Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	R	K	W	A	N	I	V	A	K	K	T	A	K	D	G	A	T	S	K	I	Y	A	K	F	G	V	E	I	Y	A	A	A	K	Q	G	E	P	D	P	E	L	N	T	S	L	K	F	V	I	E	R	A	K	Q	A	Q	V	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?								?	?	?																					?			?	?	?	?															?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	H	V	I	D	K	A	I	D	K	A	K	G	G	G	D	E	T	F	V	Q	G	R	Y	E	G	F	G	P	N	G	S	M	I	I	A	E	T	L	T	S	N	V	N	R	T	I	A	N	V	R	T	I	F	N	K	K	G	G	N
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	G	A	A	G	S	V	S	Y	M	F	D	N	T	G	V	I	V	F	K	G	T	D	P	D	H	I	F	E	I	L	L	E	A	E	V	D	V	R	D	V	T	E	E	E	G	N	I	V	I	Y	T	E	P	T	D	L	H	K	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence		I	A	A	L	K	A	A	G	I	T	E	F	S	T	T	E	L	E	M	I	A	Q	S	E	V	E	L	S	P	E	D	L	E	I	F	E	G	L	V	D	A	L	E	D	D	D	D	V	Q	K	V	Y	H	N	V	A	N	L
Secondary structure
SS confidence
Disorder																																																									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1lfp chain A Region: 4 - 235 Aligned: 229 Modelled: 232 Confidence: 100.0% Identity: 36% Fold: YebC-like Superfamily: YebC-like Family: YebC-like Phyre2 PDB 1kon chain A Region: 4 - 235 Aligned: 220 Modelled: 224 Confidence: 100.0% Identity: 39% Fold: YebC-like Superfamily: YebC-like Family: YebC-like Phyre2 PDB 1mw7 chain A Region: 21 - 235 Aligned: 211 Modelled: 215 Confidence: 100.0% Identity: 32% Fold: YebC-like Superfamily: YebC-like Family: YebC-like Phyre2 PDB 2jsx chain A Region: 167 - 231 Aligned: 60 Modelled: 65 Confidence: 58.9% Identity: 18% PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd Phyre2 PDB 2zf8 chain A Region: 175 - 231 Aligned: 56 Modelled: 57 Confidence: 43.0% Identity: 13% PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty Phyre2 PDB 2vsa chain A Region: 82 - 92 Aligned: 11 Modelled: 11 Confidence: 35.3% Identity: 55% PDB header:toxin Chain: A: PDB Molecule:mosquitocidal toxin; PDBTitle: structure and mode of action of a mosquitocidal holotoxin Phyre2 PDB 2dha chain A Region: 106 - 187 Aligned: 78 Modelled: 82 Confidence: 35.2% Identity: 12% PDB header:rna binding protein Chain: A: PDB Molecule:flj20171 protein; PDBTitle: solution structure of the second rna recognition motif in2 hypothetical protein flj201171 Phyre2 PDB 2cyy chain A domain 2 Region: 168 - 236 Aligned: 67 Modelled: 66 Confidence: 33.9% Identity: 10% Fold: Ferredoxin-like Superfamily: Dimeric alpha+beta barrel Family: Lrp/AsnC-like transcriptional regulator C-terminal domain Phyre2 PDB 3ibw chain A Region: 167 - 232 Aligned: 65 Modelled: 66 Confidence: 32.7% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 2zbc chain H Region: 168 - 235 Aligned: 66 Modelled: 68 Confidence: 32.6% Identity: 12% PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. Phyre2 PDB 1kkh chain A domain 2 Region: 139 - 197 Aligned: 58 Modelled: 59 Confidence: 31.9% Identity: 14% Fold: Ferredoxin-like Superfamily: GHMP Kinase, C-terminal domain Family: Mevalonate kinase Phyre2 PDB 1fpq chain A Region: 84 - 141 Aligned: 56 Modelled: 58 Confidence: 31.6% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:isoliquiritigenin 2'-o-methyltransferase; PDBTitle: crystal structure analysis of selenomethionine substituted chalcone o-2 methyltransferase Phyre2 PDB 1ewq chain A domain 2 Region: 50 - 67 Aligned: 18 Modelled: 18 Confidence: 31.4% Identity: 39% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: ABC transporter ATPase domain-like Phyre2 PDB 1wey chain A Region: 89 - 153 Aligned: 60 Modelled: 65 Confidence: 31.3% Identity: 17% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Canonical RBD Phyre2 PDB 2nyi chain B Region: 94 - 231 Aligned: 133 Modelled: 138 Confidence: 31.2% Identity: 14% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria Phyre2 PDB 1p65 chain A Region: 106 - 132 Aligned: 27 Modelled: 27 Confidence: 31.0% Identity: 26% Fold: Nucleocapsid protein dimerization domain Superfamily: Nucleocapsid protein dimerization domain Family: Arterivirus nucleocapsid protein Phyre2 PDB 1p65 chain A Region: 106 - 132 Aligned: 27 Modelled: 27 Confidence: 31.0% Identity: 26% PDB header:viral protein Chain: A: PDB Molecule:nucleocapsid protein; PDBTitle: crystal structure of the nucleocapsid protein of porcine