G ++ Sbjct: 606 RAPIAAQYIPEITSIIVAAKEKFKEITAERAANPQVQEMEKIGVKEI 652 >UniRef50_C7R4I8 3'-5' exonuclease n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R4I8_JONDD Length = 406 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 160/387 (41%), Gaps = 28/387 (7%) Query: 5 MITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T + + + R A+D E Y + LIQ+ +G LIDP + D Sbjct: 23 LVNTTVSYQAALRRLDRGHGPFAVDAERASGYRYGDRNYLIQVRREGAGTFLIDPTAVDD 82 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +S L A++ T HA +DL G P + DT++ A G A++ Sbjct: 83 FSELNAVMAAD--TWIFHAAIQDLGPL-RDQGLTPGTIFDTEVAARLLGL-DRVNLAAVT 138 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + GVTL+K S DW RPL YAA DV L + + L A +E Sbjct: 139 AHFLGVTLEKQHSHQDWSTRPLPSSWLTYAALDVELLGDLAISETDALTETRKLRWAHEE 198 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 +Q +R + D WR + ++ R+LA +Q L + R + AR +DLA + ++ + Sbjct: 199 FAYIQAQR--AIHRPDPWRRTSGIQRVTDRRRLAVVQHLWNEREKIARSKDLAPSRILSD 256 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDA----------- 289 + A +P ++G L ++ G+ R + A TLP Sbjct: 257 RGIIEAAITLPRTVGALLAIHEFGGAANRRRSHQWQRAINHALTLPSSELPPRRLPAPPK 316 Query: 290 LPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 LP + P A + + +++ TH + E + + + QLL W P + Sbjct: 317 LPPHKIWEEKNPLAATRLTAAREFLDELAATHHLPVENIIQPKVVRQLL-WDATTTPI-D 374 Query: 350 LPELISG-----WRGELMAEALHNLLQ 371 +P ++ W+ EL+A+ L ++ Sbjct: 375 VPAYLTNNQVRPWQQELVAQTLTMIID 401 >UniRef50_B6KGV1 Exosome component 10, putative n=3 Tax=Toxoplasma gondii RepID=B6KGV1_TOXGO Length = 1353 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 77/357 (21%), Positives = 121/357 (33%), Gaps = 42/357 (11%) Query: 6 ITTDDALASLCEAVR--AFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 I + L L + + A +A+D E +Y L+QL E +IDP + D Sbjct: 464 IAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALFDH 523 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I +P I K H D+ F + DT + A P A+++ Sbjct: 524 LHVLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGASLANLL 583 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL-- 180 + Y V +K DW RPLT YA +D YL I + + + L AAL Sbjct: 584 QTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSKPELGAALSP 643 Query: 181 ------------------------DECRLMQMR---RQEVVAPEDAWRDITNAW-QLRTR 212 + R + ++ AP +A + L Sbjct: 644 SAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFDAPAEAEALLKRTRAGLSPL 703 Query: 213 QLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFH 271 L WR AR D + + HL +A+ P S E ++ + +R H Sbjct: 704 SYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPTSAVEFAAAMRPAPPTLRQH 763 Query: 272 GKTLLALVEKAQTLPEDA--------LPQPMLNLMDMPGYRKAFKAIKSLITDVSET 320 L+ L++++ + E A L P++ P F K E Sbjct: 764 MPELIQLIQRSLSDSEAAQRAASCSSLLSPLVAPEASPPPSDFFDEKKRKRRSTEEE 820 >UniRef50_D0LT15 Ribonuclease D n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LT15_HALO1 Length = 400 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 161/352 (45%), Gaps = 10/352 (2%) Query: 27 LDTEFVRTRTYYPQLGLIQLFDGE----HLALIDPLGITDWSPLKAILRDPSITKFLHAG 82 D EF + +L L+Q+ G+ +ALID + + D +P+ ++ DP++ HA Sbjct: 32 FDFEFASDGRFLAELALVQVSWGDPEAPEIALIDSVAV-DPTPVLRLIGDPAVVSVAHAA 90 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 +DL + F + DTQI AAF G G+ +V+ GV LDK+ T WL R Sbjct: 91 KQDLGILAARFDIFAENFWDTQIAAAFVGMAEQIGYGKLVDALLGVQLDKASQFTKWLER 150 Query: 143 PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRD 202 PL+ Q YAA DV YL + A L + G +E L+ E A+ Sbjct: 151 PLSPAQLRYAADDVRYLPRVWAHLSQRLDELGRRAWVGEESALLARDAMPYGPAELAYHS 210 Query: 203 ITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL- 261 + A LR + L L LA WR +A +L +++V+ ++ L ++R G++ + Sbjct: 211 LKGAGALRGKALGRLAALAAWRQERALADNLPLSWVLPDKALLELSRRGARGPGDVRNAP 270 Query: 262 GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETH 321 G++G+ R + +++ ++ A P A P +L D G R + +++ + Sbjct: 271 GVTGTIARRYADAIVSALQGAGKPPAGAPPSRGPSLDD--GARLRVPVVMAMLQTRAAEA 328 Query: 322 KISAELLASRRQINQLLNWHWKLKPQNNLP--ELISGWRGELMAEALHNLLQ 371 I+A A+R L+ WH + L+ GWR +L +A L+ Sbjct: 329 GIAARFAATRADAESLVAWHAAGGDEGERDGVPLLEGWRRDLFGDAALAWLR 380 >UniRef50_D2SEB8 3'-5' exonuclease n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SEB8_9ACTO Length = 418 Score = 274 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 104/387 (26%), Positives = 157/387 (40%), Gaps = 24/387 (6%) Query: 5 MITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLGITD 62 +I T AL EA+ +A+D E Y + L+QL G LIDP+ + D Sbjct: 36 VIETSTALVEYAEALAAGSGPVAVDAERASGYRYGQRAYLVQLRRVGTGTGLIDPIPLPD 95 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S +++ + D LHA S+DL V G +P L DT++ A G P G ++V Sbjct: 96 LSVVQSAIVDAE--WVLHAASQDLPSLAEV-GLVPARLFDTELAARLAGLP-RVGLGAVV 151 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G L+K S DW RPL E YAA DV L+ + L E G A E Sbjct: 152 ESLLGYRLEKGHSAADWSTRPLPEEWLVYAALDVEVLVDLRDALAAVLEEQGKTEWARQE 211 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + D WR + LR RQL L+ L R AR RD+A V+ + Sbjct: 212 FAAI-LAAGPPAPRADPWRRTSGVHGLRSRRQLGMLRSLWQARDELARRRDIAPGRVLPD 270 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDAL---------P 291 + S + P + L L G R T + + + LPE L P Sbjct: 271 AAMVSAVQADPRTEAALLELPVFRGRANRKLVGTWFGALTRGRELPESELPLHSRPGDGP 330 Query: 292 QPMLNLMDM-PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNL 350 P+ D P +A ++ + +++ TH + E L S + +L+ + + + Sbjct: 331 PPVNRWADRDPAAATRLQAARAGLAELAATHSLPVENLLSPDLVRRLMWTPPEPRDAETV 390 Query: 351 PELISG-----WRGELMAEALHNLLQE 372 + W+ EL + L + L Sbjct: 391 AATLRAGGAREWQVELTRDLLTDALDR 417 >UniRef50_D1I5Y8 Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=3 Tax=rosids RepID=D1I5Y8_VITVI Length = 935 Score = 273 bits (698), Expect = 9e-72, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 113/287 (39%), Gaps = 28/287 (9%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Y + T+ L L + + A+DTE R++ LIQ+ L+D + + Sbjct: 112 SYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIALH 171 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L+ + +PSI K H D+ F L DT +P A Sbjct: 172 DTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSKPQK-SLAY 230 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS------- 173 ++E Y GV +K R DW RPL+ EYA D YLL I L+ E Sbjct: 231 LLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQHDSENSCC 290 Query: 174 --GWLPAALDECRL-------MQMRRQEVVAPEDA-----WRDITNAWQLRTRQ-----L 214 L L+ R + ++ E+ E A R + + ++ Sbjct: 291 PDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISRHLNGQGGISSKACDLQFQ 350 Query: 215 ACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL 261 ++ L WR AR D ++ +V+ ++ + ++A +P + E+ +L Sbjct: 351 DLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQKEICTL 397 >UniRef50_B2AKX1 Predicted CDS Pa_5_9190 n=1 Tax=Podospora anserina RepID=B2AKX1_PODAN Length = 628 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 65/291 (22%), Positives = 109/291 (37%), Gaps = 26/291 (8%) Query: 19 VRAFPAIALDT-----EFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--TDWSPLKAILR 71 V + I +DT RTY L L+Q+ E ++D L L + Sbjct: 19 VESTKPIWVDTLRLIWTHHDFRTYTGLLSLMQISTREKDWIVDTLVPWRHRLEVLNEVFA 78 Query: 72 DPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLD 131 DP I K H D+ G L DT + G A +++++ G D Sbjct: 79 DPGIVKVFHGAFMDVVWLQRDLGVYVVGLFDTHHASTVLGYGGG-SLAFLLKKFVGFEAD 137 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW--------LPAALDEC 183 K DW RPL YA AD YLL + + + A+ + + + Sbjct: 138 KRWQLADWRIRPLPAEMLYYARADTHYLLYVYDMIRNDLAAAAHTVHPDGKPIERVIAKS 197 Query: 184 RLMQMRRQEVVAPED-------AWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLA 234 + + R E A ++ W + +++ + A + L +WR + ARE D + Sbjct: 198 KKTALSRYENPAFDEETGLGDRGWYNYLARSSYVYNKEEFAVFRALWNWRDKTAREEDES 257 Query: 235 VNFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQT 284 FV++E + + R MP L S L ++ L +V++ + Sbjct: 258 TGFVMKEHVMAEIVRVMPSDKKALWSLLDGHARNLKGRLDELFGVVQEGRE 308 >UniRef50_C5X9Z8 Putative uncharacterized protein Sb02g034580 n=1 Tax=Sorghum bicolor RepID=C5X9Z8_SORBI Length = 760 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 67/281 (23%), Positives = 110/281 (39%), Gaps = 23/281 (8%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y + T+ L L + A A+DTE R++ L+Q+ LID + + D Sbjct: 13 YNWVDTEAQLEHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNDDYLIDTIALHD 72 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L+ + + SI K H D+ F + DT +P A + Sbjct: 73 VMGILRPVFANSSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACETLSKPQK-SLAYL 131 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS------GW 175 +E Y VT DK+ R DW RPLT EYA D YLL I L E A Sbjct: 132 LEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSSDK 191 Query: 176 LPAALDECR-----LMQMRRQEVVAPEDA------WRDITNAWQLRTRQLACLQLL---- 220 + + MQ+ +E+ P A L +++ + ++ L Sbjct: 192 INFFFEASHRSNMVCMQLYAKEIECPPGASSAASILSRNLQTHGLDSKKSSEVKDLVWKF 251 Query: 221 ADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL 261 WR AR D ++ +V+ ++ + ++A +P E+ ++ Sbjct: 252 CAWRDLMARMHDESLRYVLSDQAIAALAVSLPKGPTEVFAV 292 >UniRef50_A4ALP3 Ribonuclease n=4 Tax=Actinobacteria (class) RepID=A4ALP3_9ACTN Length = 418 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 155/383 (40%), Gaps = 22/383 (5%) Query: 4 QMITTDDA-LASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT 61 +I + LA++ I +D E Y + LIQ+ G L DP I Sbjct: 25 IVIDEREDYLAAVEAIAAGNGPIGIDAERASGYRYSQRAYLIQIFRRGAGTFLFDPPAIG 84 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D+S L ++ + LHA ++DL G P L DT++ A G P G ++ Sbjct: 85 DFSELNDVIANEE--WILHAATQDLTCL-REVGLYPTRLFDTELGARIAGLP-RVGLGTV 140 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE + G+ L K S DW RPL + YAA DV L+ + L +++ A Sbjct: 141 VEHFLGIHLAKEHSSADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKHDIAQQ 200 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + + R ++ + WR ++ +R + LA + L R A+E D A +V Sbjct: 201 EFDSV-LARDLIIVRAEPWRRLSGVHSVRGGKNLAVARELWVARDAYAQEVDTAPGRLVP 259 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPE--------DALP 291 + L + AR +P + +L +L SG R A ++ + D LP Sbjct: 260 DSALVAAARVLPETKRQLSALKEFSGRASRTQLDRWWAAIQTGLASTDIPSSRVVNDTLP 319 Query: 292 QPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 P + P + KA ++ + + SE I E L + + ++ ++ Sbjct: 320 PPRVWSEKNPEADRRLKAARASMMEASEEISIPIENLLTPDYLRRIAWTPPTEISVESIS 379 Query: 352 ELI-----SGWRGELMAEALHNL 369 + + W+ ++ A+++ Sbjct: 380 DALRELGARQWQLDVSAQSIAQA 402 >UniRef50_Q4P181 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P181_USTMA Length = 1027 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 65/338 (19%), Positives = 110/338 (32%), Gaps = 34/338 (10%) Query: 3 YQMITTDDALASLCEAVRA--FPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +Q ++T + L + + IA+D E RTY + L+QL +ID L Sbjct: 339 FQWVSTKQQIEQLRDHLDEPRVNEIAIDLEHHSYRTYQGIVCLMQLSTRWGDWIIDTLSD 398 Query: 61 T---DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 L + +P K LH + D+ G L DT P S G Sbjct: 399 DVRQHAELLNSSFTNPDKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHATNVLMFP-SHG 457 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 ++ Y DK DW RPL + YA +D LL I L E +G + Sbjct: 458 LNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLFIYDNLRHELMEAGGID 517 Query: 178 AALD---ECRLMQMRRQEVV------APEDAWRDITNAWQLR--------------TRQL 214 A + + + WR + W ++ Sbjct: 518 AIRQVFIRSKQVATATYAKEQWDTDGETREGWRTVWRKWGGEAALGTEHRKEVSQMKKEE 577 Query: 215 ACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGK 273 ++ L WR ARE D + +++ +L +A P + L + + + ++ Sbjct: 578 RLVRALHRWRDTVAREEDESPRYILGANNLMMLAARAPTTKQGVLACIPPNATGLKKRID 637 Query: 274 TLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIK 311 L +L+ + D R + + Sbjct: 638 ELASLIMA----EVADWQKDQQARRDESKQRLSAALLN 671 >UniRef50_A7BCR3 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BCR3_9ACTO Length = 414 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 92/390 (23%), Positives = 146/390 (37%), Gaps = 31/390 (7%) Query: 5 MITTDDALASLCEAVRAFP-AIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 +I T L + A+ IALD E + Y L+Q+ + LID + D Sbjct: 30 VIDTQKDLEAAARALSTGSAPIALDVERAQGFRYGSDPYLVQIRREDVGTFLIDTHALPD 89 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L+ + D LH +DL V G P L DT+I A G +G A++V Sbjct: 90 LSVLQPGVED---VWLLHDCLQDLPNLRQV-GLRPSTLFDTEIAARLIGL-ERFGLAAVV 144 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G+ L K +DW RPL + YAA DV L + +L + G A E Sbjct: 145 EQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGRWEWAQQE 204 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 P D WR I A ++R R LA L+ L + R AR DL+ +VR Sbjct: 205 FGYALSVTPPGPKP-DRWRSIPGAGKIRSRRGLAVLKALWETRESIARRIDLSPGRLVRN 263 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDAL---------- 290 L A P + L S+ R + + + + ED L Sbjct: 264 AALVRAASNPPRNKRALMSISEFRSPVARQYEDEWMRALASVAAMTEDELPPKRKPMQPG 323 Query: 291 --PQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHW------ 342 P+P +++ + V+ + ++ E++ Q+ + L W Sbjct: 324 SIPEPHHWNRIDEASAARLGTVRNAVASVASSLGLAPEVVL-APQVQRYLAWAPLDPARP 382 Query: 343 --KLKPQNNLPELISGWRGELMAEALHNLL 370 + + W+ +L + + + L Sbjct: 383 SGDEVEERMVNRGARDWQIDLTLDPICDAL 412 >UniRef50_Q6SGG6 Ribonuclease D, putative n=4 Tax=Bacteria RepID=Q6SGG6_9BACT Length = 358 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 148/362 (40%), Gaps = 27/362 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 +I T L + + ++A+DTEF R TYYP+L L+Q+ + ID L I D Sbjct: 13 TLIQTRPQLERYLKTINNDSSLAIDTEFKRINTYYPELCLVQIATTQFAECIDVLSINDL 72 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL L +H+ +D+E ++ +P L DTQI A+ P+ + ++ E Sbjct: 73 EPLFEKLYHNKTEWIVHSARQDIEALYHLSKRIPVSLFDTQIAASLLNYPLQISYQALTE 132 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 V LDKS +R DW RPL EYA DV YLLP KL E S + +E Sbjct: 133 ILQDVLLDKSYTRFDWTTRPLPANVVEYALDDVRYLLPNFEKLKHELTISKKIQWLDEET 192 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 R + + + E +L + L WR + A++++ +++ ++ Sbjct: 193 RFLLDQELYKPSIEQICYKTKGLSKLGKKFQDKAIKLVTWREKSAQQKNKPRKWIMSDQK 252 Query: 244 LWSVA---RYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L A + +L + S + LL P L Sbjct: 253 LLDYACGKSKLSTRSQKLFDDFVKESSVNLTLSELLT---------------PQKPLTSS 297 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +K ++ +I ++E++ + E++++ + + + + L SGWR + Sbjct: 298 EKNKK--NELQRIINSLAESYNLPPEVISTSKSLKKFIRGDLSA-------PLFSGWRAK 348 Query: 361 LM 362 L Sbjct: 349 LF 350 >UniRef50_A0LFB2 3'-5' exonuclease n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LFB2_SYNFM Length = 295 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 4/280 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I L +L + +A+DTE Y+ ++ LIQ+ E +IDPL + D S Sbjct: 6 VIEKPSELDALVRQLSTARHLAVDTESNSFYAYFDRVCLIQISSPERDYIIDPLSLKDLS 65 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + +P I K LHA S D+ F L DT I G G + ++E Sbjct: 66 VLGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDTAIACKLLGY-KQLGLSKILET 124 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 + GV+L+K R DW RPL Q +YA D YL+ + L + ++ A + Sbjct: 125 HFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIALRHMLAADLQSRELWAEACEAFE 184 Query: 185 LMQMRR-QEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 ++ E + I A L + L+ L +R ++AR RD A ++ E Sbjct: 185 KASEQQVPEKTFHPRGFLQINGARSLDAAGKSILKALYMFREKEARRRDRAPFRIMSNEA 244 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIR--FHGKTLLALVEK 281 L +A P S+ E+ + L+ ++ + Sbjct: 245 LLRLADARPDSVDEISRIKGLPRSFHDPKAASFLIEIIRQ 284 >UniRef50_A9U244 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U244_PHYPA Length = 515 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 116/295 (39%), Gaps = 19/295 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 +I+T L + R IA+D E R++ + L+Q+ ++D L + Sbjct: 223 TVISTASELKDMAMKCRLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDFIVDALALRSH 282 Query: 64 --SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 LK + D ++ K +H D+E FG + DT AA + +G A + Sbjct: 283 MGPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVLQLEGFGLAFL 342 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVW-----------YLLPITAKLMVET 170 ++ + + DK DW RPL +YA D L+ + + Sbjct: 343 MQRFLKINPDKRYQLADWRIRPLPAEMIKYAREDTHYLLYLYDLLRVVLVSMRS--TAGN 400 Query: 171 EASGWLPAALDECRLMQMRRQEV-VAPEDAWRDITNAW--QLRTRQLACLQLLADWRLRK 227 +A + R + ++ + + E ++ + + Q++ L L WR Sbjct: 401 DADDPVLQVYKRSRDICLKMYKKDILTETSYLSLYGLQDKNFNSEQMSVLAGLYAWRDNL 460 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELD-SLGLSGSEIRFHGKTLLALVEK 281 AR+ D + FV+ + L+ +A MP + L ++ S + + +L ++ + Sbjct: 461 ARKLDESTGFVLPNQLLYKLAEEMPDTARTLQIAIRGPHSVVGQYTAEVLEVIRQ 515 >UniRef50_D0YSP9 Ribonuclease D n=1 Tax=Mobiluncus mulieris 28-1 RepID=D0YSP9_9ACTO Length = 422 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 157/391 (40%), Gaps = 27/391 (6%) Query: 5 MITTDDALASLCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 ++ T ALA +CE ++ALDTE Y+ L+QL + LIDP D Sbjct: 37 VVNTPPALARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPD 96 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL A + LH + D+ G P+ L DT++ A +G S+ Sbjct: 97 LEPLGAAIG--KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNF-ERFGLGSLT 152 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G+ L+K S DW RPL + EYAA DV +L+ + L ++ +G A E Sbjct: 153 EQVLGIMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQE 212 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + P D WR + + + R LA L+ L R + +LA V+ Sbjct: 213 FEHLLYFEPPAPKP-DPWRHVPGSGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 271 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEI--RFHGKTLLALVEKAQTLPEDALPQPMLNLM- 298 L ++A +P ++S+ ++ R T A + ++ LP LP + Sbjct: 272 PALIALAVALPRGKRYMNSIEAFRNDRVGRERADTWYAALSRSYKLPVHELPSKRAPRVR 331 Query: 299 -----------DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQ 347 + P + + ++ ++ ++ + +E++ R +L P+ Sbjct: 332 GAVPDARNFAHNHPQEAERWHRLRDVVIQIAAELNVHSEVMLDSRTTRRLAWVLPDNAPE 391 Query: 348 NNLPELISG-----WRGELMAEALHNLLQEY 373 + E++ W+ E + + L L+ Sbjct: 392 PQVLEVLQASEARPWQIEHLLDGLVKALRSE 422 >UniRef50_A7HCG7 3'-5' exonuclease n=4 Tax=Anaeromyxobacter RepID=A7HCG7_ANADF Length = 296 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 85/274 (31%), Positives = 129/274 (47%), Gaps = 5/274 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 ++ +L+ L E VRA P +ALDTE Y ++ L+Q+ ++DPL + D S Sbjct: 12 LVADSSSLSRLVEEVRAEPVVALDTESNSFHVYRERICLLQVSTRAADYIVDPLAV-DPS 70 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL +L D LH D+ +G L DT A GR G +++VE Sbjct: 71 PLGEVLCD-GRETVLHGADYDVRCLRREYGWHLPRLFDTMAAARRLGR-QGLGLSALVEA 128 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC- 183 + GV L K+ R+DW RPLT Q YAA D YLL + L E + G A E Sbjct: 129 HFGVRLSKTFQRSDWGQRPLTAAQLAYAALDTHYLLALRDMLAGELDTLGASEQARREFE 188 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 R+ + +E V + +R + A +L LA L+ + R +A D V+ E+ Sbjct: 189 RIAAVVARERVFDPEGFRRLRGARELDPAGLAVLRAIYVAREERASGLDRPPFKVLGEDA 248 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLL 276 + ++AR +P EL + G++ S +R G +L Sbjct: 249 MIAIARRLPRDADELGRIPGVTPSVMRRLGDEIL 282 >UniRef50_A9RMT7 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RMT7_PHYPA Length = 824 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 72/341 (21%), Positives = 121/341 (35%), Gaps = 40/341 (11%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 + T L +L + ++ I +D E R++ + LIQ+ L+D + + D Sbjct: 68 WVQTRSQLEALVDVLKGEKEIGVDIEHHHVRSFRGFIPLIQISTYSTDYLVDAIALHDDM 127 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L I +P+I K H D F L DT G+P A +++ Sbjct: 128 HLLHPIFANPAILKIFHGADNDSLWLQRDFHIYIVNLFDTARACDVLGKPQR-SLAYLLQ 186 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS---------- 173 Y GV+ K R+DW RPL YA D YLL I + + Sbjct: 187 LYCGVSTKKIYQRSDWRVRPLPAEMEIYARTDAHYLLYIAQCMRANLVQACNTPSLLNDN 246 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDA--------WRDITNAWQ--LRTRQLACLQ----L 219 L + + + E D+ + N +R + A L+ Sbjct: 247 QLLLEVVRRSNAVCQQLYEKEGVGDSSSAVVASILGRLYNNSNSAMRGEEDAYLRRLVQK 306 Query: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALV 279 L +WR AR D ++ FV+ + L +VA+ P + + S +S E+ Sbjct: 307 LVEWRDALARAEDESLRFVMSDAALLAVAKERPLTEESILSTIISTDELSR--------- 357 Query: 280 EKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSET 320 E A+P P ++ + ++ D +E Sbjct: 358 -----ASETAVPGLQPLPSPSPVVQEHVGLLCDILWDFAED 393 >UniRef50_C2KQ41 Ribonuclease D n=2 Tax=Mobiluncus RepID=C2KQ41_9ACTO Length = 397 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 157/391 (40%), Gaps = 27/391 (6%) Query: 5 MITTDDALASLCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 ++ T ALA +CE ++ALDTE Y+ L+QL + LIDP D Sbjct: 12 VVNTPPALARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPD 71 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL A + LH + D+ G P+ L DT++ A +G S+ Sbjct: 72 LEPLGAAIG--KAEWILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNF-ERFGLGSLT 127 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G+ L+K S DW RPL + EYAA DV +L+ + L ++ +G A E Sbjct: 128 EQVLGIMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQE 187 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + P D WR + + + R LA L+ L R + +LA V+ Sbjct: 188 FEHLLYFEPPAPKP-DPWRHVPGSGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 246 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEI--RFHGKTLLALVEKAQTLPEDALPQPMLNLM- 298 L ++A +P ++S+ ++ R T A + ++ LP LP + Sbjct: 247 PALIALAVALPRGKRYMNSIEAFRNDRVGRERADTWYAALSRSYKLPVHELPSKRAPRVR 306 Query: 299 -----------DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQ 347 + P + + ++ ++ ++ + +E++ R +L P+ Sbjct: 307 GAVPDARNFAHNHPQEAERWHRLRDVVIQIAAELNVHSEVMLDSRTTRRLAWVLPDNAPE 366 Query: 348 NNLPELISG-----WRGELMAEALHNLLQEY 373 + E++ W+ E + + L L+ Sbjct: 367 PQVLEVLQASEARPWQIEHLLDGLVKALRSE 397 >UniRef50_B1ZWM0 3'-5' exonuclease n=2 Tax=Opitutaceae RepID=B1ZWM0_OPITP Length = 391 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 153/372 (41%), Gaps = 18/372 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y +I LA L A+ +ALDTE Y ++ L+Q G + L+D L Sbjct: 24 EYVLIDQPGQLAPLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVLAPL 83 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L A L + ++ +H DL + + P+ + DT + A RP G AS+ Sbjct: 84 PFEGLWARLAEKNL--IMHGSDFDLRLLHDFCRFRPKSIFDTMLAAQLINRP-RIGLASL 140 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 +E++ GV L K + +W RPLT++ +YAA DV++L + L E G + Sbjct: 141 LEDHFGVKLSKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKLGRIEWLRQ 200 Query: 182 ECRL-MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +CR ++ P++ I + +LR L L + WR + A+ D+ V Sbjct: 201 QCRAQIEAGSIGFAPPDENDWRIGRSEKLRGPGLGVLHAVWHWREQTAQRLDVPPFKVCS 260 Query: 241 EEHLWSVARYMP---GSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 + L +A+ L S+ L R +L A V LP+ Sbjct: 261 ADLLLRLAQAAENGDAEAAILASVHLGRRHDRL-LPSLTAAVHAGLARDPKTLPRRRGRD 319 Query: 298 MDM----PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL 353 + + IK ++ ++ L+A+R Q+ Q+ + + L +L Sbjct: 320 PNHVALTQAEIERLDRIKDDRDRIAAKLQLEPTLIANRSQLAQIA------RAPDRLDDL 373 Query: 354 ISGWRGELMAEA 365 + W+ EL+ + Sbjct: 374 LLPWQAELLRDQ 385 >UniRef50_UPI000185C37F ribonuclease D n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C37F Length = 433 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 81/354 (22%), Positives = 133/354 (37%), Gaps = 29/354 (8%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITDW 63 +I + LA + +A+DTE Y + L+Q LIDP D Sbjct: 31 IIDAGEQLA------KGHGWLAVDTERASAYRYDDRAFLLQFRRRGAGTFLIDP---EDG 81 Query: 64 SPLKAILRDP--SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 A+ ++T +HA DL G P +IDT++ G A++ Sbjct: 82 RKAMAVFGSSVNNLTWIIHAAHSDLPCL-AALGLYPTKVIDTELAGRLLGL-ERVNLAAL 139 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 E GV L K R DW RPL +YAA DV L+ + L L Sbjct: 140 TERLLGVGLAKGHGREDWSTRPLPADWLDYAALDVELLIELAEVLCQALTELDRLEWLEQ 199 Query: 182 ECRLMQMRRQEVVAP---EDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNF 237 EC ++ + +W+ + +LR QL + L R A++RD++ Sbjct: 200 ECERELAINRKYLDGLHVGHSWQGLKGIGKLRTPEQLHVARALWTERDEIAQQRDVSPTH 259 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQP---- 293 V+ L ++A +PG+ EL ++ R L +V +A+ P + P+P Sbjct: 260 VMGHSVLRTIAEQLPGTQRELTAIRGFPRRRRGAADAWLKVVNEARQEPRSSWPKPQKPS 319 Query: 294 -------MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNW 340 P + F+ + I +V + + L + Q +L+ W Sbjct: 320 RNEMPHFRRWAEHAPQAAEIFETTRDCIDNVCAQIHLRKDTLITSAQTRELVWW 373 >UniRef50_C8NPA1 Ribonuclease D n=9 Tax=Corynebacterium RepID=C8NPA1_COREF Length = 407 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 142/390 (36%), Gaps = 28/390 (7%) Query: 5 MITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLG--I 60 ++TT + + + A+DTE Y + LIQ+ L DP Sbjct: 15 LLTTPAQFEAAADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTLLFDPESHRP 74 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 L +L +HA + DL P L DT++ G + A+ Sbjct: 75 ELSRSLGPVLN--GQEWIIHAAATDLPSL-AWLDLHPGTLFDTELAGRLAGFEL-VNLAA 130 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MVE+ + L K DW RPL E YAA DV LL + + + G L A Sbjct: 131 MVEQIFDLHLLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAE 190 Query: 181 DECRLMQMRRQEVV-APEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFV 238 E ++ + +V AP +W D+ L R QL + + R A RDLA V Sbjct: 191 QEFEHIRTQFADVTEAPTLSWTDMKGVGTLKRPEQLVVAREMWMARDSIAAARDLAAGKV 250 Query: 239 VREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 + + + AR +P + G+L + K + ++ +A P P+P Sbjct: 251 LSNKVIVETARTLPRTFGDLARVKGFPGRNTGTVKRWMRVINRALASPRHTWPRPQPRPD 310 Query: 299 DMPGYR----------KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN 348 +P R + + I++ I D+ I E + + ++ + Sbjct: 311 GVPDRRYWSSFHPEEYEILQGIRADIDDLGAELNIPGENILQPAALRAVVWMSTNTGEVH 370 Query: 349 NLPELI--------SGWRGELMAEALHNLL 370 + L+ W+ E ++ L N L Sbjct: 371 DQDSLMGALRDYGVRPWQVEQVSPILINAL 400 >UniRef50_C5VCE9 Ribonuclease D n=2 Tax=Corynebacterium matruchotii RepID=C5VCE9_9CORY Length = 405 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 150/382 (39%), Gaps = 34/382 (8%) Query: 17 EAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALID----PLGITDWSPLKAILR 71 + A+DTE V Y+ ++ L+Q+ G LID P TD+ + +L Sbjct: 28 RLAQGTGWCAVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDF--MGRVLT 85 Query: 72 DPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLD 131 D +HA + DL P L DT++ F G A+MVE Y GV L Sbjct: 86 DTG--WVVHAATSDLPYLEQ-LRLRPAQLFDTELAGRFLGF-HRVNLAAMVEHYLGVRLR 141 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-EASGWLPAALDECRLMQMRR 190 K+ DW RP+ +YAA DV YLLP+ + E + S +EC + Sbjct: 142 KNHGGEDWSRRPIPSEWLDYAALDVEYLLPLADAMRSELTQQSPKDEWVAEECDYLTRVY 201 Query: 191 QEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVAR 249 + +W D+ +LR ++QL + L R + A+ D AV+ ++ ++ L ++A Sbjct: 202 RGYSPTPKSWEDLKGVRRLRTSKQLQVARWLWQVREKLAQASDTAVSRLLPDKTLVALAT 261 Query: 250 YMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML-------------N 296 +P ++ ++ +R + V+KA + P+P Sbjct: 262 ELPTTVPKVMKTTGYPPRLRRKARYWANQVDKALRTSRERWPEPFPIPTYRDKPPSRYTW 321 Query: 297 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL--- 353 P ++ + V+ I E + N+++ +LK + EL Sbjct: 322 SRYYPESFPTLTMVREELAHVAAQVGIPVENMIQSSDTNEIVWRSQELKEVTDATELLEL 381 Query: 354 -----ISGWRGELMAEALHNLL 370 + W+ +L ++L Sbjct: 382 LRRLQVRPWQQKLCLPIFTSIL 403 >UniRef50_A8L0K3 3'-5' exonuclease n=84 Tax=Actinomycetales RepID=A8L0K3_FRASN Length = 499 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 139/377 (36%), Gaps = 25/377 (6%) Query: 5 MITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ L E + +A D E Y + L+Q+ G LIDP+ + D Sbjct: 64 VLDDPQDLTRATERLAAGTGPVAFDAERASGYRYSQRAYLVQIRRAGAGTLLIDPIALPD 123 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S ++ + D LHA S+DL G P+ L DT++ G G +MV Sbjct: 124 LSGVQDAVGDTE--WVLHAASQDLPCL-AELGLRPKTLFDTELAGRLLGY-ERVGLGAMV 179 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G L+K S DW RPL E YAA DV L+ + +L E A + A E Sbjct: 180 ERVLGFGLEKGHSAADWSNRPLPEPWLRYAALDVELLVELRDQLESELVAQNKMAFARQE 239 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + WR + + R RQLA ++ + R R AR RD+A V+ + Sbjct: 240 FDAIA-AAPPREPRAEPWRRTSGIHRARSRRQLAAVRSMWQARDRVARTRDIAPGRVLPD 298 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPM------ 294 + P L L SG +R T + + A +PE+ LP Sbjct: 299 IAIMDAVLKAPEDAAALTRLPIFSGPRLRRSATTWMDALRAAAEMPENQLPSTAGPGGDG 358 Query: 295 -----LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 P +++ + ++E + E L ++ + Sbjct: 359 LPPQNRWAERDPVAAARLARVRAALNAIAEDQGMPVENLLEPALARRVTWTPPATRDTET 418 Query: 350 LPELISG-----WRGEL 361 + ++ W+ EL Sbjct: 419 VTAALTTGGARPWQVEL 435 >UniRef50_UPI0001BC2C11 putative ribonuclease D n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C11 Length = 384 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 150/381 (39%), Gaps = 18/381 (4%) Query: 5 MITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T +S C + IA+D E Y + L+QL L+D + D Sbjct: 11 LVDTPAEFSSACAELAQGSGPIAIDAERASGIRYDQRAFLVQLRRANAGTYLLDSEVLAD 70 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 SPL +H+ ++DL G P+ L DT++ A G +G A++ Sbjct: 71 LSPLNDAFAGAE--WVIHSVTQDLPCLQER-GMQPEVLFDTELAARMLGW-EKFGLAAVA 126 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E GV L K S DW RPL + YAA DV LLPI L + A E Sbjct: 127 ERTLGVRLAKEHSAADWSKRPLPKEWLNYAALDVEVLLPIRDILHEALIEADKWEFARQE 186 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQ-LACLQLLADWRLRKARERDLAVNFVVRE 241 + + + + WR +L++R+ +A ++ L R A E D+A + ++R+ Sbjct: 187 FEHLLDFQPKHFT--EPWRRTHGLTKLKSRKDIAKVRELWTSRDEMAAESDIAPSRILRD 244 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPM------- 294 L ++A+ S ++ + S R + L KA L + LP Sbjct: 245 RDLVALAQSRVQSSDDIMATWPKLS--RANSGRLYRAFRKATRLTTEELPARKEMHATQS 302 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 + + A+K+ + ++SE H I ++L + L + Sbjct: 303 RSPFSHTDIKDRVSALKAAMAELSEEHTIPHDVLLQPAIVKALGAQSRVNVEEFLFERGA 362 Query: 355 SGWRGELMAEALHNLLQEYPQ 375 W+ EL A L + L+ P+ Sbjct: 363 RRWQVELSAPVLRSTLESLPR 383 >UniRef50_B2UPD3 3'-5' exonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPD3_AKKM8 Length = 352 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 144/365 (39%), Gaps = 20/365 (5%) Query: 5 MITTDDALASLCEAVRAFP--AIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 MI+ + L + A P + LD E Y ++ LIQ D LIDPL I D Sbjct: 1 MISEKEELLEWRKRAAAQPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLSIED 60 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P L++ + ++H D+ +F N + LP + DTQ A G +G A++V Sbjct: 61 MGPFYNWLKETEV--WMHGADYDMSLFQNAWETLPAMIWDTQTAARLLGF-RQFGLAALV 117 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E + G+TL KS + DW RPL+ YA DV Y+L + KL G + + Sbjct: 118 EHFHGITLSKSSQKADWARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGWFEEI 177 Query: 183 CRL--MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 CR + R + + +D WR I +L + LA L+ + WR +A+ D V Sbjct: 178 CRHSMERARERHLAGHQDPWR-IQGCGKLNRKGLAALREMWTWRDAEAKTWDKPAFMVCS 236 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLM 298 L +L E ++ + ++K L E+ P + Sbjct: 237 NADLIQ----WSVALQEQRTVAPPPRFHAHRRSRFMNALQKFYLLDEEDYPCRPRIQRRQ 292 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 + + L + +E + L +R + + + + L++ W+ Sbjct: 293 HSDQFEDNLARLCKLRDEKAEELGMEGSFLITRASLEAIAE-----DREKGVSTLLN-WQ 346 Query: 359 GELMA 363 E + Sbjct: 347 KEALG 351 >UniRef50_Q3BSC1 Ribonuclease D n=20 Tax=Xanthomonadaceae RepID=Q3BSC1_XANC5 Length = 363 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 113/369 (30%), Positives = 158/369 (42%), Gaps = 11/369 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 I L +A R I LDTEF+R RTY+PQL L+Q+ G+ + LIDPL Sbjct: 3 HWIIHPSELTDRLQAARP-SRIGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGMN 61 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + LK L P I K +H+ SEDL F G LP+PL DTQI AA G G+ +V+ Sbjct: 62 AALKEWLTAPDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQKLVQ 121 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 E +G L K E+R+DW+ RPL+ Q EYAA DV YL I L G L ++ Sbjct: 122 EVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWLAEDA 181 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + A L L L WR +AR+ D ++++ E Sbjct: 182 ERLLATVEHDDGERWPHVSLRAAQFLEPAAQRRLLRLLRWRDLQARQSDRPRSWILDNEL 241 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 +AR+ P L L + L V A +P L G Sbjct: 242 ASQLARFPPADLEALLRQFDKFPKAPR---KLANAVWDALNIPLPDEEHAPLAQAATDGN 298 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 + K ++ + S + LLASRR + L+ Q + P + WR L+ Sbjct: 299 KAVLKRLQDAVAQRSRELGLPDGLLASRRHLETLME-------QRSWPAALGQWRRALLE 351 Query: 364 EALHNLLQE 372 L LL + Sbjct: 352 SQLMPLLDD 360 >UniRef50_D0WQH3 Putative ribonuclease D n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQH3_9ACTO Length = 411 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 91/386 (23%), Positives = 147/386 (38%), Gaps = 27/386 (6%) Query: 8 TDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD-WS 64 T+ + A+ A+DTE Y + ++Q+ +G LIDP+GI D Sbjct: 21 TNLDIDDAVSALGAGRGPFAIDTERAMGIRYSGRAYVVQIRREGAGTFLIDPIGIEDRLG 80 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL +L LHA +DL G P + DT++ G + V E Sbjct: 81 PLAELLATD--VWILHAADQDLPCL-RELGFNPPEIFDTEVAGILLGF-ERISLQAEVAE 136 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 G L K S DW RPL YAA DV L+ + +L A+G L +EC Sbjct: 137 VLGYGLAKEHSMADWSERPLAPELRAYAALDVELLIELRERLTAMLRAAGRLEWLHEECE 196 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 +++R + +P+ + R L L+ L R + A+ERDLA V+ + L Sbjct: 197 EIRLREPKTPSPQPWRKSARRNGMTDRRALGILESLWRSREKLAKERDLAPEKVLPSKVL 256 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRF-HGKTLLALVEKAQTLPEDALPQP---------- 293 +A P S ++ L S +R T + A +P++ LPQ Sbjct: 257 AELASRKPRSHADVARSPLLQSRMRRKDAHTWWDAISSAWAVPKEELPQRVFHESAEPFP 316 Query: 294 --MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 P +K ++S + ++ I E+L L W +P Sbjct: 317 ATRNWERANPDAAARWKVVRSTVLARADDLGIRQEILLKPAYQRALAWDGW--DDPEEIP 374 Query: 352 ELISG-----WRGELMAEALHNLLQE 372 L++ W+ + + + L + Sbjct: 375 ILLAALGARPWQIDNVGQVLVAAARR 400 >UniRef50_B5JQC7 3'-5' exonuclease domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQC7_9BACT Length = 370 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 146/372 (39%), Gaps = 15/372 (4%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + D L LC+ + IALD+E + +L L+QL + L+D D Sbjct: 6 FIYVDKQDELEDLCDHLAKQAEIALDSEADNLHHFETKLCLLQLRFDGTIYLLDVTADLD 65 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 IL + +H DL +F G + L D+ + + G G A+++ Sbjct: 66 LDRFWEILS--GLHLIMHGSDFDLRLFEEFCGFEAKSLFDSMLASQLLGI-KRIGLAALL 122 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 EE GV + K ++DW RPLT + +YAA DV YL + KLM + G Sbjct: 123 EENFGVKIPKDSQKSDWSQRPLTPKMLKYAATDVLYLHELRDKLMARIDELGRGEWLKQR 182 Query: 183 C-RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 C +++ + ++ I + +L R A + L WR ++ D V+ Sbjct: 183 CDNQIRIAKSGFPRNDENSWRIPRSDRLDERGQAAVYELWHWRQNLSKRLDRPPFKVLGN 242 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD-- 299 + + ++A + E GL R + L+ ++ + LPQ Sbjct: 243 DFIIALAEGVSEGNWEFVFEGLPQGIQRRSRQGLVDALKLGASRDVKTLPQRPPRTERRP 302 Query: 300 --MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 IK +S+ ++ L+A+R Q+ QL + +L + W Sbjct: 303 PLSQQELDRQDVIKGYRDKLSKELEMDPTLIATRSQVAQL------GRDPADLSGFLE-W 355 Query: 358 RGELMAEALHNL 369 + E++A L L Sbjct: 356 QKEILAPCLEGL 367 >UniRef50_A8QBU8 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QBU8_MALGO Length = 849 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 100/309 (32%), Gaps = 30/309 (9%) Query: 2 NYQMITTDDALASLCEAVRAF--PAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLG 59 ++ + + + + L + + IA+D E R+Y + L+Q+ ++D L Sbjct: 246 DFVWVDSAEKVRQLQKHLEEERVTEIAVDLEHHNQRSYQGIVCLMQISTRWGDWIVDTLV 305 Query: 60 IT---DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 L P LH D+ G L DT A + Sbjct: 306 DEVRESAELLNTAFTHPDKVLVLHGADHDILWLQRDLGLYVTNLFDTFQAARALQFG-AL 364 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW- 175 A ++ Y+ DK DW RPL YA +D LL + L E G Sbjct: 365 SLAFLLLRYTNFEADKRFQTADWRIRPLPREMLFYARSDTHALLYVYDCLRNELLQRGGP 424 Query: 176 --LPAALDECRLMQMRRQEVVAPEDA------WRD--ITNAWQLRT------------RQ 213 + D + + ++ W+ I L R+ Sbjct: 425 LAVKEVFDRSKPTASKVYAKEPWDERGNSRGGWKSLWIRMGGDLARASQDAPPDAPLGRE 484 Query: 214 LACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHG 272 ++ L WR + AR+ D + FV+ L +A P +L E S +R Sbjct: 485 ERIVRRLHHWRDQVARKEDESPAFVMPPRVLIQLALRPPLNLSEAKARTPPSLKFVRSRL 544 Query: 273 KTLLALVEK 281 L+ V+ Sbjct: 545 DELVKTVKD 553 >UniRef50_Q09BY7 3'-5' exonuclease, putative n=2 Tax=Cystobacterineae RepID=Q09BY7_STIAU Length = 379 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 139/370 (37%), Gaps = 11/370 (2%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILR 71 + +A+D E + +L +Q+ + L D L D S L ++ Sbjct: 8 QEAARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGVDASLLAPLMA 67 Query: 72 DPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLD 131 DP TK+ HA DL+ G + L DT A G P G A + E GV L Sbjct: 68 DPERTKYFHAAQGDLQFL-AEAGIRVRGLFDTHRAATLLGWP-KVGLADIARERLGVELP 125 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQ 191 K ++D+ RPL EY A DV YL + ++ +G L L +C M Sbjct: 126 KEHQQSDFSLRPLPPEMREYIANDVRYLCELGRQVREACRTAGILEEVLLDCDRMCEEAV 185 Query: 192 EVVAPEDAWRDITNAWQLRTRQL----ACLQLLADWRLRKARERDLAVNFVVREEHLWSV 247 ++ L QL A L RL A + ++ + ++ + + Sbjct: 186 ARPDVGADFKPKLPRSGLSPVQLTLAHAVAHALHTKRLEWAEKANVPMGRMLSNMAIGDI 245 Query: 248 ARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM---PGY 303 A +P + EL + G+ G +R HG+ LA+V + L +P D Sbjct: 246 AVKLPANPKELARAAGVRGGFVREHGEETLAIVRELLELSRKGELKPGREAKDSARDAHR 305 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 RK +A+K+ ++ + K++ ++ + L + + + R L Sbjct: 306 RKREEALKAFRSEKAAARKVTPSVVLPNALLEALATHPPRSVEELSQLPWFGEKRLGLYG 365 Query: 364 EALHNLLQEY 373 L LL + Sbjct: 366 ADLIALLAQE 375 >UniRef50_Q5PBN9 Ribonuclease D n=5 Tax=Anaplasma RepID=Q5PBN9_ANAMM Length = 401 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 95/379 (25%), Positives = 167/379 (44%), Gaps = 26/379 (6%) Query: 5 MITTDDALASLCEA-VRAFPA-IALDTEFVR-TRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ + + LA C +R P +A+DTEFVR YYP+L L+Q+ ++D L Sbjct: 6 LVCSTNELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQCVVDVLDER 65 Query: 62 -DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM-SWGFA 119 D SPL+ I D I K H +DL+ F LP+P+ DTQ + C S G++ Sbjct: 66 LDLSPLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGYS 125 Query: 120 SMVEEYSGVTLDK-SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 +VE++ GV L+K R DW RPL+E + YA DV YL + L+ A L Sbjct: 126 KLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLTW 185 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAW-QLRTRQLACLQLLADWRLRKARERDLAVNF 237 L+E + V D+ + + + +L + + + +WR + AR ++ N Sbjct: 186 FLEEMENIAEA---FVDNYDSLLEGMDFFPELGESEAIIARSIIEWREKVARLFNVNRNI 242 Query: 238 VVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLN 296 V+ + + + S E+ +SGS + +L ++E + + + Sbjct: 243 VMHSKSVLLATKDFLRSRDEEVLYRYVSGSYLDNLPFSLCDILESSAG-------RKLGV 295 Query: 297 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356 + + A+ L+ + H IS +L+AS+ ++ +L+N ++ G Sbjct: 296 YKLVDRDKPMLSALLILLNSMCREHGISQKLVASKVELVKLINKIHS--------NIMHG 347 Query: 357 WRGELMAEALHNLLQEYPQ 375 WR E + + + Sbjct: 348 WRYEFFGRKVEKFIAGETR 366 >UniRef50_C7NI77 Ribonuclease D n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NI77_KYTSD Length = 431 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 152/399 (38%), Gaps = 53/399 (13%) Query: 21 AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWSPLKAILRDPSITKFL 79 +A+D E Y L+QL G L+DP+GITD SPL L P L Sbjct: 32 GTGPVAIDAERASGHRYGNDAYLVQLRRQGAGTLLVDPMGITDMSPLAEALDGPE--WVL 89 Query: 80 HAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDW 139 HA ++DL G P+ L DT++ G P G A++VE Y +TL K S DW Sbjct: 90 HAATQDLPCL-ADLGLRPRSLFDTELGGRLVGLP-RVGLAAVVEHYLDLTLAKEHSAVDW 147 Query: 140 LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDA 199 RPL YAA DV L+ + + + E G A E + ++A Sbjct: 148 STRPLPTDWLVYAALDVEVLVEVRDAMEADLERLGRDEWARQEFDALT-SFTAKDHGDEA 206 Query: 200 WRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 WR + ++ R RQ A L+ L R ARERD+ + V+ ++ L ++A ++ Sbjct: 207 WRRTSGTHRIRRPRQAATLRELWLVRDEMARERDVTPSKVMHDDALVALATAPMVDPADM 266 Query: 259 ----------------------DSLGLSGSEIRF-------HGKTLLALVEKAQTLPEDA 289 + G + +R H V +A LPE Sbjct: 267 APVVRYALAARGAKNSRGGRPHRATGAAERRVRRAMATLQGHADQWWGAVVRAAELPEAE 326 Query: 290 LPQPMLNLMDMPGYRKAFKA----------IKSLITDVSETHKISAELLASRRQINQLLN 339 LP L + P + ++ + +++E + + E L + + ++L Sbjct: 327 LPPAKLPSVGPPPAKAWADRDPRAAARLAAARAELGELAEGYGVPVENLLTPSLLREVLW 386 Query: 340 WHWKLKPQNN---LPELISG----WRGELMAEALHNLLQ 371 + +L +G W+ EL + + Sbjct: 387 DTADREHLQAAQVDADLEAGGARPWQRELAVPVIVRAAE 425 >UniRef50_A9WRA0 Ribonuclease D n=5 Tax=Actinomycetales RepID=A9WRA0_RENSM Length = 480 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 95/382 (24%), Positives = 150/382 (39%), Gaps = 22/382 (5%) Query: 5 MITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 +I T + L A+ +D E Y + L+Q+ +G LIDP D Sbjct: 82 IINTAEGLERAARALANGSGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDPEPFDD 141 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L + LHA S+DL + G P L DT++ A G P G A++V Sbjct: 142 LKIIDDALN--GVEWILHAASQDLPCL-SELGMWPSALFDTELAARIAGLP-KVGLAAVV 197 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G L K S DW RPL E YAA DV L + +L+ EA G L A E Sbjct: 198 EQLLGFGLAKEHSAADWSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEWATQE 257 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + + D WR + QLR +QLA ++ L R A+ RD+A ++ + Sbjct: 258 FQAI-LAAGPPPPRIDPWRRTSGVHQLRDRKQLAAVRQLWLERDALAQNRDVAPGRLLPD 316 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPE--------DALPQ 292 L + AR MP ++ +L G G + L + +A+ E + P Sbjct: 317 SALVAAARAMPDTVPQLLGTPGFHGRAAQREAPRWLRSIAEAKASKELPPLHLPSSSPPP 376 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPE 352 P P F ++ + +++E + E L + + ++ +L Sbjct: 377 PRAWADKDPAAAARFATVRPRLFELAEQLNLPVENLLTPDFVRRISWRPPAEISAESLGS 436 Query: 353 LI-----SGWRGELMAEALHNL 369 + W+ EL L Sbjct: 437 ALADLGARPWQIELNTPGLLEA 458 >UniRef50_A8GWM0 Ribonuclease D n=16 Tax=Proteobacteria RepID=A8GWM0_RICB8 Length = 286 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 129/277 (46%), Gaps = 3/277 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q+I + L C + +++DTEF R TYY +L +IQ+ +ID + D Sbjct: 2 QIINSQKVLEEFCRELSTKKWLSIDTEFERRYTYYAKLSIIQVKAEGCSIIIDAINNLDL 61 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + +L D +I K HA ED E+F N+F LP + D Q+ A CG + + Sbjct: 62 NVFNKLLIDNNIIKIFHAPREDFEIFYNLFKTLPSNIFDVQVAANVCGLGSQLSYDDICY 121 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + +DK+ +++WL RP+TE YA DV YL I +L + Sbjct: 122 KLFKINIDKTHQKSNWLKRPITEDMLNYAFLDVEYLDKIYKQLNKIILDNNLTNQYQSML 181 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + V PEDAW+ + +++ Q+LA +R KA+ ++ + +E Sbjct: 182 QFLFNIKNYEVKPEDAWKKVKFRIKIKDFNTKI-QMLAAYREEKAQTINIPRKHFISDED 240 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIR--FHGKTLLAL 278 L + +Y+P + + +L L ++ + + L+ L Sbjct: 241 LMKLCKYLPLTEQDFKNLNLKSRHLQKPRYKEELIQL 277 >UniRef50_C8NU72 Ribonuclease D n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NU72_9CORY Length = 394 Score = 247 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 76/354 (21%), Positives = 128/354 (36%), Gaps = 19/354 (5%) Query: 1 MNYQMITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPL 58 M+Y+++ T D A + + A+DTE Y + LIQ+ G L P Sbjct: 1 MHYELVHTPDGFARAAKQLAAGHGPFAVDTERASAYRYDDRAFLIQIHRRGAGTFLFQPE 60 Query: 59 GITD--WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 G+ + S L + +HA EDL G P L DT + G Sbjct: 61 GLREELTSALAPAVNGED--WIIHAAPEDLPSL-AELGLHPGTLFDTALAGRIAGFEKP- 116 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 A+MV E+ GV L+K R DW L +YAA DV YL + G L Sbjct: 117 NLAAMVAEFCGVELEKGHGREDWSLPTLPREWLDYAALDVIYLPDLAEAQAELLGGLGKL 176 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTR-QLACLQLLADWRLRKARERDLAV 235 A E + E AP W + L + A + + + R A RD++ Sbjct: 177 DYAEQEFAHIVDTFAEWTAPTLTWEGLKGVNNLPSALSRAIARAVWEQRNADALRRDISP 236 Query: 236 NFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML 295 + ++ + + ++A+ P S +L ++ + ++ P Sbjct: 237 SHILPSKLIIAIAKEQPRSPADLAAMKGFPARRTGASHKWFRVLRGVYQSDPATWPDKPR 296 Query: 296 NLMDMPGYRKA----------FKAIKSLITDVSETHKISAELLASRRQINQLLN 339 N PG + ++S I + ++ + AE+L + + + Sbjct: 297 NNEGTPGKSAWQRHHPESWDYLQTMRSAIAEAADDMDLPAEVLLTPAVLRETAW 350 >UniRef50_C0VVQ6 Ribonuclease D n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVQ6_9CORY Length = 386 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 77/382 (20%), Positives = 138/382 (36%), Gaps = 25/382 (6%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGI-TD 62 ++ LA + IA+DTE TY + LIQL +G LID + D Sbjct: 13 LVDNPSQLADCAATLSPGAPIAIDTERASGYTYDDRAYLIQLRQEGIGTFLIDAEALRDD 72 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P+ A + + LHA D+ G L DT++ F G A+M Sbjct: 73 LPPVLAPAVN-ACPWVLHAAVSDIPCL-ADVGMTAPTLFDTEVAGRFLGF-DKVNLAAMT 129 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 G+ L K + +W RP+ YAA DV L+ + L E G L A E Sbjct: 130 NRILGIDLKKGHAAENWSKRPIPRSWLIYAALDVELLIELADTLTALLEREGKLAWAEAE 189 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + + E W D+ ++ Q+ + L + R A + +A V+ + Sbjct: 190 FQHIIDC--PPHHHEKTWLDVKGIRRMHGPQVQAARALFNKRELIAYRKGIAPGRVLSNK 247 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDAL---------PQP 293 L +A P + ++D++ S+ ++ ++ LP + P Sbjct: 248 LLSLLAEKYPTTAEDVDTILHHRSDPSMWAD----VIRRSLALPREKWTTLPHEDGTPAK 303 Query: 294 MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL 353 P A + + I D ++ ++ +L S + + + E+ Sbjct: 304 SAWKRLSPEAWDALHNVTAAIADHAQDLQMDPIVLVSPALVRDAVWQRVFDGDSTPVAEI 363 Query: 354 I-----SGWRGELMAEALHNLL 370 + W+ + + E + + L Sbjct: 364 LRDRGARDWQIDQVGEIIEDFL 385 >UniRef50_C7MCA5 Ribonuclease D n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCA5_BRAFD Length = 399 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 151/386 (39%), Gaps = 26/386 (6%) Query: 5 MITTDDALASLCEAVRAFPA--IALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGIT 61 +I L + CEA + P +A+D E + Y + L+QL ALIDPL T Sbjct: 20 VIDRIQPLLAWCEAAASAPEEPVAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAFT 79 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L+++L + LHA +DL G P L DT++ A G G ++ Sbjct: 80 MPATLRSLLAERE--WVLHAAGQDLPSL-AEIGLEPGGLFDTELAARLLGM-ERVGLGAV 135 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE+ G+ L K S DW RPL E YAA DV L+ + L + A Sbjct: 136 VEDTLGLRLAKEHSAADWSRRPLPEGWLTYAALDVEVLVEVRDVLRERLREACKEDWARQ 195 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + R+ +WR + LR RQLA + + R A DL+ + V++ Sbjct: 196 EFEH-ERVREHGPTRSSSWRGLHGLGGLRTPRQLAAAREMWQRRDEIAAGEDLSPHRVIK 254 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQP------- 293 + L + A+ P D +++R LP LP+ Sbjct: 255 DRDLVAGAKEAPRGREAFDRA--LPAKLRRK-DMWWQAARTGIELPPAHLPERTERSYPP 311 Query: 294 --MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 L P + ++ +++ + +E ++ E L + Q + H + ++ + Sbjct: 312 PHKLWSKKYPEVAERYQLVRAATAERAEDLEMPPENLLQPALLRQWVWEHEQAPAESEIA 371 Query: 352 ELI-----SGWRGELMAEALHNLLQE 372 + W+ E A +H L E Sbjct: 372 AQLAELGARPWQVEQSAPVIHRALTE 397 >UniRef50_C0XSM9 Ribonuclease n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XSM9_9CORY Length = 390 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 85/360 (23%), Positives = 141/360 (39%), Gaps = 22/360 (6%) Query: 1 MNYQMITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPL 58 MN++++ T A + A+DTE + Y + L+Q+ + L P Sbjct: 1 MNFELVDTPAAFRRAAAQLFHGRGPCAIDTERASSFRYDDRAFLVQVNRRDAGTFLFAPE 60 Query: 59 GITDW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 G D L ++ LHA EDL G P L DT+I A G Sbjct: 61 GHRDALREALAPVIGGTD--WILHAAGEDLPSL-AELGLHPGTLFDTEIAARLAGFERP- 116 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 A+MV E++GVTLD R DW PL + YAA DV YL + L +A+G L Sbjct: 117 NLAAMVGEFTGVTLDNGYGREDWSTIPLPLQWQAYAADDVVYLSALAEGLTEVLDAAGKL 176 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAV 235 AA E ++ R WRD+ L T R L + L D+R + R D + Sbjct: 177 EAAEQEFEHVRTRPAPAP---KTWRDLKGISSLPTGRSLHLARALWDYRDARGRATDTSP 233 Query: 236 NFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML 295 + ++ + + ++A+ P + EL + + R + A++E+A P Sbjct: 234 HTLLGSKVILNIAKNPPRTPDELGRVRGFPARRRDAIEEWYAVIERACADAPSRWPDAPR 293 Query: 296 ----------NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK 345 P + F + + ++ ++ ++ ELL + ++ + Sbjct: 294 DRDNPPSKSSWQRHHPESWQRFVSAREEVSRHADDIDVAPELLVQPALLRAVVWNGVASE 353 >UniRef50_C0W3T7 Possible ribonuclease D n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3T7_9ACTO Length = 431 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 144/363 (39%), Gaps = 22/363 (6%) Query: 7 TTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWS 64 + + L+ + + +A+D E Y LIQL +G L+DP+ D S Sbjct: 42 DSPELLSQAADCLAAGHGPVAVDAERASGFRYGQDAYLIQLRREGAGTFLVDPVTAGDMS 101 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L A L P LHA +DL + G P+ L DT++ A GR G ++VEE Sbjct: 102 ALAAALDGPE--WILHAADQDLPCL-SALGLHPRSLFDTELAARLLGR-ARVGLGAVVEE 157 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 G+ L K + DW RPL YAA DV L + L E E +G A E Sbjct: 158 TLGLRLAKDHAAADWSTRPLPRTWLVYAALDVELLADLRVALGAELEEAGKAEWARQEFD 217 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQL--RTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + R A D WR A + R LA L+ + R A++ D + V+ Sbjct: 218 Y-ERTRPPRPAKIDPWRKTPRAGRAMRSARSLAVLREVWTAREELAQQLDRTPSKVLPHS 276 Query: 243 HLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED------------A 289 + + A P S +L +L S + R + + VEKA LPED Sbjct: 277 AVVAAAVARPTSRRKLAALKEFSSRQARLNQEVWWRAVEKALELPEDQLPAMHAALAPGE 336 Query: 290 LPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 LPQP A ++ + +E ++ ELL + L + + + Sbjct: 337 LPQPRSWARHHSEAAIALDEVRGAVRQRAEQLRVPQELLLAPDTQRHLAWQIGEEEAAGH 396 Query: 350 LPE 352 +P+ Sbjct: 397 VPD 399 >UniRef50_A0EBI7 Chromosome undetermined scaffold_88, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0EBI7_PARTE Length = 676 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 102/280 (36%), Gaps = 25/280 (8%) Query: 5 MITTDDALASLCEAVRAF------PAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL 58 MIT D L L ++ IA+D E +Y LIQL +IDP Sbjct: 194 MITNADHLGELVLKIQQEVDQNGFSEIAVDLEHNHQISYLGITCLIQLSTRSQDYIIDPF 253 Query: 59 GITDW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 + L I +P I K H D++ FG L DT + M Sbjct: 254 PLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDTFHASKELQL-MQN 312 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW- 175 F ++ EY + DK+ DW RPL + +YA D YLL I ++ + + Sbjct: 313 SFQFLLSEYCKKSTDKTYQTADWTQRPLPDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKP 372 Query: 176 -----------LPAALDECR--LMQMRRQEVVAPEDAWRDI--TNAWQLRTRQLACLQLL 220 L A L + +++ ++ + + + + I ++ + + L Sbjct: 373 NDNISNIPNYYLEAVLKRSKETALKIYKKPLQDQDQSLQTILNKQDRRMEAKSFELMVRL 432 Query: 221 ADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS 260 + R + D + + L+ + P ++ EL S Sbjct: 433 LELREELGIKHDQNPRYFLPNPFLFKIVESKPTTIQELKS 472 >UniRef50_Q6NGV4 Putative ribonuclease n=1 Tax=Corynebacterium diphtheriae RepID=Q6NGV4_CORDI Length = 407 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 150/389 (38%), Gaps = 27/389 (6%) Query: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDW-- 63 T+ + + + A+DTE Y + L+Q+ +G LIDP Sbjct: 18 TSRSIYEAAYQLSQGTGPFAIDTERAGAYRYDDRAYLLQIRREGSGTVLIDPEANRRLVT 77 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 S L ++ + +HA + DL + G P + DT++ G P ASM+E Sbjct: 78 SVLGKVINNQ--PWIIHAAATDLPCL-SELGFYPSTIFDTELAGRLAGLP-RVNLASMLE 133 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 E VTL K+ DW RPL YAA DV L+P+ + + EA G L EC Sbjct: 134 ERLEVTLKKAHGAEDWSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGKLEWHKQEC 193 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + + + +W+DI +L R RQL + L + R +AR ++ +V+ ++ ++ Sbjct: 194 AHLINTSSHGLDTQRSWQDIKGVSRLTRPRQLVVAEALWELRDDEARMKNTSVSRLLPDK 253 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML------- 295 L SVA+ P + + R + + P Sbjct: 254 VLISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLESDPRTWPHTPQFDENQLP 313 Query: 296 ----NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQL---LNWHWKLKPQN 348 P F+ +K+ I + + + AE L + +L L + Q+ Sbjct: 314 SKYVWEKIHPESLDDFEEVKNSIVEKALLLNLPAENLMQPHSVKELCWQLRDVPRPIAQD 373 Query: 349 NLPELISG-----WRGELMAEALHNLLQE 372 ++ E + W+ + A + + L + Sbjct: 374 DVIECLMRLEARPWQIDNSASVITDTLNK 402 >UniRef50_B0S9S6 Ribonuclease III n=6 Tax=Leptospira RepID=B0S9S6_LEPBA Length = 406 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 95/378 (25%), Positives = 151/378 (39%), Gaps = 15/378 (3%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 NY ++ T AL +R +++DTE TYYP++ LIQ+ LIDPL IT Sbjct: 6 NYILVDTAKALDLALINLRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKIT 65 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + S L + DP+I K H+ +D++ FG DT I + S + + Sbjct: 66 NLSALGPLFEDPNILKIFHSAQDDIKALKRDFGFKFVNTADTMISSRLLSLEQSSL-SFV 124 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE Y VTL K E +++W RPL ++Q +YAA D YL I K+ + + A Sbjct: 125 VEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSLYDEAKS 184 Query: 182 ECRLMQMRRQEVVAPE----DAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 E + E + DI N L R+ L+LL +R KA+ + A Sbjct: 185 EFDFIASEDYVAKEGEGFSLGKFPDILNFTPLERRK--ILELL-RYRDEKAKRINKASFR 241 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 V + L + P ++ G + G + L+ P D + Sbjct: 242 VFNNDRLSQSVKEQPNEEKCIEWFG------KKDGTEIYKLLIAEYNDPIDTSELSKRHG 295 Query: 298 MD-MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356 D F+ K + ++ LL S +Q+ +L K + + S Sbjct: 296 EDLNEDENHKFQNAKKWRLRIMRARRMEHSLLPSNKQLITVLRAAPKNLEELKALNVFSD 355 Query: 357 WRGELMAEALHNLLQEYP 374 W+ + +L +Q P Sbjct: 356 WKVQNYGPSLLAAIQGLP 373 >UniRef50_B8MZK1 Exosome complex exonuclease Rrp6, putative n=2 Tax=Leotiomyceta RepID=B8MZK1_ASPFN Length = 434 Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 10/209 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E +++ IA+D E +Y + L+Q+ + ++D L Sbjct: 221 TFVDTLEGVKEMLEELKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWRE 280 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L + DPSI K H S D+ G + DT A P + Sbjct: 281 ELQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKR-SLKFL 339 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE-----ASGWL 176 ++++ DK DW RP+ E +YA +D YLL I L E + + Sbjct: 340 LQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIENSTPENNLI 399 Query: 177 PAALDECRLMQMRRQEVVAPEDA--WRDI 203 L++ + ++R E + A ++ + Sbjct: 400 DYVLEKSKDEALQRFERSPYDAAXXYKRM 428 >UniRef50_C8NCR6 Ribonuclease D n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCR6_9GAMM Length = 401 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 159/368 (43%), Gaps = 18/368 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLA-LIDPLGITDW 63 MI T A+ + D+EFVR R+Y P+L L+Q A L DPL Sbjct: 50 MIHTPWQYATTNTTYDPARILCYDSEFVRERSYIPKLALVQTCQPGGTAQLYDPLEGD-- 107 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 P IL P+ +HA ++DLE+ LP + DTQ A C ++ +A++VE Sbjct: 108 IPWAPILHHPAPL-VMHAAAQDLELMQLCGDALPATIRDTQTGFALCSPHLAVSYAALVE 166 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Y G+ DKS++R+DWLARPL Q +YAA DV L + L+ + + G L +E Sbjct: 167 HYLGIAPDKSQTRSDWLARPLNAAQLDYAADDVGLLARLYPLLVADLQRLGRLAWWAEES 226 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 Q+ RQ+ W + A QLR Q+L + R R A DL ++ + Sbjct: 227 