BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (419 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A7FN82 L-rhamnose isomerase n=32 Tax=Bacteria RepID=RHA... 758 0.0 UniRef50_Q5WL39 L-rhamnose isomerase n=226 Tax=Bacteria RepID=RH... 518 e-145 UniRef50_Q8A1A2 L-rhamnose isomerase n=34 Tax=Bacteria RepID=RHA... 489 e-137 UniRef50_B0P6A7 Putative uncharacterized protein n=1 Tax=Anaerot... 423 e-117 >UniRef50_A7FN82 L-rhamnose isomerase n=32 Tax=Bacteria RepID=RHAA_YERP3 Length = 418 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/418 (85%), Positives = 391/418 (93%) Query: 1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQ 60 MT +EQAW+LAKQRFAAVG+DV+ AL +LD LPVSMHCWQGDDV+GFE+P+G LTGGIQ Sbjct: 1 MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ 60 Query: 61 ATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVE 120 ATGNYPGKARNA+ELR+DLE A+ LIPGPKRLNLHAIYLESDTPV+R++I+P HF +WV Sbjct: 61 ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVA 120 Query: 121 WAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS 180 WAK +QLGLDFNPSCFSHPLSADGFTLSHAD IRQFWI+HC+ASRR+SAYFGEQLGTPS Sbjct: 121 WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRISAYFGEQLGTPS 180 Query: 181 VMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240 VMNIWIPDGMKD +DRLAPRQRLL+ALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG Sbjct: 181 VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240 Query: 241 SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVL 300 SNEFYMGYA SRQTALCLDAGHFHPTEVISDKIS+AMLYVP+LLLHVSRPVRWDSDHVVL Sbjct: 241 SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL 300 Query: 301 LDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAEL 360 LDDETQAIASEI+RH+LFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPT L Sbjct: 301 LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRL 360 Query: 361 RKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 R+LE GDYTARLALLEEQKSLPWQA+WE YCQR+D P + WL++VR YE++ILS+R Sbjct: 361 RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR 418 >UniRef50_Q5WL39 L-rhamnose isomerase n=226 Tax=Bacteria RepID=RHAAB_BACSK Length = 894 Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust. Identities = 233/411 (56%), Positives = 311/411 (75%), Gaps = 1/411 (0%) Query: 9 WELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGK 68 +E AK ++ +GIDVE A ++ ++P+S+HCWQGDD+ G E L+GGI TGN+PG+ Sbjct: 476 FESAKVQYEQLGIDVEAAFAKVKQVPISVHCWQGDDLHGTEVIANELSGGIDVTGNHPGR 535 Query: 69 ARNASELRADLEQAMRLIPGPKRLNLHAIYLESDT-PVSRDQIKPEHFKNWVEWAKANQL 127 ARN ELR DLE+A+ LIPG R+NLHA+Y E+D+ P+ RDQ+K EHF+ WV+WAK+ + Sbjct: 536 ARNGEELRRDLEKALSLIPGKHRVNLHAMYAETDSVPIERDQLKTEHFEKWVKWAKSLGI 595 Query: 128 GLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP 187 GLDFNP+ FSHP +ADG TL+H D+ IR FWI+HCKA R+++AYFGEQLGTPS++NIW+P Sbjct: 596 GLDFNPTVFSHPKAADGLTLAHPDEEIRTFWINHCKACRKIAAYFGEQLGTPSLVNIWVP 655 Query: 188 DGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMG 247 DG KD DRL PR+RL +LD + +++ +P +D VESKLFGIG+E+Y VGS+EFY+ Sbjct: 656 DGYKDTPSDRLTPRKRLKESLDAIYADEYDPMLVLDTVESKLFGIGSEAYVVGSHEFYLN 715 Query: 248 YATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQA 307 YA LD GHFHPTEV+S+K+SA +L+ QL LHVSRPVRWDSDHVV DDE + Sbjct: 716 YANQNNKLYLLDTGHFHPTEVVSNKLSAMLLFHDQLALHVSRPVRWDSDHVVTFDDELRE 775 Query: 308 IASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAG 367 IA E+VR+D +HIGLDFFDASINR+AAW IGTRNM KALL A L P L++L+ G Sbjct: 776 IAIELVRNDALGNIHIGLDFFDASINRVAAWAIGTRNMAKALLYAALMPHRHLKQLQDEG 835 Query: 368 DYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 D+T+RLA+ E+ K+ P+ +W+ YC+R P +EWL+ V+ YE+++ +R Sbjct: 836 DFTSRLAMQEQLKTYPFGDMWDEYCKRQGVPTETEWLDVVKEYEQQVQLKR 886 >UniRef50_Q8A1A2 L-rhamnose isomerase n=34 Tax=Bacteria RepID=RHAA_BACTN Length = 418 Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust. Identities = 225/415 (54%), Positives = 303/415 (73%), Gaps = 4/415 (0%) Query: 5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGN 64 +++A+E+A +R+AAVG+D E+ L+ + +S+HCWQ DDV+GFE G+L+GGIQATGN Sbjct: 7 IQKAYEIAVERYAAVGVDTEKVLKTMQDFHLSLHCWQADDVTGFEVQAGALSGGIQATGN 66 Query: 65 YPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLE-SDTPVSRDQIKPEHFKNWVEWAK 123 YPGKARN ELRAD+ +A IPG RLNLH IY + V RDQ++PEHFK+W+EW K Sbjct: 67 YPGKARNIDELRADILKAASYIPGTHRLNLHEIYGDFQGKVVDRDQVEPEHFKSWIEWGK 126 Query: 124 ANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMN 183 + + LDFN + FSHP S D +LS+ D+ IRQFWI+H K R V+ G+ G P +MN Sbjct: 127 EHNMKLDFNSTSFSHPKSGD-LSLSNPDEGIRQFWIEHTKRCRAVAEEMGKAQGDPCIMN 185 Query: 184 IWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNE 243 +W+ DG KDITV+R+ R L +LD++ + + D +ESK+FGIG ESYTVGSN+ Sbjct: 186 LWVHDGSKDITVNRMKYRALLKDSLDQIFATEYKNMK--DCIESKVFGIGLESYTVGSND 243 Query: 244 FYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDD 303 FY+GY SR + LD GHFHPTE ++DK+S+ +LYVP+L+LHVSRPVRWDSDHV ++DD Sbjct: 244 FYIGYGASRNKMVTLDTGHFHPTESVADKVSSLLLYVPELMLHVSRPVRWDSDHVTIMDD 303 Query: 304 ETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKL 363 T + SEIVR +RVH GLD+FDASINRI A+VIG+R +K + RALLEP A+LR+ Sbjct: 304 PTMELFSEIVRCGALERVHYGLDYFDASINRIGAYVIGSRAAQKCMTRALLEPIAKLREY 363 Query: 364 EAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 EA G RLALLEE+K+LPW AVW+M+C +++ P G +++ + YE E+ S+R Sbjct: 364 EANGQGFQRLALLEEEKALPWNAVWDMFCLKNNVPVGEDFIAEIEKYEAEVTSKR 418 >UniRef50_B0P6A7 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6A7_9FIRM Length = 406 Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust. Identities = 195/402 (48%), Positives = 288/402 (71%), Gaps = 3/402 (0%) Query: 5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGN 64 + + +E A++ +A+ G+D EEA+R++D +P+S++CWQ DD++GFE+ + LTGGIQATGN Sbjct: 1 MSKHYETAREIYASWGVDTEEAIRRMDEIPLSINCWQLDDLTGFEDFDAQLTGGIQATGN 60 Query: 65 YPGKARNASELRADLEQAMRLIPGPKRLNLHAIY-LESDTPVSRDQIKPEHFKNWVEWAK 123 PGK R+ E +L++ + L+PG K L LH++Y L + + RD+++PEHF W+++A+ Sbjct: 61 APGKPRSIEEYFTNLDKMLSLVPGAKHLALHSVYPLTNGVKIPRDELRPEHFAPWIDYAR 120 Query: 124 ANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMN 183 +GLDFNP+ FSHP+ DG+TL+ D +R FWI H A R++ FG+ LG + N Sbjct: 121 EKGIGLDFNPTYFSHPMLKDGWTLASPDKGVRDFWIQHGIACRKIGESFGKALGETCITN 180 Query: 184 IWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNE 243 WIPDG KD VD L PR+RL+ +L+++ +E ++P ++ D+VE K+FG+G ESYTVGS++ Sbjct: 181 HWIPDGSKDTRVDMLGPRERLIDSLNQIFAEFIDPKYNRDSVEGKVFGLGVESYTVGSHD 240 Query: 244 FYMGYA-TSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLD 302 FY Y T+ + +C+D GH+HPTE ++DK+S+ + + +++ H+SR VRWDSDHV ++ Sbjct: 241 FYANYVLTTGKAMVCMDIGHYHPTESVADKLSSYLAFNQEIMTHLSRGVRWDSDHVAVVS 300 Query: 303 DETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRK 362 +E AI +I R + FD+VH+GLDFFDASI+RIAA VIG+R++KK L+ ALLEPT L K Sbjct: 301 EEIVAIMQQIKRCNAFDKVHLGLDFFDASIDRIAASVIGSRSVKKCLMTALLEPTERLMK 360 Query: 363 LEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWL 404 EA D T RLAL EE K LP V++ YC+RH A S W+ Sbjct: 361 AEAQEDLTRRLALQEEFKMLPAGIVFDEYCERHGVKA-SNWM 401 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7FN82 L-rhamnose isomerase n=32 Tax=Bacteria RepID=RHA... 762 0.0 UniRef50_Q5WL39 L-rhamnose isomerase n=226 Tax=Bacteria RepID=RH... 719 0.0 UniRef50_Q8A1A2 L-rhamnose isomerase n=34 Tax=Bacteria RepID=RHA... 700 0.0 UniRef50_B0P6A7 Putative uncharacterized protein n=1 Tax=Anaerot... 