Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	D	I	A	H	N	L	A	Q	V	R	D	K	I	S	A	A	A	T	R	C	G	R	S	P	E	E	I	T	L	L	A	V	S	K	T	K	P	A	S	A	I	A	E	A	I	D	A	G	Q	R	Q	F	G	E	N	Y	V	Q
Secondary structure
SS confidence
Disorder		?	?	?																			?	?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	G	V	D	K	I	R	H	F	Q	E	L	G	V	T	G	L	E	W	H	F	I	G	P	L	Q	S	N	K	S	R	L	V	A	E	H	F	D	W	C	H	T	I	D	R	L	R	I	A	T	R	L	N	D	Q	R	P	A	E	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	P	L	N	V	L	I	Q	I	N	I	S	D	E	N	S	K	S	G	I	Q	L	A	E	L	D	E	L	A	A	A	V	A	E	L	P	R	L	R	L	R	G	L	M	A	I	P	A	P	E	S	E	Y	V	R	Q	F	E	V	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence		R	Q	M	A	V	A	F	A	G	L	K	T	R	Y	P	H	I	D	T	L	S	L	G	M	S	D	D	M	E	A	A	I	A	A	G	S	T	M	V	R	I	G	T	A	I	F	G	A	R	D	Y	S	K	K
Secondary structure
SS confidence
Disorder																																																?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1w8g chain A Region: 3 - 228 Aligned: 226 Modelled: 226 Confidence: 100.0% Identity: 100% PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs Phyre2 PDB 3cpg chain A Region: 2 - 226 Aligned: 225 Modelled: 225 Confidence: 100.0% Identity: 33% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an unknown protein from bifidobacterium2 adolescentis Phyre2 PDB 3r79 chain B Region: 3 - 231 Aligned: 217 Modelled: 229 Confidence: 100.0% Identity: 38% PDB header:structure genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharactertized protein from agrobacterium2 tumefaciens Phyre2 PDB 1ct5 chain A Region: 2 - 227 Aligned: 210 Modelled: 219 Confidence: 100.0% Identity: 36% Fold: TIM beta/alpha-barrel Superfamily: PLP-binding barrel Family: "Hypothetical" protein ybl036c Phyre2 PDB 1xfc chain B Region: 1 - 232 Aligned: 222 Modelled: 232 Confidence: 100.0% Identity: 15% PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the 1.9 a crystal structure of alanine racemase from mycobacterium2 tuberculosis contains a conserved entryway into the active site Phyre2 PDB 1bd0 chain A domain 2 Region: 7 - 233 Aligned: 215 Modelled: 227 Confidence: 100.0% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: PLP-binding barrel Family: Alanine racemase-like, N-terminal domain Phyre2 PDB 1vfs chain A domain 2 Region: 7 - 233 Aligned: 214 Modelled: 227 Confidence: 100.0% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: PLP-binding barrel Family: Alanine racemase-like, N-terminal domain Phyre2 PDB 3e6e chain C Region: 7 - 234 Aligned: 217 Modelled: 228 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from e.faecalis2 complex with cycloserine Phyre2 PDB 3oo2 chain A Region: 7 - 230 Aligned: 209 Modelled: 219 Confidence: 100.0% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col Phyre2 PDB 2dy3 chain B Region: 7 - 234 Aligned: 210 Modelled: 228 Confidence: 100.0% Identity: 17% PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum Phyre2 PDB 3mub chain B Region: 7 - 234 Aligned: 213 Modelled: 228 Confidence: 100.0% Identity: 18% PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from streptococcus2 pneumoniae Phyre2 PDB 1rcq chain A domain 2 Region: 1 - 233 Aligned: 205 Modelled: 233 Confidence: 100.0% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: PLP-binding barrel Family: Alanine racemase-like, N-terminal domain Phyre2 PDB 1niu chain A Region: 7 - 233 Aligned: 213 Modelled: 221 Confidence: 100.0% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: alanine racemase with bound inhibitor derived from l-2 cycloserine Phyre2 PDB 3kw3 chain B Region: 7 - 234 Aligned: 211 Modelled: 223 Confidence: 100.0% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from bartonella henselae with2 covalently bound pyridoxal phosphate Phyre2 PDB 1vft chain A Region: 7 - 233 Aligned: 216 Modelled: 227 Confidence: 100.0% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae Phyre2 PDB 3oo2 chain B Region: 7 - 230 Aligned: 207 Modelled: 219 Confidence: 100.0% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col Phyre2 PDB 3co8 chain B Region: 1 - 234 Aligned: 213 Modelled: 223 Confidence: 100.0% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from oenococcus oeni Phyre2 PDB 3hur chain A Region: 1 - 233 Aligned: 211 Modelled: 222 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from oenococcus oeni Phyre2 PDB 2vd9 chain A Region: 7 - 234 Aligned: 208 Modelled: 223 Confidence: 100.0% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from bacillus2 anthracis (ba0252) with bound l-ala-p Phyre2 PDB 2rjg chain C Region: 7 - 233 Aligned: 206 Modelled: 227 Confidence: 100.0% Identity: 11% PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of biosynthetic alaine racemase from escherichia2 coli Phyre2 1 c1w8gA_ 2 c3cpgA_ 3 c3r79B_ 4 d1ct5a_ 5 c1xfcB_ 6 d1bd0a2 7 d1vfsa2 8 c3e6eC_ 9 c3oo2A_ 10 c2dy3B_ 11 c3mubB_ 12 d1rcqa2 13 c1niuA_ 14 c3kw3B_ 15 c1vftA_ 16 c3oo2B_ 17 c3co8B_ 18 c3hurA_ 19 c2vd9A_ 20 c2rjgC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1w8gA_ 100.0 100 PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs 2 c3cpgA_ 100.0 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an unknown protein from bifidobacterium2 adolescentis 3 c3r79B_ 100.0 38 PDB header:structure genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharactertized protein from agrobacterium2 tumefaciens 4 d1ct5a_ 100.0 36 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:"Hypothetical" protein ybl036c 5 c1xfcB_ 100.0 15 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the 1.9 a crystal structure of alanine racemase from mycobacterium2 tuberculosis contains a conserved entryway into the active site 6 d1bd0a2 100.0 16 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 7 d1vfsa2 100.0 18 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 8 c3e6eC_ 100.0 16 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from e.faecalis2 complex with cycloserine 9 c3oo2A_ 100.0 13 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col 10 c2dy3B_ 100.0 17 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum 11 c3mubB_ 100.0 18 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from streptococcus2 pneumoniae 12 d1rcqa2 100.0 19 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 13 c1niuA_ 100.0 17 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: alanine racemase with bound inhibitor derived from l-2 cycloserine 14 c3kw3B_ 100.0 13 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from bartonella henselae with2 covalently bound pyridoxal phosphate 15 c1vftA_ 100.0 17 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae 16 c3oo2B_ 100.0 13 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col 17 c3co8B_ 100.0 13 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from oenococcus oeni 18 c3hurA_ 100.0 19 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from oenococcus oeni 19 c2vd9A_ 100.0 18 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: the crystal structure of alanine racemase from bacillus2 anthracis (ba0252) with bound l-ala-p 20 c2rjgC_ 100.0 11 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of biosynthetic alaine racemase from escherichia2 coli 21 c2odoC_ not modelled 100.0 17 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase 22 c3anuA_ not modelled 100.0 13 PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of d-serine dehydratase from chicken kidney 23 c3llxA_ not modelled 100.0 16 PDB header:isomerase Chain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution 24 c3gwqB_ not modelled 100.0 12 PDB header:lyase Chain: B: PDB Molecule:d-serine deaminase; PDBTitle: crystal structure of a putative d-serine deaminase (bxe_a4060) from2 burkholderia xenovorans lb400 at 2.00 a resolution 25 c2qghA_ not modelled 100.0 9 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine 26 c2j66A_ not modelled 100.0 12 PDB header:lyase Chain: A: PDB Molecule:btrk; PDBTitle: structural characterisation of btrk decarboxylase from2 butirosin biosynthesis 27 c2p3eA_ not modelled 100.0 11 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus 28 c3n2bD_ not modelled 100.0 16 PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. 29 c1tufA_ not modelled 99.9 13 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from m.2 jannaschi 30 c1njjC_ not modelled 99.9 11 PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 31 d1twia2 not modelled 99.9 13 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 32 c2nvaH_ not modelled 99.9 12 PDB header:lyase Chain: H: PDB Molecule:arginine decarboxylase, a207r protein; PDBTitle: the x-ray crystal structure of the paramecium bursaria2 chlorella virus arginine decarboxylase bound to agmatine 33 d1hkva2 not modelled 99.9 15 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 34 d7odca2 not modelled 99.9 13 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 35 d1f3ta2 not modelled 99.9 12 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 36 c2pljA_ not modelled 99.9 15 PDB header:lyase Chain: A: PDB Molecule:lysine/ornithine