AT-QLARQQQTRDAWHWYRLQGAPQLRHDDKPVAQILVEARERLAAAHDLPRRAILSDRQ 285 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD-MPG 302 + ++A+ P L + L AQ ++ P P Sbjct: 286 IITIAQKRPSVPENLAEYLAPDHLL------WQELPYLAQRFSDNTPPPAPPASPRLSPA 339 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 R+ ++ + + I D + I ++LA R + ++ KP P L++GWR Sbjct: 340 KRQHYEQLCAYIADTAAALNIHPDMLAPTRVLK-----NYVAKPDPTSP-LLTGWRAAFF 393 Query: 363 AEALHNLL 370 E L LL Sbjct: 394 REPLGKLL 401 >UniRef50_Q4UC54 3'-5' exonuclease, putative n=2 Tax=Theileria RepID=Q4UC54_THEAN Length = 790 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 114/272 (41%), Gaps = 22/272 (8%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++Y++I + ++ + ++ +++D E T TY + L+QL + +IDP I Sbjct: 475 IDYKLIDNESDFNAMLDKLKNSRILSMDVEHHDTETYRGFICLLQLSTPQENYIIDPFKI 534 Query: 61 -TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + L + DP I K +H D+ F L DT+ A P A Sbjct: 535 FGKMNKLNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDTREAAIVLNLPEQ-SLA 593 Query: 120 SMVEEYSGVTLDKSESRTDWL---------ARPLTERQCEYAAADVWYLLPITAKLMVET 170 +V++Y + L+K ++W RPL + +YA D YL+P+ L E Sbjct: 594 KLVQKYFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDEI 653 Query: 171 --EASGWLP--AALDECRLMQMRRQEVVAPE--DAWRDITNAWQLRTRQL-----ACLQL 219 + G + ++ R +++ PE ++ I+ +++ +L L Sbjct: 654 LSKEDGRVKIIQVMNNGRETCLKQYVDRGPEIYKKFKSISKRHKIKIPELDFVSYNLLLN 713 Query: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYM 251 + +R AR+ D + ++R+ + + + M Sbjct: 714 IIAFRNFLARKLDKSEKLIIRDYQIALLIKRM 745 >UniRef50_C5KIT4 Ribonuclease D, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KIT4_9ALVE Length = 350 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 26/281 (9%) Query: 34 TRTYYPQLGLIQLFDGEHLALIDPLGIT---DWSPLKAILRDPSITKFLHAGSEDLEVFL 90 ++Y LIQ+ + ++D L I DP I K LH D++ Sbjct: 1 MQSYRGFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQ 60 Query: 91 NVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCE 150 + DT A + ++++ Y G DK+ DW RPL+ER + Sbjct: 61 RDLSAYLCNMFDTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQ 120 Query: 151 YAAADVWYLLPITAKLMVETEASG--------------WLPAALDECRLMQMRRQEVVAP 196 YA DV YLL I ++ + SG + ++ + ++ + Sbjct: 121 YARDDVHYLLYIYDRMRAQLLCSGGGVDDGKVTAYGRKMYKSTINRSCDVALKTYKDADS 180 Query: 197 EDAWRDI----TNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 + I L L L WR + R+RD+ N ++ + +A P Sbjct: 181 DFMEHAITLSCKTNTPLSLVGRPMLAALMHWRDKLGRQRDVFPNSILTDRLALRIAMDEP 240 Query: 253 GSLGELDSL-----GLSGSEIRFHGKTLLALVEKAQTLPED 288 + +L G ++R +LA+++ A T P+ Sbjct: 241 VTREQLLRALGGGSGGVARQVRDRADEVLAVLQYAATHPKS 281 >UniRef50_C4JWD7 Putative uncharacterized protein n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JWD7_UNCRE Length = 635 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 77/201 (38%), Gaps = 8/201 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + ++ + ++ I +D E T +YY + L+Q+ + ++D L Sbjct: 228 TFVNTMEGVQAMLKELKCAKEIGIDLEHHDTHSYYGLVCLMQISTRDKDWIVDTLLPWRE 287 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L + +P I K LH S D+ G L DT AA P + Sbjct: 288 ELQILNEVFANPQIVKVLHGSSMDVIWLQRDLGLYLVGLFDTYHAAAALHYPKK-SLKFL 346 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA-----SGWL 176 ++++ +K DW RPL +YA +D YLL I L E + Sbjct: 347 LDKFVNFQAEKKYQIADWRVRPLLPGMFDYARSDTHYLLYIYDHLRNELIERSTPGENLI 406 Query: 177 PAALDECRLMQMRRQEVVAPE 197 + + ++R E + Sbjct: 407 DYVQENSKEEALQRYERPVYD 427 >UniRef50_Q2LWK2 Ribonuclease D n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWK2_SYNAS Length = 339 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 121/282 (42%), Gaps = 5/282 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ + ++ + E + + I+LDTE+ + +L L+Q+ + + DP Sbjct: 55 SWMWVDSEAKVEEAREDLDSSSLISLDTEYDSMHYFREKLCLVQVRASKRTYVFDPFNGI 114 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L+ DP + K HAG D+ + +G + + DT A G +S+ Sbjct: 115 DLQFLRPYFADPRLLKVTHAGDNDIRILKRDYGFEFRNIFDTHRAAHMLG-SQYLALSSI 173 Query: 122 VEEYSGVTLD--KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +E+Y GV ++ K R+ W ARPL+E Q YA D YL + L + G A Sbjct: 174 IEQYLGVEIEKTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNEKLSLKGMQERA 233 Query: 180 LDECRLMQMRR-QEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 + +E R I+ L L+ L WR KAR+ + A+ + Sbjct: 234 RKVFENVAAVSWREKTLDLLGHRRISGYASLTADSKGRLKKLYRWRFHKARQTNRAMFLI 293 Query: 239 VREEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALV 279 + + L S++ S+ EL S G LS + +G L+ ++ Sbjct: 294 LPDSALLSLSEGNWQSVEELRSAGILSEGKTDLYGSELMKVL 335 >UniRef50_A5EXN2 Ribonuclease D n=2 Tax=Dichelobacter nodosus RepID=A5EXN2_DICNV Length = 355 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 148/367 (40%), Gaps = 19/367 (5%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG--EHLALIDPL 58 M YQ T L E + + D+EFVR R YYP+L L+Q+ + LID Sbjct: 1 MTYQ---TKWQLTDHLEQLDPERIVVYDSEFVRERHYYPKLSLVQIMQPAWQKAQLIDMQ 57 Query: 59 GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 S + + + + +HA S+DLE+ LP DTQI + + + Sbjct: 58 SELCCSVWQQLAQQRAPV-VIHAASQDLELMHLHGQLLPNMFRDTQIGFSLISPHKAISY 116 Query: 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 V+ Y G+ LDKSE+R+DWLARPLT QC+YAA DV LL L + + + Sbjct: 117 LGFVQHYLGIDLDKSETRSDWLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHW 176 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNA-WQLRTRQLACLQLLADWRLRKARERDLAVNF 237 +EC+ + + P W + A ++R + L R A + DL Sbjct: 177 WQEECQNLLHEQYHHKEPYH-WFKLRGAPQKIRKIHQNTAEALVQLRETVAEKYDLPRRK 235 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 ++ +E + +A P + L L +E F + +A E + + P Sbjct: 236 ILSDEKIIEIALAQPQKFDD--CLALLPAEHYFLAEENIA--EHFEQIRTQTPPAQPRAA 291 Query: 298 MDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 R + DV+ I AE LA+ Q+ + L GW Sbjct: 292 RLNKRQRNILTQLMQFTDDVANALNIHAETLATPNQLRSWIL-------NQEKSALNHGW 344 Query: 358 RGELMAE 364 R + AE Sbjct: 345 RQAIFAE 351 >UniRef50_A7AVN6 Exosome component 10, putative n=1 Tax=Babesia bovis RepID=A7AVN6_BABBO Length = 879 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 102/268 (38%), Gaps = 22/268 (8%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 +++ T + L S+ ++ +A+D E T++Y + L+Q+ + +IDP I D Sbjct: 317 KLVQTLEELESMITLLKKCSIVAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIFDE 376 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + DP I K +H D+ FG L DT A +S+V Sbjct: 377 MWRLNDVTTDPRILKVMHGAESDILWLQRDFGVYVVNLFDTLKAADVLCLSCGHSLSSLV 436 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS--------- 173 + G+ LDKS DW RP+ YA AD YLL + + L Sbjct: 437 RHFLGIHLDKSYQLADWRIRPIPRDMLTYATADTHYLLDLYSALKNTALEQDLKYNIPGM 496 Query: 174 -----GWLPAALDECRLMQMRRQ------EVVAPEDAWRDITN-AWQLRTRQLACLQLLA 221 + + + + +R+ E+ A R ++ + L + L Sbjct: 497 VGCFDNHIWRIMLASKKVCLRQYRDPVFNEIPRAFQALRKNRQCPSKVDSLSLNMMLNLI 556 Query: 222 DWRLRKARERDLAVNFVVREEHLWSVAR 249 +R AR D + +F+ + VA Sbjct: 557 SFRNYAARVLDESDSFLFPDYAAVIVAM 584 >UniRef50_B3DSL7 Ribonuclease D n=17 Tax=Bifidobacterium RepID=B3DSL7_BIFLD Length = 433 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 93/413 (22%), Positives = 159/413 (38%), Gaps = 53/413 (12%) Query: 7 TTDDALASLCEAVRAF-PAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT--- 61 +T D +C+A+ ++A D E Y + LIQ +G +AL+DP+ +T Sbjct: 24 STLDGYHRVCDAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAG 83 Query: 62 -DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 DW+ + D T LH DL F G P+ L DT+I A G +G A+ Sbjct: 84 ADWNEFNDAVGDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGL-HRFGLAA 139 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + E Y G+TL K S DW RPL YAA DV L+ + + + +A+G A Sbjct: 140 VTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199 Query: 181 DECRLMQMRRQEVVAPED-AWRDITNAWQL--RTRQLACLQLLADWRLRKARERDLAVNF 237 +E + P W I+ QL R LA + L + R R AR+ D+A + Sbjct: 200 EEFSHALVAGLAPRKPHPIPWLRISRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSL 259 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHG--------------------KTLLA 277 ++ + + A P + + +L +R H K Sbjct: 260 LLADSSIIEAATNKPHNAAQFRALRSLNERVRIHTGTEQDKMFERYAPIQRAVKPKVWKQ 319 Query: 278 LVEKAQTLPEDALP-----------------QPMLNLMDMPGYRKAFKAIKSLITDVSET 320 +++A L P L P + ++ +I ++E Sbjct: 320 AIDRAIALKPTQWPTMPAPEQDENGVVNAPRSMRLWQQRHPERYDRLQRVRRVINRIAED 379 Query: 321 HKISAELLASRRQINQLLNWHWKLKPQNNLPELISG---WRGELMAEALHNLL 370 + AE++ + + L ++ + G W+ +L+A ++ ++ Sbjct: 380 TRTPAEMIIKPQILRNLCWVEDPVEVDVETFLVEQGARNWQVKLIAPSVSGVI 432 >UniRef50_C4LIZ8 Ribonuclease D n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIZ8_CORK4 Length = 462 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 86/414 (20%), Positives = 152/414 (36%), Gaps = 49/414 (11%) Query: 4 QMITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT 61 +I+T D L + + +A+DTE Y + L+QL G L L+D Sbjct: 56 SLISTVDELKNAARVLANGHGPLAVDTERASAYRYGDRAFLLQLKRAGSGLFLVDAEACR 115 Query: 62 -DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D PL ++ +T +H+ DL L G P L DT++ G Sbjct: 116 SDMGPLAPVVN--RLTWIIHSARTDLPALL-DMGLTPHRLCDTELGGCIAGL-KKVNLGD 171 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MV+ G L K +W RPL + +YAA DV LL ++ + Sbjct: 172 MVDGLVGYRLAKEHGHENWSRRPLPDEWLDYAALDVECLLELSTTVAGLLSELDRFAWWA 231 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVV 239 +EC ++ + + L Q L+ R R+AR D + + V+ Sbjct: 232 EECEYIRTSTLADAPSVEPSLRVKGLNNLSTPAQRELAFTLSRERDRRARAVDRSPHRVL 291 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQ---TLPEDALPQPMLN 296 L ++AR P + E+ S + ++ ++++ Q T + P+P Sbjct: 292 SNSDLIAIARKNPRTFQEMMDAAHFRSM--RNARSWWSIIQGEQDKTTASSSSTPRPHCA 349 Query: 297 LMDMPG---------------------------YRKAFKAIKSLITDVSETHKISAELLA 329 D G + + I VSE IS E++ Sbjct: 350 TDDDRGPSRHQGRHSDTHYAGGRRFPNSDRGQKAEELYSLCSEAINVVSEQTGISHEVII 409 Query: 330 SRRQINQLLNWHWKLKPQNNLPEL--------ISGWRGELMAEALHNLLQEYPQ 375 + QI +L+ WH+ +PQ + ++ + W+ +++ N L ++ + Sbjct: 410 TP-QIVRLMAWHFSSEPQAHATDIDMFFTRHGVRRWQRRIVSPVCANALGDHNR 462 >UniRef50_UPI0001B4D324 ribonuclease D n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4D324 Length = 430 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 104/234 (44%), Gaps = 8/234 (3%) Query: 5 MITTDDALASLCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 MI + ALA + A +A+D E Y + L+QL +G ALIDP+ D Sbjct: 1 MIADEAALARVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVACPD 60 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L L + LHA ++DL G +P L DT++ G P G +MV Sbjct: 61 LSALGEALS--GVEWVLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFP-RVGLGAMV 116 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G L+K S DW RPL E YAA DV L+ + L E + G L A E Sbjct: 117 EGVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQE 176 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAV 235 + +D WR + ++ R RQLA ++ L R R A+ RD++ Sbjct: 177 FDAIASA-PPPEPRKDPWRRTSGMHKVRRRRQLAVVRELWQTRDRIAQRRDVSP 229 >UniRef50_Q83GB8 Ribonuclease D n=2 Tax=Tropheryma whipplei RepID=Q83GB8_TROWT Length = 391 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 72/378 (19%), Positives = 143/378 (37%), Gaps = 16/378 (4%) Query: 3 YQMITTDDALASLCEAVR-AFPAIALDTEFVRTRTY-YPQLGLIQLFDG-EHLALIDPLG 59 + +I T+ E +R F A+DTE Y L+QL+ + D Sbjct: 16 HSLIETNRQYEEALEGLRSGFGPFAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSK 75 Query: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 I + S L ++ + +HA D++ V G L DT+I P + Sbjct: 76 IDNLSKLGDLIGSEEV--VIHAAINDIKSLKRV-GIHITNLFDTEIACRLLNIP-KVNLS 131 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 + E++ V L K S +W ARPL ++ EYA DV +LL ++ L A L A Sbjct: 132 YVTEKFINVKLRKEYSTVNWSARPLNKKYLEYAEGDVKHLLDLSQALKTALRAENKLEIA 191 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +E + M + + + Q A + L R AR +D+ ++ Sbjct: 192 KEEFSHVFMVVKHQSEIDKLDKFCHGLE--DDMQRAVAKNLWKARDEIARSKDIFTPRIL 249 Query: 240 REEHLWSVARYMPGSLGELDSLGL--SGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 + + +A+ +P +L L +L + + + +A+ ++ Q + Sbjct: 250 SNKAIRILAKQVPENLEILKTLLKKDKRPFRKQYINLWHNAISRARVQCRNSESQIQRKV 309 Query: 298 MDMPGY--RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWK--LKPQNNLPEL 353 + ++ K++ +E + E L + + ++ + L ++ Sbjct: 310 ITSEKQYPKERMDLAKAISQSCAEKINVPLENLITTHTLKSVIATDISSLCEMGGVLRKI 369 Query: 354 -ISGWRGELMAEALHNLL 370 + W+ + + + L + L Sbjct: 370 GLRDWQIKALQQPLFDGL 387 >UniRef50_B6AIJ4 Exosome component 10, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIJ4_9CRYT Length = 1029 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 17/188 (9%) Query: 4 QMITTDDALASLCEAVRAFPAI----------------ALDTEFVRTRTYYPQLGLIQLF 47 I D L S+ + + A+D E +T+ + LIQ+ Sbjct: 364 IYIDDLDGLNSMIIDINNQLELQYSESSEYSSKDPFVLAIDLEHHSMQTFRGFVCLIQMS 423 Query: 48 DGEHLALIDPLGI-TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL 106 +IDP + + S L + +P I K H D+ F + DT Sbjct: 424 TRTCDYIIDPFPLFEELSRLNELTTNPRILKLFHGSDYDIIWLQRDFSVYVVNMFDTGQA 483 Query: 107 AAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 A P + +++ Y V +K +DW RPL + EYA +D YL I + Sbjct: 484 ARVLNTPGGYSLGNLLNLYCSVEANKQYQLSDWRERPLPQHLIEYARSDTHYLPYIYDIM 543 Query: 167 MVETEASG 174 + G Sbjct: 544 KNQLLLLG 551 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLAL 278 L WR AR D++ ++V+++ L + + P + +L + + ++I+ H TLL L Sbjct: 672 LILWRETVARLYDISNSYVLKDGILQRLIQKQPLNWNDLIATFPNNPAQIKRHSDTLLKL 731 Query: 279 V 279 + Sbjct: 732 I 732 >UniRef50_A9V721 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V721_MONBE Length = 471 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 88/363 (24%), Positives = 150/363 (41%), Gaps = 35/363 (9%) Query: 29 TEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT--DWSPLKAILRDPSITKFLHAGSEDL 86 TEFV Y P+L ++Q+ LA +D T L +L I LH+G DL Sbjct: 101 TEFVHFPMYRPKLEVLQIGTETTLAAVDCAAYTKAQLKELTRVLAQKEI--ILHSGQTDL 158 Query: 87 EVFLNVFGELPQPLIDTQ---------------ILAAFCGRPMSWGFASMVEEYS-GVTL 130 ++ V + + DTQ + A G + G A +V V + Sbjct: 159 DLLTEVNEAPLERVFDTQLAYLINATLFIRNPQVAANLLGIRNTIGLADLVTHMFPEVKM 218 Query: 131 DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRR 190 DK ++ +DW RPL + Q YA +DV +L+ + +L A G ++ R + R Sbjct: 219 DKGQALSDWRVRPLNDEQLLYAISDVEHLIEMRHRLQDALSARGVEAWFQEDMRTLLTPR 278 Query: 191 QEVVAPEDAWRDITNAWQLR--TRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 A ED W D ++R A L+ L WR + AR R++A VVR++ L S+A Sbjct: 279 -PTPADEDLWLDFRRLNKVRELPTARAILRALVAWREQTARARNVATPIVVRDDVLLSIA 337 Query: 249 RYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAF 307 P + ++ + G+ I+ + +L LV++A LP + + Sbjct: 338 IAQPSTTEQIMTFQGVKMPFIKHNASDILNLVQRAAEEEAPELPPRAIFTNEPVKDDVIV 397 Query: 308 KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI-SGWRGELMAEAL 366 ++ + + +S + L + ++ + LP ++ GWR EL+ L Sbjct: 398 ALTRAFLASKALQMGMSPDALLT-NDFSRFMVG---------LPSVLDQGWRRELLHAEL 447 Query: 367 HNL 369 + Sbjct: 448 EQI 450 >UniRef50_B3E046 Ribonuclease D n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E046_METI4 Length = 324 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 74/322 (22%), Positives = 124/322 (38%), Gaps = 7/322 (2%) Query: 44 IQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDT 103 + L G+HLA++D L D S L IL H DL++ P+ + DT Sbjct: 2 VSLCQGQHLAVVDCLK-DDLSALWDILSRSE--WICHGMDYDLKMLRKAGCPQPRTIFDT 58 Query: 104 QILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPIT 163 I A CG + G+A +V + V L K + DW RPL Y A DV YL + Sbjct: 59 HIAAKLCGF-EAVGYARLVSLFFQVKLTKEHQKADWSRRPLPPSLINYTAKDVLYLEKLK 117 Query: 164 AKLMVETEASGWLPAALDECRLMQMR-RQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD 222 L ++ G C+ +Q + + W I +L + L L Sbjct: 118 EILTRLLKSLGRWEWMEQSCKRIQRKIENSFLGSPKEWERIEGVHKLDFLGQSILFELQK 177 Query: 223 WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKA 282 WR A RD +++ E L ++ ++ G + ++ R LL +EK Sbjct: 178 WRKELALLRDTPPFKIIKSEDLVQIS-FISAHGGSIAAIPAVQRLEREVVGDLLKAIEKG 236 Query: 283 QTL-PEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWH 341 + P P + K F+ +K+ ++ I L+ASR ++++ Sbjct: 237 KQNGSWKESPGPKKLFLFDKEAAKRFEVLKNKRDKIASFLGIDPALIASRNLLSEMALHP 296 Query: 342 WKLKPQNNLPELISGWRGELMA 363 + + I W+ +L+ Sbjct: 297 GSGCQKLIDEDKICPWQAQLLG 318 >UniRef50_C2CWJ0 Ribonuclease III n=3 Tax=Bifidobacteriaceae RepID=C2CWJ0_GARVA Length = 481 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 113/277 (40%), Gaps = 13/277 (4%) Query: 4 QMITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT 61 ++I T +A C + +A D E Y + LIQ G + L+DP+ + Sbjct: 41 EVIDTLEAYKEYCNLLAAGSGPLAADAERASGFRYGHEDWLIQFKRKGAGIGLLDPIALG 100 Query: 62 ----DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 DW + D +H +DL F G P+ L DT+I A GR +G Sbjct: 101 KLGVDWHEFNEAVGDA--PWIIHDSMQDLPGFF-DIGLRPRALFDTEIAAKLLGR-KRFG 156 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 +S+ E Y G+TL K S DW RPL YAA DV L+ + + E + G L Sbjct: 157 LSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMSGELKKQGKLL 216 Query: 178 AALDECRLMQMR-RQEVVAPEDAWRDITNAWQLRTRQ--LACLQLLADWRLRKARERDLA 234 A E + + Q+ + W I++ L + L + L R A + D+A Sbjct: 217 WANQEFAHLLSKGAQKKSPHPNPWLRISHISVLMHDKVGLMIAKELWQKRDELACQYDIA 276 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH 271 ++ + + + P + E S+ + +R H Sbjct: 277 PTLLLSDAAIIEAGKRKPSNSREFRSIRILNERVRIH 313 >UniRef50_D2RBB4 3'-5' exonuclease n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBB4_GARVA Length = 476 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 118/277 (42%), Gaps = 13/277 (4%) Query: 4 QMITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT 61 ++I T +A C + +A D E Y + LIQ G + L+DP+ +T Sbjct: 17 EVIDTLEAYKDYCSLLEAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELT 76 Query: 62 ----DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 DW+ + D + +H +DL F N+ G P L DT+I A GR +G Sbjct: 77 KLGADWNEFNKAVGD--VPWIIHDSMQDLPGFFNI-GLRPLALFDTEIAAKLLGR-KRFG 132 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 +S+ E Y G+TL K S DW RPL YAA DV L+ + + VE + G L Sbjct: 133 LSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLS 192 Query: 178 AALDECRLMQMRRQEVVAPED-AWRDITNAWQL--RTRQLACLQLLADWRLRKARERDLA 234 A +E + + + + AP W I++ L L + L R ARE D+A Sbjct: 193 WAEEEFKHLLSKGAQKKAPHPRPWLKISHISVLMHDRVGLVIAKALWQKRDALAREYDIA 252 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH 271 ++ + + + P + ++ +R H Sbjct: 253 PTLLLSDAAIIEAGKRKPSNARAFRAIRSLNERVRMH 289 >UniRef50_A6G563 Ribonuclease D, putative n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G563_9DELT Length = 386 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 82/353 (23%), Positives = 133/353 (37%), Gaps = 15/353 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI- 60 + + TD L +L + +R +ALD+E Y ++ L+QL L L+D L + Sbjct: 6 EHSWVRTDAELTALAQRMRDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALA 65 Query: 61 --------TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR 112 + L L PS+ ++H G D+ FG L DTQ A+F G Sbjct: 66 GDSGEPRAEALAALAEPLASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLGW 125 Query: 113 PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 G+A++VE L K+ + DW RP+ + YA DV +L + +L A Sbjct: 126 S-RTGYAAVVEAVCEQKLPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELEARIGA 184 Query: 173 SGWLPAALDECRLMQMRR--QEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARE 230 + + + P W+ + A L +L L + WR K RE Sbjct: 185 ADLDEELAIANASVAAAPAHRSAFDPSRMWK-LKGARDLPAERLPVLAAIYRWREDKGRE 243 Query: 231 RDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQT--LPED 288 D ++ E L +AR P L + L I+ HG+ LLA + P Sbjct: 244 LDHPPGRLIANEPLVHLARRAPRDAAALKRMRLRRGFIQSHGEGLLAAIAAGLEGGDPLA 303 Query: 289 ALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWH 341 +P +K +E ++ +++ R +N L Sbjct: 304 EVPPKPKRERPPSSQVSRASRLKDWRRAEAEAREVPMQVVLPPRALNWLATHG 356 >UniRef50_A4S626 Predicted protein (Fragment) n=3 Tax=Eukaryota RepID=A4S626_OSTLU Length = 176 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 3/170 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q++ T DAL L + A+D E R++ L+Q+ E ++D L + Sbjct: 8 QVVETVDALEELAAHLEECKEFAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLALRSH 67 Query: 64 --SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L D K +H D++ FG L DT A P S G A + Sbjct: 68 VRDALGKAFADADKLKVMHGADNDVQWLQKDFGMFVSCLFDTGQAARVLELP-SKGLAYL 126 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 + Y G+ +K DW RPLT+ EYA D +LL + +L Sbjct: 127 LHHYCGIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHDRLKEALR 176 >UniRef50_Q5CS61 RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain n=2 Tax=Cryptosporidium RepID=Q5CS61_CRYPV Length = 957 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 1/147 (0%) Query: 25 IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDWSPLKAILRDPSITKFLHAGS 83 +A+D E ++Y + LIQL H +IDP + + L + +P I K LH Sbjct: 304 LAIDVEHHSNQSYKGFVSLIQLSTRTHDYIIDPFNLFNEIQMLNELTANPKILKVLHGSD 363 Query: 84 EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 D+ F + DT A P + +++ Y + +DK DW RP Sbjct: 364 YDIIWLQRDFSVYIVNMFDTGQAARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRERP 423 Query: 144 LTERQCEYAAADVWYLLPITAKLMVET 170 L+ EYA D YLL I + Sbjct: 424 LSNELIEYARGDTHYLLYIYDIMKNLL 450 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 14/129 (10%) Query: 168 VETEASGWLPAALDECRLMQMRRQEVVAPEDAW-------RDITNAWQLRTRQLACLQL- 219 + + S L L R + ++ P D W I+ + A + L Sbjct: 508 TDLDPSALLT-VLHNSRQICLKEY-FEKPLDVWSLCYGVRTKISKSSYKTPIDSAIVTLV 565 Query: 220 ---LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTL 275 L WR AR D++ ++V++E + + + P + E+ L + I+ H + Sbjct: 566 SYYLFIWRDSIARLLDVSPSYVLKESMIIKICQKQPMNSVEILGLYPNIPVNIKKHSDHI 625 Query: 276 LALVEKAQT 284 L +V + Sbjct: 626 LNIVTTVKN 634 >UniRef50_C2CPA1 Ribonuclease D n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CPA1_CORST Length = 414 Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats. Identities = 92/402 (22%), Positives = 141/402 (35%), Gaps = 40/402 (9%) Query: 4 QMITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGIT 61 +++ + AS A+ R A+DTE + + + LIQ+ G L P G Sbjct: 14 EVLRSPAEFASATAALSRGTGPFAIDTERASSYRFDDRAFLIQIRRAGAGTFLFAPEGKR 73 Query: 62 DW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + L ++ D +HA DL G P L DT++ A Sbjct: 74 SELSAALAPVINDQD--WVVHAAPSDLPSL-AWLGLYPGTLFDTELAARMADFAHP-NLG 129 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +M+ E V L+K +DW A L+ YAA DV LL + L L A Sbjct: 130 AMILELFDVELEKGYGDSDWSAPKLSPNLRAYAALDVELLLELAEALRDILAEEDKLGWA 189 Query: 180 LDECRLMQMRRQEVVAP-EDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNF 237 +E M V P E WR + LRT QLA + L R AR D A N Sbjct: 190 YEEFAAMVDDYAGVTEPTERTWRGLKGLSSLRTGEQLAVAKALWTRRESIARSTDTAPNR 249 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML-- 295 V+ L +AR +P S + + + +V KA+ L P+ Sbjct: 250 VLPHRVLIDIARTLPDSPQQFARIKGIPRKRSGSALQWFDVVNKARALDPQDWPRQQRTI 309 Query: 296 --------NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQ 347 D P + F+ ++ D+ + + EL+ + ++ W P+ Sbjct: 310 SQVPSKTIWAKDYPELWEVFQNLREECEDLGDEVAMPWELILKPATLRAVV-WAAGCPPK 368 Query: 348 NNLPELISG-------------------WRGELMAEALHNLL 370 P + G W+ EL+ L L Sbjct: 369 AKKPGSVGGMIKGPQDIAPFLRDEGVREWQIELLQPILEEGL 410 >UniRef50_Q4JVB6 Rnd protein n=2 Tax=Corynebacterium jeikeium RepID=Q4JVB6_CORJK Length = 423 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 136/369 (36%), Gaps = 31/369 (8%) Query: 7 TTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLGITDWS 64 T + ++ + IA+DTE Y + LIQL G LIDP + Sbjct: 16 DTPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQAT 75 Query: 65 P-LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + ++ + LHA DL + G PQ L DTQI G G + M++ Sbjct: 76 RRMAEVVNEAE--WVLHAAHTDLPCLM-ALGWRPQVLHDTQIAGQLLGA-ERIGLSGMLD 131 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Y + + K + DW RPLT+ YAA DV +LL + + E +G + EC Sbjct: 132 AYFDIQVPKDKGNADWSRRPLTQAMLNYAALDVEWLLELLDCCLEELAKTGRTEWYIQEC 191 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQ-LACLQLLADWRLRKARERDLAVNFVVREE 242 + + + A + W D+ LR L + R AR D++ ++R Sbjct: 192 QHVLASASPLSAND--WTDLKGLSSLRRALPRRIAHDLWESRDAMARRGDISPESILRSR 249 Query: 243 HLWSVARYMPGS----LGELDSL------GLSGSEIRFHGKTLL-ALVEKAQTLPEDALP 291 L +A L +L+S + R + L AL+ Q + Sbjct: 250 DLVDIAGRAERDRVGALQQLNSCLHRSRARMKPRARRHMAEQLSDALMSDTQDIETQQFH 309 Query: 292 QPMLNLMDMPGYRKAF----------KAIKSLITDVSETHKISAELLASRRQINQLLNWH 341 P +P YR AI + + + +I + + +RR + Q Sbjct: 310 PPHAPSKGIPDYRTWPDEYPVAAAYSDAILTAADNAANILQIRLDTIVTRRNLRQAAWSC 369 Query: 342 WKLKPQNNL 350 W K N L Sbjct: 370 WLAKDTNAL 378 >UniRef50_Q241P8 3'-5' exonuclease family protein n=2 Tax=Eukaryota RepID=Q241P8_TETTH Length = 722 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 95/228 (41%), Gaps = 11/228 (4%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y +I T + L L + + +DTE +TY L LIQ+ ++ LID LGI Sbjct: 25 YILIDTLNKLQDLIPILLEQTRLGIDTEQSFAKTYEGFLCLIQISTDQNDYLIDVLGINS 84 Query: 63 WSPLKA----ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 + + I K +AG +D+ F D + A+F + Sbjct: 85 KQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFDLSVVNYFDVKECASFLKKSDDNSL 144 Query: 119 ASMVEEYSGVTLDKSE----SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174 +++ Y LDK + ++W RPL++ Q +YAA D YL+ I +L+ ET S Sbjct: 145 IQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLDYAALDSHYLIKIRYELLCETIQSV 204 Query: 175 WLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD 222 ++ + QM++Q + E D + L +Q Q L Sbjct: 205 GFKRTIE--VINQMQQQTLKKYEKKKFDYQYFFDLFQKQFKH-QELYA 249 >UniRef50_B8C5L5 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C5L5_THAPS Length = 181 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 77/179 (43%), Gaps = 12/179 (6%) Query: 4 QMITTDDALASLCEAVRAF------PAIALDTEFVRTRTYYPQLGLIQLF---DGEHLAL 54 I +D + L + IALD E RT+ + LIQL + L Sbjct: 4 IWIGNEDEMTELATRINDGEQSGEIREIALDLEAHSHRTFAGFVCLIQLSIHISSGYDFL 63 Query: 55 IDPLGITDWSP--LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR 112 ID L + P L IL +P+I K +H D+ FG L DT + Sbjct: 64 IDALSLRHVIPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRALKF 123 Query: 113 PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 S G A ++ +Y+G+ DK+ +DW RPL + YA AD YLL I KL +E + Sbjct: 124 -QSAGLAFLLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYLLDIYDKLRLELK 181 >UniRef50_D0RPF8 Putative ribonuclease D n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPF8_9RICK Length = 352 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 74/367 (20%), Positives = 152/367 (41%), Gaps = 32/367 (8%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-W 63 ++ L + + +DTEF R +TYY +L +I + DG+ + + D L D Sbjct: 2 IVNNQKKLELFKKYFNKKNCLCVDTEFERKKTYYSKLSIITISDGQKVFIFDLLKFPDQI 61 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 ++ I + K +H G +D+E+FLN +P DTQI + F G + +A++V+ Sbjct: 62 KTIREIFKSKKKIKIIHGGMQDIEIFLNH-NVNIEPFFDTQIASGFLGLDKNISYANLVK 120 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 +Y LDK DWL RPL Q +Y DV YL + + L A +E Sbjct: 121 KYFKKILDKKHQNEDWLKRPLLNSQIKYLERDVKYLKKMYLIQNKLLKKEKKLNFAKEEF 180 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 L+ + + ++ + L + R +++++L N+++++E Sbjct: 181 SLILKKIKNNNGINSKFKKKLGIQLYNNKNFINLIKI---RDDLSKKKNLPKNWILKDEE 237 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 + ++ + + + + + S ++I+ + L++K + + Sbjct: 238 IITIIKNKSFHIIKKNKI-FSQNQIK----DIANLLKKLSKI-----------RVKKENN 281 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 K+++ VS+ + I L+AS+ I + + K WR ++ Sbjct: 282 EIQIKSLEFFRFLVSKKYSIDQNLIASKFDIAEYKSIKKNSK-----------WRNKIFY 330 Query: 364 EALHNLL 370 + ++ Sbjct: 331 DLYEKII 337 >UniRef50_A2EMW6 HRDC domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2EMW6_TRIVA Length = 443 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 68/295 (23%), Positives = 113/295 (38%), Gaps = 21/295 (7%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGIT 61 Y+ I + L SL + + + L E R RTY P L+ L+ L +ID + + Sbjct: 159 YKTIDNERDLLSLSQQLLKTNILFLSLEIHRIRTYRPYPCLLTLYSPTYGLFIIDLMKLR 218 Query: 62 -DWSPLKAILRDPSITKFL-HAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + PLK IL++P K DL + G P ID + ++ G+ + Sbjct: 219 FNLDPLKEILQNPDYVKVFFDPNIYDL--LVESCGIFISPSIDLSL--SYPGKTIDQCIK 274 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 + EE + DW RPLT+ A V +L + A +P+ Sbjct: 275 ELNEEQESL----QNIVVDWRIRPLTKFMESTAIEGVLHLPHLAAMAENIVLPEQIIPSF 330 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAW-QLRTRQLACLQLLADWRLRKARERDLAVNFV 238 + +M E + DI + L L+ L WR A D + NF Sbjct: 331 IPYSFTPEMA-------EKMYNDIIAKYGDLEQFSSTILKELISWRDSVAAIEDESPNFF 383 Query: 239 VREEHLWSVARYMPGSLGELDSL--GLSGSEIRFHGKTLLALVEKAQTLPEDALP 291 V + +W +A+ +P + EL S + + + +L ++ A+ E P Sbjct: 384 VTDNQIWKIAKNLPTTQDELISCFGTVIPPLVSTYRGDILQMIVAAKEKSEGKTP 438 >UniRef50_A9EXG4 Rnd protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EXG4_SORC5 Length = 403 Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 130/336 (38%), Gaps = 15/336 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF----DGEHLALIDPLGI 60 ++ + LA L E A+A+D E Y P+L +QL DG + ++D L + Sbjct: 8 LVEREGELARLIERAGRADALAVDVEANGLFVYRPRLCTVQLAFREGDGIAVGIVDALRV 67 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +PL +L K LH + D + G DT + A G + G + Sbjct: 68 P-VAPLARLLGAAGPPKVLHDLTFDARML-AEAGAPLGGAHDTSVAARMLG-CAATGLGA 124 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++ V +DK + DW RP+ + + Y A DV +LLP+ A+L + A G Sbjct: 125 LLLSELDVKVDKQLQQHDWGRRPIEDAELRYLADDVRHLLPLRARLAERSGALGIDEEIE 184 Query: 181 DECRL-MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +EC + P A+ I A L + A L+ L R A D+ +V Sbjct: 185 EECAYKLATALGPPRDPRPAYARIKGAQALDPQGRAILRRLVAAREAAAEGADVPSFKIV 244 Query: 240 REEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQ---TLPEDA---LPQ 292 + L +A+ P S + G + L VE+ + +PED Q Sbjct: 245 ASDVLLELAQRRPASADDVRAVRGAAAGRAAGCVAAWLRAVEQGRSDGDVPEDERALFQQ 304 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELL 328 ++ R I + ++ K+ +++ Sbjct: 305 ARPPRKELAARRAVETRIAAWRRAEAKARKVDEQVV 340 >UniRef50_Q8LMQ9 Putative nucleolar protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8LMQ9_ORYSJ Length = 523 Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 96/319 (30%), Gaps = 79/319 (24%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + ++ + LA L + +++ A+D E + R++ L+Q+ ++D L + Sbjct: 145 FTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRI 204 Query: 63 WSP--LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + LK +DP+ K +H D+ F L DT + R Sbjct: 205 YIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTGQVQK---RSNEICLQL 261 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +E D YL I + +A Sbjct: 262 YEKELL---------------------------TDTSYL-HIYGLQEHDLDA-------- 285 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +QLA + L WR ARE D + +V+ Sbjct: 286 -------------------------------KQLAVVYALHQWRDYIAREVDESTGYVLP 314 Query: 241 EEHLWSVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + L +A+ MP EL + S + + ++ ++ A Sbjct: 315 NKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYA------FESRA 368 Query: 300 MPGYRKAFKAIKSLITDVS 318 ++ + + + +S Sbjct: 369 EQLKKERLEQLTDRVQTIS 387 >UniRef50_Q69RB5 Polymyositis/scleroderma autoantigen 2-like n=3 Tax=Oryza sativa RepID=Q69RB5_ORYSJ Length = 1031 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 20/190 (10%) Query: 70 LRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVT 129 L I H D+ F + DT +P A ++E Y GVT Sbjct: 295 LTAWMIYMIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQK-SLAYLLELYCGVT 353 Query: 130 LDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 DK+ R DW RPLT +YA D YLL I L E A Sbjct: 354 TDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK---------------T 398 Query: 190 RQEVVAPEDAWRDITNAWQLRTR-QLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 +P D I ++ R + + + WR AR D ++ +V+ ++ + S+A Sbjct: 399 YDASDSPND---KINFFFEASHRSNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASLA 455 Query: 249 RYMPGSLGEL 258 +P E+ Sbjct: 456 VSVPRGPTEV 465 Score = 95.7 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Y + TD L L + A A+DTE R++ L+Q+ + LID + + Sbjct: 144 SYNWVETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTIALH 203 Query: 62 D-WSPLKAILRDPSI 75 D S L+ + +PSI Sbjct: 204 DVMSILRPVFANPSI 218 >UniRef50_B7G899 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G899_PHATR Length = 311 Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 73/197 (37%), Gaps = 29/197 (14%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE------------- 50 I T D L E + IALD E R++ + L+QL + Sbjct: 116 TWIDTVDEWRRLGERLAHVTEIALDLEAHSYRSFAGMVCLLQLSFRDHHYHDKDDHDTPN 175 Query: 51 ------------HLALIDPLGITDW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGEL 96 H LID + + + L +L +P + K LH D+ FG Sbjct: 176 DNDDTNDNSPTVHNFLIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLY 235 Query: 97 PQPLIDTQILAAFCGRPMSWGFASMVEEYS-GVTLDKSESRTDWLARPLTERQCEYAAAD 155 L DT A P +A +++ Y G+ DKS DW RPL E +YA D Sbjct: 236 IVNLFDTMRAARALKFP-RASYAYVLQHYVDGLHADKSAQLADWRVRPLPEALQQYAIQD 294 Query: 156 VWYLLPITAKLMVETEA 172 YLL I ++ + Sbjct: 295 TAYLLDIYDRMRYDLSQ 311 >UniRef50_Q55641 Ribonuclease D n=50 Tax=Cyanobacteria RepID=Q55641_SYNY3 Length = 217 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 79/178 (44%), Gaps = 4/178 (2%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH--LALIDPLGITDWSPLKAIL 70 +C+ + A +A+DTE + + +L L+Q+ D E AL G + L ++ Sbjct: 19 EDVCQQLLACKEVAVDTETMGLNPHRDRLCLVQICDPEGNVTALRIAKGQEEAPNLTRLM 78 Query: 71 RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS-WGFASMVEEYSGVT 129 DP ITK H D + F P+ T+I + S G ++V+E GV Sbjct: 79 EDPGITKIFHFARFDTAQLKHTFDIKTYPIFCTKIASKIARTYTSHHGLKTLVQELVGVE 138 Query: 130 LDKSESRTDWL-ARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 LDKS +DW A L++ Q YAA DV YL+P+ KL L A + Sbjct: 139 LDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKMLAREDRLRLAQRCFECL 196 >UniRef50_Q31QF9 3'-5' exonuclease n=3 Tax=Synechococcus RepID=Q31QF9_SYNE7 Length = 211 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 58/189 (30%), Positives = 82/189 (43%), Gaps = 5/189 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD--GEHLALIDPLG 59 ++ + D L R PAIA+DTE + + +L L+QL D G + G Sbjct: 7 DFHLCEQDLT-DELLAQYRQSPAIAIDTEAMGLNFHRDRLCLVQLCDSAGITTCVRIAQG 65 Query: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGF 118 T L+A+ DP ITK H D+ + G QP+ T+I + G Sbjct: 66 QTVAPNLQALCEDPQITKVFHFARFDITALKHGLGIAVQPIFCTKIASKLARTYSSQHGL 125 Query: 119 ASMVEEYSGVTLDKSESRTDWL-ARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 S+++E GV LDK+ +DW A L+ Q YA DV YLL AKL + G Sbjct: 126 KSLLQELVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREGRWQ 185 Query: 178 AALDECRLM 186 A D + Sbjct: 186 LAQDCFACL 194 >UniRef50_UPI00006CF2A3 3''''-5'''' exonuclease family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CF2A3 Length = 964 Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 7/192 (3%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRT--YYPQLGLIQLFDGEHLALIDPLGITDW 63 I +D++ L E + +D E+ + IQ+ +ID + + + Sbjct: 757 IDSDES-RILKEEIEKNSIFGIDLEYYSENKDKNLGFVCTIQISTVNMDFMIDAMALRNQ 815 Query: 64 --SPLKA-ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFA 119 L + + + K LH D++ N F L DT + S+ Sbjct: 816 INQLLNKSLFLNKTKIKILHGCENDIKWLKNDFDIDIVNLFDTMFAEMIIKNKQQSYSLK 875 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 ++ ++Y GV LDKS +DW RPL YA D + LL + + + L Sbjct: 876 NLSQDYLGVELDKSYQISDWRIRPLPTPMMNYARVDSFILLRLFPIMKQMLTSKNLLNQM 935 Query: 180 LDECRLMQMRRQ 191 +C L +R+ Sbjct: 936 FLKCLLFIIRQS 947 >UniRef50_A0L4G0 3'-5' exonuclease n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4G0_MAGSM Length = 213 Score = 167 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 3/188 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + I D + + P +A+DTE + +L ++Q+ D + + Sbjct: 9 HTFIDDLD--EAQFQRYMKSPFLAVDTETMGLDINRDRLCVVQMCDVTGEVSVVQIRNYQ 66 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASM 121 LKA++ P + K H DL +P+ T+I + S G + Sbjct: 67 APRLKALMEAPEVEKIFHFARFDLATMKRWLDIEIKPVFCTKIASKLVRTYTGSHGLKDV 126 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 +E GV +DK + +DW A LT Q +YAA+DV +L+ I A+L+ G L A + Sbjct: 127 SQELLGVVMDKQQQSSDWGAEQLTPEQLQYAASDVIHLVEIRARLVEMLAREGRLQLADE 186 Query: 182 ECRLMQMR 189 R + R Sbjct: 187 IMRFLPTR 194 >UniRef50_O67779 DNA polymerase I n=4 Tax=Aquificaceae RepID=DPO1_AQUAE Length = 574 Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 9/174 (5%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+++ +T ++ L + + P + LDTE ++ L+Q+ D E+ +ID I Sbjct: 1 MDFEYVTGEEGLKKAIKRLENSPYLYLDTETTG-----DRIRLVQIGDEENTYVIDLYEI 55 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D PL+ ++ + I H DL+ +G P DT I + G Sbjct: 56 QDIEPLRKLINERGI--VGHNLKFDLKYLYR-YGIFPSATFDTMIASYLLGY-ERHSLNH 111 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174 +V G ++DKS +DW A L++ Q +YAA DV L + K+ Sbjct: 112 IVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELD 165 >UniRef50_A0CQJ2 Chromosome undetermined scaffold_24, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CQJ2_PARTE Length = 733 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 17/220 (7%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-- 60 ++ I+ ++ L ++ I +D E + Q+ ++Q+ D E + +ID + I Sbjct: 41 FKYISNENELNQF--QLKG-SIIGVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGV 97 Query: 61 ---TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 + K I D I K +AGS D+ F Q D + +A C Sbjct: 98 DNQKLINVFKQIFEDDKIIKVFYAGSTDVLWLKRDFQITIQNFFDIKEVADECKLS-KIS 156 Query: 118 FASMVEEYSGVTLDKSE----SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS 173 + ++Y + KS +DW RPLT+ Q YAA D +YL + L+ E + Sbjct: 157 LIFLWKQYCDHQVSKSYKTNMQTSDWAERPLTQEQLIYAAYDCYYLPYLRYVLLEELSKA 216 Query: 174 GWLPAALD----ECRLMQMRRQEVVAPEDAWRDITNAWQL 209 + E +++ ++ +++ +D + I + L Sbjct: 217 DIKKQSKIQKKFEKAILKDYKKPILSNQDLAKIIDKEYNL 256 >UniRef50_Q0BUA3 Ribonuclease D n=208 Tax=Bacteria RepID=Q0BUA3_GRABC Length = 259 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 8/187 (4%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE---HLALIDPLGIT----DWSP 65 L ++ P IA+DTE + + +L LIQ+ G+ HL I P + D Sbjct: 59 HDLPPSLDIGPIIAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQIVPERLGGKGADCPN 118 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEE 124 LK +L +P K +H D+ + N G + T+I A G + + Sbjct: 119 LKRLLSNPGCVKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLVRTFTDRHGLKDLCRD 178 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 GV + K + +DW A LT Q YAA+DV YL + +L L A Sbjct: 179 LLGVEISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWNRLEGLLIREDRLALAEACFA 238 Query: 185 LMQMRRQ 191 + R + Sbjct: 239 FLPARAR 245 >UniRef50_Q97HU8 Ribonuclease D n=1 Tax=Clostridium acetobutylicum RepID=Q97HU8_CLOAB Length = 205 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 3/170 (1%) Query: 19 VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKF 78 + IA+DTE +L LIQ+ E + LI ++ L IL+ I K Sbjct: 20 LNNCKYIAIDTETTGLDPLKDKLCLIQICAKEKIFLI-KYNNSNQKNLIGILQCSKIIKI 78 Query: 79 LHAGSEDLEVFLNVFGEL-PQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKSESR 136 H + DL + ++ T+I A G + ++ +Y + +DK + Sbjct: 79 FHHANFDLRFLMKNLKIYNINNVVCTKIAAKLLNGIEIENSLKKLLRKYLNINIDKKLQK 138 Query: 137 TDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 ++W A LT+ Q +YA DV YL + L E + A + + + Sbjct: 139 SNWSAENLTKEQIQYATYDVIYLEKLWRALKAELIKANLYSLAEECFKYL 188 >UniRef50_Q3YR08 3'-5' exonuclease n=4 Tax=Bacteria RepID=Q3YR08_EHRCJ Length = 216 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 2/180 (1%) Query: 14 SLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGITDWSPLKAILRD 72 L + A+A+DTE + +L L+QL D + L+ G L ++L D Sbjct: 21 DLPNGLNFEDAVAIDTETMGLVCRRDRLCLVQLADSSGNVHLVKFSGNYQAPNLVSVLSD 80 Query: 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLD 131 P+I K H D+ V G P T+I + G + E GV L+ Sbjct: 81 PNIIKIFHFARFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKELCYELLGVKLN 140 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQ 191 K + +DW LT Q YAA+DV YL + +KL + A + +Q R Q Sbjct: 141 KMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKRELAAACFKFLQTRAQ 200 >UniRef50_Q16D56 3'-5' exonuclease family protein, putative n=10 Tax=Alphaproteobacteria RepID=Q16D56_ROSDO Length = 248 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 3/182 (1%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALID-PLGITDWSPLKAIL 70 L + + P +A+D E + + +L ++QL G+ LI G T+ L +L Sbjct: 52 NDLPDGLDLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLL 111 Query: 71 RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVT 129 DP + K H G D+ LN FG P+ T+I + G A +++E + Sbjct: 112 EDPKVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKLLQELLAID 171 Query: 130 LDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 + K + +DW A LT+ Q EYAA+DV YL + L E G + A + MR Sbjct: 172 ISKQQQSSDWGAETLTDAQIEYAASDVLYLHQLREALNKMLEREGRMETAQACFDFLPMR 231 Query: 190 RQ 191 + Sbjct: 232 AK 233 >UniRef50_UPI0001C360F5 hypothetical protein ChatD1_13164 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C360F5 Length = 626 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 14/233 (6%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLG 59 + +++I+ L V+ P +A+DTE + +L LIQ+ + +ID Sbjct: 48 VEFRIISQPSDLTPYFHTVKEAPLLAIDTETTGLDPHSDRLRLIQISAPGIPVLVIDCAA 107 Query: 60 --ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAF---CGRPM 114 ++ LK +L PS K H DL+ + G P+ DT + A CG P+ Sbjct: 108 FLPDGFACLKELLNTPS-EKIFHNARFDLQFLM-GIGIDCFPVFDTMLAAQLLRPCGGPL 165 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174 G A + + Y G+ LDK+E W + LT Q YAA D W LL + + G Sbjct: 166 KAGLAVVADHYLGIKLDKTEQTGSWDSASLTGSQLAYAALDAWILLKLYDVMNPLLARHG 225 Query: 175 WLPAALDECRLMQMRRQEVVA----PEDAWRDITNAWQLRTRQLACLQLLADW 223 A E + + + W ++ + + A L+ L + Sbjct: 226 LGRTASIEFACVSAIARTEYDGINLDLEKWDELRR--KTEKQYDAALETLYTY 276 >UniRef50_D0LTA5 3'-5' exonuclease n=2 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTA5_HALO1 Length = 925 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 9/171 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQ-LGLIQLFDGEHLALIDPLGITD 62 + + AL C A+ P + LD E T + + L L+QL E+ +ID + D Sbjct: 757 RYVDQQAALEQACAALLGEPRVGLDVET----TLFDRALCLVQLAAPEYTVVIDARAVDD 812 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDT-QILAAFCGRPMS--WGFA 119 P+ +L ++ K +H + VF G + + DT ++ GR G Sbjct: 813 LGPVSELLASRAVVKIIHNAQFERSVF-RKLGMDIENVFDTLKVSRRLRGRKREGGHGLG 871 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 ++ G LDK E R+DW RPLT+RQ +YAA D LL + + E Sbjct: 872 AVCARELGRELDKHEQRSDWTLRPLTQRQLDYAALDAEVLLVLHERFTREL 922 >UniRef50_Q04QR5 Ribonuclease D-related n=6 Tax=Leptospira RepID=Q04QR5_LEPBJ Length = 212 Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 16 CEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLGITDWSPL-KAILRDP 73 E +A +A+D E + +L ++Q+ D +++L+ L +PL K++ +P Sbjct: 22 LEEYKADDRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFENP 81 Query: 74 SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLDK 132 I K H D G + + T+I + G +++E+ +DK Sbjct: 82 EIVKIFHFARMDSLFLRYRLGISLENVFCTKIASKLARTYTDKHGLKDLIKEFYDEVIDK 141 Query: 133 SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 +DW + LT+ Q EYA+ DV YL+ + KL G A + R + Sbjct: 142 KNQSSDWGKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRDSLAREAFRCL 195 >UniRef50_Q7UZS1 Putative ribonuclease D n=3 Tax=Cyanobacteria RepID=Q7UZS1_PROMP Length = 213 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 4/168 (2%) Query: 14 SLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDP-LGITDWSPLKAILR 71 L + +A+DTE + +L LIQ+ + A I L +D +K + Sbjct: 20 DLYNLYKDSSYLAVDTEAMGLIHGRDRLCLIQICNELNLTACIKIELNNSDSPNIKKLFE 79 Query: 72 DPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTL 130 D +I K H D+ + + T+I + G ++ E V L Sbjct: 80 DKNIMKIFHYARFDVAALRCNLEINTRNIFCTKIASKLARTYTNKHGLKDLINELLEVEL 139 Query: 131 DKSESRTDW-LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 DKS +DW L+ +Q +YAA DV YL+ KL + + G Sbjct: 140 DKSSQSSDWGSLEDLSNKQIDYAANDVRYLIETMHKLKLILDREGRYE 187 >UniRef50_A0DUC4 Chromosome undetermined scaffold_64, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0DUC4_PARTE Length = 529 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 28/230 (12%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 I +++ L L A +D EF R + LIQ+ DG+ + L DP+ + Sbjct: 2 YINSENLLPKL-----EGQAFGIDIEFSNNR-----ICLIQISDGKEIYLFDPIALNLEQ 51 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 ++ ++ +I K ++G++DL+ N + + D ++LA + ++ ++ Sbjct: 52 YMREFFKNDAI-KIFYSGAQDLKWLKNEYQIVVNNYCDLKVLAQ---KEPDLSLIALWKK 107 Query: 125 YSGVTLD----KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLM----VETEASGWL 176 Y GV + K ++DW ARPLTE Q YAA D YL+ + L+ E + S Sbjct: 108 YCGVQFEREDKKRLQKSDWFARPLTEEQLFYAALDCKYLVVLREILLQQYTEEEQKSIHF 167 Query: 177 PAALDECRLMQMRRQEVVA------PEDAWRDITNAWQLRTRQLACLQLL 220 L E +L++ ++++ P+ +R I +T L + L+ Sbjct: 168 STDLKEPKLLRYLKKQLADNQDVLLPQKIYRHIKFQEPFQTDDLKVIGLI 217 >UniRef50_D2A545 Putative uncharacterized protein GLEAN_15251 n=2 Tax=Tribolium castaneum RepID=D2A545_TRICA Length = 317 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 80/235 (34%), Gaps = 56/235 (23%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSP 65 I T +L L ++A+ + +D E+ Y L+Q+ + +ID + + D Sbjct: 132 IDTKTSLEKLITDLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIALKDE-- 188 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEY 125 LHA +ED Sbjct: 189 -------------LHALNED---------------------------------------- 195 Query: 126 SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 V DK+ R D+ RPL + +YA D YL+ KL E + L A LD+C Sbjct: 196 YHVAKDKTMQRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCNN 255 Query: 186 MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 V E N ++ RQL L+ L WR + A+ D V V+ Sbjct: 256 CCKILYPKVEDEAYLSVRRNVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVLS 310 >UniRef50_B7FYJ7 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FYJ7_PHATR Length = 700 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 73/204 (35%), Gaps = 18/204 (8%) Query: 2 NYQMITTDDALASLCEAVRAFPAIAL--DTEFVRTRTYYPQLGLIQLFDGEH-LALIDPL 58 + ++ T + + + P +AL D E Y L+QL +IDPL Sbjct: 233 EWTLVDTPSKMRACISELSQSPPLALAFDVESYNKSKYTQLTCLLQLSTDHGMAYVIDPL 292 Query: 59 GI---TDWSPLKAILRDPSITKFLHA-GSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM 114 + L I DP I K H+ G D+ FG DT A Sbjct: 293 APGVFEEVGGLAPIFADPDIVKVGHSIGGLDVRSLHRDFGIFVINAFDTYEAAKVLCL-E 351 Query: 115 SWGFASMVEEY------SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV 168 S G A++ E Y +L DW ARPLT +Y DV +L+ + ++ Sbjct: 352 SHGLAAVCEHYGMKYTDLYKSLKNEYQTCDWRARPLTGPMIQYGRFDVHFLIELRMLMIR 411 Query: 169 ETEASGWLP----AALDECRLMQM 188 + + L E R++ Sbjct: 412 DLTKTYLFEIKPAEELHESRMVAD 435 Score = 44.4 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 5/111 (4%) Query: 163 TAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDI-----TNAWQLRTRQLACL 217 A L ++ L + C+ + R+E + + + N Q+A Sbjct: 539 AAVLRLQASLMKVLSWSQLRCKDLWSDRKEPFLKQKDFLSLLQRARRNEVHFGDSQIALY 598 Query: 218 QLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEI 268 + L WR R A + FV E L ++ P L + ++ Sbjct: 599 EELVAWRDRVATRLECLSGFVAPLELLVVISWQRPTCEESLRRITYYLPDV 649 >UniRef50_D0RRD6 3'-5' exonuclease family protein n=2 Tax=alpha proteobacterium HIMB114 RepID=D0RRD6_9RICK Length = 206 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 4/176 (2%) Query: 18 AVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGITDWSPLKAILRDPSIT 76 +++ +IA+D EF +L L+QL DG + L+ G + LK IL + I Sbjct: 16 SLKNASSIAIDGEFSGLNPLTDKLHLLQLCDGSDFVHLVKFEGKYNAPNLKEILENNKIK 75 Query: 77 KFLHAGSEDLEVFLNVFGELPQPLIDTQILAAF-CGRPMSWGFASMVEEYSGVTLDKSES 135 K H G DL + DT+I + G + + + L K Sbjct: 76 KIFHFGRADLAFLKQHLDIHVTNIFDTKIGSKISRKFSPHHGLKDLCRDLININLSKEYQ 135 Query: 136 RTDWLAR--PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 +DW + +E Q YA DV YL I +L + L A + ++ R Sbjct: 136 TSDWGKKIEEYSEDQILYACKDVLYLHKIKNELEKILKRENKLELAEQCFKFLETR 191 >UniRef50_Q1ARA6 DNA polymerase I n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ARA6_RUBXD Length = 582 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 5/184 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +++IT + L A+ + LD E ++ L+QL G ++D + D Sbjct: 8 FRLITGPEGLREAARALAGARRVGLDIEATGLSPLDARMRLLQLAAGGETFVVDVFEVKD 67 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG---RPMSWGFA 119 SPL+ L K LH D L G PL DT + A + S+ Sbjct: 68 LSPLREALEG-GPLKVLHNAKYDYSFLLAQHGIRLSPLFDTMLAAQLLDGGEQGPSYSLE 126 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 ++ Y T+DK+ R DW L+ Q EYAA D LLP+ +L E G P + Sbjct: 127 AVAGRYLQETVDKTARREDWSK-ELSREQLEYAARDAAILLPLHERLQELLEREGLGPVS 185 Query: 180 LDEC 183 E Sbjct: 186 RIEF 189 >UniRef50_Q4FNB9 Ribonuclease D n=3 Tax=Candidatus Pelagibacter RepID=Q4FNB9_PELUB Length = 203 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 4/168 (2%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT--DWSPLKAIL 70 L E + IA+D EF+ L LIQ+ G A I L D L +L Sbjct: 10 NDLPEDLDLGNIIAVDGEFMGLNVKRDPLCLIQISTGNSDAHIIQLDREKYDAPNLNKVL 69 Query: 71 RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVT 129 D SI K H G D+ + ++DT+I + S ++++E+ V Sbjct: 70 SDASIIKIFHYGRADMAHIKHYLKTETNNILDTKIASKLARSYSDSHSLKTLIKEFMNVD 129 Query: 130 LDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 + K +D+ L+ Q +Y A DV YL I +L + Sbjct: 130 VSKQFQSSDFGG-ELSPAQLKYCANDVIYLHKIHEELNKILVREKRID 176 >UniRef50_D1ZW95 Whole genome shotgun sequence assembly, contig_913 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZW95_SORMA Length = 134 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 27/157 (17%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 + +I LA+LC + +A+DTEF+R +Y+P+L LIQ+ + E A IDP+ Sbjct: 4 HPLIEDSATLAALCTRLATSDFVAVDTEFMRENSYWPELCLIQIANTEEAAAIDPMAPGI 63 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D +PL +L D +ED+ ++ A G+ G++++ Sbjct: 64 DLTPLLNLLTD----------NEDV----------------LKVAAMALGQGEQVGYSNL 97 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWY 158 V+ Y G+T+DK TDW RPL +RQ +YA AD + Sbjct: 98 VDAYLGITVDKGARFTDWSRRPLDDRQIDYAIADATH 134 >UniRef50_A9LGS2 Ribonuclease D (Fragment) n=1 Tax=uncultured planctomycete 5H12 RepID=A9LGS2_9BACT Length = 287 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 155 DVWYL-----LPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQL 209 DV L + + + L +DE L M + E W+ ++ L Sbjct: 39 DVAILAVPEAPDLYEVIEGHLKRLKRLAWYIDEVDLW-MEELVKMETEPQWQRVSGITSL 97 Query: 210 RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEI 268 R+LA ++ L R +A R+ + V+ ++ + +A+ S+G ++ G Sbjct: 98 NPRELAIVRELWICRDIEAARRNRSAKRVIPDDLIVELAKRGSSSIGSFKAIRGFENRVT 157 Query: 269 RFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELL 328 R + +EKA L + LP+ + M + + + +T V +IS ++ Sbjct: 158 RGISSEISEAIEKANGLAKTELPKKLPRGKSM-NLGLLGQFLSTALTVVCRDQQISPAIV 216 Query: 329 ASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQ 371 + + ++ W L + P L+ GWR E++ + + +L Sbjct: 217 GTASDVRKMAAWRLGLLKMDQPPSLVQGWRAEIVGQLIDQVLN 259 >UniRef50_B2V8G6 DNA polymerase I n=9 Tax=Aquificales RepID=B2V8G6_SULSY Length = 587 Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 14/186 (7%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTE-----FVRTRTYYPQLGLIQLFDGEHLALI 55 M+ IT ++ L SL + ++ P + LDTE F + ++ LIQ+ D E+ +I Sbjct: 2 MDINYITQENQLESL-KVLQDTPYLYLDTEVMIKDFENIDFFNDKIRLIQIGDEENTFVI 60 Query: 56 DPLGITD---WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR 112 D L I + ++ ++ + I H DL+ LP+ + DT I + + Sbjct: 61 DLLKINPEVVKNHIQNLIENKGI--IGHNLKFDLKFLKTNLNILPKIVFDTMIASQILAK 118 Query: 113 PMS---WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 S ++ + + + +DK+ ++ W A+ L+ Q EYAA D+ L + + + Sbjct: 119 GDSNQRHSLSASAKRFVSLDVDKTYQKSPWWAKDLSSEQIEYAAKDIDTLRHLFKEEKNQ 178 Query: 170 TEASGW 175 Sbjct: 179 LNQDNL 184 >UniRef50_A7AQX3 DNA polymerase I, putative n=1 Tax=Babesia bovis RepID=A7AQX3_BABBO Length = 1613 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 66/179 (36%), Gaps = 10/179 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGITD 62 + ++L SL LD E ++ L+Q+ + +ID + Sbjct: 1038 IFVNNPESLESLAPLFEHTKLCTLDIETTGLNHREDRIRLLQISTPDQPSVVIDVFKVP- 1096 Query: 63 WSPLKAI-----LRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM--- 114 LK L K LH G D+ + + P+ DT I A Sbjct: 1097 VPTLKECTWLVKLLGSQAVKVLHNGKFDINFLSHNGFNVKGPIFDTMIAAKLLSATRFNW 1156 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS 173 S + E Y + LDKS+ +DW PL E Q YA+ D LLP+ L + +A Sbjct: 1157 SCKLGHVAERYLNIVLDKSQQFSDWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLKAE 1215 >UniRef50_Q4UGW4 DNA polymerase i, putative n=2 Tax=Theileria RepID=Q4UGW4_THEAN Length = 1786 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 100/291 (34%), Gaps = 48/291 (16%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGITD 62 + + + L SL + A+ +D E Q+ L+QL +ID + Sbjct: 1201 IYVDSYEKLESLKPLFKDPKAVGVDIETTGLDHNTNQIRLVQLSVPNQPSVIIDLFKLNT 1260 Query: 63 WSP-----------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQI 105 +P LK + + K H G D+ E P+ DT + Sbjct: 1261 NNPESDNVVPGRNELIKCEWLKNLFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIFDTMV 1320 Query: 106 LAAFC--GRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPIT 163 + R +S + E Y + LDK++ +DW L E Q Y+A D + LLP+ Sbjct: 1321 ASKLLVASRYISCKLTHVSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPLY 1380 Query: 164 AKLMVETEASGWLPAALDECRLM-----------------------QMRRQEVVAPEDAW 200 L + + A E + + +++++ D + Sbjct: 1381 VILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDELKQEHQEISNDLY 1440 Query: 201 RDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYM 251 + ++ Q L+ L ++ + D + ++ + ++ R M Sbjct: 1441 SQLNHSEINLNSQKQVLEKL-----QELKIMDRSKKKIISDTSESTLIRNM 1486 >UniRef50_A2EJK5 HRDC domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2EJK5_TRIVA Length = 442 Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 104/286 (36%), Gaps = 24/286 (8%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLGI 60 +YQ I ++ L + +++ + + E R RTY P LI L+ + +ID L + Sbjct: 156 SYQFIDKEEDLKRVIFKLKSMTTLFISIEIHRVRTYIPFPCLIVLYSPYVGIFIIDLLKL 215 Query: 61 TDWS-PLKAILRDPSITKFLHAGSEDLEVFL---NVFGELPQPLIDTQILAAFCGRPMSW 116 + L +L + I K D E+F G P +D + Sbjct: 216 RCCTGILSELLYNKEIIKIF----FDKELFKIMHESLGIYVYPYVD-------LSLVNTQ 264 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 E D DW RP T+ A V L IT K ++ + Sbjct: 265 SL----EHIFKQEFD-GLCVVDWRIRPFTDELINIAVRRVNVLPKITIKSKIDLNIINKM 319 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 ++ M + + +A E + L + L L+ L WR KA D + N Sbjct: 320 N-VHEKEEFMHQKFTKEMARELVVHLCSKFGNLNSNGLKILEELLLWRDEKAYLEDESPN 378 Query: 237 FVVREEHLWSVARYMPGSLGELDSLGLSG--SEIRFHGKTLLALVE 280 F+ ++ +W ++ P S EL S ++ ++ +++ Sbjct: 379 FIALDKEMWILSYIQPMSSEELISCLGENISPYLKEDINGIVGIIK 424 >UniRef50_Q7NEY0 Glr3747 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NEY0_GLOVI Length = 195 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 12/182 (6%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTE---FVRTRTYYPQLGLIQLFDG--EHLALIDP 57 Y ++T L+ L + + +A+DTE + + T ++ L+Q++DG E +++ID Sbjct: 8 YVLVTETAQLSELVDRWQTRKVLAVDTETAHWHQVSTGKNRVSLLQVWDGTSEAVSVIDC 67 Query: 58 LGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-----GR 112 + + ++ +R+ I K +H DL + ++ T +A G Sbjct: 68 FAVDLTAFVEKTMRNWEIVKLIHNAPYDLAYL--GGAAQARSVVCTLQMARSIPTSRRGA 125 Query: 113 PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 ++ + G+ LDK ++W RPLT Q +YAA D W I + E Sbjct: 126 LERNSLKALSAHFLGIELDKRYQASNWALRPLTAEQLDYAALDPWVTFHIWEHMRALVEP 185 Query: 173 SG 174 Sbjct: 186 EN 187 >UniRef50_B1X218 DNA polymerase I n=3 Tax=Cyanothece RepID=B1X218_CYAA5 Length = 662 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 112/296 (37%), Gaps = 49/296 (16%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGI 60 +Y++I+ D++L + + + + LD E + ++ LIQ+ + LI+ GI Sbjct: 46 DYEIISDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEFRGI 105 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPL--IDTQILAAFC-------- 110 T+ L+ + P I K H + +++ G P IDT +++ Sbjct: 106 TNKETLRRFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTL 165 Query: 111 ------------------------------GRPMSWGFASMVEEYSGVTLDKSESRTDWL 140 P S+ +V G +LDKS +DW Sbjct: 166 EEDAKTGVLPIPDLTRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWG 225 Query: 141 ARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE----CRLMQMRRQEVVAP 196 PLT+ Q +YAA D +LP+ L + + A E R+ QM + Sbjct: 226 K-PLTQEQLQYAANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLD 284 Query: 197 EDAWRDITNAWQLRTR---QLACLQLLADWRLRKARERDLAVNFVVREEHLWSVAR 249 D W ++ + R ++AC L D + ++N E+ + ++AR Sbjct: 285 LDRWGELAKEIETRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAALAR 340 >UniRef50_Q23PU6 3'-5' exonuclease family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23PU6_TETTH Length = 634 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 94/265 (35%), Gaps = 13/265 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-W 63 I TD + E +R I D F R++Y + +++ + +ID L + + Sbjct: 94 YIKTDQEFNRMLELLRNAGVICWDVHFNTYRSFYGFVCFLEISTIDQDYIIDCLSLRNEI 153 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGEL-PQPLIDTQILAAFCGRPMSWGFASMV 122 LK I D I K E + FG L ID + P + + Sbjct: 154 HRLKEIFLDKQIVKITLDLQEKINWLYRDFGILNIVNSIDLSLYLKELNLPSIISY--LC 211 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE--ASGWLPAAL 180 K D+ RPL+ + Y A ++ L I + L L Sbjct: 212 GTLLNYPFQKILQNFDYRKRPLSLNEINYLRAFSYFPLRILSILTNNILSIEKSKLEELF 271 Query: 181 DECRL---MQMRRQEVVAPEDAWRDITNAW----QLRTRQLACLQLLADWRLRKARERDL 233 ++ +L + +++ E + E+ + +Q L+ + WR+++A+ D Sbjct: 272 NKSQLASCLSLKQLENLLQENLIEKHFEMFCIDRNYNEQQQYFLRKILKWRIQRAKLEDE 331 Query: 234 AVNFVVREEHLWSVARYMPGSLGEL 258 +V ++ + P S ++ Sbjct: 332 SVEYIFPACIIEKFISVYPTSSQQV 356 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P09155 Ribonuclease D n=146 Tax=Gammaproteobacteria Rep... 388 e-106 UniRef50_C9XUE4 Ribonuclease D n=1 Tax=Cronobacter turicensis Re... 381 e-104 UniRef50_C6C608 Ribonuclease D n=19 Tax=Gammaproteobacteria RepI... 360 5e-98 UniRef50_B7VI13 Ribonuclease D n=22 Tax=Gammaproteobacteria RepI... 356 8e-97 UniRef50_D0M5H9 Ribonuclease D n=15 Tax=Gammaproteobacteria RepI... 354 3e-96 UniRef50_UPI0000E0E878 ribonuclease D n=1 Tax=Glaciecola sp. HTC... 343 5e-93 UniRef50_Q0F2Y2 Ribonuclease D n=1 Tax=Mariprofundus ferrooxydan... 