Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	S	V	Q	S	N	S	A	V	L	V	H	F	T	L	K	L	D	D	G	T	T	A	E	S	T	R	N	N	G	K	P	A	L	F	R	L	G	D	A	S	L	S	E	G	L	E	Q	H	L	L	G	L	K	V	G	D	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	T	F	S	L	E	P	D	A	A	F	G	V	P	S	P	D	L	I	Q	Y	F	S	R	R	E	F	M	D	A	G	E	P	E	I	G	A	I	M	L	F	T	A	M	D	G	S	E	M	P	G	V	I	R	E	I	N	G	D	S
Secondary structure
SS confidence
Disorder													?	?														?	?	?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Sequence		I	T	V	D	F	N	H	P	L	A	G	Q	T	V	H	F	D	I	E	V	L	E	I	D	P	A	L	E	A
Secondary structure
SS confidence
Disorder																										?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kfw chain A Region: 1 - 148 Aligned: 144 Modelled: 148 Confidence: 100.0% Identity: 31% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli Phyre2 PDB 2k8i chain A Region: 1 - 148 Aligned: 144 Modelled: 148 Confidence: 100.0% Identity: 31% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd Phyre2 PDB 2kr7 chain A Region: 2 - 148 Aligned: 146 Modelled: 147 Confidence: 100.0% Identity: 24% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd Phyre2 PDB 3cgn chain A Region: 1 - 148 Aligned: 140 Modelled: 148 Confidence: 100.0% Identity: 30% PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd Phyre2 PDB 3pr9 chain A Region: 5 - 145 Aligned: 135 Modelled: 141 Confidence: 100.0% Identity: 30% PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 Phyre2 PDB 3prd chain A Region: 5 - 148 Aligned: 138 Modelled: 144 Confidence: 100.0% Identity: 29% PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 Phyre2 PDB 1ix5 chain A Region: 5 - 145 Aligned: 136 Modelled: 141 Confidence: 100.0% Identity: 31% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1q6u chain A Region: 3 - 147 Aligned: 94 Modelled: 96 Confidence: 99.8% Identity: 32% PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli Phyre2 PDB 1q6h chain A Region: 3 - 144 Aligned: 91 Modelled: 93 Confidence: 99.8% Identity: 29% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2pbc chain D Region: 3 - 145 Aligned: 93 Modelled: 93 Confidence: 99.8% Identity: 34% PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2 Phyre2 PDB 1c9h chain A Region: 3 - 144 Aligned: 93 Modelled: 93 Confidence: 99.8% Identity: 31% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1fd9 chain A Region: 3 - 146 Aligned: 93 Modelled: 93 Confidence: 99.8% Identity: 29% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 2ppn chain A domain 1 Region: 2 - 144 Aligned: 94 Modelled: 94 Confidence: 99.8% Identity: 33% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 1yat chain A Region: 2 - 144 Aligned: 95 Modelled: 97 Confidence: 99.8% Identity: 24% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 PDB 3jxv chain A Region: 2 - 145 Aligned: 98 Modelled: 98 Confidence: 99.8% Identity: 27% PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidyl-prolyl isomerase; PDBTitle: crystal structure of the 3 fkbp domains of wheat fkbp73 Phyre2 PDB 2vcd chain A Region: 3 - 147 Aligned: 94 Modelled: 96 Confidence: 99.8% Identity: 28% PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin Phyre2 PDB 1rou chain A Region: 2 - 144 Aligned: 94 Modelled: 94 Confidence: 99.7% Identity: 31% PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures Phyre2 PDB 2lgo chain A Region: 2 - 143 Aligned: 93 Modelled: 93 Confidence: 99.7% Identity: 32% PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a Phyre2 PDB 2vn1 chain A Region: 3 - 146 Aligned: 95 Modelled: 95 Confidence: 99.7% Identity: 25% PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 Phyre2 PDB 1q1c chain A domain 1 Region: 2 - 145 Aligned: 95 Modelled: 95 Confidence: 99.7% Identity: 31% Fold: FKBP-like Superfamily: FKBP-like Family: FKBP immunophilin/proline isomerase Phyre2 1 c2kfwA_ 2 c2k8iA_ 3 c2kr7A_ 4 c3cgnA_ 5 c3pr9A_ 6 c3prdA_ 7 d1ix5a_ 8 c1q6uA_ 9 d1q6ha_ 10 c2pbcD_ 11 d1c9ha_ 12 d1fd9a_ 13 d2ppna1 14 d1yata_ 15 c3jxvA_ 16 c2vcdA_ 17 c1rouA_ 18 c2lgoA_ 19 c2vn1A_ 20 