BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (353 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_C3PGY9 Protein recA n=2887 Tax=root RepID=RECA_CORA7 443 e-123 UniRef50_C8PSA2 Protein recA n=1 Tax=Treponema vincentii ATCC 35... 417 e-115 UniRef50_P65982 Protein recA n=985 Tax=cellular organisms RepID=... 415 e-114 UniRef50_B2S3T1 Protein recA n=947 Tax=cellular organisms RepID=... 399 e-109 UniRef50_B0MMT9 Protein recA n=3 Tax=Bacteria RepID=B0MMT9_9FIRM 391 e-107 UniRef50_A3ZNU6 Protein recA n=4 Tax=Bacteria RepID=A3ZNU6_9PLAN 387 e-106 UniRef50_C2F9G8 Protein recA n=1 Tax=Lactobacillus paracasei sub... 384 e-105 UniRef50_B5RLK6 Protein recA n=43 Tax=cellular organisms RepID=R... 381 e-104 UniRef50_Q39199 DNA repair protein recA homolog 1, chloroplastic... 371 e-101 UniRef50_C1E9Q3 RecA DNA recombinase n=3 Tax=Viridiplantae RepID... 363 3e-99 UniRef50_B5YLR6 Predicted protein n=1 Tax=Thalassiosira pseudona... 353 6e-96 UniRef50_B7FQ63 Chloroplast-targeted nuclear-encoded recombinase... 350 4e-95 UniRef50_A8I670 Chloroplast RecA recombination protein n=3 Tax=C... 348 2e-94 UniRef50_C0R0F2 Protein recA n=3 Tax=Bacteria RepID=C0R0F2_BRAHW 347 4e-94 UniRef50_Q9ZUP2 DNA repair protein recA homolog 3, mitochondrial... 344 2e-93 UniRef50_C1TRT4 Protein recA n=2 Tax=Synergistaceae RepID=C1TRT4... 340 3e-92 UniRef50_A4PHN2 RecA n=1 Tax=Physcomitrella patens RepID=A4PHN2_... 317 3e-85 UniRef50_Q8EVC7 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCPE 303 7e-81 UniRef50_Q6ASS3 DNA repair protein recA, putative n=2 Tax=cellul... 290 6e-77 UniRef50_P47581 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCGE 277 5e-73 UniRef50_P35901 Mle recA intein n=1019 Tax=root RepID=RECA_MYCLE 276 1e-72 UniRef50_B1AI69 Protein recA n=15 Tax=Ureaplasma RepID=RECA_UREP2 271 2e-71 UniRef50_Q59486 Protein recA, plasmid n=3 Tax=Lactococcus lactis... 267 5e-70 UniRef50_D1IJ27 Whole genome shotgun sequence of line PN40024, s... 255 2e-66 UniRef50_C7T573 Protein recA n=1 Tax=Pseudomonas putida RepID=C7... 251 4e-65 UniRef50_A0MN30 RecA/RadA recombinase n=1 Tax=Thermus phage phiY... 234 4e-60 UniRef50_A4AAG4 RecA bacterial DNA recombination protein n=1 Tax... 232 1e-59 UniRef50_Q05FN0 Protein recA n=1 Tax=Candidatus Carsonella ruddi... 232 1e-59 UniRef50_Q8RY99 DNA repair protein recA homolog 2, mitochondrial... 230 5e-59 UniRef50_Q8L1K7 Glutamine synthetase 1 (Fragment) n=8 Tax=Rhizob... 229 2e-58 UniRef50_Q3F0X4 RecA protein n=2 Tax=Bacillus thuringiensis RepI... 224 5e-57 UniRef50_B9EWE7 Putative uncharacterized protein n=3 Tax=Poaceae... 207 3e-52 UniRef50_A7KV38 RecA n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7... 174 6e-42 UniRef50_D1ZY30 Whole genome shotgun sequence assembly, contig_3... 169 1e-40 UniRef50_A0A7C2 RecA recombinase n=1 Tax=Microcystis aeruginosa ... 160 9e-38 UniRef50_Q02AB2 Protein recA n=1 Tax=Candidatus Solibacter usita... 155 3e-36 UniRef50_A5LPZ1 Recombinase A n=1 Tax=Streptococcus pneumoniae S... 145 1e-33 UniRef50_Q6Y3G2 RecA (Fragment) n=1 Tax=Geobacter hydrogenophilu... 137 7e-31 UniRef50_A8L2Z2 RecA domain protein n=1 Tax=Frankia sp. EAN1pec ... 134 4e-30 UniRef50_A4TT30 Recombinase n=19 Tax=Enterobacteriaceae RepID=A4... 134 7e-30 UniRef50_B9H9J7 Predicted protein n=1 Tax=Populus trichocarpa Re... 125 2e-27 UniRef50_C7F8K4 Recombination repair protein n=1 Tax=Bacillus ph... 122 2e-26 UniRef50_A8ASX5 Gp141 n=3 Tax=unclassified SPO1-like viruses Rep... 113 1e-23 UniRef50_C0AXS3 Putative uncharacterized protein n=1 Tax=Proteus... 109 1e-22 UniRef50_Q4Z9W4 ORF021 n=4 Tax=unclassified SPO1-like viruses Re... 109 2e-22 UniRef50_B5LJG5 Gp193 n=9 Tax=unclassified Myoviridae RepID=B5LJ... 106 1e-21 UniRef50_C4Z5Y6 Protein recA n=1 Tax=Eubacterium eligens ATCC 27... 105 4e-21 UniRef50_Q94CQ8 P0660F12.22 protein n=1 Tax=Oryza sativa Japonic... 100 6e-20 UniRef50_Q555F1 Putative uncharacterized protein n=1 Tax=Dictyos... 98 4e-19 UniRef50_UPI0001BCAEAD recA protein n=1 Tax=Fusobacterium period... 96 3e-18 UniRef50_Q5ULR1 Recombinase A n=1 Tax=Lactobacillus phage LP65 R... 93 2e-17 UniRef50_UPI0001AF06D9 RecA-like recombinase n=1 Tax=Acinetobact... 87 7e-16 UniRef50_C1KFR4 Putative recombinase A n=1 Tax=Lactobacillus pha... 86 2e-15 UniRef50_B9L413 RecA protein n=1 Tax=Thermomicrobium roseum DSM ... 77 7e-13 UniRef50_Q1IJA5 RecA/RadA recombinase-like n=1 Tax=Candidatus Ko... 77 1e-12 UniRef50_Q01QX0 RecA domain protein n=1 Tax=Candidatus Solibacte... 75 4e-12 UniRef50_Q1D5A2 Putative recA protein n=2 Tax=Cystobacterineae R... 72 2e-11 UniRef50_C2BP13 Putative uncharacterized protein (Fragment) n=1 ... 68 6e-10 UniRef50_P04529 Recombination and repair protein n=12 Tax=T4-lik... 66 2e-09 UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Ta... 65 3e-09 UniRef50_Q7Y594 UvsX RecA-like recombination protein n=3 Tax=unc... 65 4e-09 UniRef50_A4WN87 DNA repair and recombination protein radA n=17 T... 64 1e-08 UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Ta... 63 1e-08 UniRef50_C8XUF9 UvsX RecA-like recombination protein n=1 Tax=Shi... 62 3e-08 UniRef50_Q14565 Meiotic recombination protein DMC1/LIM15 homolog... 61 8e-08 UniRef50_C1F5L9 Putative uncharacterized protein n=2 Tax=Acidoba... 60 8e-08 UniRef50_D2EF50 DNA repair and recombination protein RadA n=1 Ta... 60 1e-07 UniRef50_C1AAH5 RecA protein homolog n=1 Tax=Gemmatimonas aurant... 60 2e-07 UniRef50_A8AB83 DNA repair and recombination protein radA n=16 T... 59 3e-07 UniRef50_Q5GQK3 RecA-like recombination protein n=6 Tax=root Rep... 59 3e-07 UniRef50_O27728 DNA repair and recombination protein radB n=1 Ta... 59 4e-07 UniRef50_Q39009 Meiotic recombination protein DMC1 homolog n=49 ... 56 2e-06 UniRef50_P37384 Meiotic recombination protein DMC1 homolog n=10 ... 56 3e-06 UniRef50_Q8TWK1 RadA recombinase n=1 Tax=Methanopyrus kandleri R... 55 3e-06 UniRef50_Q8TVF0 RadA recombinase n=1 Tax=Methanopyrus kandleri R... 55 3e-06 UniRef50_A0RYZ3 RecA/RadA recombinase related protein n=1 Tax=Ce... 54 7e-06 UniRef50_C1SIU0 RecA bacterial DNA recombination protein n=1 Tax... 54 9e-06 UniRef50_UPI0001742DF1 hypothetical protein cdivTM_26973 n=1 Tax... 53 1e-05 UniRef50_A2SR54 DNA repair and recombination protein radA n=31 T... 53 1e-05 UniRef50_UPI00016981C8 recombinase A n=1 Tax=Endoriftia persepho... 53 1e-05 UniRef50_Q6YPL0 Putative uncharacterized protein n=1 Tax=Onion y... 53 2e-05 UniRef50_C1FJ81 DMC1 DNA recombinase n=5 Tax=Chlorophyta RepID=C... 53 2e-05 UniRef50_Q8IB05 Meiotic recombination protein dmc1-like protein ... 53 2e-05 UniRef50_Q95Q25 Protein Y43C5A.6a, confirmed by transcript evide... 53 2e-05 UniRef50_A4YCN4 DNA repair and recombination protein radA n=12 T... 53 2e-05 UniRef50_B2ZYC0 Rec A-like recombinase n=1 Tax=Ralstonia phage R... 53 2e-05 UniRef50_O93748 DNA repair and recombination protein radA n=3 Ta... 51 5e-05 UniRef50_Q4N2W2 DNA repair protein rad51, putative n=2 Tax=Eukar... 51 5e-05 UniRef50_Q013L3 DNA repair protein RAD51/RHP55 (ISS) n=2 Tax=Chl... 50 1e-04 UniRef50_C6T5Z5 Putative uncharacterized protein n=1 Tax=Glycine... 50 1e-04 UniRef50_A4FYL0 DNA repair and recombination protein radB n=10 T... 50 1e-04 UniRef50_A6STQ0 Putative uncharacterized protein n=1 Tax=Botryot... 50 1e-04 UniRef50_Q5A2U1 Putative uncharacterized protein RAD57 n=1 Tax=C... 50 2e-04 UniRef50_O28184 DNA repair and recombination protein radB n=3 Ta... 50 2e-04 UniRef50_A8TH99 AAA ATPase n=1 Tax=Methanococcus voltae A3 RepID... 50 2e-04 UniRef50_B0R636 DNA repair and recombination protein radB n=4 Ta... 49 2e-04 UniRef50_A9FIX3 RecA recombinase homolog n=1 Tax=Sorangium cellu... 49 3e-04 UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickett... 49 3e-04 UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacte... 49 3e-04 UniRef50_Q977U1 RecA-like protein (Fragment) n=2 Tax=Thermoprote... 49 4e-04 UniRef50_B5IFC8 Putative uncharacterized protein n=2 Tax=Aciduli... 49 4e-04 UniRef50_A3ZPQ5 Putative uncharacterized protein n=1 Tax=Blastop... 48 5e-04 UniRef50_B5JLQ1 Putative uncharacterized protein n=1 Tax=Verruco... 48 5e-04 UniRef50_UPI0000D55904 PREDICTED: similar to Dmc1 homolog n=1 Ta... 48 5e-04 UniRef50_C5KD76 Meiotic recombination protein DMC1, putative n=2... 48 6e-04 UniRef50_A7ATP8 Rad51 protein, putative n=1 Tax=Babesia bovis Re... 47 8e-04 UniRef50_C5A470 RecA family AAA ATPase n=2 Tax=Thermococcus RepI... 47 8e-04 UniRef50_C6A0N1 DNA repair and recombination protein radB n=9 Ta... 47 8e-04 UniRef50_D1H4V0 Whole genome shotgun sequence of line PN40024, s... 47 9e-04 UniRef50_B4SN90 Non-specific serine/threonine protein kinase n=2... 47 0.001 UniRef50_A3LTU6 Predicted protein n=1 Tax=Pichia stipitis RepID=... 47 0.001 UniRef50_C1MTK4 Rad51 DNA recombinase 1 n=1 Tax=Micromonas pusil... 47 0.001 UniRef50_Q6BWA8 DEHA2B13024p n=2 Tax=Debaryomyces hansenii RepID... 47 0.001 UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B... 47 0.001 UniRef50_B9WC87 DNA repair protein, putative n=1 Tax=Candida dub... 47 0.001 UniRef50_B5I9Z9 KaiC domain protein n=3 Tax=Aciduliprofundum boo... 47 0.001 UniRef50_P25453 Meiotic recombination protein DMC1 n=38 Tax=Sacc... 46 0.002 UniRef50_B6HD82 Pc20g01450 protein n=1 Tax=Penicillium chrysogen... 46 0.002 UniRef50_B9LPC6 DNA repair and recombination protein RadB n=7 Ta... 46 0.003 UniRef50_Q06609 DNA repair protein RAD51 homolog 1 n=385 Tax=Euk... 45 0.003 UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B... 45 0.004 UniRef50_Q2USE9 Predicted protein n=9 Tax=Trichocomaceae RepID=Q... 45 0.004 UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium m... 45 0.004 UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q... 45 0.005 UniRef50_O29896 Putative uncharacterized protein n=2 Tax=Archaeo... 45 0.005 UniRef50_Q2IEE4 Putative circadian clock protein, KaiC n=1 Tax=A... 44 0.006 UniRef50_Q467E5 Putative uncharacterized protein n=3 Tax=Methano... 44 0.006 UniRef50_D2VU64 Predicted protein n=1 Tax=Naegleria gruberi RepI... 44 0.007 UniRef50_Q12U80 DNA repair and recombination protein radB n=8 Ta... 44 0.007 UniRef50_B6K0Z0 Recombinational DNA repair protein Rhp55p n=1 Ta... 44 0.009 UniRef50_B6UY07 Spindle A (Fragment) n=6 Tax=melanogaster subgro... 44 0.009 UniRef50_Q0W872 Predicted RecA-family ATPase n=2 Tax=Euryarchaeo... 44 0.010 UniRef50_B7GAG1 Rad51 DNA recombination/repair protein n=1 Tax=P... 44 0.010 UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales Re... 44 0.010 UniRef50_C1EGX8 Rad51 DNA recombinase 2 n=2 Tax=Micromonas RepID... 44 0.010 UniRef50_A5UKT8 DNA repair and recombination protein radB n=4 Ta... 44 0.011 UniRef50_B2WMH4 Putative uncharacterized protein n=2 Tax=Pleospo... 44 0.011 UniRef50_Q3JBH0 KaiC n=3 Tax=Chromatiales RepID=Q3JBH0_NITOC 44 0.012 UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickett... 44 0.012 UniRef50_A8N2F5 Putative uncharacterized protein n=1 Tax=Coprino... 43 0.013 UniRef50_Q386Q5 Recombinase Rad51, putative n=2 Tax=Trypanosoma ... 43 0.013 UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibac... 43 0.014 UniRef50_C5M7H8 Putative uncharacterized protein n=2 Tax=Candida... 43 0.016 UniRef50_Q4CZQ5 DNA repair protein, putative n=2 Tax=Trypanosoma... 43 0.017 UniRef50_Q9LPN8 F18K10.22 protein n=1 Tax=Arabidopsis thaliana R... 43 0.021 UniRef50_Q5V5J9 RecA/helicase-like n=1 Tax=Haloarcula marismortu... 42 0.025 UniRef50_A4R1B5 Putative uncharacterized protein n=1 Tax=Magnapo... 42 0.028 UniRef50_Q12XV7 KaiC domain-containing protein n=1 Tax=Methanoco... 42 0.029 UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquifica... 42 0.030 UniRef50_A9A126 RecA/RadA recombinase-like protein n=1 Tax=Nitro... 42 0.030 UniRef50_UPI0001C1618D hypothetical protein CRD_02017 n=1 Tax=Ra... 42 0.030 UniRef50_A1WXU4 SOS cell division inhibitor SulA n=1 Tax=Halorho... 42 0.036 UniRef50_B2B0Y8 Predicted CDS Pa_3_7770 n=1 Tax=Podospora anseri... 42 0.038 UniRef50_C6A5H8 ATPase, RecA superfamily n=4 Tax=Thermococcus Re... 42 0.038 UniRef50_Q67LV6 Conserved domain protein n=1 Tax=Symbiobacterium... 42 0.039 UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp... 42 0.041 UniRef50_A6G591 Putative uncharacterized protein n=1 Tax=Plesioc... 42 0.047 UniRef50_C3XRY9 Putative uncharacterized protein n=1 Tax=Branchi... 42 0.049 UniRef50_B6YWB4 ATPase n=3 Tax=Thermococcus RepID=B6YWB4_THEON 41 0.050 UniRef50_A8IRH2 RecA-like protein n=1 Tax=Chlamydomonas reinhard... 41 0.059 UniRef50_B5IA62 DNA repair and recombination protein RadB n=2 Ta... 41 0.059 UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae R... 41 0.060 UniRef50_O14129 DNA repair protein rhp55 n=1 Tax=Schizosaccharom... 41 0.062 UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium ... 41 0.066 UniRef50_D1ZTD1 Putative RAD55 protein n=1 Tax=Sordaria macrospo... 41 0.074 UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridi... 41 0.080 UniRef50_B8G8K6 Putative circadian clock protein, KaiC n=1 Tax=C... 40 0.092 UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas w... 40 0.096 UniRef50_B1L6V3 Rad51 domain protein n=1 Tax=Candidatus Korarcha... 40 0.096 >UniRef50_C3PGY9 Protein recA n=2887 Tax=root RepID=RECA_CORA7 Length = 377 Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/320 (65%), Positives = 262/320 (81%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 +++QKAL AA+ IEK FGKG++MRLG+D ++ IS+G+ ++DIALG GG P GRIVE Sbjct: 14 DDRQKALDAAMAMIEKDFGKGAVMRLGDDDRPPIQAISSGNTAIDIALGVGGFPRGRIVE 73 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYGPESSGKTT+ L IA+AQ+ G AFIDAEHALDP YAR LGVD DNLL SQPDTGE Sbjct: 74 IYGPESSGKTTVALHAIASAQKTGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTGE 133 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QALEI D L RSGA+D+IV+DSVAALTPKAEIEGE+GDSH+GL AR+MSQA+RK+ G L Sbjct: 134 QALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALY 193 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 S T IFINQ+R KIGVMFG+PETTTGG ALKFYASVR DIRRI +K+G++ +G+ T+ Sbjct: 194 NSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRTK 253 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 +KVVKNK++ PFK AEF I+YGEGI+ ++DLGV+ I+K+G+W++Y+G+++GQGK Sbjct: 254 LKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGKE 313 Query: 305 NATAWLKDNPETAKEIEKKV 324 A +LKDNP+ A EIEKK+ Sbjct: 314 KARNFLKDNPDLADEIEKKI 333 >UniRef50_C8PSA2 Protein recA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSA2_9SPIO Length = 441 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/350 (59%), Positives = 269/350 (76%), Gaps = 4/350 (1%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLG-EDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 + K KAL AA QIEK+FG+GS+M+LG + + +E I +GS+ LD ALG GG P GRI+ Sbjct: 18 DEKLKALEAARLQIEKEFGQGSLMKLGSKTEASGIEVIPSGSILLDEALGIGGYPRGRII 77 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 EI+GPESSGKTTL L V+A AQ+ G AF+DAEHALDP YA+KLGV+ID L +QPD G Sbjct: 78 EIFGPESSGKTTLALHVVAEAQKRGGIAAFVDAEHALDPQYAQKLGVNIDELWVAQPDAG 137 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQALEI + L RSGAVDVIVVDSVAALTP+AEI+GE+GDSHMGL AR+MSQA+RKL + Sbjct: 138 EQALEITENLVRSGAVDVIVVDSVAALTPQAEIDGEMGDSHMGLQARLMSQALRKLTAII 197 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV--KEGENVVGS 241 +S +LIFINQIRMKIG+ +GNPETTTGGNALKFY+SVR+++R+ G V K+ + G+ Sbjct: 198 SRSKCILIFINQIRMKIGIAYGNPETTTGGNALKFYSSVRIEVRK-GEVLGKDEDEAWGN 256 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 + R+KVVKNK+A PF++ E +IL+G+GI+ YG L+D VK +LI+K GAWYSYK +KIGQ Sbjct: 257 KVRIKVVKNKVAPPFRKVELEILFGKGISPYGSLLDCAVKYELIDKKGAWYSYKEDKIGQ 316 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351 G NA +L+DNP+ A ++EK +R L N F++ + E A++ E Sbjct: 317 GHDNAVKFLEDNPDVAIDLEKTLRARLFPNQKYVSSFAISNQESGADSGE 366 >UniRef50_P65982 Protein recA n=985 Tax=cellular organisms RepID=RECA_TROW8 Length = 437 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/347 (58%), Positives = 255/347 (73%), Gaps = 2/347 (0%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 N+ +AL AL I++Q+GKG++MR+ + + ++ I TGS++LD ALG GGLP GRIVEI Sbjct: 8 NRTRALELALANIDRQYGKGAVMRMNDAQKAYIDVIPTGSIALDYALGVGGLPRGRIVEI 67 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPESSGKTTLTL IA+ QR G AFIDAEHALDP YA+KLGVDID LL SQPD+GEQ Sbjct: 68 YGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDSGEQ 127 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 ALEI D L RS A+D+IV+DSVAAL P+AE+EG++GD H+GL AR+MSQA+RK+ L Q Sbjct: 128 ALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKITSGLNQ 187 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245 + T IFINQ+R K+GV FG+PETT GG ALKFYASVRLDIRR+ +K+G VG+ TRV Sbjct: 188 TGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNRTRV 247 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN 305 KVVKNK+A PFKQAEF +LYG GI+ L+D V +I+K+G+WY Y +++GQGK N Sbjct: 248 KVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLGQGKEN 307 Query: 306 ATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNED 352 A +L +N A EIE K+ LL N D D + T+ D Sbjct: 308 ARRFLLENKSVADEIENKIISLLGFRSNEFGDLP--DHDAAVRTSPD 352 >UniRef50_B2S3T1 Protein recA n=947 Tax=cellular organisms RepID=RECA_TREPS Length = 407 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 194/327 (59%), Positives = 255/327 (77%), Gaps = 2/327 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRIV 63 E K KAL AA QIEKQFG+GS+M+LG+D ++ VE I TG++ LD ALG GG P GRI+ Sbjct: 16 EEKMKALEAARLQIEKQFGQGSLMKLGKDDAVQGVEVIPTGNILLDEALGIGGYPRGRII 75 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 EI+GPESSGKTTL L +A AQ+ G AFIDAEHALDP YA+ LGV + +L SQPDTG Sbjct: 76 EIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQPDTG 135 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQALEI ++L RSGAVD+IVVDSVAALTP+AEI+G++GD+H+GL AR+MSQA+RKL + Sbjct: 136 EQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLTSII 195 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG-ENVVGSE 242 +S LIFINQ+RMKIG+MFGNPETTTGG ALKFY+SVR+++R++ + G E G++ Sbjct: 196 NKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAWGNK 255 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 R+++VKNK+A PF++ E +IL+G+G + + L+D VK+++IEK GAWY+Y+ EKIGQG Sbjct: 256 VRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKIGQG 315 Query: 303 KANATAWLKDNPETAKEIEKKVRELLL 329 + NA +L+ N + EIE+ VR L Sbjct: 316 RDNAVGFLQQNMDITLEIERAVRTKLF 342 >UniRef50_B0MMT9 Protein recA n=3 Tax=Bacteria RepID=B0MMT9_9FIRM Length = 419 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/324 (57%), Positives = 250/324 (77%), Gaps = 2/324 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGED--RSMDVETISTGSLSLDIALGAGGLPMGRI 62 E K+KAL A+ QI K +G+G++M LG + + +DVE++ TGS+ LD ALG GGLP GRI Sbjct: 20 EEKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRI 79 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 +EIYGPES GKTT+TL IA Q+ G AFID EHALDP+YA+ LGVDID+L+ SQPDT Sbjct: 80 IEIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDT 139 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 GEQALEI + LARSGA+D++V+DSVAA+ KAEI+GEIGDS +G+ AR+MS AMRKL Sbjct: 140 GEQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSV 199 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 + +SNT+ IFINQ+R KIGVM+GNPETT GG ALKFYASVR+++R+ + + ++G Sbjct: 200 ISKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYT 259 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 T+ KVVKNK+A PFK+ +F +++GEGI+ GE++ +G + I+K+GAWYSY GE++GQG Sbjct: 260 TKCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQG 319 Query: 303 KANATAWLKDNPETAKEIEKKVRE 326 K +LK+N + EIE K++E Sbjct: 320 KEKTKKFLKENDDLRLEIEGKIKE 343 >UniRef50_A3ZNU6 Protein recA n=4 Tax=Bacteria RepID=A3ZNU6_9PLAN Length = 392 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 183/314 (58%), Positives = 245/314 (78%), Gaps = 1/314 (0%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 L L QIEK FG+G+IM LG + ++ +E I TGS+SLD+ALG GLP GR++EI+GPES Sbjct: 48 LKTTLQQIEKSFGEGAIMPLGSNHAV-IEGIPTGSISLDLALGGKGLPRGRVIEIFGPES 106 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 130 SGKTTL L VIA AQ G AF+DAEHALDP +A+KLGV+++ LL SQP +GE+ L+I Sbjct: 107 SGKTTLALHVIAQAQAMGGIAAFVDAEHALDPSWAKKLGVELETLLVSQPSSGEEGLQIT 166 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + L +S AVDVIVVDSVAAL PKAE+ GEIG SH+GL AR+MSQAMRKL G + +S T++ Sbjct: 167 EMLVKSNAVDVIVVDSVAALVPKAELNGEIGASHVGLQARLMSQAMRKLTGVISKSKTIV 226 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 IFINQIR K+GVMFG+PETT GG ALKFY S R+D+RRIG +K+GE+VVG R K+VKN Sbjct: 227 IFINQIREKVGVMFGSPETTPGGRALKFYCSCRVDVRRIGQLKDGEDVVGQRVRCKIVKN 286 Query: 251 KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWL 310 K+A PF+ AEF +++ GI++ G+++DL ++ K++ ++GAW+ Y ++GQGK A A+L Sbjct: 287 KVAPPFRIAEFDMMHSNGISYEGDILDLAIEAKIVARSGAWFRYGDIQLGQGKEKARAFL 346 Query: 311 KDNPETAKEIEKKV 324 +NP +E+++KV Sbjct: 347 MENPAMTEELKQKV 360 >UniRef50_C2F9G8 Protein recA n=1 Tax=Lactobacillus paracasei subsp. paracasei ATCC 25302 RepID=C2F9G8_LACPA Length = 423 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/341 (53%), Positives = 255/341 (74%), Gaps = 4/341 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++ L AL +I+K FG+G++M++G+ + V+ +STG LSLD+ALG GGLP GRIVE+ Sbjct: 44 DRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEV 103 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPES+GKTT+ LQ IA Q+ G A+IDAE+A+DP YA +LGV+ID+LL SQP++GEQ Sbjct: 104 YGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQ 163 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 LEI + L S AVD++V+DSVAAL PKAEIEG IGDSH+GL AR+MSQA+RK+AG++ Sbjct: 164 GLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINN 223 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245 +NTL+IFINQ+R K+GVMFGNPE T GG ALKFYASVR++++R VK+G++VVG +++ Sbjct: 224 TNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFASKL 283 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKE----KLIEKAGAWYSYKGEKIGQ 301 KV KNK+A PFK E + +G GI ++++L + +I K+G+WY+Y E++GQ Sbjct: 284 KVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQ 343 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDD 342 G NA+ +L ++PE +KEIE+K+RE + D DD Sbjct: 344 GLVNASHYLDEHPEISKEIEEKIREQVAPKKPEEADEKQDD 384 >UniRef50_B5RLK6 Protein recA n=43 Tax=cellular organisms RepID=RECA_BORDL Length = 363 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/342 (54%), Positives = 259/342 (75%), Gaps = 4/342 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVE 64 NK+KA+ A QIEK FGKGS++++GE +E+I +GS+ LD A+G GG P GR+VE Sbjct: 17 NKEKAIELARVQIEKDFGKGSLIKMGESPVGKYLESIPSGSILLDEAIGIGGYPRGRVVE 76 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 I+GPESSGKTTLTLQ IA Q+ G AFIDAEHALDP+YAR LGV+I+ L SQPDTGE Sbjct: 77 IFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGE 136 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QAL+I + L RSG VD+IVVDSVAALTP+AEI+GE+GD+ +GL AR+MS+A+RK+ L Sbjct: 137 QALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKITAILS 196 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV--KEGENVVGSE 242 +SNT ++FINQIRMKIG++FG+PETTTGGNALKFY+S+RL++R++ V +NV+G++ Sbjct: 197 KSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDNVIGNK 256 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 RVKVVKNK+A PF++AE + +G+GI+ ++D +K L++K+G+WY+ + +GQG Sbjct: 257 IRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDDNLGQG 316 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSE 344 + N +L A E+E K+R+++ +P S +VD S+ Sbjct: 317 RENVIEYLFKEKALANELENKLRKIIFESP-SQDSLTVDISK 357 >UniRef50_Q39199 DNA repair protein recA homolog 1, chloroplastic n=148 Tax=cellular organisms RepID=RECAC_ARATH Length = 439 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/335 (55%), Positives = 243/335 (72%), Gaps = 5/335 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++QKAL AA+ I FGKGS+ RLG VET S+G L+LD+ALG GGLP GR+VEI Sbjct: 82 DRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALG-GGLPKGRVVEI 140 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE Sbjct: 141 YGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEM 200 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 ALE D + RSGAVD+I VDSV+ALTP+AEIEGEIG MGL AR+MSQA+RK++GN + Sbjct: 201 ALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASK 260 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSET 243 + LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K +G+ +G Sbjct: 261 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRA 320 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 RV+V K+K++ P+KQAEF+I++GEG++ G ++D +++ K G+WYSY+ +++GQG+ Sbjct: 321 RVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGR 380 Query: 304 ANATAWLKDNPETAKEIEKKVRELLLSN--PNSTP 336 A L++NP EIEKKVR L+L STP Sbjct: 381 EKALQHLRENPALQDEIEKKVRLLMLDGEVHRSTP 415 >UniRef50_C1E9Q3 RecA DNA recombinase n=3 Tax=Viridiplantae RepID=C1E9Q3_9CHLO Length = 515 Score = 363 bits (933), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 180/330 (54%), Positives = 241/330 (73%), Gaps = 3/330 (0%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 +A+ + K+KAL LG+I+ FGKGSIM+LGE V T +G+++LDIALG GG+P G Sbjct: 124 IAVRDAKKKALDRVLGEIDANFGKGSIMKLGEASQAKVATFPSGAMTLDIALG-GGMPRG 182 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 RIVE+YGPESSGKTTL L +A Q+ G T A IDAEHA DP Y+++LG+D+D+++ QP Sbjct: 183 RIVEVYGPESSGKTTLALHAMAEMQKLGGTVALIDAEHAFDPEYSQRLGLDVDDVVVCQP 242 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 +TGE ALE+ D L RS AVD+IVVDSVAAL P++EIEGEIG +G AR+MSQA+RK+ Sbjct: 243 ETGEMALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKIN 302 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV--KEGENV 238 N ++ +IF+NQ+R K+GV++GNPE TTGGNALKFYASVRLDIRR + K G + Sbjct: 303 VNAAKAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIRGKAGADD 362 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 298 G +VKV KNKIA P+K AEF +L+G GI+ G ++D + +I + GAWYSY E+ Sbjct: 363 EGVRVKVKVAKNKIAPPYKTAEFDMLFGRGISRDGCMLDAADELGVITRRGAWYSYGEER 422 Query: 299 IGQGKANATAWLKDNPETAKEIEKKVRELL 328 +GQG+ A +L NPE K++E+ VR ++ Sbjct: 423 LGQGREKAAEFLDANPEIKKQVEEDVRRVV 452 >UniRef50_B5YLR6 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B5YLR6_THAPS Length = 428 Score = 353 bits (905), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 190/349 (54%), Positives = 247/349 (70%), Gaps = 6/349 (1%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 K AL L +IE+ +G+GSI++LG+ M V+ I +GSL+LD+ALG GG P GR++EIY Sbjct: 69 KLSALEGVLSRIERNYGRGSIVKLGDADRMVVDCIGSGSLTLDVALG-GGYPKGRVIEIY 127 Query: 67 GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 126 GPESSGKTTL L +A AQ+ G AF+DAEHALDP YA LGVDID+LL SQPD+GE A Sbjct: 128 GPESSGKTTLALHALAEAQQSGGIAAFVDAEHALDPAYAAALGVDIDSLLVSQPDSGEMA 187 Query: 127 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 L+I D L RS AVDVIVVDSVAAL P+AE+EG++ D +GL AR+MS+A+RK+ +L S Sbjct: 188 LDIVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDMQVGLQARLMSKALRKITSSLSLS 247 Query: 187 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 246 +IF+NQ+R K+GV++G+PE T+GGNALKFYASVRLD RR + + +G +VK Sbjct: 248 QCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRREVLPDN---MGIRAKVK 304 Query: 247 VVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANA 306 VVKNK+AAPFK E IL+GEGI+ G L+D + ++++ G+WYSY+ QG+ NA Sbjct: 305 VVKNKVAAPFKVIELDILFGEGIDQMGCLLDAALDLDVVQRKGSWYSYQDSNFAQGRYNA 364 Query: 307 TAWLKDNPETAKEIEKKVRELLLSN--PNSTPDFSVDDSEGVAETNEDF 353 + +LK N E AK +EK+VRE LLS P D E E EDF Sbjct: 365 SVYLKGNAEVAKRMEKEVREALLSAKLPKGALGEGGGDVEDYVEMEEDF 413 >UniRef50_B7FQ63 Chloroplast-targeted nuclear-encoded recombinase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQ63_PHATR Length = 431 Score = 350 bits (898), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 180/323 (55%), Positives = 239/323 (73%), Gaps = 4/323 (1%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 +D K+ AL L QIE+ +G+GSI++LG+ +M V+TI +GSL+LD ALG GG P GR+ Sbjct: 75 MDPAKRAALDGVLNQIERNYGRGSIVKLGDADNMKVDTIGSGSLTLDAALG-GGFPKGRV 133 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 VEIYGPESSGKTTL L IA +Q+ G T AF+DAEHALDP YA KLGVDIDNLL SQPD+ Sbjct: 134 VEIYGPESSGKTTLALHAIAESQKVGGTAAFVDAEHALDPAYAAKLGVDIDNLLVSQPDS 193 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 GE AL++ D L RS AVDVIVVDSVAAL P+AE+EG++ D+ +GL AR+MS+AMRK+ G+ Sbjct: 194 GEMALDVVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDAQIGLQARLMSKAMRKITGS 253 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 L S +IF+NQ+R K+GV++G+PE T+GGNALKFYASVRLD RR + E G Sbjct: 254 LALSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRKEILPENS---GIR 310 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 +VKVVKNK+AAPFK +L+G GI+ G ++D + +IE+ G+W+SYKG+ + QG Sbjct: 311 VKVKVVKNKVAAPFKIVNLDLLFGSGIDQIGCMLDAAMDLNIIERRGSWFSYKGQNMAQG 370 Query: 303 KANATAWLKDNPETAKEIEKKVR 325 + N +K + + ++E +VR Sbjct: 371 RINVVEMIKSDTKLMAQLETEVR 393 >UniRef50_A8I670 Chloroplast RecA recombination protein n=3 Tax=Chlamydomonas reinhardtii RepID=A8I670_CHLRE Length = 415 Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 164/330 (49%), Positives = 233/330 (70%), Gaps = 1/330 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + K K + +I ++FG GSIMRL + + ++ET +GSL+LD ALG GG P GRI+E Sbjct: 60 DTKAKLFNETVDRITRRFGDGSIMRLSDSVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 +YGPE+SGKTTL + A QR G T A+ID EHA D YA +LG++++N +QP TGE Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +ALE+ D L RS D++V+DSVAAL P+AE+EG+IG +G AR++SQA+RKL+ + Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 +S T L FINQ+R KIGVMFGNPETT+GGNALK+Y+SVR+DIR+ + E + + R Sbjct: 239 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 298 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 KVVKNK+A+P K+A F+I YG GI+F G L+D + K++ + GA+Y Y +++GQG+ Sbjct: 299 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 358 Query: 305 NATAWLKDNPETAKEIEKKVRELLLSNPNS 334 A L+++ E IE VR++L +NP++ Sbjct: 359 KVLAALREDAERTAAIEAAVRDVLRANPDA 388 >UniRef50_C0R0F2 Protein recA n=3 Tax=Bacteria RepID=C0R0F2_BRAHW Length = 435 Score = 347 bits (890), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 175/325 (53%), Positives = 240/325 (73%), Gaps = 3/325 (0%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 K +A+ A QI K++G GS MRLG +++++V+ ISTG+L+LD ALG GG+P GRI+EIY Sbjct: 24 KSEAIEAITDQINKKYGPGSFMRLGSNKTVNVDVISTGALTLDHALGVGGVPRGRIIEIY 83 Query: 67 GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 126 G E+SGKTTLTL +IA AQ+ G AFIDAEHALDP+YA LGVDIDNL SQP++GE+A Sbjct: 84 GHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGEEA 143 Query: 127 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 LEI + + S A D++VVDSVAAL KAE+ G+IGD+H+ L AR+MS A+RKL + + Sbjct: 144 LEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIISNT 203 Query: 187 NTLLIFINQIRMKI---GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 NT +IFINQ+R I G G ETTTGG ALKFY+SVRLDIRR +K+G++ +G + Sbjct: 204 NTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDDTIGHKV 263 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 ++KVVKNK+++PFK +I++G+GI+ G L+DL ++ K+I ++GAW+ Y GE+I QGK Sbjct: 264 KIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQGK 323 Query: 304 ANATAWLKDNPETAKEIEKKVRELL 328 L +P+ E+E ++RE L Sbjct: 324 EKVRELLASDPKMRMELEIQIRETL 348 >UniRef50_Q9ZUP2 DNA repair protein recA homolog 3, mitochondrial n=79 Tax=cellular organisms RepID=RECA3_ARATH Length = 430 Score = 344 bits (883), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 185/329 (56%), Positives = 239/329 (72%), Gaps = 5/329 (1%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVEI 65 K+ AL AL QI FGKGSIM LG S +V STGS +LD+ALG GGLP GR+VEI Sbjct: 58 KEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEI 117 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPE+SGKTTL L VIA AQ++G TC F+DAEHALD A+ +GV+ +NLL SQPD GEQ Sbjct: 118 YGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQ 177 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 AL + D L RSG+VDVIVVDSVAAL PK E+EGE+GD+HM + AR+MSQA+RKL+ +L Sbjct: 178 ALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSL 237 Query: 186 SNTLLIFINQIRMKIGVM--FGNP-ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 S TLLIFINQ+R K+ FG P E T GGNALKFYAS+RL+I+RIG +K+GE GS+ Sbjct: 238 SQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGSQ 297 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 VK+VKNK+A PF+ A+F++ +G+GI E++DL +K K I K G +Y+ G+ G Sbjct: 298 VSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY-HG 356 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSN 331 K +LK N +E+ KK+++ L+++ Sbjct: 357 KEALKRFLKQNESDQEELMKKLQDKLIAD 385 >UniRef50_C1TRT4 Protein recA n=2 Tax=Synergistaceae RepID=C1TRT4_9BACT Length = 386 Score = 340 bits (873), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 166/321 (51%), Positives = 230/321 (71%), Gaps = 2/321 (0%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++ L A+ I +FG GSIMRLG+D +VE I TG L LD+ALG GG P GRIVE+ Sbjct: 9 TREDILEVAIDDIRSKFGDGSIMRLGDDTLANVEVIPTGILPLDVALGIGGFPRGRIVEV 68 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 +GPE SGKTTL L +A AQ+ G AFIDAEHALDP A+ LGV++ +L +QPD+GEQ Sbjct: 69 FGPEGSGKTTLALHALAEAQKAGGVAAFIDAEHALDPRLAQSLGVNVADLYIAQPDSGEQ 128 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 AL I + L RSGAVD++VVDSVAALTP+AEI+G+IGD+ +GL AR+MS ++R+L + + Sbjct: 129 ALYILETLVRSGAVDIVVVDSVAALTPQAEIDGKIGDTQVGLQARLMSYSLRRLTSAISK 188 Query: 186 SNTLLIFINQIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 SN++++FINQ+R I G G ETTTGG ALKFY SVR++++R +V +G++ +G E Sbjct: 189 SNSIVVFINQLRATISTGYSRGPSETTTGGRALKFYTSVRVEVKRGKSVTKGDDTIGHEL 248 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 +KVVKNK A PF+ A ++YG+GI VD+ + +I++ G+W +YKGE +GQGK Sbjct: 249 WIKVVKNKQAPPFRTAHTTLVYGKGIPNNMSTVDMAIDAGVIKRKGSWLAYKGETLGQGK 308 Query: 304 ANATAWLKDNPETAKEIEKKV 324 N +L+++P+ +EI K V Sbjct: 309 DNVANYLEEHPDLNEEIVKAV 329 >UniRef50_A4PHN2 RecA n=1 Tax=Physcomitrella patens RepID=A4PHN2_PHYPA Length = 435 Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 173/352 (49%), Positives = 237/352 (67%), Gaps = 7/352 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 +KQ + AA+ QI K+ GK ++M LG + ++ + TGSL+LDIALG GGLP GR+VEI Sbjct: 76 SKQSLIQAAIDQIAKKHGKETVMWLGRESRDFIDVVPTGSLNLDIALGVGGLPKGRVVEI 135 Query: 66 YGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 +G E+SGKTT+ L VIA AQ+ GK C F+DAEHALD +A +GV+ +LL QPD E Sbjct: 136 FGQEASGKTTIALHVIAQAQKMGKGHCLFVDAEHALDMQFAEGIGVNTKDLLFVQPDYAE 195 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QAL+ D RS VDVIVVDSVAAL PKAE+EG++GDS M L AR+MS+A+R+L +L Sbjct: 196 QALDTVDHFVRSTGVDVIVVDSVAALVPKAELEGDMGDSQMALQARLMSKALRRLTHSLN 255 Query: 185 QSNTLLIFINQIRMKIGVMFG---NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 SN LLIFINQ R K+ G E T GGNALKFYASVRL +R+ ++ G+ GS Sbjct: 256 SSNCLLIFINQTRAKLNTYGGGGPTAEVTAGGNALKFYASVRLQVRKKEQLRRGDVPFGS 315 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 VKVVKNK++ PF+ AEF I YG+GI+ GE++DLGVK L+ ++G+WYSY+G+ Sbjct: 316 SVIVKVVKNKVSPPFRTAEFDIEYGKGISRDGEVLDLGVKHGLLGQSGSWYSYEGKNFAN 375 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF 353 G+ A +L+++ + + ++E +L P ++ D D +G + + F Sbjct: 376 GREGAKKYLQEHTDLTDALVVAIKEKILGQPRASGDL---DDDGFIQEEDAF 424 >UniRef50_Q8EVC7 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCPE Length = 329 Score = 303 bits (776), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 148/318 (46%), Positives = 213/318 (66%), Gaps = 3/318 (0%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 +QKAL A+ +IEK+FGK + + S D + I +GS+ LD A+G GG P G+I+EIY Sbjct: 6 EQKALELAIKEIEKKFGKET---FSQSESFDNQVIKSGSILLDNAIGVGGYPKGKIIEIY 62 Query: 67 GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA 126 G ESSGKTT+ LQ + +EG + A+IDAE ++D Y LG+D LL + P+ GEQA Sbjct: 63 GNESSGKTTIALQCVKECIKEGGSVAYIDAECSIDSKYLSHLGIDPTKLLVATPEYGEQA 122 Query: 127 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 I DAL ++ VD+IVVDSVAAL PK +IE + D MG ARMMS+ ++ L +L + Sbjct: 123 FSIIDALIKTNMVDLIVVDSVAALVPKNDIESSMEDQSMGTHARMMSKGLKILQTSLSKH 182 Query: 187 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 246 T +IFINQ+R KIGVMFGN E TTGG ALKF++++RLD+RR +K G +V+G +++ Sbjct: 183 KTTVIFINQVREKIGVMFGNNEITTGGRALKFFSTLRLDVRRSELIKSGTDVIGIRSKIT 242 Query: 247 VVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANA 306 V KNK+A PFK I + +G + E++D ++ ++I+K+G+W+ Y K+ QG+ N Sbjct: 243 VTKNKVAPPFKNCFVDIFFNKGFDPTKEIIDFAIEYEIIKKSGSWFYYNETKLAQGRNNL 302 Query: 307 TAWLKDNPETAKEIEKKV 324 ++LK+N E EI+K V Sbjct: 303 DSYLKENNEIYDEIKKLV 320 >UniRef50_Q6ASS3 DNA repair protein recA, putative n=2 Tax=cellular organisms RepID=Q6ASS3_ORYSJ Length = 395 Score = 290 bits (742), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 151/323 (46%), Positives = 204/323 (63%), Gaps = 44/323 (13%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 QKAL AA+ I FGKGS+ RLG VET +G L+LD ALG GGLP GR+VE+YG Sbjct: 89 QKALDAAMNDINSSFGKGSVTRLGSAGGAFVETFPSGCLTLDFALG-GGLPKGRVVEVYG 147 Query: 68 PESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 127 PESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVDI+NL+ Sbjct: 148 PESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLI----------- 196 Query: 128 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 187 GEIG MGL AR+MSQA+RK++GN ++ Sbjct: 197 ------------------------------GEIGMQQMGLQARLMSQALRKMSGNASKAG 226 Query: 188 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSETRV 245 L+F+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR IG +K +G+ VG + RV Sbjct: 227 CTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDEDVGVKVRV 286 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN 305 +V K+K++ P+KQAEF+I++GEG++ G ++D +++ K G+WYSYK ++GQG+ Sbjct: 287 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEMRLGQGREK 346 Query: 306 ATAWLKDNPETAKEIEKKVRELL 328 A +L+++P EIEK VR ++ Sbjct: 347 ALQYLRESPTICDEIEKAVRAMI 369 >UniRef50_P47581 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCGE Length = 340 Score = 277 bits (708), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 141/302 (46%), Positives = 205/302 (67%), Gaps = 2/302 (0%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 93 ++ ++ETISTGSL+LD ALG+GGLP+GRIVE+YG ESSGKTT+ L +A+ Q+ GKT + Sbjct: 34 KNSEIETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASFQKAGKTACY 93 Query: 94 IDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 153 IDAE ALD YA+ +G+D++ LL + P GE A + ++L ++ + +IV+DSVAAL PK Sbjct: 94 IDAEGALDLAYAKSIGIDLNKLLIAHPRHGENAFALIESLIKTNKISLIVIDSVAALIPK 153 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 213 E+EG I + +GL ARMMS+ +R++ L S T ++FINQ+R K GVMFGN E TTGG Sbjct: 154 QELEGTIEEQTIGLHARMMSKGLRRIQSILPDSKTCVLFINQLREKPGVMFGNNEVTTGG 213 Query: 214 NALKFYASVRLDIRRIGAVKEG-ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 272 AL+FY+S+R++ +R+ +K+ N VG +T+V V KNKIA PF A +I++ G Sbjct: 214 KALRFYSSLRMEAKRVELLKDKFNNYVGIKTKVMVSKNKIAKPFGVAILEIMFNRGFVHE 273 Query: 273 GELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNP 332 E++DL +K ++ +AG YS+ E I GK L + P ++I K++ L+N Sbjct: 274 HEVIDLALKFNVVVRAGNSYSFNNESIAVGKEKLLNVLSEKPALFEQI-KELTVQQLANK 332 Query: 333 NS 334 NS Sbjct: 333 NS 334 >UniRef50_P35901 Mle recA intein n=1019 Tax=root RepID=RECA_MYCLE Length = 711 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 134/205 (65%), Positives = 164/205 (80%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 MA +++KAL A+ QIEK +GKGS+MRLG++ + I TGS++LD+ALG GGLP G Sbjct: 1 MAQVPDREKALELAMAQIEKNYGKGSVMRLGDEMCQPISVIPTGSIALDVALGIGGLPRG 60 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 RIVEIYGPESSGKTT+ L +A AQ G AFIDAEHAL+P YA+KLGVD D+LL SQP Sbjct: 61 RIVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQP 120 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 DTGEQALEI D L RSGA+D++V+DSVAAL P+AE+EGE+GDS++GL AR+MSQA+RK+ Sbjct: 121 DTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSYVGLQARLMSQALRKMT 180 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFG 205 G L S T IFINQ+R KIGVMFG Sbjct: 181 GALSNSGTTAIFINQLREKIGVMFG 205 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 128/193 (66%), Gaps = 18/193 (9%) Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 G+V V+ L P + D H+ L+ R M++ ++ GN F++ Sbjct: 518 GSVTPQFVEPTQQLVP-----ARVLDVHVKLSTRSMNRFDIEVEGNHN------YFVD-- 564 Query: 197 RMKIGVMFGN-PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAP 255 GVM N PETTTGG ALKFYASVR+D+RRI +K+G + VG+ TRVK+VKNK++ P Sbjct: 565 ----GVMVHNSPETTTGGKALKFYASVRMDVRRIETLKDGVDAVGNRTRVKIVKNKVSPP 620 Query: 256 FKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPE 315 FKQAEF ILYG+GI+ G L+D+GV++ + K+G+W++Y+GE++GQGK NA +L +N + Sbjct: 621 FKQAEFDILYGKGISREGSLIDMGVEQGFVRKSGSWFTYEGEQLGQGKENARNFLLENAD 680 Query: 316 TAKEIEKKVRELL 328 A EIEKK++E L Sbjct: 681 VANEIEKKIKEKL 693 >UniRef50_B1AI69 Protein recA n=15 Tax=Ureaplasma RepID=RECA_UREP2 Length = 334 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/314 (40%), Positives = 198/314 (63%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 74 + +E +F K S E + + ISTGS+ +D G G+P+G+I EIYG ESSGKT Sbjct: 13 IATLETKFAKSSYFIADEIKDEKINAISTGSIHIDQITGINGIPVGKITEIYGNESSGKT 72 Query: 75 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 134 T+ LQ IA Q+ G T +D E + D YA+ L VD+ L+ +QP TGEQA ++ + L Sbjct: 73 TIALQTIAECQKTGGTVVLLDLEGSFDINYAKSLKVDLTKLIITQPQTGEQAFDMIETLI 132 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 ++ ++D+IV+DSVAA+ P++E + + ++ MG AR+MS+ +RK+ + +S T +IFIN Sbjct: 133 KTNSIDLIVIDSVAAMLPESEYQANMNEALMGAHARLMSKGLRKIQPLINKSKTAIIFIN 192 Query: 195 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 Q+R KI FGNPE TTGG ALKFYAS+R++ ++ +KEG N +G +T+V VKNK+A Sbjct: 193 QLREKINTFFGNPEMTTGGKALKFYASLRIETKKADLIKEGINKIGIKTKVTTVKNKLAP 252 Query: 255 PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP 314 P + I +G G ++ E++D ++ +++K G+W+ + KIGQG+ L N Sbjct: 253 PLQTCFIDIFFGSGFDYNNEIIDFAIQYGVLKKNGSWFYFNDNKIGQGREQLKNTLSKNN 312 Query: 315 ETAKEIEKKVRELL 328 E +I +K E + Sbjct: 313 ELFIQISEKTLEFV 326 >UniRef50_Q59486 Protein recA, plasmid n=3 Tax=Lactococcus lactis RepID=RECA2_LACLA Length = 341 Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 135/324 (41%), Positives = 210/324 (64%), Gaps = 3/324 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 E K+ A+ A IEK+FG +I+ S V+ + +G LSLD A+G GG P GR++E Sbjct: 18 EEKKLAILKATQSIEKKFGSNTILNEEGKASQHVQALPSGILSLDCAIGIGGYPKGRLIE 77 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 ++G ESSGKTT+ LQ +A Q+ G A+IDAE++LD YA LGV D+L+ +QPDTGE Sbjct: 78 LFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSDSLIFAQPDTGE 137 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +A + + R+GA D+IVVDSVAALTP +EI+G G A+MMS+ + +L G + Sbjct: 138 EAFYMINEFVRTGAFDLIVVDSVAALTPASEIDGV---KMPGQQAKMMSEQLSQLVGKVN 194 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 Q+ T++IFINQIR + +F N ETT GG+ALKFY+SVR++++ +K+G + +G +T Sbjct: 195 QTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTT 254 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 + VKNK+++P+K+ ++G+G + ++V ++ +++K G WYS+ G+K+G+G Sbjct: 255 LHTVKNKVSSPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNGQKLGRGIF 314 Query: 305 NATAWLKDNPETAKEIEKKVRELL 328 +L +P ++ RE L Sbjct: 315 GVKEYLSHHPSVFNALDNLTREAL 338 >UniRef50_D1IJ27 Whole genome shotgun sequence of line PN40024, scaffold_252.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1IJ27_VITVI Length = 398 Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 142/327 (43%), Positives = 207/327 (63%), Gaps = 5/327 (1%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 K AL A+ ++ FG+ S++ L S ISTGSL LD+ALG GGLP GRIVEI Sbjct: 69 KDTALRLAISRLAGDFGRESMLSLQRFFVSRHAPVISTGSLKLDLALGIGGLPKGRIVEI 128 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YG E+SGKTTL L +I AQ+ G CA++D E+A++P +A +GV++DNLL S PD+ E Sbjct: 129 YGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDNLLISPPDSAEN 188 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 L + + L +SG++DVIVVDSVAAL P+ E++ IG ++ + +++M+QA+RK+ +L + Sbjct: 189 LLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQALRKIHYSLCR 248 Query: 186 SNTLLIFINQIR--MKIGVMFGN-PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 S TL+IF+NQ+R +K FG E T GGNAL+FYA+VRL + R G ++ + V G Sbjct: 249 SETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGLLRTEDKVTGLG 308 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 V+VVKNK+A K+A+ I +G GI F E+++L + +I K G+ Y +GE Sbjct: 309 VCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSKYIIEGEAF-NN 367 Query: 303 KANATAWLKDNPETAKEIEKKVRELLL 329 K A ++ N + I +R L Sbjct: 368 KQEAEQYMAQNSGVLERIVSFLRSHLF 394 >UniRef50_C7T573 Protein recA n=1 Tax=Pseudomonas putida RepID=C7T573_PSEPU Length = 247 Score = 251 bits (640), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 122/163 (74%), Positives = 139/163 (85%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 ++E + KAL AALGQIEKQFGKG++MR+GE + ISTGS+ LDIALG GGLP GRI Sbjct: 1 MNEQRNKALQAALGQIEKQFGKGAVMRMGEHERQAIPAISTGSMGLDIALGIGGLPKGRI 60 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 VEIYGPESSGKTTLTL VIA AQR+G TCAF+DAEHALDP YA KLGV++D+LL SQPDT Sbjct: 61 VEIYGPESSGKTTLTLSVIAEAQRQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDT 120 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 165 GEQALEI D L RS AVDVI+VDSVAAL PKAEIEGE+GD+H+ Sbjct: 121 GEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHV 163 >UniRef50_A0MN30 RecA/RadA recombinase n=1 Tax=Thermus phage phiYS40 RepID=A0MN30_9CAUD Length = 339 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 131/312 (41%), Positives = 198/312 (63%), Gaps = 12/312 (3%) Query: 20 KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 79 K+F K I E + E +STG L++D+ALG GG+PMG+I+E+YG ESSGKTT +L Sbjct: 15 KKFSKEEIYTGQELKQTKEEIVSTGILTVDLALGIGGIPMGKIIEVYGQESSGKTTFSLI 74 Query: 80 VIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 139 I+ Q+ K CAFIDAE++ DPI+A LGV++D LL + ++ E++LE + L G V Sbjct: 75 TISQMQKANKICAFIDAENSFDPIWAETLGVNLDELLLIEANSLEESLEKLEFLINQG-V 133 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 +V DS+ A ++ + GDS +G+ AR++S A+ KL ++Q+ ++FINQIR K Sbjct: 134 KYVVYDSIVAPPTVSQNNADYGDSLVGVRARILSMALSKLMPIIRQNKATIMFINQIREK 193 Query: 200 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQA 259 IGV +GNPETT GG ALKF++S+RL++R+ +K+ + +G E VKV KNK A P ++A Sbjct: 194 IGV-YGNPETTPGGRALKFFSSLRLNMRK-KPIKDEDGEIGDEVHVKVEKNKFAPPMRKA 251 Query: 260 EFQILY--GEGINFYGELVDLGVKEKLIEKAGAWYSYK---GEKIGQGKANATAWLKDNP 314 +F + Y I++ L LG L++K+GAWY + EK G +K+N Sbjct: 252 KFLLFYDGSYTIDYPEILSQLG----LVKKSGAWYKEQITGEEKTFHGAIQLIEEIKNNK 307 Query: 315 ETAKEIEKKVRE 326 A+ +++K+RE Sbjct: 308 PFAELVDQKIRE 319 >UniRef50_A4AAG4 RecA bacterial DNA recombination protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4AAG4_9GAMM Length = 181 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 112/154 (72%), Positives = 130/154 (84%) Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 MRKL +KQ+N L+IFINQIRMKIGVMFG+PETTTGGNALKFY+SVRLDIRRIGAVKEG Sbjct: 1 MRKLTATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEG 60 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYK 295 + VVG+ETRVKVVKNK+A PFKQAEFQI+YG GI E++D GVK LI+K+GAWY+YK Sbjct: 61 DEVVGNETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLNLIDKSGAWYAYK 120 Query: 296 GEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 329 G+KIGQGKANA +L+DNP EIE +R LL Sbjct: 121 GDKIGQGKANAAKFLEDNPALGSEIEGLIRSQLL 154 >UniRef50_Q05FN0 Protein recA n=1 Tax=Candidatus Carsonella ruddii PV RepID=Q05FN0_CARRP Length = 296 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 121/292 (41%), Positives = 186/292 (63%), Gaps = 4/292 (1%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 96 +VE ISTGSL++D LG GGLP GRI+EIYG ESSGKTT +I AQ+ G CA+ID Sbjct: 9 NVEFISTGSLNVDFILGIGGLPYGRIIEIYGQESSGKTTFAFSIIKEAQKVGDICAYIDV 68 Query: 97 EHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 156 EH +D Y LG+++ LL QP+ GE+ EI L S V +I++DS+AA+ P+ EI Sbjct: 69 EHCIDVNYIENLGINLKTLLIFQPENGEKVFEISQKLINSTYVKLIIIDSIAAIIPELEI 128 Query: 157 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 216 D+++G +R +S+ ++K+ L+++N LLI INQ+R+KI F N E +TGGNA+ Sbjct: 129 YN--NDNNIGSHSRFLSKNLKKIIPLLRKNNVLLILINQVRIKIS-NFYNKEISTGGNAV 185 Query: 217 KFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV 276 KFY+S+R++++RIG +K N++G E +V V+KNK++ P++ + ++Y GI E++ Sbjct: 186 KFYSSIRIELKRIGFLKSKNNIIGQEIKVNVLKNKLSKPYRDTKIYLIYSYGIYKILEII 245 Query: 277 DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 328 + G+K LI+ + + E K N L N + K+IE +R ++ Sbjct: 246 NFGLKFNLIKIIKKKFFLENEYFN-NKKNLIKKLMFNKKLLKKIESDIRSMI 296 >UniRef50_Q8RY99 DNA repair protein recA homolog 2, mitochondrial n=3 Tax=core eudicotyledons RepID=RECAM_ARATH Length = 389 Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 139/327 (42%), Positives = 201/327 (61%), Gaps = 5/327 (1%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGE-DRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 K AL AL Q+ F K S + L R V ISTGSL+LD+ALG GGLP GR+VE+ Sbjct: 62 KDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPKGRMVEV 121 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YG E+SGKTTL L +I AQ+ G CA++DAE+A+DP A +GV+ + LL S+P + E+ Sbjct: 122 YGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPSSAEK 181 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 L I D L +SG+VDVIVVDSVAAL P+ E++ +G+ + +R+M+QA+RK+ ++ Sbjct: 182 MLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHYSVGY 241 Query: 186 SNTLLIFINQIRMKIGVMFGNP---ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 S TL++F+NQ+R + P E T GGNAL F+A++RL + R G +K + G Sbjct: 242 SQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKISGLN 301 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 V+VVKNK+A K++E I +G G E+++L + +I + G Y +GE I +G Sbjct: 302 VCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEVI-EG 360 Query: 303 KANATAWLKDNPETAKEIEKKVRELLL 329 K A +L +N E + +R L Sbjct: 361 KDAAEKYLVENKEALDTVVAILRNQLF 387 >UniRef50_Q8L1K7 Glutamine synthetase 1 (Fragment) n=8 Tax=Rhizobiales RepID=Q8L1K7_9RHIZ Length = 461 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/159 (69%), Positives = 133/159 (83%), Gaps = 5/159 (3%) Query: 17 QIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 76 ++E +F G+ ++ +++ET+ TGSL LDIALG GGLP GRI+EIYGPESSGKTTL Sbjct: 308 RVEVRFPLGA-----NEQVVEIETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTTL 362 Query: 77 TLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 136 L +A AQ++G CAF+DAEHALDP+YARKLGVD++NLL SQPDTGEQALEICD L RS Sbjct: 363 ALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVRS 422 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 GA+DV+VVDSVAALTP+AEIEGE+GDS GL AR+MSQA Sbjct: 423 GAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 461 >UniRef50_Q3F0X4 RecA protein n=2 Tax=Bacillus thuringiensis RepID=Q3F0X4_BACTI Length = 362 Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 129/334 (38%), Positives = 195/334 (58%), Gaps = 17/334 (5%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 74 + I KQ G+ +I + ++ S+GSL++D+ALG GG+ GRI+E +G +GKT Sbjct: 7 MSTINKQLGEDTI-GYSVNTGPTIKLFSSGSLTMDLALG-GGVANGRIIEYFGNSMAGKT 64 Query: 75 TLTLQVIAAAQREGK-TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 133 TL IA QR+ + AFID EHA++ A++ GVD+D L+ P T E A++I D+L Sbjct: 65 TLMFLHIAEVQRKNEGYVAFIDMEHAMNKELAQQYGVDLDKLIYVNPKTAENAVDIADSL 124 Query: 134 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 193 RSG V +I VDSV+A+ P +E MGL AR MS M+KL G + + + FI Sbjct: 125 IRSGEVRLIAVDSVSAMVPTKIVESSAEQQTMGLLARFMSTTMQKLTGIAYEHDCTVGFI 184 Query: 194 NQIRMKIGVM--FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 NQIR KIG G P TT+GG AL FYAS R+ ++ +K+G +++G ++KVVKNK Sbjct: 185 NQIREKIGGFSPAGTPTTTSGGRALPFYASQRIQVKMGEYIKDGNDIIGHWVKIKVVKNK 244 Query: 252 IAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ---------- 301 IA PFK+A F ++YG G++ E+ + + ++K G W E+ G+ Sbjct: 245 IAIPFKEAAFPLIYGHGVDRIDEVAQVAILAGFVQKNGGWCRIIDEETGEIRQHKGIELK 304 Query: 302 --GKANATAWLKDNPETAKEIEKKVRELLLSNPN 333 G+A A+L ++ + A E+E K+R + + P+ Sbjct: 305 FNGQAKLVAFLHEHKDLAAELEAKIRGVEVELPD 338 >UniRef50_B9EWE7 Putative uncharacterized protein n=3 Tax=Poaceae RepID=B9EWE7_ORYSJ Length = 392 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/327 (41%), Positives = 199/327 (60%), Gaps = 13/327 (3%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGE-DRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 K+ L+ A+ Q+ F + S + L R+ ISTGSL LDIALG GGLP GR+VE+ Sbjct: 65 KESTLSVAVSQLASDFDRESNLCLERFSRTRRTPVISTGSLKLDIALGIGGLPKGRMVEL 124 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 +G E+SGKTTL L V+ AQ++G CA+IDAE+A +P A +GV+++ LL +QPD+ E Sbjct: 125 FGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPDSAEN 184 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 +L I + L G++DV+VVDSVAAL P+ E+EGEI + + +R+M++A+RK+ L + Sbjct: 185 SLSIVNTLV-GGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQSRLMTRALRKIQHTLSR 243 Query: 186 SNTLLIFINQIRMKI------GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV 239 S TL+IF+NQ+R K+ G+ E GGNAL FYA+VR+ R Sbjct: 244 SETLIIFVNQVRTKLSSNQTPGIF---KEVACGGNALGFYAAVRMRTSRRELRYNEAQAT 300 Query: 240 GSETRVKVVKNKIA-APFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 298 G V+++KNK+A A K+A I +G+GI + E+++L +I K + Y GE Sbjct: 301 GIGISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWINGEF 360 Query: 299 IGQGKANATAWLKDNPETAKEIEKKVR 325 + KA A +L++N A EI +R Sbjct: 361 L-PNKAEAEKFLRENAAVADEICGTMR 386 >UniRef50_A7KV38 RecA n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KV38_9CAUD Length = 457 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 115/349 (32%), Positives = 191/349 (54%), Gaps = 26/349 (7%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 E K+K + I K G ++ +D + + + T S +++ G GG+P GRI E Sbjct: 22 EEKRKIAMKLMDGINKTAGSTAV-GFAKDVAKKLTFLPTPSEEINVMTG-GGIPRGRITE 79 Query: 65 IYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIYARKL-GVDIDNLLCSQPD 121 I+G SSGKT+L L+ I Q A++++E + DP YAR + G+D+D L+ Sbjct: 80 IFGNNSSGKTSLCLETIGEDMEQDPDALWAWLESEESFDPDYARDVHGIDLDRLIYVDIS 139 Query: 122 T--GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179 E++++ + L RSG + VV+SVA L PK E+E ++ S + L ARMMS+ MRK Sbjct: 140 LKGAEESIDRLEVLMRSGILSGFVVNSVAGLVPKREVETDLAQSDIALQARMMSKLMRKW 199 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV 239 + + + IFINQ+R + FG+P TTGG AL FYAS+R + ++ +++ + + Sbjct: 200 TALIGKKDLYAIFINQLRTDVNSRFGDPNVTTGGRALAFYASLRFGMNKL-KLQDSDPIT 258 Query: 240 ---GSETRVKVVKNKIAA--PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSY 294 G + +V KN+ P+K+ E+ ++YGEG++ E+++ ++ K+G+W+ Y Sbjct: 259 DDDGLKISARVAKNRCVYDNPYKKCEYYVIYGEGVDKLTEIMENVEPAGIMRKSGSWFYY 318 Query: 295 K---GEKIGQGKANATAWLKDN--PETAKEI------EKKVRELLLSNP 332 + GE+I A A KD+ P+ AK + + K RE + NP Sbjct: 319 EKEDGEQIEA--AEALVRKKDDPVPQMAKNVPLKFPGKTKFREFMTDNP 365 >UniRef50_D1ZY30 Whole genome shotgun sequence assembly, contig_3649 n=1 Tax=Sordaria macrospora RepID=D1ZY30_SORMA Length = 209 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 78/138 (56%), Positives = 106/138 (76%), Gaps = 10/138 (7%) Query: 189 LLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVV 248 ++IFINQ+RMKIGVM+GNPETTTGGNALKFYAS+ K+ + ++G+ TRVKVV Sbjct: 1 MVIFINQLRMKIGVMYGNPETTTGGNALKFYASI----------KDRDEIIGNATRVKVV 50 Query: 249 KNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATA 308 KNK+A PFKQ EF I+YG+GI+ GE++DLGVK L+EK+GAW+SY +IGQG+ NA Sbjct: 51 KNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENAKT 110 Query: 309 WLKDNPETAKEIEKKVRE 326 +L ++PE ++E +R+ Sbjct: 111 FLTEHPELRDKLEASIRQ 128 >UniRef50_A0A7C2 RecA recombinase n=1 Tax=Microcystis aeruginosa phage Ma-LMM01 RepID=A0A7C2_9CAUD Length = 354 Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 156/274 (56%), Gaps = 12/274 (4%) Query: 30 LGEDRSMDVET-ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 LG S++ T I +G SLD LG GG P+G+IVEI G S GKTTL Q ++ Q +G Sbjct: 31 LGSTSSIEPTTFIPSGIFSLDYVLG-GGWPVGKIVEIAGETSVGKTTLMKQCVSLLQAKG 89 Query: 89 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 148 A++D E + + YAR +G+ +D + +PDTGE+ ++ L SG V ++V+DSVA Sbjct: 90 YMAAWLDHEKSFEVGYARMMGMQMDQIAMFRPDTGEEGMDSLITLLGSGLVKIVVIDSVA 149 Query: 149 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE 208 + E+E D+ + AR++S+ + ++ ++ ++ INQ R K+G +G P Sbjct: 150 NMISAVEVEKGSADATVAQLARLLSKKLPQVVNAASKTGATVVLINQYRTKVG-SYGAPV 208 Query: 209 TTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG-- 266 +TGG AL + A+V+L + R +K+ + G VK KN++A PF++AE +L Sbjct: 209 GSTGGKALAYNAAVQLRLGRGDPLKQRGVITGMTITVKNTKNRVAIPFREAELDLLLPYT 268 Query: 267 -------EGINFYGELVDLGVKEKLIEKAGAWYS 293 G++ G++V VK ++ ++GA+Y+ Sbjct: 269 GPNGDLLAGVDLVGDIVRQAVKTGIVSRSGAFYT 302 >UniRef50_Q02AB2 Protein recA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AB2_SOLUE Length = 248 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/230 (42%), Positives = 139/230 (60%), Gaps = 12/230 (5%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99 S+G +LD ALG GGLP G++VE YGP GKTTL +Q+ A AQ G TCA+IDA+ Sbjct: 27 CFSSGFQALDEALG-GGLPRGQMVEFYGPSGCGKTTLAIQIAAHAQAGGLTCAWIDADRT 85 Query: 100 LDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 159 D YA LG +D + +QPD+ E+ LE+ AL SGAVD+++VDS AAL PK E+E Sbjct: 86 FDAAYAAHLGAAVDRIPVAQPDSAEEGLEVTRALIDSGAVDLVIVDSAAALVPKLELEAG 145 Query: 160 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 219 IG GL +R++S +R L L ++ ++F+NQ+R + G+ ET+ GG LK + Sbjct: 146 IGYYSKGLHSRVLSSGLRNLRRALARTGACVVFLNQVRNRPS--GGSGETSAGGPPLKLF 203 Query: 220 ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 A+VRL + + G+ R++V+KNK+AA E + + G G Sbjct: 204 AAVRLAL---------TPLEGTRLRLRVLKNKVAAQTSGRELEWVRGSGF 244 >UniRef50_A5LPZ1 Recombinase A n=1 Tax=Streptococcus pneumoniae SP6-BS73 RepID=A5LPZ1_STRPN Length = 174 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 74/127 (58%), Positives = 93/127 (73%), Gaps = 4/127 (3%) Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVK----EGENVVGSETRVKVVKNKIAAPFKQ 258 MFGNPETT GG ALKFYASVRLD+R +K + E VG ET++KVVKNK+A PFK+ Sbjct: 1 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKE 60 Query: 259 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAK 318 A +I+YGEGI+ GEL+ + +I+KAGAWYSYK EKIGQG NA +L ++PE Sbjct: 61 AVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFD 120 Query: 319 EIEKKVR 325 EI+K+VR Sbjct: 121 EIDKQVR 127 >UniRef50_Q6Y3G2 RecA (Fragment) n=1 Tax=Geobacter hydrogenophilus RepID=Q6Y3G2_9DELT Length = 158 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 64/85 (75%), Positives = 75/85 (88%) Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + RSGAVDV+V+DSVAAL PKAEIEGE+GDSH+GL AR+MSQA+RKL G + +SN + Sbjct: 1 EMFVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCV 60 Query: 191 IFINQIRMKIGVMFGNPETTTGGNA 215 IFINQIRMKIGVMFG+PETTTGGNA Sbjct: 61 IFINQIRMKIGVMFGSPETTTGGNA 85 >UniRef50_A8L2Z2 RecA domain protein n=1 Tax=Frankia sp. EAN1pec RepID=A8L2Z2_FRASN Length = 274 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 61/131 (46%), Positives = 93/131 (70%), Gaps = 4/131 (3%) Query: 215 ALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 + +F VR D+RRI +K+G+ V + TRVKVV+NK+A PF+ AEF I+YG GI+ G Sbjct: 27 SCRFSQPVRHDVRRIETLKDGQEAVANRTRVKVVRNKMAPPFRMAEFDIVYGGGISREGS 86 Query: 275 LVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNP-- 332 L+D+GV+ +I K+GAWY+ G+++GQGK NA ++L+DNP+ A E EK+++E L +P Sbjct: 87 LIDMGVEHTIIRKSGAWYTDDGDQLGQGKENARSFLRDNPDLANETEKRIKEKLGLSPTL 146 Query: 333 --NSTPDFSVD 341 ++ P +VD Sbjct: 147 DADAPPPVAVD 157 >UniRef50_A4TT30 Recombinase n=19 Tax=Enterobacteriaceae RepID=A4TT30_YERPP Length = 358 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/280 (31%), Positives = 146/280 (52%), Gaps = 36/280 (12%) Query: 41 ISTGSLSLDIALGA---GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 I +G L+ A+ GG P GRIVE++GP S+GKT L + +AQ++ F+D E Sbjct: 29 IDSGFPPLNKAISGRYDGGFPCGRIVEVFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHE 88 Query: 98 HALDPIYARKLGVDID----NLLCSQPDTGEQALEIC---------DALARSGAVDVIVV 144 ++ D A G++ D + QPDT E ++E+ + L A IV Sbjct: 89 NSFDVGLAVANGLNADEDDGQWVYKQPDTFEDSVELIGTILKLVRDEELIPETAPICIVA 148 Query: 145 DSVAALTPKAEIE-------------GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 191 DS+A++ P ++ E ++ + AR S LA ++ N +I Sbjct: 149 DSLASMVPNSKAEKFDKMAEGTAKDKDQLNMNDNTALARATSANFPTLALWARKYNACII 208 Query: 192 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA--VKEGENVVGSETRVKVVK 249 F+NQ+R KIGVMFG+P T+ GG++ KFYASVR+ R+GA +K+G+ +G + + +K Sbjct: 209 FLNQVRTKIGVMFGDPTTSPGGDSPKFYASVRI---RLGASVMKDGKEKIGQDVGAECIK 265 Query: 250 NKIAAPFKQAEFQILYG--EGINFYGELVDLGVKEKLIEK 287 NK+A PF + ++ + G++ LV+ ++E + K Sbjct: 266 NKVAPPFGKCSWKFYFDPTRGLDVIESLVEYMLEEGYLPK 305 >UniRef50_B9H9J7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9H9J7_POPTR Length = 335 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/136 (50%), Positives = 90/136 (66%), Gaps = 3/136 (2%) Query: 5 ENKQK--ALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGR 61 E KQK AL AL Q+ +FG+ S++ L S ISTGSL LD+ALG GGLP GR Sbjct: 55 EAKQKDNALRLALTQLAGEFGRESMLSLQRFFSSRRASIISTGSLKLDLALGIGGLPKGR 114 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 121 +VEIYG E+SGKTT+ L +I AQ+ G CAF+D E+A+D A+ +GV+ +NLL S+PD Sbjct: 115 MVEIYGQEASGKTTIALHIIKEAQKLGGYCAFLDVENAMDHSLAKSMGVNTENLLISRPD 174 Query: 122 TGEQALEICDALARSG 137 E L + + L +SG Sbjct: 175 CAENLLSVVNTLTKSG 190 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 1/122 (0%) Query: 208 ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 267 E T GGNALKFY++VRL + R G +K G+ V G +VVKNK+A +AE I +G Sbjct: 211 EVTCGGNALKFYSAVRLRMIRTGLLKTGDKVTGLGVCAQVVKNKLAPAMTKAEIGIQFGR 270 Query: 268 GINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVREL 327 G F E+++L ++ LI+K G+ Y G ++ + A +L +N +I K+R Sbjct: 271 GFCFESEVLELACEQSLIKKEGSSYVI-GREVFSNEHAAEQYLIENEGVLDQIVAKLRGK 329 Query: 328 LL 329 LL Sbjct: 330 LL 331 >UniRef50_C7F8K4 Recombination repair protein n=1 Tax=Bacillus phage Bcp1 RepID=C7F8K4_9CAUD Length = 407 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/301 (31%), Positives = 150/301 (49%), Gaps = 32/301 (10%) Query: 55 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDN 114 GGLP GR++E+ G S GK+T T V+ A G C ID E D LG+D Sbjct: 56 GGLPFGRMIEVAGVPSGGKSTFTHHVMRVATALGCICVLIDVEGTSDNERLTALGIDTSK 115 Query: 115 LLCSQPD--------------TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 160 +L QPD T E+ L++ V V V DSV + + E+E + Sbjct: 116 VLVKQPDPDKGTALTVEEVGQTVEETLKLFGEKYPHVPV-VYVWDSVGSTPSQVELEKDF 174 Query: 161 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT----GGNAL 216 G+ ++G A+ ++Q + K+ + QS +L I INQ+R IG GNP T GG A Sbjct: 175 GEQNVGARAKAITQFVTKVTPMVSQSKSLFIGINQVRDDIG---GNPMFKTYKVPGGKAW 231 Query: 217 KFYASVRLDIRRIGAVKEGENV----VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 272 + A++R++I+ GA+ +G V +G VK K+K++ PF++A +L GI++ Sbjct: 232 EHAATLRIEIKNRGAINKGSGVNKERLGHTMGVKTQKSKVSRPFQEATGSLLADTGIDYE 291 Query: 273 GELVDLGVKEKLIEK-AGAWYSYK---GEKIGQGKANATAWLKDNPETAKEIEKKVRELL 328 LV +G + +I K + Y Y G Q +A+ WL+ PE A+ + +++ L Sbjct: 292 YNLVTMGDEAGIIGKPSNQSYEYVDQFGTVYKQNRASFIEWLR-TPE-AQPVRQEILNKL 349 Query: 329 L 329 + Sbjct: 350 I 350 >UniRef50_A8ASX5 Gp141 n=3 Tax=unclassified SPO1-like viruses RepID=A8ASX5_BPA51 Length = 414 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 152/319 (47%), Gaps = 37/319 (11%) Query: 48 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 107 LD LG GG+P GR+ EI G +SGK+TL + + A + +ID E DP + Sbjct: 45 LDYILG-GGIPFGRLTEIMGKNASGKSTLAVHLTKVALQLDCKVIWIDTEGTADPSRLSQ 103 Query: 108 LGVDIDNLLCSQPD-----------------TGEQALEICDALARSGAVDVIVVDSVAAL 150 LGVD++ + QP E+ I +A + S VI+ DS+ Sbjct: 104 LGVDVNKIFFVQPKKSKNAEVNKEDSITVEFVAERVEAILNAFSSSEQRIVIIWDSIGHT 163 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 EIE + G+ A+ M+Q +A + +S+ I INQ R ++G MFG + + Sbjct: 164 PSIKEIEQGVAGKQPGIKAKAMAQFATIIAPMVTKSHCAFIGINQARDEMGSMFGAVD-S 222 Query: 211 TGGNALKFYASVRLDIRRIGAVKEG--------ENV-VGSETRVKVVKNKIAAPFKQAEF 261 GGNAL +AS+RL++++ ++E +NV VG + RV K+K++ P + AE Sbjct: 223 PGGNALHHWASLRLEVKQASKIEEPMQNAFGTMDNVYVGHKLRVITKKSKVSTPRQSAEM 282 Query: 262 QILYGEGINFYGELVDLGVKEKL--IEKAGAWYSYKGEKIGQGKANATAWL-----KDNP 314 +L G+ + + V K+ + K + SY + + K W+ KD Sbjct: 283 FLLSASGLQYEENIYRSCVDSKMYGLIKGLQYKSYIADDGKEYKMYGKDWVPFLQSKDGE 342 Query: 315 ETAKEIEKKVRELLLSNPN 333 + KE+ +K+ +L+S P Sbjct: 343 KIRKELFQKM--MLISFPT 359 >UniRef50_C0AXS3 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AXS3_9ENTR Length = 93 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/91 (59%), Positives = 69/91 (75%), Gaps = 5/91 (5%) Query: 264 LYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKK 323 +YGEGIN +GEL+DLGVK KL+EKAGAWYSY GEKIGQGKANAT +LK++PE E+ K Sbjct: 1 MYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATTYLKEHPEMYNELNTK 60 Query: 324 VRELLLSNP---NSTPDFS--VDDSEGVAET 349 +RE+LL++ S DF+ DD+ + ET Sbjct: 61 LREMLLNHAGEFTSAADFANDSDDAADIEET 91 >UniRef50_Q4Z9W4 ORF021 n=4 Tax=unclassified SPO1-like viruses RepID=Q4Z9W4_9CAUD Length = 418 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/323 (30%), Positives = 147/323 (45%), Gaps = 42/323 (13%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I T D LG GG+P+GR+ E+YG SGK+T + + A + G +ID E Sbjct: 41 IPTMVPQYDYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLGVITIWIDIEGTA 99 Query: 101 DPIYARKLGVDIDNLLCSQP------DTGEQALE--------ICDALARS--GAVDVIVV 144 D +LGVD+ L Q +T E ++E D G V + Sbjct: 100 DNNRMEQLGVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFNEKIPGVPIVFIW 159 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR--MKIGV 202 DS+ A + EI+G I + MGL A + + + L +NT LI INQ R M G Sbjct: 160 DSLGATRTQKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIVINQARDDMNAG- 218 Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE------TRVKVVKNKIAAPF 256 M+G+P +TGG A + AS+R+ + + +K+ + G + R++ K+K++ P Sbjct: 219 MYGDPIKSTGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRIETKKSKLSRPG 278 Query: 257 KQAEFQILYG------------EGINFYGELVDLGVKEKLIEKAGAWYSY---KGEKIGQ 301 ++AE +L GI+ + V+ LI K GAW +Y GE+I Sbjct: 279 QKAEADLLSDYMVGKEDDPILLNGIDLEHTVYKEAVERGLITK-GAWRNYVTLNGEEIKL 337 Query: 302 GKANATAWLKDNPETAKEIEKKV 324 A LKDN E E+ +V Sbjct: 338 RDAEWVPVLKDNKELYLELFSRV 360 >UniRef50_B5LJG5 Gp193 n=9 Tax=unclassified Myoviridae RepID=B5LJG5_9CAUD Length = 371 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 102/342 (29%), Positives = 167/342 (48%), Gaps = 41/342 (11%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDVE-TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 73 L I K++G+G++MR E + V I +GS +LD A+G GGLP R +EI G E GK Sbjct: 8 LDSINKKYGEGTMMRASE---VPVHPAIHSGSYALDYAIGIGGLPQDRTIEIGGGEGCGK 64 Query: 74 TTLTL----QVIAAAQREGKTCAFIDAEHALDPIYARKL----GVDIDNLLCSQPDTGEQ 125 TTL L Q + EG++ +D EH L + R+L +D D +L +QPD EQ Sbjct: 65 TTLALLAMVQFLTDPANEGRSALILDMEHKLTMSWVRELIGDELMDSDRVLYAQPDHIEQ 124 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 A I L +G V ++ DS+ A ++ E + +G A+ + + + + Sbjct: 125 ATNIFVDLVSTGEVCYVLYDSIGGSAGMAVVQKEAEKAQVGGDAKAIGRLLNLANIYCSK 184 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR--------IGAVKEGEN 237 L +FINQ R + T GG K+ +R+ ++ I + E Sbjct: 185 YRCLGVFINQERDDMDGY--RRYMTPGGRKAKYMFILRIRLKASTKAEDKIIRKINGEER 242 Query: 238 VVGSETRVKVVKNKIAAPFKQAEFQIL------YGEGINFYGELVDLGVKEKLIEKAGAW 291 +G+ ++KN++AAPF+ A++ + +G GI+ E+V LG +I+ +G W Sbjct: 243 QIGTLINATIMKNQLAAPFRSAKWNMYNVWTEEFGFGIDTTEEVVRLGTATGVIQGSG-W 301 Query: 292 YS---YKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLS 330 Y+ + G K+ QG A +K++P K+R+ L+S Sbjct: 302 YTHPAFPGGKL-QGMKGIQAAVKEDP--------KLRDTLVS 334 >UniRef50_C4Z5Y6 Protein recA n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z5Y6_EUBE2 Length = 336 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 141/291 (48%), Gaps = 17/291 (5%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 74 + ++ K++ K I+R D +E I S ++ L GG+P+GRI+E+ G SGKT Sbjct: 8 IAEVNKKY-KTDIIRKASDLK-GIEFIPYTSPMMNY-LTRGGVPVGRIIELVGLPQSGKT 64 Query: 75 TLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT--GEQALEIC 130 T L +I+ Q++ K C ++DAE+ +D + LGVD ++ QP++ GE+ L++ Sbjct: 65 TTALDIISNFQKKYTDKYCVYLDAENTIDKEWGETLGVDWSKVILIQPESEYGEELLDML 124 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 RSG + + V+DS + PKA E + + G + +M K K+ Sbjct: 125 LDYIRSGKIGLAVLDSAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCKKVECTF 184 Query: 191 IFINQIRMKIGVMFGNPETTTGGNA--------LKFYASVRLDIRRIGAVKEGENVVGSE 242 + INQ+R IG + P G A L F LD + N G+ Sbjct: 185 LLINQLRENIGNPY-KPFKIPCGTAIAHACSQILWFTKGSLLDEKYKEVSSGYANPSGNL 243 Query: 243 TRVKVVKNKIAAPFKQAE-FQILYGEGINFYGELVDLGVKEKLIEKAGAWY 292 VKV KNK+ ++ + + + Y G++ + +DL + +I +AGAW+ Sbjct: 244 VSVKVEKNKVTKNDRRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWF 294 >UniRef50_Q94CQ8 P0660F12.22 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q94CQ8_ORYSJ Length = 239 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 110/233 (47%), Gaps = 44/233 (18%) Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 121 +VE++G E+SGKTTL L V+ AQ++G CA+IDAE+A +P A +GV+++ LL +QPD Sbjct: 1 MVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPD 60 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 + E +L I + L G +VV R + Sbjct: 61 SAENSLSIVNTLV--GGSIDVVVVDSVCF-------------------------FRNVRT 93 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 L + T IF E GGNAL FYA+VR+ R G Sbjct: 94 KLSSNQTPGIF--------------KEVACGGNALGFYAAVRMRTSRRELRYNEAQATGI 139 Query: 242 ETRVKVVKNKIA-APFKQAEFQILYGEGINFYGELVDLGVKEKLIEK--AGAW 291 V+++KNK+A A K+A I +G+GI + E+++L +I K +G W Sbjct: 140 GISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYW 192 >UniRef50_Q555F1 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q555F1_DICDI Length = 458 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 96/181 (53%), Gaps = 21/181 (11%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT------- 90 + TI++G SLD L GGLP+ I+EIYG S+GK+TL++ +++ + K+ Sbjct: 82 IPTITSGITSLDYQLQIGGLPLNHIIEIYGDSSTGKSTLSMFILSNLIKNNKSKQEQRLS 141 Query: 91 -------------CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 137 +ID+E++ + +A K+G+++ N QP+ E+A E+ ++ Sbjct: 142 SSSSSLSSSQEENVLYIDSENSFNSEWASKIGMNLSNCTVFQPNNSEEAFELIKKSLKNQ 201 Query: 138 AVDVIVVDSVAALTPKAEIEGEIGDSHM-GLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 VI++DS+++L +IE + ++H + ++ + +++ L SN IF NQ+ Sbjct: 202 IFKVIILDSLSSLMSIKDIESNLVENHYQNIGFDWITSNLNEISNLLIDSNCCFIFTNQM 261 Query: 197 R 197 R Sbjct: 262 R 262 >UniRef50_UPI0001BCAEAD recA protein n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEAD Length = 466 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 20/297 (6%) Query: 43 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHAL 100 TG L +D L G G IYG ES GK+TL LQ+ Q K ++D+E L Sbjct: 47 TGILGID--LNTNGFKKGTFNVIYGAESGGKSTLALQICEGFQLTDPDKQFLYVDSEGTL 104 Query: 101 DPIYARKL-GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 159 D + ++ + +N++ + E + + + G VDVI++DSV ++T +++ Sbjct: 105 DETFINRIPNLKKENMIFLKDGIMESIFDTIKEIVKEGLVDVIIIDSVDSMTTNSQLGKS 164 Query: 160 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 219 + D+ + +R++S+A+ L + + + I Q R+ + +GG A+ +Y Sbjct: 165 LEDNIVMDKSRILSRALSDLTDFISKYGITIFIIQQERINMSGYTVRQHGRSGGKAMLYY 224 Query: 220 ASVRLDIRRIGAVKEGENVVGSETR-----VKVV--KNKIAAPFKQAEFQILYGE----G 268 S + +I + E E SE + VK++ K+KI+ PFK+ I Sbjct: 225 PSTVYRLAKINSQNETEKDQISENKVVTQYVKIINEKSKISEPFKETFTWINLDRRKKIA 284 Query: 269 INFYGELVDLGVKEKLIEKAGAWYSY---KGE-KIGQGKANATAWLKDNPETAKEIE 321 + ELVD LI K G+WY GE K QG L +NP+ E++ Sbjct: 285 VKKIQELVDYATIYGLITKGGSWYEIVDSNGETKKVQGANGVNKLLSENPDFYTELK 341 >UniRef50_Q5ULR1 Recombinase A n=1 Tax=Lactobacillus phage LP65 RepID=Q5ULR1_9CAUD Length = 405 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 91/313 (29%), Positives = 146/313 (46%), Gaps = 43/313 (13%) Query: 47 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR 106 +LD L +G GR+ E++G SSGK+TL V+ A + + D E +D Sbjct: 40 ALDKNLVSGIPSSGRVTEVFGLPSSGKSTLMGLVMKNALKMNVIPIYFDVEETMDSERLE 99 Query: 107 KLGVDIDNLLCSQPDTGEQAL-------EICDALARSGA---------VDVIVVDSVAAL 150 LGVD ++ P+ + EI + + A + ++DSV Sbjct: 100 GLGVDPSKVITVTPEINKDNTVTPLYIEEITNYIVNMAAKIHSQSSELTSMFIIDSVGFT 159 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE-- 208 K E + + +G A+ ++ RK+ NL +N +LI +NQ R + NP+ Sbjct: 160 QSKLEANTDSESATVGQQAKALAIMARKVQANLSYNNGMLIGLNQGRDDMKA--PNPKYA 217 Query: 209 --TTTGGNALKFYASVRLDIRRIGAVK---EGENVVGSETRVKVVKNKIAAPFKQA-EFQ 262 + GG + + S RL I++ A+K +N VG +T+V VVK+K+ A + Sbjct: 218 QTKSLGGKGWEHFTSSRLRIQKTTAIKMHNSDKNAVGFDTKVTVVKSKVGDNVTDAVTIK 277 Query: 263 ILYGEGIN-----FYGELVDLGVKEKLIEKAGAWYSY---KGEKI-GQGKANATAWLKDN 313 +L G + FYG GV E +I+ +G WY+Y GE+I QG + ++LK + Sbjct: 278 LLGARGFDRETNIFYG-----GVDEGIIKGSG-WYTYVNDDGEQIKKQGWVDFVSYLKSD 331 Query: 314 --PETAKEIEKKV 324 ETA EI +KV Sbjct: 332 EGKETANEIWRKV 344 >UniRef50_UPI0001AF06D9 RecA-like recombinase n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF06D9 Length = 734 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 23/190 (12%) Query: 41 ISTGSLSLDIALGA---GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 + TG L+ A+ GG+P GRIVE+YGP SSGKT ++ AQ G F D E Sbjct: 31 LDTGDPELNFAISGRYDGGIPYGRIVEMYGPPSSGKTAEATDLMIRAQEAGGIAMFFDWE 90 Query: 98 HALDPIYARKLGVDIDN--LLCSQPDTGEQ----ALEICDALARSGAVD-----VIVVDS 146 + D A+ LG+ + + +P+T E+ A+ + + S + + V DS Sbjct: 91 RSFDINLAKNLGLKTERPFWIYKKPETWEEGNVLAMRAVELIRNSATIPDDAPIICVFDS 150 Query: 147 VAALTPKAEI------EGEIGDSHMG---LAARMMSQAMRKLAGNLKQSNTLLIFINQIR 197 VA+ P++ + EI +M AR S +++ +A ++ N +++NQ R Sbjct: 151 VASAIPQSVYYDNKGKKREIDTFNMSDNTALARASSTSLKVIAQTAEKYNATFLYLNQQR 210 Query: 198 MKIGVMFGNP 207 KIGVMFG+P Sbjct: 211 TKIGVMFGDP 220 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 7/92 (7%) Query: 210 TTGGNALKFYASVRLDIRR---IGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 T GG++ ++YASVR+ + R + V + VG + K+VK K+ PF++ ++ + Sbjct: 583 TPGGSSFEYYASVRIALGRTKLMETVNGKKQFVGQDIATKIVKTKLTKPFQETTMRMWFD 642 Query: 267 E-GINFYGE---LVDLGVKEKLIEKAGAWYSY 294 + G+ F+ LV+ + +++++GA+ + Sbjct: 643 KNGVAFFDRHYNLVEFLKAKGILKQSGAYIEW 674 >UniRef50_C1KFR4 Putative recombinase A n=1 Tax=Lactobacillus phage Lb338-1 RepID=C1KFR4_9CAUD Length = 400 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 151/343 (44%), Gaps = 48/343 (13%) Query: 55 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDN 114 GG+P GRI EIY PE GK+T + + A G ++DAE D +LGVD + Sbjct: 50 GGIPFGRITEIYAPEQVGKSTFMIYLNRVASALGADTFWLDAEGTSDGDRMEELGVDPAH 109 Query: 115 LLCSQPDTGE-QALEI--------------CDALARSGAVDVIVVDSVAALTPKAEIEGE 159 PD ++L + D +R +++ DS+ +AE + Sbjct: 110 TFIYSPDKNNGESLNVEQVGATIENIINTYKDDESRKDTPLLVIWDSIGGTITQAEQNTD 169 Query: 160 IGDS-HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM--FGNPETTTGGNAL 216 G+ G A +++ +RK+ L+ N L+ INQ+R M + GG AL Sbjct: 170 FGEEGQRGRQAAAVTKLVRKITPMLRDVNIALVAINQVRANQDAMNKYAPKTIAGGGEAL 229 Query: 217 KFYASVRLDIRRIGAVK---EGEN---VVGSETRVKVVKNKIAAPFKQAEFQIL------ 264 K ++RL++ + +K +GE+ G +K+ K+K + P ++A+ +L Sbjct: 230 KHADALRLELAKSTQIKGKYKGESDDTYEGHLITMKIDKSKQSRPHQKAQAALLAGWLLK 289 Query: 265 ---YGEGI----NFYGELVDLGVKEKLIEKAGAWYSYK---GEKIGQGKANATAWLKDNP 314 Y GI N Y + +LG LI+ +G + Y GE+I + + LKD+P Sbjct: 290 NNAYLNGIDYEYNMYMDAKELG----LIKASGGYRKYTTLAGEEINAYEVDFLKRLKDDP 345 Query: 315 ETAKEIEKKVRELLLS--NPN--STPDFSVDDSEGVAETNEDF 353 KE+ + E + + +P + + D GV E + F Sbjct: 346 NLTKELFIRSMETIWTEGHPRYLDNKNLNCDAWPGVKELRKYF 388 >UniRef50_B9L413 RecA protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L413_THERP Length = 357 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 26/278 (9%) Query: 58 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLC 117 P GR++E+ GP SGK TL + + QR G A++DA H++D GV + +LL Sbjct: 98 PRGRLIELAGPTYSGKRTLAGWFVRSVQRAGGWVAYLDAAHSVDFDRLHHWGVAVLDLLV 157 Query: 118 SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 177 + P + +ALE+ L SGA+D++V+D L P H+ L + + + +R Sbjct: 158 ALPQSVTEALELARLLVLSGALDLVVLD----LPP-----------HLALRS-ALDRGLR 201 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEN 237 +L L+ T + + P T L+ +L R G + Sbjct: 202 QLRPLLRGLPTAFVVVRD-------RVDTPALATAQVRLRLEPLTQLV--RPGPLAAQAL 252 Query: 238 VVGSETRVKVVKNKIAAPF-KQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKG 296 G V++ + + P ++ EG+ E +DLG+ +I + Sbjct: 253 PEGLRVHVRIERGPLWPPRDPPVPIELCLREGVRVALERIDLGLALGVIRLHSLGLVFAE 312 Query: 297 EKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS 334 +G+ + A L+ +P ++E+++R LS S Sbjct: 313 TVLGRTRERAAVRLQSDPSLWSQLEEEIRVRWLSGDRS 350 >UniRef50_Q1IJA5 RecA/RadA recombinase-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJA5_ACIBL Length = 252 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 18/174 (10%) Query: 42 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 101 +TG +LD L GGLP+G + E++GPE SG+T++ L +A REG CA+ID +LD Sbjct: 35 TTGIAALD-RLTGGGLPVGAVCELFGPECSGRTSVALAFLAQITREGTACAWIDVADSLD 93 Query: 102 PIYARKLGVDIDNLL---CSQPDTG----------EQALEICDALARSGAVDVIVVDSVA 148 P A GVD+ LL CS +T +QAL D + ++G +V D + Sbjct: 94 PESAAACGVDLRRLLWVRCSDAETRRARGKMWSRLDQALRAADLVLQAGGFGAVVFD-MG 152 Query: 149 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL---KQSNTLLIFINQIRMK 199 A+ P+ + + AA +QA L + K + L + ++++R + Sbjct: 153 AVPPEKALRVPLASWFRFRAAAERTQATFLLLSQVSCAKSCSALQLKLDRLRTR 206 >UniRef50_Q01QX0 RecA domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QX0_SOLUE Length = 224 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 21/160 (13%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E + TG +D A GGLP G + EI GP SSG+T+L L ++AAA +TCA +DAE Sbjct: 27 ELVPTGVADVDSA--TGGLPRGCLTEIVGPASSGRTSLLLSILAAATARQETCALVDAED 84 Query: 99 ALDPIYARKLGVDIDNLL---CSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 155 A P A GV + LL C + E AL+ D L + G ++V+D Sbjct: 85 AFAPHSAADAGVQLSRLLWVRCGH--SAEHALKAADLLIQGGGFGLVVMD---------- 132 Query: 156 IEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 +GD+ A R+ + +L ++ + T+L+ I + Sbjct: 133 ----LGDTAPATARRISLTSWFRLRRAVEHTPTVLLSIAR 168 >UniRef50_Q1D5A2 Putative recA protein n=2 Tax=Cystobacterineae RepID=Q1D5A2_MYXXD Length = 290 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/112 (39%), Positives = 66/112 (58%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 + TG ++D L GGLP+G++VE+ G +SG+T+L L +AAA +E + CA++D L Sbjct: 39 LRTGLSAVDALLPTGGLPLGQVVELCGEAASGRTSLALHAVAAAHQEARLCAWVDGPREL 98 Query: 101 DPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 152 A LGVD++ LL +P EQ + LARSGA +V+D + P Sbjct: 99 YSPSAAALGVDLERLLIVRPQASEQRIWAAVQLARSGAFACVVLDLTRGMNP 150 >UniRef50_C2BP13 Putative uncharacterized protein (Fragment) n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 RepID=C2BP13_9CORY Length = 102 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 46/62 (74%) Query: 267 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 EGI+ ++DLGV+ I K+G+W++Y+G+++GQGK A +LKDNP+ A EIE+K+ + Sbjct: 1 EGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGKEKARNFLKDNPDLANEIEQKIFQ 60 Query: 327 LL 328 L Sbjct: 61 KL 62 >UniRef50_P04529 Recombination and repair protein n=12 Tax=T4-like viruses RepID=UVSX_BPT4 Length = 391 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/276 (23%), Positives = 122/276 (44%), Gaps = 19/276 (6%) Query: 48 LDIALG---AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP 102 ++IAL GG+ G ++ + GP S K+ L ++++ R+ C F D+E + P Sbjct: 39 MNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 97 Query: 103 IYARKLGVDIDNLLCSQPDTGEQ----ALEICDALARSGAVDVIVVDSVAALTPKAEIEG 158 Y R +GVD + ++ + + EQ + DA+ R V V+ +DS+ L K E E Sbjct: 98 AYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKV-VVFIDSLGNLASKKETED 156 Query: 159 EIGDSHMG--LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 216 + + + A+ M R + N I IN + MF +T GG Sbjct: 157 ALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT-YETQEMFS--KTVMGGGTG 213 Query: 217 KFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV 276 Y++ + I +K+G ++ G + + V K++ + + + GI+ Y L+ Sbjct: 214 PMYSADTVFIIGKRQIKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLL 273 Query: 277 DLGVKEKLIEKA-GAWYS--YKGEKIGQGKANATAW 309 D+ ++ + K WY+ + E+ G+ +W Sbjct: 274 DMALELGFVVKPKNGWYAREFLDEETGEMIREEKSW 309 >UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Tax=Methanomicrobiales RepID=RADB_METMJ Length = 224 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 82/174 (47%), Gaps = 17/174 (9%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 M + +STGS + D LG GGL I +IYG +SGK+TL L A R G + +ID Sbjct: 1 MKTDRVSTGSTAFDDLLG-GGLERRAITQIYGEPASGKSTLCLMAAVATLRAGNSVVYID 59 Query: 96 AE----HALDPIYARKLGVDIDNLLCSQP-DTGEQALEICDA--LARSG--AVDVIVVDS 146 E I G D L +P D +Q I DA L ++G V ++V+DS Sbjct: 60 TEGFSVERFTQIAGENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVGLLVMDS 119 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 AL E ++G A R +S M KL G K+ + ++ NQI M + Sbjct: 120 ATALY---RTELDLGRE----AIRKLSHHMIKLLGLAKKYDIPVLITNQIYMDV 166 >UniRef50_Q7Y594 UvsX RecA-like recombination protein n=3 Tax=unclassified T4-like viruses RepID=Q7Y594_BPR69 Length = 390 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/277 (24%), Positives = 121/277 (43%), Gaps = 20/277 (7%) Query: 48 LDIALGAG---GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALDP 102 L+IALG GL G + P KT L ++AA ++ K C F D+E Sbjct: 39 LNIALGGALNAGLQSGLTI-FAAPSKHFKTLFGLTMVAAYMKKYKDAICLFYDSEFGASE 97 Query: 103 IYARKLGVDIDNLLCSQPDTGEQALEI-----CDALARSGAVDVIVVDSVAALTPKAEIE 157 Y R +GVD+D ++ + + EQ L++ DA+ R V +I +DS+ K E E Sbjct: 98 SYFRSMGVDLDRVVHTPIQSVEQ-LKVDMTNQLDAIERGDKV-IIFIDSIGNTASKKETE 155 Query: 158 GEIGDSHMGLAAR--MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNA 215 + + +G +R + R + L + + IN M+IG ++ P+ GG Sbjct: 156 DALNEKVVGDMSRAKALKSLFRIVTPYLTIKDIPCVAINHTAMEIGGLY--PKEIMGGGT 213 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 275 Y++ + VKEG + G + +K K++ + + GI+ + L Sbjct: 214 GILYSANTVFFISKRQVKEGTELTGYDFTLKAEKSRTVKEKSTFPITVNFDGGIDPFSGL 273 Query: 276 VDLGVKEKLIEKAGA-WYS--YKGEKIGQGKANATAW 309 +++ + + K A WY+ + E+ G+ +W Sbjct: 274 LEMATEIGFVVKPKAGWYAREFLDEETGEMIREEKSW 310 >UniRef50_A4WN87 DNA repair and recombination protein radA n=17 Tax=Archaea RepID=RADA_PYRAR Length = 333 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 30/217 (13%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----- 87 +R + ISTG SLD LG GG+ + E+ G SGKT L Q+ Q Sbjct: 94 ERRKKIRRISTGVRSLDELLG-GGIETRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGG 152 Query: 88 -GKTCAFIDAEHALDP----IYARKLGVDID----NLLCSQPDTGEQAL---EICDALAR 135 G +ID E+ P AR G+D D N+ ++ + + + E ++ + Sbjct: 153 LGAKAIYIDTENTFRPERIMQMARARGLDPDQALNNIFYARAYSSDHQMILVEHAKSIVK 212 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ----SNTLLI 191 V +IVVDSV A ++E G LA R Q + K +L + + ++ Sbjct: 213 QHNVALIVVDSVIAHF-RSEFPGR-----ENLAER--QQKLNKHVADLLRLADAYDVAVV 264 Query: 192 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 228 NQ+ + V FGNP GGN L A+ RL +R+ Sbjct: 265 ITNQVMAQPDVFFGNPLRPAGGNILAHGATYRLWLRK 301 >UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=RADB_METST Length = 232 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 32/230 (13%) Query: 47 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----- 101 SLD LG GG+ G I + YGP SGKT + L+++ A + G ++D E L Sbjct: 18 SLDKLLG-GGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSKAIYMDTEGGLSLERIQ 76 Query: 102 PIYARKLGVDIDNLLCSQPDT-GEQALEIC---DALARSGAVDVIVVDSVAALTPKAEIE 157 I G N+ +P + EQ L+I D L + ++D++++DS+ AL Sbjct: 77 QIAGTDFGSISKNIYILEPKSFDEQILDIQNIEDILKKDKSIDMLIIDSIVALY------ 130 Query: 158 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV--MFGNPETTTGGNA 215 + D + + + M KL ++ N ++ NQI + P GG Sbjct: 131 -RVEDGDPSEINKRLGRLMAKLLRLSREYNVAIVITNQIYSPFDSDDLIIEP---IGGTV 186 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVV-KNKIAAPFKQAEFQIL 264 LK+++ + ++I E V S R + ++K AP + +F+I+ Sbjct: 187 LKYWSKIIIEI---------EKSVDSLKRTATLQRHKTKAPGQSIKFEII 227 >UniRef50_C8XUF9 UvsX RecA-like recombination protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUF9_9CAUD Length = 361 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 16/263 (6%) Query: 42 STGSLSLDIALGA---GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDA 96 STG +DIA GGL G I + G + KT L + A + C F D+ Sbjct: 36 STGIPLIDIAWSGRIDGGLISG-IKMMVGDSRTFKTMFGLVDVKAYMDKFPDALCIFADS 94 Query: 97 EHALDPIYARKLGVDIDNLLCSQPDTGEQA----LEICDALARSGAVDVIVVDSVAALTP 152 E + Y +G+D+D +L D EQ L+I + + V +I +DS++ L Sbjct: 95 EKGANADYWTSMGIDMDRVLYVPIDNVEQTKIRLLQILQEVKKGDHV-IIFIDSISQLPS 153 Query: 153 KAEIEGEI--GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 E+E I D+ AR ++ R + + + +L++IN +IG + P Sbjct: 154 TKEVEDAIKGNDTQDMTRARALNSFWRVITPEINSKDLVLVWINSYYDEIGNQYAEPNIK 213 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 G F +S + VKE ++++G + ++K + + +LY GI+ Sbjct: 214 GGKQG--FLSSNLIWFITRSQVKEDKDLLGWNFNIGIMKGRHVKEKAKLPVTVLYDGGID 271 Query: 271 FYGELVDLGVKEKLIE-KAGAWY 292 + L+++ ++ + WY Sbjct: 272 RWSGLLEIARALGYVDMPSSGWY 294 >UniRef50_Q14565 Meiotic recombination protein DMC1/LIM15 homolog n=44 Tax=Eumetazoa RepID=DMC1_HUMAN Length = 340 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 32/221 (14%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-- 89 E R M V I+TGS D LG GG+ I E +G +GKT L+ + AQ G Sbjct: 93 EKRKM-VFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG 150 Query: 90 ----TCAFIDAEHALDPIYAR----KLGVD----IDNLLCSQPDTGEQALEICDALA--- 134 FID E+ P R + VD +DN+L ++ T E +E+ D +A Sbjct: 151 YPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKF 210 Query: 135 --RSGAVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 +G ++++DS+ AL + + GE+ + LA Q + +L ++ N + Sbjct: 211 HEEAGIFKLLIIDSIMALF-RVDFSGRGELAERQQKLA-----QMLSRLQKISEEYNVAV 264 Query: 191 IFINQIRMKIGVMF---GNPETTTGGNALKFYASVRLDIRR 228 NQ+ G +P+ GG+ L ++ R+ +R+ Sbjct: 265 FVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRK 305 >UniRef50_C1F5L9 Putative uncharacterized protein n=2 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5L9_ACIC5 Length = 345 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I TG +D L GGLP+G + E+ GPE+SG+T L L + + G+ CA+ID Sbjct: 34 IPTGVAEMDAMLD-GGLPVGAMTEMAGPETSGRTALALSFLRSLTDTGRACAWIDVSDTF 92 Query: 101 DPIYARKLGVDIDNLL 116 DP A +GVD+ +L Sbjct: 93 DPESAAAVGVDLARVL 108 >UniRef50_D2EF50 DNA repair and recombination protein RadA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EF50_9EURY Length = 345 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 107/246 (43%), Gaps = 31/246 (12%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----- 86 ED+ V+ IST S +L+I LG GG+ I E YG SGK+ L Q+ Q Sbjct: 97 EDKRKSVQRISTSSEALNILLG-GGVETQSITECYGEYGSGKSQLAFQLAVDVQLPLEKG 155 Query: 87 --EGKTCAFIDAEHALDPIYARKL----GVD----IDNLLCSQPDTGEQALEICDALAR- 135 EG +ID E P +L G+D + N+ + + + + + D + Sbjct: 156 GLEGHAI-WIDTEGTFRPSRIEQLAAVKGLDPKQALQNIKIGRAYSSDHQVLLVDKVPEL 214 Query: 136 ---SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 192 + +IVVDS+ AL +AE G ++ +++LA N + Sbjct: 215 INADPKIKLIVVDSMMALF-RAEYVGRGTLVDRQQKVNVVLHNLQRLADRF---NVAVYI 270 Query: 193 INQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVK 246 NQ+ + VMFG+P GG+ + A+ R+ +R R+G + + ++ E + Sbjct: 271 TNQVMARPDVMFGDPTAAVGGHIIGHVATYRIYLRKGKKGSRVGKLVDSPSLPEGEASFE 330 Query: 247 VVKNKI 252 + N I Sbjct: 331 ITSNGI 336 >UniRef50_C1AAH5 RecA protein homolog n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAH5_GEMAT Length = 353 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 43 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 102 TG +LD ALG GG+P GRI E+ GP + GK+ L QVI G A+IDA L P Sbjct: 29 TGVPALDRALG-GGIPRGRITELVGPLAVGKSGLLRQVITQVLATGSWAAWIDATRTLAP 87 Query: 103 IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 151 +G L+ + T +A D L RSG ++V+D +L+ Sbjct: 88 EPWTGMGA---RLVVVRLPTPHRAAWTADLLLRSGVFGLVVIDGAPSLS 133 >UniRef50_A8AB83 DNA repair and recombination protein radA n=16 Tax=Archaea RepID=RADA_IGNH4 Length = 327 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 30/243 (12%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 QK + AA ++ +F ++L M++ I+TGS +LD LG GG+ I E +G Sbjct: 58 QKIIRAARQMLDIRFRTAKEVKL---ERMNLRKITTGSKNLDDLLG-GGIETKTITEFFG 113 Query: 68 PESSGKTTLTLQVIAAAQ--------REGKTCA---FIDAEHALD----PIYARKLGVD- 111 SGK+ L Q Q EG A ++D E A+ LG+D Sbjct: 114 EFGSGKSQLCHQASVNVQLPLEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGLDP 173 Query: 112 ---IDNLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 165 +DN+ + + + I + L V +IVVDSV + +AE G ++ Sbjct: 174 DQVMDNIYYIRAVNSDHQMAIVEELFNLVPKENVKLIVVDSVTSHF-RAEYPGR---ENL 229 Query: 166 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 225 + + +++ + +L + NT +I NQ+ + V +G+P GG+ L VR+ Sbjct: 230 AVRQQKLNKHLHQLGKLAEVYNTAVIITNQVMARPDVFYGDPTQAVGGHVLYHAPGVRVQ 289 Query: 226 IRR 228 +++ Sbjct: 290 LKK 292 >UniRef50_Q5GQK3 RecA-like recombination protein n=6 Tax=root RepID=Q5GQK3_BPSYP Length = 343 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 77/318 (24%), Positives = 135/318 (42%), Gaps = 36/318 (11%) Query: 37 DVET-ISTGSLSLDIALGA---GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 92 DVE+ + TGS + + GG+P +I + G +GKT L V+ Sbjct: 27 DVESFVDTGSYIFNALVSGSIFGGIPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAG 86 Query: 93 --FIDAEHALDPIYARKLGVDIDNLLCSQPDTGE----QALEICDALARSGAVD----VI 142 + + E A+ G+D ++ DT E QA+ I D + + Sbjct: 87 VIYFETESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIIDKYMEQNKSERKPLMF 146 Query: 143 VVDSVAALTPKAEIEGEIGDSHMG--LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 V+DS+ L K E+E D + A+++ A R L + ++N ++ N + Sbjct: 147 VLDSLGMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGKANIPMLVTNHTYDVV 206 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--GENVVGSETRVKVVKNKIAAPFKQ 258 G E GG+ LK+ AS I +G KE G ++VG+ + + K+++ + Sbjct: 207 GSYVPTKE-MGGGSGLKYSAST---IVYLGKKKEKDGTDLVGNIIKCEAKKSRLTREGSK 262 Query: 259 AEFQILYGE-GINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP--- 314 E ++ + + G+ Y +++LG E+AG W + G GK + NP Sbjct: 263 VETRLFFDQRGLERYYGMLELG------ERAGLWKNTAGRYEINGKKVYGKQILANPDEF 316 Query: 315 ---ETAKEIEKKV-RELL 328 E +E++K+ RE L Sbjct: 317 FTEEILQELDKQAQREFL 334 >UniRef50_O27728 DNA repair and recombination protein radB n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=RADB_METTH Length = 234 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 24/207 (11%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 89 +GE+R + E+ S+D LG GG+ I + YGP