340 4e-92 UniRef50_A5F6R9 Ribonuclease D n=31 Tax=Vibrio RepID=A5F6R9_VIBC3 339 7e-92 UniRef50_A0YC02 Ribonuclease D n=1 Tax=marine gamma proteobacter... 336 9e-91 UniRef50_Q15S24 Ribonuclease D n=1 Tax=Pseudoalteromonas atlanti... 334 3e-90 UniRef50_Q47YC8 Ribonuclease D n=1 Tax=Colwellia psychrerythraea... 333 5e-90 UniRef50_C0N8D2 Ribonuclease D n=1 Tax=Methylophaga thiooxidans ... 331 3e-89 UniRef50_B9CJZ2 Ribonuclease D n=2 Tax=Atopobium RepID=B9CJZ2_9ACTN 331 3e-89 UniRef50_Q3ICG4 Putative RNase D, processing tRNAs n=3 Tax=Alter... 329 7e-89 UniRef50_B8F419 Ribonuclease D n=8 Tax=Pasteurellaceae RepID=B8F... 329 9e-89 UniRef50_C5BMI8 Ribonuclease D n=1 Tax=Teredinibacter turnerae T... 328 3e-88 UniRef50_A4BJR0 Ribonuclease D n=1 Tax=Reinekea blandensis MED29... 327 5e-88 UniRef50_B8GL88 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. HL-E... 326 8e-88 UniRef50_B8FEX5 3'-5' exonuclease n=1 Tax=Desulfatibacillum alke... 325 1e-87 UniRef50_B5JVS3 Ribonuclease D n=1 Tax=gamma proteobacterium HTC... 325 2e-87 UniRef50_C4K3X6 RNase D, processes tRNA n=9 Tax=Enterobacteriace... 324 2e-87 UniRef50_Q605A6 Ribonuclease D n=1 Tax=Methylococcus capsulatus ... 324 3e-87 UniRef50_A5G9G2 3'-5' exonuclease n=8 Tax=Desulfuromonadales Rep... 324 3e-87 UniRef50_C7RC18 Ribonuclease D n=1 Tax=Kangiella koreensis DSM 1... 323 7e-87 UniRef50_B3PKH0 Ribonuclease D n=1 Tax=Cellvibrio japonicus Ueda... 323 9e-87 UniRef50_B9ZRL3 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. K90m... 322 1e-86 UniRef50_Q21L29 Ribonuclease D n=1 Tax=Saccharophagus degradans ... 321 3e-86 UniRef50_Q0BVP4 Ribonuclease D n=18 Tax=Alphaproteobacteria RepI... 320 6e-86 UniRef50_A4VJA7 Ribonuclease D n=25 Tax=Bacteria RepID=A4VJA7_PSEU5 318 2e-85 UniRef50_A4GIY0 Putative ribonuclease D n=1 Tax=uncultured marin... 318 2e-85 UniRef50_C8WAD1 Ribonuclease D n=1 Tax=Atopobium parvulum DSM 20... 316 1e-84 UniRef50_Q3A7R1 RNase D n=2 Tax=Desulfuromonadales RepID=Q3A7R1_... 316 1e-84 UniRef50_A4A872 Ribonuclease D n=1 Tax=Congregibacter litoralis ... 316 1e-84 UniRef50_A4SMN8 Ribonuclease D n=2 Tax=Aeromonas RepID=A4SMN8_AERS4 315 1e-84 UniRef50_A9A075 3'-5' exonuclease n=1 Tax=Desulfococcus oleovora... 315 2e-84 UniRef50_B4RU88 Ribonuclease D n=2 Tax=Alteromonas macleodii Rep... 315 2e-84 UniRef50_A0KXU5 Ribonuclease D n=21 Tax=Shewanella RepID=A0KXU5_... 315 2e-84 UniRef50_P44442 Ribonuclease D n=25 Tax=Pasteurellaceae RepID=RN... 313 6e-84 UniRef50_A4E7K3 Putative uncharacterized protein n=3 Tax=Collins... 313 8e-84 UniRef50_B8KGY1 Ribonuclease D n=1 Tax=gamma proteobacterium NOR... 310 7e-83 UniRef50_Q5QWP5 Ribonuclease D n=2 Tax=Idiomarina RepID=Q5QWP5_I... 309 7e-83 UniRef50_Q2RSM2 Ribonuclease D n=10 Tax=Alphaproteobacteria RepI... 309 8e-83 UniRef50_A6FH72 RNase D, processes tRNA n=1 Tax=Moritella sp. PE... 309 9e-83 UniRef50_D2LDG9 Ribonuclease D n=1 Tax=Rhodomicrobium vannielii ... 309 1e-82 UniRef50_D0WEC8 Ribonuclease D n=1 Tax=Slackia exigua ATCC 70012... 308 2e-82 UniRef50_C1ZCS8 Ribonuclease D n=1 Tax=Planctomyces limnophilus ... 308 2e-82 UniRef50_C6XKM8 Ribonuclease D n=1 Tax=Hirschia baltica ATCC 498... 306 7e-82 UniRef50_D0CQ07 Ribonuclease D n=1 Tax=Silicibacter lacuscaerule... 304 2e-81 UniRef50_B3Q9Q3 Ribonuclease D n=5 Tax=Bradyrhizobiaceae RepID=B... 304 3e-81 UniRef50_A6VYC1 Ribonuclease D n=2 Tax=Marinomonas RepID=A6VYC1_... 304 4e-81 UniRef50_C4LF08 Ribonuclease D n=1 Tax=Tolumonas auensis DSM 918... 303 5e-81 UniRef50_Q1N1A2 Ribonuclease D n=1 Tax=Bermanella marisrubri Rep... 302 1e-80 UniRef50_B3E3R4 3'-5' exonuclease n=1 Tax=Geobacter lovleyi SZ R... 302 1e-80 UniRef50_C0QAP2 Rnd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 302 1e-80 UniRef50_C1AC33 Putative ribonuclease n=1 Tax=Gemmatimonas auran... 302 2e-80 UniRef50_A7HYE5 Ribonuclease D n=116 Tax=Alphaproteobacteria Rep... 301 2e-80 UniRef50_C7MN49 Ribonuclease D n=3 Tax=Coriobacteriaceae RepID=C... 301 2e-80 UniRef50_Q1QXJ4 Ribonuclease D n=1 Tax=Chromohalobacter salexige... 300 5e-80 UniRef50_A1UT53 Ribonuclease D n=5 Tax=Bartonella RepID=A1UT53_B... 299 1e-79 UniRef50_B7RU98 Ribonuclease D n=1 Tax=marine gamma proteobacter... 298 2e-79 UniRef50_Q2BKH7 Ribonuclease D n=1 Tax=Neptuniibacter caesariens... 298 2e-79 UniRef50_UPI00016C3C86 ribonuclease D n=1 Tax=Gemmata obscuriglo... 297 3e-79 UniRef50_Q7URG3 Ribonuclease D n=1 Tax=Rhodopirellula baltica Re... 297 5e-79 UniRef50_A3ZQI0 Ribonuclease D n=1 Tax=Blastopirellula marina DS... 296 7e-79 UniRef50_Q2SIW8 Ribonuclease D n=1 Tax=Hahella chejuensis KCTC 2... 296 9e-79 UniRef50_Q0BZZ0 Ribonuclease D n=1 Tax=Hyphomonas neptunium ATCC... 295 2e-78 UniRef50_Q31F99 Ribonuclease D n=1 Tax=Thiomicrospira crunogena ... 291 3e-77 UniRef50_A6C450 Ribonuclease D n=1 Tax=Planctomyces maris DSM 87... 290 5e-77 UniRef50_C4Q1K8 Polymyositis/scleroderma autoantigen-related n=1... 290 5e-77 UniRef50_A1SVE6 Ribonuclease D n=3 Tax=Psychromonas RepID=A1SVE6... 290 6e-77 UniRef50_C3ZLP6 Putative uncharacterized protein n=1 Tax=Branchi... 290 6e-77 UniRef50_Q6C721 YALI0E04444p n=1 Tax=Yarrowia lipolytica RepID=Q... 288 3e-76 UniRef50_UPI000180BC5E PREDICTED: similar to exosome component 1... 286 1e-75 UniRef50_A1B391 Ribonuclease D n=14 Tax=Alphaproteobacteria RepI... 285 2e-75 UniRef50_UPI0000E469F8 PREDICTED: similar to exosome component 1... 284 4e-75 UniRef50_Q7QBT6 AGAP002300-PA n=3 Tax=Culicidae RepID=Q7QBT6_ANOGA 282 2e-74 UniRef50_Q1YTB3 Ribonuclease D n=1 Tax=gamma proteobacterium HTC... 281 4e-74 UniRef50_D2QXT8 3'-5' exonuclease n=1 Tax=Pirellula staleyi DSM ... 279 1e-73 UniRef50_D0KY39 Ribonuclease D n=1 Tax=Halothiobacillus neapolit... 279 2e-73 UniRef50_Q55AW0 3'-5' exonuclease n=1 Tax=Dictyostelium discoide... 278 2e-73 UniRef50_Q6AJF4 Related to ribonuclease D n=1 Tax=Desulfotalea p... 278 3e-73 UniRef50_Q2G8P2 Ribonuclease D n=10 Tax=Sphingomonadales RepID=Q... 277 3e-73 UniRef50_UPI0001C31C49 Ribonuclease D n=1 Tax=Conexibacter woese... 277 4e-73 UniRef50_UPI0001926123 PREDICTED: similar to predicted protein n... 275 2e-72 UniRef50_B3RZJ7 Putative uncharacterized protein (Fragment) n=1 ... 274 4e-72 UniRef50_D2VPJ2 3'-5' exonuclease and HRDC domain-containing pro... 274 5e-72 UniRef50_B4X4T0 Ribonuclease D n=1 Tax=Alcanivorax sp. DG881 Rep... 273 7e-72 UniRef50_Q0VNN2 Ribonuclease D n=1 Tax=Alcanivorax borkumensis S... 272 1e-71 UniRef50_Q01780 Exosome component 10 n=55 Tax=Eumetazoa RepID=EX... 272 1e-71 UniRef50_A0Z9G7 Ribonuclease D n=2 Tax=unclassified Gammaproteob... 272 2e-71 UniRef50_Q17951 Protein C14A4.4a, confirmed by transcript eviden... 271 4e-71 UniRef50_A9V5N1 Predicted protein n=1 Tax=Monosiga brevicollis R... 271 4e-71 UniRef50_B0U173 Ribonuclease D n=18 Tax=Francisella RepID=B0U173... 270 5e-71 UniRef50_A2R7H4 Contig An16c0130, complete genome n=16 Tax=Eurot... 270 7e-71 UniRef50_B6K2U5 Exosome complex exonuclease RRP6 n=1 Tax=Schizos... 270 8e-71 UniRef50_C4QXG4 Exonuclease component of the nuclear exosome n=1... 269 8e-71 UniRef50_Q5GT27 Ribonuclease D n=10 Tax=Wolbachia RepID=Q5GT27_W... 269 1e-70 UniRef50_UPI0001793421 PREDICTED: hypothetical protein n=1 Tax=A... 268 2e-70 UniRef50_Q12149 Exosome complex exonuclease RRP6 n=9 Tax=Sacchar... 267 4e-70 UniRef50_A3GG05 Ribosomal RNA processing 3'-5' exonuclease n=8 T... 267 5e-70 UniRef50_A5WG76 3'-5' exonuclease n=3 Tax=Psychrobacter RepID=A5... 266 9e-70 UniRef50_A6R753 Predicted protein n=4 Tax=cellular organisms Rep... 264 3e-69 UniRef50_A6DHN3 Putative uncharacterized protein n=1 Tax=Lentisp... 264 4e-69 UniRef50_B0DUK1 Predicted protein n=1 Tax=Laccaria bicolor S238N... 264 4e-69 UniRef50_B3DN45 LD13130p (Fragment) n=14 Tax=Drosophila RepID=B3... 264 5e-69 UniRef50_UPI000186D892 conserved hypothetical protein n=1 Tax=Pe... 263 7e-69 UniRef50_A1U125 3'-5' exonuclease n=3 Tax=Marinobacter RepID=A1U... 263 8e-69 UniRef50_A9LLI7 RRP6-like protein 2 n=6 Tax=rosids RepID=A9LLI7_... 263 9e-69 UniRef50_A8NTL1 3'-5' exonuclease family protein n=1 Tax=Brugia ... 262 2e-68 UniRef50_C5FLQ1 Ribosomal RNA processing 3'-5' exonuclease n=1 T... 261 3e-68 UniRef50_UPI000180BF09 PREDICTED: similar to exosome component 1... 261 4e-68 UniRef50_Q6FA19 Ribonuclease D, processes tRNA n=19 Tax=Acinetob... 261 4e-68 UniRef50_B6DTH8 Exosome subunit Rrp6P n=1 Tax=Bodo saltans RepID... 259 1e-67 UniRef50_Q7S5A8 Related to nucleolar 100K polymyositis-scleroder... 259 1e-67 UniRef50_Q75CB2 ACL001Cp n=2 Tax=Saccharomycetaceae RepID=Q75CB2... 259 1e-67 UniRef50_C9SGG4 3'-5' exonuclease domain-containing protein n=1 ... 259 1e-67 UniRef50_A5DWN7 Putative uncharacterized protein n=1 Tax=Loddero... 259 2e-67 UniRef50_B2VXT5 Exosome complex exonuclease Rrp n=2 Tax=Pleospor... 259 2e-67 UniRef50_Q10146 Exosome complex exonuclease rrp6 n=1 Tax=Schizos... 259 2e-67 UniRef50_C4XX47 Putative uncharacterized protein n=1 Tax=Clavisp... 258 3e-67 UniRef50_C5DEP9 KLTH0C11066p n=1 Tax=Lachancea thermotolerans CB... 255 1e-66 UniRef50_A4RDR3 Putative uncharacterized protein n=1 Tax=Magnapo... 255 1e-66 UniRef50_B9I623 Predicted protein n=2 Tax=Malpighiales RepID=B9I... 255 1e-66 UniRef50_C0W1R4 Ribonuclease D n=1 Tax=Actinomyces coleocanis DS... 255 1e-66 UniRef50_C9RLF5 3'-5' exonuclease n=1 Tax=Fibrobacter succinogen... 255 2e-66 UniRef50_B8PGQ0 Predicted protein n=2 Tax=Postia placenta Mad-69... 254 3e-66 UniRef50_C8PX51 3'-5' exonuclease n=1 Tax=Enhydrobacter aerosacc... 254 5e-66 UniRef50_A7BCR3 Putative uncharacterized protein n=1 Tax=Actinom... 253 6e-66 UniRef50_D2NTT8 Ribonuclease D n=2 Tax=Rothia mucilaginosa RepID... 253 9e-66 UniRef50_B7PZE0 Exosome component, putative n=1 Tax=Ixodes scapu... 252 2e-65 UniRef50_Q7XE52 Nucleolar protein, putative, expressed n=13 Tax=... 251 3e-65 UniRef50_B4D6R3 3'-5' exonuclease n=1 Tax=Chthoniobacter flavus ... 251 3e-65 UniRef50_D0LT15 Ribonuclease D n=1 Tax=Haliangium ochraceum DSM ... 250 4e-65 UniRef50_A5DAB2 Putative uncharacterized protein n=2 Tax=Pichia ... 250 4e-65 UniRef50_B9XPC9 3'-5' exonuclease n=1 Tax=bacterium Ellin514 Rep... 250 6e-65 UniRef50_Q4DSE3 Ribosomal RNA processing protein 6, putative n=4... 250 7e-65 UniRef50_A4ALP3 Ribonuclease n=4 Tax=Actinobacteria (class) RepI... 249 1e-64 UniRef50_A6SCE7 Putative uncharacterized protein n=2 Tax=Sclerot... 249 1e-64 UniRef50_D2SEB8 3'-5' exonuclease n=1 Tax=Geodermatophilus obscu... 249 2e-64 UniRef50_UPI0001746047 ribonuclease D, putative n=1 Tax=Verrucom... 248 2e-64 UniRef50_C1E3A4 Predicted protein (Fragment) n=2 Tax=Mamiellales... 247 5e-64 UniRef50_A4IA84 Exosome subunit rrp6p homologue, putative n=3 Ta... 247 6e-64 UniRef50_C8NPA1 Ribonuclease D n=9 Tax=Corynebacterium RepID=C8N... 246 1e-63 UniRef50_Q6SGG6 Ribonuclease D, putative n=4 Tax=Bacteria RepID=... 245 2e-63 UniRef50_Q23S17 3'-5' exonuclease family protein n=1 Tax=Tetrahy... 245 3e-63 UniRef50_A8L0K3 3'-5' exonuclease n=84 Tax=Actinomycetales RepID... 245 3e-63 UniRef50_UPI0001758213 PREDICTED: similar to Rrp6 CG7292-PB n=1 ... 244 3e-63 UniRef50_D0YSP9 Ribonuclease D n=1 Tax=Mobiluncus mulieris 28-1 ... 244 5e-63 UniRef50_Q6A8V2 Ribonuclease D n=2 Tax=Propionibacterium acnes R... 244 5e-63 UniRef50_C7R4I8 3'-5' exonuclease n=1 Tax=Jonesia denitrificans ... 243 9e-63 UniRef50_C2KQ41 Ribonuclease D n=2 Tax=Mobiluncus RepID=C2KQ41_9... 242 1e-62 UniRef50_UPI000023ED22 hypothetical protein FG06049.1 n=1 Tax=Gi... 242 2e-62 UniRef50_UPI0000D56CFF PREDICTED: similar to Rrp6 CG7292-PB n=1 ... 242 2e-62 UniRef50_B0S9S6 Ribonuclease III n=6 Tax=Leptospira RepID=B0S9S6... 242 2e-62 UniRef50_B1ZWM0 3'-5' exonuclease n=2 Tax=Opitutaceae RepID=B1ZW... 242 2e-62 UniRef50_B0EQ49 Exosome complex exonuclease RRP6, putative n=2 T... 241 3e-62 UniRef50_D0MWN1 Exosome complex exonuclease RRP6-like protein n=... 241 3e-62 UniRef50_Q5KK81 PM-scl autoantigen, putative n=3 Tax=Eukaryota R... 240 5e-62 UniRef50_Q4P181 Putative uncharacterized protein n=1 Tax=Ustilag... 240 5e-62 UniRef50_D1ICW5 Whole genome shotgun sequence of line PN40024, s... 240 6e-62 UniRef50_C7M0M9 3'-5' exonuclease n=1 Tax=Acidimicrobium ferroox... 239 2e-61 UniRef50_UPI0001BC2C11 putative ribonuclease D n=1 Tax=Brevibact... 238 3e-61 UniRef50_Q8T0Z8 PM-Scl autoantigen-like protein n=1 Tax=Bombyx m... 238 3e-61 UniRef50_B6KGV1 Exosome component 10, putative n=3 Tax=Toxoplasm... 238 3e-61 UniRef50_Q09BY7 3'-5' exonuclease, putative n=2 Tax=Cystobacteri... 238 3e-61 UniRef50_B5JQC7 3'-5' exonuclease domain protein n=1 Tax=Verruco... 237 6e-61 UniRef50_A9LLI8 RRP6-like protein 3 n=5 Tax=rosids RepID=A9LLI8_... 237 6e-61 UniRef50_B2UPD3 3'-5' exonuclease n=1 Tax=Akkermansia muciniphil... 237 7e-61 UniRef50_A0LFB2 3'-5' exonuclease n=1 Tax=Syntrophobacter fumaro... 236 1e-60 UniRef50_D0WQH3 Putative ribonuclease D n=1 Tax=Actinomyces sp. ... 235 1e-60 UniRef50_Q3BSC1 Ribonuclease D n=20 Tax=Xanthomonadaceae RepID=Q... 233 7e-60 UniRef50_D1I5Y8 Whole genome shotgun sequence of line PN40024, s... 233 9e-60 UniRef50_C7MCA5 Ribonuclease D n=1 Tax=Brachybacterium faecium D... 232 1e-59 UniRef50_C0VVQ6 Ribonuclease D n=2 Tax=Corynebacterium glucurono... 231 3e-59 UniRef50_A9RMT7 Predicted protein (Fragment) n=1 Tax=Physcomitre... 230 8e-59 UniRef50_C0XSM9 Ribonuclease n=1 Tax=Corynebacterium lipophilofl... 230 9e-59 UniRef50_A7HCG7 3'-5' exonuclease n=4 Tax=Anaeromyxobacter RepID... 229 1e-58 UniRef50_C8NU72 Ribonuclease D n=1 Tax=Corynebacterium genitaliu... 229 2e-58 UniRef50_C5VCE9 Ribonuclease D n=2 Tax=Corynebacterium matruchot... 229 2e-58 UniRef50_UPI000185C37F ribonuclease D n=1 Tax=Corynebacterium am... 227 4e-58 UniRef50_C7NI77 Ribonuclease D n=1 Tax=Kytococcus sedentarius DS... 225 3e-57 UniRef50_A9U244 Predicted protein (Fragment) n=1 Tax=Physcomitre... 224 4e-57 UniRef50_C5X9Z8 Putative uncharacterized protein Sb02g034580 n=1... 224 4e-57 UniRef50_C0W3T7 Possible ribonuclease D n=1 Tax=Actinomyces urog... 224 5e-57 UniRef50_A9WRA0 Ribonuclease D n=5 Tax=Actinomycetales RepID=A9W... 222 1e-56 UniRef50_B2AKX1 Predicted CDS Pa_5_9190 n=1 Tax=Podospora anseri... 222 2e-56 UniRef50_Q5PBN9 Ribonuclease D n=5 Tax=Anaplasma RepID=Q5PBN9_ANAMM 220 6e-56 UniRef50_Q83GB8 Ribonuclease D n=2 Tax=Tropheryma whipplei RepID... 219 2e-55 UniRef50_Q6NGV4 Putative ribonuclease n=1 Tax=Corynebacterium di... 217 5e-55 UniRef50_Q2LWK2 Ribonuclease D n=1 Tax=Syntrophus aciditrophicus... 215 2e-54 UniRef50_A5EXN2 Ribonuclease D n=2 Tax=Dichelobacter nodosus Rep... 215 2e-54 UniRef50_A8QBU8 Putative uncharacterized protein n=1 Tax=Malasse... 214 4e-54 UniRef50_Q4UC54 3'-5' exonuclease, putative n=2 Tax=Theileria Re... 212 2e-53 UniRef50_A8GWM0 Ribonuclease D n=16 Tax=Proteobacteria RepID=A8G... 211 3e-53 UniRef50_C8NCR6 Ribonuclease D n=1 Tax=Cardiobacterium hominis A... 209 1e-52 UniRef50_C2CPA1 Ribonuclease D n=1 Tax=Corynebacterium striatum ... 208 3e-52 UniRef50_B3E046 Ribonuclease D n=1 Tax=Methylacidiphilum inferno... 205 3e-51 UniRef50_A7AVN6 Exosome component 10, putative n=1 Tax=Babesia b... 204 4e-51 UniRef50_B8MZK1 Exosome complex exonuclease Rrp6, putative n=2 T... 203 8e-51 UniRef50_A0EBI7 Chromosome undetermined scaffold_88, whole genom... 203 8e-51 UniRef50_C5KIT4 Ribonuclease D, putative n=1 Tax=Perkinsus marin... 199 2e-49 UniRef50_B3DSL7 Ribonuclease D n=17 Tax=Bifidobacterium RepID=B3... 198 3e-49 UniRef50_C4JWD7 Putative uncharacterized protein n=1 Tax=Uncinoc... 197 7e-49 UniRef50_C4LIZ8 Ribonuclease D n=1 Tax=Corynebacterium kroppenst... 196 1e-48 UniRef50_A6G563 Ribonuclease D, putative n=1 Tax=Plesiocystis pa... 196 1e-48 UniRef50_A9V721 Predicted protein n=1 Tax=Monosiga brevicollis R... 191 4e-47 UniRef50_C2CWJ0 Ribonuclease III n=3 Tax=Bifidobacteriaceae RepI... 188 2e-46 UniRef50_UPI0001B4D324 ribonuclease D n=1 Tax=Streptomyces virid... 186 1e-45 UniRef50_B6AIJ4 Exosome component 10, putative n=1 Tax=Cryptospo... 183 7e-45 UniRef50_D2RBB4 3'-5' exonuclease n=1 Tax=Gardnerella vaginalis ... 180 6e-44 UniRef50_A4S626 Predicted protein (Fragment) n=3 Tax=Eukaryota R... 179 1e-43 UniRef50_Q5CS61 RRPp/PMC2 like exosome 3'-5' exoribonuclease sub... 178 2e-43 UniRef50_Q4JVB6 Rnd protein n=2 Tax=Corynebacterium jeikeium Rep... 175 3e-42 UniRef50_D0RPF8 Putative ribonuclease D n=1 Tax=alpha proteobact... 174 5e-42 UniRef50_A9EXG4 Rnd protein n=1 Tax=Sorangium cellulosum 'So ce ... 168 2e-40 UniRef50_B8C5L5 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 168 2e-40 UniRef50_Q241P8 3'-5' exonuclease family protein n=2 Tax=Eukaryo... 163 8e-39 UniRef50_Q55641 Ribonuclease D n=50 Tax=Cyanobacteria RepID=Q556... 162 2e-38 UniRef50_O67779 DNA polymerase I n=4 Tax=Aquificaceae RepID=DPO1... 160 9e-38 UniRef50_Q8LMQ9 Putative nucleolar protein n=1 Tax=Oryza sativa ... 159 2e-37 UniRef50_A2EMW6 HRDC domain containing protein n=1 Tax=Trichomon... 156 1e-36 UniRef50_UPI00006CF2A3 3''''-5'''' exonuclease family protein n=... 153 7e-36 UniRef50_Q4UGW4 DNA polymerase i, putative n=2 Tax=Theileria Rep... 152 2e-35 UniRef50_B7G899 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 151 4e-35 UniRef50_Q97HU8 Ribonuclease D n=1 Tax=Clostridium acetobutylicu... 151 4e-35 UniRef50_Q31QF9 3'-5' exonuclease n=3 Tax=Synechococcus RepID=Q3... 150 9e-35 UniRef50_UPI0001C360F5 hypothetical protein ChatD1_13164 n=1 Tax... 150 1e-34 UniRef50_A2EJK5 HRDC domain containing protein n=1 Tax=Trichomon... 150 1e-34 UniRef50_A0L4G0 3'-5' exonuclease n=1 Tax=Magnetococcus sp. MC-1... 149 2e-34 UniRef50_B7FYJ7 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 149 2e-34 UniRef50_Q0BUA3 Ribonuclease D n=208 Tax=Bacteria RepID=Q0BUA3_G... 149 2e-34 UniRef50_Q23PU6 3'-5' exonuclease family protein n=1 Tax=Tetrahy... 148 3e-34 UniRef50_B8FYE5 DNA-directed DNA polymerase n=2 Tax=Desulfitobac... 146 9e-34 UniRef50_D0LTA5 3'-5' exonuclease n=2 Tax=Haliangium ochraceum D... 146 1e-33 UniRef50_C1XW54 DNA polymerase I n=1 Tax=Meiothermus silvanus DS... 146 1e-33 UniRef50_A0CQJ2 Chromosome undetermined scaffold_24, whole genom... 146 1e-33 UniRef50_A7AQX3 DNA polymerase I, putative n=1 Tax=Babesia bovis... 146 1e-33 UniRef50_Q16D56 3'-5' exonuclease family protein, putative n=10 ... 144 4e-33 UniRef50_Q69RB5 Polymyositis/scleroderma autoantigen 2-like n=3 ... 143 1e-32 UniRef50_Q04QR5 Ribonuclease D-related n=6 Tax=Leptospira RepID=... 141 3e-32 UniRef50_B7QA32 Putative uncharacterized protein (Fragment) n=1 ... 141 3e-32 UniRef50_B1X218 DNA polymerase I n=3 Tax=Cyanothece RepID=B1X218... 141 4e-32 UniRef50_Q3YR08 3'-5' exonuclease n=4 Tax=Bacteria RepID=Q3YR08_... 141 5e-32 UniRef50_Q16LC6 3-5 exonuclease n=3 Tax=Culicidae RepID=Q16LC6_A... 141 5e-32 UniRef50_Q179T2 Probable exonuclease mut-7 homolog n=2 Tax=Culic... 140 7e-32 UniRef50_B3L150 Exonuclease, putative n=6 Tax=Plasmodium RepID=B... 140 1e-31 UniRef50_A9LGS2 Ribonuclease D (Fragment) n=1 Tax=uncultured pla... 138 3e-31 UniRef50_UPI0001B79EC0 Werner syndrome homolog (human) n=1 Tax=R... 138 4e-31 UniRef50_Q1ARA6 DNA polymerase I n=1 Tax=Rubrobacter xylanophilu... 138 4e-31 UniRef50_Q7UZS1 Putative ribonuclease D n=3 Tax=Cyanobacteria Re... 137 6e-31 Sequences not found previously or not previously below threshold: >UniRef50_P09155 Ribonuclease D n=146 Tax=Gammaproteobacteria RepID=RND_ECOLI Length = 375 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 375/375 (100%), Positives = 375/375 (100%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI Sbjct: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS Sbjct: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL Sbjct: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR Sbjct: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM Sbjct: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE Sbjct: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 Query: 361 LMAEALHNLLQEYPQ 375 LMAEALHNLLQEYPQ Sbjct: 361 LMAEALHNLLQEYPQ 375 >UniRef50_C9XUE4 Ribonuclease D n=1 Tax=Cronobacter turicensis RepID=C9XUE4_CROTZ Length = 409 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 283/373 (75%), Positives = 326/373 (87%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQMITT+DALA+LCE R A+ALDTEFVRTRTYYPQLGLIQL+DGE++ALIDPL I Sbjct: 37 LNYQMITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI 96 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T+W+P +A+L+D +ITKFLHAGSEDLEVF N FG +P P IDTQ+LA+F G P+S GFA+ Sbjct: 97 TEWAPFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFAT 156 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++GV LDKSESRTDWLARPLTERQC+YAAADVWYLLPI KLM + +GWL AA+ Sbjct: 157 LVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAI 216 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +ECRLM RR EV+ P++AWR+ITNAWQLR RQLACL+LLA WRLRKARERD+AVNFVVR Sbjct: 217 NECRLMTQRRGEVLDPDEAWREITNAWQLRPRQLACLKLLAGWRLRKARERDMAVNFVVR 276 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EE+LW VAR+MPGSLGELD LGLSGSEIRFHGKTLLALV +AQ L EDALP+P+ NL+DM Sbjct: 277 EENLWKVARHMPGSLGELDGLGLSGSEIRFHGKTLLALVAQAQALLEDALPEPLANLVDM 336 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGYRK FK IK+L+ + SE HKISAEL+ASRRQINQLLNWHWKLKPQN LPELISGWRGE Sbjct: 337 PGYRKVFKEIKALVQETSEAHKISAELMASRRQINQLLNWHWKLKPQNQLPELISGWRGE 396 Query: 361 LMAEALHNLLQEY 373 L+ EAL LLQ Y Sbjct: 397 LLGEALKTLLQNY 409 >UniRef50_C6C608 Ribonuclease D n=19 Tax=Gammaproteobacteria RepID=C6C608_DICDC Length = 403 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 248/373 (66%), Positives = 302/373 (80%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+ITTDD L+ +C R P +ALDTEFVRTRTYYPQLGLIQLFDGE L+LIDPL I Sbjct: 30 LNYQLITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSI 89 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T W P +L DP++TK+LHAGSEDLEVFLN FG LP P +DTQIL AF G+P+S+GFA+ Sbjct: 90 TVWQPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLSYGFAA 149 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V +Y VTLDKSESRTDWLARPL+E+QC+YAAADV+YLLP+ +L+ ET ++GW AAL Sbjct: 150 LVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAAL 209 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DECR + R+Q+V+APE A+R+I NAWQL+ R LACLQ LADWRLRKARERD AVNF+VR Sbjct: 210 DECRQLCQRKQDVLAPEQAYREIGNAWQLKGRHLACLQKLADWRLRKARERDSAVNFIVR 269 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EEHL VARY+PGSLGEL +LGLSG EIR+HGKTLL LV + QT+ P+P++NL+D Sbjct: 270 EEHLGQVARYLPGSLGELGALGLSGPEIRYHGKTLLELVAETQTMDAAEYPEPVINLIDY 329 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PGY+KAF+ IK L+ +E +SAELLASRRQIN+LL+WHWKL PQ ++PEL+SGWRG Sbjct: 330 PGYKKAFREIKDLVQQQAERSGLSAELLASRRQINRLLSWHWKLAPQTHVPELLSGWRGR 389 Query: 361 LMAEALHNLLQEY 373 L E L +L Y Sbjct: 390 LFGEPLKGILANY 402 >UniRef50_B7VI13 Ribonuclease D n=22 Tax=Gammaproteobacteria RepID=B7VI13_VIBSL Length = 397 Score = 356 bits (914), Expect = 8e-97, Method: Composition-based stats. Identities = 174/372 (46%), Positives = 250/372 (67%), Gaps = 1/372 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++YQ+IT L +C+ R + LDTEFVRTRTYYPQLGLIQLFDGE L+LIDP+ + Sbjct: 26 VDYQIITQVKDLERVCQQAREADVVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIAL 85 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + +P +L+D S+ K LHA EDLEVF N FG P P++DTQI+AAF G +S GFA+ Sbjct: 86 DEMTPFVGLLKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFLGHGLSTGFAA 145 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V E+ GV LDKSESRTDWLARPL+++Q +YAAADV YL+P+ KL+ + +GW AA Sbjct: 146 LVSEFVGVDLDKSESRTDWLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAAQ 205 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L +R P++A+ DI AWQL+ +QLA L+ LA WRL++A +RDLA+NFV + Sbjct: 206 QESDLQVAKRIRKANPDNAYLDIKGAWQLKPQQLAILRPLATWRLKEAIKRDLALNFVFK 265 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E+ LW+VAR+ ++ G +R HG + ++V+ A+ PE+ P P+ LMD Sbjct: 266 EQDLWAVARFAMKDPKHMEQEGFDYRSVRRHGAKISSIVKLAEHTPEEEYPAPVERLMDY 325 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN-LPELISGWRG 359 PGY++ FK +K + S+ ++ E LAS++Q+NQ+L+W WK LP+++ GWR Sbjct: 326 PGYKQLFKVLKDEVKTASQHSGLATEFLASKKQLNQVLSWIWKHDRNPEKLPDVMQGWRL 385 Query: 360 ELMAEALHNLLQ 371 +++ E L+ ++ Sbjct: 386 DVVGEKLNKAIK 397 >UniRef50_D0M5H9 Ribonuclease D n=15 Tax=Gammaproteobacteria RepID=D0M5H9_VIBSE Length = 388 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 174/372 (46%), Positives = 247/372 (66%), Gaps = 1/372 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+IT + L +C R + LDTEFVR RT+YPQLGLIQLFDG L+LIDP + Sbjct: 17 VNYQIITKNKDLEEVCIHAREADVVMLDTEFVRIRTFYPQLGLIQLFDGNRLSLIDPTEL 76 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD +P A+L+D S+ K LHA EDLEVF N FG P P++DTQ++AAF G +S GFAS Sbjct: 77 TDMTPFVALLKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFLGHGLSTGFAS 136 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VEEY GV LDKSESRTDW+ARPLT++Q +YAAADV YLLP+ KL+ + +GW A Sbjct: 137 LVEEYLGVELDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYEKLLDKVTQAGWWEAVQ 196 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L+ +R V E+A+ DI AWQL+ +LA L+ LA WR R+A +RDLA+NF+ + Sbjct: 197 QESDLLVSKRIRVTNEENAYLDIKGAWQLKPSELAILKPLAMWRYREAIKRDLALNFIFK 256 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E L +VAR + ++++ + I HG + A+V++A+ P + P + LMD Sbjct: 257 EGDLLTVARLGLTNFKKMEAEDIDIRAINRHGAKIAAIVKQAKQTPSEEYPAKIERLMDY 316 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNL-PELISGWRG 359 PGY++ FK +K ++ S+ ++ E LAS++QINQL++W WK + P+L+ GWR Sbjct: 317 PGYKQVFKNMKDIVKSASQKSGLATEFLASKKQINQLISWVWKKDCDPEVLPDLMQGWRL 376 Query: 360 ELMAEALHNLLQ 371 +L+ + ++ L+ Sbjct: 377 DLLGDKMNKALK 388 >UniRef50_UPI0000E0E878 ribonuclease D n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E878 Length = 382 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 150/378 (39%), Positives = 222/378 (58%), Gaps = 5/378 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y +I + DAL C+ IA+DTEFVRTRT+YP +GL+Q++DG +ALIDP+ I D Sbjct: 5 YLLIDSYDALLQYCQQAAQQSVIAVDTEFVRTRTFYPHIGLVQIYDGVDIALIDPIAIDD 64 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 SPL ++ +P + K LHA SEDLE F G +P+PL DTQ+ A G S G+ +V Sbjct: 65 LSPLSQLMTNPQVIKVLHACSEDLETFEFALGVMPEPLFDTQVAAQLAGLGNSVGYGRLV 124 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E +TL+K ESRTDW+ RPL+ Q YAA DV YLLP KL + EAS L DE Sbjct: 125 ELLQDITLEKGESRTDWIRRPLSPEQLIYAAEDVLYLLPCYFKLAEKLEASQQLHWVYDE 184 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + R++ + P+ A+ + N W+L L +QLLA WRL ARE D+ NF++RE+ Sbjct: 185 VNQLIRRKRANIDPKHAYLLLKNTWKLSPLNLYAMQLLAQWRLTFAREHDITQNFILREQ 244 Query: 243 HLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 ++ +A +PG G L +L + E R H T+L +++ A+ PE P + + D+P Sbjct: 245 SMFDIASCLPGHKGALFALDVVTPQEARRHCDTILGIIKTARQAPESDYPDAVQRITDVP 304 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN----LPELISGW 357 Y+K AIK++ ++ +++ + + AS+RQINQ+++W P+L+ GW Sbjct: 305 LYKKHVAAIKAICSEAAQSVGVDSTYFASKRQINQVVSWFVFAFDDTRALGMEPDLLVGW 364 Query: 358 RGELMAEALHNLLQEYPQ 375 RGEL+ + L Q + + Sbjct: 365 RGELVGAKITALAQHFTR 382 >UniRef50_Q0F2Y2 Ribonuclease D n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2Y2_9PROT Length = 398 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 111/372 (29%), Positives = 186/372 (50%), Gaps = 1/372 (0%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + I T D L + + +DTEF R T+YP+ L+Q++ +IDP+ I D Sbjct: 6 IEFINTPDQLRQAAATMAECQVLCVDTEFHRESTFYPEFALLQIYGNGQCWVIDPITIKD 65 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +P+ I+ +P+I K HA +D+E+ N G LP PL DTQ+ AA G GF ++V Sbjct: 66 LAPVWDIMLNPAILKVFHAARQDIEIIFNEAGGLPLPLFDTQVAAALLGYGQQVGFGNLV 125 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + + L K ES TDW ARPLT++Q YAA DV +L+P+ L EA+ +E Sbjct: 126 QRITKKLLPKGESFTDWKARPLTKKQMAYAADDVIWLMPVFQHLKERLEAAKRTQWLQEE 185 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + + DA+ + +L+ R LA LQ +A WR R A++RD+ ++ +E Sbjct: 186 QQTLCSPETYQPNDADAFWRVKGFNRLKGRHLAVLQEMAAWRERSAQQRDIPRRRMIADE 245 Query: 243 HLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L +AR + + + G++ I+ G ++A ++ E++ P + Sbjct: 246 PLLELARRDLLDIETMQRIRGINAGFIKRFGDEIIACWQRGMERTEESWPSMEARRSNTH 305 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 G + + +L+ +E +IS +LAS+ ++ L +W ++ K + + GWR EL Sbjct: 306 GTDLRLEMLDTLVRLKAEEGEISGTILASKSDLSALASWGYRCKGEPPEVACLHGWRYEL 365 Query: 362 MAEALHNLLQEY 373 + L LL+ Sbjct: 366 VGHDLIRLLRGE 377 >UniRef50_A5F6R9 Ribonuclease D n=31 Tax=Vibrio RepID=A5F6R9_VIBC3 Length = 381 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 176/370 (47%), Positives = 248/370 (67%), Gaps = 1/370 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NYQ+I+ L +C A R + LDTEFVRTRT++PQLGLIQ+FDGE+L+LIDP + Sbjct: 9 VNYQIISQVGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL 68 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + +P +L+D S+ K LHA EDLEVF N FG P P++DTQI+AAF G +S GFA+ Sbjct: 69 DEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA 128 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V++ V LDKSESRTDWLARPL+++Q EYAAADV+YLLP+ KL+ + +GW AAL Sbjct: 129 LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVEQVTQAGWWDAAL 188 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L +R +V PE A+ DI AWQL+ ++LA L+ LA WR +A RDLA+NFV++ Sbjct: 189 QESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIK 248 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E L +++R S ++ G+ IR H ++A+V+ A P DA P ++ +M+ Sbjct: 249 ETDLLTISRLALRSPKRMEEEGVDPHAIRRHSSKIIAMVKTALETPADAYPPEIVPIMEY 308 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWK-LKPQNNLPELISGWRG 359 PGY++ FK +K + VS T ++ E LAS++Q+NQLL+W WK + LP+L+ GWR Sbjct: 309 PGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRL 368 Query: 360 ELMAEALHNL 369 L+ E L+ L Sbjct: 369 PLLGEKLNTL 378 >UniRef50_A0YC02 Ribonuclease D n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC02_9GAMM Length = 384 Score = 336 bits (862), Expect = 9e-91, Method: Composition-based stats. Identities = 131/370 (35%), Positives = 202/370 (54%), Gaps = 3/370 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++ I ++ L C + +ALDTEF+RT T+YP L+Q+ +G LIDPL I Sbjct: 11 VHPVYIDDNETLRKFCLQWQHAAVLALDTEFIRTDTFYPIGALLQISEGTGCFLIDPLSI 70 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D+SPL A+L DP+I K LH+ SEDLEVF +F LPQPLIDTQI A G S G+ Sbjct: 71 DDFSPLTALLTDPAIVKVLHSCSEDLEVFERLFQVLPQPLIDTQIAAGLDGYGFSLGYQK 130 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 M E + + K E+R++WL RPLTE Q YAA DV YL + +L E+ G L Sbjct: 131 MTEALLQIHVAKGETRSNWLQRPLTESQIHYAALDVAYLPEMYQQLKQSLESKGRWQWLL 190 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DEC + + + A ++ + + W+L +RQL L+L+ +WR +AR RD +++ Sbjct: 191 DECSPLTNGQSDTDAITQYYKKVKSVWKLSSRQLGVLRLVVEWRESEARHRDRPRGRILK 250 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ + +AR P + L S+ + S +R +G+ LL LV L E LP + + Sbjct: 251 DKSCFEIARTQPRDVKALSSIEDVGQSTLRNYGQELLKLVMTGIKLAESELPAQLPKPLP 310 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P K +K+ ++ +E +++ ELL +R +LL + + LP + GWR Sbjct: 311 -PQTGTLLKQLKAHVSHRAEHLQMAPELLVRKRDYEELLRSGFNNRD-YQLPASLCGWRK 368 Query: 360 ELMAEALHNL 369 +++ + L N+ Sbjct: 369 DVIGDDLLNI 378 >UniRef50_Q15S24 Ribonuclease D n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15S24_PSEA6 Length = 400 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 159/374 (42%), Positives = 228/374 (60%), Gaps = 5/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Y ITTD+ L + C + AIA+DTEFVRTRT YPQLGLIQ++DG+ +ALIDPL I Sbjct: 11 VQYISITTDETLNAYCAQLAKAQAIAVDTEFVRTRTLYPQLGLIQIYDGQQIALIDPLEI 70 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +D++ LKAIL D +I K LH+ SED+E F+ +P+P+ D+Q AA G S G+A Sbjct: 71 SDFTALKAILTDENIVKVLHSCSEDIETFICALDIVPRPIFDSQFAAAITGMGPSLGYAK 130 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE + +DK ESRTDWLARPL+ +QC+YAA DV YL + L +T A G Sbjct: 131 LVEVMLDIQVDKGESRTDWLARPLSPKQCQYAAYDVLYLFQLYPTLCDKTLAQGRQAWVF 190 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + ++ V E + +I N W + + L LQ L WR ++A++RDLA+NFVVR Sbjct: 191 AEMENLTRKKLSQVPYELLYLNIKNNWHVTGKSLYVLQQLTAWRAKEAQQRDLALNFVVR 250 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 E +L VA+ +P S L + GL+ EIR +G+ +L +V A+ + E A PQP+ L+D Sbjct: 251 EANLVEVAKRLPASKNALHQISGLTPQEIRINGQAMLDIVAAAEHVDESAYPQPVERLVD 310 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN----LPELIS 355 ++K A++ + +E + EL+ S++QINQL+ W W L LP+L+ Sbjct: 311 FSRFKKVAAAVRQVCVQTAEKLGVPVELIGSKKQINQLIKWCWFLDDDTRAQGLLPDLLE 370 Query: 356 GWRGELMAEALHNL 369 GWRGE + AL + Sbjct: 371 GWRGEHLQAALAKV 384 >UniRef50_Q47YC8 Ribonuclease D n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YC8_COLP3 Length = 379 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 155/376 (41%), Positives = 235/376 (62%), Gaps = 4/376 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+I +L +LCE + +A+DTEFVRTRT Y +LGL+Q+ DGE LALIDPL I Sbjct: 1 MHYQLIEDQKSLNNLCEQLVKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLAI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +P A+L + +ITK LHA SEDLEVFL P LID+QI+ +F G +S G+A+ Sbjct: 61 DDLAPFWALLTNENITKVLHACSEDLEVFLTAGNCKPVNLIDSQIMMSFLGHGLSLGYAA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MV+ ++ + LDKSESRTDW RPLTE+Q +YA+ADV +L I KL+ E +G+L A Sbjct: 121 MVKHFTDIELDKSESRTDWTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGFLAYAQ 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + M ++ + + + +I W+L +QL L+ LA WR ++A++RDL + FV + Sbjct: 181 IETQSMIDKKFTPIIESEMYLNIKMNWRLNPKQLNLLKYLASWRFQQAKKRDLPLGFVAK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + L ++A+ P S+ + +L G+ +IR GK +LA++ +A+ + P + L + Sbjct: 241 DHTLMALAQSNPESVNAMLTLEGVETLDIRHKGKAMLAVLSQAEQAEVSSYPDKIDRLDE 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP---ELISG 356 PGY++ FK +K+ + SE ++ E +AS++QINQ L W + L N +LI+G Sbjct: 301 YPGYKQIFKKLKTFLITASEQQGLAIENVASKKQINQFLTWQFDLNDARNSSAKVDLITG 360 Query: 357 WRGELMAEALHNLLQE 372 WR EL + L + Q+ Sbjct: 361 WRYELFGQTLLDFAQQ 376 >UniRef50_C0N8D2 Ribonuclease D n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N8D2_9GAMM Length = 379 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 110/374 (29%), Positives = 188/374 (50%), Gaps = 9/374 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Q I + L LCE + +A+DTEF R +TYYPQL LIQ+ + + +A +DPL I Sbjct: 1 MTIQFIDSSAGLKDLCEQLAESTWLAIDTEFHREKTYYPQLCLIQVANDDVIACVDPLKI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SPL + +T HA +DLE+ + LPQ + DTQ+ A G G+ + Sbjct: 61 DDLSPLMDVFYRTDMTLVFHAARQDLELLFLLRDALPQQVFDTQLAATVLGYGDQIGYGN 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V++ V LDK+ +RTDW RPL+ Q +YAA DV YL + +L + +G + Sbjct: 121 LVKQCLNVDLDKAHARTDWRQRPLSPEQIDYAADDVRYLRELYHQLEAKLVDTGRINWLK 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++ + PE +W I + +L++ QLA LQ L WR ++A +++L ++++ Sbjct: 181 EDFATLSATETYQSNPESSWLRIKGSGRLKSSQLAVLQQLGVWREQRAIKQNLPRRWIIK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ + +AR+ P SL ++ + GL +I HG+ +L +E + +P++ P Sbjct: 241 DDVMLDLARFSPSSLDAMNKIRGLESRDIDRHGQAILKAIEAGKAVPQEQWPVMKRPQPL 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 A+ L+ + + I+ +A+R+ I L+ + + GWR Sbjct: 301 SNQQDALVDALMGLLRKLCDEQTITPVAVATRKDIEALVR--------DQDSPIKHGWRH 352 Query: 360 ELMAEALHNLLQEY 373 E++ + L L Sbjct: 353 EIVGQKLEQFLAGE 366 >UniRef50_B9CJZ2 Ribonuclease D n=2 Tax=Atopobium RepID=B9CJZ2_9ACTN Length = 376 Score = 331 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 180/369 (48%), Gaps = 7/369 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 I+T + L S C P +A+DTEF+R +TYYP+L L+Q+ GE +A IDPL I D S Sbjct: 2 YISTQEELISFCLRAAHVPVLAVDTEFLREKTYYPKLCLVQVSTGEEIAAIDPLSIDDLS 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL + D I K +HA S+DLEV L P+ DTQ+ AAF G +AS+VE Sbjct: 62 PLVRLFEDQKIVKVIHACSQDLEVLLYGMHCACAPVFDTQLAAAFLGMRQQASYASVVEH 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y GV L K+ES TDW RPL Q YA DV YL I + + L + E Sbjct: 122 YMGVHLPKTESLTDWSRRPLDPEQLVYAEDDVRYLPDIYRCMYERLMKTNRLGWLMPEMN 181 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 P++A+ + + L RQ+A + + WR +A + ++ +++ +E L Sbjct: 182 AYTAPENFKRDPKEAYLHLKRSNSLTRRQMALAREICAWREERAAQHNIPRKWIISDETL 241 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 + + P + L + + S + ++LA ++ +++P + P + G Sbjct: 242 VEICKRSPATSERLKRIRGTESLSQESVASILAAIKVGRSIPPEECPVIEHHSRPAAGSE 301 Query: 305 KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE 364 + + +L+ VSE I+ +L+A++ + LL Q +L GWR EL+ + Sbjct: 302 GVLELMYALVKIVSEKEGIAPQLIANKNDLADLLA-------QKKDSKLSCGWRHELVGK 354 Query: 365 ALHNLLQEY 373 L LL Sbjct: 355 QLQGLLAGE 363 >UniRef50_Q3ICG4 Putative RNase D, processing tRNAs n=3 Tax=Alteromonadales RepID=Q3ICG4_PSEHT Length = 376 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 153/374 (40%), Positives = 227/374 (60%), Gaps = 5/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+I T + L + E ++ P +A+DTEF+R RT YP++ LIQ++DGEHLALIDPL Sbjct: 1 MHYQLIETQNQLNTFVEQIKNKPVLAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLAE 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 IL+DP++ K H+ SED+EVF G +P PL DTQ G GFA Sbjct: 61 LSLFDFWQILKDPAVLKVFHSPSEDIEVFQKYAGFVPTPLFDTQFALQILGEGNCMGFAL 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MV+ + +DKSESRT+WL RPLT +Q EYAAAD ++LLP ++ +A+ + Sbjct: 121 MVKTLLDIEIDKSESRTNWLQRPLTNKQLEYAAADAYHLLPCFNLIIDSVKAADLFNIVI 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E L+ +R+ E ++DI NAWQLR +LA L+ LA WR KA ++LA+NFV++ Sbjct: 181 SESELVANKREFQTPDELLYKDIKNAWQLRPHELAILRELAVWRRNKAIRKNLALNFVLK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 E ++ +A+ P SL L + G+ E+ G +L +E+A+ LPE+ P + L+D Sbjct: 241 EHNMTEIAKRGPASLNALRQIPGVEAIEVNRSGVEILKCIEQAKALPEEQHPAILKRLID 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL----KPQNNLPELIS 355 P Y+K K IK I V++ H I +++AS++Q+NQL++W+WKL K Q+ P+L+S Sbjct: 301 FPSYKKVAKEIKQKINKVAKEHNIPEDVMASKKQVNQLISWNWKLSAAQKEQHIKPDLLS 360 Query: 356 GWRGELMAEALHNL 369 WR + + L Sbjct: 361 SWRYSFVKDTLKEW 374 >UniRef50_B8F419 Ribonuclease D n=8 Tax=Pasteurellaceae RepID=B8F419_HAEPS Length = 375 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 168/371 (45%), Positives = 239/371 (64%), Gaps = 3/371 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + YQ + + +LA +C V IALDTEFVRTRTYYP+LGLIQLFDG+ + LIDPL I Sbjct: 5 IEYQWVDDNPSLAQMCLQVAEQSVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPLSI 64 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD+SP A+L + ++ K LHA EDLEVF + F +LPQP++DTQ++A F G +S GFA Sbjct: 65 TDFSPFTALLANENVLKVLHACGEDLEVFQHYFKQLPQPMLDTQVMAGFVGLGISIGFAK 124 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + Y V LDK SRTDWL+ PL+E Q +YA ADVWYLLPI KL + + W A + Sbjct: 125 LALHYLEVELDKGASRTDWLSHPLSEIQLQYACADVWYLLPIYHKLAEDLAKTPWQTAVV 184 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC + +RQ V P A+++I+NAWQL ++LA LQ+LA WR+ +A +RDLA+NF+++ Sbjct: 185 EECATLLAKRQIVEDPNKAYKEISNAWQLNQQELAILQILAKWRIEEAEKRDLALNFIIK 244 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E+ L +A+ P L + +E+R HGK +L LVE+ + + + P + L+D Sbjct: 245 EQSLLQIAKLQPKHTSILLEF-MHPNEVRIHGKKILWLVEQGKQILPENYPPVIRRLVDE 303 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 GY+ FK ++ +T+V ++ ELLAS+RQ+NQL W+ + + LPEL+ GWR E Sbjct: 304 AGYKTTFKRLQKRLTEVCPE-NLAIELLASKRQLNQLFKWYRNGQDRQKLPELLCGWR-E 361 Query: 361 LMAEALHNLLQ 371 L + Sbjct: 362 QFGNKLLPEID 372 >UniRef50_C5BMI8 Ribonuclease D n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BMI8_TERTT Length = 393 Score = 328 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 201/374 (53%), Gaps = 8/374 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q ITT L + C+ +A+DTEF+R++TYYP GLIQ+ DG LIDPL D+ Sbjct: 11 QWITTAAELKACCDKWITQRMLAVDTEFMRSQTYYPITGLIQVNDGNTSYLIDPLAFDDF 70 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL ++ +P + K LH+ SEDLEVF G +P+ ++DTQI +A CG S GF +V Sbjct: 71 TPLAELMENPGVLKVLHSCSEDLEVFHRFLGIVPKHMLDTQIASALCGYGFSVGFGKLVH 130 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 G L K E+R+DWL RPL+ Q +YAA DV YL + + L+++ + G L ++C Sbjct: 131 AVLGEELPKEETRSDWLHRPLSSAQIDYAAIDVEYLYKLASILVLKLKNLGRLTWVAEDC 190 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 M + + A +++ I AW+L RQLA L+ LA WR A+ RD+ N V++E Sbjct: 191 EAMLRQFADNQAVDNSDARIKQAWRLSQRQLAILKKLAQWREEVAQRRDVPRNRVIKEHS 250 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +A+ P + +L L G++ IR G L+A ++ +PE LP P+ + Sbjct: 251 LLDLAQRTPDHVAQLRKLDGINERMIRTDGADLIACIQAGMDVPEHELPAPLPRPL-SGS 309 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKP------QNNLPELISG 356 K K ++ ++ +E +++ E+L +R L + L E ++G Sbjct: 310 ENKWAKTVREKVSSEAERLQLAPEILLKKRDYEALTRAFMTPDDINQQIIEARLAEYLTG 369 Query: 357 WRGELMAEALHNLL 370 WR L+A L ++ Sbjct: 370 WRYNLLAAPLAKVI 383 >UniRef50_A4BJR0 Ribonuclease D n=1 Tax=Reinekea blandensis MED297 RepID=A4BJR0_9GAMM Length = 380 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 198/371 (53%), Gaps = 4/371 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Q I + ALA + + A IALDTEFVRT ++Y LGLIQ+ + + LIDPL I Sbjct: 4 QFQWIDNNAALAQVADEWAAASVIALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQIN 63 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 DW+PL +L DP+I K LHA SED EV + G Q + DTQI A F G P+ +A + Sbjct: 64 DWAPLVRVLSDPAIVKVLHALSEDAEVLAHHLGVELQNVFDTQIAAGFLGHPVQMSYARL 123 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE V L K +R+DWL RPL + QC YAAADV +L + + + + Sbjct: 124 VEAICDVELPKEATRSDWLQRPLADEQCFYAAADVLWLYRVYQHCAAQLKEQNRYAWVAE 183 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + M + V P+ ++ + AW+L+ +L LQLL +WR AR + ++++ Sbjct: 184 DSQRMVSNNRPVP-PQSYYQKLRGAWKLKGERLLVLQLLCEWRENLARATNSNRGRILQD 242 Query: 242 EHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L ++A MP S L + + +IR +G L+A++E+A+ + P+ + + + Sbjct: 243 KDLITLAEKMPTSRSMLQKQVNIPSRKIRLYGDELIAMIERARDSRREDWPERIDSPLP- 301 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 + K ++ ++ V+E + AE+LA R+ + L + +P++ +GWR E Sbjct: 302 ADQAQLLKDVRQVVNTVAEQLNLPAEILARRKSLEAWLRSGARTGD-YEVPDIFTGWRQE 360 Query: 361 LMAEALHNLLQ 371 + + + ++ Sbjct: 361 FLVDPISQCIR 371 >UniRef50_B8GL88 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GL88_THISH Length = 396 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 122/370 (32%), Positives = 192/370 (51%), Gaps = 9/370 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 + I T + LA+ C + IALDTEFVR +TYYP+L L+Q+ + LA IDP+ + Sbjct: 13 EIRFIDTAEGLAAFCGEIAGAQWIALDTEFVREKTYYPRLCLVQVATPDALACIDPIALP 72 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D PL A+L DP++TK +HA +D+E+ L G +P P+ DTQ+ + G G+A M Sbjct: 73 DLGPLAALLHDPAVTKVVHAAHQDMEILLQSTGRVPTPVFDTQVAVSLLGHGDQIGYARM 132 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V+ Y + LDK +RTDW RPL Q YAA DV +L + ++ + E G L + Sbjct: 133 VQIYLDLELDKGHTRTDWSQRPLETAQLRYAADDVRHLARVYPMILKDLEEKGRLDWLSE 192 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + + + P++AWR I L+ QLA LQ LA WR R+A E+DL +++ + Sbjct: 193 DFAAISEESRYLPDPDNAWRRIKGQKYLKGAQLAVLQALAAWRERQAMEKDLPKRWILSD 252 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD- 299 + L +++ P L L + GL ++ HG+TLLALV +A++LP A P Sbjct: 253 DVLTELSQRSPTDLASLAKVRGLEDKTLQRHGETLLALVREARSLPASAWPARPGPSRGI 312 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P + + L+ + + IS +A+R+ + L + L+ GWR Sbjct: 313 GPEHEELVDVAMGLLRHQARINDISPAAIATRKDLEALFR-------EEPDCALLQGWRA 365 Query: 360 ELMAEALHNL 369 + + + Sbjct: 366 RIAGRVILDW 375 >UniRef50_B8FEX5 3'-5' exonuclease n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FEX5_DESAA Length = 388 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 160/376 (42%), Gaps = 4/376 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ ++ D+ALA L +++++ IA+D E Y + L+Q+ ++DPL Sbjct: 14 DFVLVDNDNALADLTQSLQSQKCIAVDLEADSMFHYQEKACLLQITSNGLNYIVDPLCDC 73 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L IL + I K H D+ FG L DTQ+ A F G P + G A + Sbjct: 74 DVKALAPILENDEIQKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGEPQT-GLAPL 132 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 +E GV L+K + +W RPL YAA D +LL + L E L + Sbjct: 133 LESRFGVQLEKKYQKKNWSLRPLPPEMMAYAANDTVHLLELAEILKKELVEKDRLFWVEE 192 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 EC ++ R + A +L R L L+ + R A++ + + V+ Sbjct: 193 ECEILTHARPMPPNDGPLFLRFRGAGKLDPRSLQVLENILHVRDDLAKKWNRPLFKVLGN 252 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLM 298 + +A+ P + L SL G S + + G L+ ++ +++P++ LP Sbjct: 253 TPILEMAQKRPLNTKGLVSLHGFSPKQAKMFGHELIRAIKAGKSVPDEKLPSYPRKKRPP 312 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 P K K +K + E + + ++ + QI + + + + + + + W+ Sbjct: 313 LNPKAPKRAKVLKDWREKMGEELGVESSVVLTNAQIQAMASNKPRSIRELDECQEVRQWQ 372 Query: 359 GELMAEALHNLLQEYP 374 ++ + L LL+ P Sbjct: 373 KKVFGQTLVELLKAVP 388 >UniRef50_B5JVS3 Ribonuclease D n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVS3_9GAMM Length = 384 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 117/373 (31%), Positives = 198/373 (53%), Gaps = 8/373 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 + Q I +L +LC+ + + LDTEF+R +TYYPQL LIQ+ + + +A IDPL I Sbjct: 3 DIQYIQDTASLKTLCQQLAGSEWLTLDTEFLREKTYYPQLCLIQIANHDLIACIDPLAID 62 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D +PL A+L D SI K LHA +D E+ + P+P+ DTQ+ A+ G G+A + Sbjct: 63 DLTPLYALLHDESIVKVLHAAVQDQEILYQSSQQPPKPVFDTQVAASLLGYGDQMGYAKL 122 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE+ GV LDKS+SRTDW RPL E+Q +YAA DV +L I L E E G Sbjct: 123 VEKICGVQLDKSQSRTDWSRRPLNEKQIDYAADDVRHLREIYQHLKTELERLGRSDWLQK 182 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + ++ P+ A++ + +LR +QL L+ LA+WR ++A +++ ++ + Sbjct: 183 DFDDLANPQRYDPDPDSAYKRVKQYRRLRPKQLVILKALAEWREKRAMDKNKPRKWIASD 242 Query: 242 EHLWSVARYMPGSLGELDSLGL-SGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L + + P ++ E+ L S ++ G+ +L L++ AQ P++ P Sbjct: 243 DLLMDLCKIQPKTVAEIGQLRSASEGFVQHQGQYILDLMQSAQQTPQEQWPVLPSYQALT 302 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P + + +++ + I+ L SR+Q+ QL+ + + L+ WR Sbjct: 303 PNQEAQVDYLMAAAKLIADDNNITTGSLVSRKQLEQLVQGNRDI-------PLMKSWRYT 355 Query: 361 LMAEALHNLLQEY 373 ++ ++L NLL+ + Sbjct: 356 VLGQSLVNLLEGH 368 >UniRef50_C4K3X6 RNase D, processes tRNA n=9 Tax=Enterobacteriaceae RepID=C4K3X6_HAMD5 Length = 387 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 190/374 (50%), Positives = 261/374 (69%), Gaps = 1/374 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NY++ITT++ L +CE A+ALDTEFVRT+TYY +LGLIQL+DG ++LIDP I Sbjct: 12 LNYRLITTNEDLHHICELAVLRKAVALDTEFVRTKTYYAELGLIQLYDGHRVSLIDPFLI 71 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 T+W+P +L++ I KFLH+ ED+E+F + F LP+PLID+QILAAF GRP+S GF+ Sbjct: 72 TEWAPFYCLLKNKKIVKFLHSAGEDIEIFFHFFKTLPEPLIDSQILAAFTGRPVSCGFSI 131 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+E+ G+ L+K+ESRTDWLARPL+++QC+YAA DV+YLLP+ LM + E SGW+ A Sbjct: 132 LVKEFQGIVLNKAESRTDWLARPLSQKQCDYAAEDVFYLLPLANALMKKIETSGWMEAVK 191 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC L+ RR ++ PE A+RDI NA QL QL CL+ LA WRL AR++++A+NFV++ Sbjct: 192 EECELLCQRRSQIQDPEMAYRDIGNASQLNPGQLICLKKLASWRLVYARKKNVAINFVIQ 251 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E +LW VARY P SL EL LGL IR HG TLL LV ++Q ED + L Sbjct: 252 ESYLWKVARYQPTSLSELFHLGLDRRTIRQHGLTLLGLVTESQKTKEDPS-LVIAYLNHE 310 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P Y+K FK IK LI + +S EL+ SR+ INQLLNWH+ L P+ P L++GWR + Sbjct: 311 PVYKKIFKEIKDLIQSIGALIGLSHELIGSRKHINQLLNWHFGLIPKEKRPLLLTGWRAQ 370 Query: 361 LMAEALHNLLQEYP 374 +++ L +L +P Sbjct: 371 VLSLELTKILDRHP 384 >UniRef50_Q605A6 Ribonuclease D n=1 Tax=Methylococcus capsulatus RepID=Q605A6_METCA Length = 388 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 122/371 (32%), Positives = 191/371 (51%), Gaps = 9/371 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 I + LA+ C ++ P IA+DTEF+R +TYYP+ L+Q+ +G A IDPL I D Sbjct: 9 INYIDSPAELAAFCRSIGGSPWIAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLAIED 68 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 ++ +L + +ITK HA +DLE+F + F +P P+ DTQ+ A G P G+AS+V Sbjct: 69 LREVECLLFNRAITKVFHAARQDLEIFFHRFRAVPAPIFDTQLAAPLVGHPEQVGYASLV 128 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 GVT+DK +RTDW RPL+ Q EYAA DV +L + ++ + E G +DE Sbjct: 129 SAMLGVTVDKEHTRTDWSQRPLSAAQKEYAANDVIHLAALYPRMREQLERLGRYAWLVDE 188 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ V PEDAW+ I +L+ Q A LA WR A++ DL N+++R+E Sbjct: 189 FAALEEPDLYVNRPEDAWQRIGGLDRLKPEQFALAVRLAAWRENTAQQNDLPRNWILRDE 248 Query: 243 HLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L +A P + L +L G+ ++ +G ++ALV+ A + PQP Sbjct: 249 ALLEIALRRPRNRDALQALRGIDSRMVQRYGDAMIALVQDA-GSGQAVPPQPRRGQRRSA 307 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 A+ +L+ H I+ ++ASR+ + +LL + +++ GWR L Sbjct: 308 QTEAILDAMSALVRLRCIEHTINPAVVASRKDLEELL-------ESPDGAKVLHGWRRAL 360 Query: 362 MAEALHNLLQE 372 + L L Sbjct: 361 VGNDLRAFLAG 371 >UniRef50_A5G9G2 3'-5' exonuclease n=8 Tax=Desulfuromonadales RepID=A5G9G2_GEOUR Length = 409 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 4/371 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I AL L E + +A D E Y ++ LIQ+ ALIDPL D S Sbjct: 38 IIEDQQALNRLVERLNTETTLAFDLEADSLHHYTEKVCLIQVSTNSETALIDPLAPLDLS 97 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL IL +P++ K H D+ FG + L DT I + F G G A+ +++ Sbjct: 98 PLAPILANPAVRKVFHGADYDMRSLYRDFGFEVRNLFDTMIASQFLG-EKEVGLAAALKK 156 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 GV LDK + DW RP + + EYA D L+ + +L E A G L +E Sbjct: 157 RFGVELDKKYQKADWSKRPFSPQMIEYAMKDTSLLIKLYLQLEDELRAKGRLAWVEEESE 216 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 ++ R E + A +L+ R LA L+ L +R +AR+RD+ ++ E L Sbjct: 217 IVSCVRAASRDNEPLFLRFKGAAKLKPRSLAVLEKLLLFRDERARKRDVPPFRILGNEPL 276 Query: 245 WSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLMDMP 301 +A +P + +L + G+S I +G+ +L +V + ++P + LP + ++ Sbjct: 277 RELAELLPRTAADLTGIPGISQKLIDTYGREILNVVAQGLSIPAEKLPHYPTVQRVIKDR 336 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 + K +K +S ++A+ + L + + W+ + Sbjct: 337 YQEERLKRLKEWREGKGAALGLSVGIIANNSLLEALSEAAPDSLEKLAGIPGLKRWQKQE 396 Query: 362 MAEALHNLLQE 372 L +LL+ Sbjct: 397 FGAELLDLLKN 407 >UniRef50_C7RC18 Ribonuclease D n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RC18_KANKD Length = 384 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 197/373 (52%), Gaps = 2/373 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++ + ++ + L LC++ A +A+DTEF RT TY+ +L LIQ++DG+ + LIDPL Sbjct: 13 VHVETVSDPERLQELCQSWLALKELAVDTEFDRTNTYFHRLALIQIYDGKEIYLIDPLAF 72 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L + S+ K LH+ SEDLE + +G + DTQI A+ G +S G+ + Sbjct: 73 DDLSALTELFASTSVVKALHSCSEDLEALYHQYGFEFNQVFDTQIAASLDGIGLSVGYGN 132 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE + V LDK ++TDWL RPL++ Q YAA DV YL+P+ +L G + Sbjct: 133 IVEHFLSVVLDKEHTKTDWLQRPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKGLFECVI 192 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++ + + +A+ + A++L QL LQ LA WR AR+ ++ FV R Sbjct: 193 EDVNSIFAAIIQADDYAEAYLKVKGAFRLNQFQLNRLQKLAQWRETLARDNNIPKTFVFR 252 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + HL V++ S+G+L S+G IR +G ++ +E A + ++ P+P+ + Sbjct: 253 DHHLIEVSQKEKTSIGDLLSMGCHRGSIRKYGAEMIHQIELADQVDKEQWPEPLQPFHKI 312 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P + F A+K+ + V+ + I AE L +RR I + K + N + WR Sbjct: 313 PKSKAMFNALKAEVEKVANLNSIPAEALCNRRLIEYYIKMTLGFKGRPN--RFWNSWRQR 370 Query: 361 LMAEALHNLLQEY 373 L+ E +QE+ Sbjct: 371 LLEEPFKQAMQEF 383 >UniRef50_B3PKH0 Ribonuclease D n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PKH0_CELJU Length = 378 Score = 323 bits (827), Expect = 9e-87, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 202/370 (54%), Gaps = 3/370 (0%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 I D LA LC R AIA+DTEF+RT T+YP GL+Q+ DG+ LIDPL I DW Sbjct: 8 IWIERADQLAELCVGWRQQGAIAVDTEFMRTDTFYPIAGLLQIGDGKGCYLIDPLAIADW 67 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL+ +L D + K LH+ SEDLEVF +P PL DTQI AAF G+A++V+ Sbjct: 68 QPLRELLLDGKVIKVLHSCSEDLEVFQRWLDLVPSPLFDTQIGAAFANLGFGLGYANLVK 127 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 G+ + K E+R+DWL RPL++ Q +YAA DV ++L + KL+ + S L +C Sbjct: 128 TLLGIEIPKDETRSDWLQRPLSQSQLKYAALDVAHMLVVYGKLLQILKTSQRLEWVKSDC 187 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + +DA++ + AW+LR ++LA L+ L WR +AR+RD+ N +++E Sbjct: 188 ADLVEQARAPDHFDDAYQKVGFAWKLRPQELAVLRQLCIWRETQARQRDIPRNRLIKEPS 247 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 LW +AR P L +L + + +R G+TLLA+ + P+ + + Sbjct: 248 LWDIARKKPRDLQQLQQIADIPQRTLRNDGETLLAITKSQLESEPSTWPERLDPPL-AQS 306 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 KA+K + D ++ I AE+L +++ ++ K LPE + GWR L+ Sbjct: 307 EGPLLKALKQFVRDKADAELIPAEVLIRKKEYEAIVRSGMKGGD-YRLPERLKGWRYTLI 365 Query: 363 AEALHNLLQE 372 E L + Q+ Sbjct: 366 GEGLLQVAQD 375 >UniRef50_B9ZRL3 Ribonuclease D n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZRL3_9GAMM