BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (62 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADJ3 Uncharacterized protein yhjR n=97 Tax=Enterobact... 126 2e-28 UniRef50_D2TJX2 Putative uncharacterized protein n=1 Tax=Citroba... 102 5e-21 UniRef50_A8G816 Putative uncharacterized protein n=7 Tax=Enterob... 55 9e-07 UniRef50_C6DGQ3 Putative uncharacterized protein n=5 Tax=Pectoba... 47 1e-04 UniRef50_D0ZGP6 Putative uncharacterized protein n=1 Tax=Edwards... 42 0.005 UniRef50_C8QCT2 Putative uncharacterized protein n=1 Tax=Pantoea... 40 0.018 UniRef50_A5W2B3 Putative uncharacterized protein n=3 Tax=Pseudom... 40 0.034 >UniRef50_P0ADJ3 Uncharacterized protein yhjR n=97 Tax=Enterobacteriaceae RepID=YHJR_ECOLI Length = 62 Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 62/62 (100%), Positives = 62/62 (100%) Query: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ Sbjct: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 Query: 61 QK 62 QK Sbjct: 61 QK 62 >UniRef50_D2TJX2 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJX2_CITRO Length = 62 Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 47/62 (75%), Positives = 54/62 (87%) Query: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 M++NEPDT D A+GY FQND +AL QAFSLP+ DY DISQREQLAAA+KRWPLLAEFAQ Sbjct: 1 MSDNEPDTQSDSALGYTFQNDFLALSQAFSLPEFDYTDISQREQLAAAIKRWPLLAEFAQ 60 Query: 61 QK 62 Q+ Sbjct: 61 QQ 62 >UniRef50_A8G816 Putative uncharacterized protein n=7 Tax=Enterobacteriaceae RepID=A8G816_SERP5 Length = 63 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 31/42 (73%) Query: 19 QNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 Q+D++AL AFSLP + Y DIS++E+L + RWPLLAE Q Sbjct: 17 QDDLLALSHAFSLPKLSYIDISRQERLTQMMTRWPLLAELVQ 58 >UniRef50_C6DGQ3 Putative uncharacterized protein n=5 Tax=Pectobacterium RepID=C6DGQ3_PECCP Length = 69 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 3 NNEPDTLPDPAIGYIFQN-----DIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAE 57 NNEP A + +N D+ L QAFSLP+I+Y DI+++ +L+ + RWPLL E Sbjct: 2 NNEPTRRDTSARADLTENARTEDDLRVLSQAFSLPEINYIDIARQARLSQMMARWPLLDE 61 Query: 58 FAQ 60 + Sbjct: 62 LKE 64 >UniRef50_D0ZGP6 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZGP6_EDWTE Length = 67 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Query: 8 TLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 T P P+ D+ L++ + + DIDY +I + E + AL+RWPLLAE Q Sbjct: 9 TAPTPS----SSEDLAVLQRIYGIMDIDYVNIVRIEHVNKALERWPLLAECRQ 57 >UniRef50_C8QCT2 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8QCT2_9ENTR Length = 64 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 26/41 (63%) Query: 19 QNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFA 59 Q+DI L +AFSL Y DI++ E+L + L WPLL E + Sbjct: 17 QDDINTLSEAFSLKAFRYIDIAREERLNSILSSWPLLQELS 57 >UniRef50_A5W2B3 Putative uncharacterized protein n=3 Tax=Pseudomonas putida RepID=A5W2B3_PSEP1 Length = 72 Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 20 NDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 +DI L+Q +P+++Y DIS + AL+RWPLL E + Sbjct: 13 DDIAQLRQHLDMPELNYQDISMLVGVQQALQRWPLLGESCR 53 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADJ3 Uncharacterized protein yhjR n=97 Tax=Enterobact... 98 7e-20 UniRef50_D2TJX2 Putative uncharacterized protein n=1 Tax=Citroba... 92 5e-18 UniRef50_C6DGQ3 Putative uncharacterized protein n=5 Tax=Pectoba... 78 7e-14 UniRef50_A8G816 Putative uncharacterized protein n=7 Tax=Enterob... 