decarboxylase; PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus 37 c2o0tB_ not modelled 99.8 15 PDB header:lyase Chain: B: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation 38 c1knwA_ not modelled 99.8 13 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase 39 d1d7ka2 not modelled 99.8 11 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 40 c2yxxA_ not modelled 99.8 13 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) 41 c2on3A_ not modelled 99.8 13 PDB header:lyase Chain: A: PDB Molecule:ornithine decarboxylase; PDBTitle: a structural insight into the inhibition of human and2 leishmania donovani ornithine decarboxylases by 3-aminooxy-3 1-aminopropane 42 c3nzqB_ not modelled 99.7 15 PDB header:lyase Chain: B: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600 43 c3btnA_ not modelled 99.7 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:antizyme inhibitor 1; PDBTitle: crystal structure of antizyme inhibitor, an ornithine2 decarboxylase homologous protein 44 c3n2oA_ not modelled 99.7 11 PDB header:lyase Chain: A: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus 45 c1d7kB_ not modelled 99.7 12 PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution 46 c3nzpA_ not modelled 99.6 13 PDB header:lyase Chain: A: PDB Molecule:arginine decarboxylase; PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53 47 d1knwa2 not modelled 99.6 13 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 48 c3n29A_ not modelled 99.5 11 PDB header:lyase Chain: A: PDB Molecule:carboxynorspermidine decarboxylase; PDBTitle: crystal structure of carboxynorspermidine decarboxylase complexed with2 norspermidine from campylobacter jejuni 49 c3mt1B_ not modelled 99.1 13 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 50 d1rpxa_ not modelled 95.4 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 51 d2flia1 not modelled 94.6 17 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 52 c2h90A_ not modelled 94.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:xenobiotic reductase a; PDBTitle: xenobiotic reductase a in complex with coumarin 53 d1h1ya_ not modelled 93.6 17 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 54 c3hf3A_ not modelled 92.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:chromate reductase; PDBTitle: old yellow enzyme from thermus scotoductus sa-01 55 d1tqja_ not modelled 92.0 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 56 c3ct7E_ not modelled 91.5 16 PDB header:isomerase Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase; PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12 57 d1djqa1 not modelled 91.2 10 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 58 d1ps9a1 not modelled 91.2 14 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 59 c2y85D_ not modelled 91.0 12 PDB header:isomerase Chain: D: PDB Molecule:phosphoribosyl isomerase a; PDBTitle: crystal structure of mycobacterium tuberculosis phosphoribosyl2 isomerase with bound rcdrp 60 d1tqxa_ not modelled 87.9 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 61 c1djnB_ not modelled 87.6 10 PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) 62 c3inpA_ not modelled 86.7 10 PDB header:isomerase Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase; PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis. 63 c3k30B_ not modelled 86.3 17 PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex 64 c2vwtA_ not modelled 85.8 14 PDB header:lyase Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase; PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex 65 c1ps9A_ not modelled 82.9 13 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 66 c3qz6A_ not modelled 80.7 10 PDB header:lyase Chain: A: PDB Molecule:hpch/hpai aldolase; PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2 67 d1dxea_ not modelled 79.7 13 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase 68 c2v5jB_ not modelled 79.4 12 PDB header:lyase Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PDBTitle: apo class ii aldolase hpch 69 c1izcA_ not modelled 79.1 14 PDB header:lyase Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase; PDBTitle: crystal structure analysis of macrophomate synthase 70 d1izca_ not modelled 79.1 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase 71 d1qapa1 not modelled 76.1 13 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 72 d1v6ta_ not modelled 75.6 14 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 73 d2dfaa1 not modelled 72.3 19 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 74 d1o4ua1 not modelled 70.7 12 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 75 c3cu2A_ not modelled 67.5 6 PDB header:isomerase Chain: A: PDB Molecule:ribulose-5-phosphate 3-epimerase; PDBTitle: crystal structure of ribulose-5-phosphate 3-epimerase (yp_718263.1)2 from haemophilus somnus 129pt at 1.91 a resolution 76 c3gr7A_ not modelled 64.