d1q1ca1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kfwA_ 100.0 31 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 2 c2k8iA_ 100.0 31 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 3 c2kr7A_ 100.0 24 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 4 c3cgnA_ 100.0 30 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 5 c3pr9A_ 100.0 30 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 6 c3prdA_ 100.0 29 PDB header:chaperone, isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 7 d1ix5a_ 100.0 31 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 8 c1q6uA_ 99.8 32 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase fkpa; PDBTitle: crystal structure of fkpa from escherichia coli 9 d1q6ha_ 99.8 29 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 10 c2pbcD_ 99.8 34 PDB header:isomerase Chain: D: PDB Molecule:fk506-binding protein 2; PDBTitle: fk506-binding protein 2 11 d1c9ha_ 99.8 31 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 12 d1fd9a_ 99.8 29 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 13 d2ppna1 99.8 33 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 14 d1yata_ 99.8 24 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 15 c3jxvA_ 99.8 27 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidyl-prolyl isomerase; PDBTitle: crystal structure of the 3 fkbp domains of wheat fkbp73 16 c2vcdA_ 99.8 28 PDB header:isomerase Chain: A: PDB Molecule:outer membrane protein mip; PDBTitle: solution structure of the fkbp-domain of legionella2 pneumophila mip in complex with rapamycin 17 c1rouA_ 99.7 31 PDB header:rotamase (isomerase) Chain: A: PDB Molecule:fkbp59-i; PDBTitle: structure of fkbp59-i, the n-terminal domain of a 59 kda2 fk506-binding protein, nmr, 22 structures 18 c2lgoA_ 99.7 32 PDB header:isomerase Chain: A: PDB Molecule:fkbp; PDBTitle: solution nmr structure of a fkbp-type peptidyl-prolyl cis-trans2 isomerase from giardia lamblia, seattle structural genomics center3 for infectious disease target gilaa.00840.a 19 c2vn1A_ 99.7 25 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 20 d1q1ca1 99.7 31 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 21 d1r9ha_ not modelled 99.7 30 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 22 c2jwxA_ not modelled 99.7 19 PDB header:apoptosis, isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of the n-terminal domain of human fkbp382 (fkbp38ntd) 23 c3o5fA_ not modelled 99.7 29 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: fk1 domain of fkbp51, crystal form vii 24 d1pbka_ not modelled 99.7 27 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 25 c2f4eB_ not modelled 99.7 21 PDB header:signaling protein Chain: B: PDB Molecule:atfkbp42; PDBTitle: n-terminal domain of fkbp42 from arabidopsis thaliana 26 d1jvwa_ not modelled 99.7 29 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 27 c2ke0A_ not modelled 99.7 29 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei 28 c3o5dB_ not modelled 99.7 21 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp5; PDBTitle: crystal structure of a fragment of fkbp51 comprising the fk1 and fk22 domains 29 c2d9fA_ not modelled 99.7 17 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 8 variant; PDBTitle: solution structure of ruh-047, an fkbp domain from human2 cdna 30 c3oe2A_ not modelled 99.7 24 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: 1.6 a crystal structure of peptidyl-prolyl cis-trans isomerase ppiase2 from pseudomonas syringae pv. tomato str. dc3000 (pspto dc3000) 31 c1q1cA_ not modelled 99.7 23 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of n(1-260) of human fkbp52 32 d1u79a_ not modelled 99.6 29 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 33 d1kt0a2 not modelled 99.6 29 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 34 d1l1pa_ not modelled 99.6 20 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 35 d1kt0a3 not modelled 99.6 17 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 36 d1hxva_ not modelled 