677 0.0 Sequences not found previously or not previously below threshold: UniRef50_Q1AVD7 Rhamnose isomerase related n=40 Tax=Bacteria Rep... 71 7e-11 UniRef50_Q98B65 Probable sugar isomerase mlr5709 n=20 Tax=cellul... 70 1e-10 UniRef50_C8WTK9 L-rhamnose isomerase n=13 Tax=Bacteria RepID=C8W... 57 2e-06 UniRef50_B9JIX6 L-rhamnose catabolism isomerase n=14 Tax=Proteob... 55 5e-06 UniRef50_D0MFR3 Xylose isomerase domain protein TIM barrel n=17 ... 54 1e-05 >UniRef50_A7FN82 L-rhamnose isomerase n=32 Tax=Bacteria RepID=RHAA_YERP3 Length = 418 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 356/418 (85%), Positives = 391/418 (93%) Query: 1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQ 60 MT +EQAW+LAKQRFAAVG+DV+ AL +LD LPVSMHCWQGDDV+GFE+P+G LTGGIQ Sbjct: 1 MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ 60 Query: 61 ATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVE 120 ATGNYPGKARNA+ELR+DLE A+ LIPGPKRLNLHAIYLESDTPV+R++I+P HF +WV Sbjct: 61 ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVA 120 Query: 121 WAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS 180 WAK +QLGLDFNPSCFSHPLSADGFTLSHAD IRQFWI+HC+ASRR+SAYFGEQLGTPS Sbjct: 121 WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRISAYFGEQLGTPS 180 Query: 181 VMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240 VMNIWIPDGMKD +DRLAPRQRLL+ALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG Sbjct: 181 VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240 Query: 241 SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVL 300 SNEFYMGYA SRQTALCLDAGHFHPTEVISDKIS+AMLYVP+LLLHVSRPVRWDSDHVVL Sbjct: 241 SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL 300 Query: 301 LDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAEL 360 LDDETQAIASEI+RH+LFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPT L Sbjct: 301 LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRL 360 Query: 361 RKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 R+LE GDYTARLALLEEQKSLPWQA+WE YCQR+D P + WL++VR YE++ILS+R Sbjct: 361 RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR 418 >UniRef50_Q5WL39 L-rhamnose isomerase n=226 Tax=Bacteria RepID=RHAAB_BACSK Length = 894 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 233/417 (55%), Positives = 313/417 (75%), Gaps = 1/417 (0%) Query: 3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQAT 62 + + +E AK ++ +GIDVE A ++ ++P+S+HCWQGDD+ G E L+GGI T Sbjct: 470 SHVSSRFESAKVQYEQLGIDVEAAFAKVKQVPISVHCWQGDDLHGTEVIANELSGGIDVT 529 Query: 63 GNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDT-PVSRDQIKPEHFKNWVEW 121 GN+PG+ARN ELR DLE+A+ LIPG R+NLHA+Y E+D+ P+ RDQ+K EHF+ WV+W Sbjct: 530 GNHPGRARNGEELRRDLEKALSLIPGKHRVNLHAMYAETDSVPIERDQLKTEHFEKWVKW 589 Query: 122 AKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSV 181 AK+ +GLDFNP+ FSHP +ADG TL+H D+ IR FWI+HCKA R+++AYFGEQLGTPS+ Sbjct: 590 AKSLGIGLDFNPTVFSHPKAADGLTLAHPDEEIRTFWINHCKACRKIAAYFGEQLGTPSL 649 Query: 182 MNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGS 241 +NIW+PDG KD DRL PR+RL +LD + +++ +P +D VESKLFGIG+E+Y VGS Sbjct: 650 VNIWVPDGYKDTPSDRLTPRKRLKESLDAIYADEYDPMLVLDTVESKLFGIGSEAYVVGS 709 Query: 242 NEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLL 301 +EFY+ YA LD GHFHPTEV+S+K+SA +L+ QL LHVSRPVRWDSDHVV Sbjct: 710 HEFYLNYANQNNKLYLLDTGHFHPTEVVSNKLSAMLLFHDQLALHVSRPVRWDSDHVVTF 769 Query: 302 DDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELR 361 DDE + IA E+VR+D +HIGLDFFDASINR+AAW IGTRNM KALL A L P L+ Sbjct: 770 DDELREIAIELVRNDALGNIHIGLDFFDASINRVAAWAIGTRNMAKALLYAALMPHRHLK 829 Query: 362 KLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 +L+ GD+T+RLA+ E+ K+ P+ +W+ YC+R P +EWL+ V+ YE+++ +R Sbjct: 830 QLQDEGDFTSRLAMQEQLKTYPFGDMWDEYCKRQGVPTETEWLDVVKEYEQQVQLKR 886 >UniRef50_Q8A1A2 L-rhamnose isomerase n=34 Tax=Bacteria RepID=RHAA_BACTN Length = 418 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 225/415 (54%), Positives = 303/415 (73%), Gaps = 4/415 (0%) Query: 5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGN 64 +++A+E+A +R+AAVG+D E+ L+ + +S+HCWQ DDV+GFE G+L+GGIQATGN Sbjct: 7 IQKAYEIAVERYAAVGVDTEKVLKTMQDFHLSLHCWQADDVTGFEVQAGALSGGIQATGN 66 Query: 65 YPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLE-SDTPVSRDQIKPEHFKNWVEWAK 123 YPGKARN ELRAD+ +A IPG RLNLH IY + V RDQ++PEHFK+W+EW K Sbjct: 67 YPGKARNIDELRADILKAASYIPGTHRLNLHEIYGDFQGKVVDRDQVEPEHFKSWIEWGK 126 Query: 124 ANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMN 183 + + LDFN + FSHP S D +LS+ D+ IRQFWI+H K R V+ G+ G P +MN Sbjct: 127 EHNMKLDFNSTSFSHPKSGD-LSLSNPDEGIRQFWIEHTKRCRAVAEEMGKAQGDPCIMN 185 Query: 184 IWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNE 243 +W+ DG KDITV+R+ R L +LD++ + + D +ESK+FGIG ESYTVGSN+ Sbjct: 186 LWVHDGSKDITVNRMKYRALLKDSLDQIFATEYKNMK--DCIESKVFGIGLESYTVGSND 243 Query: 244 FYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDD 303 FY+GY SR + LD GHFHPTE ++DK+S+ +LYVP+L+LHVSRPVRWDSDHV ++DD Sbjct: 244 FYIGYGASRNKMVTLDTGHFHPTESVADKVSSLLLYVPELMLHVSRPVRWDSDHVTIMDD 303 Query: 304 ETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKL 363 T + SEIVR +RVH GLD+FDASINRI A+VIG+R +K + RALLEP A+LR+ Sbjct: 304 PTMELFSEIVRCGALERVHYGLDYFDASINRIGAYVIGSRAAQKCMTRALLEPIAKLREY 363 Query: 364 EAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 EA G RLALLEE+K+LPW AVW+M+C +++ P G +++ + YE E+ S+R Sbjct: 364 EANGQGFQRLALLEEEKALPWNAVWDMFCLKNNVPVGEDFIAEIEKYEAEVTSKR 418 >UniRef50_B0P6A7 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6A7_9FIRM Length = 406 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 195/402 (48%), Positives = 288/402 (71%), Gaps = 3/402 (0%) Query: 5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGN 64 + + +E A++ +A+ G+D EEA+R++D +P+S++CWQ DD++GFE+ + LTGGIQATGN Sbjct: 1 MSKHYETAREIYASWGVDTEEAIRRMDEIPLSINCWQLDDLTGFEDFDAQLTGGIQATGN 60 Query: 65 YPGKARNASELRADLEQAMRLIPGPKRLNLHAIY-LESDTPVSRDQIKPEHFKNWVEWAK 123 PGK R+ E +L++ + L+PG K L LH++Y L + + RD+++PEHF W+++A+ Sbjct: 61 APGKPRSIEEYFTNLDKMLSLVPGAKHLALHSVYPLTNGVKIPRDELRPEHFAPWIDYAR 120 Query: 124 ANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMN 183 +GLDFNP+ FSHP+ DG+TL+ D +R FWI H A R++ FG+ LG + N Sbjct: 121 EKGIGLDFNPTYFSHPMLKDGWTLASPDKGVRDFWIQHGIACRKIGESFGKALGETCITN 180 Query: 184 IWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNE 243 WIPDG KD VD L PR+RL+ +L+++ +E ++P ++ D+VE K+FG+G ESYTVGS++ Sbjct: 181 HWIPDGSKDTRVDMLGPRERLIDSLNQIFAEFIDPKYNRDSVEGKVFGLGVESYTVGSHD 240 Query: 244 FYMGYA-TSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLD 302 FY Y T+ + +C+D GH+HPTE ++DK+S+ + + +++ H+SR VRWDSDHV ++ Sbjct: 241 FYANYVLTTGKAMVCMDIGHYHPTESVADKLSSYLAFNQEIMTHLSRGVRWDSDHVAVVS 300 Query: 303 DETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRK 362 +E AI +I R + FD+VH+GLDFFDASI+RIAA