reproductive2 and respiratory syndrome virus (prrsv) Phyre2 PDB 3k2q chain A Region: 36 - 60 Aligned: 25 Modelled: 25 Confidence: 29.2% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase; PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88 Phyre2 PDB 2f1f chain A domain 2 Region: 137 - 207 Aligned: 71 Modelled: 71 Confidence: 26.5% Identity: 14% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2pc6 chain A domain 1 Region: 137 - 207 Aligned: 71 Modelled: 71 Confidence: 25.4% Identity: 20% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 1 d1lfpa_ 2 d1kona_ 3 d1mw7a_ 4 c2jsxA_ 5 c2zf8A_ 6 c2vsaA_ 7 c2dhaA_ 8 d2cyya2 9 c3ibwA_ 10 c2zbcH_ 11 d1kkha2 12 c1fpqA_ 13 d1ewqa2 14 d1weya_ 15 c2nyiB_ 16 d1p65a_ 17 c1p65A_ 18 c3k2qA_ 19 d2f1fa2 20 d2pc6a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1lfpa_ 100.0 36 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 2 d1kona_ 100.0 39 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 3 d1mw7a_ 100.0 32 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 4 c2jsxA_ 58.9 18 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 5 c2zf8A_ 43.0 13 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 6 c2vsaA_ 35.3 55 PDB header:toxin Chain: A: PDB Molecule:mosquitocidal toxin; PDBTitle: structure and mode of action of a mosquitocidal holotoxin 7 c2dhaA_ 35.2 12 PDB header:rna binding protein Chain: A: PDB Molecule:flj20171 protein; PDBTitle: solution structure of the second rna recognition motif in2 hypothetical protein flj201171 8 d2cyya2 33.9 10 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 9 c3ibwA_ 32.7 15 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 10 c2zbcH_ 32.6 12 PDB header:transcription Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc; PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7. 11 d1kkha2 31.9 14 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate kinase 12 c1fpqA_ 31.6 27 PDB header:transferase Chain: A: PDB Molecule:isoliquiritigenin 2'-o-methyltransferase; PDBTitle: crystal structure analysis of selenomethionine substituted chalcone o-2 methyltransferase 13 d1ewqa2 31.4 39 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 14 d1weya_ 31.3 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 15 c2nyiB_ 31.2 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 16 d1p65a_ 31.0 26 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Arterivirus nucleocapsid protein 17 c1p65A_ 31.0 26 PDB header:viral protein Chain: A: PDB Molecule:nucleocapsid protein; PDBTitle: crystal structure of the nucleocapsid protein of porcine reproductive2 and respiratory syndrome virus (prrsv) 18 c3k2qA_ 29.2 24 PDB header:transferase Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase; PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88 19 d2f1fa2 26.5 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 20 d2pc6a1 25.4 20 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 21 d2ex4a1 not modelled 23.4 30 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:AD-003 protein-like 22 d1ub9a_ not modelled 23.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 23 d1k47a2 not modelled 22.9 10 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Phosphomevalonate kinase (PMK) 24 c2b8kD_ not modelled 22.9 21 PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase ii 32 kda PDBTitle: 12-subunit rna polymerase ii 25 c3l7pA_ not modelled 22.3 23 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 26 c3s01A_ not modelled 22.2 14 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution 27 d1kkca2 not modelled 22.2 32 Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain 28 d1gtra1 not modelled 22.0 13 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain 29 c3lk7A_ not modelled 21.2 18 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a 30 d1wb9a2 not modelled 21.1 44 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 31 d2nzca1 not modelled 20.9 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 32 d1jr3d2 not modelled 20.7 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 33 d1i1ga2 not modelled 19.9 15 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 34 d4pfka_ not modelled 19.9 26 