74 2e-12 Sequences not found previously or not previously below threshold: UniRef50_C8QCT2 Putative uncharacterized protein n=1 Tax=Pantoea... 46 3e-04 UniRef50_D0ZGP6 Putative uncharacterized protein n=1 Tax=Edwards... 41 0.010 UniRef50_A5W2B3 Putative uncharacterized protein n=3 Tax=Pseudom... 39 0.059 >UniRef50_P0ADJ3 Uncharacterized protein yhjR n=97 Tax=Enterobacteriaceae RepID=YHJR_ECOLI Length = 62 Score = 98.3 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 62/62 (100%), Positives = 62/62 (100%) Query: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ Sbjct: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 Query: 61 QK 62 QK Sbjct: 61 QK 62 >UniRef50_D2TJX2 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJX2_CITRO Length = 62 Score = 92.1 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 47/62 (75%), Positives = 54/62 (87%) Query: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 M++NEPDT D A+GY FQND +AL QAFSLP+ DY DISQREQLAAA+KRWPLLAEFAQ Sbjct: 1 MSDNEPDTQSDSALGYTFQNDFLALSQAFSLPEFDYTDISQREQLAAAIKRWPLLAEFAQ 60 Query: 61 QK 62 Q+ Sbjct: 61 QQ 62 >UniRef50_C6DGQ3 Putative uncharacterized protein n=5 Tax=Pectobacterium RepID=C6DGQ3_PECCP Length = 69 Score = 78.2 bits (191), Expect = 7e-14, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 3 NNEPDTLPDPAIGYIFQN-----DIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAE 57 NNEP A + +N D+ L QAFSLP+I+Y DI+++ +L+ + RWPLL E Sbjct: 2 NNEPTRRDTSARADLTENARTEDDLRVLSQAFSLPEINYIDIARQARLSQMMARWPLLDE 61 Query: 58 FAQ 60 + Sbjct: 62 LKE 64 >UniRef50_A8G816 Putative uncharacterized protein n=7 Tax=Enterobacteriaceae RepID=A8G816_SERP5 Length = 63 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 34/57 (59%) Query: 4 NEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 N T + Q+D++AL AFSLP + Y DIS++E+L + RWPLLAE Q Sbjct: 2 NNQLTRFHAVVAPETQDDLLALSHAFSLPKLSYIDISRQERLTQMMTRWPLLAELVQ 58 >UniRef50_C8QCT2 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8QCT2_9ENTR Length = 64 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 19 QNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQQK 62 Q+DI L +AFSL Y DI++ E+L + L WPLL E + + Sbjct: 17 QDDINTLSEAFSLKAFRYIDIAREERLNSILSSWPLLQELSATQ 60 >UniRef50_D0ZGP6 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZGP6_EDWTE Length = 67 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 20 NDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 D+ L++ + + DIDY +I + E + AL+RWPLLAE Q Sbjct: 17 EDLAVLQRIYGIMDIDYVNIVRIEHVNKALERWPLLAECRQ 57 >UniRef50_A5W2B3 Putative uncharacterized protein n=3 Tax=Pseudomonas putida RepID=A5W2B3_PSEP1 Length = 72 Score = 38.6 bits (88), Expect = 0.059, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 20 NDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAE 57 +DI L+Q +P+++Y DIS + AL+RWPLL E Sbjct: 13 DDIAQLRQHLDMPELNYQDISMLVGVQQALQRWPLLGE 50 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADJ3 Uncharacterized protein yhjR n=97 Tax=Enterobact... 95 6e-19 UniRef50_D2TJX2 Putative uncharacterized protein n=1 Tax=Citroba... 89 5e-17 UniRef50_A8G816 Putative uncharacterized protein n=7 Tax=Enterob... 88 1e-16 UniRef50_C6DGQ3 Putative uncharacterized protein n=5 Tax=Pectoba... 76 3e-13 UniRef50_C8QCT2 Putative uncharacterized protein n=1 Tax=Pantoea... 62 7e-09 Sequences not found previously or not previously below threshold: UniRef50_D0ZGP6 Putative uncharacterized protein n=1 Tax=Edwards... 