18/01/2012 01:54:43 : INFO  : Run start: Wed Jan 18 01:54:43 GMT 2012
18/01/2012 01:54:43 : INFO  : Initialised job
18/01/2012 01:54:43 : INFO  : Renaming log file 'phyre2_20120118_015443.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/phyre_20120118_015443.log'
18/01/2012 01:54:43 : INFO  : Initialised job:
Sequence
>batch____
MHYMKWIYPRRLRNQMILMAILMVIVPTLTIGYIVETEGRSAVLSEKEKKLSAVVNLLNQ
ALGDRYDLYIDLPREERIRALNAELAPITENITHAFPGIGAGYYNKMLDAIITYAPSALY
QNNVGVTIAADHPGREVMRTNTPLVYSGRQVRGDILNSMLPIERNGEILGYIWANELTED
IRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSANIDIITDGLSTLAQNIPTRLPQLP
GEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRH
ELVGQPYSMLFDNTQFYSPVLDTLEHGTEHVALEISFPGRDRTIELSVTTSRIHNTHGEM
IGALVIFSDLTARKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSD
PIHQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARV
DFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDN
GCGIDLSLQKKIFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI
NPQGNQTV

18/01/2012 01:54:43 : INFO  : Checked sequence
18/01/2012 01:54:43 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 01:54:43 : INFO  : PSI-BLAST 3 iterations
18/01/2012 01:58:07 : INFO  : PSI-BLAST 5 iterations
18/01/2012 02:03:36 : INFO  : Finished PSI-BLAST
18/01/2012 02:03:36 : INFO  : Running Buildali to generate a3m file
18/01/2012 05:20:43 : INFO  : Converting to HMM
18/01/2012 05:22:42 : INFO  : Calibrating HMM
18/01/2012 05:22:57 : INFO  : Searching HMM database
18/01/2012 05:33:52 : INFO  : Finished buildali
18/01/2012 05:33:52 : INFO  : Predicting secondary structure
18/01/2012 05:33:52 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 05:33:52 : INFO  : Predicting Disordered regions
18/01/2012 05:33:52 : INFO  : Predicted Disorder (Disopred)
18/01/2012 05:33:52 : INFO  : Running memsat_svm check
18/01/2012 05:37:38 : INFO  : Running memsat_svm full
18/01/2012 05:39:30 : INFO  : Predicted Transmembrane (memsat_svm) ID 'e476e983d4dea314'
18/01/2012 05:39:30 : INFO  : Initialising fold library search
18/01/2012 05:39:30 : INFO  : Initialised search input
18/01/2012 05:39:30 : INFO  : Building Ensemble models
18/01/2012 05:39:30 : INFO  : Building hh.c3a0rA_.model.1.pdb
18/01/2012 05:39:31 : INFO  : Building hh.c3d36B_.model.2.pdb
18/01/2012 05:39:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.c3d36B_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/c3d36B_.2.pdb
18/01/2012 05:39:31 : INFO  : Building hh.c2c2aA_.model.3.pdb
18/01/2012 05:39:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.c2c2aA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/c2c2aA_.6.pdb
18/01/2012 05:39:32 : INFO  : Building hh.c3by9A_.model.4.pdb
18/01/2012 05:39:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.c3by9A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/c3by9A_.121.pdb
18/01/2012 05:39:32 : INFO  : Building hh.d2p7ja2.model.5.pdb
18/01/2012 05:39:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.d2p7ja2.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/d2p7ja2.122.pdb
18/01/2012 05:39:33 : INFO  : Building hh.d1p0za_.model.6.pdb
18/01/2012 05:39:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.d1p0za_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/d1p0za_.124.pdb
18/01/2012 05:39:33 : INFO  : Building hh.c3e4pB_.model.7.pdb
18/01/2012 05:39:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.c3e4pB_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/c3e4pB_.126.pdb
18/01/2012 05:39:34 : INFO  : Building hh.d3by8a1.model.8.pdb
18/01/2012 05:39:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.d3by8a1.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/d3by8a1.128.pdb
18/01/2012 05:39:34 : INFO  : Building hh.c3fosA_.model.9.pdb
18/01/2012 05:39:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.c3fosA_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/c3fosA_.129.pdb
18/01/2012 05:39:35 : INFO  : Building hh.c3lnrA_.model.10.pdb
18/01/2012 05:39:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.c3lnrA_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/c3lnrA_.133.pdb
18/01/2012 05:39:35 : INFO  : Building hh.d2asxa1.model.11.pdb
18/01/2012 05:39:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/hh.d2asxa1.model.11.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e476e983d4dea314/d2asxa1.135.pdb
18/01/2012 05:39:35 : INFO  : Building c3a0rA_.1.pdb
18/01/2012 05:39:36 : INFO  : Building c3d36B_.2.pdb
18/01/2012 05:39:36 : INFO  : Building c2q8fA_.3.pdb
18/01/2012 05:39:37 : INFO  : Building c2bu8A_.4.pdb
18/01/2012 05:39:38 : INFO  : Building c3d2rB_.5.pdb
18/01/2012 05:39:38 : INFO  : Building c2c2aA_.6.pdb
18/01/2012 05:39:39 : INFO  : Building c1gjvA_.7.pdb
18/01/2012 05:39:39 : INFO  : Building c1y8oA_.8.pdb
18/01/2012 05:39:39 : INFO  : Building c3a0tA_.9.pdb
18/01/2012 05:39:40 : INFO  : Building d2c2aa2.10.pdb
18/01/2012 05:39:40 : INFO  : Building d1gkza2.11.pdb
18/01/2012 05:39:41 : INFO  : Building d1jm6a2.12.pdb
18/01/2012 05:39:42 : INFO  : Building d1id0a_.13.pdb
18/01/2012 05:39:44 : INFO  : Building c1b3qA_.14.pdb
18/01/2012 05:39:44 : INFO  : Building d1bxda_.15.pdb
18/01/2012 05:39:45 : INFO  : Building c2ch4A_.16.pdb
18/01/2012 05:39:45 : INFO  : Building d1i58a_.17.pdb
18/01/2012 05:39:45 : INFO  : Building d1ysra1.18.pdb
18/01/2012 05:39:48 : INFO  : Building c3jz3B_.19.pdb
18/01/2012 05:39:48 : INFO  : Building d1r62a_.20.pdb
18/01/2012 05:39:57 : INFO  : Finished HH model building
18/01/2012 05:39:57 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 05:40:05 : INFO  : html domain output complete ID 'e476e983d4dea314'
18/01/2012 06:36:30 : INFO  : Run end  : Wed Jan 18 06:36:30 GMT 2012