SGKT +T+++ R GK Sbjct: 7 MGENRRIPTES------SIDRILG-GGVERRTITQFYGPPGSGKTNITIKLAVETARRGK 59 Query: 90 TCAFIDAEHALDPIYARKLGVDI-----DNLLCSQPDT----GEQALEICDALARSG-AV 139 FID E L R++ DI D+++ +P + GE L G + Sbjct: 60 NTVFIDTEGGLSVERIRQVSGDIFDRVADSIIVFEPSSFTEQGEALQRTFSFLKTHGDST 119 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 D++V+DS AL E + +G ++ Q R+ + + NQI Sbjct: 120 DLVVLDSAVALYRLKEGNASSFNLDLGRQMFLLLQMARRF-------DLAAVITNQIYSI 172 Query: 200 IGVMFGNPETTTGGNALKFYASVRLDI 226 G + GG L++++ V +++ Sbjct: 173 TGDDGREYVSPVGGTLLRYWSKVMVEL 199 >UniRef50_Q39009 Meiotic recombination protein DMC1 homolog n=49 Tax=Eukaryota RepID=DMC1_ARATH Length = 344 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 36/244 (14%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKT 90 V I+TG +LD LG GG+ I E +G SGKT L + Q GK Sbjct: 105 VVKITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKV 163 Query: 91 CAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGA---V 139 A+ID E P A + G+D +DN++ ++ T E + LA + Sbjct: 164 -AYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPF 222 Query: 140 DVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 197 +++VDS+ AL + + GE+ D LA Q + +L ++ N + NQ+ Sbjct: 223 RILIVDSIIALF-RVDFTGRGELADRQQKLA-----QMLSRLIKIAEEFNVAVYMTNQVI 276 Query: 198 MKI--GVMFGNPETTTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVKVVK 249 G+ +P+ GG+ L A++RL R R+ V + N+ +E ++ + Sbjct: 277 ADPGGGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQ 336 Query: 250 NKIA 253 IA Sbjct: 337 GGIA 340 >UniRef50_P37384 Meiotic recombination protein DMC1 homolog n=10 Tax=Eukaryota RepID=DMC1_LILLO Length = 349 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 36/241 (14%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAF 93 I+TGS +LD LG GG+ +I E +G SGKT + + + Q GK A+ Sbjct: 113 ITTGSQALDELLG-GGIETLQITEAFGEFRSGKTQIAHTLCVSTQLPVSMHGGNGKV-AY 170 Query: 94 IDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGAVD---VI 142 ID E P A + G+D +DN++ ++ T E + ALA + + ++ Sbjct: 171 IDTEGTFRPDRIVPIAERFGMDASAVLDNIIYARAYTYEHQYNLLLALAAKMSEEPFRLL 230 Query: 143 VVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 +VDSV AL + + GE+ + LA Q + +L ++ N + NQ+ Sbjct: 231 IVDSVIALF-RVDFSGRGELAERQQKLA-----QMLSRLTKIAEEFNVAVYMTNQVIADP 284 Query: 201 G--VMFGNPETTTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVKVVKNKI 252 G + +P+ GG+ L A+VRL +R R+ + + N+ SE ++ + Sbjct: 285 GGGMFISDPKKPAGGHVLAHAATVRLMLRKGKGEQRVCKIFDAPNLPESEAVFQITPGGV 344 Query: 253 A 253 A Sbjct: 345 A 345 >UniRef50_Q8TWK1 RadA recombinase n=1 Tax=Methanopyrus kandleri RepID=Q8TWK1_METKA Length = 316 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 89 L E++ DV I TG D +G GGLP G IV +YGP +GK+ QV A A +EG+ Sbjct: 80 LEEEKKRDV--IPTGIQGFDERMG-GGLPTGVIVGMYGPPGAGKSQFATQVAAHALKEGE 136 Query: 90 TCAFIDAEHALDP 102 + +ID E+A P Sbjct: 137 SVLYIDTENAFRP 149 >UniRef50_Q8TVF0 RadA recombinase n=1 Tax=Methanopyrus kandleri RepID=Q8TVF0_METKA Length = 317 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 39/245 (15%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REG---KTCAFI 94 I+TGS +LD LG GG+P G + E GP SGK+ + Q+ Q EG FI Sbjct: 77 ITTGSSALDEILG-GGVPCGELTEFAGPFGSGKSQIVFQLCVNVQLPEEEGGLESKAIFI 135 Query: 95 DAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQ---ALEICDALARSGAVDVIV 143 D E + P A LG+D + N+ +Q + E+ A E L + ++V Sbjct: 136 DTEGTVSPGRIKGMAEALGLDPGEALRNVFVTQVRSVEEQMRAAEEAHKLCEREDIGLVV 195 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQA--MRKLAGNLKQSNTLLIFINQIRMKIG 201 +DS+ A +AE ++GD AR+M +R LA + + ++F NQ+ + I Sbjct: 196 IDSLTAHF-RAEY-SKLGDVS-ERQARLMKHVDQLRNLAMD---HDVAVVFTNQVHVDIE 249 Query: 202 VMF---GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQ 258 G GG + A+ R+ +RR E R+ + + P ++ Sbjct: 250 AATKGKGRRYEPVGGTIVAHQATHRIMLRR----------AKGEVRIARIIDSPYLPQRE 299 Query: 259 AEFQI 263 A F+I Sbjct: 300 AAFRI 304 >UniRef50_A0RYZ3 RecA/RadA recombinase related protein n=1 Tax=Cenarchaeum symbiosum RepID=A0RYZ3_CENSY Length = 218 Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 25/186 (13%) Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP------IYARKLGVD--ID 113 I +I+GP +SGK+ + ++ A A EG F D L P + +R LG + +D Sbjct: 22 ITDIFGPPASGKSQIAFEICAGALAEGGRVIFHDTSGTLRPERILQILRSRGLGGEGLLD 81 Query: 114 NLLCSQ-PDTGEQALEICDALARSGA-VDVIVVDSVAALTPKAEIEGEIGDSHMGLAA-R 170 ++ S+ +TGEQA L++ G ++VVD+ L E L R Sbjct: 82 RMIVSRMTNTGEQA----AGLSQIGPEASLVVVDNATEL-----FSFEYAGRERSLPRNR 132 Query: 171 MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 230 ++ Q MR+L+G +I N +R G G E +A++ + VR+ +RR+G Sbjct: 133 LLMQYMRRLSGAAVALRVPVIVTNTVRFIEG---GEAENLA--SAMRPFPHVRIHLRRMG 187 Query: 231 AVKEGE 236 V E Sbjct: 188 GVTAAE 193 >UniRef50_C1SIU0 RecA bacterial DNA recombination protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIU0_9BACT Length = 57 Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 23/35 (65%), Positives = 29/35 (82%) Query: 291 WYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVR 325 W+SYK K+GQGK N+ A+LKDNPE A+EIE K+R Sbjct: 6 WFSYKDAKLGQGKENSRAYLKDNPEIAQEIEDKIR 40 >UniRef50_UPI0001742DF1 hypothetical protein cdivTM_26973 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742DF1 Length = 61 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%) Query: 22 FGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL 76 +G+G+IM+LGE+ M++ ISTGSL+LDIALG GG+ G ++ GK L Sbjct: 2 YGEGAIMKLGENTKMNIRAISTGSLNLDIALGVGGVQEGELLRFMEQSLRGKLLL 56 >UniRef50_A2SR54 DNA repair and recombination protein radA n=31 Tax=Archaea RepID=RADA_METLZ Length = 329 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 41/242 (16%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------ 87 R DV + T +D G GGL I E+YG SGK+ + Q+ Q Sbjct: 75 RRQDVLKLKTLVPEIDELFG-GGLETQAITELYGEFGSGKSQIAHQLAVNCQLPQELGGL 133 Query: 88 GKTCAFIDAEHALDPIYARKL--GVDIDNL----LCSQPD-------------TGEQAL- 127 G +C +ID E+ P ++ G+++ +L + PD + Q L Sbjct: 134 GGSCLYIDTENTFRPERIEQMAEGLELADLPEGYVVPTPDEFLANIHVARAHSSDHQMLL 193 Query: 128 -----EICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM--MSQAMRKL 179 E+ + L SG V ++++DS+ +L ++E G LA R +++ M L Sbjct: 194 IDAARELSNELTASGLPVKLVIIDSLTSLF-RSEYAGR-----GTLAGRQQKLNRHMHDL 247 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV 239 + N + + NQ+ G++FG+P GGN + A+ R+ +R+ A K +V Sbjct: 248 FKLVDDLNAVALVTNQVMANPGLLFGDPTKPIGGNIVGHTATYRVYLRKSKAGKRIARLV 307 Query: 240 GS 241 S Sbjct: 308 DS 309 >UniRef50_UPI00016981C8 recombinase A n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016981C8 Length = 71 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/32 (71%), Positives = 30/32 (93%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDR 34 +D+N+ KAL+AALGQIEKQFGKGS+MR+G+ R Sbjct: 1 MDDNRAKALSAALGQIEKQFGKGSVMRMGDSR 32 >UniRef50_Q6YPL0 Putative uncharacterized protein n=1 Tax=Onion yellows phytoplasma RepID=Q6YPL0_ONYPE Length = 61 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 35/53 (66%) Query: 274 ELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 E++DL LI+K+G+WYS+K EKIGQG N +L +NP+ + ++++ Sbjct: 3 EVIDLATNLNLIQKSGSWYSFKDEKIGQGTENVKKYLTNNPKIYNHLVAEIKK 55 >UniRef50_C1FJ81 DMC1 DNA recombinase n=5 Tax=Chlorophyta RepID=C1FJ81_9CHLO Length = 359 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 27/226 (11%) Query: 25 GSIMRLGEDRSMDVETIS--TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 82 GS + E SM +TI+ TG+ ++D LG GG+P I E+YG GKT + + Sbjct: 104 GSFVTAKEWMSMRKDTINIRTGADTIDAILG-GGVPTRSITEMYGEWRCGKTQICHTLAV 162 Query: 83 AAQ---REGKTC---AFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGE---Q 125 Q EG C AFID E A + +D +DN+L ++ T E Sbjct: 163 TTQLPLDEGGGCAKVAFIDTEGTFRAERIVQIAERFNLDSDAVLDNILVARTFTHEMMDN 222 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 AL + ++++DS+ A + + IG + + + Q + KL + Sbjct: 223 ALTLLAGKFSEEPFKILIIDSIMAHF-RVDF---IGRGELSERQQRLGQFLAKLNKIADE 278 Query: 186 SNTLLIFINQIRMK-IGVMFG--NPETTTGGNALKFYASVRLDIRR 228 N +++ NQ++ G+ F +P+ GG+ L + VRL +R+ Sbjct: 279 FNIAVVYTNQVQADPSGMSFAGMDPKKAIGGHVLAHASHVRLSVRK 324 >UniRef50_Q8IB05 Meiotic recombination protein dmc1-like protein n=11 Tax=Apicomplexa RepID=Q8IB05_PLAF7 Length = 347 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 27/209 (12%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAF 93 I+TGS D LG GG+ I E++G GKT + + AQ GK C + Sbjct: 110 ITTGSTVFDQTLG-GGIESMCITELFGENRCGKTQVCHTLAVTAQLPKSLNGGNGKVC-Y 167 Query: 94 IDAEHALDP----IYARKLGVD----IDNLLCSQPDTGE---QALEICDALARSGAVDVI 142 ID E P A + G+D +DN+L ++ T E Q L I A ++ Sbjct: 168 IDTEGTFRPEKVCKIAERYGLDGEAVLDNILYARAFTHEHLYQLLAISAAKMCEEPFALL 227 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG- 201 VVDS+ +L + + G + + +++ M L+ +Q N ++ NQ+ G Sbjct: 228 VVDSIISLF-RVDFSGR---GELSERQQKLNKTMSILSKLSEQFNIAILITNQVMSDPGA 283 Query: 202 --VMFGNPETTTGGNALKFYASVRLDIRR 228 NP GG+ + +++RL +R+ Sbjct: 284 TMTFIANPMKPVGGHVIGHASTIRLSLRK 312 >UniRef50_Q95Q25 Protein Y43C5A.6a, confirmed by transcript evidence n=5 Tax=Caenorhabditis RepID=Q95Q25_CAEEL Length = 395 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/263 (25%), Positives = 121/263 (46%), Gaps = 43/263 (16%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 D+ +K + A+ ++ F G+ + + RS V+ I TGS SLD LG GG+ G I Sbjct: 122 DQKAEKIMKEAMKFVQMGFTTGAEVHV--KRSQLVQ-IRTGSASLDRLLG-GGIETGSIT 177 Query: 64 EIYGPESSGKTTLTLQVIAAAQR-------EGKTCAFIDAEHALDP----IYARKLGVD- 111 E+YG +GKT L + Q EGK C +ID P A++ +D Sbjct: 178 EVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGK-CMYIDTNATFRPERIIAIAQRYNMDS 236 Query: 112 ---IDNLLCSQPDTGEQALEICDALARSGAV------DVIVVD-SVAALTPKAEIEGEIG 161 ++N+ ++ E + + + R+GA+ V++VD + A + G++ Sbjct: 237 AHVLENIAVARAYNSEHLMAL---IIRAGAMMSESRYAVVIVDCATAHFRNEYTGRGDLA 293 Query: 162 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI---GVMF-GNPETTTGGNALK 217 + M L+A + + + KLA + +I NQ+ ++ MF + + GG+ + Sbjct: 294 ERQMKLSAFL--KCLAKLA---DEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHIIA 348 Query: 218 FYASVRLDIRRIGAVKEGENVVG 240 ++ RL +R+ +GEN V Sbjct: 349 HMSTTRLYLRK----GKGENRVA 367 >UniRef50_A4YCN4 DNA repair and recombination protein radA n=12 Tax=Sulfolobaceae RepID=RADA_METS5 Length = 324 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 23/215 (10%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ----RE 87 E V+ I+TGS +LD LG GG+ + E++G SGKT + QV Q R Sbjct: 80 EQERASVKKITTGSQALDGLLG-GGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPERG 138 Query: 88 GKT--CAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQAL----EICDAL 133 G + +ID E A LG++ + N++ + + + E+ D + Sbjct: 139 GLSGKALYIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDII 198 Query: 134 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 193 A+ ++ ++VVDS+ + +AE G ++ + + +++ + +L + + +I Sbjct: 199 AKDNSIKLVVVDSITSHF-RAEYSGR---ENLAVRQQKLNRHLHQLVRLAEIYDLAVIVT 254 Query: 194 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 228 NQ+ + + +G+P GG+ L +R+ I++ Sbjct: 255 NQVMARPDMFYGDPTVAVGGHTLYHVPGIRVQIKK 289 >UniRef50_B2ZYC0 Rec A-like recombinase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYC0_9CAUD Length = 481 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 19/142 (13%) Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 +I+VDS A+ P+A + E ++ +GL AR ++ + ++ G L Q ++ +NQ+R Sbjct: 238 LILVDSYPAMNPEAN-DNEEANNSLGLHARFFAKHLPRVKGRLAQKMVAMVGVNQLREVP 296 Query: 201 GVMFGNPETTTGGNALKFYASVR--LDIRRIG----AVKEGENVV-------GSETRVKV 247 M+G E G AL+F + VR + R G A +GE V G + R + Sbjct: 297 MAMYGPKEKEACGQALRFNSDVRNWWNSRASGMPFNAKFDGEERVEIEPSADGGKDRYRY 356 Query: 248 V-----KNKIAAPFKQAEFQIL 264 V KNK+A P ++ +I Sbjct: 357 VQVVNKKNKLANPGRKMWVRIW 378 >UniRef50_O93748 DNA repair and recombination protein radA n=3 Tax=Thaumarchaeota RepID=RADA_CENSY Length = 398 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 67/274 (24%), Positives = 107/274 (39%), Gaps = 47/274 (17%) Query: 13 AALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 72 A G I K F GS + R + I+TG+ +LD LG GG+ I E++G SG Sbjct: 64 AETGAITKDFASGSEIY---KRRQSIGMITTGTDALDALLG-GGIETQAITEVFGEFGSG 119 Query: 73 KTTLTLQVIAAAQRE------GKTCAFIDAEHALDP----IYARKLGVDIDNLLCSQPDT 122 KT + Q+ G +ID E P A+ +D LL Sbjct: 120 KTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDG---- 175 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL-----------AARM 171 I A A + + V++++ + I+ I DS GL A+R Sbjct: 176 ------IIVARAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLFRSEYLGRGTLASRQ 229 Query: 172 --MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 229 + + +R LA + N ++ NQ+ FG+P GGN + ++ R+ R+ Sbjct: 230 QKLGRYIRLLARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKG 289 Query: 230 GAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 G K RV + + P +A F++ Sbjct: 290 GKNK----------RVAKIIDSPHHPASEAVFEL 313 >UniRef50_Q4N2W2 DNA repair protein rad51, putative n=2 Tax=Eukaryota RepID=Q4N2W2_THEPA Length = 343 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 40/254 (15%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAF 93 +TGS LD L GG+ G I EI G +GK+ L + Q EGK C + Sbjct: 105 FTTGSAQLDKLL-QGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGK-CLW 162 Query: 94 IDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEI---CDALARSGAVDVI 142 +D+E P A++ G+ +DN+ ++ + LE+ A+ ++ Sbjct: 163 VDSEGTFRPERIVSIAKRFGLSPSDCLDNVAYARAYNTDHQLELLVEASAMMAQTRFALL 222 Query: 143 VVDSVAALT-PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 +VDS +L GE+ M L + +A++++A ++ NQ+ K+ Sbjct: 223 IVDSATSLYRSDYSGRGELASRQMHLCKFL--RALQRIADTF---GVAVVITNQVVAKVD 277 Query: 202 VM---FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQ 258 M FGN + GG+ + + RL +R+ E+R+ + + P + Sbjct: 278 AMSTFFGNDKLPVGGHIIAHASQTRLFLRQ----------SKGESRICKIYDSPVLPEGE 327 Query: 259 AEFQILYGEGINFY 272 A F I G GIN Y Sbjct: 328 AVFAITDG-GINDY 340 >UniRef50_Q013L3 DNA repair protein RAD51/RHP55 (ISS) n=2 Tax=Chlorophyta RepID=Q013L3_OSTTA Length = 420 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 78/265 (29%), Positives = 116/265 (43%), Gaps = 58/265 (21%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGK 89 DV I+TG +D L GG+ G + EIYG +GKT L + Q EGK Sbjct: 179 DVIMITTGCAKVDEML-QGGIESGSVTEIYGEFRTGKTQLMHTLAVTCQLPIEQGGGEGK 237 Query: 90 TCAFIDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGA--- 138 C +ID E P A + +D +DN+ ++ E E+ A A A Sbjct: 238 -CLYIDTEGTFRPQRLIQIAERFQMDPGPVLDNVAYAKAHNTEHQTELLVAAAGMMAETR 296 Query: 139 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS--QAMRKLAGNLKQSNTLLIFINQI 196 ++++DSV L + E EG G+ L+AR M + +R+LA + +I NQ+ Sbjct: 297 FALMIIDSVTNLY-RTEYEGR-GE----LSARQMHLGKFLRQLARLADEFGVAVIVSNQV 350 Query: 197 RMKIGVMFGNPE----------TTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 246 NPE GGN + ++ RL +R+ GEN V +K Sbjct: 351 -------VANPEGGPFAGANALKPIGGNIMAHASTTRLALRK----GRGENRV-----MK 394 Query: 247 VVKNKIAAPFKQAEFQILYGE-GIN 270 +V + + P +A+F I GE GIN Sbjct: 395 IVCSPM-LPESEAQFSI--GEDGIN 416 >UniRef50_C6T5Z5 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T5Z5_SOYBN Length = 76 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 39/70 (55%) Query: 284 LIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDS 343 ++ K G+WY Y ++GQG+ A +LK+N +EIEK VR L+ N T + +S Sbjct: 4 IVSKKGSWYRYGDHRLGQGRDKAIQYLKENTHLLEEIEKVVRSSLIDGTNQTSPVHMKNS 63 Query: 344 EGVAETNEDF 353 + + ++ F Sbjct: 64 SVLHQDDDMF 73 >UniRef50_A4FYL0 DNA repair and recombination protein radB n=10 Tax=Methanococcales RepID=RADB_METM5 Length = 216 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 29/212 (13%) Query: 55 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG-VDID 113 G + I +IYGP GKT + + + A GK +ID E +L ++L D D Sbjct: 8 GNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLSEQDSD 67 Query: 114 NLLCS----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAA 169 LL S +P + E+ E + + + +IV+D + +L + E+ I ++ Sbjct: 68 ELLKSIIIYEPSSFEEQSEALEKIFFLENIGLIVIDGIVSLY-RLELCDNINENTK--LN 124 Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA--------- 220 RM+ + + L + N+ ++ NQ++ I N GG L++++ Sbjct: 125 RMLGKQISNLLKVARMKNSGILITNQVKDSI-----NGIEPAGGRLLEYWSKSIIKLEKT 179 Query: 221 -SVR-LDIRRIGAVKEGENVVGSETRVKVVKN 250 S+R L + + KEGEN+ R ++V+N Sbjct: 180 ESIRKLTLEKHRHAKEGENL-----RFRIVQN 206 >UniRef50_A6STQ0 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6STQ0_BOTFB Length = 383 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 21/107 (19%) Query: 35 SMDVETISTGSLSLDIAL--------------GAGGLPMGRIVEIYGPESSGKTTLTLQV 80 S ISTG LD+AL GG+P G++ EIYGP GKTTL + + Sbjct: 15 SSPTRCISTGLSLLDLALQNKDPLQVSTSVDHNHGGIPRGKVTEIYGPPGVGKTTLGMHL 74 Query: 81 IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 127 A + + ++DA H + G +L P T + L Sbjct: 75 AARVLHQNENVVWVDASHPIS-------GPRFSQILQESPSTSPEPL 114 >UniRef50_Q5A2U1 Putative uncharacterized protein RAD57 n=1 Tax=Candida albicans RepID=Q5A2U1_CANAL Length = 511 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 39/183 (21%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC---- 91 +D E ISTG S+D LG GG+P+G + EI+G GK+ Q+++ +E T Sbjct: 80 LDSEFISTGLPSIDRELG-GGIPIGEVTEIFGASGCGKSHFLFQLLSNCGKEFSTSKNIY 138 Query: 92 ----AFIDAEHALDPIYARKLGVDI----------------DNLLCSQ------PDTGEQ 125 +F++ + D I +D D++L +Q D G+ Sbjct: 139 ISTESFLETKRLKDFIGRNSSNIDTDLDRISYIYCQDLESQDHILFTQLPLKLDSDKGKT 198 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEI-EGEIGDSHMGLAARMMSQAMRKLAGNLK 184 L + D++A+ + +++S L K E+ EGEI D R + RK L+ Sbjct: 199 KLLVLDSIAQHFRREDSIMNS-TYLKEKLEVQEGEIADD------RSFQEVKRKQMNQLR 251 Query: 185 QSN 187 + N Sbjct: 252 RFN 254 >UniRef50_O28184 DNA repair and recombination protein radB n=3 Tax=Archaeoglobaceae RepID=RADB_ARCFU Length = 221 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 16/194 (8%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I TGS +D LG GG+ G + +IYG +GKTTL L + A + K A+ID E L Sbjct: 6 IPTGSKCIDSLLG-GGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQFKV-AYIDTE-GL 62 Query: 101 DPIYARKLGVD---IDNLLCSQPDTGEQ---ALEICDALARSGAVDVIVVDSVAALTPKA 154 R++ D N+ + Q A++ + L RS V +++VD +L ++ Sbjct: 63 SGERVRQIFGDERLFSNVFVYEVYRFRQQGVAIQEAEKLCRSEKVKLVIVDCFTSLY-RS 121 Query: 155 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 214 E+E D R ++ + L G ++ + ++ NQ+ +G P GG Sbjct: 122 ELE---DDRKQIKIKRELTSQLTFLLGMARKYDVAVVITNQMFTDVGSGVDRP---LGGP 175 Query: 215 ALKFYASVRLDIRR 228 +L+ + V + + R Sbjct: 176 SLEHLSKVIIALER 189 >UniRef50_A8TH99 AAA ATPase n=1 Tax=Methanococcus voltae A3 RepID=A8TH99_METVO Length = 280 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 74/153 (48%), Gaps = 10/153 (6%) Query: 55 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKL------ 108 G + I +IYGP SGKT + + + + + +ID E +L +++ Sbjct: 8 GEIEKKTITQIYGPPGSGKTNICIIAMIKFAKNNQKVIYIDTEGSLSTERVKQICPQDSE 67 Query: 109 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 168 G+ + LLC +P T E+ + ++L + +I+VD +++L + E+ + H Sbjct: 68 GIFKNTLLC-EPYTFEEQCNVIESLEAVENIGLIIVDGISSLY-RLELSNNV--FHNTEL 123 Query: 169 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 R +++ + L K+++T ++ NQ + IG Sbjct: 124 NRNLARQIHILNKIAKKNDTAVLLTNQAKDSIG 156 >UniRef50_B0R636 DNA repair and recombination protein radB n=4 Tax=Halobacteriaceae RepID=RADB_HALS3 Length = 236 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 36/248 (14%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 96 D + TG +LD LG GG+ G + ++YGP ++GKT + L G ++D Sbjct: 4 DDTHLPTGCGALDELLG-GGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVYVDT 62 Query: 97 E-------------HALDPIYARKLGVDIDNLLCSQP-DTGEQALEICDALARSGAVDVI 142 E A DP A N++ S D EQA + D + D+I Sbjct: 63 EGLSLARFQQLLEARATDPEAASA------NVIVSDAHDFDEQAQAVRDTADFADRADLI 116 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 202 VVDSV A GD G A R ++ + L ++ + ++ NQ+ + Sbjct: 117 VVDSVTGFYRLA----RGGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVFTDVD- 171 Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQ 262 + GG+ L + L + R G R + K++ + A+FQ Sbjct: 172 NDSDRARPLGGHTLAHWTGTVLRLDRF---------RGGTRRATLEKHRAKPDGEHAQFQ 222 Query: 263 ILYGEGIN 270 I G GI+ Sbjct: 223 ITDG-GID 229 >UniRef50_A9FIX3 RecA recombinase homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIX3_SORC5 Length = 269 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 12/118 (10%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK-TTLTLQVIAAAQRE---------- 87 +T+ G ++ AL GGLP G +VE+ P G+ T+L L A+AQ E Sbjct: 30 KTLPLGLREINDALPEGGLPRGGVVELAAPRGLGRSTSLALSACASAQAEARLRGTSATA 89 Query: 88 GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 G CA+ID +L + VD+ LL +P E ++ +A S A V+V+D Sbjct: 90 GAWCAWIDPSGSLYAPAVARAQVDLSRLLVVRPPP-EVLAKVAVRMAMSRAFAVLVID 146 >UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickettsiales RepID=RADA_RICBR Length = 448 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 IST LD LG GGL +G + I G GK+TL LQ++A + C +I E +L Sbjct: 66 ISTPIGELDRVLG-GGLVLGSAILIGGDPGIGKSTLLLQLVAGSFASKVKCLYITGEESL 124 Query: 101 DPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 153 D I R L +D+ N + I A G +D++V+DS+ + + Sbjct: 125 DQIKLRALRLDLVNDKTNILAANNLEDIIASLEANKGNIDLVVIDSIQTIATR 177 >UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacteria RepID=A1SXY3_PSYIN Length = 470 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 20/162 (12%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 +STG LD LG GG+ +G +V I G SGKTTL L +A + + ++ AE +L Sbjct: 82 VSTGLSELDRVLG-GGITLGSVVLISGDPGSGKTTL-LTKVAEVMSQSMSTLYVTAEESL 139 Query: 101 DPIYAR-----KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 155 R KL + DN L S D E ++ C V ++ DS+ A + Sbjct: 140 SQWAKRGIERLKLNFNEDNFLLSDTDCIEDIVDQC----LENNVRFLIADSIQAFESN-Q 194 Query: 156 IEGEIGD-SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 EG G + + + A+++++ KQ LI + Q+ Sbjct: 195 AEGTAGGVTQVKICAKILNRL-------CKQHGITLILVGQV 229 >UniRef50_Q977U1 RecA-like protein (Fragment) n=2 Tax=Thermoprotei RepID=Q977U1_SULAC Length = 198 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 10/97 (10%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 +STG D L GG+P G V + G +GKT +L +A +EG C ++ E + Sbjct: 4 LSTGIYEFD-KLIEGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTEESR 62 Query: 101 DPIY--ARKLGVDIDNLLCSQPDTGEQALEICDALAR 135 D I A++ G D + L ++ L I DAL + Sbjct: 63 DSIVKQAKQFGWDFEEHL-------DKKLIIIDALMK 92 >UniRef50_B5IFC8 Putative uncharacterized protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IFC8_9EURY Length = 243 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 36/160 (22%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 91 E +M V TG LD ALG GG P I + GP GKT L++Q +A R G+TC Sbjct: 10 ECPTMTVSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSVQWLAEGVRNGETC 68 Query: 92 AFIDA-----------------EHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC---- 130 +I + A+D I+ + + +L+ P T E+ L+I Sbjct: 69 VYISTTLPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLI---PFTKEKILKIFHKVM 125 Query: 131 -----DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 165 + L +D +V+DS+ IE +GD M Sbjct: 126 PDFFDEQLNLKKPIDRLVLDSLTT------IEKIVGDISM 159 >UniRef50_A3ZPQ5 Putative uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPQ5_9PLAN Length = 237 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG-PESSGKTTLTLQVIAAAQREGK 89 G R+ D+ STGS +LD L GG+ G ++E G +SG TL L + Sbjct: 25 GGRRAADI--TSTGSTALDELLPCGGVRRGGMIEWIGCTPASGAGTLALIAARHVCASNQ 82 Query: 90 TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 T ID+ + P LG+D+ +L +P T ++A C+ R A+ ++ D Sbjct: 83 TFLVIDSRRQISPAALANLGLDLAKILIVRPQTKQEAWWACEEALRCKAIGLVWAD 138 >UniRef50_B5JLQ1 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLQ1_9BACT Length = 271 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 24 KGSIMRLGEDRSMDVET--ISTGSLSLDIALGAGGLPMGRIVEIY-GPESSGKTTLTLQV 80 +G + LG +R+ E+ + TG SLD AL GGL G + EI S G L L + Sbjct: 58 EGRLGELGVERAAPAESEILGTGVDSLDGAL-DGGLRSGLLTEIAESGASCGGQALLLHL 116 Query: 81 IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 140 +A +RE + A +D DP A G +++LL ++ + +A+ + DAL R + Sbjct: 117 LAGTRREQRFAALVDGADGFDPGSAS--GELLEHLLWARCRSAGEAMRVADALLRDENLG 174 Query: 141 VIVVD 145 +++VD Sbjct: 175 MVLVD 179 >UniRef50_UPI0000D55904 PREDICTED: similar to Dmc1 homolog n=1 Tax=Tribolium castaneum RepID=UPI0000D55904 Length = 356 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 36/250 (14%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFID 95 ISTGS +LD LG GG+ I +++G SGKT + + Q G FID Sbjct: 113 ISTGSANLDKLLG-GGVESMSITQVFGEAGSGKTQIAHTLCVTTQIPTEDYSGGKVMFID 171 Query: 96 AEHALDP----IYARKLGVDID----NLLCSQPDTGEQALEICDALA-----RSGAVDVI 142 E + P AR+ + D N+L + E +I +A +G ++ Sbjct: 172 TERSFRPNRIRQIARRFHLSEDSVLQNILYIRAYNSEHQYQILKNVAVKFHEDTGVFKLL 231 Query: 143 VVDSVAALTPKAEI-EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 +VDS+ AL + G + + LA M ++K++ ++ N + NQ+ + Sbjct: 232 IVDSIIALFRNDFMGRGVLLNRQQKLAETM--SLLKKIS---EEYNVAVFITNQVTTSMN 286 Query: 202 VMF-----GNPETTTGGNALKFYASVRLDIR------RIGAVKEGENVVGSETRVKVVKN 250 F G+ GGN L ++ R+ +R RI + + + E + Sbjct: 287 NKFPLLTIGDDVKPVGGNILAHSSTTRVALRKLTGNVRIAKIHDSPELAEQEEAFTITNG 346 Query: 251 KIAAPFKQAE 260 + P AE Sbjct: 347 GVQDPILDAE 356 >UniRef50_C5KD76 Meiotic recombination protein DMC1, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KD76_9ALVE Length = 259 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV-IAAAQREGKTCAFIDAE 97 + +STG SLD A GGLP+ ++VE+YGP SGKT + + + +A EG+ F D+E Sbjct: 12 QYVSTGMPSLD-AFLRGGLPVAQLVELYGPAGSGKTQVLMSIAVAVLAGEGRVFWF-DSE 69 Query: 98 HALDP 102 L P Sbjct: 70 RTLHP 74 >UniRef50_A7ATP8 Rad51 protein, putative n=1 Tax=Babesia bovis RepID=A7ATP8_BABBO Length = 346 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 113/258 (43%), Gaps = 48/258 (18%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKTCAF 93 +TGS +LD AL GG+ G I EI G S+GKT L + +Q EGK C + Sbjct: 105 FTTGSTALD-ALLQGGIESGSITEIIGDFSTGKTQLCHTLAITSQLPIEQNGGEGK-CLW 162 Query: 94 IDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGA---VDVI 142 ID +++ P A + G+ + N++ + EQ ++ A A ++ Sbjct: 163 IDTQNSFRPERLGPIANRFGLSHAECVANIVYVKVSNTEQQFDMLVEAAHYMAQSRFAML 222 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMS-----QAMRKLAGNLKQSNTLLIFINQIR 197 +VDS AL + + G G+ LAAR MS +A+++LA ++ NQ+ Sbjct: 223 IVDSATALY-RTDYTGR-GE----LAARQMSLGKYFRALKRLA---DIYGVAVVVTNQVM 273 Query: 198 MKI----GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 253 ++ M GN + GG+ + RL +R+ +RV V N + Sbjct: 274 ARVDNMSSFMGGNDKVPVGGHVVAQNTQTRLFLRK----------ARGNSRVCKVYNSPS 323 Query: 254 APFKQAEFQILYGEGINF 271 P +A F I G +++ Sbjct: 324 LPEGEAVFAIAEGGIVDY 341 >UniRef50_C5A470 RecA family AAA ATPase n=2 Tax=Thermococcus RepID=C5A470_THEGJ Length = 449 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 6/135 (4%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 +R E E I TG D LG GG G I I GP SGKT L + + ++ Sbjct: 226 LRFAERNIQTKERIKTGIPKFDELLG-GGFYKGSINLIAGPTGSGKTIFALTIASNMAKQ 284 Query: 88 GKTCAFIDAEHALDPIY--ARKLGVDIDNLLCS---QPDTGEQALEICDALARSGAVDVI 142 G ++ E AL + + LG+D D + S + T Q + L R + +++ Sbjct: 285 GFRVLYMTFEEALGALLGTTKNLGLDGDFKVISLIPEAMTPIQYYALIKRLLRENSSEIL 344 Query: 143 VVDSVAALTPKAEIE 157 +DS++A+ E E Sbjct: 345 FIDSISAMQSHMEEE 359 >UniRef50_C6A0N1 DNA repair and recombination protein radB n=9 Tax=Thermococcaceae RepID=RADB_THESM Length = 228 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 4/62 (6%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 ++TGS +LD LG GG+ G + ++YGP ++GKTTL +Q+ EGK A+ID E Sbjct: 2 LTTGSKNLDALLG-GGIDKGILTQVYGPFATGKTTLAMQI--GLLNEGK-VAYIDTEGGF 57 Query: 101 DP 102 P Sbjct: 58 SP 59 >UniRef50_D1H4V0 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H4V0_VITVI Length = 1093 Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA-AAQR 86 M L ED + + +STG +D+ L GGL +G + E+ GP S+GKT + L+V + A R Sbjct: 128 MELLEDAQQNKQVLSTGCEGIDMLL-HGGLCVGHLTELVGPSSAGKTQICLKVASGVATR 186 Query: 87 EGKTCAFIDAEHALDPI 103 FID ++ P+ Sbjct: 187 YMGGVVFIDTGNSFSPL 203 >UniRef50_B4SN90 Non-specific serine/threonine protein kinase n=2 Tax=Proteobacteria RepID=B4SN90_STRM5 Length = 498 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 43 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 94 TG LD LG GGLP R+ + GP SGKTTL+LQ + R G+ C +I Sbjct: 9 TGVEGLDSILG-GGLPQARLYLLEGPPGSGKTTLSLQFLLEGLRRGERCLYI 59 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 +S+G +D LG G L G + GP SGKT + LQ + AA G+ C + + + Sbjct: 250 VSSGVDEIDRLLGGGPL-RGTSTLLTGPAGSGKTNVALQYVWAACERGERCCIFEFDERI 308 Query: 101 DPIYARKLGVDID 113 + AR +DID Sbjct: 309 GTLLARASALDID 321 >UniRef50_A3LTU6 Predicted protein n=1 Tax=Pichia stipitis RepID=A3LTU6_PICST Length = 541 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 23/152 (15%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REG--KTCAFIDAE 97 ISTG +LD LG GG+P G I EI+G GK+ + Q+ Q EG K C I E Sbjct: 88 ISTGLHTLDSDLG-GGIPTGEITEIFGSSGCGKSHMLAQLAMECQLNEGDCKECIHIGTE 146 Query: 98 --------HALDPIYARK-LGVDIDN---LLCSQPDTGEQALEICDAL---ARSGAVDVI 142 H + Y K V +DN + C ++ + + + +++G V ++ Sbjct: 147 SFLETKRLHQIQQSYESKGSTVSLDNISYIYCQDLESQDHIIYTQLPIHLESKAGKVRLL 206 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 174 V+DS+A + EG + +S M L R+ Q Sbjct: 207 VIDSIAQHLRR---EGSLSNS-MYLEERIKQQ 234 >UniRef50_C1MTK4 Rad51 DNA recombinase 1 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MTK4_9CHLO Length = 411 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 77/160 (48%), Gaps = 28/160 (17%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQV-----IAAAQREGKTCAF 93 ISTGS LD LG GG G + EIYG +GKT L TL V +A EGK + Sbjct: 110 ISTGSSKLDELLG-GGFESGSLTEIYGEFRTGKTQLCHTLAVTCQLPLAQGGAEGKAM-Y 167 Query: 94 IDAEHALDP----IYARKLGVD----IDNLLCSQPDTGEQALEICDALARSGA---VDVI 142 ID E P A + G+D +DN+ ++ E E+ A A A VI Sbjct: 168 IDTEGTFRPQRLIAIAERFGMDSAAVLDNVAYAKAHNCEHQSELLVAAAGMMAEARFGVI 227 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMS--QAMRKLA 180 +VDSV L + E EG G+ L+AR M + +R+LA Sbjct: 228 IVDSVTNLY-RTEYEGR-GE----LSARQMHLGKFLRQLA 261 >UniRef50_Q6BWA8 DEHA2B13024p n=2 Tax=Debaryomyces hansenii RepID=Q6BWA8_DEBHA Length = 569 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 9/91 (9%) Query: 29 RLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-- 85 R G++++ D I TG +LD L GG+P+G I EI+G GK+ L LQ+ Q Sbjct: 84 RFGKEQTGDKCHFIPTGLEALDRQLN-GGIPLGEITEIFGASGCGKSQLLLQLCIYTQLV 142 Query: 86 --REGKTCAFIDAEHALDPIYARKLGVDIDN 114 E C +I E P+ R+L ID+ Sbjct: 143 GDPENNQCIYISTE---SPLETRRLHDMIDH 170 >UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B2S0C8_BORHD Length = 466 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 22/215 (10%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 K I L + + +D TG D LGAG + +G + I G GK+T LQ+ + Sbjct: 53 KSEIFSLKDFKQVDNVRYLTGIEEFDRVLGAG-IVIGSAILISGEPGIGKSTFLLQISSI 111 Query: 84 AQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGA--- 138 +GK ++ E ++ I R +L + D L+ ++ D DAL A Sbjct: 112 LSLDGKNVLYLAGEESIPQIKLRANRLKISSDILITNEIDV--------DALIEMLANIE 163 Query: 139 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 198 +D +VVDS+ L + E++G +G G+A + + KL K N L + + Sbjct: 164 LDFMVVDSIQTLNSR-EVQGSLG----GVA--QLKHCVYKLVEWAKGKNITLCLVGHV-T 215 Query: 199 KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 233 K G++ G +++ ++ + +R + A K Sbjct: 216 KDGILAGPKIIEHMVDSVFYFEEAKKSLRMLRATK 250 >UniRef50_B9WC87 DNA repair protein, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9WC87_CANDC Length = 512 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA--F 93 +D E ISTG S+D LG GG+P+G I EI+G GK+ Q+++ ++E T + Sbjct: 80 LDSEFISTGLPSIDRELG-GGIPIGEITEIFGASGCGKSHFLFQLLSNCRKEFPTSKNIY 138 Query: 94 IDAEHALD 101 I E L+ Sbjct: 139 ISTESFLE 146 >UniRef50_B5I9Z9 KaiC domain protein n=3 Tax=Aciduliprofundum boonei T469 RepID=B5I9Z9_9EURY Length = 227 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I TG LD L GG+P G V + G +GKTT +Q I G+ C F+ E Sbjct: 3 IKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEEDE 61 Query: 101 DPIY--ARKLGVDIDNLLCSQ-------PDTGEQALEICDA----LARSGAVDVIVVDSV 147 D + A K G D L SQ P+ + ++E ++ L + I VDS+ Sbjct: 62 DSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDSI 121 Query: 148 AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 207 + +T M + + + KLA ++K+S +F ++ K NP Sbjct: 122 SLIT------------MMYDSIDEKRKVVFKLAKSIKESGATAVFTAEVDPK------NP 163 Query: 208 ETTTGG 213 + + G Sbjct: 164 KVSRDG 169 >UniRef50_P25453 Meiotic recombination protein DMC1 n=38 Tax=Saccharomyceta RepID=DMC1_YEAST Length = 334 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 30/214 (14%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGKT 90 V ++STGS LD LG G + M I E++G GKT ++ + Q EGK Sbjct: 93 VYSLSTGSKQLDSILGGGIMTMS-ITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKV 151 Query: 91 CAFIDAEHALDPIYARKL--GVDID------NLLCSQPDTGEQALEICDALAR---SGAV 139 A+ID E P +++ G ++D N+ ++ E +E+ + L SG Sbjct: 152 -AYIDTEGTFRPERIKQIAEGYELDPESCLANVSYARALNSEHQMELVEQLGEELSSGDY 210 Query: 140 DVIVVDSVAA-LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 198 +IVVDS+ A GE+ + L +Q + KL ++ N + NQ++ Sbjct: 211 RLIVVDSIMANFRVDYCGRGELSERQQKL-----NQHLFKLNRLAEEFNVAVFLTNQVQS 265 Query: 199 KIG--VMFGNPE--TTTGGNALKFYASVRLDIRR 228 G +F + + GG+ L ++ R+ +R+ Sbjct: 266 DPGASALFASADGRKPIGGHVLAHASATRILLRK 299 >UniRef50_B6HD82 Pc20g01450 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HD82_PENCW Length = 390 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 31/189 (16%) Query: 39 ETISTGSLSLDIALG-------AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 91 I+TG LD L GG+ G + EI+GP +GKT+L L + A R+GK Sbjct: 37 HPIATGLARLDEVLNDLPDQPDQGGILRGHVTEIFGPPGAGKTSLALNIACNALRDGKVV 96 Query: 92 AFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR------SGAVDVIVVD 145 +ID L ++ +++D+ + + T + + LAR ++VVD Sbjct: 97 -WIDTGCPLPTPRLEEMSINLDDFIYFRAHTLAHLIAL---LARPPKGFPPSGTSLLVVD 152 Query: 146 SV----AALTPKAE------IEGEIGD-SHMGLAARMMSQAMRKLAGNLKQ---SNTLLI 191 SV +A P A+ EG+I D +H+ +L +L + N ++ Sbjct: 153 SVSNLFSAYFPSAQELKDQLAEGKITDKAHLQWLINRRWNIASELGTHLARVAARNIAVV 212 Query: 192 FINQIRMKI 200 INQ K+ Sbjct: 213 AINQSHTKV 221 >UniRef50_B9LPC6 DNA repair and recombination protein RadB n=7 Tax=Halobacteriaceae RepID=B9LPC6_HALLT Length = 235 Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 96/255 (37%), Gaps = 61/255 (23%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 + I TG +D LG GG G + ++YGP ++GKT L L G +ID E Sbjct: 3 DPIPTGCRPVDDLLG-GGFERGVVTQVYGPPAAGKTNLALAAAVEVAAGGDRALYIDTE- 60 Query: 99 ALDPIYARKLGVDIDNL------LCSQPDTGEQALEICDALARSGAVDV----------- 141 G+ ID ++PD E EI L S A D Sbjct: 61 ----------GLSIDRFEQMAAGRANRPDVDETVEEIASRLVISEAYDFDDQREAVRDAE 110 Query: 142 --------IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 193 IV+DS +E GD+ G + R +++ + L ++ + ++ Sbjct: 111 ELAEEIELIVLDSATGFY---RLE-RAGDTEGGESLRKVAKQVTHLLSLARRHDIAVVIT 166 Query: 194 NQIRMKIGVMFGNPET----TTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVK 249 NQ+ F +P++ GGN L + GA+ + G RV + K Sbjct: 167 NQV-------FTDPDSDRDRALGGNTLNHWT---------GAIVRVDRFRGGNRRVTLEK 210 Query: 250 NKIAAPFKQAEFQIL 264 ++ A FQI+ Sbjct: 211 HRSKPAGDTATFQIV 225 >UniRef50_Q06609 DNA repair protein RAD51 homolog 1 n=385 Tax=Eukaryota RepID=RAD51_HUMAN Length = 339 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 39/254 (15%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----- 86 R ++ I+TGS LD L GG+ G I E++G +GKT + + Q Sbjct: 93 HQRRSEIIQITTGSKELDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRG 151 Query: 87 --EGKTCAFIDAEHALDP----IYARKLGVD----IDNLLCSQP---DTGEQALEICDAL 133 EGK +ID E P A + G+ +DN+ ++ D Q L A+ Sbjct: 152 GGEGKA-MYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAM 210 Query: 134 ARSGAVDVIVVDSVAAL-TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 192 +++VDS AL GE+ M LA + +R L + ++ Sbjct: 211 MVESRYALLIVDSATALYRTDYSGRGELSARQMHLA-----RFLRMLLRLADEFGVAVVI 265 Query: 193 INQIRMKI--GVMF-GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVK 249 NQ+ ++ MF +P+ GGN + ++ RL +R+ G ETR+ + Sbjct: 266 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK------GRG----ETRICKIY 315 Query: 250 NKIAAPFKQAEFQI 263 + P +A F I Sbjct: 316 DSPCLPEAEAMFAI 329 >UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B3QT35_CHLT3 Length = 459 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 11/125 (8%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 R E ++ E +ST LD LG GGL +V + G GK+TL LQ+ AA G Sbjct: 62 RFSELEDIEEERLSTRIEELDRVLG-GGLMTASVVLVGGEPGIGKSTLMLQL--AANLVG 118 Query: 89 KTCAFIDAEHALDPIYARKLGVDI---DNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 K+ +I AE +L I R ++I D LL S+ Q I D +A DV++VD Sbjct: 119 KSILYISAEESLHQIRNRAYRMNIRSEDILLVSET----QLENILDTVAAEKP-DVLIVD 173 Query: 146 SVAAL 150 S+ + Sbjct: 174 SIQTI 178 >UniRef50_Q2USE9 Predicted protein n=9 Tax=Trichocomaceae RepID=Q2USE9_ASPOR Length = 375 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 52 LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 + + G+P G + E+YGP +GKT+L L V +A R G +ID L Sbjct: 63 INSNGIPCGHVTEVYGPPGAGKTSLALSVATSALRNGDKVIWIDTGSPL 111 >UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD3_ELUMP Length = 454 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 8/123 (6%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 I+ L + +++ E TG LD LG GG+ G+++ + G GK+TL LQ AA+ Sbjct: 57 IINLSDTKTLREERELTGISELDRLLG-GGIVKGQLILLAGAPGIGKSTLMLQT-AASLS 114 Query: 87 EGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 +GK +I E +L+ I +R +LGV+ N+ + +E D + +V+++ Sbjct: 115 KGKKVLYISGEESLNQISSRALRLGVEGKNIFLLSETNMQNIIEALDKVKP----EVLII 170 Query: 145 DSV 147 DS+ Sbjct: 171 DSI 173 >UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q6C269_YARLI Length = 421 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 24/184 (13%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----- 87 +R ++ ISTG +D + GG P G + E+ G ++GK+ LQ+ Q Sbjct: 83 ERERPLDAISTGVRKIDTVMN-GGFPTGTLCEVAGESAAGKSHFLLQLCVNVQLARGEGG 141 Query: 88 -GKTCAFIDAEHALDPI-------YARKLGVD------IDNLLCSQPDTGEQALEI-CDA 132 GK FI E L+ + KLG D + + C + ++ + Sbjct: 142 LGKKAVFISTESGLETRRLVQMMDHVIKLGHDNISLHHVSFIACKDLEQQDRVFQYNLPN 201 Query: 133 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 192 L + ++V+DS+AA E+ + GD + + + + L G ++ N ++F Sbjct: 202 LLEDSSYGLVVIDSLAAHYRSEELTSK-GD--FSSRDKRLLRTLHHLKGLARKHNVAVVF 258 Query: 193 INQI 196 NQI Sbjct: 259 ANQI 262 >UniRef50_O29896 Putative uncharacterized protein n=2 Tax=Archaeoglobaceae RepID=O29896_ARCFU Length = 226 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 13/122 (10%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 + TG LD LG GG+P G IV + G +GKTTL L I + G+ C I + Sbjct: 2 LKTGIEGLDAILG-GGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDEDE 60 Query: 101 DPIY--ARKLGVDI----DNLLCSQPDTGE--QALEICDA----LARSGAVDVIVVDSVA 148 + I A+ +G+D+ D + + + E ++LE ++ + RS V ++VDS++ Sbjct: 61 ESIIGDAKSVGMDLTAFGDKVHIVRLEASEVKKSLEKLESDLPEIVRSLGVSRMLVDSIS 120 Query: 149 AL 150 L Sbjct: 121 VL 122 >UniRef50_Q2IEE4 Putative circadian clock protein, KaiC n=1 Tax=Anaeromyxobacter dehalogenans 2CP-C RepID=Q2IEE4_ANADE Length = 494 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 90 G+ +++ +E +STG LD LG GG+P I + G SGKT L LQ++ A R+GK Sbjct: 3 GDGQALRLERVSTGVEGLDQVLG-GGIPAKSITVVSGEPGSGKTVLALQMLFHAARQGKR 61 Query: 91 CAFI 94 + Sbjct: 62 SLYF 65 >UniRef50_Q467E5 Putative uncharacterized protein n=3 Tax=Methanosarcina RepID=Q467E5_METBF Length = 241 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 +E++STG LD L GG P G+ + + GP +GKT L + + + +EGK C + Sbjct: 1 MESLSTGIEGLD-TLMNGGFPKGKSILVTGPPGAGKTILGIHFLHRSCKEGKKCILVLTR 59 Query: 98 HALDPIYARKLGVDID 113 + I ++ + +D Sbjct: 60 ELTEDILSQSRSIHLD 75 >UniRef50_D2VU64 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VU64_NAEGR Length = 1023 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 103/258 (39%), Gaps = 64/258 (24%) Query: 51 ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT--CAFIDAEHALDPIYAR-K 107 L GG+P+ I EI G +SGK+ L ++ E C D E I+ R Sbjct: 798 TLFHGGIPLNMITEIVGATTSGKSEFCLSAVSDLLMEFDKFGCVIFDTEVKQANIFQRIY 857 Query: 108 LGVDIDNLLCSQPDTGEQALEICDALARSGA------------------VDVIVVDSVAA 149 + N S+ + E+ L+ C + + + + +IV+DS+A Sbjct: 858 FMMKNRNPDMSESEIEERILKKCTIIHVASSKELIDSLDNLEEFIFEKNIKLIVIDSLAT 917 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP-- 207 L+ K E +G+ G G R A L+ TLL +N+ + K+GV+ N Sbjct: 918 LSTK-EFQGKEG----GAFER---------ASILQTEATLLKQLNE-KFKVGVLVTNSLS 962 Query: 208 ---ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 E G N F + RL I +IG S+ + +VK+ IA Sbjct: 963 SSDEAQLGINWYHF-VNHRLKIYKIGE---------SKAIINIVKSSIA----------- 1001 Query: 265 YGEGINFYGELVDLGVKE 282 +N + + DLG++E Sbjct: 1002 --NNVNIHVNMADLGLQE 1017 >UniRef50_Q12U80 DNA repair and recombination protein radB n=8 Tax=Archaea RepID=RADB_METBU Length = 225 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 29/225 (12%) Query: 48 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--- 104 LD LG GG G + +I+G SGKT + LQ+ ++GK FID E + Sbjct: 15 LDELLG-GGFESGVVTQIFGEAGSGKTNICLQLAIECVKKGKKAIFIDTEGLSADRFKQI 73 Query: 105 ----ARKLGVDIDNLLCSQPDTGEQALEICDALAR--SGAVDVIVVDSVAALTPKAEIEG 158 ARK+ DI + +P + E+ + + V VI+VDS A + E++ Sbjct: 74 AGENARKIAQDI---IIFEPHSFEEQYSAVRETEKISTENVGVIIVDSATAYY-RFELDD 129 Query: 159 EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 218 E DS + R +S + L ++ + +++ NQ+ I N GG++L+ Sbjct: 130 E--DSSI-RTRRELSNQIGFLHSLARKRDIVVVITNQVYSDIK---SNSLKPIGGSSLEH 183 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 + + + + G GS R K+ K++ EF I Sbjct: 184 ISKTIIQLEKTGT--------GSR-RAKIWKHRSRPEGTTCEFTI 219 >UniRef50_B6K0Z0 Recombinational DNA repair protein Rhp55p n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K0Z0_SCHJY Length = 366 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 31/55 (56%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 S S +LD A G GL G+I EI GP SGKTTL L V A+A G +I+ Sbjct: 26 FSFNSNNLDNAFGGTGLKRGQISEICGPSGSGKTTLALNVAASALSAGYKVIWIE 80 >UniRef50_B6UY07 Spindle A (Fragment) n=6 Tax=melanogaster subgroup RepID=B6UY07_DROME Length = 211 Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-------EGK 89 DV +STGS LD LG GG+ G I EI+G GKT L + Q EGK Sbjct: 95 DVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGGEGK 153 Query: 90 TCAFIDAEHALDP 102 C +ID E+ P Sbjct: 154 -CMYIDTENTFRP 165 >UniRef50_Q0W872 Predicted RecA-family ATPase n=2 Tax=Euryarchaeota RepID=Q0W872_UNCMA Length = 241 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 +E +STG LD +GG P G+ V + G SGKT + + I ++GK C +I E Sbjct: 1 MERVSTGIDELD-QFISGGYPRGKSVLVTGTPGSGKTIIAIHFIYRGCQDGKKCVYIATE 59 Query: 98 HALDPIY--ARKLGVDI 112 L+ I A +G DI Sbjct: 60 EELEDILHQAESIGRDI 76 >UniRef50_B7GAG1 Rad51 DNA recombination/repair protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAG1_PHATR Length = 456 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 + TG LD AL GG+ +G I E+ GP GKT L +Q+ A R + C ++D E L Sbjct: 160 LPTGLEPLDQAL-RGGVRVGTITELVGPAGVGKTQLAMQLCIMASRYAQGCVYVDTEKKL 218 Query: 101 DPIYARKLGVDIDNLLCSQPDTGEQ 125 R++ + + + PDT Sbjct: 219 SVARLREIALQRSSRV---PDTNTH 240 >UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales RepID=B9KHP2_ANAMF Length = 456 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 16/162 (9%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 V + G+ LD LG GG+ G + I G GK+TL LQV A+ + +C ++ E Sbjct: 71 VHRLCVGNDELDRVLG-GGIVAGSSILIGGEPGIGKSTLMLQVFASLAGQSHSCLYVSGE 129 Query: 98 HALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD---VIVVDSVAALTPKA 154 ++ I AR +++ S+P A ++ + D +V+DS+ + + Sbjct: 130 ESVAQIRARATRLNV-----SEPQIKLVATSSLSSVLNAACADNFAFLVIDSIQTMHDE- 183 Query: 155 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 EI G L RM + + LA KQ N L + QI Sbjct: 184 EIPSSPGTV---LQVRMCAHKLIMLA---KQRNIGLFLLGQI 219 >UniRef50_C1EGX8 Rad51 DNA recombinase 2 n=2 Tax=Micromonas RepID=C1EGX8_9CHLO Length = 440 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 52/190 (27%) Query: 48 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC-------AFIDAEH-- 98 LD ALG GG+P G I E+ GP +GKT + L +A A K C FID E Sbjct: 113 LDDALG-GGVPTGSISELVGPAGAGKTQMCL-TLACACAAPKRCGGLESGVVFIDTEQRF 170 Query: 99 ---------------ALDPIYA-------RKLGVDIDNLLCSQPDTGEQALEICDALARS 136 L P +A R+L +L P T + L+ + L + Sbjct: 171 SSQRLAEIARAKFPETLSPAHAPDAASAERELESLTSRILVLTPSTLSEMLQRLNGLEEA 230 Query: 137 ---GAVDVIVVDSVAA----------LTPKAEIEGEIGDS------HMGLAARMMSQAMR 177 V +++VDSVAA LT + E+ G+I + +G+AA + +Q Sbjct: 231 LIDRGVRLLIVDSVAALARAQFGRGQLTQRQELLGQIASALKQLAERLGMAAFVTNQVTT 290 Query: 178 KLAGNLKQSN 187 ++ ++ ++ Sbjct: 291 RVGARVRHAH 300 >UniRef50_A5UKT8 DNA repair and recombination protein radB n=4 Tax=Methanobrevibacter RepID=RADB_METS3 Length = 234 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 17/184 (9%) Query: 55 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE-----HALDPIYARKLG 109 GG+ G + +I+GP SGK+ ++L + ++GK ++D E + + I Sbjct: 25 GGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYVDTEGGISINRIKQIAGEDFP 84 Query: 110 VDIDNLLCSQPDT---GEQALEICDALARSGA--VDVIVVDSVAALTPKAEIEGEIGDSH 164 ++N++ +P + + L+ + R VD+ V+DS AL + D Sbjct: 85 KIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLCVLDSAVALY-------RVDDMK 137 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 224 + + + M LA + + ++ NQI + GG L++++ + Sbjct: 138 SSRLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDDDNKDVVKAVGGTILQYWSKTII 197 Query: 225 DIRR 228 + R Sbjct: 198 QLER 201 >UniRef50_B2WMH4 Putative uncharacterized protein n=2 Tax=Pleosporineae RepID=B2WMH4_PYRTR Length = 460 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 9/66 (13%) Query: 40 TISTGSLSLDIALG---------AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 90 T+STG LD L +GG G++ E++GP GKT +Q +A REG+ Sbjct: 34 TVSTGITQLDKVLSPLSLPGHDVSGGYTRGKVTEVFGPSGVGKTAFGIQAAVSALREGQQ 93 Query: 91 CAFIDA 96 ++DA Sbjct: 94 VIWVDA 99 >UniRef50_Q3JBH0 KaiC n=3 Tax=Chromatiales RepID=Q3JBH0_NITOC Length = 482 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 18/134 (13%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 89 LGED STG LD LG GGL G I I GP +GK+TL +A A +G+ Sbjct: 236 LGEDERW---RWSTGIEKLDKILG-GGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGR 291 Query: 90 TCAFIDAEHALDPIYAR--KLGVDIDNLL------CSQPD-----TGEQALEICDALARS 136 A E +D + R L +D+ N L Q + T E A + + Sbjct: 292 KAAIYLFEEEIDALLHRASSLSIDLKNPLREGQIKLEQVEPLRYLTDEFATLVSQEVEEE 351 Query: 137 GAVDVIVVDSVAAL 150 G V++IV+DS+A Sbjct: 352 G-VELIVLDSIAGF 364 >UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickettsia RepID=RADA_RICFE Length = 446 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%) Query: 48 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 107 L+ LG GGL +G + I G GK+TL LQ+ A+ C +I E +LD I R Sbjct: 73 LNRVLG-GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEESLDQIKLRA 131 Query: 108 LGVDIDNLLCSQPDTGEQALE--ICDALARSGAVDVIVVDSVAALTPK 153 + +++ N + LE I A +D++V+DS+ +T K Sbjct: 132 IRLNLTNY--NTDILAATNLEDIIASIEANKNNIDLVVIDSIQTITTK 177 >UniRef50_A8N2F5 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N2F5_COPC7 Length = 249 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 46/216 (21%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL--TLQVIAAAQRE-- 87 +D+ V ISTGS +D LG GG+ I E+YG +GKT L T+ V+A E Sbjct: 28 QDKRKRVLVISTGSKLVDGILG-GGVMSQSITEVYGEYRTGKTQLAHTMSVVAQLPPEYG 86 Query: 88 ---GKTCAFIDAEHALDPIYAR----KLGVD----IDNLLCSQPDTGEQALEICDALARS 136 GK A+ID E P R + GVD ++N+L ++ E +E+ + + Sbjct: 87 GAAGK-VAYIDTEGTFRPDRIRAIADRFGVDGTMALENILYARAFNSEHQMELINECSAR 145 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 A D D + +++Q + KL ++ N ++ NQ+ Sbjct: 146 FAED--------------------KDFRL-----LLAQMLSKLTKLSEEFNIAVLMTNQV 180 Query: 197 RMKIGVMF----GNPETTTGGNALKFYASVRLDIRR 228 + G G GG+ L ++ R+ +R+ Sbjct: 181 QSDPGATMTFVAGGALKPIGGHILSHASATRIFLRK 216 >UniRef50_Q386Q5 Recombinase Rad51, putative n=2 Tax=Trypanosoma brucei RepID=Q386Q5_9TRYP Length = 507 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 7/77 (9%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT------C 91 +E ++T SLDI LG GGL +G + EI GP GKT L++Q+ + C Sbjct: 103 IENVTTLCRSLDILLG-GGLQVGTLTEICGPPGVGKTQLSMQLAVNCVLPKELGGLQGGC 161 Query: 92 AFIDAEHALDPIYARKL 108 FID E + P R++ Sbjct: 162 LFIDTEGSFLPERFREI 178 >UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312A2 Length = 466 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 10/138 (7%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 +RLGE ++ +VE + TG LD LG G +P G +V I G GK+TLT +A Sbjct: 68 VRLGEVQASEVERLPTGIGELDRVLGGGIVP-GSLVLIGGSPGIGKSTLTTMAVANLTGA 126 Query: 88 GKTCAFIDAEHALDPIYARK---LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 G+ ++ AE + I R G ++ + ++ D G + L R DV V+ Sbjct: 127 GRKTLYVSAEESAAQIKLRAERLPGAALEIPVIAETDLG----AVLATLERERP-DVCVI 181 Query: 145 DSVAALTPKAEIEGEIGD 162 DSV L AE+ G G Sbjct: 182 DSVQTLH-AAELTGAPGS 198 >UniRef50_C5M7H8 Putative uncharacterized protein n=2 Tax=Candida RepID=C5M7H8_CANTT Length = 518 Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 66/130 (50%), Gaps = 16/130 (12%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---- 88 ++ ++ E I+TG ++D LG GG+P+G + E++G GK+ Q++A +++ Sbjct: 77 EKLLESEFINTGLPNIDTELG-GGIPLGEVTEVFGASGCGKSHFLFQLLANCRKQYPMSE 135 Query: 89 ----KTCAFIDAEHALDPIYARKLGVDIDN---LLCSQPDTGEQALEICDALARS---GA 138 T +F++ + D + + K D+D+ + C ++ + L L S G Sbjct: 136 NVHISTESFLETKRLKDFLGSNKKS-DLDSISYIHCQDLESQDHILYTQLPLKLSQNNGK 194 Query: 139 VDVIVVDSVA 148 ++V+DS+A Sbjct: 195 TKLVVIDSIA 204 >UniRef50_Q4CZQ5 DNA repair protein, putative n=2 Tax=Trypanosoma cruzi RepID=Q4CZQ5_TRYCR Length = 393 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 STGS ++D L GG+ G ++EI+GP ++GK+ L Q++AA G Sbjct: 43 FSTGSAAIDRLLPDGGVACGTVLEIFGPPAAGKSHLVQQMVAAFAARG 90 >UniRef50_Q9LPN8 F18K10.22 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LPN8_ARATH Length = 135 Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 26/34 (76%) Query: 91 CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 CA++DAE+A+DP A +GV+ + LL S+PD+ E Sbjct: 83 CAYLDAENAMDPSLAESIGVNTEELLISRPDSAE 116 >UniRef50_Q5V5J9 RecA/helicase-like n=1 Tax=Haloarcula marismortui RepID=Q5V5J9_HALMA Length = 496 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 +S+G LD +L GGL GR+ + GP +GKT L Q + A G FI AE + Sbjct: 11 LSSGISGLD-SLLRGGLVEGRLYLVIGPPGTGKTLLGTQFLEAGLEAGDDVLFIHAEESA 69 Query: 101 DPIYAR--KLGVDIDN--LLCSQPDT 122 + A +LG+DI N L PD+ Sbjct: 70 SDLRANTAELGIDISNATFLDVGPDS 95 >UniRef50_A4R1B5 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4R1B5_MAGGR Length = 548 Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 35/185 (18%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFI 94 TIST LD ALG GG+P G + EI G +GKT L ++ A Q G+ +I Sbjct: 136 TISTLDPELDAALG-GGIPTGYVTEITGESGAGKTQFLLSLLLAVQLPPPHGLGRKAMYI 194 Query: 95 DAEHAL-----------DP-IYARKLGVDIDNLLCSQP--DTGEQ----ALEICDALARS 136 E AL +P + + +D++L QP D Q + ++ AR Sbjct: 195 PTEAALSTRRVAQMLAANPLLLSASPRPSLDSILSLQPLGDIEAQDHILSFQVPLEAARR 254 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR-----MMSQAMRKLAGNLKQSNTLLI 191 V +I++DSVAA +AE + G GLAAR + +R LA +L N ++ Sbjct: 255 N-VGLIILDSVAANF-RAEYDAA-GSRSTGLAARSAELVRLGMQLRNLARSL---NLAVV 308 Query: 192 FINQI 196 NQ+ Sbjct: 309 VANQV 313 >UniRef50_Q12XV7 KaiC domain-containing protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12XV7_METBU Length = 301 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 14/148 (9%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 ++ +STG LD L GG+P G V + GP +GKTTL +Q + + + C F E Sbjct: 59 IKRVSTGVAGLDDML-EGGVPKGSSVIVTGPPGTGKTTLCMQFLMEGVKADEKCLFFSFE 117 Query: 98 HALDPI------YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 151 + + + LG ID+ E + + IV DS+ T Sbjct: 118 ERIPQLIQHFMRFGWDLGSHIDDGYLEIFGMSMLTFEEIGEIIETYKPQRIVFDSLNVFT 177 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKL 179 E I + R + + ++KL Sbjct: 178 DPEEFRKSI-------SWRSLHKLLKKL 198 >UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquificales RepID=RADA_AQUAE Length = 444 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 8/111 (7%) Query: 42 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 101 +TG SLD ALG GGL G+++ I G GK+TL LQ I+ GK ++ E + Sbjct: 67 TTGFESLDNALG-GGLVKGQVILIAGEPGIGKSTLLLQ-ISDRVANGKKVLYVSGEESGT 124 Query: 102 PI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 I A++LG++ +NLL E+ L+ + S ++V+DSV + Sbjct: 125 QIALRAKRLGINNENLLVYPEVNLEKILQTLEKEKPS----LLVLDSVQTI 171 >UniRef50_A9A126 RecA/RadA recombinase-like protein n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A126_NITMS Length = 217 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 ISTG LD +L GG+P G IV+I+G +GKT L LQ+ + ++G + D Sbjct: 2 ISTGLEKLDKSL-FGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGHVLYFDTTGGF 60 Query: 101 DP 102 P Sbjct: 61 RP 62 >UniRef50_UPI0001C1618D hypothetical protein CRD_02017 n=1 Tax=Raphidiopsis brookii D9 RepID=UPI0001C1618D Length = 72 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%) Query: 284 LIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 328 LI K GAWYS+ GE I QG+ NA +L++ + A++I+++VR L Sbjct: 2 LIRK-GAWYSHNGENISQGRDNAIKYLEEKSDFAEKIKEQVRAKL 45 >UniRef50_A1WXU4 SOS cell division inhibitor SulA n=1 Tax=Halorhodospira halophila SL1 RepID=A1WXU4_HALHL Length = 278 Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 7/107 (6%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESS-GKTTLTLQVIAAAQREGKTCAFIDAEHA 99 + TG LD AL GG P+G + EI+ + + G+ L L +AA R + A + + Sbjct: 30 LGTGYPELDAALPDGGWPLGTVTEIFHQQPAIGELQLILPSLAALSRRRQWLALVAPPYI 89 Query: 100 LDPIYARKL---GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 YA L GVD+ +L P E L + RSG +V Sbjct: 90 ---PYAPGLAHAGVDLSRVLLIHPRAHEDHLWAIEQALRSGTCGAVV 133 >UniRef50_B2B0Y8 Predicted CDS Pa_3_7770 n=1 Tax=Podospora anserina RepID=B2B0Y8_PODAN Length = 500 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 31/185 (16%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFI 94 TIST LD+ALG GG+P G I EI G ++GKT L ++ A Q + +I Sbjct: 116 TISTLDPHLDLALG-GGIPTGHITEITGESAAGKTQFLLTLLLAVQLPPPHGLSRPALYI 174 Query: 95 DAEHAL-----------DPIYA---RKLGVDIDNLL-CSQPDTGEQ----ALEICDALAR 135 E L +P+++ R +D ++ + PD Q + +AR Sbjct: 175 STEAPLSTRRLSQMITENPLFSTLPRSARPTLDKIISTTTPDLESQDHILTYQAPVEIAR 234 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK----QSNTLLI 191 V ++++DSVAA +AE E +S++ + + KL +LK + N ++ Sbjct: 235 RN-VGLLIIDSVAANY-RAEFERPTPNSNLSSNMGARTNELIKLGMHLKDLAEKYNLAVV 292 Query: 192 FINQI 196 NQ+ Sbjct: 293 VSNQV 297 >UniRef50_C6A5H8 ATPase, RecA superfamily n=4 Tax=Thermococcus RepID=C6A5H8_THESM Length = 241 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 32 EDRSMDVET-ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 90 E++S+ + + +STG LD +G G +P GR+ + GP SGKTTL +Q + + G+ Sbjct: 7 ENKSLPIYSRVSTGVKGLDNLIGGGLIP-GRVYVVTGPPGSGKTTLGIQFLVEGAKNGEK 65 Query: 91 CAFI 94 +I Sbjct: 66 GIYI 69 >UniRef50_Q67LV6 Conserved domain protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67LV6_SYMTH Length = 466 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 21/112 (18%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 +STG LD LG G P + + G +GKTTL +Q + R G+ A+ E Sbjct: 5 LSTGVEGLDSVLGGGLFPASATL-VRGAPGTGKTTLGIQFLCEGARRGEGGAYFTFEEFP 63 Query: 101 DPIY--ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 + IY AR+LG D+ QALE ++G + VI +D A L Sbjct: 64 EQIYRDARELGFDL------------QALE------QAGKLQVITLDPGAFL 97 >UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7W6_9DELT Length = 447 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 25 GSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 84 G + LG + D T LD LG GGL G V + G GK+TL LQ+ A Sbjct: 53 GVPVPLGSHPNEDFRPFPTAFSGLDRVLG-GGLTPGGAVLLGGEPGIGKSTLLLQLAGLA 111 Query: 85 QREGKTCAFIDAEHALDPIYAR--KLGVDIDNLL-CSQPDTGEQALEICDALARSGAVDV 141 G+ ++ AE +L + AR +LGV + LL S D G D L + A D+ Sbjct: 112 AVAGRRVVYLSAEESLPQLKARAERLGVLHEGLLAASTTDAGAAV----DVLGATPAPDL 167 Query: 142 IVVDSVAALTPKAEIEGEIG 161 ++VDSV + A IEG G Sbjct: 168 VIVDSVQTMH-MAGIEGAAG 186 >UniRef50_A6G591 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G591_9DELT Length = 369 Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 39 ETISTGS------LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 92 E ++TG+ LS D GGLP G + + GP GKT TL +A + G CA Sbjct: 105 EPLATGTVLDYLCLSEDSKTSLGGLPKGCTMALVGPPGKGKTRTTLGTLARVAQTGIKCA 164 Query: 93 FIDAEHAL 100 F+ AE Sbjct: 165 FVVAEEGF 172 >UniRef50_C3XRY9 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XRY9_BRAFL Length = 1114 Score = 41.6 bits (96), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 3/100 (3%) Query: 65 IYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 121 + GP +GKT + +Q+I+ E +T + AL+ ++ + + +DID + Sbjct: 725 VVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLG 784 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 161 GE+ALE +R G V+ ++ + L A ++ +G Sbjct: 785 HGEEALETEKDFSRYGRVNFVLARRLELLKEVARLQESLG 824 >UniRef50_B6YWB4 ATPase n=3 Tax=Thermococcus RepID=B6YWB4_THEON Length = 234 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 +E ISTG LD L G +P GR + G +GKTTLT+Q + + G+ ++ E Sbjct: 1 MERISTGIKGLDKMLEGGLIP-GRTYLVKGGPGTGKTTLTIQFLTEGVKNGEDVLYVTLE 59 Query: 98 HALDPIY--ARKLGVDIDN 114 +L + KLG ++D+ Sbjct: 60 ESLKTLKEDMSKLGFNLDD 78 >UniRef50_A8IRH2 RecA-like protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8IRH2_CHLRE Length = 238 Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 G + Q+ G ++L E D ++TGS ++D L AGGL G +VE+ G +SGKT Sbjct: 77 GLLAPQWSTG--LQLVERLHTDTGLLTTGSNTID-GLLAGGLRQGMVVEVAGETASGKTQ 133 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDP 102 L L AAA +G F+D + P Sbjct: 134 LCLLAAAAAALQGHEVMFVDTTGSFKP 160 >UniRef50_B5IA62 DNA repair and recombination protein RadB n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IA62_9EURY Length = 234 Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 29/207 (14%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 V+ I +G S+D +L GG G I E+YG SGKT + L +EG +ID E Sbjct: 8 VDKIKSGCESID-SLLNGGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYIDTE 66 Query: 98 HALDPIYARKLGVDID---NLLCSQPDTGEQALEI----CDALARSGAVDVIVVDSVAAL 150 ++ +LG + D +L + Q EI + + + + +++VDS+ Sbjct: 67 GISMERFS-QLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMT-- 123 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL-------KQSNTLLIFINQIRMKIGVM 203 E + G+ + ++ LA L ++ N +I NQ+ M Sbjct: 124 --------EFYRAERGVEEDLSAKKRSSLAWQLSILNSIARKKNIAVIITNQVYMDTTTK 175 Query: 204 FGNPETTTGGNALKFYASVRLDIRRIG 230 P GG+ L A + +R+IG Sbjct: 176 ELRP---IGGHTLHHNAKTIIFLRKIG 199 >UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae RepID=A7HJZ5_FERNB Length = 465 Score = 41.2 bits (95), Expect = 0.060, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 11/131 (8%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV---IAAAQREGKTCA 92 ++ E I TG S+D L +GGL G+++ + G GK+T+ LQ+ IA K Sbjct: 71 LEEERIKTGINSID-ELLSGGLIKGQVILLGGEPGVGKSTIALQICDSIARNSNNDKRIY 129 Query: 93 FIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 +I E ++ + A++LG++ + LL S E L D +IVVDS+ L Sbjct: 130 YISGEESVGQVGLRAKRLGINNEKLLISSETQIEDILNEIDP----NKAQLIVVDSIQTL 185 Query: 151 TPKAEIEGEIG 161 +I+ +G Sbjct: 186 C-SVDIDSPVG 195 >UniRef50_O14129 DNA repair protein rhp55 n=1 Tax=Schizosaccharomyces pombe RepID=RAD55_SCHPO Length = 350 Score = 41.2 bits (95), Expect = 0.062, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 7/95 (7%) Query: 48 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 107 LD A G GL G I E+ G GKT+L LQ+ A A G +++ PI + Sbjct: 32 LDDAFGGSGLKRGYISEVCGAPGMGKTSLALQITANALLSGSRVIWVE---TCQPIPMER 88 Query: 108 LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 142 L +DN + S D E+ CD +DV+ Sbjct: 89 LRQLLDNHVPSSQDEEEK----CDTDELLNLLDVV 119 >UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium jeikeium RepID=Q4JXK0_CORJK Length = 454 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 16/157 (10%) Query: 43 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 102 TG LD LG G +P G V + G GK+TL L+V AA ++G T + AE ++ Sbjct: 72 TGIGELDRVLGGGIVP-GSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVLILTAEESVGQ 130 Query: 103 IYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 160 + R + G D L + + E L DAL ++I+VDS+ + +EG Sbjct: 131 VRHRAERTGALHDKLYLASENDLENGLAQVDALNP----ELIIVDSLQTMQATG-VEGVA 185 Query: 161 GDSHMGLA-ARMMSQAMRKLAGNLKQSNTLLIFINQI 196 G G+A R ++ + LA K S T +I + + Sbjct: 186 G----GVAQTRAVTSTLTTLA---KMSGTPVIAVGHV 215 >UniRef50_D1ZTD1 Putative RAD55 protein n=1 Tax=Sordaria macrospora RepID=D1ZTD1_SORMA Length = 441 Score = 40.8 bits (94), Expect = 0.074, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 47 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 SLDI + GG+ +++EI+GP GKT +Q+ EGK ++D H Sbjct: 58 SLDIDIVTGGVQKAQVIEIWGPPGVGKTAFGVQLATNCLGEGKGVVWVDGFH 109 >UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34D2F Length = 485 Score = 40.8 bits (94), Expect = 0.080, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 7/114 (6%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E TG L+ LG GG+ G +V + G GK+TL LQV G+ +I E Sbjct: 101 ERTDTGFGELNRVLG-GGIVKGSLVLVGGDPGIGKSTLLLQVCRNLAAGGQKVLYISGEE 159 Query: 99 ALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 +L I R ++G ++ + LC +T LE+ + R A D +++DS+ + Sbjct: 160 SLKQIKIRASRIG-EMSDSLCFLCETN---LEMIQEVVRRTAPDTVIIDSIQTM 209 >UniRef50_B8G8K6 Putative circadian clock protein, KaiC n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G8K6_CHLAD Length = 565 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 14/131 (10%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 92 D E IS+G LD L G G + I GP SGKT+L + AA G+ Sbjct: 241 DYPASTEHISSGFPDLDSLLDGGSYYRGSTILISGPTGSGKTSLGALFLNAACARGEPAI 300 Query: 93 FIDAEHALDPIY--ARKLGVDID--------NLLCSQPD-TG--EQALEICDALARSGAV 139 E + D I R +GVD+ ++ S+P TG + I + +SGA Sbjct: 301 LFGFEESADQIMRNMRSIGVDLHQWYERGLLQIVSSRPTLTGLETHLITILSTVEQSGA- 359 Query: 140 DVIVVDSVAAL 150 V+V+D + Sbjct: 360 RVVVIDPITGF 370 >UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUE9_SYNWW Length = 451 Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 13/161 (8%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 96 D S+G D LG G +P G ++ + G GK+TL LQV GK ++ Sbjct: 62 DSPRFSSGLSEFDRVLGGGIVP-GSLILLGGDPGIGKSTLLLQVAGLIAAAGKRILYLSG 120 Query: 97 EHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL--TP 152 E +L I R +LG++ D + EQ +++ D+I++DS+ + + Sbjct: 121 EESLQQIRLRASRLGINNDTIFL----LNEQDIDLLHEYINDLDPDLIIIDSIQTVYSSK 176 Query: 153 KAEIEGEIGDSHMGLAARM-MSQAMRK---LAGNLKQSNTL 189 + I G + AA M +++ M K L G++ + +L Sbjct: 177 LSSIPGSVSQLRESTAAVMQIAKKMDKAVFLVGHVTKDGSL 217 >UniRef50_B1L6V3 Rad51 domain protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6V3_KORCO Length = 298 Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 17/104 (16%) Query: 62 IVEIYGPESSGKTT----LTLQVIAAAQREG---KTCAFIDAEHALDP----IYARKLGV 110 I IYGP +SGKT +T++ + +R G + FID E DP + R+ G+ Sbjct: 94 ITGIYGPPASGKTQFCIYMTVRSLLNEERGGISSERAVFIDTEGTFDPGRASAFLRQNGL 153 Query: 111 D------IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 148 ID L + ++ALEI + RSG +I +DS++ Sbjct: 154 SERDLSRIDVLRVNNIIQLKEALEIAMSYVRSGTSKLICLDSIS 197 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P65982 Protein recA n=985 Tax=cellular organisms RepID=... 409 e-113 UniRef50_C3PGY9 Protein recA n=2887 Tax=root RepID=RECA_CORA7 409 e-113 UniRef50_C8PSA2 Protein recA n=1 Tax=Treponema vincentii ATCC 35... 392 e-107 UniRef50_Q39199 DNA repair protein recA homolog 1, chloroplastic... 385 e-106 UniRef50_B0MMT9 Protein recA n=3 Tax=Bacteria RepID=B0MMT9_9FIRM 380 e-104 UniRef50_B2S3T1 Protein recA n=947 Tax=cellular organisms RepID=... 379 e-104 UniRef50_C2F9G8 Protein recA n=1 Tax=Lactobacillus paracasei sub... 375 e-102 UniRef50_A3ZNU6 Protein recA n=4 Tax=Bacteria RepID=A3ZNU6_9PLAN 370 e-101 UniRef50_B5RLK6 Protein recA n=43 Tax=cellular organisms RepID=R... 369 e-100 UniRef50_A8I670 Chloroplast RecA recombination protein n=3 Tax=C... 367 e-100 UniRef50_C1E9Q3 RecA DNA recombinase n=3 Tax=Viridiplantae RepID... 367 e-100 UniRef50_A4PHN2 RecA n=1 Tax=Physcomitrella patens RepID=A4PHN2_... 360 6e-98 UniRef50_C1TRT4 Protein recA n=2 Tax=Synergistaceae RepID=C1TRT4... 358 1e-97 UniRef50_B5YLR6 Predicted protein n=1 Tax=Thalassiosira pseudona... 356 6e-97 UniRef50_Q9ZUP2 DNA repair protein recA homolog 3, mitochondrial... 345 2e-93 UniRef50_B7FQ63 Chloroplast-targeted nuclear-encoded recombinase... 342 9e-93 UniRef50_C0R0F2 Protein recA n=3 Tax=Bacteria RepID=C0R0F2_BRAHW 342 2e-92 UniRef50_Q8EVC7 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCPE 336 7e-91 UniRef50_D1IJ27 Whole genome shotgun sequence of line PN40024, s... 322 8e-87 UniRef50_B1AI69 Protein recA n=15 Tax=Ureaplasma RepID=RECA_UREP2 322 1e-86 UniRef50_Q59486 Protein recA, plasmid n=3 Tax=Lactococcus lactis... 312 2e-83 UniRef50_Q8RY99 DNA repair protein recA homolog 2, mitochondrial... 310 7e-83 UniRef50_Q6ASS3 DNA repair protein recA, putative n=2 Tax=cellul... 308 2e-82 UniRef50_P47581 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCGE 296 9e-79 UniRef50_B9EWE7 Putative uncharacterized protein n=3 Tax=Poaceae... 295 2e-78 UniRef50_Q3F0X4 RecA protein n=2 Tax=Bacillus thuringiensis RepI... 290 4e-77 UniRef50_A0MN30 RecA/RadA recombinase n=1 Tax=Thermus phage phiY... 275 1e-72 UniRef50_P35901 Mle recA intein n=1019 Tax=root RepID=RECA_MYCLE 271 3e-71 UniRef50_Q05FN0 Protein recA n=1 Tax=Candidatus Carsonella ruddi... 263 6e-69 UniRef50_A7KV38 RecA n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7... 245 2e-63 UniRef50_A0A7C2 RecA recombinase n=1 Tax=Microcystis aeruginosa ... 229 1e-58 UniRef50_C1KFR4 Putative recombinase A n=1 Tax=Lactobacillus pha... 218 3e-55 UniRef50_B9H9J7 Predicted protein n=1 Tax=Populus trichocarpa Re... 218 4e-55 UniRef50_C7T573 Protein recA n=1 Tax=Pseudomonas putida RepID=C7... 216 9e-55 UniRef50_A8ASX5 Gp141 n=3 Tax=unclassified SPO1-like viruses Rep... 214 3e-54 UniRef50_C4Z5Y6 Protein recA n=1 Tax=Eubacterium eligens ATCC 27... 213 1e-53 UniRef50_Q4Z9W4 ORF021 n=4 Tax=unclassified SPO1-like viruses Re... 210 6e-53 UniRef50_B5LJG5 Gp193 n=9 Tax=unclassified Myoviridae RepID=B5LJ... 210 6e-53 UniRef50_C7F8K4 Recombination repair protein n=1 Tax=Bacillus ph... 209 8e-53 UniRef50_Q8L1K7 Glutamine synthetase 1 (Fragment) n=8 Tax=Rhizob... 206 9e-52 UniRef50_A4TT30 Recombinase n=19 Tax=Enterobacteriaceae RepID=A4... 203 7e-51 UniRef50_A4AAG4 RecA bacterial DNA recombination protein n=1 Tax... 194 4e-48 UniRef50_Q02AB2 Protein recA n=1 Tax=Candidatus Solibacter usita... 189 1e-46 UniRef50_Q7Y594 UvsX RecA-like recombination protein n=3 Tax=unc... 184 4e-45 UniRef50_C8XUF9 UvsX RecA-like recombination protein n=1 Tax=Shi... 182 1e-44 UniRef50_P04529 Recombination and repair protein n=12 Tax=T4-lik... 181 3e-44 UniRef50_Q5ULR1 Recombinase A n=1 Tax=Lactobacillus phage LP65 R... 181 5e-44 UniRef50_UPI0001BCAEAD recA protein n=1 Tax=Fusobacterium period... 178 3e-43 UniRef50_A8AB83 DNA repair and recombination protein radA n=16 T... 174 5e-42 UniRef50_B9L413 RecA protein n=1 Tax=Thermomicrobium roseum DSM ... 171 3e-41 UniRef50_Q5GQK3 RecA-like recombination protein n=6 Tax=root Rep... 171 3e-41 UniRef50_P37384 Meiotic recombination protein DMC1 homolog n=10 ... 168 3e-40 UniRef50_O93748 DNA repair and recombination protein radA n=3 Ta... 166 1e-39 UniRef50_Q94CQ8 P0660F12.22 protein n=1 Tax=Oryza sativa Japonic... 165 2e-39 UniRef50_Q4N2W2 DNA repair protein rad51, putative n=2 Tax=Eukar... 161 3e-38 UniRef50_A4WN87 DNA repair and recombination protein radA n=17 T... 161 3e-38 UniRef50_Q39009 Meiotic recombination protein DMC1 homolog n=49 ... 161 4e-38 UniRef50_D1ZY30 Whole genome shotgun sequence assembly, contig_3... 161 4e-38 UniRef50_A7ATP8 Rad51 protein, putative n=1 Tax=Babesia bovis Re... 160 8e-38 UniRef50_Q14565 Meiotic recombination protein DMC1/LIM15 homolog... 160 9e-38 UniRef50_A4YCN4 DNA repair and recombination protein radA n=12 T... 155 2e-36 UniRef50_D2EF50 DNA repair and recombination protein RadA n=1 Ta... 155 3e-36 UniRef50_Q95Q25 Protein Y43C5A.6a, confirmed by transcript evide... 154 6e-36 UniRef50_A8L2Z2 RecA domain protein n=1 Tax=Frankia sp. EAN1pec ... 153 9e-36 UniRef50_Q8IB05 Meiotic recombination protein dmc1-like protein ... 152 2e-35 UniRef50_Q013L3 DNA repair protein RAD51/RHP55 (ISS) n=2 Tax=Chl... 151 3e-35 UniRef50_C1FJ81 DMC1 DNA recombinase n=5 Tax=Chlorophyta RepID=C... 148 2e-34 UniRef50_P25453 Meiotic recombination protein DMC1 n=38 Tax=Sacc... 147 6e-34 UniRef50_A2SR54 DNA repair and recombination protein radA n=31 T... 145 3e-33 UniRef50_UPI0000D55904 PREDICTED: similar to Dmc1 homolog n=1 Ta... 143 7e-33 UniRef50_Q8TVF0 RadA recombinase n=1 Tax=Methanopyrus kandleri R... 143 1e-32 UniRef50_C1MTK4 Rad51 DNA recombinase 1 n=1 Tax=Micromonas pusil... 140 6e-32 UniRef50_A5LPZ1 Recombinase A n=1 Tax=Streptococcus pneumoniae S... 138 2e-31 UniRef50_B0R636 DNA repair and recombination protein radB n=4 Ta... 135 3e-30 UniRef50_UPI0001AF06D9 RecA-like recombinase n=1 Tax=Acinetobact... 132 1e-29 UniRef50_O28184 DNA repair and recombination protein radB n=3 Ta... 132 1e-29 UniRef50_Q555F1 Putative uncharacterized protein n=1 Tax=Dictyos... 131 3e-29 UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Ta... 126 1e-27 UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Ta... 126 1e-27 UniRef50_Q1IJA5 RecA/RadA recombinase-like n=1 Tax=Candidatus Ko... 122 3e-26 UniRef50_O27728 DNA repair and recombination protein radB n=1 Ta... 121 3e-26 UniRef50_Q01QX0 RecA domain protein n=1 Tax=Candidatus Solibacte... 119 2e-25 UniRef50_A4FYL0 DNA repair and recombination protein radB n=10 T... 114 4e-24 UniRef50_C6A0N1 DNA repair and recombination protein radB n=9 Ta... 111 3e-23 UniRef50_Q6Y3G2 RecA (Fragment) n=1 Tax=Geobacter hydrogenophilu... 110 8e-23 UniRef50_Q1D5A2 Putative recA protein n=2 Tax=Cystobacterineae R... 108 3e-22 UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B... 108 3e-22 UniRef50_Q8TWK1 RadA recombinase n=1 Tax=Methanopyrus kandleri R... 107 7e-22 UniRef50_C1AAH5 RecA protein homolog n=1 Tax=Gemmatimonas aurant... 106 2e-21 UniRef50_A3ZPQ5 Putative uncharacterized protein n=1 Tax=Blastop... 105 2e-21 UniRef50_C1F5L9 Putative uncharacterized protein n=2 Tax=Acidoba... 103 1e-20 UniRef50_A8TH99 AAA ATPase n=1 Tax=Methanococcus voltae A3 RepID... 102 2e-20 UniRef50_C5KD76 Meiotic recombination protein DMC1, putative n=2... 99 3e-19 UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacte... 97 7e-19 UniRef50_C5A470 RecA family AAA ATPase n=2 Tax=Thermococcus RepI... 96 1e-18 UniRef50_A9FIX3 RecA recombinase homolog n=1 Tax=Sorangium cellu... 96 2e-18 UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickett... 96 2e-18 UniRef50_C0AXS3 Putative uncharacterized protein n=1 Tax=Proteus... 94 9e-18 UniRef50_A0RYZ3 RecA/RadA recombinase related protein n=1 Tax=Ce... 93 1e-17 UniRef50_D1H4V0 Whole genome shotgun sequence of line PN40024, s... 87 6e-16 UniRef50_A6STQ0 Putative uncharacterized protein n=1 Tax=Botryot... 87 1e-15 UniRef50_B5JLQ1 Putative uncharacterized protein n=1 Tax=Verruco... 86 1e-15 UniRef50_A3LTU6 Predicted protein n=1 Tax=Pichia stipitis RepID=... 86 3e-15 UniRef50_Q5A2U1 Putative uncharacterized protein RAD57 n=1 Tax=C... 85 3e-15 UniRef50_Q6BWA8 DEHA2B13024p n=2 Tax=Debaryomyces hansenii RepID... 85 5e-15 UniRef50_B5IFC8 Putative uncharacterized protein n=2 Tax=Aciduli... 84 8e-15 UniRef50_B9WC87 DNA repair protein, putative n=1 Tax=Candida dub... 84 1e-14 UniRef50_B5I9Z9 KaiC domain protein n=3 Tax=Aciduliprofundum boo... 83 1e-14 UniRef50_B2ZYC0 Rec A-like recombinase n=1 Tax=Ralstonia phage R... 82 2e-14 UniRef50_C2BP13 Putative uncharacterized protein (Fragment) n=1 ... 81 6e-14 UniRef50_Q977U1 RecA-like protein (Fragment) n=2 Tax=Thermoprote... 80 2e-13 Sequences not found previously or not previously below threshold: UniRef50_Q06609 DNA repair protein RAD51 homolog 1 n=385 Tax=Euk... 152 2e-35 UniRef50_Q4UA75 DNA repair (Rad51 homologue) protein, putative n... 150 7e-35 UniRef50_Q0CWT1 Meiotic recombination protein DMC1 n=22 Tax=Dika... 142 2e-32 UniRef50_UPI00006CB33C hypothetical protein TTHERM_00459230 n=1 ... 134 4e-30 UniRef50_A8N2F5 Putative uncharacterized protein n=1 Tax=Coprino... 130 8e-29 UniRef50_B5IA62 DNA repair and recombination protein RadB n=2 Ta... 128 3e-28 UniRef50_C9DGK5 UvsX RecA-like recombination protein n=1 Tax=Def... 124 4e-27 UniRef50_Q3LW29 DNA recombination and repair protein n=1 Tax=Big... 124 5e-27 UniRef50_A6R196 DNA repair protein RAD51 n=3 Tax=Eukaryota RepID... 124 5e-27 UniRef50_A1RYZ3 Rad51-like protein n=1 Tax=Thermofilum pendens H... 120 7e-26 UniRef50_Q18EU1 DNA repair and recombination protein radA n=165 ... 120 7e-26 UniRef50_A5UKT8 DNA repair and recombination protein radB n=4 Ta... 119 2e-25 UniRef50_Q12U80 DNA repair and recombination protein radB n=8 Ta... 119 2e-25 UniRef50_Q18FI4 DNA repair and recombination protein RadB n=2 Ta... 117 5e-25 UniRef50_Q5JET4 Pko radA intein n=2 Tax=Euryarchaeota RepID=RADA... 115 3e-24 UniRef50_D0NZ01 DNA repair and recombination protein radA, putat... 113 9e-24 UniRef50_O58001 Pho radA intein n=30 Tax=Archaea RepID=RADA_PYRHO 110 7e-23 UniRef50_B9RR28 DNA repair protein rad51, putative n=1 Tax=Ricin... 110 8e-23 UniRef50_B4DMW6 cDNA FLJ56732, highly similar to Meiotic recombi... 108 3e-22 UniRef50_B9LPC6 DNA repair and recombination protein RadB n=7 Ta... 107 5e-22 UniRef50_A3MXS9 Rad51-like protein n=6 Tax=Thermoproteaceae RepI... 105 2e-21 UniRef50_UPI00005020FA similar to RAD51 homolog protein isoform ... 100 7e-20 UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquifica... 100 9e-20 UniRef50_A1RY65 Rad51-like protein n=1 Tax=Thermofilum pendens H... 100 1e-19 UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q... 98 4e-19 UniRef50_A9A126 RecA/RadA recombinase-like protein n=1 Tax=Nitro... 96 1e-18 UniRef50_UPI000180D2F5 PREDICTED: similar to Rad51 homolog c n=1... 96 2e-18 UniRef50_C1FDH7 Rad51 DNA recombinase 3 n=4 Tax=Mamiellales RepI... 96 2e-18 UniRef50_UPI0000586FDE PREDICTED: similar to RAD51L2/RAD51C prot... 96 2e-18 UniRef50_B0XK02 RAD51D n=2 Tax=Culicini RepID=B0XK02_CULQU 96 3e-18 UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID... 95 3e-18 UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridi... 95 3e-18 UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio ac... 95 3e-18 UniRef50_A0NCA9 AGAP003791-PA n=1 Tax=Anopheles gambiae RepID=A0... 95 4e-18 UniRef50_UPI00019A9ED6 RAD51 homolog C n=1 Tax=Nasonia vitripenn... 95 5e-18 UniRef50_Q97B99 DNA repair and recombination protein radB n=3 Ta... 94 6e-18 UniRef50_B5LBC4 RAD51D transcript variant delta 10 n=14 Tax=Eute... 94 1e-17 UniRef50_UPI00005234FA PREDICTED: similar to RAD51-like 3 (S. ce... 93 1e-17 UniRef50_Q6L2I8 DNA repair and recombination protein RadB n=1 Ta... 93 1e-17 UniRef50_UPI0001793527 PREDICTED: similar to X-ray repair comple... 93 1e-17 UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium m... 93 1e-17 UniRef50_Q4RWF9 Chromosome undetermined SCAF14988, whole genome ... 93 2e-17 UniRef50_C9SL37 DNA repair protein RAD57 n=4 Tax=Sordariomyceta ... 92 2e-17 UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=... 92 3e-17 UniRef50_B5LW25 RAD51D protein n=4 Tax=BEP clade RepID=B5LW25_WHEAT 92 3e-17 UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus ... 92 4e-17 UniRef50_B6UY07 Spindle A (Fragment) n=6 Tax=melanogaster subgro... 92 4e-17 UniRef50_B6HD82 Pc20g01450 protein n=1 Tax=Penicillium chrysogen... 91 4e-17 UniRef50_UPI0000E48A98 PREDICTED: hypothetical protein n=2 Tax=S... 91 4e-17 UniRef50_UPI0000F2B25B PREDICTED: similar to RAD51-like 1 (S. ce... 91 6e-17 UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain pr... 90 9e-17 UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter ked... 90 9e-17 UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga letti... 90 1e-16 UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae ... 90 1e-16 UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=... 90 1e-16 UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickett... 90 1e-16 UniRef50_C9JYJ0 Putative uncharacterized protein RAD51L1 n=1 Tax... 89 2e-16 UniRef50_O15315 DNA repair protein RAD51 homolog 2 n=30 Tax=Deut... 89 2e-16 UniRef50_B7FT85 Rad51 DNA recombination/repair protein (Fragment... 89 2e-16 UniRef50_Q2USE9 Predicted protein n=9 Tax=Trichocomaceae RepID=Q... 89 2e-16 UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus Rep... 89 2e-16 UniRef50_B6Q8E5 DNA repair protein (Rad57), putative n=2 Tax=Tri... 89 2e-16 UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisu... 89 3e-16 UniRef50_C5U657 DNA repair and recombination protein RadB n=1 Ta... 89 3e-16 UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae R... 89 3e-16 UniRef50_Q9SK02 DNA repair protein RAD51 homolog 2 n=7 Tax=Magno... 89 3e-16 UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas w... 88 4e-16 UniRef50_B6H3A8 Pc13g13180 protein n=1 Tax=Penicillium chrysogen... 88 5e-16 UniRef50_UPI0001B416BF DNA repair and recombination protein RadB... 88 5e-16 UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae R... 88 5e-16 UniRef50_B7GAG1 Rad51 DNA recombination/repair protein n=1 Tax=P... 88 5e-16 UniRef50_Q93YY9 RAD51C protein n=2 Tax=Chlamydomonas reinhardtii... 88 6e-16 UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID... 87 7e-16 UniRef50_Q9LQQ2 DNA repair protein RAD51 homolog 4 n=5 Tax=Embry... 87 7e-16 UniRef50_B7Q5G3 DNA repair protein RAD51/RHP55, putative n=1 Tax... 87 8e-16 UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vagi... 87 9e-16 UniRef50_O43502 DNA repair protein RAD51 homolog 3 n=37 Tax=Eute... 87 9e-16 UniRef50_B6JWI2 DNA repair and recombination protein radA n=1 Ta... 87 1e-15 UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B... 87 1e-15 UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteri... 87 1e-15 UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales Re... 87 1e-15 UniRef50_Q8GXF0 DNA repair protein RAD51 homolog 3 n=15 Tax=Magn... 87 1e-15 UniRef50_Q7ZTX4 Zgc:56581 n=7 Tax=Euteleostomi RepID=Q7ZTX4_DANRE 86 2e-15 UniRef50_P25301 DNA repair protein RAD57 n=6 Tax=Saccharomycetac... 86 2e-15 UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibac... 86 2e-15 UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C... 86 2e-15 UniRef50_C1EGX8 Rad51 DNA recombinase 2 n=2 Tax=Micromonas RepID... 86 2e-15 UniRef50_Q8SZF1 RE02671p n=28 Tax=Drosophila RepID=Q8SZF1_DROME 86 2e-15 UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium ... 86 2e-15 UniRef50_D1H4Y9 Whole genome shotgun sequence of line PN40024, s... 86 2e-15 UniRef50_B6TBD6 DNA repair protein RAD51 n=3 Tax=Andropogoneae R... 85 3e-15 UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae ... 85 4e-15 UniRef50_Q9UUL2 DNA repair protein rhp57 n=1 Tax=Schizosaccharom... 85 5e-15 UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloac... 84 5e-15 UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum s... 84 5e-15 UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius t... 84 5e-15 UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteri... 84 5e-15 UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succ... 84 6e-15 UniRef50_C4QGE0 DNA repair protein rad51 homolog 3, r51h3, putat... 84 6e-15 UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponem... 84 6e-15 UniRef50_UPI00017F0C6E PREDICTED: similar to RAD51 homolog, part... 84 6e-15 UniRef50_B6UY45 Spindle B (Fragment) n=1 Tax=Drosophila melanoga... 84 8e-15 UniRef50_A4R1B5 Putative uncharacterized protein n=1 Tax=Magnapo... 84 9e-15 UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C... 84 1e-14 UniRef50_UPI0001758334 PREDICTED: similar to GA17378-PA n=1 Tax=... 83 1e-14 UniRef50_B0WMV3 DNA-repair protein XRCC3 n=2 Tax=Culicini RepID=... 83 1e-14 UniRef50_O75771 DNA repair protein RAD51 homolog 4 n=32 Tax=Eute... 83 1e-14 UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candi... 83 1e-14 UniRef50_C5DPN1 ZYRO0A04708p n=2 Tax=Saccharomycetaceae RepID=C5... 83 2e-14 UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales... 82 2e-14 UniRef50_Q54PJ7 DNA repair protein RAD51 homolog 3 n=1 Tax=Dicty... 82 2e-14 UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales... 82 2e-14 UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobact... 82 4e-14 UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acet... 82 4e-14 UniRef50_B0XGX6 RAD51C protein n=3 Tax=Culicini RepID=B0XGX6_CULQU 81 5e-14 UniRef50_Q5BL30 X-ray repair complementing defective repair in C... 81 6e-14 UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio Re... 81 6e-14 UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus ... 81 6e-14 UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinob... 81 6e-14 UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicut... 81 7e-14 UniRef50_C5M7H8 Putative uncharacterized protein n=2 Tax=Candida... 81 8e-14 UniRef50_Q54QU4 AAA ATPase domain-containing protein n=1 Tax=Dic... 81 8e-14 UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria R... 80 1e-13 UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilon... 80 1e-13 UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp... 80 1e-13 UniRef50_Q6MQS4 RecA protein n=1 Tax=Bdellovibrio bacteriovorus ... 80 1e-13 UniRef50_Q3JBH0 KaiC n=3 Tax=Chromatiales RepID=Q3JBH0_NITOC 79 2e-13 UniRef50_A4S2Y8 Predicted protein n=1 Tax=Ostreococcus lucimarin... 79 2e-13 UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organ... 79 2e-13 UniRef50_B2B0Y8 Predicted CDS Pa_3_7770 n=1 Tax=Podospora anseri... 79 2e-13 UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bac... 79 2e-13 UniRef50_B5ISK3 KaiC domain protein n=5 Tax=Thermococcaceae RepI... 79 2e-13 UniRef50_B6QPB3 Putative uncharacterized protein n=1 Tax=Penicil... 79 3e-13 UniRef50_A1CPK9 DNA repair protein (Rad57), putative n=10 Tax=Tr... 79 3e-13 UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobac... 78 4e-13 UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termi... 78 4e-13 UniRef50_B2DFU0 Rad57 protein n=2 Tax=Coprinopsis cinerea RepID=... 78 4e-13 UniRef50_O29896 Putative uncharacterized protein n=2 Tax=Archaeo... 78 4e-13 UniRef50_B7Q095 RAD51C protein, putative n=1 Tax=Ixodes scapular... 