VIG+R++KK L+ ALLEPT L K Sbjct: 301 EEIVAIMQQIKRCNAFDKVHLGLDFFDASIDRIAASVIGSRSVKKCLMTALLEPTERLMK 360 Query: 363 LEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWL 404 EA D T RLAL EE K LP V++ YC+RH A S W+ Sbjct: 361 AEAQEDLTRRLALQEEFKMLPAGIVFDEYCERHGVKA-SNWM 401 >UniRef50_Q1AVD7 Rhamnose isomerase related n=40 Tax=Bacteria RepID=Q1AVD7_RUBXD Length = 405 Score = 71.3 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 146/401 (36%), Gaps = 70/401 (17%) Query: 1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCW-QGDDVSGFENPEGSLTGGI 59 M + QA+E ++ A G+D+ +L V W G+ + F Sbjct: 1 MEATVRQAYEAFRETQAERGVDLAGVEERLRAQRVETPSWGYGNSGTRFAVFP------- 53 Query: 60 QATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWV 119 PG RN E D Q + LH + D + E ++ Sbjct: 54 -----QPGVPRNPFEKLQDAAQVHAHTGICPSVALH---------IPWDAV--EDYRELA 97 Query: 120 EWAKANQLGLD-FNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGT 178 ++A + L L NP+ F G ++ + D ++R+ DH ++ G + Sbjct: 98 DYAGSLGLRLGAINPNLFQEEDYRLG-SVCNPDPAVRRRATDHLLECVEIAGEVGSR--- 153 Query: 179 PSVMNIWIPDGM----KDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGA 234 V+++W+ DG +D V+R R R+L L EV + +E KLF Sbjct: 154 --VLSLWLADGTNYPGQDSFVER---RGRMLECLSEVYGRMPEDMRLL--LEYKLF---- 202 Query: 235 ESYTVGSNEFY------------MGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQ 282 FY M + + +D GH H V + I + +L + Sbjct: 203 ------EPAFYHTDLCDWGCALTMCQKLGERALVLVDLGH-HAQGVNVEHIVSLLLDEGR 255 Query: 283 LL-LHVSRPVRWDSDHVV--LLDDETQAIASEIVRH--DLFDRVHIGLDFFDASINRIAA 337 L H + D D VV + E I E++ D R+ +D +I A Sbjct: 256 LGGFHFNNRKYADDDLVVGSINPFELFLIYVELLEAEEDPGVRIEYMIDQAHNIEPKIEA 315 Query: 338 WVIGTRNMKKALLRALLEPTAELRKLEAAGD--YTARLALL 376 ++ N+++A +ALL LR+ +GD RL L Sbjct: 316 MILSVMNLQEAYAKALLVDREALREARLSGDVLGAHRLLLE 356 >UniRef50_Q98B65 Probable sugar isomerase mlr5709 n=20 Tax=cellular organisms RepID=RHAL_RHILO Length = 430 Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 146/383 (38%), Gaps = 54/383 (14%) Query: 5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGN 64 LE+ + +R GI ++ ++++ V++ W G TGG + Sbjct: 22 LERDYASLGERLDRRGIAIDAIRAKVEKFAVAIPSW------------GVGTGGTRF-AR 68 Query: 65 YPG--KARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWA 122 +PG + R+ + D +L ++LH + D+ P K + A Sbjct: 69 FPGAGEPRDIFDKIEDCAVISQLTQATPTVSLH---------IPWDKADPNRLK---QAA 116 Query: 123 KANQLGLD-FNPSCFS----HPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLG 177 LG D N + FS LS +LSHAD R+ ++H + G+ LG Sbjct: 117 SRFGLGFDAMNSNTFSDARDQKLSYKFGSLSHADAGTRRQAVEHNLECIEI----GKTLG 172 Query: 178 TPSVMNIWIPDGMK-DITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAES 236 + ++ +WI DG V+ +R L A+ V + PA E K++ S Sbjct: 173 SKALT-VWIGDGSNFPGQVNFARAFERYLDAMKAVYAGL--PADWKLFTEHKMYEPAFYS 229 Query: 237 YTV---GSNEFYMGYATSRQTALCL-DAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVR 292 V G+N Y+ A CL D GH P I +S + + H + Sbjct: 230 TVVQDWGTN--YLIAKELGDRAFCLVDLGHHAPNVNIEMIVSRLIQFKKLGGFHFNDSKY 287 Query: 293 WDSDHVVLLDDETQ--AIASEIVRHDL-----FDRVHIGLDFFDASINRIAAWVIGTRNM 345 D D D + + +E+V +L FD H+ LD + I + ++ + Sbjct: 288 GDDDLDAGSIDPYRLFLVFNELVDAELSGAEGFDPAHM-LDQSHNVTDPIESLMLSAVEV 346 Query: 346 KKALLRALLEPTAELRKLEAAGD 368 ++A +ALL L + D Sbjct: 347 QRAYAQALLVDRKALEGFQDGND 369 >UniRef50_C8WTK9 L-rhamnose isomerase n=13 Tax=Bacteria RepID=C8WTK9_ALIAD Length = 409 Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 148/385 (38%), Gaps = 53/385 (13%) Query: 3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCW-QGDDVSGFENPEGSLTGGIQA 61 ++++QA+ L + G+D++ A R+L L V W GD + F+ Sbjct: 2 SRMDQAYALLEAECRDRGVDLDAAARRLAALEVETPSWGYGDSGTRFKVF---------- 51 Query: 62 TGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEW 121 PG RNA E D RL + +H + D++ + ++ + Sbjct: 52 --RQPGVPRNAFEKIDDAAVVHRLTGACPSVAIH---------IPWDRV--DDYRALADH 98 Query: 122 AKANQLGLD-FNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS 180 A L + NP+ F G ++++ IR+ I H V + Sbjct: 99 AHNQGLRIGAVNPNLFQDDDYMLG-SITNVKPEIRRKAIQHILECVDVMREV-----RSN 152 Query: 181 VMNIWIPDGMKDITVDRLAPRQR-LLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTV 239 V+++W+PDG + R+R L AL E+ + L+P + +E K F Y Sbjct: 153 VLSLWVPDGTNYPGQGDIRRRKRWLEEALREIY-DALDPDMRL-LIEYKFFEPAF--YHT 208 Query: 240 GSNEFYMGYATSR----QTALCLDAGHFHPTEVISDKISAAMLYVPQL-LLHVSRPVRWD 294 ++ M Y + Q + +D GH HP + I A +L +L H + D Sbjct: 209 DLADWGMAYLAAEKLGPQAQVLVDTGH-HPQGTNVEHIVAVLLDEGRLGGFHFNSRKYAD 267 Query: 295 SDHVV--LLDDETQAIASEIVRHDLFDR---------VHIGLDFFDASINRIAAWVIGTR 343 D +V + E I +I+ + D + +D A +I A + Sbjct: 268 DDLIVGAIQPYELFLIFCQILEAERSDDERVAATARAIAYMIDQSHAVEPKIPAMIRSVC 327 Query: 344 NMKKALLRALLEPTAELRKLEAAGD 368 N++ +ALL P LR+ + D Sbjct: 328 NIQTQFAKALLIPWDLLRERQKQND 352 >UniRef50_B9JIX6 L-rhamnose catabolism isomerase n=14 Tax=Proteobacteria RepID=B9JIX6_AGRRK Length = 430 Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 147/393 (37%), Gaps = 72/393 (18%) Query: 4 QLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATG 63 L +E A GID+E +++ V++ W G TGG + Sbjct: 21 ALTSDYEALGATLARRGIDIENITKKVSEFFVAIPSW------------GVGTGGTRF-A 67 Query: 64 NYP--GKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEW 121 +P G+ R + D +L ++LH + D+ + Sbjct: 68 RFPGTGEPRGIFDKLDDCAVINQLTRATPNVSLH---------IPWDKADARELR----- 113 Query: 122 AKANQLGLDF---NPSCFSH-PLSADGF---TLSHADDSIRQFWIDHCKASRRVSAYFGE 174 AK + LGL F N + FS P A + +LSH D + R ++H + G+ Sbjct: 114 AKGDALGLGFDAMNSNTFSDAPGQAHSYKYGSLSHVDAATRAQAVEHNLECIEI----GK 169 Query: 175 QLGTPSVMNIWIPDGMK-DITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIG 233 +G+ ++ +W+ DG + +R LAA+ ++ + E K++ Sbjct: 170 AIGSKALT-VWVGDGSNFPGQSNFTRAFERYLAAMADIYKALPDDWRLFS--EHKMYEPA 226 Query: 234 AESYTV---GSNEFYMGYATSRQTALCL-DAGHFHPTEVISDKISAAMLYVPQLLLHVSR 289 S V G+N Y+ T A CL D GH P I ++ + + H + Sbjct: 227 FYSSVVQDWGTN--YLIAQTLGPKAQCLVDLGHHAPNTNIEMIVARLIQFGKLGGFHFN- 283 Query: 290 PVRWDSDHVVLLDDETQAIASE-----IVRHDLFDRVHIGLDFFDAS---------INRI 335 DS + DD+ A A E +V ++L D G++ F+ + + I Sbjct: 284 ----DSKY---GDDDLDAGAIEPYRLFLVFNELIDAEQRGVNDFNPAHMIDQSHNVTDPI 336 Query: 336 AAWVIGTRNMKKALLRALLEPTAELRKLEAAGD 368 + + +++A +AL+ L + D Sbjct: 337 ESLISSANEIRRAYAQALIVDRKALAGYQDTND 369 >UniRef50_D0MFR3 Xylose isomerase domain protein TIM barrel n=17 Tax=Bacteria RepID=D0MFR3_RHOM4 Length = 428 Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 145/384 (37%), Gaps = 54/384 (14%) Query: 10 ELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYP--G 67 E +R A GI +E L +L V++ W ++ G G +P G Sbjct: 23 EYLAERLARSGIALEVVLDELATFEVALPTW-------------AMAAGGTRFGRFPIPG 69 Query: 68 KARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQL 127 + R E D +L R++ H D + + + A+A L Sbjct: 70 EPRTIFEKLEDAAVIHQLTRATPRVSPH---------FPWDVV--DDWAALRAHAEALGL 118 Query: 128 GLD-FNPSCFS----HPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVM 182 G D N + F P S +LSHAD ++R+ I H +G++LG+ ++ Sbjct: 119 GFDAVNSNTFQDQPGQPHSYKLGSLSHADPAVRRQAIAHNLQVVA----WGQELGSTALT 174 Query: 183 NIWIPDGMKDITVDRLAPR--QRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTV- 239 +W+ DG + R +R+ +L E+ + P +E K + + + Sbjct: 175 -VWLADGS-NYPGQMHLRRSFERVQESLAEIYAAL--PEGWRMLIEYKPYEPAFYATVIQ 230 Query: 240 --GSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDH 297 GS + A + +D GH P I + I A ++ V +L ++ D Sbjct: 231 DWGS-ALLLAQALGERAQCLVDLGHHLPNTNI-ELIVARLIGVGKLGGFHFNDAKYGDDD 288 Query: 298 VVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPT 357 + + + +V ++L D G+ F A++I + K + ALL+ Sbjct: 289 LTAGSIKPYQLF--LVFNELVDAAREGVPGFRP------AYMIDQSHNVKDPIEALLQTV 340 Query: 358 AELRKLEAAGDYTARLALLEEQKS 381 L++ A R AL Q++ Sbjct: 341 DHLQRAYARALLVDREALSHYQET 364 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7FN82 L-rhamnose isomerase n=32 Tax=Bacteria RepID=RHA... 605 e-171 UniRef50_Q5WL39 L-rhamnose isomerase n=226 Tax=Bacteria RepID=RH... 579 e-164 UniRef50_Q8A1A2 L-rhamnose isomerase n=34 Tax=Bacteria RepID=RHA... 558 e-157 UniRef50_B0P6A7 Putative uncharacterized protein n=1 Tax=Anaerot... 