Length = 392 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 114/375 (30%), Positives = 186/375 (49%), Gaps = 8/375 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ +I T +AL + +++ IALDTEF+R +TYYPQL L+Q + LA IDPL + Sbjct: 3 DHGLIETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPLRL- 61 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L + RDP ITK HA S+D+E+ G +P P+ DTQI A+ G G+A++ Sbjct: 62 DIQQLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASMLGYGEQVGYANL 121 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V+ LDKS++RTDW RPL+ Q YAA DV +L + +L+ E + + Sbjct: 122 VKTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELDTHDRMHWLRP 181 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 E + PE +W+ ++ +L+ ++ L+ +A WR R A+ + +V+ + Sbjct: 182 EMEALSNPALYEPDPEQSWQRVSGVKRLKPKERGVLKCVAAWRERTAQSSNRPRRWVLSD 241 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIR-FHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L +AR P L L ++ H ++LLA + + Q LP + PQ Sbjct: 242 DLLLDIARRTPADAQGLRELRQFPGGMKPEHTESLLAAIREGQALPREQWPQLPEKPRLD 301 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +L+ + + H+ISA +A R+ + +LL K L SGWR E Sbjct: 302 ERDEVLVDIGMALLRECAREHQISAAAIAQRKDVIELL------KSDGKSGRLSSGWRRE 355 Query: 361 LMAEALHNLLQEYPQ 375 + + + + + Sbjct: 356 IAGQTIQHWFSGESR 370 >UniRef50_Q21L29 Ribonuclease D n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L29_SACD2 Length = 386 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 133/373 (35%), Positives = 211/373 (56%), Gaps = 3/373 (0%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 I+T + L CE ++ +A+DTEF+R++TYYP GLIQ+ DGE L+DP I D Sbjct: 10 IHWISTVEELEECCERWQSKKLLAVDTEFMRSQTYYPIAGLIQVNDGEANYLLDPTTIDD 69 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +SP IL D I K +H+ SEDLEVF + FG LPQ L DTQI AF S GFA MV Sbjct: 70 FSPFAEILVDDDIIKAIHSCSEDLEVFYHSFGFLPQRLFDTQIAGAFVNLGYSMGFARMV 129 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + GV L K+E+R+DWL RPL+ Q YAA DV YL + KL+ E +A L E Sbjct: 130 QGVLGVELPKTETRSDWLQRPLSVAQKHYAALDVEYLYLLAGKLLTELKAKERLDWVFGE 189 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + + + + P+ ++ + NAW+L +QLA Q L +WR A++RD N +V+E Sbjct: 190 GKTIVKNFSDNLDPKLSYLRVKNAWKLNAKQLAIFQNLCEWRELTAQKRDKPRNRIVKEN 249 Query: 243 HLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L+++A P + +L + G+S IR G+ LL L+E+A + LP+ + + Sbjct: 250 TLFAMALKRPKHISQLRNYEGMSDRVIRTDGEYLLRLIERADKIEASDLPELLPKPLTSA 309 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 + KA+++ + V++ I++E+LA +++ + ++ + + + + PE WR L Sbjct: 310 ENK-RVKALRAEVQKVADEIGIASEILARKKEYDYIVRDYL-ARGEWSYPEGFPQWRQAL 367 Query: 362 MAEALHNLLQEYP 374 + + ++ ++ P Sbjct: 368 LTDLINETIKVEP 380 >UniRef50_Q0BVP4 Ribonuclease D n=18 Tax=Alphaproteobacteria RepID=Q0BVP4_GRABC Length = 429 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 109/374 (29%), Positives = 182/374 (48%), Gaps = 11/374 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 +IT + LA+LC +R P + +DTEF+R RTY+P+L ++QL + +A+ID L D Sbjct: 47 TLITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELD 106 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +P+ +L DP++ K HA +D+E+FL FG +PQP+ DTQ+ A G G+ ++V Sbjct: 107 LAPVGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQVGYDTLV 166 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 +G +DK+ +DW RPL++ Q +YAAADV +L + L E G L +E Sbjct: 167 SSLTGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGRLAWVSEE 226 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ P W + R L L+ + WR +A+ ++ ++++E Sbjct: 227 MAVLNDPATYRTDPVTMWERLR-PRTNNRRYLGLLRAICAWREVEAQRLNIPRQRLIKDE 285 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIR--FHGKTLLALVEKAQTLPEDALPQ-PMLNLMD 299 L +A P L G G TLLA + +A+ LP+ LP P Sbjct: 286 SLLEIAATSPADAESLAQARGVGRGFAEGRSGATLLAAIAEARGLPDADLPAIPRSRESG 345 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 +K L+ SE H ++ +LLAS +++L + + ++P ++GWR Sbjct: 346 ARPSPALVSLLKVLLAAKSEQHNVAPKLLASSEDLDRLA-----TEAEPDVPA-LTGWRR 399 Query: 360 ELMAEALHNLLQEY 373 ++ + L Sbjct: 400 DVFGQDALALKNGE 413 >UniRef50_A4VJA7 Ribonuclease D n=25 Tax=Bacteria RepID=A4VJA7_PSEU5 Length = 401 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 203/373 (54%), Gaps = 4/373 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Q + D LA LC R P +A+DTEF+R T+YP GL+Q+ DG LIDPL + Sbjct: 30 IETQWVVDDAHLARLCAEWRQLPFVAVDTEFMRVDTFYPIAGLVQVGDGRRAYLIDPLAV 89 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 DW P +L D ++ K LHA SEDLEV L + G LPQPL DTQ+ A + S G++ Sbjct: 90 RDWHPFATLLDDAAVVKVLHACSEDLEVLLRLTGSLPQPLFDTQLAAGYLNIGFSMGYSR 149 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ G+ L K E+R+DWL RPL+E Q YAA D +L + L+ + L Sbjct: 150 LVQAVLGIELPKGETRSDWLQRPLSEMQVRYAAEDAQHLAELYEALLPKLSDDKR-AWVL 208 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++ + Q PE+A+R++ AW+L+ +QLA L++L WR R+AR R+ N V+R Sbjct: 209 EDGAELVANLQRESDPEEAYREVKQAWRLKPQQLAVLKVLTAWRERQARARNQPRNRVLR 268 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 E LW +AR P L L + + +R G+ LLA++ +A PE P + + Sbjct: 269 EASLWPLARTQPCDLVTLARIDEMHPRTVRQDGEALLAMIREAAATPEQDWPAALPEPLP 328 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 + K ++++ ++ I+ EL+ ++ + LL + LP+ + GWR Sbjct: 329 L-EVSGVLKKLRAVGQREAKALDIAPELMLRKKTLEALLKSGY-PDGPYQLPDSLRGWRR 386 Query: 360 ELMAEALHNLLQE 372 E M +AL ++L++ Sbjct: 387 ERMGQALLDVLEK 399 >UniRef50_A4GIY0 Putative ribonuclease D n=1 Tax=uncultured marine Nitrospinaceae bacterium RepID=A4GIY0_9DELT Length = 386 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 193/370 (52%), Gaps = 4/370 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 ITT D L + CE +++ + +DTEFVR RTY+ + GLIQ+ GEH A IDP+ + D + Sbjct: 2 YITTTDQLKTFCENIQSADVLVVDTEFVRERTYFHRTGLIQVGGGEHFAAIDPIALPDMT 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL +L+DP+ K HA +DLE+ + G++ P+ DTQI AA G FA +V + Sbjct: 62 PLLELLKDPTKVKVFHAARQDLEILVRFCGQVIPPIFDTQIAAALVGWGTQISFAKIVYK 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 G + KSE+ TDW RPL++ Q EYA DV YL+P+ KL+ + G L E Sbjct: 122 ALGKKIHKSETYTDWCRRPLSDSQIEYAIDDVRYLMPVYNKLIERLKKMGRLDWVQGEVN 181 Query: 185 LMQMRRQ-EVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + P + I N LR R LA LQ +A WR +A +RD ++R+E Sbjct: 182 AWEDPKTFALPDPYQRFMKIKNLRSLRPRNLAVLQEIAAWREGEAVKRDCLAKAIIRDET 241 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +AR P L + G E+ G ++L+ +E+A LPE L + + Sbjct: 242 LLEIARKAPRDAKTLSGIRGFYQKELNKGGGSILSAIERAMELPESDLVE-LPESNGHAT 300 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 R + + + + SE KI +LA R+QI+ + H++ K + L GWR EL+ Sbjct: 301 TRGVEELLSAYVQIRSEELKIEPSVLADRKQIHSFVA-HFEKKEEMEEHFLFQGWRKELI 359 Query: 363 AEALHNLLQE 372 + +LL Sbjct: 360 GSPMFSLLSG 369 >UniRef50_C8WAD1 Ribonuclease D n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WAD1_ATOPD Length = 379 Score = 316 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 115/373 (30%), Positives = 179/373 (47%), Gaps = 7/373 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+ I T + L + CE + +A+DTEF+R +TY+P+L L+Q+ G +A IDPL I Sbjct: 1 MDALYIATSEELFAFCERAKTSHILAVDTEFLREKTYFPKLCLVQVSTGSEIAAIDPLLI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +PLK +L +P I K LHA S+DLEV L P+ DTQ+ AAF G +A Sbjct: 61 DDLTPLKELLENPEIVKILHACSQDLEVLLEKMDCACAPVFDTQVAAAFLGMRQQVSYAG 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++ V L K+ES TDW RPL + Q YA DV YL I +++ + L Sbjct: 121 LVENFANVKLAKAESLTDWSKRPLDKEQLVYAEDDVRYLPAIYNQMVEKLIKLDRLSWLK 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E Q P A+ + + L RQLA + + WR A +RD+ +V+ Sbjct: 181 PEMDQHTNIDQYRRDPYQAYLRLKRSGSLTRRQLAIAREVCAWREEIAAKRDVPRKWVLS 240 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 +E + + R +P + L + + + LL +++ Q P P+ + Sbjct: 241 DELIIEICRRVPTTSDRLRKIRGTEQISQGGVVHLLDAIKRGQKTPAGQCPKIEHHAHPS 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 G + + +LI VSE I++ L+A+ + L + L +GWR + Sbjct: 301 AGSEGVVELMYALIRIVSEKEGIASPLIAN-------KDDLTDLLLDKDDARLKTGWRYQ 353 Query: 361 LMAEALHNLLQEY 373 L+ + L LL Sbjct: 354 LVGKQLVGLLNGE 366 >UniRef50_Q3A7R1 RNase D n=2 Tax=Desulfuromonadales RepID=Q3A7R1_PELCD Length = 375 Score = 316 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 154/372 (41%), Gaps = 6/372 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++ +A L + +R IA+D E +Y ++ L+Q+ L+DPL + D Sbjct: 6 ILVDDVS-IARLAQELRDEAVIAVDLEADSLHSYQEKVCLLQISTSTRTVLVDPLAVEDL 64 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + L +L DP+I K HA D+ F Q L DT I G G A ++ Sbjct: 65 AALAPVLADPTIRKIFHAADYDIRCLFRDFRIEVQGLFDTMIACQMLG-EKRVGLADVLA 123 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 +Y V LDK R DW RPL E YA D +L +T L G L A +E Sbjct: 124 KYLDVELDKRYQRADWSKRPLEEGMILYAMEDTCHLHRLTEILEGRLRDMGRLSWAEEEF 183 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 L+Q R + + A L +QLA L+ L WR +A RD VV + Sbjct: 184 ALLQKVRHSENNGP-LFMRVKGAGLLERKQLAVLEQLLQWRDEEACRRDRPAFKVVGNKT 242 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLMDM 300 L +A+ MPGSL E + G S +G+ L+ +V KA +P + P Sbjct: 243 LLGLAQIMPGSLREAKGIEGFSPRLADRYGRALIGVVCKAAAIPREEWPVYPRGERRERD 302 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P K +K + ++E + +L + Q+ + Q ++ W+ E Sbjct: 303 PAVEGRMKDLKQVRAAMAEELDMDPGILVNNAQLEGVARACPADMDQLTELGILKNWQRE 362 Query: 361 LMAEALHNLLQE 372 ++ E L L Sbjct: 363 VLGEGLLGALNR 374 >UniRef50_A4A872 Ribonuclease D n=1 Tax=Congregibacter litoralis KT71 RepID=A4A872_9GAMM Length = 370 Score = 316 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 6/371 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MN+ ++ DD+L ++ IA+DTEF+R +YYP + L+QL +H LIDPL I Sbjct: 1 MNWTLVENDDSLRGALASLAGADEIAVDTEFMRRNSYYPHIALLQLCTDDHAWLIDPLTI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 ++ L+A+L D + K LH+ SEDLEVF + G LP PL+DTQ A G+ G+ + Sbjct: 61 SNLDGLRALLTDSACIKVLHSCSEDLEVFRHWLGVLPSPLVDTQRATALLGKGFGLGYRA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+E GV LDK E+R+DWL RPL+E QC YAA DV L+P L E G + L Sbjct: 121 LVKELLGVELDKGETRSDWLKRPLSESQCHYAALDVLELVPAWRILRELAEEQGRMQWVL 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DE + R +R + +A +L RQL L+ L +WR AR D ++V Sbjct: 181 DEGE--EAIRLLKDRDGQIYRRVKSASRLSRRQLEALRRLCEWREDLARAVDKPRGWIVE 238 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ ++A +P L L + + + R G +LLA VE+A L E+ALP P L Sbjct: 239 DKAFLAIAMAIPEDHDALAELDVLPASVLRKQGDSLLACVEQALQLSEEALP-PALPGPL 297 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P R KA+++ ++ ++ E+L S + ++ PE GWR Sbjct: 298 TPPQRNLLKALRTEAKSIAAGLNVAPEILISTADLELIIR--EASGEAITEPERWQGWRA 355 Query: 360 ELMAEALHNLL 370 E + + L L Sbjct: 356 EAVIQPLRASL 366 >UniRef50_A4SMN8 Ribonuclease D n=2 Tax=Aeromonas RepID=A4SMN8_AERS4 Length = 379 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 167/372 (44%), Positives = 231/372 (62%), Gaps = 6/372 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+YQ+IT L ++ P +A+DTEFVRTRTYYPQLGL Q++DGEHLAL+DPL + Sbjct: 10 MHYQLITQQAELEQYLASLADVP-LAIDTEFVRTRTYYPQLGLFQIYDGEHLALLDPLTL 68 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +PL L LHA EDLE+ + G LP + DTQ+ AF G +S GF + Sbjct: 69 -DLAPLWQRLGRAGQIAILHASGEDLELIQHEAGHLPNQMHDTQLATAFLGYGVSVGFGA 127 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + +E+ GV L K ++RTDWLARPLTERQ EYAAADV YL+P+ K+M + SG Sbjct: 128 LAKEFLGVDLVKDQARTDWLARPLTERQLEYAAADVLYLMPLYEKVMAKLHESGKFAWFE 187 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 EC+ R+ + P A+ DI NAWQL R+LA L+ LA WR ++A RDLA+NFVV+ Sbjct: 188 QECQNHSARKTQGSDPYQAYLDIINAWQLGRRELAILRELAAWRQQEAVRRDLALNFVVK 247 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E HL+ VA P SL +L+ LGL+ EI+ HGK +L +V +AQ D+ P+P+ L+D Sbjct: 248 ELHLFKVAERRPASLRDLNELGLAPIEIKIHGKRMLDIVAQAQRSEPDSWPEPIRRLVDY 307 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN----NLPELISG 356 P Y+ K IK ++ + ++ I EL+AS++ I+Q W W++ + + P L+ G Sbjct: 308 PQYKAELKRIKGMVEEKAKACNIPPELVASKKIIHQYFTWSWRMSDEERARSDKPMLLQG 367 Query: 357 WRGELMAEALHN 368 WR EL+ L Sbjct: 368 WRHELVGHLLAQ 379 >UniRef50_A9A075 3'-5' exonuclease n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A075_DESOH Length = 382 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 155/373 (41%), Gaps = 4/373 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + T LA + + P +A+D E + ++ LIQ+ LIDPL ++D Sbjct: 9 FTFVNTPSGLAQVVHRLERVPVVAVDLEADSLHHFTEKVCLIQIGVNGDAFLIDPLALSD 68 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S LK DP + K LH D+ FG L D++I + F G S G +V Sbjct: 69 LSSLKPFFADPGVIKVLHGADYDVRSLYRDFGITITGLFDSEIASRFLGV-QSTGLNDVV 127 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 GVT+DK + DW RPL E+ YAA DV YL+ + +L E + G +E Sbjct: 128 NRRFGVTMDKGCRKQDWTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQMGRAEWVAEE 187 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 C L+ R + A +L R LA L+ L R + AR++D V+ + Sbjct: 188 CELLSRVRYANGEDTPLFVRFKGAGRLSRRTLAVLEALLVARQKMARKKDRPPFKVMGND 247 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQ-PMLNLMDM 300 L +A+ P + L+++G S ++ +LA VE+A LP+ LP P + Sbjct: 248 ALLRLAQERPRNRKALEAMGVFSKKQLPMVADGVLAAVERAMVLPDSQLPVYPRTRQPAL 307 Query: 301 PGYRK-AFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P + +K + + LL + + + K E + W+ Sbjct: 308 PRAAARRVEILKQWREKAATRLCLDPGLLFPKSLVTAVAQEGPKTLADLGRVEGVRRWQV 367 Query: 360 ELMAEALHNLLQE 372 E + + L Sbjct: 368 EALGPEMLEALGS 380 >UniRef50_B4RU88 Ribonuclease D n=2 Tax=Alteromonas macleodii RepID=B4RU88_ALTMD Length = 385 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 151/383 (39%), Positives = 227/383 (59%), Gaps = 9/383 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M YQ+ITT + L +CEA + A+ALDTEFVRT+T P LGLIQL+DG L LIDPL I Sbjct: 1 MQYQLITTFEHLEKVCEAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + P A+L + + K LH+ SEDLE FL F +P P+ DTQI + S G+A Sbjct: 61 DNMQPFVALLENTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSLGYAK 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++LDK ESRTDWLARPL E Q YAA DV YLLP +L +A G + Sbjct: 121 LVELLCEISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGKVHWIY 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E L+ +++ + + A+ I N+W+L + QL LQ LA WRL AR++DLA+NFV + Sbjct: 181 EEVALLVEKKRAQMPEDFAYLSIKNSWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFK 240 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQ----TLPEDALPQPML 295 E HL+ A+ + L + G++ +R +G T++ L+E+A+ PE + Sbjct: 241 EGHLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEARARYAQTPEKLRLPIVQ 300 Query: 296 NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNL----P 351 L+D+ Y+K +K++ +++ + ++ +++AS++Q+NQLL W+W + + P Sbjct: 301 RLIDIAKYKKYLAELKTISEQIAKDNGVTTDVIASKKQLNQLLKWYWFPVDETRVQGLKP 360 Query: 352 ELISGWRGELMAEALHNLLQEYP 374 +L+S WR L + LL + P Sbjct: 361 DLLSTWRAPLFRPHVARLLGDEP 383 >UniRef50_A0KXU5 Ribonuclease D n=21 Tax=Shewanella RepID=A0KXU5_SHESA Length = 388 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 155/368 (42%), Positives = 223/368 (60%), Gaps = 5/368 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +Q ++ + +L +L + P + LDTEFVRTRTYY +LGLIQ +DG+ LALIDP+ + D Sbjct: 23 FQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVALPD 82 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S ++L +P+I K +H+ SEDLEVF + P PL D+QI A+ CG G+A +V Sbjct: 83 LSAFWSLLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGHGLGYAKLV 142 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G +DK ESRTDW+ RPLTE Q YAA DV YL + +L + +A L +E Sbjct: 143 ETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLGWLYEE 202 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 M R + A+ + NA+QL QLA L++LA WRL KA RDLA+ FV+++ Sbjct: 203 GERMTEGRLATPDMDTAYLRVKNAFQLTEHQLAYLKVLAKWRLEKALARDLALGFVIKDH 262 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L ++A+ P S+G+L L L+ E R HGK +L +++ A P+ + L P Sbjct: 263 GLIALAKKQPKSMGDLLKLNDLTEQEKRIHGKDILRVMQTA---DLSNPPELVDVLALKP 319 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 GY+ AFK IK+ ++++ E H I E+L S+R I++ L W W K Q LP ++SGWRG++ Sbjct: 320 GYKSAFKNIKTCLSELCEQHAIPMEMLGSKRHIHEYLQWRWD-KQQGELPTVLSGWRGQI 378 Query: 362 MAEALHNL 369 AE+L L Sbjct: 379 AAESLAKL 386 >UniRef50_P44442 Ribonuclease D n=25 Tax=Pasteurellaceae RepID=RND_HAEIN Length = 399 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 151/373 (40%), Positives = 240/373 (64%), Gaps = 5/373 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +++++T + AL +C + A+ALDTEF+R TY+P+LGLIQL+DGEH++LIDPL IT Sbjct: 29 HFRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLAIT 88 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D+SP A+L +P + K LH+ SEDL VFL F +LP+P+IDTQI+A F G S G A + Sbjct: 89 DFSPFVALLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKL 148 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++Y V +DK +RT+W+ RPL++ Q +YAA DVWYLLP+ L E + W A D Sbjct: 149 AQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRD 208 Query: 182 ECRLMQMR--RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +C L+ + + + E A+ DI NAW+L +L+ L++LA WR A ERDLA++++V Sbjct: 209 DCELVLAKTHKLQERDSEKAYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLALSYIV 268 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + EHLW VA+ P + E+ +GL+ +E+R GK +L L+ +A+ + + P+ + + + Sbjct: 269 KSEHLWKVAKNNPRNTSEMLEMGLTENEVRVRGKEILQLLSQARRISSNDYPKSIERISE 328 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK-PQNNLPELISGWR 358 P Y+K + ++ + ++ ++ E++AS+R + +L+ W WK Q+ PEL+ GWR Sbjct: 329 DPRYKKTIRLLQEKVNSLTPE-GLTPEIVASKRTLEELIKWVWKYDCSQDKRPELLIGWR 387 Query: 359 GELMAEALHNLLQ 371 + E L + L+ Sbjct: 388 KPI-GEKLVDALK 399 >UniRef50_A4E7K3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7K3_9ACTN Length = 377 Score = 313 bits (802), Expect = 8e-84, Method: Composition-based stats. Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 8/369 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 I+T AL C+ R F AIA+DTEF+R RT++P+L L+Q+ +DPL I D S Sbjct: 2 YISTHQALLDFCQRAREFDAIAVDTEFLRERTFHPRLCLVQIATPAESVAVDPLVIDDLS 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL ++ D S+TK HA S+D+EV L+ G LP+P+ DTQ+ AAF G + ++V+ Sbjct: 62 PLAELMADESVTKVFHACSQDMEVMLHTVGVLPRPIFDTQVAAAFLGERQQISYGALVQT 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 + GV+L K+ES TDW RPLT++Q EYA DV YL+ ++M G + LDE R Sbjct: 122 FCGVSLPKTESLTDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRELGRVDWVLDELR 181 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 + +A+R + QL + LA WR +A R++ +V+ ++ L Sbjct: 182 PLADESHYRADRHEAFRKVKRINSCSRHQLGIARELAAWREDRAERRNIPRKWVMSDDTL 241 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML-NLMDMPGY 303 ++ + P + E S+ + L +++ + P D LP + + P Sbjct: 242 LALVKRNPVRVEEFRSIRGTDQLGERDVDGALMAIKRGASCPHDRLPLMVRGHRQISPEL 301 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 + +LI V+E ++ ++ASR + + L GWR EL+ Sbjct: 302 ESVTDLMYALIRLVAERSGVATSVIASRDDLADYIEH-------PEQSPLREGWRFELVG 354 Query: 364 EALHNLLQE 372 L +LL Sbjct: 355 SRLDDLLSG 363 >UniRef50_B8KGY1 Ribonuclease D n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KGY1_9GAMM Length = 372 Score = 310 bits (794), Expect = 7e-83, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 193/371 (52%), Gaps = 6/371 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M + ++ +D+ALA +A+ IA+DTEF+R TYYP + L+QL +H LIDPL + Sbjct: 1 MTWTLVESDEALAEALDALSNASEIAVDTEFMRRNTYYPHIALLQLCSDDHAWLIDPLKV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 TD L+A++ D K LH+ SEDLEVF + G +P PLIDTQ A G+ G+ + Sbjct: 61 TDLDGLRALMTDTGCWKVLHSCSEDLEVFRHWLGVVPSPLIDTQRATALLGKGFGLGYRA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E GV LDK E+R+DWL RPL++ QC YAA DV L+P L + G + L Sbjct: 121 LIELLLGVELDKGETRSDWLKRPLSDSQCHYAALDVLKLVPAWKILKDLALSQGRMEWIL 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DE + R D +R + +A +L RQL L+ L +WR AR D ++V Sbjct: 181 DEGE--EAIRLLNERDRDIYRRVKSASRLSPRQLDALRRLCEWREALARSVDKPRGWIVE 238 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ ++A+ MP + L L + + + R G TLLA V A+ + +DALP + + Sbjct: 239 DKACIAIAQSMPADIEALTDLDVLPASVIRKQGDTLLACVRGAKDVSQDALPDALPGPLA 298 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P R K ++ ++E ++ E+L S + LL + P+ GWR Sbjct: 299 AP-QRNVLKTLRQRARQIAEELNVAPEILISTADLELLLR--EASGVEIVEPQRWQGWRA 355 Query: 360 ELMAEALHNLL 370 + L L Sbjct: 356 TAVIAPLRASL 366 >UniRef50_Q5QWP5 Ribonuclease D n=2 Tax=Idiomarina RepID=Q5QWP5_IDILO Length = 390 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 145/378 (38%), Positives = 214/378 (56%), Gaps = 7/378 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y+++TT D L LC+ A+D+EFVR RTYY QLGL+Q+ A+IDPL Sbjct: 13 QYRLVTTTDDLQDLCQQAVKCGWFAIDSEFVRERTYYAQLGLLQIHANGTTAVIDPLADI 72 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLE-VFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D PL ++ + LHAG ED+E F G P+ + D+QI A FCG S G+A Sbjct: 73 DLEPLWQLISGDEVETVLHAGGEDIELFFQQSSGRQPKQIFDSQIAAGFCGLGDSMGYAR 132 Query: 121 MVEEYS-GVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +V+ GV LDKS SRT+WL RPL++ Q +YAAAD YL + L E G L Sbjct: 133 LVDALFDGVELDKSLSRTNWLKRPLSDEQLDYAAADASYLAIMYPYLKALCEEKGVLDIV 192 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +E ++ +R + + + + NAWQL RQLA L++L WRL KARERD+ + F+ Sbjct: 193 YEESQIQVRKRTQSWPDDLLYLGVGNAWQLNPRQLAALKILTPWRLHKARERDIPLGFIA 252 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFH-GKTLLALVEKAQTLPEDALPQPMLNLM 298 ++ L +AR MP + EL + R + G+ ++ +++A+ +PE PQ + L Sbjct: 253 KDGVLLELARRMPKNDDELSRIPDLAPMSRKYSGRDIIRCIQQAEQVPESEFPQTLERLD 312 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN----LPELI 354 DM GY+ FKAIK +T+++E+ I A L+ASR+QIN +N+HW+ Q P+L+ Sbjct: 313 DMEGYKPTFKAIKKAVTELAESLHIPASLVASRKQINDFINFHWQYSTQQQQRLPQPDLM 372 Query: 355 SGWRGELMAEALHNLLQE 372 GWR + L ++ + Sbjct: 373 VGWRQHAIGAELQAIISK 390 >UniRef50_Q2RSM2 Ribonuclease D n=10 Tax=Alphaproteobacteria RepID=Q2RSM2_RHORT Length = 386 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 123/372 (33%), Positives = 178/372 (47%), Gaps = 10/372 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW 63 +I+T LA C + + +DTEF+R +TY+P+L LIQL +DPL D Sbjct: 3 LISTTKDLADFCARLSTESFVTVDTEFMREKTYWPKLCLIQLAGTTEAHCVDPLAPDIDM 62 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL A++ + S+ K HA +DLE+FL+ G LP+P+ DTQ+ A CG S G+ ++V Sbjct: 63 APLFALMANESVLKVFHAARQDLEIFLHESGHLPKPIFDTQVAAMVCGFGDSVGYETLVA 122 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + +DKS TDW RPL +RQ YAA DV +L + +L A+G E Sbjct: 123 KLAKARIDKSMRFTDWARRPLNDRQLVYAAGDVTHLRVVYERLAETLAANGRTAWLDQEM 182 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 ++ V PEDAW I + R LA LQ LA WR R A+ERDL N V+R+E Sbjct: 183 AILTDPAHYRVEPEDAWMRIKARSR-SARFLALLQELAAWRERTAQERDLPRNRVMRDEG 241 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRF--HGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L +A P + L L + G +L V AQ +PE ALP P Sbjct: 242 LLEIAASAPTTPDALSQLRSVSKGMAEGTMGLGILEAVRLAQAIPEKALPHPPDREDLPQ 301 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 G +K L+ E ++ +L+A+ + ++ N + GWR L Sbjct: 302 GLGPVVDLLKVLLKMKCEEAGVAQKLVANMNDLERIAA------DDNADVLAMEGWRRAL 355 Query: 362 MAEALHNLLQEY 373 E L + Sbjct: 356 FGEDALRLKHGH 367 >UniRef50_A6FH72 RNase D, processes tRNA n=1 Tax=Moritella sp. PE36 RepID=A6FH72_9GAMM Length = 376 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 156/374 (41%), Positives = 221/374 (59%), Gaps = 6/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y ++ L + +A+DTEF+R RTYYP LGL QL+ G L+DPL + Sbjct: 1 MEYILVEDQITLQKMIAQCAEVEVLAIDTEFIRQRTYYPILGLFQLYTGTETYLVDPLAV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L +L LHA SEDL+VF+ V + P DTQI AAFCG S GF Sbjct: 61 EDLSSLWQLL--DRHPVVLHACSEDLDVFMTVANKFPDFFHDTQIAAAFCGLGSSLGFGG 118 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V EY +TLDK ESR++WLARPLTE+Q YAAADV++LLP +L + G+ L Sbjct: 119 LVAEYQKITLDKGESRSNWLARPLTEKQLSYAAADVYHLLPCWNELEAKLNELGYYDYYL 178 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E ++ R+ + P+ ++ NA L RQLA LQ+L +WR A RD+AVNFVV+ Sbjct: 179 QELDNLRRRKMQKKNPKTVYKQFKNASFLSPRQLATLQVLGEWRENNAVNRDMAVNFVVK 238 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 E H+ VA+ P SL +L+ L L EI+ HGK ++ +V++ + L +D LP+P+ + D Sbjct: 239 EAHILEVAKQQPKSLRDLNKLELLPIEIKRHGKQIIEMVKQVELLSDDQLPEPLTRISDY 298 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN----NLPELISG 356 PGY+K ++I++ I V+E I AEL+ S++ IN+LLNW WKL + + P ++ Sbjct: 299 PGYKKIVQSIRNKIAVVAEDKNIPAELIGSKKIINELLNWCWKLTAEEREVGDKPIMLCN 358 Query: 357 WRGELMAEALHNLL 370 WR EL+ + L Sbjct: 359 WRAELIGNTIFESL 372 >UniRef50_D2LDG9 Ribonuclease D n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDG9_RHOVA Length = 404 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 105/365 (28%), Positives = 174/365 (47%), Gaps = 7/365 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +IT+ L +LC+A+ P + +DTEF+R TY P+L LIQ+ A++DPL D S Sbjct: 28 VITSITDLKTLCDALAGQPYVTVDTEFMRQTTYRPKLCLIQMAAPGIEAVVDPLPNLDLS 87 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 P A++ + ++ K HA +D+E+ G +P PL DTQI A G + + ++V++ Sbjct: 88 PFYALMANTAVVKVFHAARQDIEIVWQEAGVIPMPLFDTQIAAMALGHGDAISYGALVKK 147 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 DK+ DW RPL +Q EYA DV YL + AKL E +G P +E Sbjct: 148 LLKKNHDKTYQAIDWCQRPLGPKQLEYALGDVTYLRDVYAKLKQRLEQTGREPWLEEEVA 207 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 ++ + P DAW+ + + + LA WR R A++ ++ V+++E + Sbjct: 208 VLTDPKTYAFDPADAWKRLK-LGGKSRTARSIIMELAAWRERAAQDENVPRGRVLKDEAI 266 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 + VA++ P +L L L +R G +L VE A + ++ G Sbjct: 267 YEVAKHAPRTLETLSRLRSVRDSVRSRGDAILRAVEAALGRDPGDVVNAAAHVDLSAGAS 326 Query: 305 KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE 364 + ++ L+ VS I+ +LLAS + +L + ++P + GWR L + Sbjct: 327 ATVELLRVLLKAVSAELDIAPKLLASAEDLEKLAQY-----DDPDVPA-LKGWRRPLFGD 380 Query: 365 ALHNL 369 L Sbjct: 381 KALAL 385 >UniRef50_D0WEC8 Ribonuclease D n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEC8_9ACTN Length = 399 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 175/369 (47%), Gaps = 7/369 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 IT L R +A+DTEF+R R Y+ +L LIQL E ++DPL + D S Sbjct: 4 YITDTKQLEEFVAFARTCDVVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKVHDLS 63 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL+ ++ D S+ K HA ++DL++ + +P P+ DTQ+ AA G+ + G+ ++V Sbjct: 64 PLRDLMVDTSVVKVFHAATQDLDILFHELDVMPDPIFDTQVAAALLGQTVQVGYGTLVLN 123 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 GV L K++S TDW RPL+ Q YA DV YL I +L EA G + Sbjct: 124 ECGVRLKKADSFTDWARRPLSSSQINYALEDVVYLPRIYRQLTERLEALGRASWLEHDFA 183 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 + + V PE+ WR + N QL RQLAC + +A WR RKA ER++ V+ + + Sbjct: 184 ELVDPSRYRVDPENRWRHLKNVNQLSGRQLACAKHVAAWRERKAMERNIPRKAVLSDVQI 243 Query: 245 WSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 + R P S+ ++ + S + + +L+ +K P+D P Sbjct: 244 VEICRREPRSIDDMFMVRGVASALSTKEARDVLSACKKGLETPDDECPSLARAPRGEQNV 303 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 + +L+ + + I+ + S ++ ++ H + +L+ GWR + Sbjct: 304 DAQTALLAALVHQRARENSIAFSAITSNAELARIARGH------TDDCDLLKGWRRAIAG 357 Query: 364 EALHNLLQE 372 + + L+ Sbjct: 358 KDVLKLMAG 366 >UniRef50_C1ZCS8 Ribonuclease D n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCS8_PLALI Length = 423 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 174/375 (46%), Gaps = 4/375 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M ++T + C+++R + DTEF+ T+ P+L L+QL + L+DP + Sbjct: 1 MTESLMTQQHEFEAFCKSIRQAGIVGFDTEFISEFTWRPELCLLQLATPDRAVLVDPFEV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +P I+ DP + H G E+ + G+ P D QI F GR G+ + Sbjct: 61 RDLAPWWEIMLDPDVVVVAHGGREEARFCVTNTGQAPVNFKDVQIAEGFRGRSFPLGYDA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ G E+R+DW RPLT+ Q YA DV ++LPI AK + + L Sbjct: 121 LVKRVLGHKSHGKETRSDWRRRPLTKSQVHYALEDVQHILPIWAKQSADLKKKNRLAWVE 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 DE + R + ++AW + +L +R+LA + + WR +A RD ++R Sbjct: 181 DEFTRLV-RDVVLERADEAWLKLPGLHKLNSRELAVAKNVFWWREHEAEARDKPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ L +AR P ++ EL + ++ +E R +LA ++ A LPED LP D Sbjct: 240 DDLLIELARRQPANIDELVATRDMNRTEYRKAAAEILAAIDTALALPEDQLPSRPPEPED 299 Query: 300 MPGYRKAF--KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + + + + + + ++ ++ + L+ WH ++ P L+ GW Sbjct: 300 DQSHDEQLLGQLLGIALANRCAEMNVAMSIVGKTADLRHLVRWHVFGDKRHGTPRLMQGW 359 Query: 358 RGELMAEALHNLLQE 372 R E+ + L N+L Sbjct: 360 RAEVCGDLLSNVLDG 374 >UniRef50_C6XKM8 Ribonuclease D n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XKM8_HIRBI Length = 390 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 172/374 (45%), Gaps = 10/374 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +++ D L CE ++ IA+DTEF R T++P+L LIQ E LIDPL Sbjct: 8 ELKLVADTDELIKACEELKKGEFIAVDTEFHRESTFWPKLCLIQAATLEFDCLIDPLSPN 67 Query: 62 -DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D +P ++ D S K HA +D+E+F + G P P+ D+Q+ A CG S + + Sbjct: 68 IDLAPFLDLMADTSRVKVFHAARQDMEIFTKLIGTPPAPIFDSQVAAMACGLGDSVSYEN 127 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V + +DKS TDW RPLTE+Q +YA DV +L KL + E G + Sbjct: 128 LVSQLLKARVDKSSQFTDWQRRPLTEKQLDYARGDVTHLRHCYVKLKAKLEKLGRMGWIE 187 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E ++ P++AW+ + + R LA + +++WR + A+E D + +++ Sbjct: 188 EETEILVNPDTYDTNPKNAWKRMK-IRKPRKDYLALIASVSEWREKLAQELDKPRSRILK 246 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGS--EIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 ++ + +A+ P + ++ L HG+TLL + A P+ P+ Sbjct: 247 DDAVQEIAQQKPIDVNAMERLRAVPKGFAKSKHGQTLLEAINAAIADPDAYAPEIPKRPT 306 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 + +K L+ VSE ++ L+A+ I ++ + + GWR Sbjct: 307 NTQPPGAVGDLLKVLLKHVSEEADVAPRLIANAADIERIA------CDVEPDVQAMRGWR 360 Query: 359 GELMAEALHNLLQE 372 E+ L Q Sbjct: 361 REVFGNLAIKLKQG 374 >UniRef50_D0CQ07 Ribonuclease D n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CQ07_9RHOB Length = 424 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 108/369 (29%), Positives = 175/369 (47%), Gaps = 15/369 (4%) Query: 8 TDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHL----ALIDPLGIT-D 62 T LA C FP + +DTEF+R RTYY +L LIQ+ L+DPL Sbjct: 45 TTQELADFCRLAANFPYVTVDTEFLRERTYYSKLCLIQMAVPSEDEDSAVLVDPLADGLS 104 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL + ++ + K HA +DLE+F G P+PL DTQ+ A CG G+ ++V Sbjct: 105 LDPLYELFQNEDVVKVFHAARQDLEIFWVEAGIFPKPLFDTQVAAMVCGFGEQVGYETLV 164 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + LDK+ TDW RPL++ Q YA ADV +L I L E E +G +E Sbjct: 165 RKICKQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEYLAAELEKTGRSRWVAEE 224 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 R++ + PE+AWR + + LA ++ LA +R A+E ++ N V +++ Sbjct: 225 LRVLTNPETYDIRPEEAWRRVKTRTN-SGKFLAVVRELAKFREGYAQENNIPRNRVFKDD 283 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A P + +L L E R +L V++ P D LP+ + + Sbjct: 284 ALIELASTKPRTHADLGGSRLLLREARKGPIADGILEAVKRGVNCPPDELPKVDNSRDKL 343 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 ++ L+ +E+ ++A+L+AS +++++ + ++P +SGWR E Sbjct: 344 KVNPALADLLRVLLKSKTESAGVAAKLIASSAELDRIAAG------ERDVPA-MSGWRYE 396 Query: 361 LMAEALHNL 369 + E L Sbjct: 397 VFGEDALKL 405 >UniRef50_B3Q9Q3 Ribonuclease D n=5 Tax=Bradyrhizobiaceae RepID=B3Q9Q3_RHOPT Length = 392 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 104/368 (28%), Positives = 177/368 (48%), Gaps = 11/368 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW 63 +I+T + LA C + P I +DTEF+R T+YP L ++Q+ E +ID L D Sbjct: 3 LISTSEQLADACARLARHPVITVDTEFLRETTFYPLLCVVQMASAEEALVIDALADGIDL 62 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 P ++ + + K HA +D+E+ + G +P P+ DTQ+ A G S + +VE Sbjct: 63 KPFFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYGDSIAYDQLVE 122 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 +G DK+ TDW RPLT+ Q YA +DV +L + A L + + G +E Sbjct: 123 RITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSEEM 182 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 ++ V PE AW + + + ++LA L +A WR ++A+ RD+ + V++++ Sbjct: 183 EVLTSPSTYDVHPERAWERLKTRVR-KPKELAVLMEIAAWREQEAQSRDVPRSRVLKDDA 241 Query: 244 LWSVARYMPGSLGELDSLGLSGS--EIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 L +A + P SL +L +L + G ++A V++ LP+ + Sbjct: 242 LGDIATHAPTSLEKLANLRSLPKGFDRSKWGTEIVAAVQRGLARDMATLPKIDKPRNNSN 301 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 G + +K L+ SE H ++A+++A+ + Q+ N + GWR EL Sbjct: 302 GT-AIVELLKVLLRMTSERHAVAAKVIATVDDLEQIAA------DDNADVGALRGWRREL 354 Query: 362 MAEALHNL 369 EA L Sbjct: 355 FGEAALAL 362 >UniRef50_A6VYC1 Ribonuclease D n=2 Tax=Marinomonas RepID=A6VYC1_MARMS Length = 384 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 121/373 (32%), Positives = 198/373 (53%), Gaps = 2/373 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +N + +++LAS C+ P IA+DTEF+R TY+P GLIQ+ +G+ LIDPL I Sbjct: 13 LNIVWVADNESLASWCDYWADLPVIAVDTEFIRRTTYFPITGLIQISEGDKAVLIDPLSI 72 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 +W PL+ ++ DPS+ K HA SEDL+VF + G LP P DTQI A+ S + Sbjct: 73 DEWEPLRNLMVDPSVMKVFHACSEDLDVFDRLLGVLPTPFYDTQIGEAYASAQWSLSYVK 132 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++ EY + + K E+R+DW+ RPLT+ Q YAA DV YL + + EA L + Sbjct: 133 LIHEYLQIEVAKDETRSDWVQRPLTDAQKRYAALDVVYLAKVYPMQIARLEAKNMLGWVM 192 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 ++C ++ + Q PE W I AW+L L L+LL WR +AR+ D+ +++ Sbjct: 193 EDCDSLKWQYQMNSDPEQNWDGIKTAWRLTPAGLTLLRLLFIWRDGQARKEDVPKGQILK 252 Query: 241 EEHLWSVARYMPGSLGELD-SLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + LWS+A+ +P + + L+G + R +G+ +L V L D P+ + Sbjct: 253 DRTLWSLAKTLPTHHKAVSEAEELTGRQHRLYGEVILQNVALVNELSPDEYQLPLEIPLP 312 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 KAIK+ I D +E I+ E + R+ ++ L+ + + ++GWR Sbjct: 313 SQ-AGDLTKAIKAFIRDKAEMLNIAPEAMMKRKLLDPLVRHLYDGTEIDLQNPAMTGWRR 371 Query: 360 ELMAEALHNLLQE 372 +++ + + N ++ Sbjct: 372 DVIVDPILNRFKK 384 >UniRef50_C4LF08 Ribonuclease D n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LF08_TOLAT Length = 365 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 129/363 (35%), Positives = 191/363 (52%), Gaps = 1/363 (0%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+Y I +D L L + + + LDTEF+R TY+P+LGL+QL LIDPL I Sbjct: 1 MSYSYIDSDILLQPLLAQISSASTLLLDTEFIRVSTYFPKLGLLQLHLNAVDYLIDPLAI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + L + H+ EDL+V +LP + DTQ+ AAF G S G+A Sbjct: 61 NSINLLWDAIFSDHRLFVFHSCKEDLDVLQVCAQKLPGRVFDTQVAAAFLGYGASLGYAG 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE+ VT+ K ++ TDWLARPLT Q YAA DV YL + L E +G Sbjct: 121 LVEKVCDVTVAKDQTLTDWLARPLTAAQKLYAAKDVSYLQYLYDHLSQELNTTGKTEWFN 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E + +Q+ V P++ +R+I+ AWQL +LA L+ LA WR + A D NF+VR Sbjct: 181 EEMTALLEAKQQAVIPDELFREISGAWQLYPSELAVLRELAKWRYQTAISEDKPQNFIVR 240 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 EE L ++R P + EL +S + + +L ++K P + P + +MD Sbjct: 241 EEVLADLSRKRPQTERELAQTDISYQQKNRYADAILQCIQKGMECPVELHPARIKRIMDF 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK-PQNNLPELISGWRG 359 P Y+ FK IK + ++ + + ELL SR+ INQ L W ++ K P++ SGWR Sbjct: 301 PHYKHDFKQIKQRVEIAAQDNNLPVELLGSRKLINQYLLWTYEGKSSDVEQPKITSGWRN 360 Query: 360 ELM 362 +L+ Sbjct: 361 KLL 363 >UniRef50_Q1N1A2 Ribonuclease D n=1 Tax=Bermanella marisrubri RepID=Q1N1A2_9GAMM Length = 382 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 111/379 (29%), Positives = 185/379 (48%), Gaps = 13/379 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--- 60 + I T LAS CE IALD+EF+R T+YP+L LIQ+ DG L+DP+ I Sbjct: 2 KYIDTHIDLASACEHWNTCNRIALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRINRA 61 Query: 61 -------TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP 113 W PL +L + ++ K LH+ SED + F + G +P P+IDTQ AA Sbjct: 62 HRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMASID 121 Query: 114 MSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS 173 G+ +V++ + L+K +R+DWL RPLT+ Q YAA DV +LL IT +L + Sbjct: 122 GIMGYQKLVKQLLDIDLEKGATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQLVTQ 181 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDL 233 G L++C M I AW L+ +QL L+ L WR R+ R + Sbjct: 182 GRWTWLLEDCERMVEDWLIGQEQGYGIERIKKAWMLKPKQLFTLEKLLAWRERRCRTVNK 241 Query: 234 AVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ 292 ++ + L +A +P S +L S+ G+ +R G+ ++ ++++ + P+ Sbjct: 242 PRGHILNDSLLVDLAMRLPTSTKQLSSIKGIRQPTVRKDGEQIVDIIQRCKESESSQWPE 301 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPE 352 + + FK ++ L+ ++ + E++A ++ + +L + P +P Sbjct: 302 RLPRPF-NQVAGEWFKDMRDLVQKKAKELDVPPEMVARKKSLEGMLRKAYPNGPI-EIPR 359 Query: 353 LISGWRGELMAEALHNLLQ 371 + GWR E++A L L+ Sbjct: 360 SLQGWREEVIATPLVEKLK 378 >UniRef50_B3E3R4 3'-5' exonuclease n=1 Tax=Geobacter lovleyi SZ RepID=B3E3R4_GEOLS Length = 381 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 169/375 (45%), Gaps = 3/375 (0%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y +I + L LC + +ALD E Y ++ L+QL + L+DPL ++D Sbjct: 6 YTVIEHNHQLEQLCAELTDETELALDLEADSMHHYREKVCLLQLSNRAGTWLVDPLRLSD 65 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 SPL+ +L P + LH G D+ FG + Q + DT + A F G +G A+++ Sbjct: 66 LSPLRVLLARPGLRTVLHGGDYDIRSLHRDFGIVVQQMFDTMVAAQFTGATE-FGLAALL 124 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G+ LDK + DW RPLT +YAA D +LL + +L E G +E Sbjct: 125 REHFGIELDKRFQKADWSKRPLTTEMADYAAHDTAHLLELADRLHARLEQLGRREWVAEE 184 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 C L+ R + + A +L+ R LA L+ L +R ++ARE D V+ E Sbjct: 185 CALLVGNRVAEKGNGPLFLNCKGAGKLKPRNLAILEALLQFRDQQAREADRPAFKVIPAE 244 Query: 243 HLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQ-PMLNLMDM 300 L +A +P ++ +++ + GL+ + +G+ LL +V + + E LP+ P Sbjct: 245 ALLKIAELVPAAVRDMNGIAGLTPRLLGRYGEQLLTVVRQGLAVAEADLPRFPRGRGEPN 304 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PG + +K +S +++ LLA + ++ Q I W+ Sbjct: 305 PGIKARITRLKQWREGISSRMGLASGLLAPNWLLERIAEQQPVTLEQLQAIPGIRRWQVG 364 Query: 361 LMAEALHNLLQEYPQ 375 L + L + Q Sbjct: 365 LWGTEMVETLAKETQ 379 >UniRef50_C0QAP2 Rnd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAP2_DESAH Length = 377 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 163/374 (43%), Gaps = 4/374 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 + Y +I D+ LA+ C+ ++ +A D E + ++ L+Q+ D ++DPL I Sbjct: 2 IEYTLIENDEDLAARCDLLKTEKRLAFDLEADSMHHFKEKVCLVQMADPNDSFVVDPLSI 61 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S LK + DP+ITK H D+ F L DT+I F G A+ Sbjct: 62 DDLSVLKPVFEDPAITKVFHGSDFDIRSLDRDFDIHVNNLFDTEIACRFLGIQKR-SLAA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++E++ +TLDK +TDW RPL++ Y+ DV YLL ++ L E G L A Sbjct: 121 LLEKHFDLTLDKRFQKTDWSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDEGRLAWAE 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E L R + E + + ++ R LA L+ L +R A E+D + ++ Sbjct: 181 EEFELQTRVRHDNNGNEPLFLKFKGSGKMGRRSLAVLESLLQFRKTLAVEKDKPLFKIIS 240 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNL 297 E + +A P +L L L LS ++ +G +A + A PE LP Sbjct: 241 SEAIAKMAANQPETLHSLKELRALSPRQMDMYGTQCVAAIVGALKTPEKELPVYPRKRLP 300 Query: 298 MDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 P + +++K + S +I L + I + + + + + W Sbjct: 301 EMAPQVPERIRSLKEMRITASNKTRIEPGFLLNNTMITAIAIASPRTADELAQIDGMRNW 360 Query: 358 RGELMAEALHNLLQ 371 + E + + + + L+ Sbjct: 361 QLEALTDDILSTLR 374 >UniRef50_C1AC33 Putative ribonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AC33_GEMAT Length = 388 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 159/373 (42%), Gaps = 4/373 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + T + + + + AIALDTE + ++ L+QL +H A+IDPL I Sbjct: 7 HYLDTVETVDTFLAGLNGVRAIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIGTP 66 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + L +L DP + LH DL + +G L DT++ A G +G A+++E Sbjct: 67 TRLGVLLEDPQVEVVLHDADYDLRLLRQDYGWRVTHLFDTRVAAQLLGIRA-FGLAALLE 125 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 ++ G+ LDK R DW RPLT +YAA D +LL + +L E G A +E Sbjct: 126 QFFGIKLDKKHQRADWSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWAQEEF 185 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + R E AP+ ++ + A L R+LA L+ L WR A E D A V E Sbjct: 186 TRAEGTRWEPEAPDTSFLRLKGARDLNRRELARLRELVRWRDGIAAELDRATFRVAGNEV 245 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLMDM 300 L +AR P + L ++ G + L + + +P+ LP Sbjct: 246 LLDLARQAPATRDALFAVKGFPRGMSESRAQEALQSIVRGNAVPDAELPRFPKATRWDRE 305 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 P + + +K++ + + +L SR ++ ++ + + W+ E Sbjct: 306 PDFDERVARLKTVRDAAATDLNLDPGVLCSRDRMEAVVRRKPRHVDDLAELPELRRWQVE 365 Query: 361 LMAEALHNLLQEY 373 ++ A L Y Sbjct: 366 VLGPAFVKALASY 378 >UniRef50_A7HYE5 Ribonuclease D n=116 Tax=Alphaproteobacteria RepID=A7HYE5_PARL1 Length = 427 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 108/373 (28%), Positives = 187/373 (50%), Gaps = 10/373 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 ++ITT++AL + C+ + + +DTEF+R T++P L LIQL ++DPL D Sbjct: 45 EIITTNEALRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLD 104 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +P A++++ ++ K HA +D+E+F + +P PL DTQ+ A CG S G+ ++V Sbjct: 105 LAPFYALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGFGDSVGYETLV 164 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + +G ++DKS TDW RPL+++Q +YA ADV YL I L + +E Sbjct: 165 RKLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTHTKRAHWVAEE 224 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++Q + PE+AW+ + ++ R LA L +A WR R+A+ERDL + V++++ Sbjct: 225 MAVLQDPETYAMRPENAWKRVKARFR-GQRGLAVLVEVAAWRERQAQERDLPRSRVMKDD 283 Query: 243 HLWSVARYMPGSLGELDSLGLSGS--EIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A +P ++ +LD L +L+ VE+ + E+ +P Sbjct: 284 ALAEIATQIPRTISDLDGLRAVPKGFSNSRSAASLMEAVERGLAMKEEDIPVVEGPEPLP 343 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 PG + +K L+ E H ++ +L+A+ + + + GWR E Sbjct: 344 PGIGPLVELLKVLLKIKCEEHDVAQKLVANVADLELIAAHSEADVG------ALKGWRRE 397 Query: 361 LMAEALHNLLQEY 373 L E L + Sbjct: 398 LFGEDALRLKRGE 410 >UniRef50_C7MN49 Ribonuclease D n=3 Tax=Coriobacteriaceae RepID=C7MN49_CRYCD Length = 399 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 175/373 (46%), Gaps = 9/373 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 + IT L + + +A+DTEF+R +TYY +L L+Q+ + ++DP ++ Sbjct: 17 HSVFITDQAELEAFAKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAVS 76 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L + + SI K +H+G +DLE+ G LPQPL DTQ+ AA G G+ S+ Sbjct: 77 DLGVLAPLFQSSSIMKIVHSGRQDLEILNREVGLLPQPLFDTQVAAALLGHTQQIGYGSL 136 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V GV L K +S TDW RPL+ Q YAA DV YL + + E E G + Sbjct: 137 VSAVCGVQLAKMDSFTDWSRRPLSASQISYAADDVIYLPQLYHTMTDELERLGRIHWLDP 196 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + V P D +R + QL RQL+ + +A WR ++AR+RD+ +V+ + Sbjct: 197 DFAALIDPALYVDDPRDRYRRLKRVGQLSRRQLSAAREVAAWREKRARDRDIPRKWVMTD 256 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQP-MLNLMD 299 E + + ++ L + GLS +T++ + + L D P+ + Sbjct: 257 EQVVEACKREARTIDSLFMVRGLSDRLSTGDARTVVRCICRGLDLEPDKWPKSDHVAYGG 316 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 A+ +L+ + + I+ + LAS + ++ + H E++ GWR Sbjct: 317 DVNVDAVLDAMTALVRLRARQNNIAFQTLASHSDLVKVAHGHKDA-------EILRGWRR 369 Query: 360 ELMAEALHNLLQE 372 E++ L LL Sbjct: 370 EIVGAELLELLAG 382 >UniRef50_Q1QXJ4 Ribonuclease D n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QXJ4_CHRSD Length = 375 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 122/375 (32%), Positives = 193/375 (51%), Gaps = 8/375 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGI 60 + + T AL C+A+ +A+DTEF R T++P L+QL G+ + ++DP + Sbjct: 6 EIRWVATPGALDDACDALAGAEWLAVDTEFHRESTFFPIAALVQLYAGGDAVYMVDPRAV 65 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + L+A+L K LHA EDLEV + P+ DTQ+ + G S G+ Sbjct: 66 SASPALQALLSVSGPLKLLHASGEDLEVLESWAEVGVAPIADTQVAQSLLGTQASLGYQR 125 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +VE ++G L K E+R+DWL RPL++ Q +YAA DV YL I G L Sbjct: 126 LVEHWTGDVLPKEETRSDWLQRPLSDAQLQYAALDVVYLPRIWEAQRDALMREGRLAWLE 185 Query: 181 DECRLMQMR-RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +EC + R++V A E +R W+L RQLA Q L WR + R RD+ ++ Sbjct: 186 EECARLCDANRRDVNADEHWYRRHRQLWRLEPRQLALYQSLTRWREGEVRRRDVPRGWLA 245 Query: 240 REEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 ++ L+++A MP + +L ++ G+ + I+ G LL +V+ A L EDALP+ + Sbjct: 246 SDKVLFAIAMAMPRNRHQLAAVEGVRPTLIKHDGDALLEMVQAAAHLAEDALPRALPAPQ 305 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 P ++ KA+KS++ +E I+ E+LA+RR + L+ P L GWR Sbjct: 306 -SPAFKSRLKALKSVVNREAERLDIAPEVLANRRDLEALVMADLDGVP----LSLPQGWR 360 Query: 359 GELMAEALHNLLQEY 373 G L+ +A L ++ Sbjct: 361 GTLLGDAFTQALADH 375 >UniRef50_A1UT53 Ribonuclease D n=5 Tax=Bartonella RepID=A1UT53_BARBK Length = 391 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 166/372 (44%), Gaps = 9/372 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 ++IT L +R + +DTEF+R T++PQL LIQL ALIDP+ D Sbjct: 2 ELITKTKDLEIAIATLRNSDFVTVDTEFIRETTFWPQLCLIQLASPNSTALIDPMVPDID 61 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P ++ D +I K HA +D+E+ ++ +P PL DTQI A CG S + +V Sbjct: 62 LQPFFDLMIDKNIVKVFHAARQDIEIIYHLGRIIPFPLFDTQIAGAICGFGDSISYDQIV 121 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 +G LDKS TDW RPL+E+Q YA ADV YL + L + E S E Sbjct: 122 YHCTGQHLDKSSRFTDWSCRPLSEKQILYALADVTYLRDVYLSLKKQLEESKRFHWMDGE 181 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ + ++AW+ + + + + A LQ +A WR +AR+ ++ ++++E Sbjct: 182 MAILSTPTTYDIPEDEAWKKVKGRVK-KPCEFAILQKIAAWREHEARKYNVPRRHIIKDE 240 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRF--HGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A P L L + L+ +V ++ + LP Sbjct: 241 CLIEIAIQKPKDEYALKCLRNINKSWHHPSMTQALIKIVHESLEVDTSTLPALPKYNPID 300 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 A +K L+ V+ + I+ ++A+ + ++ ++GWR E Sbjct: 301 DKTAAAIDLLKVLLKLVANKNNIAPTIIATSNDLEKIATRTMTQNIPT-----MNGWRYE 355 Query: 361 LMAEALHNLLQE 372 + + +L+ Sbjct: 356 IFGKKAEQMLKG 367 >UniRef50_B7RU98 Ribonuclease D n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RU98_9GAMM Length = 373 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 196/378 (51%), Gaps = 14/378 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-----DGEHLALI 55 M++Q++ +D ALA L A A+ +DTEF+R T+YPQ+ L+QL +I Sbjct: 1 MDWQLVESDAALAELMNAAIGCDAVMVDTEFMRRNTFYPQVALVQLCFCGGGATGTAWMI 60 Query: 56 DPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 DPL I D +PL + +D + K LH+ SEDLEVF G LP PL DTQ AA G Sbjct: 61 DPLKIEDPAPLANLFKDAGVIKILHSASEDLEVFQRWLGVLPLPLFDTQKAAALVGLDFG 120 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW 175 G+ SMV E L K E+R+DWL RPLTE QC YAA DV +LL + + Sbjct: 121 LGYRSMVLELCNEDLPKGETRSDWLQRPLTESQCHYAAQDVIWLLDAYQIIAERCHSMQR 180 Query: 176 LPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAV 235 L++ R ++ +R I AW+L R+LA L +++WR R ARE+D Sbjct: 181 YDWVLEDGEEAC-RGLASMSSAQYYRRIKGAWKLEPRELAALIAISEWRERTAREKDKPR 239 Query: 236 NFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPM 294 ++++ ++ +A+ P ++ +L S + + GS +R +G+TLL LV + +PE LP + Sbjct: 240 SWIIDDKACLQLAQVGPANMNDLRSKIEMHGSSMRRYGETLLDLVAEQSAVPEAELPATL 299 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 ++ RK K +K + ++ ++ ++L + + L+ P Sbjct: 300 PAPLNS-VQRKQMKKLKQITEKIALDLGVAPQVLVASKDYEVLIR------KDPEQPAAW 352 Query: 355 SGWRGELMAEALHNLLQE 372 +GWR + E L +LL+ Sbjct: 353 AGWRRLKIIEPLRSLLEG 370 >UniRef50_Q2BKH7 Ribonuclease D n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKH7_9GAMM Length = 397 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 193/371 (52%), Gaps = 4/371 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 IT+ + L+ CE R P IALDTEF R T+YP GLIQ+ D + LIDPL I+D+ Sbjct: 20 IWITSAEQLSECCEKWRNLPLIALDTEFQRVDTFYPLPGLIQVADDQACYLIDPLEISDF 79 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 S L + +D + K +HA +EDLE+F G LP PL DTQI AA S G M+E Sbjct: 80 SSLSTLFKDEGVVKVMHAATEDLELFHKEIGALPVPLFDTQIAAALINWGFSMGLQRMLE 139 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 V L+K E+ ++WL RPLT Q +YAA DV YL I E + G EC Sbjct: 140 SCLSVQLEKHETTSNWLQRPLTSSQEKYAALDVAYLPAIYEIQRQELLSRGHFHWVEQEC 199 Query: 184 -RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ + V + T W+L +LA L+ L WR ++AR+R++ N ++R + Sbjct: 200 SAMLADAAIDDVDGFSYYTRFTQMWRLPKHKLAALRDLTAWREQQARKRNVPRNRILRNQ 259 Query: 243 HLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 + + P L +L L + S +R G+ +L ++ + + P+P+ + Sbjct: 260 AILQIIEQWPKGLADLSRLDEIKKSILRTDGEVILGFLKGGEASADKVEPEPIPQPLHY- 318 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 + K K +K++ ++E + + E+L R+++ QL+ + + LP+ +S WR E+ Sbjct: 319 FWNKHLKKLKAIARRLAEENNTAPEMLLRRKELEQLIRSGVD-EGEYRLPQAMSAWRKEM 377 Query: 362 MAEALHNLLQE 372 + AL + LQ Sbjct: 378 LDAALMDELQR 388 >UniRef50_UPI00016C3C86 ribonuclease D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3C86 Length = 435 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 100/371 (26%), Positives = 159/371 (42%), Gaps = 4/371 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q++T LA+ + P + DTEFV Y P+L L+Q+ E L +IDP Sbjct: 14 QLVTHPAQLAACLSHLAKAPLVGFDTEFVGEDAYRPELCLVQVSTAEQLFVIDPFECGSL 73 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +L D T +HAG ED+ + G P + D QI A G G+A +V Sbjct: 74 DGFWDLLLDRKRTVVVHAGREDVRMCYFQAGSAPPNVFDVQIAAGLVGLTYPIGYAGLVH 133 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + K E+ TDW RPLT Q YA DV YLLP KL + LP A +E Sbjct: 134 DLLRQRMQKGETLTDWRQRPLTPAQVRYAYDDVRYLLPAHRKLTERLKKYRRLPWAEEEF 193 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 R A + WR I L R LA + + WR + A + F++R++ Sbjct: 194 AAAVKRAVADDATIERWRKIKGIGALDRRGLAVAREVYGWRDKFAERLNKPPRFLMRDDL 253 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 L +AR P EL ++ R + +L + +A+ L P+P D Sbjct: 254 LIEIARRAPTRPEELHTVRGLP---RGQEEPILEAIRRAKALELGECPEPETRDNDSANV 310 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 + ++ D + ++++A L++S + ++ + ++P L GWR + + Sbjct: 311 VLLGNLLNVVLADFAGRNRLAANLISSGADLKAVVRSRVEGTDLPDVP-LCRGWRAKAVL 369 Query: 364 EALHNLLQEYP 374 L ++L Sbjct: 370 PELLDILSGET 380 >UniRef50_Q7URG3 Ribonuclease D n=1 Tax=Rhodopirellula baltica RepID=Q7URG3_RHOBA Length = 493 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 102/379 (26%), Positives = 176/379 (46%), Gaps = 8/379 (2%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +NY I T A CEA+ P I DTEFV Y P+L L+Q+ G+HLA+IDP + Sbjct: 90 VNYDSIETPSQFAEFCEAIADEPVIGFDTEFVSEDCYRPELCLVQVAAGKHLAVIDPYTV 149 Query: 61 TDWSPLKAILRDPSI-----TKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 D P IL D I HA E++ G L DTQ+ A F G Sbjct: 150 GDTKPFWDILTDDQIEPGSRVVIAHAAREEIRFAYRYSGRPIAGLFDTQLAAGFVGIEYP 209 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW 175 A++V++ G TL K E+RT+W RPLT+ Q YA DV L + +KL+ + +A Sbjct: 210 ASLATLVQKLVGQTLPKGETRTNWRHRPLTKDQLTYALHDVTTLAEMHSKLIADVKALDR 269 Query: 176 LPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAV 235 + +E +Q + + E+ W+ ++ + L+ RQL ++ L WR AR ++ Sbjct: 270 VSWLDEETDRLQKKVIDAEESEN-WQRVSGSSGLKPRQLEIIRHLWRWREEIARTKNRLP 328 Query: 236 NFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPM 294 V+R++ + +A+ ++ ++ G+ + A + A +P++ LP Sbjct: 329 RRVMRDDLMVELAKKGSPDTKKIRNIRGMERRGYNDQYDEIGAAIAAALDVPDEHLP-RR 387 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 + + + I +S K++ ++ + + +LL++ + P L+ Sbjct: 388 TRGRSRSASPMLSQFLSTSIACISRQQKLAPAIVGNSDDVKELLSYELDPRRGTPTPSLL 447 Query: 355 SGWRGELMAEALHNLLQEY 373 GWRG+++ A +L+ Sbjct: 448 KGWRGDIVGTAFRKILRGE 466 >UniRef50_A3ZQI0 Ribonuclease D n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQI0_9PLAN Length = 392 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 4/373 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 MNY+ + + L LC+ +R+ I DTEFV Y P L L+Q+ GE LA++DP I Sbjct: 1 MNYEYVESQSQLTELCDRLRSESHIYFDTEFVSEDVYLPDLCLVQIAAGEILAIVDPKRI 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D + ++ +H+G E+ G+ P L DTQI G F + Sbjct: 61 DDMNVFWELIAGGDHVSVVHSGREEFLFCYRATGKAPANLFDTQIAGGLIGMEYPASFGN 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 ++ L K E+RTDW RPL+ RQ EYA DV YL P +L E Sbjct: 121 LILRLLDEKLPKGETRTDWRVRPLSSRQIEYALNDVAYLGPAAQELEKELTKLDRTSWLQ 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +E Q E WR+++ L R LA ++ L WR ++A ++ ++R Sbjct: 181 EEMTSWQEALIESTQR-ARWRNVSGTGSLSRRSLAIVRELWKWRDKRASAANIPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ + +A+ +L ++ ++ G+ S++ + + + ++ A L E+ P + Sbjct: 240 DDLIAELAKRKSSNLKQIRAIRGMQRSDLNRYFEEIADAIQIALELDENDCPSSQPSWNQ 299 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 Y + + + + + K++ L + + + L+ H P+ P L GWR Sbjct: 300 GKQYGVLGQFLAAALGSICREAKVAPSLACTVQDVRDLIAHHMDGAPE--APSLAQGWRA 357 Query: 360 ELMAEALHNLLQE 372 E++ + + +LL Sbjct: 358 EVIGKTIEDLLDG 370 >UniRef50_Q2SIW8 Ribonuclease D n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIW8_HAHCH Length = 398 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 190/373 (50%), Gaps = 6/373 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + I T AL + +A+DTEF+R T+YP L+QL+D + + L+D L ITDW Sbjct: 18 RWIDTPAALQEALLRLEKTDWLAVDTEFIRGTTFYPAPALLQLYDRQCVYLVDMLKITDW 77 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 S + + I K +HA SEDLE+F V P LIDTQ+ A ++ G S+V Sbjct: 78 SGVSRLFESRDILKVVHACSEDLELFNCVGLSQPCGLIDTQVANALLDGELNEGLQSLVR 137 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + G+ L+K +R+DW RPLT++Q +YA DV L P+ KL SG AL+E Sbjct: 138 QNLGIELEKHATRSDWTQRPLTDKQIQYAQEDVVVLWPLYQKLAEALRLSGKYEIALEEG 197 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 M++ V + + W+LR L LA WR ++AR RD+ + ++ Sbjct: 198 EAMRLAAAGVQDMGRYYLKLRGGWRLRKGAQQLLAKLAAWREQEARGRDIPRKKICPDDE 257 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQP---MLNLMD 299 L ++A+ P +LG+L + + G+ +R +G L+ +V + D P+ M+ Sbjct: 258 LIAIAQRRPRTLGQLTEITSIQGAGLRRYGAELVGMVREHMKADGDE-PETGFEMIRPPI 316 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 Y+ K +K L ++ H+I+ LLASR + + + WH + P+L+ GWRG Sbjct: 317 PREYQDLVKKVKKLTQKLAREHRINVGLLASRGLLEEFVYWHIQGGA-GTQPQLLQGWRG 375 Query: 360 ELMAEALHNLLQE 372 + + L LQ+ Sbjct: 376 RICSAPLERWLQD 388 >UniRef50_Q0BZZ0 Ribonuclease D n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZZ0_HYPNA Length = 388 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 169/370 (45%), Gaps = 9/370 (2%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWS 64 IT AL LC A+ + +DTEF R TY+P+L LIQ LIDP D Sbjct: 9 ITEQSALEDLCGALSESDFVCVDTEFHRETTYWPELCLIQASAPGVEGLIDPRAEDLDIR 68 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 P ++ K HA +D+E+F + G P P+ DTQ+ A G S + ++++ Sbjct: 69 PFLDLIASDRQLKVFHAARQDIEIFNRLIGHPPGPIFDTQVAAMALGFGDSISYDNLIQR 128 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 +DKS TDW+ RPL+++Q YA DV +L K+ E E +G + +E Sbjct: 129 VLRKHIDKSSQFTDWMRRPLSQKQLVYALGDVTHLRDAYLKMRDELEKAGRMNWVREEMA 188 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 ++ P +AW+ + + A + +A WR R A+E D +++++ + Sbjct: 189 ELEDPATYDTDPMNAWQRLK-LRMPKKDYAAIVVAVAAWRERTAQELDKPRRRILKDDAI 247 Query: 245 WSVARYMPGSLGELDSLGLSGS-EIR-FHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 +A P S + + L + IR HG+ L+ +++A P+ P+ + + Sbjct: 248 QEIAAQKPRSEEDFNQLRAVPNGFIRSKHGQGLVDAIKEALANPDAFAPELTRPVQNAQI 307 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 A + +K L+ VS+ + + L+A+ I+++ + ++GWR ++ Sbjct: 308 PAGAPELLKVLLKHVSDENNVVPRLIANSSDIDRIARG-----ETSEDIAAMTGWRYDMF 362 Query: 363 AEALHNLLQE 372 + LL Sbjct: 363 GQKAIALLSG 372 >UniRef50_Q31F99 Ribonuclease D n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F99_THICR Length = 385 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 108/375 (28%), Positives = 187/375 (49%), Gaps = 14/375 