Phyre 2 alignment of P0AAL6 with c3lpeF_

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Job Description | P0AAL6
Confidence | 6.97% | Date | Thu Jan 5 11:13:14 GMT 2012
Rank | 87 | Aligned Residues | 33
% Identity | 21% | Template | c3lpeF_
PDB info | PDB header:transferase | Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; | PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii
Resolution | 1.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |  |  | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | C | R | Q | C | K | E | P | Q | C | M | N | V | C | P | I | . | . | G | A | I | T | W | Q | Q | K | E | G | C | I | T | V | D | H | K | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | C | L | K | C | K | Y | L | T | N | D | E | I | C | P | I | C | H | S | P | T | S | E | N | W | I | G | L | L | I | V | I | N | P | E | K
Template Known Secondary structure |  |  | T | T | T |  | B |  |  | S | S | S | B |  | T | T | T |  |  | B |  |  | S |  |  |  |  |  |  |  |  | S |  | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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