78 5e-13 >UniRef50_P65982 Protein recA n=985 Tax=cellular organisms RepID=RECA_TROW8 Length = 437 Score = 409 bits (1051), Expect = e-113, Method: Composition-based stats. Identities = 203/347 (58%), Positives = 255/347 (73%), Gaps = 2/347 (0%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 N+ +AL AL I++Q+GKG++MR+ + + ++ I TGS++LD ALG GGLP GRIVEI Sbjct: 8 NRTRALELALANIDRQYGKGAVMRMNDAQKAYIDVIPTGSIALDYALGVGGLPRGRIVEI 67 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPESSGKTTLTL IA+ QR G AFIDAEHALDP YA+KLGVDID LL SQPD+GEQ Sbjct: 68 YGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDSGEQ 127 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 ALEI D L RS A+D+IV+DSVAAL P+AE+EG++GD H+GL AR+MSQA+RK+ L Q Sbjct: 128 ALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKITSGLNQ 187 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245 + T IFINQ+R K+GV FG+PETT GG ALKFYASVRLDIRR+ +K+G VG+ TRV Sbjct: 188 TGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNRTRV 247 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN 305 KVVKNK+A PFKQAEF +LYG GI+ L+D V +I+K+G+WY Y +++GQGK N Sbjct: 248 KVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLGQGKEN 307 Query: 306 ATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNED 352 A +L +N A EIE K+ LL N D D + T+ D Sbjct: 308 ARRFLLENKSVADEIENKIISLLGFRSNEFGDLP--DHDAAVRTSPD 352 >UniRef50_C3PGY9 Protein recA n=2887 Tax=root RepID=RECA_CORA7 Length = 377 Score = 409 bits (1051), Expect = e-113, Method: Composition-based stats. Identities = 210/324 (64%), Positives = 263/324 (81%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 +++QKAL AA+ IEK FGKG++MRLG+D ++ IS+G+ ++DIALG GG P GRIVE Sbjct: 14 DDRQKALDAAMAMIEKDFGKGAVMRLGDDDRPPIQAISSGNTAIDIALGVGGFPRGRIVE 73 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYGPESSGKTT+ L IA+AQ+ G AFIDAEHALDP YAR LGVD DNLL SQPDTGE Sbjct: 74 IYGPESSGKTTVALHAIASAQKTGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTGE 133 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QALEI D L RSGA+D+IV+DSVAALTPKAEIEGE+GDSH+GL AR+MSQA+RK+ G L Sbjct: 134 QALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALY 193 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 S T IFINQ+R KIGVMFG+PETTTGG ALKFYASVR DIRRI +K+G++ +G+ T+ Sbjct: 194 NSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRTK 253 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 +KVVKNK++ PFK AEF I+YGEGI+ ++DLGV+ I+K+G+W++Y+G+++GQGK Sbjct: 254 LKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGKE 313 Query: 305 NATAWLKDNPETAKEIEKKVRELL 328 A +LKDNP+ A EIEKK+ L Sbjct: 314 KARNFLKDNPDLADEIEKKIFVKL 337 >UniRef50_C8PSA2 Protein recA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSA2_9SPIO Length = 441 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 206/349 (59%), Positives = 266/349 (76%), Gaps = 2/349 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRIV 63 + K KAL AA QIEK+FG+GS+M+LG +E I +GS+ LD ALG GG P GRI+ Sbjct: 18 DEKLKALEAARLQIEKEFGQGSLMKLGSKTEASGIEVIPSGSILLDEALGIGGYPRGRII 77 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 EI+GPESSGKTTL L V+A AQ+ G AF+DAEHALDP YA+KLGV+ID L +QPD G Sbjct: 78 EIFGPESSGKTTLALHVVAEAQKRGGIAAFVDAEHALDPQYAQKLGVNIDELWVAQPDAG 137 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQALEI + L RSGAVDVIVVDSVAALTP+AEI+GE+GDSHMGL AR+MSQA+RKL + Sbjct: 138 EQALEITENLVRSGAVDVIVVDSVAALTPQAEIDGEMGDSHMGLQARLMSQALRKLTAII 197 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV-KEGENVVGSE 242 +S +LIFINQIRMKIG+ +GNPETTTGGNALKFY+SVR+++R+ + K+ + G++ Sbjct: 198 SRSKCILIFINQIRMKIGIAYGNPETTTGGNALKFYSSVRIEVRKGEVLGKDEDEAWGNK 257 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 R+KVVKNK+A PF++ E +IL+G+GI+ YG L+D VK +LI+K GAWYSYK +KIGQG Sbjct: 258 VRIKVVKNKVAPPFRKVELEILFGKGISPYGSLLDCAVKYELIDKKGAWYSYKEDKIGQG 317 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351 NA +L+DNP+ A ++EK +R L N F++ + E A++ E Sbjct: 318 HDNAVKFLEDNPDVAIDLEKTLRARLFPNQKYVSSFAISNQESGADSGE 366 >UniRef50_Q39199 DNA repair protein recA homolog 1, chloroplastic n=148 Tax=cellular organisms RepID=RECAC_ARATH Length = 439 Score = 385 bits (990), Expect = e-106, Method: Composition-based stats. Identities = 182/328 (55%), Positives = 240/328 (73%), Gaps = 3/328 (0%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++QKAL AA+ I FGKGS+ RLG VET S+G L+LD+ALG GGLP GR+VEI Sbjct: 82 DRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALG-GGLPKGRVVEI 140 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE Sbjct: 141 YGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEM 200 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 ALE D + RSGAVD+I VDSV+ALTP+AEIEGEIG MGL AR+MSQA+RK++GN + Sbjct: 201 ALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASK 260 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSET 243 + LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K +G+ +G Sbjct: 261 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRA 320 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 RV+V K+K++ P+KQAEF+I++GEG++ G ++D +++ K G+WYSY+ +++GQG+ Sbjct: 321 RVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGR 380 Query: 304 ANATAWLKDNPETAKEIEKKVRELLLSN 331 A L++NP EIEKKVR L+L Sbjct: 381 EKALQHLRENPALQDEIEKKVRLLMLDG 408 >UniRef50_B0MMT9 Protein recA n=3 Tax=Bacteria RepID=B0MMT9_9FIRM Length = 419 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 191/351 (54%), Positives = 258/351 (73%), Gaps = 4/351 (1%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGE--DRSMDVETISTGSLSLDIALGAGGLPMGRI 62 E K+KAL A+ QI K +G+G++M LG ++ +DVE++ TGS+ LD ALG GGLP GRI Sbjct: 20 EEKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRI 79 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 +EIYGPES GKTT+TL IA Q+ G AFID EHALDP+YA+ LGVDID+L+ SQPDT Sbjct: 80 IEIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDT 139 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 GEQALEI + LARSGA+D++V+DSVAA+ KAEI+GEIGDS +G+ AR+MS AMRKL Sbjct: 140 GEQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSV 199 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 + +SNT+ IFINQ+R KIGVM+GNPETT GG ALKFYASVR+++R+ + + ++G Sbjct: 200 ISKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYT 259 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 T+ KVVKNK+A PFK+ +F +++GEGI+ GE++ +G + I+K+GAWYSY GE++GQG Sbjct: 260 TKCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQG 319 Query: 303 KANATAWLKDNPETAKEIEKKVRELL--LSNPNSTPDFSVDDSEGVAETNE 351 K +LK+N + EIE K++E + L S D+++ E Sbjct: 320 KEKTKKFLKENDDLRLEIEGKIKENMSKLDMSASEDGEGTDNADTSESAAE 370 >UniRef50_B2S3T1 Protein recA n=947 Tax=cellular organisms RepID=RECA_TREPS Length = 407 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 195/336 (58%), Positives = 255/336 (75%), Gaps = 2/336 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIV 63 E K KAL AA QIEKQFG+GS+M+LG+D + VE I TG++ LD ALG GG P GRI+ Sbjct: 16 EEKMKALEAARLQIEKQFGQGSLMKLGKDDAVQGVEVIPTGNILLDEALGIGGYPRGRII 75 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 EI+GPESSGKTTL L +A AQ+ G AFIDAEHALDP YA+ LGV + +L SQPDTG Sbjct: 76 EIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQPDTG 135 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQALEI ++L RSGAVD+IVVDSVAALTP+AEI+G++GD+H+GL AR+MSQA+RKL + Sbjct: 136 EQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLTSII 195 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG-ENVVGSE 242 +S LIFINQ+RMKIG+MFGNPETTTGG ALKFY+SVR+++R++ + G E G++ Sbjct: 196 NKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAWGNK 255 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 R+++VKNK+A PF++ E +IL+G+G + + L+D VK+++IEK GAWY+Y+ EKIGQG Sbjct: 256 VRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKIGQG 315 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDF 338 + NA +L+ N + EIE+ VR L F Sbjct: 316 RDNAVGFLQQNMDITLEIERAVRTKLFPKQAFISSF 351 >UniRef50_C2F9G8 Protein recA n=1 Tax=Lactobacillus paracasei subsp. paracasei ATCC 25302 RepID=C2F9G8_LACPA Length = 423 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 183/345 (53%), Positives = 256/345 (74%), Gaps = 4/345 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++ L AL +I+K FG+G++M++G+ + V+ +STG LSLD+ALG GGLP GRIVE+ Sbjct: 44 DRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEV 103 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPES+GKTT+ LQ IA Q+ G A+IDAE+A+DP YA +LGV+ID+LL SQP++GEQ Sbjct: 104 YGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQ 163 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 LEI + L S AVD++V+DSVAAL PKAEIEG IGDSH+GL AR+MSQA+RK+AG++ Sbjct: 164 GLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINN 223 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245 +NTL+IFINQ+R K+GVMFGNPE T GG ALKFYASVR++++R VK+G++VVG +++ Sbjct: 224 TNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFASKL 283 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKE----KLIEKAGAWYSYKGEKIGQ 301 KV KNK+A PFK E + +G GI ++++L + +I K+G+WY+Y E++GQ Sbjct: 284 KVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQ 343 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGV 346 G NA+ +L ++PE +KEIE+K+RE + D DD + Sbjct: 344 GLVNASHYLDEHPEISKEIEEKIREQVAPKKPEEADEKQDDKKDG 388 >UniRef50_A3ZNU6 Protein recA n=4 Tax=Bacteria RepID=A3ZNU6_9PLAN Length = 392 Score = 370 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 183/314 (58%), Positives = 245/314 (78%), Gaps = 1/314 (0%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 L L QIEK FG+G+IM LG + ++ +E I TGS+SLD+ALG GLP GR++EI+GPES Sbjct: 48 LKTTLQQIEKSFGEGAIMPLGSNHAV-IEGIPTGSISLDLALGGKGLPRGRVIEIFGPES 106 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 130 SGKTTL L VIA AQ G AF+DAEHALDP +A+KLGV+++ LL SQP +GE+ L+I Sbjct: 107 SGKTTLALHVIAQAQAMGGIAAFVDAEHALDPSWAKKLGVELETLLVSQPSSGEEGLQIT 166 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + L +S AVDVIVVDSVAAL PKAE+ GEIG SH+GL AR+MSQAMRKL G + +S T++ Sbjct: 167 EMLVKSNAVDVIVVDSVAALVPKAELNGEIGASHVGLQARLMSQAMRKLTGVISKSKTIV 226 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 IFINQIR K+GVMFG+PETT GG ALKFY S R+D+RRIG +K+GE+VVG R K+VKN Sbjct: 227 IFINQIREKVGVMFGSPETTPGGRALKFYCSCRVDVRRIGQLKDGEDVVGQRVRCKIVKN 286 Query: 251 KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWL 310 K+A PF+ AEF +++ GI++ G+++DL ++ K++ ++GAW+ Y ++GQGK A A+L Sbjct: 287 KVAPPFRIAEFDMMHSNGISYEGDILDLAIEAKIVARSGAWFRYGDIQLGQGKEKARAFL 346 Query: 311 KDNPETAKEIEKKV 324 +NP +E+++KV Sbjct: 347 MENPAMTEELKQKV 360 >UniRef50_B5RLK6 Protein recA n=43 Tax=cellular organisms RepID=RECA_BORDL Length = 363 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 187/343 (54%), Positives = 259/343 (75%), Gaps = 4/343 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVE 64 NK+KA+ A QIEK FGKGS++++GE +E+I +GS+ LD A+G GG P GR+VE Sbjct: 17 NKEKAIELARVQIEKDFGKGSLIKMGESPVGKYLESIPSGSILLDEAIGIGGYPRGRVVE 76 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 I+GPESSGKTTLTLQ IA Q+ G AFIDAEHALDP+YAR LGV+I+ L SQPDTGE Sbjct: 77 IFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGE 136 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QAL+I + L RSG VD+IVVDSVAALTP+AEI+GE+GD+ +GL AR+MS+A+RK+ L Sbjct: 137 QALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKITAILS 196 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV--KEGENVVGSE 242 +SNT ++FINQIRMKIG++FG+PETTTGGNALKFY+S+RL++R++ V +NV+G++ Sbjct: 197 KSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDNVIGNK 256 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 RVKVVKNK+A PF++AE + +G+GI+ ++D +K L++K+G+WY+ + +GQG Sbjct: 257 IRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDDNLGQG 316 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEG 345 + N +L A E+E K+R+++ +P S +VD S+ Sbjct: 317 RENVIEYLFKEKALANELENKLRKIIFESP-SQDSLTVDISKS 358 >UniRef50_A8I670 Chloroplast RecA recombination protein n=3 Tax=Chlamydomonas reinhardtii RepID=A8I670_CHLRE Length = 415 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 164/331 (49%), Positives = 233/331 (70%), Gaps = 1/331 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + K K + +I ++FG GSIMRL + + ++ET +GSL+LD ALG GG P GRI+E Sbjct: 60 DTKAKLFNETVDRITRRFGDGSIMRLSDSVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 +YGPE+SGKTTL + A QR G T A+ID EHA D YA +LG++++N +QP TGE Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +ALE+ D L RS D++V+DSVAAL P+AE+EG+IG +G AR++SQA+RKL+ + Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 +S T L FINQ+R KIGVMFGNPETT+GGNALK+Y+SVR+DIR+ + E + + R Sbjct: 239 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 298 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 KVVKNK+A+P K+A F+I YG GI+F G L+D + K++ + GA+Y Y +++GQG+ Sbjct: 299 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 358 Query: 305 NATAWLKDNPETAKEIEKKVRELLLSNPNST 335 A L+++ E IE VR++L +NP++ Sbjct: 359 KVLAALREDAERTAAIEAAVRDVLRANPDAA 389 >UniRef50_C1E9Q3 RecA DNA recombinase n=3 Tax=Viridiplantae RepID=C1E9Q3_9CHLO Length = 515 Score = 367 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 180/330 (54%), Positives = 241/330 (73%), Gaps = 3/330 (0%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 +A+ + K+KAL LG+I+ FGKGSIM+LGE V T +G+++LDIALG GG+P G Sbjct: 124 IAVRDAKKKALDRVLGEIDANFGKGSIMKLGEASQAKVATFPSGAMTLDIALG-GGMPRG 182 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 RIVE+YGPESSGKTTL L +A Q+ G T A IDAEHA DP Y+++LG+D+D+++ QP Sbjct: 183 RIVEVYGPESSGKTTLALHAMAEMQKLGGTVALIDAEHAFDPEYSQRLGLDVDDVVVCQP 242 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 +TGE ALE+ D L RS AVD+IVVDSVAAL P++EIEGEIG +G AR+MSQA+RK+ Sbjct: 243 ETGEMALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKIN 302 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV--KEGENV 238 N ++ +IF+NQ+R K+GV++GNPE TTGGNALKFYASVRLDIRR + K G + Sbjct: 303 VNAAKAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIRGKAGADD 362 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 298 G +VKV KNKIA P+K AEF +L+G GI+ G ++D + +I + GAWYSY E+ Sbjct: 363 EGVRVKVKVAKNKIAPPYKTAEFDMLFGRGISRDGCMLDAADELGVITRRGAWYSYGEER 422 Query: 299 IGQGKANATAWLKDNPETAKEIEKKVRELL 328 +GQG+ A +L NPE K++E+ VR ++ Sbjct: 423 LGQGREKAAEFLDANPEIKKQVEEDVRRVV 452 >UniRef50_A4PHN2 RecA n=1 Tax=Physcomitrella patens RepID=A4PHN2_PHYPA Length = 435 Score = 360 bits (923), Expect = 6e-98, Method: Composition-based stats. Identities = 173/352 (49%), Positives = 237/352 (67%), Gaps = 7/352 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 +KQ + AA+ QI K+ GK ++M LG + ++ + TGSL+LDIALG GGLP GR+VEI Sbjct: 76 SKQSLIQAAIDQIAKKHGKETVMWLGRESRDFIDVVPTGSLNLDIALGVGGLPKGRVVEI 135 Query: 66 YGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 +G E+SGKTT+ L VIA AQ+ GK C F+DAEHALD +A +GV+ +LL QPD E Sbjct: 136 FGQEASGKTTIALHVIAQAQKMGKGHCLFVDAEHALDMQFAEGIGVNTKDLLFVQPDYAE 195 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QAL+ D RS VDVIVVDSVAAL PKAE+EG++GDS M L AR+MS+A+R+L +L Sbjct: 196 QALDTVDHFVRSTGVDVIVVDSVAALVPKAELEGDMGDSQMALQARLMSKALRRLTHSLN 255 Query: 185 QSNTLLIFINQIRMKIGVMFG---NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 SN LLIFINQ R K+ G E T GGNALKFYASVRL +R+ ++ G+ GS Sbjct: 256 SSNCLLIFINQTRAKLNTYGGGGPTAEVTAGGNALKFYASVRLQVRKKEQLRRGDVPFGS 315 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 VKVVKNK++ PF+ AEF I YG+GI+ GE++DLGVK L+ ++G+WYSY+G+ Sbjct: 316 SVIVKVVKNKVSPPFRTAEFDIEYGKGISRDGEVLDLGVKHGLLGQSGSWYSYEGKNFAN 375 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF 353 G+ A +L+++ + + ++E +L P ++ D D +G + + F Sbjct: 376 GREGAKKYLQEHTDLTDALVVAIKEKILGQPRASGDL---DDDGFIQEEDAF 424 >UniRef50_C1TRT4 Protein recA n=2 Tax=Synergistaceae RepID=C1TRT4_9BACT Length = 386 Score = 358 bits (919), Expect = 1e-97, Method: Composition-based stats. Identities = 168/349 (48%), Positives = 239/349 (68%), Gaps = 8/349 (2%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++ L A+ I +FG GSIMRLG+D +VE I TG L LD+ALG GG P GRIVE+ Sbjct: 9 TREDILEVAIDDIRSKFGDGSIMRLGDDTLANVEVIPTGILPLDVALGIGGFPRGRIVEV 68 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 +GPE SGKTTL L +A AQ+ G AFIDAEHALDP A+ LGV++ +L +QPD+GEQ Sbjct: 69 FGPEGSGKTTLALHALAEAQKAGGVAAFIDAEHALDPRLAQSLGVNVADLYIAQPDSGEQ 128 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 AL I + L RSGAVD++VVDSVAALTP+AEI+G+IGD+ +GL AR+MS ++R+L + + Sbjct: 129 ALYILETLVRSGAVDIVVVDSVAALTPQAEIDGKIGDTQVGLQARLMSYSLRRLTSAISK 188 Query: 186 SNTLLIFINQIRMKIGVMF--GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 SN++++FINQ+R I + G ETTTGG ALKFY SVR++++R +V +G++ +G E Sbjct: 189 SNSIVVFINQLRATISTGYSRGPSETTTGGRALKFYTSVRVEVKRGKSVTKGDDTIGHEL 248 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 +KVVKNK A PF+ A ++YG+GI VD+ + +I++ G+W +YKGE +GQGK Sbjct: 249 WIKVVKNKQAPPFRTAHTTLVYGKGIPNNMSTVDMAIDAGVIKRKGSWLAYKGETLGQGK 308 Query: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNED 352 N +L+++P+ +EI K V + + D + +++ED Sbjct: 309 DNVANYLEEHPDLNEEIVKAVLD------EAAKGLGFDIGKDPKDSDED 351 >UniRef50_B5YLR6 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B5YLR6_THAPS Length = 428 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 190/352 (53%), Positives = 249/352 (70%), Gaps = 6/352 (1%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 ++ K AL L +IE+ +G+GSI++LG+ M V+ I +GSL+LD+ALG GG P GR++ Sbjct: 66 NKAKLSALEGVLSRIERNYGRGSIVKLGDADRMVVDCIGSGSLTLDVALG-GGYPKGRVI 124 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 EIYGPESSGKTTL L +A AQ+ G AF+DAEHALDP YA LGVDID+LL SQPD+G Sbjct: 125 EIYGPESSGKTTLALHALAEAQQSGGIAAFVDAEHALDPAYAAALGVDIDSLLVSQPDSG 184 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 E AL+I D L RS AVDVIVVDSVAAL P+AE+EG++ D +GL AR+MS+A+RK+ +L Sbjct: 185 EMALDIVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDMQVGLQARLMSKALRKITSSL 244 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 S +IF+NQ+R K+GV++G+PE T+GGNALKFYASVRLD RR + + +G Sbjct: 245 SLSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRREVLPDN---MGIRA 301 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 +VKVVKNK+AAPFK E IL+GEGI+ G L+D + ++++ G+WYSY+ QG+ Sbjct: 302 KVKVVKNKVAAPFKVIELDILFGEGIDQMGCLLDAALDLDVVQRKGSWYSYQDSNFAQGR 361 Query: 304 ANATAWLKDNPETAKEIEKKVRELLLSN--PNSTPDFSVDDSEGVAETNEDF 353 NA+ +LK N E AK +EK+VRE LLS P D E E EDF Sbjct: 362 YNASVYLKGNAEVAKRMEKEVREALLSAKLPKGALGEGGGDVEDYVEMEEDF 413 >UniRef50_Q9ZUP2 DNA repair protein recA homolog 3, mitochondrial n=79 Tax=cellular organisms RepID=RECA3_ARATH Length = 430 Score = 345 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 184/330 (55%), Positives = 238/330 (72%), Gaps = 5/330 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVE 64 K+ AL AL QI FGKGSIM LG S +V STGS +LD+ALG GGLP GR+VE Sbjct: 57 KKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVE 116 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYGPE+SGKTTL L VIA AQ++G TC F+DAEHALD A+ +GV+ +NLL SQPD GE Sbjct: 117 IYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGE 176 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QAL + D L RSG+VDVIVVDSVAAL PK E+EGE+GD+HM + AR+MSQA+RKL+ +L Sbjct: 177 QALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLS 236 Query: 185 QSNTLLIFINQIRMKI---GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 S TLLIFINQ+R K+ G G E T GGNALKFYAS+RL+I+RIG +K+GE GS Sbjct: 237 LSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGS 296 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 + VK+VKNK+A PF+ A+F++ +G+GI E++DL +K K I K G +Y+ G+ Sbjct: 297 QVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY-H 355 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSN 331 GK +LK N +E+ KK+++ L+++ Sbjct: 356 GKEALKRFLKQNESDQEELMKKLQDKLIAD 385 >UniRef50_B7FQ63 Chloroplast-targeted nuclear-encoded recombinase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQ63_PHATR Length = 431 Score = 342 bits (878), Expect = 9e-93, Method: Composition-based stats. Identities = 182/349 (52%), Positives = 245/349 (70%), Gaps = 6/349 (1%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 +D K+ AL L QIE+ +G+GSI++LG+ +M V+TI +GSL+LD ALG GG P GR+ Sbjct: 75 MDPAKRAALDGVLNQIERNYGRGSIVKLGDADNMKVDTIGSGSLTLDAALG-GGFPKGRV 133 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 VEIYGPESSGKTTL L IA +Q+ G T AF+DAEHALDP YA KLGVDIDNLL SQPD+ Sbjct: 134 VEIYGPESSGKTTLALHAIAESQKVGGTAAFVDAEHALDPAYAAKLGVDIDNLLVSQPDS 193 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 GE AL++ D L RS AVDVIVVDSVAAL P+AE+EG++ D+ +GL AR+MS+AMRK+ G+ Sbjct: 194 GEMALDVVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDAQIGLQARLMSKAMRKITGS 253 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 L S +IF+NQ+R K+GV++G+PE T+GGNALKFYASVRLD RR + G Sbjct: 254 LALSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRKEIL---PENSGIR 310 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 +VKVVKNK+AAPFK +L+G GI+ G ++D + +IE+ G+W+SYKG+ + QG Sbjct: 311 VKVKVVKNKVAAPFKIVNLDLLFGSGIDQIGCMLDAAMDLNIIERRGSWFSYKGQNMAQG 370 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351 + N +K + + ++E +VR L + D+E + + Sbjct: 371 RINVVEMIKSDTKLMAQLETEVRLALSEMGKDIKPTA--DTESLETLED 417 >UniRef50_C0R0F2 Protein recA n=3 Tax=Bacteria RepID=C0R0F2_BRAHW Length = 435 Score = 342 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 175/327 (53%), Positives = 241/327 (73%), Gaps = 3/327 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + K +A+ A QI K++G GS MRLG +++++V+ ISTG+L+LD ALG GG+P GRI+E Sbjct: 22 DGKSEAIEAITDQINKKYGPGSFMRLGSNKTVNVDVISTGALTLDHALGVGGVPRGRIIE 81 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYG E+SGKTTLTL +IA AQ+ G AFIDAEHALDP+YA LGVDIDNL SQP++GE Sbjct: 82 IYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGE 141 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +ALEI + + S A D++VVDSVAAL KAE+ G+IGD+H+ L AR+MS A+RKL + Sbjct: 142 EALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIIS 201 Query: 185 QSNTLLIFINQIRMKI---GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 +NT +IFINQ+R I G G ETTTGG ALKFY+SVRLDIRR +K+G++ +G Sbjct: 202 NTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDDTIGH 261 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 + ++KVVKNK+++PFK +I++G+GI+ G L+DL ++ K+I ++GAW+ Y GE+I Q Sbjct: 262 KVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQ 321 Query: 302 GKANATAWLKDNPETAKEIEKKVRELL 328 GK L +P+ E+E ++RE L Sbjct: 322 GKEKVRELLASDPKMRMELEIQIRETL 348 >UniRef50_Q8EVC7 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCPE Length = 329 Score = 336 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 148/323 (45%), Positives = 215/323 (66%), Gaps = 3/323 (0%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 +QKAL A+ +IEK+FGK + + S D + I +GS+ LD A+G GG P G+I+EI Sbjct: 5 TEQKALELAIKEIEKKFGKET---FSQSESFDNQVIKSGSILLDNAIGVGGYPKGKIIEI 61 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YG ESSGKTT+ LQ + +EG + A+IDAE ++D Y LG+D LL + P+ GEQ Sbjct: 62 YGNESSGKTTIALQCVKECIKEGGSVAYIDAECSIDSKYLSHLGIDPTKLLVATPEYGEQ 121 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 A I DAL ++ VD+IVVDSVAAL PK +IE + D MG ARMMS+ ++ L +L + Sbjct: 122 AFSIIDALIKTNMVDLIVVDSVAALVPKNDIESSMEDQSMGTHARMMSKGLKILQTSLSK 181 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245 T +IFINQ+R KIGVMFGN E TTGG ALKF++++RLD+RR +K G +V+G +++ Sbjct: 182 HKTTVIFINQVREKIGVMFGNNEITTGGRALKFFSTLRLDVRRSELIKSGTDVIGIRSKI 241 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN 305 V KNK+A PFK I + +G + E++D ++ ++I+K+G+W+ Y K+ QG+ N Sbjct: 242 TVTKNKVAPPFKNCFVDIFFNKGFDPTKEIIDFAIEYEIIKKSGSWFYYNETKLAQGRNN 301 Query: 306 ATAWLKDNPETAKEIEKKVRELL 328 ++LK+N E EI+K V + + Sbjct: 302 LDSYLKENNEIYDEIKKLVFDEI 324 >UniRef50_D1IJ27 Whole genome shotgun sequence of line PN40024, scaffold_252.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1IJ27_VITVI Length = 398 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 140/329 (42%), Positives = 205/329 (62%), Gaps = 5/329 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVE 64 K AL A+ ++ FG+ S++ L S ISTGSL LD+ALG GGLP GRIVE Sbjct: 68 EKDTALRLAISRLAGDFGRESMLSLQRFFVSRHAPVISTGSLKLDLALGIGGLPKGRIVE 127 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYG E+SGKTTL L +I AQ+ G CA++D E+A++P +A +GV++DNLL S PD+ E Sbjct: 128 IYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDNLLISPPDSAE 187 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 L + + L +SG++DVIVVDSVAAL P+ E++ IG ++ + +++M+QA+RK+ +L Sbjct: 188 NLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQALRKIHYSLC 247 Query: 185 QSNTLLIFINQIRMKIGVMFGN---PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 +S TL+IF+NQ+R + G E T GGNAL+FYA+VRL + R G ++ + V G Sbjct: 248 RSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGLLRTEDKVTGL 307 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 V+VVKNK+A K+A+ I +G GI F E+++L + +I K G+ Y +GE Sbjct: 308 GVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSKYIIEGEAF-N 366 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLS 330 K A ++ N + I +R L Sbjct: 367 NKQEAEQYMAQNSGVLERIVSFLRSHLFE 395 >UniRef50_B1AI69 Protein recA n=15 Tax=Ureaplasma RepID=RECA_UREP2 Length = 334 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 128/314 (40%), Positives = 198/314 (63%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 74 + +E +F K S E + + ISTGS+ +D G G+P+G+I EIYG ESSGKT Sbjct: 13 IATLETKFAKSSYFIADEIKDEKINAISTGSIHIDQITGINGIPVGKITEIYGNESSGKT 72 Query: 75 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 134 T+ LQ IA Q+ G T +D E + D YA+ L VD+ L+ +QP TGEQA ++ + L Sbjct: 73 TIALQTIAECQKTGGTVVLLDLEGSFDINYAKSLKVDLTKLIITQPQTGEQAFDMIETLI 132 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 ++ ++D+IV+DSVAA+ P++E + + ++ MG AR+MS+ +RK+ + +S T +IFIN Sbjct: 133 KTNSIDLIVIDSVAAMLPESEYQANMNEALMGAHARLMSKGLRKIQPLINKSKTAIIFIN 192 Query: 195 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 Q+R KI FGNPE TTGG ALKFYAS+R++ ++ +KEG N +G +T+V VKNK+A Sbjct: 193 QLREKINTFFGNPEMTTGGKALKFYASLRIETKKADLIKEGINKIGIKTKVTTVKNKLAP 252 Query: 255 PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP 314 P + I +G G ++ E++D ++ +++K G+W+ + KIGQG+ L N Sbjct: 253 PLQTCFIDIFFGSGFDYNNEIIDFAIQYGVLKKNGSWFYFNDNKIGQGREQLKNTLSKNN 312 Query: 315 ETAKEIEKKVRELL 328 E +I +K E + Sbjct: 313 ELFIQISEKTLEFV 326 >UniRef50_Q59486 Protein recA, plasmid n=3 Tax=Lactococcus lactis RepID=RECA2_LACLA Length = 341 Score = 312 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 135/324 (41%), Positives = 210/324 (64%), Gaps = 3/324 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 E K+ A+ A IEK+FG +I+ S V+ + +G LSLD A+G GG P GR++E Sbjct: 18 EEKKLAILKATQSIEKKFGSNTILNEEGKASQHVQALPSGILSLDCAIGIGGYPKGRLIE 77 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 ++G ESSGKTT+ LQ +A Q+ G A+IDAE++LD YA LGV D+L+ +QPDTGE Sbjct: 78 LFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSDSLIFAQPDTGE 137 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +A + + R+GA D+IVVDSVAALTP +EI+G G A+MMS+ + +L G + Sbjct: 138 EAFYMINEFVRTGAFDLIVVDSVAALTPASEIDGV---KMPGQQAKMMSEQLSQLVGKVN 194 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 Q+ T++IFINQIR + +F N ETT GG+ALKFY+SVR++++ +K+G + +G +T Sbjct: 195 QTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTT 254 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 + VKNK+++P+K+ ++G+G + ++V ++ +++K G WYS+ G+K+G+G Sbjct: 255 LHTVKNKVSSPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNGQKLGRGIF 314 Query: 305 NATAWLKDNPETAKEIEKKVRELL 328 +L +P ++ RE L Sbjct: 315 GVKEYLSHHPSVFNALDNLTREAL 338 >UniRef50_Q8RY99 DNA repair protein recA homolog 2, mitochondrial n=3 Tax=core eudicotyledons RepID=RECAM_ARATH Length = 389 Score = 310 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 139/328 (42%), Positives = 201/328 (61%), Gaps = 5/328 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 K AL AL Q+ F K S + L R V ISTGSL+LD+ALG GGLP GR+VE Sbjct: 61 EKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPKGRMVE 120 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 +YG E+SGKTTL L +I AQ+ G CA++DAE+A+DP A +GV+ + LL S+P + E Sbjct: 121 VYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPSSAE 180 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 + L I D L +SG+VDVIVVDSVAAL P+ E++ +G+ + +R+M+QA+RK+ ++ Sbjct: 181 KMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHYSVG 240 Query: 185 QSNTLLIFINQIRMKIGVMFGNP---ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 S TL++F+NQ+R + P E T GGNAL F+A++RL + R G +K + G Sbjct: 241 YSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKISGL 300 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 V+VVKNK+A K++E I +G G E+++L + +I + G Y +GE I + Sbjct: 301 NVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEVI-E 359 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLL 329 GK A +L +N E + +R L Sbjct: 360 GKDAAEKYLVENKEALDTVVAILRNQLF 387 >UniRef50_Q6ASS3 DNA repair protein recA, putative n=2 Tax=cellular organisms RepID=Q6ASS3_ORYSJ Length = 395 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 154/347 (44%), Positives = 208/347 (59%), Gaps = 44/347 (12%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 QKAL AA+ I FGKGS+ RLG VET +G L+LD ALG GGLP GR+VE+YG Sbjct: 89 QKALDAAMNDINSSFGKGSVTRLGSAGGAFVETFPSGCLTLDFALG-GGLPKGRVVEVYG 147 Query: 68 PESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 127 PESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVDI+NL+ Sbjct: 148 PESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLI----------- 196 Query: 128 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 187 GEIG MGL AR+MSQA+RK++GN ++ Sbjct: 197 ------------------------------GEIGMQQMGLQARLMSQALRKMSGNASKAG 226 Query: 188 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSETRV 245 L+F+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR IG +K +G+ VG + RV Sbjct: 227 CTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDEDVGVKVRV 286 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN 305 +V K+K++ P+KQAEF+I++GEG++ G ++D +++ K G+WYSYK ++GQG+ Sbjct: 287 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEMRLGQGREK 346 Query: 306 ATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNED 352 A +L+++P EIEK VR ++ + S E D Sbjct: 347 ALQYLRESPTICDEIEKAVRAMIPEGARHMSLLAFGRSSLTEEEQVD 393 >UniRef50_P47581 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCGE Length = 340 Score = 296 bits (757), Expect = 9e-79, Method: Composition-based stats. Identities = 142/312 (45%), Positives = 206/312 (66%), Gaps = 2/312 (0%) Query: 25 GSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 84 S ++ ++ETISTGSL+LD ALG+GGLP+GRIVE+YG ESSGKTT+ L +A+ Sbjct: 25 TSFDFFDAKKNSEIETISTGSLNLDEALGSGGLPLGRIVELYGNESSGKTTIALNAVASF 84 Query: 85 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 Q+ GKT +IDAE ALD YA+ +G+D++ LL + P GE A + ++L ++ + +IV+ Sbjct: 85 QKAGKTACYIDAEGALDLAYAKSIGIDLNKLLIAHPRHGENAFALIESLIKTNKISLIVI 144 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DSVAAL PK E+EG I + +GL ARMMS+ +R++ L S T ++FINQ+R K GVMF Sbjct: 145 DSVAALIPKQELEGTIEEQTIGLHARMMSKGLRRIQSILPDSKTCVLFINQLREKPGVMF 204 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEG-ENVVGSETRVKVVKNKIAAPFKQAEFQI 263 GN E TTGG AL+FY+S+R++ +R+ +K+ N VG +T+V V KNKIA PF A +I Sbjct: 205 GNNEVTTGGKALRFYSSLRMEAKRVELLKDKFNNYVGIKTKVMVSKNKIAKPFGVAILEI 264 Query: 264 LYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKK 323 ++ G E++DL +K ++ +AG YS+ E I GK L + P ++I K+ Sbjct: 265 MFNRGFVHEHEVIDLALKFNVVVRAGNSYSFNNESIAVGKEKLLNVLSEKPALFEQI-KE 323 Query: 324 VRELLLSNPNST 335 + L+N NS Sbjct: 324 LTVQQLANKNSF 335 >UniRef50_B9EWE7 Putative uncharacterized protein n=3 Tax=Poaceae RepID=B9EWE7_ORYSJ Length = 392 Score = 295 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 132/330 (40%), Positives = 194/330 (58%), Gaps = 7/330 (2%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVE 64 K+ L+ A+ Q+ F + S + L ISTGSL LDIALG GGLP GR+VE Sbjct: 64 EKESTLSVAVSQLASDFDRESNLCLERFSRTRRTPVISTGSLKLDIALGIGGLPKGRMVE 123 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 ++G E+SGKTTL L V+ AQ++G CA+IDAE+A +P A +GV+++ LL +QPD+ E Sbjct: 124 LFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPDSAE 183 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +L I + L G++DV+VVDSVAAL P+ E+EGEI + + +R+M++A+RK+ L Sbjct: 184 NSLSIVNTLV-GGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQSRLMTRALRKIQHTLS 242 Query: 185 QSNTLLIFINQIRMKIGVM---FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 +S TL+IF+NQ+R K+ E GGNAL FYA+VR+ R G Sbjct: 243 RSETLIIFVNQVRTKLSSNQTPGIFKEVACGGNALGFYAAVRMRTSRRELRYNEAQATGI 302 Query: 242 ETRVKVVKNKIAA-PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 300 V+++KNK+A K+A I +G+GI + E+++L +I K + Y GE + Sbjct: 303 GISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWINGEFL- 361 Query: 301 QGKANATAWLKDNPETAKEIEKKVRELLLS 330 KA A +L++N A EI +R Sbjct: 362 PNKAEAEKFLRENAAVADEICGTMRRQFFE 391 >UniRef50_Q3F0X4 RecA protein n=2 Tax=Bacillus thuringiensis RepID=Q3F0X4_BACTI Length = 362 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 129/340 (37%), Positives = 195/340 (57%), Gaps = 17/340 (5%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + + I KQ G+ +I + ++ S+GSL++D+ALG GG+ GRI+E +G Sbjct: 3 IEKLMSTINKQLGEDTI-GYSVNTGPTIKLFSSGSLTMDLALG-GGVANGRIIEYFGNSM 60 Query: 71 SGKTTLTLQVIAAAQREG-KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEI 129 +GKTTL IA QR+ AFID EHA++ A++ GVD+D L+ P T E A++I Sbjct: 61 AGKTTLMFLHIAEVQRKNEGYVAFIDMEHAMNKELAQQYGVDLDKLIYVNPKTAENAVDI 120 Query: 130 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 189 D+L RSG V +I VDSV+A+ P +E MGL AR MS M+KL G + + Sbjct: 121 ADSLIRSGEVRLIAVDSVSAMVPTKIVESSAEQQTMGLLARFMSTTMQKLTGIAYEHDCT 180 Query: 190 LIFINQIRMKIGVM--FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 + FINQIR KIG G P TT+GG AL FYAS R+ ++ +K+G +++G ++KV Sbjct: 181 VGFINQIREKIGGFSPAGTPTTTSGGRALPFYASQRIQVKMGEYIKDGNDIIGHWVKIKV 240 Query: 248 VKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ------ 301 VKNKIA PFK+A F ++YG G++ E+ + + ++K G W E+ G+ Sbjct: 241 VKNKIAIPFKEAAFPLIYGHGVDRIDEVAQVAILAGFVQKNGGWCRIIDEETGEIRQHKG 300 Query: 302 ------GKANATAWLKDNPETAKEIEKKVRELLLSNPNST 335 G+A A+L ++ + A E+E K+R + + P+ Sbjct: 301 IELKFNGQAKLVAFLHEHKDLAAELEAKIRGVEVELPDGE 340 >UniRef50_A0MN30 RecA/RadA recombinase n=1 Tax=Thermus phage phiYS40 RepID=A0MN30_9CAUD Length = 339 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 130/323 (40%), Positives = 199/323 (61%), Gaps = 12/323 (3%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + + K+F K I E + E +STG L++D+ALG GG+PMG+I+E+YG ES Sbjct: 6 IKQIISSYAKKFSKEEIYTGQELKQTKEEIVSTGILTVDLALGIGGIPMGKIIEVYGQES 65 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 130 SGKTT +L I+ Q+ K CAFIDAE++ DPI+A LGV++D LL + ++ E++LE Sbjct: 66 SGKTTFSLITISQMQKANKICAFIDAENSFDPIWAETLGVNLDELLLIEANSLEESLEKL 125 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + L G V +V DS+ A ++ + GDS +G+ AR++S A+ KL ++Q+ + Sbjct: 126 EFLINQG-VKYVVYDSIVAPPTVSQNNADYGDSLVGVRARILSMALSKLMPIIRQNKATI 184 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 +FINQIR KIGV +GNPETT GG ALKF++S+RL++R+ +K+ + +G E VKV KN Sbjct: 185 MFINQIREKIGV-YGNPETTPGGRALKFFSSLRLNMRKK-PIKDEDGEIGDEVHVKVEKN 242 Query: 251 KIAAPFKQAEFQILYG--EGINFYGELVDLGVKEKLIEKAGAWYS---YKGEKIGQGKAN 305 K A P ++A+F + Y I++ L L L++K+GAWY EK G Sbjct: 243 KFAPPMRKAKFLLFYDGSYTIDYPEILSQL----GLVKKSGAWYKEQITGEEKTFHGAIQ 298 Query: 306 ATAWLKDNPETAKEIEKKVRELL 328 +K+N A+ +++K+RE + Sbjct: 299 LIEEIKNNKPFAELVDQKIREKI 321 >UniRef50_P35901 Mle recA intein n=1019 Tax=root RepID=RECA_MYCLE Length = 711 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 134/205 (65%), Positives = 164/205 (80%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 MA +++KAL A+ QIEK +GKGS+MRLG++ + I TGS++LD+ALG GGLP G Sbjct: 1 MAQVPDREKALELAMAQIEKNYGKGSVMRLGDEMCQPISVIPTGSIALDVALGIGGLPRG 60 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 RIVEIYGPESSGKTT+ L +A AQ G AFIDAEHAL+P YA+KLGVD D+LL SQP Sbjct: 61 RIVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQP 120 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 DTGEQALEI D L RSGA+D++V+DSVAAL P+AE+EGE+GDS++GL AR+MSQA+RK+ Sbjct: 121 DTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSYVGLQARLMSQALRKMT 180 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFG 205 G L S T IFINQ+R KIGVMFG Sbjct: 181 GALSNSGTTAIFINQLREKIGVMFG 205 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 96/266 (36%), Positives = 149/266 (56%), Gaps = 19/266 (7%) Query: 70 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLC-SQPDTGEQALE 128 SG+ + + + R D H LD + R++G +L S T + Sbjct: 440 GSGRIEICVDAMTEGTRVRLRDYLCDT-HGLD-VRLREVGSAGKAVLVFSTAATAKFQSL 497 Query: 129 ICDALARSGAVDVIVVDSVAALTPKAEIEGEI-----GDSHMGLAARMMSQAMRKLAGNL 183 I +A S ++ P+ G + + + AR++ ++ ++ Sbjct: 498 IAPYVAPSMEYKLL---------PQFRGRGSVTPQFVEPTQQLVPARVLDVHVKLSTRSM 548 Query: 184 KQSNTLLIFINQIRMKIGVMFGN-PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 + + + N GVM N PETTTGG ALKFYASVR+D+RRI +K+G + VG+ Sbjct: 549 NRFDIEVEG-NHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVRRIETLKDGVDAVGNR 607 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 TRVK+VKNK++ PFKQAEF ILYG+GI+ G L+D+GV++ + K+G+W++Y+GE++GQG Sbjct: 608 TRVKIVKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFVRKSGSWFTYEGEQLGQG 667 Query: 303 KANATAWLKDNPETAKEIEKKVRELL 328 K NA +L +N + A EIEKK++E L Sbjct: 668 KENARNFLLENADVANEIEKKIKEKL 693 >UniRef50_Q05FN0 Protein recA n=1 Tax=Candidatus Carsonella ruddii PV RepID=Q05FN0_CARRP Length = 296 Score = 263 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 120/293 (40%), Positives = 186/293 (63%), Gaps = 4/293 (1%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 +VE ISTGSL++D LG GGLP GRI+EIYG ESSGKTT +I AQ+ G CA+ID Sbjct: 8 KNVEFISTGSLNVDFILGIGGLPYGRIIEIYGQESSGKTTFAFSIIKEAQKVGDICAYID 67 Query: 96 AEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 155 EH +D Y LG+++ LL QP+ GE+ EI L S V +I++DS+AA+ P+ E Sbjct: 68 VEHCIDVNYIENLGINLKTLLIFQPENGEKVFEISQKLINSTYVKLIIIDSIAAIIPELE 127 Query: 156 IEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNA 215 I D+++G +R +S+ ++K+ L+++N LLI INQ+R+KI + N E +TGGNA Sbjct: 128 IYN--NDNNIGSHSRFLSKNLKKIIPLLRKNNVLLILINQVRIKISNFY-NKEISTGGNA 184 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 275 +KFY+S+R++++RIG +K N++G E +V V+KNK++ P++ + ++Y GI E+ Sbjct: 185 VKFYSSIRIELKRIGFLKSKNNIIGQEIKVNVLKNKLSKPYRDTKIYLIYSYGIYKILEI 244 Query: 276 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 328 ++ G+K LI+ + + E K N L N + K+IE +R ++ Sbjct: 245 INFGLKFNLIKIIKKKFFLENEYF-NNKKNLIKKLMFNKKLLKKIESDIRSMI 296 >UniRef50_A7KV38 RecA n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KV38_9CAUD Length = 457 Score = 245 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 111/384 (28%), Positives = 194/384 (50%), Gaps = 40/384 (10%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 E K+K + I K G ++ +D + + + T S +++ G GG+P GRI E Sbjct: 22 EEKRKIAMKLMDGINKTAGSTAV-GFAKDVAKKLTFLPTPSEEINVMTG-GGIPRGRITE 79 Query: 65 IYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIYARKL-GVDIDNLLCSQPD 121 I+G SSGKT+L L+ I Q A++++E + DP YAR + G+D+D L+ Sbjct: 80 IFGNNSSGKTSLCLETIGEDMEQDPDALWAWLESEESFDPDYARDVHGIDLDRLIYVDIS 139 Query: 122 T--GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179 E++++ + L RSG + VV+SVA L PK E+E ++ S + L ARMMS+ MRK Sbjct: 140 LKGAEESIDRLEVLMRSGILSGFVVNSVAGLVPKREVETDLAQSDIALQARMMSKLMRKW 199 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV 239 + + + IFINQ+R + FG+P TTGG AL FYAS+R + ++ +++ + + Sbjct: 200 TALIGKKDLYAIFINQLRTDVNSRFGDPNVTTGGRALAFYASLRFGMNKL-KLQDSDPIT 258 Query: 240 ---GSETRVKVVKNKIA--APFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSY 294 G + +V KN+ P+K+ E+ ++YGEG++ E+++ ++ K+G+W+ Y Sbjct: 259 DDDGLKISARVAKNRCVYDNPYKKCEYYVIYGEGVDKLTEIMENVEPAGIMRKSGSWFYY 318 Query: 295 KGEKIGQ---------------------------GKANATAWLKDNPETAKEIEKKVREL 327 + E Q GK ++ DNP A+++ +++R Sbjct: 319 EKEDGEQIEAAEALVRKKDDPVPQMAKNVPLKFPGKTKFREFMTDNPWFAEQLRQEIRGK 378 Query: 328 LLSNPNSTPDFSVDDSEGVAETNE 351 + D+ + + E + Sbjct: 379 VKQGELLPKYQDADEMKDIEELEK 402 >UniRef50_A0A7C2 RecA recombinase n=1 Tax=Microcystis aeruginosa phage Ma-LMM01 RepID=A0A7C2_9CAUD Length = 354 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 100/323 (30%), Positives = 167/323 (51%), Gaps = 18/323 (5%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 96 I +G SLD LG GG P+G+IVEI G S GKTTL Q ++ Q +G A++D Sbjct: 39 PTTFIPSGIFSLDYVLG-GGWPVGKIVEIAGETSVGKTTLMKQCVSLLQAKGYMAAWLDH 97 Query: 97 EHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 156 E + + YAR +G+ +D + +PDTGE+ ++ L SG V ++V+DSVA + E+ Sbjct: 98 EKSFEVGYARMMGMQMDQIAMFRPDTGEEGMDSLITLLGSGLVKIVVIDSVANMISAVEV 157 Query: 157 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 216 E D+ + AR++S+ + ++ ++ ++ INQ R K+G +G P +TGG AL Sbjct: 158 EKGSADATVAQLARLLSKKLPQVVNAASKTGATVVLINQYRTKVGS-YGAPVGSTGGKAL 216 Query: 217 KFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE--------- 267 + A+V+L + R +K+ + G VK KN++A PF++AE +L Sbjct: 217 AYNAAVQLRLGRGDPLKQRGVITGMTITVKNTKNRVAIPFREAELDLLLPYTGPNGDLLA 276 Query: 268 GINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVREL 327 G++ G++V VK ++ ++GA+Y+ QG A A + N I ++ E Sbjct: 277 GVDLVGDIVRQAVKTGIVSRSGAFYTLPDGSKFQGLAAVRAGI--NQSVLDSIYSQLSEY 334 Query: 328 LLSNPNSTPDFSVDDSEGVAETN 350 + + + DD+E Sbjct: 335 -----DKQDNAAGDDTEETINDE 352 >UniRef50_C1KFR4 Putative recombinase A n=1 Tax=Lactobacillus phage Lb338-1 RepID=C1KFR4_9CAUD Length = 400 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 150/355 (42%), Gaps = 41/355 (11%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 + + T D +G GG+P GRI EIY PE GK+T + + A G ++DAE Sbjct: 35 DMLPTFIPQWDYIMG-GGIPFGRITEIYAPEQVGKSTFMIYLNRVASALGADTFWLDAEG 93 Query: 99 ALDPIYARKLGVDIDNLLCSQPD-------TGEQALEICDALA--------RSGAVDVIV 143 D +LGVD + PD EQ + + R +++ Sbjct: 94 TSDGDRMEELGVDPAHTFIYSPDKNNGESLNVEQVGATIENIINTYKDDESRKDTPLLVI 153 Query: 144 VDSVAALTPKAEIEGEIGDS-HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 202 DS+ +AE + G+ G A +++ +RK+ L+ N L+ INQ+R Sbjct: 154 WDSIGGTITQAEQNTDFGEEGQRGRQAAAVTKLVRKITPMLRDVNIALVAINQVRANQDA 213 Query: 203 M--FGNPETTTGGNALKFYASVRLDIRRIGAVKE------GENVVGSETRVKVVKNKIAA 254 M + GG ALK ++RL++ + +K + G +K+ K+K + Sbjct: 214 MNKYAPKTIAGGGEALKHADALRLELAKSTQIKGKYKGESDDTYEGHLITMKIDKSKQSR 273 Query: 255 PFKQAEFQILYG---------EGINFYGELVDLGVKEKLIEKAGAWYSY---KGEKIGQG 302 P ++A+ +L G GI++ + + LI+ +G + Y GE+I Sbjct: 274 PHQKAQAALLAGWLLKNNAYLNGIDYEYNMYMDAKELGLIKASGGYRKYTTLAGEEINAY 333 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLS--NPN--STPDFSVDDSEGVAETNEDF 353 + + LKD+P KE+ + E + + +P + + D GV E + F Sbjct: 334 EVDFLKRLKDDPNLTKELFIRSMETIWTEGHPRYLDNKNLNCDAWPGVKELRKYF 388 >UniRef50_B9H9J7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9H9J7_POPTR Length = 335 Score = 218 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 110/328 (33%), Positives = 157/328 (47%), Gaps = 52/328 (15%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVE 64 K AL AL Q+ +FG+ S++ L S ISTGSL LD+ALG GGLP GR+VE Sbjct: 58 QKDNALRLALTQLAGEFGRESMLSLQRFFSSRRASIISTGSLKLDLALGIGGLPKGRMVE 117 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYG E+SGKTT+ L +I AQ+ G CAF+D E+A+D A+ +GV+ +NLL S+PD E Sbjct: 118 IYGQEASGKTTIALHIIKEAQKLGGYCAFLDVENAMDHSLAKSMGVNTENLLISRPDCAE 177 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 L + + L +SG+VDVI V + G + G A A+R Sbjct: 178 NLLSVVNTLTKSGSVDVI----VVDSVRTSLKSGRAEEVTCGGNALKFYSAVR------- 226 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 L + R G +K G+ V G Sbjct: 227 ---------------------------------------LRMIRTGLLKTGDKVTGLGVC 247 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 +VVKNK+A +AE I +G G F E+++L ++ LI+K G+ Y G ++ + Sbjct: 248 AQVVKNKLAPAMTKAEIGIQFGRGFCFESEVLELACEQSLIKKEGSSYVI-GREVFSNEH 306 Query: 305 NATAWLKDNPETAKEIEKKVRELLLSNP 332 A +L +N +I K+R LL Sbjct: 307 AAEQYLIENEGVLDQIVAKLRGKLLQRK 334 >UniRef50_C7T573 Protein recA n=1 Tax=Pseudomonas putida RepID=C7T573_PSEPU Length = 247 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 122/163 (74%), Positives = 139/163 (85%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 ++E + KAL AALGQIEKQFGKG++MR+GE + ISTGS+ LDIALG GGLP GRI Sbjct: 1 MNEQRNKALQAALGQIEKQFGKGAVMRMGEHERQAIPAISTGSMGLDIALGIGGLPKGRI 60 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 VEIYGPESSGKTTLTL VIA AQR+G TCAF+DAEHALDP YA KLGV++D+LL SQPDT Sbjct: 61 VEIYGPESSGKTTLTLSVIAEAQRQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDT 120 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 165 GEQALEI D L RS AVDVI+VDSVAAL PKAEIEGE+GD+H+ Sbjct: 121 GEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHV 163 >UniRef50_A8ASX5 Gp141 n=3 Tax=unclassified SPO1-like viruses RepID=A8ASX5_BPA51 Length = 414 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 37/333 (11%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 + + T LD LG GG+P GR+ EI G +SGK+TL + + A + +ID E Sbjct: 36 DKLPTFIPQLDYILG-GGIPFGRLTEIMGKNASGKSTLAVHLTKVALQLDCKVIWIDTEG 94 Query: 99 ALDPIYARKLGVDIDNLLCSQPDT-----------------GEQALEICDALARSGAVDV 141 DP +LGVD++ + QP E+ I +A + S V Sbjct: 95 TADPSRLSQLGVDVNKIFFVQPKKSKNAEVNKEDSITVEFVAERVEAILNAFSSSEQRIV 154 Query: 142 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 I+ DS+ EIE + G+ A+ M+Q +A + +S+ I INQ R ++G Sbjct: 155 IIWDSIGHTPSIKEIEQGVAGKQPGIKAKAMAQFATIIAPMVTKSHCAFIGINQARDEMG 214 Query: 202 VMFGNPETTTGGNALKFYASVRLDIRRIGAVKE---------GENVVGSETRVKVVKNKI 252 MFG + GGNAL +AS+RL++++ ++E VG + RV K+K+ Sbjct: 215 SMFG-AVDSPGGNALHHWASLRLEVKQASKIEEPMQNAFGTMDNVYVGHKLRVITKKSKV 273 Query: 253 AAPFKQAEFQILYGEGINFYGELVDLGVKEKL--IEKAGAWYSYKGEKIGQGKANATAWL 310 + P + AE +L G+ + + V K+ + K + SY + + K W+ Sbjct: 274 STPRQSAEMFLLSASGLQYEENIYRSCVDSKMYGLIKGLQYKSYIADDGKEYKMYGKDWV 333 Query: 311 -----KDNPETAKEIEKKVRELLLSNPNSTPDF 338 KD + KE+ +K+ +L+S P Sbjct: 334 PFLQSKDGEKIRKELFQKM--MLISFPTGYSPL 364 >UniRef50_C4Z5Y6 Protein recA n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z5Y6_EUBE2 Length = 336 Score = 213 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 155/332 (46%), Gaps = 19/332 (5%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + + ++ K++ K I+R D +E I S ++ L GG+P+GRI+E+ G Sbjct: 4 IDNLIAEVNKKY-KTDIIRKASDLK-GIEFIPYTSPMMNY-LTRGGVPVGRIIELVGLPQ 60 Query: 71 SGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT--GEQA 126 SGKTT L +I+ Q++ K C ++DAE+ +D + LGVD ++ QP++ GE+ Sbjct: 61 SGKTTTALDIISNFQKKYTDKYCVYLDAENTIDKEWGETLGVDWSKVILIQPESEYGEEL 120 Query: 127 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 L++ RSG + + V+DS + PKA E + + G + +M K K+ Sbjct: 121 LDMLLDYIRSGKIGLAVLDSAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCKKV 180 Query: 187 NTLLIFINQIRMKIGVMFGNPETTTG-------GNALKFYASVRLDIRRIGAVKEGENVV 239 + INQ+R IG + + G L F LD + N Sbjct: 181 ECTFLLINQLRENIGNPYKPFKIPCGTAIAHACSQILWFTKGSLLDEKYKEVSSGYANPS 240 Query: 240 GSETRVKVVKNKIAAPFKQAE-FQILYGEGINFYGELVDLGVKEKLIEKAGAWY----SY 294 G+ VKV KNK+ ++ + + + Y G++ + +DL + +I +AGAW+ Sbjct: 241 GNLVSVKVEKNKVTKNDRRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWFKAILKD 300 Query: 295 KGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 E+ QG + ++ E + + K+V E Sbjct: 301 GKEQKMQGFNGVQEFYYNDLEELEYLRKQVYE 332 >UniRef50_Q4Z9W4 ORF021 n=4 Tax=unclassified SPO1-like viruses RepID=Q4Z9W4_9CAUD Length = 418 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 149/334 (44%), Gaps = 41/334 (12%) Query: 30 LGEDRSMDVE-TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 L + D++ I T D LG GG+P+GR+ E+YG SGK+T + + A + G Sbjct: 29 LSDTNRADIKNVIPTMVPQYDYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLG 87 Query: 89 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQP------DTGEQALEICDALARS------ 136 +ID E D +LGVD+ L Q +T E ++E Sbjct: 88 VITIWIDIEGTADNNRMEQLGVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFN 147 Query: 137 ----GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 192 G V + DS+ A + EI+G I + MGL A + + + L +NT LI Sbjct: 148 EKIPGVPIVFIWDSLGATRTQKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIV 207 Query: 193 INQIRMKIG-VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV------GSETRV 245 INQ R + M+G+P +TGG A + AS+R+ + + +K+ + G R+ Sbjct: 208 INQARDDMNAGMYGDPIKSTGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRI 267 Query: 246 KVVKNKIAAPFKQAEFQILYGE------------GINFYGELVDLGVKEKLIEKAGAWYS 293 + K+K++ P ++AE +L GI+ + V+ LI K GAW + Sbjct: 268 ETKKSKLSRPGQKAEADLLSDYMVGKEDDPILLNGIDLEHTVYKEAVERGLITK-GAWRN 326 Query: 294 Y---KGEKIGQGKANATAWLKDNPETAKEIEKKV 324 Y GE+I A LKDN E E+ +V Sbjct: 327 YVTLNGEEIKLRDAEWVPVLKDNKELYLELFSRV 360 >UniRef50_B5LJG5 Gp193 n=9 Tax=unclassified Myoviridae RepID=B5LJG5_9CAUD Length = 371 Score = 210 bits (534), Expect = 6e-53, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 171/365 (46%), Gaps = 31/365 (8%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 L I K++G+G++MR E I +GS +LD A+G GGLP R +EI G E Sbjct: 5 QKLLDSINKKYGEGTMMRASEVPVHP--AIHSGSYALDYAIGIGGLPQDRTIEIGGGEGC 62 Query: 72 GKTTLTL----QVIAAAQREGKTCAFIDAEHALDPIYARKL----GVDIDNLLCSQPDTG 123 GKTTL L Q + EG++ +D EH L + R+L +D D +L +QPD Sbjct: 63 GKTTLALLAMVQFLTDPANEGRSALILDMEHKLTMSWVRELIGDELMDSDRVLYAQPDHI 122 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQA I L +G V ++ DS+ A ++ E + +G A+ + + + Sbjct: 123 EQATNIFVDLVSTGEVCYVLYDSIGGSAGMAVVQKEAEKAQVGGDAKAIGRLLNLANIYC 182 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR--------IGAVKEG 235 + L +FINQ R + T GG K+ +R+ ++ I + Sbjct: 183 SKYRCLGVFINQERDDMDGY--RRYMTPGGRKAKYMFILRIRLKASTKAEDKIIRKINGE 240 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQIL------YGEGINFYGELVDLGVKEKLIEKAG 289 E +G+ ++KN++AAPF+ A++ + +G GI+ E+V LG +I+ +G Sbjct: 241 ERQIGTLINATIMKNQLAAPFRSAKWNMYNVWTEEFGFGIDTTEEVVRLGTATGVIQGSG 300 Query: 290 AWYS---YKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGV 346 WY+ + G K+ QG A +K++P+ + ++ L + + + D+E Sbjct: 301 -WYTHPAFPGGKL-QGMKGIQAAVKEDPKLRDTLVSEILAALKGDEDLAASIAPIDTEAA 358 Query: 347 AETNE 351 ++ Sbjct: 359 EMMSQ 363 >UniRef50_C7F8K4 Recombination repair protein n=1 Tax=Bacillus phage Bcp1 RepID=C7F8K4_9CAUD Length = 407 Score = 209 bits (533), Expect = 8e-53, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 159/345 (46%), Gaps = 32/345 (9%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 + + +D G GGLP GR++E+ G S GK+T T V+ A G C ID E Sbjct: 41 DRLPLFLPKIDKIFG-GGLPFGRMIEVAGVPSGGKSTFTHHVMRVATALGCICVLIDVEG 99 Query: 99 ALDPIYARKLGVDIDNLLCSQPD--------------TGEQALEICDALARSGAVDVIVV 144 D LG+D +L QPD T E+ L++ V V V Sbjct: 100 TSDNERLTALGIDTSKVLVKQPDPDKGTALTVEEVGQTVEETLKLFGEKYPHVPV-VYVW 158 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM- 203 DSV + + E+E + G+ ++G A+ ++Q + K+ + QS +L I INQ+R IG Sbjct: 159 DSVGSTPSQVELEKDFGEQNVGARAKAITQFVTKVTPMVSQSKSLFIGINQVRDDIGGNP 218 Query: 204 FGNPETTTGGNALKFYASVRLDIRRIGAVKEG----ENVVGSETRVKVVKNKIAAPFKQA 259 GG A + A++R++I+ GA+ +G + +G VK K+K++ PF++A Sbjct: 219 MFKTYKVPGGKAWEHAATLRIEIKNRGAINKGSGVNKERLGHTMGVKTQKSKVSRPFQEA 278 Query: 260 EFQILYGEGINFYGELVDLGVKEKLIEK-AGAWYSYK---GEKIGQGKANATAWLK--DN 313 +L GI++ LV +G + +I K + Y Y G Q +A+ WL+ + Sbjct: 279 TGSLLADTGIDYEYNLVTMGDEAGIIGKPSNQSYEYVDQFGTVYKQNRASFIEWLRTPEA 338 Query: 314 PETAKEIEKKVRELLLSN-----PNSTPDFSVDDSEGVAETNEDF 353 +EI K+ ++ + N T D S + V + +F Sbjct: 339 QPVRQEILNKLIQIEFPDGYTALKNETLDISGWIDQVVPVISPEF 383 >UniRef50_Q8L1K7 Glutamine synthetase 1 (Fragment) n=8 Tax=Rhizobiales RepID=Q8L1K7_9RHIZ Length = 461 Score = 206 bits (524), Expect = 9e-52, Method: Composition-based stats. Identities = 110/160 (68%), Positives = 133/160 (83%), Gaps = 5/160 (3%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 ++E +F G+ ++ +++ET+ TGSL LDIALG GGLP GRI+EIYGPESSGKTT Sbjct: 307 KRVEVRFPLGA-----NEQVVEIETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 361 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 135 L L +A AQ++G CAF+DAEHALDP+YARKLGVD++NLL SQPDTGEQALEICD L R Sbjct: 362 LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 421 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 SGA+DV+VVDSVAALTP+AEIEGE+GDS GL AR+MSQA Sbjct: 422 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 461 >UniRef50_A4TT30 Recombinase n=19 Tax=Enterobacteriaceae RepID=A4TT30_YERPP Length = 358 Score = 203 bits (516), Expect = 7e-51, Method: Composition-based stats. Identities = 95/322 (29%), Positives = 157/322 (48%), Gaps = 41/322 (12%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA---GGLPMGRIVE 64 + ALA AL K+ G + I +G L+ A+ GG P GRIVE Sbjct: 5 KSALALALK---KKIGSNDEI------QKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVE 55 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDID----NLLCSQP 120 ++GP S+GKT L + +AQ++ F+D E++ D A G++ D + QP Sbjct: 56 VFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQP 115 Query: 121 DTGEQALEIC---------DALARSGAVDVIVVDSVAALTPKAEIEG------------- 158 DT E ++E+ + L A IV DS+A++ P ++ E Sbjct: 116 DTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKD 175 Query: 159 EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 218 ++ + AR S LA ++ N +IF+NQ+R KIGVMFG+P T+ GG++ KF Sbjct: 176 QLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKF 235 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG--EGINFYGELV 276 YASVR+ + +K+G+ +G + + +KNK+A PF + ++ + G++ LV Sbjct: 236 YASVRIRL-GASVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIESLV 294 Query: 277 DLGVKEKLIEKAGAWYSYKGEK 298 + ++E + K + G+K Sbjct: 295 EYMLEEGYLPKNASGRVEIGDK 316 >UniRef50_A4AAG4 RecA bacterial DNA recombination protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4AAG4_9GAMM Length = 181 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 112/155 (72%), Positives = 130/155 (83%) Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 MRKL +KQ+N L+IFINQIRMKIGVMFG+PETTTGGNALKFY+SVRLDIRRIGAVKEG Sbjct: 1 MRKLTATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEG 60 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYK 295 + VVG+ETRVKVVKNK+A PFKQAEFQI+YG GI E++D GVK LI+K+GAWY+YK Sbjct: 61 DEVVGNETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLNLIDKSGAWYAYK 120 Query: 296 GEKIGQGKANATAWLKDNPETAKEIEKKVRELLLS 330 G+KIGQGKANA +L+DNP EIE +R LL Sbjct: 121 GDKIGQGKANAAKFLEDNPALGSEIEGLIRSQLLD 155 >UniRef50_Q02AB2 Protein recA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AB2_SOLUE Length = 248 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 102/266 (38%), Positives = 149/266 (56%), Gaps = 24/266 (9%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 +E +Q+A+ L R+ S+G +LD ALG GGLP G++V Sbjct: 3 EEERQRAIWLKLA------------RMAPHSPARDTCFSSGFQALDEALG-GGLPRGQMV 49 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 E YGP GKTTL +Q+ A AQ G TCA+IDA+ D YA LG +D + +QPD+ Sbjct: 50 EFYGPSGCGKTTLAIQIAAHAQAGGLTCAWIDADRTFDAAYAAHLGAAVDRIPVAQPDSA 109 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 E+ LE+ AL SGAVD+++VDS AAL PK E+E IG GL +R++S +R L L Sbjct: 110 EEGLEVTRALIDSGAVDLVIVDSAAALVPKLELEAGIGYYSKGLHSRVLSSGLRNLRRAL 169 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 ++ ++F+NQ+R + G+ ET+ GG LK +A+VRL + + G+ Sbjct: 170 ARTGACVVFLNQVRNRPSG--GSGETSAGGPPLKLFAAVRLAL---------TPLEGTRL 218 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGI 269 R++V+KNK+AA E + + G G Sbjct: 219 RLRVLKNKVAAQTSGRELEWVRGSGF 244 >UniRef50_Q7Y594 UvsX RecA-like recombination protein n=3 Tax=unclassified T4-like viruses RepID=Q7Y594_BPR69 Length = 390 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 75/366 (20%), Positives = 141/366 (38%), Gaps = 38/366 (10%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAG---GLPM 59 + + K + + A+ ++ K + + + + T L+IALG GL Sbjct: 1 MSDLKSRLIKASTSKMTADLTKSKLFN-------NRDEVPTRIPMLNIALGGALNAGLQS 53 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARKLGVDIDNLLC 117 G + P KT L ++AA ++ C F D+E Y R +GVD+D ++ Sbjct: 54 G-LTIFAAPSKHFKTLFGLTMVAAYMKKYKDAICLFYDSEFGASESYFRSMGVDLDRVVH 112 Query: 118 SQPDTGEQ----ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL--AARM 171 + + EQ DA+ R V +I +DS+ K E E + + +G A+ Sbjct: 113 TPIQSVEQLKVDMTNQLDAIERGDKV-IIFIDSIGNTASKKETEDALNEKVVGDMSRAKA 171 Query: 172 MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 231 + R + L + + IN M+IG ++ P+ GG Y++ + Sbjct: 172 LKSLFRIVTPYLTIKDIPCVAINHTAMEIGGLY--PKEIMGGGTGILYSANTVFFISKRQ 229 Query: 232 VKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAW 291 VKEG + G + +K K++ + + GI+ + L+++ + + K A Sbjct: 230 VKEGTELTGYDFTLKAEKSRTVKEKSTFPITVNFDGGIDPFSGLLEMATEIGFVVKPKAG 289 Query: 292 YS---YKGEKIGQGKANATAW-------------LKDNPETAKEIEKKVRELLLSNPNST 335 + + E+ G+ +W L + IE K + +S+ Sbjct: 290 WYAREFLDEETGEMIREEKSWRAKATDCVEFWGPLFKHKPFRDAIETKYKLGAISSIKEV 349 Query: 336 PDFSVD 341 D D Sbjct: 350 DDAVND 355 >UniRef50_C8XUF9 UvsX RecA-like recombination protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUF9_9CAUD Length = 361 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 132/336 (39%), Gaps = 25/336 (7%) Query: 9 KALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA---GGLPMGRIVEI 65 +L + ++ K+ + + D STG +DIA GGL G I + Sbjct: 3 SSLMDRMLKVAKKHDDQASVLSQSDALEPSIICSTGIPLIDIAWSGRIDGGLISG-IKMM 61 Query: 66 YGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 G + KT L + A + C F D+E + Y +G+D+D +L D Sbjct: 62 VGDSRTFKTMFGLVDVKAYMDKFPDALCIFADSEKGANADYWTSMGIDMDRVLYVPIDNV 121 Query: 124 EQA---LEICDALARSGAVDVIVVDSVAALTPKAEIEGEI--GDSHMGLAARMMSQAMRK 178 EQ L + G +I +DS++ L E+E I D+ AR ++ R Sbjct: 122 EQTKIRLLQILQEVKKGDHVIIFIDSISQLPSTKEVEDAIKGNDTQDMTRARALNSFWRV 181 Query: 179 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 + + + +L++IN +IG + P G F +S + VKE +++ Sbjct: 182 ITPEINSKDLVLVWINSYYDEIGNQYAEPNIKGGKQG--FLSSNLIWFITRSQVKEDKDL 239 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 298 +G + ++K + + +LY GI+ + L+++ ++ + + + K Sbjct: 240 LGWNFNIGIMKGRHVKEKAKLPVTVLYDGGIDRWSGLLEIARALGYVDMPSSGWYVRTAK 299 Query: 299 IGQGKANATAW------------LKDNPETAKEIEK 322 G + L +N + A +++K Sbjct: 300 GGFDPEKEKKYQKRQMDDDFWYPLLENVDFADDVKK 335 >UniRef50_P04529 Recombination and repair protein n=12 Tax=T4-like viruses RepID=UVSX_BPT4 Length = 391 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 131/321 (40%), Gaps = 26/321 (8%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA---GGLPM 59 + + K + + A+ ++ + + + T ++IAL GG+ Sbjct: 1 MSDLKSRLIKASTSKLTAELTASKFFNEKD-------VVRTKIPMMNIALSGEITGGMQS 53 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARKLGVDIDNLLC 117 G ++ + GP S K+ L ++++ R+ C F D+E + P Y R +GVD + ++ Sbjct: 54 GLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIH 112 Query: 118 SQPDTGEQ----ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG--LAARM 171 + + EQ + DA+ R V V+ +DS+ L K E E + + + A+ Sbjct: 113 TPVQSLEQLRIDMVNQLDAIERGEKV-VVFIDSLGNLASKKETEDALNEKVVSDMTRAKT 171 Query: 172 MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 231 M R + N I IN + +T GG Y++ + I Sbjct: 172 MKSLFRIVTPYFSTKNIPCIAINHTYETQEMF---SKTVMGGGTGPMYSADTVFIIGKRQ 228 Query: 232 VKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAW 291 +K+G ++ G + + V K++ + + + GI+ Y L+D+ ++ + K Sbjct: 229 IKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVVKPKNG 288 Query: 292 YS---YKGEKIGQGKANATAW 309 + + E+ G+ +W Sbjct: 289 WYAREFLDEETGEMIREEKSW 309 >UniRef50_Q5ULR1 Recombinase A n=1 Tax=Lactobacillus phage LP65 RepID=Q5ULR1_9CAUD Length = 405 Score = 181 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 32/346 (9%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDV-ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 73 + + K G I + + V + I T +LD L +G GR+ E++G SSGK Sbjct: 9 MNSLSK--GDKRITKYSDTDQGRVKDYIPTLIPALDKNLVSGIPSSGRVTEVFGLPSSGK 66 Query: 74 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG---------- 123 +TL V+ A + + D E +D LGVD ++ P+ Sbjct: 67 STLMGLVMKNALKMNVIPIYFDVEETMDSERLEGLGVDPSKVITVTPEINKDNTVTPLYI 126 Query: 124 EQALEICDALA------RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 177 E+ +A S + ++DSV K E + + +G A+ ++ R Sbjct: 127 EEITNYIVNMAAKIHSQSSELTSMFIIDSVGFTQSKLEANTDSESATVGQQAKALAIMAR 186 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMFGNP--ETTTGGNALKFYASVRLDIRRIGAVK-- 233 K+ NL +N +LI +NQ R + + GG + + S RL I++ A+K Sbjct: 187 KVQANLSYNNGMLIGLNQGRDDMKAPNPKYAQTKSLGGKGWEHFTSSRLRIQKTTAIKMH 246 Query: 234 -EGENVVGSETRVKVVKNKIAAPFKQAE-FQILYGEGINFYGELVDLGVKEKLIEKAGAW 291 +N VG +T+V VVK+K+ A ++L G + + GV E +I+ +G W Sbjct: 247 NSDKNAVGFDTKVTVVKSKVGDNVTDAVTIKLLGARGFDRETNIFYGGVDEGIIKGSG-W 305 Query: 292 YSY---KGEKI-GQGKANATAWLKDN--PETAKEIEKKVRELLLSN 331 Y+Y GE+I QG + ++LK + ETA EI +KV + + Sbjct: 306 YTYVNDDGEQIKKQGWVDFVSYLKSDEGKETANEIWRKVALKVFPD 351 >UniRef50_UPI0001BCAEAD recA protein n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEAD Length = 466 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 146/342 (42%), Gaps = 25/342 (7%) Query: 3 IDENKQKALAAALGQIEKQFGK-GSIMRLGE----DRSMDVETISTGSLSLDIALGAGGL 57 + K+K L + K K G ++LG S + TG L +D L G Sbjct: 2 LSNEKRKKLDEFIKNQNKIAEKEGKEIKLGNLNDFKMSGRENYMLTGILGID--LNTNGF 59 Query: 58 PMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIYARKL-GVDIDN 114 G IYG ES GK+TL LQ+ Q K ++D+E LD + ++ + +N Sbjct: 60 KKGTFNVIYGAESGGKSTLALQICEGFQLTDPDKQFLYVDSEGTLDETFINRIPNLKKEN 119 Query: 115 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 174 ++ + E + + + G VDVI++DSV ++T +++ + D+ + +R++S+ Sbjct: 120 MIFLKDGIMESIFDTIKEIVKEGLVDVIIIDSVDSMTTNSQLGKSLEDNIVMDKSRILSR 179 Query: 175 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 234 A+ L + + + I Q R+ + +GG A+ +Y S + +I + E Sbjct: 180 ALSDLTDFISKYGITIFIIQQERINMSGYTVRQHGRSGGKAMLYYPSTVYRLAKINSQNE 239 Query: 235 GENVVGSETRVKV-------VKNKIAAPFKQAEFQILYGE----GINFYGELVDLGVKEK 283 E SE +V K+KI+ PFK+ I + ELVD Sbjct: 240 TEKDQISENKVVTQYVKIINEKSKISEPFKETFTWINLDRRKKIAVKKIQELVDYATIYG 299 Query: 284 LIEKAGAWYSY----KGEKIGQGKANATAWLKDNPETAKEIE 321 LI K G+WY K QG L +NP+ E++ Sbjct: 300 LITKGGSWYEIVDSNGETKKVQGANGVNKLLSENPDFYTELK 341 >UniRef50_A8AB83 DNA repair and recombination protein radA n=16 Tax=Archaea RepID=RADA_IGNH4 Length = 327 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 41/291 (14%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 QK + AA ++ +F ++L M++ I+TGS +LD LG GG+ I E Sbjct: 56 TAQKIIRAARQMLDIRFRTAKEVKLE---RMNLRKITTGSKNLDDLLG-GGIETKTITEF 111 Query: 66 YGPESSGKTTLTLQVIAAAQ---REGK--------TCAFIDAEHALD----PIYARKLGV 110 +G SGK+ L Q Q +G ++D E A+ LG+ Sbjct: 112 FGEFGSGKSQLCHQASVNVQLPLEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGL 171 Query: 111 D----IDNLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTPKAEIEGEIGDS 163 D +DN+ + + + I + L V +IVVDSV + +AE G Sbjct: 172 DPDQVMDNIYYIRAVNSDHQMAIVEELFNLVPKENVKLIVVDSVTSHF-RAEYPGR---E 227 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 223 ++ + + +++ + +L + NT +I NQ+ + V +G+P GG+ L VR Sbjct: 228 NLAVRQQKLNKHLHQLGKLAEVYNTAVIITNQVMARPDVFYGDPTQAVGGHVLYHAPGVR 287 Query: 224 LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 + +++ K R+ V + P +A F I GI + Sbjct: 288 VQLKKARGNK----------RIARVVDAPHLPEAEAVFAIT-DCGIRDPED 327 >UniRef50_B9L413 RecA protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L413_THERP Length = 357 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 119/278 (42%), Gaps = 26/278 (9%) Query: 58 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLC 117 P GR++E+ GP SGK TL + + QR G A++DA H++D GV + +LL Sbjct: 98 PRGRLIELAGPTYSGKRTLAGWFVRSVQRAGGWVAYLDAAHSVDFDRLHHWGVAVLDLLV 157 Query: 118 SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 177 + P + +ALE+ L SGA+D++V+D L ++ + + +R Sbjct: 158 ALPQSVTEALELARLLVLSGALDLVVLDLPPHLALRS----------------ALDRGLR 201 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEN 237 +L L+ T + +R ++ P T L+ + + R G + Sbjct: 202 QLRPLLRGLPTAFVV---VRDRVD----TPALATAQVRLRLEPLTQ--LVRPGPLAAQAL 252 Query: 238 VVGSETRVKVVKNKIAAPF-KQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKG 296 G V++ + + P ++ EG+ E +DLG+ +I + Sbjct: 253 PEGLRVHVRIERGPLWPPRDPPVPIELCLREGVRVALERIDLGLALGVIRLHSLGLVFAE 312 Query: 297 EKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS 334 +G+ + A L+ +P ++E+++R LS S Sbjct: 313 TVLGRTRERAAVRLQSDPSLWSQLEEEIRVRWLSGDRS 350 >UniRef50_Q5GQK3 RecA-like recombination protein n=6 Tax=root RepID=Q5GQK3_BPSYP Length = 343 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 132/321 (41%), Gaps = 31/321 (9%) Query: 40 TISTGSLSLDIALGA---GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFI 94 + TGS + + GG+P +I + G +GKT L V+ + Sbjct: 31 FVDTGSYIFNALVSGSIFGGIPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAGVIYF 90 Query: 95 DAEHALDPIYARKLGVDIDNLLCSQPDTGE----QALEICDALARSGAVD----VIVVDS 146 + E A+ G+D ++ DT E QA+ I D + + V+DS Sbjct: 91 ETESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIIDKYMEQNKSERKPLMFVLDS 150 Query: 147 VAALTPKAEIEGEIGDSHM--GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 + L K E+E D + A+++ A R L + ++N ++ N +G Sbjct: 151 LGMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGKANIPMLVTNHTYDVVGSYV 210 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 E GG+ LK+ AS + + + K+G ++VG+ + + K+++ + E ++ Sbjct: 211 PTKEM-GGGSGLKYSASTIVYLGKK-KEKDGTDLVGNIIKCEAKKSRLTREGSKVETRLF 268 Query: 265 YG-EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP------ETA 317 + G+ Y +++LG E+AG W + G GK + NP E Sbjct: 269 FDQRGLERYYGMLELG------ERAGLWKNTAGRYEINGKKVYGKQILANPDEFFTEEIL 322 Query: 318 KEIEKKV-RELLLSNPNSTPD 337 +E++K+ RE L + D Sbjct: 323 QELDKQAQREFLYGASDDGED 343 >UniRef50_P37384 Meiotic recombination protein DMC1 homolog n=10 Tax=Eukaryota RepID=DMC1_LILLO Length = 349 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 112/273 (41%), Gaps = 35/273 (12%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 K AA + + GS + L V I+TGS +LD LG GG+ +I E +G Sbjct: 83 DKICEAAEKLVNVGYITGSDVLLK---RKSVIRITTGSQALDELLG-GGIETLQITEAFG 138 Query: 68 PESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD----ID 113 SGKT + + + Q A+ID E P A + G+D +D Sbjct: 139 EFRSGKTQIAHTLCVSTQLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAERFGMDASAVLD 198 Query: 114 NLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTP-KAEIEGEIGDSHMGLAA 169 N++ ++ T E + AL +++VDSV AL GE+ + LA Sbjct: 199 NIIYARAYTYEHQYNLLLALAAKMSEEPFRLLIVDSVIALFRVDFSGRGELAERQQKLA- 257 Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV--MFGNPETTTGGNALKFYASVRLDIR 227 Q + +L ++ N + NQ+ G +P+ GG+ L A+VRL +R Sbjct: 258 ----QMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATVRLMLR 313 Query: 228 ------RIGAVKEGENVVGSETRVKVVKNKIAA 254 R+ + + N+ SE ++ +A Sbjct: 314 KGKGEQRVCKIFDAPNLPESEAVFQITPGGVAD 346 >UniRef50_O93748 DNA repair and recombination protein radA n=3 Tax=Thaumarchaeota RepID=RADA_CENSY Length = 398 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 111/283 (39%), Gaps = 35/283 (12%) Query: 13 AALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 72 A G I K F GS + R + I+TG+ +LD LG GG+ I E++G SG Sbjct: 64 AETGAITKDFASGSEIY---KRRQSIGMITTGTDALDALLG-GGIETQAITEVFGEFGSG 119 Query: 73 KTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD----IDNLLCS 118 KT + Q+ G +ID E P A+ +D +D ++ + Sbjct: 120 KTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMDPAKLLDGIIVA 179 Query: 119 QPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 + + I + + + +I+ DS L ++E +G + + + + Sbjct: 180 RAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLF-RSEY---LGRGTLASRQQKLGRY 235 Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 +R LA + N ++ NQ+ FG+P GGN + ++ R+ R+ G K Sbjct: 236 IRLLARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRIYFRKGGKNK-- 293 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDL 278 RV + + P +A F++ + L L Sbjct: 294 --------RVAKIIDSPHHPASEAVFELGERGVQDTEEHLKQL 328 >UniRef50_Q94CQ8 P0660F12.22 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q94CQ8_ORYSJ Length = 239 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 107/235 (45%), Gaps = 42/235 (17%) Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 121 +VE++G E+SGKTTL L V+ AQ++G CA+IDAE+A +P A +GV+++ LL +QPD Sbjct: 1 MVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPD 60 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 + E +L I + L V+V R + Sbjct: 61 SAENSLSIVNTLVGGSIDVVVVDSVC---------------------------FFRNVRT 93 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 L + T IF E GGNAL FYA+VR+ R G Sbjct: 94 KLSSNQTPGIF--------------KEVACGGNALGFYAAVRMRTSRRELRYNEAQATGI 139 Query: 242 ETRVKVVKNKIAA-PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYK 295 V+++KNK+A K+A I +G+GI + E+++L +I K + Y Sbjct: 140 GISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWIN 194 >UniRef50_Q4N2W2 DNA repair protein rad51, putative n=2 Tax=Eukaryota RepID=Q4N2W2_THEPA Length = 343 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 37/260 (14%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----- 87 + ++ +TGS LD L GG+ G I EI G +GK+ L + Q Sbjct: 97 EARGNLIKFTTGSAQLDKLL-QGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSG 155 Query: 88 -GKTCAFIDAEHALDPIY----ARKLGVD----IDNLLCSQPDTGEQALEICDA---LAR 135 C ++D+E P A++ G+ +DN+ ++ + LE+ + Sbjct: 156 GEGKCLWVDSEGTFRPERIVSIAKRFGLSPSDCLDNVAYARAYNTDHQLELLVEASAMMA 215 Query: 136 SGAVDVIVVDSVAALT-PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 +++VDS +L GE+ M L + +R L ++ N Sbjct: 216 QTRFALLIVDSATSLYRSDYSGRGELASRQMHLC-----KFLRALQRIADTFGVAVVITN 270 Query: 195 QIRMKIGVM---FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 Q+ K+ M FGN + GG+ + + RL +R+ E+R+ + + Sbjct: 271 QVVAKVDAMSTFFGNDKLPVGGHIIAHASQTRLFLRQSK----------GESRICKIYDS 320 Query: 252 IAAPFKQAEFQILYGEGINF 271 P +A F I G ++ Sbjct: 321 PVLPEGEAVFAITDGGINDY 340 >UniRef50_A4WN87 DNA repair and recombination protein radA n=17 Tax=Archaea RepID=RADA_PYRAR Length = 333 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 42/291 (14%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGE--DRSMDVETISTGSLSLDIALGAGGLP 58 + +E + + +A + G S + E +R + ISTG SLD LG GG+ Sbjct: 64 IGNEERALQIIESARKML----GLHSFISALEVYERRKKIRRISTGVRSLDELLG-GGIE 118 Query: 59 MGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKL 108 + E+ G SGKT L Q+ Q G +ID E+ P AR Sbjct: 119 TRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARAR 178 Query: 109 GVDID----NLLCSQPDTGEQALEICD---ALARSGAVDVIVVDSVAALTPKAEIEGEIG 161 G+D D N+ ++ + + + + + ++ + V +IVVDSV A ++E G Sbjct: 179 GLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHF-RSEFPGR-- 235 Query: 162 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 221 ++ + +++ + L + ++ NQ+ + V FGNP GGN L A+ Sbjct: 236 -ENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRPAGGNILAHGAT 294 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVK--NKIAAPFKQAEFQILYGEGIN 270 RL +R+ S+ +++VK + P + F+I I+ Sbjct: 295 YRLWLRK------------SKENIRIVKIFDSPYHPEGEVSFRITEEGLID 333 >UniRef50_Q39009 Meiotic recombination protein DMC1 homolog n=49 Tax=Eukaryota RepID=DMC1_ARATH Length = 344 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 107/273 (39%), Gaps = 35/273 (12%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 K AA + + GS + V I+TG +LD LG GG+ I E +G Sbjct: 78 DKICEAAEKIVNFGYMTGSD---ALIKRKSVVKITTGCQALDDLLG-GGIETSAITEAFG 133 Query: 68 PESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD----ID 113 SGKT L + Q A+ID E P A + G+D +D Sbjct: 134 EFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLD 193 Query: 114 NLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTP-KAEIEGEIGDSHMGLAA 169 N++ ++ T E + L +++VDS+ AL GE+ D LA Sbjct: 194 NIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLA- 252 Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV--MFGNPETTTGGNALKFYASVRLDIR 227 Q + +L ++ N + NQ+ G +P+ GG+ L A++RL R Sbjct: 253 ----QMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLLFR 308 Query: 228 ------RIGAVKEGENVVGSETRVKVVKNKIAA 254 R+ V + N+ +E ++ + IA Sbjct: 309 KGKGDTRVCKVYDAPNLAEAEASFQITQGGIAD 341 >UniRef50_D1ZY30 Whole genome shotgun sequence assembly, contig_3649 n=1 Tax=Sordaria macrospora RepID=D1ZY30_SORMA Length = 209 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 78/139 (56%), Positives = 106/139 (76%), Gaps = 10/139 (7%) Query: 189 LLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVV 248 ++IFINQ+RMKIGVM+GNPETTTGGNALKFYAS +K+ + ++G+ TRVKVV Sbjct: 1 MVIFINQLRMKIGVMYGNPETTTGGNALKFYAS----------IKDRDEIIGNATRVKVV 50 Query: 249 KNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATA 308 KNK+A PFKQ EF I+YG+GI+ GE++DLGVK L+EK+GAW+SY +IGQG+ NA Sbjct: 51 KNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENAKT 110 Query: 309 WLKDNPETAKEIEKKVREL 327 +L ++PE ++E +R+ Sbjct: 111 FLTEHPELRDKLEASIRQR 129 >UniRef50_A7ATP8 Rad51 protein, putative n=1 Tax=Babesia bovis RepID=A7ATP8_BABBO Length = 346 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 64/283 (22%), Positives = 110/283 (38%), Gaps = 40/283 (14%) Query: 13 AALGQIEKQFGKGSIMRLGEDR--SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 A + +I K+ I E +++ +TGS +LD L GG+ G I EI G S Sbjct: 75 AKIKEIVKELCPPDICTAAEYLECRLNLIKFTTGSTALDALL-QGGIESGSITEIIGDFS 133 Query: 71 SGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD----IDNLL 116 +GKT L + +Q C +ID +++ P A + G+ + N++ Sbjct: 134 TGKTQLCHTLAITSQLPIEQNGGEGKCLWIDTQNSFRPERLGPIANRFGLSHAECVANIV 193 Query: 117 CSQPDTGEQALEICDALARSGA---VDVIVVDSVAALT-PKAEIEGEIGDSHMGLAARMM 172 + EQ ++ A A +++VDS AL GE+ M + Sbjct: 194 YVKVSNTEQQFDMLVEAAHYMAQSRFAMLIVDSATALYRTDYTGRGELAARQMS-----L 248 Query: 173 SQAMRKLAGNLKQSNTLLIFINQIRMKIGV----MFGNPETTTGGNALKFYASVRLDIRR 228 + R L ++ NQ+ ++ M GN + GG+ + RL +R+ Sbjct: 249 GKYFRALKRLADIYGVAVVVTNQVMARVDNMSSFMGGNDKVPVGGHVVAQNTQTRLFLRK 308 Query: 229 IGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINF 271 +RV V N + P +A F I G +++ Sbjct: 309 AR----------GNSRVCKVYNSPSLPEGEAVFAIAEGGIVDY 341 >UniRef50_Q14565 Meiotic recombination protein DMC1/LIM15 homolog n=44 Tax=Eumetazoa RepID=DMC1_HUMAN Length = 340 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 116/286 (40%), Gaps = 42/286 (14%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 K AA IE F + E R M V I+TGS D LG GG+ I E +G Sbjct: 71 DKIKEAANKLIEPGFL--TAFEYSEKRKM-VFHITTGSQEFDKLLG-GGIESMAITEAFG 126 Query: 68 PESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIYAR----KLGVD----ID 113 +GKT L+ + AQ G FID E+ P R + VD +D Sbjct: 127 EFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 186 Query: 114 NLLCSQPDTGEQALEICDALA-----RSGAVDVIVVDSVAALTP-KAEIEGEIGDSHMGL 167 N+L ++ T E +E+ D +A +G ++++DS+ AL GE+ + L Sbjct: 187 NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKL 246 Query: 168 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF---GNPETTTGGNALKFYASVRL 224 A Q + +L ++ N + NQ+ G +P+ GG+ L ++ R+ Sbjct: 247 A-----QMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRI 301 Query: 225 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 +R+ E R+ + + P +A F I G + Sbjct: 302 SLRKGR----------GELRIAKIYDSPEMPENEATFAITAGGIGD 337 >UniRef50_A4YCN4 DNA repair and recombination protein radA n=12 Tax=Sulfolobaceae RepID=RADA_METS5 Length = 324 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 117/287 (40%), Gaps = 37/287 (12%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 Q+ + A ++ +F + E V+ I+TGS +LD LG GG+ + E+ Sbjct: 57 TAQRIIKEARDALDIRFKTALEI---EQERASVKKITTGSQALDGLLG-GGIETRTMTEL 112 Query: 66 YGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD---- 111 +G SGKT + QV Q +ID E A LG++ Sbjct: 113 FGEFGSGKTQICHQVSVNVQLPPERGGLSGKALYIDTEGTFRTERIKAMASALGLEPKEV 172 Query: 112 IDNLLCSQPDTGEQALEICDAL----ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 167 + N++ + + + I + L A+ ++ ++VVDS+ + +AE G ++ + Sbjct: 173 LQNIMSIRAINTDHQIAIVEELQDIIAKDNSIKLVVVDSITSHF-RAEYSGR---ENLAV 228 Query: 168 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 227 + +++ + +L + + +I NQ+ + + +G+P GG+ L +R+ I+ Sbjct: 229 RQQKLNRHLHQLVRLAEIYDLAVIVTNQVMARPDMFYGDPTVAVGGHTLYHVPGIRVQIK 288 Query: 228 RIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 + R+ + + P + F I GI E Sbjct: 289 KSR----------GNRRIARMVDAPHLPEGEVVFSIT-NTGIRDAEE 324 >UniRef50_D2EF50 DNA repair and recombination protein RadA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EF50_9EURY Length = 345 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 68/290 (23%), Positives = 116/290 (40%), Gaps = 38/290 (13%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 + +K +A A + F G ED+ V+ IST S +L+I LG GG+ I Sbjct: 72 EPTARKIVAEAREASKMNFMSGLEF---EDKRKSVQRISTSSEALNILLG-GGVETQSIT 127 Query: 64 EIYGPESSGKTTLTLQVIAAAQ---REGKT---CAFIDAEHALDPIYARKL----GVD-- 111 E YG SGK+ L Q+ Q +G +ID E P +L G+D Sbjct: 128 ECYGEYGSGKSQLAFQLAVDVQLPLEKGGLEGHAIWIDTEGTFRPSRIEQLAAVKGLDPK 187 Query: 112 --IDNLLCSQPDTGEQALEICDALAR----SGAVDVIVVDSVAALTP-KAEIEGEIGDSH 164 + N+ + + + + + D + + +IVVDS+ AL + G + D Sbjct: 188 QALQNIKIGRAYSSDHQVLLVDKVPELINADPKIKLIVVDSMMALFRAEYVGRGTLVDRQ 247 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 224 + + L + N + NQ+ + VMFG+P GG+ + A+ R+ Sbjct: 248 QKVNV-----VLHNLQRLADRFNVAVYITNQVMARPDVMFGDPTAAVGGHIIGHVATYRI 302 Query: 225 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 +R+ +RV + + + P +A F+I + E Sbjct: 303 YLRKGKK----------GSRVGKLVDSPSLPEGEASFEITSNGITDLEEE 342 >UniRef50_Q95Q25 Protein Y43C5A.6a, confirmed by transcript evidence n=5 Tax=Caenorhabditis RepID=Q95Q25_CAEEL Length = 395 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 61/293 (20%), Positives = 114/293 (38%), Gaps = 42/293 (14%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 D+ +K + A+ ++ F G+ + + + + + TGS SLD LG GG+ G I Sbjct: 122 DQKAEKIMKEAMKFVQMGFTTGAEVHVKRSQLVQIR---TGSASLDRLLG-GGIETGSIT 177 Query: 64 EIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD-- 111 E+YG +GKT L + Q C +ID P A++ +D Sbjct: 178 EVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRYNMDSA 237 Query: 112 --IDNLLCSQPDTGEQALEIC---DALARSGAVDVIVVDSVAA-LTPKAEIEGEIGDSHM 165 ++N+ ++ E + + A+ V++VD A + G++ + M Sbjct: 238 HVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHFRNEYTGRGDLAERQM 297 Query: 166 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV----MFGNPETTTGGNALKFYAS 221 L+A ++ LA + +I NQ+ ++ + + GG+ + ++ Sbjct: 298 KLSA-----FLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHIIAHMST 352 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 RL +R+ E RV + P +A + I GI E Sbjct: 353 TRLYLRKGK----------GENRVAKMVQSPNLPEAEATYSIT-NHGIEDARE 394 >UniRef50_A8L2Z2 RecA domain protein n=1 Tax=Frankia sp. EAN1pec RepID=A8L2Z2_FRASN Length = 274 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 94/137 (68%), Gaps = 4/137 (2%) Query: 213 GNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 272 + +F VR D+RRI +K+G+ V + TRVKVV+NK+A PF+ AEF I+YG GI+ Sbjct: 25 QPSCRFSQPVRHDVRRIETLKDGQEAVANRTRVKVVRNKMAPPFRMAEFDIVYGGGISRE 84 Query: 273 GELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNP 332 G L+D+GV+ +I K+GAWY+ G+++GQGK NA ++L+DNP+ A E EK+++E L +P Sbjct: 85 GSLIDMGVEHTIIRKSGAWYTDDGDQLGQGKENARSFLRDNPDLANETEKRIKEKLGLSP 144 Query: 333 ----NSTPDFSVDDSEG 345 ++ P +VD G Sbjct: 145 TLDADAPPPVAVDFWPG 161 >UniRef50_Q06609 DNA repair protein RAD51 homolog 1 n=385 Tax=Eukaryota RepID=RAD51_HUMAN Length = 339 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 61/283 (21%), Positives = 104/283 (36%), Gaps = 40/283 (14%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 K LA A + F + R ++ I+TGS LD L GG+ G I E+ Sbjct: 70 KADKILAEAAKLVPMGFTTATEFH---QRRSEIIQITTGSKELDKLL-QGGIETGSITEM 125 Query: 66 YGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD---- 111 +G +GKT + + Q +ID E P A + G+ Sbjct: 126 FGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDV 185 Query: 112 IDNLLCSQPDTGEQA---LEICDALARSGAVDVIVVDSVAALT-PKAEIEGEIGDSHMGL 167 +DN+ ++ + L A+ +++VDS AL GE+ M L Sbjct: 186 LDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHL 245 Query: 168 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFGNPETTTGGNALKFYASVRL 224 A + +R L + ++ NQ+ ++ +P+ GGN + ++ RL Sbjct: 246 A-----RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL 300 Query: 225 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 267 +R+ ETR+ + + P +A F I Sbjct: 301 YLRKGR----------GETRICKIYDSPCLPEAEAMFAINADG 333 >UniRef50_Q8IB05 Meiotic recombination protein dmc1-like protein n=11 Tax=Apicomplexa RepID=Q8IB05_PLAF7 Length = 347 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 72/293 (24%), Positives = 114/293 (38%), Gaps = 44/293 (15%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGE--DRSMDVETISTGSLSLDIALGAGGLP 58 I E K K L A +IE S + E + V I+TGS D LG GG+ Sbjct: 72 GISEAKVDKILEVA-SKIE---NCSSFITANELVQKRSKVLKITTGSTVFDQTLG-GGIE 126 Query: 59 MGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPI----YARKL 108 I E++G GKT + + AQ +ID E P A + Sbjct: 127 SMCITELFGENRCGKTQVCHTLAVTAQLPKSLNGGNGKVCYIDTEGTFRPEKVCKIAERY 186 Query: 109 GVD----IDNLLCSQPDTGE---QALEICDALARSGAVDVIVVDSVAALTP-KAEIEGEI 160 G+D +DN+L ++ T E Q L I A ++VVDS+ +L GE+ Sbjct: 187 GLDGEAVLDNILYARAFTHEHLYQLLAISAAKMCEEPFALLVVDSIISLFRVDFSGRGEL 246 Query: 161 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFGNPETTTGGNALK 217 + +++ M L+ +Q N ++ NQ+ G NP GG+ + Sbjct: 247 SERQQK-----LNKTMSILSKLSEQFNIAILITNQVMSDPGATMTFIANPMKPVGGHVIG 301 Query: 218 FYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 +++RL +R+ + RV V + P + FQ+ I+ Sbjct: 302 HASTIRLSLRKGK----------GDQRVCKVYDAPNLPEVECIFQLSDKGVID 344 >UniRef50_Q013L3 DNA repair protein RAD51/RHP55 (ISS) n=2 Tax=Chlorophyta RepID=Q013L3_OSTTA Length = 420 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 40/280 (14%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 A + F +++ E DV I+TG +D L GG+ G + EIYG + Sbjct: 157 RGANNLVPGGFTTATMI---EAARKDVIMITTGCAKVDEML-QGGIESGSVTEIYGEFRT 212 Query: 72 GKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD----IDNLLC 117 GKT L + Q C +ID E P A + +D +DN+ Sbjct: 213 GKTQLMHTLAVTCQLPIEQGGGEGKCLYIDTEGTFRPQRLIQIAERFQMDPGPVLDNVAY 272 Query: 118 SQPDTGEQALEICDALARSGA---VDVIVVDSVAALT-PKAEIEGEIGDSHMGLAARMMS 173 ++ E E+ A A A ++++DSV L + E GE+ M + Sbjct: 273 AKAHNTEHQTELLVAAAGMMAETRFALMIIDSVTNLYRTEYEGRGELSARQMH-----LG 327 Query: 174 QAMRKLAGNLKQSNTLLIFINQIRMKIGVM---FGNPETTTGGNALKFYASVRLDIRRIG 230 + +R+LA + +I NQ+ N GGN + ++ RL +R+ Sbjct: 328 KFLRQLARLADEFGVAVIVSNQVVANPEGGPFAGANALKPIGGNIMAHASTTRLALRKGR 387 Query: 231 AVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 G +K+V + + P +A+F I + Sbjct: 388 ---------GENRVMKIVCSPM-LPESEAQFSIGEDGIND 417 >UniRef50_Q4UA75 DNA repair (Rad51 homologue) protein, putative n=1 Tax=Theileria annulata RepID=Q4UA75_THEAN Length = 369 Score = 150 bits (378), Expect = 7e-35, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 100/286 (34%), Gaps = 63/286 (22%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----- 87 + ++ +TGS LD L GG+ G I EI G +GK+ L + Q Sbjct: 97 EARGNLIKFTTGSSQLDKLL-QGGVETGSITEIIGEFKTGKSQLCHTLAVTCQLPVEQSG 155 Query: 88 -GKTCAFIDAEHALDPIY----ARKLGVD----IDNLLCSQPDTGEQALEICDA---LAR 135 C ++D+E P A++ G+ +DN+ ++ + LE+ + Sbjct: 156 GEGKCLWVDSEGTFRPERIVSIAKRFGLSPSDCLDNVAYARAYNTDHQLELLVEASAMMA 215 Query: 136 SGAVDVIVVDSVAALT-PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 +++VDS +L GE+ M L + +R L ++ N Sbjct: 216 QTRFALLIVDSATSLYRSDYSGRGELASRQMHLC-----KFLRALQRIADTFGVAVVITN 270 Query: 195 QIRMKIGVM-----------------------------FGNPETTTGGNALKFYASVRLD 225 Q+ ++ M GN + GG+ + + RL Sbjct: 271 QVVARVDAMSTFFGILLLYIIIYCYILINICKFYIDKFVGNDKLPVGGHIIAHASQTRLF 330 Query: 226 IRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINF 271 +R+ E+R+ V + P +A F I G ++ Sbjct: 331 LRQSK----------GESRICKVYDSPVLPEGEAVFAITDGGINDY 366 >UniRef50_C1FJ81 DMC1 DNA recombinase n=5 Tax=Chlorophyta RepID=C1FJ81_9CHLO Length = 359 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 78/292 (26%), Positives = 122/292 (41%), Gaps = 44/292 (15%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETIS--TGSLSLDIALGAGGLPMGR 61 D K L AA + K GS + E SM +TI+ TG+ ++D LG GG+P Sbjct: 84 DAKVDKMLEAANKLLPKDQA-GSFVTAKEWMSMRKDTINIRTGADTIDAILG-GGVPTRS 141 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQ---REGKTC---AFIDAEHALDPIY----ARKLGVD 111 I E+YG GKT + + Q EG C AFID E A + +D Sbjct: 142 ITEMYGEWRCGKTQICHTLAVTTQLPLDEGGGCAKVAFIDTEGTFRAERIVQIAERFNLD 201 Query: 112 ----IDNLLCSQPDTGE---QALEICDALARSGAVDVIVVDSVAALTPKAEI-EGEIGDS 163 +DN+L ++ T E AL + ++++DS+ A I GE+ + Sbjct: 202 SDAVLDNILVARTFTHEMMDNALTLLAGKFSEEPFKILIIDSIMAHFRVDFIGRGELSER 261 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM---FGNPETTTGGNALKFYA 220 + + Q + KL + N +++ NQ++ M +P+ GG+ L + Sbjct: 262 Q-----QRLGQFLAKLNKIADEFNIAVVYTNQVQADPSGMSFAGMDPKKAIGGHVLAHAS 316 Query: 221 SVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQA--EFQILYGEGIN 270 VRL +R+ G +KVV A K+A EF I G ++ Sbjct: 317 HVRLSVRKGR---------GDARVIKVVD---APNLKEAEGEFIITDGGVVS 356 >UniRef50_P25453 Meiotic recombination protein DMC1 n=38 Tax=Saccharomyceta RepID=DMC1_YEAST Length = 334 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 62/278 (22%), Positives = 111/278 (39%), Gaps = 41/278 (14%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 +K AA I+ F ++ D V ++STGS LD LG GG+ I E++G Sbjct: 66 EKIKEAAGKIIQVGFIPATV---QLDIRQRVYSLSTGSKQLDSILG-GGIMTMSITEVFG 121 Query: 68 PESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL--GVDID------ 113 GKT ++ + Q A+ID E P +++ G ++D Sbjct: 122 EFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGYELDPESCLA 181 Query: 114 NLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAA-LTPKAEIEGEIGDSHMGLAA 169 N+ ++ E +E+ + L SG +IVVDS+ A GE+ + Sbjct: 182 NVSYARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMANFRVDYCGRGELSERQQK--- 238 Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF----GNPETTTGGNALKFYASVRLD 225 ++Q + KL ++ N + NQ++ G + GG+ L ++ R+ Sbjct: 239 --LNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIGGHVLAHASATRIL 296 Query: 226 IRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 +R+ + RV +++ P K+ + I Sbjct: 297 LRKGR----------GDERVAKLQDSPDMPEKECVYVI 324 >UniRef50_A2SR54 DNA repair and recombination protein radA n=31 Tax=Archaea RepID=RADA_METLZ Length = 329 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 112/287 (39%), Gaps = 49/287 (17%) Query: 8 QKALAAALGQIE-KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 +K + AA + F G+ + R DV + T +D G GGL I E+Y Sbjct: 51 KKIIKAAREMADIGGFKTGTDILA---RRQDVLKLKTLVPEIDELFG-GGLETQAITELY 106 Query: 67 GPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL--GVDID----- 113 G SGK+ + Q+ Q G +C +ID E+ P ++ G+++ Sbjct: 107 GEFGSGKSQIAHQLAVNCQLPQELGGLGGSCLYIDTENTFRPERIEQMAEGLELADLPEG 166 Query: 114 -----------NLLCSQPDTGEQALEICD-------ALARSG-AVDVIVVDSVAALT-PK 153 N+ ++ + + + + D L SG V ++++DS+ +L + Sbjct: 167 YVVPTPDEFLANIHVARAHSSDHQMLLIDAARELSNELTASGLPVKLVIIDSLTSLFRSE 226 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 213 G + +++ M L + N + + NQ+ G++FG+P GG Sbjct: 227 YAGRGTLAGRQQK-----LNRHMHDLFKLVDDLNAVALVTNQVMANPGLLFGDPTKPIGG 281 Query: 214 NALKFYASVRLDIRRIGAVK------EGENVVGSETRVKVVKNKIAA 254 N + A+ R+ +R+ A K + N+ E V I Sbjct: 282 NIVGHTATYRVYLRKSKAGKRIARLVDSPNLPEGEATFMVETAGIKP 328 >UniRef50_UPI0000D55904 PREDICTED: similar to Dmc1 homolog n=1 Tax=Tribolium castaneum RepID=UPI0000D55904 Length = 356 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 36/259 (13%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---- 87 + V ISTGS +LD LG GG+ I +++G SGKT + + Q Sbjct: 104 SEACKQVFKISTGSANLDKLLG-GGVESMSITQVFGEAGSGKTQIAHTLCVTTQIPTEDY 162 Query: 88 -GKTCAFIDAEHALDPIY----ARKLGVDID----NLLCSQPDTGEQALEICDALA---- 134 G FID E + P AR+ + D N+L + E +I +A Sbjct: 163 SGGKVMFIDTERSFRPNRIRQIARRFHLSEDSVLQNILYIRAYNSEHQYQILKNVAVKFH 222 Query: 135 -RSGAVDVIVVDSVAALTPKAEI-EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 192 +G +++VDS+ AL + G + + LA + M L ++ N + Sbjct: 223 EDTGVFKLLIVDSIIALFRNDFMGRGVLLNRQQKLA-----ETMSLLKKISEEYNVAVFI 277 Query: 193 INQIRMKIGVMF-----GNPETTTGGNALKFYASVRLDIR------RIGAVKEGENVVGS 241 NQ+ + F G+ GGN L ++ R+ +R RI + + + Sbjct: 278 TNQVTTSMNNKFPLLTIGDDVKPVGGNILAHSSTTRVALRKLTGNVRIAKIHDSPELAEQ 337 Query: 242 ETRVKVVKNKIAAPFKQAE 260 E + + P AE Sbjct: 338 EEAFTITNGGVQDPILDAE 356 >UniRef50_Q8TVF0 RadA recombinase n=1 Tax=Methanopyrus kandleri RepID=Q8TVF0_METKA Length = 317 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 41/291 (14%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 + E + + L I+ +F ++ +L R I+TGS +LD LG GG+P G Sbjct: 44 GMSERDVEDIQEELRNIDVEF--ETLEKLERKRR----RITTGSSALDEILG-GGVPCGE 96 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQ---REGK---TCAFIDAEHALDPIY----ARKLGVD 111 + E GP SGK+ + Q+ Q EG FID E + P A LG+D Sbjct: 97 LTEFAGPFGSGKSQIVFQLCVNVQLPEEEGGLESKAIFIDTEGTVSPGRIKGMAEALGLD 156 Query: 112 ----IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 164 + N+ +Q + E+ + + L + ++V+DS+ A +AE +GD Sbjct: 157 PGEALRNVFVTQVRSVEEQMRAAEEAHKLCEREDIGLVVIDSLTAHF-RAEYSK-LGDVS 214 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF---GNPETTTGGNALKFYAS 221 AR+M + + +L + ++F NQ+ + I G GG + A+ Sbjct: 215 E-RQARLM-KHVDQLRNLAMDHDVAVVFTNQVHVDIEAATKGKGRRYEPVGGTIVAHQAT 272 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 272 R+ +RR E R+ + + P ++A F+I + Sbjct: 273 HRIMLRRAK----------GEVRIARIIDSPYLPQREAAFRITEEGIRDVE 313 >UniRef50_Q0CWT1 Meiotic recombination protein DMC1 n=22 Tax=Dikarya RepID=Q0CWT1_ASPTN Length = 607 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 43/253 (16%) Query: 33 DRSMDVETISTGSLSLDIALGAG----------------GLPMGRIVEIYGPESSGKTTL 76 + V ISTGS D LG G I E++G GKT L Sbjct: 5 HQRKKVVRISTGSKQFDAILGGQVTSLSRLLHALLTAFRGFQSMSISEVFGEFRCGKTQL 64 Query: 77 TLQVIAAAQREG------KTCAFIDAEHALDPIY----ARKLGVDID----NLLCSQPDT 122 + + AQ A+ID E P A + GVD D N+ ++ Sbjct: 65 SHTMSVVAQLPKEMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALN 124 Query: 123 GEQALEICDALAR---SGAVDVIVVDSVA-ALTPKAEIEGEIGDSHMGLAARMMSQAMRK 178 E LE+ + L+R SG ++++DS+ GE+ D ++Q + K Sbjct: 125 SEHQLELLNTLSREFASGDYRLLIIDSIMNCFRVDYCGRGELADRQQK-----LNQFLMK 179 Query: 179 LAGNLKQSNTLLIFINQIRMKIGVM----FGNPETTTGGNALKFYASVRLDIRRIGAVKE 234 LA ++ N ++ NQ++ G + GG+ L ++ R+ +R+ + Sbjct: 180 LAHMAEEFNVCVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDER 239 Query: 235 GENVVGSETRVKV 247 + S V V Sbjct: 240 VAKIQDSPDIVCV 252 >UniRef50_C1MTK4 Rad51 DNA recombinase 1 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MTK4_9CHLO Length = 411 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 109/281 (38%), Gaps = 43/281 (15%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 + K KA AA+ + F S++ + ISTGS LD LG GG G + Sbjct: 77 MKVEKLKA--AAMKVVPLGFTTASMV---QAVRESTIMISTGSSKLDELLG-GGFESGSL 130 Query: 63 VEIYGPESSGKTTLTLQVIAAAQ---REG---KTCAFIDAEHALDPIY----ARKLGVD- 111 EIYG +GKT L + Q +G +ID E P A + G+D Sbjct: 131 TEIYGEFRTGKTQLCHTLAVTCQLPLAQGGAEGKAMYIDTEGTFRPQRLIAIAERFGMDS 190 Query: 112 ---IDNLLCSQPDTGEQALEICDALARSGA---VDVIVVDSVAALT-PKAEIEGEIGDSH 164 +DN+ ++ E E+ A A A VI+VDSV L + E GE+ Sbjct: 191 AAVLDNVAYAKAHNCEHQSELLVAAAGMMAEARFGVIIVDSVTNLYRTEYEGRGELSARQ 250 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM----FGNPETTTGGNALKFYA 220 M + + +R+LA + ++ NQ+ N GGN + + Sbjct: 251 MH-----LGKFLRQLARLADEFGVAVVVTNQVVANPDGNAMFAGANAMKPIGGNIMAHAS 305 Query: 221 SVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEF 261 + RL +R+ E R+ + P +A+F Sbjct: 306 TTRLALRKGR----------GENRIAKIACSPVLPESEAQF 336 >UniRef50_A5LPZ1 Recombinase A n=1 Tax=Streptococcus pneumoniae SP6-BS73 RepID=A5LPZ1_STRPN Length = 174 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 4/129 (3%) Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVK----EGENVVGSETRVKVVKNKIAAPFKQ 258 MFGNPETT GG ALKFYASVRLD+R +K + E VG ET++KVVKNK+A PFK+ Sbjct: 1 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKE 60 Query: 259 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAK 318 A +I+YGEGI+ GEL+ + +I+KAGAWYSYK EKIGQG NA +L ++PE Sbjct: 61 AVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFD 120 Query: 319 EIEKKVREL 327 EI+K+VR Sbjct: 121 EIDKQVRSK 129 >UniRef50_B0R636 DNA repair and recombination protein radB n=4 Tax=Halobacteriaceae RepID=RADB_HALS3 Length = 236 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 98/251 (39%), Gaps = 36/251 (14%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 93 D + TG +LD LG GG+ G + ++YGP ++GKT + L G + Sbjct: 1 MREDDTHLPTGCGALDELLG-GGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVY 59 Query: 94 IDAEH-------------ALDPIYARKLGVDIDNLLCSQP-DTGEQALEICDALARSGAV 139 +D E A DP A N++ S D EQA + D + Sbjct: 60 VDTEGLSLARFQQLLEARATDPEAASA------NVIVSDAHDFDEQAQAVRDTADFADRA 113 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 D+IVVDSV A GD G A R ++ + L ++ + ++ NQ+ Sbjct: 114 DLIVVDSVTGFYRLA----RGGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVFTD 169 Query: 200 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQA 259 + + GG+ L + L + R G R + K++ + A Sbjct: 170 VDND-SDRARPLGGHTLAHWTGTVLRLDRFR---------GGTRRATLEKHRAKPDGEHA 219 Query: 260 EFQILYGEGIN 270 +FQI G GI+ Sbjct: 220 QFQITDG-GID 229 >UniRef50_UPI00006CB33C hypothetical protein TTHERM_00459230 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB33C Length = 356 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 84/219 (38%), Gaps = 28/219 (12%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---- 88 R + ISTGS +LD L GG+ I E YG SGKT + AQ + Sbjct: 103 QRRSQIRRISTGSKALDDILN-GGIESQSITEFYGEYRSGKTQIAHTACVLAQSQDHCQS 161 Query: 89 -KTCAFIDAEHALDPIY----ARKLGVD----IDNLLCSQPDTGEQA----LEICDALAR 135 +ID E P A G++ + N++ + +Q ++ + Sbjct: 162 PGKVLYIDTEGTFRPERICQIASHYGMEGEYALSNIIYGRAYNVDQQNTLLIKGAQLMVE 221 Query: 136 SGAVDVIVVDSVAA-LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 ++VVDS+ A G++ + + + + M +L + N +I N Sbjct: 222 ENCFALLVVDSIMANFRCDFSGRGDLSERQ-----QALGKFMSRLQRMAAEFNIAVIITN 276 Query: 195 QIRMKI-GVMFG---NPETTTGGNALKFYASVRLDIRRI 229 Q+ G M G GG+ L ++ RL +++ Sbjct: 277 QVMADPSGAMTGGAIPQPKPIGGHILAHASTQRLFMKKK 315 >UniRef50_UPI0001AF06D9 RecA-like recombinase n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF06D9 Length = 734 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 23/241 (9%) Query: 25 GSIMRLGEDRSMDVETISTGSLSLDIALGA---GGLPMGRIVEIYGPESSGKTTLTLQVI 81 ++ E+ + TG L+ A+ GG+P GRIVE+YGP SSGKT ++ Sbjct: 15 EKLIGDNEETQTVTNWLDTGDPELNFAISGRYDGGIPYGRIVEMYGPPSSGKTAEATDLM 74 Query: 82 AAAQREGKTCAFIDAEHALDPIYARKLGVDIDN--LLCSQPDTGEQ----ALEICDALAR 135 AQ G F D E + D A+ LG+ + + +P+T E+ A+ + + Sbjct: 75 IRAQEAGGIAMFFDWERSFDINLAKNLGLKTERPFWIYKKPETWEEGNVLAMRAVELIRN 134 Query: 136 S-----GAVDVIVVDSVAALTPKAEIEGE---------IGDSHMGLAARMMSQAMRKLAG 181 S A + V DSVA+ P++ S AR S +++ +A Sbjct: 135 SATIPDDAPIICVFDSVASAIPQSVYYDNKGKKREIDTFNMSDNTALARASSTSLKVIAQ 194 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 ++ N +++NQ R KIGVMFG+P + F +++I K + V Sbjct: 195 TAEKYNATFLYLNQQRTKIGVMFGDPTCLRAEVQVPFVDGTSATMKQIVDGKISKEVWSW 254 Query: 242 E 242 Sbjct: 255 N 255 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 210 TTGGNALKFYASVRLDIRR---IGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 T GG++ ++YASVR+ + R + V + VG + K+VK K+ PF++ ++ + Sbjct: 583 TPGGSSFEYYASVRIALGRTKLMETVNGKKQFVGQDIATKIVKTKLTKPFQETTMRMWFD 642 Query: 267 EG----INFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 322 + + + LV+ + +++++GA+ + K K + LK +P +++ Sbjct: 643 KNGVAFFDRHYNLVEFLKAKGILKQSGAYIEWTDGKKYHLK-SLCDKLKADPTGLQQLRA 701 Query: 323 KV 324 + Sbjct: 702 LI 703 >UniRef50_O28184 DNA repair and recombination protein radB n=3 Tax=Archaeoglobaceae RepID=RADB_ARCFU Length = 221 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 27/236 (11%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I TGS +D LG GG+ G + +IYG +GKTTL L + A + K A+ID E L Sbjct: 6 IPTGSKCIDSLLG-GGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQFK-VAYIDTEG-L 62 Query: 101 DPIYARKLGVD---IDNLLCSQPDTGEQ---ALEICDALARSGAVDVIVVDSVAALTPKA 154 R++ D N+ + Q A++ + L RS V +++VD +L ++ Sbjct: 63 SGERVRQIFGDERLFSNVFVYEVYRFRQQGVAIQEAEKLCRSEKVKLVIVDCFTSLY-RS 121 Query: 155 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 214 E+E D R ++ + L G ++ + ++ NQ+ +G P GG Sbjct: 122 ELE---DDRKQIKIKRELTSQLTFLLGMARKYDVAVVITNQMFTDVGSGVDRP---LGGP 175 Query: 215 ALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 +L+ + V + + R ++ + ++K++ K ++I GI Sbjct: 176 SLEHLSKVIIALERSNELR----------KATLIKHRWMKEGKSCFYRIT-DRGIE 220 >UniRef50_Q555F1 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q555F1_DICDI Length = 458 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 96/184 (52%), Gaps = 21/184 (11%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT------ 90 + TI++G SLD L GGLP+ I+EIYG S+GK+TL++ +++ + K+ Sbjct: 81 KIPTITSGITSLDYQLQIGGLPLNHIIEIYGDSSTGKSTLSMFILSNLIKNNKSKQEQRL 140 Query: 91 --------------CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 136 +ID+E++ + +A K+G+++ N QP+ E+A E+ ++ Sbjct: 141 SSSSSSLSSSQEENVLYIDSENSFNSEWASKIGMNLSNCTVFQPNNSEEAFELIKKSLKN 200 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSH-MGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 VI++DS+++L +IE + ++H + ++ + +++ L SN IF NQ Sbjct: 201 QIFKVIILDSLSSLMSIKDIESNLVENHYQNIGFDWITSNLNEISNLLIDSNCCFIFTNQ 260 Query: 196 IRMK 199 +R Sbjct: 261 MRYS 264 >UniRef50_A8N2F5 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N2F5_COPC7 Length = 249 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 58/284 (20%) Query: 3 IDENKQKALAAALGQIE-KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 + E K + + A +I F G + +D+ V ISTGS +D LG GG+ Sbjct: 1 MSEAKVEKIKEAAQKIHGSSFATGVEI---QDKRKRVLVISTGSKLVDGILG-GGVMSQS 56 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYAR----KLGVD 111 I E+YG +GKT L + AQ A+ID E P R + GVD Sbjct: 57 ITEVYGEYRTGKTQLAHTMSVVAQLPPEYGGAAGKVAYIDTEGTFRPDRIRAIADRFGVD 116 Query: 112 ----IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 167 ++N+L ++ E +E+ + A + Sbjct: 117 GTMALENILYARAFNSEHQMELINE-------------CSARFAEDKDFRL--------- 154 Query: 168 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF----GNPETTTGGNALKFYASVR 223 +++Q + KL ++ N ++ NQ++ G G GG+ L ++ R Sbjct: 155 ---LLAQMLSKLTKLSEEFNIAVLMTNQVQSDPGATMTFVAGGALKPIGGHILSHASATR 211 Query: 224 LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 267 + +R+ A E RV + + P +A +++ G Sbjct: 212 IFLRKGRA----------EERVAKLVDSPDRPESEASYKLDEGG 245 >UniRef50_B5IA62 DNA repair and recombination protein RadB n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IA62_9EURY Length = 234 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 22/235 (9%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 V+ I +G S+D L GG G I E+YG SGKT + L +EG +ID E Sbjct: 8 VDKIKSGCESIDSLLN-GGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYIDTE 66 Query: 98 HALDPIYARKLGVDID---NLLCSQPDTGEQALEICDALA----RSGAVDVIVVDSVAAL 150 + +LG + D +L + Q EI + + + +++VDS+ Sbjct: 67 G-ISMERFSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMTEF 125 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 E + + ++ + L ++ N +I NQ+ M P Sbjct: 126 YR---AERGVEEDLSAKKRSSLAWQLSILNSIARKKNIAVIITNQVYMDTTTKELRPI-- 180 Query: 211 TGGNALKFYASVRLDIRRIG-------AVKEGENVVGSETRVKVVKNKIAAPFKQ 