536 e-151 UniRef50_Q1AVD7 Rhamnose isomerase related n=40 Tax=Bacteria Rep... 348 2e-94 UniRef50_Q98B65 Probable sugar isomerase mlr5709 n=20 Tax=cellul... 340 6e-92 UniRef50_B9JIX6 L-rhamnose catabolism isomerase n=14 Tax=Proteob... 329 1e-88 UniRef50_C8WTK9 L-rhamnose isomerase n=13 Tax=Bacteria RepID=C8W... 322 2e-86 UniRef50_D0MFR3 Xylose isomerase domain protein TIM barrel n=17 ... 318 2e-85 Sequences not found previously or not previously below threshold: UniRef50_D1CHD1 L-rhamnose isomerase n=5 Tax=Bacteria RepID=D1CH... 300 8e-80 UniRef50_Q01TX1 Xylose isomerase domain protein TIM barrel n=3 T... 203 1e-50 UniRef50_UPI00019065F1 putative sugar isomerase protein n=1 Tax=... 126 2e-27 UniRef50_C0A4A5 Xylose isomerase n=2 Tax=Opitutaceae bacterium T... 82 3e-14 UniRef50_Q161W0 Xylose isomerase n=9 Tax=Proteobacteria RepID=Q1... 66 2e-09 UniRef50_D0KFY0 Xylose isomerase n=7 Tax=Bacteria RepID=D0KFY0_P... 58 8e-07 UniRef50_A5Z739 Putative uncharacterized protein n=1 Tax=Eubacte... 57 1e-06 UniRef50_B7FX84 Ribokinase n=1 Tax=Phaeodactylum tricornutum CCA... 56 2e-06 UniRef50_B8HA51 Xylose isomerase n=23 Tax=Actinobacteria (class)... 56 3e-06 UniRef50_C8S5N3 Xylose isomerase n=1 Tax=Rhodobacter sp. SW2 Rep... 55 7e-06 UniRef50_Q1AZ02 Xylose isomerase n=3 Tax=Bacteria RepID=Q1AZ02_R... 52 4e-05 UniRef50_A3TT39 Xylose isomerase n=1 Tax=Oceanicola batsensis HT... 50 1e-04 UniRef50_C9AXF9 AP endonuclease n=3 Tax=Firmicutes RepID=C9AXF9_... 49 3e-04 UniRef50_A0AFB3 Complete genome n=2 Tax=Bacteria RepID=A0AFB3_LISW6 49 3e-04 UniRef50_B9XG89 Xylose isomerase n=2 Tax=Verrucomicrobiales RepI... 47 0.002 UniRef50_A5CPC1 Xylose isomerase n=67 Tax=Bacteria RepID=XYLA_CLAM3 47 0.002 UniRef50_A0LJR2 Xylose isomerase domain protein TIM barrel n=1 T... 44 0.015 >UniRef50_A7FN82 L-rhamnose isomerase n=32 Tax=Bacteria RepID=RHAA_YERP3 Length = 418 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 356/418 (85%), Positives = 391/418 (93%) Query: 1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQ 60 MT +EQAW+LAKQRFAAVG+DV+ AL +LD LPVSMHCWQGDDV+GFE+P+G LTGGIQ Sbjct: 1 MTNSIEQAWDLAKQRFAAVGVDVDAALTRLDTLPVSMHCWQGDDVTGFEDPDGVLTGGIQ 60 Query: 61 ATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVE 120 ATGNYPGKARNA+ELR+DLE A+ LIPGPKRLNLHAIYLESDTPV+R++I+P HF +WV Sbjct: 61 ATGNYPGKARNATELRSDLELALALIPGPKRLNLHAIYLESDTPVARNKIEPRHFSHWVA 120 Query: 121 WAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS 180 WAK +QLGLDFNPSCFSHPLSADGFTLSHAD IRQFWI+HC+ASRR+SAYFGEQLGTPS Sbjct: 121 WAKKHQLGLDFNPSCFSHPLSADGFTLSHADPEIRQFWIEHCQASRRISAYFGEQLGTPS 180 Query: 181 VMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240 VMNIWIPDGMKD +DRLAPRQRLL+ALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG Sbjct: 181 VMNIWIPDGMKDTPIDRLAPRQRLLSALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240 Query: 241 SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVL 300 SNEFYMGYA SRQTALCLDAGHFHPTEVISDKIS+AMLYVP+LLLHVSRPVRWDSDHVVL Sbjct: 241 SNEFYMGYAASRQTALCLDAGHFHPTEVISDKISSAMLYVPRLLLHVSRPVRWDSDHVVL 300 Query: 301 LDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAEL 360 LDDETQAIASEI+RH+LFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPT L Sbjct: 301 LDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTDRL 360 Query: 361 RKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 R+LE GDYTARLALLEEQKSLPWQA+WE YCQR+D P + WL++VR YE++ILS+R Sbjct: 361 RQLELRGDYTARLALLEEQKSLPWQAIWEGYCQRNDVPVDARWLDAVREYEQQILSQR 418 >UniRef50_Q5WL39 L-rhamnose isomerase n=226 Tax=Bacteria RepID=RHAAB_BACSK Length = 894 Score = 579 bits (1492), Expect = e-164, Method: Composition-based stats. Identities = 233/418 (55%), Positives = 313/418 (74%), Gaps = 1/418 (0%) Query: 2 TTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQA 61 + + +E AK ++ +GIDVE A ++ ++P+S+HCWQGDD+ G E L+GGI Sbjct: 469 ESHVSSRFESAKVQYEQLGIDVEAAFAKVKQVPISVHCWQGDDLHGTEVIANELSGGIDV 528 Query: 62 TGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDT-PVSRDQIKPEHFKNWVE 120 TGN+PG+ARN ELR DLE+A+ LIPG R+NLHA+Y E+D+ P+ RDQ+K EHF+ WV+ Sbjct: 529 TGNHPGRARNGEELRRDLEKALSLIPGKHRVNLHAMYAETDSVPIERDQLKTEHFEKWVK 588 Query: 121 WAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS 180 WAK+ +GLDFNP+ FSHP +ADG TL+H D+ IR FWI+HCKA R+++AYFGEQLGTPS Sbjct: 589 WAKSLGIGLDFNPTVFSHPKAADGLTLAHPDEEIRTFWINHCKACRKIAAYFGEQLGTPS 648 Query: 181 VMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240 ++NIW+PDG KD DRL PR+RL +LD + +++ +P +D VESKLFGIG+E+Y VG Sbjct: 649 LVNIWVPDGYKDTPSDRLTPRKRLKESLDAIYADEYDPMLVLDTVESKLFGIGSEAYVVG 708 Query: 241 SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVL 300 S+EFY+ YA LD GHFHPTEV+S+K+SA +L+ QL LHVSRPVRWDSDHVV Sbjct: 709 SHEFYLNYANQNNKLYLLDTGHFHPTEVVSNKLSAMLLFHDQLALHVSRPVRWDSDHVVT 768 Query: 301 LDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAEL 360 DDE + IA E+VR+D +HIGLDFFDASINR+AAW IGTRNM KALL A L P L Sbjct: 769 FDDELREIAIELVRNDALGNIHIGLDFFDASINRVAAWAIGTRNMAKALLYAALMPHRHL 828 Query: 361 RKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 ++L+ GD+T+RLA+ E+ K+ P+ +W+ YC+R P +EWL+ V+ YE+++ +R Sbjct: 829 KQLQDEGDFTSRLAMQEQLKTYPFGDMWDEYCKRQGVPTETEWLDVVKEYEQQVQLKR 886 >UniRef50_Q8A1A2 L-rhamnose isomerase n=34 Tax=Bacteria RepID=RHAA_BACTN Length = 418 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 225/418 (53%), Positives = 303/418 (72%), Gaps = 4/418 (0%) Query: 2 TTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQA 61 +++A+E+A +R+AAVG+D E+ L+ + +S+HCWQ DDV+GFE G+L+GGIQA Sbjct: 4 EEMIQKAYEIAVERYAAVGVDTEKVLKTMQDFHLSLHCWQADDVTGFEVQAGALSGGIQA 63 Query: 62 TGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLE-SDTPVSRDQIKPEHFKNWVE 120 TGNYPGKARN ELRAD+ +A IPG RLNLH IY + V RDQ++PEHFK+W+E Sbjct: 64 TGNYPGKARNIDELRADILKAASYIPGTHRLNLHEIYGDFQGKVVDRDQVEPEHFKSWIE 123 Query: 121 WAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS 180 W K + + LDFN + FSHP S D +LS+ D+ IRQFWI+H K R V+ G+ G P Sbjct: 124 WGKEHNMKLDFNSTSFSHPKSGD-LSLSNPDEGIRQFWIEHTKRCRAVAEEMGKAQGDPC 182 Query: 181 VMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVG 240 +MN+W+ DG KDITV+R+ R L +LD++ + + D +ESK+FGIG ESYTVG Sbjct: 183 