Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	G	K	K	R	S	A	S	S	S	R	W	L	Q	E	H	F	S	D	K	Y	V	Q	Q	A	Q	K	K	G	L	R	S	R	A	W	F	K	L	D	E	I	Q	Q	S	D	K	L	F	K	P	G	M	T	V	V	D	L	G	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?									?										?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	P	G	G	W	S	Q	Y	V	V	T	Q	I	G	G	K	G	R	I	I	A	C	D	L	L	P	M	D	P	I	V	G	V	D	F	L	Q	G	D	F	R	D	E	L	V	M	K	A	L	L	E	R	V	G	D	S	K	V	Q	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	M	S	D	M	A	P	N	M	S	G	T	P	A	V	D	I	P	R	A	M	Y	L	V	E	L	A	L	E	M	C	R	D	V	L	A	P	G	G	S	F	V	V	K	V	F	Q	G	E	G	F	D	E	Y	L	R	E	I	R	S
Secondary structure
SS confidence
Disorder								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence		L	F	T	K	V	K	V	R	K	P	D	S	S	R	A	R	S	R	E	V	Y	I	V	A	T	G	R	K	P
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ej0 chain A Region: 30 - 209 Aligned: 180 Modelled: 180 Confidence: 100.0% Identity: 100% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: RNA methyltransferase FtsJ Phyre2 PDB 2nyu chain A Region: 31 - 208 Aligned: 170 Modelled: 178 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: A: PDB Molecule:putative ribosomal rna methyltransferase 2; PDBTitle: crystal structure of human ftsj homolog 2 (e.coli) protein2 in complex with s-adenosylmethionine Phyre2 PDB 2plw chain A Region: 31 - 208 Aligned: 173 Modelled: 178 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: A: PDB Molecule:ribosomal rna methyltransferase, putative; PDBTitle: crystal structure of a ribosomal rna methyltransferase, putative, from2 plasmodium falciparum (pf13_0052). Phyre2 PDB 3dou chain A Region: 31 - 208 Aligned: 169 Modelled: 178 Confidence: 100.0% Identity: 33% PDB header:transferase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase j; PDBTitle: crystal structure of methyltransferase involved in cell2 division from thermoplasma volcanicum gss1 Phyre2 PDB 2wa1 chain A Region: 10 - 208 Aligned: 190 Modelled: 199 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:non-structural protein 5; PDBTitle: structure of the methyltransferase domain from modoc virus,2 a flavivirus with no known vector (nkv) Phyre2 PDB 2px2 chain B Region: 3 - 209 Aligned: 196 Modelled: 202 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:genome polyprotein [contains: capsid protein c PDBTitle: crystal structure of the murray valley encephalitis virus2 ns5 2'-o methyltransferase domain in complex with sah3 (monoclinic form 1) Phyre2 PDB 2p3q chain A Region: 3 - 209 Aligned: 197 Modelled: 203 Confidence: 100.0% Identity: 19% PDB header:viral protein,transferase Chain: A: PDB Molecule:type ii methyltransferase; PDBTitle: crystal structure of dengue methyltransferase in complex with gpppg2 and s-adenosyl-l-homocysteine Phyre2 PDB 3lkz chain B Region: 3 - 209 Aligned: 197 Modelled: 206 Confidence: 100.0% Identity: 21% PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Phyre2 PDB 3gcz chain A Region: 15 - 209 Aligned: 184 Modelled: 195 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:polyprotein; PDBTitle: yokose virus methyltransferase in complex with adomet Phyre2 PDB 2p41 chain A domain 1 Region: 16 - 209 Aligned: 183 Modelled: 183 Confidence: 100.0% Identity: 17% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: mRNA cap methylase Phyre2 PDB 3eva chain A Region: 3 - 209 Aligned: 196 Modelled: 205 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase ns5; PDBTitle: crystal structure of yellow fever virus methyltransferase complexed2 with s-adenosyl-l-homocysteine Phyre2 PDB 3opn chain A Region: 31 - 208 Aligned: 162 Modelled: 162 Confidence: 99.9% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hemolysin; PDBTitle: the crystal structure of a putative hemolysin from lactococcus lactis Phyre2 PDB 2frx chain D Region: 50 - 209 Aligned: 153 Modelled: 160 Confidence: 99.9% Identity: 20% PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli Phyre2 PDB 3m6w chain A Region: 49 - 209 Aligned: 160 Modelled: 161 Confidence: 99.8% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine Phyre2 PDB 3hp7 chain A Region: 19 - 209 Aligned: 170 Modelled: 177 Confidence: 99.8% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. Phyre2 PDB 3m4x chain A Region: 49 - 209 Aligned: 158 Modelled: 161 Confidence: 99.8% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase Phyre2 PDB 2yxl chain A Region: 50 - 208 Aligned: 153 Modelled: 153 Confidence: 99.8% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:450aa long hypothetical fmu protein; PDBTitle: crystal structure of ph0851 Phyre2 PDB 1ixk chain A Region: 49 - 191 Aligned: 135 Modelled: 143 Confidence: 99.8% Identity: 23% Fold: S-adenosyl-L-methionine-dependent methyltransferases Superfamily: S-adenosyl-L-methionine-dependent methyltransferases Family: NOL1/NOP2/sun Phyre2 PDB 3ely chain A Region: 3 - 203 Aligned: 193 Modelled: 201 Confidence: 99.7% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: wesselsbron virus methyltransferase in complex with adohcy Phyre2 PDB 1sqg chain A Region: 49 - 208 Aligned: 150 Modelled: 154 Confidence: 99.7% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:sun protein; PDBTitle: the crystal structure of the e. coli fmu apoenzyme at 1.652 a resolution Phyre2 1 d1ej0a_ 2 c2nyuA_ 3 c2plwA_ 4 c3douA_ 5 c2wa1A_ 6 c2px2B_ 7 c2p3qA_ 8 c3lkzB_ 9 c3gczA_ 10 d2p41a1 11 c3evaA_ 12 c3opnA_ 13 c2frxD_ 14 c3m6wA_ 15 c3hp7A_ 16 c3m4xA_ 17 c2yxlA_ 18 d1ixka_ 19 c3elyA_ 20 c1sqgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ej0a_ 100.0 100 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:RNA methyltransferase FtsJ 2 c2nyuA_ 100.0 37 PDB header:transferase Chain: A: PDB Molecule:putative ribosomal rna methyltransferase 2; PDBTitle: crystal structure of human ftsj homolog 2 (e.coli) protein2 in complex with s-adenosylmethionine 3 c2plwA_ 100.0 29 PDB header:transferase Chain: A: PDB Molecule:ribosomal rna methyltransferase, putative; PDBTitle: crystal structure of a ribosomal rna methyltransferase, putative, from2 plasmodium falciparum (pf13_0052). 4 c3douA_ 100.0 33 PDB header:transferase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase j; PDBTitle: crystal structure of methyltransferase involved in cell2 division from thermoplasma volcanicum gss1 5 c2wa1A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:non-structural protein 5; PDBTitle: structure of the methyltransferase domain from modoc virus,2 a flavivirus with no known vector (nkv) 6 c2px2B_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:genome polyprotein [contains: capsid protein c PDBTitle: crystal structure of the murray valley encephalitis virus2 ns5 2'-o methyltransferase domain in complex with sah3 (monoclinic form 1) 7 c2p3qA_ 100.0 19 PDB header:viral protein,transferase Chain: A: PDB Molecule:type ii methyltransferase; PDBTitle: crystal structure of dengue methyltransferase in complex with gpppg2 and s-adenosyl-l-homocysteine 8 c3lkzB_ 100.0 21 PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase 9 c3gczA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:polyprotein; PDBTitle: yokose virus methyltransferase in complex with adomet 10 d2p41a1 100.0 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:mRNA cap methylase 11 c3evaA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase ns5; PDBTitle: crystal structure of yellow fever virus methyltransferase complexed2 with s-adenosyl-l-homocysteine 12 c3opnA_ 99.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative hemolysin; PDBTitle: the crystal structure of a putative hemolysin from lactococcus lactis 13 c2frxD_ 99.9 20 PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli 14 c3m6wA_ 99.8 21 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine 15 c3hp7A_ 99.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 16 c3m4xA_ 99.8 20 PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase 17 c2yxlA_ 99.8 31 PDB header:transferase Chain: A: PDB Molecule:450aa long hypothetical fmu protein; PDBTitle: crystal structure of ph0851 18 d1ixka_ 99.8 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 19 c3elyA_ 99.7 17 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: wesselsbron virus methyltransferase in complex with adohcy 20 c1sqgA_ 99.7 22 PDB header:transferase Chain: A: PDB Molecule:sun protein; PDBTitle: the crystal structure of the e. coli fmu apoenzyme at 1.652 a resolution 21 c2oxtC_ not modelled 99.7 21 PDB header:viral protein Chain: C: PDB Molecule:nucleoside-2'-o-methyltransferase; PDBTitle: crystal structure of meaban virus nucleoside-2'-o-2 methyltransferase 22 c3a4tA_ not modelled 99.7 16 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase mj0026; PDBTitle: crystal structure of atrm4 from m.jannaschii with sinefungin 23 d1wg8a2 not modelled 99.6 27 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:MraW-like putative methyltransferases 24 d1sqga2 not modelled 99.6 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 25 c3eeyJ_ not modelled 99.6 21 PDB header:transferase Chain: J: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum 26 d1m6ya2 not modelled 99.6 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:MraW-like putative methyltransferases 27 d2b9ea1 not modelled 99.5 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:NOL1/NOP2/sun 28 d1g8aa_ not