258 GG+ L A + +R+IG +K G + R + + + K+ Sbjct: 181 -GGHTLHHNAKTIIFLRKIGNGYREALLIKHRSLPEGIKARFIIGSDGLYPEEKE 234 >UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=RADB_METST Length = 232 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 27/238 (11%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I T S SLD LG GG+ G I + YGP SGKT + L+++ A + G ++D E L Sbjct: 13 IPTNS-SLDKLLG-GGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSKAIYMDTEGGL 70 Query: 101 DPIYARK-----LGVDIDNLLCSQPDTGEQAL----EICDALARSGAVDVIVVDSVAALT 151 ++ G N+ +P + ++ + I D L + ++D++++DS+ AL Sbjct: 71 SLERIQQIAGTDFGSISKNIYILEPKSFDEQILDIQNIEDILKKDKSIDMLIIDSIVALY 130 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 211 + D + + + M KL ++ N ++ NQI Sbjct: 131 -------RVEDGDPSEINKRLGRLMAKLLRLSREYNVAIVITNQIYSPFDSDDLI-IEPI 182 Query: 212 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 GG LK+++ + ++I + V + + ++K AP + +F+I+ I Sbjct: 183 GGTVLKYWSKIIIEIEKS--------VDSLKRTATLQRHKTKAPGQSIKFEIIDRGII 232 >UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Tax=Methanomicrobiales RepID=RADB_METMJ Length = 224 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 98/242 (40%), Gaps = 30/242 (12%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 M + +STGS + D LG GGL I +IYG +SGK+TL L A R G + +ID Sbjct: 1 MKTDRVSTGSTAFDDLLG-GGLERRAITQIYGEPASGKSTLCLMAAVATLRAGNSVVYID 59 Query: 96 AEH----ALDPIYARKLGVDIDNLLCSQP-DTGEQALEICDA----LARSGAVDVIVVDS 146 E I G D L +P D +Q I DA V ++V+DS Sbjct: 60 TEGFSVERFTQIAGENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVGLLVMDS 119 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 AL E ++G A R +S M KL G K+ + ++ NQI M + + Sbjct: 120 ATALYR---TELDLGRE----AIRKLSHHMIKLLGLAKKYDIPVLITNQIYMDVE---RD 169 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 GG AL+ + + + + + + R + K++ +F I Sbjct: 170 RVAGLGGTALEHLSKAIIRLEKKDSAR----------RAMLRKHRSRPEGLSFDFTITED 219 Query: 267 EG 268 Sbjct: 220 GI 221 >UniRef50_C9DGK5 UvsX RecA-like recombination protein n=1 Tax=Deftia phage phiW-14 RepID=C9DGK5_9CAUD Length = 366 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 118/329 (35%), Gaps = 23/329 (6%) Query: 16 GQIEKQFGKG--SIMRLGEDRSMDVETISTGSLSLDIALGA---GGLPMGRIVEIYGPES 70 ++ K GK +++ + DV S+ L++ L GG+ G I ++ G Sbjct: 8 ARLIKAAGKSHATMLSASDLGRKDVICHSS-IPILNVMLSGELNGGITCG-ITQVVGDSR 65 Query: 71 SGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIYARKLGVD-IDNLLCSQPDTGE--- 124 + KT + ++ + A C F D E + +L D + ++ + E Sbjct: 66 TFKTLICIEAVVAYLEHDPDAICIFFDCEFGGLAAFEARLTPDQLARVVHVPFEDLEDLK 125 Query: 125 -QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG--LAARMMSQAMRKLAG 181 Q ++ + + R V + VDSV+ + K E E + + AR M+ R + Sbjct: 126 FQMTKMVENVQRGEKV-IFFVDSVSQVASKKEAENALNSNEAADLTRAREMNSFFRIITP 184 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGE--NVV 239 L N L IN + G F +S L K+ + Sbjct: 185 KLNIRNIPLFVINSYYEDTTSNYAEVIIKGGKQI--FLSSDALWFVTRAQEKDEATKELT 242 Query: 240 GSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIE-KAGAWYSYKGEK 298 G ++K++ + ++ Y GI+ L++L + ++ +Y + + Sbjct: 243 GWSFNYAMMKSRFCREKSKMSIRVTYAGGIDRTSSLLELARESGYLDMPTSGFYQFNAKV 302 Query: 299 I-GQGKANATAWLKDNPETAKEIEKKVRE 326 I G + + + E +++ Sbjct: 303 IPGATEKKFRKKELQDTANWEHWELLLKQ 331 >UniRef50_Q3LW29 DNA recombination and repair protein n=1 Tax=Bigelowiella natans RepID=Q3LW29_BIGNA Length = 331 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 106/283 (37%), Gaps = 41/283 (14%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 D +K L+ A ++ F S ++ IST + ++D L GG+ + Sbjct: 59 DRKAEKILSLAKKRVPVGF---STLKNYLKTKKQQFHISTLNKTIDNLL-EGGIESSSVT 114 Query: 64 EIYGPESSGKTTLTLQVIAAAQREG------KTCAFIDAEHALDPIYA----RKLGVDID 113 EI+G +GKT + +A + K +ID E P K ++ D Sbjct: 115 EIFGESKTGKTQFCHILCVSAMVDNYSFVQTKKVIYIDTEGNFRPERLIEISEKFKINFD 174 Query: 114 ----NLLCSQPDTGEQALEICDALARSGAV---DVIVVDSVAA-LTPKAEIEGEIGDSHM 165 N+ ++ E ++ A A A +I+VDS A L + GE+ Sbjct: 175 FLINNVFYARAFNTEHQFQLLVAAASITAFSNVALIIVDSCTALLRTEYVGRGEL----- 229 Query: 166 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK----IGVMFGNPETTTGGNALKFYAS 221 L ++ + +R + ++ N ++ NQ+ + + GG+ + Y + Sbjct: 230 FLRQTLLGKFLRNIQRLGEECNIAILLTNQVVTSNLDGMTFSAASNLKPIGGHIMAHYTN 289 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 R+ +++ S+ V V + K+ +F I Sbjct: 290 TRIWLKKRT----------SQYNVMKVISSSKLSEKEVKFIIQ 322 >UniRef50_A6R196 DNA repair protein RAD51 n=3 Tax=Eukaryota RepID=A6R196_AJECN Length = 297 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 92/259 (35%), Gaps = 55/259 (21%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG-- 88 G + ++ GS LD L AGG+ G I EI+G +GK+ + + Q Sbjct: 66 GISEQKATKILAEGSKQLDTLL-AGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDM 124 Query: 89 ----KTCAFIDAEHALDPIY----ARKLGV----DIDNLLCSQPDTGEQALEICDALARS 136 C +ID E P A++ G+ +DN+ ++ + L++ + ++ Sbjct: 125 GGGEGKCLYIDTEGTFRPTRLLAVAQRYGLVGDEVLDNIAYARAYNSDHQLQLLNQASQM 184 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 E+ LA + MRKL + ++ NQ+ Sbjct: 185 MC--------------------ELSSRQNHLA-----KFMRKLRTLADEFGIAVVITNQV 219 Query: 197 RMKIGV-----MFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 ++ +P+ GGN + ++ RL +++ ETR+ + + Sbjct: 220 VAQVDGGPSAMFNPDPKKPIGGNIIAHASTTRLSLKKGR----------GETRICKIYDS 269 Query: 252 IAAPFKQAEFQILYGEGIN 270 P F I G + Sbjct: 270 PCLPESDCLFAINEGGIGD 288 >UniRef50_Q1IJA5 RecA/RadA recombinase-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJA5_ACIBL Length = 252 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 18/207 (8%) Query: 9 KALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGP 68 + QIE + + +TG +LD L GGLP+G + E++GP Sbjct: 2 STASLLRSQIESALAPRVPVVFSTCAQVSRPVQTTGIAALDR-LTGGGLPVGAVCELFGP 60 Query: 69 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE---- 124 E SG+T++ L +A REG CA+ID +LDP A GVD+ LL + E Sbjct: 61 ECSGRTSVALAFLAQITREGTACAWIDVADSLDPESAAACGVDLRRLLWVRCSDAETRRA 120 Query: 125 ---------QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 QAL D + ++G +V D + A+ P+ + + AA +QA Sbjct: 121 RGKMWSRLDQALRAADLVLQAGGFGAVVFD-MGAVPPEKALRVPLASWFRFRAAAERTQA 179 Query: 176 MRKLAGN---LKQSNTLLIFINQIRMK 199 L K + L + ++++R + Sbjct: 180 TFLLLSQVSCAKSCSALQLKLDRLRTR 206 >UniRef50_O27728 DNA repair and recombination protein radB n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=RADB_METTH Length = 234 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 32/241 (13%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 89 +GE+R + E+ S+D LG GG+ I + YGP SGKT +T+++ R GK Sbjct: 7 MGENRRIPTES------SIDRILG-GGVERRTITQFYGPPGSGKTNITIKLAVETARRGK 59 Query: 90 TCAFIDAEHALDPIYARKLGVDI-----DNLLCSQPDTGEQALEICDA-----LARSGAV 139 FID E L R++ DI D+++ +P + + E + Sbjct: 60 NTVFIDTEGGLSVERIRQVSGDIFDRVADSIIVFEPSSFTEQGEALQRTFSFLKTHGDST 119 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 D++V+DS AL E + +G ++ Q ++ + + NQI Sbjct: 120 DLVVLDSAVALYRLKEGNASSFNLDLGRQMFLLLQ-------MARRFDLAAVITNQIYSI 172 Query: 200 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--------GENVVGSETRVKVVKNK 251 G + GG L++++ V +++ E + GS ++V + Sbjct: 173 TGDDGREYVSPVGGTLLRYWSKVMVELEMGERPGERFAVLRRHRNRLEGSRVGFRIVADG 232 Query: 252 I 252 I Sbjct: 233 I 233 >UniRef50_A1RYZ3 Rad51-like protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RYZ3_THEPD Length = 315 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 101/244 (41%), Gaps = 30/244 (12%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCA 92 E+++TG +LD L GGL I E G SGKT L Q+ AQ G Sbjct: 83 ESLTTGVKALDELL-EGGLVTQEIYEFAGEYGSGKTQLCHQLSVTAQLPPSRGGLGGKVV 141 Query: 93 FIDAEHALDPIY----ARKLGVD--IDNLLCSQPDTGEQALEICDALAR---SGAVDVIV 143 ++D E P A + GV+ ++ + ++P + ++ E+ + G V ++V Sbjct: 142 YVDTEGTFSPSRIERIAERFGVEGALEGVYVARPISVDELEELVIKGLKPLLKGGVKLVV 201 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DSV AL +A+ G + + + ++ A+ L + + +++ NQ+ Sbjct: 202 IDSVIALY-RAQFRGR---EWLAMRQQRINYALDWLKRLARVYSIVVVITNQVVSVPSNW 257 Query: 204 FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 + GGN + ++ R +++ G ++V+ + A+F+I Sbjct: 258 GVAVKLPAGGNIIAHASTHRFLMKK----------AGDSWLIEVLDSPRLPKGATAQFEI 307 Query: 264 LYGE 267 Sbjct: 308 RDDG 311 >UniRef50_Q18EU1 DNA repair and recombination protein radA n=165 Tax=Halobacteriaceae RepID=RADA_HALWD Length = 343 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 105/304 (34%), Gaps = 63/304 (20%) Query: 6 NKQKALAAALGQIE-KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + AA + F G+ + R ++ +S +D LG GG+ I E Sbjct: 49 TASDIINAARDAADVGGFETGAAVL---QRREEIGKLSWKIPEVDELLG-GGIETQSITE 104 Query: 65 IYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL--GVD----- 111 +YG +GK+ +T Q+ Q G F+D+E P + G+D Sbjct: 105 VYGEFGAGKSQVTHQMAVNVQLPPEHGGLGGAAIFVDSEDTFRPERIDDMLRGLDDEIIT 164 Query: 112 -------------------------IDNLLCSQPDTGEQALEICD---ALARSG-----A 138 +D++ ++ + + + LAR Sbjct: 165 DLLERREIEGTPGDDETMKALLDSFLDHIHVAKAFNSNHQILLAEKAKELARDNQDSGFP 224 Query: 139 VDVIVVDSVAA-LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 197 V ++ VDS+ A + G + + +++ + L NT ++ NQ+ Sbjct: 225 VRLLCVDSLTAHFRAEYVGRGSLAERQQK-----LNKHLHDLMRIGDLYNTAVLVTNQVA 279 Query: 198 MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK------EGENVVGSETRVKVVKNK 251 FG+P GGN L ++ R+ +R+ K + N+ E ++V Sbjct: 280 SNPDSYFGDPTQPIGGNILGHTSTFRMYLRKSKNDKRIVRLVDAPNLADGEAVMRVKDAG 339 Query: 252 IAAP 255 + Sbjct: 340 LKPE 343 >UniRef50_A5UKT8 DNA repair and recombination protein radB n=4 Tax=Methanobrevibacter RepID=RADB_METS3 Length = 234 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 100/243 (41%), Gaps = 27/243 (11%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 96 D I T S +D L GG+ G + +I+GP SGK+ ++L + ++GK ++D Sbjct: 9 DNHKIPTNS-GIDNLL-DGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYVDT 66 Query: 97 EHALDPIYARKL-GVD----IDNLLCSQPDTGEQALEICDAL-----ARSGAVDVIVVDS 146 E + +++ G D ++N++ +P + + E + VD+ V+DS Sbjct: 67 EGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLCVLDS 126 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 AL + D + + + M LA + + ++ NQI + Sbjct: 127 AVALY-------RVDDMKSSRLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDDDNKD 179 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 GG L++++ + + R N ++ + +++ KQA F+I+ Sbjct: 180 VVKAVGGTILQYWSKTIIQLER--------NDEFNKRVATLKRHRSIGEGKQATFKIVER 231 Query: 267 EGI 269 I Sbjct: 232 GII 234 >UniRef50_Q12U80 DNA repair and recombination protein radB n=8 Tax=Archaea RepID=RADB_METBU Length = 225 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 25/236 (10%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E + + LD LG GG G + +I+G SGKT + LQ+ ++GK FID E Sbjct: 6 EQLLSSCKPLDELLG-GGFESGVVTQIFGEAGSGKTNICLQLAIECVKKGKKAIFIDTEG 64 Query: 99 ALDPIYARKLGVDIDN-----LLCSQPDTGEQALEICD--ALARSGAVDVIVVDSVAALT 151 L +++ + ++ +P + E+ + V VI+VDS A Sbjct: 65 -LSADRFKQIAGENARKIAQDIIIFEPHSFEEQYSAVRETEKISTENVGVIIVDSATAYY 123 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 211 E + DS + R +S + L ++ + +++ NQ+ I N Sbjct: 124 R---FELDDEDSSIRTR-RELSNQIGFLHSLARKRDIVVVITNQVYSDIKS---NSLKPI 176 Query: 212 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 267 GG++L+ + + + + G GS R K+ K++ EF I Sbjct: 177 GGSSLEHISKTIIQLEKTG--------TGSR-RAKIWKHRSRPEGTTCEFTITADG 223 >UniRef50_Q01QX0 RecA domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QX0_SOLUE Length = 224 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 33/238 (13%) Query: 18 IEKQFGKGSIMRLGED--RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 ++KQF S++ +D + E + TG +D A GGLP G + EI GP SSG+T+ Sbjct: 6 LKKQF--ESVLGGAQDWQSRPEPELVPTGVADVDSA--TGGLPRGCLTEIVGPASSGRTS 61 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP-DTGEQALEICDALA 134 L L ++AAA +TCA +DAE A P A GV + LL + + E AL+ D L Sbjct: 62 LLLSILAAATARQETCALVDAEDAFAPHSAADAGVQLSRLLWVRCGHSAEHALKAADLLI 121 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 + G ++V+D +GD+ A R+ + +L ++ + T+L+ I Sbjct: 122 QGGGFGLVVMD--------------LGDTAPATARRISLTSWFRLRRAVEHTPTVLLSIA 167 Query: 195 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKI 252 + + G + ++ R R + G + R + +K + Sbjct: 168 R---QANAKTCASLVIECGRRQERWSGTRHVSRLLR---------GFDVRAQSMKRRT 213 >UniRef50_Q18FI4 DNA repair and recombination protein RadB n=2 Tax=Halobacteriaceae RepID=Q18FI4_HALWD Length = 257 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 88/266 (33%), Gaps = 46/266 (17%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 +STG SLD LG GG G + ++YGP ++GKT + L ++D E Sbjct: 3 RLLSTGCQSLDSLLG-GGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTEG 61 Query: 99 ALDPIYARKL-------------GVDIDNLLCSQPDTGE-QALEICDALARSGAVDVIVV 144 + R++ ++ S E QA + D + D+I++ Sbjct: 62 -ISSDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIIL 120 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAA------------------RMMSQAMRKLAGNLKQS 186 DS G ++++G R ++ + L ++ Sbjct: 121 DSATGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKH 180 Query: 187 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 246 N ++ NQ+ P GG L+ + L + R G + R Sbjct: 181 NLAVVITNQVFTDPDTDRVRP---LGGYTLEHWTGAVLRLERFR---------GGKRRAT 228 Query: 247 VVKNKIAAPFKQAEFQILYGEGINFY 272 + K++ + F I + Sbjct: 229 LEKHRSKPTGESVTFVITDTGVADHE 254 >UniRef50_Q5JET4 Pko radA intein n=2 Tax=Euryarchaeota RepID=RADA_PYRKO Length = 836 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 38/215 (17%) Query: 74 TTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL----GVDID----NLLCSQ 119 T L + Q+ G + +ID E+ P +++ G+D + N+ ++ Sbjct: 632 TQLAHTLAVMVQKPPEEGGLGGSVIWIDTENTFRPERIKQIAENRGLDPEETLKNIYVAR 691 Query: 120 PDTGEQAL-------EICDALARSG-AVDVIVVDS-VAALTPKAEIEGEIGDSHMGLAAR 170 + EI A S V ++VVDS +A + G + + LA Sbjct: 692 AFNSNHQMLLVEKAEEIIKEKAESDRPVKLLVVDSLMAHFRAEYVGRGTLAERQQKLA-- 749 Query: 171 MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 230 + + L + + NQ++ K FG+P GG+ L A++R+ +R+ Sbjct: 750 ---KHLADLHRLADLYDIAVFVTNQVQAKPDAFFGDPTRPVGGHILAHSATLRVYLRKGK 806 Query: 231 AVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILY 265 A K RV + + P +A F+I Sbjct: 807 AGK----------RVARLIDSPHLPEGEAVFRITE 831 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 9 KALAAALGQIEKQFGKGSIMRLGEDRSM--DVETISTGSLSLDIALGAGGLPMGRIVEIY 66 K + AA G+ MR E + ISTGS +LD LG GG+ I E++ Sbjct: 88 KIIQAAREAANI----GTFMRADEYMKRRTTIGKISTGSKALDKLLG-GGIETQAITEVF 142 Query: 67 GPESSGK 73 G SGK Sbjct: 143 GEFGSGK 149 >UniRef50_A4FYL0 DNA repair and recombination protein radB n=10 Tax=Methanococcales RepID=RADB_METM5 Length = 216 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 92/212 (43%), Gaps = 19/212 (8%) Query: 52 LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD 111 L G + I +IYGP GKT + + + A GK +ID E +L ++L Sbjct: 5 LLNGNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLSEQ 64 Query: 112 -----IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG 166 + +++ +P + E+ E + + + +IV+D + +L + E+ I ++ Sbjct: 65 DSDELLKSIIIYEPSSFEEQSEALEKIFFLENIGLIVIDGIVSLY-RLELCDNINENTK- 122 Query: 167 LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 226 RM+ + + L + N+ ++ NQ++ I N GG L++++ + + Sbjct: 123 -LNRMLGKQISNLLKVARMKNSGILITNQVKDSI-----NGIEPAGGRLLEYWSKSIIKL 176 Query: 227 RRIGAV------KEGENVVGSETRVKVVKNKI 252 + ++ K G R ++V+N + Sbjct: 177 EKTESIRKLTLEKHRHAKEGENLRFRIVQNGL 208 >UniRef50_D0NZ01 DNA repair and recombination protein radA, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ01_PHYIN Length = 306 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 105/274 (38%), Gaps = 48/274 (17%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 + K L A + ++ G S L + + I+TGS LD LG GGL + E+ Sbjct: 69 KRVKLLHAGKKMMPEKSGFVSASSLYQQSQSRI-FITTGSQQLDQILG-GGLETMSVTEV 126 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 +G +GKT L P L DN++ ++ + + Sbjct: 127 HGEFRTGKTQLCHT------------------GTFRPDPEDVL----DNIIVARAHSHDA 164 Query: 126 ALEICDAL------ARSGAVDVIVVDSVAALT-PKAEIEGEIGDSHMGLAARMMSQAMRK 178 +++ L G ++++DSV AL GE+ + + ++Q + + Sbjct: 165 QMDLVVKLGVLFADPDQGPFRLLIIDSVTALFRTDFSGRGELSERQ-----QRLNQHLAR 219 Query: 179 LAGNLKQSNTLLIFINQIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGE 236 L + ++ N ++ +NQ+ V+FG+ GG+ + R+ +++ A Sbjct: 220 LVKHAEEFNIAVLVVNQVMADPVANVLFGSEMKPVGGHVMSHGVHTRVLMKKGRA----- 274 Query: 237 NVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 E R+ V + P + Q+ G + Sbjct: 275 -----ENRICKVIDSPCMPEAECSIQLYEGGVTD 303 >UniRef50_C6A0N1 DNA repair and recombination protein radB n=9 Tax=Thermococcaceae RepID=RADB_THESM Length = 228 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 35/246 (14%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99 ++TGS +LD LG GG+ G + ++YGP ++GKTTL +Q+ EGK A+ID E Sbjct: 1 MLTTGSKNLDALLG-GGIDKGILTQVYGPFATGKTTLAMQI--GLLNEGK-VAYIDTEGG 56 Query: 100 LDPIYARKL----GVD----IDNLLCSQPDTGEQALEICDALAR--SGAVDVIVVDSVAA 149 P K+ G+D + L + ++ + L + + +IVVDS+ Sbjct: 57 FSPERLAKMVESRGMDSNSTLQKFLIFEAFDFKEQKKTISNLKKIVNEKFSMIVVDSITN 116 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 209 E + + + + ++ L ++ N +I NQ+ P Sbjct: 117 HYRVEEKKSSMTTD--------LGKQLQVLLWLARKYNLAVIVTNQVYFDSKQNALKPLA 168 Query: 210 TTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 + + + L + ++ G V + +++ F+I +GI Sbjct: 169 E---HIMGYKCKDILRLEKLRP--------GLRIAV-LERHRFKPEGGIVHFEIT-DKGI 215 Query: 270 NFYGEL 275 ++ Sbjct: 216 EDIEKI 221 >UniRef50_O58001 Pho radA intein n=30 Tax=Archaea RepID=RADA_PYRHO Length = 529 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 39/220 (17%) Query: 74 TTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL----GVDID----NLLCSQ 119 T L + Q + +ID E+ P R++ G+D D ++ ++ Sbjct: 325 TQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAKNRGLDPDEVLKHIYVAR 384 Query: 120 PDTGEQAL--------EICDALARSGAVDVIVVDSVAA-LTPKAEIEGEIGDSHMGLAAR 170 + +I + L V +++VDS+ + + G + + LA Sbjct: 385 AFNSNHQMLLVQQAEDKIKELLNTDKPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA-- 442 Query: 171 MMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 230 + + L + NQ++ + FG+P GG+ L A++R+ +R+ Sbjct: 443 ---KHLADLHRLANLYEIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGK 499 Query: 231 AVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 K RV + + P +A F+I +GI Sbjct: 500 GGK----------RVARLIDAPHLPEGEAVFRITE-KGIE 528 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 19/126 (15%) Query: 9 KALAAALGQIEKQFGKGSIMRLGED--RSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 K + AA G+ MR E + + ISTGS SLD LG GG+ I E++ Sbjct: 91 KIIQAARKAAN----LGTFMRADEYLKKRESIGRISTGSKSLDKLLG-GGIETQAITEVF 145 Query: 67 GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG---------VDIDNLLC 117 G SGK E T +++ + YA G V +DN+ Sbjct: 146 GEFGSGK---CFARDTEVYYENDTVPHMESIEEMYSKYASMNGELPFDNGYAVPLDNVFV 202 Query: 118 SQPDTG 123 D Sbjct: 203 YTLDIA 208 >UniRef50_B9RR28 DNA repair protein rad51, putative n=1 Tax=Ricinus communis RepID=B9RR28_RICCO Length = 294 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 54/280 (19%), Positives = 89/280 (31%), Gaps = 80/280 (28%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 I E K K + AA + F S + +++ I++GS LD L GG+ G Sbjct: 67 GISEAKVDKIIEAASKLVPLGFTSASQLHAQ---RLEIIQITSGSRELDKIL-EGGIETG 122 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQ---REG---KTCAFIDAEHALDPIY----ARKLGV 110 I EIYG SGKT L + Q +G +IDAE P A + G+ Sbjct: 123 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL 182 Query: 111 D----IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG 166 + ++N+ ++ + + A Sbjct: 183 NGADVLENVAYARAYNTDHQSRLLLEAASMM----------------------------- 213 Query: 167 LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFGNPETTTGGNALKFYASVR 223 ++ NQ+ ++ G GGN + ++ R Sbjct: 214 -------------------FGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 254 Query: 224 LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 L +R+ E R+ V + +A FQI Sbjct: 255 LALRKGR----------GEERICKVISSPCLAEAEARFQI 284 >UniRef50_Q6Y3G2 RecA (Fragment) n=1 Tax=Geobacter hydrogenophilus RepID=Q6Y3G2_9DELT Length = 158 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 64/85 (75%), Positives = 75/85 (88%) Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + RSGAVDV+V+DSVAAL PKAEIEGE+GDSH+GL AR+MSQA+RKL G + +SN + Sbjct: 1 EMFVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGIISKSNCCV 60 Query: 191 IFINQIRMKIGVMFGNPETTTGGNA 215 IFINQIRMKIGVMFG+PETTTGGNA Sbjct: 61 IFINQIRMKIGVMFGSPETTTGGNA 85 >UniRef50_B4DMW6 cDNA FLJ56732, highly similar to Meiotic recombination protein DMC1/LIM15homolog n=5 Tax=Eukaryota RepID=B4DMW6_HUMAN Length = 285 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 96/272 (35%), Gaps = 69/272 (25%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 K AA IE F + E R M V I+TGS D LG GG+ I E +G Sbjct: 71 DKIKEAANKLIEPGFL--TAFEYSEKRKM-VFHITTGSQEFDKLLG-GGIESMAITEAFG 126 Query: 68 PESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 127 +GKT L+ + GE + Sbjct: 127 EFRTGKTQLSHTLC-----------------------------------------GEHQM 145 Query: 128 EICDALA-----RSGAVDVIVVDSVAALTP-KAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 E+ D +A +G ++++DS+ AL GE+ + LA Q + +L Sbjct: 146 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA-----QMLSRLQK 200 Query: 182 NLKQSNTLLIFINQIRMKIGVMF---GNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 ++ N + NQ+ G +P+ GG+ L ++ R+ +R+ Sbjct: 201 ISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGR-------- 252 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 E R+ + + P +A F I G + Sbjct: 253 --GELRIAKIYDSPEMPENEATFAITAGGIGD 282 >UniRef50_Q1D5A2 Putative recA protein n=2 Tax=Cystobacterineae RepID=Q1D5A2_MYXXD Length = 290 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 8/150 (5%) Query: 11 LAAALGQIEKQFGKGSIMR--------LGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 ++AA ++ G GS++ L + + TG ++D L GGLP+G++ Sbjct: 1 MSAAEQRVGAGQGTGSVVEQLRERIRQLQAAPRRYLAVLRTGLSAVDALLPTGGLPLGQV 60 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 VE+ G +SG+T+L L +AAA +E + CA++D L A LGVD++ LL +P Sbjct: 61 VELCGEAASGRTSLALHAVAAAHQEARLCAWVDGPRELYSPSAAALGVDLERLLIVRPQA 120 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTP 152 EQ + LARSGA +V+D + P Sbjct: 121 SEQRIWAAVQLARSGAFACVVLDLTRGMNP 150 >UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B2S0C8_BORHD Length = 466 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 16/214 (7%) Query: 23 GKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 82 K I L + + +D TG D LGAG + +G + I G GK+T LQ+ + Sbjct: 52 SKSEIFSLKDFKQVDNVRYLTGIEEFDRVLGAG-IVIGSAILISGEPGIGKSTFLLQISS 110 Query: 83 AAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 140 +GK ++ E ++ I A +L + D L+ ++ D ++ + + +D Sbjct: 111 ILSLDGKNVLYLAGEESIPQIKLRANRLKISSDILITNEID-----VDALIEMLANIELD 165 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 +VVDS+ L + E++G +G + + KL K N L + + K Sbjct: 166 FMVVDSIQTLNSR-EVQGSLGG------VAQLKHCVYKLVEWAKGKNITLCLVGHV-TKD 217 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 234 G++ G +++ ++ + +R + A K Sbjct: 218 GILAGPKIIEHMVDSVFYFEEAKKSLRMLRATKN 251 >UniRef50_B9LPC6 DNA repair and recombination protein RadB n=7 Tax=Halobacteriaceae RepID=B9LPC6_HALLT Length = 235 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 88/246 (35%), Gaps = 41/246 (16%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I TG +D LG GG G + ++YGP ++GKT L L G +ID E L Sbjct: 5 IPTGCRPVDDLLG-GGFERGVVTQVYGPPAAGKTNLALAAAVEVAAGGDRALYIDTEG-L 62 Query: 101 DPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV------------------- 141 ++ N +PD E EI L S A D Sbjct: 63 SIDRFEQMAAGRAN----RPDVDETVEEIASRLVISEAYDFDDQREAVRDAEELAEEIEL 118 Query: 142 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 IV+DS GD+ G + R +++ + L ++ + ++ NQ+ Sbjct: 119 IVLDSATGFYRLE----RAGDTEGGESLRKVAKQVTHLLSLARRHDIAVVITNQVFTDPD 174 Query: 202 VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEF 261 + + GGN L + + + R G RV + K++ A F Sbjct: 175 S---DRDRALGGNTLNHWTGAIVRVDRFR---------GGNRRVTLEKHRSKPAGDTATF 222 Query: 262 QILYGE 267 QI+ Sbjct: 223 QIVADG 228 >UniRef50_Q8TWK1 RadA recombinase n=1 Tax=Methanopyrus kandleri RepID=Q8TWK1_METKA Length = 316 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 26/242 (10%) Query: 6 NKQKALAAALGQIEKQFGKGSIMR--LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 +K +A A + K + + L E++ DV I TG D +G GGLP G IV Sbjct: 54 TAKKIIADAREEASKGIMEAKTLADLLEEEKKRDV--IPTGIQGFDERMG-GGLPTGVIV 110 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD--------IDNL 115 +YGP +GK+ QV A A +EG++ +ID E+A P ++G D Sbjct: 111 GMYGPPGAGKSQFATQVAAHALKEGESVLYIDTENAFRPQRLLEIGGFKKDELKEVSDRF 170 Query: 116 LCSQP-------DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 168 + + ++ + A V+V+DS++ ++ + Sbjct: 171 VLRRIIDAAALRQYFDEKEGEFISEAYELTPKVVVIDSISQPFRPYSARDKLPER----- 225 Query: 169 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 228 +RM++ + L N L + ++ +G LK A+ R I Sbjct: 226 SRMIAHILNTLLKYCTAYNALGMVTTHVQANPDA-WGKRWQDVAPTVLKHIATYRFSIDY 284 Query: 229 IG 230 G Sbjct: 285 KG 286 >UniRef50_C1AAH5 RecA protein homolog n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAH5_GEMAT Length = 353 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 42 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 101 TG +LD ALG GG+P GRI E+ GP + GK+ L QVI G A+IDA L Sbjct: 28 PTGVPALDRALG-GGIPRGRITELVGPLAVGKSGLLRQVITQVLATGSWAAWIDATRTLA 86 Query: 102 PIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 P +G L+ + T +A D L RSG ++V+D +L Sbjct: 87 PEPWTGMG---ARLVVVRLPTPHRAAWTADLLLRSGVFGLVVIDGAPSL 132 >UniRef50_A3ZPQ5 Putative uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZPQ5_9PLAN Length = 237 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 E + A + +++Q + G R+ D+ STGS +LD L GG+ G ++E Sbjct: 2 EMHRDAKQETIAHLQRQIRQSEY---GGRRAADIT--STGSTALDELLPCGGVRRGGMIE 56 Query: 65 IYG-PESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 G +SG TL L +T ID+ + P LG+D+ +L +P T Sbjct: 57 WIGCTPASGAGTLALIAARHVCASNQTFLVIDSRRQISPAALANLGLDLAKILIVRPQTK 116 Query: 124 EQALEICDALARSGAVDVIVVD 145 ++A C+ R A+ ++ D Sbjct: 117 QEAWWACEEALRCKAIGLVWAD 138 >UniRef50_A3MXS9 Rad51-like protein n=6 Tax=Thermoproteaceae RepID=A3MXS9_PYRCJ Length = 314 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 88/244 (36%), Gaps = 22/244 (9%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + K L A+ ++ G + E RS TG D G+ I E Sbjct: 53 DRAVKILQQAIQRV----GTTRPLTARELRSQQRRVFKTGVSEFDEKTPWRGIREAFIYE 108 Query: 65 IYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALD----PIYARKLGVDIDN---- 114 G +GK+ L Q+ AA +G +ID E + A++ G+D+D Sbjct: 109 FAGEFGAGKSMLAHQLSVAALAQGFTTRVVYIDTEGTFNDGLVEAVAKRFGLDVDKALEA 168 Query: 115 LLCSQPDTGEQALEICD-ALARS--GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM 171 ++ QP Q +I L R + V+D++ AL +AE +G + + Sbjct: 169 IVVYQPANVVQLEQIVKFDLPRHIAEGCRLAVIDTITALY-RAEF---VGREMLAARQQR 224 Query: 172 MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 231 + + L + + + NQ+ F + GGN L + R + R Sbjct: 225 IHYLVDWLRRHARTFGLTSVLTNQVMDVPEA-FSVGKRPAGGNVLAHAVNARFMMARPNK 283 Query: 232 VKEG 235 K Sbjct: 284 AKAE 287 >UniRef50_C1F5L9 Putative uncharacterized protein n=2 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5L9_ACIC5 Length = 345 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 9/138 (6%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 I TG +D L GGLP+G + E+ GPE+SG+T L L + + G+ CA+ID Sbjct: 32 PMIPTGVAEMDAML-DGGLPVGAMTEMAGPETSGRTALALSFLRSLTDTGRACAWIDVSD 90 Query: 99 ALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV--------AAL 150 DP A +GVD+ +L + + A++ L S ++ S Sbjct: 91 TFDPESAAAVGVDLARVLWVRCGVPKAAMKPSRELQFSLPEKYLIAASTKKGVHGGGCGG 150 Query: 151 TPKAEIEGEIGDSHMGLA 168 P+ E++G G H L Sbjct: 151 HPRKEVKGLAGAVHELLR 168 >UniRef50_A8TH99 AAA ATPase n=1 Tax=Methanococcus voltae A3 RepID=A8TH99_METVO Length = 280 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 94/253 (37%), Gaps = 58/253 (22%) Query: 55 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKL------ 108 G + I +IYGP SGKT + + + + + +ID E +L +++ Sbjct: 8 GEIEKKTITQIYGPPGSGKTNICIIAMIKFAKNNQKVIYIDTEGSLSTERVKQICPQDSE 67 Query: 109 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 168 G+ N L +P T E+ + ++L + +I+VD +++L +E H Sbjct: 68 GI-FKNTLLCEPYTFEEQCNVIESLEAVENIGLIIVDGISSLYR---LELSNNVFHNTEL 123 Query: 169 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG--------------------------- 201 R +++ + L K+++T ++ NQ + IG Sbjct: 124 NRNLARQIHILNKIAKKNDTAVLLTNQAKDSIGYKSEPPTDYKNKDFSEENETNGKYGKY 183 Query: 202 -----------VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 + + TGG L +++ L + + + R+ + K+ Sbjct: 184 GDLKSNKISPKNSYDDSFEPTGGKLLAYWSKSILKLEKFK----------NFRRLTLEKH 233 Query: 251 KIAAPFKQAEFQI 263 + + +FQI Sbjct: 234 RFHKDGEYIDFQI 246 >UniRef50_UPI00005020FA similar to RAD51 homolog protein isoform 1 (LOC364752), mRNA n=2 Tax=Mammalia RepID=UPI00005020FA Length = 313 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 57/273 (20%), Positives = 98/273 (35%), Gaps = 39/273 (14%) Query: 1 MAIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPM 59 M++ E K K L A + F I L +TG+ LD L G + Sbjct: 62 MSVSEAKADKILTEAAKLVPMGF----ITALVSPTLFQNH--TTGTEELDKLL-QGRMET 114 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD--IDNLLC 117 G +EI+G + KT + + Q + D E + +DN Sbjct: 115 GSTIEIFGAFQTRKTQICHTLAVTWQ-------YNDTESTFRLELLLAVADSDVLDNEAY 167 Query: 118 SQPDTGEQALEI---CDALARSGAVDVIVVDSVAALT-PKAEIEGEIGDSHMGLAARMMS 173 +Q Q +++ A+ ++VDS AL + GE+ M + Sbjct: 168 AQGFNTNQQIQLLYQASAMMVEPRYAFLIVDSATALYRTEYSCHGELSARQMH------A 221 Query: 174 QAMRKLAGNLKQSNTLLIFINQIRMKIGV--MFGNPETTTGGNALKFYASVRLDIRRIGA 231 + +R L + ++I NQ+ ++ MF GGN + ++ RL +R+ Sbjct: 222 RFLRMLLQLAHEFGVIVITTNQVVAEVDGAAMFVADPKKIGGNIITHESTTRLYLRKGR- 280 Query: 232 VKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 ETR+ + + P K+A I Sbjct: 281 ---------GETRICKIYDSPCLPEKEAMLAIN 304 >UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquificales RepID=RADA_AQUAE Length = 444 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 32/250 (12%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 ++ + + + E +TG SLD ALG GGL G+++ I G GK+TL LQ+ Sbjct: 52 VLPVTDWEKEEHERETTGFESLDNALG-GGLVKGQVILIAGEPGIGKSTLLLQISDRV-A 109 Query: 87 EGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 GK ++ E + I A++LG++ +NLL E+ L+ + ++V+ Sbjct: 110 NGKKVLYVSGEESGTQIALRAKRLGINNENLLVYPEVNLEKILQTLEK----EKPSLLVL 165 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DSV + + +E G + + ++ K+ N + QI K G + Sbjct: 166 DSVQTIFSER-LESSAGSVS------QVREVTYRITEFCKEKNVPAFIVGQI-TKEGSIA 217 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 G + + + R + RI VKV+KN+ + + A F++ Sbjct: 218 GPKVLEHIVDTVLQFEGERFNFYRI---------------VKVIKNRFGSTGEIAVFKMT 262 Query: 265 YGEGINFYGE 274 +G+ E Sbjct: 263 -DKGLEEVPE 271 >UniRef50_A1RY65 Rad51-like protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RY65_THEPD Length = 250 Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 32/213 (15%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAF 93 ISTG SLD L GG+ +G I E G +GKT + Q+ Q + Sbjct: 29 RISTGVRSLDDLL-EGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGGLNARALY 87 Query: 94 IDAEHALDPIY----ARKLGVD----IDNLLCSQPDT---GEQALEICDALARSGAVDVI 142 +D E P AR G+D ++N++ ++ + E+ L A G V ++ Sbjct: 88 VDTEGTFRPERIVQIARARGLDPEKTLENIIYARAYSLGGLEELLSKALAEVVKGDVGLV 147 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 202 V+D L + + G AR + + L + + + ++ Q+ Sbjct: 148 VLDEATRLVRASGLGA-------GERARAYAAIVSSLEAVAE-AGSAVVVARQV------ 193 Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 +FG+ GG AL YA + + + + G+ +E Sbjct: 194 VFGDGVRPAGGAALDGYAHLSVFLSKRGSAREA 226 >UniRef50_C5KD76 Meiotic recombination protein DMC1, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KD76_9ALVE Length = 259 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 27/234 (11%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 M + + + +STG SLD L GGLP+ ++VE+YGP SGKT + + + A Sbjct: 1 MSARDYGHLQRQYVSTGMPSLDAFL-RGGLPVAQLVELYGPAGSGKTQVLMSIAVAVLAG 59 Query: 88 GKTCAFIDAEHALDPIYARKL-----------GVDIDNLLCSQPDTGEQALEICDALA-- 134 + D+E L P + L G+ + + + D + +AL Sbjct: 60 EGRVFWFDSERTLHPERFQSLCERRSPHAPIEGM-LSRMAIKECDDLLDLIRGVEALKTI 118 Query: 135 --RSGAVDVIVVDSVAA--------LTPKAEIEGEIGDSHMGLAAR--MMSQAMRKLAGN 182 G ++V+DSVAA + + + + G LA R ++++ L G Sbjct: 119 PTCEGVPCLVVIDSVAAAARCTEDIILSRMQGDKSEGSDAAVLAERQSLLNRLAVALKGA 178 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGE 236 ++ N + + G +VRL I R+ + E Sbjct: 179 AWVQRAAVVVSNHVTADFDSNQSDAFKPALGLTWSHAVNVRLMINRVEESSQRE 232 >UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q6C269_YARLI Length = 421 Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 28/193 (14%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--- 87 +R ++ ISTG +D + GG P G + E+ G ++GK+ LQ+ Q Sbjct: 81 DSERERPLDAISTGVRKIDTVMN-GGFPTGTLCEVAGESAAGKSHFLLQLCVNVQLARGE 139 Query: 88 ---GKTCAFIDAEHALDPIYARKL----------GVDIDNLLCSQPDTGEQALEICD--- 131 GK FI E L+ ++ + + ++ EQ + Sbjct: 140 GGLGKKAVFISTESGLETRRLVQMMDHVIKLGHDNISLHHVSFIACKDLEQQDRVFQYNL 199 Query: 132 -ALARSGAVDVIVVDSVAALTPKAEI--EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 188 L + ++V+DS+AA E+ +G+ + + + + L G ++ N Sbjct: 200 PNLLEDSSYGLVVIDSLAAHYRSEELTSKGDFSSRD-----KRLLRTLHHLKGLARKHNV 254 Query: 189 LLIFINQIRMKIG 201 ++F NQI G Sbjct: 255 AVVFANQISALPG 267 >UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacteria RepID=A1SXY3_PSYIN Length = 470 Score = 97.5 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 124/325 (38%), Gaps = 49/325 (15%) Query: 9 KALAAALGQIEKQFG-----KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 K++ AA+ + K G + R+ + + +STG LD LG GG+ +G +V Sbjct: 46 KSVNAAVTR-NKNAGYTGALSNGVQRISGVQIENATRVSTGLSELDRVLG-GGITLGSVV 103 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR-----KLGVDIDNLLCS 118 I G SGKTTL L +A + + ++ AE +L R KL + DN L S Sbjct: 104 LISGDPGSGKTTL-LTKVAEVMSQSMSTLYVTAEESLSQWAKRGIERLKLNFNEDNFLLS 162 Query: 119 QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 178 D E ++ C V ++ DS+ A G + + + A+++++ Sbjct: 163 DTDCIEDIVDQCLE----NNVRFLIADSIQAFESNQAEGTAGGVTQVKICAKILNR---- 214 Query: 179 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 KQ LI + Q+ + G LK + I V + Sbjct: 215 ---LCKQHGITLILVGQVNKNSQM--------AGPQTLKHIIDTAIHIE----VNDASVR 259 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 298 + ++ KN+ + FQ+ + VD + L +G+ ++G Sbjct: 260 I-----LRADKNRFGDTEQVGIFQMTEKGMFS-----VDNPSRLFL---SGSEEHFEGSA 306 Query: 299 IGQGKANATAWLKDNPETAKEIEKK 323 I K A L + A E+E + Sbjct: 307 ISVIKDGARNLLIEIQALATEVEGE 331 >UniRef50_A9A126 RecA/RadA recombinase-like protein n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A126_NITMS Length = 217 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 22/225 (9%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99 ISTG LD +L GG+P G IV+I+G +GKT L LQ+ + ++G + D Sbjct: 1 MISTGLEKLDKSL-FGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGHVLYFDTTGG 59 Query: 100 LDPIYA-------RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 152 P ++ + S+ + + + R+ +IV+D++ L Sbjct: 60 FRPERILDIQKESESQSDFLNQITVSRLTNTSEQINSIKNIERN--FSLIVIDNITDLFS 117 Query: 153 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG 212 E + D + + + M LA + ++ N IR G E Sbjct: 118 -YEYQK---DESIFEKNSLFMKYMHDLANFAISNRIPIVVTNMIRNLEG-----KEIENM 168 Query: 213 GNALKFYASVRLDIRRIGAVKEGE---NVVGSETRVKVVKNKIAA 254 +A+ + +++ + + + +G+ + + + K ++ Sbjct: 169 KSAIDPFTHIKIHLTKNSSKFDGKIYSPFIENSFSYTIDKLGLSP 213 >UniRef50_C5A470 RecA family AAA ATPase n=2 Tax=Thermococcus RepID=C5A470_THEGJ Length = 449 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 19/171 (11%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 +R E E I TG D LG GG G I I GP SGKT L + + ++ Sbjct: 226 LRFAERNIQTKERIKTGIPKFDELLG-GGFYKGSINLIAGPTGSGKTIFALTIASNMAKQ 284 Query: 88 GKTCAFIDAEHALDPIY--ARKLGVDIDNLLCS---QPDTGEQALEICDALARSGAVDVI 142 G ++ E AL + + LG+D D + S + T Q + L R + +++ Sbjct: 285 GFRVLYMTFEEALGALLGTTKNLGLDGDFKVISLIPEAMTPIQYYALIKRLLRENSSEIL 344 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 193 +DS++A+ E E I +A+R L K+ N LI Sbjct: 345 FIDSISAMQSHMEEEDFI-------------KAIRYLQLLSKEKNITLIMT 382 Score = 67.1 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 27/204 (13%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E I TG LD AL GG G + I G +GKT L + V+ ++G A+I Sbjct: 2 ELIPTGIPGLDKALS-GGFSRGTSILIAGNPGTGKTHLAVHVLFNNMKKGLKGAYISFAE 60 Query: 99 ALDPIYARKL--GVDID--------NLLCSQPDTGEQALEICDALARSG---AVDVIVVD 145 Y + G++ + E+ + D L + D+IV D Sbjct: 61 TKRQFYQNAMESGLNFEEAEKKGVFKFYDMLTMPKEEMKDFLDFLIQDLVEWKPDIIVFD 120 Query: 146 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI-RMKIGVMF 204 S+ L + AA M S + + N+L I I++I + V F Sbjct: 121 SITVL------------GQIFGAAMMRSFLHSIIGRLVNALNSLAILIDEIPYGERRVGF 168 Query: 205 GNPETTTGGNALKFYASVRLDIRR 228 G E G + R I+R Sbjct: 169 GVEEFVVDGVIVLEMERQREVIKR 192 >UniRef50_UPI000180D2F5 PREDICTED: similar to Rad51 homolog c n=1 Tax=Ciona intestinalis RepID=UPI000180D2F5 Length = 391 Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 89/264 (33%), Gaps = 49/264 (18%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFI 94 IST S +LD LG GG+ +G I EI G S+GKT L Q+ A G +I Sbjct: 19 ISTFSSNLDSLLG-GGVKVGSITEIAGESSTGKTQLCFQLATNAHIHTKYGGVGGETVYI 77 Query: 95 DAEHALDPIY-----------------ARKLGVD--IDNLLCSQPDTGEQAL----EICD 131 D E A + D + + + Q L ++ + Sbjct: 78 DTEMTFKTERIGQIAQAMVHHFERTKHATDMSADTVLSGIYLFRCIKMVQLLAVSYQLFE 137 Query: 132 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 191 + V +++VDS+A + M + ++++ L N ++ Sbjct: 138 FVKSHPKVKLVIVDSIAQXXR--------AEEDMKIRNKLLNNLAANLRKIASLLNVAVV 189 Query: 192 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 +NQ+ + + G + +L + ++ + R ++ Sbjct: 190 LVNQVTTRFDEYGNSCMVPALGESWSNIPHTKLFLYKLQGL-----------RFALLTKS 238 Query: 252 IAAPFKQAEFQILYGEGINFYGEL 275 P ++ + I + ++ Sbjct: 239 PTQPRRKVNYVITSNGIRDTAHDV 262 >UniRef50_A9FIX3 RecA recombinase homolog n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIX3_SORC5 Length = 269 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 23/212 (10%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT-LTLQVIAAAQRE---- 87 + +T+ G ++ AL GGLP G +VE+ P G++T L L A+AQ E Sbjct: 24 EFEARAKTLPLGLREINDALPEGGLPRGGVVELAAPRGLGRSTSLALSACASAQAEARLR 83 Query: 88 ------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 141 G CA+ID +L + VD+ LL +P E ++ +A S A V Sbjct: 84 GTSATAGAWCAWIDPSGSLYAPAVARAQVDLSRLLVVRPP-PEVLAKVAVRMAMSRAFAV 142 Query: 142 IVVD------SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 +V+D + K E AR ++ +RKLA ++ S+ ++ + Sbjct: 143 LVIDVAGVPGAFGQGAGKGERSAPGAGRREEDLARWVN-VVRKLALAIEGSDGTILLL-- 199 Query: 196 IRMKIGVMFGNPETTTGGNALKFYASVRLDIR 227 P L+ A RL +R Sbjct: 200 --TDRQAARPMPLPVAMRLELEQVAENRLMVR 229 >UniRef50_C1FDH7 Rad51 DNA recombinase 3 n=4 Tax=Mamiellales RepID=C1FDH7_9CHLO Length = 362 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 55/289 (19%) Query: 9 KALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGP 68 KAL + K + L E+ T S LD LG GG+ +G I E+ G Sbjct: 71 KALRLGIEGTALAGAKSASEILYEESRKLAVF--TFSKDLDDLLG-GGVAVGEITELCGC 127 Query: 69 ESSGKTTLTLQVIAAAQREG------KTCAFIDAEHALDPIYAR---------------- 106 GKT +Q+ + Q G + +ID E + A+ Sbjct: 128 PGIGKTQACMQLCVSVQMPGAFGGYEGSAVYIDTEGSFMAERAKEVAQATVSHLVSISQF 187 Query: 107 ------------KLGVD--IDNLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAA 149 + V+ +D + + + L + ++L R+ V ++V+DS+A Sbjct: 188 LPKHLSESGALSQFTVNEILDRVHLFRCHEITELLAVVESLPMYVRAHGVKLVVIDSMAF 247 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG-VMFGNPE 208 + M L ++++ +L K + ++ +NQI +K Sbjct: 248 HFRQDF-------KDMALRTAILAKMTTQLLNLAKSEHLAVVSVNQITVKPDPASGVARL 300 Query: 209 TTTGGNALKFYASVRLDI-----RRIGAVKEGENVVGSETRVKVVKNKI 252 G + + R+ + RR+ + + + + + V I Sbjct: 301 VPALGESYAHGCTTRVILSWESDRRMAYLFKSPRLPRGKAKFTVTNGGI 349 >UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickettsiales RepID=RADA_RICBR Length = 448 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 10/206 (4%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 I K K +L + + V IST LD LG GGL +G + I G GK+T Sbjct: 42 KNIAKIGSKQDFEQLSSNVTDQVR-ISTPIGELDRVLG-GGLVLGSAILIGGDPGIGKST 99 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 135 L LQ++A + C +I E +LD I R L +D+ N + I A Sbjct: 100 LLLQLVAGSFASKVKCLYITGEESLDQIKLRALRLDLVNDKTNILAANNLEDIIASLEAN 159 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 G +D++V+DS+ + + S + A +L KQ+N +++ Sbjct: 160 KGNIDLVVIDSIQTIATRELTSPPGTVSQIRTCA-------HELVNYAKQNNIIILLSCH 212 Query: 196 IRMKIGVMFGNPETTTGGNALKFYAS 221 + K G + G + + ++ Sbjct: 213 V-TKDGQLAGPKLLEHLVDTVLYFEG 237 >UniRef50_UPI0000586FDE PREDICTED: similar to RAD51L2/RAD51C protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000586FDE Length = 425 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 93/270 (34%), Gaps = 49/270 (18%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---- 88 + + I T LD LG GG+PM +I EI G GKT +Q+ Q Sbjct: 115 QKEQSLPPIITFCEELDEMLG-GGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGG 173 Query: 89 --KTCAFIDAEHALDPIYA-----------RKLGVD-------IDNLL----CSQPDTGE 124 +ID E + P A +G + +L + Sbjct: 174 VEGEAVYIDTEGSFIPQRAWGIAQAATEHCHTMGDQAELKDFTTEKILSGIHYFRCHNHV 233 Query: 125 QALEIC----DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 + L + + L+++ V +I+VDS+A M L R+++ + Sbjct: 234 ELLALVNLLPEFLSKNPKVKLIIVDSIAFHFRHDF-------DDMSLRTRLLNGLAQNFI 286 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI-----RRIGAVKEG 235 Q N ++ NQ+ KIG + G + ++R+ + +R + + Sbjct: 287 RIATQYNLAVVLTNQMTTKIGEGTSH-LIPALGESWGHACTIRVILYWKQAQRYANLYKS 345 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILY 265 + + ++ ++ P A + Sbjct: 346 PSKQEATVPYQIT---VSDPQSHASMLLKL 372 >UniRef50_B0XK02 RAD51D n=2 Tax=Culicini RepID=B0XK02_CULQU Length = 323 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 95/265 (35%), Gaps = 34/265 (12%) Query: 13 AALGQIEKQF---GKGSIMRLGEDRS---MDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 L I++ F G+ +R+GE ++ I TG LD L G LP G ++E++ Sbjct: 50 EVLSAIKRDFMTRCSGTTVRVGEYFQYLGELIDPIPTGVRGLDALLQGGLLP-GHVLEVF 108 Query: 67 GPESSGKTTLTLQVIAAAQREGKT----CAFIDAEHALDPIYARKLGV-----------D 111 G + GK+ L + + A G ++D + + + + Sbjct: 109 GEPACGKSQLCMTIAANVASRGAADPVDVFYVDTKCDFSASRVQSMLLAGKCSEEEAREA 168 Query: 112 IDNLLCSQPDTGEQALEICDALARS-------GAVDVIVVDSVAALTPKAEIEGEIGDSH 164 + + + + E L + + G V++VDS+ AL + S Sbjct: 169 MQRIKVERIHSPEHLLGTVEEMLAQIDQEERFGKFRVLLVDSLPALWYAHQ-----NSSS 223 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 224 M++ L ++ ++ +N + G + + RL Sbjct: 224 SCYPVGMLTSLAGLLRKLASENMIAVVVVNLRIVSTDSGQQRVTQPALGRYWEMVPTTRL 283 Query: 225 DIRRIGAVKEGENVVGSETRVKVVK 249 + ++ + G+N + S ++ +K Sbjct: 284 LMSKLDSGDNGQNRLISISKCNYLK 308 >UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID=Q04QR6_LEPBJ Length = 459 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 100/265 (37%), Gaps = 31/265 (11%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 + L +E + TG LD+ LG GGL G + I G GK+TL L+V + Sbjct: 60 IPLDRVEEESLERMGTGLKELDLVLG-GGLVPGSLTLIGGEPGVGKSTLVLEVSRYLTQA 118 Query: 88 GKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 K +I E + I A ++G NLL T E E A+ + VD Sbjct: 119 NKKVLYISGEESPSQIRMRAERMGFRSSNLLL----TSETYAENISAMIEGARPTAVFVD 174 Query: 146 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205 S+ + + + + + + L K+S ++ I K G + G Sbjct: 175 SIQTIARE-------ALPNQAGTVTQLRECTQILLETAKRSGIPILMTGHI-TKEGTIAG 226 Query: 206 NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILY 265 + + ++ RL+ R+ ++ VKN+ A A F++ + Sbjct: 227 PKILEHLVDTVLYFEGDRLNYYRL---------------LRAVKNRFGAVGDLAIFEM-F 270 Query: 266 GEGINFYGELVDLGVKEKLIEKAGA 290 G+ G+ + V E++G+ Sbjct: 271 SGGLREVGDRNSIFVSAGAEERSGS 295 >UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34D2F Length = 485 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 22/224 (9%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 S + LG + D TG L+ LG GG+ G +V + G GK+TL LQV Sbjct: 93 SEIELGREERTD-----TGFGELNRVLG-GGIVKGSLVLVGGDPGIGKSTLLLQVCRNLA 146 Query: 86 REGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 G+ +I E +L I A ++G D+L E LE+ + R A D ++ Sbjct: 147 AGGQKVLYISGEESLKQIKIRASRIGEMSDSL----CFLCETNLEMIQEVVRRTAPDTVI 202 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DS+ + + S + + L K + + + K GV+ Sbjct: 203 IDSIQTMYLEEITSAPGSVSQV-------RECTNVLMQIAKGLGITVFIVGHV-TKEGVV 254 Query: 204 FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 G + + ++ R RI ++ +N GS + V Sbjct: 255 AGPRVLEHMVDTVLYFEGDRHASYRI--LRGVKNRFGSTNEIGV 296 >UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL59_9BACT Length = 445 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 21/237 (8%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + AA I K+ K + L + + ++ E TG LD LG GGL G ++ + G Sbjct: 39 VDAATTAIGKRIAKAKPVSLKDVKGLETERTPTGMPELDQVLG-GGLVKGSVLLVGGEPG 97 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALE 128 GK+T+ LQ R+ ++ E + + R +LGV + + ++ E L+ Sbjct: 98 IGKSTIMLQCAGILSRDRLKVLYVSGEESAAQLRLRSDRLGVSENEIDILSTNSLEDVLQ 157 Query: 129 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 188 C+ D I++DS+ + + +G + +L K Sbjct: 158 ACEE----EKPDYIILDSIQTIASD---DLNSAAGTVG----QVKHVTYRLVELAKSRGI 206 Query: 189 LLIFINQIRMKIGVMFGNPETTTGGNALKFYA-----SVRLDIRRIGAVKEGENVVG 240 ++ + Q+ K G + G + + ++ VR+ +R + N VG Sbjct: 207 TVMIVGQV-TKDGYIAGPKVLEHLVDTVLYFEGDYSRGVRI-LRSVKNRFGPTNEVG 261 >UniRef50_A0NCA9 AGAP003791-PA n=1 Tax=Anopheles gambiae RepID=A0NCA9_ANOGA Length = 290 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 59/300 (19%) Query: 22 FGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 81 F K ++ E+ + + T LD+ALG+G +P G I E+ GP SGKT L LQ+ Sbjct: 2 FKKSALDWWREEEART--GLVTFCRDLDLALGSG-IPEGMITELCGPPGSGKTQLCLQLA 58 Query: 82 AAAQRE------GKTCAFIDAEHALDPIYARKL------------------------GVD 111 Q ++D + P +++ G Sbjct: 59 VNVQIPQQLGGLQGRAVYLDTNYGFFPQRVQEMAKACHNHCANIALLHKLNPEETLAGFS 118 Query: 112 ----IDNLLCSQPDTGEQALEIC----DALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 163 +DN+L S Q LE + L + +IV+DS++ L Sbjct: 119 EATALDNILYSHVTNCTQILEAIAVLQNRLYDGEKIKLIVLDSLSFLIRNTNTRS----- 173 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG--------NPETTTGGNA 215 + + + + L + ++I N + +I + G G + Sbjct: 174 --MKRVKRVHEILTLLHKLAHRFGCVVIVTNDVTTRISDVDGGGGERPDVPQIVPALGGS 231 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG--EGINFYG 273 L + R+ + R + + ++ + K P F+I G+ G Sbjct: 232 LTHKVNQRIFLGRDESHFDAQSQAPPSYVASIEKG-HFLPSVTVAFRIEPAGIRGVKREG 290 >UniRef50_UPI00019A9ED6 RAD51 homolog C n=1 Tax=Nasonia vitripennis RepID=UPI00019A9ED6 Length = 314 Score = 94.8 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 109/301 (36%), Gaps = 48/301 (15%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDV-ETISTGSLSLDIALGAGGLPMGR 61 ++ + K + IEKQ + L + E IS L+ ALG GG+ Sbjct: 32 LNSKQLKNFNLSRSDIEKQLQPSQELGLDIWQRETQQEHISLCCSELEAALG-GGIQCRV 90 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYA---------- 105 I E+ G SGKT + +Q+ + Q +ID Sbjct: 91 ITELSGVPFSGKTQICMQLCISVQLNKCYGGLDGRAIYIDTRSGTCASRFKDIVRGLNKS 150 Query: 106 -RKLGVDIDNLL----CSQPDTGEQALEICDALARSG-------AVDVIVVDSVAALTPK 153 + L ++ D +L P++ E+ ++I D+L V +I+VDS+ ++ Sbjct: 151 HKDLNLNADEVLKCIEILSPNSVEEFVQIIDSLKFKMKSNKDEKKVRLIIVDSL-SMPIL 209 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 213 I+ + S + KL + ++ N++ M++ + GG Sbjct: 210 CCIDDPTKRPYYY------SHILHKLHKLALINELAVVITNELVMQVDKDGKSYFAAAGG 263 Query: 214 NALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 273 + YASV+L++ R + + ++K+ I F I GI + Sbjct: 264 QYVADYASVKLEMTR---------LTDHKFATCLLKSPIMPEIS-VTFMITED-GIRNFS 312 Query: 274 E 274 Sbjct: 313 C 313 >UniRef50_Q97B99 DNA repair and recombination protein radB n=3 Tax=Thermoplasma RepID=RADB_THEVO Length = 234 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 23/238 (9%) Query: 35 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 94 +E + G +D L GGL G I EI+G SGK+ + + +A R GK FI Sbjct: 8 QEKIEKLPLGVACIDG-LTNGGLEAGIITEIFGEGGSGKSNVCMLAACSALRLGKKVVFI 66 Query: 95 DAEHALDPIYARKLGVDIDNLLCSQPDTGEQA----LEICDALARSGAVDVIVVDSVAAL 150 D+E + D L + + + + + + + + ++DS + Sbjct: 67 DSEGFSSERFLSICKADNSKLKVIRVFSLDDQEVAITKFSKIIEKDASYGLFILDSFSEF 126 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 + E G+ + + + L+ + ++ NQI I Sbjct: 127 F-RLERTGDNQSRVID-----FQRQLSLLSSIAAKRKIPVLITNQIYQDIANG---DILP 177 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEG 268 GG + + A+ E + ++ V+K++ EF+I+ Sbjct: 178 FGGYVVDHI---------MKAIYRLERLPDGRRKMTVMKHRSVKEGNSVEFRIVQDGI 226 >UniRef50_C0AXS3 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AXS3_9ENTR Length = 93 Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 54/93 (58%), Positives = 70/93 (75%), Gaps = 5/93 (5%) Query: 264 LYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKK 323 +YGEGIN +GEL+DLGVK KL+EKAGAWYSY GEKIGQGKANAT +LK++PE E+ K Sbjct: 1 MYGEGINTFGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATTYLKEHPEMYNELNTK 60 Query: 324 VRELLLSNP---NSTPDFS--VDDSEGVAETNE 351 +RE+LL++ S DF+ DD+ + ET + Sbjct: 61 LREMLLNHAGEFTSAADFANDSDDAADIEETEK 93 >UniRef50_B5LBC4 RAD51D transcript variant delta 10 n=14 Tax=Euteleostomi RepID=B5LBC4_MOUSE Length = 307 Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 88/244 (36%), Gaps = 36/244 (14%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-G 88 L E+ +STG SLD L GL G + EI G SGKT + L V A Sbjct: 71 LYEELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCVAANVAHSLQ 129 Query: 89 KTCAFIDAEHALDPIYARKL-----------GVDIDNLLCSQPDTGEQALEICDAL---- 133 + ++D+ + +L + + + + L++ L Sbjct: 130 QNVLYVDSNGGMTASRLLQLLQARTQDEEKQASALQRIQVVRSFDIFRMLDMLQDLRGTI 189 Query: 134 -----ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 188 SGAV V++VDSV A+ +G A +M Q R+L + Sbjct: 190 AQQEATSSGAVKVVIVDSVTAVVAPL-----LGGQQREGLA-LMMQLARELKILARDLGV 243 Query: 189 LLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR-VKV 247 ++ N + G G + F S R+ + V EG +GS R V + Sbjct: 244 AVVVTNHLTRDWD---GRRFKPALGRSWSFVPSTRILLD----VTEGAGTLGSSQRTVCL 296 Query: 248 VKNK 251 K+ Sbjct: 297 TKSP 300 >UniRef50_UPI00005234FA PREDICTED: similar to RAD51-like 3 (S. cerevisiae) n=1 Tax=Ciona intestinalis RepID=UPI00005234FA Length = 328 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 69/209 (33%), Gaps = 27/209 (12%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEH 98 + TG SLD L G+ G + EI GP SSGKT L + +ID Sbjct: 81 VLPTGCESLDDLL-DAGIYTGEVTEIVGPSSSGKTQLCETFAVNVAASFDQNVIYIDTAG 139 Query: 99 ALDPIYARKL----------GVDIDNLLCSQPDTGEQALEICDALARSG---------AV 139 + ++ + + S+ + E D + R ++ Sbjct: 140 GFSAVRVGEIFKKRFSSHNTSATLSRIRVSRCFEVSELRETLDLVRRKMSAQDETFFSSL 199 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 V+++DSV +L G + L + R+L K ++ N + Sbjct: 200 KVVIIDSVTSLLSTVLYNGTFVEGMASLQS-----IGRQLNALAKDFALAVVITNDMVTG 254 Query: 200 IGVMFG-NPETTTGGNALKFYASVRLDIR 227 G G F SVR+ ++ Sbjct: 255 PQDKTGQFSRKPALGRVWTFVPSVRVQLQ 283 >UniRef50_Q6L2I8 DNA repair and recombination protein RadB n=1 Tax=Picrophilus torridus RepID=Q6L2I8_PICTO Length = 228 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 89/238 (37%), Gaps = 28/238 (11%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E + + +D + GGL G I EIYG SGKT +++ + GK +ID E Sbjct: 11 EKLPSNVKCIDELMN-GGLEPGIITEIYGQGGSGKTNISMIFARSVLLSGKRVIYIDTEG 69 Query: 99 ALDPIYARKLGVDID---NLLCSQPDTGEQ---ALEICDALARSGAVDVIVVDSVAALTP 152 ++ D N++ + + + A+ + L + ++++DS+ + Sbjct: 70 -FSTERFSQICPDKSLYKNMVLFRASSIDDQDLAIIRSEKLMKEKNYSLLILDSLTSFF- 127 Query: 153 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG 212 + E +I G + + L + N ++ NQI I P G Sbjct: 128 RIEKGNDISSRMSG-----FEKELGMLNNIAVRYNIPVLLTNQIYEDIDKKSLEPF---G 179 Query: 213 GNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 G + + +I ++ R+++VK++ F I GI+ Sbjct: 180 GFFIDHSMKAIYKLEKIN----------NKRRIEIVKHRSIKEGLYTTFIIN-DSGIS 226 >UniRef50_UPI0001793527 PREDICTED: similar to X-ray repair complementing defective repair in Chinese hamster cells 3 n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793527 Length = 321 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 37/228 (16%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ----REG 88 + + ++TG +D LG G G I EI G GKT LQ+ Q +G Sbjct: 71 HQEPNNHILTTGCKQIDKLLGGGLFKYG-ITEISGESGCGKTQFCLQIALTVQLPLSLKG 129 Query: 89 KT--CAFIDAEHALDPIYARKL------------GVDI---------DNLLCSQPDTGEQ 125 A+I E +++ +D+ DN+L S T E Sbjct: 130 AKSGAAYICTEDRFPSSRIQQMISNIRFKYQCDSKIDMNELCQTDYGDNILISHIATVED 189 Query: 126 ALEICDALAR----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 + + + +IV+DS+ A+ GE S + +R + L Sbjct: 190 LKKCIHEMLPRVLLHRPIKLIVIDSITAV-----FRGEYTPSEVPRRSRDLRDIAVFLHK 244 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 229 + +I +NQ+ I + GN + G A + RL + + Sbjct: 245 LSVEHGLWIICVNQVTSSISDIGGNKLVPSLGLAWANLVTTRLMMSKT 292 >UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD3_ELUMP Length = 454 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 16/198 (8%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 I+ L + +++ E TG LD LG GG+ G+++ + G GK+TL LQ A+ Sbjct: 56 EIINLSDTKTLREERELTGISELDRLLG-GGIVKGQLILLAGAPGIGKSTLMLQTAASLS 114 Query: 86 REGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 + GK +I E +L+ A +LGV+ N+ + +E D + +V++ Sbjct: 115 K-GKKVLYISGEESLNQISSRALRLGVEGKNIFLLSETNMQNIIEALDKV----KPEVLI 169 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DS+ + + A + + K T+L + + K G + Sbjct: 170 IDSIQTVYHPEFSSSPGTIGQVRECAAELLR-------LCKPKGTVLFILGHV-TKDGEL 221 Query: 204 FGNPETTTGGNALKFYAS 221 G + + ++ + Sbjct: 222 AGPKVLEHMVDTVLYFDT 239 >UniRef50_A0RYZ3 RecA/RadA recombinase related protein n=1 Tax=Cenarchaeum symbiosum RepID=A0RYZ3_CENSY Length = 218 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 25/225 (11%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99 I +G +D LG GL G I +I+GP +SGK+ + ++ A A EG F D Sbjct: 1 MIRSGIRGIDGFLGG-GLRGGFITDIFGPPASGKSQIAFEICAGALAEGGRVIFHDTSGT 59 Query: 100 LDPIYA------RKLGVD--IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 151 L P R LG + +D ++ S+ + + + ++VVD+ L Sbjct: 60 LRPERILQILRSRGLGGEGLLDRMIVSRMTNTGEQAAGLSQIGPEAS--LVVVDNATELF 117 Query: 152 PKAEIEGEIGDSHMGL-AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 E L R++ Q MR+L+G +I N +R G G E Sbjct: 118 S-----FEYAGRERSLPRNRLLMQYMRRLSGAAVALRVPVIVTNTVRFIEG---GEAENL 169 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSE---TRVKVVKNKI 252 +A++ + VR+ +RR+G V E + K+ I Sbjct: 170 A--SAMRPFPHVRIHLRRMGGVTAAEISTAGKRSYFSFKITPGGI 212 >UniRef50_Q4RWF9 Chromosome undetermined SCAF14988, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodon nigroviridis RepID=Q4RWF9_TETNG Length = 329 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 55/252 (21%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCA 92 TI T S LD ALG GG P+GR+ E+ G GKT L LQ+ Q G Sbjct: 81 RTIVTFSSQLDAALG-GGAPVGRMTEVCGVPGVGKTQLCLQLAVDVQVPHCFGGLGAQVV 139 Query: 93 FIDAEHALDPIYA------------------------RKLGVD--IDNLLCSQPDTGEQA 126 ++D E V+ + N+ + + Sbjct: 140 YVDTEGGFRLQRLLDLAAAAVNHCSLLAEDQEQRVAMETFTVETILSNVFVVRCHDYLEL 199 Query: 127 LEICD----ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 L L+ V ++VVDSVA+ E + R++S ++L Sbjct: 200 LAELHLMPGFLSAHPGVRLLVVDSVASPFRPLLDE-------LSQRTRLLSGLAQQLVAM 252 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 + ++ NQ+ ++ + G+ A++RL + G Sbjct: 253 AASRDMAVVVTNQMTTRV-WGTHSEVVPALGDTWGHAAAIRLRL----------QWEGPR 301 Query: 243 TRVKVVKNKIAA 254 +VK+ Sbjct: 302 RLATIVKSPCHR 313 >UniRef50_C9SL37 DNA repair protein RAD57 n=4 Tax=Sordariomyceta RepID=C9SL37_VERA1 Length = 459 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 32/197 (16%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFI 94 IST LD ALG GG+P G + EI G GKT L ++ A Q G+ +I Sbjct: 93 VISTLDDDLDRALG-GGIPTGYVTEIAGESGVGKTQFLLSLMLAVQLPSPHGLGRRALYI 151 Query: 95 DAEHALDPIYARKL--------GVD------IDNLL---CSQPDTGEQALEICDAL-ARS 136 E L R++ G+ D ++ + ++ E L + Sbjct: 152 STEAPLSTTRLRQILASNPLLSGLSEEERPTTDAIIVGSVADLESQEHILRFQVPVEVER 211 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSH---MGLAARMMSQAMRKLAGNLKQSNTLLIFI 193 + ++V+DSVAA +AE E + +H MG + + + L ++ N ++ Sbjct: 212 SNIGLLVLDSVAANY-RAEFERGVTKNHGSNMGARSNELIRLGALLRDLAQKYNLAVVVA 270 Query: 194 NQIRMKIGVMFGNPETT 210 NQ+ G F +P Sbjct: 271 NQV----GDRFSSPLVP 283 >UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=B1YGS3_EXIS2 Length = 461 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 77/219 (35%), Gaps = 19/219 (8%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 RL S + + TGS D LG G +P G +V + G GK+T+ LQ A G Sbjct: 64 RLSNILSQEESRVFTGSGEFDRVLGGGIVP-GSMVLVGGDPGIGKSTILLQTSARLAARG 122 Query: 89 KTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 + +I E +L A +LG+ +L E + + + + +++DS Sbjct: 123 EKVLYISGEESLKQTKLRAERLGLPTQDLFVL----SETDMNMIERVVDEENPAFLIIDS 178 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + + + M L K + + + K G + G Sbjct: 179 IQTVYIDEIQSAPGSVTQVRECTAM-------LMKIAKSRGIAIFIVGHV-TKQGSIAGP 230 Query: 207 PETTTGGNALKFYASVRLD----IRRIGAVKEGENVVGS 241 +A+ ++ R +R + N +G Sbjct: 231 RLLEHMVDAVLYFEGERHHTFRILRAVKNRFGSTNEIGI 269 >UniRef50_B5LW25 RAD51D protein n=4 Tax=BEP clade RepID=B5LW25_WHEAT Length = 246 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 39/230 (16%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA-AQR 86 M+L +D + + TG +D LG GGL G++ EI G SSGKT + L A A R Sbjct: 1 MQLLKDAAEGKHFLPTGLEGIDTLLG-GGLRKGQLTEITGQSSSGKTQVCLYSAAHVAAR 59 Query: 87 EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP--------------DTGEQALEICDA 132 ++D ++ P + ++ L +P ++ + + Sbjct: 60 HMGAVLYLDTSNSFSPSRIAHILDELPISLIKEPKDMRLKRVMSSIICESVFDIFALFEV 119 Query: 133 LAR------------SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 L R S + ++++DSV++L M ++ M+ L Sbjct: 120 LDRLEVSLNCKVTNGSNKICLLIIDSVSSLLAPIIGGKNSQGRSMMISVAMI------LK 173 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 230 + N ++ N + G G + K +RL I R Sbjct: 174 KLAHKHNLSVLVTNHMVAGNGAP-----KPALGESWKAAPHIRLMISRDR 218 >UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE34_9FIRM Length = 456 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 15/197 (7%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 L E + V I TG D LG G +P G ++ + G GK+T+TL V A G Sbjct: 61 TLREVDKVKVNRIPTGITEFDRVLGGGIVP-GSLILLGGAPGIGKSTITLDVSMKAANRG 119 Query: 89 KTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 ++ E + A +LG D L + T + I AR A ++V+DS Sbjct: 120 IPVLYVSGEESEAQTAMRAERLGTASDAL---KVMTATELGTILVE-ARKDAPKLLVIDS 175 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + +E+E G + + KL K+SN +I I + K G + G Sbjct: 176 IQTMY-NSELETAAGSVG------QVRECTAKLLNFAKESNIAIIIIGHV-TKEGNIAGP 227 Query: 207 PETTTGGNALKFYASVR 223 + + + R Sbjct: 228 RLLEHMVDVVLQFEGDR 244 >UniRef50_B6UY07 Spindle A (Fragment) n=6 Tax=melanogaster subgroup RepID=B6UY07_DROME Length = 211 Score = 91.7 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 15/118 (12%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----- 87 DV +STGS LD LG GG+ G I EI+G GKT L + Q Sbjct: 91 QMRADVVQLSTGSKELDKLLG-GGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKG 149 Query: 88 -GKTCAFIDAEHALDPIY----ARKLGVD----IDNLLCSQPDTGEQALEICDALARS 136 C +ID E+ P A++ ++ +DN+ ++ +Q ++ A Sbjct: 150 GEGKCMYIDTENTFRPERLXXIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGM 207 >UniRef50_B6HD82 Pc20g01450 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HD82_PENCW Length = 390 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 26/213 (12%) Query: 41 ISTGSLSLDIALGA-------GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 93 I+TG LD L GG+ G + EI+GP +GKT+L L + A R+GK + Sbjct: 39 IATGLARLDEVLNDLPDQPDQGGILRGHVTEIFGPPGAGKTSLALNIACNALRDGK-VVW 97 Query: 94 IDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV---DVIVVDSVAAL 150 ID L ++ +++D+ + + T + + + ++VVDSV+ L Sbjct: 98 IDTGCPLPTPRLEEMSINLDDFIYFRAHTLAHLIALLARPPKGFPPSGTSLLVVDSVSNL 157 Query: 151 TPKA-----EIEGEIGDSHMGLAARM---------MSQAMRKLAGNLKQSNTLLIFINQI 196 E++ ++ + + A + ++ + + N ++ INQ Sbjct: 158 FSAYFPSAQELKDQLAEGKITDKAHLQWLINRRWNIASELGTHLARVAARNIAVVAINQS 217 Query: 197 RMKIGVMFGNPETT-TGGNALKFYASVRLDIRR 228 K+ G A + R+ + R Sbjct: 218 HTKVKGQSHAVLQPLLSGGAWEASVQTRIAVYR 250 >UniRef50_UPI0000E48A98 PREDICTED: hypothetical protein n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A98 Length = 355 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 93/263 (35%), Gaps = 37/263 (14%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REG 88 ++ + ++TG LD L G L G I EI G ++GKT L LQ+ AQ ++G Sbjct: 72 QEDRKEPTHLTTGCPILDEFLHGGILVKG-ITEIAGQSAAGKTQLCLQLCLTAQLPVQQG 130 Query: 89 KT---CAFIDAEHALD----------------PIYARKLGVDIDNLLCSQPDTGEQALEI 129 +I E P A++L V D++ +Q Sbjct: 131 GLSNGVVYICTEDVFPSKRLQQLISSFNSKIGPALAKQLAV-GDHIYVEHAAEKDQLWHC 189 Query: 130 CDA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 + L G V + VVDS+AA+ E AR + + L Q Sbjct: 190 LEKRLPLLLSRGMVKLAVVDSLAAI-----FRSEFELRDTIRRARELQRVGAHLHRLSSQ 244 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA---SVRLDIRRIGAVKEGENVVGSE 242 N ++ +NQ+ + E+ ++ VRL + R + + Sbjct: 245 FNVAVVCVNQVTANMKASLDPTESEMMPALGLTWSNIVKVRLMLSRTPYRLPPSDTTNNR 304 Query: 243 TRVKVVKNKIAAP-FKQAEFQIL 264 T V + + ++AE + Sbjct: 305 TDRGSVNGECSHESEQKAEIPVR 327 >UniRef50_UPI0000F2B25B PREDICTED: similar to RAD51-like 1 (S. cerevisiae), n=1 Tax=Monodelphis domestica RepID=UPI0000F2B25B Length = 396 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 87/231 (37%), Gaps = 30/231 (12%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 M+L + ++T +SLD AL GG+ G + EI GP GKT + + A Sbjct: 69 EMKLEKSGGPSSAFLATTLISLDEAL-HGGVACGSLTEITGPSGCGKTQFCMMMSVLATL 127 Query: 87 E------GKTCAFIDAEHALDPIYA----------------RKLGVDIDNLLCSQPDTGE 124 +ID E A + L + L + E Sbjct: 128 PTGMGGLEGAVIYIDTESAFSAERLIRIAEFRFPSFFNTEEKLLSMSSKIHLYKELTCNE 187 Query: 125 --QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 + +E + S V ++++DSVA++ + E + ++ +M + +++ L Sbjct: 188 VLKRIESLEEEIISNRVKLLIIDSVASVV-RKEFDTQL-QGNMRERSNFLAREASLLKYL 245 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF--YASVRLDIRRIGA 231 ++ + ++I N+ + + GG L + + +++D + Sbjct: 246 AEEFSIIVIVTNK-YSQAYNQHAFQDKAFGGRPLAYTPFEHLQIDFITMSK 295 >UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain protein n=1 Tax=uncultured marine microorganism HF4000_APKG7H23 RepID=B3T9S3_9ZZZZ Length = 459 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 81/216 (37%), Gaps = 23/216 (10%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 +L E + D +S G +D LG G +P G ++ I G GK+TL LQ+ + G Sbjct: 62 KLREYEASDQPRVSVGLAEVDRLLGGGAVP-GSLLLIAGEPGIGKSTLLLQMASHLAGTG 120 Query: 89 KTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 +I E + + A++LGV + GE+ L +AL A +VDS Sbjct: 121 APVLYISGEESAAQVRLRAQRLGVSSAEVHFLAETNGERILNELEALRPEMA----MVDS 176 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + L+ + + +M+ + K+ + + K G + G Sbjct: 177 IQTLSSDGVPSAAGSVAQVRECTQMLLR-------WAKERGCPIFLAGHV-TKDGAIAGP 228 Query: 207 PETTTG--------GNALKFYASVRLDIRRIGAVKE 234 G +L Y +R R GA + Sbjct: 229 RVLEHMVDVVISLEGESLSSYRLLRCTKNRFGATND 264 >UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BB82_SANKS Length = 473 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 12/224 (5%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 90 GE + TG D LG G +P G +V + G GK+TL L V + R G+ Sbjct: 71 GEIDVDSAQAAPTGISEFDRVLGGGIVP-GAVVLLAGEPGVGKSTLLLDVASTTARAGRR 129 Query: 91 CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 +I E + + R +D + E L + D+++VDSV + Sbjct: 130 VLYITGEESAGQVRLRAERIDAL--APTLLLAAETDLGQVLGQIEATDPDLLIVDSVQTV 187 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 A+++G G R ++ A L K N ++ + + K G + G Sbjct: 188 AS-AQVDGSPGGV---GQVREVASA---LIAAAKGRNMPVVLVGHV-TKDGAVAGPRTLE 239 Query: 211 TGGNALKFYASVRL-DIRRIGAVKEGENVVGSETRVKVVKNKIA 253 + + + R +R + AVK ++ ++ IA Sbjct: 240 HLVDVVLQFEGDRHSRLRMVRAVKNRYGPTDEVGCFELTEDGIA 283 >UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga lettingae TMO RepID=A8F5C2_THELT Length = 441 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 96/237 (40%), Gaps = 32/237 (13%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 93 +S++ ++TG LD +L +G +P G+++ + G GK+TL L++ A + G + Sbjct: 54 KSVNSTRLTTGFTELDASLCSGIVP-GQVLLLGGEPGVGKSTLALEICAWFSKNGYKSLY 112 Query: 94 IDAEHALDPIYARKLGV---DIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 + AE ++D + R + ++D + + + L+I + +IVVDS+ + Sbjct: 113 VSAEESVDQLAIRARRLACENLDGITVCSDNDIDSVLQIIN-----EDYSLIVVDSLQTM 167 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 + + + A K+ K+ + I I I K G + G Sbjct: 168 YSEEVGTYPGSVVQVRVCA-------EKIISKCKELSIPSILIAHI-TKSGEISGPKLVE 219 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 267 + + ++ EGE ++V+KN+ + A F++ Sbjct: 220 HLVDTVIYF--------------EGEKTTELRI-LRVIKNRFGPSGEIAVFEMRDDG 261 >UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae RepID=D2RJM6_ACIFE Length = 457 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 15/197 (7%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 L + + V+ ++TG D LG G +P G ++ + G GK+T+TL V A G Sbjct: 60 TLKQVDRVKVQRMTTGIHEFDRVLGGGIVP-GSLILLGGAPGIGKSTITLDVSMKAAARG 118 Query: 89 KTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 ++ E + A +LG D L Q T + I AR ++V+DS Sbjct: 119 ARVLYVSGEESEAQTAMRAERLGQATDAL---QIMTATELGTILVQ-ARQVKPRLLVIDS 174 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + + E E +G + + KL K++ +I I + K G + G Sbjct: 175 IQTMYNQ---ELESAAGSVG----QVRECTAKLLTFAKETGIAIIIIGHV-TKEGNIAGP 226 Query: 207 PETTTGGNALKFYASVR 223 + + + R Sbjct: 227 RLLEHMVDVVLQFEGDR 243 >UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=B0K5E6_THEPX Length = 457 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 91/263 (34%), Gaps = 38/263 (14%) Query: 12 AAALGQIEKQFGKGS----IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 A+ K F K I L + + E I TG D LG GG+ G +V I G Sbjct: 35 EEAIES-SKNFRKTKDRSQIYLLEDVTFSEEERIRTGIEEFDRVLG-GGIVKGSLVLIGG 92 Query: 68 PESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT---GE 124 GK+TL LQV + ++ E ++ I R D +L + E Sbjct: 93 DPGIGKSTLLLQVAGNISDS-RKVLYVSGEESVQQIKLRA-----DRILKEKQRIYLLCE 146 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +E + D +++DS+ + + + + + Q +KL K Sbjct: 147 TNIEEIERKIDENKPDFVIIDSIQTIYTE-------ESETIPGSVSQIRQVTQKLMEIAK 199 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 Q + + I + K G + G + + ++ R RI Sbjct: 200 QKDISIFLIGHV-TKEGAIAGPKVLEHMVDTVLYFEGDRTQSFRI--------------- 243 Query: 245 VKVVKNKIAAPFKQAEFQILYGE 267 ++ VKN+ A + F + Sbjct: 244 LRAVKNRFGATHEIGVFDMEEDG 266 >UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickettsia RepID=RADA_RICFE Length = 446 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 9/182 (4%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99 I T L+ LG GGL +G + I G GK+TL LQ+ A+ C +I E + Sbjct: 65 RIPTPIGELNRVLG-GGLVLGSAILIGGDPGIGKSTLLLQLAASNFASKMNCLYITGEES 123 Query: 100 LDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 159 LD I R + +++ N I A +D++V+DS+ +T K Sbjct: 124 LDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEANKNNIDLVVIDSIQTITTKELSSPP 183 Query: 160 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 219 S + + A +L KQ+N +++ + K G + G + + ++ Sbjct: 184 GTVSQIRICA-------NELVNYAKQNNIIILLSCHV-TKDGQLAGPKILEHLVDTVLYF 235 Query: 220 AS 221 Sbjct: 236 EG 237 >UniRef50_C9JYJ0 Putative uncharacterized protein RAD51L1 n=1 Tax=Homo sapiens RepID=C9JYJ0_HUMAN Length = 425 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 58/283 (20%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 ++ +ST +LD AL GG+ G + EI GP GKT + + A Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLP 128 Query: 88 ------GKTCAFIDAEHALDPIYA---------------RKLGVDIDNLLCSQPDTGEQA 126 +ID E A KL + + + T ++ Sbjct: 129 TNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEV 188 Query: 127 LEICDALAR---SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 L+ ++L S + ++++DSVA++ + E + ++ ++ + +++ L Sbjct: 189 LQRIESLEEEIISKGIKLVILDSVASVV-RKEFDAQL-QGNLKERNKFLAREASSLKYLA 246 Query: 184 KQSNTLLIFINQIRMKI---------------------GVMFGNPETTTGGNALKFYASV 222 ++ + +I NQI + G + GN + Sbjct: 247 EEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNT 306 Query: 223 RLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILY 265 RL ++ + + ++ + K+ +A PF + I Sbjct: 307 RLILQYLDS---------ERRQILIAKSPLA-PFTSFVYTIKE 339 >UniRef50_O15315 DNA repair protein RAD51 homolog 2 n=30 Tax=Deuterostomia RepID=RA51B_HUMAN Length = 384 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 58/283 (20%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 ++ +ST +LD AL GG+ G + EI GP GKT + + A Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLP 128 Query: 88 ------GKTCAFIDAEHALDPIYA---------------RKLGVDIDNLLCSQPDTGEQA 126 +ID E A KL + + + T ++ Sbjct: 129 TNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEV 188 Query: 127 LEICDALAR---SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 L+ ++L S + ++++DSVA++ + E + ++ ++ + +++ L Sbjct: 189 LQRIESLEEEIISKGIKLVILDSVASVV-RKEFDAQL-QGNLKERNKFLAREASSLKYLA 246 Query: 184 KQSNTLLIFINQIRMKI---------------------GVMFGNPETTTGGNALKFYASV 222 ++ + +I NQI + G + GN + Sbjct: 247 EEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNT 306 Query: 223 RLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILY 265 RL ++ + + ++ + K+ +A PF + I Sbjct: 307 RLILQYLDS---------ERRQILIAKSPLA-PFTSFVYTIKE 339 >UniRef50_B7FT85 Rad51 DNA recombination/repair protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FT85_PHATR Length = 363 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 79/245 (32%), Gaps = 51/245 (20%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG- 88 L E+ I T +D LG GG+ MG + EI GP GKT +Q+ A+ Sbjct: 76 LLEENVEGQGCIITFCRHVDTLLG-GGIAMGELTEIAGPPGVGKTQWGMQLAVDARLPNT 134 Query: 89 -----KTCAFIDAEHALDPIYARKLGVDIDNLL-------------------CSQPDT-- 122 ++D E + P + + + PDT Sbjct: 135 FGGVAGETVYVDTEGSFSPERCHDMATSLVQHIEAGRRRRQEKGQKLQPMPAWFAPDTIL 194 Query: 123 -GEQALEICDALARS-----------------GAVDVIVVDSVAALTPKAEIEGEIGDSH 164 G + D A++ V ++VVDS+A A + Sbjct: 195 QGIHVYRVHDEAAQTSVLYSLPKFLQDRQEAGTPVRLVVVDSMAFHHRAAPPNSDFVGRT 254 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 224 R ++ L QS ++ INQ+ K+ + + G + + R+ Sbjct: 255 -----RSLTSQAAFLTNLAAQSGIAVVAINQMTTKMTTSEASKQVPALGESWAHAVTTRI 309 Query: 225 DIRRI 229 + R Sbjct: 310 LLSRP 314 >UniRef50_Q2USE9 Predicted protein n=9 Tax=Trichocomaceae RepID=Q2USE9_ASPOR Length = 375 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 95/265 (35%), Gaps = 54/265 (20%) Query: 35 SMDVETISTGSLSLDIAL---------------GAGGLPMGRIVEIYGPESSGKTTLTLQ 79 + ISTG LD A+ + G+P G + E+YGP +GKT+L L Sbjct: 31 ASPSGAISTGIPQLDEAIRPPSAEDVLGRTRDINSNGIPCGHVTEVYGPPGAGKTSLALS 90 Query: 80 VIAAAQREGKTCAFIDAEHALDPIYARKL--------GVDI-----DNLLCSQPDTGEQA 126 V +A R G +ID L + + D+ NL+ + Sbjct: 91 VATSALRNGDKVIWIDTGSPLPKVRLASMLKKSPDATSSDLPEDPIKNLIYFHARSLPHL 150 Query: 127 LEICDALARS---GAVDVIVVDSVAALTPK-----AEIEGEIGDSHMGLAAR---MMSQA 175 L + + ++V+DSV+ L P +E + + S + + +M++ Sbjct: 151 LALLIRPPKGFPPEDAKLLVIDSVSGLFPSYFPNPSEFKSRLPQSGITDKMQIQWLMNRK 210 Query: 176 M-------RKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG----GNALKFYASVRL 224 +L ++ +NQ +I G P T G + VR+ Sbjct: 211 WNVTSDLGNQLVKLAATHGLAILLVNQTHTRI---RGQPRATLCPVLAGGTWENSVHVRI 267 Query: 225 DIRRIGAVKEGENVVGSETRVKVVK 249 I R ++ + G +V+K Sbjct: 268 AIFRDFLPEDEGDSKGVHF-AEVMK 291 >UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus RepID=B5YF80_DICT6 Length = 457 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 21/226 (9%) Query: 16 GQIEKQFGKGS--IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 73 G+++K+ K + RL + + + + TG D +G GG+ G + + G GK Sbjct: 41 GKVDKRVNKEELEVYRLDQILNYEPVRLKTGLTGFDYIIG-GGIVEGSVTLLAGEPGIGK 99 Query: 74 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ----PDTGEQALEI 129 +TL LQ+ + +E +I AE +L ++G+ + L E+ +E Sbjct: 100 STLLLQLAISLSKESSRVLYISAEESLS-----QVGLRLKRLTSKDRLDIDFVSERDIEN 154 Query: 130 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 189 +I+VDS+ + + + KL K++N Sbjct: 155 ILPELEKFNYSLIIVDSIQTIYSSEFPTSPGNVVQV-------RECTSKLVDFAKKNNVA 207 Query: 190 LIFINQIRMKIGVMFGNPETTTGGNALKFYASVR-LDIRRIGAVKE 234 +I + + K G + G + + + R D+R + VK Sbjct: 208 VILVGHV-TKEGDIAGPKILEHLVDVVLYLEGERYHDLRVLRVVKN 252 >UniRef50_B6Q8E5 DNA repair protein (Rad57), putative n=2 Tax=Trichocomaceae RepID=B6Q8E5_PENMQ Length = 571 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 31/217 (14%) Query: 25 GSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 84 GS + L TIST +LD LG GG+P G + EI G SGKT L ++ A Sbjct: 101 GSRLDLSRWS-----TISTLDPALDDLLG-GGIPTGYLTEITGESGSGKTQFLLNLLLVA 154 Query: 85 QRE-----GKTCAFIDAEHALDPIYARKLGV--------------DIDNLLCSQP---DT 122 Q G+ +I E +L ++ + + N+L +T Sbjct: 155 QLPSPHGLGRKAIYISTEASLSTPRLSQILLSHPYLSKLPAAERPSLANVLSITAIDLET 214 Query: 123 GEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 + L +A S V ++V+DS+AA + + + +++ L Sbjct: 215 QDHILNYQLPVAISRYNVGLVVIDSIAANYRAEHASNSM--QSLSARSGELAKLGHMLRN 272 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 218 + + ++ NQ+ + M P +F Sbjct: 273 LAAREDIAIVVANQVSDRFDGMVDTPAAVHQQQYGRF 309 >UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKY5_9FIRM Length = 466 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 89/236 (37%), Gaps = 17/236 (7%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 +++E ++++ ++ + Q GK L + D + + G LD LG GG+ Sbjct: 33 SLEEKIEESIPKSIRTLSFQSGKEP-TSLTDIEIKDTDRVKLGITELDRPLG-GGIVSDS 90 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQ 119 ++ G GK+TL LQ+ + + GKT + E + I A +L V+ + Sbjct: 91 VILWGGEPGIGKSTLILQICDSFTKMGKTVLYCSGEESDIQIKMRAERLSVNTEECFVFA 150 Query: 120 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179 E L D L D++++DS+ S + + L Sbjct: 151 ESNLETILAEVDKL----HPDMVIIDSIQTTYLP-------NSSSAMGSPTQIRDCTAIL 199 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVR-LDIRRIGAVKE 234 K+S +++ I + K G + G + + + R R + VK Sbjct: 200 VKMAKESGIIVMIIGHV-TKEGNIAGPRILEHMVDVVFYLEGDRNYQFRVLRTVKN 254 >UniRef50_C5U657 DNA repair and recombination protein RadB n=1 Tax=Methanocaldococcus infernus ME RepID=C5U657_9EURY Length = 207 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 13/171 (7%) Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD---IDNLLCS 118 I +IYG GKT + + + +EGK ++D E L R++ D I+NLL Sbjct: 15 ITQIYGFPGVGKTNVCIMNVVNYAKEGK-VIYVDTEGGLFIERIRQITDDDKVIENLLIY 73 Query: 119 QPDTGEQALEICD-ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 177 + ++ EI L + +IVVD++ +L + E+ + + +M L +M+ Q ++ Sbjct: 74 NVYSFKEQDEIIRGELPLLSNISLIVVDNIISLY-RLEVSSD-AEKNMSL-NKMLGQQLK 130 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 228 L K +I NQ R I TGG L++++ + + + Sbjct: 131 TLLKVAKIRKIPIIITNQARDTIEGF-----EATGGRILEYWSKCIVRLEK 176 >UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae RepID=A7HJZ5_FERNB Length = 465 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 19/220 (8%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFID 95 E I TG S+D L GGL G+++ + G GK+T+ LQ+ + R K +I Sbjct: 74 ERIKTGINSIDELLS-GGLIKGQVILLGGEPGVGKSTIALQICDSIARNSNNDKRIYYIS 132 Query: 96 AEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 153 E ++ + A++LG++ + LL + E +E +IVVDS+ L Sbjct: 133 GEESVGQVGLRAKRLGINNEKLLI----SSETQIEDILNEIDPNKAQLIVVDSIQTLCS- 187 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 213 +I+ +G + + K+ K+ I I + K G + G Sbjct: 188 VDIDSPVGGIV------QIKAVVEKVRIFSKKYGIPSILIAHV-TKEGTIAGPKLVEHVV 240 Query: 214 NALKFYASVR-LDIRRIGAVKEGENVVGSETRVKVVKNKI 252 + + ++ R D R + K G T ++ N + Sbjct: 241 DTVIYFEGERTTDYRILRVQKNRYGPSGEITVFQMTSNGL 280 >UniRef50_Q9SK02 DNA repair protein RAD51 homolog 2 n=7 Tax=Magnoliophyta RepID=RA51B_ARATH Length = 370 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 89/289 (30%), Gaps = 69/289 (23%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI------AAAQREGKTCAF 93 + T LD L GG+P G + E+ GP GK+ +++ A + Sbjct: 83 HLPTHLKGLDDTL-CGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIY 141 Query: 94 IDAEHALDPIYARKLGVDI---------------DNLLCSQPDTGEQALEICDALARS-- 136 ID E ++G++ +L +P + E L S Sbjct: 142 IDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSIL 201 Query: 137 -GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR-MMSQAMRKLAGNLKQSNTLLIFIN 194 V ++V+DS+ AL G++ G + + + L + S ++ N Sbjct: 202 QNQVKLLVIDSMTALLS--------GENKPGAQRQPQLGWHISFLKSLAEFSRIPIVVTN 253 Query: 195 QIRM--------------------KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 234 Q+R + + G ++RL + Sbjct: 254 QVRSQNRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKS---- 309 Query: 235 GENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEK 283 G +KV K+ ++ P F I L D G + K Sbjct: 310 -----GQRI-IKVAKSPMSPPLA-FPFHITSAG----ISLLSDNGTELK 347 >UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUE9_SYNWW Length = 451 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 77/198 (38%), Gaps = 15/198 (7%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 + + L + + D S+G D LG G +P G ++ + G GK+TL LQV Sbjct: 51 AAIPLNQLSAEDSPRFSSGLSEFDRVLGGGIVP-GSLILLGGDPGIGKSTLLLQVAGLIA 109 Query: 86 REGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 GK ++ E +L I A +LG++ D + EQ +++ D+I+ Sbjct: 110 AAGKRILYLSGEESLQQIRLRASRLGINNDTIFLL----NEQDIDLLHEYINDLDPDLII 165 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DS+ + S + + + Q K+ + + + + K G + Sbjct: 166 IDSIQTVYSSKLSSIPGSVSQLRESTAAVMQ-------IAKKMDKAVFLVGHV-TKDGSL 217 Query: 204 FGNPETTTGGNALKFYAS 221 G + + ++ Sbjct: 218 AGPKVLEHIVDVVVYFEG 235 >UniRef50_B6H3A8 Pc13g13180 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H3A8_PENCW Length = 523 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 29/230 (12%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 I I + TIST ++D LG GG+P G + E+ G SGKT Sbjct: 83 SSINSDATTRKIGSTKRASQWN--TISTLDPAMDALLG-GGIPTGYVTEVTGESGSGKTQ 139 Query: 76 LTLQVIAAAQRE-----GKTCAFIDAEHALDPIYARKL--------------GVDIDNLL 116 L + A Q + +I EH+L ++ + ++L Sbjct: 140 FLLSLCLAVQLPKPQGLQRRAIYISTEHSLSTPRLSQILECHPVLSTLPAEQTPSLQDIL 199 Query: 117 CSQPDTGEQALEICDA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 172 E I + + ++++DS+ + +AE E ++ + + Sbjct: 200 SINAMDLESQDHILNYHLPVAIERYDIGLVIIDSITSNY-RAEHESNSLQAN-AKRSSEL 257 Query: 173 SQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NPETTTGGNALKFYAS 221 ++ L + + ++ NQ+ + + G P + TG ++ S Sbjct: 258 AKLGHLLRNLAVKEDIAIVLANQVSDRFESLKGSEPASRTGFPSMSQTPS 307 >UniRef50_UPI0001B416BF DNA repair and recombination protein RadB n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI0001B416BF Length = 240 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 84/240 (35%), Gaps = 33/240 (13%) Query: 43 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 102 +G +D + GGL G I E YG +GK+ L + +A + G + +ID+E Sbjct: 19 SGYPCIDKLM-EGGLEPGIITEFYGEGGAGKSNLAMIYSISALKNGNSAIYIDSEG-FSV 76 Query: 103 IYARKL-GVDID---NLLCSQPDTGEQALEIC--------DALARSGAVDVIVVDSVAAL 150 R + D++ ++ + + + + + ++VVDS Sbjct: 77 ERFRSIANGDMELINHMNIYRVKSLDDQYLALIKSDKLIGEKRESKNSFGIMVVDSFTNF 136 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 + E + G + + L+G + ++ NQI + P Sbjct: 137 F-RMEAGKDASARMEGYE-----KQLNILSGIALKYKIPVVITNQIYEDVNNSTLEPF-- 188 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 GG + + A+ E G R+ V K++ F+I+ GI Sbjct: 189 -GGFFIDHA---------MKAIYRIEKFSGGMRRITVEKHRSIREGSYTGFRIV-DSGIE 237 >UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae RepID=B1L9V3_THESQ Length = 441 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 89/250 (35%), Gaps = 34/250 (13%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 + L + + +E +STG LD A GG+ G+++ + G GK+T+ LQ+ Sbjct: 46 FLNLEDAGEISLERLSTGFSELDRAF-RGGIVPGQVILLSGEPGIGKSTIALQIAERFAE 104 Query: 87 EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD----TGEQALEICDALARSGAVDVI 142 G ++ E + + R D LL + T E ++ + ++ V + Sbjct: 105 RG-LVVYVSGEESPQQLKLRA-----DRLLLKRKKDILLTLENDIDEIISSLQNKRVSFM 158 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 202 VVDS+ + S + K K+ ++ + + K G Sbjct: 159 VVDSIQTVFSSDLGSSPGSISQVK-------NVTMKTIDFAKRRGVPVLLVGHV-TKEGE 210 Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQ 262 + G + + ++ EG+ G +K+ KN+ + A F+ Sbjct: 211 IAGPKLVEHMVDTVAYF--------------EGDRRTGLRL-LKITKNRFGPSDEVAVFE 255 Query: 263 ILYGEGINFY 272 + + Sbjct: 256 LKENGFVQVE 265 >UniRef50_B7GAG1 Rad51 DNA recombination/repair protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAG1_PHATR Length = 456 Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 55/305 (18%), Positives = 101/305 (33%), Gaps = 77/305 (25%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 91 E+ + + TG LD AL GG+ +G I E+ GP GKT L +Q+ A R + C Sbjct: 151 EETFSRMRYLPTGLEPLDQAL-RGGVRVGTITELVGPAGVGKTQLAMQLCIMASRYAQGC 209 Query: 92 AFIDAEHALDPIYARKLGVD---------------------------------------- 111 ++D E L R++ + Sbjct: 210 VYVDTEKKLSVARLREIALQRSSRVPDTNTHGEFLYPSDTTLVESTVDISATSRNCFRSP 269 Query: 112 ---IDNLLCSQPDTGEQAL----EICDALARSG-----------AVDVIVVDSVAALTPK 153 +DN+ P ++ E+ D L V ++V+DS+AA + Sbjct: 270 QEVLDNVTVHSPSNIDELFGALSEVEDELFSRNHQSVGSSNAKFPVRLLVLDSIAAPARR 329 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG----NPET 209 G + A + + + L Q + +++ INQ+ I Sbjct: 330 DFGAGSAPE-----LASTVIKIAQTLKRLADQHHLVVVVINQVGSSILGTDAVIDQTGIR 384 Query: 210 TTGGNALKFYASVRL------DIRRIGAVKEGENVVGSET---RVKVVKNKIAAPFKQAE 260 G + S R+ D+ ++ + + ++ V+K+ + P K Sbjct: 385 PALGTSWHHCVSTRVLFEFEADLVSSSSLSNSDGPLRGRAPSRQLSVIKSNLTGPGKPIV 444 Query: 261 FQILY 265 F + Sbjct: 445 FDLTL 449 >UniRef50_Q93YY9 RAD51C protein n=2 Tax=Chlamydomonas reinhardtii RepID=Q93YY9_CHLRE Length = 352 Score = 87.9 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 88/273 (32%), Gaps = 61/273 (22%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTC 91 I + + LD LG GG+ G++ E G GKT L +Q+ Q Sbjct: 90 TPRIISMARDLDALLG-GGVAAGQVTEFCGVPGVGKTQLGMQLAVNVQIPRSLSGPEGQA 148 Query: 92 AFIDAEHALDPIYARKLGVDIDNLLCS------------------QPDTGE--------- 124 +ID E + + + S +P T E Sbjct: 149 VYIDTEGSFMAERCADIAEGAVRHVQSILEKKASMGQPELLHDGERPFTLENVMRGIYLF 208 Query: 125 ------QALEICDALAR----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 174 + L + + L R V +IV+DSV + M R+++ Sbjct: 209 RVHDHVEQLGLVNMLPRFLEQYSQVRLIVIDSVTFHFRQDF-------PDMAQRTRVVTG 261 Query: 175 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 234 ++L + N ++ +NQ+ K+ G+ G + AS R+ + Sbjct: 262 MAQQLISLAQTHNVAVVLMNQVTTKVLEGGGSKLVPALGESWGHAASTRVMLTWG----- 316 Query: 235 GENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 267 +E +++K+ P A F + Sbjct: 317 ----PDNERHAQMIKS-PHLPLGDAAFAVTADG 344 >UniRef50_D1H4V0 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H4V0_VITVI Length = 1093 Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 40/229 (17%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA-AQR 86 M L ED + + +STG +D+ L GGL +G + E+ GP S+GKT + L+V + A R Sbjct: 128 MELLEDAQQNKQVLSTGCEGIDMLL-HGGLCVGHLTELVGPSSAGKTQICLKVASGVATR 186 Query: 87 EGKTCAFIDAEHALDPIYARKLGVD------------------IDNLLCSQPDTGEQALE 128 FID ++ P+ ++ + +LC L+ Sbjct: 187 YMGGVVFIDTGNSFSPLRIAHF-INQIPDTIFKEVKQNILEKVMSQILCHSVFDIFAMLD 245 Query: 129 ICDALARS---------GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179 + L S V +++VDS+++L +G S A +M A L Sbjct: 246 VVHQLEYSLRSQVQTGADQVRLLIVDSISSLITP-----ILGGSGSHGRA-LMISAGFLL 299 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 228 + N ++ N + G + G + K VRL + R Sbjct: 300 KKLAHEHNLAVVVTNHMVGGEGGIL----KPALGESWKSIPHVRLLLSR 344 >UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID=Q1IZ25_DEIGD Length = 449 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 15/189 (7%) Query: 35 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 94 + + +G LD LG GGL G + I G GK+TL LQV R G+T ++ Sbjct: 69 RREEPRLPSGIPELDRVLG-GGLVAGSVTLIGGEPGIGKSTLLLQVADRLARNGQTVLYV 127 Query: 95 DAEHALDPIYARKLGVDI-DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 153 E +L+ I R +++ + ++ E AL + + +VDS+ +T + Sbjct: 128 AGEESLEQIRLRADRLNVTAEIQLTRDTRAEH----IAALMQEHRPALCIVDSIQTVTVE 183 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 213 AE G + + ++++A K++ T + + + K G + G Sbjct: 184 AEG-APGGVAQVREGTALLTRA-------AKETGTATVLVGHV-TKEGTVAGPKVMEHIV 234 Query: 214 NALKFYASV 222 + F +V Sbjct: 235 DTTVFLETV 243 >UniRef50_Q9LQQ2 DNA repair protein RAD51 homolog 4 n=5 Tax=Embryophyta RepID=RA51D_ARATH Length = 322 Score = 87.5 bits (215), Expect = 7e-16, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 74/221 (33%), Gaps = 29/221 (13%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 ++L ED + T+STG D L GG G++ E+ GP SSGKT +Q A+ Sbjct: 76 LKLLEDLHRNKHTLSTGDKETDSLL-QGGFREGQLTELVGPSSSGKTQFCMQAAASVAEN 134 Query: 88 G-KTCAFIDAEHALDPIYARK---------LGVD-IDNLLCSQPDTGEQALEICDAL--- 133 ++D ++ + LG + +LC + L Sbjct: 135 HLGRVLYLDTGNSFSARRIAQFICSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEIT 194 Query: 134 ------ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 187 + ++VVDS+++L I +M L + + Sbjct: 195 LRLQMNVNESRLRLLVVDSISSLIT------PILGGSGSQGRALMVAIGYLLKKLAHEHS 248 Query: 188 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 228 ++ N G G G K VRL + R Sbjct: 249 IAILVTNHTVGAGGE--GGKTKPALGETWKSIPHVRLSLSR 287 >UniRef50_B7Q5G3 DNA repair protein RAD51/RHP55, putative n=1 Tax=Ixodes scapularis RepID=B7Q5G3_IXOSC Length = 354 Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 99/263 (37%), Gaps = 38/263 (14%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-----TCAFI 94 T+S G LD LG GGLP + E+ G SGKT LQ+ AQR +I Sbjct: 87 TLSFGCPILDRFLG-GGLPTRGVTELSGESGSGKTQFCLQLSLMAQRSLGDGMPIYVVYI 145 Query: 95 DAEHALDPIYARKLGVDI--------DNLLCSQPDTGEQALEI------CDALARSGAVD 140 E R++ ++ DN+L S GE A+ + +L R+ V Sbjct: 146 CTEDRFPDRRLRQMQRELGPAGRSLSDNVLVSHV--GELAMLMTCLETTLPSLRRTKRVG 203 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 ++V+DSVAAL ++E E G+ + + + + +S ++ +NQ+ I Sbjct: 204 LLVLDSVAALF-RSEYE-----QDQGIQRAADLRKLGTVLDRIWRSGVAVLCVNQVTDLI 257 Query: 201 GVM------FGNPETTTGGNALKFYASVRLDIRRIGAVKEG----ENVVGSETRVKVVKN 250 G + G + RL + + G + R++VV + Sbjct: 258 SSDHPMFPVTGASCVPSLGLTWGNVVTTRLFVSKTALTYAGARNSAEPEVNVRRLQVVCS 317 Query: 251 KIAAPFKQAEFQILYGEGINFYG 273 + ++ G+ Sbjct: 318 PSLPHRPEGCLYVVTQRGVQGIE 340 >UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9R3_GARVA Length = 495 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 17/210 (8%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 90 E ++ D I TG D LG GGL G + I G GK+TL L+ A ++ K Sbjct: 88 SEIQADDAMRIHTGFSEFDRVLG-GGLVPGSVTLIAGEPGIGKSTLLLKAAAYVSKQSKE 146 Query: 91 -----CAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 +I E + + R ++ N TG+ L+ L + + +VD Sbjct: 147 SNTPPVLYISGEESAAQVKLRASRINAVNDYLLLATTGD--LDTVLDLIETHHPTLAIVD 204 Query: 146 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205 S A E++G G S R ++ A L K +N ++ + + K G + G Sbjct: 205 S-AQTISAQEVDGITGGST---QVREVASA---LIDVAKANNIPILLVGHV-TKDGSIAG 256 Query: 206 NPETTTGGNAL-KFYASVRLDIRRIGAVKE 234 + + +F + +R + AVK Sbjct: 257 PRTLEHLVDTVCQFEGDTQTALRMLRAVKN 286 >UniRef50_O43502 DNA repair protein RAD51 homolog 3 n=37 Tax=Euteleostomi RepID=RA51C_HUMAN Length = 376 Score = 87.1 bits (214), Expect = 9e-16, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 71/224 (31%), Gaps = 48/224 (21%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAF 93 I T +LD LG GG+P+ + EI G GKT L +Q+ Q F Sbjct: 99 FIITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVF 157 Query: 94 IDAEHALDPIY---------------------------ARKLGVD--IDNLLCSQPDTGE 124 ID E + +D + ++ + Sbjct: 158 IDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYT 217 Query: 125 QALEIC----DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 + L D L+ V +++VD +A + L R+++ +++ Sbjct: 218 ELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRH-------DLDDLSLRTRLLNGLAQQMI 270 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 224 +I NQ+ KI G + A++RL Sbjct: 271 SLANNHRLAVILTNQMTTKIDRNQAL-LVPALGESWGHAATIRL 313 >UniRef50_B6JWI2 DNA repair and recombination protein radA n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JWI2_SCHJY Length = 358 Score = 87.1 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 101/287 (35%), Gaps = 62/287 (21%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------ 87 + + +TG +D AL GG+ + I EI G SGK+ +Q+ Q Sbjct: 69 DARETHFFTTGDTEIDKAL-HGGIALDHITEISGESGSGKSQFCIQLCLTVQLPKSVGGL 127 Query: 88 GKTCAFIDAEHALDPIYARKL--------------------GVDIDNLLCSQPDTGEQAL 127 + FI E L+ +L G + +LC ++ E + Sbjct: 128 DRAAVFISTESGLETRRLFQLAKFLSLQYPNDDLSYLSRHPGDRVYTILCPDLESQEHII 187 Query: 128 E-ICDALARSGAVDVIVVDSVAALTPKAEIE------GEIGDSHMGLAARMMSQAMRKLA 180 E L + + +IV+DSVAA +AE+ ++ +++ L Sbjct: 188 EYQLPILMQRVNIGLIVLDSVAANY-RAELRYSRNHPNASSLGNIATRGNQLAKLASNLR 246 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFG----------------------NPETTTGGNALKF 218 + N ++ NQ+ ++ + +P+T + G Sbjct: 247 ELAHKHNAAVVIANQVSDRVSRSYDQIGLFSLDYQSQWFNGWDDTDIDPKTPSLGLVWTN 306 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILY 265 + RL + + +++ ++++V + IA P + + I Sbjct: 307 NVTTRLALLKRPNSATRKSL----RKLRIVYSPIA-PTSEIDIAITL 348 >UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B3QT35_CHLT3 Length = 459 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 18/209 (8%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 R E ++ E +ST LD LG GGL +V + G GK+TL LQ+ A G Sbjct: 62 RFSELEDIEEERLSTRIEELDRVLG-GGLMTASVVLVGGEPGIGKSTLMLQLAANLV--G 118 Query: 89 KTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 K+ +I AE +L I A ++ + +++L E LE + DV++VDS Sbjct: 119 KSILYISAEESLHQIRNRAYRMNIRSEDILLV----SETQLENILDTVAAEKPDVLIVDS 174 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + IG + + KL K+ + I I K G + G Sbjct: 175 IQTIFS-------IGFESSPGTVTQVRECTSKLMHLAKREGITVFIIGHI-TKEGTIAGP 226 Query: 207 PETTTGGNA-LKFYASVRLDIRRIGAVKE 234 + L+F R + A+K Sbjct: 227 KVLEHIVDTVLQFEGDNHYRYRILRALKN 255 >UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteria RepID=RADA_LISMO Length = 457 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 68/193 (35%), Gaps = 15/193 (7%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 + + T L+ LG G +P G +V + G GK+TL LQV A K +I E Sbjct: 70 KRVETNMPELNRVLGGGVVP-GSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEE 128 Query: 99 ALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 156 ++ A +L V DNL E LE D +V+DS+ + Sbjct: 129 SIKQTKLRAERLQVSGDNLYVY----AETNLEAVQETIDFVKPDFVVIDSIQTVYHSDVT 184 Query: 157 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 216 S + + L K N + + + K G + G + + Sbjct: 185 SAAGSVSQV-------RECTATLMRIAKMQNIAIFIVGHV-TKEGAIAGPRLLEHMVDTV 236 Query: 217 KFYASVRLDIRRI 229 ++ R RI Sbjct: 237 LYFEGERHHAYRI 249 >UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales RepID=B9KHP2_ANAMF Length = 456 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 95/247 (38%), Gaps = 35/247 (14%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 +M + V + G+ LD LG GG+ G + I G GK+TL LQV A+ Sbjct: 60 VMPICGSSVEPVHRLCVGNDELDRVLG-GGIVAGSSILIGGEPGIGKSTLMLQVFASLAG 118 Query: 87 EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD---TGEQALEICDALARSGAVDVIV 143 + +C ++ E ++ I AR L S+P +L A + +V Sbjct: 119 QSHSCLYVSGEESVAQIRARA-----TRLNVSEPQIKLVATSSLSSVLNAACADNFAFLV 173 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DS+ + + + + A KL KQ N L + QI K G + Sbjct: 174 IDSIQTMHDEEIPSSPGTVLQVRMCA-------HKLIMLAKQRNIGLFLLGQI-TKDGAI 225 Query: 204 FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV-KVVKNKIAAPFKQAEFQ 262 G + + ++ EG N G++ R+ + +KN+ + F+ Sbjct: 226 AGPKTLEHLVDTVLYF--------------EGSN--GNQLRILRTIKNRFGPANEMGVFE 269 Query: 263 ILYGEGI 269 + G G+ Sbjct: 270 MS-GSGL 275 >UniRef50_A6STQ0 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6STQ0_BOTFB Length = 383 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 74/222 (33%), Gaps = 40/222 (18%) Query: 30 LGEDRSMDVETISTGSLSLDIAL--------------GAGGLPMGRIVEIYGPESSGKTT 75 L + S ISTG LD+AL GG+P G++ EIYGP GKTT Sbjct: 10 LQDLESSPTRCISTGLSLLDLALQNKDPLQVSTSVDHNHGGIPRGKVTEIYGPPGVGKTT 69 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARK------------LGVD--IDNLLCSQPD 121 L + + A + + ++DA H + + L D + N Sbjct: 70 LGMHLAARVLHQNENVVWVDASHPISGPRFSQILQESPSTSPEPLNNDTLLSNFNHFTTP 129 Query: 122 TGEQALEICDALARS---GAVDVIVVDSVAALTPKAEIEGEIGDSHMG---------LAA 169 T L + ++ +I++DS + L A + S Sbjct: 130 TLSHLLALLTYTTQNFPPENTSLIIIDSFSTLIDSAFPRNAVSTSTPKKPGVPNPSSRKF 189 Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 211 ++ + L N +I + Q K+ G + Sbjct: 190 PLLQYLINALQKLATTRNIAIIILTQCVTKMRPGLGAALIPS 231 >UniRef50_Q8GXF0 DNA repair protein RAD51 homolog 3 n=15 Tax=Magnoliophyta RepID=RA51C_ARATH Length = 363 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 47/232 (20%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----- 87 + I+T LD LG GG+ + EI G GKT + +Q+ Q Sbjct: 97 HEEESLPRITTSCSDLDNILG-GGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGG 155 Query: 88 -GKTCAFIDAEHALDPIYA-------------------RKLGVD---------IDNLLCS 118 G +ID E + A + + ++N+ Sbjct: 156 LGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYF 215 Query: 119 QPDTGEQALEICDAL----ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 174 + + + + + + L + + V V++VDS+ + + R++S+ Sbjct: 216 RVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQ-------DYDDLAQRTRVLSE 268 Query: 175 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 226 K K+ + ++ +NQ+ K G++ + R+ + Sbjct: 269 MALKFMKLAKKFSLAVVLLNQVTTKFSE-GSFQLALALGDSWSHSCTNRVIL 319 >UniRef50_B5JLQ1 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLQ1_9BACT Length = 271 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 7/136 (5%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY-GPESSGK 73 L +E + G+ + + + E + TG SLD AL GGL G + EI S G Sbjct: 54 LASLEGRLGE---LGVERAAPAESEILGTGVDSLDGAL-DGGLRSGLLTEIAESGASCGG 109 Query: 74 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 133 L L ++A +RE + A +D DP A G +++LL ++ + +A+ + DAL Sbjct: 110 QALLLHLLAGTRREQRFAALVDGADGFDPGSAS--GELLEHLLWARCRSAGEAMRVADAL 167 Query: 134 ARSGAVDVIVVDSVAA 149 R + +++VD Sbjct: 168 LRDENLGMVLVDLRGC 183 >UniRef50_Q7ZTX4 Zgc:56581 n=7 Tax=Euteleostomi RepID=Q7ZTX4_DANRE Length = 373 Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 95/288 (32%), Gaps = 53/288 (18%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 I L + + ST +LD L GGLP G + E+ GP GKT L + + A Sbjct: 65 ITALDLWKRKEELCFSTSLPALDRLL-HGGLPRGALTEVTGPSGCGKTQLCMMLSVLATL 123 Query: 87 E------GKTCAFIDAEHALDPIYA---------------RKLGVDIDNLLCSQPDTGEQ 125 +ID E A +L + + T + Sbjct: 124 PKSLGGLDSGVIYIDTESAFSAERLVEMAQSRFPEFFSVKERLLEMAARVHLFRELTCQD 183 Query: 126 ALEICDALARSG---AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 L+ + L ++++DSVA++ + E + + + + + Q L Sbjct: 184 VLKRLERLEEDIIACRAGLVILDSVASVV-RKEFDTSLPGNLTH-RSNFLGQEAAVLKYL 241 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNP---------------ETTTGGNALKFYASVRLDIR 227 ++ ++ NQI +G P T GN + RL ++ Sbjct: 242 SQEFCIPVVLTNQITTHVGEKLHCPQWNQTDASFEEDSGFVTAALGNTWSHSVNTRLIVQ 301 Query: 228 RIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 275 + ++ + K+ +A PF + I EGI + Sbjct: 302 YEDS---------ERRQIVIAKSPVA-PFAVLSYTIQ-KEGIRLEENM 338 >UniRef50_P25301 DNA repair protein RAD57 n=6 Tax=Saccharomycetaceae RepID=RAD57_YEAST Length = 460 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 25/184 (13%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCA 92 E +T +++D LG G G I EI+G S+GK+ L +Q+ + Q G C Sbjct: 98 ECFTTADVAMDELLGGGIFTHG-ITEIFGESSTGKSQLLMQLALSVQLSEPAGGLGGKCV 156 Query: 93 FIDAEHALDPIYARKL----------GVDIDNLLCSQPD---TGEQALEICDALA---RS 136 +I E L + G+ N+ + E + + + Sbjct: 157 YITTEGDLPTQRLESMLSSRPAYEKLGITQSNIFTVSCNDLINQEHIINVQLPILLERSK 216 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 G++ ++++DS++ +S + + KL + ++ NQ+ Sbjct: 217 GSIKLVIIDSISHHLRVELQNKSFRESQ--ENKNYLDRMAEKLQILAHDYSLSVVVANQV 274 Query: 197 RMKI 200 K Sbjct: 275 GDKP 278 >UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312A2 Length = 466 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 13/220 (5%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 +RLGE ++ +VE + TG LD LG G +P G +V I G GK+TLT +A Sbjct: 68 VRLGEVQASEVERLPTGIGELDRVLGGGIVP-GSLVLIGGSPGIGKSTLTTMAVANLTGA 126 Query: 88 GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV 147 G+ ++ AE + I R + L P E L A DV V+DSV Sbjct: 127 GRKTLYVSAEESAAQIKLRAERLPGAALEI--PVIAETDLGAVLATLERERPDVCVIDSV 184 Query: 148 AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 207 L AE+ G G + + ++ KQ ++ + + K G + G Sbjct: 185 QTLHA-AELTGAPGSVG------QVREVAGEIMRVAKQHRIAVLLVGHV-TKEGALAGPR 236 Query: 208 ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 + + + R R ++ +N GS + V Sbjct: 237 VLEHLVDCVLQFEGER--ERTYRTLRALKNRFGSTSEAGV 274 >UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C1A917_GEMAT Length = 465 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 77/211 (36%), Gaps = 13/211 (6%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 + LG S D TG D LG G +P G +V + G GK+TL LQV A + Sbjct: 60 VTLGSVTSSDTPRWRTGLDEFDFVLGGGIVP-GSMVLVGGEPGIGKSTLLLQVAARLEAA 118 Query: 88 GKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSG-AVDVIVV 144 G+ ++ E + + A +L D + + E L G V ++V Sbjct: 119 GQATLYVSGEESALQVRLRAERLAEDASAVSLLTETSLETILATAAQPTGDGRPVRALIV 178 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DS+ + + + A +L K S T + I + K G + Sbjct: 179 DSIQTVHTELLEGAPGNVGQVRECAA-------RLMRFAKDSGTTVFVIGHV-TKGGGIA 230 Query: 205 GNPETTTGGNALKFYAS-VRLDIRRIGAVKE 234 G + + ++ LD R + A K Sbjct: 231 GPKTLEHIVDTVLYFEGDSTLDHRVLRATKN 261 >UniRef50_C1EGX8 Rad51 DNA recombinase 2 n=2 Tax=Micromonas RepID=C1EGX8_9CHLO Length = 440 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 70/188 (37%), Gaps = 39/188 (20%) Query: 48 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT------CAFIDAE---- 97 LD ALG GG+P G I E+ GP +GKT + L + A + FID E Sbjct: 113 LDDALG-GGVPTGSISELVGPAGAGKTQMCLTLACACAAPKRCGGLESGVVFIDTEQRFS 171 Query: 98 -------------HALDPIYA-------RKLGVDIDNLLCSQPDTGEQALEICDALAR-- 135 L P +A R+L +L P T + L+ + L Sbjct: 172 SQRLAEIARAKFPETLSPAHAPDAASAERELESLTSRILVLTPSTLSEMLQRLNGLEEAL 231 Query: 136 -SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 V +++VDSVAAL G++ ++ Q L ++ N Sbjct: 232 IDRGVRLLIVDSVAALARAQFGRGQLTQRQE-----LLGQIASALKQLAERLGMAAFVTN 286 Query: 195 QIRMKIGV 202 Q+ ++G Sbjct: 287 QVTTRVGA 294 >UniRef50_Q8SZF1 RE02671p n=28 Tax=Drosophila RepID=Q8SZF1_DROME Length = 341 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 85/239 (35%), Gaps = 37/239 (15%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAF 93 +S G +LD G GG+ I E+ G GKT L LQ+ Q GK A+ Sbjct: 87 RVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKGVAY 145 Query: 94 IDAEHALDPIYARKL-----------------GVDIDNLLCSQPDTGEQALEICDALARS 136 I E + ++ + ++N + ++P + L + Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLA-CVINRIPRLMQQ 204 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 + +I++DSVAA+ + AR M + L + N ++ +NQ+ Sbjct: 205 HGIGLIIIDSVAAIFRLY--------NDYLERARHMRRLADALLSYADKYNCAVVCVNQV 256 Query: 197 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAP 255 + G E G RL + R+ + + + +++++ + Sbjct: 257 ATRDGQD----EIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILYSPETPN 311 >UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium jeikeium RepID=Q4JXK0_CORJK Length = 454 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 19/205 (9%) Query: 42 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 101 TG LD LG G +P G V + G GK+TL L+V AA ++G T + AE ++ Sbjct: 71 PTGIGELDRVLGGGIVP-GSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVLILTAEESVG 129 Query: 102 PI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 159 + A + G D L + + E L DAL ++I+VDS+ + +EG Sbjct: 130 QVRHRAERTGALHDKLYLASENDLENGLAQVDAL----NPELIIVDSLQTMQATG-VEGV 184 Query: 160 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 219 G R ++ + L K S T +I + + K G + G + + + Sbjct: 185 AGGV---AQTRAVTSTLTTL---AKMSGTPVIAVGHV-TKEGTVAGPRTIEHLVDVVLNF 237 Query: 220 ASVRL----DIRRIGAVKEGENVVG 240 + +R I + VG Sbjct: 238 EGDKHSSMRFLRGIKNRFGATDEVG 262 >UniRef50_D1H4Y9 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1H4Y9_VITVI Length = 371 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 84/260 (32%), Gaps = 62/260 (23%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI------AAAQREGKTCAF 93 + T LD ALG GG+P G + E+ GP GKT L++ A+ + Sbjct: 83 HLPTRLKGLDEALG-GGIPFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIY 141 Query: 94 IDAEHALDPIYARKLGVD----------IDN-----LLCSQPDT---GEQALEICDALAR 135 IDAE ++G + +L +P + ++L+ Sbjct: 142 IDAESKFSSRRMIEIGSKSFPEIFHVEGMAKEACPLILVLRPTSLSEFTESLQHIKISLL 201 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 V ++V+DS+AAL +G + + + + S ++ NQ Sbjct: 202 QNHVKLLVIDSMAALVTGEYDQGP-------TRQHSLGWHISFVKSVAEFSRIPIVVTNQ 254 Query: 196 IRM--------------------KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 +R F + G ++RL + Sbjct: 255 VRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVTIRLVLEAK------ 308 Query: 236 ENVVGSETRVKVVKNKIAAP 255 G +KV K+ I+ P Sbjct: 309 ---AGQRF-LKVAKSPISPP 324 >UniRef50_A3LTU6 Predicted protein n=1 Tax=Pichia stipitis RepID=A3LTU6_PICST Length = 541 Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 77/225 (34%), Gaps = 57/225 (25%) Query: 35 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REG--KTC 91 + ISTG +LD LG GG+P G I EI+G GK+ + Q+ Q EG K C Sbjct: 82 KSPSKFISTGLHTLDSDLG-GGIPTGEITEIFGSSGCGKSHMLAQLAMECQLNEGDCKEC 140 Query: 92 AFIDAEHALDPIYARKLG---------VDIDNLLCSQPDTGEQALEI------CDALARS 136 I E L+ ++ V +DN+ E I +++ Sbjct: 141 IHIGTESFLETKRLHQIQQSYESKGSTVSLDNISYIYCQDLESQDHIIYTQLPIHLESKA 200 Query: 137 GAVDVIVVDSVAALTPK--------------AEIEGEIGD-------------------S 163 G V ++V+DS+A + + E ++ D Sbjct: 201 GKVRLLVIDSIAQHLRREGSLSNSMYLEERIKQQEKDLKDCEDYQSIRSKQENNLKRFQK 260 Query: 164 HMGLAARMMSQAM-----RKLAGNLKQSNTLLIFINQIRMKIGVM 203 RM Q R L K+ N ++ +NQ+ Sbjct: 261 STKYRNRMTKQHYLYLLHRHLQKLAKKYNIAVVVVNQVSDHASTY 305 >UniRef50_Q5A2U1 Putative uncharacterized protein RAD57 n=1 Tax=Candida albicans RepID=Q5A2U1_CANAL Length = 511 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 55/216 (25%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC--AFI 94 D E ISTG S+D LG GG+P+G + EI+G GK+ Q+++ +E T +I Sbjct: 81 DSEFISTGLPSIDRELG-GGIPIGEVTEIFGASGCGKSHFLFQLLSNCGKEFSTSKNIYI 139 Query: 95 DAEHALDPIYAR--------KLGVDIDN---LLCSQPDTGEQALEICDAL---ARSGAVD 140 E L+ + + D+D + C ++ + L L + G Sbjct: 140 STESFLETKRLKDFIGRNSSNIDTDLDRISYIYCQDLESQDHILFTQLPLKLDSDKGKTK 199 Query: 141 VIVVDSVAALTPKAE--------------IEGEIGD--SHMGLAARMMSQAMR------- 177 ++V+DS+A + + EGEI D S + + M+Q R Sbjct: 200 LLVLDSIAQHFRREDSIMNSTYLKEKLEVQEGEIADDRSFQEVKRKQMNQLRRFNKSQKY 259 Query: 178 ---------------KLAGNLKQSNTLLIFINQIRM 198 L+ + N ++ +NQ+ Sbjct: 260 ASRTAKLYYICQLYQHLSRLAQDFNIAIVIVNQVSD 295 >UniRef50_B6TBD6 DNA repair protein RAD51 n=3 Tax=Andropogoneae RepID=B6TBD6_MAIZE Length = 298 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 99/266 (37%), Gaps = 51/266 (19%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA-QREG 88 L +D + + + TG +D LG GGL G++ E+ GP SSGKT + L + A + Sbjct: 51 LLKDVTENKHVLPTGLEGIDRLLG-GGLRQGQLTEVTGPSSSGKTQVCLHSASHAPVKHM 109 Query: 89 KTCAFIDAEHALDPIYARKL-----------GVDI---DNLLCS-QPDTGEQALEIC--- 130 ++D ++ P + G D+ + L Q E +I Sbjct: 110 GVVMYLDTTNSFSPSRIATIIDGTNDLSDRKGFDLLSKERLKTVMQSIICESVFDIFGMF 169 Query: 131 ------------DALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 177 + + G + ++++DS+++L + IG + + M+S AM Sbjct: 170 EVLHQLEVSLLNEKVIGDGRRICLLIIDSISSL-----LAPIIGGKYPQGRSMMISLAM- 223 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEN 237 L + N ++ N + G + K VRL I R Sbjct: 224 ILKKLAYEHNLAVLVTNHMVSAGNGAV----KPALGESWKSVPHVRLMISR--------E 271 Query: 238 VVGSETRVKVVKNKIAAPFKQAEFQI 263 + V+K+ + A + A+F + Sbjct: 272 HSSNICTGTVLKHTLLASGRTAKFVL 297 >UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae RepID=A8MLV2_ALKOO Length = 456 Score = 85.2 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 83/235 (35%), Gaps = 25/235 (10%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG--------SLSLDIALGAGGLPMGRI 62 + + + +K F K S + + + ++ + +G L+ LG GGL G + Sbjct: 33 MEEEMLESKKDF-KRSPTIVSQSKPQPIKEVKSGAYERYDTQINELNRVLG-GGLVKGSL 90 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQP 120 I G GK+TL LQ + ++ E + + I +L D+L Sbjct: 91 TLITGEPGIGKSTLILQASSTIANRYGKTLYVSGEESEEQIKMRGERLNSLSDDLYIV-- 148 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 E +++ + A I++DS+ L + S + A L Sbjct: 149 --SETNVDVIEKYIEEYAPVFIIIDSIQTLFKEDLSSAPGSVSQVKECA-------NNLM 199 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL-DIRRIGAVKE 234 K N + + + K G + G + + + R + R + A+K Sbjct: 200 RIGKSKNIPMFIVAHV-TKQGELAGPRVLEHMVDTVLHFEGERTQEFRILRALKN 253 >UniRef50_Q6BWA8 DEHA2B13024p n=2 Tax=Debaryomyces hansenii RepID=Q6BWA8_DEBHA Length = 569 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 29/170 (17%) Query: 7 KQKALAAALG-QIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 K++ A+ ++++FGK E I TG +LD L GG+P+G I EI Sbjct: 69 KKECTEASTQCSLKERFGK-------EQTGDKCHFIPTGLEALDRQLN-GGIPLGEITEI 120 Query: 66 YGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEHALDPIYARKL----------GVD 111 +G GK+ L LQ+ Q E C +I E L+ + V Sbjct: 121 FGASGCGKSQLLLQLCIYTQLVGDPENNQCIYISTESPLETRRLHDMIDHYNAKSDKKVS 180 Query: 112 IDN---LLCSQPDTGEQALEICDALA---RSGAVDVIVVDSVAALTPKAE 155 +DN + C + + L + G V I++DS++ E Sbjct: 181 MDNISCIYCQDIENQDHTLFTQLPVKLSQEKGKVRAIIIDSISHHLRLEE 230 >UniRef50_Q9UUL2 DNA repair protein rhp57 n=1 Tax=Schizosaccharomyces pombe RepID=RAD57_SCHPO Length = 354 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 92/277 (33%), Gaps = 60/277 (21%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---- 87 + + ++TG + LD L GG+P+G++ EI G SGK+ +Q+ Q Sbjct: 66 SASKVTSKYLTTGDVKLDETL-HGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLG 124 Query: 88 --GKTCAFIDAEHALDPIYARKL---------------------GVDIDNLLCSQPDTGE 124 K FI E L+ +L G + +LC ++ E Sbjct: 125 GMNKAAVFISTESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQE 184 Query: 125 QALE-ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH------MGLAARMMSQAMR 177 ++ L + ++++DSVA+ +AE+ SH + + + Sbjct: 185 HIIQYQLPILFNRDKIGLVILDSVASNY-RAELRYNRSKSHFRDLDNIAKRGNQLGKLAM 243 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMF----------------------GNPETTTGGNA 215 L Q ++ NQ+ +I + NP+ + G Sbjct: 244 TLRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPKIPSLGLV 303 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKI 252 S RL + + N G RV N Sbjct: 304 WTNNISTRLALIK--KTDSATNNSGRIFRVVYSPNSP 338 >UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEX2_9BACT Length = 444 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 19/186 (10%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99 + TG D+ LG GG+ G ++ I G GK+TL LQ+ ++ K + E + Sbjct: 65 RLLTGIKEFDLVLG-GGIVKGMLILIGGEPGIGKSTLMLQLSEWMGKQNKKTLYCSGEES 123 Query: 100 LDPIYARK--LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV--AALTPKAE 155 + I R L V +N+ + E +E + D+ +VDS+ ++ Sbjct: 124 AEQIRLRSKHLKVTSENIYLLCTNNAEHIIEAIE----DNKPDLAIVDSIQSVSIPSLDA 179 Query: 156 IEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNA 215 + G + + + +L +K L + + K G++ G + Sbjct: 180 LPGTVT---------QLRETTSRLLRTVKNLGIPLFLVGHV-TKEGLVAGPKIIEHMVDT 229 Query: 216 LKFYAS 221 + ++ Sbjct: 230 VLYFEG 235 >UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum sp. Group II RepID=A3EUB1_9BACT Length = 461 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 111/313 (35%), Gaps = 46/313 (14%) Query: 23 GKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 82 G +R+ + + VE S+G D LG GG G + + G GK+TL LQ +A Sbjct: 55 GTPRALRMEDVGKVAVERTSSGFREFDRVLG-GGFVRGSFILLGGDPGVGKSTLALQAVA 113 Query: 83 AAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 140 G + E + + + R +LG +L E LE + + + Sbjct: 114 H-MANGHKVLYAAGEESPEQVRMRYDRLGRKGGDLFILP----ETDLEAIVREVKRLSPE 168 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 +VVDS+ +T A+ +GL + ++ L K+++ ++ + + K Sbjct: 169 FLVVDSIQTVTMGADGP---SSGSVGL----LRESASVLLELAKRASVTVLIVGHV-TKE 220 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAE 260 GV+ G + + + R R+ ++ VKN+ P ++ Sbjct: 221 GVIAGPRVLEHLVDTVLYLEGDRSHPVRL---------------LRTVKNRFG-PTRELG 264 Query: 261 FQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI 320 + +G+ + + +G K + + L+ E+ Sbjct: 265 IFEMSPDGLREVENA--------------SSFFLEGRKERLSGSVVVSSLEGTRPLLVEL 310 Query: 321 EKKVRELLLSNPN 333 + V NP Sbjct: 311 QSLVSPTTFPNPR 323 >UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A4A3_NATTJ Length = 456 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 74/197 (37%), Gaps = 15/197 (7%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 ++ L E +ST LD LG G +P G +V G GK+TL LQ Sbjct: 60 VITLSEIDLEKEPRMSTSIDELDRVLGGGIVP-GSVVLFGGDPGIGKSTLMLQASHNLDT 118 Query: 87 EGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 + ++ E +L + R +LG++ ++LL + L + ++++ Sbjct: 119 LNFSTLYVSGEESLSQLKLRCERLGLNSESLLFASITD----LRELENRLNEQKPQILII 174 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DS+ +L EIE G + L K++ + + + K G + Sbjct: 175 DSIQSLYT-PEIEAPPGSLS------QVKHCAAVLHSVAKENEIACLIVGHV-TKAGQIA 226 Query: 205 GNPETTTGGNALKFYAS 221 G + + ++ Sbjct: 227 GPKVLEHIVDTVLYFEG 243 >UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteria RepID=RADA_BACHD Length = 457 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 15/193 (7%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 I T L+ LG G +P G +V + G GK+TL LQ+ A + +I E Sbjct: 70 PRIDTSMKELNRVLGGGIVP-GSLVLVGGDPGIGKSTLLLQLSARLADLKQRVLYISGEE 128 Query: 99 ALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 156 ++ R +LGV D+L E +E + ++++DS+ + Sbjct: 129 SVKQTKIRSDRLGVLSDHLYVL----AETDMEKIEQAIGEVDPTLVIIDSIQTVYQDEIT 184 Query: 157 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 216 + + + K + + + + K G + G +++ Sbjct: 185 SAPGSVAQVRECTASFMR-------IAKTTGVAIFIVGHV-TKQGAIAGPKLLEHMVDSV 236 Query: 217 KFYASVRLDIRRI 229 ++ R RI Sbjct: 237 LYFEGERHHTYRI 249 >UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKL6_FIBSS Length = 463 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 16/244 (6%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 ++ L + + D +ST + D LG GG G +V I G GK+TL L +A Sbjct: 63 KVVLLKDVAAEDTRRLSTANSEFDRVLG-GGFAPGSLVLIGGDPGIGKSTLVLTTLATMN 121 Query: 86 REGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 G ++ E + + + +L V +++ E LE A+ V+V Sbjct: 122 AAGVKALYVSGEESACQVKLRSERLNVSGSDMMLL----CETNLEKILEQAKEVKPQVLV 177 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DS+ + K+++ G G A + + L K S + I I + K G + Sbjct: 178 IDSIQTVY-KSDLSGTPG------CATQLRECTLDLMVFAKNSGCITILIGHV-TKDGQI 229 Query: 204 FGNPETTTGGNALKFYASVR-LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQ 262 G + + ++ R R + +K ++ + + ++ Sbjct: 230 AGPRILEHMVDTVVYFEGDRNHQYRLLRTIKNRFGATDEIGVFEMTSHGLNPVLNPSKVF 289 Query: 263 ILYG 266 + G Sbjct: 290 LQEG 293 >UniRef50_C4QGE0 DNA repair protein rad51 homolog 3, r51h3, putative n=1 Tax=Schistosoma mansoni RepID=C4QGE0_SCHMA Length = 999 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 96/301 (31%), Gaps = 84/301 (27%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAF 93 I + S D LG GG P GR+ E+ G GKT LQ Q F Sbjct: 708 YIVSMCRSFDDLLG-GGFPTGRLTELCGEPGVGKTQFCLQACVNVQIPKWFSGLNGQALF 766 Query: 94 IDAEHALDPIYARKLGVDID-----NLLCSQPD------------------TGEQALEIC 130 +D E P R++ + + + S P+ +G + I Sbjct: 767 LDTEGNFIPERVRQMASALADHCKRHYIESNPERTDESFIKQYCPTVESLMSGIHYIRIT 826 Query: 131 DALA-------------RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 177 D L + + +IVVDS+ AL + + + + R+++ + Sbjct: 827 DHLKLLAVCRHLEQFCDQHPLIRLIVVDSI-ALPFRYDFD------DIPQRNRLLASVTQ 879 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPE------------------------TTTGG 213 L + +I NQI K N E G Sbjct: 880 MLLCVAGRQKAAVILTNQITTKFDAKNLNSEQVDCVIEGDKVGKEQCRNDQNSCLVPALG 939 Query: 214 NALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 273 ++ S+R+ + R+ G +V+++K+ P+ +QI G + Sbjct: 940 DSWGHICSLRVFLARLT--------TGIR-QVRLLKH-PGKPYGVGYYQITTGGIRDLIQ 989 Query: 274 E 274 Sbjct: 990 N 990 >UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponema RepID=RADA_TREPA Length = 455 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 18/238 (7%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 93 R+ D + IS G D LG G + I I G GK+TL LQ+ AA GK+ + Sbjct: 65 RAQDAQRISCGIAEFDRVLGGGAVRRSAI-MIGGEPGIGKSTLLLQIAAAC---GKSVLY 120 Query: 94 IDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 151 + E + I R +L + I N+ E + + + ++VDS+ + Sbjct: 121 VSGEESPGQIRGRADRLNIPIQNIELLCATRVEDVERVLNTRCPT----FVIVDSIQTVF 176 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 211 + + + A +L +K+ +++L F + K G + G Sbjct: 177 SPEAGAIPMTINQLKYCA-------NELIAWVKERDSVLFFTAHV-TKDGNIAGPKVVEH 228 Query: 212 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 + + + DIR + A+K V + +N ++A A F I +G+ Sbjct: 229 MVDTVISFERNEEDIRFLRALKNRFGSVDELGIFTMGENGLSAVQDTAGFFISTRQGM 286 >UniRef50_UPI00017F0C6E PREDICTED: similar to RAD51 homolog, partial n=1 Tax=Sus scrofa RepID=UPI00017F0C6E Length = 593 Score = 84.4 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 20/149 (13%) Query: 89 KTCAFIDAEHALDPIY----ARKLGVD----IDNLLCSQPDTGEQA---LEICDALARSG 137 +ID E P A + G+ +DN+ ++ + L A+ Sbjct: 422 GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES 481 Query: 138 AVDVIVVDSVAALT-PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 ++++DS AL GE+ M LA + +R L + ++ NQ+ Sbjct: 482 RYALLIIDSATALYRTDYSGRGELSARQMHLA-----RFLRMLLRLADEFGVAVVITNQV 536 Query: 197 RMKIGV---MFGNPETTTGGNALKFYASV 222 ++ +P+ GGN + ++ Sbjct: 537 VAQVDGAAMFAADPKKPIGGNIIAHASTT 565 >UniRef50_B5IFC8 Putative uncharacterized protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IFC8_9EURY Length = 243 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 42/232 (18%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 + E +M V TG LD ALG GG P I + GP GKT L++Q +A R G Sbjct: 7 TIQECPTMTVSVAPTGIKKLDEALG-GGFPRNGISLVVGPSGIGKTILSVQWLAEGVRNG 65 Query: 89 KTCAFIDA-----------------EHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 131 +TC +I + A+D I+ + + +L+ P T E+ L+I Sbjct: 66 ETCVYISTTLPSEAVIAYYGDMKLLKDAVDKIHWYDMYISPKDLI---PFTKEKILKIFH 122 Query: 132 ALAR---------SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 + +D +V+DS+ IE +GD M R + + Sbjct: 123 KVMPDFFDEQLNLKKPIDRLVLDSLTT------IEKIVGDISMF---RYLGATWIRFFH- 172 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 234 + + I ++ M + + F + +R + VK Sbjct: 173 --DNKISTMLIEEMDEDGKKMGEMRNFSEATILMDFMEHQNMHMRALKIVKR 222 >UniRef50_B6UY45 Spindle B (Fragment) n=1 Tax=Drosophila melanogaster RepID=B6UY45_DROME Length = 404 Score = 84.0 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 76/215 (35%), Gaps = 37/215 (17%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAF 93 +S G +LD G GG+ I E+ G GKT L LQ+ Q GK A+ Sbjct: 87 RVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145 Query: 94 IDAEHALDPIYARKL-----------------GVDIDNLLCSQPDTGEQALEICDALARS 136 I E + ++ + ++N + ++P + L + Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLA-CVINRIPRLMQQ 204 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 + +I++DSVAA+ + AR M + L + N ++ +NQ+ Sbjct: 205 HGIGLIIIDSVAAIFRLY--------NDYLERARHMRRLADALLSYADKYNCAVVCVNQV 256 Query: 197 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 231 + G E G RL + R+ Sbjct: 257 ATRDGQD----EIPCLGLQWAHLGRTRLRVSRVPK 287 >UniRef50_A4R1B5 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4R1B5_MAGGR Length = 548 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 27/184 (14%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFI 94 TIST LD ALG GG+P G + EI G +GKT L ++ A Q G+ +I Sbjct: 136 TISTLDPELDAALG-GGIPTGYVTEITGESGAGKTQFLLSLLLAVQLPPPHGLGRKAMYI 194 Query: 95 DAEHALDPIYARKL------------GVDIDNLLCSQP----DTGEQALEICDAL-ARSG 137 E AL ++ +D++L QP + + L L A Sbjct: 195 PTEAALSTRRVAQMLAANPLLLSASPRPSLDSILSLQPLGDIEAQDHILSFQVPLEAARR 254 Query: 138 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR--MMSQAMRKLAGNLKQSNTLLIFINQ 195 V +I++DSVAA +AE + G GLAAR + + +L + N ++ NQ Sbjct: 255 NVGLIILDSVAANF-RAEYDA-AGSRSTGLAARSAELVRLGMQLRNLARSLNLAVVVANQ 312 Query: 196 IRMK 199 + + Sbjct: 313 VADR 316 >UniRef50_B9WC87 DNA repair protein, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9WC87_CANDC Length = 512 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 25/185 (13%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 ++ + +D E ISTG S+D LG GG+P+G I EI+G GK+ Q+++ ++ Sbjct: 71 VVPTSVNVLLDSEFISTGLPSIDRELG-GGIPIGEITEIFGASGCGKSHFLFQLLSNCRK 129 Query: 87 EGKTC--AFIDAEHALDPIYARKL------GVDID-----NLLCSQPDTGEQALEICDAL 133 E T +I E L+ + +D D + C ++ + L L Sbjct: 130 EFPTSKNIYISTESFLETKRLKDFIGTTSSNIDTDLDSISYIYCQDLESQDHILFTQLPL 189 Query: 134 ---ARSGAVDVIVVDSVAALTPKAEI--------EGEIGDSHMGLAARMMSQAMRKLAGN 182 + ++V+DS+A + + E R+ + K Sbjct: 190 KLDSDKEKTKLLVIDSIAQHFRREDSIMNSTYLKEKLEAQEEEIAEDRLFQEVKTKQMNQ 249 Query: 183 LKQSN 187 L++ N Sbjct: 250 LRRFN 254 >UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C9Y705_9BURK Length = 665 Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 16/214 (7%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 + L + + DVE TG LD LG G+ G +V I G GK+TL LQ + + Sbjct: 54 TAEVTVLSDIEAQDVERTPTGHEELDRVLGG-GMVEGGVVLIGGDPGIGKSTLLLQALDS 112 Query: 84 AQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 141 QR GK ++ E + + +R+LG+D + E LE A + DV Sbjct: 113 LQRSGKNTLYVTGEESGAQVALRSRRLGLDHSQVKVL----AEIQLEKILATLEANRPDV 168 Query: 142 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 V+DS+ + + + + A +++A K S T ++ + + K G Sbjct: 169 AVIDSIQTVYSEQLTSAPGSVAQVRECAAHLTRA-------AKASGTAIVLVGHV-TKEG 220 Query: 202 VMFGNPETTTGGNALKFYASVRL-DIRRIGAVKE 234 + G + + ++ R + A+K Sbjct: 221 ALAGPRVLEHMVDTVLYFEGDTHSQFRLVRAIKN 254 >UniRef50_UPI0001758334 PREDICTED: similar to GA17378-PA n=1 Tax=Tribolium castaneum RepID=UPI0001758334 Length = 272 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 29/202 (14%) Query: 29 RLGEDRSMDV-ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 ++G M ISTG ++D A+ GG+ + RI EI G GKT L LQ+ AQ Sbjct: 24 KIGTAHQMPKWHRISTGCSAID-AITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLP 82 Query: 88 ------GKTCAFIDAEHALDPIYAR-----------KLGVDI-DNLLCSQPDTGEQ---- 125 GK+ ++ E A + LG++ DN+ EQ Sbjct: 83 ISLGGLGKSVVYLCTEDAFPIKRLKDLAITYSLKYHDLGINFEDNIFIEHLADVEQLKKC 142 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 L V ++V+DS+A + ++ + + ++ + KL K+ Sbjct: 143 LSNSLTKLLLVKNVGLVVIDSIAGIFRSETLDVNYKNRNQDFI--LIVTLLNKL---AKK 197 Query: 186 SNTLLIFINQIRMKIGVMFGNP 207 ++ +NQ+ P Sbjct: 198 YGFAVVCVNQVTDNPTTNVTEP 219 >UniRef50_B0WMV3 DNA-repair protein XRCC3 n=2 Tax=Culicini RepID=B0WMV3_CULQU Length = 281 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 45/222 (20%) Query: 45 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALD 101 SLD L AGG+ +VEI G SGKT L L + Q+ E + +I EH Sbjct: 34 VASLDRLLCAGGISARGVVEIAGDAGSGKTQLALHLALTCQQQCPERRGVVYISTEHPFP 93 Query: 102 PIYARKL------------------------------GVDI---DNLLCSQPDTGEQALE 128 ++ G+D+ +++L + + + Sbjct: 94 SKRLVQMEQTLRNSSGVGHEVGKYSDNIFVEHLNNPVGLDLIYFEDVLINNSALEQCITD 153 Query: 129 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 188 L + + ++V+DS+AA+ E E +S + + L ++ + Sbjct: 154 RLPVLLENNPIRLLVIDSIAAVYADEEDYVERAESFR--------RLVHSLHALQERFDF 205 Query: 189 LLIFINQIRMKIGVMFG-NPETTTGGNALKFYASVRLDIRRI 229 + + NQ+R + G G A R+ +RRI Sbjct: 206 VTVCTNQVRAVVDDYDGEEKVIPALGLAWGSLVHTRIQLRRI 247 >UniRef50_O75771 DNA repair protein RAD51 homolog 4 n=32 Tax=Euteleostomi RepID=RA51D_HUMAN Length = 328 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 77/250 (30%), Gaps = 25/250 (10%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EG 88 L E+ +STG SLD L GL G + EI G SGKT + L + A Sbjct: 71 LYEELKTSTAILSTGIGSLDKLL-DAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQ 129 Query: 89 KTCAFIDAEHALDPIYARKL-----------GVDIDNLLCSQPDTGEQALEICDALARSG 137 + ++D+ L +L + + Q L++ L R Sbjct: 130 QNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQEL-RGT 188 Query: 138 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR----MMSQAMRKLAGNLKQSNTLLIFI 193 + S + + +G R +M Q R+L + ++ Sbjct: 189 VAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVT 248 Query: 194 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 253 N I P G + F S R+ + I EG G + K+ Sbjct: 249 NHITRDRDSGRLKPAL---GRSWSFVPSTRILLDTI----EGAGASGGRRMACLAKSSRQ 301 Query: 254 APFKQAEFQI 263 Q I Sbjct: 302 PTGFQEMVDI 311 >UniRef50_B5I9Z9 KaiC domain protein n=3 Tax=Aciduliprofundum boonei T469 RepID=B5I9Z9_9EURY Length = 227 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 32/187 (17%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99 I TG LD L GG+P G V + G +GKTT +Q I G+ C F+ E Sbjct: 2 RIKTGIEGLDDMLN-GGIPKGHTVAVIGAFGTGKTTFAMQFIWEGLINGERCIFLSLEED 60 Query: 100 LDP--IYARKLGVDIDNLLCSQ-------PDTGEQALEICD----ALARSGAVDVIVVDS 146 D A K G D L SQ P+ + ++E + L + I VDS Sbjct: 61 EDSVVESASKFGWDYSKYLGSQLQLLKLDPEDAKSSVERLESDIPELIKEFEATRIAVDS 120 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 ++ + + M + + + KLA ++K+S +F ++ K N Sbjct: 121 ISLI------------TMMYDSIDEKRKVVFKLAKSIKESGATAVFTAEVDPK------N 162 Query: 207 PETTTGG 213 P+ + G Sbjct: 163 PKVSRDG 169 >UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD6_9BACT Length = 440 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 99/269 (36%), Gaps = 33/269 (12%) Query: 44 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 103 G D LG G +P G++V + G GK+T+ ++ + ++ E ++D I Sbjct: 75 GIGEFDRVLGGGFVP-GQVVLLAGEPGIGKSTILTEIAKNL--KDLKVLYVCGEESVDQI 131 Query: 104 YAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 161 R ++G + +NLL + I D + + +++VDSV L + + Sbjct: 132 KIRVSRMGYNAENLLVLPETNVD---IIVDNIDEKKEIGLVIVDSVQTLFSEELLGSPGS 188 Query: 162 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 221 + +++ L K++N ++ + + K GV+ G + + + Sbjct: 189 LVQVRGCSQI-------LTNTAKKTNIPIVLVGHV-TKGGVVAGPKVLEHIVDTILYLEG 240 Query: 222 --------VRLDIRRIGAVKEGENVVGSETRVKVVKNK---------IAAPFKQAEFQIL 264 +R R GAV E + ++ VKN + +P + Sbjct: 241 DSQHLFRILRTSKNRFGAVSEVGIFEMVDNGIREVKNPSELFLKQRLLKSPGSCVTVVME 300 Query: 265 YGEGINFYGELVDLGVKEKLIEKAGAWYS 293 + F + + + + + +S Sbjct: 301 GNRPLLFEIQALTVPTSFGYPRRTSSGFS 329 >UniRef50_C5DPN1 ZYRO0A04708p n=2 Tax=Saccharomycetaceae RepID=C5DPN1_ZYGRO Length = 463 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 25/192 (13%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFI 94 +T + +D ALG GG+ I E++G S+GK+ L +Q+ + Q C +I Sbjct: 87 FTTTDVGIDEALG-GGIYTHGITEVFGESSTGKSQLLMQLCLSVQLPTNMGGIKGKCVYI 145 Query: 95 DAEHALDPIYARKL----------GVDIDNLL---CSQPDTGEQALEICDALARS---GA 138 E L + GV +N+ C + L + + GA Sbjct: 146 STEGDLPTQRLASMISAREELVKHGVSQENVYTVTCCDLINQDHILNVQLPILLENSRGA 205 Query: 139 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 198 + +I++DS++ + D + Q +L + ++ NQ+ Sbjct: 206 IKLIIIDSISHHMRVELPTRDFKDHQ--DNRFYVDQVAERLLDLANKHALAVVVANQVSD 263 Query: 199 KIGVMFGNPETT 210 + P Sbjct: 264 RPLFESPEPYVA 275 >UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales RepID=Q487B6_COLP3 Length = 462 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 87/225 (38%), Gaps = 21/225 (9%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 ++ E S+D E STG LD L GG+ G + I G +GKTTL ++A + Sbjct: 66 KINEIESIDAEKRSTGIGELDRVL-CGGVTTGSVNIISGDPGAGKTTLLSDLVARMSKT- 123 Query: 89 KTCAFIDAEHALDP--IYARKLGVDI--DNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 + AE +L +L +D DNL E ++E + V+ Sbjct: 124 HASLYCTAEESLSQFKNRVHRLKLDYDEDNLYLL----AETSVEAIIDELDKNKIKFAVI 179 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DS+ A+ + S + +A+ ++Q KQ+N + I + K + Sbjct: 180 DSIQAVVTENANGSPGSPSQVKSSAQSLTQY-------CKQNNVTMFIIAHV-NKNNEIA 231 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVK 249 G +AL + IR + A K N G V + K Sbjct: 232 GPQTLVHIVDALLHIDTNDGQIRTLRANK---NRFGDIDTVGIFK 273 >UniRef50_Q54PJ7 DNA repair protein RAD51 homolog 3 n=1 Tax=Dictyostelium discoideum RepID=RA51C_DICDI Length = 381 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 45/223 (20%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFI 94 I T +D L GG P+ +I EI G GKT + Q++ +I Sbjct: 64 IITFCSEIDQMLN-GGTPLKKITEICGVPGIGKTNMAFQLLVNTSIPFDLGGVQGKAIYI 122 Query: 95 DAEHALDPIYARKLGVDIDN--------------------------LLCSQPDTGEQALE 128 D E + R++ + N + + + + Sbjct: 123 DTEGSYSCQRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLNSIYYYRVYHYIEIIS 182 Query: 129 ICDALA----RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 + L ++ V +IVVDS+ MGL R + + L Sbjct: 183 LIHQLPLFLEKNKDVKLIVVDSITYPF-------RCDFKDMGLRTRSLLSLAQNLMNIAT 235 Query: 185 QSNTLLIFINQIRMKIGVMFGNPE-TTTGGNALKFYASVRLDI 226 + N ++ +NQ+ KI G + + R+ + Sbjct: 236 RYNLAVVVMNQVTTKISPNQKESILVPYLGESWTHICTYRMVL 278 >UniRef50_B2ZYC0 Rec A-like recombinase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYC0_9CAUD Length = 481 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 31/215 (14%) Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 +I+VDS A+ P+A + E ++ +GL AR ++ + ++ G L Q ++ +NQ+R Sbjct: 237 ALILVDSYPAMNPEAN-DNEEANNSLGLHARFFAKHLPRVKGRLAQKMVAMVGVNQLREV 295 Query: 200 IGVMFGNPETTTGGNALKFYASVR--LDIRRIG----AVKEGENVV-------GSETRVK 246 M+G E G AL+F + VR + R G A +GE V G + R + Sbjct: 296 PMAMYGPKEKEACGQALRFNSDVRNWWNSRASGMPFNAKFDGEERVEIEPSADGGKDRYR 355 Query: 247 VV-----KNKIAAPFKQAEFQILYG------EGINFYGELVDLGVKEKLIEKAGAWYSYK 295 V KNK+A P ++ +I G + + + + + + Sbjct: 356 YVQVVNKKNKLANPGRKMWVRIWVSDSSGKARGFDPFFDTMHYLQSTGQLTAKNRKNMFL 415 Query: 296 G-EKIGQGKAN-----ATAWLKDNPETAKEIEKKV 324 E +G K + W+ + E +I + + Sbjct: 416 DLEGMGAAKRSIDWGTLKKWVLGSKEEKTKISQAL 450 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%) Query: 14 ALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 73 + +I K+ G + D +V+ +STG L+ D+ LG G P + G E GK Sbjct: 45 TMDEISKRQGVDT------DLMDNVKPLSTGLLAYDLILGGGIRP--AMYTSAGFEQGGK 96 Query: 74 TTLTLQVIAAAQREGKTCAFIDAEHA 99 TT + ++AAA + G AF D E + Sbjct: 97 TTGAIALMAAAVKAGIPTAFWDYEGS 122 >UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales RepID=D0L455_GORB4 Length = 461 Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 16/209 (7%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 R+ E + + TG D LG G +P G ++ + G GK+TL L+ + G Sbjct: 58 RITEIDAASSAAVPTGIGEFDRVLGRGVVP-GSVILLAGEPGVGKSTLLLETVKHWAGLG 116 Query: 89 KTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 +T +I E + + A + G +N+ + E L + +++VDS Sbjct: 117 RTALYITGEESAGQVRMRAERTGAVHENVYLA----AESDLATILGQVDAVRPSLMIVDS 172 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 V + G G + R ++ A L K +I + + K G + G Sbjct: 173 VQTVVAT----GADGVTGGVTQIRAVTTA---LVSLAKNRGIAVILVGHV-TKDGAVAGP 224 Query: 207 PETTTGGNALKFYASVRLD-IRRIGAVKE 234 + + + R +R + +K Sbjct: 225 RSLEHLVDVVLSFEGDRHSTLRMVRGIKN 253 >UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobacteria RepID=B0RY20_XANCB Length = 463 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 15/206 (7%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 I L + + + +STG D LG GGL G +V I G GK+TL LQ +A+ Sbjct: 65 KITALKDVQQSEQARVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALAS-M 122 Query: 86 REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 ++ E +L + R + +D+ L E +E A +IV D Sbjct: 123 ASTLPVLYVTGEESLAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVAD 180 Query: 146 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205 SV L ++ S + +A +L K++ T + + + K G + G Sbjct: 181 SVQTLWTESLTAAPGSVSQVRESAA-------RLVRYAKETGTAVFLVGHV-TKEGGIAG 232 Query: 206 NPETTTGGNALKFY---ASVRLDIRR 228 +A+ ++ + R + R Sbjct: 233 PRVLEHMVDAVLYFEGESGSRFRLLR 258 >UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acetobutylicum RepID=Q97EC5_CLOAB Length = 450 Score = 81.7 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 86/254 (33%), Gaps = 31/254 (12%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E T + L+ LG GGL G I I G GK+TL LQ+ + ++ E Sbjct: 65 ERYDTNNTELNRVLG-GGLVKGSITLISGAPGIGKSTLLLQICQDIALKYGKVLYVSGEE 123 Query: 99 ALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEI 156 + I R +LGV N+ E +E + + +++DS+ L Sbjct: 124 SEHQIKMRGDRLGVTSANIYIL----AETNMESIERHVENIKPAFVIIDSIQTLYKDQIT 179 Query: 157 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 216 S + A + K N + + K G + G + + Sbjct: 180 SAPGSVSQVRECA-------NDIMRIAKTDNIPFFIVAHV-TKQGELAGPRVLEHIVDTV 231 Query: 217 KFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV 276 + R + RI ++ VKN+ + F++ EG+ Sbjct: 232 LTFEGQRTEEFRI---------------LRTVKNRFGTTSEIGVFEMKE-EGLEQIHNPS 275 Query: 277 DLGVKEKLIEKAGA 290 L ++E + G+ Sbjct: 276 SLFLEETNFNQEGS 289 >UniRef50_B0XGX6 RAD51C protein n=3 Tax=Culicini RepID=B0XGX6_CULQU Length = 275 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 85/236 (36%), Gaps = 45/236 (19%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------ 87 + + I T LD A+G G+ +G I E GP SGKT + LQ+ A Sbjct: 12 QEARLPGIITFCKDLDHAIGHPGVSVGLITEFCGPPGSGKTQMCLQLCVNANLPKELGGL 71 Query: 88 GKTCAFIDAEHALDPIYARKLGVD----IDNLL-CSQPDTGE------------------ 124 G ++D P R++ ++ S+P E Sbjct: 72 GGKSLYLDTNFGFSPDRLREIATACVQHCQRIVRTSRPQLAEVTSKFTAESVMESVLYNH 131 Query: 125 --------QALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 ++++ + L + G + ++V+DS + L + IE + R+ Sbjct: 132 VHVCNDLNKSIDTLERLLKLGEKIRLVVIDSYSFLI-RCNIENTLE------RIRIDHTV 184 Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 231 + +L +Q ++ N + K+ + G++ + R+ + + G+ Sbjct: 185 LNRLQILAQQFKFAIVLTNDVTTKLNGTDPSTIAPALGDSHGHRINQRIVLGQTGS 240 >UniRef50_Q5BL30 X-ray repair complementing defective repair in Chinese hamster cells 3 n=6 Tax=Clupeocephala RepID=Q5BL30_DANRE Length = 352 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 45/248 (18%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCA 92 +S LD + GGLP+ I E+ G ++GKT LQ+ + Q Sbjct: 80 HRLSFACPVLDGLM-RGGLPLRGITELAGESAAGKTQFCLQLCLSVQYPQEHGGLNSGAV 138 Query: 93 FIDAEHALDPIYAR-------KLGVDI-----------DNLLCSQPDTGEQALEICDA-- 132 +I E + R +L D+ DN+ E AL++C + Sbjct: 139 YICTEDSFPIKRLRQLITQQPRLRPDLPPALIHSLRFSDNIYIEHAADLE-ALQVCVSQR 197 Query: 133 ---LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 189 L + G V ++VVDSVAAL E L A S + +L+ Sbjct: 198 VPVLLKRGLVRLLVVDSVAALFRSEFQADEAVQRSRHLLA--FSSTLHRLSHT---YAAP 252 Query: 190 LIFINQIRMKIG---------VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 240 ++ +NQ+ + + G+ G A VRL +RR+ + ++ Sbjct: 253 VLCVNQVTDVVDGPNPGRCDYGLVGSKVLPALGIAWANQVMVRLMLRRLAGQVKSDSRSC 312 Query: 241 SETRVKVV 248 + +++VV Sbjct: 313 APRKLEVV 320 >UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio RepID=B8J0Q7_DESDA Length = 458 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 34/231 (14%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ----VIAAAQREGKTCAFI 94 E +G +LD LG G +P G + + G GK+TL LQ V A G+ + Sbjct: 70 EPYGSGLQALDRVLGKGLVP-GAAILVGGEPGIGKSTLLLQVAGLVAAQMASAGRPVLYA 128 Query: 95 DAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 152 E +L I A +LG+ NLL E +E +A ++VVDSV LT Sbjct: 129 SGEESLPQIKGRAERLGMLDPNLLALATSRVEDVVEAANA----QNPALLVVDSVQTLTS 184 Query: 153 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG 212 E EG G+ R ++ + L ++ LI + + K GV+ G Sbjct: 185 -LEAEGLPGNVS---QVRAVATS---LLELCRRLGCTLILVGHV-TKDGVLAGPRLLEHM 236 Query: 213 GNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 + + R + R+ ++V KN+ + F++ Sbjct: 237 VDTVISLEGDRRQMFRL---------------LRVFKNRFGPNEELLVFRM 272 >UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus marinus RepID=A8G2D8_PROM2 Length = 453 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 18/222 (8%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 + E S + ++G +D LG G +P G +V + G GK+T+ LQ A Sbjct: 57 IPFNEISSKKISRFTSGFKEIDRVLGGGIVP-GSVVLLGGEPGIGKSTIVLQ-SAGKISL 114 Query: 88 GKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 + ++ AE +L+ I +L D + L E L + +S ++D Sbjct: 115 NEKVLYVTAEESLEQVKIRWERLNQDSNELKIF----AETNLSLIMEEIKSVNPSFAIID 170 Query: 146 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205 S+ A+ S + + +L K +N L+ I + K G + G Sbjct: 171 SIQAIHNHEMESSPGSVSQVRACS-------SELQNLAKNNNISLLIIGHV-TKDGALAG 222 Query: 206 NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 + + + ++ R+ ++ +N GS + + Sbjct: 223 PKTLEHLVDVVINFEGDKVSSHRL--LRSIKNRFGSTFEIGI 262 >UniRef50_C2BP13 Putative uncharacterized protein (Fragment) n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 RepID=C2BP13_9CORY Length = 102 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 46/62 (74%) Query: 267 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 EGI+ ++DLGV+ I K+G+W++Y+G+++GQGK A +LKDNP+ A EIE+K+ + Sbjct: 1 EGISRESSIIDLGVENGFIRKSGSWFTYEGDQLGQGKEKARNFLKDNPDLANEIEQKIFQ 60 Query: 327 LL 328 L Sbjct: 61 KL 62 >UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinobacteria (class) RepID=RADA_MYCBO Length = 480 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 74/198 (37%), Gaps = 18/198 (9%) Query: 42 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 101 TG LD LG G +P G + + G GK+TL L+V + G+ ++ E + Sbjct: 71 PTGIDELDRVLGGGIVP-GSVTLLAGDPGVGKSTLLLEVAHRWAQSGRRALYVSGEESAG 129 Query: 102 PIYARK----LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIE 157 I R G +++ + + L+ + + +++VDSV + +E + Sbjct: 130 QIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETV----QPALVIVDSVQTM-STSEAD 184 Query: 158 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 217 G G + L K + LI + + K G + G + + Sbjct: 185 GVTGGVT------QVRAVTAALTAAAKANEVALILVGHV-TKDGAIAGPRSLEHLVDVVL 237 Query: 218 FYASVRL-DIRRIGAVKE 234 + R +R + VK Sbjct: 238 HFEGDRNGALRMVRGVKN 255 >UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicutes RepID=RADA_BACSU Length = 458 Score = 80.9 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 81/233 (34%), Gaps = 24/233 (10%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 N++ A + ++ ++K SI E + T + LG GG+ G +V I Sbjct: 44 NRRAAFSHSVQTVQKPSPITSIETSEE------PRVKTQLGEFNRVLG-GGVVKGSLVLI 96 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD---T 122 G GK+TL LQV A + +I E ++ R D L + P Sbjct: 97 GGDPGIGKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRA-----DRLGINNPSLHVL 151 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 E +E + + +VVDS+ + S + + +L Sbjct: 152 SETDMEYISSAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQV-------RECTAELMKI 204 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD-IRRIGAVKE 234 K + + + K G + G + + ++ R R + AVK Sbjct: 205 AKTKGIPIFIVGHV-TKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKN 256 >UniRef50_C5M7H8 Putative uncharacterized protein n=2 Tax=Candida RepID=C5M7H8_CANTT Length = 518 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 52/223 (23%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC--AFIDA 96 E I+TG ++D LG GG+P+G + E++G GK+ Q++A +++ I Sbjct: 83 EFINTGLPNIDTELG-GGIPLGEVTEVFGASGCGKSHFLFQLLANCRKQYPMSENVHIST 141 Query: 97 EHALDPIYARKL-----GVDIDNLLCSQPD---TGEQALEICDALA---RSGAVDVIVVD 145 E L+ + D+D++ + + L L +G ++V+D Sbjct: 142 ESFLETKRLKDFLGSNKKSDLDSISYIHCQDLESQDHILYTQLPLKLSQNNGKTKLVVID 201 Query: 146 SVAALTPKAE--------------IEGEIGDSHM--GLAARMMS---------------- 173 S+A + + E E+ D M + R +S Sbjct: 202 SIAQHFRREDSIMNSTYLKQKIESQESELADDKMFENIKRRQVSELKKFNKSAKYASRTG 261 Query: 174 ------QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 + L+ + N ++ INQ+ + P Sbjct: 262 KLYYVCSLFQHLSRLAQVFNIAVVVINQVSDYPLIYDKGPIEA 304 >UniRef50_Q54QU4 AAA ATPase domain-containing protein n=1 Tax=Dictyostelium discoideum RepID=Q54QU4_DICDI Length = 564 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 74/223 (33%), Gaps = 54/223 (24%) Query: 26 SIMRLGEDRSMDVETI--STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 +M E + + +I STG +D LG G P+G I EI G SGKT L +Q+ Sbjct: 150 ELMTSLELEKLQISSIKLSTGCKIMDKCLGGGISPIG-ITEIAGESGSGKTQLCIQLSLQ 208 Query: 84 AQRE------GKTCAFIDAEHALDPIYARKL----------------------------- 108 Q C +I E ++ Sbjct: 209 VQLPFEMGGLNGACLYITTEPPFPTKRLNQMYTVKSGKNTNNNTNNNNNNNNGQQQQQQQ 268 Query: 109 --------GVD-IDNLLCSQPDTGEQALEICD----ALARSGAVDVIVVDSVAALTPKAE 155 GV +DN+ T + +++ + ++++DS+AAL Sbjct: 269 YYSKLSNSGVSPLDNIFIQSTTTIDSLMDLLINQITGYLEKKTIRLLIIDSIAALLRHEY 328 Query: 156 IEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 198 S + +++ +L +Q ++ +NQ+ Sbjct: 329 GN---EKSEIIEKTKLLWSLANRLKLINEQYGITIVVVNQVTD 368 >UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria RepID=Q0BVC8_GRABC Length = 460 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 11/208 (5%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 + + I+TG LD LG GGL G ++ + G GK+TL LQ AA R Sbjct: 56 LPASGADAAPPPRIATGIEELDRVLG-GGLVPGSVILVGGDPGIGKSTLMLQAAAALARA 114 Query: 88 GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV 147 G ++ E A++ + R + + + +G +I L + ++V+DS+ Sbjct: 115 GGRALYVSGEEAVEQVRLRARRLHLADAPLELAASG-HVRDIAATLETARDAALVVIDSI 173 Query: 148 AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 207 + + DS G A++ + +L K L+ + + K G + G Sbjct: 174 QTMW------LDSLDSAPGTVAQVRA-CGFELIRLAKSVGFALVLVGHV-TKEGAIAGPR 225 Query: 208 ETTTGGNALKFYASVR-LDIRRIGAVKE 234 +A+ ++ R R + VK Sbjct: 226 VLEHMVDAVLYFEGDRGHQFRILRGVKN 253 >UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilonproteobacteria RepID=RADA_HELPJ Length = 448 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 33/220 (15%) Query: 10 ALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 69 AL L Q++K + + E +V S+ LDI LG GG+ G + + G Sbjct: 46 ALKKPLPQVQKS------VSIAEIEHEEVIKFSSTQSELDIVLG-GGIAKGGLYLVGGSP 98 Query: 70 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEI 129 GK+TL L+V + + + ++ E +L I R ++ D E+ L + Sbjct: 99 GVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRA----------TRLDCIEEELYL 148 Query: 130 CDAL--------ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 + + S V+DS+ L S + R ++ +L Sbjct: 149 LNEINWPVIKANMESENYFACVIDSIQTLYSPEISSAPGSISQV----REIT---FELMR 201 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 221 K + + I I K G + G +++ ++ Sbjct: 202 LAKTRDIAIFIIGHI-TKEGSIAGPRVLEHMVDSVLYFEG 240 >UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7W6_9DELT Length = 447 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 29/252 (11%) Query: 23 GKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 82 G + LG + D T LD LG GGL G V + G GK+TL LQ+ Sbjct: 51 PSGVPVPLGSHPNEDFRPFPTAFSGLDRVLG-GGLTPGGAVLLGGEPGIGKSTLLLQLAG 109 Query: 83 AAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 140 A G+ ++ AE +L A +LGV + LL + A D L + A D Sbjct: 110 LAAVAGRRVVYLSAEESLPQLKARAERLGVLHEGLL---AASTTDAGAAVDVLGATPAPD 166 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 +++VDSV + A IEG G R ++ A K+ L+ + + K Sbjct: 167 LVIVDSVQTMH-MAGIEGAAGSVS---QVRSVAAAC---VEAAKRGQACLVLVGHV-TKE 218 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAE 260 G + G + + + R + RI ++V+KN+ + Sbjct: 219 GQIAGPKLLEHMVDTVLYLEGERRHLFRI---------------LRVLKNRYGPTDELLV 263 Query: 261 FQILYGEGINFY 272 ++ I Sbjct: 264 MEMREAGLIEVP 275 >UniRef50_Q6MQS4 RecA protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQS4_BDEBA Length = 240 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 25/199 (12%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 + TG LD L G+P G + + G +G T+L ++++ + K A+I+ Sbjct: 43 QPPPGLPTGVNVLDDFLLWKGVPQGDLSLLQGAPGTGATSLWIRIVQNVHSQNKWAAWIN 102 Query: 96 AEHALDPIYARKLGVDIDNLLCS-QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 154 + L P + +++ LL +P EQ + L S +VI Sbjct: 103 GDAQLFPAHLSSYKINLKKLLVVKEPKENEQLFWLLQELITSSLFEVI------------ 150 Query: 155 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 214 M L + ++KL + L+F+NQ K F NP + + Sbjct: 151 ----GCNLKEMFLK----NHQLQKLKRLCRLHKVALVFVNQKASK----FVNPLFSLMIH 198 Query: 215 ALKFYASVRLDIRRIGAVK 233 + + +++ + R Sbjct: 199 FQRDFITIQRALHRPTPFN 217 >UniRef50_Q977U1 RecA-like protein (Fragment) n=2 Tax=Thermoprotei RepID=Q977U1_SULAC Length = 198 Score = 79.8 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 10/101 (9%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 V +STG D L GG+P G V + G +GKT +L +A +EG C ++ E Sbjct: 1 VIRLSTGIYEFDK-LIEGGIPQGFFVALTGEPGTGKTIFSLHFVAQGLKEGNPCVYVTTE 59 Query: 98 HALDPIY--ARKLGVDIDNLLCSQPDTGEQALEICDALARS 136 + D I A++ G D + L ++ L I DAL + Sbjct: 60 ESRDSIVKQAKQFGWDFEEHL-------DKKLIIIDALMKE 93 >UniRef50_Q3JBH0 KaiC n=3 Tax=Chromatiales RepID=Q3JBH0_NITOC Length = 482 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 31/198 (15%) Query: 42 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 101 STG LD LG GGL G I I GP +GK+TL +A A +G+ A E +D Sbjct: 245 STGIEKLDKILG-GGLEAGTISLITGPSGTGKSTLASLFVAQAAAQGRKAAIYLFEEEID 303 Query: 102 P--IYARKLGVDIDNLL--------CSQP--DTGEQALEICDALARSGAVDVIVVDSVAA 149 A L +D+ N L +P ++ + V++IV+DS+A Sbjct: 304 ALLHRASSLSIDLKNPLREGQIKLEQVEPLRYLTDEFATLVSQEVEEEGVELIVLDSIAG 363 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 209 + E +A+ LA +L + ++ +N+I G Sbjct: 364 FELTLGGDEEA------------KRALHALAKSLSRRGASVLLVNEIEALTGQF------ 405 Query: 210 TTGGNALKFYASVRLDIR 227 G + + + + +R Sbjct: 406 KISGKGISYLSDNVIFLR 423 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 12/172 (6%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDA 96 E +STG +LD L GGL + G GKTTL L +AAA Q F + Sbjct: 6 ERVSTGLEALDHILS-GGLIKQSAYLVRGGPGQGKTTLGLHFLAAADGQSSPLFIGFQEP 64 Query: 97 EHALDPIYARKLGVDIDN--LLCSQPD----TGEQALEICDAL-ARSGAVDVIVVDSVAA 149 E L A +G+DI N L P+ T +Q+ ++ A + V+++V Sbjct: 65 EEQLRVN-AESVGIDISNFRFLSLTPEEHFFTEQQSYDVFAAADVEQEPLAKSVMETVER 123 Query: 150 LTPKAEIEGEIGD-SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 P + + + + ++ ++F +++ ++ Sbjct: 124 AIPTHVFVDSMTQLRFLSADVYQYRKQVLSFLRYFRERGATILFTSELSAEL 175 >UniRef50_A4S2Y8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S2Y8_OSTLU Length = 351 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 82/253 (32%), Gaps = 53/253 (20%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCA 92 + + +D ALG GGL +G + E+ G +GKT L L A+A Sbjct: 78 QYVPLVIEDVDKALG-GGLRVGAVTEVVGAAGAGKTQLCLAACASAAAPARVGGRDGGVI 136 Query: 93 FIDAEHALDPIYA---------------RKLGVDIDNLLCSQPDT---GEQALEICDALA 134 ++DAE + + P + + L+ + Sbjct: 137 YVDAERKFSGARLAEIAREKFPGAFEDEESVHALARRVHVVTPTSLTDLNKRLDALEEAI 196 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 V ++++DS+A L E G + + L + ++ ++ +N Sbjct: 197 IDHKVRLVIIDSIAHLA-----RAEFGREKVVQRQSALGAVASTLKRHAEKHALAVLAVN 251 Query: 195 QIRMKIGVMF-------------GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 Q+ KIG + T G + R+ + V+ Sbjct: 252 QVTTKIGTFARHASDGGDDVADESSGITAALGTKWAHCVNTRIAL----------EVLED 301 Query: 242 ETRVKVVKNKIAA 254 +K+VK+ +A Sbjct: 302 RRALKIVKSPLAP 314 >UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organisms RepID=RADA_SALTY Length = 460 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 16/200 (8%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 74 L G + +L + ++ STG D LG G +P G + I G +GK+ Sbjct: 51 LSGYAGSAGVSKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVP-GSAILIGGNPGAGKS 109 Query: 75 TLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDA 132 TL LQ + E ++ E +L + A +LG+ NL + EQ I + Sbjct: 110 TLLLQTLCK-LAEQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAEE 168 Query: 133 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 192 ++V+DS+ + + + A +++ K ++ Sbjct: 169 ----EQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRF-------AKTRGVAIVM 217 Query: 193 INQIRMKIGVMFGNPETTTG 212 + + K G + G Sbjct: 218 VGHV-TKDGSLAGPKVLEHC 236 >UniRef50_B2B0Y8 Predicted CDS Pa_3_7770 n=1 Tax=Podospora anserina RepID=B2B0Y8_PODAN Length = 500 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 31/194 (15%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFI 94 TIST LD+ALG GG+P G I EI G ++GKT L ++ A Q + +I Sbjct: 116 TISTLDPHLDLALG-GGIPTGHITEITGESAAGKTQFLLTLLLAVQLPPPHGLSRPALYI 174 Query: 95 DAEHALDPIYARKL--------------GVDIDNLLCSQPDTGEQALEIC-----DALAR 135 E L ++ +D ++ + E I +AR Sbjct: 175 STEAPLSTRRLSQMITENPLFSTLPRSARPTLDKIISTTTPDLESQDHILTYQAPVEIAR 234 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGD----SHMGLAARMMSQAMRKLAGNLKQSNTLLI 191 V ++++DSVAA +AE E + S+MG + + L ++ N ++ Sbjct: 235 RN-VGLLIIDSVAANY-RAEFERPTPNSNLSSNMGARTNELIKLGMHLKDLAEKYNLAVV 292 Query: 192 FINQIRMKIGVMFG 205 NQ+ + G Sbjct: 293 VSNQVADRFSGTGG 306 >UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJQ7_BDEBA Length = 463 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 72/207 (34%), Gaps = 16/207 (7%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 90 + ++ T L+ LG GGL G V + G GK+TL LQ+ Sbjct: 68 QRLEEVKLDRFDTSFEELNRVLG-GGLAKGSFVLLGGSPGIGKSTLLLQMAGGLANNKHK 126 Query: 91 CAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 148 +I E ++ A +LG+ + E L +AR DV+VVDS+ Sbjct: 127 VLYISGEESVSQTGSRAHRLGIRSPLIEVG----CESNLTAVMEMARFKKPDVLVVDSIQ 182 Query: 149 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE 208 + S + A L G K +I I + K G + G Sbjct: 183 TMFLPDLQAAPGSVSQVRECA-------GHLMGLAKHDGITVILIGHV-TKDGNIAGPKV 234 Query: 209 TTTGGN-ALKFYASVRLDIRRIGAVKE 234 + L F + + R + ++K Sbjct: 235 LEHMVDCVLSFDGDISYNFRLLRSLKN 261 >UniRef50_B5ISK3 KaiC domain protein n=5 Tax=Thermococcaceae RepID=B5ISK3_9EURY Length = 452 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 25/166 (15%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E ISTG LD L GG+ G I I G +GKTT L A +G+ +I E Sbjct: 235 EKISTGIKELDAIL-DGGVYRGSITLIVGMTGTGKTTFGLHFAIANALQGRKAIYISFEE 293 Query: 99 ALDPI--YARKLGVDIDNLL---------CSQPDTGEQALEICDALARSGAVDVIVVDSV 147 ++ + AR+ G+ +D +L + T + +V+V+DS+ Sbjct: 294 SVGQLKRAARRYGMPVDEVLDKTLKMFSWVPEAKTPVHTFLKIREIIDEHKPEVLVIDSL 353 Query: 148 AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 193 +L + + +R L+ +KQ Sbjct: 354 TSLREHMN-------------ETELEKMLRYLSLIIKQYGVATYIT 386 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 14/130 (10%) Query: 43 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALD 101 TG D + G P G ++ + G +GKT T +I + G+ +I + Sbjct: 3 TGIEFFDETIIREGFPEGSLIIVAGEPGTGKTIFTSTIIHNGLEKFGEKGMYISLSETKE 62 Query: 102 PIY--ARKLGVDIDN-----------LLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 148 Y ++LG+D + L+ PD E+ +E+ S IV+DS+ Sbjct: 63 DFYDEMKRLGMDFEKYEKSGLFRFMDLVTVTPDVIEKEIELIMKEILSFRPKRIVIDSIT 122 Query: 149 ALTPKAEIEG 158 ALT E Sbjct: 123 ALTQLLGTEK 132 >UniRef50_B6QPB3 Putative uncharacterized protein n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QPB3_PENMQ Length = 442 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 83/272 (30%), Gaps = 65/272 (23%) Query: 41 ISTGSLSLDIAL--GAG----GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCA 92 + TG LD AL G G+P G I EIYGP GKT +L + A G + Sbjct: 45 LPTGLDGLDDALCVTTGLLSSGIPRGSITEIYGPPGVGKTAFSLNIAAKVLTAGDDEKVI 104 Query: 93 FIDAEHALDPIYARKLGVD------------------------IDNLLCSQPDTGEQALE 128 +ID + R L + I ++ + + L Sbjct: 105 WIDTGSPIPKPRLRDLLISNIKSSTTTTTTTTEVDITNKLNDCITRVIHIRAHSLPHLLS 164 Query: 129 ICDALARSGAVD---VIVVDSVAA-----LTPKAEIEGEIGDSHMG-----------LAA 169 + + +IV+D+V+A E++ +G L A Sbjct: 165 LFTHPPPNFPPKGTSLIVIDTVSAPFQSYFPNATELKSRLGLRQQHPQQDPGSGPGPLQA 224 Query: 170 RM-------------MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT-GGNA 215 + S + K+ N +I +NQ KI G + Sbjct: 225 QAHQLQWLLNRKWNVTSDMINKITKFAATHNLAVIVLNQTHTKIKGQPRPTLYPALAGGS 284 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 + R+ + R + G +KV Sbjct: 285 WETCVQTRIVLYRDHPPSHLDTGHGGGRGMKV 316 >UniRef50_A1CPK9 DNA repair protein (Rad57), putative n=10 Tax=Trichocomaceae RepID=A1CPK9_ASPCL Length = 886 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 26/193 (13%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFI 94 IST +LD L GG+P+G + E+ G SGKT L ++ A Q GK +I Sbjct: 442 AISTLDPTLDELLN-GGVPVGYLTEVTGESGSGKTQFLLGLLLAVQLPEPRGLGKGAIYI 500 Query: 95 DAEHALDPIYARKLGVD--------------IDNLLCSQPDTGEQALEICDA----LARS 136 E AL +L ++N+L E I + Sbjct: 501 STEAALATSRLSQLLESHPYLSTLPEDRAPTLENILSINAMDLETQDHILNYQLPVAITR 560 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 V ++V+DS+ A + + + +++ + L N ++ NQ+ Sbjct: 561 YNVGLVVIDSITANYRAEHTSHNV--QGLSTRSSELAKLGQLLRNLATAHNIAIVVANQV 618 Query: 197 RMKIGVMFGNPET 209 + + NP Sbjct: 619 SDRFDPLETNPTL 631 >UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobacteria RepID=Q215U8_RHOPB Length = 503 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 29/233 (12%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 93 S +S+G LD G GG G ++ + G GK+TL Q + REG + Sbjct: 81 TSEQAPRLSSGLGELDRVTG-GGFVRGSVLLVGGDPGIGKSTLLTQATSLMAREGHRIVY 139 Query: 94 IDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 151 I E A+ + R +LG+ + + + E +I L+ +IV+DS+ + Sbjct: 140 ISGEEAVAQVRLRATRLGLADAAVQLAAETSVE---DIITTLSEGAVPRLIVIDSIQTMW 196 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 211 + + +A+ + + K+S +I + + K G + G Sbjct: 197 TDTVESAPGTVTQVRASAQALIRF-------AKKSGAAIILVGHV-TKDGQIAGPRVVEH 248 Query: 212 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 +A+ EGE ++ VKN+ + F++ Sbjct: 249 MVDAV--------------LSFEGEGSQQFRI-LRAVKNRFGPTDEIGVFEMT 286 >UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZI7_UNCTG Length = 455 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 16/208 (7%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 +++L + D T D +G G +P G ++ + G GK+TL L + + Sbjct: 55 SSEVLKLKDISVKDFSRYQTAIKEFDNMIGGGIVP-GSLILLGGAPGIGKSTLMLHISDS 113 Query: 84 AQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 141 G T +I E +L A +L V DN+ + + ++ + + Sbjct: 114 LSDRG-TVLYISGEESLSQVKARAERLKVKKDNIFLASETNLKNIIDAVNKI----DPKF 168 Query: 142 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 +V+DS+ + A + + K + + + + K G Sbjct: 169 LVIDSIQTTYHPDLSSAPGTVGQVRETAAELLRV-------AKSKSIAVFLLGHV-TKEG 220 Query: 202 VMFGNPETTTGGNALKFYASVRLDIRRI 229 + G + + ++ + R RI Sbjct: 221 DLAGPRVLEHIVDTVLYFENERRQTYRI 248 >UniRef50_B2DFU0 Rad57 protein n=2 Tax=Coprinopsis cinerea RepID=B2DFU0_COPCI Length = 470 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 31/187 (16%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTC 91 E +STG LD ALG GG+ G + EI G ++GK+ L LQ+ Q G C Sbjct: 78 EVLSTGDAYLDHALG-GGIRTGMVWEIVGESAAGKSQLALQLSLFVQNPPELGGIHGAAC 136 Query: 92 AFIDAEHALDPIYARKL----------GVDIDNLLCSQPDTGEQALEICDALAR------ 135 ++ L ++ D+ ++ + +T + L Sbjct: 137 -YLTTSSKLPTSRLSQMLQSNENLSKDSCDLAHVHTIRVNTTPMLTNVLMNLLPNFIQQQ 195 Query: 136 ---SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 192 S V ++V+D++A L E ++ + + ++ ++Q L + N ++ Sbjct: 196 QTTSHPVKLLVIDALAELFRSTE---KMSKTTLFDRSKELNQLALDLHALATRHNIAVVV 252 Query: 193 INQIRMK 199 +N++ + Sbjct: 253 LNEVIDR 259 >UniRef50_O29896 Putative uncharacterized protein n=2 Tax=Archaeoglobaceae RepID=O29896_ARCFU Length = 226 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 39/248 (15%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99 + TG LD LG GG+P G IV + G +GKTTL L I + G+ C I + Sbjct: 1 MLKTGIEGLDAILG-GGIPEGHIVAVVGQYGTGKTTLGLHFIYEGLKNGEACMIISFDED 59 Query: 100 LDPIY--ARKLGVDI----DNLLCSQPDTGE--QALEICD----ALARSGAVDVIVVDSV 147 + I A+ +G+D+ D + + + E ++LE + + RS V ++VDS+ Sbjct: 60 EESIIGDAKSVGMDLTAFGDKVHIVRLEASEVKKSLEKLESDLPEIVRSLGVSRMLVDSI 119 Query: 148 AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 207 + L + G M A RK+ LK++ I ++ P Sbjct: 120 SVLETLFDDAGRYS----------MLAAFRKM---LKENGITAIITSE------ADKYQP 160 Query: 208 ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE-TRVKVVKNKIAAPFKQAEFQILYG 266 T+ G L++ + ++ + + E +G E +++ VK+ ++ + I+ Sbjct: 161 NTSKYG-ILEYICDGMISLKVVRKSELDEPTLGLEVVKMRRVKHS-----RKPKPYIITD 214 Query: 267 EGINFYGE 274 GI Y E Sbjct: 215 SGIVVYEE 222 >UniRef50_B7Q095 RAD51C protein, putative n=1 Tax=Ixodes scapularis RepID=B7Q095_IXOSC Length = 315 Score = 78.2 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 79/233 (33%), Gaps = 38/233 (16%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 92 S +E I T S+D AL GG+ +I E+ G SGKT LQV A+ G + Sbjct: 64 QHSRTLEPIPTWIPSIDAAL-DGGIARRKITEVTGFPGSGKTQFCLQVAASNHFTGNSTV 122 Query: 93 FIDAEHALDPIYARKL---------------GVDIDNLLCSQP-DTGEQAL--------- 127 +ID + ++ GV C +P + E+ Sbjct: 123 YIDCKGGFTRTRFEQILDGIASKQRSRRREAGVCATPNFCFRPCSSWEELSALLSFLLLL 182 Query: 128 -EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 + A + +++VD + G + L +++ RKL + Sbjct: 183 PQQSLAANDDHPITLVIVDGF-------DFHLRHGVDDLPLRRKIVGCMTRKLVDVATKL 235 Query: 187 NTLLIFINQIRMKI---GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGE 236 + ++ N + MK G P G S R+ G V+E Sbjct: 236 DVAVLLTNHLSMKPTSAGSGTLKPA-PALGQTFGQDCSYRVTFGFKGHVREAT 287 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C3PGY9 Protein recA n=2887 Tax=root RepID=RECA_CORA7 336 6e-91 UniRef50_P65982 Protein recA n=985 Tax=cellular organisms RepID=... 332 1e-89 UniRef50_C8PSA2 Protein recA n=1 Tax=Treponema vincentii ATCC 35... 320 6e-86 UniRef50_C2F9G8 Protein recA n=1 Tax=Lactobacillus paracasei sub... 308 2e-82 UniRef50_Q39199 DNA repair protein recA homolog 1, chloroplastic... 307 5e-82 UniRef50_B0MMT9 Protein recA n=3 Tax=Bacteria RepID=B0MMT9_9FIRM 305 2e-81 UniRef50_B2S3T1 Protein recA n=947 Tax=cellular organisms RepID=... 303 5e-81 UniRef50_A8I670 Chloroplast RecA recombination protein n=3 Tax=C... 300 6e-80 UniRef50_C1E9Q3 RecA DNA recombinase n=3 Tax=Viridiplantae RepID... 299 9e-80 UniRef50_A3ZNU6 Protein recA n=4 Tax=Bacteria RepID=A3ZNU6_9PLAN 297 3e-79 UniRef50_A4PHN2 RecA n=1 Tax=Physcomitrella patens RepID=A4PHN2_... 297 4e-79 UniRef50_B5RLK6 Protein recA n=43 Tax=cellular organisms RepID=R... 297 5e-79 UniRef50_C1TRT4 Protein recA n=2 Tax=Synergistaceae RepID=C1TRT4... 293 5e-78 UniRef50_B5YLR6 Predicted protein n=1 Tax=Thalassiosira pseudona... 289 8e-77 UniRef50_Q8EVC7 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCPE 279 1e-73 UniRef50_B7FQ63 Chloroplast-targeted nuclear-encoded recombinase... 277 3e-73 UniRef50_C0R0F2 Protein recA n=3 Tax=Bacteria RepID=C0R0F2_BRAHW 275 1e-72 UniRef50_Q9ZUP2 DNA repair protein recA homolog 3, mitochondrial... 269 9e-71 UniRef50_Q6ASS3 DNA repair protein recA, putative n=2 Tax=cellul... 255 1e-66 UniRef50_B1AI69 Protein recA n=15 Tax=Ureaplasma RepID=RECA_UREP2 255 2e-66 UniRef50_D1IJ27 Whole genome shotgun sequence of line PN40024, s... 251 3e-65 UniRef50_Q59486 Protein recA, plasmid n=3 Tax=Lactococcus lactis... 247 3e-64 UniRef50_P47581 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCGE 244 4e-63 UniRef50_Q8RY99 DNA repair protein recA homolog 2, mitochondrial... 235 1e-60 UniRef50_Q3F0X4 RecA protein n=2 Tax=Bacillus thuringiensis RepI... 233 5e-60 UniRef50_B9EWE7 Putative uncharacterized protein n=3 Tax=Poaceae... 228 1e-58 UniRef50_A0MN30 RecA/RadA recombinase n=1 Tax=Thermus phage phiY... 228 3e-58 UniRef50_P35901 Mle recA intein n=1019 Tax=root RepID=RECA_MYCLE 213 7e-54 UniRef50_A7KV38 RecA n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7... 212 1e-53 UniRef50_A0A7C2 RecA recombinase n=1 Tax=Microcystis aeruginosa ... 207 6e-52 UniRef50_Q05FN0 Protein recA n=1 Tax=Candidatus Carsonella ruddi... 203 9e-51 UniRef50_C7F8K4 Recombination repair protein n=1 Tax=Bacillus ph... 187 6e-46 UniRef50_B9H9J7 Predicted protein n=1 Tax=Populus trichocarpa Re... 182 2e-44 UniRef50_A8ASX5 Gp141 n=3 Tax=unclassified SPO1-like viruses Rep... 178 4e-43 UniRef50_C7T573 Protein recA n=1 Tax=Pseudomonas putida RepID=C7... 176 9e-43 UniRef50_A8AB83 DNA repair and recombination protein radA n=16 T... 176 1e-42 UniRef50_C4Z5Y6 Protein recA n=1 Tax=Eubacterium eligens ATCC 27... 176 1e-42 UniRef50_C1KFR4 Putative recombinase A n=1 Tax=Lactobacillus pha... 175 3e-42 UniRef50_P37384 Meiotic recombination protein DMC1 homolog n=10 ... 170 7e-41 UniRef50_Q4Z9W4 ORF021 n=4 Tax=unclassified SPO1-like viruses Re... 169 2e-40 UniRef50_A4TT30 Recombinase n=19 Tax=Enterobacteriaceae RepID=A4... 167 4e-40 UniRef50_A4WN87 DNA repair and recombination protein radA n=17 T... 167 6e-40 UniRef50_B5LJG5 Gp193 n=9 Tax=unclassified Myoviridae RepID=B5LJ... 167 7e-40 UniRef50_Q8L1K7 Glutamine synthetase 1 (Fragment) n=8 Tax=Rhizob... 166 2e-39 UniRef50_Q39009 Meiotic recombination protein DMC1 homolog n=49 ... 165 2e-39 UniRef50_Q06609 DNA repair protein RAD51 homolog 1 n=385 Tax=Euk... 165 2e-39 UniRef50_Q5ULR1 Recombinase A n=1 Tax=Lactobacillus phage LP65 R... 164 4e-39 UniRef50_Q7Y594 UvsX RecA-like recombination protein n=3 Tax=unc... 163 1e-38 UniRef50_Q14565 Meiotic recombination protein DMC1/LIM15 homolog... 162 2e-38 UniRef50_Q4N2W2 DNA repair protein rad51, putative n=2 Tax=Eukar... 159 2e-37 UniRef50_A4YCN4 DNA repair and recombination protein radA n=12 T... 158 2e-37 UniRef50_O93748 DNA repair and recombination protein radA n=3 Ta... 158 3e-37 UniRef50_A4AAG4 RecA bacterial DNA recombination protein n=1 Tax... 157 5e-37 UniRef50_Q013L3 DNA repair protein RAD51/RHP55 (ISS) n=2 Tax=Chl... 156 1e-36 UniRef50_D2EF50 DNA repair and recombination protein RadA n=1 Ta... 155 2e-36 UniRef50_A7ATP8 Rad51 protein, putative n=1 Tax=Babesia bovis Re... 155 2e-36 UniRef50_C8XUF9 UvsX RecA-like recombination protein n=1 Tax=Shi... 155 3e-36 UniRef50_Q8IB05 Meiotic recombination protein dmc1-like protein ... 153 8e-36 UniRef50_UPI0001BCAEAD recA protein n=1 Tax=Fusobacterium period... 153 1e-35 UniRef50_Q02AB2 Protein recA n=1 Tax=Candidatus Solibacter usita... 153 1e-35 UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridi... 152 1e-35 UniRef50_Q95Q25 Protein Y43C5A.6a, confirmed by transcript evide... 152 2e-35 UniRef50_P25453 Meiotic recombination protein DMC1 n=38 Tax=Sacc... 152 2e-35 UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=... 152 2e-35 UniRef50_Q4UA75 DNA repair (Rad51 homologue) protein, putative n... 150 1e-34 UniRef50_Q8TVF0 RadA recombinase n=1 Tax=Methanopyrus kandleri R... 148 2e-34 UniRef50_P04529 Recombination and repair protein n=12 Tax=T4-lik... 148 2e-34 UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteri... 148 3e-34 UniRef50_C1FJ81 DMC1 DNA recombinase n=5 Tax=Chlorophyta RepID=C... 147 6e-34 UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum s... 147 7e-34 UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio ac... 147 7e-34 UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteri... 146 1e-33 UniRef50_Q5GQK3 RecA-like recombination protein n=6 Tax=root Rep... 146 1e-33 UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID... 144 4e-33 UniRef50_A2SR54 DNA repair and recombination protein radA n=31 T... 143 7e-33 UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicut... 143 9e-33 UniRef50_C1MTK4 Rad51 DNA recombinase 1 n=1 Tax=Micromonas pusil... 142 2e-32 UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain pr... 142 2e-32 UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus ... 142 2e-32 UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquifica... 142 2e-32 UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=... 141 3e-32 UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibac... 141 4e-32 UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae R... 140 8e-32 UniRef50_UPI0000D55904 PREDICTED: similar to Dmc1 homolog n=1 Ta... 140 9e-32 UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acet... 140 9e-32 UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickett... 140 1e-31 UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus Rep... 140 1e-31 UniRef50_Q0CWT1 Meiotic recombination protein DMC1 n=22 Tax=Dika... 139 1e-31 UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succ... 139 1e-31 UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae ... 138 3e-31 UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter ked... 138 4e-31 UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID... 137 5e-31 UniRef50_B0R636 DNA repair and recombination protein radB n=4 Ta... 137 5e-31 UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacte... 137 5e-31 UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium m... 137 8e-31 UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B... 136 1e-30 UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickett... 136 1e-30 UniRef50_A1RYZ3 Rad51-like protein n=1 Tax=Thermofilum pendens H... 136 1e-30 UniRef50_UPI00006CB33C hypothetical protein TTHERM_00459230 n=1 ... 135 2e-30 UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisu... 135 2e-30 UniRef50_Q5XDZ7 DNA repair protein radA homolog n=42 Tax=Bacteri... 135 3e-30 UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas w... 134 4e-30 UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vagi... 134 4e-30 UniRef50_B1X477 DNA repair protein RadA n=1 Tax=Paulinella chrom... 134 4e-30 UniRef50_Q3LW29 DNA recombination and repair protein n=1 Tax=Big... 133 7e-30 UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobac... 133 9e-30 UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponem... 133 1e-29 UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organ... 132 1e-29 UniRef50_Q8K8Q1 DNA repair protein radA homolog n=197 Tax=Bacter... 132 2e-29 UniRef50_A5UKT8 DNA repair and recombination protein radB n=4 Ta... 132 2e-29 UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C... 132 2e-29 UniRef50_B9L413 RecA protein n=1 Tax=Thermomicrobium roseum DSM ... 132 2e-29 UniRef50_UPI0001793527 PREDICTED: similar to X-ray repair comple... 132 2e-29 UniRef50_Q12U80 DNA repair and recombination protein radB n=8 Ta... 132 2e-29 UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius t... 131 3e-29 UniRef50_B5IA62 DNA repair and recombination protein RadB n=2 Ta... 131 4e-29 UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae ... 131 4e-29 UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales Re... 130 6e-29 UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus ... 130 7e-29 UniRef50_A8L2Z2 RecA domain protein n=1 Tax=Frankia sp. EAN1pec ... 130 8e-29 UniRef50_Q9PK96 DNA repair protein radA homolog n=20 Tax=Bacteri... 129 9e-29 UniRef50_A6R196 DNA repair protein RAD51 n=3 Tax=Eukaryota RepID... 129 1e-28 UniRef50_Q8SZF1 RE02671p n=28 Tax=Drosophila RepID=Q8SZF1_DROME 129 1e-28 UniRef50_B7KLK4 DNA repair protein radA n=14 Tax=Bacteria RepID=... 129 1e-28 UniRef50_O28184 DNA repair and recombination protein radB n=3 Ta... 129 2e-28 UniRef50_A8N2F5 Putative uncharacterized protein n=1 Tax=Coprino... 129 2e-28 UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candi... 129 2e-28 UniRef50_C0R005 DNA repair protein radA n=2 Tax=Brachyspira RepI... 128 3e-28 UniRef50_A0NCA9 AGAP003791-PA n=1 Tax=Anopheles gambiae RepID=A0... 128 3e-28 UniRef50_Q18FI4 DNA repair and recombination protein RadB n=2 Ta... 128 4e-28 UniRef50_UPI0000586FDE PREDICTED: similar to RAD51L2/RAD51C prot... 128 4e-28 UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobact... 127 5e-28 UniRef50_C1FDH7 Rad51 DNA recombinase 3 n=4 Tax=Mamiellales RepI... 127 6e-28 UniRef50_C8PQ08 DNA repair protein radA n=1 Tax=Treponema vincen... 127 6e-28 UniRef50_UPI0001C33601 DNA repair protein RadA n=1 Tax=cyanobact... 127 6e-28 UniRef50_B6HD82 Pc20g01450 protein n=1 Tax=Penicillium chrysogen... 126 8e-28 UniRef50_C6JJB8 DNA repair protein radA n=5 Tax=Fusobacteriaceae... 126 9e-28 UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termi... 126 1e-27 UniRef50_P74391 DNA repair protein radA homolog n=12 Tax=Bacteri... 126 1e-27 UniRef50_C6HX97 DNA repair protein radA n=1 Tax=Leptospirillum f... 126 1e-27 UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio Re... 126 1e-27 UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloac... 126 1e-27 UniRef50_B4SGR3 DNA repair protein radA n=9 Tax=Chlorobiaceae Re... 126 2e-27 UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilon... 126 2e-27 UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales... 125 2e-27 UniRef50_B7Q5G3 DNA repair protein RAD51/RHP55, putative n=1 Tax... 125 2e-27 UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga letti... 125 3e-27 UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Ta... 125 3e-27 UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinob... 124 3e-27 UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bac... 124 4e-27 UniRef50_D1ZY30 Whole genome shotgun sequence assembly, contig_3... 124 4e-27 UniRef50_O15315 DNA repair protein RAD51 homolog 2 n=30 Tax=Deut... 124 5e-27 UniRef50_UPI0000E48A98 PREDICTED: hypothetical protein n=2 Tax=S... 124 5e-27 UniRef50_C9JYJ0 Putative uncharacterized protein RAD51L1 n=1 Tax... 124 6e-27 UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria R... 124 6e-27 UniRef50_B9L030 DNA repair protein radA n=1 Tax=Thermomicrobium ... 123 7e-27 UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae R... 123 7e-27 UniRef50_D0NZ01 DNA repair and recombination protein radA, putat... 123 8e-27 UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C... 123 8e-27 UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B... 123 1e-26 UniRef50_Q8TWK1 RadA recombinase n=1 Tax=Methanopyrus kandleri R... 122 2e-26 UniRef50_UPI000180D2F5 PREDICTED: similar to Rad51 homolog c n=1... 122 2e-26 UniRef50_B0XK02 RAD51D n=2 Tax=Culicini RepID=B0XK02_CULQU 122 2e-26 UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Ta... 122 2e-26 UniRef50_Q94CQ8 P0660F12.22 protein n=1 Tax=Oryza sativa Japonic... 122 2e-26 UniRef50_A6STQ0 Putative uncharacterized protein n=1 Tax=Botryot... 122 2e-26 UniRef50_P73860 KaiC-like protein 1 n=35 Tax=cellular organisms ... 122 2e-26 UniRef50_Q2USE9 Predicted protein n=9 Tax=Trichocomaceae RepID=Q... 121 4e-26 UniRef50_C6A0N1 DNA repair and recombination protein radB n=9 Ta... 121 4e-26 UniRef50_Q7ZTX4 Zgc:56581 n=7 Tax=Euteleostomi RepID=Q7ZTX4_DANRE 121 5e-26 UniRef50_B5LBC4 RAD51D transcript variant delta 10 n=14 Tax=Eute... 121 5e-26 UniRef50_D1ALG8 DNA repair protein radA n=3 Tax=Fusobacteriaceae... 121 5e-26 UniRef50_C4J073 Putative uncharacterized protein n=1 Tax=Zea may... 121 5e-26 UniRef50_Q31N87 DNA repair protein radA n=18 Tax=Bacteria RepID=... 121 5e-26 UniRef50_Q18EU1 DNA repair and recombination protein radA n=165 ... 121 5e-26 UniRef50_B6UY45 Spindle B (Fragment) n=1 Tax=Drosophila melanoga... 121 5e-26 UniRef50_B6H3A8 Pc13g13180 protein n=1 Tax=Penicillium chrysogen... 121 5e-26 UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium ... 121 5e-26 UniRef50_C7NB45 DNA repair protein radA n=11 Tax=Fusobacteriacea... 121 5e-26 UniRef50_D2QF93 DNA repair protein RadA n=1 Tax=Spirosoma lingua... 120 6e-26 UniRef50_Q4RWF9 Chromosome undetermined SCAF14988, whole genome ... 120 6e-26 UniRef50_C5Z4B1 Putative uncharacterized protein Sb10g003620 n=1... 120 7e-26 UniRef50_D1BVG5 DNA repair protein radA n=6 Tax=Actinomycetales ... 120 7e-26 UniRef50_A3MXS9 Rad51-like protein n=6 Tax=Thermoproteaceae RepI... 120 7e-26 UniRef50_Q93YY9 RAD51C protein n=2 Tax=Chlamydomonas reinhardtii... 119 1e-25 UniRef50_B1C8K3 DNA repair protein radA n=1 Tax=Anaerofustis ste... 119 2e-25 UniRef50_O75771 DNA repair protein RAD51 homolog 4 n=32 Tax=Eute... 119 2e-25 UniRef50_C9DGK5 UvsX RecA-like recombination protein n=1 Tax=Def... 119 2e-25 UniRef50_A5FVJ6 DNA repair protein radA n=4 Tax=Bacteria RepID=A... 119 2e-25 UniRef50_Q8GXF0 DNA repair protein RAD51 homolog 3 n=15 Tax=Magn... 118 3e-25 UniRef50_D1V789 DNA repair protein radA n=1 Tax=Frankia sp. EuI1... 118 3e-25 UniRef50_D1P982 DNA repair protein radA n=1 Tax=Prevotella copri... 118 4e-25 UniRef50_D1B9H8 DNA repair protein radA n=1 Tax=Thermanaerovibri... 117 5e-25 UniRef50_A7NKT5 DNA repair protein radA n=6 Tax=Bacteria RepID=A... 117 5e-25 UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales... 117 6e-25 UniRef50_B9LPC6 DNA repair and recombination protein RadB n=7 Ta... 117 6e-25 UniRef50_B9RR28 DNA repair protein rad51, putative n=1 Tax=Ricin... 117 8e-25 UniRef50_B6JWI2 DNA repair and recombination protein radA n=1 Ta... 116 9e-25 UniRef50_UPI00005020FA similar to RAD51 homolog protein isoform ... 116 1e-24 UniRef50_Q5BL30 X-ray repair complementing defective repair in C... 116 1e-24 UniRef50_O27728 DNA repair and recombination protein radB n=1 Ta... 116 1e-24 UniRef50_UPI0001AF06D9 RecA-like recombinase n=1 Tax=Acinetobact... 116 1e-24 UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q... 116 1e-24 UniRef50_Q555F1 Putative uncharacterized protein n=1 Tax=Dictyos... 116 1e-24 UniRef50_B6Q8E5 DNA repair protein (Rad57), putative n=2 Tax=Tri... 116 2e-24 UniRef50_B5LW25 RAD51D protein n=4 Tax=BEP clade RepID=B5LW25_WHEAT 116 2e-24 UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp... 116 2e-24 UniRef50_B8DKJ9 DNA repair protein radA n=11 Tax=Desulfovibriona... 115 2e-24 UniRef50_C9SL37 DNA repair protein RAD57 n=4 Tax=Sordariomyceta ... 115 3e-24 UniRef50_C5KD76 Meiotic recombination protein DMC1, putative n=2... 114 3e-24 UniRef50_Q3AH17 DNA repair protein radA n=6 Tax=Chroococcales Re... 114 3e-24 UniRef50_B0WMV3 DNA-repair protein XRCC3 n=2 Tax=Culicini RepID=... 114 4e-24 UniRef50_UPI00019A9ED6 RAD51 homolog C n=1 Tax=Nasonia vitripenn... 114 6e-24 UniRef50_B4DMW6 cDNA FLJ56732, highly similar to Meiotic recombi... 113 1e-23 UniRef50_A5LPZ1 Recombinase A n=1 Tax=Streptococcus pneumoniae S... 113 1e-23 UniRef50_Q97B99 DNA repair and recombination protein radB n=3 Ta... 112 2e-23 UniRef50_Q76B91 Os06g0151600 protein n=6 Tax=Magnoliophyta RepID... 112 2e-23 UniRef50_Q54PJ7 DNA repair protein RAD51 homolog 3 n=1 Tax=Dicty... 112 2e-23 UniRef50_Q9LQQ2 DNA repair protein RAD51 homolog 4 n=5 Tax=Embry... 112 2e-23 UniRef50_A9BF42 Methylated-DNA--(Protein)-cysteine S-methyltrans... 112 2e-23 UniRef50_B7GAG1 Rad51 DNA recombination/repair protein n=1 Tax=P... 112 2e-23 UniRef50_B6QPB3 Putative uncharacterized protein n=1 Tax=Penicil... 112 2e-23 UniRef50_A4FYL0 DNA repair and recombination protein radB n=10 T... 111 4e-23 UniRef50_D1ZTD1 Putative RAD55 protein n=1 Tax=Sordaria macrospo... 111 4e-23 UniRef50_Q9SK02 DNA repair protein RAD51 homolog 2 n=7 Tax=Magno... 111 4e-23 UniRef50_Q13X95 DNA repair protein radA n=11 Tax=Proteobacteria ... 111 4e-23 UniRef50_UPI00005234FA PREDICTED: similar to RAD51-like 3 (S. ce... 111 4e-23 UniRef50_A9A126 RecA/RadA recombinase-like protein n=1 Tax=Nitro... 111 5e-23 UniRef50_O43502 DNA repair protein RAD51 homolog 3 n=37 Tax=Eute... 111 5e-23 UniRef50_UPI0001758334 PREDICTED: similar to GA17378-PA n=1 Tax=... 111 6e-23 UniRef50_Q6L2I8 DNA repair and recombination protein RadB n=1 Ta... 111 6e-23 UniRef50_B2ASB2 Predicted CDS Pa_1_22940 (Fragment) n=1 Tax=Podo... 110 7e-23 UniRef50_C4ZBA6 Putative uncharacterized protein n=11 Tax=Clostr... 110 8e-23 UniRef50_D1H4V0 Whole genome shotgun sequence of line PN40024, s... 110 8e-23 UniRef50_Q2Y821 DNA repair protein radA n=1 Tax=Nitrosospira mul... 109 1e-22 UniRef50_Q9UUL2 DNA repair protein rhp57 n=1 Tax=Schizosaccharom... 109 1e-22 UniRef50_Q0WVW9 DNA repair protein-like n=1 Tax=Arabidopsis thal... 109 2e-22 UniRef50_Q1IJA5 RecA/RadA recombinase-like n=1 Tax=Candidatus Ko... 109 2e-22 UniRef50_A9RTQ6 Predicted protein n=3 Tax=cellular organisms Rep... 109 2e-22 UniRef50_Q6BWA8 DEHA2B13024p n=2 Tax=Debaryomyces hansenii RepID... 108 3e-22 UniRef50_O43542 DNA repair protein XRCC3 n=19 Tax=Euteleostomi R... 108 3e-22 UniRef50_B6BU53 DNA repair protein radA n=1 Tax=beta proteobacte... 108 3e-22 UniRef50_D1H4Y9 Whole genome shotgun sequence of line PN40024, s... 108 3e-22 UniRef50_B2B0Y8 Predicted CDS Pa_3_7770 n=1 Tax=Podospora anseri... 108 3e-22 UniRef50_C7H3I1 Toprim domain protein n=16 Tax=Bacteria RepID=C7... 108 5e-22 UniRef50_B3QSF7 Putative circadian clock protein, KaiC n=1 Tax=C... 107 5e-22 UniRef50_Q9FKM5 DNA repair protein XRCC3 homolog n=17 Tax=Eukary... 107 6e-22 UniRef50_A1RY65 Rad51-like protein n=1 Tax=Thermofilum pendens H... 107 7e-22 Sequences not found previously or not previously below threshold: UniRef50_C2BUU2 DNA repair protein radA n=3 Tax=Mobiluncus RepID... 115 3e-24 UniRef50_UPI0001C1683A DNA repair protein RadA n=2 Tax=Nostocace... 