IMNLWVHDGSKDITVNRMKYRALLKDSLDQIFATEYKNMK--DCIESKVFGIGLESYTVG 240 Query: 241 SNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVL 300 SN+FY+GY SR + LD GHFHPTE ++DK+S+ +LYVP+L+LHVSRPVRWDSDHV + Sbjct: 241 SNDFYIGYGASRNKMVTLDTGHFHPTESVADKVSSLLLYVPELMLHVSRPVRWDSDHVTI 300 Query: 301 LDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAEL 360 +DD T + SEIVR +RVH GLD+FDASINRI A+VIG+R +K + RALLEP A+L Sbjct: 301 MDDPTMELFSEIVRCGALERVHYGLDYFDASINRIGAYVIGSRAAQKCMTRALLEPIAKL 360 Query: 361 RKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418 R+ EA G RLALLEE+K+LPW AVW+M+C +++ P G +++ + YE E+ S+R Sbjct: 361 REYEANGQGFQRLALLEEEKALPWNAVWDMFCLKNNVPVGEDFIAEIEKYEAEVTSKR 418 >UniRef50_B0P6A7 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6A7_9FIRM Length = 406 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 195/402 (48%), Positives = 288/402 (71%), Gaps = 3/402 (0%) Query: 5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGN 64 + + +E A++ +A+ G+D EEA+R++D +P+S++CWQ DD++GFE+ + LTGGIQATGN Sbjct: 1 MSKHYETAREIYASWGVDTEEAIRRMDEIPLSINCWQLDDLTGFEDFDAQLTGGIQATGN 60 Query: 65 YPGKARNASELRADLEQAMRLIPGPKRLNLHAIY-LESDTPVSRDQIKPEHFKNWVEWAK 123 PGK R+ E +L++ + L+PG K L LH++Y L + + RD+++PEHF W+++A+ Sbjct: 61 APGKPRSIEEYFTNLDKMLSLVPGAKHLALHSVYPLTNGVKIPRDELRPEHFAPWIDYAR 120 Query: 124 ANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMN 183 +GLDFNP+ FSHP+ DG+TL+ D +R FWI H A R++ FG+ LG + N Sbjct: 121 EKGIGLDFNPTYFSHPMLKDGWTLASPDKGVRDFWIQHGIACRKIGESFGKALGETCITN 180 Query: 184 IWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNE 243 WIPDG KD VD L PR+RL+ +L+++ +E ++P ++ D+VE K+FG+G ESYTVGS++ Sbjct: 181 HWIPDGSKDTRVDMLGPRERLIDSLNQIFAEFIDPKYNRDSVEGKVFGLGVESYTVGSHD 240 Query: 244 FYMGYA-TSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLD 302 FY Y T+ + +C+D GH+HPTE ++DK+S+ + + +++ H+SR VRWDSDHV ++ Sbjct: 241 FYANYVLTTGKAMVCMDIGHYHPTESVADKLSSYLAFNQEIMTHLSRGVRWDSDHVAVVS 300 Query: 303 DETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRK 362 +E AI +I R + FD+VH+GLDFFDASI+RIAA VIG+R++KK L+ ALLEPT L K Sbjct: 301 EEIVAIMQQIKRCNAFDKVHLGLDFFDASIDRIAASVIGSRSVKKCLMTALLEPTERLMK 360 Query: 363 LEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWL 404 EA D T RLAL EE K LP V++ YC+RH A S W+ Sbjct: 361 AEAQEDLTRRLALQEEFKMLPAGIVFDEYCERHGVKA-SNWM 401 >UniRef50_Q1AVD7 Rhamnose isomerase related n=40 Tax=Bacteria RepID=Q1AVD7_RUBXD Length = 405 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 144/392 (36%), Gaps = 48/392 (12%) Query: 1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCW-QGDDVSGFENPEGSLTGGI 59 M + QA+E ++ A G+D+ +L V W G+ + F Sbjct: 1 MEATVRQAYEAFRETQAERGVDLAGVEERLRAQRVETPSWGYGNSGTRFAVFP------- 53 Query: 60 QATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWV 119 PG RN E D Q + LH + D + E ++ Sbjct: 54 -----QPGVPRNPFEKLQDAAQVHAHTGICPSVALH---------IPWDAV--EDYRELA 97 Query: 120 EWAKANQLGLD-FNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGT 178 ++A + L L NP+ F G ++ + D ++R+ DH ++ G + Sbjct: 98 DYAGSLGLRLGAINPNLFQEEDYRLG-SVCNPDPAVRRRATDHLLECVEIAGEVGSR--- 153 Query: 179 PSVMNIWIPDGMKDITVD-RLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESY 237 V+++W+ DG D + R R+L L EV + +E KLF Y Sbjct: 154 --VLSLWLADGTNYPGQDSFVERRGRMLECLSEVYGRMPEDMRLL--LEYKLFEPAF--Y 207 Query: 238 TVGSNEFY----MGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQL-LLHVSRPVR 292 ++ M + + +D GH H V + I + +L +L H + Sbjct: 208 HTDLCDWGCALTMCQKLGERALVLVDLGH-HAQGVNVEHIVSLLLDEGRLGGFHFNNRKY 266 Query: 293 WDSDHVV--LLDDETQAIASEIVRHD--LFDRVHIGLDFFDASINRIAAWVIGTRNMKKA 348 D D VV + E I E++ + R+ +D +I A ++ N+++A Sbjct: 267 ADDDLVVGSINPFELFLIYVELLEAEEDPGVRIEYMIDQAHNIEPKIEAMILSVMNLQEA 326 Query: 349 LLRALLEPTAELRKLEAAGD--YTARLALLEE 378 +ALL LR+ +GD RL L Sbjct: 327 YAKALLVDREALREARLSGDVLGAHRLLLEAY 358 >UniRef50_Q98B65 Probable sugar isomerase mlr5709 n=20 Tax=cellular organisms RepID=RHAL_RHILO Length = 430 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 144/383 (37%), Gaps = 54/383 (14%) Query: 5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGN 64 LE+ + +R GI ++ ++++ V++ W G TGG + Sbjct: 22 LERDYASLGERLDRRGIAIDAIRAKVEKFAVAIPSW------------GVGTGGTRF-AR 68 Query: 65 YPG--KARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWA 122 +PG + R+ + D +L ++LH + D+ P K + A Sbjct: 69 FPGAGEPRDIFDKIEDCAVISQLTQATPTVSLH---------IPWDKADPNRLK---QAA 116 Query: 123 KANQLGLD-FNPSCFS----HPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLG 177 LG D N + FS LS +LSHAD R+ ++H + G+ LG Sbjct: 117 SRFGLGFDAMNSNTFSDARDQKLSYKFGSLSHADAGTRRQAVEHNLECIEI----GKTLG 172 Query: 178 TPSVMNIWIPDGMK-DITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAES 236 + ++ +WI DG V+ +R L A+ V + PA E K++ S Sbjct: 173 SKALT-VWIGDGSNFPGQVNFARAFERYLDAMKAVYAGL--PADWKLFTEHKMYEPAFYS 229 Query: 237 YTV---GSNEFYMGYATSRQTALCL-DAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVR 292 V G+N Y+ A CL D GH P I +S + + H + Sbjct: 230 TVVQDWGTN--YLIAKELGDRAFCLVDLGHHAPNVNIEMIVSRLIQFKKLGGFHFNDSKY 287 Query: 293 WDSDHVVLLDDE--TQAIASEIVRHDL-----FDRVHIGLDFFDASINRIAAWVIGTRNM 345 D D D + +E+V +L FD H LD + I + ++ + Sbjct: 288 GDDDLDAGSIDPYRLFLVFNELVDAELSGAEGFDPAH-MLDQSHNVTDPIESLMLSAVEV 346 Query: 346 KKALLRALLEPTAELRKLEAAGD 368 ++A +ALL L + D Sbjct: 347 QRAYAQALLVDRKALEGFQDGND 369 >UniRef50_B9JIX6 L-rhamnose catabolism isomerase n=14 Tax=Proteobacteria RepID=B9JIX6_AGRRK Length = 430 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 68/384 (17%), Positives = 134/384 (34%), Gaps = 52/384 (13%) Query: 3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQAT 62 L +E A GID+E +++ V++ W G TGG + Sbjct: 20 AALTSDYEALGATLARRGIDIENITKKVSEFFVAIPSW------------GVGTGGTRF- 66 Query: 63 GNYPG--KARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVE 120 +PG + R + D +L ++LH + D+ + + Sbjct: 67 ARFPGTGEPRGIFDKLDDCAVINQLTRATPNVSLH---------IPWDKADARELRAKGD 117 Query: 121 WAKANQLGLD-FNPSCFS----HPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQ 175 A LG D N + FS S +LSH D + R ++H + G+ Sbjct: 118 ---ALGLGFDAMNSNTFSDAPGQAHSYKYGSLSHVDAATRAQAVEHNLECIEI----GKA 170 Query: 176 LGTPSVMNIWIPDGMK-DITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGA 234 +G+ ++ +W+ DG + +R LAA+ ++ + E K++ Sbjct: 171 IGSKALT-VWVGDGSNFPGQSNFTRAFERYLAAMADIYKALPDDWRLFS--EHKMYEPAF 227 Query: 235 ESYTV---GSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPV 291 S V G+N + + + +D GH P I ++ + + H + Sbjct: 228 YSSVVQDWGTN-YLIAQTLGPKAQCLVDLGHHAPNTNIEMIVARLIQFGKLGGFHFNDSK 286 Query: 292 RWDSDHV--VLLDDETQAIASEIVRHDL-----FDRVHIGLDFFDASINRIAAWVIGTRN 344 D D + + +E++ + F+ H +D + I + + Sbjct: 287 YGDDDLDAGAIEPYRLFLVFNELIDAEQRGVNDFNPAH-MIDQSHNVTDPIESLISSANE 345 Query: 345 MKKALLRALLEPTAELRKLEAAGD 368 +++A +AL+ L + D Sbjct: 346 IRRAYAQALIVDRKALAGYQDTND 369 >UniRef50_C8WTK9 L-rhamnose isomerase n=13 Tax=Bacteria RepID=C8WTK9_ALIAD Length = 409 Score = 322 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 148/385 (38%), Gaps = 53/385 (13%) Query: 3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCW-QGDDVSGFENPEGSLTGGIQA 61 ++++QA+ L + G+D++ A R+L L V W GD + F+ Sbjct: 