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLG 59 M+Y++I L + CE ++ P IALDTEFVRT TY+ L LIQ+ + A+IDPL Sbjct: 1 MDYKIINQQADLDAFCELLKTCPWIALDTEFVRTDTYFSILSLIQIQTHDGQAAIIDPLA 60 Query: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 I D + L +I+ +P++ K H+ +D+EV V G++P + DTQI F G A Sbjct: 61 IEDLTALWSIISNPNVRKVFHSARQDIEVLYQVSGQMPISIYDTQIACLFLQHGDLAGLA 120 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +V+ TL+K ++RT+W RPLT++Q EYA DV YL P+ KL E A Sbjct: 121 RVVKAELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLYEKLQAELTEQQ-QAAL 179 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 ++ + + + + A + I A +L + A LA+WR + A E + +V+ Sbjct: 180 EEDFQALLNEDLYKIDIKAAGKKIKAAKKLSRKNKAIAYKLAEWREQFAIENNKPKRWVM 239 Query: 240 REEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 +E L ++A+ P + L + + S ++ +G + L++ P D P+P + M Sbjct: 240 SDEVLVAIAKRPPKTPEALYKVPHIKASSVKNYGAEWIELIDDVFESP-DDWPKPTASSM 298 Query: 299 DMPGYRKAFKAIK-SLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + +I +LI ++ + ++ +A++ + +++ ++ GW Sbjct: 299 PATPQDEVLISIGFALIQQITIDYNVNPNNVANKSDLLKMIQSDSF---------MLRGW 349 Query: 358 RGELMAEALHNLLQE 372 RG L+ + LQ Sbjct: 350 RGLLLGQPFTQFLQN 364 >UniRef50_A6C450 Ribonuclease D n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C450_9PLAN Length = 395 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 4/375 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+ +I +LC+ +R +A DTEFV TY P+L L+Q +DP + Sbjct: 1 MSSPLIVQQSEFIALCDQIRDAGIVAFDTEFVSEFTYRPELSLLQFAVNGQAVAVDPYEM 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SP I+ D +H G E++ + G+ P+ L+D QI R + + Sbjct: 61 DDLSPWWDIMTDDDTVIVVHGGREEVRFCRHFSGKKPRKLVDLQIAEGLRSRSFPISYTA 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V E+RTDW RPLT++Q +YA DV ++L I E G L A Sbjct: 121 LVARVLNEKAGSKETRTDWRRRPLTQQQIKYALDDVKFVLKIWKIQEKELIDLGRLDWAE 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + M E+ WR ++ +L+ R+LA ++ L DWR A+E++ ++R Sbjct: 181 AEFQRMIDEVDSEFHREN-WRRVSGLHKLKPRELAIVRELFDWRDEVAQEKNQPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ L +AR P + +L + L+ + ++ + KAQ P D LPQ M N Sbjct: 240 DDLLIELARRKPATPQDLTATRDLNRKNMFKLAPEVVQRIAKAQQTPNDQLPQLMENPNT 299 Query: 300 MPGYRKAF--KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 + K + + + +S L+ + + L+ +H + + P L++GW Sbjct: 300 QQNQDEQVIGKLLGIALANRCAEMNVSQTLVGTSADLRHLVRYHVYKEISDERPRLMAGW 359 Query: 358 RGELMAEALHNLLQE 372 R E+ + L ++L Sbjct: 360 RAEVCGDLLTDVLDG 374 >UniRef50_C4Q1K8 Polymyositis/scleroderma autoantigen-related n=1 Tax=Schistosoma mansoni RepID=C4Q1K8_SCHMA Length = 830 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 76/314 (24%), Positives = 123/314 (39%), Gaps = 7/314 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +YQ + T D L + +++ IA+D E R++ LIQ+ +ID L + Sbjct: 213 SYQYVDTLDTLEQIMKSLSMCKYIAVDLEHHSYRSFLGITCLIQMSTLGSDYIIDALALR 272 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L + DP I K H DL FG L DT I A + + Sbjct: 273 DHLSILNEVFTDPKIVKVFHGSDSDLMWLQRDFGVYVVNLFDTGIAARLLQYG-RFSLSY 331 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +++ + G+ +K DW RPL EYA +D YLL I +++ E + L A+ Sbjct: 332 LLQRFVGIYANKKYQLADWRIRPLPNELIEYARSDTHYLLHIASRMCRELQDRDLLSVAI 391 Query: 181 DECRLMQMRRQEVV-APEDAWRDIT---NAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 + R + +R + D+ + RQL L+ L R AR D +++ Sbjct: 392 ERARQLCLRCYTKPVFNRLGYLDLYRQTGSSSFSHRQLYALENLYALRDSIARREDESLH 451 Query: 237 FVVREEHLWSVARYMPG-SLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML 295 +V+ L +A +P S G +R + L ++ A+ LP LP Sbjct: 452 YVLPNHMLKVIAEVLPRESSGIFACCNPIPPLVRKYVHDLHKIIVDARNLPITDLPLTSE 511 Query: 296 NLMDMPGYRKAFKA 309 + Sbjct: 512 EPRLSTQPNSQQQE 525 >UniRef50_A1SVE6 Ribonuclease D n=3 Tax=Psychromonas RepID=A1SVE6_PSYIN Length = 369 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 146/371 (39%), Positives = 212/371 (57%), Gaps = 7/371 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M +++ITT L + P I+LDTEFVRTRTY LGL+Q+ + LIDP+ + Sbjct: 1 MQFEIITTTAQLHDFIATLDGSP-ISLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAV 59 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S + + +I LHA SEDLE+ + G+L L DTQI +F S G+A Sbjct: 60 GDLSSFWQAIDNKNI--ILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMGASLGYAK 117 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MVE V +DK ESRTDW ARPL+E+Q YA DV YL P KL + E P Sbjct: 118 MVETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFE 177 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 EC+ + ++ P+ A++ + N ++L + LA ++ LA WRL A+ER+LA+NFVV+ Sbjct: 178 QECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVK 237 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 +HLW +A Y P SL +L L L +EIR HG+ +L ++ + + E P + L+D Sbjct: 238 ADHLWLLAYYQPTSLDDLRRLNLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDF 297 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL----KPQNNLPELISG 356 P Y+ K+++ I +E + + ELLAS+R IN+ L+W WKL + N P+L++G Sbjct: 298 PAYKSTVKSMRDKIQLCAEKYDLPLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTG 357 Query: 357 WRGELMAEALH 367 WR EL+ Sbjct: 358 WRFELIGHQFE 368 >UniRef50_C3ZLP6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZLP6_BRAFL Length = 832 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 11/293 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 ++TT + L + + + A+D E R++ L+Q+ +H ++D L + D Sbjct: 274 TLVTTLEELMDMNDKLTMCSEFAVDLEHHSYRSFQGFTCLMQVSTRDHDYIVDTLALRAD 333 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L DP + K H D++ FG + DT + G P A ++ Sbjct: 334 LHVLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNMFDTGQASHVLGLP-RHSLAYLL 392 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGWLP 177 + Y V DK DW RPL +YA D YLL I + E + L Sbjct: 393 KTYCDVEPDKKYQLADWRIRPLPSEMTQYAREDTHYLLHIYDCMRSELLDRGNNEANLLH 452 Query: 178 AALDECRLMQMRRQEVVAP-EDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLA 234 L+ R + ++R + + ED++ ++ N + ++QL ++L+ WR AR+ D + Sbjct: 453 NTLERSRQVCLQRYQKLLYTEDSYLNLLNKHKKTFNSQQLHAVRLVYRWRDTIARQEDES 512 Query: 235 VNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 +V+ L +A +P + +R H + + L+ +A+ +P Sbjct: 513 TGYVLPNHMLLVLAETLPKQIQGVFACCNPVPPLVRQHIEDVHRLLVQARDVP 565 >UniRef50_Q6C721 YALI0E04444p n=1 Tax=Yarrowia lipolytica RepID=Q6C721_YARLI Length = 738 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 13/295 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y + T++ L + + ++ IA+D E RTYY L+Q+ E +ID + + Sbjct: 220 EYIYVDTEEKLRDMVDHLKTQEEIAIDVEHHSMRTYYGITCLVQVSSREQDYIIDTIALR 279 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + +L DP I K LH + D++ FG L DT A G A + Sbjct: 280 NLEIFNEVLTDPKIVKVLHGATMDIQWLQRDFGLYIVSLFDTFHAAQALGL-KGHSLAFL 338 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++ Y+ K +DW RP++ Q YA AD +LL I +L + L+ Sbjct: 339 LQHYANFVTSKKYQLSDWRIRPMSPEQLLYARADTHFLLNIYDQLKNALVQKDKIEGVLE 398 Query: 182 ECRLMQMRRQEVVAPEDAWR-----------DITNAWQLRTRQLACLQLLADWRLRKARE 230 + R +R E + + + + + + ++ + L WR AR+ Sbjct: 399 KSRQTASQRYEYTGYDPRYYLKSFDYEGGINRLISQFHITGPSVSVAKALFLWRDSMARK 458 Query: 231 RDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALVEKAQT 284 D + +V+ L S+A MP + + S+ S +R + + +L +++ ++ Sbjct: 459 EDESTGYVMPNYLLVSLANRMPQTPEAVFSVSKSLPLLVRKNVEEILDVIKDSKD 513 >UniRef50_UPI000180BC5E PREDICTED: similar to exosome component 10, partial n=1 Tax=Ciona intestinalis RepID=UPI000180BC5E Length = 647 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 111/294 (37%), Gaps = 14/294 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + +AL L + ++ IA+D E R+Y L+QL ++D + + + Sbjct: 65 IFVDQVNALHKLMDELKEASEIAVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTIALRAE 124 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L + +P+I K H D+ FG L DT A G ++ Sbjct: 125 LNILNQVFANPNIIKVFHGADSDIIWLQRDFGIYVVNLFDTGQAARALGL-QRHSLDYLL 183 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS---GWLPAA 179 Y V DK DW RPL + YA D YLL + + ++ + G L Sbjct: 184 THYCNVQADKKYQLADWRIRPLPKEMLLYAQGDTHYLLYVYDMMRLDLVKTGDPGLLHKV 243 Query: 180 LDECRLMQMRRQEVVAPED--------AWRDITNAWQLRTRQLACLQLLADWRLRKARER 231 +D+ R + + E D + R +Q+ L+L+ WR AR+ Sbjct: 244 IDKSRDICCLKYEKPITNDTSHLVLLEKHKRRGGKKDFRPQQIEALRLIFAWRDGLARQE 303 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQT 284 D + +V+ L +A +P L +R H + LV +A+ Sbjct: 304 DESCGYVLPNHMLLQIAEILPREAQGVLACCNPIPPLLRQHVLAVHQLVVEARN 357 >UniRef50_A1B391 Ribonuclease D n=14 Tax=Alphaproteobacteria RepID=A1B391_PARDP Length = 401 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 111/384 (28%), Positives = 171/384 (44%), Gaps = 22/384 (5%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF---------DGEHL 52 + ++T LA CE +A P + LDTEF+R RTYY +L LIQ G Sbjct: 12 EIRTLSTTAELAEFCELAKAEPYVTLDTEFLRERTYYSKLCLIQAALPPASATKAAGGLS 71 Query: 53 ALIDPL-GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG 111 LIDPL PL + R K HA +DLE+F + G +P PL DTQI A CG Sbjct: 72 VLIDPLVEGLSLEPLYDLFRHKPTVKVFHAARQDLEIFFHDAGVMPDPLFDTQIAAMVCG 131 Query: 112 RPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 G+ ++V++ + LDKS TDW RPL++ Q YA ADV +L I L + + Sbjct: 132 FGEQVGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLRAIYEFLSAQLD 191 Query: 172 ASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARER 231 +G P +E ++ + PE+AW + R LA ++ LA +R A+ER Sbjct: 192 KTGRAPWLAEEVAVLLNPETYITRPEEAWERVRTRSG-SPRFLAVVRELARFRETYAQER 250 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTLPEDA 289 D+ V +++ L +A P S +L L + R +L+ V+ + Sbjct: 251 DIPRARVFKDDALIELASTKPLSEADLAKSRLLLRDARRGEIANGILSAVKAG--VEARD 308 Query: 290 LPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 LP+P PG ++ L+ ++ ++ L+AS ++ + + L Sbjct: 309 LPKPAPEEPGRPGNAALADLLRVLLKAKADAAGVAPRLIASASDLDAIASGARDL----- 363 Query: 350 LPELISGWRGELMAEALHNLLQEY 373 + GWR E+ L Sbjct: 364 --PALHGWRAEVFGHDALRLASGE 385 >UniRef50_UPI0000E469F8 PREDICTED: similar to exosome component 10 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E469F8 Length = 819 Score = 284 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 112/291 (38%), Gaps = 11/291 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 + ++ T L L +++ IA+D E R+Y L+Q+ EH ++D L + Sbjct: 264 FTLVDTVSKLEELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQISTAEHDYVVDTLELRS 323 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L DP I K H + D++ G + DT + G P AS+ Sbjct: 324 ELQMLNDAFTDPKIVKVFHGANMDIDWLQRDLGLYVVNMFDTHQASRSLGFPH-HSLASL 382 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-----WL 176 + Y V DK DW RPL E YA D YLL I + E G L Sbjct: 383 LSRYCQVEADKQYQLADWRIRPLPEEMLHYAREDTHYLLYIYHTMKNELIKRGNDRRNLL 442 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDI---TNAWQLRTRQLACLQLLADWRLRKARERDL 233 A LD+ + ++R + N +Q+ + L WR AR+ D Sbjct: 443 RAVLDQSTRICVQRYNKPIFTNDSHVTAFQKNRKIFNKKQMHAFKKLFAWRDSLARQEDE 502 Query: 234 AVNFVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQ 283 + +++ L+ +A +P G L ++ + + + +A+ Sbjct: 503 STGYILPMHMLFQIAEILPKDQGGILACCNPVPPLVKQNINEIYHFILEAR 553 >UniRef50_Q7QBT6 AGAP002300-PA n=3 Tax=Culicidae RepID=Q7QBT6_ANOGA Length = 969 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 73/290 (25%), Positives = 114/290 (39%), Gaps = 8/290 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-W 63 + + LA L ++A IA+D E R+Y L+QL ++D L + D Sbjct: 270 YVDQESQLAELVRELQAAKEIAIDLEHHSYRSYQGFTCLMQLSTRTKDYIVDALALRDEL 329 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L + DP K LH D+E G + DT A G +++ Sbjct: 330 HVLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVLQFS-RIGLQFLLK 388 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--WLPAALD 181 Y + DK+ DW RP+ E EYA D YLL I ++ E G L D Sbjct: 389 HYCNIDTDKAFQLADWRIRPIPENFIEYARKDTHYLLYIYDRMRNELLEKGESLLQTVYD 448 Query: 182 ECRLMQMRRQEVVA-PEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDLAVNFV 238 + M +R + ED +I + RQ+ + + WR + AR D + +V Sbjct: 449 KSTFMCKQRYQKPTMNEDTVMNIYRRSRYVFDHRQMYAFREVLYWRDQIARLEDESPGYV 508 Query: 239 VREEHLWSVARYMPGSLG-ELDSLGLSGSEIRFHGKTLLALVEKAQTLPE 287 + + +A +P + + S +R H L +V KA+ LP Sbjct: 509 LPQHMALDIASKLPREMQGIIACCTPVPSLVRQHLHALHKIVLKARELPA 558 >UniRef50_Q1YTB3 Ribonuclease D n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTB3_9GAMM Length = 374 Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 178/371 (47%), Gaps = 8/371 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 I LA LCE ++ +A+DTEF+R+ T++ +L LIQL DGE LID I Sbjct: 6 HWIDNSQQLAELCEQLQDATELAIDTEFMRSDTFFAKLALIQLSDGEQCWLIDTPAIEQL 65 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL A+L P +T H+ EDLEV V P+ L D+Q+ A S G+A +VE Sbjct: 66 QPLTALLNGPQLTLVFHSCGEDLEVLDQVLSVRPKKLFDSQVAAGIVNIGYSMGYARLVE 125 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + L K ++R+DWLARPL++RQ YAA DV YL I L+ E +E Sbjct: 126 NMLQIELGKEDTRSDWLARPLSDRQKRYAADDVLYLFRIYKLLLELLEQQQRQSWFAEEM 185 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 +Q E D + + AW+L LA L+ L +WR R AR D + +V++ Sbjct: 186 LDLQRVAAERREALDYYLRVKGAWRLDALSLAVLKRLCEWRERAARALDKPRSHIVKDNV 245 Query: 244 LWSVARYMPGSLGELDSLGL-SGSEIRFHGKTLLALVEKAQTLP-EDALPQPMLNLMDMP 301 L +A P + +L + ++ G+ +L + D LPQP+ Sbjct: 246 LLELANNKPTHMSQLHQIDDWYSRSVKRFGEQVLQEIANVDHNDLPDELPQPLSR----- 300 Query: 302 GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 361 K ++ I +++E I EL+ +++++ +L + K + L+ GWRG + Sbjct: 301 AVSDVMKKMRVSINELAENQAIPKELMCNKKELESILRTTVEGKCVWPV-RLVDGWRGSM 359 Query: 362 MAEALHNLLQE 372 + AL ++ Sbjct: 360 VIPALQLVIDS 370 >UniRef50_D2QXT8 3'-5' exonuclease n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QXT8_9PLAN Length = 399 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 105/376 (27%), Positives = 175/376 (46%), Gaps = 5/376 (1%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y+ I++D L C+ + + IA DTEFV +Y P+L LIQ+ +LA+IDPL + Sbjct: 1 MRYEHISSDQHLRDYCQVLASAEIIAFDTEFVSEDSYQPELCLIQVAADGNLAIIDPLEV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D SP +L +P +HAG E+ G P D QI A G + + Sbjct: 61 QDLSPFWNLLTEPGRETLVHAGREEFRFCFKGAGRRPHKWFDVQIAAGLIGMEFPASYGT 120 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + + G +L K E+RTDW RPL++RQ EYA DV L I L+ + E G L Sbjct: 121 LAQRLIGKSLPKDETRTDWRRRPLSQRQLEYALLDVLDLEQIRDVLVGKLEKLGRLSWLD 180 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E Q + +E E WR + + R LA ++ L WR +A+ R+ ++R Sbjct: 181 TELAAWQDQIEEAETGE-RWRRLGGTAGMNARTLAVVRELWTWRDGEAQRRNSPARRILR 239 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 ++ L +A+ + ++ G+ +I + + A VE+A L +D LP Sbjct: 240 DDLLLELAKRQTADPKRIRAVRGMERGDILRYMPKITACVERAMALRDDQLPGTERRSAR 299 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK--PQNNLPELISGW 357 P + + + + + ++A L+ + + + L+ + KL +P L GW Sbjct: 300 -PQLNLLGQFLSTALGSICRRSSVAASLVGTAQDVRDLIAYRLKLGGFAPGEVPTLAQGW 358 Query: 358 RGELMAEALHNLLQEY 373 R E++ + + +L+ Sbjct: 359 RAEVVGQVIDDLISGE 374 >UniRef50_D0KY39 Ribonuclease D n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY39_HALNC Length = 374 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 114/373 (30%), Positives = 175/373 (46%), Gaps = 17/373 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++I + AL +C+ + +DTEF+R TY+PQL L+Q+ + + LIDPL + Sbjct: 14 RLIQSTSALHDVCDQIAESTWATIDTEFMRESTYFPQLCLVQIATPDAIWLIDPLAVP-L 72 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +PL L S HA +DLE+ G LPQ L D+QI AAF G G+A++V Sbjct: 73 APLWHELNRTSSPLVFHAAEQDLELIYLDSGALPQTLRDSQIAAAFLGLGEQIGYANLVN 132 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 V LDKS+SRT+W RPLT Q YAA DV +L + L + L +EC Sbjct: 133 RLLHVELDKSQSRTNWAQRPLTAEQQHYAADDVRFLRSMYPLLREQLATKNRLAWFDEEC 192 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + ++ WR + LR Q A L + WR ARE +L +V+ +E Sbjct: 193 AALSDPQRFQPQMTGLWRKVRGQQALRAAQRAVLDAITTWREAWARELNLPRRWVLSDEQ 252 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFH-----GKTLLALVEKAQTLPEDALPQPMLNLM 298 +A + L+ R H L A +E+A+ LP +A PQ Sbjct: 253 ALELAG-----SRQFRPNLLNPKNARHHLSVEQVDELRATIERAKQLPPEAFPQWQAYQR 307 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 P +++L+ + S+ +IS LLA+ + +L+ + L +L +GWR Sbjct: 308 TDPETNAILNRMQALVQERSKLMEISPSLLATTDDMLRLIR------APDALNKLTTGWR 361 Query: 359 GELMAEALHNLLQ 371 +++ L +LL Sbjct: 362 CDVIGLPLKSLLD 374 >UniRef50_Q55AW0 3'-5' exonuclease n=1 Tax=Dictyostelium discoideum RepID=Q55AW0_DICDI Length = 1195 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 121/323 (37%), Gaps = 32/323 (9%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 + + T L L E + IA+D E RTY L+Q+ LID L + Sbjct: 246 FTWVETVRQLEELVEKLIHCQEIAIDLEHHSYRTYQGFTCLMQISTRSEDFLIDTLLLRS 305 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +PSI K LH D++ FG + DT + P S A + Sbjct: 306 HIHMLNQVFTNPSIVKVLHGSDSDIKWLQRDFGVYIVNMFDTGQASRILEYP-SASLAFL 364 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG------- 174 ++ Y + +K DW R L E +YA D YLL I +L E + G Sbjct: 365 LKFYCAIDANKKYQLADWRIRKLPEEMIKYAREDTHYLLYIYDRLRNELISKGNKNLGSS 424 Query: 175 -----------------WLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLR----TRQ 213 L L R + + R E +D I A +L Q Sbjct: 425 GTSTNTSTSTTTQLNNHLLLEVLRRSRELSLLRYEKDILDDN-SHINFAKKLNLQYSPTQ 483 Query: 214 LACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHG 272 L L++L WR AR+ D +V +++ + + ++ P S+ EL + I+ H Sbjct: 484 LNVLKVLYHWREGLARDEDESVRYILPNQMMLTIVERQPTSVQELLTLCSPIPPSIKQHS 543 Query: 273 KTLLALVEKAQTLPEDALPQPML 295 L+ + KA+ P + Sbjct: 544 HQLIQEILKARIEDPSKQPSFIP 566 >UniRef50_Q6AJF4 Related to ribonuclease D n=1 Tax=Desulfotalea psychrophila RepID=Q6AJF4_DESPS Length = 374 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 108/362 (29%), Positives = 164/362 (45%), Gaps = 4/362 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDW 63 +I+T + L + A+ LDTEFV RTYYPQLGLIQ+ E IDPL I D Sbjct: 6 IISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSIKDL 65 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 SPL +L D + K LH +DL + G PQ + DT++ A F G + +V Sbjct: 66 SPLGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSISTISLLQLVS 125 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 E LDKSE+RT+WL RPLTE+Q Y+ DV YL L+ + +E Sbjct: 126 EQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYLRATRVILLSKIIGPKIKSWLQEEL 185 Query: 184 RLMQMRR-QEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 L+ +A E ++ + +L + + Q +A WR +KARE + V++++ Sbjct: 186 NLLNNPANYSTIADESRYKKVKGVNKLDRKSIGVAQEIATWREQKARELNRPRGHVIKDD 245 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L +A P EL + +S +G + +A E LP Sbjct: 246 ILLEIAAIRPTRPEELANTAISTKAAERYGNDICQATARALNKKEVDLPHQQKRSQLSSQ 305 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 + A +K LIT + I LL + ++ +++ +K K + GWR E + Sbjct: 306 EKGALAQLKELITLKCDILGIDPALLGNSNELKKIIQTLYKGKTTHMRQSF--GWRKEFL 363 Query: 363 AE 364 + Sbjct: 364 KD 365 >UniRef50_Q2G8P2 Ribonuclease D n=10 Tax=Sphingomonadales RepID=Q2G8P2_NOVAD Length = 405 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 109/378 (28%), Positives = 177/378 (46%), Gaps = 13/378 (3%) Query: 1 MNYQ-MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLG 59 M +ITT +ALA LCE + + +DTEF+R TY+P+L L+Q+ D + A IDPL Sbjct: 1 MKIHPLITTTEALADLCERLAKADFVTVDTEFMRENTYWPELCLVQIADDKEAAAIDPLA 60 Query: 60 IT-DWSPLKAILRD-PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 D SPL +L D + K HAG +D+E+ N+ G+ P P+ DTQI + G Sbjct: 61 PGLDMSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKTPHPIFDTQIAMMAVSQSEQIG 120 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 ++++VE + G+++DK TDW RPLTERQ EYA DV +L I KL+ +G Sbjct: 121 YSNLVESWLGLSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGE 180 Query: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 E + + W+ I + L L+ LA WR R+A ++++ Sbjct: 181 WLDIEMEKLADPENYRTDMDTVWQKIRAPSR-NPAVLGRLKSLAAWREREAMDKNIPKGR 239 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH--GKTLLALVEKAQTLPEDALPQPML 295 ++R+E L +A + P +L + + + + G+ L+ + ++ L + +P Sbjct: 240 IMRDETLADIASHPPREQHDLAKVRGLSAGWKDNDIGRRLMQTLADSKPLTDAEMPPKAP 299 Query: 296 NLMDMPGYRKAF-KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 + +K L+ S I+A LLA + L + P ++ Sbjct: 300 RGAPLGKEGALVADLLKLLLKIRSREIDIAARLLARTDDLELLAAGQRRNLP------IL 353 Query: 355 SGWRGELMAEALHNLLQE 372 GWR E L++ Sbjct: 354 EGWRFEQFGRDALELVEG 371 >UniRef50_UPI0001C31C49 Ribonuclease D n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C49 Length = 396 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 113/372 (30%), Positives = 182/372 (48%), Gaps = 12/372 (3%) Query: 9 DDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-------HLALIDPLGIT 61 DD +A + E RA + +DTEF+ Y L L+Q+ + +AL DP Sbjct: 12 DDEIARVAELARAAGRLGIDTEFMSEGRYRALLCLVQVAVDDADAPNGVRIALFDPFDKL 71 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D++PL A+L DP I LHA +D+ + + + + DTQ+ A F G G+ ++ Sbjct: 72 DFAPLAAVLADPEIEIVLHAARQDVAIMRRAWRTDVREVFDTQVAAGFAGYGAQTGYGNL 131 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 + G + K+ S T W ARPLTE Q YAA DV +LL ++ L + A G L A + Sbjct: 132 LGAALGQRVGKTASYTRWDARPLTEEQLSYAAEDVLHLLQLSDALHDKLSAHGRLQWAQE 191 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 ECR M E PE A+ + + QL R A + +A WR R A++ D V ++ + Sbjct: 192 ECRRMDEATDER-DPETAYERLPRSGQLDPRARAVAREVAAWRERTAQQEDKPVGTILPD 250 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L +A+ P S EL+ + GL G +R G+ ++ VE+ + A + Sbjct: 251 PALVEIAKRKPSSPRELEQIRGLHGGHLRRRGQAIVEAVERGRAAEPIA--REARRPGGE 308 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 G ++++I + +++ EL+ASR + Q++ + PQ ++ +SGWR E Sbjct: 309 QGDAPLIALVEAVIRTRAIEAELAYELVASRADLEQIVIAARRGDPQPSV-RALSGWRRE 367 Query: 361 LMAEALHNLLQE 372 L+ E + LL Sbjct: 368 LVGEEIAELLAG 379 >UniRef50_UPI0001926123 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926123 Length = 758 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 116/311 (37%), Gaps = 11/311 (3%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 N I TD+ L L ++ IA+D E R++ L L+Q+ +ID L + Sbjct: 240 NLTYIDTDEGLNDLINKLKKVKEIAVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTLALR 299 Query: 62 -DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + + I DP+I K +H D+ FG + DT A + A Sbjct: 300 EEMYKINEIFSDPNILKVMHGADSDIGWLQRDFGVYVVNMFDTGQAARTL-HEDRFSLAY 358 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-----W 175 ++ +Y V K DW RP+ + YA D YLL + L + G Sbjct: 359 LLSKYCNVDAQKQYQLADWRIRPIPKEMILYAQEDTHYLLYVYDILRNQLLNKGNANKNL 418 Query: 176 LPAALDECRLMQMRRQEVVA-PEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERD 232 L + + + + D++ +L +QL C +LL +WR + ARE D Sbjct: 419 LKSVYSKSTSICATMYQKPLFNNDSYIATYEKYRGRLNPQQLECFRLLFEWRDKTAREED 478 Query: 233 LAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP 291 ++ + + L+ +A +P + ++ + LV A+ Sbjct: 479 ESIVYTLPNHMLFQIAENLPKEPQGVIACCNPVPPLVKQRNTEIHLLVMLAREFDPQKCH 538 Query: 292 QPMLNLMDMPG 302 Q N D+ Sbjct: 539 QSSNNTNDLQN 549 >UniRef50_B3RZJ7 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3RZJ7_TRIAD Length = 535 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 119/294 (40%), Gaps = 10/294 (3%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DW 63 +IT D L L E +++ A+D E R+Y + L+Q+ + ++D L + + Sbjct: 241 VITEKDELKDLLETLKSVTEFAVDLEHHSYRSYQGFVCLMQISTRDADYIVDTLALRSEL 300 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L + DP I K LH D+ F + DT A P + + ++ Sbjct: 301 WTLNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDTGQAARLLQFP-RFSLSYLLL 359 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS----GWLPAA 179 +Y VT +K DW RPL + +YA D YLL I L E + L + Sbjct: 360 KYCNVTANKGLQLADWRIRPLPQEMVQYAREDTHYLLYIFDVLTNELMNASTSVDLLKSN 419 Query: 180 LDECRLMQMRRQEVV-APEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 D + + +R E + ++ ++ + + +Q L WR AR+ D + N Sbjct: 420 FDRSKKICLRTYEKPVFNKKSYLNLLYKHKGRFNHQQNYAFAKLYSWRDSVARDNDESAN 479 Query: 237 FVVREEHLWSVARYMPGSLG-ELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDA 289 FV+ L +A +P L + +R + + +++KA+ + Sbjct: 480 FVLPNHMLLQIAENLPREPQGILACCNPIPTLVRQYIGDIHQIIKKARERSINE 533 >UniRef50_D2VPJ2 3'-5' exonuclease and HRDC domain-containing protein n=1 Tax=Naegleria gruberi RepID=D2VPJ2_NAEGR Length = 956 Score = 274 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 68/303 (22%), Positives = 117/303 (38%), Gaps = 16/303 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 I+T + L L + A A+D E R++ + L+Q+ LID L + Sbjct: 343 TWISTVEDLHKLATILEGQDAFAIDLEQHSYRSFQGFVCLMQISTRSEDFLIDTLELRQH 402 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + P I K +H D+ F L DT P A ++ Sbjct: 403 MHILNSSFTHPKIVKVMHGSDCDILWLQRDFAIYCVNLFDTGQACRTLALP-GCSLAYLL 461 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-------- 174 + Y G+ DK DW RPL +YA D YLL I +L + + Sbjct: 462 KHYCGIDADKKYQLADWRVRPLPSEMVKYAREDTHYLLYIYDRLRQDIFNTKPNTSTVSG 521 Query: 175 --WLPAALDECRLMQMRRQEVVA-PEDAWRDITNAWQLRTRQLA--CLQLLADWRLRKAR 229 + L + + MRR E E ++ + + T ++ +++L WR AR Sbjct: 522 FERMEEVLVRSKELCMRRYEKELFSETSYLSLIKFSRGCTASISENVIRVLFKWRDTVAR 581 Query: 230 ERDLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPED 288 + D ++ +V+ + + S+A+ P + + L +R K ++ L+ KA + Sbjct: 582 KDDESIRYVLPDHMILSIAQEAPTEVSQLLSCCNPVPKLVRRDAKIIVDLITKALQSRDM 641 Query: 289 ALP 291 P Sbjct: 642 PEP 644 >UniRef50_B4X4T0 Ribonuclease D n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4T0_9GAMM Length = 375 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 185/370 (50%), Gaps = 13/370 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y + A++ + A + LDTEF+R RT++PQL L+Q+ DGE + LID + Sbjct: 19 MAYLWCEDNQAISEWQGGLTAGTPLYLDTEFMRERTFWPQLALVQVHDGEQIRLIDTTRV 78 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L + + T +HA SEDLE G+ P + DTQI AA G M WG+ Sbjct: 79 -DGPTLSPVFQ--QHTLVMHACSEDLEAIATFTGQYPAAIEDTQIAAALSGEDMQWGYQK 135 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ GV L K +RT+WL RPL++ Q YA DV YL + A L + G Sbjct: 136 VVQMLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAAILAERLDKLGRRAWWQ 195 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC + + + V +DAWR++ A L+ LA L L WR + ARER+L +FV++ Sbjct: 196 EECERLLNQARSVTPAQDAWRNVKGAGLLQGESLAVLAALTPWRDQMARERNLPKSFVLK 255 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L +AR G L LG +IR G LLAL+E+ + L Sbjct: 256 DAQLLDLARASRSDRGLLADLGFHPKQIRRDGDALLALMEEGRRQTP----PDPLPGPPD 311 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +K K +++ + ++E + ++L RR + L+ + +PE ++GWR + Sbjct: 312 AAQKKLAKTLRNRVGVIAEEMDMKPDVLMRRRWLEALIRH------PDRVPEPLTGWRHD 365 Query: 361 LMAEALHNLL 370 ++ + L LL Sbjct: 366 IVTQPLLELL 375 >UniRef50_Q0VNN2 Ribonuclease D n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VNN2_ALCBS Length = 357 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 122/370 (32%), Positives = 186/370 (50%), Gaps = 13/370 (3%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M Y + ++ ++ A + LDTEF+R RT++PQL L+Q+ DG + LID + Sbjct: 1 MAYLWCEDNKEISEWQASLAAGSRLYLDTEFMRERTFWPQLALVQVHDGVRIRLIDTTEV 60 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L + ++ T +HA SEDLE G+ P + DTQI AA G M WG+ Sbjct: 61 -DGPTLLPVFQN--HTLVMHACSEDLEAIATFTGQYPAAIEDTQIAAALSGEDMQWGYQK 117 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V+ GV L K +RT+WL RPL++ Q YA DV YL + L + G Sbjct: 118 VVQMLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWE 177 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +EC + + + V P+DAWR++ A L+ LA L LA WR + ARERDL +FV++ Sbjct: 178 EECARLLKQARSQVLPQDAWRNVKGAGLLQGESLAVLAALAPWRDQMARERDLPKSFVLK 237 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L +AR G L LG +IR G LLAL+E+A+ L Sbjct: 238 DAQLLDLARTNRTDRGLLADLGFHPKQIRRDGDALLALIEQARGQTP----PDPLPGPPD 293 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +K K ++S + ++E + ++L RR + L+ +PE ++GWR + Sbjct: 294 MAQKKLAKTLRSRVAIIAEELNMKPDVLMRRRWLEALIRH------PERVPEPLTGWRND 347 Query: 361 LMAEALHNLL 370 ++ + L LL Sbjct: 348 VVTQPLLELL 357 >UniRef50_Q01780 Exosome component 10 n=55 Tax=Eumetazoa RepID=EXOSX_HUMAN Length = 885 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 121/319 (37%), Gaps = 13/319 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 I++ D L L E + A+D E R++ L+Q+ +ID L + D Sbjct: 289 HFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSD 348 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L L DP+I K H D+E FG + DT A ++ Sbjct: 349 MYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG-RHSLDHLL 407 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-----WLP 177 + Y V +K DW RPL E YA D YLL I K+ +E G L Sbjct: 408 KLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQ 467 Query: 178 AALDECRLMQMRRQEVVA-PEDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLA 234 R + +++ ++++ ++ L T+QL QLL WR + AR D + Sbjct: 468 VVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDES 527 Query: 235 VNFVVREEHLWSVARYMPGSLG-ELDSLGLSGSEIRFHGKTLLALVEKAQTLP--EDALP 291 +V+ + +A +P + +R + L+++A+ +P + + Sbjct: 528 YGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVA 587 Query: 292 QPMLNLMDMPGYRKAFKAI 310 + +P + + Sbjct: 588 AGVKKSGPLPSAERLENVL 606 >UniRef50_A0Z9G7 Ribonuclease D n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z9G7_9GAMM Length = 380 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 115/375 (30%), Positives = 181/375 (48%), Gaps = 13/375 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + + AL + + +A+DTEF R T+YP++ LIQL L+DPL + D Sbjct: 10 RWVRDTTALNEMVALISQEAFVAVDTEFRRRDTFYPEVALIQLAAAGQCWLLDPLTLDDT 69 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL+ + R + K LH+ SEDLEVF G LP+P+IDTQ AA G + +V Sbjct: 70 QPLQKLFRQTDLIKILHSASEDLEVFERWLGVLPRPMIDTQKAAAMLGLGFGLSYRDLVH 129 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + + K E+++DWL RPLT+ QC YA DV +L L EASG+L L+E Sbjct: 130 DLLSIDVAKDETQSDWLVRPLTDAQCHYAMQDVTFLAQCWPILEARAEASGYLSWILEES 189 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 M V +AW+L ++QLA L L DWR KAR+R+ N+++ ++ Sbjct: 190 AAM------VTGGRGPLAKFKSAWKLNSQQLAVLLDLIDWRESKARDRNRPRNWILHDKV 243 Query: 244 LWSVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 + +A+ +P S+ +L + +R GK L+ L+E A P P+ + Sbjct: 244 ILDLAKRIPTSMPQLAAADSMPAGVVRREGKQLMTLIESASERGLSDPPAPIPAPSNS-R 302 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 RK K++ + ++ ++ E+L R++ L + P GWR + Sbjct: 303 VRKLAKSLAPAMAALALELGMNVEILMPSRELEMLAS-FATGDGSVPRPVHWQGWRKAAV 361 Query: 363 AEALH----NLLQEY 373 + L LL E+ Sbjct: 362 IQPLELEAQRLLGEH 376 >UniRef50_Q17951 Protein C14A4.4a, confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q17951_CAEEL Length = 876 Score = 271 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 119/320 (37%), Gaps = 7/320 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 MI T + L +L + + + A+D E + R+Y LIQ+ + +IDP I Sbjct: 279 TMIDTKEKLEALTKTLNSVKEFAVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDH 338 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L +P I K H D+ +G L DT + P + A + Sbjct: 339 VGMLNEPFANPRILKVFHGSDSDVLWLQRDYGVHVVNLFDTYVAMKKLKYPK-FSLAYLT 397 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW--LPAAL 180 ++ V LDK DW ARPL YA D YLL L + L Sbjct: 398 LRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLKQDTKDLANVY 457 Query: 181 DECRLMQMRRQEVV--APEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 E + ++ + P+ +I + L TRQ L L WR AR D + +FV Sbjct: 458 SESSDLCIKVYKKPVFNPKGYLTEIKFRFTLNTRQDYALTHLFKWRDVVARAEDESPHFV 517 Query: 239 VREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 + + S++ +P +G + ++ +L ++ +A+ + + + Sbjct: 518 LPNHMMLSLSETLPRDVGGIYACCNPLPYFVKQRTGDILKIIVEARDVKLEKVGLSAKER 577 Query: 298 MDMPGYRKAFKAIKSLITDV 317 D R IT V Sbjct: 578 NDAQEARGVMNDTMDHITSV 597 >UniRef50_A9V5N1 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V5N1_MONBE Length = 837 Score = 271 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 111/288 (38%), Gaps = 15/288 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + T +AL L E +++ +A+D E RTY L+QL LID L + D Sbjct: 267 TWVGTREALVGLIERLKSVSELAIDLEAHSYRTYQGFTCLMQLSTRSEDYLIDTLALRDD 326 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I DP+I K LH D+ + DT P A ++ Sbjct: 327 LKLLNVIFADPAILKVLHGADSDILWLQRDHSLYIVNMFDTGQATRVLNFP-RHSLAWLL 385 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGWLP 177 + Y DK DW RPL+E YA D +LL I +L E E + L Sbjct: 386 QHYCNFKADKKYQLADWRVRPLSEEMLHYARCDTHFLLYIYDRLHSELLAQGNEQANLLR 445 Query: 178 AALDECRLMQMRRQEVVAP-----EDAWRDITNAWQLRTRQLACLQLLADWRLRKARERD 232 A + + ++R E EDA ++ L + L WR + AR+ D Sbjct: 446 AVYQRSKELCLQRYEKPFYSQATAEDALNRMSR--SLVPSAVELFMALHAWRDQVARDED 503 Query: 233 LAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALV 279 + +V+ + L +A P G+ L +R + + + ++ Sbjct: 504 ESPRYVLPDHMLLELASRAPTETGQILACCQPIPPLVRVNVQLIQDII 551 >UniRef50_B0U173 Ribonuclease D n=18 Tax=Francisella RepID=B0U173_FRAP2 Length = 366 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 178/366 (48%), Gaps = 8/366 (2%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I T+ L ++ E +++ IA+DTEF RTYYP+L L+Q+ + LID L D+S Sbjct: 2 IINTNKQLNNVIEILKSTSQIAVDTEFYWMRTYYPELCLVQIATENEIFLIDTLEDLDFS 61 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 LK I D +I K +H+ + D+ + F + DTQ+ A+F G +++++ Sbjct: 62 KLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVNNIFDTQLAASFLGTQSQISLKALLKD 121 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 + ++K +DW RPL+++Q +YA DV +L+ I L + + + +E Sbjct: 122 ILDIEMEKESQFSDWRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQTDYKQYFYEE-- 179 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 L+++++ E E+ I N + + L+A WR A+++++ V F+ + L Sbjct: 180 LLEIQKTEFNTVENIHNKIGNIQKFSEKTQKNAILVAQWRESMAQQKNIPVRFIFDNKIL 239 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 +++A P SL D+ L + K+++ ++ Q L L Q + Sbjct: 240 YAIAHKNPKSLNSFDTEELK-KLKPWIKKSIITVINSKQNLEHINLEQKSGAKIST---- 294 Query: 305 KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAE 364 + I + + + K A L+ASR+ I + ++ + P + +L+ GWR E++ + Sbjct: 295 EINDKITNFFDIETRSFKFDASLIASRKDIRSVA-YNLSIDPNYSSNKLLVGWRYEIVGK 353 Query: 365 ALHNLL 370 L + Sbjct: 354 KLKEYI 359 >UniRef50_A2R7H4 Contig An16c0130, complete genome n=16 Tax=Eurotiomycetidae RepID=A2R7H4_ASPNC Length = 782 Score = 270 bits (690), Expect = 7e-71, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 138/369 (37%), Gaps = 23/369 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E ++A IA+D E +Y + L+Q+ + ++D L Sbjct: 229 TFVDTLEGVKEMLEELKAAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWRE 288 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L + DP+I K LH S D+ G + DT A P + Sbjct: 289 ELQVLNEVFTDPNILKVLHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKR-SLKFL 347 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA-----SGWL 176 ++++ DK DW RP+ E +YA +D YLL I + E + + Sbjct: 348 LQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIYDHIRNELVENSLPDNNLI 407 Query: 177 PAALDECRLMQMRRQEVVAPEDA-------WRDI--TNAWQLRTRQLACLQLLADWRLRK 227 L++ + ++ E + A W D+ N+ + Q A + + WR Sbjct: 408 DYVLEQSKKEALQVYERPVYDAATGQGPGGWYDLLSRNSVVVNREQFAVFKAVHQWRDEV 467 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLP 286 ARE D V V + L+ VA MP LG L +L ++ LL +++KA+ Sbjct: 468 AREEDEGVQCVFPKHVLFRVAHTMPLDLGTLFRTLSPVTPIVQNRAVDLLEVIKKAKDEG 527 Query: 287 ED--ALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL 344 D + A + + ++ + SR +++Q + Sbjct: 528 ADGPEWRDVYVKPTRGTPAAPATQPVDVPSPTPADEANLPT---VSRYEVSQFWGSVLES 584 Query: 345 KPQNNLPEL 353 + +P Sbjct: 585 QEPPTVPAY 593 >UniRef50_B6K2U5 Exosome complex exonuclease RRP6 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K2U5_SCHJY Length = 782 Score = 270 bits (690), Expect = 8e-71, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 131/363 (36%), Gaps = 22/363 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + ++L S+ E ++ IA+D E R+Y + L+Q+ ++D L + + Sbjct: 218 IWVDNSESLHSMLEELKQATEIAVDLEHHDYRSYSGFVCLMQISTRNQDWIVDTLELREE 277 Query: 64 SPLKAI-LRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 I DP I K LH + D+ FG L DT G G A ++ Sbjct: 278 LECLNIVFTDPKIIKVLHGATMDVIWLQRDFGLYLVGLFDTYYATKALGFE-GHGLAFLL 336 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET------EASGWL 176 ++Y DK DW RPL + +YA +D +LL + L VE + Sbjct: 337 KKYCQFEADKRYQMADWRIRPLPKEMLKYAQSDTHFLLYVFDCLRVELLEQSSRRKEDLM 396 Query: 177 PAALDECRLMQMRRQEVVAPE-------DAWRDITNAWQLR----TRQLACLQLLADWRL 225 + + +RR E A + D WR + W LA + L WR Sbjct: 397 QYVVKSSDDVALRRYEREAYDEIYGLGTDGWRHVLTKWGSSKIIGREALAVFKSLHRWRD 456 Query: 226 RKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQT 284 + AR D +V +V+ L +A MP +L S +R + ++ +++ A+ Sbjct: 457 QVARNEDESVRYVMPNHLLVKLAASMPSDPSDLYTSARQLPPLVRMYANEIIEVIQNARE 516 Query: 285 LPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKL 344 D + + + +V I EL Q ++ L Sbjct: 517 DEVKRATTDEQRTEDTVMQDQLVTPVTT--REVGAEIVIHTELFEPSTQNKAIIESMSTL 574 Query: 345 KPQ 347 Sbjct: 575 NSP 577 >UniRef50_C4QXG4 Exonuclease component of the nuclear exosome n=1 Tax=Pichia pastoris GS115 RepID=C4QXG4_PICPG Length = 717 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 117/304 (38%), Gaps = 19/304 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + T+ + + + + IA+D E RTYY + L+Q+ ++D L + Sbjct: 213 IYVETEQQVGDMIDTLSKADVIAVDLEHHDLRTYYGLVCLMQISTRNQDYIVDTLKLRFK 272 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL + DPSI K H D+ G L DT + G P A ++ Sbjct: 273 LQPLNKVFTDPSIVKVFHGAFMDIIWLQRDLGLYVVSLFDTFHASKLLGFPK-HSLAYLL 331 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E Y+ K DW RPLT+ YA +D +LL I +L SG L L + Sbjct: 332 ETYAKFKTSKKYQLADWRVRPLTKPLLAYARSDTHFLLYIFDQLNNMLIESGKLSQVLYD 391 Query: 183 CRLMQMRRQEVV----------------APEDAWRDITNAWQLRTRQLACLQLLADWRLR 226 R + +RR E ++ W+ + + + + L +WR Sbjct: 392 SRQVALRRFEYTKFRPNFPTPLVVSPLNDRKEPWKQLLYLYNIPRSRQPVFIALYNWRDE 451 Query: 227 KARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTL 285 ARE D + +V+ + L ++ P + L S + ++ + L+ +++ Sbjct: 452 IAREDDESTRYVLPNQLLATITSISPTDVSSLMSCSNIRTPYLKKYATELVEIIKSTLKE 511 Query: 286 PEDA 289 + Sbjct: 512 GAEN 515 >UniRef50_Q5GT27 Ribonuclease D n=10 Tax=Wolbachia RepID=Q5GT27_WOLTR Length = 399 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 174/373 (46%), Gaps = 17/373 (4%) Query: 5 MITTDDALASLCEAV--RAFPAIALDTEFVRTR-TYYPQLGLIQLFDGEHLALIDPLGIT 61 +I T L +CE + + IA DTEF+R TYYP+L LIQ+ GE ++D L Sbjct: 2 LINTTSELEDICEELIAKKPKFIAADTEFIRNHLTYYPRLSLIQISYGEKSFIVDALAPE 61 Query: 62 -DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS-WGFA 119 D S +K I+ + ITK H+ +D+E VF +P P+ DTQ+ A FC G++ Sbjct: 62 VDLSFIKKIMLNREITKVFHSCRQDIESLFTVFKCIPAPIFDTQVAAMFCHYYHDFIGYS 121 Query: 120 SMVEEYSGVTLDK-SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 +VE+Y GV LDK +DWL RPL++ Q +YA +DV +L + L E SG + Sbjct: 122 KVVEQYQGVVLDKIKAKNSDWLRRPLSKDQLDYAISDVVHLYDLHQILCDRLEESGRMGW 181 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 +E + + + +P+DAW+ I ++ + + ++ +++W+ A+ ++ N + Sbjct: 182 FHEEMESVVDINKYLHSPKDAWKRIKFNYEANPKLMIIIKAVSEWQETLAQRYNINRNKI 241 Query: 239 VREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 V + + E+ L + + LL ++ ++ + Q + Sbjct: 242 VNNAVVAGFFEKNVEHVDEVLD-DLRKNTKNIREEDLLEFIDVFNENEKNFVQQ--DYTL 298 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 R F + ++ + + IS +L++S+ ++ + +L GWR Sbjct: 299 SNSYDRSVFDMLSIILESKCKENNISRKLVSSKDEL--------VGSMSGQVDKLFKGWR 350 Query: 359 GELMAEALHNLLQ 371 + ++ + L Sbjct: 351 YDFFGRSVKSFLN 363 >UniRef50_UPI0001793421 PREDICTED: hypothetical protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793421 Length = 739 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 130/347 (37%), Gaps = 12/347 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + T++ L + + +A+D E RTY L+Q+ +ID L + D Sbjct: 209 FVEVYTEEQLNLMVSHLITVNELAIDLEAHSYRTYQGFTCLMQISTRNADYIIDTLYLRD 268 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L I +P++ K H D+ G + DT A G + Sbjct: 269 KLHVLNEIFTNPAVVKVFHGADSDIPWLQRDLGLYVVNMFDTYQAAKILNFS-RKGLEFL 327 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-----GWL 176 ++ Y V DK+ DW RPL+ YA D YLL + + + A ++ Sbjct: 328 LKHYCNVDADKTFQLYDWRTRPLSTEAIFYARCDTHYLLYVYDMIKKDLMAMSTNQCNYI 387 Query: 177 PAALDECRLMQMRRQEV-VAPEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDL 233 + R EV + +D+ + + +Q+ L+ L WR + ARE D Sbjct: 388 ELVFQRSADVCKSRYEVNILRDDSHLSMYKRSKKMFDIQQMYALKHLYAWRDKLARELDE 447 Query: 234 AVNFVVREEHLWSVARYMPG-SLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQ 292 + +++ L ++ +P S G L +R + +V+ A+ + + Sbjct: 448 SPGYILPNHMLLKISEMLPKESFGILACCSPVPPLVRQCLHEIHYIVKNAKEQTFENAEK 507 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLAS-RRQINQLL 338 + K + D S++ + A+ L + +N+L+ Sbjct: 508 LNEDKSFSQDVIKHIDVDMISLHDYSKSKETEADSLPTLLNDLNKLV 554 >UniRef50_Q12149 Exosome complex exonuclease RRP6 n=9 Tax=Saccharomycetaceae RepID=RRP6_YEAST Length = 733 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 128/339 (37%), Gaps = 20/339 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + T L S+ E ++ IA+D E R+YY + L+Q+ E L+D L + + Sbjct: 214 IWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLREN 273 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +PSI K H D+ G L DT + G P A ++ Sbjct: 274 LHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP-RHSLAYLL 332 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E ++ K DW RPL++ YA AD +LL I +L + S L L E Sbjct: 333 ENFANFKTSKKYQLADWRIRPLSKPMTAYARADTHFLLNIYDQLRNKLIESNKLAGVLYE 392 Query: 183 CRLMQMRRQEVVAP---------------EDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 R + RR E E W+ + + + + ++ L WR Sbjct: 393 SRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQYNIPPEREVLVRELYQWRDLI 452 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKA-QTL 285 AR D + FV+ + L ++ Y P + + SL +R + K L L+ A + + Sbjct: 453 ARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRNI 512 Query: 286 PEDALPQPMLNLMDMPGYRKAFKAIKS-LITDVSETHKI 323 + + + I I DV E + Sbjct: 513 KNTNEEATPIPSSETKADGILLETISVPQIRDVMERFSV 551 >UniRef50_A3GG05 Ribosomal RNA processing 3'-5' exonuclease n=8 Tax=Saccharomycetales RepID=A3GG05_PICST Length = 792 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 80/357 (22%), Positives = 140/357 (39%), Gaps = 27/357 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + T + L + E ++ IA+D E R+YY + L+Q+ + + +ID L + D Sbjct: 234 TWVDTVEELQKMVEELKKSSEIAVDLEHHDYRSYYGIVCLMQISNRDQDWIIDTLALRDD 293 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +P I K H D+ G L DT + G P + A ++ Sbjct: 294 LECLNTVFTNPHIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASKSLGFPK-FSLAYLL 352 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--WLPAAL 180 E ++ K DW RPL+ YA +D +LL I +L + +G L L Sbjct: 353 ETFAHFKTSKKYQLADWRIRPLSPPMMAYARSDTHFLLSIFDQLKNKLIDAGNEKLQRVL 412 Query: 181 DECRLMQMRRQEVVA--------------------PEDAWRDITNAWQLRTRQLACLQLL 220 + R + RR E P + + I + + + + + ++ L Sbjct: 413 FDSRQVAKRRFEYTPFRPLTNNINSRVSCPVMASNPREPFSSIMVQYNVPSHKKSVVEAL 472 Query: 221 ADWRLRKARERDLAVNFVVREEHLWSVAR-YMPGSLGE-LDSLGLSGSEIRFHGKTLLAL 278 +WR R A+ D +V FV+ + L ++A P + + L + +R + K + L Sbjct: 473 YNWRDRIAKIEDESVRFVMPNQLLVNLANLNQPVDVAKVLGASHFVSEHVRLNAKEVAEL 532 Query: 279 VEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITD-VSETHKISAELLASRRQI 334 +E L D + D R + S I + V+E S +LL + Sbjct: 533 LENTLKLASDNDWDLVDKWNDAQNGRSVAEVDYSNIDEDVAEQTGESFDLLCQSLDV 589 >UniRef50_A5WG76 3'-5' exonuclease n=3 Tax=Psychrobacter RepID=A5WG76_PSYWF Length = 431 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 98/375 (26%), Positives = 171/375 (45%), Gaps = 6/375 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + DAL + + + +ALDTEF++ TY+P L L+Q+ G+ + LID + D Sbjct: 48 HWVADFDALEACLDDLETCDRVALDTEFIKRNTYFPILALVQINTGKAIYLIDAPKL-DL 106 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVF-GELPQPLIDTQILAAFCGRPMSWGFASMV 122 + +L HA EDL +F + + DTQI ++ + G+ + Sbjct: 107 TEFWVVLE-EMPLMIWHACGEDLGIFYLLSESPALTNVFDTQIALSYLTGQLQMGYQQAL 165 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + V ++K+ES++DWLARPL+ Q YA DV YLL + L + G +++ Sbjct: 166 SQELDVHVEKAESQSDWLARPLSHEQENYAIDDVRYLLNLYDILQQQLSKQGLTDKVVED 225 Query: 183 CRLMQMRRQEVVAPE-DAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 C+L E E DA ++ QLA LQ ++ WR AR + FV+++ Sbjct: 226 CQLYAKELYESANIEDDATYLAMADFRYTPEQLAVLQAVSSWREALARATNQPKTFVLKK 285 Query: 242 EHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + + + MP S+ +L + S +R +G L+ ++ +A+ L + P + Sbjct: 286 QAVRDLVVEMPTSIKQLTQKTTMHRSIVRLYGDELIQVINQAKALSPEEQPPRIFPPYRS 345 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 + KA+ +I E + A +L ++ ++ L P LPE + GWR E Sbjct: 346 KD-KSVSKAVDQVIKQYEEQTGVPANVLMRKKWLSSLYEIVAYDLPLEQLPEGLKGWRNE 404 Query: 361 LMAEALHNLLQEYPQ 375 + L L+ + + Sbjct: 405 WVMSTLIPLITSHKE 419 >UniRef50_A6R753 Predicted protein n=4 Tax=cellular organisms RepID=A6R753_AJECN Length = 807 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 136/365 (37%), Gaps = 21/365 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + S+ ++ IA+D E +Y+ + L+QL + ++D L Sbjct: 230 TFVDTLEGIHSMLAELKEVTEIAIDLEHHDAHSYHGLVCLMQLSTRDKDWIVDTLKPWRE 289 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L + DP I K LH + D+ G L DT A P + Sbjct: 290 ELQVLNEVFSDPKILKVLHGSTMDVIWLQRDLGLYIVGLFDTYHAAVALNYPKK-SLKFL 348 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-----GWL 176 +E++ +K DW RPL +YA +D YLL I + + + Sbjct: 349 LEKFVNFQAEKKYQIADWRLRPLLPGMFDYARSDTHYLLYIYDHIRNDLIEHSTPSNNLI 408 Query: 177 PAALDECRLMQMRRQEVVAPED-------AWRD--ITNAWQLRTRQLACLQLLADWRLRK 227 L+ + ++R E WRD + N+ Q A + + WR + Sbjct: 409 DYVLERSKQEALQRYERPVYNAETGEGRIGWRDMLVRNSTLFSREQFAVFRAVHQWRDKI 468 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 AR D V +V+ ++ L+ +A MP L ++ +R L+ +++KA+ + Sbjct: 469 ARFEDEGVQYVLSKQSLFKIAHAMPLDPVSLLRTVSPVSPLVRARASELVQVIKKAKIIG 528 Query: 287 EDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKP 346 P+ L + ++ SE +L +R I+Q K Sbjct: 529 ATG-PELRDVLFPLKQRTDESNPSTPKLSPKSEPD--HRSVLVARADISQFWGATLKQPQ 585 Query: 347 QNNLP 351 Q +P Sbjct: 586 QPPIP 590 >UniRef50_A6DHN3 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN3_9BACT Length = 372 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 9/373 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + I + + + + IALDTEFV T+T++P GL+Q+ + LID L I ++ Sbjct: 2 KFIDQAEEIQRVLSRALSEKDIALDTEFVWTKTFHPIPGLLQIKSAGEIHLIDLL-IENF 60 Query: 64 S--PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 LK +L + K LH+ +DL++F + + DTQ+ AF G P A + Sbjct: 61 PKEILKELLESRDVCKILHSPDQDLKLFKLFCDAEAKNIFDTQLAYAFTGAPKQVSLAKL 120 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 E + + K++ +DW RPL + Q YAA DV YL+ IT L + + +G L+ Sbjct: 121 CLEMMDIEISKTQQVSDWTKRPLKDSQLNYAAEDVRYLIEITETLREKLKENGRYDWFLE 180 Query: 182 ECRLMQM--RRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 E + + E E A++ + +L R L LQ LA +R A +R++ NF+ Sbjct: 181 ENKSISENPALYEEAQAETAYKKVKQFGRLPLRSLVYLQKLAAYRHEIAFKRNITPNFIF 240 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + L+ A Y+ G+ G + +++ H K L A+ ++ + + ++ LP ML Sbjct: 241 HQSLLFKAAMYLSSDYGQFTRNGFNEKQLQKHYKNLQAMAKEVKIIADEDLPNGMLGKEP 300 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 + KA + +V+E + L+ +R I +L+ K N I GWR Sbjct: 301 TGSEKALIKACAQAMDEVAERQGLDPGLIYARSHIKRLILKANKKPENLN----IQGWRK 356 Query: 360 ELMAEALHNLLQE 372 E++ + ++ + Sbjct: 357 EVLGDTFEKIMNQ 369 >UniRef50_B0DUK1 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0DUK1_LACBS Length = 854 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 124/369 (33%), Gaps = 43/369 (11%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 I+T D L ++ ++ IA+D E R+Y L L+Q+ D E+ ++D L + D Sbjct: 243 IWISTPDELQAMLAKLKKATEIAVDLEHHSYRSYTGFLCLMQISDRENDWIVDLLALRDE 302 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I DP I K LH D+ F L DT + P G A+++ Sbjct: 303 IEQLNEIFTDPKIVKVLHGAESDVVWLQQDFNVYIVNLFDTFHASKLLDFP-RHGLANLL 361 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE----------- 171 E Y DK DW RPL + +YA +D +LL I L Sbjct: 362 EMYCDYIPDKRYQLADWRIRPLPQEMLDYARSDTHFLLFIYDNLRNALLDRSRSRSSSPS 421 Query: 172 ------ASGWLPAALDECRLMQMRRQEVVAPEDA-------WRDITNAWQ---------- 208 L L +R + A W + W Sbjct: 422 SSSQKPQHALLTQVLTRSAETSLRVYVKEPYDAADGSGPGGWDTLAKKWNKGALMAGGPG 481 Query: 209 --LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL--GLS 264 + Q + WR R ARE D + + + ++L+ +A P + L + Sbjct: 482 VGIGAMQREVYVRVHGWRERVAREEDESTRYTMPNQYLFQLAEQPPADMAALLGVFKSSV 541 Query: 265 GSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKIS 324 + +R K LL ++ + + + + + + + + Sbjct: 542 PALVRRRAKELLEVIREGVKRGLEGKQVAKVEEEPSKTGSEVVAP-DAASKEKMDVDSVP 600 Query: 325 AELLASRRQ 333 + AS Q Sbjct: 601 PQ--ASSSQ 607 >UniRef50_B3DN45 LD13130p (Fragment) n=14 Tax=Drosophila RepID=B3DN45_DROME Length = 930 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 113/291 (38%), Gaps = 10/291 (3%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 ++ T + L E +R P IA+D E RT+ L+Q+ + D L + D Sbjct: 303 VVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDM 362 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L +L DP K LH D+E + DT A A +++ Sbjct: 363 HILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNMFDTHRAAKALNM-ARLSLAYLLK 421 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS----GWLPAA 179 Y + +DKS DW RPL ++ +YA D +L+ + ++ + G L + Sbjct: 422 HYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIYVYGRMTNDLLQQHAEPGLLGSV 481 Query: 180 LDECRLMQMRRQEVVAP-EDAWRDI--TNAWQLRTRQLACLQLLADWRLRKARERDLAVN 236 + + +R ++ D+ RQL L+ + +WR AR D + Sbjct: 482 YQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQLYALRGIFEWRDATARSEDESYG 541 Query: 237 FVVREEHLWSVARYMPGSLG-ELDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 +V+ + +A +P + L +R TL +V KA+ P Sbjct: 542 YVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQLHTLHQIVLKARDQP 592 >UniRef50_UPI000186D892 conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186D892 Length = 737 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 61/294 (20%), Positives = 107/294 (36%), Gaps = 11/294 (3%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + +IT + + + E + IA+D E R++ L+Q+ + +ID + + Sbjct: 250 FHLITKPEEIDPMIENLEKCKEIAIDLEHHSYRSFQGFTCLLQISTRDTDYVIDTIALRS 309 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L I +P+I K H D+ + DT S A + Sbjct: 310 KLEGLNKIFTNPNIVKVFHGADLDILWLQRDLSLYVVNMFDTHQAGKLLNYS-SLSLAYL 368 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGWL 176 + + + K DW RPL + YA D YLL I L E L Sbjct: 369 MFHFCKIVAQKHFQMADWRIRPLPDELLAYAREDTHYLLYIYDNLRNILIEKSNEQKNLL 428 Query: 177 PAALDECRLMQMRRQEVVA-PEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKARERDL 233 ++E + ++ + E + I + RQ LQ L WR ARE D Sbjct: 429 RTVINESTRICLKTYKKPNFDESGYMSIYTRSKKIFDNRQKYALQRLYAWRDSTARELDE 488 Query: 234 AVNFVVREEHLWSVARYMPGSLG-ELDSLGLSGSEIRFHGKTLLALVEKAQTLP 286 ++ +V+ + +++ +P L +R + L ++ KA+ P Sbjct: 489 SLAYVLPNHMMLNISEVLPREAQGILACCNPIPLPVRQNLLKLHLIILKAREQP 542 >UniRef50_A1U125 3'-5' exonuclease n=3 Tax=Marinobacter RepID=A1U125_MARAV Length = 383 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 109/373 (29%), Positives = 172/373 (46%), Gaps = 11/373 (2%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + + T + L + +ALDTEF R T+YP GL+QL L+DP Sbjct: 18 RWLETPELLDQWLGGLDPGIPVALDTEFERVSTFYPIPGLVQLGADGQFWLVDPEVAEAA 77 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 +A+L D S K L+A SEDLE+F + P ++D QI AA G S G+A +VE Sbjct: 78 GSFRAMLADESRPKLLYAMSEDLELFRHWLNVEPAGVLDLQIGAALAGAGFSVGYARLVE 137 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 G LDKS +R+DW++RPLT Q YA D+ +L P+ ++ A DE Sbjct: 138 TLFGEALDKSATRSDWVSRPLTPAQERYALDDIRFLEPLYGWVLANLRQRNLEHALADES 197 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 R PE + + W L Q A L+ L WR ++ R +D N V+ + Sbjct: 198 RRFANEAATQEDPEQHYLKLRGGWTLNREQQAVLRALVAWREQECRRQDRPRNRVLNDGL 257 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 L ++A +P S + + G+ G ++ +G+ L+ LV+ A+ L L Sbjct: 258 LIAIAERLPSSAAVIRDVQGVPGGFVKRYGEQLVELVQAARATDNSGLELIPRPLSRDQQ 317 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 +K +K ++ +E I E+LA R++I +L+ GWR +++ Sbjct: 318 --ALYKKVKRYFSNAAECFDIPIEILAPRKRIEKLIQDGTLAGQT-----FFEGWREDII 370 Query: 363 A---EALHNLLQE 372 A + + LL + Sbjct: 371 APVKQDIEELLNQ 383 >UniRef50_A9LLI7 RRP6-like protein 2 n=6 Tax=rosids RepID=A9LLI7_ARATH Length = 870 Score = 263 bits (672), Expect = 9e-69, Method: Composition-based stats. Identities = 69/345 (20%), Positives = 127/345 (36%), Gaps = 20/345 (5%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 ++ + L L +R+ A+D E + R++ L+Q+ ++D + Sbjct: 260 FKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLMQISTRTEDYIVDTFKLRI 319 Query: 63 W--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 L+ I +DP K +H D+ FG L DT + Sbjct: 320 HIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLNLE-RNSLEF 378 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW----- 175 +++ + GVT +K DW RPL E YA D YLL I + +E + Sbjct: 379 LLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQRMAKDDAHT 438 Query: 176 ---LPAALDECRLMQMRRQEVV-APEDAWRDITNAW--QLRTRQLACLQLLADWRLRKAR 229 L + + E E+++ + QLA + L +WR AR Sbjct: 439 DSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFNAAQLAIVAGLCEWRDFIAR 498 Query: 230 ERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALVEKAQTLPED 288 D + +V+ + L +A+ MP S+G+L + S I + ++++++ ++ Sbjct: 499 AEDESTGYVLPNKVLLEIAKEMPDSVGKLRRMLKSKHPYIERNVDSVVSVIRQSMQHYAA 558 Query: 289 ALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQ 333 + PG + I +SE + +AS Sbjct: 559 FESAALSLKDVSPG-----NVMDKNIEPISEKKDLHTGDVASPSL 598 >UniRef50_A8NTL1 3'-5' exonuclease family protein n=1 Tax=Brugia malayi RepID=A8NTL1_BRUMA Length = 847 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 107/299 (35%), Gaps = 10/299 (3%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI- 60 + T + L SL + + ++D E R++ L+Q+ + +IDP + Sbjct: 265 ELVYVDTLEKLRSLRDVLNKEQEFSVDLEHNAQRSFLGLTCLMQISTRQMDYIIDPFPLW 324 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L DP+I K H D+ FG + DT + + Sbjct: 325 NDMHILNEPFTDPNILKVFHGADSDIVWLQRDFGIYVVNMFDTYKAMRVLNFSK-FSYQH 383 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-----GW 175 +V+ TLDK + DW RPLT YA +D YLL +L + Sbjct: 384 LVQTCCNHTLDKKFQKADWRLRPLTIAHKTYARSDTHYLLHCYDQLRKRLLSQENAANNL 443 Query: 176 LPAALDECRLMQMRRQEVVAPE-DAWRDIT-NAWQLRTRQLACLQLLADWRLRKARERDL 233 L +E + + E D + + L +RQ L L WR +AR D Sbjct: 444 LEFVYNESAQTCLTVYKKPKFESDGYEKLLVGRKPLNSRQQFALAALWKWRDERARTDDE 503 Query: 234 AVNFVVREEHLWSVARYMPGSLG-ELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP 291 + +V+ + +A +P + L ++ L ++ ++ P P Sbjct: 504 SPQYVLPCHMMLQIAEVLPREMQGILACCSPVPVHVKQELHILHQIINTSRDQPLVKRP 562 >UniRef50_C5FLQ1 Ribosomal RNA processing 3'-5' exonuclease n=1 Tax=Microsporum canis CBS 113480 RepID=C5FLQ1_NANOT Length = 810 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 72/341 (21%), Positives = 125/341 (36%), Gaps = 22/341 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + ++ ++ IA+D E Y+ + L+Q+ E ++D L Sbjct: 247 TFVETMEDVHAMLAELKKAKEIAVDLEHHDAHVYHGLVCLMQISTREQDWIVDTLKPWRD 306 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DPSI K LH S D+ G L DT A+ P + Sbjct: 307 QLQVLNEVFADPSIVKVLHGSSMDVIWLQRDLGLYLVGLFDTFHAASMLQLPKK-SLKFL 365 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS---GWLPA 178 +++Y G DK DW RPL +YA +D +LL I +L E + + Sbjct: 366 LQQYVGFDADKQYQTADWRIRPLLPGMLDYARSDTHFLLYIFDRLRNELIEASGRDAIEY 425 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQ---------LRTRQLACLQLLADWRLRKAR 229 L+ + ++R E + W L Q A + L +WR + AR Sbjct: 426 VLERSKECALQRYERPTYDSLRGRGNGGWHDMLSNSPVLLTREQFAVFRALHEWRDKTAR 485 Query: 230 ERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED 288 D + V+ + L+ +A+ MP + L + +R + + AL+ KA+ Sbjct: 486 TDDESTQTVLSKRSLFRIAQEMPVDKFAVLQLASPVSASLRSRTEEVAALIAKAKKNS-S 544 Query: 289 ALPQPMLNLMDMPGYR-----KAFKAIKSLITDVSETHKIS 324 P+ + P A K + ++ Sbjct: 545 TGPEMHEMIRRSPTVATTTGQARVVAAKGAMDREAQDINTD 585 >UniRef50_UPI000180BF09 