modelled 99.5 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 29 c2ipxA_ not modelled 99.5 20 PDB header:transferase Chain: A: PDB Molecule:rrna 2'-o-methyltransferase fibrillarin; PDBTitle: human fibrillarin 30 c3id5F_ not modelled 99.5 20 PDB header:transferase/ribosomal protein/rna Chain: F: PDB Molecule:fibrillarin-like rrna/trna 2'-o-methyltransferase; PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna 31 d1prya_ not modelled 99.4 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 32 c3bkxB_ not modelled 99.4 15 PDB header:transferase Chain: B: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of cyclopropane-fatty-acyl-phospholipid synthase-2 like protein (yp_807781.1) from lactobacillus casei atcc 334 at 1.853 a resolution 33 d2as0a2 not modelled 99.4 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:hypothetical RNA methyltransferase 34 d1yb2a1 not modelled 99.4 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 35 c1yb2A_ not modelled 99.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0852; PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum. 36 c3mtiA_ not modelled 99.4 13 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a 37 d1o54a_ not modelled 99.4 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 38 d1i9ga_ not modelled 99.4 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 39 c3mb5A_ not modelled 99.4 23 PDB header:transferase Chain: A: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of p. abyssi trna m1a58 methyltransferase in complex2 with s-adenosyl-l-methionine 40 d1g8sa_ not modelled 99.4 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 41 d2b78a2 not modelled 99.3 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:hypothetical RNA methyltransferase 42 c2as0A_ not modelled 99.3 20 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph1915; PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase 43 c2ozvA_ not modelled 99.3 15 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein atu0636; PDBTitle: crystal structure of a predicted o-methyltransferase, protein atu6362 from agrobacterium tumefaciens. 44 d1nt2a_ not modelled 99.3 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Fibrillarin homologue 45 c3g5tA_ not modelled 99.3 17 PDB header:transferase Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase; PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast 46 c2yvlB_ not modelled 99.3 19 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus 47 c2b78A_ not modelled 99.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein smu.776; PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans 48 c2fk8A_ not modelled 99.3 22 PDB header:transferase Chain: A: PDB Molecule:methoxy mycolic acid synthase 4; PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine 49 d1wxxa2 not modelled 99.3 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:hypothetical RNA methyltransferase 50 d1yzha1 not modelled 99.3 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TrmB-like 51 d2fk8a1 not modelled 99.3 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 52 d1l1ea_ not modelled 99.3 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 53 c3e05B_ not modelled 99.3 16 PDB header:transferase Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating); PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15 54 d1kpia_ not modelled 99.3 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 55 c2pwyB_ not modelled 99.3 23 PDB header:transferase Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a m1a58 trna methyltransferase 56 d2b3ta1 not modelled 99.3 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N5-glutamine methyltransferase, HemK 57 d1kpga_ not modelled 99.3 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 58 c1wxwA_ not modelled 99.2 19 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ttha1280; PDBTitle: crystal structure of tt1595, a putative sam-dependent2 methyltransferase from thermus thermophillus hb8 59 c3ujcA_ not modelled 99.2 14 PDB header:transferase Chain: A: PDB Molecule:phosphoethanolamine n-methyltransferase; PDBTitle: phosphoethanolamine methyltransferase mutant (h132a) from plasmodium2 falciparum in complex with phosphocholine 60 d1tpya_ not modelled 99.2 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 61 c3bgvC_ not modelled 99.2 18 PDB header:transferase Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase; PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah 62 c3c0kB_ not modelled 99.2 16 PDB header:transferase Chain: B: PDB Molecule:upf0064 protein yccw; PDBTitle: crystal structure of a ribosomal rna methyltranferase 63 