114 3e-24 >UniRef50_C3PGY9 Protein recA n=2887 Tax=root RepID=RECA_CORA7 Length = 377 Score = 336 bits (862), Expect = 6e-91, Method: Composition-based stats. Identities = 210/347 (60%), Positives = 266/347 (76%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 +++QKAL AA+ IEK FGKG++MRLG+D ++ IS+G+ ++DIALG GG P GRIVE Sbjct: 14 DDRQKALDAAMAMIEKDFGKGAVMRLGDDDRPPIQAISSGNTAIDIALGVGGFPRGRIVE 73 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYGPESSGKTT+ L IA+AQ+ G AFIDAEHALDP YAR LGVD DNLL SQPDTGE Sbjct: 74 IYGPESSGKTTVALHAIASAQKTGGIAAFIDAEHALDPEYARLLGVDTDNLLVSQPDTGE 133 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QALEI D L RSGA+D+IV+DSVAALTPKAEIEGE+GDSH+GL AR+MSQA+RK+ G L Sbjct: 134 QALEIADMLVRSGAIDIIVIDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKMTGALY 193 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 S T IFINQ+R KIGVMFG+PETTTGG ALKFYASVR DIRRI +K+G++ +G+ T+ Sbjct: 194 NSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRCDIRRIQTLKDGQDAIGNRTK 253 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 +KVVKNK++ PFK AEF I+YGEGI+ ++DLGV+ I+K+G+W++Y+G+++GQGK Sbjct: 254 LKVVKNKVSPPFKIAEFDIMYGEGISRESSIIDLGVEHGFIKKSGSWFTYEGDQLGQGKE 313 Query: 305 NATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351 A +LKDNP+ A EIEKK+ L + + + Sbjct: 314 KARNFLKDNPDLADEIEKKIFVKLGVGAAAAEAGEDVAMDVPGADDP 360 >UniRef50_P65982 Protein recA n=985 Tax=cellular organisms RepID=RECA_TROW8 Length = 437 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 203/347 (58%), Positives = 255/347 (73%), Gaps = 2/347 (0%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 N+ +AL AL I++Q+GKG++MR+ + + ++ I TGS++LD ALG GGLP GRIVEI Sbjct: 8 NRTRALELALANIDRQYGKGAVMRMNDAQKAYIDVIPTGSIALDYALGVGGLPRGRIVEI 67 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPESSGKTTLTL IA+ QR G AFIDAEHALDP YA+KLGVDID LL SQPD+GEQ Sbjct: 68 YGPESSGKTTLTLHAIASVQRAGGIAAFIDAEHALDPEYAKKLGVDIDALLVSQPDSGEQ 127 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 ALEI D L RS A+D+IV+DSVAAL P+AE+EG++GD H+GL AR+MSQA+RK+ L Q Sbjct: 128 ALEISDMLIRSTAIDLIVIDSVAALVPRAELEGDMGDMHVGLQARLMSQALRKITSGLNQ 187 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245 + T IFINQ+R K+GV FG+PETT GG ALKFYASVRLDIRR+ +K+G VG+ TRV Sbjct: 188 TGTTAIFINQLREKVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNRTRV 247 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN 305 KVVKNK+A PFKQAEF +LYG GI+ L+D V +I+K+G+WY Y +++GQGK N Sbjct: 248 KVVKNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQLGQGKEN 307 Query: 306 ATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNED 352 A +L +N A EIE K+ LL N D D + T+ D Sbjct: 308 ARRFLLENKSVADEIENKIISLLGFRSNEFGDLP--DHDAAVRTSPD 352 >UniRef50_C8PSA2 Protein recA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSA2_9SPIO Length = 441 Score = 320 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 206/349 (59%), Positives = 266/349 (76%), Gaps = 2/349 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMD-VETISTGSLSLDIALGAGGLPMGRIV 63 + K KAL AA QIEK+FG+GS+M+LG +E I +GS+ LD ALG GG P GRI+ Sbjct: 18 DEKLKALEAARLQIEKEFGQGSLMKLGSKTEASGIEVIPSGSILLDEALGIGGYPRGRII 77 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 EI+GPESSGKTTL L V+A AQ+ G AF+DAEHALDP YA+KLGV+ID L +QPD G Sbjct: 78 EIFGPESSGKTTLALHVVAEAQKRGGIAAFVDAEHALDPQYAQKLGVNIDELWVAQPDAG 137 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQALEI + L RSGAVDVIVVDSVAALTP+AEI+GE+GDSHMGL AR+MSQA+RKL + Sbjct: 138 EQALEITENLVRSGAVDVIVVDSVAALTPQAEIDGEMGDSHMGLQARLMSQALRKLTAII 197 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV-KEGENVVGSE 242 +S +LIFINQIRMKIG+ +GNPETTTGGNALKFY+SVR+++R+ + K+ + G++ Sbjct: 198 SRSKCILIFINQIRMKIGIAYGNPETTTGGNALKFYSSVRIEVRKGEVLGKDEDEAWGNK 257 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 R+KVVKNK+A PF++ E +IL+G+GI+ YG L+D VK +LI+K GAWYSYK +KIGQG Sbjct: 258 VRIKVVKNKVAPPFRKVELEILFGKGISPYGSLLDCAVKYELIDKKGAWYSYKEDKIGQG 317 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351 NA +L+DNP+ A ++EK +R L N F++ + E A++ E Sbjct: 318 HDNAVKFLEDNPDVAIDLEKTLRARLFPNQKYVSSFAISNQESGADSGE 366 >UniRef50_C2F9G8 Protein recA n=1 Tax=Lactobacillus paracasei subsp. paracasei ATCC 25302 RepID=C2F9G8_LACPA Length = 423 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 183/345 (53%), Positives = 256/345 (74%), Gaps = 4/345 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++ L AL +I+K FG+G++M++G+ + V+ +STG LSLD+ALG GGLP GRIVE+ Sbjct: 44 DRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEV 103 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPES+GKTT+ LQ IA Q+ G A+IDAE+A+DP YA +LGV+ID+LL SQP++GEQ Sbjct: 104 YGPESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQ 163 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 LEI + L S AVD++V+DSVAAL PKAEIEG IGDSH+GL AR+MSQA+RK+AG++ Sbjct: 164 GLEIAEMLIESAAVDIVVIDSVAALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINN 223 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245 +NTL+IFINQ+R K+GVMFGNPE T GG ALKFYASVR++++R VK+G++VVG +++ Sbjct: 224 TNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKRGQQVKDGKDVVGFASKL 283 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKE----KLIEKAGAWYSYKGEKIGQ 301 KV KNK+A PFK E + +G GI ++++L + +I K+G+WY+Y E++GQ Sbjct: 284 KVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQ 343 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGV 346 G NA+ +L ++PE +KEIE+K+RE + D DD + Sbjct: 344 GLVNASHYLDEHPEISKEIEEKIREQVAPKKPEEADEKQDDKKDG 388 >UniRef50_Q39199 DNA repair protein recA homolog 1, chloroplastic n=148 Tax=cellular organisms RepID=RECAC_ARATH Length = 439 Score = 307 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 182/329 (55%), Positives = 240/329 (72%), Gaps = 3/329 (0%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++QKAL AA+ I FGKGS+ RLG VET S+G L+LD+ALG GGLP GR+VEI Sbjct: 82 DRQKALEAAMNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALG-GGLPKGRVVEI 140 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YGPESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVD++NL+ QPD GE Sbjct: 141 YGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEM 200 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 ALE D + RSGAVD+I VDSV+ALTP+AEIEGEIG MGL AR+MSQA+RK++GN + Sbjct: 201 ALETADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASK 260 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSET 243 + LIF+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR G +K +G+ +G Sbjct: 261 AGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRA 320 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 RV+V K+K++ P+KQAEF+I++GEG++ G ++D +++ K G+WYSY+ +++GQG+ Sbjct: 321 RVRVQKSKVSRPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGR 380 Query: 304 ANATAWLKDNPETAKEIEKKVRELLLSNP 332 A L++NP EIEKKVR L+L Sbjct: 381 EKALQHLRENPALQDEIEKKVRLLMLDGE 409 >UniRef50_B0MMT9 Protein recA n=3 Tax=Bacteria RepID=B0MMT9_9FIRM Length = 419 Score = 305 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 191/351 (54%), Positives = 258/351 (73%), Gaps = 4/351 (1%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGE--DRSMDVETISTGSLSLDIALGAGGLPMGRI 62 E K+KAL A+ QI K +G+G++M LG ++ +DVE++ TGS+ LD ALG GGLP GRI Sbjct: 20 EEKKKALDTAMEQIIKNYGQGAVMFLGGEGNKKLDVESVPTGSIGLDYALGIGGLPKGRI 79 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 +EIYGPES GKTT+TL IA Q+ G AFID EHALDP+YA+ LGVDID+L+ SQPDT Sbjct: 80 IEIYGPESGGKTTVTLHAIAETQKLGGMAAFIDVEHALDPVYAKSLGVDIDHLIVSQPDT 139 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 GEQALEI + LARSGA+D++V+DSVAA+ KAEI+GEIGDS +G+ AR+MS AMRKL Sbjct: 140 GEQALEIMETLARSGAIDIVVLDSVAAMVTKAEIDGEIGDSFVGVQARLMSAAMRKLTSV 199 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 + +SNT+ IFINQ+R KIGVM+GNPETT GG ALKFYASVR+++R+ + + ++G Sbjct: 200 ISKSNTVAIFINQVREKIGVMYGNPETTPGGRALKFYASVRIEVRKGEKIVDDGEIIGYT 259 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 T+ KVVKNK+A PFK+ +F +++GEGI+ GE++ +G + I+K+GAWYSY GE++GQG Sbjct: 260 TKCKVVKNKVAPPFKETQFDMIFGEGISRLGEIITMGEELGFIKKSGAWYSYNGERLGQG 319 Query: 303 KANATAWLKDNPETAKEIEKKVRELL--LSNPNSTPDFSVDDSEGVAETNE 351 K +LK+N + EIE K++E + L S D+++ E Sbjct: 320 KEKTKKFLKENDDLRLEIEGKIKENMSKLDMSASEDGEGTDNADTSESAAE 370 >UniRef50_B2S3T1 Protein recA n=947 Tax=cellular organisms RepID=RECA_TREPS Length = 407 Score = 303 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 195/336 (58%), Positives = 255/336 (75%), Gaps = 2/336 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIV 63 E K KAL AA QIEKQFG+GS+M+LG+D + VE I TG++ LD ALG GG P GRI+ Sbjct: 16 EEKMKALEAARLQIEKQFGQGSLMKLGKDDAVQGVEVIPTGNILLDEALGIGGYPRGRII 75 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 EI+GPESSGKTTL L +A AQ+ G AFIDAEHALDP YA+ LGV + +L SQPDTG Sbjct: 76 EIFGPESSGKTTLALHAVAEAQKRGGIAAFIDAEHALDPQYAKDLGVSVGDLWISQPDTG 135 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQALEI ++L RSGAVD+IVVDSVAALTP+AEI+G++GD+H+GL AR+MSQA+RKL + Sbjct: 136 EQALEIAESLVRSGAVDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLTSII 195 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG-ENVVGSE 242 +S LIFINQ+RMKIG+MFGNPETTTGG ALKFY+SVR+++R++ + G E G++ Sbjct: 196 NKSKCTLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEEAWGNK 255 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 R+++VKNK+A PF++ E +IL+G+G + + L+D VK+++IEK GAWY+Y+ EKIGQG Sbjct: 256 VRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEKKGAWYAYREEKIGQG 315 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDF 338 + NA +L+ N + EIE+ VR L F Sbjct: 316 RDNAVGFLQQNMDITLEIERAVRTKLFPKQAFISSF 351 >UniRef50_A8I670 Chloroplast RecA recombination protein n=3 Tax=Chlamydomonas reinhardtii RepID=A8I670_CHLRE Length = 415 Score = 300 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 164/331 (49%), Positives = 233/331 (70%), Gaps = 1/331 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + K K + +I ++FG GSIMRL + + ++ET +GSL+LD ALG GG P GRI+E Sbjct: 60 DTKAKLFNETVDRITRRFGDGSIMRLSDSVTANIETFPSGSLTLDAALG-GGYPRGRIIE 118 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 +YGPE+SGKTTL + A QR G T A+ID EHA D YA +LG++++N +QP TGE Sbjct: 119 VYGPEASGKTTLAMHACAEIQRLGGTVAYIDVEHAFDRTYAERLGINLNNFWYAQPMTGE 178 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +ALE+ D L RS D++V+DSVAAL P+AE+EG+IG +G AR++SQA+RKL+ + Sbjct: 179 EALEVMDELCRSNVCDLVVIDSVAALVPRAELEGDIGSVQIGSQARLLSQALRKLSASAS 238 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 +S T L FINQ+R KIGVMFGNPETT+GGNALK+Y+SVR+DIR+ + E + + R Sbjct: 239 KSKTTLFFINQLRNKIGVMFGNPETTSGGNALKYYSSVRIDIRKKETLSESDQAYANRVR 298 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 KVVKNK+A+P K+A F+I YG GI+F G L+D + K++ + GA+Y Y +++GQG+ Sbjct: 299 AKVVKNKVASPHKEALFEIYYGRGIDFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGRE 358 Query: 305 NATAWLKDNPETAKEIEKKVRELLLSNPNST 335 A L+++ E IE VR++L +NP++ Sbjct: 359 KVLAALREDAERTAAIEAAVRDVLRANPDAA 389 >UniRef50_C1E9Q3 RecA DNA recombinase n=3 Tax=Viridiplantae RepID=C1E9Q3_9CHLO Length = 515 Score = 299 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 180/333 (54%), Positives = 241/333 (72%), Gaps = 3/333 (0%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 +A+ + K+KAL LG+I+ FGKGSIM+LGE V T +G+++LDIALG GG+P G Sbjct: 124 IAVRDAKKKALDRVLGEIDANFGKGSIMKLGEASQAKVATFPSGAMTLDIALG-GGMPRG 182 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 RIVE+YGPESSGKTTL L +A Q+ G T A IDAEHA DP Y+++LG+D+D+++ QP Sbjct: 183 RIVEVYGPESSGKTTLALHAMAEMQKLGGTVALIDAEHAFDPEYSQRLGLDVDDVVVCQP 242 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 +TGE ALE+ D L RS AVD+IVVDSVAAL P++EIEGEIG +G AR+MSQA+RK+ Sbjct: 243 ETGEMALEVVDTLVRSSAVDLIVVDSVAALVPRSEIEGEIGMVQVGAHARLMSQALRKIN 302 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV--KEGENV 238 N ++ +IF+NQ+R K+GV++GNPE TTGGNALKFYASVRLDIRR + K G + Sbjct: 303 VNAAKAGVTIIFLNQLRSKVGVIYGNPEITTGGNALKFYASVRLDIRRKEVIRGKAGADD 362 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 298 G +VKV KNKIA P+K AEF +L+G GI+ G ++D + +I + GAWYSY E+ Sbjct: 363 EGVRVKVKVAKNKIAPPYKTAEFDMLFGRGISRDGCMLDAADELGVITRRGAWYSYGEER 422 Query: 299 IGQGKANATAWLKDNPETAKEIEKKVRELLLSN 331 +GQG+ A +L NPE K++E+ VR ++ Sbjct: 423 LGQGREKAAEFLDANPEIKKQVEEDVRRVVAER 455 >UniRef50_A3ZNU6 Protein recA n=4 Tax=Bacteria RepID=A3ZNU6_9PLAN Length = 392 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 183/314 (58%), Positives = 245/314 (78%), Gaps = 1/314 (0%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 L L QIEK FG+G+IM LG + ++ +E I TGS+SLD+ALG GLP GR++EI+GPES Sbjct: 48 LKTTLQQIEKSFGEGAIMPLGSNHAV-IEGIPTGSISLDLALGGKGLPRGRVIEIFGPES 106 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 130 SGKTTL L VIA AQ G AF+DAEHALDP +A+KLGV+++ LL SQP +GE+ L+I Sbjct: 107 SGKTTLALHVIAQAQAMGGIAAFVDAEHALDPSWAKKLGVELETLLVSQPSSGEEGLQIT 166 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + L +S AVDVIVVDSVAAL PKAE+ GEIG SH+GL AR+MSQAMRKL G + +S T++ Sbjct: 167 EMLVKSNAVDVIVVDSVAALVPKAELNGEIGASHVGLQARLMSQAMRKLTGVISKSKTIV 226 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 IFINQIR K+GVMFG+PETT GG ALKFY S R+D+RRIG +K+GE+VVG R K+VKN Sbjct: 227 IFINQIREKVGVMFGSPETTPGGRALKFYCSCRVDVRRIGQLKDGEDVVGQRVRCKIVKN 286 Query: 251 KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWL 310 K+A PF+ AEF +++ GI++ G+++DL ++ K++ ++GAW+ Y ++GQGK A A+L Sbjct: 287 KVAPPFRIAEFDMMHSNGISYEGDILDLAIEAKIVARSGAWFRYGDIQLGQGKEKARAFL 346 Query: 311 KDNPETAKEIEKKV 324 +NP +E+++KV Sbjct: 347 MENPAMTEELKQKV 360 >UniRef50_A4PHN2 RecA n=1 Tax=Physcomitrella patens RepID=A4PHN2_PHYPA Length = 435 Score = 297 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 173/351 (49%), Positives = 236/351 (67%), Gaps = 7/351 (1%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 KQ + AA+ QI K+ GK ++M LG + ++ + TGSL+LDIALG GGLP GR+VEI+ Sbjct: 77 KQSLIQAAIDQIAKKHGKETVMWLGRESRDFIDVVPTGSLNLDIALGVGGLPKGRVVEIF 136 Query: 67 GPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 G E+SGKTT+ L VIA AQ+ GK C F+DAEHALD +A +GV+ +LL QPD EQ Sbjct: 137 GQEASGKTTIALHVIAQAQKMGKGHCLFVDAEHALDMQFAEGIGVNTKDLLFVQPDYAEQ 196 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 AL+ D RS VDVIVVDSVAAL PKAE+EG++GDS M L AR+MS+A+R+L +L Sbjct: 197 ALDTVDHFVRSTGVDVIVVDSVAALVPKAELEGDMGDSQMALQARLMSKALRRLTHSLNS 256 Query: 186 SNTLLIFINQIRMKIGVMFG---NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 SN LLIFINQ R K+ G E T GGNALKFYASVRL +R+ ++ G+ GS Sbjct: 257 SNCLLIFINQTRAKLNTYGGGGPTAEVTAGGNALKFYASVRLQVRKKEQLRRGDVPFGSS 316 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 VKVVKNK++ PF+ AEF I YG+GI+ GE++DLGVK L+ ++G+WYSY+G+ G Sbjct: 317 VIVKVVKNKVSPPFRTAEFDIEYGKGISRDGEVLDLGVKHGLLGQSGSWYSYEGKNFANG 376 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF 353 + A +L+++ + + ++E +L P ++ D D +G + + F Sbjct: 377 REGAKKYLQEHTDLTDALVVAIKEKILGQPRASGDL---DDDGFIQEEDAF 424 >UniRef50_B5RLK6 Protein recA n=43 Tax=cellular organisms RepID=RECA_BORDL Length = 363 Score = 297 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 187/348 (53%), Positives = 259/348 (74%), Gaps = 4/348 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVE 64 NK+KA+ A QIEK FGKGS++++GE +E+I +GS+ LD A+G GG P GR+VE Sbjct: 17 NKEKAIELARVQIEKDFGKGSLIKMGESPVGKYLESIPSGSILLDEAIGIGGYPRGRVVE 76 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 I+GPESSGKTTLTLQ IA Q+ G AFIDAEHALDP+YAR LGV+I+ L SQPDTGE Sbjct: 77 IFGPESSGKTTLTLQAIAEIQKTGGIAAFIDAEHALDPVYARALGVNINELWLSQPDTGE 136 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QAL+I + L RSG VD+IVVDSVAALTP+AEI+GE+GD+ +GL AR+MS+A+RK+ L Sbjct: 137 QALDIAEYLIRSGGVDLIVVDSVAALTPQAEIDGEMGDTQIGLQARLMSKALRKITAILS 196 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV--KEGENVVGSE 242 +SNT ++FINQIRMKIG++FG+PETTTGGNALKFY+S+RL++R++ V +NV+G++ Sbjct: 197 KSNTCIMFINQIRMKIGLVFGSPETTTGGNALKFYSSLRLEVRKVEQVIGSSSDNVIGNK 256 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 RVKVVKNK+A PF++AE + +G+GI+ ++D +K L++K+G+WY+ + +GQG Sbjct: 257 IRVKVVKNKVAPPFRKAELIVYFGKGISREASILDAAIKYNLVQKSGSWYAMGDDNLGQG 316 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETN 350 + N +L A E+E K+R+++ +P S +VD S+ Sbjct: 317 RENVIEYLFKEKALANELENKLRKIIFESP-SQDSLTVDISKSEENKE 363 >UniRef50_C1TRT4 Protein recA n=2 Tax=Synergistaceae RepID=C1TRT4_9BACT Length = 386 Score = 293 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 169/349 (48%), Positives = 239/349 (68%), Gaps = 8/349 (2%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 ++ L A+ I +FG GSIMRLG+D +VE I TG L LD+ALG GG P GRIVE+ Sbjct: 9 TREDILEVAIDDIRSKFGDGSIMRLGDDTLANVEVIPTGILPLDVALGIGGFPRGRIVEV 68 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 +GPE SGKTTL L +A AQ+ G AFIDAEHALDP A+ LGV++ +L +QPD+GEQ Sbjct: 69 FGPEGSGKTTLALHALAEAQKAGGVAAFIDAEHALDPRLAQSLGVNVADLYIAQPDSGEQ 128 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 AL I + L RSGAVD++VVDSVAALTP+AEI+G+IGD+ +GL AR+MS ++R+L + + Sbjct: 129 ALYILETLVRSGAVDIVVVDSVAALTPQAEIDGKIGDTQVGLQARLMSYSLRRLTSAISK 188 Query: 186 SNTLLIFINQIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 SN++++FINQ+R I G G ETTTGG ALKFY SVR++++R +V +G++ +G E Sbjct: 189 SNSIVVFINQLRATISTGYSRGPSETTTGGRALKFYTSVRVEVKRGKSVTKGDDTIGHEL 248 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 +KVVKNK A PF+ A ++YG+GI VD+ + +I++ G+W +YKGE +GQGK Sbjct: 249 WIKVVKNKQAPPFRTAHTTLVYGKGIPNNMSTVDMAIDAGVIKRKGSWLAYKGETLGQGK 308 Query: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNED 352 N +L+++P+ +EI K V + + D + +++ED Sbjct: 309 DNVANYLEEHPDLNEEIVKAVLD------EAAKGLGFDIGKDPKDSDED 351 >UniRef50_B5YLR6 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B5YLR6_THAPS Length = 428 Score = 289 bits (740), Expect = 8e-77, Method: Composition-based stats. Identities = 190/354 (53%), Positives = 249/354 (70%), Gaps = 6/354 (1%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 ++ K AL L +IE+ +G+GSI++LG+ M V+ I +GSL+LD+ALG GG P GR Sbjct: 64 GNNKAKLSALEGVLSRIERNYGRGSIVKLGDADRMVVDCIGSGSLTLDVALG-GGYPKGR 122 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 121 ++EIYGPESSGKTTL L +A AQ+ G AF+DAEHALDP YA LGVDID+LL SQPD Sbjct: 123 VIEIYGPESSGKTTLALHALAEAQQSGGIAAFVDAEHALDPAYAAALGVDIDSLLVSQPD 182 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 +GE AL+I D L RS AVDVIVVDSVAAL P+AE+EG++ D +GL AR+MS+A+RK+ Sbjct: 183 SGEMALDIVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDMQVGLQARLMSKALRKITS 242 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 +L S +IF+NQ+R K+GV++G+PE T+GGNALKFYASVRLD RR + + +G Sbjct: 243 SLSLSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRREVL---PDNMGI 299 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 +VKVVKNK+AAPFK E IL+GEGI+ G L+D + ++++ G+WYSY+ Q Sbjct: 300 RAKVKVVKNKVAAPFKVIELDILFGEGIDQMGCLLDAALDLDVVQRKGSWYSYQDSNFAQ 359 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSN--PNSTPDFSVDDSEGVAETNEDF 353 G+ NA+ +LK N E AK +EK+VRE LLS P D E E EDF Sbjct: 360 GRYNASVYLKGNAEVAKRMEKEVREALLSAKLPKGALGEGGGDVEDYVEMEEDF 413 >UniRef50_Q8EVC7 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCPE Length = 329 Score = 279 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 148/323 (45%), Positives = 215/323 (66%), Gaps = 3/323 (0%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 +QKAL A+ +IEK+FGK + + S D + I +GS+ LD A+G GG P G+I+EI Sbjct: 5 TEQKALELAIKEIEKKFGKETF---SQSESFDNQVIKSGSILLDNAIGVGGYPKGKIIEI 61 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 125 YG ESSGKTT+ LQ + +EG + A+IDAE ++D Y LG+D LL + P+ GEQ Sbjct: 62 YGNESSGKTTIALQCVKECIKEGGSVAYIDAECSIDSKYLSHLGIDPTKLLVATPEYGEQ 121 Query: 126 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 185 A I DAL ++ VD+IVVDSVAAL PK +IE + D MG ARMMS+ ++ L +L + Sbjct: 122 AFSIIDALIKTNMVDLIVVDSVAALVPKNDIESSMEDQSMGTHARMMSKGLKILQTSLSK 181 Query: 186 SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV 245 T +IFINQ+R KIGVMFGN E TTGG ALKF++++RLD+RR +K G +V+G +++ Sbjct: 182 HKTTVIFINQVREKIGVMFGNNEITTGGRALKFFSTLRLDVRRSELIKSGTDVIGIRSKI 241 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN 305 V KNK+A PFK I + +G + E++D ++ ++I+K+G+W+ Y K+ QG+ N Sbjct: 242 TVTKNKVAPPFKNCFVDIFFNKGFDPTKEIIDFAIEYEIIKKSGSWFYYNETKLAQGRNN 301 Query: 306 ATAWLKDNPETAKEIEKKVRELL 328 ++LK+N E EI+K V + + Sbjct: 302 LDSYLKENNEIYDEIKKLVFDEI 324 >UniRef50_B7FQ63 Chloroplast-targeted nuclear-encoded recombinase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQ63_PHATR Length = 431 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 182/349 (52%), Positives = 245/349 (70%), Gaps = 6/349 (1%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 +D K+ AL L QIE+ +G+GSI++LG+ +M V+TI +GSL+LD ALG GG P GR+ Sbjct: 75 MDPAKRAALDGVLNQIERNYGRGSIVKLGDADNMKVDTIGSGSLTLDAALG-GGFPKGRV 133 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 VEIYGPESSGKTTL L IA +Q+ G T AF+DAEHALDP YA KLGVDIDNLL SQPD+ Sbjct: 134 VEIYGPESSGKTTLALHAIAESQKVGGTAAFVDAEHALDPAYAAKLGVDIDNLLVSQPDS 193 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 GE AL++ D L RS AVDVIVVDSVAAL P+AE+EG++ D+ +GL AR+MS+AMRK+ G+ Sbjct: 194 GEMALDVVDQLVRSAAVDVIVVDSVAALVPRAELEGDMSDAQIGLQARLMSKAMRKITGS 253 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 L S +IF+NQ+R K+GV++G+PE T+GGNALKFYASVRLD RR + G Sbjct: 254 LALSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYASVRLDTRRKEIL---PENSGIR 310 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 +VKVVKNK+AAPFK +L+G GI+ G ++D + +IE+ G+W+SYKG+ + QG Sbjct: 311 VKVKVVKNKVAAPFKIVNLDLLFGSGIDQIGCMLDAAMDLNIIERRGSWFSYKGQNMAQG 370 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNE 351 + N +K + + ++E +VR L + D+E + + Sbjct: 371 RINVVEMIKSDTKLMAQLETEVRLALSEMGKDIKPTA--DTESLETLED 417 >UniRef50_C0R0F2 Protein recA n=3 Tax=Bacteria RepID=C0R0F2_BRAHW Length = 435 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 175/327 (53%), Positives = 241/327 (73%), Gaps = 3/327 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + K +A+ A QI K++G GS MRLG +++++V+ ISTG+L+LD ALG GG+P GRI+E Sbjct: 22 DGKSEAIEAITDQINKKYGPGSFMRLGSNKTVNVDVISTGALTLDHALGVGGVPRGRIIE 81 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYG E+SGKTTLTL +IA AQ+ G AFIDAEHALDP+YA LGVDIDNL SQP++GE Sbjct: 82 IYGHEASGKTTLTLHIIAEAQKAGGYAAFIDAEHALDPVYASALGVDIDNLYISQPNSGE 141 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +ALEI + + S A D++VVDSVAAL KAE+ G+IGD+H+ L AR+MS A+RKL + Sbjct: 142 EALEILEKVVSSTAFDIVVVDSVAALVSKAELAGDIGDAHIALQARLMSHALRKLTAIIS 201 Query: 185 QSNTLLIFINQIRMKI---GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 +NT +IFINQ+R I G G ETTTGG ALKFY+SVRLDIRR +K+G++ +G Sbjct: 202 NTNTAVIFINQLRQNIATTGYGAGPTETTTGGKALKFYSSVRLDIRRTEWIKKGDDTIGH 261 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 + ++KVVKNK+++PFK +I++G+GI+ G L+DL ++ K+I ++GAW+ Y GE+I Q Sbjct: 262 KVKIKVVKNKLSSPFKVVNLEIIFGKGISSEGLLIDLAMEAKIITRSGAWFYYNGEQIAQ 321 Query: 302 GKANATAWLKDNPETAKEIEKKVRELL 328 GK L +P+ E+E ++RE L Sbjct: 322 GKEKVRELLASDPKMRMELEIQIRETL 348 >UniRef50_Q9ZUP2 DNA repair protein recA homolog 3, mitochondrial n=79 Tax=cellular organisms RepID=RECA3_ARATH Length = 430 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 184/335 (54%), Positives = 238/335 (71%), Gaps = 5/335 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVE 64 K+ AL AL QI FGKGSIM LG S +V STGS +LD+ALG GGLP GR+VE Sbjct: 57 KKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVE 116 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 IYGPE+SGKTTL L VIA AQ++G TC F+DAEHALD A+ +GV+ +NLL SQPD GE Sbjct: 117 IYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGE 176 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 QAL + D L RSG+VDVIVVDSVAAL PK E+EGE+GD+HM + AR+MSQA+RKL+ +L Sbjct: 177 QALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLS 236 Query: 185 QSNTLLIFINQIRMK---IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 S TLLIFINQ+R K G G E T GGNALKFYAS+RL+I+RIG +K+GE GS Sbjct: 237 LSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGS 296 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 + VK+VKNK+A PF+ A+F++ +G+GI E++DL +K K I K G +Y+ G+ Sbjct: 297 QVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNY-H 355 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 336 GK +LK N +E+ KK+++ L+++ + Sbjct: 356 GKEALKRFLKQNESDQEELMKKLQDKLIADEAADK 390 >UniRef50_Q6ASS3 DNA repair protein recA, putative n=2 Tax=cellular organisms RepID=Q6ASS3_ORYSJ Length = 395 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 154/347 (44%), Positives = 208/347 (59%), Gaps = 44/347 (12%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYG 67 QKAL AA+ I FGKGS+ RLG VET +G L+LD ALG GGLP GR+VE+YG Sbjct: 89 QKALDAAMNDINSSFGKGSVTRLGSAGGAFVETFPSGCLTLDFALG-GGLPKGRVVEVYG 147 Query: 68 PESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL 127 PESSGKTTL L IA Q+ G +DAEHA DP Y++ LGVDI+NL+ Sbjct: 148 PESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDIENLI----------- 196 Query: 128 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 187 GEIG MGL AR+MSQA+RK++GN ++ Sbjct: 197 ------------------------------GEIGMQQMGLQARLMSQALRKMSGNASKAG 226 Query: 188 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK--EGENVVGSETRV 245 L+F+NQIR KIGV +GNPE T+GG ALKF+ASVRL+IR IG +K +G+ VG + RV Sbjct: 227 CTLMFLNQIRYKIGVFYGNPEVTSGGIALKFFASVRLEIRPIGKIKSAKGDEDVGVKVRV 286 Query: 246 KVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN 305 +V K+K++ P+KQAEF+I++GEG++ G ++D +++ K G+WYSYK ++GQG+ Sbjct: 287 RVQKSKVSRPYKQAEFEIIFGEGVSKLGCVLDCAELMEVVAKKGSWYSYKEMRLGQGREK 346 Query: 306 ATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETNED 352 A +L+++P EIEK VR ++ + S E D Sbjct: 347 ALQYLRESPTICDEIEKAVRAMIPEGARHMSLLAFGRSSLTEEEQVD 393 >UniRef50_B1AI69 Protein recA n=15 Tax=Ureaplasma RepID=RECA_UREP2 Length = 334 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 128/314 (40%), Positives = 198/314 (63%) Query: 15 LGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 74 + +E +F K S E + + ISTGS+ +D G G+P+G+I EIYG ESSGKT Sbjct: 13 IATLETKFAKSSYFIADEIKDEKINAISTGSIHIDQITGINGIPVGKITEIYGNESSGKT 72 Query: 75 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 134 T+ LQ IA Q+ G T +D E + D YA+ L VD+ L+ +QP TGEQA ++ + L Sbjct: 73 TIALQTIAECQKTGGTVVLLDLEGSFDINYAKSLKVDLTKLIITQPQTGEQAFDMIETLI 132 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 ++ ++D+IV+DSVAA+ P++E + + ++ MG AR+MS+ +RK+ + +S T +IFIN Sbjct: 133 KTNSIDLIVIDSVAAMLPESEYQANMNEALMGAHARLMSKGLRKIQPLINKSKTAIIFIN 192 Query: 195 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 Q+R KI FGNPE TTGG ALKFYAS+R++ ++ +KEG N +G +T+V VKNK+A Sbjct: 193 QLREKINTFFGNPEMTTGGKALKFYASLRIETKKADLIKEGINKIGIKTKVTTVKNKLAP 252 Query: 255 PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP 314 P + I +G G ++ E++D ++ +++K G+W+ + KIGQG+ L N Sbjct: 253 PLQTCFIDIFFGSGFDYNNEIIDFAIQYGVLKKNGSWFYFNDNKIGQGREQLKNTLSKNN 312 Query: 315 ETAKEIEKKVRELL 328 E +I +K E + Sbjct: 313 ELFIQISEKTLEFV 326 >UniRef50_D1IJ27 Whole genome shotgun sequence of line PN40024, scaffold_252.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1IJ27_VITVI Length = 398 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 140/332 (42%), Positives = 205/332 (61%), Gaps = 5/332 (1%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMGRIV 63 K AL A+ ++ FG+ S++ L S ISTGSL LD+ALG GGLP GRIV Sbjct: 67 AEKDTALRLAISRLAGDFGRESMLSLQRFFVSRHAPVISTGSLKLDLALGIGGLPKGRIV 126 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 EIYG E+SGKTTL L +I AQ+ G CA++D E+A++P +A +GV++DNLL S PD+ Sbjct: 127 EIYGQEASGKTTLALHIIKEAQKLGGYCAYLDVENAMNPSFAESMGVNVDNLLISPPDSA 186 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 E L + + L +SG++DVIVVDSVAAL P+ E++ IG ++ + +++M+QA+RK+ +L Sbjct: 187 ENLLSMVNTLTKSGSMDVIVVDSVAALVPQHELDVVIGGTYQDVQSQIMAQALRKIHYSL 246 Query: 184 KQSNTLLIFINQIRMKIGVMFGN---PETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 240 +S TL+IF+NQ+R + G E T GGNAL+FYA+VRL + R G ++ + V G Sbjct: 247 CRSETLIIFVNQVRSSLKSSHGFGRLDEVTCGGNALRFYAAVRLRVMRTGLLRTEDKVTG 306 Query: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 300 V+VVKNK+A K+A+ I +G GI F E+++L + +I K G+ Y +GE Sbjct: 307 LGVCVQVVKNKLAHATKKADLGIQFGRGICFESEVLELACEHGVIWKEGSKYIIEGEAF- 365 Query: 301 QGKANATAWLKDNPETAKEIEKKVRELLLSNP 332 K A ++ N + I +R L Sbjct: 366 NNKQEAEQYMAQNSGVLERIVSFLRSHLFERE 397 >UniRef50_Q59486 Protein recA, plasmid n=3 Tax=Lactococcus lactis RepID=RECA2_LACLA Length = 341 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 135/324 (41%), Positives = 210/324 (64%), Gaps = 3/324 (0%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 E K+ A+ A IEK+FG +I+ S V+ + +G LSLD A+G GG P GR++E Sbjct: 18 EEKKLAILKATQSIEKKFGSNTILNEEGKASQHVQALPSGILSLDCAIGIGGYPKGRLIE 77 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 ++G ESSGKTT+ LQ +A Q+ G A+IDAE++LD YA LGV D+L+ +QPDTGE Sbjct: 78 LFGAESSGKTTVALQAVAETQKNGGYVAYIDAENSLDIEYAENLGVKSDSLIFAQPDTGE 137 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +A + + R+GA D+IVVDSVAALTP +EI+ G G A+MMS+ + +L G + Sbjct: 138 EAFYMINEFVRTGAFDLIVVDSVAALTPASEID---GVKMPGQQAKMMSEQLSQLVGKVN 194 Query: 185 QSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR 244 Q+ T++IFINQIR + +F N ETT GG+ALKFY+SVR++++ +K+G + +G +T Sbjct: 195 QTKTVIIFINQIRSTMSGLFLNKETTPGGSALKFYSSVRIEVKSGEKIKDGIDTIGKKTT 254 Query: 245 VKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKA 304 + VKNK+++P+K+ ++G+G + ++V ++ +++K G WYS+ G+K+G+G Sbjct: 255 LHTVKNKVSSPYKKPTVINIFGDGFSQEIDVVTTALQLGVVKKLGEWYSFNGQKLGRGIF 314 Query: 305 NATAWLKDNPETAKEIEKKVRELL 328 +L +P ++ RE L Sbjct: 315 GVKEYLSHHPSVFNALDNLTREAL 338 >UniRef50_P47581 Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCGE Length = 340 Score = 244 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 143/339 (42%), Positives = 215/339 (63%), Gaps = 6/339 (1%) Query: 6 NKQKALAAALGQIEKQFGKGSIMR----LGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 +++ + Q F + + + ++ ++ETISTGSL+LD ALG+GGLP+GR Sbjct: 2 AQKEIINKKNTQKNSSFIESNNLTSFDFFDAKKNSEIETISTGSLNLDEALGSGGLPLGR 61 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 121 IVE+YG ESSGKTT+ L +A+ Q+ GKT +IDAE ALD YA+ +G+D++ LL + P Sbjct: 62 IVELYGNESSGKTTIALNAVASFQKAGKTACYIDAEGALDLAYAKSIGIDLNKLLIAHPR 121 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 GE A + ++L ++ + +IV+DSVAAL PK E+EG I + +GL ARMMS+ +R++ Sbjct: 122 HGENAFALIESLIKTNKISLIVIDSVAALIPKQELEGTIEEQTIGLHARMMSKGLRRIQS 181 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG-ENVVG 240 L S T ++FINQ+R K GVMFGN E TTGG AL+FY+S+R++ +R+ +K+ N VG Sbjct: 182 ILPDSKTCVLFINQLREKPGVMFGNNEVTTGGKALRFYSSLRMEAKRVELLKDKFNNYVG 241 Query: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 300 +T+V V KNKIA PF A +I++ G E++DL +K ++ +AG YS+ E I Sbjct: 242 IKTKVMVSKNKIAKPFGVAILEIMFNRGFVHEHEVIDLALKFNVVVRAGNSYSFNNESIA 301 Query: 301 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFS 339 GK L + P ++I K++ L+N NS + Sbjct: 302 VGKEKLLNVLSEKPALFEQI-KELTVQQLANKNSFQQTA 339 >UniRef50_Q8RY99 DNA repair protein recA homolog 2, mitochondrial n=3 Tax=core eudicotyledons RepID=RECAM_ARATH Length = 389 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 139/331 (41%), Positives = 201/331 (60%), Gaps = 5/331 (1%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGE-DRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 K AL AL Q+ F K S + L R V ISTGSL+LD+ALG GGLP GR+V Sbjct: 60 AEKDTALHLALSQLSGDFDKDSKLSLQRFYRKRRVSVISTGSLNLDLALGVGGLPKGRMV 119 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 E+YG E+SGKTTL L +I AQ+ G CA++DAE+A+DP A +GV+ + LL S+P + Sbjct: 120 EVYGKEASGKTTLALHIIKEAQKLGGYCAYLDAENAMDPSLAESIGVNTEELLISRPSSA 179 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 E+ L I D L +SG+VDVIVVDSVAAL P+ E++ +G+ + +R+M+QA+RK+ ++ Sbjct: 180 EKMLNIVDVLTKSGSVDVIVVDSVAALAPQCELDAPVGERYRDTQSRIMTQALRKIHYSV 239 Query: 184 KQSNTLLIFINQIRMKIGVMFGNP---ETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 240 S TL++F+NQ+R + P E T GGNAL F+A++RL + R G +K + G Sbjct: 240 GYSQTLIVFLNQVRSHVKSNMHFPHAEEVTCGGNALPFHAAIRLKMIRTGLIKTANKISG 299 Query: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 300 V+VVKNK+A K++E I +G G E+++L + +I + G Y +GE I Sbjct: 300 LNVCVQVVKNKLAPGKKKSELGIHFGHGFYVEREVLELACEHGVILREGTSYFIEGEVI- 358 Query: 301 QGKANATAWLKDNPETAKEIEKKVRELLLSN 331 +GK A +L +N E + +R L Sbjct: 359 EGKDAAEKYLVENKEALDTVVAILRNQLFKM 389 >UniRef50_Q3F0X4 RecA protein n=2 Tax=Bacillus thuringiensis RepID=Q3F0X4_BACTI Length = 362 Score = 233 bits (595), Expect = 5e-60, Method: Composition-based stats. Identities = 131/358 (36%), Positives = 201/358 (56%), Gaps = 19/358 (5%) Query: 10 ALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 69 ++ + I KQ G+ +I + ++ S+GSL++D+ALG GG+ GRI+E +G Sbjct: 2 SIEKLMSTINKQLGEDTI-GYSVNTGPTIKLFSSGSLTMDLALG-GGVANGRIIEYFGNS 59 Query: 70 SSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 128 +GKTTL IA QR+ + AFID EHA++ A++ GVD+D L+ P T E A++ Sbjct: 60 MAGKTTLMFLHIAEVQRKNEGYVAFIDMEHAMNKELAQQYGVDLDKLIYVNPKTAENAVD 119 Query: 129 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 188 I D+L RSG V +I VDSV+A+ P +E MGL AR MS M+KL G + + Sbjct: 120 IADSLIRSGEVRLIAVDSVSAMVPTKIVESSAEQQTMGLLARFMSTTMQKLTGIAYEHDC 179 Query: 189 LLIFINQIRMKIG--VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 246 + FINQIR KIG G P TT+GG AL FYAS R+ ++ +K+G +++G ++K Sbjct: 180 TVGFINQIREKIGGFSPAGTPTTTSGGRALPFYASQRIQVKMGEYIKDGNDIIGHWVKIK 239 Query: 247 VVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ----- 301 VVKNKIA PFK+A F ++YG G++ E+ + + ++K G W E+ G+ Sbjct: 240 VVKNKIAIPFKEAAFPLIYGHGVDRIDEVAQVAILAGFVQKNGGWCRIIDEETGEIRQHK 299 Query: 302 -------GKANATAWLKDNPETAKEIEKKVRELLLSNPNST--PDFSVDDSEGVAETN 350 G+A A+L ++ + A E+E K+R + + P+ + D E + Sbjct: 300 GIELKFNGQAKLVAFLHEHKDLAAELEAKIRGVEVELPDGERVDEDGYGDMEVAPKPE 357 >UniRef50_B9EWE7 Putative uncharacterized protein n=3 Tax=Poaceae RepID=B9EWE7_ORYSJ Length = 392 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 132/331 (39%), Positives = 194/331 (58%), Gaps = 7/331 (2%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRS-MDVETISTGSLSLDIALGAGGLPMGRIVE 64 K+ L+ A+ Q+ F + S + L ISTGSL LDIALG GGLP GR+VE Sbjct: 64 EKESTLSVAVSQLASDFDRESNLCLERFSRTRRTPVISTGSLKLDIALGIGGLPKGRMVE 123 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE 124 ++G E+SGKTTL L V+ AQ++G CA+IDAE+A +P A +GV+++ LL +QPD+ E Sbjct: 124 LFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPDSAE 183 Query: 125 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 184 +L I + L G++DV+VVDSVAAL P+ E+EGEI + + +R+M++A+RK+ L Sbjct: 184 NSLSIVNTLV-GGSIDVVVVDSVAALIPRCELEGEIYMNSEDVQSRLMTRALRKIQHTLS 242 Query: 185 QSNTLLIFINQIRMKIGVMFGN---PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 +S TL+IF+NQ+R K+ E GGNAL FYA+VR+ R G Sbjct: 243 RSETLIIFVNQVRTKLSSNQTPGIFKEVACGGNALGFYAAVRMRTSRRELRYNEAQATGI 302 Query: 242 ETRVKVVKNKIAA-PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 300 V+++KNK+A K+A I +G+GI + E+++L +I K + Y GE + Sbjct: 303 GISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWINGEFL- 361 Query: 301 QGKANATAWLKDNPETAKEIEKKVRELLLSN 331 KA A +L++N A EI +R Sbjct: 362 PNKAEAEKFLRENAAVADEICGTMRRQFFER 392 >UniRef50_A0MN30 RecA/RadA recombinase n=1 Tax=Thermus phage phiYS40 RepID=A0MN30_9CAUD Length = 339 Score = 228 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 131/323 (40%), Positives = 200/323 (61%), Gaps = 12/323 (3%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + + K+F K I E + E +STG L++D+ALG GG+PMG+I+E+YG ES Sbjct: 6 IKQIISSYAKKFSKEEIYTGQELKQTKEEIVSTGILTVDLALGIGGIPMGKIIEVYGQES 65 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 130 SGKTT +L I+ Q+ K CAFIDAE++ DPI+A LGV++D LL + ++ E++LE Sbjct: 66 SGKTTFSLITISQMQKANKICAFIDAENSFDPIWAETLGVNLDELLLIEANSLEESLEKL 125 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + L G V +V DS+ A ++ + GDS +G+ AR++S A+ KL ++Q+ + Sbjct: 126 EFLINQG-VKYVVYDSIVAPPTVSQNNADYGDSLVGVRARILSMALSKLMPIIRQNKATI 184 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 +FINQIR KIGV +GNPETT GG ALKF++S+RL++R+ +K+ + +G E VKV KN Sbjct: 185 MFINQIREKIGV-YGNPETTPGGRALKFFSSLRLNMRK-KPIKDEDGEIGDEVHVKVEKN 242 Query: 251 KIAAPFKQAEFQILYG--EGINFYGELVDLGVKEKLIEKAGAWY---SYKGEKIGQGKAN 305 K A P ++A+F + Y I++ L LG L++K+GAWY EK G Sbjct: 243 KFAPPMRKAKFLLFYDGSYTIDYPEILSQLG----LVKKSGAWYKEQITGEEKTFHGAIQ 298 Query: 306 ATAWLKDNPETAKEIEKKVRELL 328 +K+N A+ +++K+RE + Sbjct: 299 LIEEIKNNKPFAELVDQKIREKI 321 >UniRef50_P35901 Mle recA intein n=1019 Tax=root RepID=RECA_MYCLE Length = 711 Score = 213 bits (542), Expect = 7e-54, Method: Composition-based stats. Identities = 134/205 (65%), Positives = 164/205 (80%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 MA +++KAL A+ QIEK +GKGS+MRLG++ + I TGS++LD+ALG GGLP G Sbjct: 1 MAQVPDREKALELAMAQIEKNYGKGSVMRLGDEMCQPISVIPTGSIALDVALGIGGLPRG 60 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 RIVEIYGPESSGKTT+ L +A AQ G AFIDAEHAL+P YA+KLGVD D+LL SQP Sbjct: 61 RIVEIYGPESSGKTTVALHAVANAQAVGGVAAFIDAEHALEPEYAKKLGVDTDSLLVSQP 120 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 DTGEQALEI D L RSGA+D++V+DSVAAL P+AE+EGE+GDS++GL AR+MSQA+RK+ Sbjct: 121 DTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSYVGLQARLMSQALRKMT 180 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFG 205 G L S T IFINQ+R KIGVMFG Sbjct: 181 GALSNSGTTAIFINQLREKIGVMFG 205 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 9/261 (3%) Query: 70 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEI 129 SG+ + + + R D + R++G +L A Sbjct: 440 GSGRIEICVDAMTEGTRVRLRDYLCDTHGL--DVRLREVGSAGKAVLVFSTA----ATAK 493 Query: 130 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL-AGNLKQSNT 188 +L + + + + + + L + KL ++ + + Sbjct: 494 FQSLIAPYVAPSMEYKLLPQFRGRGSVTPQFVEPTQQLVPARVLDVHVKLSTRSMNRFDI 553 Query: 189 LLIFINQIRMKIGVMFGN-PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 + N GVM N PETTTGG ALKFYASVR+D+RRI +K+G + VG+ TRVK+ Sbjct: 554 -EVEGNHNYFVDGVMVHNSPETTTGGKALKFYASVRMDVRRIETLKDGVDAVGNRTRVKI 612 Query: 248 VKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANAT 307 VKNK++ PFKQAEF ILYG+GI+ G L+D+GV++ + K+G+W++Y+GE++GQGK NA Sbjct: 613 VKNKVSPPFKQAEFDILYGKGISREGSLIDMGVEQGFVRKSGSWFTYEGEQLGQGKENAR 672 Query: 308 AWLKDNPETAKEIEKKVRELL 328 +L +N + A EIEKK++E L Sbjct: 673 NFLLENADVANEIEKKIKEKL 693 >UniRef50_A7KV38 RecA n=1 Tax=Bacillus phage 0305phi8-36 RepID=A7KV38_9CAUD Length = 457 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 108/383 (28%), Positives = 188/383 (49%), Gaps = 38/383 (9%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 E K+K + I K G + + +D + + + T S ++ + GG+P GRI E Sbjct: 22 EEKRKIAMKLMDGINKTAG-STAVGFAKDVAKKLTFLPTPSEEIN-VMTGGGIPRGRITE 79 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAF--IDAEHALDPIYARKL-GVDIDNLLCSQPD 121 I+G SSGKT+L L+ I + + +++E + DP YAR + G+D+D L+ Sbjct: 80 IFGNNSSGKTSLCLETIGEDMEQDPDALWAWLESEESFDPDYARDVHGIDLDRLIYVDIS 139 Query: 122 T--GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179 E++++ + L RSG + VV+SVA L PK E+E ++ S + L ARMMS+ MRK Sbjct: 140 LKGAEESIDRLEVLMRSGILSGFVVNSVAGLVPKREVETDLAQSDIALQARMMSKLMRKW 199 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG--EN 237 + + + IFINQ+R + FG+P TTGG AL FYAS+R + ++ + Sbjct: 200 TALIGKKDLYAIFINQLRTDVNSRFGDPNVTTGGRALAFYASLRFGMNKLKLQDSDPITD 259 Query: 238 VVGSETRVKVVKNKIA--APFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYK 295 G + +V KN+ P+K+ E+ ++YGEG++ E+++ ++ K+G+W+ Y+ Sbjct: 260 DDGLKISARVAKNRCVYDNPYKKCEYYVIYGEGVDKLTEIMENVEPAGIMRKSGSWFYYE 319 Query: 296 GEKIGQ---------------------------GKANATAWLKDNPETAKEIEKKVRELL 328 E Q GK ++ DNP A+++ +++R + Sbjct: 320 KEDGEQIEAAEALVRKKDDPVPQMAKNVPLKFPGKTKFREFMTDNPWFAEQLRQEIRGKV 379 Query: 329 LSNPNSTPDFSVDDSEGVAETNE 351 D+ + + E + Sbjct: 380 KQGELLPKYQDADEMKDIEELEK 402 >UniRef50_A0A7C2 RecA recombinase n=1 Tax=Microcystis aeruginosa phage Ma-LMM01 RepID=A0A7C2_9CAUD Length = 354 Score = 207 bits (525), Expect = 6e-52, Method: Composition-based stats. Identities = 100/324 (30%), Positives = 167/324 (51%), Gaps = 18/324 (5%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 I +G SLD LG GG P+G+IVEI G S GKTTL Q ++ Q +G A++D Sbjct: 38 EPTTFIPSGIFSLDYVLG-GGWPVGKIVEIAGETSVGKTTLMKQCVSLLQAKGYMAAWLD 96 Query: 96 AEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 155 E + + YAR +G+ +D + +PDTGE+ ++ L SG V ++V+DSVA + E Sbjct: 97 HEKSFEVGYARMMGMQMDQIAMFRPDTGEEGMDSLITLLGSGLVKIVVIDSVANMISAVE 156 Query: 156 IEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNA 215 +E D+ + AR++S+ + ++ ++ ++ INQ R K+G +G P +TGG A Sbjct: 157 VEKGSADATVAQLARLLSKKLPQVVNAASKTGATVVLINQYRTKVGS-YGAPVGSTGGKA 215 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGE-------- 267 L + A+V+L + R +K+ + G VK KN++A PF++AE +L Sbjct: 216 LAYNAAVQLRLGRGDPLKQRGVITGMTITVKNTKNRVAIPFREAELDLLLPYTGPNGDLL 275 Query: 268 -GINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 G++ G++V VK ++ ++GA+Y+ QG A A + N I ++ E Sbjct: 276 AGVDLVGDIVRQAVKTGIVSRSGAFYTLPDGSKFQGLAAVRAGI--NQSVLDSIYSQLSE 333 Query: 327 LLLSNPNSTPDFSVDDSEGVAETN 350 + + + DD+E Sbjct: 334 Y-----DKQDNAAGDDTEETINDE 352 >UniRef50_Q05FN0 Protein recA n=1 Tax=Candidatus Carsonella ruddii PV RepID=Q05FN0_CARRP Length = 296 Score = 203 bits (515), Expect = 9e-51, Method: Composition-based stats. Identities = 120/293 (40%), Positives = 186/293 (63%), Gaps = 4/293 (1%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 +VE ISTGSL++D LG GGLP GRI+EIYG ESSGKTT +I AQ+ G CA+ID Sbjct: 8 KNVEFISTGSLNVDFILGIGGLPYGRIIEIYGQESSGKTTFAFSIIKEAQKVGDICAYID 67 Query: 96 AEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAE 155 EH +D Y LG+++ LL QP+ GE+ EI L S V +I++DS+AA+ P+ E Sbjct: 68 VEHCIDVNYIENLGINLKTLLIFQPENGEKVFEISQKLINSTYVKLIIIDSIAAIIPELE 127 Query: 156 IEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNA 215 I D+++G +R +S+ ++K+ L+++N LLI INQ+R+KI + N E +TGGNA Sbjct: 128 IYN--NDNNIGSHSRFLSKNLKKIIPLLRKNNVLLILINQVRIKISNFY-NKEISTGGNA 184 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 275 +KFY+S+R++++RIG +K N++G E +V V+KNK++ P++ + ++Y GI E+ Sbjct: 185 VKFYSSIRIELKRIGFLKSKNNIIGQEIKVNVLKNKLSKPYRDTKIYLIYSYGIYKILEI 244 Query: 276 VDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELL 328 ++ G+K LI+ + + E K N L N + K+IE +R ++ Sbjct: 245 INFGLKFNLIKIIKKKFFLENEYF-NNKKNLIKKLMFNKKLLKKIESDIRSMI 296 >UniRef50_C7F8K4 Recombination repair protein n=1 Tax=Bacillus phage Bcp1 RepID=C7F8K4_9CAUD Length = 407 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 103/385 (26%), Positives = 170/385 (44%), Gaps = 36/385 (9%) Query: 3 IDENKQKALAAA----LGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLP 58 + + K K A L G ++ D + + + +D G GGLP Sbjct: 1 MAKAKSKGKQATTGIDLDLSALNLSGGLVLLRDSDYAKVFDRLPLFLPKIDKIFG-GGLP 59 Query: 59 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCS 118 GR++E+ G S GK+T T V+ A G C ID E D LG+D +L Sbjct: 60 FGRMIEVAGVPSGGKSTFTHHVMRVATALGCICVLIDVEGTSDNERLTALGIDTSKVLVK 119 Query: 119 QPD--------------TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 164 QPD T E+ L++ V V V DSV + + E+E + G+ + Sbjct: 120 QPDPDKGTALTVEEVGQTVEETLKLFGEKYPHVPV-VYVWDSVGSTPSQVELEKDFGEQN 178 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-MFGNPETTTGGNALKFYASVR 223 +G A+ ++Q + K+ + QS +L I INQ+R IG GG A + A++R Sbjct: 179 VGARAKAITQFVTKVTPMVSQSKSLFIGINQVRDDIGGNPMFKTYKVPGGKAWEHAATLR 238 Query: 224 LDIRRIGAVKEG----ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLG 279 ++I+ GA+ +G + +G VK K+K++ PF++A +L GI++ LV +G Sbjct: 239 IEIKNRGAINKGSGVNKERLGHTMGVKTQKSKVSRPFQEATGSLLADTGIDYEYNLVTMG 298 Query: 280 VKEKLIEK-AGAWYSY---KGEKIGQGKANATAWLK--DNPETAKEIEKKVRELLLSN-- 331 + +I K + Y Y G Q +A+ WL+ + +EI K+ ++ + Sbjct: 299 DEAGIIGKPSNQSYEYVDQFGTVYKQNRASFIEWLRTPEAQPVRQEILNKLIQIEFPDGY 358 Query: 332 ---PNSTPDFSVDDSEGVAETNEDF 353 N T D S + V + +F Sbjct: 359 TALKNETLDISGWIDQVVPVISPEF 383 >UniRef50_B9H9J7 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9H9J7_POPTR Length = 335 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 114/332 (34%), Positives = 163/332 (49%), Gaps = 52/332 (15%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGED-RSMDVETISTGSLSLDIALGAGGLPMG 60 + K AL AL Q+ +FG+ S++ L S ISTGSL LD+ALG GGLP G Sbjct: 54 GEAKQKDNALRLALTQLAGEFGRESMLSLQRFFSSRRASIISTGSLKLDLALGIGGLPKG 113 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 R+VEIYG E+SGKTT+ L +I AQ+ G CAF+D E+A+D A+ +GV+ +NLL S+P Sbjct: 114 RMVEIYGQEASGKTTIALHIIKEAQKLGGYCAFLDVENAMDHSLAKSMGVNTENLLISRP 173 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 D E L + + L +SG+VDVI V + G + G A Sbjct: 174 DCAENLLSVVNTLTKSGSVDVI----VVDSVRTSLKSGRAEEVTCGGNA----------- 218 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 240 LKFY++VRL + R G +K G+ V G Sbjct: 219 -----------------------------------LKFYSAVRLRMIRTGLLKTGDKVTG 243 Query: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 300 +VVKNK+A +AE I +G G F E+++L ++ LI+K G+ Y G ++ Sbjct: 244 LGVCAQVVKNKLAPAMTKAEIGIQFGRGFCFESEVLELACEQSLIKKEGSSYVI-GREVF 302 Query: 301 QGKANATAWLKDNPETAKEIEKKVRELLLSNP 332 + A +L +N +I K+R LL Sbjct: 303 SNEHAAEQYLIENEGVLDQIVAKLRGKLLQRK 334 >UniRef50_A8ASX5 Gp141 n=3 Tax=unclassified SPO1-like viruses RepID=A8ASX5_BPA51 Length = 414 Score = 178 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 37/341 (10%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 + + T LD LG GG+P GR+ EI G +SGK+TL + + A + +ID E Sbjct: 35 SDKLPTFIPQLDYILG-GGIPFGRLTEIMGKNASGKSTLAVHLTKVALQLDCKVIWIDTE 93 Query: 98 HALDPIYARKLGVDIDNLLCSQP-----------------DTGEQALEICDALARSGAVD 140 DP +LGVD++ + QP E+ I +A + S Sbjct: 94 GTADPSRLSQLGVDVNKIFFVQPKKSKNAEVNKEDSITVEFVAERVEAILNAFSSSEQRI 153 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 VI+ DS+ EIE + G+ A+ M+Q +A + +S+ I INQ R ++ Sbjct: 154 VIIWDSIGHTPSIKEIEQGVAGKQPGIKAKAMAQFATIIAPMVTKSHCAFIGINQARDEM 213 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE---------GENVVGSETRVKVVKNK 251 G MFG ++ GGNAL +AS+RL++++ ++E VG + RV K+K Sbjct: 214 GSMFGAVDSP-GGNALHHWASLRLEVKQASKIEEPMQNAFGTMDNVYVGHKLRVITKKSK 272 Query: 252 IAAPFKQAEFQILYGEGINFYGELVDLGVKEKL--IEKAGAWYSYKGEKIGQGKANATAW 309 ++ P + AE +L G+ + + V K+ + K + SY + + K W Sbjct: 273 VSTPRQSAEMFLLSASGLQYEENIYRSCVDSKMYGLIKGLQYKSYIADDGKEYKMYGKDW 332 Query: 310 L-----KDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEG 345 + KD + KE+ +K+ +L+S P + + Sbjct: 333 VPFLQSKDGEKIRKELFQKM--MLISFPTGYSPLDNEVVDV 371 >UniRef50_C7T573 Protein recA n=1 Tax=Pseudomonas putida RepID=C7T573_PSEPU Length = 247 Score = 176 bits (446), Expect = 9e-43, Method: Composition-based stats. Identities = 122/163 (74%), Positives = 139/163 (85%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 ++E + KAL AALGQIEKQFGKG++MR+GE + ISTGS+ LDIALG GGLP GRI Sbjct: 1 MNEQRNKALQAALGQIEKQFGKGAVMRMGEHERQAIPAISTGSMGLDIALGIGGLPKGRI 60 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122 VEIYGPESSGKTTLTL VIA AQR+G TCAF+DAEHALDP YA KLGV++D+LL SQPDT Sbjct: 61 VEIYGPESSGKTTLTLSVIAEAQRQGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDT 120 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHM 165 GEQALEI D L RS AVDVI+VDSVAAL PKAEIEGE+GD+H+ Sbjct: 121 GEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGDAHV 163 >UniRef50_A8AB83 DNA repair and recombination protein radA n=16 Tax=Archaea RepID=RADA_IGNH4 Length = 327 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 116/290 (40%), Gaps = 40/290 (13%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 QK + AA ++ +F ++L M++ I+TGS +LD LG GG+ I E Sbjct: 56 TAQKIIRAARQMLDIRFRTAKEVKLE---RMNLRKITTGSKNLDDLLG-GGIETKTITEF 111 Query: 66 YGPESSGKTTLTLQVIAAAQRE--------GKTC---AFIDAEHALDPIYARKL----GV 110 +G SGK+ L Q Q G ++D E ++ G+ Sbjct: 112 FGEFGSGKSQLCHQASVNVQLPLEQGGLSEGDKVAKAVYVDTEGTFRWERIEQMAKCLGL 171 Query: 111 D----IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTPKAEIEGEIGDS 163 D +DN+ + + + I + L V +IVVDSV + G Sbjct: 172 DPDQVMDNIYYIRAVNSDHQMAIVEELFNLVPKENVKLIVVDSVTSHFRAEYP----GRE 227 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVR 223 ++ + + +++ + +L + NT +I NQ+ + V +G+P GG+ L VR Sbjct: 228 NLAVRQQKLNKHLHQLGKLAEVYNTAVIITNQVMARPDVFYGDPTQAVGGHVLYHAPGVR 287 Query: 224 LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 273 + +++ G++ +VV + P +A F I + Sbjct: 288 VQLKKAR---------GNKRIARVV-DAPHLPEAEAVFAITDCGIRDPED 327 >UniRef50_C4Z5Y6 Protein recA n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z5Y6_EUBE2 Length = 336 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 21/334 (6%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + + ++ K++ I + + +E I S ++ L GG+P+GRI+E+ G Sbjct: 4 IDNLIAEVNKKYKTDIIRKASDL--KGIEFIPYTSPMMNY-LTRGGVPVGRIIELVGLPQ 60 Query: 71 SGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT--GEQA 126 SGKTT L +I+ Q++ K C ++DAE+ +D + LGVD ++ QP++ GE+ Sbjct: 61 SGKTTTALDIISNFQKKYTDKYCVYLDAENTIDKEWGETLGVDWSKVILIQPESEYGEEL 120 Query: 127 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 L++ RSG + + V+DS + PKA E + + G + +M K K+ Sbjct: 121 LDMLLDYIRSGKIGLAVLDSAPFIIPKAVQEKGLDEKSYGGNSALMKAFCDKAVPLCKKV 180 Query: 187 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE--------GENV 238 + INQ+R IG + + G A+ S L + + E N Sbjct: 181 ECTFLLINQLRENIGNPYKPFKIPCGT-AIAHACSQILWFTKGSLLDEKYKEVSSGYANP 239 Query: 239 VGSETRVKVVKNKIAAPFKQA-EFQILYGEGINFYGELVDLGVKEKLIEKAGAWY----S 293 G+ VKV KNK+ ++ + + Y G++ + +DL + +I +AGAW+ Sbjct: 240 SGNLVSVKVEKNKVTKNDRRLQTYTLNYSTGVDEIKDTLDLAIMLGIISQAGAWFKAILK 299 Query: 294 YKGEKIGQGKANATAWLKDNPETAKEIEKKVREL 327 E+ QG + ++ E + + K+V E Sbjct: 300 DGKEQKMQGFNGVQEFYYNDLEELEYLRKQVYEA 333 >UniRef50_C1KFR4 Putative recombinase A n=1 Tax=Lactobacillus phage Lb338-1 RepID=C1KFR4_9CAUD Length = 400 Score = 175 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 149/355 (41%), Gaps = 41/355 (11%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 + + T D +G GG+P GRI EIY PE GK+T + + A G ++DAE Sbjct: 35 DMLPTFIPQWDYIMG-GGIPFGRITEIYAPEQVGKSTFMIYLNRVASALGADTFWLDAEG 93 Query: 99 ALDPIYARKLGVDIDNLLCSQPD-------TGEQALEICDALA--------RSGAVDVIV 143 D +LGVD + PD EQ + + R +++ Sbjct: 94 TSDGDRMEELGVDPAHTFIYSPDKNNGESLNVEQVGATIENIINTYKDDESRKDTPLLVI 153 Query: 144 VDSVAALTPKAEIEGEIGDS-HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 202 DS+ +AE + G+ G A +++ +RK+ L+ N L+ INQ+R Sbjct: 154 WDSIGGTITQAEQNTDFGEEGQRGRQAAAVTKLVRKITPMLRDVNIALVAINQVRANQDA 213 Query: 203 M--FGNPETTTGGNALKFYASVRLDIRRIGAVKE------GENVVGSETRVKVVKNKIAA 254 M + GG ALK ++RL++ + +K + G +K+ K+K + Sbjct: 214 MNKYAPKTIAGGGEALKHADALRLELAKSTQIKGKYKGESDDTYEGHLITMKIDKSKQSR 273 Query: 255 PFKQAEFQILYG---------EGINFYGELVDLGVKEKLIEKAGAWYSYK---GEKIGQG 302 P ++A+ +L G GI++ + + LI+ +G + Y GE+I Sbjct: 274 PHQKAQAALLAGWLLKNNAYLNGIDYEYNMYMDAKELGLIKASGGYRKYTTLAGEEINAY 333 Query: 303 KANATAWLKDNPETAKEIEKKVRELLL--SNPN--STPDFSVDDSEGVAETNEDF 353 + + LKD+P KE+ + E + +P + + D GV E + F Sbjct: 334 EVDFLKRLKDDPNLTKELFIRSMETIWTEGHPRYLDNKNLNCDAWPGVKELRKYF 388 >UniRef50_P37384 Meiotic recombination protein DMC1 homolog n=10 Tax=Eukaryota RepID=DMC1_LILLO Length = 349 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 72/289 (24%), Positives = 116/289 (40%), Gaps = 38/289 (13%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E K K AA + + GS + L V I+TGS +LD LG GG+ Sbjct: 76 GLSEAKVDKICEAAEKLVNVGYITGSDVLLK---RKSVIRITTGSQALDELLG-GGIETL 131 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGV 110 +I E +G SGKT + + + Q A+ID E P A + G+ Sbjct: 132 QITEAFGEFRSGKTQIAHTLCVSTQLPVSMHGGNGKVAYIDTEGTFRPDRIVPIAERFGM 191 Query: 111 D----IDNLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTPKAEIEGEIGDS 163 D +DN++ ++ T E + AL +++VDSV AL G Sbjct: 192 DASAVLDNIIYARAYTYEHQYNLLLALAAKMSEEPFRLLIVDSVIALFRV----DFSGRG 247 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF--GNPETTTGGNALKFYAS 221 + + ++Q + +L ++ N + NQ+ G +P+ GG+ L A+ Sbjct: 248 ELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAAT 307 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 VRL +R+ E RV + + P +A FQI G + Sbjct: 308 VRLMLRKGK----------GEQRVCKIFDAPNLPESEAVFQITPGGVAD 346 >UniRef50_Q4Z9W4 ORF021 n=4 Tax=unclassified SPO1-like viruses RepID=Q4Z9W4_9CAUD Length = 418 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 95/341 (27%), Positives = 149/341 (43%), Gaps = 41/341 (12%) Query: 30 LGEDRSMDVE-TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 L + D++ I T D LG GG+P+GR+ E+YG SGK+T + + A + G Sbjct: 29 LSDTNRADIKNVIPTMVPQYDYILG-GGIPLGRLTEVYGLTGSGKSTFAVHLSRIATQLG 87 Query: 89 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQ----------PDTGEQALEICDALARSGA 138 +ID E D +LGVD+ L Q + EQ + + + Sbjct: 88 VITIWIDIEGTADNNRMEQLGVDVSKLFSIQSGEGRLKNTVELSVEQVGKELEYWIDTFN 147 Query: 139 ------VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 192 V + DS+ A + EI+G I + MGL A + + + L +NT LI Sbjct: 148 EKIPGVPIVFIWDSLGATRTQKEIDGGIDEKQMGLKASATQKVINAVTPKLNDTNTGLIV 207 Query: 193 INQIRMKIG-VMFGNPETTTGGNALKFYASVRLDIRRIGAVKE------GENVVGSETRV 245 INQ R + M+G+P +TGG A + AS+R+ + + +K+ + G R+ Sbjct: 208 INQARDDMNAGMYGDPIKSTGGRAFEHSASLRIKVHKASQLKQKSELTGKDEYHGHIMRI 267 Query: 246 KVVKNKIAAPFKQAEFQILYGE------------GINFYGELVDLGVKEKLIEKAGAWYS 293 + K+K++ P ++AE +L GI+ + V+ LI K GAW + Sbjct: 268 ETKKSKLSRPGQKAEADLLSDYMVGKEDDPILLNGIDLEHTVYKEAVERGLITK-GAWRN 326 Query: 294 Y---KGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSN 331 Y GE+I A LKDN E E+ +V N Sbjct: 327 YVTLNGEEIKLRDAEWVPVLKDNKELYLELFSRVYGEHFPN 367 >UniRef50_A4TT30 Recombinase n=19 Tax=Enterobacteriaceae RepID=A4TT30_YERPP Length = 358 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 42/338 (12%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA---GGLPMGRIVE 64 + ALA AL K+ G + I +G L+ A+ GG P GRIVE Sbjct: 5 KSALALALK---KKIGSNDEI------QKVSHWIDSGFPPLNKAISGRYDGGFPCGRIVE 55 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDID----NLLCSQP 120 ++GP S+GKT L + +AQ++ F+D E++ D A G++ D + QP Sbjct: 56 VFGPPSAGKTFLATAAMVSAQKQDGLAVFLDHENSFDVGLAVANGLNADEDDGQWVYKQP 115 Query: 121 DTGEQALEIC---------DALARSGAVDVIVVDSVAALTPKAEIE-------------G 158 DT E ++E+ + L A IV DS+A++ P ++ E Sbjct: 116 DTFEDSVELIGTILKLVRDEELIPETAPICIVADSLASMVPNSKAEKFDKMAEGTAKDKD 175 Query: 159 EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 218 ++ + AR S LA ++ N +IF+NQ+R KIGVMFG+P T+ GG++ KF Sbjct: 176 QLNMNDNTALARATSANFPTLALWARKYNACIIFLNQVRTKIGVMFGDPTTSPGGDSPKF 235 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG--EGINFYGELV 276 YASVR+ + +K+G+ +G + + +KNK+A PF + ++ + G++ LV Sbjct: 236 YASVRIRLGA-SVMKDGKEKIGQDVGAECIKNKVAPPFGKCSWKFYFDPTRGLDVIESLV 294 Query: 277 DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP 314 + ++E + K + G+K K+ ++ P Sbjct: 295 EYMLEEGYLPKNASGRVEIGDKRY-TKSQIVEMYREKP 331 >UniRef50_A4WN87 DNA repair and recombination protein radA n=17 Tax=Archaea RepID=RADA_PYRAR Length = 333 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 67/291 (23%), Positives = 119/291 (40%), Gaps = 42/291 (14%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGE--DRSMDVETISTGSLSLDIALGAGGLP 58 + +E + + +A + G S + E +R + ISTG SLD LG GG+ Sbjct: 64 IGNEERALQIIESARKML----GLHSFISALEVYERRKKIRRISTGVRSLDELLG-GGIE 118 Query: 59 MGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL---- 108 + E+ G SGKT L Q+ Q G +ID E+ P ++ Sbjct: 119 TRAVTEVVGEFGSGKTQLCHQLAVMVQLPEERGGLGAKAIYIDTENTFRPERIMQMARAR 178 Query: 109 GVDID----NLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTPKAEIEGEIG 161 G+D D N+ ++ + + + + + + + V +IVVDSV A G Sbjct: 179 GLDPDQALNNIFYARAYSSDHQMILVEHAKSIVKQHNVALIVVDSVIAHFRSEFP----G 234 Query: 162 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 221 ++ + +++ + L + ++ NQ+ + V FGNP GGN L A+ Sbjct: 235 RENLAERQQKLNKHVADLLRLADAYDVAVVITNQVMAQPDVFFGNPLRPAGGNILAHGAT 294 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVK--NKIAAPFKQAEFQILYGEGIN 270 RL +R+ S+ +++VK + P + F+I I+ Sbjct: 295 YRLWLRK------------SKENIRIVKIFDSPYHPEGEVSFRITEEGLID 333 >UniRef50_B5LJG5 Gp193 n=9 Tax=unclassified Myoviridae RepID=B5LJG5_9CAUD Length = 371 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 171/365 (46%), Gaps = 31/365 (8%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 L I K++G+G++MR E I +GS +LD A+G GGLP R +EI G E Sbjct: 5 QKLLDSINKKYGEGTMMRASEVPVHPA--IHSGSYALDYAIGIGGLPQDRTIEIGGGEGC 62 Query: 72 GKTTLTL----QVIAAAQREGKTCAFIDAEHALDPIYARKL----GVDIDNLLCSQPDTG 123 GKTTL L Q + EG++ +D EH L + R+L +D D +L +QPD Sbjct: 63 GKTTLALLAMVQFLTDPANEGRSALILDMEHKLTMSWVRELIGDELMDSDRVLYAQPDHI 122 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQA I L +G V ++ DS+ A ++ E + +G A+ + + + Sbjct: 123 EQATNIFVDLVSTGEVCYVLYDSIGGSAGMAVVQKEAEKAQVGGDAKAIGRLLNLANIYC 182 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR--------IGAVKEG 235 + L +FINQ R + T GG K+ +R+ ++ I + Sbjct: 183 SKYRCLGVFINQERDDMDGY--RRYMTPGGRKAKYMFILRIRLKASTKAEDKIIRKINGE 240 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQIL------YGEGINFYGELVDLGVKEKLIEKAG 289 E +G+ ++KN++AAPF+ A++ + +G GI+ E+V LG +I+ +G Sbjct: 241 ERQIGTLINATIMKNQLAAPFRSAKWNMYNVWTEEFGFGIDTTEEVVRLGTATGVIQGSG 300 Query: 290 AWYS---YKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGV 346 WY+ + G K+ QG A +K++P+ + ++ L + + + D+E Sbjct: 301 -WYTHPAFPGGKL-QGMKGIQAAVKEDPKLRDTLVSEILAALKGDEDLAASIAPIDTEAA 358 Query: 347 AETNE 351 ++ Sbjct: 359 EMMSQ 363 >UniRef50_Q8L1K7 Glutamine synthetase 1 (Fragment) n=8 Tax=Rhizobiales RepID=Q8L1K7_9RHIZ Length = 461 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 110/160 (68%), Positives = 133/160 (83%), Gaps = 5/160 (3%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 ++E +F G+ ++ +++ET+ TGSL LDIALG GGLP GRI+EIYGPESSGKTT Sbjct: 307 KRVEVRFPLGA-----NEQVVEIETVPTGSLGLDIALGVGGLPRGRIIEIYGPESSGKTT 361 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 135 L L +A AQ++G CAF+DAEHALDP+YARKLGVD++NLL SQPDTGEQALEICD L R Sbjct: 362 LALHTVAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEICDTLVR 421 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 SGA+DV+VVDSVAALTP+AEIEGE+GDS GL AR+MSQA Sbjct: 422 SGAIDVLVVDSVAALTPRAEIEGEMGDSLPGLQARLMSQA 461 >UniRef50_Q39009 Meiotic recombination protein DMC1 homolog n=49 Tax=Eukaryota RepID=DMC1_ARATH Length = 344 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 110/289 (38%), Gaps = 38/289 (13%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E K K AA + + GS + V I+TG +LD LG GG+ Sbjct: 71 GLSEAKVDKICEAAEKIVNFGYMTGS---DALIKRKSVVKITTGCQALDDLLG-GGIETS 126 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGV 110 I E +G SGKT L + Q A+ID E P A + G+ Sbjct: 127 AITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGM 186 Query: 111 D----IDNLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTPKAEIEGEIGDS 163 D +DN++ ++ T E + L +++VDS+ AL G Sbjct: 187 DPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRV----DFTGRG 242 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF--GNPETTTGGNALKFYAS 221 + + ++Q + +L ++ N + NQ+ G +P+ GG+ L A+ Sbjct: 243 ELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAAT 302 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 +RL R+ +TRV V + +A FQI G + Sbjct: 303 IRLLFRKGK----------GDTRVCKVYDAPNLAEAEASFQITQGGIAD 341 >UniRef50_Q06609 DNA repair protein RAD51 homolog 1 n=385 Tax=Eukaryota RepID=RAD51_HUMAN Length = 339 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 40/288 (13%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 + K LA A + F + R ++ I+TGS LD L GG+ G I Sbjct: 68 EAKADKILAEAAKLVPMGFTTATEFH---QRRSEIIQITTGSKELDKLL-QGGIETGSIT 123 Query: 64 EIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD-- 111 E++G +GKT + + Q +ID E P A + G+ Sbjct: 124 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 183 Query: 112 --IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTP-KAEIEGEIGDSHM 165 +DN+ ++ + ++ + +++VDS AL GE+ M Sbjct: 184 DVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQM 243 Query: 166 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFGNPETTTGGNALKFYASV 222 +++ +R L + ++ NQ+ ++ +P+ GGN + ++ Sbjct: 244 H-----LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTT 298 Query: 223 RLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 RL +R+ ETR+ + + P +A F I + Sbjct: 299 RLYLRKGR----------GETRICKIYDSPCLPEAEAMFAINADGVGD 336 >UniRef50_Q5ULR1 Recombinase A n=1 Tax=Lactobacillus phage LP65 RepID=Q5ULR1_9CAUD Length = 405 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 153/348 (43%), Gaps = 32/348 (9%) Query: 13 AALGQIEKQFGKGSIMRLGEDRSMDV-ETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 + + K G I + + V + I T +LD L +G GR+ E++G SS Sbjct: 7 DIMNSLSK--GDKRITKYSDTDQGRVKDYIPTLIPALDKNLVSGIPSSGRVTEVFGLPSS 64 Query: 72 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD---------- 121 GK+TL V+ A + + D E +D LGVD ++ P+ Sbjct: 65 GKSTLMGLVMKNALKMNVIPIYFDVEETMDSERLEGLGVDPSKVITVTPEINKDNTVTPL 124 Query: 122 TGEQALEICDALA------RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 E+ +A S + ++DSV K E + + +G A+ ++ Sbjct: 125 YIEEITNYIVNMAAKIHSQSSELTSMFIIDSVGFTQSKLEANTDSESATVGQQAKALAIM 184 Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP--ETTTGGNALKFYASVRLDIRRIGAVK 233 RK+ NL +N +LI +NQ R + + GG + + S RL I++ A+K Sbjct: 185 ARKVQANLSYNNGMLIGLNQGRDDMKAPNPKYAQTKSLGGKGWEHFTSSRLRIQKTTAIK 244 Query: 234 ---EGENVVGSETRVKVVKNKIAAPFKQAE-FQILYGEGINFYGELVDLGVKEKLIEKAG 289 +N VG +T+V VVK+K+ A ++L G + + GV E +I+ +G Sbjct: 245 MHNSDKNAVGFDTKVTVVKSKVGDNVTDAVTIKLLGARGFDRETNIFYGGVDEGIIKGSG 304 Query: 290 AWYSY---KGEKI-GQGKANATAWLK--DNPETAKEIEKKVRELLLSN 331 WY+Y GE+I QG + ++LK + ETA EI +KV + + Sbjct: 305 -WYTYVNDDGEQIKKQGWVDFVSYLKSDEGKETANEIWRKVALKVFPD 351 >UniRef50_Q7Y594 UvsX RecA-like recombination protein n=3 Tax=unclassified T4-like viruses RepID=Q7Y594_BPR69 Length = 390 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 73/365 (20%), Positives = 139/365 (38%), Gaps = 36/365 (9%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAG---GLPM 59 + + K + + A+ ++ K + ++ + T L+IALG GL Sbjct: 1 MSDLKSRLIKASTSKMTADLTKSKLFNNRDE-------VPTRIPMLNIALGGALNAGLQS 53 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYARKLGVDIDNLLC 117 G + P KT L ++AA ++ C F D+E Y R +GVD+D ++ Sbjct: 54 G-LTIFAAPSKHFKTLFGLTMVAAYMKKYKDAICLFYDSEFGASESYFRSMGVDLDRVVH 112 Query: 118 SQPDTGEQA---LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL--AARMM 172 + + EQ + G +I +DS+ K E E + + +G A+ + Sbjct: 113 TPIQSVEQLKVDMTNQLDAIERGDKVIIFIDSIGNTASKKETEDALNEKVVGDMSRAKAL 172 Query: 173 SQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 232 R + L + + IN M+IG ++ E GG + + A+ I + V Sbjct: 173 KSLFRIVTPYLTIKDIPCVAINHTAMEIGGLY-PKEIMGGGTGILYSANTVFFISK-RQV 230 Query: 233 KEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWY 292 KEG + G + +K K++ + + GI+ + L+++ + + K A + Sbjct: 231 KEGTELTGYDFTLKAEKSRTVKEKSTFPITVNFDGGIDPFSGLLEMATEIGFVVKPKAGW 290 Query: 293 S---YKGEKIGQGKANATAW-------------LKDNPETAKEIEKKVRELLLSNPNSTP 336 + E+ G+ +W L + IE K + +S+ Sbjct: 291 YAREFLDEETGEMIREEKSWRAKATDCVEFWGPLFKHKPFRDAIETKYKLGAISSIKEVD 350 Query: 337 DFSVD 341 D D Sbjct: 351 DAVND 355 >UniRef50_Q14565 Meiotic recombination protein DMC1/LIM15 homolog n=44 Tax=Eumetazoa RepID=DMC1_HUMAN Length = 340 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 116/292 (39%), Gaps = 41/292 (14%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E K K AA IE F ++ V I+TGS D LG GG+ Sbjct: 64 GLSEAKVDKIKEAANKLIEPGFLTAFEYS---EKRKMVFHITTGSQEFDKLLG-GGIESM 119 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHALDPIYAR----KLGV 110 I E +G +GKT L+ + AQ G FID E+ P R + V Sbjct: 120 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 179 Query: 111 D----IDNLLCSQPDTGEQALEICDALA-----RSGAVDVIVVDSVAALTPKAEIEGEIG 161 D +DN+L ++ T E +E+ D +A +G ++++DS+ AL G Sbjct: 180 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV----DFSG 235 Query: 162 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG---VMFGNPETTTGGNALKF 218 + + ++Q + +L ++ N + NQ+ G +P+ GG+ L Sbjct: 236 RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAH 295 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 ++ R+ +R+ E R+ + + P +A F I G + Sbjct: 296 ASTTRISLRKGR----------GELRIAKIYDSPEMPENEATFAITAGGIGD 337 >UniRef50_Q4N2W2 DNA repair protein rad51, putative n=2 Tax=Eukaryota RepID=Q4N2W2_THEPA Length = 343 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 111/295 (37%), Gaps = 41/295 (13%) Query: 2 AIDENKQKALAAALGQI-EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E K + AA ++ F G + ++ +TGS LD L GG+ G Sbjct: 68 GLSEQKVLKIKAACRELCHLGFCSGQDYL---EARGNLIKFTTGSAQLDKLL-QGGVETG 123 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGV 110 I EI G +GK+ L + Q C ++D+E P A++ G+ Sbjct: 124 SITEIIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGKCLWVDSEGTFRPERIVSIAKRFGL 183 Query: 111 D----IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTP-KAEIEGEIGD 162 +DN+ ++ + LE+ + +++VDS +L GE+ Sbjct: 184 SPSDCLDNVAYARAYNTDHQLELLVEASAMMAQTRFALLIVDSATSLYRSDYSGRGELAS 243 Query: 163 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG---VMFGNPETTTGGNALKFY 219 M L + +R L ++ NQ+ K+ FGN + GG+ + Sbjct: 244 RQMHLC-----KFLRALQRIADTFGVAVVITNQVVAKVDAMSTFFGNDKLPVGGHIIAHA 298 Query: 220 ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 + RL +R+ E+R+ + + P +A F I G +++ Sbjct: 299 SQTRLFLRQSK----------GESRICKIYDSPVLPEGEAVFAITDGGINDYHDR 343 >UniRef50_A4YCN4 DNA repair and recombination protein radA n=12 Tax=Sulfolobaceae RepID=RADA_METS5 Length = 324 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 114/286 (39%), Gaps = 36/286 (12%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 Q+ + A ++ +F + E V+ I+TGS +LD LG GG+ + E+ Sbjct: 57 TAQRIIKEARDALDIRFKTALEI---EQERASVKKITTGSQALDGLLG-GGIETRTMTEL 112 Query: 66 YGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL----GVD---- 111 +G SGKT + QV Q +ID E + + G++ Sbjct: 113 FGEFGSGKTQICHQVSVNVQLPPERGGLSGKALYIDTEGTFRTERIKAMASALGLEPKEV 172 Query: 112 IDNLLCSQPDTGEQALEICDAL----ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 167 + N++ + + + I + L A+ ++ ++VVDS+ + G ++ + Sbjct: 173 LQNIMSIRAINTDHQIAIVEELQDIIAKDNSIKLVVVDSITSHFRAEYS----GRENLAV 228 Query: 168 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR 227 + +++ + +L + + +I NQ+ + + +G+P GG+ L +R+ I+ Sbjct: 229 RQQKLNRHLHQLVRLAEIYDLAVIVTNQVMARPDMFYGDPTVAVGGHTLYHVPGIRVQIK 288 Query: 228 RIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 273 + G+ ++V + P + F I + Sbjct: 289 KSR---------GNRRIARMV-DAPHLPEGEVVFSITNTGIRDAEE 324 >UniRef50_O93748 DNA repair and recombination protein radA n=3 Tax=Thaumarchaeota RepID=RADA_CENSY Length = 398 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 62/294 (21%), Positives = 111/294 (37%), Gaps = 41/294 (13%) Query: 8 QKALAAALGQ------IEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 +K + A + I K F GS + R + I+TG+ +LD LG GG+ Sbjct: 53 EKIVTIARKRLAETGAITKDFASGSEIY---KRRQSIGMITTGTDALDALLG-GGIETQA 108 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD 111 I E++G SGKT + Q+ G +ID E P A+ +D Sbjct: 109 ITEVFGEFGSGKTQFCHTMCVTTQKPKEEGGLGGGVMYIDTEGTFRPERVVTIAKANNMD 168 Query: 112 ----IDNLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 164 +D ++ ++ + I + + + +I+ DS L +G Sbjct: 169 PAKLLDGIIVARAYNSSHQVLILEEAGKTIQEENIKLIISDSTTGLFRSEY----LGRGT 224 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 224 + + + + +R LA + N ++ NQ+ FG+P GGN + ++ R+ Sbjct: 225 LASRQQKLGRYIRLLARIAETYNCAVLATNQVSSSPDSFFGDPTRPVGGNVVGHASTYRI 284 Query: 225 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDL 278 R+ G K RV + + P +A F++ + L L Sbjct: 285 YFRKGGKNK----------RVAKIIDSPHHPASEAVFELGERGVQDTEEHLKQL 328 >UniRef50_A4AAG4 RecA bacterial DNA recombination protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4AAG4_9GAMM Length = 181 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 112/155 (72%), Positives = 130/155 (83%) Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 MRKL +KQ+N L+IFINQIRMKIGVMFG+PETTTGGNALKFY+SVRLDIRRIGAVKEG Sbjct: 1 MRKLTATIKQTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKEG 60 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYK 295 + VVG+ETRVKVVKNK+A PFKQAEFQI+YG GI E++D GVK LI+K+GAWY+YK Sbjct: 61 DEVVGNETRVKVVKNKVAPPFKQAEFQIMYGRGIYRTAEVIDWGVKLNLIDKSGAWYAYK 120 Query: 296 GEKIGQGKANATAWLKDNPETAKEIEKKVRELLLS 330 G+KIGQGKANA +L+DNP EIE +R LL Sbjct: 121 GDKIGQGKANAAKFLEDNPALGSEIEGLIRSQLLD 155 >UniRef50_Q013L3 DNA repair protein RAD51/RHP55 (ISS) n=2 Tax=Chlorophyta RepID=Q013L3_OSTTA Length = 420 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 105/280 (37%), Gaps = 40/280 (14%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 A + F +++ E DV I+TG +D L GG+ G + EIYG + Sbjct: 157 RGANNLVPGGFTTATMI---EAARKDVIMITTGCAKVDEML-QGGIESGSVTEIYGEFRT 212 Query: 72 GKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL--------GVDIDNLLC 117 GKT L + Q C +ID E P ++ G +DN+ Sbjct: 213 GKTQLMHTLAVTCQLPIEQGGGEGKCLYIDTEGTFRPQRLIQIAERFQMDPGPVLDNVAY 272 Query: 118 SQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTP-KAEIEGEIGDSHMGLAARMMS 173 ++ E E+ A + ++++DSV L + E GE+ M + Sbjct: 273 AKAHNTEHQTELLVAAAGMMAETRFALMIIDSVTNLYRTEYEGRGELSARQMH-----LG 327 Query: 174 QAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFGNPETTTGGNALKFYASVRLDIRRIG 230 + +R+LA + +I NQ+ N GGN + ++ RL +R+ Sbjct: 328 KFLRQLARLADEFGVAVIVSNQVVANPEGGPFAGANALKPIGGNIMAHASTTRLALRKGR 387 Query: 231 AVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 G +K+V + + P +A+F I + Sbjct: 388 ---------GENRVMKIVCSPM-LPESEAQFSIGEDGIND 417 >UniRef50_D2EF50 DNA repair and recombination protein RadA n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EF50_9EURY Length = 345 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 36/289 (12%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 + +K +A A + F G ED+ V+ IST S +L+I LG GG+ I Sbjct: 72 EPTARKIVAEAREASKMNFMSGLEF---EDKRKSVQRISTSSEALNILLG-GGVETQSIT 127 Query: 64 EIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL----GVD-- 111 E YG SGK+ L Q+ Q +ID E P +L G+D Sbjct: 128 ECYGEYGSGKSQLAFQLAVDVQLPLEKGGLEGHAIWIDTEGTFRPSRIEQLAAVKGLDPK 187 Query: 112 --IDNLLCSQPDTGEQALEICDALAR----SGAVDVIVVDSVAALTPKAEIEGEIGDSHM 165 + N+ + + + + + D + + +IVVDS+ AL + G + Sbjct: 188 QALQNIKIGRAYSSDHQVLLVDKVPELINADPKIKLIVVDSMMALFRAEYV----GRGTL 243 Query: 166 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 225 + ++ + L + N + NQ+ + VMFG+P GG+ + A+ R+ Sbjct: 244 VDRQQKVNVVLHNLQRLADRFNVAVYITNQVMARPDVMFGDPTAAVGGHIIGHVATYRIY 303 Query: 226 IRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 +R+ RV + + + P +A F+I + E Sbjct: 304 LRKGKKGS----------RVGKLVDSPSLPEGEASFEITSNGITDLEEE 342 >UniRef50_A7ATP8 Rad51 protein, putative n=1 Tax=Babesia bovis RepID=A7ATP8_BABBO Length = 346 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 111/297 (37%), Gaps = 44/297 (14%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDR--SMDVETISTGSLSLDIALGAGGLPM 59 + E K A + +I K+ I E +++ +TGS +LD L GG+ Sbjct: 68 GLSEQKV----AKIKEIVKELCPPDICTAAEYLECRLNLIKFTTGSTALDALL-QGGIES 122 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLG 109 G I EI G S+GKT L + +Q C +ID +++ P A + G Sbjct: 123 GSITEIIGDFSTGKTQLCHTLAITSQLPIEQNGGEGKCLWIDTQNSFRPERLGPIANRFG 182 Query: 110 VD----IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTP-KAEIEGEIG 161 + + N++ + EQ ++ +++VDS AL GE+ Sbjct: 183 LSHAECVANIVYVKVSNTEQQFDMLVEAAHYMAQSRFAMLIVDSATALYRTDYTGRGELA 242 Query: 162 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV----MFGNPETTTGGNALK 217 M + + R L ++ NQ+ ++ M GN + GG+ + Sbjct: 243 ARQMS-----LGKYFRALKRLADIYGVAVVVTNQVMARVDNMSSFMGGNDKVPVGGHVVA 297 Query: 218 FYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 RL +R+ +RV V N + P +A F I G +++ Sbjct: 298 QNTQTRLFLRKAR----------GNSRVCKVYNSPSLPEGEAVFAIAEGGIVDYDDS 344 >UniRef50_C8XUF9 UvsX RecA-like recombination protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUF9_9CAUD Length = 361 Score = 155 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 131/336 (38%), Gaps = 25/336 (7%) Query: 9 KALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA---GGLPMGRIVEI 65 +L + ++ K+ + + D STG +DIA GGL G I + Sbjct: 3 SSLMDRMLKVAKKHDDQASVLSQSDALEPSIICSTGIPLIDIAWSGRIDGGLISG-IKMM 61 Query: 66 YGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 G + KT L + A C F D+E + Y +G+D+D +L D Sbjct: 62 VGDSRTFKTMFGLVDVKAYMDKFPDALCIFADSEKGANADYWTSMGIDMDRVLYVPIDNV 121 Query: 124 EQA---LEICDALARSGAVDVIVVDSVAALTPKAEIEGEI--GDSHMGLAARMMSQAMRK 178 EQ L + G +I +DS++ L E+E I D+ AR ++ R Sbjct: 122 EQTKIRLLQILQEVKKGDHVIIFIDSISQLPSTKEVEDAIKGNDTQDMTRARALNSFWRV 181 Query: 179 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 + + + +L++IN +IG + P G F +S + VKE +++ Sbjct: 182 ITPEINSKDLVLVWINSYYDEIGNQYAEPNIKGGKQG--FLSSNLIWFITRSQVKEDKDL 239 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 298 +G + ++K + + +LY GI+ + L+++ ++ + + + K Sbjct: 240 LGWNFNIGIMKGRHVKEKAKLPVTVLYDGGIDRWSGLLEIARALGYVDMPSSGWYVRTAK 299 Query: 299 IGQGKANATAW------------LKDNPETAKEIEK 322 G + L +N + A +++K Sbjct: 300 GGFDPEKEKKYQKRQMDDDFWYPLLENVDFADDVKK 335 >UniRef50_Q8IB05 Meiotic recombination protein dmc1-like protein n=11 Tax=Apicomplexa RepID=Q8IB05_PLAF7 Length = 347 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 65/291 (22%), Positives = 110/291 (37%), Gaps = 40/291 (13%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGE--DRSMDVETISTGSLSLDIALGAGGLPM 59 I E K + +IE S + E + V I+TGS D LG GG+ Sbjct: 72 GISEAKVDKILEVASKIE---NCSSFITANELVQKRSKVLKITTGSTVFDQTLG-GGIES 127 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLG 109 I E++G GKT + + AQ +ID E P A + G Sbjct: 128 MCITELFGENRCGKTQVCHTLAVTAQLPKSLNGGNGKVCYIDTEGTFRPEKVCKIAERYG 187 Query: 110 VD----IDNLLCSQPDTGEQALEIC---DALARSGAVDVIVVDSVAALTPKAEIEGEIGD 162 +D +DN+L ++ T E ++ A ++VVDS+ +L G Sbjct: 188 LDGEAVLDNILYARAFTHEHLYQLLAISAAKMCEEPFALLVVDSIISLFRV----DFSGR 243 Query: 163 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF---GNPETTTGGNALKFY 219 + + +++ M L+ +Q N ++ NQ+ G NP GG+ + Sbjct: 244 GELSERQQKLNKTMSILSKLSEQFNIAILITNQVMSDPGATMTFIANPMKPVGGHVIGHA 303 Query: 220 ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 +++RL +R+ + RV V + P + FQ+ I+ Sbjct: 304 STIRLSLRKGK----------GDQRVCKVYDAPNLPEVECIFQLSDKGVID 344 >UniRef50_UPI0001BCAEAD recA protein n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEAD Length = 466 Score = 153 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 151/351 (43%), Gaps = 25/351 (7%) Query: 3 IDENKQKALAAALGQIEKQFGK-GSIMRLGE----DRSMDVETISTGSLSLDIALGAGGL 57 + K+K L + K K G ++LG S + TG L +D L G Sbjct: 2 LSNEKRKKLDEFIKNQNKIAEKEGKEIKLGNLNDFKMSGRENYMLTGILGID--LNTNGF 59 Query: 58 PMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKL-GVDIDN 114 G IYG ES GK+TL LQ+ Q K ++D+E LD + ++ + +N Sbjct: 60 KKGTFNVIYGAESGGKSTLALQICEGFQLTDPDKQFLYVDSEGTLDETFINRIPNLKKEN 119 Query: 115 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 174 ++ + E + + + G VDVI++DSV ++T +++ + D+ + +R++S+ Sbjct: 120 MIFLKDGIMESIFDTIKEIVKEGLVDVIIIDSVDSMTTNSQLGKSLEDNIVMDKSRILSR 179 Query: 175 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 234 A+ L + + + I Q R+ + +GG A+ +Y S + +I + E Sbjct: 180 ALSDLTDFISKYGITIFIIQQERINMSGYTVRQHGRSGGKAMLYYPSTVYRLAKINSQNE 239 Query: 235 GENVVGSETR-----VKVV--KNKIAAPFKQAEFQILYGE----GINFYGELVDLGVKEK 283 E SE + VK++ K+KI+ PFK+ I + ELVD Sbjct: 240 TEKDQISENKVVTQYVKIINEKSKISEPFKETFTWINLDRRKKIAVKKIQELVDYATIYG 299 Query: 284 LIEKAGAWYSYKG----EKIGQGKANATAWLKDNPETAKEIEKKVRELLLS 330 LI K G+WY K QG L +NP+ E++ + L Sbjct: 300 LITKGGSWYEIVDSNGETKKVQGANGVNKLLSENPDFYTELKMLLYSKGLP 350 >UniRef50_Q02AB2 Protein recA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AB2_SOLUE Length = 248 Score = 153 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 101/266 (37%), Positives = 149/266 (56%), Gaps = 24/266 (9%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 +E +Q+A+ L ++ S+G +LD ALG GGLP G++V Sbjct: 3 EEERQRAIWLKLARMAP------------HSPARDTCFSSGFQALDEALG-GGLPRGQMV 49 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 123 E YGP GKTTL +Q+ A AQ G TCA+IDA+ D YA LG +D + +QPD+ Sbjct: 50 EFYGPSGCGKTTLAIQIAAHAQAGGLTCAWIDADRTFDAAYAAHLGAAVDRIPVAQPDSA 109 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 E+ LE+ AL SGAVD+++VDS AAL PK E+E IG GL +R++S +R L L Sbjct: 110 EEGLEVTRALIDSGAVDLVIVDSAAALVPKLELEAGIGYYSKGLHSRVLSSGLRNLRRAL 169 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 ++ ++F+NQ+R + G+ ET+ GG LK +A+VRL + + G+ Sbjct: 170 ARTGACVVFLNQVRNRPS--GGSGETSAGGPPLKLFAAVRLAL---------TPLEGTRL 218 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGI 269 R++V+KNK+AA E + + G G Sbjct: 219 RLRVLKNKVAAQTSGRELEWVRGSGF 244 >UniRef50_UPI0001C34D2F DNA repair protein RadA n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34D2F Length = 485 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 105/310 (33%), Gaps = 45/310 (14%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 L E E TG L+ LG GG+ G +V + G GK+TL LQV G Sbjct: 91 SLSEIELGREERTDTGFGELNRVLG-GGIVKGSLVLVGGDPGIGKSTLLLQVCRNLAAGG 149 Query: 89 KTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 + +I E +L I A ++G D+L E LE+ + R A D +++DS Sbjct: 150 QKVLYISGEESLKQIKIRASRIGEMSDSL----CFLCETNLEMIQEVVRRTAPDTVIIDS 205 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + + S + ++ Q K + + + K GV+ G Sbjct: 206 IQTMYLEEITSAPGSVSQVRECTNVLMQ-------IAKGLGITVFIVGHV-TKEGVVAGP 257 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 + + ++ R RI ++ VKN+ + + F++ Sbjct: 258 RVLEHMVDTVLYFEGDRHASYRI---------------LRGVKNRFGSTNEIGVFEMREE 302 Query: 267 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 + K + + +G G A A ++ E++ V Sbjct: 303 GLVEV---------------KNPSEFMLEGRPAGASGAVAACLVEGTRPLMLEVQALVTR 347 Query: 327 LLLSNPNSTP 336 P T Sbjct: 348 SNFGMPRRTA 357 >UniRef50_Q95Q25 Protein Y43C5A.6a, confirmed by transcript evidence n=5 Tax=Caenorhabditis RepID=Q95Q25_CAEEL Length = 395 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 41/282 (14%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 D+ +K + A+ ++ F G+ + + + I TGS SLD LG GG+ G I Sbjct: 122 DQKAEKIMKEAMKFVQMGFTTGAEVHVK---RSQLVQIRTGSASLDRLLG-GGIETGSIT 177 Query: 64 EIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVD-- 111 E+YG +GKT L + Q C +ID P A++ +D Sbjct: 178 EVYGEYRTGKTQLCHSLAVLCQLPIDMGGGEGKCMYIDTNATFRPERIIAIAQRYNMDSA 237 Query: 112 --IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTP-KAEIEGEIGDSHM 165 ++N+ ++ E + + + V++VD A + G++ + M Sbjct: 238 HVLENIAVARAYNSEHLMALIIRAGAMMSESRYAVVIVDCATAHFRNEYTGRGDLAERQM 297 Query: 166 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV----MFGNPETTTGGNALKFYAS 221 +S ++ LA + +I NQ+ ++ + + GG+ + ++ Sbjct: 298 K-----LSAFLKCLAKLADEYGVAVIITNQVVAQVDGGASMFQADAKKPIGGHIIAHMST 352 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 RL +R+ G K+V++ P +A + I Sbjct: 353 TRLYLRKGK---------GENRVAKMVQS-PNLPEAEATYSI 384 >UniRef50_P25453 Meiotic recombination protein DMC1 n=38 Tax=Saccharomyceta RepID=DMC1_YEAST Length = 334 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 115/292 (39%), Gaps = 42/292 (14%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E K +K AA I+ F ++ D V ++STGS LD LG GG+ Sbjct: 59 GLSEVKVEKIKEAAGKIIQVGFIPATV---QLDIRQRVYSLSTGSKQLDSILG-GGIMTM 114 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL--GVDI 112 I E++G GKT ++ + Q A+ID E P +++ G ++ Sbjct: 115 SITEVFGEFRCGKTQMSHTLCVTTQLPREMGGGEGKVAYIDTEGTFRPERIKQIAEGYEL 174 Query: 113 D------NLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALTP-KAEIEGEIGD 162 D N+ ++ E +E+ + L SG +IVVDS+ A GE+ + Sbjct: 175 DPESCLANVSYARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMANFRVDYCGRGELSE 234 Query: 163 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF----GNPETTTGGNALKF 218 ++Q + KL ++ N + NQ++ G + GG+ L Sbjct: 235 RQQK-----LNQHLFKLNRLAEEFNVAVFLTNQVQSDPGASALFASADGRKPIGGHVLAH 289 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 ++ R+ +R+ + RV +++ P K+ + I + Sbjct: 290 ASATRILLRKGR----------GDERVAKLQDSPDMPEKECVYVIGEKGITD 331 >UniRef50_B1YGS3 DNA repair protein radA n=12 Tax=Bacteria RepID=B1YGS3_EXIS2 Length = 461 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 105/310 (33%), Gaps = 45/310 (14%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 RL S + + TGS D LG GG+ G +V + G GK+T+ LQ A G Sbjct: 64 RLSNILSQEESRVFTGSGEFDRVLG-GGIVPGSMVLVGGDPGIGKSTILLQTSARLAARG 122 Query: 89 KTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 + +I E +L + A +LG+ +L E + + + + +++DS Sbjct: 123 EKVLYISGEESLKQTKLRAERLGLPTQDLFVL----SETDMNMIERVVDEENPAFLIIDS 178 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + + + M L K + + + K G + G Sbjct: 179 IQTVYIDEIQSAPGSVTQVRECTAM-------LMKIAKSRGIAIFIVGHV-TKQGSIAGP 230 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 +A+ ++ R RI ++ VKN+ + + F++ Sbjct: 231 RLLEHMVDAVLYFEGERHHTFRI---------------LRAVKNRFGSTNEIGIFEMRES 275 Query: 267 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 G+ ++ ++E+ +G+ A ++ E++ + Sbjct: 276 -GLEEVLNPSEIFLEERTSGVSGS--------------TIVASMEGTRTVLVELQALISP 320 Query: 327 LLLSNPNSTP 336 NP Sbjct: 321 TSFGNPRRMA 330 >UniRef50_Q4UA75 DNA repair (Rad51 homologue) protein, putative n=1 Tax=Theileria annulata RepID=Q4UA75_THEAN Length = 369 Score = 150 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 61/321 (19%), Positives = 111/321 (34%), Gaps = 67/321 (20%) Query: 2 AIDENKQKALAAALGQI-EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E K + AA ++ F G + ++ +TGS LD L GG+ G Sbjct: 68 GLSEQKVLKIKAACRELCHLGFCSGQDYL---EARGNLIKFTTGSSQLDKLL-QGGVETG 123 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGV 110 I EI G +GK+ L + Q C ++D+E P A++ G+ Sbjct: 124 SITEIIGEFKTGKSQLCHTLAVTCQLPVEQSGGEGKCLWVDSEGTFRPERIVSIAKRFGL 183 Query: 111 D----IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTP-KAEIEGEIGD 162 +DN+ ++ + LE+ + +++VDS +L GE+ Sbjct: 184 SPSDCLDNVAYARAYNTDHQLELLVEASAMMAQTRFALLIVDSATSLYRSDYSGRGELAS 243 Query: 163 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF------------------ 204 M L + +R L ++ NQ+ ++ M Sbjct: 244 RQMHLC-----KFLRALQRIADTFGVAVVITNQVVARVDAMSTFFGILLLYIIIYCYILI 298 Query: 205 -----------GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 253 GN + GG+ + + RL +R+ E+R+ V + Sbjct: 299 NICKFYIDKFVGNDKLPVGGHIIAHASQTRLFLRQSK----------GESRICKVYDSPV 348 Query: 254 APFKQAEFQILYGEGINFYGE 274 P +A F I G +++ Sbjct: 349 LPEGEAVFAITDGGINDYHDR 369 >UniRef50_Q8TVF0 RadA recombinase n=1 Tax=Methanopyrus kandleri RepID=Q8TVF0_METKA Length = 317 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 109/291 (37%), Gaps = 41/291 (14%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 + E + + L I+ +F E I+TGS +LD LG GG+P G Sbjct: 44 GMSERDVEDIQEELRNIDVEFET------LEKLERKRRRITTGSSALDEILG-GGVPCGE 96 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHALDPIY----ARKLGVD 111 + E GP SGK+ + Q+ Q + FID E + P A LG+D Sbjct: 97 LTEFAGPFGSGKSQIVFQLCVNVQLPEEEGGLESKAIFIDTEGTVSPGRIKGMAEALGLD 156 Query: 112 ----IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 164 + N+ +Q + E+ + + L + ++V+DS+ A + Sbjct: 157 PGEALRNVFVTQVRSVEEQMRAAEEAHKLCEREDIGLVVIDSLTAHFRAEYSKLG----D 212 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF---GNPETTTGGNALKFYAS 221 + + + + +L + ++F NQ+ + I G GG + A+ Sbjct: 213 VSERQARLMKHVDQLRNLAMDHDVAVVFTNQVHVDIEAATKGKGRRYEPVGGTIVAHQAT 272 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 272 R+ +RR E R+ + + P ++A F+I + Sbjct: 273 HRIMLRRAK----------GEVRIARIIDSPYLPQREAAFRITEEGIRDVE 313 >UniRef50_P04529 Recombination and repair protein n=12 Tax=T4-like viruses RepID=UVSX_BPT4 Length = 391 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 67/397 (16%), Positives = 146/397 (36%), Gaps = 58/397 (14%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA---GGLPM 59 + + K + + A+ ++ + + T ++IAL GG+ Sbjct: 1 MSDLKSRLIKASTSKLTAELTASKFFNEKDVVR-------TKIPMMNIALSGEITGGMQS 53 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKLGVDIDNLLC 117 G ++ + GP S K+ L ++++ R C F D+E + P Y R +GVD + ++ Sbjct: 54 GLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIH 112 Query: 118 SQPDTGEQA-LEICDAL--ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL--AARMM 172 + + EQ +++ + L G V+ +DS+ L K E E + + + A+ M Sbjct: 113 TPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTM 172 Query: 173 SQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 232 R + N I IN + +T GG Y++ + I + Sbjct: 173 KSLFRIVTPYFSTKNIPCIAINHTYETQEMF---SKTVMGGGTGPMYSADTVFIIGKRQI 229 Query: 233 KEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWY 292 K+G ++ G + + V K++ + + + GI+ Y L+D+ ++ + K + Sbjct: 230 KDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFDGGIDPYSGLLDMALELGFVVKPKNGW 289 Query: 293 S---YKGEKIGQGKANATAW-------------LKDNPETAK------------------ 318 + E+ G+ +W L + Sbjct: 290 YAREFLDEETGEMIREEKSWRAKDTNCTTFWGPLFKHQPFRDAIKRAYQLGAIDSNEIVE 349 Query: 319 -EIEKKVRELL--LSNPNSTPDFSVDDSEGVAETNED 352 E+++ + + +P S + D + + ++ Sbjct: 350 AEVDELINSKVEKFKSPESKSKSAADLETDLEQLSDM 386 >UniRef50_Q48761 DNA repair protein radA homolog n=38 Tax=Bacteria RepID=RADA_LISMO Length = 457 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 104/327 (31%), Gaps = 45/327 (13%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 + + + S + + T L+ LG GG+ G +V + G Sbjct: 43 KKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELNRVLG-GGVVPGSMVLVGGDPGI 101 Query: 72 GKTTLTLQVIAAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEI 129 GK+TL LQV A K +I E ++ + A +L V DNL E LE Sbjct: 102 GKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVY----AETNLEA 157 Query: 130 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 189 D +V+DS+ + S + L K N Sbjct: 158 VQETIDFVKPDFVVIDSIQTVYHSDVTSAAGSVSQVRECTA-------TLMRIAKMQNIA 210 Query: 190 LIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVK 249 + + + K G + G + + ++ R RI ++ VK Sbjct: 211 IFIVGHV-TKEGAIAGPRLLEHMVDTVLYFEGERHHAYRI---------------LRAVK 254 Query: 250 NKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAW 309 N+ + + F++ G+ ++ ++E+L +G+ A Sbjct: 255 NRFGSTNEMGIFEMR-DVGLVEVANPSEVFLEERLEGASGS--------------TVVAS 299 Query: 310 LKDNPETAKEIEKKVRELLLSNPNSTP 336 ++ EI+ V + N Sbjct: 300 MEGTRPVLVEIQALVSPTMFGNAKRMA 326 >UniRef50_C1FJ81 DMC1 DNA recombinase n=5 Tax=Chlorophyta RepID=C1FJ81_9CHLO Length = 359 Score = 147 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 114/292 (39%), Gaps = 39/292 (13%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDR--SMDVETISTGSLSLDIALGAGGLP 58 + + K K L AA + K GS + E D I TG+ ++D LG GG+P Sbjct: 81 GLSDAKVDKMLEAANKLLPKDQA-GSFVTAKEWMSMRKDTINIRTGADTIDAILG-GGVP 138 Query: 59 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GK-TCAFIDAEHALDPIY----ARKL 108 I E+YG GKT + + Q G AFID E A + Sbjct: 139 TRSITEMYGEWRCGKTQICHTLAVTTQLPLDEGGGCAKVAFIDTEGTFRAERIVQIAERF 198 Query: 109 GVD----IDNLLCSQPDTGE---QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 161 +D +DN+L ++ T E AL + ++++DS+ A IG Sbjct: 199 NLDSDAVLDNILVARTFTHEMMDNALTLLAGKFSEEPFKILIIDSIMAHFRV----DFIG 254 Query: 162 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM---FGNPETTTGGNALKF 218 + + + Q + KL + N +++ NQ++ M +P+ GG+ L Sbjct: 255 RGELSERQQRLGQFLAKLNKIADEFNIAVVYTNQVQADPSGMSFAGMDPKKAIGGHVLAH 314 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 + VRL +R+ G +KVV + + EF I G ++ Sbjct: 315 ASHVRLSVRKGR---------GDARVIKVV-DAPNLKEAEGEFIITDGGVVS 356 >UniRef50_A3EUB1 DNA repair protein radA n=2 Tax=Leptospirillum sp. Group II RepID=A3EUB1_9BACT Length = 461 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 108/323 (33%), Gaps = 46/323 (14%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 + + G +R+ + + VE S+G D LG GG G + + G GK+T Sbjct: 48 SLLSEGDGTPRALRMEDVGKVAVERTSSGFREFDRVLG-GGFVRGSFILLGGDPGVGKST 106 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDAL 133 L LQ +A G + E + + + R +LG +L E LE Sbjct: 107 LALQAVAHMA-NGHKVLYAAGEESPEQVRMRYDRLGRKGGDLFIL----PETDLEAIVRE 161 Query: 134 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 193 + + + +VVDS+ +T A+ ++ ++ L K+++ ++ + Sbjct: 162 VKRLSPEFLVVDSIQTVTMGADGPSSGSVG-------LLRESASVLLELAKRASVTVLIV 214 Query: 194 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 253 + K GV+ G + + + R R+ ++ VKN+ Sbjct: 215 GHV-TKEGVIAGPRVLEHLVDTVLYLEGDRSHPVRL---------------LRTVKNRFG 258 Query: 254 APFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDN 313 + F++ + + +G K + + L+ Sbjct: 259 PTRELGIFEMSPDGLREVE---------------NASSFFLEGRKERLSGSVVVSSLEGT 303 Query: 314 PETAKEIEKKVRELLLSNPNSTP 336 E++ V NP Sbjct: 304 RPLLVELQSLVSPTTFPNPRRVA 326 >UniRef50_C1SL59 DNA repair protein radA n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL59_9BACT Length = 445 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 104/326 (31%), Gaps = 49/326 (15%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + AA I K+ K + L + + ++ E TG LD LG GGL G ++ + G Sbjct: 39 VDAATTAIGKRIAKAKPVSLKDVKGLETERTPTGMPELDQVLG-GGLVKGSVLLVGGEPG 97 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALE 128 GK+T+ LQ R+ ++ E + + R +LGV + + ++ E L+ Sbjct: 98 IGKSTIMLQCAGILSRDRLKVLYVSGEESAAQLRLRSDRLGVSENEIDILSTNSLEDVLQ 157 Query: 129 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 188 D I++DS+ + + +L K Sbjct: 158 A----CEEEKPDYIILDSIQTIASDDLNSAAGTVGQVK-------HVTYRLVELAKSRGI 206 Query: 189 LLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVV 248 ++ + Q+ K G + G + + ++ + ++ V Sbjct: 207 TVMIVGQV-TKDGYIAGPKVLEHLVDTVLYFEG---------------DYSRGVRILRSV 250 Query: 249 KNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ-GKANAT 307 KN+ + F++ + + YS+ ++ Sbjct: 251 KNRFGPTNEVGLFEMTDKGLLEL------------------SSYSFVDDRADNSAGRVFV 292 Query: 308 AWLKDNPETAKEIEKKVRELLLSNPN 333 ++ E++ V P Sbjct: 293 PVMEGTRAFLIEVQALVAPTFYQFPK 318 >UniRef50_Q9KGG1 DNA repair protein radA homolog n=84 Tax=Bacteria RepID=RADA_BACHD Length = 457 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 106/327 (32%), Gaps = 45/327 (13%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 ++ + G + + I T L+ LG GG+ G +V + G Sbjct: 43 KSSRSYVTSGAGIAKPQPITKVEREQEPRIDTSMKELNRVLG-GGIVPGSLVLVGGDPGI 101 Query: 72 GKTTLTLQVIAAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEI 129 GK+TL LQ+ A + +I E ++ I + +LGV D+L E +E Sbjct: 102 GKSTLLLQLSARLADLKQRVLYISGEESVKQTKIRSDRLGVLSDHLYVL----AETDMEK 157 Query: 130 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 189 + ++++DS+ + + + K + Sbjct: 158 IEQAIGEVDPTLVIIDSIQTVYQDEITSAPGSVAQVRECTASF-------MRIAKTTGVA 210 Query: 190 LIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVK 249 + + + K G + G +++ ++ R RI ++ VK Sbjct: 211 IFIVGHV-TKQGAIAGPKLLEHMVDSVLYFEGERHHTYRI---------------LRAVK 254 Query: 250 NKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAW 309 N+ + + F++ G+ ++ ++++ AG+ A Sbjct: 255 NRFGSTNEMGIFEMKES-GLEEVANPSEIFLEDRSSGVAGS--------------TVVAS 299 Query: 310 LKDNPETAKEIEKKVRELLLSNPNSTP 336 ++ E++ + NP Sbjct: 300 MEGTRPVLVELQALISPTSFGNPRRMA 326 >UniRef50_Q5GQK3 RecA-like recombination protein n=6 Tax=root RepID=Q5GQK3_BPSYP Length = 343 Score = 146 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 132/321 (41%), Gaps = 31/321 (9%) Query: 40 TISTGSLSLDIALGA---GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFI 94 + TGS + + GG+P +I + G +GKT L V+ + Sbjct: 31 FVDTGSYIFNALVSGSIFGGIPSNKITALAGESGTGKTFFCLSVVRNFLNTDPDAGVIYF 90 Query: 95 DAEHALDPIYARKLGVDIDNLLCSQPDTGE----QALEICDALARSG----AVDVIVVDS 146 + E A+ G+D ++ DT E QA+ I D + V+DS Sbjct: 91 ETESAISKQMIESRGIDSTRMIIFPVDTIEDFRTQAVRIIDKYMEQNKSERKPLMFVLDS 150 Query: 147 VAALTPKAEIEGEIGDSHMGL--AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 + L K E+E D + A+++ A R L + ++N ++ N +G Sbjct: 151 LGMLATKKEVEDASNDKQVRDMTKAQIVKSAFRILTLKMGKANIPMLVTNHTYDVVGSYV 210 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 E GG+ LK+ AS + + + K+G ++VG+ + + K+++ + E ++ Sbjct: 211 PTKEM-GGGSGLKYSASTIVYLGK-KKEKDGTDLVGNIIKCEAKKSRLTREGSKVETRLF 268 Query: 265 YGE-GINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP------ETA 317 + + G+ Y +++LG E+AG W + G GK + NP E Sbjct: 269 FDQRGLERYYGMLELG------ERAGLWKNTAGRYEINGKKVYGKQILANPDEFFTEEIL 322 Query: 318 KEIEKKV-RELLLSNPNSTPD 337 +E++K+ RE L + D Sbjct: 323 QELDKQAQREFLYGASDDGED 343 >UniRef50_Q04QR6 DNA repair protein radA n=6 Tax=Leptospira RepID=Q04QR6_LEPBJ Length = 459 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 62/315 (19%), Positives = 113/315 (35%), Gaps = 45/315 (14%) Query: 25 GSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 84 + L +E + TG LD+ LG GGL G + I G GK+TL L+V Sbjct: 57 QEPIPLDRVEEESLERMGTGLKELDLVLG-GGLVPGSLTLIGGEPGVGKSTLVLEVSRYL 115 Query: 85 QREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 142 + K +I E + I R ++G NLL T E E A+ + Sbjct: 116 TQANKKVLYISGEESPSQIRMRAERMGFRSSNLLL----TSETYAENISAMIEGARPTAV 171 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 202 VDS+ + +A + + + + L K+S ++ I K G Sbjct: 172 FVDSIQTIAREALPNQAGTVTQ-------LRECTQILLETAKRSGIPILMTGHI-TKEGT 223 Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQ 262 + G + + ++ RL+ R+ ++ VKN+ A A F+ Sbjct: 224 IAGPKILEHLVDTVLYFEGDRLNYYRL---------------LRAVKNRFGAVGDLAIFE 268 Query: 263 ILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 322 + + G+ G+ + V E++G+ +A L+ + E++ Sbjct: 269 M-FSGGLREVGDRNSIFVSAGAEERSGS--------------VISAVLEGSRALTVEVQA 313 Query: 323 KVRELLLSNPNSTPD 337 V + + + Sbjct: 314 LVSKTGFAQARRMAE 328 >UniRef50_A2SR54 DNA repair and recombination protein radA n=31 Tax=Archaea RepID=RADA_METLZ Length = 329 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 115/301 (38%), Gaps = 52/301 (17%) Query: 4 DENKQKALAAALGQIE-KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 + +K + AA + F G+ + R DV + T +D G GGL I Sbjct: 47 ESTTKKIIKAAREMADIGGFKTGTDILA---RRQDVLKLKTLVPEIDELFG-GGLETQAI 102 Query: 63 VEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVDID--- 113 E+YG SGK+ + Q+ Q G +C +ID E+ P ++ ++ Sbjct: 103 TELYGEFGSGKSQIAHQLAVNCQLPQELGGLGGSCLYIDTENTFRPERIEQMAEGLELAD 162 Query: 114 ---------------NLLCSQPDTGEQALEICDAL--------ARSGAVDVIVVDSVAAL 150 N+ ++ + + + + DA A V ++++DS+ +L Sbjct: 163 LPEGYVVPTPDEFLANIHVARAHSSDHQMLLIDAARELSNELTASGLPVKLVIIDSLTSL 222 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 G + + +++ M L + N + + NQ+ G++FG+P Sbjct: 223 FRSEY----AGRGTLAGRQQKLNRHMHDLFKLVDDLNAVALVTNQVMANPGLLFGDPTKP 278 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 GGN + A+ R+ +R+ A K +V + P +A F ++ GI Sbjct: 279 IGGNIVGHTATYRVYLRKSKAGKRIARLV----------DSPNLPEGEATF-MVETAGIK 327 Query: 271 F 271 Sbjct: 328 P 328 >UniRef50_P37572 DNA repair protein radA homolog n=6 Tax=Firmicutes RepID=RADA_BACSU Length = 458 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 113/334 (33%), Gaps = 51/334 (15%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 N++ A + ++ ++K SI + + + T + LG GG+ G +V Sbjct: 43 ANRRAAFSHSVQTVQKPSPITSI------ETSEEPRVKTQLGEFNRVLG-GGVVKGSLVL 95 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDT 122 I G GK+TL LQV A + +I E ++ + A +LG++ +L Sbjct: 96 IGGDPGIGKSTLLLQVSAQLSGSSNSVLYISGEESVKQTKLRADRLGINNPSLHVL---- 151 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 E +E + + +VVDS+ + S + L Sbjct: 152 SETDMEYISSAIQEMNPSFVVVDSIQTVYQSDITSAPGSVSQVRECTAE-------LMKI 204 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 K + + + K G + G + + ++ R RI Sbjct: 205 AKTKGIPIFIVGHV-TKEGSIAGPRLLEHMVDTVLYFEGERHHTFRI------------- 250 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 ++ VKN+ + + F++ G+ ++ ++E+ AG+ Sbjct: 251 --LRAVKNRFGSTNEMGIFEMREE-GLTEVLNPSEIFLEERSAGSAGSS----------- 296 Query: 303 KANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 336 TA ++ EI+ + NP Sbjct: 297 ---ITASMEGTRPILVEIQALISPTSFGNPRRMA 327 >UniRef50_C1MTK4 Rad51 DNA recombinase 1 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MTK4_9CHLO Length = 411 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 108/283 (38%), Gaps = 42/283 (14%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E K +K AAA+ + F S++ + ISTGS LD LG GG G Sbjct: 73 GLSEMKVEKLKAAAMKVVPLGFTTASMV---QAVRESTIMISTGSSKLDELLG-GGFESG 128 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGV 110 + EIYG +GKT L + Q +ID E P A + G+ Sbjct: 129 SLTEIYGEFRTGKTQLCHTLAVTCQLPLAQGGAEGKAMYIDTEGTFRPQRLIAIAERFGM 188 Query: 111 D----IDNLLCSQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTP-KAEIEGEIGD 162 D +DN+ ++ E E+ A + VI+VDSV L + E GE+ Sbjct: 189 DSAAVLDNVAYAKAHNCEHQSELLVAAAGMMAEARFGVIIVDSVTNLYRTEYEGRGELSA 248 Query: 163 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM----FGNPETTTGGNALKF 218 M + + +R+LA + ++ NQ+ N GGN + Sbjct: 249 RQMH-----LGKFLRQLARLADEFGVAVVVTNQVVANPDGNAMFAGANAMKPIGGNIMAH 303 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEF 261 ++ RL +R+ E R+ + P +A+F Sbjct: 304 ASTTRLALRKGR----------GENRIAKIACSPVLPESEAQF 336 >UniRef50_B3T9S3 Putative DnaB-like helicase C terminal domain protein n=1 Tax=uncultured marine microorganism HF4000_APKG7H23 RepID=B3T9S3_9ZZZZ Length = 459 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 99/311 (31%), Gaps = 45/311 (14%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 +L E + D +S G +D LG G +P G ++ I G GK+TL LQ+ + G Sbjct: 62 KLREYEASDQPRVSVGLAEVDRLLGGGAVP-GSLLLIAGEPGIGKSTLLLQMASHLAGTG 120 Query: 89 KTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 +I E + + R +LGV + GE+ L +AL ++ +VDS Sbjct: 121 APVLYISGEESAAQVRLRAQRLGVSSAEVHFLAETNGERILNELEAL----RPEMAMVDS 176 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + L+ + + +M L K+ + + K G + G Sbjct: 177 IQTLSSDGVPSAAGSVAQVRECTQM-------LLRWAKERGCPIFLAGHV-TKDGAIAGP 228 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 + + L R+ ++ KN+ A A ++ Sbjct: 229 RVLEHMVDVVISLEGESLSSYRL---------------LRCTKNRFGATNDVALLEMRGD 273 Query: 267 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 + + G + T L+ E++ Sbjct: 274 GMAEVPDP---------------SAVLLGERQPGTSGSAVTVTLEGTRPLMAEVQALTNP 318 Query: 327 LLLSNPNSTPD 337 L S P T + Sbjct: 319 SLFSPPRRTAN 329 >UniRef50_C0WE34 DNA repair protein radA n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE34_9FIRM Length = 456 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 63/337 (18%), Positives = 106/337 (31%), Gaps = 45/337 (13%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 ++ E + K + L E + V I TG D LG GG+ G Sbjct: 34 SLVEEVDAPVDRHRPSYLKTAEHVAPKTLREVDKVKVNRIPTGITEFDRVLG-GGIVPGS 92 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQ 119 ++ + G GK+T+TL V A G ++ E + A +LG D L Sbjct: 93 LILLGGAPGIGKSTITLDVSMKAANRGIPVLYVSGEESEAQTAMRAERLGTASDALKVMT 152 Query: 120 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179 L AR A ++V+DS+ + + KL Sbjct: 153 ATE----LGTILVEARKDAPKLLVIDSIQTMYNSELETAAGSVGQVRECTA-------KL 201 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV 239 K+SN +I I + K G + G + + + R R+ Sbjct: 202 LNFAKESNIAIIIIGHV-TKEGNIAGPRLLEHMVDVVLQFEGDRSYTYRV---------- 250 Query: 240 GSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKI 299 ++ +KN+ + + F + EG+ L ++ K G+ Sbjct: 251 -----LRALKNRFGSTSECGIFSM-EAEGLQEVSNPSGLFLETKEKPVPGS--------- 295 Query: 300 GQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 336 TA ++ N EI+ P T Sbjct: 296 -----VITATIEGNRPILAEIQALAAHTPFGMPRRTA 327 >UniRef50_O66827 DNA repair protein radA homolog n=8 Tax=Aquificales RepID=RADA_AQUAE Length = 444 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 115/311 (36%), Gaps = 47/311 (15%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 ++ + + + E +TG SLD ALG GGL G+++ I G GK+TL LQ+ Sbjct: 49 PSLVLPVTDWEKEEHERETTGFESLDNALG-GGLVKGQVILIAGEPGIGKSTLLLQISDR 107 Query: 84 AQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 141 GK ++ E + I A++LG++ +NLL E+ L+ + + Sbjct: 108 VA-NGKKVLYVSGEESGTQIALRAKRLGINNENLLVYPEVNLEKILQTLEK----EKPSL 162 Query: 142 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 +V+DSV + + S + + ++ K+ N + QI K G Sbjct: 163 LVLDSVQTIFSERLESSAGSVSQ-------VREVTYRITEFCKEKNVPAFIVGQI-TKEG 214 Query: 202 VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEF 261 + G + + + R + RI VKV+KN+ + + A F Sbjct: 215 SIAGPKVLEHIVDTVLQFEGERFNFYRI---------------VKVIKNRFGSTGEIAVF 259 Query: 262 QILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIE 321 ++ + L E + EK + + + E++ Sbjct: 260 KM----------------TDKGLEEVPEPSAFFISEKANAPGSVVFPHTEGSKPVLLEVQ 303 Query: 322 KKVRELLLSNP 332 V L + P Sbjct: 304 ALVIPALYTTP 314 >UniRef50_B0K5E6 DNA repair protein radA n=40 Tax=Bacteria RepID=B0K5E6_THEPX Length = 457 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 104/326 (31%), Gaps = 46/326 (14%) Query: 13 AALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 72 + K + I L + + E I TG D LG GG+ G +V I G G Sbjct: 39 ESSKNFRKTKDRSQIYLLEDVTFSEEERIRTGIEEFDRVLG-GGIVKGSLVLIGGDPGIG 97 Query: 73 KTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEIC 130 K+TL LQV + ++ E ++ I A ++ + + E+ Sbjct: 98 KSTLLLQVAGNISDS-RKVLYVSGEESVQQIKLRADRILKEKQRIYLLCETNIEE----I 152 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + D +++DS+ + + S + Q +KL KQ + + Sbjct: 153 ERKIDENKPDFVIIDSIQTIYTEESETIPGSVSQ-------IRQVTQKLMEIAKQKDISI 205 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 