PREDICTED: similar to exosome component 10 n=1 Tax=Ciona intestinalis RepID=UPI000180BF09 Length = 669 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 126/292 (43%), Gaps = 17/292 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + + L L ++ IA+D E R+Y L+QL + ++D L + + Sbjct: 118 IFVDGVNGLNMLIRELKQESEIAVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTLALRAN 177 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L + +P I K H +D++ FG L DT A +S + ++ Sbjct: 178 LNILNQVFTNPKIVKVFHGADQDIKWLQRDFGVYVVNLFDTGQAARVLELGLSREY--LL 235 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS----GWLPA 178 + Y V DK + DW RPL++ +YA D YLL I + ++ G + Sbjct: 236 KHYCKVESDKKYQKADWRERPLSKDMLKYAQEDTHYLLYIYDMMKLDLLEKAGGVGLMHK 295 Query: 179 ALDECRLMQMRRQEVVAPED-AWRDI--TNAWQL---RTRQLACLQLLADWRLRKARERD 232 + R + + + E + +D + + A ++ ++L L+L+ WR AR++D Sbjct: 296 VIGNSRDICLLKYEKLIIDDTSHLKLLRKGAGKIEDWEPQELEALRLIYMWRDELARQKD 355 Query: 233 LAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQT 284 + +++ + L +A+ +P ++ ++ + + T+ L+ +A+ Sbjct: 356 ESCGYIMPNKMLVQIAKTLPQTVQDVR----LQGVWQQYVPTIHQLIVEARN 403 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 83/193 (43%), Gaps = 16/193 (8%) Query: 100 LIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYL 159 L DT A +++ Y V DK + DW RPL++ +YA D YL Sbjct: 430 LFDTGQAARELKLG--CSLEYLLKHYCKVESDKKFQKADWRERPLSKDMLKYAQKDTHYL 487 Query: 160 LPITAKLMVETEAS----GWLPAALDECRLMQMRRQEVVAPED-AWRDI--TNAWQL--- 209 L I + ++ + + R + + + E + +D + R + A ++ Sbjct: 488 LYIYDMMKLDLLEKAGDAKLMRKVIGNSRDICLLKYEKLIIDDTSHRKLLRKGAGKIEDW 547 Query: 210 RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIR 269 ++L L+L+ WR + AR+ D + +V+ + L +A+ MP + +L + Sbjct: 548 EPQELEALRLIYMWRDKLARQMDESCGYVLPNKLLVQIAKTMPQTEQDLR----LQGVRQ 603 Query: 270 FHGKTLLALVEKA 282 + +T+ L+ +A Sbjct: 604 QYVQTIHQLIVEA 616 >UniRef50_Q6FA19 Ribonuclease D, processes tRNA n=19 Tax=Acinetobacter RepID=Q6FA19_ACIAD Length = 398 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 175/373 (46%), Gaps = 10/373 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +Q I D LA + + LDTEF++ T +P+LG+ Q+ + L+D + D Sbjct: 20 FQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTAL-D 78 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGEL-PQPLIDTQILAAFCGRPMSWGFASM 121 S L HA ED+++ + + + + DTQ+ +F G + + + Sbjct: 79 LSIFWQKLYASKQ-NVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQAA 137 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++ + ++K ++R+DWLARPL++ Q +YAA DV YLL ++ ++ + + L+ Sbjct: 138 LKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLE 197 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 +CR + + D+ ++ RQL LQ L WR + + + +F++R Sbjct: 198 DCRHLTQEIGTDTPQHLLYTDV-GNYRHSRRQLMQLQQLMVWREQLIKAINQPRSFILRN 256 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED-ALPQPMLNLMD 299 + + P + +L + + + IR HGKT+L L++ LPE+ P M + Sbjct: 257 STMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLK---FLPEEHEWPLRMAKPIR 313 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 + LI V E +I E+L ++ +N L + ++ LPE + GWR Sbjct: 314 HSSQ-DVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRY 372 Query: 360 ELMAEALHNLLQE 372 E++ L +L++ Sbjct: 373 EMLTRPLIQILKQ 385 >UniRef50_B6DTH8 Exosome subunit Rrp6P n=1 Tax=Bodo saltans RepID=B6DTH8_9EUGL Length = 741 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 117/336 (34%), Gaps = 20/336 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + T + L +L A+ A +A+D E R++ L+QL ++D L + Sbjct: 220 TFVETVEGLDALIAALSACREVAVDLEHHDFRSFQGITCLMQLSTRSEDYIVDVLRLRSH 279 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + D +I K H ED+ FG + DT I P A V Sbjct: 280 MHRLNRVFLDTNILKVFHGAKEDVRWLQKDFGLYVANMFDTGIALQTLHMP--HSLAFAV 337 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------GW 175 + + GV LDK DW RP+ YA D YLL + +L + Sbjct: 338 DHFCGVRLDKKYQTADWRIRPVPSEMIHYARQDTHYLLYVHDRLKALLLHAEGRASVGNL 397 Query: 176 LPAALDECRLMQMRRQEVV--APEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARER 231 L + R + + R E + +R+ L QL L+++ +WR + AR+ Sbjct: 398 LVHVYQDSRRLCLTRYEKPMLDVDTTYREAMGKSLGGLSATQLEVLRVVFNWRDQAARDA 457 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDAL 290 D + ++ + +A +P S E L +R L LV+K T Sbjct: 458 DESPPAIMHASAILQIASKLPTSAKEILACCAPVSLVVRRDIGHLCDLVKKTLTENGIDC 517 Query: 291 PQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAE 326 + + S + E Sbjct: 518 EANAATRLASARAAGRVDP-----SSASSPLGVPQE 548 >UniRef50_Q7S5A8 Related to nucleolar 100K polymyositis-scleroderma protein n=3 Tax=Sordariales RepID=Q7S5A8_NEUCR Length = 822 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 129/352 (36%), Gaps = 28/352 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E ++ IALD E R+Y L L+Q+ E +ID L Sbjct: 229 IWVDTYEGVLEMLEELKQAKEIALDLEHHDFRSYTGLLSLMQISTREKDWVIDTLQPWRH 288 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +P+I K LH D+ G L DT A G P + Sbjct: 289 KLEVLNEVFANPNIVKVLHGAFMDVIWLQRDLGLYVVGLFDTYHACAVLGYPGR-SLGYL 347 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------- 173 + +++ DK DW RPL E YA +D YLL I ++ E Sbjct: 348 LSKFAEFEADKKYQLADWRIRPLPEEMFYYARSDTHYLLYIFDMIINELVERSTPGKPKP 407 Query: 174 GWLPAALDECRLMQMRRQEVVAP-------EDAWRD--ITNAWQLRTRQLACLQLLADWR 224 L L+ + + ++R E ++ W + + + Q A + + WR Sbjct: 408 DLLEQVLERSKDVALQRYENLSYNVETGQGPRGWYNVLLKSPTLYNGEQFAVYKAVHQWR 467 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQ 283 AR D + F + ++ L +AR +P L S+ + ++ H L +++KA+ Sbjct: 468 DNLARREDESPFFFMTQQVLADIARILPTDKKALWSILDSNAKGLKSHLDDLFDVIQKAR 527 Query: 284 TLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKIS--AELLASRRQ 333 + + K +++ I EL A R Q Sbjct: 528 EEGVNG----PKMMDIFKSESSILAPAKIA-AVIADDSDIPDVKELKADRSQ 574 >UniRef50_Q75CB2 ACL001Cp n=2 Tax=Saccharomycetaceae RepID=Q75CB2_ASHGO Length = 745 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 18/299 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + ++L+ + + ++ +A+D E R+YY + L+Q+ L+D + + D Sbjct: 214 IWVDNVESLSQMLDELKEVKELAVDLEHHDYRSYYGIVCLMQISSRSKDWLVDTIALRDD 273 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L IL DP++ K H D+ G L DT + G P A ++ Sbjct: 274 LHVLNVILPDPTVVKVFHGAFMDMIWLQRDLGLYVVSLFDTYHASRALGFPK-HSLAYLL 332 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E ++ K DW RPL + +YA +D +LL I L +G L L+ Sbjct: 333 ETFAKFKTSKKYQLADWRVRPLPKPLRDYARSDTHFLLSIYDDLRNALVKAGKLAEVLNA 392 Query: 183 CRLMQMRRQE---------------VVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 R + RR E + + WR + + L + L+ L +WR Sbjct: 393 SRNVAKRRFEYTSFRPRIPDSNVYSPIESTEPWRKLMYQYNLPPSKEPLLKKLYEWRDTV 452 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTL 285 AR D +V +V+ + L S+ P + S+ +R + +TL L+++ Sbjct: 453 ARRDDESVRYVMPNQLLVSLVSLSPSETAGVLSVSTYVTDYVRSNARTLANLIKRTLET 511 >UniRef50_C9SGG4 3'-5' exonuclease domain-containing protein n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SGG4_VERA1 Length = 894 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 70/337 (20%), Positives = 126/337 (37%), Gaps = 22/337 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + + T + + + ++ IA+D E TRTY L L+Q+ + ++D L Sbjct: 269 KWVDTYEGVLEMLGELKKAKEIAVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRH 328 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +P I K H D++ G L DT A G P A + Sbjct: 329 QLEVLNEVFTNPKIVKVFHGAHMDMQWLQRDLGLYINGLFDTFFAAEILGYPQR-SLAYL 387 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE--------AS 173 ++ + DK DW RPL E YA +D YLL I ++ E + Sbjct: 388 LKRFVDFDADKKYQMADWRIRPLPEEMFYYARSDTHYLLYIFDRIRNELLDASDRSKPET 447 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDAWRD---------ITNAWQLRTRQLACLQLLADWR 224 + L + + + + R E + + + N L +Q A + + WR Sbjct: 448 DIIQQVLQKSKELSLSRYEGLDFDPETGHGSRGWYGVLLKNPMPLSGKQFAAYRAIWKWR 507 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQ 283 AR D + +V+ + +AR+MP L SL S S I + + + A +K + Sbjct: 508 DDTARRLDESTGYVLPNAAIAEIARHMPPDAKALHSLIHSNSIIAKRNVGEIWAAFKKGR 567 Query: 284 TLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSET 320 +D+ + + + +++ + Sbjct: 568 DEGDDS-QSLLRFFQNDTSSSTTTRRATQKLSERAAD 603 >UniRef50_A5DWN7 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DWN7_LODEL Length = 826 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 122/309 (39%), Gaps = 25/309 (8%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + ++ L ++ E ++A IA+D E R+YY + L+Q+ + E +ID L + D Sbjct: 232 IWVDNEEQLDAMIEELKAASEIAVDLEHHDYRSYYGLVCLMQISNREKDWVIDTLALRDE 291 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L I + I K H D+ G L DT + G + ++ Sbjct: 292 LSKLNVIFTNHEIVKVFHGAFMDIIWLQRDLGLYIVSLFDTYHASRQLGFAK-FSLQYLL 350 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + ++ K DW RPL YA +D +LL I +L + L L E Sbjct: 351 DTFAHFRTSKKYQLADWRIRPLPAPMLAYARSDTHFLLYIYDQLRNKLIDQDKLSKVLFE 410 Query: 183 CRLMQMRRQEVV---------------------APEDAWRDITNAWQLRTRQLACLQLLA 221 R + RR E P++ W I + + + + +++L Sbjct: 411 LRQVAKRRFEYTKYRPLSNTPGNGQVSCPIMASNPKEPWGSIMYQYNVPSFKKHIVEVLY 470 Query: 222 DWRLRKARERDLAVNFVVREEHLWSVAR-YMPGSLGELDSLGL-SGSEIRFHGKTLLALV 279 +R ARE D +V +++ + L S++ P ++ + + +R H K + +L+ Sbjct: 471 KYRDAVAREEDESVRYIMPNQLLVSLSMLEAPVETEKVLNCHVYVSEHVRMHAKEIASLI 530 Query: 280 EKAQTLPED 288 A E Sbjct: 531 NLALKDSEK 539 >UniRef50_B2VXT5 Exosome complex exonuclease Rrp n=2 Tax=Pleosporineae RepID=B2VXT5_PYRTR Length = 786 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 23/337 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 ++ T +ALA++ ++ IA+D E RTY + L+Q+ + ++D L Sbjct: 206 TLVDTPEALAAMLAELKTAKEIAIDLEHHDNRTYIGMVCLMQISTRDKDWIVDTLKPWRR 265 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DPSI K LH D+ G L DT A G + A + Sbjct: 266 KLECLNEVFADPSILKVLHGAFMDIVWLQRDLGLYIVGLFDTFHAARALGY-QAASLAYL 324 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE--------AS 173 +E + K DW RPL++ EYA AD +LL I + E Sbjct: 325 LELHVNFKAQKQYQLADWRQRPLSKELFEYARADTHFLLYIFDNMRNELVNKSDFSNPEK 384 Query: 174 GWLPAALDECRLMQMRRQEVVAPED-------AWRDI--TNAWQLRTRQLACLQLLADWR 224 + L + ++R E + W + Q +Q + + + +WR Sbjct: 385 NKVQDVLQNSKETSLKRYEHPIYDSETGLGTAGWYKLISRTPVQFTRQQFSVFRAVHEWR 444 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGS-LGELDSLGLSGSEIRFHGKTLLALVEKAQ 283 R+ D + F++ ++SVAR MP + +G +++ G R H L+ +V +A+ Sbjct: 445 DTLGRKEDESPLFIMPNHAVFSVARDMPSNKVGLFNAIQHVGHITRAHADELVGVVAEAK 504 Query: 284 TLPED--ALPQPMLNLMDMPGYRKAFKAIKSLITDVS 318 L + + + DM ++A + I +V+ Sbjct: 505 ERGASGPELHEVLQAVADMQRAQRAESEAATKIAEVA 541 >UniRef50_Q10146 Exosome complex exonuclease rrp6 n=1 Tax=Schizosaccharomyces pombe RepID=RRP6_SCHPO Length = 777 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 126/305 (41%), Gaps = 20/305 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++T+ L+ + + ++ IA+D E R++ + L+Q+ + E ++D L + + Sbjct: 219 IWVSTESQLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREE 278 Query: 64 SPLKA-ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + +P+I K H + D+ FG L DT G G A ++ Sbjct: 279 LEALNVVFTNPNIIKVFHGATMDIIWLQRDFGLYVVNLFDTYYATKVLGFE-GHGLAFLL 337 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET------EASGWL 176 ++Y DK DW RPL +YA +D YLL I L E + Sbjct: 338 QKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENLM 397 Query: 177 PAALDECRLMQMRRQEVVAPE-------DAWRDITNAWQLR----TRQLACLQLLADWRL 225 + + + + +R+ E+ + D WR++ + L + L DWR Sbjct: 398 QSVFNSSKQISLRKYELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRD 457 Query: 226 RKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALVEKAQT 284 AR+ D +V +V+ L ++A P ++ S+ R + + ++ +V++A+ Sbjct: 458 SVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQLTPIARMYVEDIVKVVQEAEK 517 Query: 285 LPEDA 289 L + Sbjct: 518 LYNEQ 522 >UniRef50_C4XX47 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4XX47_CLAL4 Length = 738 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 20/297 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + + T DAL + EA+R+ IA+D E R+YY L+Q+ + E ++D L + D Sbjct: 220 KWVDTVDALQEMIEALRSSTEIAIDLEHHDYRSYYGITCLMQISNREQDWIVDTLALHDD 279 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I +P+I K LH + D+ G L DT + G P + A ++ Sbjct: 280 LRDLNEIFANPAILKVLHGANMDIIWLQRDLGLYIVSLFDTYHASKKLGFPK-FSLAYLL 338 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA--SGWLPAAL 180 E ++ K DW RPLT+ +YA AD +LL I +L + G + L Sbjct: 339 ENFAHFKTSKKYQLADWRIRPLTDAMMQYARADTHFLLNIYDQLRNKLLNAGQGKVQEVL 398 Query: 181 DECRLMQMRRQE----VVAPEDAWRD----------ITNAWQLRTRQLACLQLLADWRLR 226 E R + RR E D W + N + + ++ +Q L +WR + Sbjct: 399 YESRKVASRRFEFNSFKQDQTDNWMHSYGGMGQERWVMNQYNIEPERIEIVQALINWRDK 458 Query: 227 KARERDLAVNFVVREEHLWSVARY-MPGSLGEL-DSLGLSGSEIRFHGKTLLALVEK 281 ARE+D + +++ + L +++ P ++ ++ G S +R + K L L+EK Sbjct: 459 VAREKDESTRYIMSNQVLANLSSLVAPVDASKVHNAAGSQYSIVRQNSKELAELIEK 515 >UniRef50_C5DEP9 KLTH0C11066p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DEP9_LACTC Length = 735 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 82/352 (23%), Positives = 130/352 (36%), Gaps = 32/352 (9%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 + + DAL + + IA+D E RTYY L+Q+ E LID + + D Sbjct: 216 EWVDNTDALKLMLNELLLANEIAIDLEHHDYRTYYGITCLMQISTREKDWLIDTIALRDD 275 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + DP ITK LH D+ G L DT + G P A ++ Sbjct: 276 LWILNEVFTDPKITKVLHGAFMDIIWLQRDLGLYIVSLFDTYHASRLLGSPK-HSLAYLL 334 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E Y+ K +DW RPL + YA AD +LL I + L L + Sbjct: 335 ERYAHFKTSKKYQLSDWRVRPLPKALKAYARADTHFLLNIYDNMRNSLIEQNKLSQVLHD 394 Query: 183 CRLMQMRRQE---------------VVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRK 227 R + RR E + ED WR + + + + ++ L +WR Sbjct: 395 SRNVAKRRFEFTTFRPKIVTSHVFSPIEREDPWRTLMFQYNIPQSKSLLVRRLYEWRDMV 454 Query: 228 ARERDLAVNFVVREEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLP 286 AR D + +V+ + L S+A P + + + IR + K+L L++K+ Sbjct: 455 ARRDDESPRYVIPNQLLVSLAVNAPTTPALIMATSTFVTEHIRQNAKSLALLIKKSLESS 514 Query: 287 EDAL--------------PQPMLNLMDMPGYRKAFKAIKSLITDVSETHKIS 324 + P M + R K ++ + + IS Sbjct: 515 SNEFGQLLNSANTVQNSSPTKMSSEDIEKNSRMFEKFLEDFSYEKAADCGIS 566 >UniRef50_A4RDR3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4RDR3_MAGGR Length = 854 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 113/301 (37%), Gaps = 21/301 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E ++ IA+D E RTY+ L L+Q+ E ++D L Sbjct: 258 TYVDTYEGVLEMLEDLKQAKEIAVDLEHHDFRTYHGLLSLMQISTREKDWIVDTLKPWRQ 317 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DPSI K H D+ G L DT A P S A + Sbjct: 318 QLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALMYP-SKSLAYL 376 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------- 173 ++++ DK DW RPL E YA +D YLL + + E Sbjct: 377 LKKFVDFEADKRYQTADWRIRPLPEEMLYYARSDTHYLLYVYDMMRNELLRQSVSGDPHR 436 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQ---------LRTRQLACLQLLADWR 224 L L + ++R E + + W Q + + L WR Sbjct: 437 DLLERTLQRSKDTALQRYEAYTIDGETGRGSRGWFNLIHRLPNTFSREQFSVYRALHKWR 496 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALVEKAQ 283 AR D + F++ + L +AR MP + +L L + G +R L+ L++ ++ Sbjct: 497 DDVARREDESPMFLMSNQLLVDIARAMPETANDLRRLFTNVGPPVRNAVDELVDLIQDSR 556 Query: 284 T 284 Sbjct: 557 Q 557 >UniRef50_B9I623 Predicted protein n=2 Tax=Malpighiales RepID=B9I623_POPTR Length = 858 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 67/355 (18%), Positives = 136/355 (38%), Gaps = 21/355 (5%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +++++ L L +R A+D E + R++ L+Q+ ++D L + Sbjct: 232 SFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLR 291 Query: 62 DW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 L+ + +DP+ K +H D+ FG L DT + Sbjct: 292 IHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGIYICNLFDTGQASRVLKLE-RNSLE 350 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW---- 175 ++ + GVT +K DW RPL + YA D YLL I + + Sbjct: 351 HLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLHIYDLMRALLLSKPIDNEN 410 Query: 176 ----LPAALDECRLMQMRRQEVVA-PEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKA 228 L + M+ E E+++ ++ +QLA + L +WR A Sbjct: 411 ADPPLLEVYKRSYDVCMQLYEKELFTENSYLNMYGLPSAGFNAQQLAIVAGLYEWRDAIA 470 Query: 229 RERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALVEKAQTLP- 286 R D + +++ + L +A+ MP ++ +L L S S I H ++++++ + Sbjct: 471 RAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKSKHSYIERHLSSVVSIIRHSMQTSA 530 Query: 287 --EDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLA---SRRQINQ 336 E A+ M++ + S + + +++ + A + Q+ + Sbjct: 531 AFEAAVQHLKERHMEIASQEETEANDGSEARSIPGGNGMNSGVAACHETSAQLEK 585 >UniRef50_C0W1R4 Ribonuclease D n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1R4_9ACTO Length = 402 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 149/389 (38%), Gaps = 24/389 (6%) Query: 5 MITTDDALASLCEAVRAFP-AIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 +I T L + + +A+D E Y + L+Q+ + LID + D Sbjct: 19 VIDTQVGLEKAAQLLSKSTMPVAIDVERAVGYRYSHRAYLVQIRREDVGTFLIDSGTLPD 78 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L L + LH +D+ + G L DT + A G +G A++ Sbjct: 79 LSILNEPLNNA--VWILHDADQDIASL-RMCGLEIPELFDTMLAARLLGF-QRFGLAAVC 134 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ GVTLDK+ DW RPL YAA DV L + K+ + A E Sbjct: 135 EQILGVTLDKNHQSDDWSTRPLPRPWLRYAALDVELLTDLYEKMSHSLFKANRWEWAQQE 194 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + R + E WR++ ++R R LA L+ L R R A E DL +++ Sbjct: 195 FHNILTRPTKKPDSE-PWRNLRGMGKIRSRRHLAILEELWKTRERIAAEIDLEPTRLIKN 253 Query: 242 EHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQ-------- 292 L ++A P + + L+ L R + A + + ++ E LP+ Sbjct: 254 RTLVALAFNPPRTQRQFLNEQELRRPGTRKYLDEWFAAINRGKSRSEADLPEFQRSYRHG 313 Query: 293 ---PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 G ++ I VS+ I E+L R I + + + ++ Sbjct: 314 EFPRATAWRSYEGAHARLVHLRDAIRKVSDKLGIDYEILIDTRIIRHIAWYEVSYQGKDL 373 Query: 350 LPEL----ISGWRGELMAEALHNLLQEYP 374 L L W+ EL+ + L +++ P Sbjct: 374 LEFLTRFGARPWQLELVFKPLEKAIKQMP 402 >UniRef50_C9RLF5 3'-5' exonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLF5_FIBSS Length = 386 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 161/374 (43%), Gaps = 10/374 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y ++ ++++LA+L + + A+DTE Y +L LIQ+ GEH ++DPL D Sbjct: 7 YILVDSEESLANLLADLELYDMAAVDTEADSMYHYTARLCLIQITIGEHHYIVDPLCGLD 66 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +PL T H DL + +G P+ + DT + A G G A +V Sbjct: 67 LAPLFK--ARAMQTLIFHGADYDLRLLWQTYGFSPKSIFDTMLAAKILG-EQHLGLADLV 123 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 +EY G L K R DW RPL+ CEYA D +YL + A L + + +G + ++ Sbjct: 124 KEYFGDELKKENQRADWTIRPLSLDMCEYAIHDTFYLHELCAILAEKLQQAGRMNWLTEQ 183 Query: 183 CRLM-QMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 C + + R +D WR IT + L L+ L +WR ++A E D V++ Sbjct: 184 CNTLIEHARTPNAPKKDPWR-ITGSSIYSPCALNILKHLWEWREKQAEELDRPPYKVMQS 242 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTL---LALVEKAQTLPEDALPQPM--LN 296 E + ++ E+ L F G L L ++ A +PE P + Sbjct: 243 ELMLAIVNAQNSHFPEVSETFLPKLPRNFKGDRLDSFLNMLRTAVAVPECDWPMRLPKAP 302 Query: 297 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356 + + A+K+ + +E KI A LLA++ Q+ L + + Sbjct: 303 PPPVIPHSDLLNALKTWRDEKAEELKIDAALLANKSQLIWLAAPGNIPWEKRYEEAHLMH 362 Query: 357 WRGELMAEALHNLL 370 W+ L E L + L Sbjct: 363 WQQGLWNEILRDKL 376 >UniRef50_B8PGQ0 Predicted protein n=2 Tax=Postia placenta Mad-698-R RepID=B8PGQ0_POSPM Length = 882 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 124/381 (32%), Gaps = 58/381 (15%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + A +++ +R+ IA+D E+ RT+ + L+QL E ++D L + D Sbjct: 247 FTWVADSTAFSAMLNKLRSAQEIAIDLEYHSYRTFGGFVCLMQLSTREEDWVVDTLAVRD 306 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + D I K LH D+ F L DT + P A++ Sbjct: 307 EMEALNEVFTDSQIVKVLHGAESDIVWLQQDFNLYIVNLFDTYHASKVLDFP-RHSLATL 365 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE---------- 171 +E Y T DK DW RPL E YA +D +LL I L Sbjct: 366 LEMYCDFTADKRYQLADWRIRPLPEEMLAYARSDTHFLLYIYDNLRNALLDRAQSRTQSR 425 Query: 172 -----------------------ASGWLPAALDECRLMQMRRQEVVAPE------DAWRD 202 A + L +R E + W Sbjct: 426 AQSPSASAPASKPGSPLPTSGNPAHSLVRLVLSRSEETALRVYEKETYDAEGSGPGGWDT 485 Query: 203 ITNAWQLR--------------TRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 + W Q A + + WR R ARE D + +++ +L+ +A Sbjct: 486 LARKWNKGALIASAQEPTSGPLAMQRAVYRCVHAWRDRIAREEDESTRYILPNHYLFILA 545 Query: 249 RYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAF 307 P + L S +R G+ LL + A P+ + Sbjct: 546 ERPPADMAALLSTFQPVPPVVRRRGRELLDAIRDAVKRTLG--PELSAGPSAAASTAQVA 603 Query: 308 KAIKSLITDVSETHKISAELL 328 +A + T S+ ++ +L Sbjct: 604 QADVAETTAESKAMQVDGHVL 624 >UniRef50_C8PX51 3'-5' exonuclease n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PX51_9GAMM Length = 403 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 101/371 (27%), Positives = 170/371 (45%), Gaps = 6/371 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + T DAL +L + + IALDTEF++ T++P L LIQ+ G+ + LID + Sbjct: 20 IHWVKTQDALFALLDDLEQVDTIALDTEFIKRDTFFPILALIQINTGKAIYLIDAPKLY- 78 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGEL-PQPLIDTQILAAFCGRPMSWGFASM 121 +L D LHA EDL ++ + + + DTQI F S G+ Sbjct: 79 LEEFWEVLADIPTV-VLHACGEDLGIYYLLSNLPALRNVFDTQIGLGFLTGENSLGYQKS 137 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 ++E V +DK ES++DWL RPLT Q YA DV YLLP+ + + G A++ Sbjct: 138 LQETIAVHVDKGESQSDWLQRPLTPEQESYAVDDVRYLLPMFVAIKTQLIEQGLWQYAVE 197 Query: 182 ECR-LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +C+ Q P++A ++ QLA LQ L +WR + A+ + F++R Sbjct: 198 DCQSYTQEIFANFTTPDNALYLSVADYRDNREQLAMLQTLCEWREQLAKSINRPRTFILR 257 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 + L + P S+ +L + + IR +G+ +L L++K + + A P + L Sbjct: 258 PQALREIIEKPPFSMKQLSFTSIKPNVIRMYGQEILTLIDKVRKEDDAAYPALLP-LPYR 316 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 K + I +T I +L ++ +++L + + P +SGWR Sbjct: 317 SLSSDVQKQLDKAIKQHGQTLSIDETVLMRKKWLSELYAYAVAAEKPALSP-WLSGWRKA 375 Query: 361 LMAEALHNLLQ 371 + + +L Sbjct: 376 WIMAEILPILD 386 >UniRef50_A7BCR3 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BCR3_9ACTO Length = 414 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 89/389 (22%), Positives = 143/389 (36%), Gaps = 29/389 (7%) Query: 5 MITTDDALASLCEAVRAFP-AIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 +I T L + A+ IALD E + Y L+Q+ + LID + D Sbjct: 30 VIDTQKDLEAAARALSTGSAPIALDVERAQGFRYGSDPYLVQIRREDVGTFLIDTHALPD 89 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L+ + D LH +DL G P L DT+I A G +G A++V Sbjct: 90 LSVLQPGVED---VWLLHDCLQDLPNL-RQVGLRPSTLFDTEIAARLIGLE-RFGLAAVV 144 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G+ L K +DW RPL + YAA DV L + +L + G A E Sbjct: 145 EQVLGLGLVKDHQASDWSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGRWEWAQQE 204 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 P D WR I A ++R R LA L+ L + R AR DL+ +VR Sbjct: 205 FGYALSVTPPGPKP-DRWRSIPGAGKIRSRRGLAVLKALWETRESIARRIDLSPGRLVRN 263 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDAL---------- 290 L A P + L S+ R + + + + ED L Sbjct: 264 AALVRAASNPPRNKRALMSISEFRSPVARQYEDEWMRALASVAAMTEDELPPKRKPMQPG 323 Query: 291 --PQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHW------ 342 P+P +++ + V+ + ++ E++ + + L Sbjct: 324 SIPEPHHWNRIDEASAARLGTVRNAVASVASSLGLAPEVVLAPQVQRYLAWAPLDPARPS 383 Query: 343 -KLKPQNNLPELISGWRGELMAEALHNLL 370 + + W+ +L + + + L Sbjct: 384 GDEVEERMVNRGARDWQIDLTLDPICDAL 412 >UniRef50_D2NTT8 Ribonuclease D n=2 Tax=Rothia mucilaginosa RepID=D2NTT8_9MICC Length = 449 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 152/387 (39%), Gaps = 21/387 (5%) Query: 4 QMITTDDALASLCEAVRAFP-AIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +ITT+ L E + A +A+DTE + Y + L+QL + L LIDP D Sbjct: 65 TLITTESGLRRAAEQLAAASGPVAVDTERAQGIRYGSRAFLVQLKREDQLYLIDPEAFKD 124 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L D +HA +D ++ G P L DT++ A G + V Sbjct: 125 LRIINDALADAE--WVIHAAIQDFPSL-DMLGMRPNRLFDTELGARLAGLE-RVNLGATV 180 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 EE G L K S+ DW RPL E YA DV L+ + L G L AL+E Sbjct: 181 EELLGYKLAKKHSKEDWSRRPLPESWLNYALLDVDVLIDLRDALEDLLRQQGKLQYALEE 240 Query: 183 CRLMQM-RRQEVVAPEDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNFVVR 240 + ++ + WR LR+ +QL L+ L R AR++D+ ++ Sbjct: 241 FEYLCKTPVKDPTDQPERWRKTKGRTMLRSVKQLTALRNLWHERDSLARKKDVDAKRLLP 300 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQT--------LPEDALP 291 + + AR MP ++ + ++ G +R G + + A LP A P Sbjct: 301 DSAIVEAARTMPRNVPAVMAIPGFQTRGLRREGPRWVRAIAAAARGENAVPFTLPSTAPP 360 Query: 292 QPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 P F ++ I ++SE I A+ L + + +L + L Sbjct: 361 PLKAWESKRPENLALFTEVRQAIDELSEELTIPAQNLITTDYVRRLCWEPPARFDEQTLR 420 Query: 352 ELI-----SGWRGELMAEALHNLLQEY 373 + + W+ L+A + + + Sbjct: 421 DALAEYGARPWQTGLVAPVIAPIFARH 447 >UniRef50_B7PZE0 Exosome component, putative n=1 Tax=Ixodes scapularis RepID=B7PZE0_IXOSC Length = 518 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 109/290 (37%), Gaps = 11/290 (3%) Query: 31 FVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKFLHAGSEDLEVF 89 RT+ L+Q+ ++D L + + L + +P I K LH D+ Sbjct: 40 HHSYRTFQGFTCLMQISTRSSDYVVDTLALRHELHLLNEVFANPKIIKVLHGADMDVLWL 99 Query: 90 LNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQC 149 FG L DT A G A ++ Y + DK DW RPL Sbjct: 100 QRDFGLYLVGLFDTGQAARVLGMAH-LSLAFLLRHYCHLDTDKKFQLADWRIRPLPLEMI 158 Query: 150 EYAAADVWYLLPITAKLMVETEASG-----WLPAALDECRLMQMRRQEVVAP-EDAWRDI 203 +YA D YLL + + + A G L + + + ++R E ED++ ++ Sbjct: 159 KYAREDTHYLLHVYDLMRRDLLAKGNQLNNLLHSVFQRSKQVCLKRYEKPLYTEDSYLEL 218 Query: 204 TNAWQ--LRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLG-ELDS 260 + ++QL L+ L WR R +R D + +V+ + ++ +P + Sbjct: 219 YRKSKKAFNSKQLYALRHLYSWRDRISRLEDESTGYVLPNHMILQISEILPREQQGIIAC 278 Query: 261 LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAI 310 +R + L +++ KA+ P + + + + ++ Sbjct: 279 CNPCPPLVRQNLNELHSIILKARDTPLNQKNEALDVPFEPTQTDIDLDSV 328 >UniRef50_Q7XE52 Nucleolar protein, putative, expressed n=13 Tax=Magnoliophyta RepID=Q7XE52_ORYSJ Length = 902 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 114/297 (38%), Gaps = 12/297 (4%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + +L L +++ A+D E R++ L+Q+ ++D L + Sbjct: 261 FTHVEDLKSLEVLATKLKSATEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIVDTLKLRK 320 Query: 63 W--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + L+ I +DP+ K +H D+ FG L DT + Sbjct: 321 YLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRILQM-DRNSLEH 379 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-----EASGW 175 ++ + GVT +K DW RPL + +YA D YLL I + + + + Sbjct: 380 LLHHFCGVTANKEYQSADWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKESSDENDL 439 Query: 176 LPAALDECRLMQMRRQEVV-APEDAWRDITN--AWQLRTRQLACLQLLADWRLRKARERD 232 L + + ++ E ++ I + RQL+ L + WR AR D Sbjct: 440 LLEVYKRSKEICLQLYEKELLTHSSYLYIHGLKENEFDARQLSVLANIYKWRDSVARGED 499 Query: 233 LAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED 288 + +++ + L +A+ MP + G L + S + H +++ + A + Sbjct: 500 ESTGYILPNKTLLEIAKQMPATTGRLKRIVKSKNSYLERHLGHVISTIRSAIANCDA 556 >UniRef50_B4D6R3 3'-5' exonuclease n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6R3_9BACT Length = 352 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 88/363 (24%), Positives = 141/363 (38%), Gaps = 19/363 (5%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 +I T +AL ++ + P I +DTE Y+ +L LIQ+ H LIDPL Sbjct: 4 LIDTAEALQAVPPLLAPHPRIPIDTEADSLHCYFEKLCLIQISVPGHDLLIDPLAGISLQ 63 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL + +H DL + V + P+ DT I A CG + A++++ Sbjct: 64 PLFEAFAGKEL--IIHGADYDLRLLRRVGFTVTAPVFDTMIAARLCGIEE-FSLAALIKR 120 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC- 183 Y V L K+ + +W RPL+ + +YA D YLL I L E + C Sbjct: 121 YFDVALTKASQKANWARRPLSPQMADYAVKDTHYLLEIAGILEAELTRLDRMEWFRQSCD 180 Query: 184 -RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + + PE+ W IT + LR R A L+ L WR +A+ D ++ E Sbjct: 181 KAVAASAITKERDPEEVW-RITGSKDLRGRASAILRALWHWREAEAQAVDRPTFHILHSE 239 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP- 301 L A + S RF+ VE A+ LPE P+ + P Sbjct: 240 QLIEAAAKLDRDQEVDFSQLHGPRRRRFY-----EAVETAKALPESEWPKIIRKPRPRPT 294 Query: 302 -GYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 F+ +K+ + K+ L+A + + L + + + W+ Sbjct: 295 RDEEARFRELKTKRDAAAAELKLDPSLIAPKSMLESLAANGAEATAR------MLPWQRA 348 Query: 361 LMA 363 + Sbjct: 349 TLG 351 >UniRef50_D0LT15 Ribonuclease D n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LT15_HALO1 Length = 400 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 10/355 (2%) Query: 27 LDTEFVRTRTYYPQLGLIQLFDGE----HLALIDPLGITDWSPLKAILRDPSITKFLHAG 82 D EF + +L L+Q+ G+ +ALID + + D +P+ ++ DP++ HA Sbjct: 32 FDFEFASDGRFLAELALVQVSWGDPEAPEIALIDSVAV-DPTPVLRLIGDPAVVSVAHAA 90 Query: 83 SEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLAR 142 +DL + F + DTQI AAF G G+ +V+ GV LDK+ T WL R Sbjct: 91 KQDLGILAARFDIFAENFWDTQIAAAFVGMAEQIGYGKLVDALLGVQLDKASQFTKWLER 150 Query: 143 PLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRD 202 PL+ Q YAA DV YL + A L + G +E L+ E A+ Sbjct: 151 PLSPAQLRYAADDVRYLPRVWAHLSQRLDELGRRAWVGEESALLARDAMPYGPAELAYHS 210 Query: 203 ITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL- 261 + A LR + L L LA WR +A +L +++V+ ++ L ++R G++ + Sbjct: 211 LKGAGALRGKALGRLAALAAWRQERALADNLPLSWVLPDKALLELSRRGARGPGDVRNAP 270 Query: 262 GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETH 321 G++G+ R + +++ ++ A P A P +L D G R + +++ + Sbjct: 271 GVTGTIARRYADAIVSALQGAGKPPAGAPPSRGPSLDD--GARLRVPVVMAMLQTRAAEA 328 Query: 322 KISAELLASRRQINQLLNWHWKLKPQNNLP--ELISGWRGELMAEALHNLLQEYP 374 I+A A+R L+ WH + L+ GWR +L +A L+ Sbjct: 329 GIAARFAATRADAESLVAWHAAGGDEGERDGVPLLEGWRRDLFGDAALAWLRGER 383 >UniRef50_A5DAB2 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DAB2_PICGU Length = 755 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 120/311 (38%), Gaps = 25/311 (8%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + T+ L+ + + + IA+D E R+Y + L+Q+ E +ID L + D Sbjct: 226 IWVETESDLSQMVSDLSSQTEIAVDLEHHDYRSYLGIVCLMQISSREKDWIIDTLKLRDS 285 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I +P+I K H D+ G L DT + G P + A ++ Sbjct: 286 LVVLNEIFANPNIVKVFHGAFMDIIWLQRDLGLYVVSLFDTYHASKKLGLP-RFSLAYLL 344 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--WLPAAL 180 E Y+ K DW RPL+ YA +D +LL + +L + +SG + L Sbjct: 345 ENYANFKTSKKYQLADWRMRPLSGPMLSYARSDTHFLLYVYDQLRNQLLSSGSQKMKEVL 404 Query: 181 DECRLMQMRRQEV-------------------VAPEDAWRDITNAWQLRTRQLACLQLLA 221 E R + RR E ++ + I N + L ++ L Sbjct: 405 HESRQVAKRRFEFTRFRPTSVSGSKVSCPIMAPNAKEPYSSIMNQFNLPNHTRPIVEALY 464 Query: 222 DWRLRKARERDLAVNFVVREEHLWSVA-RYMPGSLGELDSLGLSGSEIRFHGKTLLALVE 280 WR KA+E D +V +V+ + L + + +P + ++R L+ L+ Sbjct: 465 LWRDAKAKECDESVRYVMPNQLLVNFSLLALPVDKETILRNPYITDQVRNSVDELVTLLN 524 Query: 281 KA-QTLPEDAL 290 Q + + Sbjct: 525 SVMQQVSDSDW 535 >UniRef50_B9XPC9 3'-5' exonuclease n=1 Tax=bacterium Ellin514 RepID=B9XPC9_9BACT Length = 372 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 153/367 (41%), Gaps = 16/367 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 ++I +D L +L + + P +ALDTE Y ++ L+Q+ LIDPL + Sbjct: 16 KVIDSDVTLKNLLGRLSSTPWVALDTEADSLHAYPEKVCLLQITTPLGDELIDPLSGINL 75 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL + +H DL + +P+ + DT + + G +G +V Sbjct: 76 DPLLDTFGGHEL--IMHGSDYDLRLLRKHHAFVPKAIFDTMLASRLLGHT-QFGLVHLVA 132 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Y GVTL+K + DW RPLT R YA D YL + +L + E G L + C Sbjct: 133 HYLGVTLEKGSQKADWAKRPLTPRMEAYARNDTHYLKHLADRLKSDLEVKGRLGWHQELC 192 Query: 184 RLMQMR--RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + + P+ W I + +L LA L+ + WR +A + FV+R Sbjct: 193 ARLIIECSQNPEPDPDLVW-RIKGSNRLYRPALAVLREVWRWREAEAIVANRPPYFVLRH 251 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLN--LMD 299 E L ++ S + L R TL +++ ++P + P+P+ + Sbjct: 252 ETLIDLSAAA-ASGHPVQPLLPQKFSDRRRA-TLSEAIKRGLSVPHEQQPEPLRHEARRL 309 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 R+ + ++ + I L+ASR + L + P+L++ W+ Sbjct: 310 SEADRRRVEELQKRRDARATELGIDPTLIASRATLLDLAE-----DWDRHAPDLMN-WQR 363 Query: 360 ELMAEAL 366 ELM +A Sbjct: 364 ELMTQAA 370 >UniRef50_Q4DSE3 Ribosomal RNA processing protein 6, putative n=4 Tax=Trypanosoma RepID=Q4DSE3_TRYCR Length = 768 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 66/297 (22%), Positives = 110/297 (37%), Gaps = 15/297 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + + L + + IA+D E +Y L+Q+ LID L + Sbjct: 269 RFVDATVDLEDVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCLKLRSS 328 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +P+I K LH ED+ FG DT I P G A V Sbjct: 329 MHLLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIALQTLHMP--HGLAFAV 386 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-------GW 175 + + V LDK DW RP+ YA D +LL + +L S Sbjct: 387 DHFCQVKLDKKYQTADWRIRPIPAEMATYARQDTHFLLYVYDRLKTLLLNSEGRASIGNL 446 Query: 176 LPAALDECRLMQMRRQEVV--APEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARER 231 L L+E R + + E P+ +++ L + Q+ + + +WR ARE Sbjct: 447 LVHVLNESRRLSLEIYEKPQLDPDASYKIALGRSLGGLSSMQMKVAREIFNWRDAIAREV 506 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPE 287 D + V+ + ++A +P S + L +R + L+ +V+ + Sbjct: 507 DDSPPAVLHLSAVLAIATKLPTSANDVLKCCTPVSMVVRTNVTRLVQIVKDSLGDDA 563 >UniRef50_A4ALP3 Ribonuclease n=4 Tax=Actinobacteria (class) RepID=A4ALP3_9ACTN Length = 418 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 155/383 (40%), Gaps = 22/383 (5%) Query: 4 QMITTDDALASLCEAVRAF-PAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT 61 +I + + EA+ A I +D E Y + LIQ+ G L DP I Sbjct: 25 IVIDEREDYLAAVEAIAAGNGPIGIDAERASGYRYSQRAYLIQIFRRGAGTFLFDPPAIG 84 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D+S L ++ + LHA ++DL G P L DT++ A G P G ++ Sbjct: 85 DFSELNDVIANEE--WILHAATQDLTCL-REVGLYPTRLFDTELGARIAGLP-RVGLGTV 140 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE + G+ L K S DW RPL + YAA DV L+ + L +++ A Sbjct: 141 VEHFLGIHLAKEHSSADWSTRPLPQAWLVYAALDVELLVDLREALGELLDSADKHDIAQQ 200 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + R ++ + WR ++ +R + LA + L R A+E D A +V Sbjct: 201 EFDSVLARDL-IIVRAEPWRRLSGVHSVRGGKNLAVARELWVARDAYAQEVDTAPGRLVP 259 Query: 241 EEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPE--------DALP 291 + L + AR +P + +L +L SG R A ++ + D LP Sbjct: 260 DSALVAAARVLPETKRQLSALKEFSGRASRTQLDRWWAAIQTGLASTDIPSSRVVNDTLP 319 Query: 292 QPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 P + P + KA ++ + + SE I E L + + ++ ++ Sbjct: 320 PPRVWSEKNPEADRRLKAARASMMEASEEISIPIENLLTPDYLRRIAWTPPTEISVESIS 379 Query: 352 ELI-----SGWRGELMAEALHNL 369 + + W+ ++ A+++ Sbjct: 380 DALRELGARQWQLDVSAQSIAQA 402 >UniRef50_A6SCE7 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A6SCE7_BOTFB Length = 823 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 124/330 (37%), Gaps = 27/330 (8%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E ++ IA+D E TR+Y + L+Q+ E ++D L Sbjct: 224 TFVDTYEGVLEMLEELKGATEIAVDLEHHDTRSYVGLVSLMQVSTREKDWIVDTLKPWRQ 283 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + DP+I K H D+ G L DT G A + Sbjct: 284 QLQVLNEVFADPNIIKVFHGAYMDIVWLQRDLGLYVVGLFDTHYACRRLGFAGG-SLAFL 342 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG------- 174 +++Y DK DW RPL E YA AD +LL I L E + Sbjct: 343 LKKYIDFDADKKYQLADWRIRPLPEEMFFYARADTHFLLYIFDNLRNELLDAPDVETPDA 402 Query: 175 ------WLPAALDECRLMQMRRQEVVAP-------EDAWRDI--TNAWQLRTRQLACLQL 219 + L + + + R E W + L + Q + + Sbjct: 403 ETPAATSMDIVLQKSKETSLLRYERQLYNAESGKGPGGWFSLIYKTPALLSSEQFSVFKA 462 Query: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLAL 278 + WR + AR+ D ++NFV+ + ++A++MP + L S + ++ LL + Sbjct: 463 VHAWRDQIARKDDDSINFVMSNSVVVNLAKFMPMDMIALLSIIRPISHSVKSRTGELLEV 522 Query: 279 VEKAQTLPEDALPQPMLNLMDMPGYRKAFK 308 ++ A+ +D P+ + L P K Sbjct: 523 IKAAKENGKDG-PKSIDVLRKSPDSVATPK 551 >UniRef50_D2SEB8 3'-5' exonuclease n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SEB8_9ACTO Length = 418 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 100/387 (25%), Positives = 153/387 (39%), Gaps = 24/387 (6%) Query: 5 MITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 +I T AL EA+ +A+D E Y + L+QL G LIDP+ + D Sbjct: 36 VIETSTALVEYAEALAAGSGPVAVDAERASGYRYGQRAYLVQLRRVGTGTGLIDPIPLPD 95 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S +++ + D LHA S+DL G +P L DT++ A G P G ++V Sbjct: 96 LSVVQSAIVDAE--WVLHAASQDLPSL-AEVGLVPARLFDTELAARLAGLP-RVGLGAVV 151 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G L+K S DW RPL E YAA DV L+ + L E G A E Sbjct: 152 ESLLGYRLEKGHSAADWSTRPLPEEWLVYAALDVEVLVDLRDALAAVLEEQGKTEWARQE 211 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + D WR + LR RQL L+ L R AR RD+A V+ + Sbjct: 212 FAAI-LAAGPPAPRADPWRRTSGVHGLRSRRQLGMLRSLWQARDELARRRDIAPGRVLPD 270 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQTLPEDAL---------- 290 + S + P + L L + R T + + + LPE L Sbjct: 271 AAMVSAVQADPRTEAALLELPVFRGRANRKLVGTWFGALTRGRELPESELPLHSRPGDGP 330 Query: 291 PQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNL 350 P P +A ++ + +++ TH + E L S + +L+ + + + Sbjct: 331 PPVNRWADRDPAAATRLQAARAGLAELAATHSLPVENLLSPDLVRRLMWTPPEPRDAETV 390 Query: 351 PELISG-----WRGELMAEALHNLLQE 372 + W+ EL + L + L Sbjct: 391 AATLRAGGAREWQVELTRDLLTDALDR 417 >UniRef50_UPI0001746047 ribonuclease D, putative n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746047 Length = 381 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 153/377 (40%), Gaps = 23/377 (6%) Query: 2 NYQMITTDDALASLCEAVR------AFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALI 55 +Y I T++ L L + + LDTE + +L LIQL ALI Sbjct: 13 DYYWIDTEEQLRGLAADLNSLITRGELTRVYLDTEADSLHHFQEKLCLIQLAANGIYALI 72 Query: 56 DPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 DPL ++D PL ++ + + + H+ DL + P L DTQ+ A G + Sbjct: 73 DPLVLSDLGPLLEVVDNAEV--WFHSADYDLTLLKRTCNWTPTHLKDTQVAARLTGHR-T 129 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW 175 +G A++VE++ GVTL KS + DW RPL + YA DV YL + M + A Sbjct: 130 FGLAALVEQHCGVTLCKSSQKEDWSLRPLPAKMQAYAVDDVRYLGRLVDIFMTDLVAKDR 189 Query: 176 LPAALDECRLMQM--RRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDL 233 + C ++ ++ ++AW I+ + +LR LA L+ + +WR ARE+D+ Sbjct: 190 VTWFEQSCESLRRDVLSRQEKDRDEAW-RISGSGRLRPAGLAILREVWNWRDGIAREKDV 248 Query: 234 AVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQP 293 V+ + + ++A S +T A V + + + P+ Sbjct: 249 PPFRVLNNQQMLTMATEFETSGTA----HPPPRWRGRWKETFEAAVTRVKKADPASWPER 304 Query: 294 MLN--LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 R + +E + LL SR + L+ L P + Sbjct: 305 PKKHARRMTDQDRAKIDRLCQARDLKAEGLGLETSLLGSRGLMEDLV-----LNPDGEVR 359 Query: 352 ELISGWRGELMAEALHN 368 + W+ E++ + L Sbjct: 360 NKLMAWQREVLQDVLSK 376 >UniRef50_C1E3A4 Predicted protein (Fragment) n=2 Tax=Mamiellales RepID=C1E3A4_9CHLO Length = 332 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 114/298 (38%), Gaps = 19/298 (6%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + T +AL + + +A+D E R++ +IQ+ ++D L + Sbjct: 36 VFVDTPEALEDMVAHLDKSNEMAVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALELRGL 95 Query: 64 --SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L ++ DP + K H D++ FG + DT A P S G A + Sbjct: 96 IRDALGPVMADPRVMKVFHGADMDVQWLQRDFGIYVVGMFDTGQAARVLELP-SKGLAYL 154 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW------ 175 ++ Y V DK DW RPL+E YA D +LL + +L + +A G Sbjct: 155 LDHYCSVKADKRFQLADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLDAVGRGDGSKP 214 Query: 176 ----LPAALDECRLMQMRRQEVV-----APEDAWRDITNAWQLRTRQLACLQLLADWRLR 226 + LD R + E +R +A L +LA L WR Sbjct: 215 FRDLIRTTLDRSRDVCATLYEKPVTHPLTYHADYRKNRDAGDLDLPRLAVYAALHGWRDE 274 Query: 227 KARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQ 283 + R D ++ +V+ + +AR P + L ++ + H L+ ++ +A Sbjct: 275 RCRAEDESIGYVMPRALMLRLAREAPTNPRALLAVTRGDSPLVAKHSGELVDIISRAL 332 >UniRef50_A4IA84 Exosome subunit rrp6p homologue, putative n=3 Tax=Leishmania RepID=A4IA84_LEIIN Length = 743 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 67/299 (22%), Positives = 114/299 (38%), Gaps = 15/299 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-D 62 + T A+ ++ + IA+D E +Y L+Q+ E ++D L + Sbjct: 234 TFVDTSVAMQAMIAKLLLASEIAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKLRSS 293 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + +PSI K LH ED+ F DT + P A V Sbjct: 294 MGALAPVFLNPSILKVLHGAREDIRWLQKDFSLYVVNFFDTGVALQTLHMP--HSLAFAV 351 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-------W 175 + + V L+K DW RPL+ YA D +LL + +L S Sbjct: 352 DHFCQVKLNKKYQTADWRVRPLSAEMVHYARQDTHFLLYVYDRLKALLLNSEGRASIGSL 411 Query: 176 LPAALDECRLMQMRRQEVVA--PEDAWRDITNA--WQLRTRQLACLQLLADWRLRKARER 231 L +E + + ++ E + PE+ ++ L Q + + +WR ARE Sbjct: 412 LVHVYNESKQLSLQIYEKPSVVPEETYKIALGRSLSGLNKVQEKVARDVFNWRDSAAREV 471 Query: 232 DLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDA 289 D + V+ + S+A +P + L + + +R + L+ LV+ A ED Sbjct: 472 DDSPTAVLHLSSVLSIASKLPTTAKALLRCCAPATAVVRDNVALLVDLVKDAVASGEDD 530 >UniRef50_C8NPA1 Ribonuclease D n=9 Tax=Corynebacterium RepID=C8NPA1_COREF Length = 407 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 141/390 (36%), Gaps = 28/390 (7%) Query: 5 MITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDP--LGI 60 ++TT + + + A+DTE Y + LIQ+ L DP Sbjct: 15 LLTTPAQFEAAADVLAGGSGPFAIDTERASGFRYDDRAFLIQIRRRGAGTLLFDPESHRP 74 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 L +L +HA + DL P L DT++ G + A+ Sbjct: 75 ELSRSLGPVLN--GQEWIIHAAATDLPSL-AWLDLHPGTLFDTELAGRLAGFEL-VNLAA 130 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 MVE+ + L K DW RPL E YAA DV LL + + + G L A Sbjct: 131 MVEQIFDLHLLKGHGAEDWSKRPLPEEWLNYAALDVEMLLELADVMAEILDNQGKLDWAE 190 Query: 181 DECRLMQMRRQEVVA-PEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFV 238 E ++ + +V P +W D+ L R QL + + R A RDLA V Sbjct: 191 QEFEHIRTQFADVTEAPTLSWTDMKGVGTLKRPEQLVVAREMWMARDSIAAARDLAAGKV 250 Query: 239 VREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 + + + AR +P + G+L + K + ++ +A P P+P Sbjct: 251 LSNKVIVETARTLPRTFGDLARVKGFPGRNTGTVKRWMRVINRALASPRHTWPRPQPRPD 310 Query: 299 DMPGYR----------KAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN 348 +P R + + I++ I D+ I E + + ++ + Sbjct: 311 GVPDRRYWSSFHPEEYEILQGIRADIDDLGAELNIPGENILQPAALRAVVWMSTNTGEVH 370 Query: 349 NLPELI--------SGWRGELMAEALHNLL 370 + L+ W+ E ++ L N L Sbjct: 371 DQDSLMGALRDYGVRPWQVEQVSPILINAL 400 >UniRef50_Q6SGG6 Ribonuclease D, putative n=4 Tax=Bacteria RepID=Q6SGG6_9BACT Length = 358 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 148/362 (40%), Gaps = 27/362 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 +I T L + + ++A+DTEF R TYYP+L L+Q+ + ID L I D Sbjct: 13 TLIQTRPQLERYLKTINNDSSLAIDTEFKRINTYYPELCLVQIATTQFAECIDVLSINDL 72 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 PL L +H+ +D+E ++ +P L DTQI A+ P+ + ++ E Sbjct: 73 EPLFEKLYHNKTEWIVHSARQDIEALYHLSKRIPVSLFDTQIAASLLNYPLQISYQALTE 132 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 V LDKS +R DW RPL EYA DV YLLP KL E S + +E Sbjct: 133 ILQDVLLDKSYTRFDWTTRPLPANVVEYALDDVRYLLPNFEKLKHELTISKKIQWLDEET 192 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 R + + + E +L + L WR + A++++ +++ ++ Sbjct: 193 RFLLDQELYKPSIEQICYKTKGLSKLGKKFQDKAIKLVTWREKSAQQKNKPRKWIMSDQK 252 Query: 244 LWSVA---RYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM 300 L A + +L + S + LL P L Sbjct: 253 LLDYACGKSKLSTRSQKLFDDFVKESSVNLTLSELLT---------------PQKPLTSS 297 Query: 301 PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE 360 +K ++ +I ++E++ + E++++ + + + + L SGWR + Sbjct: 298 EKNKK--NELQRIINSLAESYNLPPEVISTSKSLKKFIRGDLSA-------PLFSGWRAK 348 Query: 361 LM 362 L Sbjct: 349 LF 350 >UniRef50_Q23S17 3'-5' exonuclease family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23S17_TETTH Length = 881 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 133/329 (40%), Gaps = 15/329 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI- 60 + +D L + E+++ +A+D E R++ L+Q+ ++D + Sbjct: 243 ELVFVDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISSRTKDYIVDVFSVW 302 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 L A+ D +I K LH D++ FG L DT A P S+ A Sbjct: 303 KSLHKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDTGQAARTLSMP-SYALAY 361 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET---------E 171 +++ S V DK DW RPL YA +D YLL I L ++ Sbjct: 362 LLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYDNLRIQLVSKALQQGQN 421 Query: 172 ASGWLPAALDECRLMQMRRQEVVA-PEDAWRDITNAWQ--LRTRQLACLQLLADWRLRKA 228 AS ++ + L++ R + +++ ++ + I + L R+ L+ L +WR + A Sbjct: 422 ASHFIESVLNKSRAICLKKYVKPILDDEKYHSILQNQRIILSDRKFRILKRLLEWRYKMA 481 Query: 229 RERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEI-RFHGKTLLALVEKAQTLPE 287 + D FV+ + L+++ +P + E S L S + ++H +L+++++ + Sbjct: 482 AKYDENPTFVLANDILFNIVNRLPQTQKEFASSNLKLSYVCQYHANEILSIIKEEIESEQ 541 Query: 288 DALPQPMLNLMDMPGYRKAFKAIKSLITD 316 + + + I + Sbjct: 542 KSKSGESESATKNQSEMETEDLIYASRNH 570 >UniRef50_A8L0K3 3'-5' exonuclease n=84 Tax=Actinomycetales RepID=A8L0K3_FRASN Length = 499 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 138/377 (36%), Gaps = 25/377 (6%) Query: 5 MITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ L E + +A D E Y + L+Q+ G LIDP+ + D Sbjct: 64 VLDDPQDLTRATERLAAGTGPVAFDAERASGYRYSQRAYLVQIRRAGAGTLLIDPIALPD 123 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S ++ + D LHA S+DL G P+ L DT++ G G +MV Sbjct: 124 LSGVQDAVGDTE--WVLHAASQDLPCL-AELGLRPKTLFDTELAGRLLGYE-RVGLGAMV 179 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G L+K S DW RPL E YAA DV L+ + +L E A + A E Sbjct: 180 ERVLGFGLEKGHSAADWSNRPLPEPWLRYAALDVELLVELRDQLESELVAQNKMAFARQE 239 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + WR + + R RQLA ++ + R R AR RD+A V+ + Sbjct: 240 FDAIA-AAPPREPRAEPWRRTSGIHRARSRRQLAAVRSMWQARDRVARTRDIAPGRVLPD 298 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDALPQPM------ 294 + P L L SG +R T + + A +PE+ LP Sbjct: 299 IAIMDAVLKAPEDAAALTRLPIFSGPRLRRSATTWMDALRAAAEMPENQLPSTAGPGGDG 358 Query: 295 -----LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 P +++ + ++E + E L ++ + Sbjct: 359 LPPQNRWAERDPVAAARLARVRAALNAIAEDQGMPVENLLEPALARRVTWTPPATRDTET 418 Query: 350 LPELI-----SGWRGEL 361 + + W+ EL Sbjct: 419 VTAALTTGGARPWQVEL 435 >UniRef50_UPI0001758213 PREDICTED: similar to Rrp6 CG7292-PB n=1 Tax=Tribolium castaneum RepID=UPI0001758213 Length = 947 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 106/297 (35%), Gaps = 14/297 (4%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 I + L L E +R ++D E R++ LIQ+ + LID L + D S Sbjct: 259 IDKAEQLDELVETLRHCKEFSVDVEHHSYRSFMGITCLIQISTEDKDYLIDALALRDKLS 318 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + +I K H +D+E + DT A P A ++++ Sbjct: 319 ILNEVFTKNTIVKIFHGADKDIEWLQRDLSLYVVNMFDTHQAAKALQYPA-LSLAFLMKK 377 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS-----GWLPAA 179 + VT +K DW RPL + YA D YL+ I + E L + Sbjct: 378 FCNVTPNKQFQLADWRIRPLPDELKSYAREDTHYLIYIYKMMKRELLHKTNKCDKLLRSV 437 Query: 180 LDECRLMQMRRQEVVA-PEDAWRDITN--AWQLRTRQLACLQL---LADWRLRKARERDL 233 ++ + +R ED+ ++ RQ+ L+ Sbjct: 438 IERSTEVCKKRYFKPILHEDSHLELYRKCKKMFDNRQMYALKEXXXXXXXXXXXXXXXXX 497 Query: 234 AVNFVVREEHLWSVARYMPGSLG-ELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDA 289 + ++V+ L ++ +P + L +R H L ++ KA+ P + Sbjct: 498 SCSYVLPNHMLLQISELLPREMQGILACCNPIPPLVRSHLLELHQIILKAREQPLEK 554 >UniRef50_D0YSP9 Ribonuclease D n=1 Tax=Mobiluncus mulieris 28-1 RepID=D0YSP9_9ACTO Length = 422 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 156/391 (39%), Gaps = 27/391 (6%) Query: 5 MITTDDALASLCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 ++ T ALA +CE ++ALDTE Y+ L+QL + LIDP D Sbjct: 37 VVNTPPALARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPD 96 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL A + LH + D+ G P+ L DT++ A +G S+ Sbjct: 97 LEPLGAAIGKAE--WILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNFE-RFGLGSLT 152 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G+ L+K S DW RPL + EYAA DV +L+ + L ++ +G A E Sbjct: 153 EQVLGIMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQE 212 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + P D WR + + + R LA L+ L R + +LA V+ Sbjct: 213 FEHLLYFEPPAPKP-DPWRHVPGSGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 271 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEI--RFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 L ++A +P ++S+ ++ R T A + ++ LP LP + Sbjct: 272 PALIALAVALPRGKRYMNSIEAFRNDRVGRERADTWYAALSRSYKLPVHELPSKRAPRVR 331 Query: 300 ------------MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQ 347 P + + ++ ++ ++ + +E++ R +L P+ Sbjct: 332 GAVPDARNFAHNHPQEAERWHRLRDVVIQIAAELNVHSEVMLDSRTTRRLAWVLPDNAPE 391 Query: 348 NNLPELI-----SGWRGELMAEALHNLLQEY 373 + E++ W+ E + + L L+ Sbjct: 392 PQVLEVLQASEARPWQIEHLLDGLVKALRSE 422 >UniRef50_Q6A8V2 Ribonuclease D n=2 Tax=Propionibacterium acnes RepID=Q6A8V2_PROAC Length = 412 Score = 244 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 150/398 (37%), Gaps = 35/398 (8%) Query: 5 MITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T D+L C A+ IA+DTE Y P+ LIQL DG L+DPL + Sbjct: 17 VVNTPDSLTHTCRALSNGHGPIAIDTERAHGFRYSPRACLIQLRRDGSGTHLVDPLALGG 76 Query: 63 ---WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 PL L LHA ++D+ G P L DT++ P Sbjct: 77 AVGLKPLAKALAGTQ--WILHAATQDMPCLAMD-GLRPDDLFDTELAGRLLNLP-RVSLG 132 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 MVE Y GVTL K S +DW RPL YAA DV L + K++ + +G A Sbjct: 133 PMVERYCGVTLLKEHSASDWSRRPLPRDWQVYAALDVELLNDLREKILSDLHEAGKEEWA 192 Query: 180 LDECRLMQ-----MRRQEVVAPEDAWRDITNAWQLRTR-QLACLQLLADWRLRKARERDL 233 E + + +E WR +++ + +R L L R A + D+ Sbjct: 193 RQEFAHLVEVAADLPSEEPGIDPKRWRKLSHIGDIHSRAGLQLAHDLWLARENLAHDLDI 252 Query: 234 AVNFVVREEHLWSVARYMPGS-----LGELDSLGLSGSEIRFHGKTLLALVEKAQTLPED 288 ++R+E L + AR+ + L G + + +T + A+++ Sbjct: 253 MPGRLLRDEALVAAARHCDRTGNVDVETVLAIRGFHRGRAKKYRQTWAEAINHARSVSPT 312 Query: 289 ALPQ----------PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL 338 P P P + A++ + DV+ H + E L + + Sbjct: 313 KYPPLREPSSGIPHPRSWERHHPEEAARWAAVRPAVNDVAADHDVPPENLCTPTWLRHFA 372 Query: 339 NWHWKLKPQNNLPELISG-----WRGELMAEALHNLLQ 371 + + + G W+ E+++ L ++ Sbjct: 373 WQPPEDCSVEGVDVFLEGLGARPWQREILSGPLSAVMA 410 >UniRef50_C7R4I8 3'-5' exonuclease n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R4I8_JONDD Length = 406 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 157/387 (40%), Gaps = 28/387 (7%) Query: 5 MITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T + + + R A+D E Y + LIQ+ +G LIDP + D Sbjct: 23 LVNTTVSYQAALRRLDRGHGPFAVDAERASGYRYGDRNYLIQVRREGAGTFLIDPTAVDD 82 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 +S L A++ T HA +DL G P + DT++ A G A++ Sbjct: 83 FSELNAVMAAD--TWIFHAAIQDLGPL-RDQGLTPGTIFDTEVAARLLGL-DRVNLAAVT 138 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 + GVTL+K S DW RPL YAA DV L + + L A +E Sbjct: 139 AHFLGVTLEKQHSHQDWSTRPLPSSWLTYAALDVELLGDLAISETDALTETRKLRWAHEE 198 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 +Q +R + D WR + ++ R+LA +Q L + R + AR +DLA + ++ + Sbjct: 199 FAYIQAQRA--IHRPDPWRRTSGIQRVTDRRRLAVVQHLWNEREKIARSKDLAPSRILSD 256 Query: 242 EHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALVEKAQTLPEDA----------- 289 + A +P ++G L ++ G+ R + A TLP Sbjct: 257 RGIIEAAITLPRTVGALLAIHEFGGAANRRRSHQWQRAINHALTLPSSELPPRRLPAPPK 316 Query: 290 LPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 LP + P A + + +++ TH + E + + + QLL + Sbjct: 317 LPPHKIWEEKNPLAATRLTAAREFLDELAATHHLPVENIIQPKVVRQLLWDATTT--PID 374 Query: 350 LPELI-----SGWRGELMAEALHNLLQ 371 +P + W+ EL+A+ L ++ Sbjct: 375 VPAYLTNNQVRPWQQELVAQTLTMIID 401 >UniRef50_C2KQ41 Ribonuclease D n=2 Tax=Mobiluncus RepID=C2KQ41_9ACTO Length = 397 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 156/391 (39%), Gaps = 27/391 (6%) Query: 5 MITTDDALASLCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD 62 ++ T ALA +CE ++ALDTE Y+ L+QL + LIDP D Sbjct: 12 VVNTPPALARVCELVAAGSGSVALDTERAGAFRYFQGAYLVQLRREDTGTFLIDPTAFPD 71 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 PL A + LH + D+ G P+ L DT++ A +G S+ Sbjct: 72 LEPLGAAIGKAE--WILHDATTDMPWL-AEIGMRPKLLFDTELAAKLLNFE-RFGLGSLT 127 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G+ L+K S DW RPL + EYAA DV +L+ + L ++ +G A E Sbjct: 128 EQVLGIMLEKEHSAADWSTRPLPQSWLEYAALDVEFLVDLRQALWLQLGEAGKDDWAEQE 187 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQ-LRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + P D WR + + + R LA L+ L R + +LA V+ Sbjct: 188 FEHLLYFEPPAPKP-DPWRHVPGSGKVYSPRNLAALRELWQTREKICAAENLAPTKVLSN 246 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEI--RFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 L ++A +P ++S+ ++ R T A + ++ LP LP + Sbjct: 247 PALIALAVALPRGKRYMNSIEAFRNDRVGRERADTWYAALSRSYKLPVHELPSKRAPRVR 306 Query: 300 ------------MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQ 347 P + + ++ ++ ++ + +E++ R +L P+ Sbjct: 307 GAVPDARNFAHNHPQEAERWHRLRDVVIQIAAELNVHSEVMLDSRTTRRLAWVLPDNAPE 366 Query: 348 NNLPELI-----SGWRGELMAEALHNLLQEY 373 + E++ W+ E + + L L+ Sbjct: 367 PQVLEVLQASEARPWQIEHLLDGLVKALRSE 397 >UniRef50_UPI000023ED22 hypothetical protein FG06049.