2 SRMDQAYALLEAECRDRGVDLDAAARRLAALEVETPSWGYGDSGTRFKVF---------- 51 Query: 62 TGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEW 121 PG RNA E D RL + +H + D++ + ++ + Sbjct: 52 --RQPGVPRNAFEKIDDAAVVHRLTGACPSVAIH---------IPWDRV--DDYRALADH 98 Query: 122 AKANQLGLD-FNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPS 180 A L + NP+ F G ++++ IR+ I H V + Sbjct: 99 AHNQGLRIGAVNPNLFQDDDYMLG-SITNVKPEIRRKAIQHILECVDVMREV-----RSN 152 Query: 181 VMNIWIPDGMKDITVDRLAPRQR-LLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTV 239 V+++W+PDG + R+R L AL E+ + L+P + +E K F Y Sbjct: 153 VLSLWVPDGTNYPGQGDIRRRKRWLEEALREIY-DALDPDMRL-LIEYKFFEPAF--YHT 208 Query: 240 GSNEFYMGYATSR----QTALCLDAGHFHPTEVISDKISAAMLYVPQLL-LHVSRPVRWD 294 ++ M Y + Q + +D GH HP + I A +L +L H + D Sbjct: 209 DLADWGMAYLAAEKLGPQAQVLVDTGH-HPQGTNVEHIVAVLLDEGRLGGFHFNSRKYAD 267 Query: 295 SDHVV--LLDDETQAIASEIVRHDLFDR---------VHIGLDFFDASINRIAAWVIGTR 343 D +V + E I +I+ + D + +D A +I A + Sbjct: 268 DDLIVGAIQPYELFLIFCQILEAERSDDERVAATARAIAYMIDQSHAVEPKIPAMIRSVC 327 Query: 344 NMKKALLRALLEPTAELRKLEAAGD 368 N++ +ALL P LR+ + D Sbjct: 328 NIQTQFAKALLIPWDLLRERQKQND 352 >UniRef50_D0MFR3 Xylose isomerase domain protein TIM barrel n=17 Tax=Bacteria RepID=D0MFR3_RHOM4 Length = 428 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 139/390 (35%), Gaps = 50/390 (12%) Query: 2 TTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQA 61 + E +R A GI +E L +L V++ W ++ G Sbjct: 15 EAAHRRDLEYLAERLARSGIALEVVLDELATFEVALPTW-------------AMAAGGTR 61 Query: 62 TGNYP--GKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWV 119 G +P G+ R E D +L R++ H D + + + Sbjct: 62 FGRFPIPGEPRTIFEKLEDAAVIHQLTRATPRVSPH---------FPWDVV--DDWAALR 110 Query: 120 EWAKANQLGLD-FNPSCFS----HPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGE 174 A+A LG D N + F P S +LSHAD ++R+ I H +G+ Sbjct: 111 AHAEALGLGFDAVNSNTFQDQPGQPHSYKLGSLSHADPAVRRQAIAHNLQVVA----WGQ 166 Query: 175 QLGTPSVMNIWIPDGMKDITVDRLAP-RQRLLAALDEVISEKLNPAHHIDAVESKLFGIG 233 +LG+ ++ +W+ DG L +R+ +L E+ + P +E K + Sbjct: 167 ELGSTALT-VWLADGSNYPGQMHLRRSFERVQESLAEIYAAL--PEGWRMLIEYKPYEPA 223 Query: 234 AESYTVGS--NEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPV 291 + + + + A + +D GH P I ++ + H + Sbjct: 224 FYATVIQDWGSALLLAQALGERAQCLVDLGHHLPNTNIELIVARLIGVGKLGGFHFNDAK 283 Query: 292 RWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLR 351 D D + + +V ++L D G+ F A++I + K + Sbjct: 284 YGDDDL-TAGSIKPYQLF--LVFNELVDAAREGVPGFRP------AYMIDQSHNVKDPIE 334 Query: 352 ALLEPTAELRKLEAAGDYTARLALLEEQKS 381 ALL+ L++ A R AL Q++ Sbjct: 335 ALLQTVDHLQRAYARALLVDREALSHYQET 364 >UniRef50_D1CHD1 L-rhamnose isomerase n=5 Tax=Bacteria RepID=D1CHD1_THET1 Length = 408 Score = 300 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 70/380 (18%), Positives = 129/380 (33%), Gaps = 46/380 (12%) Query: 5 LEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCW-QGDDVSGFENPEGSLTGGIQATG 63 L+++++ + R GIDV+ +L V W G+ + F+ Sbjct: 6 LDRSYQELRGRLEEKGIDVDGVEAKLRAQRVETPSWAYGNSGTRFKVFP----------- 54 Query: 64 NYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAK 123 PG RN E D Q R + +H + D++ + + +A Sbjct: 55 -QPGVPRNPFEKFEDAAQVHRHTGICPSVAVH---------IPWDKV--DDYGELASFAG 102 Query: 124 ANQLGLD-FNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVM 182 + + + NP+ F G +++H D +R+ DH + G + Sbjct: 103 SLGMRIGAINPNLFQDEDYKLG-SVTHPDPRVRRKATDHLLECIEIGRQVGSD-----IQ 156 Query: 183 NIWIPDGMKDITVD-RLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGS 241 ++W DG D + R R+L L E + P +E K + Y Sbjct: 157 SLWFADGTNYAGQDSFVERRHRMLECLREAYAAM--PEGMRMLLEYKFYEPAF--YHTDL 212 Query: 242 NEFY----MGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDH 297 ++ M + + +D GH + ++ + H + D D Sbjct: 213 ADWGQSLLMCQKLGDRAQVLVDLGHHALGTNVEQIVATLLDEDRLGGFHFNARRYGDDDL 272 Query: 298 VV--LLDDETQAIASEIVRHD----LFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLR 351 +V E I E+V + DRV +D +I +I ++++ R Sbjct: 273 IVGSTNPFELFLIYVELVDAERRGARVDRVAYMIDQSHNIEPKIEGMIISVMQLQESYAR 332 Query: 352 ALLEPTAELRKLEAAGDYTA 371 AL+ EL +GD Sbjct: 333 ALVVDWRELEDARRSGDVLR 352 >UniRef50_Q01TX1 Xylose isomerase domain protein TIM barrel n=3 Tax=Bacteria RepID=Q01TX1_SOLUE Length = 397 Score = 203 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 69/413 (16%), Positives = 126/413 (30%), Gaps = 49/413 (11%) Query: 23 VEEALRQLDRLPVSMHCW-QGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQ 81 + +R LD + + W + + F P A + + AD Q Sbjct: 7 TDTIIRALDAFHIELPSWGFANTGTRFGKFL------------QPAAATSTEDKFADAGQ 54 Query: 82 AMRLIPGPKRLNLHAIYLESDTPVSRDQIK-PEHFKNWVEWAKANQLGLD-FNPSCFSHP 139 RL + LH + D A + L NP+ F Sbjct: 55 VHRLTGVCPTVALHVL---------WDLPNGAADCAGVQAMAAEHGLRPGAINPNVFQDQ 105 Query: 140 LSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLA 199 G ++ + D +IR+ +DH S + G + +++W DG + Sbjct: 106 NYKYG-SIGNPDPAIRKEAMDHILTSVEIQKKLGSRD-----LSLWFADGSNYPGTQNMR 159 Query: 200 PRQR-LLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMG----YATSRQT 254 R+R L + + VE K F Y ++ M Q Sbjct: 160 HRRRWFAEGLQQTHAALAG--GQRMLVEYKPFEPAF--YHTDIADWGMALVLAQTAGPQA 215 Query: 255 ALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDET--QAIASEI 312 + +D GH + + I ++ + H + D D + D I EI Sbjct: 216 KVLVDTGHHYQGQNIEQIVAWLLDMDMLGGFHFNDRRYADDDLTMGSIDPYQVFRIFHEI 275 Query: 313 V----RHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGD 368 + +D +I A + + +A L +L + A Sbjct: 276 AHFEWETGKRADIAYMIDQSHNLKGKIEAMIQTVTTAMELYAKAALVDHKKLAACQTACA 335 Query: 369 YTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRA--YEKEILSRRG 419 L++ S + V + PA + +++ R Y ++I + RG Sbjct: 336 LVDAETCLKDAFSTDVRPVIREWAVSKGLPADA--MDAFRQSGYLEKITAERG 386 >UniRef50_UPI00019065F1 putative sugar isomerase protein n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019065F1 Length = 256 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 14/145 (9%) Query: 235 ESYTV---GSNEFYMGYATSRQTALCL-DAGHFHPTEVISDKISAAMLYVPQLLLHVSRP 290 S V G+N Y+ T A CL D GH P I ++ + + H + Sbjct: 1 YSTIVQDWGTN--YLIAQTLGPKAYCLVDLGHHAPNTNIEMIVARLIQFGKLGGFHFNDS 58 Query: 291 VRWDSDHVVLLDDE--TQAIASEIVRHDL-----FDRVHIGLDFFDASINRIAAWVIGTR 343 D D D + +E+V + F+ H +D + I + + Sbjct: 59 KYGDDDLDAGSIDPYRLFLVFNELVDAEQRGVNDFNPAH-MIDQSHNVTDPIESLINSAN 117 Query: 344 NMKKALLRALLEPTAELRKLEAAGD 368 +++A +AL+ L + D Sbjct: 118 EIRRAYAQALIVDRKALEGYQNDND 142 >UniRef50_C0A4A5 Xylose isomerase n=2 Tax=Opitutaceae bacterium TAV2 RepID=C0A4A5_9BACT Length = 328 Score = 82.2 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 97/250 (38%), Gaps = 24/250 (9%) Query: 133 PSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP-DGMK 191 P FS G +LS R+ ++ C+A R++ +Q+G P ++N+W+ DG Sbjct: 78 PDLFSQKRWGLG-SLSAKSADTRRQALEECRAVSRIA----QQIGCP-LINLWLGQDGYD 131 Query: 192 DI-TVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYAT 250 T D R L + + SE A+E K S+ + + + Sbjct: 132 YPLTADYRTQRAHLAENIHAIASEYPE---IRYALEYKPKEPRNFSFHARAADTLLMANE 188 Query: 251 SR--QTALCLDAGH-FHPTEVISDKISAAMLYVPQLL-LHVSRPVR-WDSDHVVLLDD-- 303 + +C+D GH F E +++ Y +L +H + R WD D +V Sbjct: 189 TGLENVGVCIDVGHAFMAGENVAESAVLLQHYGGKLFHMHFNDNYRSWDDDMIVGSVHCV 