216 d2hoxa1 Probab=99.84   E-value=6.3e-18  Score=129.73  Aligned_columns=288  Identities=13%

Q ss_pred             CCCHHHHHHHHHHHHHH--------CCCEEEEECCHHHHHHHHHHHCCCCCCCE--------EEEECCCCHHHHHHHHHH
Q ss_conf             18945899999999970--------89879998998999999999703798888--------998078647899999981
Q batch____        30 TTGPKNQALEQAFCQLT--------GNQHAIAVSSATAGMHITLMALKIGKGDE--------VITPSLTWVSTLNMISLL   93 (379)
Q Consensus        30 ~~~p~~~~le~~lA~~~--------g~~~~i~~~sgt~a~~~~l~~l~~~~Gd~--------Vl~~~~~~~~~~~~~~~~   93 (379)
                      ...+...+|++.|+++.        ..+++++++++++++.+++.++ ++|||.        |++..+.|+.+...+...
T Consensus        97 ~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL-~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~  175 (425)
T d2hoxa1          97 VSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISL-SPNMTATPDAPESKVVAHAPFYPVFREQTKYF  175 (425)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHH-SCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH-CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHC
T ss_conf             43445289999999998850886788776999468899999999986-48886123567743573002377899999855


Q ss_pred             CCCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCE
Q ss_conf             66365320102663101888863002332223200146887888999987875136508972022675679862311480
Q batch____        94 GATPVMVDVDRDTLMVTPEAIESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVGTYYKGRHIGAKGT  173 (379)
Q Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~i~~~a~~~~~~~i~D~a~~~g~~~~~~~~~~~~~  173 (379)
                      +.....+..+.+.    ..+.....++...+++++||+|.+.+       |.+++.++++|+++.......-....+..+
T Consensus       176 ~~~~~~~~~d~~~----~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~~~~~~~~~~~~~~~i  244 (425)
T d2hoxa1         176 DKKGYVWAGNAAN----YVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDI  244 (425)
T ss_dssp             CCTTEEEEEEGGG----GTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBCCSE
T ss_pred             CCCCCCCCCCHHH----HHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCCCCCCCCCCCCCCCCEE
T ss_conf             9974442479889----99724888579998178888560654-------232396899714323433233334568549


Q ss_pred             EEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHC--
Q ss_conf             366404566768987549980679999876887406754555443211001234443102445568899999999620--
Q batch____       174 AIFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDRQTWGRAPQAEVLTPGYKYNLTDINAAIALTQLV--  251 (379)
Q Consensus       174 ~~~~~s~~K~l~~~~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--  251 (379)
                      .+.++|+...+++...|.++..++.+.+.+..                        .........+..........+.  
T Consensus       245 ~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~------------------------~~~~~~~~~s~~~Q~aA~~~L~~~  300 (425)
T d2hoxa1         245 LLFTMSKFTGHSGSRFGWALIKDESVYNNLLN------------------------YMTKNTEGTPRETQLRSLKVLKEV  300 (425)
T ss_dssp             EEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH------------------------HHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCCEEEEEECCHHHHHHHHH------------------------HHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf             99815510123323101899689899999998------------------------641057773689999999996020


Q ss_pred             -------------CHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---------CCCEEEEEEECCCCCCCCHHHH
Q ss_conf             -------------005889999998999997631089837623678777---------7402899995375469998999
Q batch____       252 -------------KLEHLNTRRREIAQQYQQALAALPFQPLSLPAWPHV---------HAWHLFIIRVDEQRCGISRDAL  309 (379)
Q Consensus       252 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~~~l  309 (379)
                                   ......+..+++.+.+.+.+...+...+........         +.....++.+...    +.+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~----~~~~~  376 (425)
T d2hoxa1         301 VAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----EDKDC  376 (425)
T ss_dssp             HHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----GGCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC----CHHHH
T ss_conf             13456555548999999999999999999999863576300345655432210013778761699867898----08999


Q ss_pred             HHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             9999977968888043111123355521546884367984892899638769999999999999998559
Q batch____       310 MEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTTADADHVITALQQLAGQ  379 (379)
Q Consensus       310 ~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~irl~~~~~~t~edi~~i~~~l~~i~~~  379 (379)
                      .+.|.++||.++++..                    -....+.|||++..  ++|++|.+++.|++++++
T Consensus       377 ~~lL~e~GI~v~pGs~--------------------FG~~~~~vRiSl~~--~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         377 YQTFQNGRINTQNGVG--------------------FEASSRYVRLSLIK--TQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             HHHHHHTTEECEEGGG--------------------GTSCTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCEEEECCCC--------------------CCCCCCEEEEEECC--CHHHHHHHHHHHHHHHHC
T ss_conf             9999966949971702--------------------38988659999139--989999999999998726