I + K G + G + + ++ R RI ++ VKN Sbjct: 206 FLIGHV-TKEGAIAGPKVLEHMVDTVLYFEGDRTQSFRI---------------LRAVKN 249 Query: 251 KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWL 310 + A + F + G+ + + K + +G + + Sbjct: 250 RFGATHEIGVFDMEED-GLCEISNPSEFILSNKPKDVSGT--------------AVVSSI 294 Query: 311 KDNPETAKEIEKKVRELLLSNPNSTP 336 + E++ + + P Sbjct: 295 QGTRPILMEVQSLICKTTFGVPRRMA 320 >UniRef50_UPI0001C312A2 DNA repair protein RadA n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312A2 Length = 466 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 103/310 (33%), Gaps = 42/310 (13%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 + +RLGE ++ +VE + TG LD LG GG+ G +V I G GK+TLT +A Sbjct: 66 APVRLGEVQASEVERLPTGIGELDRVLG-GGIVPGSLVLIGGSPGIGKSTLTTMAVANLT 124 Query: 86 REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 G+ ++ AE + I R + L P E L A DV V+D Sbjct: 125 GAGRKTLYVSAEESAAQIKLRAERLPGAALEI--PVIAETDLGAVLATLERERPDVCVID 182 Query: 146 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205 SV L + A + + KQ ++ + + K G + G Sbjct: 183 SVQTLHAAELTGAPGSVGQVREVAGEIMRV-------AKQHRIAVLLVGHV-TKEGALAG 234 Query: 206 NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILY 265 + + + R R ++ +KN+ + + F++ Sbjct: 235 PRVLEHLVDCVLQFEGERERTYR---------------TLRALKNRFGSTSEAGVFEMRQ 279 Query: 266 GEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVR 325 G + A + GE + ++ + E++ V Sbjct: 280 GGLVEVLD----------------ASARFVGEATHAPGSVVLCAMEGSRPLLVEVQALVS 323 Query: 326 ELLLSNPNST 335 L P Sbjct: 324 PSELVPPRRV 333 >UniRef50_B1L9V3 DNA repair protein radA n=6 Tax=Thermotogaceae RepID=B1L9V3_THESQ Length = 441 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 91/265 (34%), Gaps = 34/265 (12%) Query: 19 EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 78 ++ + L + + +E +STG LD A GG+ G+++ + G GK+T+ L Sbjct: 38 NREGSPSLFLNLEDAGEISLERLSTGFSELDRAF-RGGIVPGQVILLSGEPGIGKSTIAL 96 Query: 79 QVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ----PDTGEQALEICDALA 134 Q+ G ++ E + + R D LL + T E ++ + Sbjct: 97 QIAERFAERGL-VVYVSGEESPQQLKLRA-----DRLLLKRKKDILLTLENDIDEIISSL 150 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 ++ V +VVDS+ + S + K K+ ++ + Sbjct: 151 QNKRVSFMVVDSIQTVFSSDLGSSPGSISQVKN-------VTMKTIDFAKRRGVPVLLVG 203 Query: 195 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 + K G + G + + ++ R R+ +K+ KN+ Sbjct: 204 HV-TKEGEIAGPKLVEHMVDTVAYFEGDRRTGLRL---------------LKITKNRFGP 247 Query: 255 PFKQAEFQILYGEGINFYGELVDLG 279 + A F++ + G Sbjct: 248 SDEVAVFELKENGFVQVENPSFTEG 272 >UniRef50_UPI0000D55904 PREDICTED: similar to Dmc1 homolog n=1 Tax=Tribolium castaneum RepID=UPI0000D55904 Length = 356 Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats. Identities = 61/288 (21%), Positives = 108/288 (37%), Gaps = 35/288 (12%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 + + +K + G I + + E V ISTGS +LD LG GG+ Sbjct: 75 SFNPSKVSKIQEICGNISFSNRFMTAFEVSEACKQ-VFKISTGSANLDKLLG-GGVESMS 132 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEHALDPIYARKLGVD----- 111 I +++G SGKT + + Q G FID E + P R++ Sbjct: 133 ITQVFGEAGSGKTQIAHTLCVTTQIPTEDYSGGKVMFIDTERSFRPNRIRQIARRFHLSE 192 Query: 112 ---IDNLLCSQPDTGEQALEICDALA-----RSGAVDVIVVDSVAALTPKAEIEGEIGDS 163 + N+L + E +I +A +G +++VDS+ AL +G Sbjct: 193 DSVLQNILYIRAYNSEHQYQILKNVAVKFHEDTGVFKLLIVDSIIALFR----NDFMGRG 248 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF-----GNPETTTGGNALKF 218 + + +++ M L ++ N + NQ+ + F G+ GGN L Sbjct: 249 VLLNRQQKLAETMSLLKKISEEYNVAVFITNQVTTSMNNKFPLLTIGDDVKPVGGNILAH 308 Query: 219 YASVRLDIR------RIGAVKEGENVVGSETRVKVVKNKIAAPFKQAE 260 ++ R+ +R RI + + + E + + P AE Sbjct: 309 SSTTRVALRKLTGNVRIAKIHDSPELAEQEEAFTITNGGVQDPILDAE 356 >UniRef50_Q97EC5 DNA repair protein radA n=1 Tax=Clostridium acetobutylicum RepID=Q97EC5_CLOAB Length = 450 Score = 140 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 105/336 (31%), Gaps = 50/336 (14%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 ++E + + A+ + + +S E T + L+ LG GGL G I Sbjct: 34 VEEERVENKKASKITLN-----SEPKCINNIKSGQYERYDTNNTELNRVLG-GGLVKGSI 87 Query: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQP 120 I G GK+TL LQ+ + ++ E + I R +LGV N+ Sbjct: 88 TLISGAPGIGKSTLLLQICQDIALKYGKVLYVSGEESEHQIKMRGDRLGVTSANIYIL-- 145 Query: 121 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 E +E + + +++DS+ L S + A + Sbjct: 146 --AETNMESIERHVENIKPAFVIIDSIQTLYKDQITSAPGSVSQVRECA-------NDIM 196 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 240 K N + + K G + G + + + R + RI Sbjct: 197 RIAKTDNIPFFIVAHV-TKQGELAGPRVLEHIVDTVLTFEGQRTEEFRI----------- 244 Query: 241 SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG 300 ++ VKN+ + F++ G+ L ++E + G+ Sbjct: 245 ----LRTVKNRFGTTSEIGVFEMKEE-GLEQIHNPSSLFLEETNFNQEGS---------- 289 Query: 301 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 336 ++ EI+ V + P T Sbjct: 290 ----VVIGIMEGTRPILVEIQALVSKTNAVMPRRTS 321 >UniRef50_Q1RJR7 DNA repair protein radA homolog n=14 Tax=Rickettsiales RepID=RADA_RICBR Length = 448 Score = 140 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 112/305 (36%), Gaps = 37/305 (12%) Query: 14 ALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 73 + I K K +L + + V IST LD LG GGL +G + I G GK Sbjct: 40 SNKNIAKIGSKQDFEQLSSNVTDQV-RISTPIGELDRVLG-GGLVLGSAILIGGDPGIGK 97 Query: 74 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI--DNLLCSQPDTGEQALEICD 131 +TL LQ++A + C +I E +LD I R L +D+ D + E + + Sbjct: 98 STLLLQLVAGSFASKVKCLYITGEESLDQIKLRALRLDLVNDKTNILAANNLEDIIASLE 157 Query: 132 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 191 A G +D++V+DS+ + + S + A +L KQ+N +++ Sbjct: 158 A--NKGNIDLVVIDSIQTIATRELTSPPGTVSQIRTCA-------HELVNYAKQNNIIIL 208 Query: 192 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 + K G + G + + ++ + RI ++ KN+ Sbjct: 209 LSCHV-TKDGQLAGPKLLEHLVDTVLYFEGDHNNHFRI---------------LRSYKNR 252 Query: 252 IAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLK 311 + F++ I V + L+++ G I G + L Sbjct: 253 FGGVGEIGVFEMSSSGLIE-----VTNPSELFLMKREQN---VIGTAIFAGIEGSRPLLM 304 Query: 312 DNPET 316 + Sbjct: 305 EVQAL 309 >UniRef50_B5YF80 DNA repair protein radA n=2 Tax=Dictyoglomus RepID=B5YF80_DICT6 Length = 457 Score = 140 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 49/323 (15%), Positives = 101/323 (31%), Gaps = 42/323 (13%) Query: 17 QIEKQFGKGS--IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 74 +++K+ K + RL + + + + TG D +G GG+ G + + G GK+ Sbjct: 42 KVDKRVNKEELEVYRLDQILNYEPVRLKTGLTGFDYIIG-GGIVEGSVTLLAGEPGIGKS 100 Query: 75 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 134 TL LQ+ + +E +I AE +L + R + + L E+ +E Sbjct: 101 TLLLQLAISLSKESSRVLYISAEESLSQVGLRLKRLTSKDRLDID-FVSERDIENILPEL 159 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 +I+VDS+ + + KL K++N +I + Sbjct: 160 EKFNYSLIIVDSIQTIYSSEFPTSPGNVVQVRECT-------SKLVDFAKKNNVAVILVG 212 Query: 195 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 + K G + G + + + R ++VVKN+ Sbjct: 213 HV-TKEGDIAGPKILEHLVDVVLYLEGERYH---------------DLRVLRVVKNRFGP 256 Query: 255 PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP 314 +++ + + I + ++ Sbjct: 257 TNDFILYEMKESGLFEVEDI---------------SAKMIENRNINVAGSIIVPVMEGTK 301 Query: 315 ETAKEIEKKVRELLLSNPNSTPD 337 E++ V + S P Sbjct: 302 PLLIELQALVSKTNTSYPRRIAS 324 >UniRef50_Q0CWT1 Meiotic recombination protein DMC1 n=22 Tax=Dikarya RepID=Q0CWT1_ASPTN Length = 607 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 43/252 (17%) Query: 34 RSMDVETISTGSLSLDIALGAG----------------GLPMGRIVEIYGPESSGKTTLT 77 + V ISTGS D LG G I E++G GKT L+ Sbjct: 6 QRKKVVRISTGSKQFDAILGGQVTSLSRLLHALLTAFRGFQSMSISEVFGEFRCGKTQLS 65 Query: 78 LQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGVDID----NLLCSQPDTG 123 + AQ A+ID E P A + GVD D N+ ++ Sbjct: 66 HTMSVVAQLPKEMGGAEGKVAYIDTEGTFRPERIAQIAERFGVDPDSAQENIAYARALNS 125 Query: 124 EQALEICDALAR---SGAVDVIVVDSVAALTP-KAEIEGEIGDSHMGLAARMMSQAMRKL 179 E LE+ + L+R SG ++++DS+ GE+ D ++Q + KL Sbjct: 126 EHQLELLNTLSREFASGDYRLLIIDSIMNCFRVDYCGRGELADRQQK-----LNQFLMKL 180 Query: 180 AGNLKQSNTLLIFINQIRMKIGVM----FGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 A ++ N ++ NQ++ G + GG+ L ++ R+ +R+ + Sbjct: 181 AHMAEEFNVCVLMTNQVQSDPGASALFAGADGRKPVGGHVLAHASTTRVLLRKGRGDERV 240 Query: 236 ENVVGSETRVKV 247 + S V V Sbjct: 241 AKIQDSPDIVCV 252 >UniRef50_C9RKL6 DNA repair protein radA n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKL6_FIBSS Length = 463 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 90/271 (33%), Gaps = 25/271 (9%) Query: 8 QKALAAALGQIEKQFGKG---------SIMRLGEDRSMDVETISTGSLSLDIALGAGGLP 58 + +I G+ ++ L + + D +ST + D LG GG Sbjct: 36 SSLKEHVIERITDGAGRTGRGLGGPVHKVVLLKDVAAEDTRRLSTANSEFDRVLG-GGFA 94 Query: 59 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLL 116 G +V I G GK+TL L +A G ++ E + + R +L V +++ Sbjct: 95 PGSLVLIGGDPGIGKSTLVLTTLATMNAAGVKALYVSGEESACQVKLRSERLNVSGSDMM 154 Query: 117 CSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 176 E LE A+ V+V+DS+ + A + + Sbjct: 155 LL----CETNLEKILEQAKEVKPQVLVIDSIQTVYKSDLSGTPG-------CATQLRECT 203 Query: 177 RKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVR-LDIRRIGAVKEG 235 L K S + I I + K G + G + + ++ R R + +K Sbjct: 204 LDLMVFAKNSGCITILIGHV-TKDGQIAGPRILEHMVDTVVYFEGDRNHQYRLLRTIKNR 262 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 ++ + + ++ + G Sbjct: 263 FGATDEIGVFEMTSHGLNPVLNPSKVFLQEG 293 >UniRef50_D2RJM6 DNA repair protein RadA n=2 Tax=Veillonellaceae RepID=D2RJM6_ACIFE Length = 457 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 104/312 (33%), Gaps = 45/312 (14%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 + L + + V+ ++TG D LG GG+ G ++ + G GK+T+TL V A Sbjct: 57 TPKTLKQVDRVKVQRMTTGIHEFDRVLG-GGIVPGSLILLGGAPGIGKSTITLDVSMKAA 115 Query: 86 REGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 G ++ E + A +LG D L L AR ++V Sbjct: 116 ARGARVLYVSGEESEAQTAMRAERLGQATDALQIMTATE----LGTILVQARQVKPRLLV 171 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DS+ + + + KL K++ +I I + K G + Sbjct: 172 IDSIQTMYNQELESAAGSVGQVRECTA-------KLLTFAKETGIAIIIIGHV-TKEGNI 223 Query: 204 FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 G + + + R R+ ++ +KN+ + + F + Sbjct: 224 AGPRLLEHMVDVVLQFEGDRSYTYRV---------------LRALKNRFGSTSECGIFSM 268 Query: 264 LYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKK 323 EG+ L ++ + +G+ TA ++ N EI+ Sbjct: 269 -EEEGLREVANPSGLFLEAREEAVSGS--------------VITAAMEGNRPILTEIQAL 313 Query: 324 VRELLLSNPNST 335 V P T Sbjct: 314 VSHTPFGLPRRT 325 >UniRef50_D1BB82 DNA repair protein radA n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BB82_SANKS Length = 473 Score = 138 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 101/322 (31%), Gaps = 41/322 (12%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 + + +GE + TG D LG GG+ G +V + G GK+T Sbjct: 56 KTVASAPTRSVAQPIGEIDVDSAQAAPTGISEFDRVLG-GGIVPGAVVLLAGEPGVGKST 114 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 135 L L V + R G+ +I E + + R +D + E L Sbjct: 115 LLLDVASTTARAGRRVLYITGEESAGQVRLRAERIDAL--APTLLLAAETDLGQVLGQIE 172 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 + D+++VDSV + G + + L K N ++ + Sbjct: 173 ATDPDLLIVDSVQTVASAQVDGSPGGVGQ-------VREVASALIAAAKGRNMPVVLVGH 225 Query: 196 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAP 255 + K G + G + + + R R+ V+ VKN+ Sbjct: 226 V-TKDGAVAGPRTLEHLVDVVLQFEGDRHSRLRM---------------VRAVKNRYGPT 269 Query: 256 FKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPE 315 + F++ GI + L + + G + L+ Sbjct: 270 DEVGCFELTED-GIAGLADPSGLFLSHINLAVPGTCVTVT--------------LEGRRP 314 Query: 316 TAKEIEKKVRELLLSNPNSTPD 337 A EI+ V L+NP T Sbjct: 315 LALEIQSLVVASPLANPRRTTS 336 >UniRef50_Q1IZ25 DNA repair protein radA n=8 Tax=Deinococci RepID=Q1IZ25_DEIGD Length = 449 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 103/266 (38%), Gaps = 33/266 (12%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 + L + + +G LD LG GGL G + I G GK+TL LQV Sbjct: 60 KLTPLSTVGRREEPRLPSGIPELDRVLG-GGLVAGSVTLIGGEPGIGKSTLLLQVADRLA 118 Query: 86 REGKTCAFIDAEHALDPIYARKLGVDI-DNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 R G+T ++ E +L+ I R +++ + ++ E AL + + +V Sbjct: 119 RNGQTVLYVAGEESLEQIRLRADRLNVTAEIQLTRDTRAEH----IAALMQEHRPALCIV 174 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DS+ +T +AE G + + ++++A K++ T + + + K G Sbjct: 175 DSIQTVTVEAEG-APGGVAQVREGTALLTRA-------AKETGTATVLVGHV-TKEGT-- 223 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 G ++ + + VG+ ++ VKN+ + F++ Sbjct: 224 -----VAGPKVMEHIVDTTVFL----------ETVGAFRLLRSVKNRFGQAGELGVFEMR 268 Query: 265 YGEGINFYGELVDLGVKEKLIEKAGA 290 GEG+ + E+ + G+ Sbjct: 269 -GEGLVAVENPSAAFLAERPVGVPGS 293 >UniRef50_B0R636 DNA repair and recombination protein radB n=4 Tax=Halobacteriaceae RepID=RADB_HALS3 Length = 236 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 24/244 (9%) Query: 35 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 94 D + TG +LD LG GG+ G + ++YGP ++GKT + L G ++ Sbjct: 2 REDDTHLPTGCGALDELLG-GGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAGGLAVYV 60 Query: 95 DAEH---ALDPIYARKLGVDID----NLLCSQPDTGEQALEICDALAR-SGAVDVIVVDS 146 D E A D + N++ S ++ + A + D+IVVDS Sbjct: 61 DTEGLSLARFQQLLEARATDPEAASANVIVSDAHDFDEQAQAVRDTADFADRADLIVVDS 120 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 V GD G A R ++ + L ++ + ++ NQ+ + + Sbjct: 121 VTGFYRL----ARGGDDTTGDALRQVADQITHLLSLARKHDLAVVVTNQVFTDVDND-SD 175 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 GG+ L + L + R G R + K++ + A+FQI G Sbjct: 176 RARPLGGHTLAHWTGTVLRLDRFR---------GGTRRATLEKHRAKPDGEHAQFQITDG 226 Query: 267 EGIN 270 GI+ Sbjct: 227 -GID 229 >UniRef50_A1SXY3 DNA repair protein radA n=5 Tax=Gammaproteobacteria RepID=A1SXY3_PSYIN Length = 470 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 114/305 (37%), Gaps = 43/305 (14%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 + R+ + + +STG LD LG GG+ +G +V I G SGKTTL L +A Sbjct: 65 SNGVQRISGVQIENATRVSTGLSELDRVLG-GGITLGSVVLISGDPGSGKTTL-LTKVAE 122 Query: 84 AQREGKTCAFIDAEHALDPIYAR-----KLGVDIDNLLCSQPDTGEQALEICDALARSGA 138 + + ++ AE +L R KL + DN L S D E ++ C Sbjct: 123 VMSQSMSTLYVTAEESLSQWAKRGIERLKLNFNEDNFLLSDTDCIEDIVDQCL----ENN 178 Query: 139 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 198 V ++ DS+ A G + + + A+++++ KQ LI + Q+ Sbjct: 179 VRFLIADSIQAFESNQAEGTAGGVTQVKICAKILNR-------LCKQHGITLILVGQVNK 231 Query: 199 KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQ 258 + G LK + I E S ++ KN+ + Sbjct: 232 NSQM--------AGPQTLKHIIDTAIHI---------EVNDASVRILRADKNRFGDTEQV 274 Query: 259 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAK 318 FQ+ + VD + L +G+ ++G I K A L + A Sbjct: 275 GIFQMTEKGMFS-----VDNPSRLFL---SGSEEHFEGSAISVIKDGARNLLIEIQALAT 326 Query: 319 EIEKK 323 E+E + Sbjct: 327 EVEGE 331 >UniRef50_B2KBD3 DNA repair protein radA n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBD3_ELUMP Length = 454 Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 109/313 (34%), Gaps = 45/313 (14%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 I+ L + +++ E TG LD LG GG+ G+++ + G GK+TL LQ A+ Sbjct: 56 EIINLSDTKTLREERELTGISELDRLLG-GGIVKGQLILLAGAPGIGKSTLMLQTAASLS 114 Query: 86 REGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 + GK +I E +L+ I A +LGV+ N+ + +E D + +V++ Sbjct: 115 K-GKKVLYISGEESLNQISSRALRLGVEGKNIFLLSETNMQNIIEALDKV----KPEVLI 169 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DS+ + + A L K T+L + + K G + Sbjct: 170 IDSIQTVYHPEFSSSPGTIGQVRECAAE-------LLRLCKPKGTVLFILGHV-TKDGEL 221 Query: 204 FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 G + + ++ + + +I R+ ++ KN+ + + FQ+ Sbjct: 222 AGPKVLEHMVDTVLYFDTEKDNILRL---------------LRPHKNRFGSTHEIGLFQM 266 Query: 264 LYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKK 323 V + G YS L+ E++ Sbjct: 267 TGHGLTPVEDASVYFAGNSRNKPLIGRAYSIA--------------LEGTRPILTEVQAL 312 Query: 324 VRELLLSNPNSTP 336 V P Sbjct: 313 VVPTRYPFPRRVS 325 >UniRef50_B3QT35 DNA repair protein radA n=4 Tax=Bacteria RepID=B3QT35_CHLT3 Length = 459 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 108/311 (34%), Gaps = 47/311 (15%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 R E ++ E +ST LD LG GGL +V + G GK+TL LQ+ A G Sbjct: 62 RFSELEDIEEERLSTRIEELDRVLG-GGLMTASVVLVGGEPGIGKSTLMLQLAANLV--G 118 Query: 89 KTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 K+ +I AE +L I A ++ + +++L E LE + DV++VDS Sbjct: 119 KSILYISAEESLHQIRNRAYRMNIRSEDILLV----SETQLENILDTVAAEKPDVLIVDS 174 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + + + KL K+ + I I K G + G Sbjct: 175 IQTIFSIGFESSPGTVTQVRECT-------SKLMHLAKREGITVFIIGHI-TKEGTIAGP 226 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 + + + RI ++ +KN+ + + F++ Sbjct: 227 KVLEHIVDTVLQFEGDNHYRYRI---------------LRALKNRFGSTNEIGVFEMTE- 270 Query: 267 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 G++ + + E+ +G+ A L+ EI+ V + Sbjct: 271 MGLSEVTNPSEAFLAERSFGVSGS--------------CVCASLEGARPLLVEIQALVSK 316 Query: 327 LLLSNPNSTPD 337 + P Sbjct: 317 TNYTVPQRISS 327 >UniRef50_Q4UL56 DNA repair protein radA homolog n=11 Tax=Rickettsia RepID=RADA_RICFE Length = 446 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 107/303 (35%), Gaps = 37/303 (12%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 I K K +L + + I T L+ LG GGL +G + I G GK+T Sbjct: 42 KAIVKTGSKQDFDKLSGHVAEQL-RIPTPIGELNRVLG-GGLVLGSAILIGGDPGIGKST 99 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLL--CSQPDTGEQALEICDAL 133 L LQ+ A+ C +I E +LD I R + +++ N E + +A Sbjct: 100 LLLQLAASNFASKMNCLYITGEESLDQIKLRAIRLNLTNYNTDILAATNLEDIIASIEA- 158 Query: 134 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 193 +D++V+DS+ +T K S + + A L KQ+N +++ Sbjct: 159 -NKNNIDLVVIDSIQTITTKELSSPPGTVSQIRICANE-------LVNYAKQNNIIILLS 210 Query: 194 NQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIA 253 + K G + G + + ++ + RI ++ KN+ Sbjct: 211 CHV-TKDGQLAGPKILEHLVDTVLYFEGDHNNHFRI---------------LRSYKNRFG 254 Query: 254 APFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDN 313 + F++ I V + L+++ G I G + L + Sbjct: 255 GVGEIGVFEMCGSGLIE-----VTNPSELFLMKREQN---VIGTSIFAGIEGSRPLLMEV 306 Query: 314 PET 316 Sbjct: 307 QAL 309 >UniRef50_A1RYZ3 Rad51-like protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RYZ3_THEPD Length = 315 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 102/261 (39%), Gaps = 32/261 (12%) Query: 28 MRLGEDRSMDVET--ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 +R E S + ++TG +LD L GGL I E G SGKT L Q+ AQ Sbjct: 70 VRGDEYASQLSQRESLTTGVKALDELL-EGGLVTQEIYEFAGEYGSGKTQLCHQLSVTAQ 128 Query: 86 RE------GKTCAFIDAEHALDPIY----ARKLGVD--IDNLLCSQPDTGEQALEICDAL 133 G ++D E P A + GV+ ++ + ++P + ++ E+ Sbjct: 129 LPPSRGGLGGKVVYVDTEGTFSPSRIERIAERFGVEGALEGVYVARPISVDELEELVIKG 188 Query: 134 AR---SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + G V ++V+DSV AL G + + + ++ A+ L + + ++ Sbjct: 189 LKPLLKGGVKLVVIDSVIALYRAQF----RGREWLAMRQQRINYALDWLKRLARVYSIVV 244 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 + NQ+ + GGN + ++ R +++ G ++V+ + Sbjct: 245 VITNQVVSVPSNWGVAVKLPAGGNIIAHASTHRFLMKK----------AGDSWLIEVLDS 294 Query: 251 KIAAPFKQAEFQILYGEGINF 271 A+F+I + Sbjct: 295 PRLPKGATAQFEIRDDGLGDV 315 >UniRef50_UPI00006CB33C hypothetical protein TTHERM_00459230 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB33C Length = 356 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 90/261 (34%), Gaps = 36/261 (13%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK--- 89 R + ISTGS +LD L GG+ I E YG SGKT + AQ + Sbjct: 103 QRRSQIRRISTGSKALDDILN-GGIESQSITEFYGEYRSGKTQIAHTACVLAQSQDHCQS 161 Query: 90 --TCAFIDAEHALDPIY----ARKLGVD----IDNLLCSQPDTGEQALEICDA----LAR 135 +ID E P A G++ + N++ + +Q + + Sbjct: 162 PGKVLYIDTEGTFRPERICQIASHYGMEGEYALSNIIYGRAYNVDQQNTLLIKGAQLMVE 221 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 ++VVDS+ A G + + + + M +L + N +I NQ Sbjct: 222 ENCFALLVVDSIMANFRC----DFSGRGDLSERQQALGKFMSRLQRMAAEFNIAVIITNQ 277 Query: 196 IRMKIGVMFG----NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 + GG+ L ++ RL +++ + +VK+V + Sbjct: 278 VMADPSGAMTGGAIPQPKPIGGHILAHASTQRLFMKKK---------TDNIRKVKLV-DS 327 Query: 252 IAAPFKQAEFQILYGEGINFY 272 K+ + + + Sbjct: 328 PYLQDKEVDIMVSDRGVGDVE 348 >UniRef50_C9LKY5 DNA repair protein radA n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKY5_9FIRM Length = 466 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 107/285 (37%), Gaps = 33/285 (11%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 +++E ++++ ++ + Q GK L + D + + G LD LG GG+ Sbjct: 33 SLEEKIEESIPKSIRTLSFQSGKE-PTSLTDIEIKDTDRVKLGITELDRPLG-GGIVSDS 90 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQ 119 ++ G GK+TL LQ+ + + GKT + E + I A +L V+ + Sbjct: 91 VILWGGEPGIGKSTLILQICDSFTKMGKTVLYCSGEESDIQIKMRAERLSVNTEECFVFA 150 Query: 120 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179 E L D L D++++DS+ + + + L Sbjct: 151 ESNLETILAEVDKL----HPDMVIIDSIQTTYLPNSSSAMGSPTQIRDCTAI-------L 199 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV 239 K+S +++ I + K G + G + + + R R+ Sbjct: 200 VKMAKESGIIVMIIGHV-TKEGNIAGPRILEHMVDVVFYLEGDRNYQFRV---------- 248 Query: 240 GSETRVKVVKNKIAAPFKQAEFQILYG--EGINFYGELVDLGVKE 282 ++ VKN+ + + F + +GI+ + + G++E Sbjct: 249 -----LRTVKNRFGSTSESGLFVMGRKGLKGIDDPSKYLLKGIQE 288 >UniRef50_Q5XDZ7 DNA repair protein radA homolog n=42 Tax=Bacteria RepID=RADA_STRP6 Length = 453 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 108/322 (33%), Gaps = 44/322 (13%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 ++ K ++L + ++ T + LG GG+ G ++ I G GK+T Sbjct: 45 ARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRVLG-GGVVPGSLILIGGDPGIGKST 103 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-DIDNLLCSQPDTGEQALEICDALA 134 L LQV +G ++ E + + I R + DIDN E ++ Sbjct: 104 LLLQVSTQLANKGT-VLYVSGEESAEQIKLRSERLGDIDNEFYLYA---ETNMQAIRTEI 159 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 + D +++DS+ + + S + + Q K +N + Sbjct: 160 ENIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQ-------LAKTNNIATFIVG 212 Query: 195 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 + K G + G + + ++ R RI ++ VKN+ + Sbjct: 213 HV-TKEGTLAGPRMLEHMVDTVLYFEGERHHTFRI---------------LRAVKNRFGS 256 Query: 255 PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP 314 + F++ G G+ + ++E+L G+ ++ + Sbjct: 257 TNEIGIFEMQSG-GLVEVLNPSQVFLEERLDGATGS--------------AVVVTMEGSR 301 Query: 315 ETAKEIEKKVRELLLSNPNSTP 336 E++ V + N T Sbjct: 302 PILAEVQSLVTPTVFGNARRTT 323 >UniRef50_Q0AUE9 DNA repair protein radA n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUE9_SYNWW Length = 451 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 97/273 (35%), Gaps = 32/273 (11%) Query: 8 QKALAAALGQ--IEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 L ++ + + + + + L + + D S+G D LG GG+ G ++ + Sbjct: 31 NSLLEESISNKPLRRTAERVAAIPLNQLSAEDSPRFSSGLSEFDRVLG-GGIVPGSLILL 89 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTG 123 G GK+TL LQV GK ++ E +L I R +LG++ D + Sbjct: 90 GGDPGIGKSTLLLQVAGLIAAAGKRILYLSGEESLQQIRLRASRLGINNDTIFLLN---- 145 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 EQ +++ D+I++DS+ + S + + + Q Sbjct: 146 EQDIDLLHEYINDLDPDLIIIDSIQTVYSSKLSSIPGSVSQLRESTAAVMQ-------IA 198 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 K+ + + + + K G + G + + ++ + R+ Sbjct: 199 KKMDKAVFLVGHV-TKDGSLAGPKVLEHIVDVVVYFEGEKNFSFRL-------------- 243 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELV 276 ++ KN+ A + A ++ + Sbjct: 244 -LRAAKNRFGATDEIALLEMSGQGLVEVPDPSY 275 >UniRef50_D2R9R3 DNA repair protein RadA n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9R3_GARVA Length = 495 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 104/317 (32%), Gaps = 38/317 (11%) Query: 25 GSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 84 S + E ++ D I TG D LG GGL G + I G GK+TL L+ A Sbjct: 82 TSAQPISEIQADDAMRIHTGFSEFDRVLG-GGLVPGSVTLIAGEPGIGKSTLLLKAAAYV 140 Query: 85 QREG-----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 139 ++ +I E + + R ++ N TG+ L+ L + Sbjct: 141 SKQSKESNTPPVLYISGEESAAQVKLRASRINAVNDYLLLATTGD--LDTVLDLIETHHP 198 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 + +VDS ++ + G + + + L K +N ++ + + K Sbjct: 199 TLAIVDSAQTISAQEVDGITGGSTQ-------VREVASALIDVAKANNIPILLVGHV-TK 250 Query: 200 IGVMFGNPETTTGGNALKFYAS-VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQ 258 G + G + + + + +R + A VKN+ + Sbjct: 251 DGSIAGPRTLEHLVDTVCQFEGDTQTALRMLRA----------------VKNRFGPTDEV 294 Query: 259 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAK 318 F + GEGI + L + G + T L+ + Sbjct: 295 GCFDMS-GEGIEEVPDPSGLFLSSTENANQGK----NAQDCTNDGTCVTFTLEGHRSLPI 349 Query: 319 EIEKKVRELLLSNPNST 335 EI+ V + L P Sbjct: 350 EIQALVTQSALPTPRRA 366 >UniRef50_B1X477 DNA repair protein RadA n=1 Tax=Paulinella chromatophora RepID=B1X477_PAUCH Length = 470 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 103/317 (32%), Gaps = 50/317 (15%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 + + + + VE +S+G D LG GG G +V + G GK+TL LQ A Sbjct: 62 PIDQVKELFVERLSSGYNEFDRVLG-GGFVPGSLVLVGGEPGIGKSTLLLQ-SAMIMSRY 119 Query: 89 KTCAFIDAEHALDP--IYARKLGV--DIDNLLCSQPDT-----GEQALEICDALARSGAV 139 + ++ AE + + R+L ++ N + E LEI +S Sbjct: 120 SSILYVSAEESAQQVKLRWRRLNECKNLTNFHQENKTSQLHLMAETELEIILQELQSFRP 179 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 V V+DS+ A+ S + + L KQ T ++ + + K Sbjct: 180 AVAVIDSIQAIYTSGLSSAPGSLSQVRECSLA-------LQKLAKQQGTAILLVGHV-TK 231 Query: 200 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQA 259 G G +A+ + R G+ ++ +KN+ A ++ Sbjct: 232 EGTFAGPKVLEHLVDAVITFEGDR---------------FGNNRLLRAIKNRFGANYELG 276 Query: 260 EFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKE 319 F++ + L+E + + G + E Sbjct: 277 VFEMG----------------NQGLVELTNPFEIFLGRNKATTGVATIVAYEGTRPLLVE 320 Query: 320 IEKKVRELLLSNPNSTP 336 ++ + NP Sbjct: 321 VQALINTANYGNPRRIT 337 >UniRef50_Q3LW29 DNA recombination and repair protein n=1 Tax=Bigelowiella natans RepID=Q3LW29_BIGNA Length = 331 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 102/282 (36%), Gaps = 39/282 (13%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 D +K L+ A ++ F ++ IST + ++D L GG+ + Sbjct: 59 DRKAEKILSLAKKRVPVGFST---LKNYLKTKKQQFHISTLNKTIDNLL-EGGIESSSVT 114 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHALDPIYA----RKLGVDID 113 EI+G +GKT + +A + +ID E P K ++ D Sbjct: 115 EIFGESKTGKTQFCHILCVSAMVDNYSFVQTKKVIYIDTEGNFRPERLIEISEKFKINFD 174 Query: 114 ----NLLCSQPDTGEQALEICDALARSG---AVDVIVVDSVAALTPKAEIEGEIGDSHMG 166 N+ ++ E ++ A A V +I+VDS AL + G + Sbjct: 175 FLINNVFYARAFNTEHQFQLLVAAASITAFSNVALIIVDSCTALLRTEYV----GRGELF 230 Query: 167 LAARMMSQAMRKLAGNLKQSNTLLIFINQIRM----KIGVMFGNPETTTGGNALKFYASV 222 L ++ + +R + ++ N ++ NQ+ + + GG+ + Y + Sbjct: 231 LRQTLLGKFLRNIQRLGEECNIAILLTNQVVTSNLDGMTFSAASNLKPIGGHIMAHYTNT 290 Query: 223 RLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 R+ +++ + V V + K+ +F I Sbjct: 291 RIWLKKRTSQYN----------VMKVISSSKLSEKEVKFIIQ 322 >UniRef50_Q215U8 DNA repair protein radA n=172 Tax=Alphaproteobacteria RepID=Q215U8_RHOPB Length = 503 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 108/319 (33%), Gaps = 44/319 (13%) Query: 19 EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 78 K+ G+ + S +S+G LD G GG G ++ + G GK+TL Sbjct: 66 SKRRGRAFKLESLTGTSEQAPRLSSGLGELDRVTG-GGFVRGSVLLVGGDPGIGKSTLLT 124 Query: 79 QVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARS 136 Q + REG +I E A+ + R +LG+ + + + E +I L+ Sbjct: 125 QATSLMAREGHRIVYISGEEAVAQVRLRATRLGLADAAVQLAAETSVE---DIITTLSEG 181 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 +IV+DS+ + + + +A+ + + K+S +I + + Sbjct: 182 AVPRLIVIDSIQTMWTDTVESAPGTVTQVRASAQALIRF-------AKKSGAAIILVGHV 234 Query: 197 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPF 256 K G + G +A+ + ++ VKN+ Sbjct: 235 -TKDGQIAGPRVVEHMVDAVLSFEG---------------EGSQQFRILRAVKNRFGPTD 278 Query: 257 KQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPET 316 + F++ G G+ +L + E+ + G A ++ Sbjct: 279 EIGVFEMT-GLGLREVANPSELFLSERDLGSPGT--------------AVFAGMEGTRPV 323 Query: 317 AKEIEKKVRELLLSNPNST 335 E++ V L P Sbjct: 324 LVELQALVVPTTLGTPRRA 342 >UniRef50_O83985 DNA repair protein radA homolog n=3 Tax=Treponema RepID=RADA_TREPA Length = 455 Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 100/270 (37%), Gaps = 24/270 (8%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 ++ +A+ A L R+ D + IS G D LG G + Sbjct: 39 SLSSGDVRAVKKASSS------PVQAFPLCAVRAQDAQRISCGIAEFDRVLGGGAVRRSA 92 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQ 119 I+ I G GK+TL LQ+ AA GK+ ++ E + I A +L + I N+ Sbjct: 93 IM-IGGEPGIGKSTLLLQIAAAC---GKSVLYVSGEESPGQIRGRADRLNIPIQNIELLC 148 Query: 120 PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL 179 E + + + ++VDS+ + + + + A L Sbjct: 149 ATRVED----VERVLNTRCPTFVIVDSIQTVFSPEAGAIPMTINQLKYCANE-------L 197 Query: 180 AGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVV 239 +K+ +++L F + K G + G + + + DIR + A+K V Sbjct: 198 IAWVKERDSVLFFTAHV-TKDGNIAGPKVVEHMVDTVISFERNEEDIRFLRALKNRFGSV 256 Query: 240 GSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 + +N ++A A F I +G+ Sbjct: 257 DELGIFTMGENGLSAVQDTAGFFISTRQGM 286 >UniRef50_P24517 DNA repair protein radA n=551 Tax=cellular organisms RepID=RADA_SALTY Length = 460 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 108/327 (33%), Gaps = 46/327 (14%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 L G + +L + ++ STG D LG GG+ G + I G + Sbjct: 48 NERLSGYAGSAGVSKVQKLSDISLEELPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGA 106 Query: 72 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEI 129 GK+TL LQ + + ++ E +L + A +LG+ NL + EQ Sbjct: 107 GKSTLLLQTLCKLAEQ-MKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQ---- 161 Query: 130 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 189 +A ++V+DS+ + + + A +++ K Sbjct: 162 ICLIAEEEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRF-------AKTRGVA 214 Query: 190 LIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVK 249 ++ + + K G + G L+ + + + ++ K Sbjct: 215 IVMVGHV-TKDGSL-------AGPKVLEHCIDCSVLL--------DGDADSRFRTLRSHK 258 Query: 250 NKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAW 309 N+ A + F + + + A + +G+++ G + W Sbjct: 259 NRFGAVNELGVFAMTEQG--------------LREVSNPSAIFLSRGDEVTSGSSVMVVW 304 Query: 310 LKDNPETAKEIEKKVRELLLSNPNSTP 336 + EI+ V +++NP Sbjct: 305 -EGTRPLLVEIQALVDHSMMANPRRVA 330 >UniRef50_Q8K8Q1 DNA repair protein radA homolog n=197 Tax=Bacteria RepID=RADA_STRP3 Length = 453 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 44/322 (13%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 ++ K ++L + ++ T + LG GG+ G ++ I G GK+T Sbjct: 45 ARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRVLG-GGVVPGSLILIGGDPGIGKST 103 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-DIDNLLCSQPDTGEQALEICDALA 134 L LQV +G + E + + I R + DIDN E ++ Sbjct: 104 LLLQVSTQLANKGT-VLYASGEESAEQIKLRSERLGDIDNEFYLYA---ETNMQAIRTEI 159 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 + D +++DS+ + + S + + Q K +N + Sbjct: 160 ENIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQ-------LAKTNNIATFIVG 212 Query: 195 QIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 + K G + G + + ++ R RI ++ VKN+ + Sbjct: 213 HV-TKEGTLAGPRMLEHMVDTVLYFEGERHHTFRI---------------LRAVKNRFGS 256 Query: 255 PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNP 314 + F++ G G+ + ++E+L G+ ++ + Sbjct: 257 TNEIGIFEMQSG-GLVEVLNPSQVFLEERLDGATGS--------------AVVVTMEGSR 301 Query: 315 ETAKEIEKKVRELLLSNPNSTP 336 E++ V + N T Sbjct: 302 PILAEVQSLVTPTVFGNARRTT 323 >UniRef50_A5UKT8 DNA repair and recombination protein radB n=4 Tax=Methanobrevibacter RepID=RADB_METS3 Length = 234 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 27/244 (11%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 D I T + +D L GG+ G + +I+GP SGK+ ++L + ++GK ++D Sbjct: 8 EDNHKIPT-NSGIDNLL-DGGVEKGTVTQIFGPPGSGKSNISLVLAVNVAKQGKKVVYVD 65 Query: 96 AEHALDPIYARKL-GVDI----DNLLCSQPDTGEQA---LEICDALAR--SGAVDVIVVD 145 E + +++ G D +N++ +P + + L+ + R VD+ V+D Sbjct: 66 TEGGISINRIKQIAGEDFPKIVNNIIVFEPTSFLEQNENLKTIELWIRKHHDDVDLCVLD 125 Query: 146 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205 S AL +++ + + + M LA + + ++ NQI Sbjct: 126 SAVALYRVDDMKSS-------RLNKELGKQMGILAKIARNYDVAVVLTNQIYSSFDDDNK 178 Query: 206 NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILY 265 + GG L++++ + + R N ++ + +++ KQA F+I+ Sbjct: 179 DVVKAVGGTILQYWSKTIIQLER--------NDEFNKRVATLKRHRSIGEGKQATFKIVE 230 Query: 266 GEGI 269 I Sbjct: 231 RGII 234 >UniRef50_C1A917 DNA repair protein radA n=2 Tax=Bacteria RepID=C1A917_GEMAT Length = 465 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 54/313 (17%), Positives = 102/313 (32%), Gaps = 42/313 (13%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 + LG S D TG D LG GG+ G +V + G GK+TL LQV A + Sbjct: 60 VTLGSVTSSDTPRWRTGLDEFDFVLG-GGIVPGSMVLVGGEPGIGKSTLLLQVAARLEAA 118 Query: 88 GKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSG-AVDVIVV 144 G+ ++ E + + R +L D + + E L G V ++V Sbjct: 119 GQATLYVSGEESALQVRLRAERLAEDASAVSLLTETSLETILATAAQPTGDGRPVRALIV 178 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DS+ + + + A +L K S T + I + K G + Sbjct: 179 DSIQTVHTELLEGAPGNVGQVRECAA-------RLMRFAKDSGTTVFVIGHV-TKGGGIA 230 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 G + + ++ R+ ++ KN+ + + F+++ Sbjct: 231 GPKTLEHIVDTVLYFEGDSTLDHRV---------------LRATKNRFGSVDEIGVFRMV 275 Query: 265 YGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKV 324 G+ L V ++ +G+ A ++ E++ Sbjct: 276 -STGLIPVDNPSALFVGDRREVASGS--------------AVCALMEGTRPVLVEVQALA 320 Query: 325 RELLLSNPNSTPD 337 + P + Sbjct: 321 AKAGFGTPQRVAN 333 >UniRef50_B9L413 RecA protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L413_THERP Length = 357 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 64/278 (23%), Positives = 118/278 (42%), Gaps = 26/278 (9%) Query: 58 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLC 117 P GR++E+ GP SGK TL + + QR G A++DA H++D GV + +LL Sbjct: 98 PRGRLIELAGPTYSGKRTLAGWFVRSVQRAGGWVAYLDAAHSVDFDRLHHWGVAVLDLLV 157 Query: 118 SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 177 + P + +ALE+ L SGA+D++V+D L ++ + + +R Sbjct: 158 ALPQSVTEALELARLLVLSGALDLVVLDLPPHLALRS----------------ALDRGLR 201 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEN 237 +L L+ T + +R ++ P T L+ + R G + Sbjct: 202 QLRPLLRGLPTAFVV---VRDRVDT----PALATAQVRLRLEPLT--QLVRPGPLAAQAL 252 Query: 238 VVGSETRVKVVKNKIAAP-FKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKG 296 G V++ + + P ++ EG+ E +DLG+ +I + Sbjct: 253 PEGLRVHVRIERGPLWPPRDPPVPIELCLREGVRVALERIDLGLALGVIRLHSLGLVFAE 312 Query: 297 EKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS 334 +G+ + A L+ +P ++E+++R LS S Sbjct: 313 TVLGRTRERAAVRLQSDPSLWSQLEEEIRVRWLSGDRS 350 >UniRef50_UPI0001793527 PREDICTED: similar to X-ray repair complementing defective repair in Chinese hamster cells 3 n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793527 Length = 321 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 101/295 (34%), Gaps = 48/295 (16%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 K K A ++ S + + + ++TG +D LG GGL I EI Sbjct: 44 KKVKLTVVATHRVFIAAANISASNVKCHQEPNNHILTTGCKQIDKLLG-GGLFKYGITEI 102 Query: 66 YGPESSGKTTLTLQVIAAAQRE----GKT--CAFIDAEHALDPIYARKL----------- 108 G GKT LQ+ Q G A+I E +++ Sbjct: 103 SGESGCGKTQFCLQIALTVQLPLSLKGAKSGAAYICTEDRFPSSRIQQMISNIRFKYQCD 162 Query: 109 -GVDI---------DNLLCSQPDTGEQALEICDALAR----SGAVDVIVVDSVAALTPKA 154 +D+ DN+L S T E + + + +IV+DS+ A+ Sbjct: 163 SKIDMNELCQTDYGDNILISHIATVEDLKKCIHEMLPRVLLHRPIKLIVIDSITAVFR-- 220 Query: 155 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 214 GE S + +R + L + +I +NQ+ I + GN + G Sbjct: 221 ---GEYTPSEVPRRSRDLRDIAVFLHKLSVEHGLWIICVNQVTSSISDIGGNKLVPSLGL 277 Query: 215 ALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 A + RL + + + + ++V+ + AP F++ + Sbjct: 278 AWANLVTTRLMMSKTHSSRY----------IEVMFSPHTAP-TTIPFRVTEQGIV 321 >UniRef50_Q12U80 DNA repair and recombination protein radB n=8 Tax=Archaea RepID=RADB_METBU Length = 225 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 25/235 (10%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E + + LD LG GG G + +I+G SGKT + LQ+ ++GK FID E Sbjct: 6 EQLLSSCKPLDELLG-GGFESGVVTQIFGEAGSGKTNICLQLAIECVKKGKKAIFIDTEG 64 Query: 99 ALDPIYARKLGVDIDN-----LLCSQPDTGEQALEICD--ALARSGAVDVIVVDSVAALT 151 L +++ + ++ +P + E+ + V VI+VDS A Sbjct: 65 -LSADRFKQIAGENARKIAQDIIIFEPHSFEEQYSAVRETEKISTENVGVIIVDSATAYY 123 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 211 + + R +S + L ++ + +++ NQ+ I N Sbjct: 124 RFELDDEDSSIRTR----RELSNQIGFLHSLARKRDIVVVITNQVYSDIKS---NSLKPI 176 Query: 212 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 GG++L+ + + + + G R K+ K++ EF I Sbjct: 177 GGSSLEHISKTIIQLEKTGT---------GSRRAKIWKHRSRPEGTTCEFTITAD 222 >UniRef50_B2A4A3 DNA repair protein radA n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A4A3_NATTJ Length = 456 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 103/311 (33%), Gaps = 46/311 (14%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 ++ L E +ST LD LG GG+ G +V G GK+TL LQ Sbjct: 60 VITLSEIDLEKEPRMSTSIDELDRVLG-GGIVPGSVVLFGGDPGIGKSTLMLQASHNLDT 118 Query: 87 EGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 + ++ E +L + R +LG++ ++LL + L + ++++ Sbjct: 119 LNFSTLYVSGEESLSQLKLRCERLGLNSESLLFASITD----LRELENRLNEQKPQILII 174 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DS+ +L S + A + L K++ + + + K G + Sbjct: 175 DSIQSLYTPEIEAPPGSLSQVKHCAAV-------LHSVAKENEIACLIVGHV-TKAGQIA 226 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 G + + ++ RI ++ +KN+ P + F++ Sbjct: 227 GPKVLEHIVDTVLYFEGDHHQDYRI---------------LRSIKNRFG-PIEIGVFEMR 270 Query: 265 YGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKV 324 G+ L ++++ G+ L+ EI+ V Sbjct: 271 Q-TGLQEITNPSKLFLRKRPDYTVGS--------------AILPSLEGTRAFLVEIQALV 315 Query: 325 RELLLSNPNST 335 L P Sbjct: 316 STSQLGTPRRV 326 >UniRef50_B5IA62 DNA repair and recombination protein RadB n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IA62_9EURY Length = 234 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 51/242 (21%), Positives = 88/242 (36%), Gaps = 24/242 (9%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 V+ I +G S+D L GG G I E+YG SGKT + L +EG +ID E Sbjct: 8 VDKIKSGCESIDSLLN-GGFERGCITELYGEAGSGKTNICLSTAINVAKEGHYVIYIDTE 66 Query: 98 HALDPIYARKLGVDID---NLLCSQPDTGEQALEICDALA----RSGAVDVIVVDSVAAL 150 + +LG + D +L + Q EI + + + +++VDS+ Sbjct: 67 G-ISMERFSQLGGNEDIAKRILFYKVYKFSQQAEIIERAINLVEKRNDIILLIVDSMTEF 125 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 E + + ++ + L ++ N +I NQ+ M Sbjct: 126 YRA---ERGVEEDLSAKKRSSLAWQLSILNSIARKKNIAVIITNQVYMDT---TTKELRP 179 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 GG+ L A + +R+IG + +K++ +A F I Sbjct: 180 IGGHTLHHNAKTIIFLRKIGNGYREALL---------IKHRSLPEGIKARFIIGSDGLYP 230 Query: 271 FY 272 Sbjct: 231 EE 232 >UniRef50_A8MLV2 DNA repair protein radA n=35 Tax=Clostridiaceae RepID=A8MLV2_ALKOO Length = 456 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 102/335 (30%), Gaps = 52/335 (15%) Query: 11 LAAALGQIEKQFGKG-------SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 + + + +K F + + E +S E T L+ LG GGL G + Sbjct: 33 MEEEMLESKKDFKRSPTIVSQSKPQPIKEVKSGAYERYDTQINELNRVLG-GGLVKGSLT 91 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPD 121 I G GK+TL LQ + ++ E + + I R +L D+L Sbjct: 92 LITGEPGIGKSTLILQASSTIANRYGKTLYVSGEESEEQIKMRGERLNSLSDDLYIV--- 148 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 E +++ + A I++DS+ L + S + A L Sbjct: 149 -SETNVDVIEKYIEEYAPVFIIIDSIQTLFKEDLSSAPGSVSQVKECA-------NNLMR 200 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 K N + + + K G + G + + + R RI Sbjct: 201 IGKSKNIPMFIVAHV-TKQGELAGPRVLEHMVDTVLHFEGERTQEFRI------------ 247 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 ++ +KN+ + F++ G+ + ++ E GA Sbjct: 248 ---LRALKNRFGTTSEIGVFEMREE-GLVEVSNPSAMFLESLSTEAEGAI---------- 293 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 336 ++ EI+ V P Sbjct: 294 ----VVVTVEGTRPLLVEIQALVAPTNAGFPRRAA 324 >UniRef50_B9KHP2 DNA repair protein radA n=8 Tax=Rickettsiales RepID=B9KHP2_ANAMF Length = 456 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 110/310 (35%), Gaps = 42/310 (13%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 +M + V + G+ LD LG GG+ G + I G GK+TL LQV A+ Sbjct: 60 VMPICGSSVEPVHRLCVGNDELDRVLG-GGIVAGSSILIGGEPGIGKSTLMLQVFASLAG 118 Query: 87 EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 + +C ++ E ++ I AR +++ T +L A + +V+DS Sbjct: 119 QSHSCLYVSGEESVAQIRARATRLNVSEPQIKLVATS--SLSSVLNAACADNFAFLVIDS 176 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + + + + A KL KQ N L + QI K G + G Sbjct: 177 IQTMHDEEIPSSPGTVLQVRMCA-------HKLIMLAKQRNIGLFLLGQI-TKDGAIAGP 228 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV-KVVKNKIAAPFKQAEFQILY 265 + + ++ G++ R+ + +KN+ + F++ Sbjct: 229 KTLEHLVDTVLYFEGSN----------------GNQLRILRTIKNRFGPANEMGVFEMS- 271 Query: 266 GEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVR 325 G G+ + L + + + G G + G ++ + E++ + Sbjct: 272 GSGLLPVQDPSMLFLGQS--PRKG----ITGNVVFAG-------MEGSRPILVEVQSLIA 318 Query: 326 ELLLSNPNST 335 +P Sbjct: 319 NTYSPSPRRA 328 >UniRef50_A8G2D8 DNA repair protein radA n=7 Tax=Prochlorococcus marinus RepID=A8G2D8_PROM2 Length = 453 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 113/333 (33%), Gaps = 48/333 (14%) Query: 6 NKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 + K + ++ + E S + ++G +D LG GG+ G +V + Sbjct: 35 EEIKIKRSKYQDLKDIKNSKKSIPFNEISSKKISRFTSGFKEIDRVLG-GGIVPGSVVLL 93 Query: 66 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTG 123 G GK+T+ LQ + ++ AE +L+ I +L D + L Sbjct: 94 GGEPGIGKSTIVLQSAGKISL-NEKVLYVTAEESLEQVKIRWERLNQDSNELKIF----A 148 Query: 124 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 E L + +S ++DS+ A+ S + + L Sbjct: 149 ETNLSLIMEEIKSVNPSFAIIDSIQAIHNHEMESSPGSVSQVRACSSE-------LQNLA 201 Query: 184 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 K +N L+ I + K G + G + + + ++ R+ Sbjct: 202 KNNNISLLIIGHV-TKDGALAGPKTLEHLVDVVINFEGDKVSSHRL-------------- 246 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGK 303 ++ +KN+ + F+ F++L +G+ + ++ I + +G + Sbjct: 247 -LRSIKNRFGSTFEIGIFEMLE-KGLVEVKNPSSIFTNKENISGVTTTITNEGSR----- 299 Query: 304 ANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 336 A +I+ V + SNP T Sbjct: 300 -----------PFAVDIQALVNKTFYSNPRRTT 321 >UniRef50_A8L2Z2 RecA domain protein n=1 Tax=Frankia sp. EAN1pec RepID=A8L2Z2_FRASN Length = 274 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 94/137 (68%), Gaps = 4/137 (2%) Query: 213 GNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 272 + +F VR D+RRI +K+G+ V + TRVKVV+NK+A PF+ AEF I+YG GI+ Sbjct: 25 QPSCRFSQPVRHDVRRIETLKDGQEAVANRTRVKVVRNKMAPPFRMAEFDIVYGGGISRE 84 Query: 273 GELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNP 332 G L+D+GV+ +I K+GAWY+ G+++GQGK NA ++L+DNP+ A E EK+++E L +P Sbjct: 85 GSLIDMGVEHTIIRKSGAWYTDDGDQLGQGKENARSFLRDNPDLANETEKRIKEKLGLSP 144 Query: 333 ----NSTPDFSVDDSEG 345 ++ P +VD G Sbjct: 145 TLDADAPPPVAVDFWPG 161 >UniRef50_Q9PK96 DNA repair protein radA homolog n=20 Tax=Bacteria RepID=RADA_CHLMU Length = 455 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 49/313 (15%), Positives = 103/313 (32%), Gaps = 45/313 (14%) Query: 22 FGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 81 + + L + + IST S + LG GG G + + G GK+TL LQ+ Sbjct: 51 LSSTTPVPLNTVKFQEEIRISTRSKGWNRLLG-GGTVCGSLTLLGGEPGIGKSTLLLQIS 109 Query: 82 AAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 139 + +G ++ E ++ + A++L + N+ E + LA Sbjct: 110 SQFAEQGYKVLYVCGEESVSQTSLRAQRLQISSSNIFLFPETNLEDIKQQISDLA----P 165 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 D++++DS+ + + + + L KQ I + K Sbjct: 166 DILIIDSIQIIFSPSLSSAPGSVAQVRETTAE-------LMHIAKQKQITTFIIGHV-TK 217 Query: 200 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQA 259 G + G + + ++ R+ ++ VKN+ + Sbjct: 218 SGEIAGPRILEHLVDTVLYFEGNAHTNYRM---------------IRSVKNRFGPTNELL 262 Query: 260 EFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKE 319 + G++ ++EK++E G+ ++ + E Sbjct: 263 ILSMQTD-GLHEVENPSGFFLQEKVVETTGS--------------TIIPIVEGSETLLVE 307 Query: 320 IEKKVRELLLSNP 332 ++ V SNP Sbjct: 308 VQALVSSSPFSNP 320 >UniRef50_A6R196 DNA repair protein RAD51 n=3 Tax=Eukaryota RepID=A6R196_AJECN Length = 297 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 87/247 (35%), Gaps = 55/247 (22%) Query: 44 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 97 GS LD L AGG+ G I EI+G +GK+ + + Q C +ID E Sbjct: 79 GSKQLDTLL-AGGIETGSITEIFGEFRTGKSQICHTLAVTCQLPFDMGGGEGKCLYIDTE 137 Query: 98 HALDPIY----ARKLGV----DIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 149 P A++ G+ +DN+ ++ + L++ + ++ Sbjct: 138 GTFRPTRLLAVAQRYGLVGDEVLDNIAYARAYNSDHQLQLLNQASQMMC----------- 186 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV-----MF 204 + +++ MRKL + ++ NQ+ ++ Sbjct: 187 --------------ELSSRQNHLAKFMRKLRTLADEFGIAVVITNQVVAQVDGGPSAMFN 232 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 +P+ GGN + ++ RL +++ ETR+ + + P F I Sbjct: 233 PDPKKPIGGNIIAHASTTRLSLKKGR----------GETRICKIYDSPCLPESDCLFAIN 282 Query: 265 YGEGINF 271 G + Sbjct: 283 EGGIGDP 289 >UniRef50_Q8SZF1 RE02671p n=28 Tax=Drosophila RepID=Q8SZF1_DROME Length = 341 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 87/253 (34%), Gaps = 36/253 (14%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAF 93 +S G +LD G GG+ I E+ G GKT L LQ+ Q GK A+ Sbjct: 87 RVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTELLLQLSLCVQLPRELGGLGKGVAY 145 Query: 94 IDAEHALDPIYARKLGVD------------IDNLLCSQPDTGEQAL----EICDALARSG 137 I E + ++ + N+ E L L + Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205 Query: 138 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 197 + +I++DSVAA+ + AR M + L + N ++ +NQ+ Sbjct: 206 GIGLIIIDSVAAIFRLY--------NDYLERARHMRRLADALLSYADKYNCAVVCVNQVA 257 Query: 198 MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFK 257 + G E G RL + R+ + + + +++++ + Sbjct: 258 TRDGQD----EIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLITVRKLEILYSPETPNDF 313 Query: 258 QAEFQILYGEGIN 270 AEF I +N Sbjct: 314 -AEFLITAEGVVN 325 >UniRef50_B7KLK4 DNA repair protein radA n=14 Tax=Bacteria RepID=B7KLK4_CYAP7 Length = 520 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 90/276 (32%), Gaps = 56/276 (20%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 +R + + ++G LD LG GG+ G +V I G GK+TL LQV + Sbjct: 70 LRFSQITQEEQARFASGYGELDRVLG-GGIVPGSLVLIGGDPGIGKSTLLLQVANRLSQR 128 Query: 88 GKTCAFIDAEHALDPI--YARKLGV---------------------------DIDNLLCS 118 ++ AE + + A++LGV + DN L Sbjct: 129 LPRILYVSAEESGQQVKLRAQRLGVGVVETPPEESENGKGKKRNKSTQKDLNNADNNLYV 188 Query: 119 QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 178 P E LE S V+DS+ L A + + + Q Sbjct: 189 LP---ETDLEEILRELESLKPQAAVIDSIQTLYFAALTSAPGSVAQVRECTSALMQV--- 242 Query: 179 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 K+ N L + + K G + G + + ++ R R+ Sbjct: 243 ----AKRENITLFIVGHV-TKEGAIAGPRVLEHLVDTVLYFEGDRYASHRL--------- 288 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 ++ VKN+ A + F+++ + Sbjct: 289 ------LRSVKNRFGATHEIGIFEMVDKGLVEVENP 318 >UniRef50_O28184 DNA repair and recombination protein radB n=3 Tax=Archaeoglobaceae RepID=RADB_ARCFU Length = 221 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 26/232 (11%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I TGS +D LG GG+ G + +IYG +GKTTL L + A + A+ID E L Sbjct: 6 IPTGSKCIDSLLG-GGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQ-FKVAYIDTEG-L 62 Query: 101 DPIYARKLGVD---IDNLLCSQPDTGEQA---LEICDALARSGAVDVIVVDSVAALTPKA 154 R++ D N+ + Q ++ + L RS V +++VD +L Sbjct: 63 SGERVRQIFGDERLFSNVFVYEVYRFRQQGVAIQEAEKLCRSEKVKLVIVDCFTSLYRSE 122 Query: 155 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGN 214 + + + R ++ + L G ++ + ++ NQ+ +G GG Sbjct: 123 LEDDR---KQIKIK-RELTSQLTFLLGMARKYDVAVVITNQMFTDVGSGVDR---PLGGP 175 Query: 215 ALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 +L+ + V + + R + + ++K++ K ++I Sbjct: 176 SLEHLSKVIIALERSNEL----------RKATLIKHRWMKEGKSCFYRITDR 217 >UniRef50_A8N2F5 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N2F5_COPC7 Length = 249 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 109/283 (38%), Gaps = 58/283 (20%) Query: 3 IDENKQKALAAALGQIE-KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 + E K + + A +I F G + +D+ V ISTGS +D LG GG+ Sbjct: 1 MSEAKVEKIKEAAQKIHGSSFATGVEI---QDKRKRVLVISTGSKLVDGILG-GGVMSQS 56 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAEHALDPIYAR----KLGVD 111 I E+YG +GKT L + AQ + A+ID E P R + GVD Sbjct: 57 ITEVYGEYRTGKTQLAHTMSVVAQLPPEYGGAAGKVAYIDTEGTFRPDRIRAIADRFGVD 116 Query: 112 ----IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL 167 ++N+L ++ E +E+ + + A D Sbjct: 117 GTMALENILYARAFNSEHQMELINECSARFAED-------------------------KD 151 Query: 168 AARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF----GNPETTTGGNALKFYASVR 223 +++Q + KL ++ N ++ NQ++ G G GG+ L ++ R Sbjct: 152 FRLLLAQMLSKLTKLSEEFNIAVLMTNQVQSDPGATMTFVAGGALKPIGGHILSHASATR 211 Query: 224 LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 + +R+ A E RV + + P +A +++ G Sbjct: 212 IFLRKGRA----------EERVAKLVDSPDRPESEASYKLDEG 244 >UniRef50_B0KVD6 DNA repair protein radA n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVD6_9BACT Length = 440 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 107/296 (36%), Gaps = 46/296 (15%) Query: 44 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP- 102 G D LG GG G++V + G GK+T+ ++ + ++ E ++D Sbjct: 75 GIGEFDRVLG-GGFVPGQVVLLAGEPGIGKSTILTEIAKNL--KDLKVLYVCGEESVDQI 131 Query: 103 -IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 161 I ++G + +NLL + ++ D + +++VDSV L + + Sbjct: 132 KIRVSRMGYNAENLLVLPETNVDIIVDNID---EKKEIGLVIVDSVQTLFSEELLGSPGS 188 Query: 162 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYAS 221 + +++ L K++N ++ + + K GV+ G + + + Sbjct: 189 LVQVRGCSQI-------LTNTAKKTNIPIVLVGHV-TKGGVVAGPKVLEHIVDTILYLEG 240 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVK 281 + RI ++ KN+ A + F+++ GI +L +K Sbjct: 241 DSQHLFRI---------------LRTSKNRFGAVSEVGIFEMV-DNGIREVKNPSELFLK 284 Query: 282 EKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPD 337 ++L++ G+ T ++ N EI+ P T Sbjct: 285 QRLLKSPGS--------------CVTVVMEGNRPLLFEIQALTVPTSFGYPRRTSS 326 >UniRef50_C0R005 DNA repair protein radA n=2 Tax=Brachyspira RepID=C0R005_BRAHW Length = 462 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 94/273 (34%), Gaps = 33/273 (12%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 ++ K++ K S+ L + ++ D IST L+ LG GG+ G ++ Sbjct: 41 SQDSNKSIRERTSTSSSD--KASLTPLKKIKTNDRTRISTNIDELNRVLG-GGIVQGSVI 97 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPD 121 I G GK+TL LQ + + + + E +L+ I A +L ++ + L S Sbjct: 98 LIGGEPGIGKSTLLLQTASNIAK-NEKVYYFTGEESLEQIKLRADRLTLEDSDFLISSES 156 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 + + + ++DS+ + + + + A + Q Sbjct: 157 NCDNIINTLL----DDTPSLAIIDSIQTIYSPSTNSIAGSPAQIKNCAWALMQ------- 205 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 K N + + I K G + G + + ++ + G Sbjct: 206 TAKLKNITIFLVGHI-TKEGTIAGPKILEHIVDCVLYFEG---------------DDKGI 249 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGE 274 ++ VKN+ A + F++ + Sbjct: 250 YRILRAVKNRYGAVDEVGIFEMAEKGLMEVKDP 282 >UniRef50_A0NCA9 AGAP003791-PA n=1 Tax=Anopheles gambiae RepID=A0NCA9_ANOGA Length = 290 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 100/300 (33%), Gaps = 59/300 (19%) Query: 22 FGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 81 F K ++ E+ + + T LD+ALG+ G+P G I E+ GP SGKT L LQ+ Sbjct: 2 FKKSALDWWREEEART--GLVTFCRDLDLALGS-GIPEGMITELCGPPGSGKTQLCLQLA 58 Query: 82 AAAQREGK------TCAFIDAEHALDPIYARKL--------------------------- 108 Q + ++D + P +++ Sbjct: 59 VNVQIPQQLGGLQGRAVYLDTNYGFFPQRVQEMAKACHNHCANIALLHKLNPEETLAGFS 118 Query: 109 -GVDIDNLLCSQPDTGEQALEIC----DALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 163 +DN+L S Q LE + L + +IV+DS++ L Sbjct: 119 EATALDNILYSHVTNCTQILEAIAVLQNRLYDGEKIKLIVLDSLSFLIRNTNTRS----- 173 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG--------NPETTTGGNA 215 + + + + L + ++I N + +I + G G + Sbjct: 174 --MKRVKRVHEILTLLHKLAHRFGCVVIVTNDVTTRISDVDGGGGERPDVPQIVPALGGS 231 Query: 216 LKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG--EGINFYG 273 L + R+ + R + + ++ + K P F+I G+ G Sbjct: 232 LTHKVNQRIFLGRDESHFDAQSQAPPSYVASIEK-GHFLPSVTVAFRIEPAGIRGVKREG 290 >UniRef50_Q18FI4 DNA repair and recombination protein RadB n=2 Tax=Halobacteriaceae RepID=Q18FI4_HALWD Length = 257 Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 85/264 (32%), Gaps = 46/264 (17%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 +STG SLD LG GG G + ++YGP ++GKT + L ++D E + Sbjct: 5 LSTGCQSLDSLLG-GGFERGTVTQVYGPPAAGKTNIMLSAALHTAATDSMAVYVDTEG-I 62 Query: 101 DPIYARKLG-------------VDIDNLLCSQPDTGEQALEICDALAR-SGAVDVIVVDS 146 R++ ++ S E A + D+I++DS Sbjct: 63 SSDRFRQIADGVVDDSSSVDRDSLTSQVIMSDAHDFEAQATAVRDTAEFANRADLIILDS 122 Query: 147 VAALTPKAEIEGEIGDSHMGLA------------------ARMMSQAMRKLAGNLKQSNT 188 G ++++G R ++ + L ++ N Sbjct: 123 ATGFYRLQRTLGGTLENNIGTDGASSENTERTETADGGDTLRRLTSQITHLLSLARKHNL 182 Query: 189 LLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVV 248 ++ NQ+ + GG L+ + L + R G + R + Sbjct: 183 AVVITNQVFTDPDT---DRVRPLGGYTLEHWTGAVLRLERFR---------GGKRRATLE 230 Query: 249 KNKIAAPFKQAEFQILYGEGINFY 272 K++ + F I + Sbjct: 231 KHRSKPTGESVTFVITDTGVADHE 254 >UniRef50_UPI0000586FDE PREDICTED: similar to RAD51L2/RAD51C protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000586FDE Length = 425 Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 92/272 (33%), Gaps = 49/272 (18%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----- 87 + + I T LD LG GG+PM +I EI G GKT +Q+ Q Sbjct: 115 QKEQSLPPIITFCEELDEMLG-GGVPMCKITEICGAPGVGKTQTCIQLCVDVQIPASLGG 173 Query: 88 -GKTCAFIDAEHALDPIYA-----------RKLGVD-----------IDNLLCSQPDTGE 124 +ID E + P A +G + + + Sbjct: 174 VEGEAVYIDTEGSFIPQRAWGIAQAATEHCHTMGDQAELKDFTTEKILSGIHYFRCHNHV 233 Query: 125 QALEIC----DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 + L + + L+++ V +I+VDS+A + M L R+++ + Sbjct: 234 ELLALVNLLPEFLSKNPKVKLIIVDSIAFHFRHDFDD-------MSLRTRLLNGLAQNFI 286 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIR-----RIGAVKEG 235 Q N ++ NQ+ KIG + G + ++R+ + R + + Sbjct: 287 RIATQYNLAVVLTNQMTTKIGE-GTSHLIPALGESWGHACTIRVILYWKQAQRYANLYKS 345 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYGE 267 + + ++ ++ P A + Sbjct: 346 PSKQEATVPYQIT---VSDPQSHASMLLKLEC 374 >UniRef50_B0RY20 DNA repair protein radA n=15 Tax=Gammaproteobacteria RepID=B0RY20_XANCB Length = 463 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 98/266 (36%), Gaps = 30/266 (11%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 I L + + + +STG D LG GGL G +V I G GK+TL LQ +A+ Sbjct: 65 KITALKDVQQSEQARVSTGIGEFDRVLG-GGLVEGAVVLIGGDPGIGKSTLLLQALASMA 123 Query: 86 REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVD 145 ++ E +L + R + +D+ L E +E A +IV D Sbjct: 124 ST-LPVLYVTGEESLAQVAGRAVRLDLP--LEGLNALAETGIENILQHASVARPKLIVAD 180 Query: 146 SVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205 SV L ++ S + +A +L K++ T + + + K G + G Sbjct: 181 SVQTLWTESLTAAPGSVSQVRESAA-------RLVRYAKETGTAVFLVGHV-TKEGGIAG 232 Query: 206 NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETR-VKVVKNKIAAPFKQAEFQIL 264 +A+ ++ E GS R ++ KN+ A + F + Sbjct: 233 PRVLEHMVDAVLYF----------------EGESGSRFRLLRAFKNRFGAVNELGVFAMG 276 Query: 265 YGEGINFYGELVDLGVKEKLIEKAGA 290 +G+ + + + G+ Sbjct: 277 E-KGLKEVSNPSAIFLSGGSTHQPGS 301 >UniRef50_C1FDH7 Rad51 DNA recombinase 3 n=4 Tax=Mamiellales RepID=C1FDH7_9CHLO Length = 362 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 55/289 (19%) Query: 9 KALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGP 68 KAL + K + L E+ T S LD LG GG+ +G I E+ G Sbjct: 71 KALRLGIEGTALAGAKSASEILYEESRKLAVF--TFSKDLDDLLG-GGVAVGEITELCGC 127 Query: 69 ESSGKTTLTLQVIAAAQREGK------TCAFIDAEHALDPIYARK--------------- 107 GKT +Q+ + Q G + +ID E + A++ Sbjct: 128 PGIGKTQACMQLCVSVQMPGAFGGYEGSAVYIDTEGSFMAERAKEVAQATVSHLVSISQF 187 Query: 108 ---------------LGVDIDNLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAA 149 + +D + + + L + ++L R+ V ++V+DS+A Sbjct: 188 LPKHLSESGALSQFTVNEILDRVHLFRCHEITELLAVVESLPMYVRAHGVKLVVIDSMAF 247 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NPE 208 + M L ++++ +L K + ++ +NQI +K G Sbjct: 248 HFRQDF-------KDMALRTAILAKMTTQLLNLAKSEHLAVVSVNQITVKPDPASGVARL 300 Query: 209 TTTGGNALKFYASVRLDI-----RRIGAVKEGENVVGSETRVKVVKNKI 252 G + + R+ + RR+ + + + + + V I Sbjct: 301 VPALGESYAHGCTTRVILSWESDRRMAYLFKSPRLPRGKAKFTVTNGGI 349 >UniRef50_C8PQ08 DNA repair protein radA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQ08_9SPIO Length = 464 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 97/258 (37%), Gaps = 19/258 (7%) Query: 14 ALGQIEKQFGKGSI-MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 72 A + + + + L + D I+TG D LG G + + I G G Sbjct: 50 ASSAVSVRQTDEAHPVPLEQVEVHDTARITTGISEFDRVLGGGAVKRSAV-LIGGEPGIG 108 Query: 73 KTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEIC 130 K+TL +Q AAA G+ ++ E + I A +LGV + N+ ++ E Sbjct: 109 KSTLLMQAAAAA---GQRTLYVSGEESAGQIRGRADRLGVPLKNIELLCTNSVEN----I 161 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + + + V+++DSV L + + A L +K+ + +L Sbjct: 162 EKVLNNINPLVVIIDSVQTLFSPQAGTIPGTINQLKYCANE-------LVQWVKERDAVL 214 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 + K G++ G + + + D+R + A+K V ++ + Sbjct: 215 FLTAHV-TKEGIIAGPKVLEHIVDTVISFERNEDDVRFLRALKNRFGSVDELGIFRMDEK 273 Query: 251 KIAAPFKQAEFQILYGEG 268 +AA A I+ +G Sbjct: 274 GLAAVQDPAALFIIQRQG 291 >UniRef50_UPI0001C33601 DNA repair protein RadA n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C33601 Length = 484 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 84/260 (32%), Gaps = 46/260 (17%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 89 E + +G LD LG GG+ G +V I G GK+TL LQV ++ Sbjct: 74 FDEIVDNEKMQFQSGYDELDRVLG-GGVVPGSLVLIGGDPGIGKSTLLLQVANKLAQKLP 132 Query: 90 TCAFIDAEHALDPIYARKLGV------------------DIDNLLCSQPDTGEQALEICD 131 +I AE + I R + + NL E+ L + Sbjct: 133 RILYISAEESAQQIKLRASRLMMLGTEEKHIERKELERCNRKNLFILSETNLEEILRELE 192 Query: 132 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 191 +L V ++DS+ L S + L K+ N L+ Sbjct: 193 SL----QPQVAIIDSIQTLYLSTLNSAPGSVSQVKECT-------SVLMRLAKRDNITLL 241 Query: 192 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 + + K G + G + + ++ R R+ ++ VKN+ Sbjct: 242 IVGHV-TKEGAIAGPRVLEHLVDTVLYFEGDRYASHRV---------------LRSVKNR 285 Query: 252 IAAPFKQAEFQILYGEGINF 271 A + F+++ + Sbjct: 286 FGATHEIGIFEMIESGLVEV 305 >UniRef50_B6HD82 Pc20g01450 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HD82_PENCW Length = 390 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 28/221 (12%) Query: 34 RSMDVETISTGSLSLDIALGA-------GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 + I+TG LD L GG+ G + EI+GP +GKT+L L + A R Sbjct: 32 SAATRHPIATGLARLDEVLNDLPDQPDQGGILRGHVTEIFGPPGAGKTSLALNIACNALR 91 Query: 87 EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV---DVIV 143 +G +ID L ++ +++D+ + + T + + + ++V Sbjct: 92 DG-KVVWIDTGCPLPTPRLEEMSINLDDFIYFRAHTLAHLIALLARPPKGFPPSGTSLLV 150 Query: 144 VDSVAALTPKAEIEGEIGDSHMGL---------------AARMMSQAMRKLAGNLKQSNT 188 VDSV+ L + + + S+ LA + N Sbjct: 151 VDSVSNLFSAYFPSAQELKDQLAEGKITDKAHLQWLINRRWNIASELGTHLARVAAR-NI 209 Query: 189 LLIFINQIRMKIGVMFGNPETTTGG-NALKFYASVRLDIRR 228 ++ INQ K+ A + R+ + R Sbjct: 210 AVVAINQSHTKVKGQSHAVLQPLLSGGAWEASVQTRIAVYR 250 >UniRef50_C6JJB8 DNA repair protein radA n=5 Tax=Fusobacteriaceae RepID=C6JJB8_FUSVA Length = 463 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 52/318 (16%), Positives = 94/318 (29%), Gaps = 46/318 (14%) Query: 18 IEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 77 I + + + + D+ TG D LG GGL G +V + G GK+TL Sbjct: 51 ISVKETAEKVYSFSDIKMEDMYRYKTGIEEFDRVLG-GGLLQGEVVLVTGNPGIGKSTLL 109 Query: 78 LQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALAR 135 LQV G +I E + + +L + +L E + Sbjct: 110 LQVADRYTSYGT-VIYISGEESPSQVKNRGERLKISAKDLFLM----AETDVSNIYEYLI 164 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 + V++VDS+ L + + + + K+ K+ N + Sbjct: 165 AKKPKVVIVDSIQTLYNSSIDSIPGTPTQ-------IRECTLKIIELAKKYNISFFIVGH 217 Query: 196 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAP 255 I K G + G +A+ + RI ++ KN+ + Sbjct: 218 I-TKDGKVAGPKMLEHMVDAVFNFEGEEGLFYRI---------------LRSTKNRFGST 261 Query: 256 FKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPE 315 + A F + K + Y + L+ Sbjct: 262 NELAVFSMEEDGMKEI---------------KNSSEYFLSERDEKNAGSMVVPVLEGTKV 306 Query: 316 TAKEIEKKVRELLLSNPN 333 EI+ + E + P Sbjct: 307 FLLEIQTLLTESNIGIPK 324 >UniRef50_B1GZI7 DNA repair protein radA n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZI7_UNCTG Length = 455 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 98/313 (31%), Gaps = 48/313 (15%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 +++L + D T D +G GG+ G ++ + G GK+TL L + + Sbjct: 55 SSEVLKLKDISVKDFSRYQTAIKEFDNMIG-GGIVPGSLILLGGAPGIGKSTLMLHISDS 113 Query: 84 AQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 141 G +I E +L + A +L V DN+ + + ++ + + Sbjct: 114 LSDRGT-VLYISGEESLSQVKARAERLKVKKDNIFLASETNLKNIIDAVNKI----DPKF 168 Query: 142 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 +V+DS+ + A L K + + + + K G Sbjct: 169 LVIDSIQTTYHPDLSSAPGTVGQVRETAAE-------LLRVAKSKSIAVFLLGHV-TKEG 220 Query: 202 VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEF 261 + G + + ++ + R RI ++ KN+ + F Sbjct: 221 DLAGPRVLEHIVDTVLYFENERRQTYRI---------------LRAYKNRFGPTSEIGIF 265 Query: 262 QILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKAN-ATAWLKDNPETAKEI 320 ++ L E + + GE++ + N T ++ E+ Sbjct: 266 EMDSS----------------GLSEVSNPSLIFLGERVAEAAGNTVTVAMEGTRPILLEV 309 Query: 321 EKKVRELLLSNPN 333 + P Sbjct: 310 QALTARTTFGIPR 322 >UniRef50_P74391 DNA repair protein radA homolog n=12 Tax=Bacteria RepID=RADA_SYNY3 Length = 505 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 98/298 (32%), Gaps = 48/298 (16%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 + K + + + R + +G LD LG GG+ G ++ I G Sbjct: 53 QKSRSSKVKTGQPQAALTFSQIRQENQGRFLSGYGELDRVLG-GGIVPGALILIGGDPGI 111 Query: 72 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGV--------------DID-- 113 GK+TL LQV ++ AE + I A +LG+ ++ Sbjct: 112 GKSTLLLQVAFQLATRLPRILYVSAEESGQQIKLRATRLGITQTVEPSQAQDGINNLAHD 171 Query: 114 -NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 172 NL + L +AL V ++DS+ L A S + ++ Sbjct: 172 GNLFVLPETNLDDILRELEAL----QPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLL 227 Query: 173 SQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAV 232 Q K+ + L + + K G + G + + ++ R R+ Sbjct: 228 MQ-------LAKRDHISLFIVGHV-TKEGAIAGPKVLEHLVDTVLYFQGDRFASHRL--- 276 Query: 233 KEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGA 290 ++ VKN+ A + F+++ G+ L + + +G Sbjct: 277 ------------LRSVKNRFGATQEIGIFEMVQS-GLQEVLNPSQLFLGSREEFMSGT 321 >UniRef50_C6HX97 DNA repair protein radA n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX97_9BACT Length = 478 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 104/327 (31%), Gaps = 41/327 (12%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + + + + + + D+ STG D LG GG+ G + + G Sbjct: 45 VERYVREAAGGAAESRALPISGVVVGDLPRSSTGLSEFDRVLG-GGIVPGSFILLGGDPG 103 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD-TGEQALEI 129 GK+TL LQ +A RE KT + E + + I R ++ S E L + Sbjct: 104 IGKSTLVLQTVANLARE-KTVLVVCGEESPEQIRMRFDRLEAGKKKTSGLFLLPETDLSL 162 Query: 130 CDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 189 A A + D+++VDS+ + + + + L K+S Sbjct: 163 VLAEAARLSPDILIVDSIQTVFLPEWTQSAGSVIQ-------LRETAATLLEFAKRSRVT 215 Query: 190 LIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVK 249 + I + K G + G + + + R RI ++ K Sbjct: 216 TLVIGHV-TKDGTIAGPRVLEHLVDTVLYLEGERGQPLRI---------------LRTAK 259 Query: 250 NKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAW 309 N+ + F++ G + + + +G G+ + Sbjct: 260 NRFGPTQEVGLFEMEEGGLVEVTNP---------------SAFFLEGRDPGRPGSTVVCG 304 Query: 310 LKDNPETAKEIEKKVRELLLSNPNSTP 336 ++ + E++ L P Sbjct: 305 MEGSRPILVELQALAAPTSLPMPRRVT 331 >UniRef50_B8J0Q7 DNA repair protein radA n=3 Tax=Desulfovibrio RepID=B8J0Q7_DESDA Length = 458 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 108/330 (32%), Gaps = 49/330 (14%) Query: 13 AALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 72 + G + L + E +G +LD LG G +P G + + G G Sbjct: 44 KTRTSLGDSSASGRPVALCQVEDAGHEPYGSGLQALDRVLGKGLVP-GAAILVGGEPGIG 102 Query: 73 KTTLTLQ----VIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQA 126 K+TL LQ V A G+ + E +L I A +LG+ NLL E Sbjct: 103 KSTLLLQVAGLVAAQMASAGRPVLYASGEESLPQIKGRAERLGMLDPNLLALATSRVEDV 162 Query: 127 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 +E +A ++VVDSV LT S + A + + R+L Sbjct: 163 VEAANA----QNPALLVVDSVQTLTSLEAEGLPGNVSQVRAVATSLLELCRRL------- 211 Query: 187 NTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVK 246 LI + + K GV+ G + + R + R+ ++ Sbjct: 212 GCTLILVGHV-TKDGVLAGPRLLEHMVDTVISLEGDRRQMFRL---------------LR 255 Query: 247 VVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANA 306 V KN+ + F++ G+ + + ++ +G Sbjct: 256 VFKNRFGPNEELLVFRMGQR-GMEVVDDPSTFFLGQRDASLSGT--------------AV 300 Query: 307 TAWLKDNPETAKEIEKKVRELLLSNPNSTP 336 + A E++ V LS P Sbjct: 301 VMAVDGQRPLAVEVQALVSRTFLSIPRRAA 330 >UniRef50_B0VEX2 DNA repair protein radA n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VEX2_9BACT Length = 444 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 93/254 (36%), Gaps = 30/254 (11%) Query: 20 KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 79 + R+ + + + TG D+ LG GG+ G ++ I G GK+TL LQ Sbjct: 45 ETLPLSKPERIIDLEYDEFSRLLTGIKEFDLVLG-GGIVKGMLILIGGEPGIGKSTLMLQ 103 Query: 80 VIAAAQREGKTCAFIDAEHALDPIYARK--LGVDIDNLLCSQPDTGEQALEICDALARSG 137 + ++ K + E + + I R L V +N+ + E +E + Sbjct: 104 LSEWMGKQNKKTLYCSGEESAEQIRLRSKHLKVTSENIYLLCTNNAEHIIEAIE----DN 159 Query: 138 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 197 D+ +VDS+ +++ + + + + +L +K L + + Sbjct: 160 KPDLAIVDSIQSVSIPSLDALPGTVTQ-------LRETTSRLLRTVKNLGIPLFLVGHV- 211 Query: 198 MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFK 257 K G++ G + + ++ + +I ++ VKN+ + + Sbjct: 212 TKEGLVAGPKIIEHMVDTVLYFEGEQRSQYKI---------------LRAVKNRFGSTNE 256 Query: 258 QAEFQILYGEGINF 271 F++ + I Sbjct: 257 IGLFEMTHLGLIEV 270 >UniRef50_B4SGR3 DNA repair protein radA n=9 Tax=Chlorobiaceae RepID=B4SGR3_PELPB Length = 457 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 98/310 (31%), Gaps = 47/310 (15%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 L + + + + TG LD LG GGL G V + G GK+TL LQ+ Sbjct: 58 NLHDSVPSEFQRVMTGIGELDRVLG-GGLMQGSAVLVGGEPGIGKSTLMLQLAPRLAPA- 115 Query: 89 KTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 146 +I E + + A++L + NL E L I ++++DS Sbjct: 116 -KVLYISGEESPNQIRERAQRLSIKAPNLWLIPEVNLESILAII----AHEKPALVIIDS 170 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 + + + + A L KQ N +L+ I I K G + G Sbjct: 171 IQTVHSDEYQSSAGTITQIRECAA-------TLIRAAKQQNVILMIIGHI-TKEGALAGP 222 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 + + + RI ++ VKN+ + + F++ Sbjct: 223 KALEHMVDTVLQFEGEGYQRYRI---------------IRSVKNRFGSTNEIGVFRMDES 267 Query: 267 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRE 326 G+ + + G + + A ++ E++ V + Sbjct: 268 -GLEEVSNP--------------SEFFISGRRTDVPGNSILAAIEGTRALLVEVQALVSK 312 Query: 327 LLLSNPNSTP 336 S P Sbjct: 313 TNYSMPQRIS 322 >UniRef50_Q9ZMK9 DNA repair protein radA homolog n=52 Tax=Epsilonproteobacteria RepID=RADA_HELPJ Length = 448 Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 53/339 (15%), Positives = 109/339 (32%), Gaps = 49/339 (14%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + +++ +++ L A + + + E +V S+ LDI LG GG+ G Sbjct: 34 IELNQTQKEVLNALKKPLP---QVQKSVSIAEIEHEEVIKFSSTQSELDIVLG-GGIAKG 89 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI--DNLLCS 118 + + G GK+TL L+V + + + ++ E +L I R +D + L Sbjct: 90 GLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEEELYLL 149 Query: 119 QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 178 + A S V+DS+ L S + + + Sbjct: 150 NEINWP----VIKANMESENYFACVIDSIQTLYSPEISSAPGSISQ-------VREITFE 198 Query: 179 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 L K + + I I K G + G +++ ++ + Sbjct: 199 LMRLAKTRDIAIFIIGHI-TKEGSIAGPRVLEHMVDSVLYFEG---------------DP 242 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEK 298 ++ KN+ + F++ ++ K + + E+ Sbjct: 243 SRELRILRSFKNRFGPTSEIGLFEMKEQGLVS---------------AKEASSLFFSKEE 287 Query: 299 IGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPD 337 +G A L+ + EI+ V E P + Sbjct: 288 PMEGSAITIT-LEGSRALILEIQALVSECSFGAPKRLAN 325 >UniRef50_D0L455 DNA repair protein radA n=18 Tax=Actinomycetales RepID=D0L455_GORB4 Length = 461 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 95/288 (32%), Gaps = 31/288 (10%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + AA R+ E + + TG D LG G +P G ++ Sbjct: 34 DEVTTLFAAGTSATAAVAPSSPARRITEIDAASSAAVPTGIGEFDRVLGRGVVP-GSVIL 92 Query: 65 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDT 122 + G GK+TL L+ + G+T +I E + + R + G +N+ + Sbjct: 93 LAGEPGVGKSTLLLETVKHWAGLGRTALYITGEESAGQVRMRAERTGAVHENVYLA---- 148 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 E L + +++VDSV + G + + L Sbjct: 149 AESDLATILGQVDAVRPSLMIVDSVQTVVATGADGVTGGVTQ-------IRAVTTALVSL 201 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 K +I + + K G + G + + + R R+ Sbjct: 202 AKNRGIAVILVGHV-TKDGAVAGPRSLEHLVDVVLSFEGDRHSTLRM------------- 247 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGA 290 V+ +KN+ + F+ +GI+ + + + ++ + +G Sbjct: 248 --VRGIKNRFGPADEVGCFE-QRDDGIHQVTDPSGIFLHQRDSDVSGT 292 >UniRef50_B7Q5G3 DNA repair protein RAD51/RHP55, putative n=1 Tax=Ixodes scapularis RepID=B7Q5G3_IXOSC Length = 354 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 89/261 (34%), Gaps = 34/261 (13%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFI 94 T+S G LD LG GGLP + E+ G SGKT LQ+ AQR +I Sbjct: 87 TLSFGCPILDRFLG-GGLPTRGVTELSGESGSGKTQFCLQLSLMAQRSLGDGMPIYVVYI 145 Query: 95 DAEHALDPIYARKLGVDI--------DNLLCSQPDTGEQAL----EICDALARSGAVDVI 142 E R++ ++ DN+L S + +L R+ V ++ Sbjct: 146 CTEDRFPDRRLRQMQRELGPAGRSLSDNVLVSHVGELAMLMTCLETTLPSLRRTKRVGLL 205 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 202 V+DSVAAL E A + + L + S ++ +NQ+ I Sbjct: 206 VLDSVAALFR-----SEYEQDQGIQRAADLRKLGTVLDRIWR-SGVAVLCVNQVTDLISS 259 Query: 203 M------FGNPETTTGGNALKFYASVRLDIRRIGAVK----EGENVVGSETRVKVVKNKI 252 G + G + RL + + + R++VV + Sbjct: 260 DHPMFPVTGASCVPSLGLTWGNVVTTRLFVSKTALTYAGARNSAEPEVNVRRLQVVCSPS 319 Query: 253 AAPFKQAEFQILYGEGINFYG 273 + ++ G+ Sbjct: 320 LPHRPEGCLYVVTQRGVQGIE 340 >UniRef50_A8F5C2 DNA repair protein radA n=1 Tax=Thermotoga lettingae TMO RepID=A8F5C2_THELT Length = 441 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 97/252 (38%), Gaps = 32/252 (12%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 93 +S++ ++TG LD +L +G +P G+++ + G GK+TL L++ A + G + Sbjct: 54 KSVNSTRLTTGFTELDASLCSGIVP-GQVLLLGGEPGVGKSTLALEICAWFSKNGYKSLY 112 Query: 94 IDAEHALDP--IYARKLG-VDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 + AE ++D I AR+L ++D + + + L+I + +IVVDS+ + Sbjct: 113 VSAEESVDQLAIRARRLACENLDGITVCSDNDIDSVLQII-----NEDYSLIVVDSLQTM 167 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 + + + A K+ K+ + I I I K G + G Sbjct: 168 YSEEVGTYPGSVVQVRVCA-------EKIISKCKELSIPSILIAHI-TKSGEISGPKLVE 219 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 + + ++ ++V+KN+ + A F++ Sbjct: 220 HLVDTVIYFEG---------------EKTTELRILRVIKNRFGPSGEIAVFEMRDDGLKQ 264 Query: 271 FYGELVDLGVKE 282 + + Sbjct: 265 LCDPVFFDLTDQ 276 >UniRef50_A3CXI2 DNA repair and recombination protein radB n=5 Tax=Methanomicrobiales RepID=RADB_METMJ Length = 224 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 95/240 (39%), Gaps = 30/240 (12%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 M + +STGS + D LG GGL I +IYG +SGK+TL L A R G + +ID Sbjct: 1 MKTDRVSTGSTAFDDLLG-GGLERRAITQIYGEPASGKSTLCLMAAVATLRAGNSVVYID 59 Query: 96 AE----HALDPIYARKLGVDIDNLLCSQPDTGEQA---LEICDALARSG--AVDVIVVDS 146 E I G D L +P Q + + L ++G V ++V+DS Sbjct: 60 TEGFSVERFTQIAGENAGTLADRLYLFEPLDFAQQGTMIADAEGLLKNGHAPVGLLVMDS 119 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 AL G A R +S M KL G K+ + ++ NQI M + + Sbjct: 120 ATALYRTELDLG-------REAIRKLSHHMIKLLGLAKKYDIPVLITNQIYMDVE---RD 169 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 GG AL+ + + + + S R + K++ +F I Sbjct: 170 RVAGLGGTALEHLSKAIIRLEKK----------DSARRAMLRKHRSRPEGLSFDFTITED 219 >UniRef50_P65954 DNA repair protein radA homolog n=92 Tax=Actinobacteria (class) RepID=RADA_MYCBO Length = 480 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 97/267 (36%), Gaps = 33/267 (12%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 + + + TG LD LG GG+ G + + G GK+TL L+V + Sbjct: 57 VPISAVDAHRTRPCPTGIDELDRVLG-GGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQS 115 Query: 88 GKTCAFIDAEHALDPIYARK----LGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 G+ ++ E + I R G +++ + + L+ + + +++ Sbjct: 116 GRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETV----QPALVI 171 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 VDSV ++ G + + ++ A + + LI + + K G + Sbjct: 172 VDSVQTMSTSEADGVTGGVTQVRAVTAALTAAAKA-------NEVALILVGHV-TKDGAI 223 Query: 204 FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 G + + + R G+ V+ VKN+ A + F + Sbjct: 224 AGPRSLEHLVDVVLHFEGDR---------------NGALRMVRGVKNRFGAADEVGCF-L 267 Query: 264 LYGEGINFYGELVDLGVKEKLIEKAGA 290 L+ GI+ + +L + ++ AG Sbjct: 268 LHDNGIDGIVDPSNLFLDQRPTPVAGT 294 >UniRef50_Q6MJQ7 DNA repair protein radA n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJQ7_BDEBA Length = 463 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 90/262 (34%), Gaps = 31/262 (11%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 90 + ++ T L+ LG GGL G V + G GK+TL LQ+ Sbjct: 68 QRLEEVKLDRFDTSFEELNRVLG-GGLAKGSFVLLGGSPGIGKSTLLLQMAGGLANNKHK 126 Query: 91 CAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 148 +I E ++ A +LG+ + E L +AR DV+VVDS+ Sbjct: 127 VLYISGEESVSQTGSRAHRLGIRSPLIEVG----CESNLTAVMEMARFKKPDVLVVDSIQ 182 Query: 149 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE 208 + S + A L G K +I I + K G + G Sbjct: 183 TMFLPDLQAAPGSVSQVRECA-------GHLMGLAKHDGITVILIGHV-TKDGNIAGPKV 234 Query: 209 TTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEG 268 + + + R+ ++ +KN+ A + FQ+ +G Sbjct: 235 LEHMVDCVLSFDGDISYNFRL---------------LRSLKNRFGAAHELGVFQMN-SKG 278 Query: 269 INFYGELVDLGVKEKLIEKAGA 290 + +L ++E+ + G+ Sbjct: 279 LEEVSNPSELFLEERGDQLIGS 300 >UniRef50_D1ZY30 Whole genome shotgun sequence assembly, contig_3649 n=1 Tax=Sordaria macrospora RepID=D1ZY30_SORMA Length = 209 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 78/139 (56%), Positives = 106/139 (76%), Gaps = 10/139 (7%) Query: 189 LLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVV 248 ++IFINQ+RMKIGVM+GNPETTTGGNALKFYAS +K+ + ++G+ TRVKVV Sbjct: 1 MVIFINQLRMKIGVMYGNPETTTGGNALKFYAS----------IKDRDEIIGNATRVKVV 50 Query: 249 KNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATA 308 KNK+A PFKQ EF I+YG+GI+ GE++DLGVK L+EK+GAW+SY +IGQG+ NA Sbjct: 51 KNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENAKT 110 Query: 309 WLKDNPETAKEIEKKVREL 327 +L ++PE ++E +R+ Sbjct: 111 FLTEHPELRDKLEASIRQR 129 >UniRef50_O15315 DNA repair protein RAD51 homolog 2 n=30 Tax=Deuterostomia RepID=RA51B_HUMAN Length = 384 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 94/293 (32%), Gaps = 58/293 (19%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 ++ +ST +LD AL GG+ G + EI GP GKT + + A Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLP 128 Query: 88 GKT------CAFIDAEHALDPIYA---------------RKLGVDIDNLLCSQPDTGEQA 126 +ID E A KL + + + T ++ Sbjct: 129 TNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEV 188 Query: 127 LEICDAL---ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 L+ ++L S + ++++DSVA++ K ++ + +++ L Sbjct: 189 LQRIESLEEEIISKGIKLVILDSVASVVRKEF--DAQLQGNLKERNKFLAREASSLKYLA 246 Query: 184 KQSNTLLIFINQIRM---------------------KIGVMFGNPETTTGGNALKFYASV 222 ++ + +I NQI G + GN + Sbjct: 247 EEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNT 306 Query: 223 RLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 275 RL ++ + + ++ + K+ +A PF + I + Sbjct: 307 RLILQYLDS---------ERRQILIAKSPLA-PFTSFVYTIKEEGLVLQETTF 349 >UniRef50_UPI0000E48A98 PREDICTED: hypothetical protein n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A98 Length = 355 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 96/286 (33%), Gaps = 35/286 (12%) Query: 9 KALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGP 68 KA++ + +I+ + ++ + ++TG LD L G L G I EI G Sbjct: 49 KAVSEEVYKIKNITALTLFKQSHQEDRKEPTHLTTGCPILDEFLHGGILVKG-ITEIAGQ 107 Query: 69 ESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL--------GVDI-- 112 ++GKT L LQ+ AQ +I E ++L G + Sbjct: 108 SAAGKTQLCLQLCLTAQLPVQQGGLSNGVVYICTEDVFPSKRLQQLISSFNSKIGPALAK 167 Query: 113 -----DNLLCSQPDTGEQALEICDA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDS 163 D++ +Q + L G V + VVDS+AA+ E Sbjct: 168 QLAVGDHIYVEHAAEKDQLWHCLEKRLPLLLSRGMVKLAVVDSLAAIFR-----SEFELR 222 Query: 164 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG---VMFGNPETTTGGNALKFYA 220 AR + + L Q N ++ +NQ+ + + G Sbjct: 223 DTIRRARELQRVGAHLHRLSSQFNVAVVCVNQVTANMKASLDPTESEMMPALGLTWSNIV 282 Query: 221 SVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAP-FKQAEFQILY 265 VRL + R + + T V + + ++AE + Sbjct: 283 KVRLMLSRTPYRLPPSDTTNNRTDRGSVNGECSHESEQKAEIPVRQ 328 >UniRef50_C9JYJ0 Putative uncharacterized protein RAD51L1 n=1 Tax=Homo sapiens RepID=C9JYJ0_HUMAN Length = 425 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 94/287 (32%), Gaps = 58/287 (20%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 ++ +ST +LD AL GG+ G + EI GP GKT + + A Sbjct: 70 IKAQRSADFSPAFLSTTLSALDEAL-HGGVACGSLTEITGPPGCGKTQFCIMMSILATLP 128 Query: 88 GKT------CAFIDAEHALDPIYA---------------RKLGVDIDNLLCSQPDTGEQA 126 +ID E A KL + + + T ++ Sbjct: 129 TNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDEV 188 Query: 127 LEICDAL---ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 L+ ++L S + ++++DSVA++ K ++ + +++ L Sbjct: 189 LQRIESLEEEIISKGIKLVILDSVASVVRKEF--DAQLQGNLKERNKFLAREASSLKYLA 246 Query: 184 KQSNTLLIFINQIRM---------------------KIGVMFGNPETTTGGNALKFYASV 222 ++ + +I NQI G + GN + Sbjct: 247 EEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNT 306 Query: 223 RLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 RL ++ + + ++ + K+ +A PF + I + Sbjct: 307 RLILQYLDS---------ERRQILIAKSPLA-PFTSFVYTIKEEGLV 343 >UniRef50_Q0BVC8 DNA repair protein radA n=4 Tax=Proteobacteria RepID=Q0BVC8_GRABC Length = 460 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 35/291 (12%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 + + I+TG LD LG GGL G ++ + G GK+TL LQ AA R Sbjct: 56 LPASGADAAPPPRIATGIEELDRVLG-GGLVPGSVILVGGDPGIGKSTLMLQAAAALARA 114 Query: 88 GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV 147 G ++ E A++ + R + + + + +I L + ++V+DS+ Sbjct: 115 GGRALYVSGEEAVEQVRLRARRLHLAD-APLELAASGHVRDIAATLETARDAALVVIDSI 173 Query: 148 AALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 207 + + + + +L K L+ + + K G + G Sbjct: 174 QTMWLDSLDSAPGTVAQVRAC-------GFELIRLAKSVGFALVLVGHV-TKEGAIAGPR 225 Query: 208 ETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV-KVVKNKIAAPFKQAEFQILYG 266 +A+ ++ R G + R+ + VKN+ A + F++ Sbjct: 226 VLEHMVDAVLYFEGDR----------------GHQFRILRGVKNRFGATDEIGVFEMT-D 268 Query: 267 EGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETA 317 G++ L E+ G G + G + L + Sbjct: 269 LGLSEVAN----PSALFLAERRGN---IAGSAVFAGMEGSRPVLLEVQALL 312 >UniRef50_B9L030 DNA repair protein radA n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L030_THERP Length = 470 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 104/312 (33%), Gaps = 45/312 (14%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 + L S + +S S D LG GGL G +V + G GK+TL LQ Sbjct: 58 VQELSRVTSAERTRLSLRSPEFDRVLG-GGLVPGALVLLGGDPGIGKSTLLLQAALRLAS 116 Query: 87 EGKTCAFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 EG ++ AE + + I R +LG D +L E AL+ +A+ +++V Sbjct: 117 EGLRVLYVAAEESPEQIRLRADRLGKTSDGVLIL----AETALDRAIEIAQELDPAILIV 172 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DS+ + + S + + Q K++ T + + + K G++ Sbjct: 173 DSIQTVFLSSSESSPGSVSQVRDCTAQLLQF-------AKRARTPVFLVGHV-TKEGLIA 224 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 G + + + R R+ ++ KN+ + + F++ Sbjct: 225 GPRVVEHMVDVVLYLEGERFHQHRL---------------LRAAKNRFGSTNEIGVFEMT 269 Query: 265 YGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKV 324 G+ L + E+ AG+ L+ E++ Sbjct: 270 -DSGLLDVSNPSALFLAERASHAAGS--------------AVVVTLEGTRPILIEVQALT 314 Query: 325 RELLLSNPNSTP 336 P Sbjct: 315 SSAGYGTPRRIA 326 >UniRef50_A7HJZ5 DNA repair protein radA n=3 Tax=Thermotogaceae RepID=A7HJZ5_FERNB Length = 465 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 33/235 (14%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAF 93 + E I TG S+D L GGL G+++ + G GK+T+ LQ+ + R K + Sbjct: 72 EEERIKTGINSIDELLS-GGLIKGQVILLGGEPGVGKSTIALQICDSIARNSNNDKRIYY 130 Query: 94 IDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 151 I E ++ + A++LG++ + LL + E +E +IVVDS+ L Sbjct: 131 ISGEESVGQVGLRAKRLGINNEKLLI----SSETQIEDILNEIDPNKAQLIVVDSIQTLC 186 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 211 G + + K+ K+ I I + K G + G Sbjct: 187 SVDIDSPVGGIVQ-------IKAVVEKVRIFSKKYGIPSILIAHV-TKEGTIAGPKLVEH 238 Query: 212 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 + + ++ R RI ++V KN+ + FQ+ Sbjct: 239 VVDTVIYFEGERTTDYRI---------------LRVQKNRYGPSGEITVFQMTSN 278 >UniRef50_D0NZ01 DNA repair and recombination protein radA, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ01_PHYIN Length = 306 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 106/281 (37%), Gaps = 47/281 (16%) Query: 2 AIDENKQ-KALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 I E K+ K L A + ++ G S L + + I+TGS LD LG GGL Sbjct: 64 GISEAKRVKLLHAGKKMMPEKSGFVSASSLYQQSQSRI-FITTGSQQLDQILG-GGLETM 121 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 + E++G +GKT L P +DN++ ++ Sbjct: 122 SVTEVHGEFRTGKTQLCHT------------------GTFRPDPEDV----LDNIIVARA 159 Query: 121 DTGEQALEICDAL------ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 174 + + +++ L G ++++DSV AL G + + ++Q Sbjct: 160 HSHDAQMDLVVKLGVLFADPDQGPFRLLIIDSVTALFRT----DFSGRGELSERQQRLNQ 215 Query: 175 AMRKLAGNLKQSNTLLIFINQIRMKI--GVMFGNPETTTGGNALKFYASVRLDIRRIGAV 232 + +L + ++ N ++ +NQ+ V+FG+ GG+ + R+ +++ A Sbjct: 216 HLARLVKHAEEFNIAVLVVNQVMADPVANVLFGSEMKPVGGHVMSHGVHTRVLMKKGRA- 274 Query: 233 KEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 273 E R+ V + P + Q+ G + Sbjct: 275 ---------ENRICKVIDSPCMPEAECSIQLYEGGVTDSDE 306 >UniRef50_C9Y705 DNA repair protein radA n=6 Tax=Bacteria RepID=C9Y705_9BURK Length = 665 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 110/325 (33%), Gaps = 46/325 (14%) Query: 14 ALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 73 A + + L + + DVE TG LD GG+ G +V I G GK Sbjct: 44 AKNRFASLAKTAEVTVLSDIEAQDVERTPTGHEELDRV-LGGGMVEGGVVLIGGDPGIGK 102 Query: 74 TTLTLQVIAAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICD 131 +TL LQ + + QR GK ++ E + + +R+LG+D + E LE Sbjct: 103 STLLLQALDSLQRSGKNTLYVTGEESGAQVALRSRRLGLDHSQVKVL----AEIQLEKIL 158 Query: 132 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 191 A + DV V+DS+ + + + + A L K S T ++ Sbjct: 159 ATLEANRPDVAVIDSIQTVYSEQLTSAPGSVAQVRECAA-------HLTRAAKASGTAIV 211 Query: 192 FINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 + + K G + G + + ++ R+ V+ +KN+ Sbjct: 212 LVGHV-TKEGALAGPRVLEHMVDTVLYFEGDTHSQFRL---------------VRAIKNR 255 Query: 252 IAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLK 311 A + F + +G+ + + + G+ L+ Sbjct: 256 FGAVNEIGVFAMTE-KGLKGVSNPSAIFLSQHAEPVPGS--------------CVMVTLE 300 Query: 312 DNPETAKEIEKKVRELLLSNPNSTP 336 EI+ V ++ +P Sbjct: 301 GTRPLLVEIQALV-DMGGPSPRRLS 324 >UniRef50_B2S0C8 DNA repair protein radA n=2 Tax=Borrelia RepID=B2S0C8_BORHD Length = 466 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 16/228 (7%) Query: 23 GKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 82 K I L + + +D TG D LGA G+ +G + I G GK+T LQ+ + Sbjct: 52 SKSEIFSLKDFKQVDNVRYLTGIEEFDRVLGA-GIVIGSAILISGEPGIGKSTFLLQISS 110 Query: 83 AAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 140 +GK ++ E ++ I A +L + D L+ ++ D ++ + + +D Sbjct: 111 ILSLDGKNVLYLAGEESIPQIKLRANRLKISSDILITNEID-----VDALIEMLANIELD 165 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 +VVDS+ L + G + + + KL K N L + + K Sbjct: 166 FMVVDSIQTLNSREVQGSLGGVAQ-------LKHCVYKLVEWAKGKNITLCLVGHV-TKD 217 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVV 248 G++ G +++ ++ + +R + A K + ++ Sbjct: 218 GILAGPKIIEHMVDSVFYFEEAKKSLRMLRATKNRFGTINEIGIFEMT 265 >UniRef50_Q8TWK1 RadA recombinase n=1 Tax=Methanopyrus kandleri RepID=Q8TWK1_METKA Length = 316 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 101/281 (35%), Gaps = 32/281 (11%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 + +K +A A + K + + + + I TG D +G GGLP G IV Sbjct: 52 ESTAKKIIADAREEASKGIMEAKTLADLLEEEKKRDVIPTGIQGFDERMG-GGLPTGVIV 110 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG--------VDIDNL 115 +YGP +GK+ QV A A +EG++ +ID E+A P ++G D Sbjct: 111 GMYGPPGAGKSQFATQVAAHALKEGESVLYIDTENAFRPQRLLEIGGFKKDELKEVSDRF 170 Query: 116 LCSQPDTG-------EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 168 + + ++ + A V+V+DS++ ++ Sbjct: 171 VLRRIIDAAALRQYFDEKEGEFISEAYELTPKVVVIDSISQPFRPYSARDKL-----PER 225 Query: 169 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 228 +RM++ + L N L + ++ G LK A+ R I Sbjct: 226 SRMIAHILNTLLKYCTAYNALGMVTTHVQANPDAW-GKRWQDVAPTVLKHIATYRFSI-- 282 Query: 229 IGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 + G RV +++ P + + ++ + Sbjct: 283 --------DYKGRTERVITLEDAPDKPPFEVQVELTDRGLV 315 >UniRef50_UPI000180D2F5 PREDICTED: similar to Rad51 homolog c n=1 Tax=Ciona intestinalis RepID=UPI000180D2F5 Length = 391 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 90/274 (32%), Gaps = 49/274 (17%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---- 87 + IST S +LD LG GG+ +G I EI G S+GKT L Q+ A Sbjct: 10 QQELSKNSQISTFSSNLDSLLG-GGVKVGSITEIAGESSTGKTQLCFQLATNAHIHTKYG 68 Query: 88 --GKTCAFIDAEHALDPIY-----------------ARKLGVD--IDNLLCSQPDTGEQA 126 G +ID E A + D + + + Q Sbjct: 69 GVGGETVYIDTEMTFKTERIGQIAQAMVHHFERTKHATDMSADTVLSGIYLFRCIKMVQL 128 Query: 127 L----EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 L ++ + + V +++VDS+A E M + ++++ L Sbjct: 129 LAVSYQLFEFVKSHPKVKLVIVDSIAQXXRAEE--------DMKIRNKLLNNLAANLRKI 180 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 N ++ +NQ+ + + G + +L + ++ + Sbjct: 181 ASLLNVAVVLVNQVTTRFDEYGNSCMVPALGESWSNIPHTKLFLYKLQGL---------- 230 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV 276 R ++ P ++ + I + ++ Sbjct: 231 -RFALLTKSPTQPRRKVNYVITSNGIRDTAHDVS 263 >UniRef50_B0XK02 RAD51D n=2 Tax=Culicini RepID=B0XK02_CULQU Length = 323 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 94/265 (35%), Gaps = 34/265 (12%) Query: 13 AALGQIEKQFGK---GSIMRLGEDRS---MDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 L I++ F G+ +R+GE ++ I TG LD L GGL G ++E++ Sbjct: 50 EVLSAIKRDFMTRCSGTTVRVGEYFQYLGELIDPIPTGVRGLDALL-QGGLLPGHVLEVF 108 Query: 67 GPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGV-----------D 111 G + GK+ L + + A G ++D + + + + Sbjct: 109 GEPACGKSQLCMTIAANVASRGAADPVDVFYVDTKCDFSASRVQSMLLAGKCSEEEAREA 168 Query: 112 IDNLLCSQPDTGEQA-------LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 164 + + + + E L D R G V++VDS+ AL + Sbjct: 169 MQRIKVERIHSPEHLLGTVEEMLAQIDQEERFGKFRVLLVDSLPALWYAHQNSSSSCYP- 227 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 224 M++ L ++ ++ +N + G + + RL Sbjct: 228 ----VGMLTSLAGLLRKLASENMIAVVVVNLRIVSTDSGQQRVTQPALGRYWEMVPTTRL 283 Query: 225 DIRRIGAVKEGENVVGSETRVKVVK 249 + ++ + G+N + S ++ +K Sbjct: 284 LMSKLDSGDNGQNRLISISKCNYLK 308 >UniRef50_Q2NHD1 DNA repair and recombination protein radB n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=RADB_METST Length = 232 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 106/238 (44%), Gaps = 27/238 (11%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 I T + SLD LG GG+ G I + YGP SGKT + L+++ A + G ++D E L Sbjct: 13 IPT-NSSLDKLLG-GGIEKGCITQFYGPPGSGKTNIALKILYEATKNGSKAIYMDTEGGL 70 Query: 101 DPIYARKL-----GVDIDNLLCSQPDTGEQAL----EICDALARSGAVDVIVVDSVAALT 151 +++ G N+ +P + ++ + I D L + ++D++++DS+ AL Sbjct: 71 SLERIQQIAGTDFGSISKNIYILEPKSFDEQILDIQNIEDILKKDKSIDMLIIDSIVALY 130 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 211 + + + + + M KL ++ N ++ NQI Sbjct: 131 RVEDGD-------PSEINKRLGRLMAKLLRLSREYNVAIVITNQIYSPFDSDDLI-IEPI 182 Query: 212 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 GG LK+++ + ++I + +V + + ++K AP + +F+I+ I Sbjct: 183 GGTVLKYWSKIIIEIEK--------SVDSLKRTATLQRHKTKAPGQSIKFEIIDRGII 232 >UniRef50_Q94CQ8 P0660F12.22 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q94CQ8_ORYSJ Length = 239 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 42/236 (17%) Query: 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 121 +VE++G E+SGKTTL L V+ AQ++G CA+IDAE+A +P A +GV+++ LL +QPD Sbjct: 1 MVELFGKEASGKTTLALHVVKEAQKKGGCCAYIDAENAFNPSVAEAIGVNVEKLLIAQPD 60 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 + E +L I + L + + R + Sbjct: 61 SAENSLSIVNTLV---------------------------GGSIDVVVVDSVCFFRNVRT 93 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 L + T IF E GGNAL FYA+VR+ R G Sbjct: 94 KLSSNQTPGIF--------------KEVACGGNALGFYAAVRMRTSRRELRYNEAQATGI 139 Query: 242 ETRVKVVKNKIAA-PFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKG 296 V+++KNK+A K+A I +G+GI + E+++L +I K + Y Sbjct: 140 GISVQIIKNKLAPATLKEAGIDIRFGKGICYESEILELASSLGVIMKDDSGYWINA 195 >UniRef50_A6STQ0 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6STQ0_BOTFB Length = 383 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 89/275 (32%), Gaps = 43/275 (15%) Query: 30 LGEDRSMDVETISTGSLSLDIAL--------------GAGGLPMGRIVEIYGPESSGKTT 75 L + S ISTG LD+AL GG+P G++ EIYGP GKTT Sbjct: 10 LQDLESSPTRCISTGLSLLDLALQNKDPLQVSTSVDHNHGGIPRGKVTEIYGPPGVGKTT 69 Query: 76 LTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD--------------IDNLLCSQPD 121 L + + A + + ++DA H + ++ + + N Sbjct: 70 LGMHLAARVLHQNENVVWVDASHPISGPRFSQILQESPSTSPEPLNNDTLLSNFNHFTTP 129 Query: 122 TGEQALEICDALARSGAV---DVIVVDSVAALTPKAEIEGEIGDSHMG---------LAA 169 T L + ++ +I++DS + L A + S Sbjct: 130 TLSHLLALLTYTTQNFPPENTSLIIIDSFSTLIDSAFPRNAVSTSTPKKPGVPNPSSRKF 189 Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT-TGGNALKFYASVRLDIRR 