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023ED22 Length = 807 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 64/302 (21%), Positives = 110/302 (36%), Gaps = 22/302 (7%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + + IA+D E R+Y + L+Q+ E ++D L Sbjct: 223 TYVDTYEGVLEMLGELMKAKEIAVDLEHHDFRSYVGLVSLMQISTREKDWIVDTLQPWRH 282 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + +P I K H D+ G L DT P A + Sbjct: 283 KLEVLNQVFTNPKIVKVFHGAYMDIIWLQRDLGLYVNGLFDTFFACGQLNYPAK-SLAYL 341 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA--------S 173 + ++ DK DW RPL + YA +D YLL I ++ E A Sbjct: 342 LSKFVDFDADKKYQLADWRLRPLPQEMLYYARSDTHYLLYIYDRVRNELVAASDKTDADK 401 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQ----------LRTRQLACLQLLADW 223 + AL++ R + R E ++ + + W + Q + + L W Sbjct: 402 DLIGRALEKSREQSLSRYEHPDYDEETGEGSRGWSSYIFKNSHMAFDSEQFSVFRALWKW 461 Query: 224 RLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGL-SGSEIRFHGKTLLALVEKA 282 R AR+ D + NFV+ + +AR P L SL + S R + ++++ Sbjct: 462 RDDTARKEDESTNFVLGNRDISEIARINPPDAKALHSLLPLNASLARSRFNEIWGYIKES 521 Query: 283 QT 284 + Sbjct: 522 KA 523 >UniRef50_UPI0000D56CFF PREDICTED: similar to Rrp6 CG7292-PB n=1 Tax=Tribolium castaneum RepID=UPI0000D56CFF Length = 377 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 6/303 (1%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64 I T +L L ++A+ + +D E+ Y L+Q+ + +ID + + D Sbjct: 76 IDTKTSLEELITDLKAWKELGVDVEY-SDHGYKALTCLVQISTPDKDYIIDAIALKDELH 134 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L + +P I K H+ DL+ G L DTQI G G +++++ Sbjct: 135 ALNEVFTNPDIVKIFHSAVNDLKWLQQDLGVFVVNLFDTQIAMKALGY-KKLGLDALLQD 193 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y V DK+ R D+ RPL + +YA D YL+ KL E + L A LD+C Sbjct: 194 Y-HVAKDKTMQRQDFRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANLLRAVLDDCN 252 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 V E N ++ RQL L+ L WR + A+ D V V+ + ++ Sbjct: 253 NCCKILYPKVEDEAYLSVRRNVEEIHKRQLLVLEKLNSWRHQIAQYLDKNVGCVLSKSNM 312 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYR 304 ++ MP ++ + S ++ H ++ ++ + + + LPQ Sbjct: 313 ETLVLQMPSDSADIMQIS-QSSHVKEHLDEVMQILSEGNPV-RNTLPQRDRKPFWNKQAA 370 Query: 305 KAF 307 K F Sbjct: 371 KRF 373 >UniRef50_B0S9S6 Ribonuclease III n=6 Tax=Leptospira RepID=B0S9S6_LEPBA Length = 406 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 145/375 (38%), Gaps = 9/375 (2%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 NY ++ T AL +R +++DTE TYYP++ LIQ+ LIDPL IT Sbjct: 6 NYILVDTAKALDLALINLRQSKIMSIDTESSGYYTYYPKVCLIQINSNGKNYLIDPLKIT 65 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + S L + DP+I K H+ +D++ FG DT I ++ + + Sbjct: 66 NLSALGPLFEDPNILKIFHSAQDDIKALKRDFGFKFVNTADTMI-SSRLLSLEQSSLSFV 124 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE Y VTL K E +++W RPL ++Q +YAA D YL I K+ + + A Sbjct: 125 VEHYHKVTLSKVEQKSNWEIRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSLYDEAKS 184 Query: 182 ECRLMQMRRQEVVAPED-AWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + E + + + + L +R KA+ + A V Sbjct: 185 EFDFIASEDYVAKEGEGFSLGKFPDILNFTPLERRKILELLRYRDEKAKRINKASFRVFN 244 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD- 299 + L + P ++ G + G + L+ P D + D Sbjct: 245 NDRLSQSVKEQPNEEKCIEWFG------KKDGTEIYKLLIAEYNDPIDTSELSKRHGEDL 298 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 F+ K + ++ LL S +Q+ +L K + + S W+ Sbjct: 299 NEDENHKFQNAKKWRLRIMRARRMEHSLLPSNKQLITVLRAAPKNLEELKALNVFSDWKV 358 Query: 360 ELMAEALHNLLQEYP 374 + +L +Q P Sbjct: 359 QNYGPSLLAAIQGLP 373 >UniRef50_B1ZWM0 3'-5' exonuclease n=2 Tax=Opitutaceae RepID=B1ZWM0_OPITP Length = 391 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 152/372 (40%), Gaps = 18/372 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y +I LA L A+ +ALDTE Y ++ L+Q G + L+D L Sbjct: 24 EYVLIDQPGQLAPLLAALDRVDEVALDTEADNMFHYRTRVCLLQFLVGREIFLVDVLAPL 83 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L A L + ++ +H DL + + P+ + DT + A RP G AS+ Sbjct: 84 PFEGLWARLAEKNL--IMHGSDFDLRLLHDFCRFRPKSIFDTMLAAQLINRP-RIGLASL 140 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 +E++ GV L K + +W RPLT++ +YAA DV++L + L E G + Sbjct: 141 LEDHFGVKLSKESQKANWSKRPLTKKMLDYAALDVFHLPALRDILTRELTKLGRIEWLRQ 200 Query: 182 ECR-LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 +CR ++ P++ I + +LR L L + WR + A+ D+ V Sbjct: 201 QCRAQIEAGSIGFAPPDENDWRIGRSEKLRGPGLGVLHAVWHWREQTAQRLDVPPFKVCS 260 Query: 241 EEHLWSVARYMP---GSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 + L +A+ L S+ L R +L A V LP+ Sbjct: 261 ADLLLRLAQAAENGDAEAAILASVHLGRRHDRL-LPSLTAAVHAGLARDPKTLPRRRGRD 319 Query: 298 MDM----PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL 353 + + IK ++ ++ L+A+R Q+ Q+ + L +L Sbjct: 320 PNHVALTQAEIERLDRIKDDRDRIAAKLQLEPTLIANRSQLAQIAR------APDRLDDL 373 Query: 354 ISGWRGELMAEA 365 + W+ EL+ + Sbjct: 374 LLPWQAELLRDQ 385 >UniRef50_B0EQ49 Exosome complex exonuclease RRP6, putative n=2 Tax=Entamoeba RepID=B0EQ49_ENTDI Length = 517 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 117/309 (37%), Gaps = 5/309 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 + T + L + ++ A+D E +YY + L+Q+ +ID + + D Sbjct: 188 VYVNTLELLQEMIISLNHVNQFAVDVEHHSEHSYYGFVCLLQISTRSSDYIIDTITLRDS 247 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L +P+I K H D+ FG ID+ A + ++ Sbjct: 248 ITLLNDPFTNPNIEKVFHGCDFDMIWLSYNFGLYVVNCIDSGQCARALKL-QHFSLKYLL 306 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 ++Y V DK DW RPLT+ EYA D YLL I +L E G L L++ Sbjct: 307 QKYCNVDADKKYQLADWRLRPLTKEMIEYARGDTHYLLYIIDQLRNECIDVGILEEVLNK 366 Query: 183 CRLMQMR-RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + +R + V +D + ++ Q + L R + AR D + ++ Sbjct: 367 SNELCLRLFRPTVCSDDVIERVARRSWIKKTQFDTFKKLYLLRDKIARIEDESPESIINM 426 Query: 242 EHLWSVARYMPGSLGELD--SLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 L ++ +P L +L L + H + L ++ + + L Q N Sbjct: 427 TMLSNIVNELPTDLEKLRLCCLPKVPYFVEMHASEFILLTKQEHQIKLNQLQQIQTNETI 486 Query: 300 MPGYRKAFK 308 + K + Sbjct: 487 LSDTVKFVQ 495 >UniRef50_D0MWN1 Exosome complex exonuclease RRP6-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWN1_PHYIN Length = 1465 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 119/328 (36%), Gaps = 23/328 (7%) Query: 1 MNYQMITTDDALASLCEAV--RAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL 58 ++Y + +++ L + +++ IA+D E R+Y L+Q+ + L+D L Sbjct: 242 VSYLWVDSEENLMQMMKSLTAAEARVIAVDLEHHSYRSYMGLTCLMQISTAQEDFLVDTL 301 Query: 59 GIT-DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 + L + DP K LH D+ G L DT A P + Sbjct: 302 ALRGKLQTLNQVFCDPEKVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARLLQYP-RFS 360 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG--- 174 A M++ + + DK DW RPL + +YA D YLL I +L E +G Sbjct: 361 LAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQAGAKS 420 Query: 175 ---WLPAALDECRLMQMRRQEVVAPED-----AWRDITNA---WQLRTRQLACLQLLADW 223 L L + ++ E P + + L Q + L W Sbjct: 421 RESLLFQTLQNSSKLCLQVYEKPQPTEEDALAVGEKLKGTVYLRDLSALQKRVIVALYLW 480 Query: 224 RLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKA 282 R R AR+ D +V +V+ L + +++P +L IR H + ++ Sbjct: 481 RDRVARQEDESVAYVMPNHVLMKLTKHLPVRSDDLFRVCHPVPLLIRKHALQITKMIVAE 540 Query: 283 Q----TLPEDALPQPMLNLMDMPGYRKA 306 + P+P + P + Sbjct: 541 KTKLAAEETKTRPEPQPAVAARPTRKTW 568 >UniRef50_Q5KK81 PM-scl autoantigen, putative n=3 Tax=Eukaryota RepID=Q5KK81_CRYNE Length = 1016 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 58/321 (18%), Positives = 105/321 (32%), Gaps = 42/321 (13%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61 ++ + T + L + E ++ IA+D E R+Y LIQ+ E ++D L + Sbjct: 309 FEFVDTPEKLHRMVEKLKQAKEIAVDLEHHDMRSYAGFTCLIQISTRESDWVVDTLALRK 368 Query: 62 --DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + DP+I K H D+ F L DT P + Sbjct: 369 EIQQDKFGDVFTDPTIVKVFHGADSDIIWLQRDFEIFVVNLFDTYSACVVLEMPQR-SLS 427 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET--------- 170 ++++ Y DK R DW RPL + YA +D +LL I L Sbjct: 428 ALLQHYCNFEADKRYQRADWRIRPLPDGMLYYARSDTHFLLFIYDNLRNALLHKSSRPSS 487 Query: 171 --------------EASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAW--------- 207 + L + ++ E + + + W Sbjct: 488 PANCGTIVLDSARPNPQEAMREVLGKSADTALKMYERDSYDIVTGRGSGGWLAAGKKWLP 547 Query: 208 --QLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL--GL 263 ++ + L DWR R ARE D + +++ L V+ + L + Sbjct: 548 KGEIEQESGWVWRHLHDWRDRVAREMDESPFYIMPNNMLRDVSTA--DNTANLSRIIRRD 605 Query: 264 SGSEIRFHGKTLLALVEKAQT 284 + + +++ A+ Sbjct: 606 RAPIAAQYIPEITSIIVAAKE 626 >UniRef50_Q4P181 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P181_USTMA Length = 1027 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 65/337 (19%), Positives = 110/337 (32%), Gaps = 34/337 (10%) Query: 3 YQMITTDDALASLCEAVRAFPA--IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 +Q ++T + L + + IA+D E RTY + L+QL +ID L Sbjct: 339 FQWVSTKQQIEQLRDHLDEPRVNEIAIDLEHHSYRTYQGIVCLMQLSTRWGDWIIDTLSD 398 Query: 61 T---DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 L + +P K LH + D+ G L DT P S G Sbjct: 399 DVRQHAELLNSSFTNPDKVKVLHGANHDVLWLQRDLGLYLVNLFDTYHATNVLMFP-SHG 457 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 ++ Y DK DW RPL + YA +D LL I L E +G + Sbjct: 458 LNYLMARYCNFDADKRYQLADWRIRPLPKEMLYYARSDTHTLLFIYDNLRHELMEAGGID 517 Query: 178 AALD---ECRLMQMRRQEVV------APEDAWRDITNAWQLR--------------TRQL 214 A + + + WR + W ++ Sbjct: 518 AIRQVFIRSKQVATATYAKEQWDTDGETREGWRTVWRKWGGEAALGTEHRKEVSQMKKEE 577 Query: 215 ACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGK 273 ++ L WR ARE D + +++ +L +A P + L + + + ++ Sbjct: 578 RLVRALHRWRDTVAREEDESPRYILGANNLMMLAARAPTTKQGVLACIPPNATGLKKRID 637 Query: 274 TLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAI 310 L +L+ + D R + + Sbjct: 638 ELASLIMA----EVADWQKDQQARRDESKQRLSAALL 670 >UniRef50_D1ICW5 Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1ICW5_VITVI Length = 901 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 110/293 (37%), Gaps = 14/293 (4%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 ++++ L L + A+D E + R++ L+Q+ ++D L + Sbjct: 216 FKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRI 275 Query: 63 W--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 L+ + +DP+ K +H D+ FG + DT + Sbjct: 276 HVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLKLE-RNSLEH 334 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLM------VETEASG 174 ++ Y GVT +K DW RPL YA D YLL I + E E S Sbjct: 335 LLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLMRTQLLSMAELENSN 394 Query: 175 -WLPAALDECRLMQMRRQEVV-APEDAWRDITNAW--QLRTRQLACLQLLADWRLRKARE 230 L + M+ E + ++ +QLA + L +WR AR Sbjct: 395 ALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLAIVAGLFEWRDVVARA 454 Query: 231 RDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSG-SEIRFHGKTLLALVEKA 282 D + +++ + L +A+ MP + +L L S + + +++++ + Sbjct: 455 EDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNLGPVVSIIRHS 507 >UniRef50_C7M0M9 3'-5' exonuclease n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0M9_ACIFD Length = 396 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 111/376 (29%), Positives = 170/376 (45%), Gaps = 18/376 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + L L P IA+DTEF R RTYYP+L L+Q+ + LIDPL + D Sbjct: 22 VWLDRQSDLDELVGVGLGVPRIAIDTEFHRERTYYPRLALVQVAIDRRVWLIDPLRV-DL 80 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 SP+ A + HA +DLE+ G P+ + DTQ+ F G ++++ Sbjct: 81 SPIAAWF--DEVELVFHAADQDLEIIERAVGARPRRIFDTQVAGGFLGAGH-ASLGALLD 137 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Y GV++ K+E +DWL RPL Q YAA DV YL + +L+ E A G A E Sbjct: 138 RYLGVSISKAERTSDWLRRPLEPGQLAYAANDVRYLAALADRLLEELHARGREDWARSEM 197 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + RR+ + PE AW I L +A WR R A+ D+ V V+ + Sbjct: 198 ARLVERRRRDIEPELAWTRIRECRGLDPTGRRIAASVAAWRERTAQRDDVPVRTVLSDLA 257 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD--- 299 + SVA+ P SL EL S+ G G + + LL +V A+ +DA+ MD Sbjct: 258 VASVAKARPSSLTELRSVRGFDGRMAKERARELLEVVRAAR--DDDAIVARGAVRMDRAL 315 Query: 300 MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRG 359 P ++L+ V+ ++ LL SR ++ ++ L+ GWR Sbjct: 316 DPHEVPLVLTAQALVHAVALELELEPSLLGSREEVELFVSRGEGS--------LLEGWRY 367 Query: 360 ELMAEALHNLLQEYPQ 375 +++ + +L + Sbjct: 368 DVVGRGIQAILAGERR 383 >UniRef50_UPI0001BC2C11 putative ribonuclease D n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2C11 Length = 384 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 145/381 (38%), Gaps = 18/381 (4%) Query: 5 MITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 ++ T +S C + IA+D E Y + L+QL L+D + D Sbjct: 11 LVDTPAEFSSACAELAQGSGPIAIDAERASGIRYDQRAFLVQLRRANAGTYLLDSEVLAD 70 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 SPL +H+ ++DL G P+ L DT++ A G +G A++ Sbjct: 71 LSPLNDAFAGAE--WVIHSVTQDLPCLQER-GMQPEVLFDTELAARMLGWEK-FGLAAVA 126 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E GV L K S DW RPL + YAA DV LLPI L + A E Sbjct: 127 ERTLGVRLAKEHSAADWSKRPLPKEWLNYAALDVEVLLPIRDILHEALIEADKWEFARQE 186 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + + WR +L + +A ++ L R A E D+A + ++R+ Sbjct: 187 FEHLLD--FQPKHFTEPWRRTHGLTKLKSRKDIAKVRELWTSRDEMAAESDIAPSRILRD 244 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPM------- 294 L ++A+ S ++ + R + L KA L + LP Sbjct: 245 RDLVALAQSRVQSSDDIMATW--PKLSRANSGRLYRAFRKATRLTTEELPARKEMHATQS 302 Query: 295 LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELI 354 + + A+K+ + ++SE H I ++L + L + Sbjct: 303 RSPFSHTDIKDRVSALKAAMAELSEEHTIPHDVLLQPAIVKALGAQSRVNVEEFLFERGA 362 Query: 355 SGWRGELMAEALHNLLQEYPQ 375 W+ EL A L + L+ P+ Sbjct: 363 RRWQVELSAPVLRSTLESLPR 383 >UniRef50_Q8T0Z8 PM-Scl autoantigen-like protein n=1 Tax=Bombyx mori RepID=Q8T0Z8_BOMMO Length = 451 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 65/294 (22%), Positives = 108/294 (36%), Gaps = 18/294 (6%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYP------QLGLIQLFDGEH-LALI 55 + I + L L E + A IA+D E R LIQ+ E +I Sbjct: 119 FTYIDIESKLDELVEHLMAVEQIAVDVEHHSYRDLSGLYLILGITCLIQISTDEGGDFII 178 Query: 56 DPLGITD-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM 114 D L + + L + DP K H D+ FG L DT A G P Sbjct: 179 DALAVREHIHKLNVVFTDPKKLKVFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPA 238 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS- 173 ++ +Y GV DK+ DW RPL + +YA D YLL + + + Sbjct: 239 -LSLKFLLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKN 297 Query: 174 ----GWLPAALDECRLMQMRRQEVVAPEDAW---RDITNAWQLRTRQLACLQLLADWRLR 226 L + ++ R D I + +Q+A L++L WR Sbjct: 298 AGQTNMLLSVFEDSRQTCASTYNKEVIHDESHIPLYIRSKKNFDNQQMAALKMLYKWRDS 357 Query: 227 KARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALV 279 +AR+ D + +++ L S++ +P L + ++ + T+ ++ Sbjct: 358 QARQLDESTTYLLPNHMLLSLSENLPRELQGVNACCDPMPPFVKQNVITIHRMI 411 >UniRef50_B6KGV1 Exosome component 10, putative n=3 Tax=Toxoplasma gondii RepID=B6KGV1_TOXGO Length = 1353 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 74/357 (20%), Positives = 120/357 (33%), Gaps = 42/357 (11%) Query: 6 ITTDDALASLCEAVRA--FPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 I + L L + + + +A+D E +Y L+QL E +IDP + Sbjct: 464 IAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLSTREKDYIIDPFALFDH 523 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L I +P I K H D+ F + DT + A P A+++ Sbjct: 524 LHVLNTITANPKILKIFHGADSDIIWLQRDFSVYVVNMFDTCVAARALAVPGGASLANLL 583 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL-- 180 + Y V +K DW RPLT YA +D YL I + + + L AAL Sbjct: 584 QTYCHVEANKQYQLADWRRRPLTPEMETYARSDTHYLPFIFDVMKNQLLSKPELGAALSP 643 Query: 181 ------------------------DECRLMQMR---RQEVVAPEDAWRDITNAW-QLRTR 212 + R + ++ AP +A + L Sbjct: 644 SAVTDFDGTLEVTEAGKQIMMFTMERSRDVCLKLHVEAPFDAPAEAEALLKRTRAGLSPL 703 Query: 213 QLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFH 271 L WR AR D + + HL +A+ P S E ++ + +R H Sbjct: 704 SYVVFIELLKWRDTLARRLDRSPVSLATPAHLLLLAQKRPTSAVEFAAAMRPAPPTLRQH 763 Query: 272 GKTLLALVEKAQTLPE--------DALPQPMLNLMDMPGYRKAFKAIKSLITDVSET 320 L+ L++++ + E +L P++ P F K E Sbjct: 764 MPELIQLIQRSLSDSEAAQRAASCSSLLSPLVAPEASPPPSDFFDEKKRKRRSTEEE 820 >UniRef50_Q09BY7 3'-5' exonuclease, putative n=2 Tax=Cystobacterineae RepID=Q09BY7_STIAU Length = 379 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 83/377 (22%), Positives = 141/377 (37%), Gaps = 11/377 (2%) Query: 8 TDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPL 66 + + +A+D E + +L +Q+ + L D L D S L Sbjct: 3 DASSAQEAARTLATAGELAVDLEADSMHAFRARLCFLQVATPTDIFLFDTLAPGVDASLL 62 Query: 67 KAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYS 126 ++ DP TK+ HA DL+ G + L DT A G P G A + E Sbjct: 63 APLMADPERTKYFHAAQGDLQFL-AEAGIRVRGLFDTHRAATLLGWPK-VGLADIARERL 120 Query: 127 GVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 GV L K ++D+ RPL EY A DV YL + ++ +G L L +C M Sbjct: 121 GVELPKEHQQSDFSLRPLPPEMREYIANDVRYLCELGRQVREACRTAGILEEVLLDCDRM 180 Query: 187 QMRRQEVVAPEDAWRDITNAWQLRTRQL----ACLQLLADWRLRKARERDLAVNFVVREE 242 ++ L QL A L RL A + ++ + ++ Sbjct: 181 CEEAVARPDVGADFKPKLPRSGLSPVQLTLAHAVAHALHTKRLEWAEKANVPMGRMLSNM 240 Query: 243 HLWSVARYMPGSLGEL-DSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMP 301 + +A +P + EL + G+ G +R HG+ LA+V + L +P D Sbjct: 241 AIGDIAVKLPANPKELARAAGVRGGFVREHGEETLAIVRELLELSRKGELKPGREAKDSA 300 Query: 302 G---YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 RK +A+K+ ++ + K++ ++ + L + + + R Sbjct: 301 RDAHRRKREEALKAFRSEKAAARKVTPSVVLPNALLEALATHPPRSVEELSQLPWFGEKR 360 Query: 359 GELMAEALHNLLQEYPQ 375 L L LL + + Sbjct: 361 LGLYGADLIALLAQETK 377 >UniRef50_B5JQC7 3'-5' exonuclease domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQC7_9BACT Length = 370 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 146/372 (39%), Gaps = 15/372 (4%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + + D L LC+ + IALD+E + +L L+QL + L+D D Sbjct: 6 FIYVDKQDELEDLCDHLAKQAEIALDSEADNLHHFETKLCLLQLRFDGTIYLLDVTADLD 65 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 IL + +H DL +F G + L D+ + + G G A+++ Sbjct: 66 LDRFWEILS--GLHLIMHGSDFDLRLFEEFCGFEAKSLFDSMLASQLLGI-KRIGLAALL 122 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 EE GV + K ++DW RPLT + +YAA DV YL + KLM + G Sbjct: 123 EENFGVKIPKDSQKSDWSQRPLTPKMLKYAATDVLYLHELRDKLMARIDELGRGEWLKQR 182 Query: 183 CR-LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 C +++ + ++ I + +L R A + L WR ++ D V+ Sbjct: 183 CDNQIRIAKSGFPRNDENSWRIPRSDRLDERGQAAVYELWHWRQNLSKRLDRPPFKVLGN 242 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD-- 299 + + ++A + E GL R + L+ ++ + LPQ Sbjct: 243 DFIIALAEGVSEGNWEFVFEGLPQGIQRRSRQGLVDALKLGASRDVKTLPQRPPRTERRP 302 Query: 300 --MPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357 IK +S+ ++ L+A+R Q+ QL + +L + W Sbjct: 303 PLSQQELDRQDVIKGYRDKLSKELEMDPTLIATRSQVAQL------GRDPADLSGFLE-W 355 Query: 358 RGELMAEALHNL 369 + E++A L L Sbjct: 356 QKEILAPCLEGL 367 >UniRef50_A9LLI8 RRP6-like protein 3 n=5 Tax=rosids RepID=A9LLI8_ARATH Length = 892 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 105/282 (37%), Gaps = 26/282 (9%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Y + T+ L L E + A+DTE R++ LIQ+ E L+D + + Sbjct: 118 SYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVDTIALH 177 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D S L+ + DP+I K H D+ F + DT +P A Sbjct: 178 DVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQR-SLAY 236 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS------- 173 ++E GV +K R DW RPL+E YA D YLL I L E + Sbjct: 237 LLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSS 296 Query: 174 --GWLPAALDECR-----LMQMRRQEVVAPEDA-------WRDITNAWQLRTRQLAC--- 216 L+ R +Q+ +E + +R + L Sbjct: 297 PDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNAEEL 356 Query: 217 LQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 ++ L WR R D + +V+ ++ + ++ P + E+ Sbjct: 357 VRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 398 >UniRef50_B2UPD3 3'-5' exonuclease n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPD3_AKKM8 Length = 352 Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 141/365 (38%), Gaps = 20/365 (5%) Query: 5 MITTDDALASLCEAVRAFPA--IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 MI+ + L + A PA + LD E Y ++ LIQ D LIDPL I D Sbjct: 1 MISEKEELLEWRKRAAAQPAGRVVLDLEADSLHRYQEKICLIQYADETGSCLIDPLSIED 60 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 P L++ + ++H D+ +F N + LP + DTQ A G +G A++V Sbjct: 61 MGPFYNWLKETEV--WMHGADYDMSLFQNAWETLPAMIWDTQTAARLLGFR-QFGLAALV 117 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E + G+TL KS + DW RPL+ YA DV Y+L + KL G + + Sbjct: 118 EHFHGITLSKSSQKADWARRPLSPTMVTYALNDVNYMLDMADKLTAALRKKGRMGWFEEI 177 Query: 183 CRLMQMRRQEV--VAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 CR R +E +D WR I +L + LA L+ + WR +A+ D V Sbjct: 178 CRHSMERARERHLAGHQDPWR-IQGCGKLNRKGLAALREMWTWRDAEAKTWDKPAFMVCS 236 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP--QPMLNLM 298 L +L E ++ + ++K L E+ P + Sbjct: 237 NADLIQ----WSVALQEQRTVAPPPRFHAHRRSRFMNALQKFYLLDEEDYPCRPRIQRRQ 292 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 + + L + +E + L +R + + K + W+ Sbjct: 293 HSDQFEDNLARLCKLRDEKAEELGMEGSFLITRASLEAIAEDREKGVST------LLNWQ 346 Query: 359 GELMA 363 E + Sbjct: 347 KEALG 351 >UniRef50_A0LFB2 3'-5' exonuclease n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LFB2_SYNFM Length = 295 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 4/281 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 +I L +L + +A+DTE Y+ ++ LIQ+ E +IDPL + D Sbjct: 5 VVIEKPSELDALVRQLSTARHLAVDTESNSFYAYFDRVCLIQISSPERDYIIDPLSLKDL 64 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 S L + +P I K LHA S D+ F L DT I G G + ++E Sbjct: 65 SVLGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDTAIACKLLGY-KQLGLSKILE 123 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + GV+L+K R DW RPL Q +YA D YL+ + L + ++ A + Sbjct: 124 THFGVSLNKRWQRYDWGKRPLVPDQLDYARLDTHYLIALRHMLAADLQSRELWAEACEAF 183 Query: 184 RLMQMRR-QEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 ++ E + I A L + L+ L +R ++AR RD A ++ E Sbjct: 184 EKASEQQVPEKTFHPRGFLQINGARSLDAAGKSILKALYMFREKEARRRDRAPFRIMSNE 243 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIR--FHGKTLLALVEK 281 L +A P S+ E+ + L+ ++ + Sbjct: 244 ALLRLADARPDSVDEISRIKGLPRSFHDPKAASFLIEIIRQ 284 >UniRef50_D0WQH3 Putative ribonuclease D n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQH3_9ACTO Length = 411 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 91/386 (23%), Positives = 146/386 (37%), Gaps = 27/386 (6%) Query: 8 TDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD-WS 64 T+ + A+ A+DTE Y + ++Q+ +G LIDP+GI D Sbjct: 21 TNLDIDDAVSALGAGRGPFAIDTERAMGIRYSGRAYVVQIRREGAGTFLIDPIGIEDRLG 80 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL +L LHA +DL G P + DT++ G + V E Sbjct: 81 PLAELLATD--VWILHAADQDLPCL-RELGFNPPEIFDTEVAGILLGFE-RISLQAEVAE 136 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 G L K S DW RPL YAA DV L+ + +L A+G L +EC Sbjct: 137 VLGYGLAKEHSMADWSERPLAPELRAYAALDVELLIELRERLTAMLRAAGRLEWLHEECE 196 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHL 244 +++R + +P+ + R L L+ L R + A+ERDLA V+ + L Sbjct: 197 EIRLREPKTPSPQPWRKSARRNGMTDRRALGILESLWRSREKLAKERDLAPEKVLPSKVL 256 Query: 245 WSVARYMPGSLGELDSLGLSGSEIRF-HGKTLLALVEKAQTLPEDALPQP---------- 293 +A P S ++ L S +R T + A +P++ LPQ Sbjct: 257 AELASRKPRSHADVARSPLLQSRMRRKDAHTWWDAISSAWAVPKEELPQRVFHESAEPFP 316 Query: 294 --MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 P +K ++S + ++ I E+L L W +P Sbjct: 317 ATRNWERANPDAAARWKVVRSTVLARADDLGIRQEILLKPAYQRALAWDGWD--DPEEIP 374 Query: 352 ELI-----SGWRGELMAEALHNLLQE 372 L+ W+ + + + L + Sbjct: 375 ILLAALGARPWQIDNVGQVLVAAARR 400 >UniRef50_Q3BSC1 Ribonuclease D n=20 Tax=Xanthomonadaceae RepID=Q3BSC1_XANC5 Length = 363 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 114/370 (30%), Positives = 158/370 (42%), Gaps = 13/370 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 I L +A R I LDTEF+R RTY+PQL L+Q+ G+ + LIDPL Sbjct: 3 HWIIHPSELTDRLQAARPSR-IGLDTEFIRERTYWPQLALVQMAIGDEILLIDPLIPGMN 61 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + LK L P I K +H+ SEDL F G LP+PL DTQI AA G G+ +V+ Sbjct: 62 AALKEWLTAPDIVKVMHSASEDLVTFKCACGALPRPLFDTQIAAALAGVGGGMGYQKLVQ 121 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 E +G L K E+R+DW+ RPL+ Q EYAA DV YL I L G L ++ Sbjct: 122 EVTGTLLTKGETRSDWMRRPLSPAQLEYAADDVRYLFAIHDALTRRLAEQGRLEWLAEDA 181 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + A L L L WR +AR+ D ++++ E Sbjct: 182 ERLLATVEHDDGERWPHVSLRAAQFLEPAAQRRLLRLLRWRDLQARQSDRPRSWILDNEL 241 Query: 244 LWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG 302 +AR+ P L L R L V A +P L G Sbjct: 242 ASQLARFPPADLEALLRQFDKFPKAPRK----LANAVWDALNIPLPDEEHAPLAQAATDG 297 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 + K ++ + S + LLASRR + L+ Q + P + WR L+ Sbjct: 298 NKAVLKRLQDAVAQRSRELGLPDGLLASRRHLETLM-------EQRSWPAALGQWRRALL 350 Query: 363 AEALHNLLQE 372 L LL + Sbjct: 351 ESQLMPLLDD 360 >UniRef50_D1I5Y8 Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=3 Tax=rosids RepID=D1I5Y8_VITVI Length = 935 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 67/287 (23%), Positives = 113/287 (39%), Gaps = 28/287 (9%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Y + T+ L L + + A+DTE R++ LIQ+ L+D + + Sbjct: 112 SYVWVETELQLKELADVLSKQRVFAVDTEQHSLRSFLGFTALIQISTQNEDYLVDTIALH 171 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L+ + +PSI K H D+ F L DT +P A Sbjct: 172 DTLDVLQPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTAKACEVLSKPQK-SLAY 230 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS------- 173 ++E Y GV +K R DW RPL+ EYA D YLL I L+ E Sbjct: 231 LLETYCGVATNKLLQREDWRQRPLSVEMLEYAQTDAHYLLYIANCLIAELRQHDSENSCC 290 Query: 174 --GWLPAALDECRL-------MQMRRQEVVAPEDA-----WRDITNAWQLRTR-----QL 214 L L+ R + ++ E+ E A R + + ++ Sbjct: 291 PDDKLRFVLEASRRSNTVCLQLYIKEIEISPGESAASSIISRHLNGQGGISSKACDLQFQ 350 Query: 215 ACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL 261 ++ L WR AR D ++ +V+ ++ + ++A +P + E+ +L Sbjct: 351 DLVRRLCTWRDLMARVHDESLRYVLSDQAIIALADKVPTTQKEICTL 397 >UniRef50_C7MCA5 Ribonuclease D n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCA5_BRAFD Length = 399 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 151/386 (39%), Gaps = 26/386 (6%) Query: 5 MITTDDALASLCEAVRAFP--AIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGIT 61 +I L + CEA + P +A+D E + Y + L+QL ALIDPL T Sbjct: 20 VIDRIQPLLAWCEAAASAPEEPVAVDAERASSYRYSSRAYLVQLRTEAAGTALIDPLAFT 79 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L+++L + LHA +DL G P L DT++ A G G ++ Sbjct: 80 MPATLRSLLAERE--WVLHAAGQDLPSL-AEIGLEPGGLFDTELAARLLGME-RVGLGAV 135 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 VE+ G+ L K S DW RPL E YAA DV L+ + L + A Sbjct: 136 VEDTLGLRLAKEHSAADWSRRPLPEGWLTYAALDVEVLVEVRDVLRERLREACKEDWARQ 195 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVR 240 E + R+ +WR + LR RQLA + + R A DL+ + V++ Sbjct: 196 EFEH-ERVREHGPTRSSSWRGLHGLGGLRTPRQLAAAREMWQRRDEIAAGEDLSPHRVIK 254 Query: 241 EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQP------- 293 + L + A+ P D +++R LP LP+ Sbjct: 255 DRDLVAGAKEAPRGREAFDRA--LPAKLRRK-DMWWQAARTGIELPPAHLPERTERSYPP 311 Query: 294 --MLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 L P + ++ +++ + +E ++ E L + Q + H + ++ + Sbjct: 312 PHKLWSKKYPEVAERYQLVRAATAERAEDLEMPPENLLQPALLRQWVWEHEQAPAESEIA 371 Query: 352 ELI-----SGWRGELMAEALHNLLQE 372 + W+ E A +H L E Sbjct: 372 AQLAELGARPWQVEQSAPVIHRALTE 397 >UniRef50_C0VVQ6 Ribonuclease D n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVQ6_9CORY Length = 386 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 75/383 (19%), Positives = 133/383 (34%), Gaps = 27/383 (7%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGITD- 62 ++ LA + IA+DTE TY + LIQL LID + D Sbjct: 13 LVDNPSQLADCAATLSPGAPIAIDTERASGYTYDDRAYLIQLRQEGIGTFLIDAEALRDD 72 Query: 63 -WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L + + LHA D+ G L DT++ F G A+M Sbjct: 73 LPPVLAPAVN--ACPWVLHAAVSDIPCL-ADVGMTAPTLFDTEVAGRFLGFDK-VNLAAM 128 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 G+ L K + +W RP+ YAA DV L+ + L E G L A Sbjct: 129 TNRILGIDLKKGHAAENWSKRPIPRSWLIYAALDVELLIELADTLTALLEREGKLAWAEA 188 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVRE 241 E + + E W D+ ++ Q+ + L + R A + +A V+ Sbjct: 189 EFQHIIDC--PPHHHEKTWLDVKGIRRMHGPQVQAARALFNKRELIAYRKGIAPGRVLSN 246 Query: 242 EHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDAL---------PQ 292 + L +A P + ++D++ R ++ ++ LP + P Sbjct: 247 KLLSLLAEKYPTTAEDVDTILHH----RSDPSMWADVIRRSLALPREKWTTLPHEDGTPA 302 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPE 352 P A + + I D ++ ++ +L S + + + E Sbjct: 303 KSAWKRLSPEAWDALHNVTAAIADHAQDLQMDPIVLVSPALVRDAVWQRVFDGDSTPVAE 362 Query: 353 LI-----SGWRGELMAEALHNLL 370 ++ W+ + + E + + L Sbjct: 363 ILRDRGARDWQIDQVGEIIEDFL 385 >UniRef50_A9RMT7 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RMT7_PHYPA Length = 824 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 71/341 (20%), Positives = 117/341 (34%), Gaps = 40/341 (11%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TDW 63 + T L +L + ++ I +D E R++ + LIQ+ L+D + + D Sbjct: 68 WVQTRSQLEALVDVLKGEKEIGVDIEHHHVRSFRGFIPLIQISTYSTDYLVDAIALHDDM 127 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 L I +P+I K H D F L DT G+P A +++ Sbjct: 128 HLLHPIFANPAILKIFHGADNDSLWLQRDFHIYIVNLFDTARACDVLGKPQR-SLAYLLQ 186 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS---------- 173 Y GV+ K R+DW RPL YA D YLL I + + Sbjct: 187 LYCGVSTKKIYQRSDWRVRPLPAEMEIYARTDAHYLLYIAQCMRANLVQACNTPSLLNDN 246 Query: 174 GWLPAALDECRLMQMRRQEVVAPEDA--------WRDITNAWQLRTRQ------LACLQL 219 L + + + E D+ + N R +Q Sbjct: 247 QLLLEVVRRSNAVCQQLYEKEGVGDSSSAVVASILGRLYNNSNSAMRGEEDAYLRRLVQK 306 Query: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALV 279 L +WR AR D ++ FV+ + L +VA+ P + + S +S L Sbjct: 307 LVEWRDALARAEDESLRFVMSDAALLAVAKERPLTEESILSTIIS-------TDELSRA- 358 Query: 280 EKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSET 320 E A+P P ++ + ++ D +E Sbjct: 359 ------SETAVPGLQPLPSPSPVVQEHVGLLCDILWDFAED 393 >UniRef50_C0XSM9 Ribonuclease n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XSM9_9CORY Length = 390 Score = 230 bits (586), Expect = 9e-59, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 149/390 (38%), Gaps = 26/390 (6%) Query: 1 MNYQMITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPL 58 MN++++ T A + A+DTE + Y + L+Q+ + L P Sbjct: 1 MNFELVDTPAAFRRAAAQLFHGRGPCAIDTERASSFRYDDRAFLVQVNRRDAGTFLFAPE 60 Query: 59 GITDW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 G D L ++ LHA EDL G P L DT+I A G Sbjct: 61 GHRDALREALAPVIGGTD--WILHAAGEDLPSL-AELGLHPGTLFDTEIAARLAGFERP- 116 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 A+MV E++GVTLD R DW PL + YAA DV YL + L +A+G L Sbjct: 117 NLAAMVGEFTGVTLDNGYGREDWSTIPLPLQWQAYAADDVVYLSALAEGLTEVLDAAGKL 176 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAV 235 AA E + R WRD+ L T R L + L D+R + R D + Sbjct: 177 EAAEQEFEHV---RTRPAPAPKTWRDLKGISSLPTGRSLHLARALWDYRDARGRATDTSP 233 Query: 236 NFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML 295 + ++ + + ++A+ P + EL + + R + A++E+A P Sbjct: 234 HTLLGSKVILNIAKNPPRTPDELGRVRGFPARRRDAIEEWYAVIERACADAPSRWPDAPR 293 Query: 296 ----------NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK 345 P + F + + ++ ++ ++ ELL + ++ + Sbjct: 294 DRDNPPSKSSWQRHHPESWQRFVSAREEVSRHADDIDVAPELLVQPALLRAVVWNGVASE 353 Query: 346 ----PQNNLPELISGWRGELMAEALHNLLQ 371 + W+ + + A+ L+ Sbjct: 354 TGAAARALSAAGARPWQVDAASAAIARGLR 383 >UniRef50_A7HCG7 3'-5' exonuclease n=4 Tax=Anaeromyxobacter RepID=A7HCG7_ANADF Length = 296 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 84/274 (30%), Positives = 127/274 (46%), Gaps = 5/274 (1%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWS 64 ++ +L+ L E VRA P +ALDTE Y ++ L+Q+ ++DPL + D S Sbjct: 12 LVADSSSLSRLVEEVRAEPVVALDTESNSFHVYRERICLLQVSTRAADYIVDPLAV-DPS 70 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 PL +L D LH D+ +G L DT A GR G +++VE Sbjct: 71 PLGEVLCD-GRETVLHGADYDVRCLRREYGWHLPRLFDTMAAARRLGR-QGLGLSALVEA 128 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 + GV L K+ R+DW RPLT Q YAA D YLL + L E + G A E Sbjct: 129 HFGVRLSKTFQRSDWGQRPLTAAQLAYAALDTHYLLALRDMLAGELDTLGASEQARREFE 188 Query: 185 LMQMR-RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + +E V + +R + A +L LA L+ + R +A D V+ E+ Sbjct: 189 RIAAVVARERVFDPEGFRRLRGARELDPAGLAVLRAIYVAREERASGLDRPPFKVLGEDA 248 Query: 244 LWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLL 276 + ++AR +P EL + G++ S +R G +L Sbjct: 249 MIAIARRLPRDADELGRIPGVTPSVMRRLGDEIL 282 >UniRef50_C8NU72 Ribonuclease D n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NU72_9CORY Length = 394 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 77/391 (19%), Positives = 135/391 (34%), Gaps = 27/391 (6%) Query: 1 MNYQMITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPL 58 M+Y+++ T D A + + A+DTE Y + LIQ+ G L P Sbjct: 1 MHYELVHTPDGFARAAKQLAAGHGPFAVDTERASAYRYDDRAFLIQIHRRGAGTFLFQPE 60 Query: 59 GITDW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 G+ + S L + +HA EDL G P L DT + G Sbjct: 61 GLREELTSALAPAVNGED--WIIHAAPEDLPSL-AELGLHPGTLFDTALAGRIAGFEKP- 116 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 A+MV E+ GV L+K R DW L +YAA DV YL + G L Sbjct: 117 NLAAMVAEFCGVELEKGHGREDWSLPTLPREWLDYAALDVIYLPDLAEAQAELLGGLGKL 176 Query: 177 PAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTR-QLACLQLLADWRLRKARERDLAV 235 A E + E AP W + L + A + + + R A RD++ Sbjct: 177 DYAEQEFAHIVDTFAEWTAPTLTWEGLKGVNNLPSALSRAIARAVWEQRNADALRRDISP 236 Query: 236 NFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML 295 + ++ + + ++A+ P S +L ++ + ++ P Sbjct: 237 SHILPSKLIIAIAKEQPRSPADLAAMKGFPARRTGASHKWFRVLRGVYQSDPATWPDKPR 296 Query: 296 ----------NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLK 345 P + ++S I + ++ + AE+L + + + + Sbjct: 297 NNEGTPGKSAWQRHHPESWDYLQTMRSAIAEAADDMDLPAEVLLTPAVLRETAWALSQGT 356 Query: 346 ---PQNNLPELI-----SGWRGELMAEALHN 368 + + L+ W+ A+ Sbjct: 357 VSWDTHAVAGLLAEQGARPWQVANTADLFAA 387 >UniRef50_C5VCE9 Ribonuclease D n=2 Tax=Corynebacterium matruchotii RepID=C5VCE9_9CORY Length = 405 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 147/380 (38%), Gaps = 30/380 (7%) Query: 17 EAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWS--PLKAILRDP 73 + A+DTE V Y+ ++ L+Q+ G LID + + +L D Sbjct: 28 RLAQGTGWCAVDTERVSGFRYHNRVCLLQIRRAGAGTMLIDVESDPQATTDFMGRVLTDT 87 Query: 74 SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKS 133 +HA + DL P L DT++ F G A+MVE Y GV L K+ Sbjct: 88 G--WVVHAATSDLPYL-EQLRLRPAQLFDTELAGRFLGF-HRVNLAAMVEHYLGVRLRKN 143 Query: 134 ESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET-EASGWLPAALDECRLMQMRRQE 192 DW RP+ +YAA DV YLLP+ + E + S +EC + + Sbjct: 144 HGGEDWSRRPIPSEWLDYAALDVEYLLPLADAMRSELTQQSPKDEWVAEECDYLTRVYRG 203 Query: 193 VVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYM 251 +W D+ +LR ++QL + L R + A+ D AV+ ++ ++ L ++A + Sbjct: 204 YSPTPKSWEDLKGVRRLRTSKQLQVARWLWQVREKLAQASDTAVSRLLPDKTLVALATEL 263 Query: 252 PGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML-------------NLM 298 P ++ ++ +R + V+KA + P+P Sbjct: 264 PTTVPKVMKTTGYPPRLRRKARYWANQVDKALRTSRERWPEPFPIPTYRDKPPSRYTWSR 323 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPEL----- 353 P ++ + V+ I E + N+++ +LK + EL Sbjct: 324 YYPESFPTLTMVREELAHVAAQVGIPVENMIQSSDTNEIVWRSQELKEVTDATELLELLR 383 Query: 354 ---ISGWRGELMAEALHNLL 370 + W+ +L ++L Sbjct: 384 RLQVRPWQQKLCLPIFTSIL 403 >UniRef50_UPI000185C37F ribonuclease D n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C37F Length = 433 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 136/356 (38%), Gaps = 24/356 (6%) Query: 4 QMITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGIT 61 ++++ D + E + + +A+DTE Y + L+Q LIDP Sbjct: 23 RVLSDIDDIIDAGEQLAKGHGWLAVDTERASAYRYDDRAFLLQFRRRGAGTFLIDP---E 79 Query: 62 DWSPLKAILRDP--SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 D A+ ++T +HA DL G P +IDT++ G A Sbjct: 80 DGRKAMAVFGSSVNNLTWIIHAAHSDLPCLAA-LGLYPTKVIDTELAGRLLGLE-RVNLA 137 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 ++ E GV L K R DW RPL +YAA DV L+ + L L Sbjct: 138 ALTERLLGVGLAKGHGREDWSTRPLPADWLDYAALDVELLIELAEVLCQALTELDRLEWL 197 Query: 180 LDECRLMQMRRQEVVA---PEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAV 235 EC ++ + +W+ + +LR QL + L R A++RD++ Sbjct: 198 EQECERELAINRKYLDGLHVGHSWQGLKGIGKLRTPEQLHVARALWTERDEIAQQRDVSP 257 Query: 236 NFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPM- 294 V+ L ++A +PG+ EL ++ R L +V +A+ P + P+P Sbjct: 258 THVMGHSVLRTIAEQLPGTQRELTAIRGFPRRRRGAADAWLKVVNEARQEPRSSWPKPQK 317 Query: 295 ----------LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNW 340 P + F+ + I +V + + L + Q +L+ W Sbjct: 318 PSRNEMPHFRRWAEHAPQAAEIFETTRDCIDNVCAQIHLRKDTLITSAQTRELVWW 373 >UniRef50_C7NI77 Ribonuclease D n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NI77_KYTSD Length = 431 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 149/399 (37%), Gaps = 53/399 (13%) Query: 21 AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWSPLKAILRDPSITKFL 79 +A+D E Y L+QL G L+DP+GITD SPL L P L Sbjct: 32 GTGPVAIDAERASGHRYGNDAYLVQLRRQGAGTLLVDPMGITDMSPLAEALDGPE--WVL 89 Query: 80 HAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDW 139 HA ++DL G P+ L DT++ G P G A++VE Y +TL K S DW Sbjct: 90 HAATQDLPCL-ADLGLRPRSLFDTELGGRLVGLP-RVGLAAVVEHYLDLTLAKEHSAVDW 147 Query: 140 LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDA 199 RPL YAA DV L+ + + + E G A E + ++A Sbjct: 148 STRPLPTDWLVYAALDVEVLVEVRDAMEADLERLGRDEWARQEFDALTS-FTAKDHGDEA 206 Query: 200 WRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL 258 WR + ++ R RQ A L+ L R ARERD+ + V+ ++ L ++A ++ Sbjct: 207 WRRTSGTHRIRRPRQAATLRELWLVRDEMARERDVTPSKVMHDDALVALATAPMVDPADM 266 Query: 259 ----------------------DSLGLSGSEIRF-------HGKTLLALVEKAQTLPEDA 289 + G + +R H V +A LPE Sbjct: 267 APVVRYALAARGAKNSRGGRPHRATGAAERRVRRAMATLQGHADQWWGAVVRAAELPEAE 326 Query: 290 LPQPMLNLMDMPGYRKAFKA----------IKSLITDVSETHKISAELLASRRQINQLLN 339 LP L + P + ++ + +++E + + E L + + ++L Sbjct: 327 LPPAKLPSVGPPPAKAWADRDPRAAARLAAARAELGELAEGYGVPVENLLTPSLLREVLW 386 Query: 340 WHWKLK-------PQNNLPELISGWRGELMAEALHNLLQ 371 + + W+ EL + + Sbjct: 387 DTADREHLQAAQVDADLEAGGARPWQRELAVPVIVRAAE 425 >UniRef50_A9U244 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U244_PHYPA Length = 515 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 117/294 (39%), Gaps = 17/294 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 +I+T L + R IA+D E R++ + L+Q+ ++D L + Sbjct: 223 TVISTASELKDMAMKCRLAGEIAVDLENHNYRSFQGFVCLMQVSTRSEDFIVDALALRSH 282 Query: 64 --SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDT-QILAAFCGRPMSWGFAS 120 LK + D ++ K +H D+E FG + DT Q A +G A Sbjct: 283 MGPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMFDTGQQAARVLQLE-GFGLAF 341 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWY---------LLPITAKLMVETE 171 +++ + + DK DW RPL +YA D Y ++ ++ + + Sbjct: 342 LMQRFLKINPDKRYQLADWRIRPLPAEMIKYAREDTHYLLYLYDLLRVVLVSMRSTAGND 401 Query: 172 ASGWLPAALDECRLMQMRRQEV-VAPEDAWRDITN--AWQLRTRQLACLQLLADWRLRKA 228 A + R + ++ + + E ++ + + Q++ L L WR A Sbjct: 402 ADDPVLQVYKRSRDICLKMYKKDILTETSYLSLYGLQDKNFNSEQMSVLAGLYAWRDNLA 461 Query: 229 RERDLAVNFVVREEHLWSVARYMPGSLGELD-SLGLSGSEIRFHGKTLLALVEK 281 R+ D + FV+ + L+ +A MP + L ++ S + + +L ++ + Sbjct: 462 RKLDESTGFVLPNQLLYKLAEEMPDTARTLQIAIRGPHSVVGQYTAEVLEVIRQ 515 >UniRef50_C5X9Z8 Putative uncharacterized protein Sb02g034580 n=1 Tax=Sorghum bicolor RepID=C5X9Z8_SORBI Length = 760 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 66/282 (23%), Positives = 107/282 (37%), Gaps = 23/282 (8%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 Y + T+ L L + A A+DTE R++ L+Q+ LID + + Sbjct: 12 TYNWVDTEAQLEHLARLLGEERAFAVDTEQHSIRSFLGYTALMQISTQNDDYLIDTIALH 71 Query: 62 D-WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D L+ + + SI K H D+ F + DT +P A Sbjct: 72 DVMGILRPVFANSSICKIFHGADNDVLWLQRDFHIYVVNMFDTAKACETLSKPQK-SLAY 130 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS------G 174 ++E Y VT DK+ R DW RPLT EYA D YLL I L E A Sbjct: 131 LLEVYCEVTTDKTMQREDWRLRPLTPEMIEYARTDAHYLLYIANCLASELHAKACDTSSD 190 Query: 175 WLPAALDECR-----LMQMRRQEVVAPEDA-------WRDITNAWQLRTRQLAC---LQL 219 + + MQ+ +E+ P A R++ + + Sbjct: 191 KINFFFEASHRSNMVCMQLYAKEIECPPGASSAASILSRNLQTHGLDSKKSSEVKDLVWK 250 Query: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL 261 WR AR D ++ +V+ ++ + ++A +P E+ ++ Sbjct: 251 FCAWRDLMARMHDESLRYVLSDQAIAALAVSLPKGPTEVFAV 292 >UniRef50_C0W3T7 Possible ribonuclease D n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3T7_9ACTO Length = 431 Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 151/395 (38%), Gaps = 35/395 (8%) Query: 7 TTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDWS 64 + + L+ + + +A+D E Y LIQL +G L+DP+ D S Sbjct: 42 DSPELLSQAADCLAAGHGPVAVDAERASGFRYGQDAYLIQLRREGAGTFLVDPVTAGDMS 101 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 L A L P LHA +DL G P+ L DT++ A GR G ++VEE Sbjct: 102 ALAAALDGPE--WILHAADQDLPCLSA-LGLHPRSLFDTELAARLLGR-ARVGLGAVVEE 157 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 G+ L K + DW RPL YAA DV L + L E E +G A E Sbjct: 158 TLGLRLAKDHAAADWSTRPLPRTWLVYAALDVELLADLRVALGAELEEAGKAEWARQEFD 217 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRT--RQLACLQLLADWRLRKARERDLAVNFVVREE 242 + R A D WR A + R LA L+ + R A++ D + V+ Sbjct: 218 Y-ERTRPPRPAKIDPWRKTPRAGRAMRSARSLAVLREVWTAREELAQQLDRTPSKVLPHS 276 Query: 243 HLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPED------------A 289 + + A P S +L +L S + R + + VEKA LPED Sbjct: 277 AVVAAAVARPTSRRKLAALKEFSSRQARLNQEVWWRAVEKALELPEDQLPAMHAALAPGE 336 Query: 290 LPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN 349 LPQP A ++ + +E ++ ELL + L + + + Sbjct: 337 LPQPRSWARHHSEAAIALDEVRGAVRQRAEQLRVPQELLLAPDTQRHLAWQIGEEEAAGH 396 Query: 350 LPEL-------------ISGWRGELMAEALHNLLQ 371 +P++ W+ E A L + L Sbjct: 397 VPDVSVIAVARRLEELGARPWQVEQTAAQLSDALA 431 >UniRef50_A9WRA0 Ribonuclease D n=5 Tax=Actinomycetales RepID=A9WRA0_RENSM Length = 480 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 95/382 (24%), Positives = 149/382 (39%), Gaps = 22/382 (5%) Query: 5 MITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 +I T + L A+ +D E Y + L+Q+ +G LIDP D Sbjct: 82 IINTAEGLERAARALANGSGPAGVDAERASGFRYGQRAFLVQIRREGAGTWLIDPEPFDD 141 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 + L + LHA S+DL G P L DT++ A G P G A++V Sbjct: 142 LKIIDDALN--GVEWILHAASQDLPCLS-ELGMWPSALFDTELAARIAGLPK-VGLAAVV 197 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E+ G L K S DW RPL E YAA DV L + +L+ EA G L A E Sbjct: 198 EQLLGFGLAKEHSAADWSTRPLPEPWLRYAALDVEVLAELREELIELLEADGKLEWATQE 257 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQLR-TRQLACLQLLADWRLRKARERDLAVNFVVRE 241 + + + D WR + QLR +QLA ++ L R A+ RD+A ++ + Sbjct: 258 FQAI-LAAGPPPPRIDPWRRTSGVHQLRDRKQLAAVRQLWLERDALAQNRDVAPGRLLPD 316 Query: 242 EHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPE--------DALPQ 292 L + AR MP ++ +L G G + L + +A+ E + P Sbjct: 317 SALVAAARAMPDTVPQLLGTPGFHGRAAQREAPRWLRSIAEAKASKELPPLHLPSSSPPP 376 Query: 293 PMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPE 352 P P F ++ + +++E + E L + + ++ +L Sbjct: 377 PRAWADKDPAAAARFATVRPRLFELAEQLNLPVENLLTPDFVRRISWRPPAEISAESLGS 436 Query: 353 LI-----SGWRGELMAEALHNL 369 + W+ EL L Sbjct: 437 ALADLGARPWQIELNTPGLLEA 458 >UniRef50_B2AKX1 Predicted CDS Pa_5_9190 n=1 Tax=Podospora anserina RepID=B2AKX1_PODAN Length = 628 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 108/290 (37%), Gaps = 26/290 (8%) Query: 20 RAFPAIALDT-----EFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--TDWSPLKAILRD 72 + I +DT RTY L L+Q+ E ++D L L + D Sbjct: 20 ESTKPIWVDTLRLIWTHHDFRTYTGLLSLMQISTREKDWIVDTLVPWRHRLEVLNEVFAD 79 Query: 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDK 132 P I K H D+ G L DT + G A +++++ G DK Sbjct: 80 PGIVKVFHGAFMDVVWLQRDLGVYVVGLFDTHHASTVLGYGGG-SLAFLLKKFVGFEADK 138 Query: 133 SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEAS--------GWLPAALDECR 184 DW RPL YA AD YLL + + + A+ + + + + Sbjct: 139 RWQLADWRIRPLPAEMLYYARADTHYLLYVYDMIRNDLAAAAHTVHPDGKPIERVIAKSK 198 Query: 185 LMQMRRQEVVAPED-------AWRD--ITNAWQLRTRQLACLQLLADWRLRKARERDLAV 235 + R E A ++ W + +++ + A + L +WR + ARE D + Sbjct: 199 KTALSRYENPAFDEETGLGDRGWYNYLARSSYVYNKEEFAVFRALWNWRDKTAREEDEST 258 Query: 236 NFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQT 284 FV++E + + R MP L S L ++ L +V++ + Sbjct: 259 GFVMKEHVMAEIVRVMPSDKKALWSLLDGHARNLKGRLDELFGVVQEGRE 308 >UniRef50_Q5PBN9 Ribonuclease D n=5 Tax=Anaplasma RepID=Q5PBN9_ANAMM Length = 401 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 24/379 (6%) Query: 4 QMITTDDALASLCEAVRAFPA--IALDTEFVRTRT-YYPQLGLIQLFDGEHLALIDPLGI 60 ++ + + LA C + +A+DTEFVR+ YYP+L L+Q+ ++D L Sbjct: 5 VLVCSTNELAQFCAQILRDRPESLAIDTEFVRSFNDYYPRLCLLQMAYQGGQCVVDVLDE 64 Query: 61 T-DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP-MSWGF 118 D SPL+ I D I K H +DL+ F LP+P+ DTQ + C S G+ Sbjct: 65 RLDLSPLQEIFDDEGIYKVFHDCRQDLDALSQRFTRLPRPIFDTQTASMLCEYHDNSVGY 124 Query: 119 ASMVEEYSGVTLDK-SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 + +VE++ GV L+K R DW RPL+E + YA DV YL + L+ A L Sbjct: 125 SKLVEQFLGVKLNKLLFKRVDWSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLT 184 Query: 178 AALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNF 237 L+E + V + + +L + + + +WR + AR ++ N Sbjct: 185 WFLEEMENIAEAF--VDNYDSLLEGMDFFPELGESEAIIARSIIEWREKVARLFNVNRNI 242 Query: 238 VVREEHLWSVARYMPGSL-GELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLN 296 V+ + + + S E+ +SGS + +L ++E + + + Sbjct: 243 VMHSKSVLLATKDFLRSRDEEVLYRYVSGSYLDNLPFSLCDILESSAG-------RKLGV 295 Query: 297 LMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISG 356 + + A+ L+ + H IS +L+AS+ ++ +L+N ++ G Sbjct: 296 YKLVDRDKPMLSALLILLNSMCREHGISQKLVASKVELVKLINKIHSN--------IMHG 347 Query: 357 WRGELMAEALHNLLQEYPQ 375 WR E + + + Sbjct: 348 WRYEFFGRKVEKFIAGETR 366 >UniRef50_Q83GB8 Ribonuclease D n=2 Tax=Tropheryma whipplei RepID=Q83GB8_TROWT Length = 391 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 70/378 (18%), Positives = 139/378 (36%), Gaps = 16/378 (4%) Query: 3 YQMITTDDALASLCEAVRAF-PAIALDTEFVRTRTY-YPQLGLIQL-FDGEHLALIDPLG 59 + +I T+ E +R+ A+DTE Y L+QL + D Sbjct: 16 HSLIETNRQYEEALEGLRSGFGPFAIDTERANRFKYDQEFPWLVQLYRRPTGCFIFDTSK 75 Query: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 I + S L ++ + +HA D++ V G L DT+I P + Sbjct: 76 IDNLSKLGDLIGSEEV--VIHAAINDIKSLKRV-GIHITNLFDTEIACRLLNIPK-VNLS 131 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 + E++ V L K S +W ARPL ++ EYA DV +LL ++ L A L A Sbjct: 132 YVTEKFINVKLRKEYSTVNWSARPLNKKYLEYAEGDVKHLLDLSQALKTALRAENKLEIA 191 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 +E + M + + + R A + L R AR +D+ ++ Sbjct: 192 KEEFSHVFMVVKHQSEIDKLDKFCHGLEDDMQR--AVAKNLWKARDEIARSKDIFTPRIL 249 Query: 240 REEHLWSVARYMPGSLGELDSLGL--SGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297 + + +A+ +P +L L +L + + + +A+ ++ Q + Sbjct: 250 SNKAIRILAKQVPENLEILKTLLKKDKRPFRKQYINLWHNAISRARVQCRNSESQIQRKV 309 Query: 298 MDMPGY--RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNN---LPE 352 + ++ K++ +E + E L + + ++ + Sbjct: 310 ITSEKQYPKERMDLAKAISQSCAEKINVPLENLITTHTLKSVIATDISSLCEMGGVLRKI 369 Query: 353 LISGWRGELMAEALHNLL 370 + W+ + + + L + L Sbjct: 370 GLRDWQIKALQQPLFDGL 387 >UniRef50_Q6NGV4 Putative ribonuclease n=1 Tax=Corynebacterium diphtheriae RepID=Q6NGV4_CORDI Length = 407 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 84/389 (21%), Positives = 145/389 (37%), Gaps = 27/389 (6%) Query: 7 TTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITDW-- 63 T+ + + + A+DTE Y + L+Q+ +G LIDP Sbjct: 18 TSRSIYEAAYQLSQGTGPFAIDTERAGAYRYDDRAYLLQIRREGSGTVLIDPEANRRLVT 77 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 S L ++ + +HA + DL G P + DT++ G P ASM+E Sbjct: 78 SVLGKVINN--QPWIIHAAATDLPCLS-ELGFYPSTIFDTELAGRLAGLP-RVNLASMLE 133 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 E VTL K+ DW RPL YAA DV L+P+ + + EA G L EC Sbjct: 134 ERLEVTLKKAHGAEDWSRRPLPHSWLVYAALDVEKLIPLAESMKLLLEAHGKLEWHKQEC 193 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREE 242 + + + +W+DI +L R RQL + L + R +AR ++ +V+ ++ ++ Sbjct: 194 AHLINTSSHGLDTQRSWQDIKGVSRLTRPRQLVVAEALWELRDDEARMKNTSVSRLLPDK 253 Query: 243 HLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML------- 295 L SVA+ P + + R + + P Sbjct: 254 VLISVAQRPPRNSQAALRASEIPKQYRKRIARWMPTINDVLESDPRTWPHTPQFDENQLP 313 Query: 296 ----NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLP 351 P F+ +K+ I + + + AE L + +L + Sbjct: 314 SKYVWEKIHPESLDDFEEVKNSIVEKALLLNLPAENLMQPHSVKELCWQLRDVPRPIAQD 373 Query: 352 ELI--------SGWRGELMAEALHNLLQE 372 ++I W+ + A + + L + Sbjct: 374 DVIECLMRLEARPWQIDNSASVITDTLNK 402 >UniRef50_Q2LWK2 Ribonuclease D n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWK2_SYNAS Length = 339 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 121/282 (42%), Gaps = 5/282 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 ++ + ++ + E + + I+LDTE+ + +L L+Q+ + + DP Sbjct: 55 SWMWVDSEAKVEEAREDLDSSSLISLDTEYDSMHYFREKLCLVQVRASKRTYVFDPFNGI 114 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D L+ DP + K HAG D+ + +G + + DT A G +S+ Sbjct: 115 DLQFLRPYFADPRLLKVTHAGDNDIRILKRDYGFEFRNIFDTHRAAHMLG-SQYLALSSI 173 Query: 122 VEEYSGVTLD--KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +E+Y GV ++ K R+ W ARPL+E Q YA D YL + L + G A Sbjct: 174 IEQYLGVEIEKTKKMQRSKWEARPLSEGQLRYAVQDTAYLADLYRHLNEKLSLKGMQERA 233 Query: 180 LDECRLMQMRR-QEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 + +E R I+ L L+ L WR KAR+ + A+ + Sbjct: 234 RKVFENVAAVSWREKTLDLLGHRRISGYASLTADSKGRLKKLYRWRFHKARQTNRAMFLI 293 Query: 239 VREEHLWSVARYMPGSLGELDSLG-LSGSEIRFHGKTLLALV 279 + + L S++ S+ EL S G LS + +G L+ ++ Sbjct: 294 LPDSALLSLSEGNWQSVEELRSAGILSEGKTDLYGSELMKVL 335 >UniRef50_A5EXN2 Ribonuclease D n=2 Tax=Dichelobacter nodosus RepID=A5EXN2_DICNV Length = 355 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 144/366 (39%), Gaps = 17/366 (4%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG--EHLALIDPL 58 M YQ T L E + + D+EFVR R YYP+L L+Q+ + LID Sbjct: 1 MTYQ---TKWQLTDHLEQLDPERIVVYDSEFVRERHYYPKLSLVQIMQPAWQKAQLIDMQ 57 Query: 59 GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 S + L +HA S+DLE+ LP DTQI + + + Sbjct: 58 SELCCSVWQQ-LAQQRAPVVIHAASQDLELMHLHGQLLPNMFRDTQIGFSLISPHKAISY 116 Query: 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178 V+ Y G+ LDKSE+R+DWLARPLT QC+YAA DV LL L + + + Sbjct: 117 LGFVQHYLGIDLDKSETRSDWLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHW 176 Query: 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 +EC+ + + P ++ ++R + L R A + DL + Sbjct: 177 WQEECQNLLHEQYHHKEPYHWFKLRGAPQKIRKIHQNTAEALVQLRETVAEKYDLPRRKI 236 Query: 239 VREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLM 298 + +E + +A P + L L +E F + + E + + P Sbjct: 237 LSDEKIIEIALAQPQKFDD--CLALLPAEHYFLAEE--NIAEHFEQIRTQTPPAQPRAAR 292 Query: 299 DMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWR 358 R + DV+ I AE LA+ Q+ + L GWR Sbjct: 293 LNKRQRNILTQLMQFTDDVANALNIHAETLATPNQLRSWIL-------NQEKSALNHGWR 345 Query: 359 GELMAE 364 + AE Sbjct: 346 QAIFAE 351 >UniRef50_A8QBU8 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QBU8_MALGO Length = 849 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 112/350 (32%), Gaps = 32/350 (9%) Query: 2 NYQMITTDDALASLCEAVRAFPA--IALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLG 59 ++ + + + + L + + IA+D E R+Y + L+Q+ ++D L Sbjct: 246 DFVWVDSAEKVRQLQKHLEEERVTEIAVDLEHHNQRSYQGIVCLMQISTRWGDWIVDTLV 305 Query: 60 IT---DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 L P LH D+ G L DT A Sbjct: 306 DEVRESAELLNTAFTHPDKVLVLHGADHDILWLQRDLGLYVTNLFDTFQAARALQFGA-L 364 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG-- 174 A ++ Y+ DK DW RPL YA +D LL + L E G Sbjct: 365 SLAFLLLRYTNFEADKRFQTADWRIRPLPREMLFYARSDTHALLYVYDCLRNELLQRGGP 424 Query: 175 -WLPAALDECRLMQMRRQEVVAPEDA------WR--------DITNAWQLRT------RQ 213 + D + + ++ W+ D+ A Q R+ Sbjct: 425 LAVKEVFDRSKPTASKVYAKEPWDERGNSRGGWKSLWIRMGGDLARASQDAPPDAPLGRE 484 Query: 214 LACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGEL-DSLGLSGSEIRFHG 272 ++ L WR + AR+ D + FV+ L +A P +L E S +R Sbjct: 485 ERIVRRLHHWRDQVARKEDESPAFVMPPRVLIQLALRPPLNLSEAKARTPPSLKFVRSRL 544 Query: 273 KTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHK 322 L+ V+ + +L D K + + S T+ E Sbjct: 545 DELVKTVKDEWHAYLSDV--RPESLGDESTVDKLGEPLSSSKTEAEEDLG 592 >UniRef50_Q4UC54 3'-5' exonuclease, putative n=2 Tax=Theileria RepID=Q4UC54_THEAN Length = 790 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 114/272 (41%), Gaps = 22/272 (8%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 ++Y++I + ++ + ++ +++D E T TY + L+QL + +IDP I Sbjct: 475 IDYKLIDNESDFNAMLDKLKNSRILSMDVEHHDTETYRGFICLLQLSTPQENYIIDPFKI 534 Query: 61 -TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + L + DP I K +H D+ F L DT+ A P A Sbjct: 535 FGKMNKLNRLTTDPKILKIMHGACNDVIWLQRDFNIFVVNLFDTREAAIVLNLPEQ-SLA 593 Query: 120 SMVEEYSGVTLDKSESRTDWLA---------RPLTERQCEYAAADVWYLLPITAKLMVET 170 +V++Y + L+K ++W RPL + +YA D YL+P+ L E Sbjct: 594 KLVQKYFNIKLNKRFQISNWSKSYNCLNCGIRPLDDEMLDYACCDSHYLIPLYNTLKDEI 653 Query: 171 --EASGWLP--AALDECRLMQMRRQEVVAPE--DAWRDITNAWQLRTRQL-----ACLQL 219 + G + ++ R +++ PE ++ I+ +++ +L L Sbjct: 654 LSKEDGRVKIIQVMNNGRETCLKQYVDRGPEIYKKFKSISKRHKIKIPELDFVSYNLLLN 713 Query: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYM 251 + +R AR+ D + ++R+ + + + M Sbjct: 714 IIAFRNFLARKLDKSEKLIIRDYQIALLIKRM 745 >UniRef50_A8GWM0 Ribonuclease D n=16 Tax=Proteobacteria RepID=A8GWM0_RICB8 Length = 286 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 73/277 (26%), Positives = 129/277 (46%), Gaps = 3/277 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q+I + L C + +++DTEF R TYY +L +IQ+ +ID + D Sbjct: 2 QIINSQKVLEEFCRELSTKKWLSIDTEFERRYTYYAKLSIIQVKAEGCSIIIDAINNLDL 61 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 + +L D +I K HA ED E+F N+F LP + D Q+ A CG + + Sbjct: 62 NVFNKLLIDNNIIKIFHAPREDFEIFYNLFKTLPSNIFDVQVAANVCGLGSQLSYDDICY 121 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 + + +DK+ +++WL RP+TE YA DV YL I +L + Sbjct: 122 KLFKINIDKTHQKSNWLKRPITEDMLNYAFLDVEYLDKIYKQLNKIILDNNLTNQYQSML 181 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 + + + V PEDAW+ + +++ Q+LA +R KA+ ++ + +E Sbjct: 182 QFLFNIKNYEVKPEDAWKKVKFRIKIKDFNTKI-QMLAAYREEKAQTINIPRKHFISDED 240 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIR--FHGKTLLAL 278 L + +Y+P + + +L L ++ + + L+ L Sbjct: 241 LMKLCKYLPLTEQDFKNLNLKSRHLQKPRYKEELIQL 277 >UniRef50_C8NCR6 Ribonuclease D n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCR6_9GAMM Length = 401 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 156/368 (42%), Gaps = 18/368 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLA-LIDPLGITDW 63 MI T A+ + D+EFVR R+Y P+L L+Q A L DPL Sbjct: 50 MIHTPWQYATTNTTYDPARILCYDSEFVRERSYIPKLALVQTCQPGGTAQLYDPLEGDI- 108 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 P IL P+ +HA ++DLE+ LP + DTQ A C ++ +A++VE Sbjct: 109 -PWAPILHHPAPL-VMHAAAQDLELMQLCGDALPATIRDTQTGFALCSPHLAVSYAALVE 166 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 Y G+ DKS++R+DWLARPL Q +YAA DV L + L+ + + G L +E Sbjct: 167 HYLGIAPDKSQTRSDWLARPLNAAQLDYAADDVGLLARLYPLLVADLQRLGRLAWWAEES 226 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 Q+ RQ+ W + A QLR Q+L + R R A DL ++ + Sbjct: 227 AT-QLARQQQTRDAWHWYRLQGAPQLRHDDKPVAQILVEARERLAAAHDLPRRAILSDRQ 285 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD-MPG 302 + ++A+ P L + L AQ ++ P P Sbjct: 286 IITIAQKRPSVPENLAEYLAPDHLL------WQELPYLAQRFSDNTPPPAPPASPRLSPA 339 Query: 303 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELM 362 R+ ++ + + I D + I ++LA R + + + L++GWR Sbjct: 340 KRQHYEQLCAYIADTAAALNIHPDMLAPTRVLKNYVA------KPDPTSPLLTGWRAAFF 393 Query: 363 AEALHNLL 370 E L LL Sbjct: 394 REPLGKLL 401 >UniRef50_C2CPA1 Ribonuclease D n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CPA1_CORST Length = 414 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 138/401 (34%), Gaps = 38/401 (9%) Query: 4 QMITTDDALASLCEAV-RAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGIT 61 +++ + AS A+ R A+DTE + + + LIQ+ G L P G Sbjct: 14 EVLRSPAEFASATAALSRGTGPFAIDTERASSYRFDDRAFLIQIRRAGAGTFLFAPEGKR 73 Query: 62 DW--SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + L ++ D +HA DL G P L DT++ A Sbjct: 74 SELSAALAPVINDQD--WVVHAAPSDLPSL-AWLGLYPGTLFDTELAARMADFAHP-NLG 129 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +M+ E V L+K +DW A L+ YAA DV LL + L L A Sbjct: 130 AMILELFDVELEKGYGDSDWSAPKLSPNLRAYAALDVELLLELAEALRDILAEEDKLGWA 189 Query: 180 LDECRLMQMRRQEVVAP-EDAWRDITNAWQLRT-RQLACLQLLADWRLRKARERDLAVNF 237 +E M V P E WR + LRT QLA + L R AR D A N Sbjct: 190 YEEFAAMVDDYAGVTEPTERTWRGLKGLSSLRTGEQLAVAKALWTRRESIARSTDTAPNR 249 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPML-- 295 V+ L +AR +P S + + + +V KA+ L P+ Sbjct: 250 VLPHRVLIDIARTLPDSPQQFARIKGIPRKRSGSALQWFDVVNKARALDPQDWPRQQRTI 309 Query: 296 --------NLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNW------- 340 D P + F+ ++ D+ + + EL+ + ++ Sbjct: 310 SQVPSKTIWAKDYPELWEVFQNLREECEDLGDEVAMPWELILKPATLRAVVWAAGCPPKA 369 Query: 341 -----------HWKLKPQNNLPELISGWRGELMAEALHNLL 370 + E + W+ EL+ L L Sbjct: 370 KKPGSVGGMIKGPQDIAPFLRDEGVREWQIELLQPILEEGL 410 >UniRef50_B3E046 Ribonuclease D n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E046_METI4 Length = 324 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 74/322 (22%), Positives = 123/322 (38%), Gaps = 7/322 (2%) Query: 44 IQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDT 103 + L G+HLA++D L D S L IL H DL++ P+ + DT Sbjct: 2 VSLCQGQHLAVVDCLK-DDLSALWDILSRSE--WICHGMDYDLKMLRKAGCPQPRTIFDT 58 Query: 104 QILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPIT 163 I A CG G+A +V + V L K + DW RPL Y A DV YL + Sbjct: 59 HIAAKLCGFEA-VGYARLVSLFFQVKLTKEHQKADWSRRPLPPSLINYTAKDVLYLEKLK 117 Query: 164 