16/01/2012 14:13:07 : INFO  : Run start: Mon Jan 16 14:13:07 GMT 2012
16/01/2012 14:13:07 : INFO  : Initialised job
16/01/2012 14:13:07 : INFO  : Renaming log file 'phyre2_20120116_141307.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/e2013053e895f794/phyre_20120116_141307.log'
16/01/2012 14:13:07 : INFO  : Initialised job:
Sequence
>batch____
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLN
AQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNI
DGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRV
RHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPD
LDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGR
MAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL

16/01/2012 14:13:07 : INFO  : Checked sequence
16/01/2012 14:13:07 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 14:13:07 : INFO  : PSI-BLAST 3 iterations
16/01/2012 14:15:59 : INFO  : PSI-BLAST 5 iterations
16/01/2012 14:20:46 : INFO  : Finished PSI-BLAST
16/01/2012 14:20:46 : INFO  : Running Buildali to generate a3m file
16/01/2012 16:04:37 : INFO  : Converting to HMM
16/01/2012 16:04:48 : INFO  : Calibrating HMM
16/01/2012 16:04:57 : INFO  : Searching HMM database
16/01/2012 16:11:04 : INFO  : Finished buildali
16/01/2012 16:11:04 : INFO  : Predicting secondary structure
16/01/2012 16:11:04 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 16:11:04 : INFO  : Predicting Disordered regions
16/01/2012 16:11:04 : INFO  : Predicted Disorder (Disopred)
16/01/2012 16:11:04 : INFO  : Running memsat_svm check
16/01/2012 16:12:51 : INFO  : Running memsat_svm full
16/01/2012 16:14:40 : INFO  : Predicted Transmembrane (memsat_svm) ID 'e2013053e895f794'
16/01/2012 16:14:42 : INFO  : Initialising fold library search
16/01/2012 16:14:42 : INFO  : Initialised search input
16/01/2012 16:14:42 : INFO  : Building Ensemble models
16/01/2012 16:14:42 : INFO  : Building hh.c3kjxD_.model.1.pdb
16/01/2012 16:14:42 : INFO  : Building hh.c1zvvA_.model.2.pdb
16/01/2012 16:14:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e2013053e895f794/hh.c1zvvA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e2013053e895f794/c1zvvA_.2.pdb
16/01/2012 16:14:43 : INFO  : Building hh.c1bdhA_.model.3.pdb
16/01/2012 16:14:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e2013053e895f794/hh.c1bdhA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e2013053e895f794/c1bdhA_.3.pdb
16/01/2012 16:14:43 : INFO  : Building hh.c3h5tA_.model.4.pdb
16/01/2012 16:14:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e2013053e895f794/hh.c3h5tA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e2013053e895f794/c3h5tA_.4.pdb
16/01/2012 16:14:44 : INFO  : Building c3kjxD_.1.pdb
16/01/2012 16:14:44 : INFO  : Building c1zvvA_.2.pdb
16/01/2012 16:14:45 : INFO  : Building c1bdhA_.3.pdb
16/01/2012 16:14:45 : INFO  : Building c3h5tA_.4.pdb
16/01/2012 16:14:45 : INFO  : Building d2nzug1.5.pdb
16/01/2012 16:14:46 : INFO  : Building c3c3kA_.6.pdb
16/01/2012 16:14:46 : INFO  : Building c2iksA_.7.pdb
16/01/2012 16:14:46 : INFO  : Building c3k4hA_.8.pdb
16/01/2012 16:14:47 : INFO  : Building c3h5oB_.9.pdb
16/01/2012 16:14:47 : INFO  : Building c3e3mA_.10.pdb
16/01/2012 16:14:48 : INFO  : Building c2o20H_.11.pdb
16/01/2012 16:14:48 : INFO  : Building c3qk7C_.12.pdb
16/01/2012 16:14:48 : INFO  : Building c3hcwB_.13.pdb
16/01/2012 16:14:49 : INFO  : Building c3d8uA_.14.pdb
16/01/2012 16:14:49 : INFO  : Building c3mizB_.15.pdb
16/01/2012 16:14:50 : INFO  : Building c3cs3A_.16.pdb
16/01/2012 16:14:50 : INFO  : Building c3egcF_.17.pdb
16/01/2012 16:14:50 : INFO  : Building c3dbiA_.18.pdb
16/01/2012 16:14:51 : INFO  : Building c3kkeA_.19.pdb
16/01/2012 16:14:51 : INFO  : Building c3bblA_.20.pdb
16/01/2012 16:14:59 : INFO  : Finished HH model building
16/01/2012 16:14:59 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 16:15:05 : INFO  : html domain output complete ID 'e2013053e895f794'
16/01/2012 17:41:06 : INFO  : Run end  : Mon Jan 16 17:41:06 GMT 2012