248 Query: 304 ETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEP--TAELR 361 E + + + +D + + AA ++ L ALL LR Sbjct: 249 EYLELLHWLREINYTG--WYSMDQYPYREDGPAAVRESVAFLRD--LEALLTDARRVALR 304 Query: 362 KLEAAGDYTA 371 +L AAGD TA Sbjct: 305 QLIAAGDATA 314 >UniRef50_Q161W0 Xylose isomerase n=9 Tax=Proteobacteria RepID=Q161W0_ROSDO Length = 328 Score = 66.4 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 101/277 (36%), Gaps = 26/277 (9%) Query: 108 DQIKPEHF-----KNWVEWAKANQLGL-DFNPSCFSHPLSADGFTLSHADDSIRQFWIDH 161 D P+HF E + N + L ++ P G +H D S+R+ ID Sbjct: 48 DLNYPDHFVSDTPAQLTEALQGNGMVLNGMAMRYYTDPGYKLG-AFTHPDASVRRAAIDE 106 Query: 162 CKASRRVSAYFGEQLGTPSVMNIWIP-DGMKDI-TVDRLAPRQRLLAALDEVISEKLNPA 219 K V A G +L M +W+ DG +D + A+ EV NP Sbjct: 107 TKRGLDVLAQMGGRL-----MTLWMGQDGFDYSFQMDYTRAWDHTITAITEV--ADHNPT 159 Query: 220 HHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQ--TALCLDAGHFHPTEVISDKISAAM 277 I A+E K A + + + + T + LD H + + +A + Sbjct: 160 LDI-ALEYKPNEPRAFALMPDAATTLLALREVDRPNTGVTLDFAHVLYADEMPAFAAALV 218 Query: 278 LYVPQ-LLLHVSRPV-RWDSDHVV--LLDDETQAIASEIVRHDLFDRVHIGLDFFDASIN 333 + L +H++ +WD+ +V + +T + E+ R ++ + ++ Sbjct: 219 ARHSRILGVHLNDGYGKWDNGLMVGAVHPVQTIELLVELTRAGYDGAIYFDTFPDHSGLD 278 Query: 334 RIAAWV--IGTRNMKKALLRALLEPTAELRKLEAAGD 368 +A I N +A+ + L L+ A D Sbjct: 279 PVAEARTNIDVVNRLRAIAQGLAGDAD-LQAAIARQD 314 >UniRef50_D0KFY0 Xylose isomerase n=7 Tax=Bacteria RepID=D0KFY0_PECWW Length = 332 Score = 57.5 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 75/261 (28%), Gaps = 21/261 (8%) Query: 115 FKNWVEWAKANQLG-LDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFG 173 + K L + P + S ++ D + R + S + G Sbjct: 62 LSEVKDALKDAGLKAIGITPEIYLQKWSR--GAFTNPDPAARAAAFELMHESAGIVRELG 119 Query: 174 EQLGTPSVMNIWIP-DGMKDITVDRLAPRQRL-LAALDEVISEKLNPAHHIDAVESKLFG 231 + + +W DG +L + + ++ + A+E K Sbjct: 120 -----ANYVKVWPGQDGWDYPFQVSHKNLWKLAVDGMRDLAGANPD---VKFAIEYKPRE 171 Query: 232 IGAESYTVGSNEFYMGYATSR--QTALCLDAGHFHPTEVISDKISAAMLYVPQL-LLHVS 288 + + +G + LD GH + ++ +L + V+ Sbjct: 172 PRVKMTWDSAARTLLGIEDIGLDNVGVLLDFGHALYGGESPADSAQLIIDRGRLFGMDVN 231 Query: 289 RPVR-WDSDHVVLLDD--ETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNM 345 +R WD D VV E + ++ LD F N + A + R + Sbjct: 232 DNLRGWDDDLVVGTVHMTEIFEFFYVLKINNWQGVWQ--LDQFPFRENHVEAAQLSIRFL 289 Query: 346 KKALLRALLEPTAELRKLEAA 366 K L+ + A Sbjct: 290 KHIYRALDKLDIPALQAAQEA 310 >UniRef50_A5Z739 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z739_9FIRM Length = 306 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 14/185 (7%) Query: 112 PEHFKNWVEWAKANQLG-LDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSA 170 PEHF + +G L N L++ D +R+ I +CK + + Sbjct: 38 PEHFAGYDLEEIKKAMGDLKVNGLAVRWRNDFTNGDLTNPDPELRERAIRYCKEATDICR 97 Query: 171 YFGEQLGTPSVMNIWIP-DGMKDI-TVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESK 228 G + +W+ DG VD +++ A E+ + + ++E K Sbjct: 98 ELGGTY-----ITLWLENDGFDYAFQVDYEEAWNQMIDAFRELADYAPDMKY---SIEYK 149 Query: 229 LFGIGAESYT--VGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQL-LL 285 F S G + + LD H A + +L L Sbjct: 150 PFEPRNFSMVDSTGMTLLLIKEIDRQNVGCTLDFCHMLMKRDSPAYGLALAASMGKLYGL 209 Query: 286 HVSRP 290 H++ Sbjct: 210 HMNDG 214 >UniRef50_B7FX84 Ribokinase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FX84_PHATR Length = 709 Score = 56.4 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 60/281 (21%), Positives = 98/281 (34%), Gaps = 24/281 (8%) Query: 112 PEHFKNWV--EWAKANQL-GLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRV 168 P+HF W E AK+ ++ GL C +P +++ D +RQ I+ K Sbjct: 434 PQHFHTWSNEEAAKSLEMAGLRAGAVCLRYPSKFARGAMNNPDYELRQEAIELTKH---- 489 Query: 169 SAYFGEQLGTPSVMNIWIP-DGMKDI-TVDRLAPRQRLLAALDEVISEKLNPAHHIDAVE 226 +A LG V+ IW DG VD L+ A E + +VE Sbjct: 490 AAQMARDLGAKEVV-IWSAYDGYDYPFQVDYDEKWDELVGAFRECCDAYPD---IRFSVE 545 Query: 227 SKLFGIGAESYTV---GSNEFYMGYATSRQTALCLDAGHFH-----PTEVISDKISAAML 278 K +T+ G+ + + L LD GH P + I+ A L Sbjct: 546 YKPTDENTRFFTIPSTGAALLMVNEVDRQNFGLTLDVGHMLMSGENPGQSIAMVGRAGKL 605 Query: 279 YVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEI-VRHDLFDRVHIGLDFFDASINRIAA 337 + QL +R + + + A+ +R FD H D F + + Sbjct: 606 FGVQLNDGFTRLA-AEDGLMFGSVHPSMALEIMYQLRRTKFDG-HFYFDTFPQRSDPVRE 663 Query: 338 WVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEE 378 R +K A L+++ D L L+++ Sbjct: 664 AEYNIRRVKAFWYAASSMDADRLKRVMDEHDAIGALELVDD 704 >UniRef50_B8HA51 Xylose isomerase n=23 Tax=Actinobacteria (class) RepID=XYLA_ARTCA Length = 395 Score = 56.0 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 62/331 (18%), Positives = 111/331 (33%), Gaps = 38/331 (11%) Query: 76 RADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEH---FKNWVEWAKANQLGLDF- 131 +E +L L + I + V D E KN+ L + Sbjct: 34 LDPVEAVHKLS----ELGAYGITFHDNDLVPFDAPASERELILKNFRAALADTGLKVPMV 89 Query: 132 NPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP-DGM 190 + FSHP+ DG S+ D S+R+F + + ++A G + +W +G Sbjct: 90 TTNLFSHPVFKDGGFTSN-DRSVRRFALSKVLRNIDLAAELGAE-----TFVMWGGREGS 143 Query: 191 K-DITVDRLAPRQRLLAALDEVISEKLNPAH-HIDAVESKLFGIGAESY--TVGSNEFYM 246 + D + D A R+ +D + + A+E K + + TVG ++ Sbjct: 144 EYDGSKDLAAALDRMKEGVDTAAGYIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFI 203 Query: 247 GYATSRQTALC-LDAGHFHPTEVISDKISAAMLYVPQLLLHVS----RPVRWDSDHVVLL 301 + GH + A L+ +L H+ R +++D D V Sbjct: 204 AQLEHGDIVGLNPETGHEQMAGLNFTHGIAQALWAGKL-FHIDLNGQRGIKYDQDLVFGH 262 Query: 302 DDETQAIA-SEIVRHDL--FDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTA 358 D T A +++ + + G FD +R + + K + LL Sbjct: 263 GDLTSAFFTVDLLENGFPGGGPKYDGPRHFDYKPSRTDGYDGVWESAKANMAMYLLLKER 322 Query: 359 ELRKLEAAGDYTARLALLEEQKSLPWQAVWE 389 L E Q++L V+E Sbjct: 323 ALAFRADP----------EVQEALAASGVFE 343 >UniRef50_C8S5N3 Xylose isomerase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N3_9RHOB Length = 331 Score = 54.8 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 84/247 (34%), Gaps = 20/247 (8%) Query: 135 CFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP-DGMKDI 193 +++P G ++ D ++RQ ID K + +M +W+ DG Sbjct: 79 YYTNPAYKLG-AFTNPDRAVRQEAIDLTKRGIDAARAM-----DAPMMTLWLGQDGYDYA 132 Query: 194 TV-DRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSR 252 D A Q + + EV + + ++E K A S + + A Sbjct: 133 FQCDYAALWQDEIDGIAEVAAHDPDCM---ISIEYKPNEPRAYSILCDAATTLLAIAEVG 189 Query: 253 QT--ALCLDAGHFHPTEVISDKISAAML-YVPQLLLHVSRP-VRWDSDHVVLLDDE--TQ 306 + +D H + +A + L LH++ + D +V E T Sbjct: 190 AANLGVTIDFAHSLYADEQPAFAAALVQRRSKLLGLHLNDGYAKRDDGLMVASVHEQATL 249 Query: 307 AIASEIVRHDLFDRVHIGLDFFDAS-INRIAAWVIGTRNMKKAL-LRALLEPTAELRKLE 364 + E+ R FD F DAS ++ +A R +++ L + L + Sbjct: 250 ELLREVHRGG-FDGAIYFDTFPDASGLDPVAECAANIRTVRRMLGAVTQMAGDNRLADAQ 308 Query: 365 AAGDYTA 371 + D Sbjct: 309 SRHDPVQ 315 >UniRef50_Q1AZ02 Xylose isomerase n=3 Tax=Bacteria RepID=Q1AZ02_RUBXD Length = 354 Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 83/248 (33%), Gaps = 26/248 (10%) Query: 137 SHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP-DGMKDITV 195 + P A G + + D S+R+ ID K ++A G IW +G Sbjct: 85 