228 ++ + L N +I + Q K+ G + + R+ + R Sbjct: 190 PLLQYLINALQKLATTRNIAIIILTQCVTKMRPGLGAALIPSISATSWEQGLGCRVALFR 249 Query: 229 IGAVKEGENVVGSETRV-KVVK-NKIAAPFKQAEF 261 + E R +V+K N + F Sbjct: 250 DWGWDDDEGNKVDGVRFAQVIKANGTTLSEGKGIF 284 >UniRef50_P73860 KaiC-like protein 1 n=35 Tax=cellular organisms RepID=KACL1_SYNY3 Length = 568 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 102/311 (32%), Gaps = 42/311 (13%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 I L + S+ E ISTG LD G G G + + G +GKTTL A Sbjct: 239 ITSLILNHSVSQERISTGIPQLDDMFGGQGYYRGSSILVTGRAGTGKTTLAAFFAQATCL 298 Query: 87 EGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQP----------DTGEQALEICDALA 134 G+ C ++ E + I +G+D+ L SQ E L + Sbjct: 299 RGERCLYLATEESPQQICRNLNSIGLDLSPYLDSQLLQFDATRPTNYNLEMRLFKIHSWV 358 Query: 135 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 R+ ++VVD ++ L + +L LK + + Sbjct: 359 RNFKPSLVVVDPMSNLITSGNLN-------------QTKNFFMRLIDYLKSQKITVFLTD 405 Query: 195 QIRMKIG--VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKI 252 +G ++ + ++R++ R + ++K++ Sbjct: 406 LTGGNVGYDNEQTEVGVSSLMDTWLELQTLRINGERNRILY-------------ILKSRG 452 Query: 253 AAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKD 312 A Q IL +G++ + G ++ + E I + + A K Sbjct: 453 MAHSNQVREFILSNDGVDLIEAYIGEGQVLTGTQRINQ--ILEEEAIAKRRQQALELSKR 510 Query: 313 NPETAKEIEKK 323 N E K + + Sbjct: 511 NFERKKYLLQA 521 Score = 81.1 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 86/291 (29%), Gaps = 23/291 (7%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCA 92 +S+ + TG D GGLP GR I G GKT ++ + E G+ Sbjct: 6 QSLSLIKCPTGIQGFDEITN-GGLPQGRPTLICGSAGCGKTLFGVEFLVRGAVEYGEPGV 64 Query: 93 FIDAEHALDPIY--ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 150 + E + I LG ++ +L+ + + + +G D+ + Sbjct: 65 LVSFEESAKEIIQNVASLGWNLQDLVAEEKILIDHIYVEASEIQETGEYDLEALFIRLGY 124 Query: 151 TPKAEIEGEIGDSHMG------LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 I + ++ +R+L LKQ + + K Sbjct: 125 AINKIGAKRILLDTIEVLFSGLENTNIVRAELRRLFHWLKQKGVTAVITGERGDKNLTRQ 184 Query: 205 G-NPETTTGGNALKFYASVRLDIRRIGAVK-EGENVVGSETRVKVVKNKIA-APFKQAEF 261 G + L + R I VK G +E + +N I+ P Sbjct: 185 GLEEYVSDCVIKLDQKTVEEVATRTIQVVKYRGSRHSNNEYPFLIEENGISVLPITSLIL 244 Query: 262 -----QILYGEGINFYGELVDL-----GVKEKLIEKAGAWYSYKGEKIGQG 302 Q GI ++ G + +AG + Q Sbjct: 245 NHSVSQERISTGIPQLDDMFGGQGYYRGSSILVTGRAGTGKTTLAAFFAQA 295 >UniRef50_Q2USE9 Predicted protein n=9 Tax=Trichocomaceae RepID=Q2USE9_ASPOR Length = 375 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 93/302 (30%), Gaps = 55/302 (18%) Query: 29 RLGEDRSMDVETISTGSLSLDIAL---------------GAGGLPMGRIVEIYGPESSGK 73 L + ISTG LD A+ + G+P G + E+YGP +GK Sbjct: 25 SLHASAASPSGAISTGIPQLDEAIRPPSAEDVLGRTRDINSNGIPCGHVTEVYGPPGAGK 84 Query: 74 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKL--------GVDI-----DNLLCSQP 120 T+L L V +A R G +ID L + + D+ NL+ Sbjct: 85 TSLALSVATSALRNGDKVIWIDTGSPLPKVRLASMLKKSPDATSSDLPEDPIKNLIYFHA 144 Query: 121 DTGEQALEICDALARSGAV---DVIVVDSVAALTPKAE-------IEGEIGDSHMGLAAR 170 + L + + ++V+DSV+ L P + + Sbjct: 145 RSLPHLLALLIRPPKGFPPEDAKLLVIDSVSGLFPSYFPNPSEFKSRLPQSGITDKMQIQ 204 Query: 171 MM--------SQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG-NALKFYAS 221 + S +L ++ +NQ +I + Sbjct: 205 WLMNRKWNVTSDLGNQLVKLAATHGLAILLVNQTHTRIRGQPRATLCPVLAGGTWENSVH 264 Query: 222 VRLDIRRIGAVKEGENVVGSETRVKVVKN-----KIAAPFKQAEFQILYG--EGINFYGE 274 VR+ I R ++ + G +V+K + F+I GI+ Sbjct: 265 VRIAIFRDFLPEDEGDSKGVHF-AEVMKRAGKTLSLRLDENIVPFKIETDGLRGIDKTPP 323 Query: 275 LV 276 + Sbjct: 324 PL 325 >UniRef50_C6A0N1 DNA repair and recombination protein radB n=9 Tax=Thermococcaceae RepID=RADB_THESM Length = 228 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 34/242 (14%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 ++TGS +LD LG GG+ G + ++YGP ++GKTTL +Q+ A+ID E Sbjct: 2 LTTGSKNLDALLG-GGIDKGILTQVYGPFATGKTTLAMQI---GLLNEGKVAYIDTEGGF 57 Query: 101 DPIYARKL----GVD----IDNLLCSQPDTGEQALEICDALAR--SGAVDVIVVDSVAAL 150 P K+ G+D + L + ++ + L + + +IVVDS+ Sbjct: 58 SPERLAKMVESRGMDSNSTLQKFLIFEAFDFKEQKKTISNLKKIVNEKFSMIVVDSITNH 117 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 E + + + + ++ L ++ N +I NQ+ Sbjct: 118 YRVEEKKSSMTTD--------LGKQLQVLLWLARKYNLAVIVTNQVYFDSKQNA---LKP 166 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 + + + L + ++ G V + +++ F+I + Sbjct: 167 LAEHIMGYKCKDILRLEKLR--------PGLRIAV-LERHRFKPEGGIVHFEITDKGIED 217 Query: 271 FY 272 Sbjct: 218 IE 219 >UniRef50_Q7ZTX4 Zgc:56581 n=7 Tax=Euteleostomi RepID=Q7ZTX4_DANRE Length = 373 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 95/297 (31%), Gaps = 53/297 (17%) Query: 18 IEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 77 + K I L + + ST +LD L GGLP G + E+ GP GKT L Sbjct: 56 VSKACAPAVITALDLWKRKEELCFSTSLPALDRLL-HGGLPRGALTEVTGPSGCGKTQLC 114 Query: 78 LQVIAAAQRE------GKTCAFIDAEHALDPIYA---------------RKLGVDIDNLL 116 + + A +ID E A +L + Sbjct: 115 MMLSVLATLPKSLGGLDSGVIYIDTESAFSAERLVEMAQSRFPEFFSVKERLLEMAARVH 174 Query: 117 CSQPDTGEQALEICDALARS---GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS 173 + T + L+ + L ++++DSVA++ K G ++ + + Sbjct: 175 LFRELTCQDVLKRLERLEEDIIACRAGLVILDSVASVVRKEFDTSLPG--NLTHRSNFLG 232 Query: 174 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP---------------ETTTGGNALKF 218 Q L ++ ++ NQI +G P T GN Sbjct: 233 QEAAVLKYLSQEFCIPVVLTNQITTHVGEKLHCPQWNQTDASFEEDSGFVTAALGNTWSH 292 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGEL 275 + RL ++ ++ + K+ +A PF + I EGI + Sbjct: 293 SVNTRLIVQY---------EDSERRQIVIAKSPVA-PFAVLSYTIQ-KEGIRLEENM 338 >UniRef50_B5LBC4 RAD51D transcript variant delta 10 n=14 Tax=Euteleostomi RepID=B5LBC4_MOUSE Length = 307 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 91/272 (33%), Gaps = 37/272 (13%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 + AL L F L E+ +STG SLD L GL G Sbjct: 44 GLSYKALVALRRVLLAQFSAFPLNGA-DLYEELKTSTAILSTGIGSLDKLL-DAGLYTGE 101 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKL-----------G 109 + EI G SGKT + L V A + ++D+ + +L Sbjct: 102 VTEIVGGPGSGKTQVCLCVAANVAHSLQQNVLYVDSNGGMTASRLLQLLQARTQDEEKQA 161 Query: 110 VDIDNLLCSQPDTGEQALEICDAL---------ARSGAVDVIVVDSVAALTPKAEIEGEI 160 + + + + L++ L SGAV V++VDSV A+ + Sbjct: 162 SALQRIQVVRSFDIFRMLDMLQDLRGTIAQQEATSSGAVKVVIVDSVTAVV------APL 215 Query: 161 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 220 +M Q R+L + ++ N + G G + F Sbjct: 216 LGGQQREGLALMMQLARELKILARDLGVAVVVTNHLTRD---WDGRRFKPALGRSWSFVP 272 Query: 221 SVRLDIRRIGAVKEGENVVG-SETRVKVVKNK 251 S R+ + V EG +G S+ V + K+ Sbjct: 273 STRILLD----VTEGAGTLGSSQRTVCLTKSP 300 >UniRef50_D1ALG8 DNA repair protein radA n=3 Tax=Fusobacteriaceae RepID=D1ALG8_SEBTE Length = 450 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 100/282 (35%), Gaps = 34/282 (12%) Query: 11 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 70 + L +I + I++L E + T D LG GGL G +V I G Sbjct: 38 IKKTLSKISAE--DVEIVKLEEIELGKEFRMVTKFSEFDRVLG-GGLVKGEVVLISGNPG 94 Query: 71 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALE 128 GK+T LQ+I + G +I E +L I A +LGV +L + E LE Sbjct: 95 IGKSTFLLQLIDEYSKTG-NVFYISGEESLRQIKQRADRLGVKSKSLYLAN----ETNLE 149 Query: 129 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 188 +++ ++V+DS+ L + + + + K+ K Sbjct: 150 KIESIILKDNPKIVVIDSIQTLYSENVNSIPGSMTQ-------IRETTLKIIEMAKSREI 202 Query: 189 LLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVV 248 + I K G + G +A+ RI ++ + Sbjct: 203 SFFIVGHI-TKDGKVAGPKMLEHMVDAVIQIEGEENSFYRI---------------IRTL 246 Query: 249 KNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGA 290 KN+ + + + F + GI+ + + E+ + G+ Sbjct: 247 KNRFGSTNEISIFDMKED-GISEITNPSEFFIGEREEKNVGS 287 >UniRef50_C4J073 Putative uncharacterized protein n=1 Tax=Zea mays RepID=C4J073_MAIZE Length = 641 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 97/285 (34%), Gaps = 45/285 (15%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 + + ++ + +L ++ K + + + + + LG GG+ G + Sbjct: 218 MPQKAKEVVPQSLQEVNKG---------VDQAQWRIPLWGSFGMEISRVLG-GGIVPGSL 267 Query: 63 VEIYGPESSGKTTLTLQVIAAA-----QREGKTCAFIDAEHALDPI--YARKLGVDIDNL 115 + + G GK++L LQ+ + +E ++ E +++ I A ++ + NL Sbjct: 268 ILVGGDPGVGKSSLMLQLASNILEGFKAKESSPVVYVSGEESIEQIGNRADRMSITSSNL 327 Query: 116 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 E L+ L + +++DS+ + ++ S + Sbjct: 328 YLYSGTDIEDILDKIQPL----SPRALIIDSIQTVYVRSFAGSAGNLSQVKECTSA---- 379 Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 L K +N + I + K G + G + + + R R+ Sbjct: 380 ---LLRFAKLTNIPVFLIGHV-TKTGDIAGPRLLEHIVDVVLYMEGERCSSHRL------ 429 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGV 280 ++ VKN+ + + F++ G+ + + Sbjct: 430 ---------LRSVKNRFGSADELGVFEMAE-FGLQAVLNPSQMFL 464 >UniRef50_Q31N87 DNA repair protein radA n=18 Tax=Bacteria RepID=Q31N87_SYNE7 Length = 478 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 94/271 (34%), Gaps = 40/271 (14%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 L + + I++GS D LG GGL G +V I G GK+TL LQ A A + Sbjct: 71 PLSAIADVSQQRIASGSGEFDRVLG-GGLVPGSLVLIGGDPGIGKSTLLLQT-ATALSQQ 128 Query: 89 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA---------LEICDALARSGAV 139 + ++ AE + + R + + L+ A + Sbjct: 129 QPILYVCAEESGQQVKLR-----WQRIAAHRSPNQADQQFYLLPEIDLDAIVAELETLRP 183 Query: 140 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 199 V ++DS+ AL A + + + + ++L L+ + + K Sbjct: 184 PVAIIDSIQALYSPALGSAPGSVAQVRECTAALMRVAKQLT-------ITLLIVGHV-TK 235 Query: 200 IGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQA 259 G + G + + ++ R R+ ++ VKN+ A + Sbjct: 236 DGAIAGPKVLEHLVDTVLYFEGDRFASHRL---------------LRSVKNRFGASQELG 280 Query: 260 EFQILYGEGINFYGELVDLGVKEKLIEKAGA 290 F+++ G+ G L + + +G Sbjct: 281 IFEMV-DRGLEEVGNPSALFLGSRDQATSGT 310 >UniRef50_Q18EU1 DNA repair and recombination protein radA n=165 Tax=Halobacteriaceae RepID=RADA_HALWD Length = 343 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 52/305 (17%), Positives = 103/305 (33%), Gaps = 61/305 (20%) Query: 4 DENKQKALAAALGQIE-KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 + + AA + F G+ + R ++ +S +D LG GG+ I Sbjct: 47 ESTASDIINAARDAADVGGFETGAAVL---QRREEIGKLSWKIPEVDELLG-GGIETQSI 102 Query: 63 VEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL--GVD--- 111 E+YG +GK+ +T Q+ Q G F+D+E P + G+D Sbjct: 103 TEVYGEFGAGKSQVTHQMAVNVQLPPEHGGLGGAAIFVDSEDTFRPERIDDMLRGLDDEI 162 Query: 112 ---------------------------IDNLLCSQPDTGEQALEICDALAR--------S 136 +D++ ++ + + + Sbjct: 163 ITDLLERREIEGTPGDDETMKALLDSFLDHIHVAKAFNSNHQILLAEKAKELARDNQDSG 222 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 V ++ VDS+ A + G + + +++ + L NT ++ NQ+ Sbjct: 223 FPVRLLCVDSLTAHFRAEYV----GRGSLAERQQKLNKHLHDLMRIGDLYNTAVLVTNQV 278 Query: 197 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK------EGENVVGSETRVKVVKN 250 FG+P GGN L ++ R+ +R+ K + N+ E ++V Sbjct: 279 ASNPDSYFGDPTQPIGGNILGHTSTFRMYLRKSKNDKRIVRLVDAPNLADGEAVMRVKDA 338 Query: 251 KIAAP 255 + Sbjct: 339 GLKPE 343 >UniRef50_B6UY45 Spindle B (Fragment) n=1 Tax=Drosophila melanogaster RepID=B6UY45_DROME Length = 404 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 74/226 (32%), Gaps = 35/226 (15%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAF 93 +S G +LD G GG+ I E+ G GKT L LQ+ Q GK A+ Sbjct: 87 RVSFGCSALDRCTG-GGVVTRGITELCGAAGVGKTQLLLQLSLCVQLPRELGGLGKGVAY 145 Query: 94 IDAEHALDPIYARKLGVD------------IDNLLCSQPDTGEQAL----EICDALARSG 137 I E + ++ + N+ E L L + Sbjct: 146 ICTESSFPARRLLQMSKACEKRHPEMELNFLGNIFVENHIEAEPLLACVINRIPRLMQQH 205 Query: 138 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 197 + +I++DSVAA+ + AR M + L + N ++ +NQ+ Sbjct: 206 GIGLIIIDSVAAIFRLY--------NDYLERARHMRRLADALLSYADKYNCAVVCVNQVA 257 Query: 198 MKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 + G E G RL + R+ + + Sbjct: 258 TRDGQD----EIPCLGLQWAHLGRTRLRVSRVPKQHRMGDQLXXXR 299 >UniRef50_B6H3A8 Pc13g13180 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H3A8_PENCW Length = 523 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 29/231 (12%) Query: 16 GQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 75 I I + IST ++D LG GG+P G + E+ G SGKT Sbjct: 83 SSINSDATTRKIGSTKRASQWNT--ISTLDPAMDALLG-GGIPTGYVTEVTGESGSGKTQ 139 Query: 76 LTLQVIAAAQRE-----GKTCAFIDAEHALDPIYARKLGV--------------DIDNLL 116 L + A Q + +I EH+L ++ + ++L Sbjct: 140 FLLSLCLAVQLPKPQGLQRRAIYISTEHSLSTPRLSQILECHPVLSTLPAEQTPSLQDIL 199 Query: 117 CSQPDTGEQALEICDAL----ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM 172 E I + + ++++DS+ + + + + + Sbjct: 200 SINAMDLESQDHILNYHLPVAIERYDIGLVIIDSITSNYRAEHESNSLQAN--AKRSSEL 257 Query: 173 SQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NPETTTGGNALKFYASV 222 ++ L + + ++ NQ+ + + G P + TG ++ S Sbjct: 258 AKLGHLLRNLAVKEDIAIVLANQVSDRFESLKGSEPASRTGFPSMSQTPSR 308 >UniRef50_Q4JXK0 DNA repair protein radA n=3 Tax=Corynebacterium jeikeium RepID=Q4JXK0_CORJK Length = 454 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 80/214 (37%), Gaps = 16/214 (7%) Query: 42 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 101 TG LD LG GG+ G V + G GK+TL L+V AA ++G T + AE ++ Sbjct: 71 PTGIGELDRVLG-GGIVPGSAVLLAGEPGVGKSTLLLEVAAAWAKKGHTVLILTAEESVG 129 Query: 102 PI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 159 + A + G D L + + E L DAL ++I+VDS+ + Sbjct: 130 QVRHRAERTGALHDKLYLASENDLENGLAQVDAL----NPELIIVDSLQTMQATGVEGVA 185 Query: 160 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 219 G + L K S T +I + + K G + G + + + Sbjct: 186 GGVAQT-------RAVTSTLTTLAKMSGTPVIAVGHV-TKEGTVAGPRTIEHLVDVVLNF 237 Query: 220 ASVRL-DIRRIGAVKEGENVVGSETRVKVVKNKI 252 + +R + +K + + I Sbjct: 238 EGDKHSSMRFLRGIKNRFGATDEVGCFEQTAHGI 271 >UniRef50_C7NB45 DNA repair protein radA n=11 Tax=Fusobacteriaceae RepID=C7NB45_LEPBD Length = 452 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 17/245 (6%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 SI ++ E + T D LG GGL G +V I G GK+T LQ+ Sbjct: 54 SIKKITEIEIEKEFRMVTPFEEFDRVLG-GGLIKGEVVLITGSPGIGKSTFLLQLSQEYA 112 Query: 86 REGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 143 + G ++ E + I A ++ V +NL + +E +++ V+V Sbjct: 113 KIG-NVFYVSGEESPRQIKQRAERVNVKSENLYILN----DTNIEKIESVILKEKPKVVV 167 Query: 144 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 203 +DS+ L + + + + K+ K++ + + K G + Sbjct: 168 IDSIQTLYSENVNSIPGSVTQ-------IRETTLKIIEIAKKNEIAFYIVGHV-TKDGKL 219 Query: 204 FGNPETTTGGNALKFYASVR-LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQ 262 G +A+ R I ++K + + +N I+ +EF Sbjct: 220 AGPKLLEHMVDAVLQIEGEENSYFRIIRSIKNRYGSTNEISIFDMKENGISEVKNPSEFF 279 Query: 263 ILYGE 267 I E Sbjct: 280 ISDRE 284 >UniRef50_D2QF93 DNA repair protein RadA n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QF93_9SPHI Length = 461 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 96/303 (31%), Gaps = 47/303 (15%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 95 + ++T L+ LG GG+ G +V I G GK+TL LQ+ + G ++ Sbjct: 73 EEQPRVTTTDGELNRVLG-GGIVAGSLVLIGGEPGIGKSTLLLQIALSLA--GLRVLYVS 129 Query: 96 AEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 153 E + I A +L + E + + + +V+++DS+ + Sbjct: 130 GEESEQQIKMRAERLDAPTSDCHVM----TETSTQNIFRVVEHFEPEVLIIDSIQTMQSS 185 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 213 G S + K+S + I I K G + G Sbjct: 186 LVESGAGSVSQVRECTAEF-------MKYAKESGVPVFMIGHI-TKEGSLAGPKVLEHMV 237 Query: 214 NALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYG 273 + + + R RI ++ KN+ + + +++ G G+ Sbjct: 238 DTVLTFEGDRHTTYRI---------------LRTTKNRFGSTDELGIYEM-LGSGLRQVT 281 Query: 274 ELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPN 333 ++ + ++ +G + L+ N E + V P Sbjct: 282 NPSEILISQRDEALSG--------------VTIGSMLEGNRPLMIESQALVSVATYGTPQ 327 Query: 334 STP 336 + Sbjct: 328 RSS 330 >UniRef50_Q4RWF9 Chromosome undetermined SCAF14988, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodon nigroviridis RepID=Q4RWF9_TETNG Length = 329 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 92/288 (31%), Gaps = 56/288 (19%) Query: 4 DENKQKALAAALGQIEKQFGKG-SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62 Q+ L E + + L + ++ TI T S LD ALG GG P+GR+ Sbjct: 45 QPEAQEVLQGVRRAEEGGAPCSCTALELLQKEEEELRTIVTFSSQLDAALG-GGAPVGRM 103 Query: 63 VEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLGVD----- 111 E+ G GKT L LQ+ Q G ++D E L Sbjct: 104 TEVCGVPGVGKTQLCLQLAVDVQVPHCFGGLGAQVVYVDTEGGFRLQRLLDLAAAAVNHC 163 Query: 112 ---------------------IDNLLCSQPDTGEQALEICD----ALARSGAVDVIVVDS 146 + N+ + + L L+ V ++VVDS Sbjct: 164 SLLAEDQEQRVAMETFTVETILSNVFVVRCHDYLELLAELHLMPGFLSAHPGVRLLVVDS 223 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 VA+ E + R++S ++L + ++ NQ+ ++ + Sbjct: 224 VASPFRPLLDE-------LSQRTRLLSGLAQQLVAMAASRDMAVVVTNQMTTRV-WGTHS 275 Query: 207 PETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 G+ A++RL + G +VK+ Sbjct: 276 EVVPALGDTWGHAAAIRLRL----------QWEGPRRLATIVKSPCHR 313 >UniRef50_C5Z4B1 Putative uncharacterized protein Sb10g003620 n=1 Tax=Sorghum bicolor RepID=C5Z4B1_SORBI Length = 673 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 36/241 (14%) Query: 47 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA-----QREGKTCAFIDAEHALD 101 + LG GG+ G +V + G GK++L LQ+ + +E ++ E +++ Sbjct: 285 EISRVLG-GGIVPGSLVLVGGDPGVGKSSLMLQLASNILEGFKAKESSPVVYVSGEESIE 343 Query: 102 PI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 159 I A ++ + NL E L+ L + +++DS+ + ++ Sbjct: 344 QIGNRADRMSITSSNLYLYSGTDIEDILDKIQPL----SPKALIIDSIQTVYVRSFAGSA 399 Query: 160 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 219 S + L K +N + I + K G + G + + + Sbjct: 400 GNLSQVKECTSA-------LLRFAKLTNIPVFLIGHV-TKTGDIAGPRLLEHIVDVVLYM 451 Query: 220 ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLG 279 R R+ ++ VKN+ + + F++ G+ + Sbjct: 452 EGERCSSHRL---------------LRSVKNRFGSTDELGVFEMAE-FGLQAVLNPSQMF 495 Query: 280 V 280 + Sbjct: 496 L 496 >UniRef50_D1BVG5 DNA repair protein radA n=6 Tax=Actinomycetales RepID=D1BVG5_XYLCX Length = 498 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 59/327 (18%), Positives = 103/327 (31%), Gaps = 54/327 (16%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 + + + E + TG LD LG GGL G +V + G GK+TL L+V + Sbjct: 77 RSAARPIAEIDVESARSAPTGVDELDRVLG-GGLVPGAVVLMAGEPGVGKSTLLLEVASQ 135 Query: 84 AQR-------------EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 130 R +T ++ E + + R V + E L Sbjct: 136 YARGVGAPKGGLRAVGGERTVLYVTGEESAGQVRLRAERVGAL--APTLLLAAETDLGTV 193 Query: 131 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 190 + + ++VVDSV + G S + A L K+ + Sbjct: 194 LGHVEATSPALLVVDSVQTIASAEVDGVAGGVSQVREVAAA-------LIAVAKERQVPV 246 Query: 191 IFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN 250 + + + K G + G + + + R R+ V+ VKN Sbjct: 247 LLVGHV-TKDGTVAGPRTLEHLVDVVCQFEGDRHSRLRM---------------VRAVKN 290 Query: 251 KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWL 310 + + F++ GI + L + G+ + L Sbjct: 291 RFGPTDEVGCFELTE-TGITGLTDPSGLFLSHLGAGVPGSCVTVT--------------L 335 Query: 311 KDNPETAKEIEKKVRELLLSNPNSTPD 337 + A EI+ V L+NP T + Sbjct: 336 EGRRPLALEIQSLVAPSPLANPRRTTN 362 >UniRef50_A3MXS9 Rad51-like protein n=6 Tax=Thermoproteaceae RepID=A3MXS9_PYRCJ Length = 314 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 82/244 (33%), Gaps = 22/244 (9%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVE 64 + K L A+ ++ G + E RS TG D G+ I E Sbjct: 53 DRAVKILQQAIQRV----GTTRPLTARELRSQQRRVFKTGVSEFDEKTPWRGIREAFIYE 108 Query: 65 IYGPESSGKTTLTLQVIAAAQREGK--TCAFIDAEHALD----PIYARKLGVDIDN---- 114 G +GK+ L Q+ AA +G +ID E + A++ G+D+D Sbjct: 109 FAGEFGAGKSMLAHQLSVAALAQGFTTRVVYIDTEGTFNDGLVEAVAKRFGLDVDKALEA 168 Query: 115 LLCSQPDTGEQALEICDALARS---GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM 171 ++ QP Q +I + V+D++ AL + G + + Sbjct: 169 IVVYQPANVVQLEQIVKFDLPRHIAEGCRLAVIDTITALYRAEFV----GREMLAARQQR 224 Query: 172 MSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 231 + + L + + + NQ+ + GGN L + R + R Sbjct: 225 IHYLVDWLRRHARTFGLTSVLTNQVMDVPEAFSV-GKRPAGGNVLAHAVNARFMMARPNK 283 Query: 232 VKEG 235 K Sbjct: 284 AKAE 287 >UniRef50_Q93YY9 RAD51C protein n=2 Tax=Chlamydomonas reinhardtii RepID=Q93YY9_CHLRE Length = 352 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 61/272 (22%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTC 91 I + + LD LG GG+ G++ E G GKT L +Q+ Q Sbjct: 90 TPRIISMARDLDALLG-GGVAAGQVTEFCGVPGVGKTQLGMQLAVNVQIPRSLSGPEGQA 148 Query: 92 AFIDAEHALDPIYARKLG-----------------------------VDIDN----LLCS 118 +ID E + + ++N + Sbjct: 149 VYIDTEGSFMAERCADIAEGAVRHVQSILEKKASMGQPELLHDGERPFTLENVMRGIYLF 208 Query: 119 QPDTGEQALEICDALAR----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQ 174 + + L + + L R V +IV+DSV + + M R+++ Sbjct: 209 RVHDHVEQLGLVNMLPRFLEQYSQVRLIVIDSVTFHFRQDFPD-------MAQRTRVVTG 261 Query: 175 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 234 ++L + N ++ +NQ+ K+ G+ G + AS R+ + Sbjct: 262 MAQQLISLAQTHNVAVVLMNQVTTKVLEGGGSKLVPALGESWGHAASTRVMLTWG----- 316 Query: 235 GENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 +E +++K+ P A F + Sbjct: 317 ----PDNERHAQMIKS-PHLPLGDAAFAVTAD 343 >UniRef50_B1C8K3 DNA repair protein radA n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8K3_9FIRM Length = 469 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 48/335 (14%), Positives = 103/335 (30%), Gaps = 47/335 (14%) Query: 4 DENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 63 E +K L + + L + + + +T LD LG GG+ +V Sbjct: 47 SEFSKKELDLVNSK--SSVFTPKVTNLKDVDTKEDMRFTTSISELDNVLG-GGIVASSLV 103 Query: 64 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI--DNLLCSQPD 121 + G GK+TL +Q GK + +E +L + R +D+ ++L Sbjct: 104 LVGGEPGIGKSTLLMQTAHNVSMIGKRVLYASSEESLSQLKLRLDRLDLKGSDILVLSNT 163 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 EQ +E + D++++DS+ + + + + L Sbjct: 164 DIEQIIESA----KENKADLLIIDSIQTVRSANIPSAPGTITQVRECTNL-------LMN 212 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 K +NT + + I K G + G + + ++ S S Sbjct: 213 FAKATNTSVFIVGHI-TKQGTIAGPKTIEHMVDTVMYFES---------------ESNSS 256 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQ 301 +++ KN+ + + F++ + + + Sbjct: 257 LRILRLSKNRFGSSEEIGVFEMTRKGLECVTNP---------------SKLLLEDRENRS 301 Query: 302 GKANATAWLKDNPETAKEIEKKVRELLLSNPNSTP 336 + + ++ N EI+ P Sbjct: 302 YGSVICSIMEGNRSVLIEIQALAMMSSFQVPRRVS 336 >UniRef50_O75771 DNA repair protein RAD51 homolog 4 n=32 Tax=Euteleostomi RepID=RA51D_HUMAN Length = 328 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 79/278 (28%), Gaps = 26/278 (9%) Query: 2 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGR 61 + AL L F L E+ +STG SLD L GL G Sbjct: 44 GLSYKALVALRRVLLAQFSAFPVNGA-DLYEELKTSTAILSTGIGSLDKLL-DAGLYTGE 101 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIYARKL-----------G 109 + EI G SGKT + L + A + ++D+ L +L Sbjct: 102 VTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQA 161 Query: 110 VDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS----VAALTPKAEIEGEIGDSHM 165 + + Q L++ L R + S V + + + Sbjct: 162 EALRRIQVVHAFDIFQMLDVLQEL-RGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ 220 Query: 166 GLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD 225 +M Q R+L + ++ N I G + F S R+ Sbjct: 221 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSG---RLKPALGRSWSFVPSTRIL 277 Query: 226 IRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 + I G G + K+ Q I Sbjct: 278 LDTIE----GAGASGGRRMACLAKSSRQPTGFQEMVDI 311 >UniRef50_C9DGK5 UvsX RecA-like recombination protein n=1 Tax=Deftia phage phiW-14 RepID=C9DGK5_9CAUD Length = 366 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 53/343 (15%), Positives = 113/343 (32%), Gaps = 21/343 (6%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA---GGL 57 MA + + AA +++ + DV S+ L++ L GG+ Sbjct: 1 MATSSLAARLIKAAGKS------HATMLSASDLGRKDVICHSS-IPILNVMLSGELNGGI 53 Query: 58 PMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKLGVD-IDN 114 G I ++ G + KT + ++ + A C F D E + +L D + Sbjct: 54 TCG-ITQVVGDSRTFKTLICIEAVVAYLEHDPDAICIFFDCEFGGLAAFEARLTPDQLAR 112 Query: 115 LLCSQPDTGEQ---ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGL--AA 169 ++ + E + + G + VDSV+ + K E E + + A Sbjct: 113 VVHVPFEDLEDLKFQMTKMVENVQRGEKVIFFVDSVSQVASKKEAENALNSNEAADLTRA 172 Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 229 R M+ R + L N L IN + G ++ R Sbjct: 173 REMNSFFRIITPKLNIRNIPLFVINSYYEDTTSNYAEVIIKGGKQIFLSSDALWFVTRAQ 232 Query: 230 GAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAG 289 + + + G ++K++ + ++ Y GI+ L++L + ++ Sbjct: 233 EKDEATKELTGWSFNYAMMKSRFCREKSKMSIRVTYAGGIDRTSSLLELARESGYLDMPT 292 Query: 290 AWYSYKGEKI--GQGKANATAWLKDNPETAKEIEKKVRELLLS 330 + + K+ G + + + E +++ Sbjct: 293 SGFYQFNAKVIPGATEKKFRKKELQDTANWEHWELLLKQEGFQ 335 >UniRef50_A5FVJ6 DNA repair protein radA n=4 Tax=Bacteria RepID=A5FVJ6_ACICJ Length = 466 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 91/280 (32%), Gaps = 28/280 (10%) Query: 21 QFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 80 Q G+G + I G D LG G +P I + G GK+TL LQ Sbjct: 50 QAGRGIDFVGLAGETPPPPRIPLGIEEFDRVLGGGMVPASAI-LVGGDPGIGKSTLLLQA 108 Query: 81 IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 140 A G+ ++ E ++ I R +D+ + +I +L Sbjct: 109 AARLAASGRRVLYVSGEESVAQIRLRAERLDLKT-APVNLASATVLADILGSLRAERDAA 167 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 ++V+DS+ + + S + A + QA K L+ + + K Sbjct: 168 LVVIDSIQTIWDETVESAPGTVSQVRANAFALIQA-------AKTQGFALMLVGHV-TKE 219 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRV-KVVKNKIAAPFKQA 259 G + G + + + R G + R+ + KN+ A + Sbjct: 220 GALAGPRVLEHMVDVVLHFEGDR----------------GHQFRILRGAKNRFGATDEIG 263 Query: 260 EFQILYGEGINFYGE-LVDLGVKEKLIEKAGAWYSYKGEK 298 F++ + L + + + + +G + Sbjct: 264 VFEMTGRGLAEVANPSALFLAERHGNVTGSAVFAGLEGSR 303 >UniRef50_Q8GXF0 DNA repair protein RAD51 homolog 3 n=15 Tax=Magnoliophyta RepID=RA51C_ARATH Length = 363 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 79/231 (34%), Gaps = 47/231 (20%) Query: 34 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------ 87 + I+T LD LG GG+ + EI G GKT + +Q+ Q Sbjct: 98 EEESLPRITTSCSDLDNILG-GGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGL 156 Query: 88 GKTCAFIDAEHALDPIYARKLGVD----------------------------IDNLLCSQ 119 G +ID E + A ++ ++N+ + Sbjct: 157 GGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFR 216 Query: 120 PDTGEQALEICDALAR----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 + + + + + L + + V V++VDS+ + + + R++S+ Sbjct: 217 VCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDD-------LAQRTRVLSEM 269 Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI 226 K K+ + ++ +NQ+ K G++ + R+ + Sbjct: 270 ALKFMKLAKKFSLAVVLLNQVTTKF-SEGSFQLALALGDSWSHSCTNRVIL 319 >UniRef50_D1V789 DNA repair protein radA n=1 Tax=Frankia sp. EuI1c RepID=D1V789_9ACTO Length = 507 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 16/225 (7%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 91 E STG LD LG GG+ G ++ + G GK+TL L+V A + + G Sbjct: 103 EVDPSPAARRSTGVDELDRVLG-GGVVPGAVILLAGEPGVGKSTLLLEVAARSAQAGHRA 161 Query: 92 AFIDAEHALDPIYAR--KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 149 + E ++ + R + G +L + E L ++VVDSV Sbjct: 162 LVVTGEESVAQVRLRAGRTGTLHADLWLA----AETDLGALLGHVEEVQPTLLVVDSVQT 217 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 209 ++ G + + A + +A + L I + + K G + G Sbjct: 218 ISAAGVDGVAGGVTQVREVAAALIRAAKAL-------GLATILVGHV-TKDGSVAGPRLL 269 Query: 210 TTGGNALKFYASV-RLDIRRIGAVKEGENVVGSETRVKVVKNKIA 253 + + + + +R I +VK ++ +N I Sbjct: 270 EHLVDVVLHFEGDQQTALRMIRSVKNRYGPTDEVGCFEMNENGIW 314 >UniRef50_D1P982 DNA repair protein radA n=1 Tax=Prevotella copri DSM 18205 RepID=D1P982_9BACT Length = 494 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 56/314 (17%), Positives = 103/314 (32%), Gaps = 55/314 (17%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 + M+L + ++D I L+ LG G +P G I + G GK+TLTLQ I Sbjct: 71 DAAPMKLRDISAIDEPRIDMRDEELNRVLGGGMVP-GSITLLGGEPGIGKSTLTLQTILN 129 Query: 84 AQREGKTCAFIDAEHALDPIYAR-----------KLGVDIDNLLCSQPDT---------- 122 + ++ E + I R + G D L + + Sbjct: 130 MT--DRRILYVSGEESAHQIKLRADRLAKGQAMLREGSSADTLKTASLSSEGAFDHITVL 187 Query: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 E LE + + A +IV+DS+ + + S + A L Sbjct: 188 CETQLEKIFSHIQEVAPQLIVIDSIQTIAAEEVDSSPGSVSQVRECAAS-------LLRF 240 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSE 242 K S +I I I K G + G + + + + + RI Sbjct: 241 AKTSGIPVILIGHI-NKEGTLAGPKILEHIVDTVIQFEGDQHYMYRI------------- 286 Query: 243 TRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQG 302 ++ +KN+ + + ++++ G G+ +L + E +G I Sbjct: 287 --LRSIKNRFGSTSELGIYEMMQG-GLRQVSNPSELLLTEDHDGLSGV-------AISAA 336 Query: 303 KANATAWLKDNPET 316 +L + Sbjct: 337 IEGVRPFLVETQAL 350 >UniRef50_D1B9H8 DNA repair protein radA n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9H8_THEAS Length = 450 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 102/307 (33%), Gaps = 47/307 (15%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 92 + + I +G LD+ LG G LP G +V + G GK+TL LQ +A + G Sbjct: 57 EEAPPERRILSGLPDLDLVLGGGWLP-GGVVLLGGEPGVGKSTLLLQSCSAVAQGGTKVV 115 Query: 93 FIDAEHALDPI--YARKLGVDI-DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 149 ++ E I A++L + + +N D +A+ +A +++VVDSV A Sbjct: 116 YVSGEETPSQIASRAKRLQLTLGENFKVLVCDDVMKAIGAAEA----HGAELLVVDSVQA 171 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 209 L + + + G K++ + I I K G + G Sbjct: 172 LRHPDASGWPGSPNQ-------VRAVAENVIGFAKRTGASAVMIGHI-TKQGAIAGPKAL 223 Query: 210 TTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 + + + R R+ ++ KN+ + FQ+ Sbjct: 224 EHLVDVVLVFFGERTSRNRL---------------LRAEKNRFGGTEELGIFQMC----- 263 Query: 270 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 329 + L+ + + GE G ++ + EI+ + Sbjct: 264 -----------ERGLVPVSDPSALFWGEDEGVAGVAMGVPMEGSRPILSEIQALTCQSPY 312 Query: 330 SNPNSTP 336 P Sbjct: 313 PYPKRAS 319 >UniRef50_A7NKT5 DNA repair protein radA n=6 Tax=Bacteria RepID=A7NKT5_ROSCS Length = 464 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 30/232 (12%) Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCS 118 +V I G GK++L LQV A ++ AE ++ I A ++G++ + LL Sbjct: 90 SVVLIGGEPGIGKSSLLLQVAAHFADHVGPALYVSAEESVQQIKLRAARMGLEPERLLVY 149 Query: 119 QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 178 E L + ++VVDS+ + + S + A + Sbjct: 150 ----SETNLNAILDQVAAIKPQLVVVDSIQTVYLEELSSAAGSVSQVREGA-------LR 198 Query: 179 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 L K+ + + + K G + G + + + R R+ Sbjct: 199 LLRVAKEHAIPMFLVGHV-TKEGAIAGPRVLEHIVDVVLYLEGDRFHQYRL--------- 248 Query: 239 VGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGA 290 ++ VKN+ + + F++ G+ + E+ + G+ Sbjct: 249 ------LRGVKNRFGSTDEVGVFEMT-AHGLREVPNPSQAFLSERTVNAPGS 293 >UniRef50_Q487B6 DNA repair protein radA n=12 Tax=Alteromonadales RepID=Q487B6_COLP3 Length = 462 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 104/299 (34%), Gaps = 42/299 (14%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 ++ E S+D E STG LD L GG+ G + I G +GKTTL ++A + Sbjct: 66 KINEIESIDAEKRSTGIGELDRVL-CGGVTTGSVNIISGDPGAGKTTLLSDLVARMSKT- 123 Query: 89 KTCAFIDAEHALDP--IYARKLGVDI--DNLLCSQPDTGEQALEICDALARSGAVDVIVV 144 + AE +L +L +D DNL E ++E + V+ Sbjct: 124 HASLYCTAEESLSQFKNRVHRLKLDYDEDNLYLL----AETSVEAIIDELDKNKIKFAVI 179 Query: 145 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 204 DS+ A+ + S + +A+ ++Q KQ+N + I + K + Sbjct: 180 DSIQAVVTENANGSPGSPSQVKSSAQSLTQ-------YCKQNNVTMFIIAHV-NKNNEIA 231 Query: 205 GNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL 264 G +AL + IR + A KN+ F++ Sbjct: 232 GPQTLVHIVDALLHIDTNDGQIRTLRAN----------------KNRFGDIDTVGIFKMC 275 Query: 265 YGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKK 323 ++ VD + L +G+ G I + L + E E + Sbjct: 276 ERGMLS-----VDNPSEIFL---SGSSTESPGSTITCIRKGNRNLLLEIQCLTTETEAE 326 >UniRef50_B9LPC6 DNA repair and recombination protein RadB n=7 Tax=Halobacteriaceae RepID=B9LPC6_HALLT Length = 235 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 33/244 (13%) Query: 38 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 97 + I TG +D LG GG G + ++YGP ++GKT L L G +ID E Sbjct: 2 SDPIPTGCRPVDDLLG-GGFERGVVTQVYGPPAAGKTNLALAAAVEVAAGGDRALYIDTE 60 Query: 98 HALDPIYARKL------GVDID--------NLLCSQPDTGEQALEIC-DALARSGAVDVI 142 L ++ D+D L+ S+ + E DA + +++I Sbjct: 61 G-LSIDRFEQMAAGRANRPDVDETVEEIASRLVISEAYDFDDQREAVRDAEELAEEIELI 119 Query: 143 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV 202 V+DS GD+ G + R +++ + L ++ + ++ NQ+ Sbjct: 120 VLDSATGFYRLE----RAGDTEGGESLRKVAKQVTHLLSLARRHDIAVVITNQVFTDPDS 175 Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQ 262 + + GGN L + + + R G RV + K++ A FQ Sbjct: 176 ---DRDRALGGNTLNHWTGAIVRVDRFR---------GGNRRVTLEKHRSKPAGDTATFQ 223 Query: 263 ILYG 266 I+ Sbjct: 224 IVAD 227 >UniRef50_B9RR28 DNA repair protein rad51, putative n=1 Tax=Ricinus communis RepID=B9RR28_RICCO Length = 294 Score = 117 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 88/287 (30%), Gaps = 80/287 (27%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 I E K K + AA + F S + +++ I++GS LD L GG+ G Sbjct: 67 GISEAKVDKIIEAASKLVPLGFTSASQLHAQ---RLEIIQITSGSRELDKIL-EGGIETG 122 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIY----ARKLGV 110 I EIYG SGKT L + Q +IDAE P A + G+ Sbjct: 123 SITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGL 182 Query: 111 D----IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG 166 + ++N+ ++ + + A Sbjct: 183 NGADVLENVAYARAYNTDHQSRLLLEAASMM----------------------------- 213 Query: 167 LAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGV---MFGNPETTTGGNALKFYASVR 223 ++ NQ+ ++ G GGN + ++ R Sbjct: 214 -------------------FGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTR 254 Query: 224 LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 L +R+ E R+ V + +A FQI + Sbjct: 255 LALRKGR----------GEERICKVISSPCLAEAEARFQISAEGVTD 291 >UniRef50_B6JWI2 DNA repair and recombination protein radA n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JWI2_SCHJY Length = 358 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 106/311 (34%), Gaps = 64/311 (20%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 K + + + Q++K I + + +TG +D AL GG+ + I EI Sbjct: 46 KLEEVQNLIEQLKKALLPQRITP----DARETHFFTTGDTEIDKAL-HGGIALDHITEIS 100 Query: 67 GPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL------------ 108 G SGK+ +Q+ Q + FI E L+ +L Sbjct: 101 GESGSGKSQFCIQLCLTVQLPKSVGGLDRAAVFISTESGLETRRLFQLAKFLSLQYPNDD 160 Query: 109 --------GVDIDNLLCSQPDTGEQALE-ICDALARSGAVDVIVVDSVAALTPKA----- 154 G + +LC ++ E +E L + + +IV+DSVAA Sbjct: 161 LSYLSRHPGDRVYTILCPDLESQEHIIEYQLPILMQRVNIGLIVLDSVAANYRAELRYSR 220 Query: 155 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG--------- 205 ++ +++ L + N ++ NQ+ ++ + Sbjct: 221 NHPNASSLGNIATRGNQLAKLASNLRELAHKHNAAVVIANQVSDRVSRSYDQIGLFSLDY 280 Query: 206 -------------NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKI 252 +P+T + G + RL + + +++ ++++V + I Sbjct: 281 QSQWFNGWDDTDIDPKTPSLGLVWTNNVTTRLALLKRPNSATRKSL----RKLRIVYSPI 336 Query: 253 AAPFKQAEFQI 263 A P + + I Sbjct: 337 A-PTSEIDIAI 346 >UniRef50_UPI00005020FA similar to RAD51 homolog protein isoform 1 (LOC364752), mRNA n=2 Tax=Mammalia RepID=UPI00005020FA Length = 313 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 95/275 (34%), Gaps = 39/275 (14%) Query: 1 MAIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPM 59 M++ E K K L A + F I L +TG+ LD L G + Sbjct: 62 MSVSEAKADKILTEAAKLVPMGF----ITALVSPTLFQNH--TTGTEELDKLL-QGRMET 114 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD--IDNLLC 117 G +EI+G + KT + + Q + D E + +DN Sbjct: 115 GSTIEIFGAFQTRKTQICHTLAVTWQ-------YNDTESTFRLELLLAVADSDVLDNEAY 167 Query: 118 SQPDTGEQALEICDA---LARSGAVDVIVVDSVAALTP-KAEIEGEIGDSHMGLAARMMS 173 +Q Q +++ + ++VDS AL + GE+ M + Sbjct: 168 AQGFNTNQQIQLLYQASAMMVEPRYAFLIVDSATALYRTEYSCHGELSARQMH------A 221 Query: 174 QAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT--TGGNALKFYASVRLDIRRIGA 231 + +R L + ++I NQ+ ++ GGN + ++ RL +R+ Sbjct: 222 RFLRMLLQLAHEFGVIVITTNQVVAEVDGAAMFVADPKKIGGNIITHESTTRLYLRKGR- 280 Query: 232 VKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 ETR+ + + P K+A I Sbjct: 281 ---------GETRICKIYDSPCLPEKEAMLAINAN 306 >UniRef50_Q5BL30 X-ray repair complementing defective repair in Chinese hamster cells 3 n=6 Tax=Clupeocephala RepID=Q5BL30_DANRE Length = 352 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 85/261 (32%), Gaps = 44/261 (16%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GK 89 +S LD L GGLP+ I E+ G ++GKT LQ+ + Q Sbjct: 77 EPGHRLSFACPVLDG-LMRGGLPLRGITELAGESAAGKTQFCLQLCLSVQYPQEHGGLNS 135 Query: 90 TCAFIDAEHALDPIYARK-------LGVDI-----------DNLLCSQPDTGEQA----L 127 +I E + R+ L D+ DN+ E Sbjct: 136 GAVYICTEDSFPIKRLRQLITQQPRLRPDLPPALIHSLRFSDNIYIEHAADLEALQVCVS 195 Query: 128 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 187 + L + G V ++VVDSVAAL E +R + L Sbjct: 196 QRVPVLLKRGLVRLLVVDSVAALFRSEFQADEAVQ-----RSRHLLAFSSTLHRLSHTYA 250 Query: 188 TLLIFINQIRMKIGVMF---------GNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 ++ +NQ+ + G+ G A VRL +RR+ + ++ Sbjct: 251 APVLCVNQVTDVVDGPNPGRCDYGLVGSKVLPALGIAWANQVMVRLMLRRLAGQVKSDSR 310 Query: 239 VGSETRVKVVKNKIAAPFKQA 259 + +++VV P Sbjct: 311 SCAPRKLEVV-FAPHLPRSSC 330 >UniRef50_O27728 DNA repair and recombination protein radB n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=RADB_METTH Length = 234 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 92/234 (39%), Gaps = 27/234 (11%) Query: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 96 + I T S+D LG GG+ I + YGP SGKT +T+++ R GK FID Sbjct: 9 ENRRIPT-ESSIDRILG-GGVERRTITQFYGPPGSGKTNITIKLAVETARRGKNTVFIDT 66 Query: 97 EHALDPIYARKLGVDI-----DNLLCSQPDTGEQALEICDA-----LARSGAVDVIVVDS 146 E L R++ DI D+++ +P + + E + D++V+DS Sbjct: 67 EGGLSVERIRQVSGDIFDRVADSIIVFEPSSFTEQGEALQRTFSFLKTHGDSTDLVVLDS 126 Query: 147 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 206 AL E + + + M L ++ + + NQI G Sbjct: 127 AVALYRLKEGNASSFNLD-------LGRQMFLLLQMARRFDLAAVITNQIYSITGDDGRE 179 Query: 207 PETTTGGNALKFYASVRLDIRRIG--------AVKEGENVVGSETRVKVVKNKI 252 + GG L++++ V +++ + + GS ++V + I Sbjct: 180 YVSPVGGTLLRYWSKVMVELEMGERPGERFAVLRRHRNRLEGSRVGFRIVADGI 233 >UniRef50_UPI0001AF06D9 RecA-like recombinase n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF06D9 Length = 734 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 72/265 (27%), Positives = 113/265 (42%), Gaps = 33/265 (12%) Query: 1 MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGA---GGL 57 M ++ N L+A +EK G E+ + TG L+ A+ GG+ Sbjct: 1 MIMEPN----LSALADDLEKLIGDN------EETQTVTNWLDTGDPELNFAISGRYDGGI 50 Query: 58 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDN--L 115 P GRIVE+YGP SSGKT ++ AQ G F D E + D A+ LG+ + Sbjct: 51 PYGRIVEMYGPPSSGKTAEATDLMIRAQEAGGIAMFFDWERSFDINLAKNLGLKTERPFW 110 Query: 116 LCSQPDTGEQ-------ALEICD--ALARSGAVDVIVVDSVAALTPKAEIEGE------- 159 + +P+T E+ A+E+ A A + V DSVA+ P++ Sbjct: 111 IYKKPETWEEGNVLAMRAVELIRNSATIPDDAPIICVFDSVASAIPQSVYYDNKGKKREI 170 Query: 160 --IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALK 217 S AR S +++ +A ++ N +++NQ R KIGVMFG+P + Sbjct: 171 DTFNMSDNTALARASSTSLKVIAQTAEKYNATFLYLNQQRTKIGVMFGDPTCLRAEVQVP 230 Query: 218 FYASVRLDIRRIGAVKEGENVVGSE 242 F +++I K + V Sbjct: 231 FVDGTSATMKQIVDGKISKEVWSWN 255 Score = 61.8 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 68/146 (46%), Gaps = 9/146 (6%) Query: 210 TTGGNALKFYASVRLDIRR---IGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 T GG++ ++YASVR+ + R + V + VG + K+VK K+ PF++ ++ + Sbjct: 583 TPGGSSFEYYASVRIALGRTKLMETVNGKKQFVGQDIATKIVKTKLTKPFQETTMRMWFD 642 Query: 267 EG----INFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEK 322 + + + LV+ + +++++GA+ + K K + LK +P +++ Sbjct: 643 KNGVAFFDRHYNLVEFLKAKGILKQSGAYIEWTDGKKYHLK-SLCDKLKADPTGLQQLRA 701 Query: 323 KVRELLLSNPNSTPDFSVDDSEGVAE 348 + + + + + +E E Sbjct: 702 LI-PKISPSADDIEVTPLMSNEDEME 726 >UniRef50_Q6C269 YALI0F10307p n=1 Tax=Yarrowia lipolytica RepID=Q6C269_YARLI Length = 421 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 89/245 (36%), Gaps = 32/245 (13%) Query: 5 ENKQKALAAALGQIEKQFGKGSIMR-----LGEDRSMDVETISTGSLSLDIALGAGGLPM 59 E K +E + + M + +R ++ ISTG +D + GG P Sbjct: 50 EQKVLKCHQLATDLESRLSEHISMERVDFDVDSERERPLDAISTGVRKIDTVMN-GGFPT 108 Query: 60 GRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKL----- 108 G + E+ G ++GK+ LQ+ Q GK FI E L+ ++ Sbjct: 109 GTLCEVAGESAAGKSHFLLQLCVNVQLARGEGGLGKKAVFISTESGLETRRLVQMMDHVI 168 Query: 109 -----GVDIDNLLCSQPDTGEQALEI----CDALARSGAVDVIVVDSVAALTPKAEIEGE 159 + + ++ EQ + L + ++V+DS+AA E+ + Sbjct: 169 KLGHDNISLHHVSFIACKDLEQQDRVFQYNLPNLLEDSSYGLVVIDSLAAHYRSEELTSK 228 Query: 160 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG---VMFGNPETTTGGNAL 216 S + + + + L G ++ N ++F NQI G + T L Sbjct: 229 GDFSS---RDKRLLRTLHHLKGLARKHNVAVVFANQISALPGRELTIGAEFLPTLLEKQL 285 Query: 217 KFYAS 221 +++ Sbjct: 286 PYFSG 290 >UniRef50_Q555F1 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q555F1_DICDI Length = 458 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 21/193 (10%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------ 89 + TI++G SLD L GGLP+ I+EIYG S+GK+TL++ +++ + K Sbjct: 80 EKIPTITSGITSLDYQLQIGGLPLNHIIEIYGDSSTGKSTLSMFILSNLIKNNKSKQEQR 139 Query: 90 --------------TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 135 +ID+E++ + +A K+G+++ N QP+ E+A E+ + Sbjct: 140 LSSSSSSLSSSQEENVLYIDSENSFNSEWASKIGMNLSNCTVFQPNNSEEAFELIKKSLK 199 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSH-MGLAARMMSQAMRKLAGNLKQSNTLLIFIN 194 + VI++DS+++L +IE + ++H + ++ + +++ L SN IF N Sbjct: 200 NQIFKVIILDSLSSLMSIKDIESNLVENHYQNIGFDWITSNLNEISNLLIDSNCCFIFTN 259 Query: 195 QIRMKIGVMFGNP 207 Q+R + Sbjct: 260 QMRYSFNKDNKDH 272 >UniRef50_B6Q8E5 DNA repair protein (Rad57), putative n=2 Tax=Trichocomaceae RepID=B6Q8E5_PENMQ Length = 571 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 72/212 (33%), Gaps = 26/212 (12%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-- 87 TIST +LD LG GG+P G + EI G SGKT L ++ AQ Sbjct: 101 GSRLDLSRWSTISTLDPALDDLLG-GGIPTGYLTEITGESGSGKTQFLLNLLLVAQLPSP 159 Query: 88 ---GKTCAFIDAEHALDPIYARKLGV--------------DIDNLLCSQPDTGEQALEIC 130 G+ +I E +L ++ + + N+L E I Sbjct: 160 HGLGRKAIYISTEASLSTPRLSQILLSHPYLSKLPAAERPSLANVLSITAIDLETQDHIL 219 Query: 131 DA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 + V ++V+DS+AA + + +++ L + Sbjct: 220 NYQLPVAISRYNVGLVVIDSIAANYRAEHASN--SMQSLSARSGELAKLGHMLRNLAARE 277 Query: 187 NTLLIFINQIRMKIGVMFGNPETTTGGNALKF 218 + ++ NQ+ + M P +F Sbjct: 278 DIAIVVANQVSDRFDGMVDTPAAVHQQQYGRF 309 >UniRef50_B5LW25 RAD51D protein n=4 Tax=BEP clade RepID=B5LW25_WHEAT Length = 246 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 77/233 (33%), Gaps = 39/233 (16%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 M+L +D + + TG +D LG GGL G++ EI G SSGKT + L A Sbjct: 1 MQLLKDAAEGKHFLPTGLEGIDTLLG-GGLRKGQLTEITGQSSSGKTQVCLYSAAHVAAR 59 Query: 88 GK-TCAFIDAEHALDPIYARKLGVDI-----------------DNLLCSQPDTGEQALEI 129 ++D ++ P + ++ +++C E+ Sbjct: 60 HMGAVLYLDTSNSFSPSRIAHILDELPISLIKEPKDMRLKRVMSSIICESVFDIFALFEV 119 Query: 130 CDALA---------RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 D L S + ++++DSV++L M M L Sbjct: 120 LDRLEVSLNCKVTNGSNKICLLIIDSVSSLLAPIIGGKNSQGRSM------MISVAMILK 173 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 233 + N ++ N + G G + K +RL I R Sbjct: 174 KLAHKHNLSVLVTNHMVAGNGAP-----KPALGESWKAAPHIRLMISRDRGSN 221 >UniRef50_D2L7W6 DNA repair protein RadA n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7W6_9DELT Length = 447 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 59/315 (18%), Positives = 101/315 (32%), Gaps = 44/315 (13%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 G + LG + D T LD LG GGL G V + G GK+TL LQ+ Sbjct: 52 SGVPVPLGSHPNEDFRPFPTAFSGLDRVLG-GGLTPGGAVLLGGEPGIGKSTLLLQLAGL 110 Query: 84 AQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 141 A G+ ++ AE +L + A +LGV + LL + A D L + A D+ Sbjct: 111 AAVAGRRVVYLSAEESLPQLKARAERLGVLHEGLL---AASTTDAGAAVDVLGATPAPDL 167 Query: 142 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 201 ++VDSV + S + K+ L+ + + K G Sbjct: 168 VIVDSVQTMHMAGIEGAAGSVSQ-------VRSVAAACVEAAKRGQACLVLVGHV-TKEG 219 Query: 202 VMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEF 261 + G + + + R + RI ++V+KN+ + Sbjct: 220 QIAGPKLLEHMVDTVLYLEGERRHLFRI---------------LRVLKNRYGPTDELLVM 264 Query: 262 QILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIE 321 ++ I + + + ++ A E + Sbjct: 265 EMREAGLIEVPDP---------------STFFLGDRDPAVSGSAVVMAVEGRRPFAVEAQ 309 Query: 322 KKVRELLLSNPNSTP 336 + LS P Sbjct: 310 ALAAKSFLSVPRRAA 324 >UniRef50_B8DKJ9 DNA repair protein radA n=11 Tax=Desulfovibrionales RepID=B8DKJ9_DESVM Length = 492 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 55/321 (17%), Positives = 106/321 (33%), Gaps = 45/321 (14%) Query: 23 GKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 82 + L + E +G +LD LG G +P G + + G GK+TL LQV Sbjct: 54 AQSRAQPLKDVADHGAEPFGSGLDALDRVLGKGLVP-GAAILVGGEPGIGKSTLLLQVAG 112 Query: 83 AAQREGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 140 A G+ ++ E +L + A +LGV D L+ + ++ L A Sbjct: 113 AVAAAGRGVLYLSGEESLPQLKARAARLGVLHDELMAVATTRLD---DVLPHLEGPEAPA 169 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 +++VDSV ++ S + + + +A K+S T ++ + + K Sbjct: 170 LLIVDSVQTVSSDRAEGLPGNVSQVRAVSTEIVEA-------CKRSGTTVLLVGHV-TKD 221 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAE 260 G + G + + R + R+ ++V+KN+ + Sbjct: 222 GALAGPRLLEHLVDTVISIEGDRRQMFRL---------------LRVLKNRFGPNQELLV 266 Query: 261 FQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI 320 F+++ + + + A E+ Sbjct: 267 FRMVEQGMEVVEDP---------------STFFLGARDPALSGTALVMAVDGQRPLAVEV 311 Query: 321 EKKVRELLLSNPNSTPDFSVD 341 + V L+ P T D Sbjct: 312 QALVTRSYLAIPRRT-GLGFD 331 >UniRef50_C9SL37 DNA repair protein RAD57 n=4 Tax=Sordariomyceta RepID=C9SL37_VERA1 Length = 459 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 26/224 (11%) Query: 21 QFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV 80 + R E+ + IST LD ALG GG+P G + EI G GKT L + Sbjct: 74 AASPSPLKRTLEELTNRPLVISTLDDDLDRALG-GGIPTGYVTEIAGESGVGKTQFLLSL 132 Query: 81 IAAAQRE-----GKTCAFIDAEHALDPIYARKL--------GVD------IDNLL---CS 118 + A Q G+ +I E L R++ G+ D ++ + Sbjct: 133 MLAVQLPSPHGLGRRALYISTEAPLSTTRLRQILASNPLLSGLSEEERPTTDAIIVGSVA 192 Query: 119 QPDTGEQALE-ICDALARSGAVDVIVVDSVAALTPKAEIEGEIG--DSHMGLAARMMSQA 175 ++ E L + ++V+DSVAA G S+MG + + + Sbjct: 193 DLESQEHILRFQVPVEVERSNIGLLVLDSVAANYRAEFERGVTKNHGSNMGARSNELIRL 252 Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 219 L ++ N ++ NQ+ + + + Sbjct: 253 GALLRDLAQKYNLAVVVANQVGDRFSSPLVPRSSRMAPPRSSYL 296 >UniRef50_C2BUU2 DNA repair protein radA n=3 Tax=Mobiluncus RepID=C2BUU2_9ACTO Length = 505 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 96/295 (32%), Gaps = 62/295 (21%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-- 86 +G + + TG D L GG+ G ++ + G GK+TL L+V A + Sbjct: 67 PIGHYSTERAVRLPTGVGEFDRVLS-GGIVPGAVILLAGEPGIGKSTLLLEVAARIAQGT 125 Query: 87 -----------------------------EGKTCAFIDAEHALDP--IYARKLGVDIDNL 115 EGKT ++ E + A+++G +NL Sbjct: 126 APRSPRVSENSPGLRLVSADSETPATVDTEGKTVLYLTGEETAEAVLSRAKRIGGVAENL 185 Query: 116 LCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 + E + A + + DV +VDS+ LT G + + + Sbjct: 186 YLA----AETQVSQALAQIETTSPDVTIVDSIQTLTDPTMDTSIGGPAQ-------VREV 234 Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 +L K + LI + + K G + G + + + R Sbjct: 235 TARLIDAAKSRHMALILVGHV-TKDGAVAGPRTLEHLVDVVCQFEGER------------ 281 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGA 290 G ++ VKN+ FQ++ GI + L + + GA Sbjct: 282 ---TGELRLLRAVKNRYGPTDAVGFFQMVES-GIEGIEDPSGLFLSKTAEPVPGA 332 >UniRef50_C5KD76 Meiotic recombination protein DMC1, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KD76_9ALVE Length = 259 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 88/234 (37%), Gaps = 27/234 (11%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 M + + + +STG SLD L GGLP+ ++VE+YGP SGKT + + + A Sbjct: 1 MSARDYGHLQRQYVSTGMPSLDAFL-RGGLPVAQLVELYGPAGSGKTQVLMSIAVAVLAG 59 Query: 88 GKTCAFIDAEHALDPIYARKL-----------GVDIDNLLCSQPDTGEQALEICDAL--- 133 + D+E L P + L G+ + + + D + +AL Sbjct: 60 EGRVFWFDSERTLHPERFQSLCERRSPHAPIEGM-LSRMAIKECDDLLDLIRGVEALKTI 118 Query: 134 -ARSGAVDVIVVDSVAALTPKAE---------IEGEIGDSHM-GLAARMMSQAMRKLAGN 182 G ++V+DSVAA E + E D+ + ++++ L G Sbjct: 119 PTCEGVPCLVVIDSVAAAARCTEDIILSRMQGDKSEGSDAAVLAERQSLLNRLAVALKGA 178 Query: 183 LKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGE 236 ++ N + + G +VRL I R+ + E Sbjct: 179 AWVQRAAVVVSNHVTADFDSNQSDAFKPALGLTWSHAVNVRLMINRVEESSQRE 232 >UniRef50_UPI0001C1683A DNA repair protein RadA n=2 Tax=Nostocaceae RepID=UPI0001C1683A Length = 522 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 50/366 (13%), Positives = 101/366 (27%), Gaps = 93/366 (25%) Query: 19 EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 78 K + + + + +G LD LG GG+ G +V I G GK+TL L Sbjct: 56 TKPSKPRASLTFDQISDRQIARWESGYSELDRVLG-GGVVPGSMVLIGGDPGIGKSTLLL 114 Query: 79 QVIAAAQREGKTCAFIDAEHALDP--IYARKLGVD------------------------- 111 QV + ++ E + + A +LG+ Sbjct: 115 QVSNELSQR-YRILYVTGEESGQQVKLRASRLGMSKPLQVVSMEDSNTSSESSHPLPETD 173 Query: 112 ----------------------IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 149 +L E+ L D+L ++ V+DS+ Sbjct: 174 PGNNVGDAVEDNHRVTVEHHTISSDLYVLPETDLEEILREIDSL----KPNLAVIDSIQT 229 Query: 150 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET 209 + A + + L K + ++ + + K G + G Sbjct: 230 VFFPALTSAPGSVAQVRECTAA-------LMKVAKHEDITMLIVGHV-TKEGTIAGPRVL 281 Query: 210 TTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 269 + + ++ R R+ ++ VKN+ A + F+++ G+ Sbjct: 282 EHLVDTVLYFEGDRFASHRL---------------LRTVKNRFGATHEIGIFEMV-SNGL 325 Query: 270 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL 329 +L + + G + E++ V Sbjct: 326 REVPNPSELFLGNRDEPSPGT--------------AIVVACEGTRPIVVELQALVSPTSY 371 Query: 330 SNPNST 335 +P Sbjct: 372 PSPRRA 377 >UniRef50_Q3AH17 DNA repair protein radA n=6 Tax=Chroococcales RepID=Q3AH17_SYNSC Length = 465 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 93/265 (35%), Gaps = 32/265 (12%) Query: 19 EKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 78 E + ++ ++TGS D LG GGL G +V + G GK+TL L Sbjct: 53 EVAAAPRRSTAMASLEDQPLQRLATGSAEFDRVLG-GGLVPGSLVLVGGDPGIGKSTLLL 111 Query: 79 QVIAAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALARS 136 Q +A + ++ AE + + ++L L E LE+ + Sbjct: 112 QSASAMAAG-ASVLYVSAEESAQQVKLRWQRLAGGASELQLL----AETDLELVLEELEA 166 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 V ++DS+ AL + A L K+ N L+ + + Sbjct: 167 LRPAVAIIDSIQALHDANLTSAPGSVGQVRECAAA-------LQRLAKRQNISLLLVGHV 219 Query: 197 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPF 256 K G++ G +A+ + R R+ ++ VKN+ A Sbjct: 220 -TKEGMLAGPKVLEHLVDAVLTFEGDRFASHRL---------------LRAVKNRFGATH 263 Query: 257 KQAEFQILYGEGINFYGELVDLGVK 281 + F++ G G+ G +L + Sbjct: 264 ELGLFEMQSG-GLAEVGNPSELFLS 287 >UniRef50_B0WMV3 DNA-repair protein XRCC3 n=2 Tax=Culicini RepID=B0WMV3_CULQU Length = 281 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 90/263 (34%), Gaps = 54/263 (20%) Query: 45 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALD 101 SLD L AGG+ +VEI G SGKT L L + Q++ + +I EH Sbjct: 34 VASLDRLLCAGGISARGVVEIAGDAGSGKTQLALHLALTCQQQCPERRGVVYISTEHPFP 93 Query: 102 PIYARKL------------------------------GVDI---DNLLCSQPDTGEQALE 128 ++ G+D+ +++L + + + Sbjct: 94 SKRLVQMEQTLRNSSGVGHEVGKYSDNIFVEHLNNPVGLDLIYFEDVLINNSALEQCITD 153 Query: 129 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 188 L + + ++V+DS+AA+ E A + + L ++ + Sbjct: 154 RLPVLLENNPIRLLVIDSIAAVYADEE--------DYVERAESFRRLVHSLHALQERFDF 205 Query: 189 LLIFINQIRMKIGVMFG-NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 + + NQ+R + G G A R+ +RRI +G+ RV Sbjct: 206 VTVCTNQVRAVVDDYDGEEKVIPALGLAWGSLVHTRIQLRRI---------MGTNRRVCQ 256 Query: 248 VKNKIAAPFKQAEFQILYGEGIN 270 + A + F I ++ Sbjct: 257 LLFCPTAEPAECYFVIAQAGILD 279 >UniRef50_UPI00019A9ED6 RAD51 homolog C n=1 Tax=Nasonia vitripennis RepID=UPI00019A9ED6 Length = 314 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 108/298 (36%), Gaps = 47/298 (15%) Query: 3 IDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDV-ETISTGSLSLDIALGAGGLPMGR 61 ++ + K + IEKQ + L + E IS L+ ALG GG+ Sbjct: 32 LNSKQLKNFNLSRSDIEKQLQPSQELGLDIWQRETQQEHISLCCSELEAALG-GGIQCRV 90 Query: 62 IVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYA---------- 105 I E+ G SGKT + +Q+ + Q +ID Sbjct: 91 ITELSGVPFSGKTQICMQLCISVQLNKCYGGLDGRAIYIDTRSGTCASRFKDIVRGLNKS 150 Query: 106 -RKLGVDIDNLL----CSQPDTGEQALEICDAL-------ARSGAVDVIVVDSVAALTPK 153 + L ++ D +L P++ E+ ++I D+L V +I+VDS+ ++ Sbjct: 151 HKDLNLNADEVLKCIEILSPNSVEEFVQIIDSLKFKMKSNKDEKKVRLIIVDSL-SMPIL 209 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 213 I+ + S + KL + ++ N++ M++ + GG Sbjct: 210 CCIDDPTKRPYYY------SHILHKLHKLALINELAVVITNELVMQVDKDGKSYFAAAGG 263 Query: 214 NALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINF 271 + YASV+L++ R+ + ++K+ I F I NF Sbjct: 264 QYVADYASVKLEMTRL---------TDHKFATCLLKSPIMPEIS-VTFMITEDGIRNF 311 >UniRef50_B4DMW6 cDNA FLJ56732, highly similar to Meiotic recombination protein DMC1/LIM15homolog n=5 Tax=Eukaryota RepID=B4DMW6_HUMAN Length = 285 Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 68/278 (24%) Query: 2 AIDENK-QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E K K AA IE F ++ V I+TGS D LG GG+ Sbjct: 64 GLSEAKVDKIKEAANKLIEPGFLTAFEYS---EKRKMVFHITTGSQEFDKLLG-GGIESM 119 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 120 I E +G +GKT L+ + Sbjct: 120 AITEAFGEFRTGKTQLSHTLC--------------------------------------- 140 Query: 121 DTGEQALEICDALA-----RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQA 175 GE +E+ D +A +G ++++DS+ AL G + + ++Q Sbjct: 141 --GEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV----DFSGRGELAERQQKLAQM 194 Query: 176 MRKLAGNLKQSNTLLIFINQIRMKIG---VMFGNPETTTGGNALKFYASVRLDIRRIGAV 232 + +L ++ N + NQ+ G +P+ GG+ L ++ R+ +R+ Sbjct: 195 LSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGR-- 252 Query: 233 KEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270 E R+ + + P +A F I G + Sbjct: 253 --------GELRIAKIYDSPEMPENEATFAITAGGIGD 282 >UniRef50_A5LPZ1 Recombinase A n=1 Tax=Streptococcus pneumoniae SP6-BS73 RepID=A5LPZ1_STRPN Length = 174 Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 76/155 (49%), Positives = 101/155 (65%), Gaps = 5/155 (3%) Query: 203 MFGNPETTTGGNALKFYASVRLDIRRIGAVK----EGENVVGSETRVKVVKNKIAAPFKQ 258 MFGNPETT GG ALKFYASVRLD+R +K + E VG ET++KVVKNK+A PFK+ Sbjct: 1 MFGNPETTPGGRALKFYASVRLDVRGNTQIKGTGDQKETNVGKETKIKVVKNKVAPPFKE 60 Query: 259 AEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAK 318 A +I+YGEGI+ GEL+ + +I+KAGAWYSYK EKIGQG NA +L ++PE Sbjct: 61 AVVEIMYGEGISKTGELLKIASDLDIIKKAGAWYSYKDEKIGQGSENAKKYLAEHPEIFD 120 Query: 319 EIEKKVRELL-LSNPNSTPDFSVDDSEGVAETNED 352 EI+K+VR L + + ++ + + E Sbjct: 121 EIDKQVRSKFGLIDGEEVSEQDTENKKDEPKKEEA 155 >UniRef50_Q97B99 DNA repair and recombination protein radB n=3 Tax=Thermoplasma RepID=RADB_THEVO Length = 234 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 76/236 (32%), Gaps = 23/236 (9%) Query: 35 SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 94 +E + G +D L GGL G I EI+G SGK+ + + +A R GK FI Sbjct: 8 QEKIEKLPLGVACIDG-LTNGGLEAGIITEIFGEGGSGKSNVCMLAACSALRLGKKVVFI 66 Query: 95 DAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA----LARSGAVDVIVVDSVAAL 150 D+E + D L + + + + + + + ++DS + Sbjct: 67 DSEGFSSERFLSICKADNSKLKVIRVFSLDDQEVAITKFSKIIEKDASYGLFILDSFSEF 126 Query: 151 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 210 + + L+ + ++ NQI I Sbjct: 127 FRLERTGDNQS------RVIDFQRQLSLLSSIAAKRKIPVLITNQIYQDIANG---DILP 177 Query: 211 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 GG + + R+ ++ V+K++ EF+I+ Sbjct: 178 FGGYVVDHIMKAIYRLERL---------PDGRRKMTVMKHRSVKEGNSVEFRIVQD 224 >UniRef50_Q76B91 Os06g0151600 protein n=6 Tax=Magnoliophyta RepID=Q76B91_ORYSJ Length = 619 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 83/238 (34%), Gaps = 36/238 (15%) Query: 50 IALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA-----AAQREGKTCAFIDAEHALDPI- 103 LG GG+ G ++ + G GK++L LQ+ + E ++ E +++ I Sbjct: 234 RVLG-GGVVPGSLILVGGDPGVGKSSLILQLASIMSENIGAGESSAIVYVSGEESIEQIG 292 Query: 104 -YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGD 162 A ++ + NL E L+ L + +++DS+ + + Sbjct: 293 NRADRMSIKSRNLYLYSSTDIEDILDKIQPL----SPRALIIDSIQTVYLRGFAGSAGNM 348 Query: 163 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 222 + + L K +N +I I + K G + G + + + Sbjct: 349 TQVKECTSA-------LLRFAKLTNIPVILIGHV-TKTGDIAGPRLLEHIVDVVLYMEGE 400 Query: 223 RLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGV 280 R R+ ++ VKN+ + + F++ G G+ ++ + Sbjct: 401 RCLSHRL---------------LRSVKNRFGSTDELGVFEMS-GYGLQPVLNPTEMFL 442 >UniRef50_Q54PJ7 DNA repair protein RAD51 homolog 3 n=1 Tax=Dictyostelium discoideum RepID=RA51C_DICDI Length = 381 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 45/238 (18%) Query: 26 SIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 85 S + L I T +D L GG P+ +I EI G GKT + Q++ Sbjct: 49 SALDLLIQGRDGNNNIITFCSEIDQMLN-GGTPLKKITEICGVPGIGKTNMAFQLLVNTS 107 Query: 86 RE------GKTCAFIDAEHALDPIYARKLGVDIDN------------------------- 114 +ID E + R++ + N Sbjct: 108 IPFDLGGVQGKAIYIDTEGSYSCQRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLN 167 Query: 115 -LLCSQPDTGEQALEICDALA----RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAA 169 + + + + + L ++ V +IVVDS+ MGL Sbjct: 168 SIYYYRVYHYIEIISLIHQLPLFLEKNKDVKLIVVDSITYPFRCDF-------KDMGLRT 220 Query: 170 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPE-TTTGGNALKFYASVRLDI 226 R + + L + N ++ +NQ+ KI G + + R+ + Sbjct: 221 RSLLSLAQNLMNIATRYNLAVVVMNQVTTKISPNQKESILVPYLGESWTHICTYRMVL 278 >UniRef50_Q9LQQ2 DNA repair protein RAD51 homolog 4 n=5 Tax=Embryophyta RepID=RA51D_ARATH Length = 322 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 37/253 (14%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 ++L ED + T+STG D L GG G++ E+ GP SSGKT +Q A+ Sbjct: 76 LKLLEDLHRNKHTLSTGDKETDSLL-QGGFREGQLTELVGPSSSGKTQFCMQAAASVAEN 134 Query: 88 G-KTCAFIDAEHALDPIYARK---------LGVD-IDNLLCSQPDTGEQALEICDAL--- 133 ++D ++ + LG + +LC + L Sbjct: 135 HLGRVLYLDTGNSFSARRIAQFICSSSDATLGQKVMSRILCHTVYDIYTLFDTLQDLEIT 194 Query: 134 ------ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 187 + ++VVDS+++L +M L + + Sbjct: 195 LRLQMNVNESRLRLLVVDSISSLITPILGGSGSQGR------ALMVAIGYLLKKLAHEHS 248 Query: 188 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 ++ N G G G K VRL + R + S + + Sbjct: 249 IAILVTNHTVGAGGE--GGKTKPALGETWKSIPHVRLSLSR--------DHKNSNCTISI 298 Query: 248 VKNKIAAPFKQAE 260 +K+ + A+ Sbjct: 299 LKHTSLPSGQAAK 311 >UniRef50_A9BF42 Methylated-DNA--(Protein)-cysteine S-methyltransferase n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF42_PETMO Length = 423 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 85/266 (31%), Gaps = 29/266 (10%) Query: 18 IEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 77 I+ K + + + I T +D L GGL G + + G GK+TL Sbjct: 18 IDTGNIKVPDIVFLDQELPPAKKIPTNFQEIDNVLN-GGLVEGAVYLLSGDPGIGKSTLL 76 Query: 78 LQVIAAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLLCSQPDTGEQALEICDALAR 135 Q+ + Q ++ E + + +L + N+ + + L + Sbjct: 77 AQIAKSIQTAEGYIFYVSGEESTEQVVQRFNRLEIKNKNIGLIFENNVDVILNALEK--S 134 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 + VI +DSV L + + + R M K+ N ++ + Sbjct: 135 NMKSSVIFIDSVQTLKIDSIDSSPGSILQVRESTRKM-------VEYAKKKNIPVVLVGH 187 Query: 196 IRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAP 255 + K G + G + + E E G +KV KN+ Sbjct: 188 V-NKEGAIAGPKVLEHMVDCVLQM--------------ELEGGSGLRL-LKVTKNRYGPT 231 Query: 256 FKQAEFQILYGEGINFYGELVDLGVK 281 + F+I +G+ + + Sbjct: 232 DEVVLFEITQ-KGLKPIDNINSFFLS 256 >UniRef50_B7GAG1 Rad51 DNA recombination/repair protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAG1_PHATR Length = 456 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 97/303 (32%), Gaps = 77/303 (25%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 91 E+ + + TG LD AL GG+ +G I E+ GP GKT L +Q+ A R + C Sbjct: 151 EETFSRMRYLPTGLEPLDQAL-RGGVRVGTITELVGPAGVGKTQLAMQLCIMASRYAQGC 209 Query: 92 AFIDAEHALDPIYARKLGVD---------------------------------------- 111 ++D E L R++ + Sbjct: 210 VYVDTEKKLSVARLREIALQRSSRVPDTNTHGEFLYPSDTTLVESTVDISATSRNCFRSP 269 Query: 112 ---IDNLLCSQPDTGEQALEICDALARS---------------GAVDVIVVDSVAALTPK 153 +DN+ P ++ + V ++V+DS+AA + Sbjct: 270 QEVLDNVTVHSPSNIDELFGALSEVEDELFSRNHQSVGSSNAKFPVRLLVLDSIAAPARR 329 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG----NPET 209 + G A + + + L Q + +++ INQ+ I Sbjct: 330 -----DFGAGSAPELASTVIKIAQTLKRLADQHHLVVVVINQVGSSILGTDAVIDQTGIR 384 Query: 210 TTGGNALKFYASVRLDIRRIGAVKEGENVVGSE---------TRVKVVKNKIAAPFKQAE 260 G + S R+ + ++ S+ ++ V+K+ + P K Sbjct: 385 PALGTSWHHCVSTRVLFEFEADLVSSSSLSNSDGPLRGRAPSRQLSVIKSNLTGPGKPIV 444 Query: 261 FQI 263 F + Sbjct: 445 FDL 447 >UniRef50_B6QPB3 Putative uncharacterized protein n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QPB3_PENMQ Length = 442 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 81/290 (27%), Gaps = 65/290 (22%) Query: 23 GKGSIMRLGEDRSMDVETISTGSLSLDIAL--GAG----GLPMGRIVEIYGPESSGKTTL 76 + + ++ TG LD AL G G+P G I EIYGP GKT Sbjct: 27 ASSTQFPSTSAAASAARSLPTGLDGLDDALCVTTGLLSSGIPRGSITEIYGPPGVGKTAF 86 Query: 77 TLQVIAAAQREGK--TCAFIDAEHALDPIYARKLGVD----------------------- 111 +L + A G +ID + R L + Sbjct: 87 SLNIAAKVLTAGDDEKVIWIDTGSPIPKPRLRDLLISNIKSSTTTTTTTTEVDITNKLND 146 Query: 112 -IDNLLCSQPDTGEQALEICDALARSGAVD---VIVVDSVAALTPKAEIEGEIGDSHMGL 167 I ++ + + L + + +IV+D+V+A S +GL Sbjct: 147 CITRVIHIRAHSLPHLLSLFTHPPPNFPPKGTSLIVIDTVSAPFQSYFPNATELKSRLGL 206 Query: 168 AARMMSQ-----------------------------AMRKLAGNLKQSNTLLIFINQIRM 198 + Q + K+ N +I +NQ Sbjct: 207 RQQHPQQDPGSGPGPLQAQAHQLQWLLNRKWNVTSDMINKITKFAATHNLAVIVLNQTHT 266 Query: 199 KIGVMFGNPETTTGG-NALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 KI + + R+ + R + G +KV Sbjct: 267 KIKGQPRPTLYPALAGGSWETCVQTRIVLYRDHPPSHLDTGHGGGRGMKV 316 >UniRef50_A4FYL0 DNA repair and recombination protein radB n=10 Tax=Methanococcales RepID=RADB_METM5 Length = 216 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 92/222 (41%), Gaps = 23/222 (10%) Query: 50 IALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG 109 L G + I +IYGP GKT + + + A GK +ID E +L ++L Sbjct: 3 EELLNGNIEKKTITQIYGPPGVGKTNICILSMLKAIENGKNVVYIDTEGSLSIERIKQLS 62 Query: 110 VD-----IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 164 + +++ +P + E+ E + + + +IV+D + +L + ++ Sbjct: 63 EQDSDELLKSIIIYEPSSFEEQSEALEKIFFLENIGLIVIDGIVSLYRLELCDNINENTK 122 Query: 165 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRL 224 + RM+ + + L + N+ ++ NQ++ I GG L++++ + Sbjct: 123 L---NRMLGKQISNLLKVARMKNSGILITNQVKDSING-----IEPAGGRLLEYWSKSII 174 Query: 225 DIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 + + ++ ++ + K++ A + F+I+ Sbjct: 175 KLEKTESI----------RKLTLEKHRHAKEGENLRFRIVQN 206 >UniRef50_D1ZTD1 Putative RAD55 protein n=1 Tax=Sordaria macrospora RepID=D1ZTD1_SORMA Length = 441 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 90/285 (31%), Gaps = 44/285 (15%) Query: 37 DVETISTGSLSLDIALG--------AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 + ISTG +LD AL GG+ +++EI+GP GKT +Q+ EG Sbjct: 40 NSPFISTGLDALDAALKPSLDIDIVTGGVQKAQVIEIWGPPGVGKTAFGVQLATNCLGEG 99 Query: 89 KTCAFIDAEHALDPIYARKLGVD------------------IDNLLCSQPDTGEQALEIC 130 K ++D H + R + +D L + + + Sbjct: 100 KGVVWVDGFHRVPIERLRSVLGSKVKRDKQGEQEDATVDERLDALTHYTCPSLPHLIALL 159 Query: 131 DALARS---GAVDVIVVDSVAALTPKAEIEGEIGDSHM-----------GLAARMMSQAM 176 S +IVVDS++AL A + +++ + Sbjct: 160 CRPTPSCVPQNTSLIVVDSLSALVNHAFPRTPEQKKVVDSKGNKVPSLSTRRLQVLQYII 219 Query: 177 RKLAGNLKQSNTLLIFINQIRMK-IGVMFGNPETTTGGNA-LKFYASVRLDIRRIGAVKE 234 L + ++ + Q K + G + + S +L + R A + Sbjct: 220 GALQKLAATRDVAIVVLTQCATKMMQAERGATLVPAINASVWEQGISTKLVLYRNLAFSD 279 Query: 235 GENVVGSETRVKVVKNKI--AAPFKQAEFQILYGEGINFYGELVD 277 + ++ + K A F I G + + + Sbjct: 280 AKVQGLRLVGLQKLNGKTSEAPVDTICAFDIEEGGLVIVEYDFSE 324 >UniRef50_Q9SK02 DNA repair protein RAD51 homolog 2 n=7 Tax=Magnoliophyta RepID=RA51B_ARATH Length = 370 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 54/332 (16%), Positives = 101/332 (30%), Gaps = 72/332 (21%) Query: 1 MAIDENKQKALAAALGQIEKQFGK--GSIMRLGEDRSMDVE---TISTGSLSLDIALGAG 55 M + + K + +A+ I + S L E + + + T LD L G Sbjct: 39 MELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTL-CG 97 Query: 56 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPIYARKLG 109 G+P G + E+ GP GK+ +++ +A +ID E ++G Sbjct: 98 GIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMG 157 Query: 110 VDI---------------DNLLCSQPDTGEQALEICDAL---ARSGAVDVIVVDSVAALT 151 ++ +L +P + E L V ++V+DS+ AL Sbjct: 158 LESFPEVFHLKGMAQEMAGRILVLRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALL 217 Query: 152 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM-------- 203 G + + L + S ++ NQ+R + Sbjct: 218 SGENKPG-------AQRQPQLGWHISFLKSLAEFSRIPIVVTNQVRSQNRDETSQYSFQA 270 Query: 204 ------------FGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNK 251 + + G ++RL + + +KV K+ Sbjct: 271 KVKDEFKDNTKTYDSHLVAALGINWAHAVTIRLVLEAKS----------GQRIIKVAKSP 320 Query: 252 IAAPFKQAEFQILYGEGINFYGELVDLGVKEK 283 ++ P F I L D G + K Sbjct: 321 MSPPLA-FPFHITSAG----ISLLSDNGTELK 347 >UniRef50_Q13X95 DNA repair protein radA n=11 Tax=Proteobacteria RepID=Q13X95_BURXL Length = 458 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 84/246 (34%), Gaps = 38/246 (15%) Query: 29 RLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG 88 RL + + DV +TG D LG G L G +V I G GK+TL LQ +A Sbjct: 57 RLADIEASDVPRFTTGVSEFDRVLGGG-LVPGGVVLIGGDPGIGKSTLLLQSLAEIAA-D 114 Query: 89 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT--------GEQALEICDALARSGAVD 140 K +I E + I R L +P + E LE A D Sbjct: 115 KRALYISGEESAAQIALRA-----QRLSLLEPGSRASELQLLAEIQLEKIQATIAEQRPD 169 Query: 141 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 200 V V+DS+ + A + + A L KQS T +I + + K Sbjct: 170 VAVIDSIQTVYSDALTSAPGSVAQVRECAAQ-------LTRIAKQSGTTIIMVGHV-TKE 221 Query: 201 GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAE 260 G + G + + ++ R+ V+ +KN+ A + Sbjct: 222 GALAGPRVLEHIVDTVLYFEGDTHSSYRL---------------VRAIKNRFGAVNELGV 266 Query: 261 FQILYG 266 F + Sbjct: 267 FAMTER 272 >UniRef50_UPI00005234FA PREDICTED: similar to RAD51-like 3 (S. cerevisiae) n=1 Tax=Ciona intestinalis RepID=UPI00005234FA Length = 328 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 70/220 (31%), Gaps = 27/220 (12%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 + L + + + TG SLD L G+ G + EI GP SSGKT L Sbjct: 69 LDLFHETMGTLAVLPTGCESLDDLL-DAGIYTGEVTEIVGPSSSGKTQLCETFAVNVAAS 127 Query: 88 -GKTCAFIDAEHALDPIYARKL----------GVDIDNLLCSQPDTGEQALEICDALARS 136 + +ID + ++ + + S+ + E D + R Sbjct: 128 FDQNVIYIDTAGGFSAVRVGEIFKKRFSSHNTSATLSRIRVSRCFEVSELRETLDLVRRK 187 Query: 137 GAV---------DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 187 + V+++DSV +L G + + R+L K Sbjct: 188 MSAQDETFFSSLKVVIIDSVTSLLSTVLYNGTFVEGM-----ASLQSIGRQLNALAKDFA 242 Query: 188 TLLIFINQIRMKIGVMFGN-PETTTGGNALKFYASVRLDI 226 ++ N + G G F SVR+ + Sbjct: 243 LAVVITNDMVTGPQDKTGQFSRKPALGRVWTFVPSVRVQL 282 >UniRef50_A9A126 RecA/RadA recombinase-like protein n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A126_NITMS Length = 217 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 22/226 (9%) Query: 41 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 100 ISTG LD +L GG+P G IV+I+G +GKT L LQ+ + ++G + D Sbjct: 2 ISTGLEKLDKSL-FGGIPNGVIVDIFGKNGTGKTQLLLQLAINSIKKGGHVLYFDTTGGF 60 Query: 101 DPIYARKLGVD-------IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 153 P + + ++ + S+ + + + R +IV+D++ L Sbjct: 61 RPERILDIQKESESQSDFLNQITVSRLTNTSEQINSIKNIER--NFSLIVIDNITDLFSY 118 Query: 154 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 213 + E + + + M LA + ++ N IR G E Sbjct: 119 EYQKDE----SIFEKNSLFMKYMHDLANFAISNRIPIVVTNMIRNLEG-----KEIENMK 169 Query: 214 NALKFYASVRLDIRRIGAVKEGE---NVVGSETRVKVVKNKIAAPF 256 +A+ + +++ + + + +G+ + + + K ++ Sbjct: 170 SAIDPFTHIKIHLTKNSSKFDGKIYSPFIENSFSYTIDKLGLSPSE 215 >UniRef50_O43502 DNA repair protein RAD51 homolog 3 n=37 Tax=Euteleostomi RepID=RA51C_HUMAN Length = 376 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 48/233 (20%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT------CAF 93 I T +LD LG GG+P+ + EI G GKT L +Q+ Q F Sbjct: 99 FIITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVF 157 Query: 94 IDAEHALDPIY---------------------------ARKLGVD--IDNLLCSQPDTGE 124 ID E + +D + ++ + Sbjct: 158 IDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYT 217 Query: 125 QALEIC----DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 180 + L D L+ V +++VD +A + + L R+++ +++ Sbjct: 218 ELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD-------LSLRTRLLNGLAQQMI 270 Query: 181 GNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVK 233 +I NQ+ KI G + A++RL + Sbjct: 271 SLANNHRLAVILTNQMTTKIDRNQAL-LVPALGESWGHAATIRLIFHWDRKQR 322 >UniRef50_UPI0001758334 PREDICTED: similar to GA17378-PA n=1 Tax=Tribolium castaneum RepID=UPI0001758334 Length = 272 Score = 111 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 79/220 (35%), Gaps = 31/220 (14%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCA 92 ISTG ++D A+ GG+ + RI EI G GKT L LQ+ AQ GK+ Sbjct: 35 HRISTGCSAID-AITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLGKSVV 93 Query: 93 FIDAEHALDPIYAR-----------KLGVDI-DNLLCSQPDTGEQAL----EICDALARS 136 ++ E A + LG++ DN+ EQ L Sbjct: 94 YLCTEDAFPIKRLKDLAITYSLKYHDLGINFEDNIFIEHLADVEQLKKCLSNSLTKLLLV 153 Query: 137 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 196 V ++V+DS+A + E D + + + L K+ ++ +NQ+ Sbjct: 154 KNVGLVVIDSIAGIFR-----SETLDVNYKNRNQDFILIVTLLNKLAKKYGFAVVCVNQV 208 Query: 197 RMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGE 236 N G A + R +I R K E Sbjct: 209 TDNP---TTNVTEPCLGLAWSNCLTYRFNINRFVNTKVRE 245 >UniRef50_Q6L2I8 DNA repair and recombination protein RadB n=1 Tax=Picrophilus torridus RepID=Q6L2I8_PICTO Length = 228 Score = 111 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 27/234 (11%) Query: 39 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98 E + + +D + GGL G I EIYG SGKT +++ + GK +ID E Sbjct: 11 EKLPSNVKCIDELMN-GGLEPGIITEIYGQGGSGKTNISMIFARSVLLSGKRVIYIDTEG 69 Query: 99 ALDPIYARKLGVDID---NLLCSQPDTGEQALEIC---DALARSGAVDVIVVDSVAALTP 152 ++ D N++ + + + + L + ++++DS+ + Sbjct: 70 -FSTERFSQICPDKSLYKNMVLFRASSIDDQDLAIIRSEKLMKEKNYSLLILDSLTSFFR 128 Query: 153 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG 212 + + + L + N ++ NQI I P G Sbjct: 129 IEKGNDISSRMSGFE------KELGMLNNIAVRYNIPVLLTNQIYEDIDKKSLEPF---G 179 Query: 213 GNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYG 266 G + + +I ++ R+++VK++ F I Sbjct: 180 GFFIDHSMKAIYKLEKIN----------NKRRIEIVKHRSIKEGLYTTFIINDS 223 >UniRef50_B2ASB2 Predicted CDS Pa_1_22940 (Fragment) n=1 Tax=Podospora anserina RepID=B2ASB2_PODAN Length = 294 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 81/282 (28%), Gaps = 44/282 (15%) Query: 30 LGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 89 L + ISTG LD + G+ G + EI+GP GKT +Q+ A REG Sbjct: 12 LEDFEGTQNHHISTGLPVLDA---SNGIQKGSVTEIWGPPGVGKTAFGIQLTANCLREGG 68 Query: 90 TCAF--------------IDAEHALDPIYARKLGVD----------IDNLLCSQPDTGEQ 125 + D H + ++ VD +D + T Sbjct: 69 GVVWSGLGSLLWSGTYTDADGFHRMSIERLHQV-VDLNSEDGQIQPLDKFVHYSCPTLVH 127 Query: 126 ALEICDALARSGAV---DVIVVDSVAALTPKAEIEGEIGDS--------HMGLAARMMSQ 174 + + S +IVVDS++AL ++ + + Sbjct: 128 LIALLCRPTASCIPEWTSLIVVDSLSALVNHDVLKNTDLRQAPQTKHKDTRERRIQALHY 187 Query: 175 AMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNA-LKFYASVRLDIRRIGAVK 233 + L + ++ + Q K+ G + + R+ + R Sbjct: 188 ILSNLQKLAATRDVAIVILTQCATKMQAERGATLVPAINASVWRQGIVSRIALFRDRLQN 247 Query: 234 EGENVVGSETRVKVVKNKIAAPFKQAE----FQILYGEGINF 271 + E N + A F I + Sbjct: 248 DFETSTALRFAFIQKLNGVDKHADDAAALCGFHIEAVCFFDR 289 >UniRef50_C4ZBA6 Putative uncharacterized protein n=11 Tax=Clostridiales RepID=C4ZBA6_EUBR3 Length = 322 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 107/313 (34%), Gaps = 46/313 (14%) Query: 57 LPMGRIVEIYGPESSGKTTLTLQVIA-------------AAQREGKTCAFIDAEHALD-- 101 +P G++ + G GKTT L + A QRE + +AE +L+ Sbjct: 30 IPYGKLTIVQGDPGEGKTTFILHLAALLTKGEPLPNEEVDVQREPVNVIYQNAEDSLEDT 89 Query: 102 -PIYARKLGVDIDNLLCSQ--PDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEG 158 + G D + +L D E R ++V+D + A Sbjct: 90 IKPRLLEAGADCNRVLVIDESVDCLSMTDERLVRAIRETGAKMVVLDPIQAY-------- 141 Query: 159 EIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 218 +G A + +++L ++ +I I + G ++ F Sbjct: 142 -LGADVDMHRANEIRPVLKQLGNIAEEYGCAIILIGHMNKASSSKSTYR----GLGSIDF 196 Query: 219 YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDL 278 A+ R + + + K+ +A F++ +G + + D+ Sbjct: 197 QATARSVLVVGRIKDDTT-----LRVIAHDKSSLAPEGTSIAFRMDKEKGF-TWEGVYDI 250 Query: 279 GVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNP---NST 335 V+E L ++ +G+K K+ L + + EI + RE + N+ Sbjct: 251 TVEELLSGES------RGQKTKDAKSFLAEILAEGQMSCNEITEAARERGIKKKTLWNAK 304 Query: 336 PDFSVDDSEGVAE 348 + S+D + ++ Sbjct: 305 KEMSIDSVKVGSQ 317 >UniRef50_D1H4V0 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H4V0_VITVI Length = 1093 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 41/256 (16%) Query: 2 AIDENKQKALAAALGQIEKQFGK-GSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMG 60 + E ++ + L I+ Q + M L ED + + +STG +D+ L GGL +G Sbjct: 101 STSERLKQGITQILSIIDGQHQPWLNGMELLEDAQQNKQVLSTGCEGIDMLL-HGGLCVG 159 Query: 61 RIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYARKLGVD-------- 111 + E+ GP S+GKT + L+V + FID ++ P+ ++ Sbjct: 160 HLTELVGPSSAGKTQICLKVASGVATRYMGGVVFIDTGNSFSPLRIAHF-INQIPDTIFK 218 Query: 112 ----------IDNLLCSQPDTGEQALEICDALARS---------GAVDVIVVDSVAALTP 152 + +LC L++ L S V +++VDS+++L Sbjct: 219 EVKQNILEKVMSQILCHSVFDIFAMLDVVHQLEYSLRSQVQTGADQVRLLIVDSISSLIT 278 Query: 153 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG 212 +M A L + N ++ N + G + Sbjct: 279 PILGGSGSHGR------ALMISAGFLLKKLAHEHNLAVVVTNHMVGGEGGI----LKPAL 328 Query: 213 GNALKFYASVRLDIRR 228 G + K VRL + R Sbjct: 329 GESWKSIPHVRLLLSR 344 >UniRef50_Q2Y821 DNA repair protein radA n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y821_NITMU Length = 452 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 102/329 (31%), Gaps = 47/329 (14%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 A + + L E + + + STG L D LG GL G +V + G Sbjct: 39 EKAAARFTPVSESREVQSLSEVEAEEEQRYSTGLLEFDRVLGG-GLVQGGVVLLGGDPGI 97 Query: 72 GKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPDTGEQAL 127 GK+TL LQ + + ++ E + + A+++GVD L E L Sbjct: 98 GKSTLLLQALCNMSLLPLARNVLYVSGEESARQVAMRAKRMGVDAKALHLL----AEIRL 153 Query: 128 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 187 E + DV V+DS+ + A + + A L K S Sbjct: 154 ERIQEVLAERKPDVAVIDSIQTVYSDALQSAPGSVAQVRECAAQ-------LTRLAKASG 206 Query: 188 TLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKV 247 T +I + + K G + G + + ++ R+ ++ Sbjct: 207 TGMILVGHV-TKEGALAGPRVLEHMVDTVLYFEGDTHSSFRL---------------IRA 250 Query: 248 VKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANAT 307 KN+ A + F + +G+ L + + G+ E Sbjct: 251 FKNRFGAVNELGVFAMTE-KGLREVSNPSALFLSHHGGQVPGSCIMVTQE---------- 299 Query: 308 AWLKDNPETAKEIEKKVRELLLSNPNSTP 336 EI+ V E N Sbjct: 300 ----GTRPLLVEIQALVDEAHSPNARRLS 324 >UniRef50_Q9UUL2 DNA repair protein rhp57 n=1 Tax=Schizosaccharomyces pombe RepID=RAD57_SCHPO Length = 354 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 60/278 (21%) Query: 32 EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---- 87 + + ++TG + LD L GG+P+G++ EI G SGK+ +Q+ Q Sbjct: 66 SASKVTSKYLTTGDVKLDETL-HGGIPVGQLTEICGESGSGKSQFCMQLCLMVQLPLSLG 124 Query: 88 --GKTCAFIDAEHALDPIYARKL---------------------GVDIDNLLCSQPDTGE 124 K FI E L+ +L G + +LC ++ E Sbjct: 125 GMNKAAVFISTESGLETKRLFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDLESQE 184 Query: 125 QALE-ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGD-----SHMGLAARMMSQAMRK 178 ++ L + ++++DSVA+ ++ + + Sbjct: 185 HIIQYQLPILFNRDKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQLGKLAMT 244 Query: 179 LAGNLKQSNTLLIFINQIRMKI----------------------GVMFGNPETTTGGNAL 216 L Q ++ NQ+ +I NP+ + G Sbjct: 245 LRTLAHQHEAAVVIANQVSDRIPRDYDAIGLFSLDYQSQWFSGWDDTDPNPKIPSLGLVW 304 Query: 217 KFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAA 254 S RL + + K S +VV + + Sbjct: 305 TNNISTRLALIK----KTDSATNNSGRIFRVVYSPNSP 338 >UniRef50_Q0WVW9 DNA repair protein-like n=1 Tax=Arabidopsis thaliana RepID=Q0WVW9_ARATH Length = 587 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 35/221 (15%) Query: 50 IALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-----REGKTCAFIDAEHALDPI- 103 LG GGL G ++ I G GK+TL LQ+ + E +I E +++ I Sbjct: 203 RVLG-GGLAPGSLILIGGDPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQIG 261 Query: 104 -YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGD 162 A ++ + + L + L L + +++DS+ + K G Sbjct: 262 SRADRMRIQTEELYLFSSSDLQDILNKAHRL----SPRALIIDSIQTVYLKDVTGSAGGL 317 Query: 163 SHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV 222 + + L K+SN + + + K G + G + + + Sbjct: 318 TQVKECT-------STLLRFAKKSNIPVFLVGHV-TKAGDIAGPRVLEHIVDVVLYLEGE 369 Query: 223 RLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 R+ ++ VKN+ + + F++ Sbjct: 370 ESSTYRL---------------LRSVKNRFGSTDELGVFEM 395 >UniRef50_Q1IJA5 RecA/RadA recombinase-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJA5_ACIBL Length = 252 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 107/261 (40%), Gaps = 46/261 (17%) Query: 12 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 71 + QIE + + +TG +LD L GGLP+G + E++GPE S Sbjct: 5 SLLRSQIESALAPRVPVVFSTCAQVSRPVQTTGIAALDR-LTGGGLPVGAVCELFGPECS 63 Query: 72 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE------- 124 G+T++ L +A REG CA+ID +LDP A GVD+ LL + E Sbjct: 64 GRTSVALAFLAQITREGTACAWIDVADSLDPESAAACGVDLRRLLWVRCSDAETRRARGK 123 Query: 125 ------QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 178 QAL D + ++G +V D + A+ P+ + + + Sbjct: 124 MWSRLDQALRAADLVLQAGGFGAVVFD-MGAVPPEKALRVPLAS-------------WFR 169 Query: 179 LAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENV 238 +++ + ++Q+ K ++++L + R+ +EG V Sbjct: 170 FRAAAERTQATFLLLSQVS-----------------CAKSCSALQLKLDRLRTRQEGGQV 212 Query: 239 -VGSETRVKVVKNKIAAPFKQ 258 G + ++V+++ +A K Sbjct: 213 LSGLQFHAELVRDRFSAAKKP 233 >UniRef50_A9RTQ6 Predicted protein n=3 Tax=cellular organisms RepID=A9RTQ6_PHYPA Length = 610 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 33/250 (13%) Query: 43 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 102 TG + LG GGL G ++ + G GK+TL LQ Q G ++ E +++ Sbjct: 223 TG-QEIGRVLG-GGLVPGSLILVGGDPGVGKSTLLLQGTDE-QGPG-PVLYVSGEESVEQ 278 Query: 103 I--YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 160 I A +L + L LE+ ++VDS+ + Sbjct: 279 ISNRADRLNITAHELFLYSATD----LELVIGSITEIQPRAVIVDSIQTVYLAEANGSAG 334 Query: 161 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYA 220 S + + L K++ + + + K G + G + + + Sbjct: 335 SVSQ------QVRECATALLRAAKETKIPIFLVGHV-TKGGDIAGPKILEHVVDVVLYME 387 Query: 221 SVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGV 280 RL R+ ++VVKN+ + + F+++ G+ +L + Sbjct: 388 GERLQSHRL---------------LRVVKNRYGSTDEVGVFEMVQE-GLAAVASPSELFL 431 Query: 281 KEKLIEKAGA 290 + A Sbjct: 432 SARNENLTNA 441 >UniRef50_Q6BWA8 DEHA2B13024p n=2 Tax=Debaryomyces hansenii RepID=Q6BWA8_DEBHA Length = 569 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 82/270 (30%), Gaps = 68/270 (25%) Query: 7 KQKALAAALG-QIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEI 65 K++ A+ ++++FGK E I TG +LD L GG+P+G I EI Sbjct: 69 KKECTEASTQCSLKERFGK-------EQTGDKCHFIPTGLEALDRQLN-GGIPLGEITEI 120 Query: 66 YGPESSGKTTLTLQVIAAAQREGKT----CAFIDAEHALDPIYARKL----------GVD 111 +G GK+ L LQ+ Q G C +I E L+ + V Sbjct: 121 FGASGCGKSQLLLQLCIYTQLVGDPENNQCIYISTESPLETRRLHDMIDHYNAKSDKKVS 180 Query: 112 IDNLLCSQPDTGEQALEICDALA------RSGAVDVIVVDSVAALTPKAE---------- 155 +DN+ C E G V I++DS++ E Sbjct: 181 MDNISCIYCQDIENQDHTLFTQLPVKLSQEKGKVRAIIIDSISHHLRLEEAITNTMYITD 240 Query: 156 -----------------------------IEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 186 + + + + R L K + Sbjct: 241 HIKAQEEALTDSKEYAEIKTKLDQQFKAFFKSTPKYQNRIAKTQYLMLLHRHLLSIAKDN 300 Query: 187 NTLLIFINQIRMKIGVMFGNPETTTGGNAL 216 N +I NQ+ + ++L Sbjct: 301 NIAVITANQVSDYPENITDLSIYEDADDSL 330 >UniRef50_O43542 DNA repair protein XRCC3 n=19 Tax=Euteleostomi RepID=XRCC3_HUMAN Length = 346 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 84/270 (31%), Gaps = 46/270 (17%) Query: 31 GEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 90 E + +S G LD L GGLP+ I E+ G S+GKT L LQ+ A Q + Sbjct: 72 KERFPTQHQRLSLGCPVLDALL-RGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQH 130 Query: 91 ------CAFIDAEHALDPIYARKL------------GVDIDN------LLCSQPDTGEQA 126 +I E A ++L G + + + Sbjct: 131 GGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTL 190 Query: 127 LEICDA----LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182 LE + L G ++V+DSVAA AR + L Sbjct: 191 LECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAP-----RARHLQSLGATLREL 245 Query: 183 LKQSNTLLIFINQIRMKIG---------VMFGNPETTTGGNALKFYASVRLDIRRIGAVK 233 + ++ INQ+ + + + G VRL R+ Sbjct: 246 SSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLR--- 302 Query: 234 EGENVVGSETRVKVVKNKIAAPFKQAEFQI 263 E E +G R V + P + I Sbjct: 303 EEEAALGCPARTLRVLSAPHLPPSSCSYTI 332 >UniRef50_B6BU53 DNA repair protein radA n=1 Tax=beta proteobacterium KB13 RepID=B6BU53_9PROT Length = 454 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 113/289 (39%), Gaps = 34/289 (11%) Query: 7 KQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIY 66 +++A+ + + + K +++ + E ++ T + LD LG GL G + I Sbjct: 34 EEQAVQTSTSRFKSLNKKSNLININEVEINEIFRHPTNNSELDRVLGG-GLVPGGVTLIG 92 Query: 67 GPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI--YARKLGVDIDNLLCSQPD 121 G GK+TL +Q +++ + + T +I E +++ + AR+L +++ +LL Sbjct: 93 GDPGIGKSTLLIQALSSLTKNPNQEITAIYITGEESIEQVAMRARRLDLEVSDLLVL--- 149 Query: 122 TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 181 E L + V+V+DS+ L + S + A L Sbjct: 150 -SEINLGNIITVIEKEKPSVVVIDSIQTLFSEELNSAPGSVSQVRECAAQ-------LTR 201 Query: 182 NLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGS 241 K ++ +IF+ + K G + G + + ++ R+ Sbjct: 202 VAKANDVSMIFVGHV-TKEGSIAGPRVLEHIVDTVLYFEGESNSSYRL------------ 248 Query: 242 ETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGA 290 V+ +KN+ A + + + +G+ + + E ++AG+ Sbjct: 249 ---VRSIKNRYGAVNELGIYSMTE-KGLKEILNPSAIFLSETSFDQAGS 293 >UniRef50_D1H4Y9 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=4 Tax=Magnoliophyta RepID=D1H4Y9_VITVI Length = 371 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 92/293 (31%), Gaps = 67/293 (22%) Query: 40 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAF 93 + T LD ALG GG+P G + E+ GP GKT L++ A + Sbjct: 83 HLPTRLKGLDEALG-GGIPFGVLTELVGPPGIGKTQFCLKLSLLASLPASYGGLDGRVIY 141 Query: 94 IDAEHALDPIYARKLGVDIDN---------------LLCSQPDTGEQALEICDAL---AR 135 IDAE ++G +L +P + + E + Sbjct: 142 IDAESKFSSRRMIEIGSKSFPEIFHVEGMAKEACPLILVLRPTSLSEFTESLQHIKISLL 201 Query: 136 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 195 V ++V+DS+AAL +G + + + + S ++ NQ Sbjct: 202 QNHVKLLVIDSMAALVTGEYDQGP-------TRQHSLGWHISFVKSVAEFSRIPIVVTNQ 254 Query: 196 IRM--------------------KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 +R F + G ++RL + Sbjct: 255 VRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVTIRLVL--------- 305 Query: 236 ENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKA 288 E G +KV K+ I+ P F I L D G++ K + + Sbjct: 306 EAKAGQRF-LKVAKSPISPPLA-FPFNITPSG----ISLLNDEGIEMKGPQIS 352 >UniRef50_B2B0Y8 Predicted CDS Pa_3_7770 n=1 Tax=Podospora anserina RepID=B2B0Y8_PODAN Length = 500 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 27/208 (12%) Query: 24 KGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 83 + + S TIST LD+ALG GG+P G I EI G ++GKT L ++ A Sbjct: 100 TSHLKHTADTLSSQWITISTLDPHLDLALG-GGIPTGHITEITGESAAGKTQFLLTLLLA 158 Query: 84 AQRE-----GKTCAFIDAEHALDPIYARKL--------------GVDIDNLLCSQPDTGE 124 Q + +I E L ++ +D ++ + E Sbjct: 159 VQLPPPHGLSRPALYISTEAPLSTRRLSQMITENPLFSTLPRSARPTLDKIISTTTPDLE 218 Query: 125 QALEICDA----LARSGAVDVIVVDSVAALTPKAEIEGEIG---DSHMGLAARMMSQAMR 177 I V ++++DSVAA S+MG + + Sbjct: 219 SQDHILTYQAPVEIARRNVGLLIIDSVAANYRAEFERPTPNSNLSSNMGARTNELIKLGM 278 Query: 178 KLAGNLKQSNTLLIFINQIRMKIGVMFG 205 L ++ N ++ NQ+ + G Sbjct: 279 HLKDLAEKYNLAVVVSNQVADRFSGTGG 306 >UniRef50_C7H3I1 Toprim domain protein n=16 Tax=Bacteria RepID=C7H3I1_9FIRM Length = 636 Score = 108 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 65/343 (18%), Positives = 115/343 (33%), Gaps = 44/343 (12%) Query: 8 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLD----IALGAGGLPMGRIV 63 + L + ++ + ++ L E + I +D L +P G++ Sbjct: 280 NEVLQHRAEITDGKYIREAVYGLKEPPQEETVEII-RMSEVDTQTVEWLWEPYIPFGKVT 338 Query: 64 EIYGPESSGKTTLTLQVIAA----------AQREGKTCAFIDAEHALD---PIYARKLGV 110 + G GKTT L++ AA A E + AE L + Sbjct: 339 IVQGNPGEGKTTFALRLAAACTNRKPFPHMAAHEPFNVIYQTAEDGLGDTIKPRLMEAEA 398 Query: 111 DIDNLLCSQPDTGEQAL--EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 168 D+D +L +L E + R +I++D + A +G+ Sbjct: 399 DLDRVLVIDESKQGLSLSDERIERAIRQTGARLIILDPIQAY---------MGEKTDMNR 449 Query: 169 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 228 A + R+LA +++ +I I + G G ++ F A+ R + Sbjct: 450 ANEVRPMFRRLADVAERTGCAVILIGHLNKAAGGQSAYR----GLGSIDFRAAARSVLLI 505 Query: 229 IGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKA 288 +E + + K+ +A K F + G ++ GE D+ E L Sbjct: 506 GRVKREP-----NVRVIVHDKSSLAPEGKPVAFCLDPETGFSWIGE-YDITADELLSGAG 559 Query: 289 GAWYSYKGEKIGQGKANATAWLKDNPETA-KEIEKKVRELLLS 330 G K Q + L D E A +EI K E +S Sbjct: 560 GN----TATKTEQAERLILDLLADGKELASEEIVKAAAEAGIS 598 >UniRef50_B3QSF7 Putative circadian clock protein, KaiC n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSF7_CHLT3 Length = 574 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 116/324 (35%), Gaps = 32/324 (9%) Query: 27 IMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 86 I +G + + + + +G SLD LG G G V + G +GK++L Q AA Sbjct: 247 ITSVGLNYDVATDFVPSGLSSLDELLGGRGFYRGSSVLLTGAAGTGKSSLASQFAQAACG 306 Query: 87 EGKTCAFIDAEHALDPIY--ARKLGVDIDN-----LLCSQPDT-----GEQALEICDALA 134 G+ C +++ E ++ I R +GV+++ LL +P E L L Sbjct: 307 RGEKCLYLNMEESVWQIVRNMRSIGVELEPFIEKGLLLFEPTRSTMCGLEYHLVKLIKLL 366 Query: 135 RSGAVDVIVVDSVAALTP---KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI 191 + +++D V++ E++ + L R ++ M L+ Q+ + Sbjct: 367 ETYEPQHLIIDPVSSFLAVGESIEVKSMMSRLIDYLKMRHITTIMTNLSDTNAQNEITQM 426 Query: 192 FINQIRM--------KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSET 243 I+ + + + +R + + E G E Sbjct: 427 DISSLMDTWMTVQMVRNQNEQNRLIYIIKSRGMGHSNQMREFLITSEGIHLMEVYRGQEG 486 Query: 244 RVKVVKNKIAAPFKQAEFQILYGEGIN-FYGELVDLGVKEKL----IEKAGAWYSYKGEK 298 V+ A ++A + + L+ + K K+ IE + Y Y + Sbjct: 487 ----VRLGTARTLQEARDSMEDALMKDERELILLQMARKRKILDAQIESLRSEYEYFENE 542 Query: 299 IGQGKANATAWLKDNPETAKEIEK 322 + A + +T ++IE+ Sbjct: 543 LKHQLHVAEMRKTQHTQTKEKIEE 566 Score = 86.5 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 11/223 (4%) Query: 28 MRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 87 M E + TG LD L GG+P GR + G GKT L ++ + ++ Sbjct: 8 MSNVEKMKAGLPKCPTGIKGLDEVL-FGGIPKGRSTMVLGNAGCGKTLLAMEFLVQGIQQ 66 Query: 88 -GKTCAFIDAEHALDPIY--ARKLGVDID------NLLCSQPDTGEQALEICDALARSGA 138 G F+ E + + + G +++ LL D G+ G Sbjct: 67 FGAHGLFVSFEEKKEDLLEDMQSFGWNLEAAEQSGALLIKHLDLGDSEFLESGEYDLGGL 126 Query: 139 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 198 + + ++ + R+L LK +I + Sbjct: 127 FVRLEFAIDKIGAKRVVLDTVETLFTTYKNVGALRTEFRRLIRWLKSKGVTVIITGETDS 186 Query: 199 KIGVMFG-NPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG 240 G + L ++ RR+ +K + G Sbjct: 187 YGKTRHGIEAFVSDCVVQLDNRIQNQVPTRRLRVLKYRGSFHG 229 >UniRef50_Q9FKM5 DNA repair protein XRCC3 homolog n=17 Tax=Eukaryota RepID=XRCC3_ARATH Length = 304 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 86/290 (29%), Gaps = 61/290 (21%) Query: 33 DRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----- 87 RS ++TG LD L GG+ + EI GKT L LQ+ Q Sbjct: 13 RRSPTNRKLTTGCEILDGCL-RGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPISHGG 71 Query: 88 -GKTCAFIDAEHALDPIYARKLGVDI----------------DNLLCSQPDTGEQALEIC 130 + ++ +E +L D++ + + +I Sbjct: 72 LNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLFDIM 131 Query: 131 DAL-------ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 183 + + +IV+DSVAAL S + + + + KL Sbjct: 132 PRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTP---SDLKKRSSLFFKISGKLKQLA 188 Query: 184 KQSNTLLIFINQIRMKIGV----------------MFGNPETTTGGNALKFYASVRLDIR 227 + + ++ NQ+ + G + G A + R I Sbjct: 189 SKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFIS 248 Query: 228 R--IGAVKEGENVVGS---------ETRVKVVKNKIAAPFKQAEFQILYG 266 R VK+ + + R+ +V + P EF I Sbjct: 249 RSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPY-LPGSSCEFMITRE 297 >UniRef50_A1RY65 Rad51-like protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RY65_THEPD Length = 250 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 32/217 (14%) Query: 36 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GK 89 + ISTG SLD L GG+ +G I E G +GKT + Q+ Q Sbjct: 25 EESARISTGVRSLDDLL-EGGIEVGSITEFIGEFGAGKTQICHQLSVMVQLPKDKGGLNA 83 Query: 90 TCAFIDAEHALDPIY----ARKLGVD----IDNLLCSQPDT---GEQALEICDALARSGA 138 ++D E P AR G+D ++N++ ++ + E+ L A G Sbjct: 84 RALYVDTEGTFRPERIVQIARARGLDPEKTLENIIYARAYSLGGLEELLSKALAEVVKGD 143 Query: 139 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 198 V ++V+D L + + G AR + + L ++ + ++ Q+ Sbjct: 144 VGLVVLDEATRLVRASGLGA-------GERARAYAAIVSSLEAVA-EAGSAVVVARQVV- 194 Query: 199 KIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 235 FG+ GG AL YA + + + + G+ +E Sbjct: 195 -----FGDGVRPAGGAALDGYAHLSVFLSKRGSAREA 226 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.118 0.262 Lambda K H 0.267 0.0363 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,363,862,723 Number of Sequences: 3077464 Number of extensions: 47400464 Number of successful extensions: 261289 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1193 Number of HSP's successfully gapped in prelim test: 1855 Number of HSP's that attempted gapping in prelim test: 257444 Number of HSP's gapped (non-prelim): 3376 length of query: 353 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 223 effective length of database: 640,326,036 effective search space: 142792706028 effective search space used: 142792706028 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 93 (40.6 bits)