99.6 25 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 37 c1hxvA_ not modelled 99.6 25 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: ppiase domain of the mycoplasma genitalium trigger factor 38 c1kt0A_ not modelled 99.6 26 PDB header:isomerase Chain: A: PDB Molecule:51 kda fk506-binding protein; PDBTitle: structure of the large fkbp-like protein, fkbp51, involved in steroid2 receptor complexes 39 d1q1ca2 not modelled 99.6 22 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 40 d1kt1a3 not modelled 99.5 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 41 c3b7xA_ not modelled 99.5 29 PDB header:isomerase Chain: A: PDB Molecule:fk506-binding protein 6; PDBTitle: crystal structure of human fk506-binding protein 6 42 d1t11a3 not modelled 99.5 20 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 43 d1w26a3 not modelled 99.4 23 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 44 d1kt1a2 not modelled 99.4 28 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 45 c2if4A_ not modelled 99.4 18 PDB header:signaling protein Chain: A: PDB Molecule:atfkbp42; PDBTitle: crystal structure of a multi-domain immunophilin from2 arabidopsis thaliana 46 c1qz2B_ not modelled 99.2 22 PDB header:isomerase/chaperone Chain: B: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of fkbp52 c-terminal domain complex with2 the c-terminal peptide meevd of hsp90 47 c1w26B_ not modelled 99.1 24 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 48 c1t11A_ not modelled 99.1 22 PDB header:chaperone Chain: A: PDB Molecule:trigger factor; PDBTitle: trigger factor 49 c3gtyX_ not modelled 98.6 20 PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone 50 c3htxA_ not modelled 96.9 23 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1 51 c2e6zA_ not modelled 77.9 17 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 52 d1vhka1 not modelled 58.3 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 53 d1nxza1 not modelled 56.2 16 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 54 d1qfha1 not modelled 47.2 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 55 d2g50a1 not modelled 45.8 13 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 56 d1pkma1 not modelled 44.4 15 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 57 c3fm3B_ not modelled 39.2 22 PDB header:hydrolase Chain: B: PDB Molecule:methionine aminopeptidase 2; PDBTitle: crystal structure of an encephalitozoon cuniculi methionine2 aminopeptidase type 2 58 c1b6aA_ not modelled 36.1 6 PDB header:angiogenesis inhibitor Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: human methionine aminopeptidase 2 complexed with tnp-470 59 c2jvvA_ not modelled 31.2 12 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 60 c2kvqG_ not modelled 31.2 12 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 61 c2khjA_ not modelled 30.1 12 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 62 c2v6cA_ not modelled 29.8 24 PDB header:transcription regulator Chain: A: PDB Molecule:proliferation-associated protein 2g4; PDBTitle: crystal structure of erbb3 binding protein 1 (ebp1) 63 c1qfhB_ not modelled 29.7 18 PDB header:actin binding protein Chain: B: PDB Molecule:protein (gelation factor); PDBTitle: dimerization of gelation factor from dictyostelium2 discoideum: crystal structure of rod domains 5 and 6 64 c1yw7A_ not modelled 29.7 5 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 2; PDBTitle: h-metap2 complexed with a444148 65 d1liua1 not modelled 29.5 13 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 66 c3s6bA_ not modelled 26.4 16 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: crystal structure of methionine aminopeptidase 1b from plasmodium2 falciparum, pf10_0150 67 c2p4vA_ not modelled 25.4 21 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution 68 c2ds4A_ not modelled 24.7 13 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 45; PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45 69 d1nz9a_ not modelled 24.4 14 