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 35 c2e1cA_ not modelled 19.5 10 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 36 d2ev0a2 not modelled 19.1 28 Fold:Iron-dependent repressor protein, dimerization domain Superfamily:Iron-dependent repressor protein, dimerization domain Family:Iron-dependent repressor protein, dimerization domain 37 d1fima_ not modelled 19.0 7 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 38 d1y14a_ not modelled 18.7 21 Fold:SAM domain-like Superfamily:HRDC-like Family:RNA polymerase II subunit RBP4 (RpoF) 39 c1kyzC_ not modelled 18.7 30 PDB header:transferase Chain: C: PDB Molecule:caffeic acid 3-o-methyltransferase; PDBTitle: crystal structure analysis of caffeic acid/5-hydroxyferulic2 acid 3/5-o-methyltransferase ferulic acid complex 40 c3dx5A_ not modelled 18.6 13 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 41 c3canA_ not modelled 18.4 22 PDB header:lyase activator Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme; PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482 42 d1p9qc2 not modelled 18.2 13 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein AF0491, N-terminal domain 43 d1ul3a_ not modelled 17.9 19 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 44 d2r9ga1 not modelled 17.8 13 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:MgsA/YrvN C-terminal domain-like 45 d2auna2 not modelled 17.5 15 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 46 c2cveA_ not modelled 17.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 47 d1qmha1 not modelled 16.7 29 Fold:Thioredoxin fold Superfamily:RNA 3'-terminal phosphate cyclase, RPTC, insert domain Family:RNA 3'-terminal phosphate cyclase, RPTC, insert domain 48 c1ewrA_ not modelled 16.6 39 PDB header:hydrolase Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure of taq muts 49 d2cg4a2 not modelled 16.4 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 50 d3ctda1 not modelled 16.2 13 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:MgsA/YrvN C-terminal domain-like 51 c2k6xA_ not modelled 15.8 28 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure 52 c1d1rA_ not modelled 15.5 21 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 11.4 kd protein ycih in pyrf-osmb PDBTitle: nmr solution structure of the product of the e. coli ycih2 gene. 53 d1d1ra_ not modelled 15.5 21 Fold:eIF1-like Superfamily:eIF1-like Family:eIF1-like 54 d1cc8a_ not modelled 15.4 23 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 55 c1zxxA_ not modelled 15.4 22 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii 56 c1qr6A_ not modelled 15.3 13 PDB header:oxidoreductase Chain: A: PDB Molecule:malic enzyme 2; PDBTitle: human mitochondrial nad(p)-dependent malic enzyme 57 d3bgea1 not modelled 15.3 13 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:MgsA/YrvN C-terminal domain-like 58 d1gd0a_ not modelled 15.1 11 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 59 c1o0sB_ not modelled 15.1 14 PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent malic enzyme; PDBTitle: crystal structure of ascaris suum malic enzyme complexed with nadh 60 c3thxB_ not modelled 15.0 39 PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh3; PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp 61 c1ewqA_ not modelled 14.7 39 PDB header:replication/dna Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution 62 d1pfka_ not modelled 14.6 22 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 63 c1b4aA_ not modelled 14.3 15 PDB header:repressor Chain: A: PDB Molecule:arginine repressor; PDBTitle: structure of the arginine repressor from bacillus stearothermophilus 64 d2gdga1 not modelled 14.2 7 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 65 d2vv5a2 not modelled 14.0 11 Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain 66 c2o8dB_ not modelled 14.0 35 PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair 67 c3ctdB_ not modelled 13.9 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative atpase, aaa family; PDBTitle: crystal structure of a putative aaa family atpase from2 prochlorococcus marinus subsp. pastoris 68 c3iwcD_ not modelled 13.7 20 PDB header:lyase Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase; PDBTitle: t. maritima adometdc complex with s-adenosylmethionine2 methyl ester 69 c3fybA_ not modelled 13.6 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function (duf1244); PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis 70 c3b64A_ not modelled 13.5 14 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major 71 d2fgca1 not modelled 13.4 20 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 72 d2f06a1 not modelled 13.1 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 73 d2o35a1 not modelled 13.0 29 Fold:SMc04008-like Superfamily:SMc04008-like Family:SMc04008-like 74 c2o35A_ not modelled 13.0 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf1244; PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti 75 c1i1gA_ not modelled 12.7 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 76 c3ereD_ not modelled 12.5 18 PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator 77 d1xtpa_ not modelled 12.5 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:AD-003 protein-like 78 c2pc6C_ not modelled 12.4 20 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 79 d1pkxa1 not modelled 12.2 14 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Inosicase 80 c2e1aD_ not modelled 12.1 13 PDB header:transcription Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc; PDBTitle: crystal structure of ffrp-dm1 81 c3k85B_ not modelled 11.9 23 PDB header:transferase Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase; PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron 82 d2fxaa1 not modelled 11.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 83 c3ia1A_ not modelled 11.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin; PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus 84 d2adca1 not modelled 11.9 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 85 c2w2uA_ not modelled 11.9 25 PDB header:hydrolase/transport Chain: A: PDB Molecule:hypothetical p60 katanin; PDBTitle: structural insight into the interaction between archaeal2 escrt-iii and aaa-atpase 86 c2qt7B_ not modelled 11.8 18 PDB header:hydrolase Chain: B: PDB Molecule:receptor-type tyrosine-protein phosphatase-like PDBTitle: crystallographic structure of the mature ectodomain of the2 human receptor-type protein-tyrosine phosphatase ia-2 at3 1.30 angstroms 87 c2i38A_ not modelled 11.7 17 PDB header:rna binding protein/chimera Chain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20 88 d2u1aa_ not modelled 11.6 10 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 89 c2cb4D_ not modelled 11.5 40 PDB header:toxin Chain: D: PDB Molecule:mosquitocidal toxin; PDBTitle: crystal structure of the catalytic domain of the2 mosquitocidal toxin from bacillus sphaericus, mutant e197q 90 d1vr7a1 not modelled 11.4 20 Fold:S-adenosylmethionine decarboxylase Superfamily:S-adenosylmethionine decarboxylase Family:Bacterial S-adenosylmethionine decarboxylase 91 c3p6lA_ not modelled 11.3 17 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 92 d1fp1d2 not modelled 11.3 27 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Plant O-methyltransferase, C-terminal domain 93 c3jz3B_ not modelled 11.2 30 PDB header:transferase Chain: B: PDB Molecule:sensor protein qsec; PDBTitle: structure of the cytoplasmic segment of histidine kinase qsec 94 c2d9oA_ not modelled 11.1 8 PDB header:rna binding protein Chain: A: PDB Molecule:dnaj (hsp40) homolog, subfamily c, member 17; PDBTitle: solution structure of rna binding domain in hypothetical2 protein flj10634 95 c2p6tH_ not modelled 11.1 16 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis 96 c2vxcA_ not modelled 11.0 12 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9; PDBTitle: structure of the crb2-brct2 domain complex with2 phosphopeptide. 97 d1mwza_ not modelled 10.9 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 98 c2o8bA_ not modelled 10.9 48 PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair 99 c1wbdA_ not modelled 10.8 39 PDB header:dna-binding Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure of e. coli dna mismatch repair enzyme2 muts, e38q mutant, in complex with a g.t mismatch

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0