AKLMVETEASGWLPAALDECRLMQMR-RQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD 222 L ++ G C+ +Q + + W I +L + L L Sbjct: 118 EILTRLLKSLGRWEWMEQSCKRIQRKIENSFLGSPKEWERIEGVHKLDFLGQSILFELQK 177 Query: 223 WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKA 282 WR A RD +++ E L ++ ++ G + ++ R LL +EK Sbjct: 178 WRKELALLRDTPPFKIIKSEDLVQIS-FISAHGGSIAAIPAVQRLEREVVGDLLKAIEKG 236 Query: 283 QTL-PEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWH 341 + P P + K F+ +K+ ++ I L+ASR ++++ Sbjct: 237 KQNGSWKESPGPKKLFLFDKEAAKRFEVLKNKRDKIASFLGIDPALIASRNLLSEMALHP 296 Query: 342 WKLKPQNNLPELISGWRGELMA 363 + + I W+ +L+ Sbjct: 297 GSGCQKLIDEDKICPWQAQLLG 318 >UniRef50_A7AVN6 Exosome component 10, putative n=1 Tax=Babesia bovis RepID=A7AVN6_BABBO Length = 879 Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 102/268 (38%), Gaps = 22/268 (8%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI-TD 62 +++ T + L S+ ++ +A+D E T++Y + L+Q+ + +IDP I + Sbjct: 317 KLVQTLEELESMITLLKKCSIVAIDVEHHSTQSYRGFVCLVQITGADDDWVIDPFSIFDE 376 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 L + DP I K +H D+ FG L DT A +S+V Sbjct: 377 MWRLNDVTTDPRILKVMHGAESDILWLQRDFGVYVVNLFDTLKAADVLCLSCGHSLSSLV 436 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW------- 175 + G+ LDKS DW RP+ YA AD YLL + + L Sbjct: 437 RHFLGIHLDKSYQLADWRIRPIPRDMLTYATADTHYLLDLYSALKNTALEQDLKYNIPGM 496 Query: 176 -------LPAALDECRLMQMRRQEVV---APEDAWRDITNAWQLRTR----QLACLQLLA 221 + + + + +R+ A++ + Q ++ L + L Sbjct: 497 VGCFDNHIWRIMLASKKVCLRQYRDPVFNEIPRAFQALRKNRQCPSKVDSLSLNMMLNLI 556 Query: 222 DWRLRKARERDLAVNFVVREEHLWSVAR 249 +R AR D + +F+ + VA Sbjct: 557 SFRNYAARVLDESDSFLFPDYAAVIVAM 584 >UniRef50_B8MZK1 Exosome complex exonuclease Rrp6, putative n=2 Tax=Leotiomyceta RepID=B8MZK1_ASPFN Length = 434 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 10/214 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + + E +++ IA+D E +Y + L+Q+ + ++D L Sbjct: 221 TFVDTLEGVKEMLEELKSAKEIAIDLEHHDVHSYQGLVSLMQISTRDKDWVVDTLKPWRE 280 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L + DPSI K H S D+ G + DT A P + Sbjct: 281 ELQMLNEVFADPSILKVFHGSSMDIIWLQRDLGLYVVGMFDTYHAACALNYPKR-SLKFL 339 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE-----ASGWL 176 ++++ DK DW RP+ E +YA +D YLL I L E + + Sbjct: 340 LQKFVNFEADKRYQMADWRIRPIPEGMFDYARSDTHYLLHIFDHLRNELIENSTPENNLI 399 Query: 177 PAALDECRLMQMRRQEVVAPEDA--WRDITNAWQ 208 L++ + ++R E + A ++ + Sbjct: 400 DYVLEKSKDEALQRFERSPYDAAXXYKRMYKDSS 433 >UniRef50_A0EBI7 Chromosome undetermined scaffold_88, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0EBI7_PARTE Length = 676 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 106/309 (34%), Gaps = 26/309 (8%) Query: 5 MITTDDALASLCEAVRAF------PAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL 58 MIT D L L ++ IA+D E +Y LIQL +IDP Sbjct: 194 MITNADHLGELVLKIQQEVDQNGFSEIAVDLEHNHQISYLGITCLIQLSTRSQDYIIDPF 253 Query: 59 GI--TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSW 116 + L I +P I K H D++ FG L DT + M Sbjct: 254 PLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDTFHASKELQL-MQN 312 Query: 117 GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW- 175 F ++ EY + DK+ DW RPL + +YA D YLL I ++ + + Sbjct: 313 SFQFLLSEYCKKSTDKTYQTADWTQRPLPDEMIKYAQIDTHYLLYIYDRMRQDLKKLNKP 372 Query: 176 -----------LPAALDECRLMQMRRQEVV--APEDAWRDI--TNAWQLRTRQLACLQLL 220 L A L + ++ + + + + I ++ + + L Sbjct: 373 NDNISNIPNYYLEAVLKRSKETALKIYKKPLQDQDQSLQTILNKQDRRMEAKSFELMVRL 432 Query: 221 ADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALV 279 + R + D + + L+ + P ++ EL S LG + L + Sbjct: 433 LELREELGIKHDQNPRYFLPNPFLFKIVESKPTTIQELKSQLGGDKNIHEVVKDNLWQFL 492 Query: 280 EKAQTLPED 288 + E Sbjct: 493 KVLLEFDEK 501 >UniRef50_C5KIT4 Ribonuclease D, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KIT4_9ALVE Length = 350 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 26/281 (9%) Query: 34 TRTYYPQLGLIQLFDGEHLALIDPLGIT---DWSPLKAILRDPSITKFLHAGSEDLEVFL 90 ++Y LIQ+ + ++D L I DP I K LH D++ Sbjct: 1 MQSYRGFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQ 60 Query: 91 NVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCE 150 + DT A + ++++ Y G DK+ DW RPL+ER + Sbjct: 61 RDLSAYLCNMFDTGQAARVLELGGGYSLKNLLDFYCGYKADKANQLADWRQRPLSERMKQ 120 Query: 151 YAAADVWYLLPITAKLMVETEASG--------------WLPAALDECRLMQMRRQEVVAP 196 YA DV YLL I ++ + SG + ++ + ++ + Sbjct: 121 YARDDVHYLLYIYDRMRAQLLCSGGGVDDGKVTAYGRKMYKSTINRSCDVALKTYKDADS 180 Query: 197 EDAWRDI----TNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMP 252 + I L L L WR + R+RD+ N ++ + +A P Sbjct: 181 DFMEHAITLSCKTNTPLSLVGRPMLAALMHWRDKLGRQRDVFPNSILTDRLALRIAMDEP 240 Query: 253 GSLGELDSL-----GLSGSEIRFHGKTLLALVEKAQTLPED 288 + +L G ++R +LA+++ A T P+ Sbjct: 241 VTREQLLRALGGGSGGVARQVRDRADEVLAVLQYAATHPKS 281 >UniRef50_B3DSL7 Ribonuclease D n=17 Tax=Bifidobacterium RepID=B3DSL7_BIFLD Length = 433 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 90/413 (21%), Positives = 157/413 (38%), Gaps = 53/413 (12%) Query: 7 TTDDALASLCEAVRAF-PAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT--- 61 +T D +C+A+ ++A D E Y + LIQ +G +AL+DP+ +T Sbjct: 24 STLDGYHRVCDAMAEATGSLAADAERASGFRYGHEDWLIQFKREGAGIALLDPVALTRAG 83 Query: 62 -DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 DW+ + D T LH DL F G P+ L DT+I A G +G A+ Sbjct: 84 ADWNEFNDAVGDA--TWILHDSLMDLPGF-AEIGLKPKALFDTEIAARLLGL-HRFGLAA 139 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 + E Y G+TL K S DW RPL YAA DV L+ + + + +A+G A Sbjct: 140 VTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIELETMMRRDLKAAGKDEWAA 199 Query: 181 DECRL-MQMRRQEVVAPEDAWRDITNAWQLR--TRQLACLQLLADWRLRKARERDLAVNF 237 +E + W I+ QL R LA + L + R R AR+ D+A + Sbjct: 200 EEFSHALVAGLAPRKPHPIPWLRISRITQLSRDPRGLAIAKSLWEERDRLARQYDIAPSL 259 Query: 238 VVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKT--------------------LLA 277 ++ + + A P + + +L +R H T Sbjct: 260 LLADSSIIEAATNKPHNAAQFRALRSLNERVRIHTGTEQDKMFERYAPIQRAVKPKVWKQ 319 Query: 278 LVEKAQTLPEDALPQPML-----------------NLMDMPGYRKAFKAIKSLITDVSET 320 +++A L P P + ++ +I ++E Sbjct: 320 AIDRAIALKPTQWPTMPAPEQDENGVVNAPRSMRLWQQRHPERYDRLQRVRRVINRIAED 379 Query: 321 HKISAELLASRRQINQLLNWHWKLKPQNN---LPELISGWRGELMAEALHNLL 370 + AE++ + + L ++ + + W+ +L+A ++ ++ Sbjct: 380 TRTPAEMIIKPQILRNLCWVEDPVEVDVETFLVEQGARNWQVKLIAPSVSGVI 432 >UniRef50_C4JWD7 Putative uncharacterized protein n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JWD7_UNCRE Length = 635 Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 77/201 (38%), Gaps = 8/201 (3%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI--T 61 + T + + ++ + ++ I +D E T +YY + L+Q+ + ++D L Sbjct: 228 TFVNTMEGVQAMLKELKCAKEIGIDLEHHDTHSYYGLVCLMQISTRDKDWIVDTLLPWRE 287 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 + L + +P I K LH S D+ G L DT AA P + Sbjct: 288 ELQILNEVFANPQIVKVLHGSSMDVIWLQRDLGLYLVGLFDTYHAAAALHYPKK-SLKFL 346 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA-----SGWL 176 ++++ +K DW RPL +YA +D YLL I L E + Sbjct: 347 LDKFVNFQAEKKYQIADWRVRPLLPGMFDYARSDTHYLLYIYDHLRNELIERSTPGENLI 406 Query: 177 PAALDECRLMQMRRQEVVAPE 197 + + ++R E + Sbjct: 407 DYVQENSKEEALQRYERPVYD 427 >UniRef50_C4LIZ8 Ribonuclease D n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIZ8_CORK4 Length = 462 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 84/414 (20%), Positives = 149/414 (35%), Gaps = 51/414 (12%) Query: 5 MITTDDALASLCEAVRA-FPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT- 61 +I+T D L + + +A+DTE Y + L+QL G L L+D Sbjct: 57 LISTVDELKNAARVLANGHGPLAVDTERASAYRYGDRAFLLQLKRAGSGLFLVDAEACRS 116 Query: 62 DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 D PL ++ +T +H+ DL L G P L DT++ G M Sbjct: 117 DMGPLAPVVN--RLTWIIHSARTDLPALL-DMGLTPHRLCDTELGGCIAGL-KKVNLGDM 172 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 V+ G L K +W RPL + +YAA DV LL ++ + + Sbjct: 173 VDGLVGYRLAKEHGHENWSRRPLPDEWLDYAALDVECLLELSTTVAGLLSELDRFAWWAE 232 Query: 182 ECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRL--RKARERDLAVNFVV 239 EC ++ + + L T L R R+AR D + + V+ Sbjct: 233 ECEYIRTSTLADAPSVEPSLRVKGLNNLSTPAQREL-AFTLSRERDRRARAVDRSPHRVL 291 Query: 240 REEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQT---LPEDALPQPM-- 294 L ++AR P + E+ S + ++ ++++ Q + P+P Sbjct: 292 SNSDLIAIARKNPRTFQEMMDAAHFRSM--RNARSWWSIIQGEQDKTTASSSSTPRPHCA 349 Query: 295 -------------------------LNLMDMPGYRKAFKAIKSLITDVSETHKISAELLA 329 N + + I VSE IS E++ Sbjct: 350 TDDDRGPSRHQGRHSDTHYAGGRRFPNSDRGQKAEELYSLCSEAINVVSEQTGISHEVII 409 Query: 330 SRRQINQLLNWHWKLKPQNNLPEL--------ISGWRGELMAEALHNLLQEYPQ 375 + QI +L+ WH+ +PQ + ++ + W+ +++ N L ++ + Sbjct: 410 TP-QIVRLMAWHFSSEPQAHATDIDMFFTRHGVRRWQRRIVSPVCANALGDHNR 462 >UniRef50_A6G563 Ribonuclease D, putative n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G563_9DELT Length = 386 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 84/380 (22%), Positives = 136/380 (35%), Gaps = 18/380 (4%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI- 60 + + TD L +L + +R +ALD+E Y ++ L+QL L L+D L + Sbjct: 6 EHSWVRTDAELTALAQRMRDAAWVALDSESNSMFAYRERVCLLQLNVAGALFLVDTLALA 65 Query: 61 --------TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR 112 + L L PS+ ++H G D+ FG L DTQ A+F G Sbjct: 66 GDSGEPRAEALAALAEPLASPSLRLWIHGGEYDVACLKRDFGIALGGLFDTQQAASFLGW 125 Query: 113 PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 G+A++VE L K+ + DW RP+ + YA DV +L + +L A Sbjct: 126 S-RTGYAAVVEAVCEQKLPKAHKQHDWGRRPIDAKALRYALDDVVHLPRVGRELEARIGA 184 Query: 173 SGWLPAALDECRLMQMRRQEVV--APEDAWRDITNAWQLRTRQLACLQLLADWRLRKARE 230 + + P W + A L +L L + WR K RE Sbjct: 185 ADLDEELAIANASVAAAPAHRSAFDPSRMW-KLKGARDLPAERLPVLAAIYRWREDKGRE 243 Query: 231 RDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQT--LPED 288 D ++ E L +AR P L + L I+ HG+ LLA + P Sbjct: 244 LDHPPGRLIANEPLVHLARRAPRDAAALKRMRLRRGFIQSHGEGLLAAIAAGLEGGDPLA 303 Query: 289 ALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQN 348 +P +K +E ++ +++ R +N L + Sbjct: 304 EVPPKPKRERPPSSQVSRASRLKDWRRAEAEAREVPMQVVLPPRALNWLATHGA---AEL 360 Query: 349 NLPELISGWRGELMAEALHN 368 + R + L Sbjct: 361 EACPDLGPKRIARYGDQLRE 380 >UniRef50_A9V721 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V721_MONBE Length = 471 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 147/362 (40%), Gaps = 33/362 (9%) Query: 29 TEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT--DWSPLKAILRDPSITKFLHAGSEDL 86 TEFV Y P+L ++Q+ LA +D T L +L I LH+G DL Sbjct: 101 TEFVHFPMYRPKLEVLQIGTETTLAAVDCAAYTKAQLKELTRVLAQKEI--ILHSGQTDL 158 Query: 87 EVFLNVFGELPQPLIDTQ---------------ILAAFCGRPMSWGFASMVEEYS-GVTL 130 ++ V + + DTQ + A G + G A +V V + Sbjct: 159 DLLTEVNEAPLERVFDTQLAYLINATLFIRNPQVAANLLGIRNTIGLADLVTHMFPEVKM 218 Query: 131 DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRR 190 DK ++ +DW RPL + Q YA +DV +L+ + +L A G ++ R + R Sbjct: 219 DKGQALSDWRVRPLNDEQLLYAISDVEHLIEMRHRLQDALSARGVEAWFQEDMRTLLTPR 278 Query: 191 QEVVAPEDAWRDITNAWQLR--TRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 A ED W D ++R A L+ L WR + AR R++A VVR++ L S+A Sbjct: 279 -PTPADEDLWLDFRRLNKVRELPTARAILRALVAWREQTARARNVATPIVVRDDVLLSIA 337 Query: 249 RYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAF 307 P + ++ + G+ I+ + +L LV++A LP + + Sbjct: 338 IAQPSTTEQIMTFQGVKMPFIKHNASDILNLVQRAAEEEAPELPPRAIFTNEPVKDDVIV 397 Query: 308 KAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALH 367 ++ + + +S + L + ++ + + GWR EL+ L Sbjct: 398 ALTRAFLASKALQMGMSPDALLTN-DFSRFMVGLPSVLD--------QGWRRELLHAELE 448 Query: 368 NL 369 + Sbjct: 449 QI 450 >UniRef50_C2CWJ0 Ribonuclease III n=3 Tax=Bifidobacteriaceae RepID=C2CWJ0_GARVA Length = 481 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 84/444 (18%), Positives = 150/444 (33%), Gaps = 81/444 (18%) Query: 4 QMITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT 61 ++I T +A C + +A D E Y + LIQ G + L+DP+ + Sbjct: 41 EVIDTLEAYKEYCNLLAAGSGPLAADAERASGFRYGHEDWLIQFKRKGAGIGLLDPIALG 100 Query: 62 ----DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 DW + D +H +DL F G P+ L DT+I A GR +G Sbjct: 101 KLGVDWHEFNEAVGDA--PWIIHDSMQDLPGFF-DIGLRPRALFDTEIAAKLLGR-KRFG 156 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 +S+ E Y G+TL K S DW RPL YAA DV L+ + + E + G L Sbjct: 157 LSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMSGELKKQGKLL 216 Query: 178 AALDECRLMQMR-RQEVVAPEDAWRDITNAWQLRTRQ--LACLQLLADWRLRKARERDLA 234 A E + + Q+ + W I++ L + L + L R A + D+A Sbjct: 217 WANQEFAHLLSKGAQKKSPHPNPWLRISHISVLMHDKVGLMIAKELWQKRDELACQYDIA 276 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKT-------------------- 274 ++ + + + P + E S+ + +R H + Sbjct: 277 PTLLLSDAAIIEAGKRKPSNSREFRSIRILNERVRIHTGSEQDKMFERYAPIQRKIKPNV 336 Query: 275 ----LLALVEKAQ------------------------------------TLPEDALPQPM 294 + + +A+ + Q Sbjct: 337 WKVVIEDAISRAKSGEVAIVSKLDDSSSKYGNYNDSGDSDNSADAGDSADSSDAQESQAA 396 Query: 295 LNLMDM-----PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWH---WKLKP 346 M P + + +K + ++E E++ + I L Sbjct: 397 PRSMKYWRDHHPKRYERLQNVKQSLIKIAEDTHTPTEIIIKPQIIRNLCWQDNIEHINVK 456 Query: 347 QNNLPELISGWRGELMAEALHNLL 370 + + + W+ +L+AE++ + Sbjct: 457 EFLVEQGARTWQSDLIAESVTRAI 480 >UniRef50_UPI0001B4D324 ribonuclease D n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4D324 Length = 430 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 104/234 (44%), Gaps = 8/234 (3%) Query: 5 MITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALIDPLGITD 62 MI + ALA + A +A+D E Y + L+QL +G ALIDP+ D Sbjct: 1 MIADEAALARVIAAFAAGSGPVAVDAERASGYRYGQRAYLVQLRREGAGTALIDPVACPD 60 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMV 122 S L L + LHA ++DL G +P L DT++ G P G +MV Sbjct: 61 LSALGEALS--GVEWVLHAATQDLPCL-REIGMVPTRLFDTELAGRLAGFP-RVGLGAMV 116 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE 182 E G L+K S DW RPL E YAA DV L+ + L E + G L A E Sbjct: 117 EGVLGFVLEKGHSAVDWSTRPLPEPWLRYAALDVELLVDLRDALEKELDRQGKLDWARQE 176 Query: 183 CRLMQMRRQEVVAPEDAWRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAV 235 + +D WR + ++ R RQLA ++ L R R A+ RD++ Sbjct: 177 FDAIAS-APPPEPRKDPWRRTSGMHKVRRRRQLAVVRELWQTRDRIAQRRDVSP 229 >UniRef50_B6AIJ4 Exosome component 10, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIJ4_9CRYT Length = 1029 Score = 183 bits (466), Expect = 7e-45, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 17/188 (9%) Query: 4 QMITTDDALASLCEAVRAFP----------------AIALDTEFVRTRTYYPQLGLIQLF 47 I D L S+ + +A+D E +T+ + LIQ+ Sbjct: 364 IYIDDLDGLNSMIIDINNQLELQYSESSEYSSKDPFVLAIDLEHHSMQTFRGFVCLIQMS 423 Query: 48 DGEHLALIDPLGI-TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL 106 +IDP + + S L + +P I K H D+ F + DT Sbjct: 424 TRTCDYIIDPFPLFEELSRLNELTTNPRILKLFHGSDYDIIWLQRDFSVYVVNMFDTGQA 483 Query: 107 AAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 A P + +++ Y V +K +DW RPL + EYA +D YL I + Sbjct: 484 ARVLNTPGGYSLGNLLNLYCSVEANKQYQLSDWRERPLPQHLIEYARSDTHYLPYIYDIM 543 Query: 167 MVETEASG 174 + G Sbjct: 544 KNQLLLLG 551 Score = 54.9 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 223 WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGL-SGSEIRFHGKTLLALVEK 281 WR AR D++ ++V+++ L + + P + +L + + ++I+ H TLL L+ Sbjct: 675 WRETVARLYDISNSYVLKDGILQRLIQKQPLNWNDLIATFPNNPAQIKRHSDTLLKLILL 734 Query: 282 AQT 284 + Sbjct: 735 VKQ 737 >UniRef50_D2RBB4 3'-5' exonuclease n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBB4_GARVA Length = 476 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 117/277 (42%), Gaps = 13/277 (4%) Query: 4 QMITTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQL-FDGEHLALIDPLGIT 61 ++I T +A C + +A D E Y + LIQ G + L+DP+ +T Sbjct: 17 EVIDTLEAYKDYCSLLEAGSGPLAADAERASGFRYSHEDWLIQFKRKGAGIGLLDPIELT 76 Query: 62 ----DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 DW+ + D + +H +DL F N G P L DT+I A GR +G Sbjct: 77 KLGADWNEFNKAVGD--VPWIIHDSMQDLPGFFN-IGLRPLALFDTEIAAKLLGR-KRFG 132 Query: 118 FASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLP 177 +S+ E Y G+TL K S DW RPL YAA DV L+ + + VE + G L Sbjct: 133 LSSVTEYYLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELEEVMRVELKKQGKLS 192 Query: 178 AALDECRLMQMRRQEVVAP-EDAWRDITNAWQL--RTRQLACLQLLADWRLRKARERDLA 234 A +E + + + + AP W I++ L L + L R ARE D+A Sbjct: 193 WAEEEFKHLLSKGAQKKAPHPRPWLKISHISVLMHDRVGLVIAKALWQKRDALAREYDIA 252 Query: 235 VNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFH 271 ++ + + + P + ++ +R H Sbjct: 253 PTLLLSDAAIIEAGKRKPSNARAFRAIRSLNERVRMH 289 >UniRef50_A4S626 Predicted protein (Fragment) n=3 Tax=Eukaryota RepID=A4S626_OSTLU Length = 176 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 3/170 (1%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 Q++ T DAL L + A+D E R++ L+Q+ E ++D L + Sbjct: 8 QVVETVDALEELAAHLEECKEFAVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLALRSH 67 Query: 64 --SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASM 121 L D K +H D++ FG L DT A P S G A + Sbjct: 68 VRDALGKAFADADKLKVMHGADNDVQWLQKDFGMFVSCLFDTGQAARVLELP-SKGLAYL 126 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 + Y G+ +K DW RPLT+ EYA D +LL + +L Sbjct: 127 LHHYCGIKANKRFQLADWRLRPLTKEMVEYARGDTHHLLYVHDRLKEALR 176 >UniRef50_Q5CS61 RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain n=2 Tax=Cryptosporidium RepID=Q5CS61_CRYPV Length = 957 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 17/184 (9%) Query: 4 QMITTDDALASLCEAV---------------RAFPAI-ALDTEFVRTRTYYPQLGLIQLF 47 I L + + + + P + A+D E ++Y + LIQL Sbjct: 267 TFIKEPGDLRRMIDDILNLMESHYSQSSMNEESSPFLLAIDVEHHSNQSYKGFVSLIQLS 326 Query: 48 DGEHLALIDPLGI-TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL 106 H +IDP + + L + +P I K LH D+ F + DT Sbjct: 327 TRTHDYIIDPFNLFNEIQMLNELTANPKILKVLHGSDYDIIWLQRDFSVYIVNMFDTGQA 386 Query: 107 AAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKL 166 A P + +++ Y + +DK DW RPL+ EYA D YLL I + Sbjct: 387 ARILNTPGGYSLKNLLSIYCSLDIDKRFQLADWRERPLSNELIEYARGDTHYLLYIYDIM 446 Query: 167 MVET 170 Sbjct: 447 KNLL 450 Score = 61.1 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 13/121 (10%) Query: 176 LPAALDECRLMQMRRQEVVAPEDAW-------RDITNAWQLRTRQLACLQLL----ADWR 224 L L R + ++ P D W I+ + A + L+ WR Sbjct: 515 LLTVLHNSRQICLKEY-FEKPLDVWSLCYGVRTKISKSSYKTPIDSAIVTLVSYYLFIWR 573 Query: 225 LRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS-GSEIRFHGKTLLALVEKAQ 283 AR D++ ++V++E + + + P + E+ L + I+ H +L +V + Sbjct: 574 DSIARLLDVSPSYVLKESMIIKICQKQPMNSVEILGLYPNIPVNIKKHSDHILNIVTTVK 633 Query: 284 T 284 Sbjct: 634 N 634 >UniRef50_Q4JVB6 Rnd protein n=2 Tax=Corynebacterium jeikeium RepID=Q4JVB6_CORJK Length = 423 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 86/399 (21%), Positives = 138/399 (34%), Gaps = 48/399 (12%) Query: 7 TTDDALASLCEAVR-AFPAIALDTEFVRTRTYYPQLGLIQLFD-GEHLALIDPLGITDWS 64 T + ++ + IA+DTE Y + LIQL G LIDP + Sbjct: 16 DTPQQIDAVSRVLAAGTGPIAIDTERASAYRYDDRAFLIQLRRHGSGTFLIDPEAEPQAT 75 Query: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124 A + + + LHA DL + G PQ L DTQI G G + M++ Sbjct: 76 RRMAEVVNEA-EWVLHAAHTDLPCLMA-LGWRPQVLHDTQIAGQLLGAE-RIGLSGMLDA 132 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 Y + + K + DW RPLT+ YAA DV +LL + + E +G + EC+ Sbjct: 133 YFDIQVPKDKGNADWSRRPLTQAMLNYAALDVEWLLELLDCCLEELAKTGRTEWYIQECQ 192 Query: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQ-LACLQLLADWRLRKARERDLAVNFVVREEH 243 + + A + W D+ LR L + R AR D++ ++R Sbjct: 193 HVLASASPLSAND--WTDLKGLSSLRRALPRRIAHDLWESRDAMARRGDISPESILRSRD 250 Query: 244 LWSVARYMPGS----LGELDSL------GLSGSEIRFHGKTLLALVEKAQTL-------- 285 L +A L +L+S + R + L + Sbjct: 251 LVDIAGRAERDRVGALQQLNSCLHRSRARMKPRARRHMAEQLSDALMSDTQDIETQQFHP 310 Query: 286 ---PEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHW 342 P +P + P AI + + + +I + + +RR + Q W Sbjct: 311 PHAPSKGIPDYRTWPDEYPVAAAYSDAILTAADNAANILQIRLDTIVTRRNLRQAAWSCW 370 Query: 343 KLKPQNNLPEL-------------------ISGWRGELM 362 K N L + W+ EL+ Sbjct: 371 LAKDTNALDIAEDPIAEWEQLLGETWTDLGLRPWQVELL 409 >UniRef50_D0RPF8 Putative ribonuclease D n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPF8_9RICK Length = 352 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 147/369 (39%), Gaps = 32/369 (8%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-W 63 ++ L + + +DTEF R +TYY +L +I + DG+ + + D L D Sbjct: 2 IVNNQKKLELFKKYFNKKNCLCVDTEFERKKTYYSKLSIITISDGQKVFIFDLLKFPDQI 61 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVE 123 ++ I + K +H G +D+E+FLN +P DTQI + F G + +A++V+ Sbjct: 62 KTIREIFKSKKKIKIIHGGMQDIEIFLNH-NVNIEPFFDTQIASGFLGLDKNISYANLVK 120 Query: 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDEC 183 +Y LDK DWL RPL Q +Y DV YL + + L A +E Sbjct: 121 KYFKKILDKKHQNEDWLKRPLLNSQIKYLERDVKYLKKMYLIQNKLLKKEKKLNFAKEEF 180 Query: 184 RLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEH 243 L+ + + ++ + L + R +++++L N+++++E Sbjct: 181 SLILKKIKNNNGINSKFKKKLGIQLYNNKNFINLIKI---RDDLSKKKNLPKNWILKDEE 237 Query: 244 LWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGY 303 + ++ + + + + K + L++K + + Sbjct: 238 IITIIKN-----KSFHIIKKNKIFSQNQIKDIANLLKKLSKI-----------RVKKENN 281 Query: 304 RKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMA 363 K+++ VS+ + I L+AS+ I + + K WR ++ Sbjct: 282 EIQIKSLEFFRFLVSKKYSIDQNLIASKFDIAEYKSIKKNSK-----------WRNKIFY 330 Query: 364 EALHNLLQE 372 + ++ Sbjct: 331 DLYEKIITG 339 >UniRef50_A9EXG4 Rnd protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EXG4_SORC5 Length = 403 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 15/339 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH----LALIDPLG 59 ++ + LA L E A+A+D E Y P+L +QL E + ++D L Sbjct: 7 VLVEREGELARLIERAGRADALAVDVEANGLFVYRPRLCTVQLAFREGDGIAVGIVDALR 66 Query: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + +PL +L K LH + D + G DT + A G + G Sbjct: 67 VP-VAPLARLLGAAGPPKVLHDLTFDARML-AEAGAPLGGAHDTSVAARMLGCAAT-GLG 123 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +++ V +DK + DW RP+ + + Y A DV +LLP+ A+L + A G Sbjct: 124 ALLLSELDVKVDKQLQQHDWGRRPIEDAELRYLADDVRHLLPLRARLAERSGALGIDEEI 183 Query: 180 LDECRL-MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238 +EC + P A+ I A L + A L+ L R A D+ + Sbjct: 184 EEECAYKLATALGPPRDPRPAYARIKGAQALDPQGRAILRRLVAAREAAAEGADVPSFKI 243 Query: 239 VREEHLWSVARYMPGSLGE-LDSLGLSGSEIRFHGKTLLALVEKAQ---TLPEDA---LP 291 V + L +A+ P S + G + L VE+ + +PED Sbjct: 244 VASDVLLELAQRRPASADDVRAVRGAAAGRAAGCVAAWLRAVEQGRSDGDVPEDERALFQ 303 Query: 292 QPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLAS 330 Q ++ R I + ++ K+ +++ Sbjct: 304 QARPPRKELAARRAVETRIAAWRRAEAKARKVDEQVVLP 342 >UniRef50_B8C5L5 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C5L5_THAPS Length = 181 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 77/179 (43%), Gaps = 12/179 (6%) Query: 4 QMITTDDALASLCEAVRAF------PAIALDTEFVRTRTYYPQLGLIQLF---DGEHLAL 54 I +D + L + IALD E RT+ + LIQL + L Sbjct: 4 IWIGNEDEMTELATRINDGEQSGEIREIALDLEAHSHRTFAGFVCLIQLSIHISSGYDFL 63 Query: 55 IDPLGITDWSP--LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR 112 ID L + P L IL +P+I K +H D+ FG L DT + Sbjct: 64 IDALSLRHVIPTCLGPILANPNILKVMHGADSDIPWLQRDFGCYVVNLFDTGRASRALKF 123 Query: 113 PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 S G A ++ +Y+G+ DK+ +DW RPL + YA AD YLL I KL +E + Sbjct: 124 -QSAGLAFLLRKYAGLDPDKAHQLSDWRRRPLPDDMRTYAVADTRYLLDIYDKLRLELK 181 >UniRef50_Q241P8 3'-5' exonuclease family protein n=2 Tax=Eukaryota RepID=Q241P8_TETTH Length = 722 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 11/209 (5%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 Y +I T + L L + + +DTE +TY L LIQ+ ++ LID LGI Sbjct: 25 YILIDTLNKLQDLIPILLEQTRLGIDTEQSFAKTYEGFLCLIQISTDQNDYLIDVLGINS 84 Query: 63 WSPLKA----ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGF 118 + + I K +AG +D+ F D + A+F + Sbjct: 85 KQGINECLSKVFLCKDIIKIFYAGQQDILWLKRDFDLSVVNYFDVKECASFLKKSDDNSL 144 Query: 119 ASMVEEYSGVTLDKSE----SRTDWLARPLTERQCEYAAADVWYLLPI-TAKLMVETEAS 173 +++ Y LDK + ++W RPL++ Q +YAA D YL+ I L ++ Sbjct: 145 IQLIDRYCNYKLDKQKKKELQVSEWSNRPLSKEQLDYAALDSHYLIKIRYELLCETIQSV 204 Query: 174 G--WLPAALDECRLMQMRRQEVVAPEDAW 200 G +++ + +++ E + + Sbjct: 205 GFKRTIEVINQMQQQTLKKYEKKKFDYQY 233 >UniRef50_Q55641 Ribonuclease D n=50 Tax=Cyanobacteria RepID=Q55641_SYNY3 Length = 217 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 4/178 (2%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH--LALIDPLGITDWSPLKAIL 70 +C+ + A +A+DTE + + +L L+Q+ D E AL G + L ++ Sbjct: 19 EDVCQQLLACKEVAVDTETMGLNPHRDRLCLVQICDPEGNVTALRIAKGQEEAPNLTRLM 78 Query: 71 RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVT 129 DP ITK H D + F P+ T+I + G ++V+E GV Sbjct: 79 EDPGITKIFHFARFDTAQLKHTFDIKTYPIFCTKIASKIARTYTSHHGLKTLVQELVGVE 138 Query: 130 LDKSESRTDW-LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 LDKS +DW A L++ Q YAA DV YL+P+ KL L A + Sbjct: 139 LDKSSQCSDWGNAANLSKAQLAYAANDVRYLIPLRHKLEKMLAREDRLRLAQRCFECL 196 >UniRef50_O67779 DNA polymerase I n=4 Tax=Aquificaceae RepID=DPO1_AQUAE Length = 574 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 14/196 (7%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI 60 M+++ +T ++ L + + P + LDTE ++ L+Q+ D E+ +ID I Sbjct: 1 MDFEYVTGEEGLKKAIKRLENSPYLYLDTETTG-----DRIRLVQIGDEENTYVIDLYEI 55 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 D PL+ ++ + I H DL+ +G P DT I + G Sbjct: 56 QDIEPLRKLINERGI--VGHNLKFDLKYLYR-YGIFPSATFDTMIASYLLGYE-RHSLNH 111 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +V G ++DKS +DW A L++ Q +YAA DV L + K+ Sbjct: 112 IVSNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELD-----A 166 Query: 181 DECRLMQMRRQEVVAP 196 + + R + Sbjct: 167 ERGEELLKTRTAKIFD 182 >UniRef50_Q8LMQ9 Putative nucleolar protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8LMQ9_ORYSJ Length = 523 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 47/319 (14%), Positives = 92/319 (28%), Gaps = 79/319 (24%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + ++ + LA L + +++ A+D E + R++ L+Q+ ++D L + Sbjct: 145 FTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDTLKLRI 204 Query: 63 WSP--LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120 + LK +DP+ K +H D+ F L DT R Sbjct: 205 YIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIYVCNLFDTG---QVQKRSNEICLQL 261 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL 180 +E D YL I + +A Sbjct: 262 YEKELL---------------------------TDTSYL-HIYGLQEHDLDAKQ------ 287 Query: 181 DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240 LA + L WR ARE D + +V+ Sbjct: 288 ---------------------------------LAVVYALHQWRDYIAREVDESTGYVLP 314 Query: 241 EEHLWSVARYMPGSLGELDS-LGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMD 299 + L +A+ MP EL + + + ++ ++ A Sbjct: 315 NKALIEIAKKMPTDTAELKRMVKSKYPFVDENLDQVVGIIWNATESSYAF------ESRA 368 Query: 300 MPGYRKAFKAIKSLITDVS 318 ++ + + + +S Sbjct: 369 EQLKKERLEQLTDRVQTIS 387 >UniRef50_A2EMW6 HRDC domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2EMW6_TRIVA Length = 443 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 111/294 (37%), Gaps = 19/294 (6%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGIT 61 Y+ I + L SL + + + L E R RTY P L+ L+ L +ID + + Sbjct: 159 YKTIDNERDLLSLSQQLLKTNILFLSLEIHRIRTYRPYPCLLTLYSPTYGLFIIDLMKLR 218 Query: 62 -DWSPLKAILRDPSITKFLHAGS-EDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + PLK IL++P K + DL + G P ID + ++ G+ + Sbjct: 219 FNLDPLKEILQNPDYVKVFFDPNIYDL--LVESCGIFISPSIDLSL--SYPGKTIDQCIK 274 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 + EE + DW RPLT+ A V +L + A +P+ Sbjct: 275 ELNEEQESL----QNIVVDWRIRPLTKFMESTAIEGVLHLPHLAAMAENIVLPEQIIPSF 330 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 + +M + I L L+ L WR A D + NF V Sbjct: 331 IPYSFTPEMAEKMYNDI------IAKYGDLEQFSSTILKELISWRDSVAAIEDESPNFFV 384 Query: 240 REEHLWSVARYMPGSLGELDSL--GLSGSEIRFHGKTLLALVEKAQTLPEDALP 291 + +W +A+ +P + EL S + + + +L ++ A+ E P Sbjct: 385 TDNQIWKIAKNLPTTQDELISCFGTVIPPLVSTYRGDILQMIVAAKEKSEGKTP 438 >UniRef50_UPI00006CF2A3 3''''-5'''' exonuclease family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CF2A3 Length = 964 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 7/184 (3%) Query: 6 ITTDDALASLCEAVRAFPAIALDTEFVRT--RTYYPQLGLIQLFDGEHLALIDPLGITD- 62 I +D++ L E + +D E+ + IQ+ +ID + + + Sbjct: 757 IDSDES-RILKEEIEKNSIFGIDLEYYSENKDKNLGFVCTIQISTVNMDFMIDAMALRNQ 815 Query: 63 WSPL--KAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFA 119 + L K++ + + K LH D++ N F L DT + S+ Sbjct: 816 INQLLNKSLFLNKTKIKILHGCENDIKWLKNDFDIDIVNLFDTMFAEMIIKNKQQSYSLK 875 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 ++ ++Y GV LDKS +DW RPL YA D + LL + + + L Sbjct: 876 NLSQDYLGVELDKSYQISDWRIRPLPTPMMNYARVDSFILLRLFPIMKQMLTSKNLLNQM 935 Query: 180 LDEC 183 +C Sbjct: 936 FLKC 939 >UniRef50_Q4UGW4 DNA polymerase i, putative n=2 Tax=Theileria RepID=Q4UGW4_THEAN Length = 1786 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 100/292 (34%), Gaps = 48/292 (16%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGIT 61 + + + L SL + A+ +D E Q+ L+QL +ID + Sbjct: 1200 IIYVDSYEKLESLKPLFKDPKAVGVDIETTGLDHNTNQIRLVQLSVPNQPSVIIDLFKLN 1259 Query: 62 DWSP-----------------LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQ 104 +P LK + + K H G D+ E P+ DT Sbjct: 1260 TNNPESDNVVPGRNELIKCEWLKNLFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIFDTM 1319 Query: 105 ILAAFC--GRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPI 162 + + R +S + E Y + LDK++ +DW L E Q Y+A D + LLP+ Sbjct: 1320 VASKLLVASRYISCKLTHVSERYLNIVLDKTQQYSDWSTLQLFEEQLLYSARDSFVLLPL 1379 Query: 163 TAKLMVETEASGWLPAALDECRLM-----------------------QMRRQEVVAPEDA 199 L + + A E + + +++++ D Sbjct: 1380 YVILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDELKQEHQEISNDL 1439 Query: 200 WRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYM 251 + + ++ Q L+ L ++ + D + ++ + ++ R M Sbjct: 1440 YSQLNHSEINLNSQKQVLEKL-----QELKIMDRSKKKIISDTSESTLIRNM 1486 >UniRef50_B7G899 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G899_PHATR Length = 311 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 71/197 (36%), Gaps = 29/197 (14%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE------------- 50 I T D L E + IALD E R++ + L+QL + Sbjct: 116 TWIDTVDEWRRLGERLAHVTEIALDLEAHSYRSFAGMVCLLQLSFRDHHYHDKDDHDTPN 175 Query: 51 ------------HLALID--PLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGEL 96 H LID L L +L +P + K LH D+ FG Sbjct: 176 DNDDTNDNSPTVHNFLIDTIVLKPYLNEVLLPVLTNPDVVKVLHGADSDIAWLQRDFGLY 235 Query: 97 PQPLIDTQILAAFCGRPMSWGFASMVEEYS-GVTLDKSESRTDWLARPLTERQCEYAAAD 155 L DT A P +A +++ Y G+ DKS DW RPL E +YA D Sbjct: 236 IVNLFDTMRAARALKFP-RASYAYVLQHYVDGLHADKSAQLADWRVRPLPEALQQYAIQD 294 Query: 156 VWYLLPITAKLMVETEA 172 YLL I ++ + Sbjct: 295 TAYLLDIYDRMRYDLSQ 311 >UniRef50_Q97HU8 Ribonuclease D n=1 Tax=Clostridium acetobutylicum RepID=Q97HU8_CLOAB Length = 205 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 3/170 (1%) Query: 19 VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKF 78 + IA+DTE +L LIQ+ E + LI ++ L IL+ I K Sbjct: 20 LNNCKYIAIDTETTGLDPLKDKLCLIQICAKEKIFLIK-YNNSNQKNLIGILQCSKIIKI 78 Query: 79 LHAGSEDLEVFLNVFGEL-PQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKSESR 136 H + DL + ++ T+I A G + ++ +Y + +DK + Sbjct: 79 FHHANFDLRFLMKNLKIYNINNVVCTKIAAKLLNGIEIENSLKKLLRKYLNINIDKKLQK 138 Query: 137 TDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 ++W A LT+ Q +YA DV YL + L E + A + + + Sbjct: 139 SNWSAENLTKEQIQYATYDVIYLEKLWRALKAELIKANLYSLAEECFKYL 188 >UniRef50_Q31QF9 3'-5' exonuclease n=3 Tax=Synechococcus RepID=Q31QF9_SYNE7 Length = 211 Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 7/190 (3%) Query: 2 NYQMITTDDAL-ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHL--ALIDPL 58 ++ + + L L R PAIA+DTE + + +L L+QL D + + Sbjct: 7 DFHLC--EQDLTDELLAQYRQSPAIAIDTEAMGLNFHRDRLCLVQLCDSAGITTCVRIAQ 64 Query: 59 GITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWG 117 G T L+A+ DP ITK H D+ + G QP+ T+I + G Sbjct: 65 GQTVAPNLQALCEDPQITKVFHFARFDITALKHGLGIAVQPIFCTKIASKLARTYSSQHG 124 Query: 118 FASMVEEYSGVTLDKSESRTDW-LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWL 176 S+++E GV LDK+ +DW A L+ Q YA DV YLL AKL + G Sbjct: 125 LKSLLQELVGVELDKTAQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREGRW 184 Query: 177 PAALDECRLM 186 A D + Sbjct: 185 QLAQDCFACL 194 >UniRef50_UPI0001C360F5 hypothetical protein ChatD1_13164 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C360F5 Length = 626 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 14/231 (6%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLG 59 + +++I+ L V+ P +A+DTE + +L LIQ+ + +ID Sbjct: 48 VEFRIISQPSDLTPYFHTVKEAPLLAIDTETTGLDPHSDRLRLIQISAPGIPVLVIDCAA 107 Query: 60 --ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC---GRPM 114 ++ LK +L PS K H DL+ + G P+ DT + A G P+ Sbjct: 108 FLPDGFACLKELLNTPS-EKIFHNARFDLQFLM-GIGIDCFPVFDTMLAAQLLRPCGGPL 165 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174 G A + + Y G+ LDK+E W + LT Q YAA D W LL + + G Sbjct: 166 KAGLAVVADHYLGIKLDKTEQTGSWDSASLTGSQLAYAALDAWILLKLYDVMNPLLARHG 225 Query: 175 WLPAALDECRLMQMRRQEVVA----PEDAWRDITNAWQLRTRQLACLQLLA 221 A E + + + W ++ + + A L+ L Sbjct: 226 LGRTASIEFACVSAIARTEYDGINLDLEKWDELRR--KTEKQYDAALETLY 274 >UniRef50_A2EJK5 HRDC domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2EJK5_TRIVA Length = 442 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 57/283 (20%), Positives = 105/283 (37%), Gaps = 18/283 (6%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLGI 60 +YQ I ++ L + +++ + + E R RTY P LI L+ + +ID L + Sbjct: 156 SYQFIDKEEDLKRVIFKLKSMTTLFISIEIHRVRTYIPFPCLIVLYSPYVGIFIIDLLKL 215 Query: 61 TDWS-PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFA 119 + L +L + I K E ++ G P +D ++ Sbjct: 216 RCCTGILSELLYNKEIIKIFFD-KELFKIMHESLGIYVYPYVDLSLVN-----------T 263 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 +E D DW RP T+ A V L IT K ++ + Sbjct: 264 QSLEHIFKQEFD-GLCVVDWRIRPFTDELINIAVRRVNVLPKITIKSKIDLNIINKMN-V 321 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 ++ M + + +A E + L + L L+ L WR KA D + NF+ Sbjct: 322 HEKEEFMHQKFTKEMARELVVHLCSKFGNLNSNGLKILEELLLWRDEKAYLEDESPNFIA 381 Query: 240 REEHLWSVARYMPGSLGELDSLGLSG--SEIRFHGKTLLALVE 280 ++ +W ++ P S EL S ++ ++ +++ Sbjct: 382 LDKEMWILSYIQPMSSEELISCLGENISPYLKEDINGIVGIIK 424 >UniRef50_A0L4G0 3'-5' exonuclease n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4G0_MAGSM Length = 213 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 3/185 (1%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 + I D + P +A+DTE + +L ++Q+ D + + Sbjct: 9 HTFIDDLDEAQ--FQRYMKSPFLAVDTETMGLDINRDRLCVVQMCDVTGEVSVVQIRNYQ 66 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASM 121 LKA++ P + K H DL +P+ T+I + S G + Sbjct: 67 APRLKALMEAPEVEKIFHFARFDLATMKRWLDIEIKPVFCTKIASKLVRTYTGSHGLKDV 126 Query: 122 VEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALD 181 +E GV +DK + +DW A LT Q +YAA+DV +L+ I A+L+ G L A + Sbjct: 127 SQELLGVVMDKQQQSSDWGAEQLTPEQLQYAASDVIHLVEIRARLVEMLAREGRLQLADE 186 Query: 182 ECRLM 186 R + Sbjct: 187 IMRFL 191 >UniRef50_B7FYJ7 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FYJ7_PHATR Length = 700 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 71/204 (34%), Gaps = 18/204 (8%) Query: 2 NYQMITTDDALASLCEAVRAFPAIA--LDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPL 58 + ++ T + + + P +A D E Y L+QL +IDPL Sbjct: 233 EWTLVDTPSKMRACISELSQSPPLALAFDVESYNKSKYTQLTCLLQLSTDHGMAYVIDPL 292 Query: 59 GITDWSP---LKAILRDPSITKFLHAGSE-DLEVFLNVFGELPQPLIDTQILAAFCGRPM 114 + L I DP I K H+ D+ FG DT A Sbjct: 293 APGVFEEVGGLAPIFADPDIVKVGHSIGGLDVRSLHRDFGIFVINAFDTYEAAKVLCLE- 351 Query: 115 SWGFASMVEEY------SGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMV 168 S G A++ E Y +L DW ARPLT +Y DV +L+ + ++ Sbjct: 352 SHGLAAVCEHYGMKYTDLYKSLKNEYQTCDWRARPLTGPMIQYGRFDVHFLIELRMLMIR 411 Query: 169 ETEASGWLP----AALDECRLMQM 188 + + L E R++ Sbjct: 412 DLTKTYLFEIKPAEELHESRMVAD 435 >UniRef50_Q0BUA3 Ribonuclease D n=208 Tax=Bacteria RepID=Q0BUA3_GRABC Length = 259 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 8/187 (4%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGIT------DWSP 65 L ++ P IA+DTE + + +L LIQ+ G+ H L+ + D Sbjct: 59 HDLPPSLDIGPIIAIDTETMGLNHHRDRLCLIQISAGDGHAHLVQIVPERLGGKGADCPN 118 Query: 66 LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEE 124 LK +L +P K +H D+ + N G + T+I A G + + Sbjct: 119 LKRLLSNPGCVKLMHYARFDVGILQNALGIAMSNVKCTKIAAKLVRTFTDRHGLKDLCRD 178 Query: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184 GV + K + +DW A LT Q YAA+DV YL + +L L A Sbjct: 179 LLGVEISKQQQSSDWGAPELTPEQMAYAASDVLYLHALWNRLEGLLIREDRLALAEACFA 238 Query: 185 LMQMRRQ 191 + R + Sbjct: 239 FLPARAR 245 >UniRef50_Q23PU6 3'-5' exonuclease family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23PU6_TETTH Length = 634 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 93/266 (34%), Gaps = 13/266 (4%) Query: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-W 63 I TD + E +R I D F R++Y + +++ + +ID L + + Sbjct: 94 YIKTDQEFNRMLELLRNAGVICWDVHFNTYRSFYGFVCFLEISTIDQDYIIDCLSLRNEI 153 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGEL-PQPLIDTQILAAFCGRPMSWGFASMV 122 LK I D I K E + FG L ID + P + + Sbjct: 154 HRLKEIFLDKQIVKITLDLQEKINWLYRDFGILNIVNSIDLSLYLKELNLPSIISY--LC 211 Query: 123 EEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET--EASGWLPAAL 180 K D+ RPL+ + Y A ++ L I + L L Sbjct: 212 GTLLNYPFQKILQNFDYRKRPLSLNEINYLRAFSYFPLRILSILTNNILSIEKSKLEELF 271 Query: 181 DECR---LMQMRRQEVVAPEDAWRDITNAW----QLRTRQLACLQLLADWRLRKARERDL 233 ++ + + +++ E + E+ + +Q L+ + WR+++A+ D Sbjct: 272 NKSQLASCLSLKQLENLLQENLIEKHFEMFCIDRNYNEQQQYFLRKILKWRIQRAKLEDE 331 Query: 234 AVNFVVREEHLWSVARYMPGSLGELD 259 +V ++ + P S ++ Sbjct: 332 SVEYIFPACIIEKFISVYPTSSQQVL 357 >UniRef50_B8FYE5 DNA-directed DNA polymerase n=2 Tax=Desulfitobacterium hafniense RepID=B8FYE5_DESHD Length = 583 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 95/259 (36%), Gaps = 21/259 (8%) Query: 1 MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLG 59 M+ + I L E + A IA+DTE + QL LIQL + + +ID Sbjct: 6 MDIKRILHPADLVPYMEKLTAAKVIAVDTETTGLDPHTCQLRLIQLAAEDLPVLVIDCFS 65 Query: 60 -ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC---GRPMS 115 + + L + S K DL+ + P L DT + + G P+ Sbjct: 66 FLPEGRELINAILSTSGVKVFQNAKFDLQFLMA-LDIFPPTLFDTMLASQLLRGSGGPVQ 124 Query: 116 WGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGW 175 ++ + Y LDK E ++W LTE Q YAA D LL + ++ + + Sbjct: 125 SNLKALAQHYLNEDLDKEEQTSNW-QGELTESQILYAARDAEILLRLRKVMIPQILENHL 183 Query: 176 LPAALDECRLM----QMRRQEVVAPEDAWRDITNAWQLRTRQ---------LACLQLLAD 222 A E R + + + + W+++ + + L ++ Sbjct: 184 TQIAEIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVERPLMQMSL 243 Query: 223 WRLRKARERD-LAVNFVVR 240 W A ++ + FV+ Sbjct: 244 WGEDVAINQNFESQQFVLN 262 >UniRef50_D0LTA5 3'-5' exonuclease n=2 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTA5_HALO1 Length = 925 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 7/170 (4%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDW 63 + + AL C A+ P + LD E L L+QL E+ +ID + D Sbjct: 757 RYVDQQAALEQACAALLGEPRVGLDVETTLFDR---ALCLVQLAAPEYTVVIDARAVDDL 813 Query: 64 SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC---GRPMSWGFAS 120 P+ +L ++ K +H + VF G + + DT ++ R G + Sbjct: 814 GPVSELLASRAVVKIIHNAQFERSVF-RKLGMDIENVFDTLKVSRRLRGRKREGGHGLGA 872 Query: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 + G LDK E R+DW RPLT+RQ +YAA D LL + + E Sbjct: 873 VCARELGRELDKHEQRSDWTLRPLTQRQLDYAALDAEVLLVLHERFTREL 922 >UniRef50_C1XW54 DNA polymerase I n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XW54_9DEIN Length = 682 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 64/371 (17%), Positives = 112/371 (30%), Gaps = 52/371 (14%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD- 62 Q+IT L +L + A P + LD E + + L+ L L+D + Sbjct: 129 QLITRPSDLEALPPRLMAAPVLGLDLETTGLDPHQDRPRLLSLSTERDTYLVDLFALPHA 188 Query: 63 WSPLKAILRDP-SITKFLHAGSEDLEVFLNVFGELPQP--LIDTQILAAFCGRPMSWGFA 119 L+ + H DL L G P+ L T + Sbjct: 189 LEALRPLFEAKTGPVLVGHNLKFDLAFLLKA-GLWPEGRRLWCTGLAHQVIHARSRMP-- 245 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 ++ + G LDK +DW P++E Q YAA D LLP+ + E+ G Sbjct: 246 ALADLVPG--LDKRLQTSDWSG-PISEAQLAYAARDTQVLLPLYHQQQEESRRLGIGKVL 302 Query: 180 LDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVV 239 E R + P AW + R LA + + D N+ Sbjct: 303 EIESRAL---------PAVAWMGLMGVPFNPERWLATAKEAELSAQEALKRLDWRTNWDS 353 Query: 240 REEHLWSVARYMPG----------------SLGELDSLGLSGSEIRFHGKTLLALVEKAQ 283 ++ L ++ R ++ L + +G L + Sbjct: 354 PKQVLEALRRAGIELSDTREETLSRHREHPTVAALLAYREHRKRQSTYGAAWLENLHPLT 413 Query: 284 TLPEDALPQPMLNL-------------MDMPGYRKAFKAIKSLITDVSE----THKISAE 326 + Q P YR F+A + ++ +++A+ Sbjct: 414 GRIHPSWQQIGAESGRMSCSRPNLQQVPREPAYRACFQAPGGRVLIKADYSQIELRLAAQ 473 Query: 327 LLASRRQINQL 337 + +R + Sbjct: 474 IAGEKRMLEAF 484 >UniRef50_A0CQJ2 Chromosome undetermined scaffold_24, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CQJ2_PARTE Length = 733 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 90/283 (31%), Gaps = 41/283 (14%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 ++ I+ ++ L ++ I +D E + Q+ ++Q+ D E + +ID + I Sbjct: 41 FKYISNENELNQF--QLKG-SIIGVDIEHTNDIGFDGQISIVQIKDDEDVYIIDVIEIGV 97 Query: 63 -----WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWG 117 + K I D I K +AGS D+ F Q D + +A C Sbjct: 98 DNQKLINVFKQIFEDDKIIKVFYAGSTDVLWLKRDFQITIQNFFDIKEVADECKLSK-IS 156 Query: 118 FASMVEEYSGVTLDKSE----SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA- 172 + ++Y + KS +DW RPLT+ Q YAA D +YL + L+ E Sbjct: 157 LIFLWKQYCDHQVSKSYKTNMQTSDWAERPLTQEQLIYAAYDCYYLPYLRYVLLEELSKA 216 Query: 173 ---------------------------SGWLPAALDECRLMQMRRQEVVAPEDAWRDITN 205 E L+ E + + Sbjct: 217 DIKKQSKIQKKFEKAILKDYKKPILSNQDLAKIIDKEYNLLMQIVAENDDKSPIYSFLKT 276 Query: 206 AWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVA 248 + R A + V + E + +A Sbjct: 277 QPVAVQLVKFIALEIMKIRQDYAIHHNDPVECLEENEQVILIA 319 >UniRef50_A7AQX3 DNA polymerase I, putative n=1 Tax=Babesia bovis RepID=A7AQX3_BABBO Length = 1613 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 73/194 (37%), Gaps = 10/194 (5%) Query: 4 QMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGITD 62 + ++L SL LD E ++ L+Q+ + +ID + Sbjct: 1038 IFVNNPESLESLAPLFEHTKLCTLDIETTGLNHREDRIRLLQISTPDQPSVVIDVFKVPV 1097 Query: 63 WSP-----LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG---RPM 114 + L +L ++ K LH G D+ + + P+ DT I A Sbjct: 1098 PTLKECTWLVKLLGSQAV-KVLHNGKFDINFLSHNGFNVKGPIFDTMIAAKLLSATRFNW 1156 Query: 115 SWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174 S + E Y + LDKS+ +DW PL E Q YA+ D LLP+ L + +A Sbjct: 1157 SCKLGHVAERYLNIVLDKSQQFSDWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLKAER 1216 Query: 175 WLPAALDECRLMQM 188 A E + + Sbjct: 1217 LDMIADIENKCVLA 1230 >UniRef50_Q16D56 3'-5' exonuclease family protein, putative n=10 Tax=Alphaproteobacteria RepID=Q16D56_ROSDO Length = 248 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 3/182 (1%) Query: 13 ASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLG-ITDWSPLKAIL 70 L + + P +A+D E + + +L ++QL G+ LI T+ L +L Sbjct: 52 NDLPDGLDLGPMVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTEAPNLCKLL 111 Query: 71 RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVT 129 DP + K H G D+ LN FG P+ T+I + G A +++E + Sbjct: 112 EDPKVLKLFHFGRFDIAAMLNAFGATAAPVYCTKIASRLVRTYTDRHGLAKLLQELLAID 171 Query: 130 LDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 + K + +DW A LT+ Q EYAA+DV YL + L E G + A + MR Sbjct: 172 ISKQQQSSDWGAETLTDAQIEYAASDVLYLHQLREALNKMLEREGRMETAQACFDFLPMR 231 Query: 190 RQ 191 + Sbjct: 232 AK 233 >UniRef50_Q69RB5 Polymyositis/scleroderma autoantigen 2-like n=3 Tax=Oryza sativa RepID=Q69RB5_ORYSJ Length = 1031 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 74/227 (32%), Gaps = 33/227 (14%) Query: 70 LRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVT 129 L I H D+ F + DT +P A ++E Y GVT Sbjct: 295 LTAWMIYMIFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQK-SLAYLLELYCGVT 353 Query: 130 LDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMR 189 DK+ R DW RPLT +YA D YLL I L E A D + Sbjct: 354 TDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK-----TYDASDSPNDK 408 Query: 190 RQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVAR 249 + + + WR AR D ++ +V+ ++ + S+A Sbjct: 409 INFFFEAS------------HRSNMDLVWKICAWRDLMARMHDESLRYVLSDQAIASLAV 456 Query: 250 YMPGSLGELD---------------SLGLSGSEIRFHGKTLLALVEK 281 +P E+ SL + H + L L+E Sbjct: 457 SVPRGPTEVCSAILETETSNSTVYPSLPPPSPIVVAHAEELRYLIED 503 Score = 90.7 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61 +Y + TD L L + A A+DTE R++ L+Q+ + LID + + Sbjct: 144 SYNWVETDAQLEDLARLLDDEKAFAVDTEQHSLRSFLGYTALMQISTQKADYLIDTIALH 203 Query: 62 D-WSPLKAILRDPSI 75 D S L+ + +PSI Sbjct: 204 DVMSILRPVFANPSI 218 >UniRef50_Q04QR5 Ribonuclease D-related n=6 Tax=Leptospira RepID=Q04QR5_LEPBJ Length = 212 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 3/174 (1%) Query: 16 CEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLGITDWSPL-KAILRDP 73 E +A +A+D E + +L ++Q+ D +++L+ L +PL K++ +P Sbjct: 22 LEEYKADDRLAVDCEMMGLNPRRDRLCVVQICDSSNNVSLVQILPDQKEAPLLKSLFENP 81 Query: 74 SITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLDK 132 I K H D G + + T+I + G +++E+ +DK Sbjct: 82 EIVKIFHFARMDSLFLRYRLGISLENVFCTKIASKLARTYTDKHGLKDLIKEFYDEVIDK 141 Query: 133 SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 +DW + LT+ Q EYA+ DV YL+ + KL G A + R + Sbjct: 142 KNQSSDWGKKILTKDQIEYASGDVKYLISLEQKLTEILVREGRDSLAREAFRCL 195 >UniRef50_B7QA32 Putative uncharacterized protein (Fragment) n=1 Tax=Ixodes scapularis RepID=B7QA32_IXOSC Length = 853 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 96/282 (34%), Gaps = 46/282 (16%) Query: 15 LCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLG---ITDWSPLKAIL 70 + P +ALD E V L L+QL + L D + D LK IL Sbjct: 541 ARAMLSQCPVLALDAEGVNLGP-RGPLTLLQLATAAGEVFLFDVQSTPQLFDEGKLKDIL 599 Query: 71 RDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP---------MSWGFASM 121 +I K +H D FG Q + DTQ A + + ++ Sbjct: 600 ESQTIVKVVHDCRNDSAALFYQFGIRLQNVFDTQAAHATLQQQDQGKPVHKVKNVSLGTL 659 Query: 122 VEEYSGVTLDKSES-----RTD---WLARPLTERQCEYAAADVWYLLP-ITAKLMVETEA 172 Y G + E R D W RPL+E +AA DV+ LLP + L + Sbjct: 660 CGLYGGPPNPRREQVKSLYRRDQKFWSRRPLSEDMVFHAAFDVFCLLPAVHDALRGAIKP 719 Query: 173 S--GWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARE 230 L A +E + ++PE+ + R +Q + D R R Sbjct: 720 EFGPLLHALCEE------QVLSHISPEE----VKG----RKKQRKVDHEVDDLR----RR 761 Query: 231 RD--LAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRF 270 D A V+ + + RYM + E + + R Sbjct: 762 LDSTSARQVVLSNREIRLL-RYMNLTDEECSRIDGNPKVARK 802 >UniRef50_B1X218 DNA polymerase I n=3 Tax=Cyanothece RepID=B1X218_CYAA5 Length = 662 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 49/296 (16%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGI 60 +Y++I+ D++L + + + + LD E + ++ LIQ+ + LI+ GI Sbjct: 46 DYEIISDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLIQIAAPNRPVILIEFRGI 105 Query: 61 TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQ--PLIDTQILAAFC-------- 110 T+ L+ + P I K H + +++ G P IDT +++ Sbjct: 106 TNKETLRRFIEHPKIPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTL 165 Query: 111 ------------------------------GRPMSWGFASMVEEYSGVTLDKSESRTDWL 140 P S+ +V G +LDKS +DW Sbjct: 166 EEDAKTGVLPIPDLTRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWG 225 Query: 141 ARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDE----CRLMQMRRQEVVAP 196 PLT+ Q +YAA D +LP+ L + + A E R+ QM + Sbjct: 226 K-PLTQEQLQYAANDAAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLD 284 Query: 197 EDAWRDITNAWQLRTRQ---LACLQLLADWRLRKARERDLAVNFVVREEHLWSVAR 249 D W ++ + R +AC L D + ++N E+ + ++AR Sbjct: 285 LDRWGELAKEIETRREDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAALAR 340 >UniRef50_Q3YR08 3'-5' exonuclease n=4 Tax=Bacteria RepID=Q3YR08_EHRCJ Length = 216 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 2/180 (1%) Query: 14 SLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALIDPLGITDWSPLKAILRD 72 L + A+A+DTE + +L L+QL D + L+ G L ++L D Sbjct: 21 DLPNGLNFEDAVAIDTETMGLVCRRDRLCLVQLADSSGNVHLVKFSGNYQAPNLVSVLSD 80 Query: 73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLD 131 P+I K H D+ V G P T+I + G + E GV L+ Sbjct: 81 PNIIKIFHFARFDIAVMRYYLGMWANPCYCTKIASKLVRTYTDHHGLKELCYELLGVKLN 140 Query: 132 KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQ 191 K + +DW LT Q YAA+DV YL + +KL + A + +Q R Q Sbjct: 141 KMQQSSDWGRESLTSEQLNYAASDVIYLHALKSKLDAMLQRENKRELAAACFKFLQTRAQ 200 >UniRef50_Q16LC6 3-5 exonuclease n=3 Tax=Culicidae RepID=Q16LC6_AEDAE Length = 771 Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 20/227 (8%) Query: 2 NYQMITTDDALASLCEAVRAF----PAIALDTEFVRTRTYYPQLGLIQLFDGEH-LALID 56 + +++T + + +R + D E+V + + L+QL ALI Sbjct: 45 SVRIVTNPEDCQKVIGLLRDHCREFRVLGFDCEWVNEQGKRHPVALLQLATHRGLCALIR 104 Query: 57 PLGITDWSP-LKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMS 115 + P L +L DP+I K ED ++ + + + +D + LA CG P Sbjct: 105 LCEMKRIPPELGELLNDPAIVKVGVGPLEDAKLLRHDYNLKVESTLDLRHLADRCGVPGP 164 Query: 116 WGFASMVEEYSGVTLDK--SESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET--- 170 +G A + E+ GV LDK ++W LTERQ +YAA+D + + + Sbjct: 165 YGMAKLAEKTLGVKLDKHWRIRASNWENAQLTERQIQYAASDAHVAVELFRTFAKKAVPR 224 Query: 171 ----EASGWLPAALDECRLMQMRRQEV-----VAPEDAWRDITNAWQ 208 WL ++E +R P + + + + Sbjct: 225 SLFSSQKSWLTKTINELECFFDQRFHDRFTSSSDPNRGKKKLLSVSK 271 >UniRef50_Q179T2 Probable exonuclease mut-7 homolog n=2 Tax=Culicini RepID=MUT7_AEDAE Length = 719 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 94/255 (36%), Gaps = 29/255 (11%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDP---- 57 + ++ + D ++ + IA D+E+ T ++ LIQL + + +ID Sbjct: 436 HVHLVDSKDKFYAMLSDLCRQSMIAFDSEWKPTFGGANEVSLIQLATWDDVYMIDVMVSQ 495 Query: 58 LGITDWSPL-KAILRDPSITKFLHAGSEDLEVFLN---VFGEL-----PQPLIDTQILAA 108 L DW+ L K + + K A S D+ +F F + ++D Q+L Sbjct: 496 LEPLDWAALAKNVFNRDDVLKLSFAPSTDISMFQKALPSFNVMYSSQSTSAILDLQLLWR 555 Query: 109 FCGRPMSW-----------GFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVW 157 R S+ A++V G LDKS ++W RPL + Q YAA D + Sbjct: 556 HVERFDSFRFPYHEESVNQNLANLVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAF 615 Query: 158 YLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACL 217 LL I + + P ++ +V P D+ + Sbjct: 616 CLLEIYDAIEKQLTHIQLDP-----NEILNALLNDVRPPSDSGTRRAGRQDGSSGSRRNH 670 Query: 218 QLLADWRLRKARERD 232 + + R A + + Sbjct: 671 RDKYNKRHAYAEDSN 685 >UniRef50_B3L150 Exonuclease, putative n=6 Tax=Plasmodium RepID=B3L150_PLAKH Length = 414 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 95/285 (33%), Gaps = 43/285 (15%) Query: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHL--------- 52 + +++ + E + IA+D E Y ++ ++Q++ E Sbjct: 82 DIKIVENEKEGNDAAEEINRNDIIAVDFEGTNLGKY-GKVCIMQVYTEERTPGGVHPKSE 140 Query: 53 -------ALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQI 105 + D L ++ +K I+ + K +H ED N G + + DT Sbjct: 141 CLSREKYYIFDLLKMSVIKSVKKIIENKKTLKLVHDCREDSSALYNQLGIKFENVYDTSR 200 Query: 106 LAAFCGRPMS------WGFASMVEEYSGVTLD-----KSESRTD---WLARPLTERQCEY 151 F ++ +Y G+ D K E + W RPL++ Y Sbjct: 201 AHMLLMEKNRNSDIYQVSFLQLLNDYLGIKDDCLSSIKKEMYKNEKIWEVRPLSKMSIIY 260 Query: 152 AAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWR-DITNAWQLR 210 A +V YL P+ L + D M + + + A R ++ A + Sbjct: 261 ALKNVKYLFPLYRIFDNMLSKKIVLEKSKDFVNYCFMNSRYKLPVDLAKRGNVVQAMLVS 320 Query: 211 TRQLACLQLLADWRLRK-------ARERDLAVN----FVVREEHL 244 L C+ L R A+ RD+ V V+ + + Sbjct: 321 KSMLNCVFKLNSTRKGIACTPSSVAQFRDVKVGDVVLCVISNKSI 365 >UniRef50_A9LGS2 Ribonuclease D (Fragment) n=1 Tax=uncultured planctomycete 5H12 RepID=A9LGS2_9BACT Length = 287 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 87/213 (40%), Gaps = 3/213 (1%) Query: 161 PITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLL 220 + + + L +DE L M + E W+ ++ L R+LA ++ L Sbjct: 50 DLYEVIEGHLKRLKRLAWYIDEVDLW-MEELVKMETEPQWQRVSGITSLNPRELAIVREL 108 Query: 221 ADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALV 279 R +A R+ + V+ ++ + +A+ S+G ++ G R + + Sbjct: 109 WICRDIEAARRNRSAKRVIPDDLIVELAKRGSSSIGSFKAIRGFENRVTRGISSEISEAI 168 Query: 280 EKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLN 339 EKA L + LP+ + M + + + +T V +IS ++ + + ++ Sbjct: 169 EKANGLAKTELPKKLPRGKSM-NLGLLGQFLSTALTVVCRDQQISPAIVGTASDVRKMAA 227 Query: 340 WHWKLKPQNNLPELISGWRGELMAEALHNLLQE 372 W L + P L+ GWR E++ + + +L Sbjct: 228 WRLGLLKMDQPPSLVQGWRAEIVGQLIDQVLNG 260 >UniRef50_UPI0001B79EC0 Werner syndrome homolog (human) n=1 Tax=Rattus norvegicus RepID=UPI0001B79EC0 Length = 1448 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 80/217 (36%), Gaps = 7/217 (3%) Query: 13 ASLCEAVRAFPAIALDTEFVRTR--TYYPQLGLIQLF-DGEHLALIDPLGITDWS-PLKA 68 + + + D E+ ++ +IQL L ++ + LK Sbjct: 68 EDISMHLSDGDVVGFDMEWPPIYKQGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKM 127 Query: 69 ILRDPSITKFLHAGSEDLEVFLNVFGELPQPLID-TQILAAFCGRPMSWGFASMVEEYSG 127 +L + SI K D L F + ++ T + +W +V+ G Sbjct: 128 LLENKSIRKAGVGIEGDQWKLLRDFDVKLESFVELTDVANRKLKCAETWSLNGLVKHVLG 187 Query: 128 VTL--DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 L DKS ++W PL+E Q YAA D + L I KL +A E L Sbjct: 188 KQLLKDKSIRCSNWSDFPLSEDQKLYAATDAYAGLIIYQKLENLGDAVQVFALNKAEESL 247 Query: 186 MQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD 222 ++++ + + RD+ N + + R L LQ + Sbjct: 248 PMEMKKQLNSISEEMRDLANHFPVTCRNLETLQRVPM 284 >UniRef50_Q1ARA6 DNA polymerase I n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ARA6_RUBXD Length = 582 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 5/184 (2%) Query: 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD 62 +++IT + L A+ + LD E ++ L+QL G ++D + D Sbjct: 8 FRLITGPEGLREAARALAGARRVGLDIEATGLSPLDARMRLLQLAAGGETFVVDVFEVKD 67 Query: 63 WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG---RPMSWGFA 119 SPL+ L K LH D L G PL DT + A + S+ Sbjct: 68 LSPLREALEG-GPLKVLHNAKYDYSFLLAQHGIRLSPLFDTMLAAQLLDGGEQGPSYSLE 126 Query: 120 SMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAA 179 ++ Y T+DK+ R DW L+ Q EYAA D LLP+ +L E G P + Sbjct: 127 AVAGRYLQETVDKTARREDWSK-ELSREQLEYAARDAAILLPLHERLQELLEREGLGPVS 185 Query: 180 LDEC 183 E Sbjct: 186 RIEF 189 >UniRef50_Q7UZS1 Putative ribonuclease D n=3 Tax=Cyanobacteria RepID=Q7UZS1_PROMP Length = 213 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 4/177 (2%) Query: 14 SLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDP-LGITDWSPLKAILR 71 L + +A+DTE + +L LIQ+ + A I L +D +K + Sbjct: 20 DLYNLYKDSSYLAVDTEAMGLIHGRDRLCLIQICNELNLTACIKIELNNSDSPNIKKLFE 79 Query: 72 DPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTL 130 D +I K H D+ + + T+I + G ++ E V L Sbjct: 80 DKNIMKIFHYARFDVAALRCNLEINTRNIFCTKIASKLARTYTNKHGLKDLINELLEVEL 139 Query: 131 DKSESRTDW-LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLM 186 DKS +DW L+ +Q +YAA DV YL+ KL + + G A + + Sbjct: 140 DKSSQSSDWGSLEDLSNKQIDYAANDVRYLIETMHKLKLILDREGRYELAQKCFKTI 196 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.150 0.404 Lambda K H 0.267 0.0460 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,285,798,938 Number of Sequences: 3077464 Number of extensions: 99870743 Number of successful extensions: 307610 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1338 Number of HSP's successfully gapped in prelim test: 751 Number of HSP's that attempted gapping in prelim test: 302149 Number of HSP's gapped (non-prelim): 2613 length of query: 375 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 245 effective length of database: 640,326,036 effective search space: 156879878820 effective search space used: 156879878820 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.7 bits)