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 70 d2etna2 not modelled 23.8 32 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 71 d2f23a2 not modelled 22.8 32 Fold:FKBP-like Superfamily:FKBP-like Family:GreA transcript cleavage factor, C-terminal domain 72 c3besR_ not modelled 21.1 22 PDB header:immune system Chain: R: PDB Molecule:interferon-gamma binding protein c4r; PDBTitle: structure of a poxvirus ifngbp/ifng complex 73 c2q8kA_ not modelled 20.8 22 PDB header:transcription Chain: A: PDB Molecule:proliferation-associated protein 2g4; PDBTitle: the crystal structure of ebp1 74 c3pxpA_ not modelled 20.4 18 PDB header:transcription regulator Chain: A: PDB Molecule:helix-turn-helix domain protein; PDBTitle: crystal structure of a pas and dna binding domain containing protein2 (caur_2278) from chloroflexus aurantiacus j-10-fl at 2.30 a3 resolution 75 d1fw8a_ not modelled 18.8 53 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 76 c2etnA_ not modelled 18.7 32 PDB header:transcription Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor PDBTitle: crystal structure of thermus aquaticus gfh1 77 d2hi6a1 not modelled 18.3 21 Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:AF0055-like 78 c2equA_ not modelled 18.1 25 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 79 d1kk1a2 not modelled 17.5 16 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 80 c1vhkA_ not modelled 16.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 81 c3qiiA_ not modelled 16.7 29 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 82 d1s0ua2 not modelled 16.4 18 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 83 d1pkla1 not modelled 16.3 11 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 84 c2g6pA_ not modelled 16.3 30 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 1; PDBTitle: crystal structure of truncated (delta 1-89) human methionine2 aminopeptidase type 1 in complex with pyridyl pyrimidine derivative 85 c2gz5A_ not modelled 16.3 30 PDB header:hydrolase Chain: A: PDB Molecule:methionine aminopeptidase 1; PDBTitle: human type 1 methionine aminopeptidase in complex with ovalicin at 1.12 ang 86 d1oz2a3 not modelled 15.7 5 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 87 d1f00i1 not modelled 15.7 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Invasin/intimin cell-adhesion fragments Family:Invasin/intimin cell-adhesion fragments 88 c1xezA_ not modelled 15.4 24 PDB header:toxin Chain: A: PDB Molecule:hemolysin; PDBTitle: crystal structure of the vibrio cholerae cytolysin (hlya)2 pro-toxin with octylglucoside bound 89 c3k2yD_ not modelled 14.7 10 PDB header:nucleotide binding protein Chain: D: PDB Molecule:uncharacterized protein lp_0118; PDBTitle: crystal structure of protein lp_0118 from lactobacillus2 plantarum,northeast structural genomics consortium target3 lpr91b 90 c2jz2A_ not modelled 14.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ssl0352 protein; PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42 91 d1c8za_ not modelled 14.6 18 Fold:Tubby C-terminal domain-like Superfamily:Tubby C-terminal domain-like Family:Transcriptional factor tubby, C-terminal domain 92 d1wjsa_ not modelled 14.5 13 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 93 d1jnsa_ not modelled 14.1 9 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 94 d2qn6a2 not modelled 13.9 18 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 95 c1xgnB_ not modelled 13.7 16 PDB header:aminopeptidase Chain: B: PDB Molecule:methionine aminopeptidase; PDBTitle: methionine aminopeptidase from hyperthermophile pyrococcus2 furiosus 96 c3bmbB_ not modelled 13.4 11 PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein 97 d1ea9c2 not modelled 13.4 31 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 98 d2do3a1 not modelled 13.4 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 99 d1je3a_ not modelled 13.4 20 Fold:IF3-like Superfamily:SirA-like Family:SirA-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0