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dehydrogenase; PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form 77 c3l5aA_ not modelled 62.5 9 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus 78 c3kruC_ not modelled 61.7 13 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39 79 d1vyra_ not modelled 58.3 11 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 80 c2gq8A_ not modelled 57.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, fmn-binding; PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone 81 d1qo2a_ not modelled 56.9 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 82 c3qc3B_ not modelled 56.2 16 PDB header:isomerase Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase; PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution 83 c2yciX_ not modelled 55.7 9 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 84 c2c3zA_ not modelled 52.5 12 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus 85 d1y0ea_ not modelled 51.0 11 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like 86 c2x5eA_ not modelled 48.9 15 PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa 87 d1qpoa1 not modelled 47.1 8 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 88 d1gwja_ not modelled 46.8 14 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 89 d1gvfa_ not modelled 45.2 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 90 d1z41a1 not modelled 44.6 12 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 91 d1vc4a_ not modelled 42.8 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 92 c2zviB_ not modelled 42.8 15 PDB header:isomerase Chain: B: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate PDBTitle: crystal structure of 2,3-diketo-5-methylthiopentyl-1-2 phosphate enolase from bacillus subtilis 93 c2vkzH_ not modelled 40.7 12 PDB header:transferase Chain: H: PDB Molecule:fatty acid synthase subunit beta; PDBTitle: structure of the cerulenin-inhibited fungal fatty acid2 synthase type i multienzyme complex 94 d1vzwa1 not modelled 39.7 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 95 c2v82A_ not modelled 39.0 13 PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PDBTitle: kdpgal complexed to kdpgal 96 c1yadD_ not modelled 38.4 12 PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis 97 c2qv5A_ not modelled 36.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 98 d1wbha1 not modelled 36.4 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 99 c2dzaA_ not modelled 35.3 14 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate 100 c2oemA_ not modelled 34.5 15 PDB header:isomerase Chain: A: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate enolase; PDBTitle: crystal structure of a rubisco-like protein from geobacillus2 kaustophilus liganded with mg2+ and 2,3-diketohexane 1-phosphate 101 d1ka9f_ not modelled 34.4 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 102 c1rr2A_ not modelled 33.0 12 PDB header:transferase Chain: A: PDB Molecule:transcarboxylase 5s subunit; PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid 103 d1ajza_ not modelled 32.8 17 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 104 c3atyA_ not modelled 31.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:prostaglandin f2a synthase; PDBTitle: crystal structure of tcoye 105 c2jfqA_ not modelled 26.9 10 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate 106 c3gkaB_ not modelled 26.6 15 PDB header:oxidoreductase Chain: B: PDB Molecule:n-ethylmaleimide reductase; PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei 107 d1thfd_ not modelled 23.0 10 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 108 d2zdra2 not modelled 21.6 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 109 c3ju3A_ not modelled 21.6 12 PDB header:oxidoreductase Chain: A: PDB Molecule:probable 2-oxoacid ferredoxin oxidoreductase, alpha chain; PDBTitle: crystal structure of alpha chain of probable 2-oxoacid ferredoxin2 oxidoreductase from thermoplasma acidophilum 110 c2x7vA_ not modelled 20.1 7 PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0