c3lpmA_ not modelled 99.2 16 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of putative methyltransferase small domain protein2 from listeria monocytogenes 64 d1l3ia_ not modelled 99.2 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Precorrin-6Y methyltransferase (CbiT) 65 c3ofkA_ not modelled 99.2 14 PDB header:transferase Chain: A: PDB Molecule:nodulation protein s; PDBTitle: crystal structure of n-methyltransferase nods from bradyrhizobium2 japonicum wm9 in complex with s-adenosyl-l-homocysteine (sah) 66 c3ku1E_ not modelled 99.2 15 PDB header:transferase Chain: E: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of streptococcus pneumoniae sp1610, a2 putative trna (m1a22) methyltransferase, in complex with s-3 adenosyl-l-methionine 67 d1i1na_ not modelled 99.2 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Protein-L-isoaspartyl O-methyltransferase 68 d2b25a1 not modelled 99.2 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 69 c3grzA_ not modelled 99.2 15 PDB header:transferase Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase; PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus 70 c1wg8B_ not modelled 99.2 30 PDB header:transferase Chain: B: PDB Molecule:predicted s-adenosylmethionine-dependent PDBTitle: crystal structure of a predicted s-adenosylmethionine-2 dependent methyltransferase tt1512 from thermus3 thermophilus hb8. 71 d1dusa_ not modelled 99.2 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical protein MJ0882 72 c3lecA_ not modelled 99.1 15 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:nadb-rossmann superfamily protein; PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a 73 d1dl5a1 not modelled 99.1 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Protein-L-isoaspartyl O-methyltransferase 74 d2nxca1 not modelled 99.1 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Ribosomal protein L11 methyltransferase PrmA 75 d1jqea_ not modelled 99.1 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Histamine methyltransferase 76 c3e23A_ not modelled 99.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rpa2492; PDBTitle: crystal structure of the rpa2492 protein in complex with2 sam from rhodopseudomonas palustris, northeast structural3 genomics consortium target rpr299 77 d1xcla_ not modelled 99.1 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Guanidinoacetate methyltransferase 78 c3a26A_ not modelled 99.1 19 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein ph0793; PDBTitle: crystal structure of p. horikoshii tyw2 in complex with2 mesado 79 c3ggdA_ not modelled 99.1 12 PDB header:transferase Chain: A: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of sam-dependent methyltransferase (yp_325210.1)2 from anabaena variabilis atcc 29413 at 2.11 a resolution 80 d1ve3a1 not modelled 99.1 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:CAC2371-like 81 c1m6yA_ not modelled 99.1 24 PDB header:transferase Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw; PDBTitle: crystal structure analysis of tm0872, a putative sam-2 dependent methyltransferase, complexed with sah 82 c3hm2G_ not modelled 99.1 13 PDB header:transferase Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase; PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae 83 d2o57a1 not modelled 99.1 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 84 d2igta1 not modelled 99.1 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:hypothetical RNA methyltransferase 85 c3e7pA_ not modelled 99.1 24 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482 86 d1nkva_ not modelled 99.1 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical Protein YjhP 87 c3evzA_ not modelled 99.1 12 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus 88 d1nv8a_ not modelled 99.1 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N5-glutamine methyltransferase, HemK 89 c3gnlB_ not modelled 99.1 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein, duf633, lmof2365_1472; PDBTitle: structure of uncharacterized protein (lmof2365_1472) from2 listeria monocytogenes serotype 4b 90 d2gh1a1 not modelled 99.1 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:BC2162-like 91 c3dliB_ not modelled 99.1 15 PDB header:transferase Chain: B: PDB Molecule:methyltransferase; PDBTitle: crystal structure of a sam dependent methyltransferase from2 archaeoglobus fulgidus 92 c3ccfB_ not modelled 99.1 17 PDB header:transferase Chain: B: PDB Molecule:cyclopropane-fatty-acyl-phospholipid synthase; PDBTitle: crystal structure of putative methyltransferase (yp_321342.1) from2 anabaena variabilis atcc 29413 at 1.90 a resolution 93 d2frna1 not modelled 99.1 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Met-10+ protein-like 94 d2fcaa1 not modelled 99.1 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:TrmB-like 95 c1z3cA_ not modelled 99.0 23 PDB header:transferase Chain: A: PDB Molecule:mrna capping enzyme; PDBTitle: encephalitozooan cuniculi mrna cap (guanine-n7)2 methyltransferasein complexed with azoadomet 96 d1ri5a_ not modelled 99.0 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:mRNA cap (Guanine N-7) methyltransferase 97 c3ocjA_ not modelled 99.