46 5e-04 UniRef50_A5W2B3 Putative uncharacterized protein n=3 Tax=Pseudom... 39 0.058 >UniRef50_P0ADJ3 Uncharacterized protein yhjR n=97 Tax=Enterobacteriaceae RepID=YHJR_ECOLI Length = 62 Score = 95.3 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 62/62 (100%), Positives = 62/62 (100%) Query: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ Sbjct: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 Query: 61 QK 62 QK Sbjct: 61 QK 62 >UniRef50_D2TJX2 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJX2_CITRO Length = 62 Score = 88.7 bits (218), Expect = 5e-17, Method: Composition-based stats. Identities = 47/62 (75%), Positives = 54/62 (87%) Query: 1 MNNNEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 M++NEPDT D A+GY FQND +AL QAFSLP+ DY DISQREQLAAA+KRWPLLAEFAQ Sbjct: 1 MSDNEPDTQSDSALGYTFQNDFLALSQAFSLPEFDYTDISQREQLAAAIKRWPLLAEFAQ 60 Query: 61 QK 62 Q+ Sbjct: 61 QQ 62 >UniRef50_A8G816 Putative uncharacterized protein n=7 Tax=Enterobacteriaceae RepID=A8G816_SERP5 Length = 63 Score = 87.6 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 34/57 (59%) Query: 4 NEPDTLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 N T + Q+D++AL AFSLP + Y DIS++E+L + RWPLLAE Q Sbjct: 2 NNQLTRFHAVVAPETQDDLLALSHAFSLPKLSYIDISRQERLTQMMTRWPLLAELVQ 58 >UniRef50_C6DGQ3 Putative uncharacterized protein n=5 Tax=Pectobacterium RepID=C6DGQ3_PECCP Length = 69 Score = 76.0 bits (185), Expect = 3e-13, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 3 NNEPDTLPDPAIGYIFQN-----DIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAE 57 NNEP A + +N D+ L QAFSLP+I+Y DI+++ +L+ + RWPLL E Sbjct: 2 NNEPTRRDTSARADLTENARTEDDLRVLSQAFSLPEINYIDIARQARLSQMMARWPLLDE 61 Query: 58 FAQ 60 + Sbjct: 62 LKE 64 >UniRef50_C8QCT2 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8QCT2_9ENTR Length = 64 Score = 61.7 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 19 QNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQQK 62 Q+DI L +AFSL Y DI++ E+L + L WPLL E + + Sbjct: 17 QDDINTLSEAFSLKAFRYIDIAREERLNSILSSWPLLQELSATQ 60 >UniRef50_D0ZGP6 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZGP6_EDWTE Length = 67 Score = 45.6 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 8 TLPDPAIGYIFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQ 60 T A D+ L++ + + DIDY +I + E + AL+RWPLLAE Q Sbjct: 5 TKYRTAPTPSSSEDLAVLQRIYGIMDIDYVNIVRIEHVNKALERWPLLAECRQ 57 >UniRef50_A5W2B3 Putative uncharacterized protein n=3 Tax=Pseudomonas putida RepID=A5W2B3_PSEP1 Length = 72 Score = 38.6 bits (88), Expect = 0.058, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 20 NDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAE 57 +DI L+Q +P+++Y DIS + AL+RWPLL E Sbjct: 13 DDIAQLRQHLDMPELNYQDISMLVGVQQALQRWPLLGE 50 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.298 0.123 0.311 Lambda K H 0.267 0.0380 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 302,336,539 Number of Sequences: 3077464 Number of extensions: 7450853 Number of successful extensions: 16842 Number of sequences better than 1.0e-01: 7 Number of HSP's better than 0.1 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16819 Number of HSP's gapped (non-prelim): 21 length of query: 62 length of database: 1,040,396,356 effective HSP length: 34 effective length of query: 28 effective length of database: 935,762,580 effective search space: 26201352240 effective search space used: 26201352240 T: 11 A: 40 X1: 16 ( 6.9 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 87 (38.2 bits)