TDPTYALGAFI-NPDPSLRRKGIDTLKRGIDLAAEVGANF------IIWPGAEGYNYPFQ 137 Query: 196 DRLAPRQR-LLAALDEVISEKLNPAHHIDAVESKLFGIGAESYT--VGSNEFYMGYAT-- 250 A R + A+ E+ +E + +E K + +G F + Sbjct: 138 RPYAETWRAFVEAVAEL-AEHASGRGIKVFLEHKNSEPAMQILMKNIGMTLFVIHKVEEL 196 Query: 251 ---SRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRW--DSDHVVLLDD-- 303 +R + +D H + +A + +L + D D+VV + Sbjct: 197 GVDTRNLLVNMDWQHLIMNGENLAEYAALLSAENRLGHQHANDGWGTFDDDNVVGTNFFM 256 Query: 304 ---ETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAEL 360 E EI + +R +G D + + +++AA +++ A A L Sbjct: 257 QTLELCHTLREIGYGEGGER--MGFDLYPYTEDQVAAVRRAILHLEFIWELAGRIDGAVL 314 Query: 361 RKLEAAGD 368 + D Sbjct: 315 AEARERAD 322 >UniRef50_A3TT39 Xylose isomerase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TT39_9RHOB Length = 319 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 89/272 (32%), Gaps = 19/272 (6%) Query: 110 IKPEHFKNWVEWA---KANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASR 166 + P+ + E K + L + + ++ D +RQ +D+ K + Sbjct: 47 VYPQDLGHDGEHVELLKESGLAVSAVNVNLKGEDLFRAGSFTNPDAGVRQTAVDYMKRAM 106 Query: 167 RVSAYFGEQLGTPSVMNIWIPDGMKDIT-VDRLAPRQRLLAALDEVISEKLNPAHHIDAV 225 +SA FG + + + DG VD +A + + A +EV + + + ++ Sbjct: 107 EMSAEFGADMISVCPLI----DGSDHAFHVDHMAQWRWAIEAFEEVAAHRPD---VKVSI 159 Query: 226 ESKLFGI--GAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQL 283 E K + + ++G + + + +D GH A +L Sbjct: 160 EYKAYEVRNRIVLPSMGRTLHFCDRVGADNLGVTMDLGHALIEHESPAAELAVAFDAGRL 219 Query: 284 LL-HVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFD-RVHIGLDFFDASINRIAAWVIG 341 H + R + + I D I D F + + A Sbjct: 220 FYVHFNDNNRQADWDMPVASVNLWETLETIHYMDSLGYDGWIAYDVFTRAGDGPEAVGHT 279 Query: 342 TRNMKKALLRALLEPT--AELRKLEAAGDYTA 371 M+ LRALL +R+ +GD Sbjct: 280 FETMED--LRALLAKMGPERIRRFVESGDSAR 309 >UniRef50_C9AXF9 AP endonuclease n=3 Tax=Firmicutes RepID=C9AXF9_ENTCA Length = 314 Score = 49.1 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 13/167 (7%) Query: 145 FTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP-DGMKDI-TVDRLAPRQ 202 L +A+ + Q + CK + G + V+ IW+ DG ++ Sbjct: 74 GELGNANSQVAQHALTLCKEAADYCRAAGGE-----VVTIWLGFDGFDYSFQINYQKVWN 128 Query: 203 RLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYT--VGSNEFYMGYATSRQTALCLDA 260 ++ A E+ + ++E K F A ++ +G + + + LD Sbjct: 129 QIRDAFIEIADYAPD---LKISIEYKPFQPRAYAFIDSMGVTGMMLNEINRKNVGVTLDY 185 Query: 261 GHFHPTEVISDKISAAMLYVPQL-LLHVSRPVRWDSDHVVLLDDETQ 306 H + L +H++ + D +++ Sbjct: 186 CHMLMKHENPAFAADLFAGKGLLYGVHLNDGYGLNDDGLMIGSATPF 232 >UniRef50_A0AFB3 Complete genome n=2 Tax=Bacteria RepID=A0AFB3_LISW6 Length = 311 Score = 49.1 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 13/167 (7%) Query: 145 FTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP-DGMKDI-TVDRLAPRQ 202 L ++D I + CK + G + V+ IW+ DG ++ + Sbjct: 74 GELGNSDPKISANALKLCKDAADYCREAGGK-----VVTIWLGFDGFDYSFQINYKKVWE 128 Query: 203 RLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYT--VGSNEFYMGYATSRQTALCLDA 260 +L A E+ + ++E K F A ++ +G + + LD Sbjct: 129 QLRNAFTEIADYAPD---LKISIEYKPFQPRAYAFIDSMGLTGMMLNDINRDNVGVTLDY 185 Query: 261 GHFHPTEVISDKISAAMLYVPQL-LLHVSRPVRWDSDHVVLLDDETQ 306 H + +L +H++ + D +++ Sbjct: 186 CHMLMKHENPAFGADIFGSQGKLYGVHLNDGYGLNDDGLMIGSATPF 232 >UniRef50_B9XG89 Xylose isomerase n=2 Tax=Verrucomicrobiales RepID=B9XG89_9BACT Length = 344 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 105/303 (34%), Gaps = 33/303 (10%) Query: 90 KRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLD--------FNPSCFSHPLS 141 KRL A+ D V I + + + + LD P + P + Sbjct: 39 KRLGFDAMMFHDDDAVP--DIDSKSEAEIRKATRELKKKLDGEGIAAEMVAPRLWFSPNT 96 Query: 142 ADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPR 201 DG S+ + RQ+ ID + ++ ++ ++ +W+ + + + Sbjct: 97 IDGAYTSN-NPKHRQYAIDRSLRTIDIA-----RILDTDLIVLWLAREGTYVRESKNPRK 150 Query: 202 --QRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYT-VGSNEFYMGYATSRQTAL-- 256 + L+ A+D++++ + A+E K +Y + + T + Sbjct: 151 GVEYLVEAMDKMLA---HDKRIRLAIEPKPNEPMDHAYVPTIGHALAIAQQTRDPKRVGA 207 Query: 257 CLDAGH-FHPTEVISDKISAAMLYVPQLLLHVS--RPVRWDSDHVVLLDDETQAIASE-- 311 +++ H SD+I+ AM + LH++ +++D D ++ ++ Sbjct: 208 LIESAHCTLAGLDPSDEIAFAMSFDKLWSLHLNDQNGLKFDQDK-PFGSTNLRSAFNQVR 266 Query: 312 -IVRHDLFDRVHIGLDFFDA-SINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDY 369 + ++ + WV N ++ L+ L+E + +A Sbjct: 267 VLEQNKYGSNGEYVCFDVHPFRTTKPEHWVAHLDNSRRTFLK-LVEKARTYNESKARQMI 325 Query: 370 TAR 372 R Sbjct: 326 ADR 328 >UniRef50_A5CPC1 Xylose isomerase n=67 Tax=Bacteria RepID=XYLA_CLAM3 Length = 397 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 93/266 (34%), Gaps = 23/266 (8%) Query: 131 FNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP-DG 189 + FS P+ DG S+ D ++R+F I + ++A G Q +W +G Sbjct: 89 VTTNLFSAPVFKDGGFTSN-DRAVRRFAIRKVLRNIDLAAELGAQ-----TFVMWGGREG 142 Query: 190 MK-DITVDRLAPRQRLLAALDEVISEKLNPAHH--IDAVESKLFGI-GAESYTVGSNEFY 245 + D D +R A++ ++ + + + A+E K G + Sbjct: 143 AEYDSAKDVRGALERYREAVN-LLGDYVTDKGYDIRFAIEPKPNEPRGDILLPTLGHALA 201 Query: 246 MGYATSRQTALCL--DAGHFHPTEVISDKISAAMLYVPQLLLHVS----RPVRWDSDHVV 299 R + + + GH + LY +L H+ R +++D D V Sbjct: 202 FIETLERPELVGVNPEVGHEQMAGLNFTAGIMQALYQGKL-FHIDLNGQRGIKYDQDLVF 260 Query: 300 L-LDDETQAIASEIVRHDLF--DRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEP 356 D + +++ + R + G FD +R + G + A +R L Sbjct: 261 GHGDLQNAFSLVDLLENGGVGGGRSYDGPRHFDYKPSRTED-ITGVWDSAAANMRMYLLL 319 Query: 357 TAELRKLEAAGDYTARLALLEEQKSL 382 + A + LA + Q+ Sbjct: 320 KERAQAFRADPEVQEALAAAKVQEIY 345 >UniRef50_A0LJR2 Xylose isomerase domain protein TIM barrel n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJR2_SYNFM Length = 287 Score = 43.7 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 15/192 (7%) Query: 129 LDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPD 188 + + CF PL +L++ D R++ I++ K ++ + SV + + Sbjct: 73 VGYYGGCFWEPLFE--PSLANPDPDARKWRIEYSKRCVEIAHEL--ECPNVSVTSGRMVP 128 Query: 189 GMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGY 248 G + L +L+ V+ +E + G G E M Sbjct: 129 GTLPSES-----LELLKDSLEAVL-RCGEAHGVRIGME---YEPGLLVERCGELEALMRA 179 Query: 249 ATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDET-QA 307 S LD GH H + + ++ +H+ R H++ E A Sbjct: 180 LDSPWFGANLDLGHSHVLGEEPEFVVRSL-GARIFHVHIEDIARRKHYHLIPGLGEVDFA 238 Query: 308 IASEIVRHDLFD 319 I+ + +D Sbjct: 239 ALFRILDDNRYD 250 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.121 0.310 Lambda K H 0.267 0.0369 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,239,874,239 Number of Sequences: 3077464 Number of extensions: 84758099 Number of successful extensions: 227540 Number of sequences better than 1.0e-01: 27 Number of HSP's better than 0.1 without gapping: 20 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 227432 Number of HSP's gapped (non-prelim): 42 length of query: 419 length of database: 1,040,396,356 effective HSP length: 131 effective length of query: 288 effective length of database: 637,248,572 effective search space: 183527588736 effective search space used: 183527588736 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 94 (41.0 bits)