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis 98 c3dmgA_ not modelled 99.0 17 PDB header:transferase Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase; PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy 99 c3f4kA_ not modelled 99.0 20 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of a probable methyltransferase from2 bacteroides thetaiotaomicron. northeast structural3 genomics target btr309. 100 c1dl5A_ not modelled 99.0 23 PDB header:transferase Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase; PDBTitle: protein-l-isoaspartate o-methyltransferase 101 d1zx0a1 not modelled 99.0 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Guanidinoacetate methyltransferase 102 c3njrB_ not modelled 99.0 16 PDB header:transferase Chain: B: PDB Molecule:precorrin-6y methylase; PDBTitle: crystal structure of c-terminal domain of precorrin-6y c5,15-2 methyltransferase from rhodobacter capsulatus 103 d2ex4a1 not modelled 99.0 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:AD-003 protein-like 104 c2yxeB_ not modelled 99.0 22 PDB header:transferase Chain: B: PDB Molecule:protein-l-isoaspartate o-methyltransferase; PDBTitle: crystal structure of l-isoaspartyl protein carboxyl methyltranferase 105 c3dxyA_ not modelled 99.0 9 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase; PDBTitle: crystal structure of ectrmb in complex with sam 106 c3h2bB_ not modelled 99.0 20 PDB header:transferase Chain: B: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of the sam-dependent methyltransferase2 cg3271 from corynebacterium glutamicum in complex with s-3 adenosyl-l-homocysteine and pyrophosphate. northeast4 structural genomics consortium target cgr113a 107 d1r18a_ not modelled 99.0 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Protein-L-isoaspartyl O-methyltransferase 108 c2pbfA_ not modelled 99.0 14 PDB header:transferase Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase beta-aspartate PDBTitle: crystal structure of a putative protein-l-isoaspartate o-2 methyltransferase beta-aspartate methyltransferase (pcmt) from3 plasmodium falciparum in complex with s-adenosyl-l-homocysteine 109 c3a27A_ not modelled 99.0 16 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein mj1557; PDBTitle: crystal structure of m. jannaschii tyw2 in complex with2 adomet 110 d1p1ca_ not modelled 99.0 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Guanidinoacetate methyltransferase 111 d1xxla_ not modelled 99.0 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:UbiE/COQ5-like 112 c2yx1A_ not modelled 99.0 22 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein mj0883; PDBTitle: crystal structure of m.jannaschii trna m1g37 methyltransferase 113 c2yxdA_ not modelled 99.0 16 PDB header:transferase Chain: A: PDB Molecule:probable cobalt-precorrin-6y c(15)-methyltransferase PDBTitle: crystal structure of cobalamin biosynthesis precorrin 8w decarboxylase2 (cbit) 114 c3duwB_ not modelled 99.0 14 PDB header:transferase Chain: B: PDB Molecule:o-methyltransferase, putative; PDBTitle: crystal structural analysis of the o-methyltransferase from2 bacillus cereus in complex sah 115 c2yr0A_ not modelled 99.0 22 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ttha0223; PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8 116 c3cc8A_ not modelled 99.0 13 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of a putative methyltransferase (bce_1332) from2 bacillus cereus atcc 10987 at 1.64 a resolution 117 d1r74a_ not modelled 99.0 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Glycine N-methyltransferase 118 c1vl5B_ not modelled 99.0 19 PDB header:transferase Chain: B: PDB Molecule:unknown conserved protein bh2331; PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution 119 d1y8ca_ not modelled 99.0 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:CAC2371-like 120 c2pjdA_ not modelled 99.0 14 PDB header:transferase Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c; PDBTitle: crystal structure of 16s rrna methyltransferase rsmc

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0