14/01/2012 04:55:17 : INFO  : Run start: Sat Jan 14 04:55:17 GMT 2012
14/01/2012 04:55:20 : INFO  : Initialised job
14/01/2012 04:55:20 : INFO  : Renaming log file 'phyre2_20120114_045517.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/e1231fc65f6ae64f/phyre_20120114_045517.log'
14/01/2012 04:55:21 : INFO  : Initialised job:
Sequence
>batch____
MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQT
IARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIE
RAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAINAGATTINIPDTVGYTMPFEF
AGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCS
LEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIH
QDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGRAAVKHRMDEMGYKESEYNLDNLYDAF
LKLADKKGQVFDYDLEALAFIGKQQEEPEHFRLDYFSVQSGSNDIATAAVKLACGEEVKA
EAANGNGPVDAVYQAINRITEYNVELVKYSLTAKGHGKDALGQVDIVANYNGRRFHGVGL
ATDIVESSAKAMVHVLNNIWRAAEVEKELQRKAQHNENNKETV

14/01/2012 04:55:21 : INFO  : Checked sequence
14/01/2012 04:55:23 : INFO  : Finding homologues with PSI-BLAST
14/01/2012 04:55:23 : INFO  : PSI-BLAST 3 iterations
14/01/2012 04:57:32 : INFO  : PSI-BLAST 5 iterations
14/01/2012 04:59:40 : INFO  : Finished PSI-BLAST
14/01/2012 04:59:41 : INFO  : Running Buildali to generate a3m file
14/01/2012 05:07:54 : INFO  : Converting to HMM
14/01/2012 05:08:01 : INFO  : Calibrating HMM
14/01/2012 05:08:15 : INFO  : Searching HMM database
14/01/2012 05:17:07 : INFO  : Finished buildali
14/01/2012 05:17:08 : INFO  : Predicting secondary structure
14/01/2012 05:17:12 : INFO  : Predicted secondary structure (PSI-Pred)
14/01/2012 05:17:13 : INFO  : Predicting Disordered regions
14/01/2012 05:17:15 : INFO  : Predicted Disorder (Disopred)
14/01/2012 05:17:16 : INFO  : Running memsat_svm check
14/01/2012 05:19:06 : INFO  : Running memsat_svm full
14/01/2012 05:24:45 : INFO  : Predicted Transmembrane (memsat_svm) ID 'e1231fc65f6ae64f'
14/01/2012 05:24:46 : INFO  : Initialising fold library search
14/01/2012 05:24:47 : INFO  : Initialised search input
14/01/2012 05:24:48 : INFO  : Building Ensemble models
14/01/2012 05:24:50 : INFO  : Building hh.c1sr9A_.model.1.pdb
14/01/2012 05:24:58 : INFO  : Building c1sr9A_.1.pdb
14/01/2012 05:25:07 : INFO  : Building c3ivuB_.2.pdb
14/01/2012 05:25:15 : INFO  : Building c3hpxB_.3.pdb
14/01/2012 05:25:23 : INFO  : Building c2zyfA_.4.pdb
14/01/2012 05:25:31 : INFO  : Building c3bleA_.5.pdb
14/01/2012 05:25:39 : INFO  : Building d1sr9a2.6.pdb
14/01/2012 05:25:47 : INFO  : Building c1nvmG_.7.pdb
14/01/2012 05:25:56 : INFO  : Building c2ftpA_.8.pdb
14/01/2012 05:26:06 : INFO  : Building c1ydoC_.9.pdb
14/01/2012 05:26:14 : INFO  : Building c3ewbX_.10.pdb
14/01/2012 05:26:22 : INFO  : Building c3eegB_.11.pdb
14/01/2012 05:26:31 : INFO  : Building c2cw6B_.12.pdb
14/01/2012 05:26:41 : INFO  : Building c3bg5C_.13.pdb
14/01/2012 05:26:50 : INFO  : Building d1nvma2.14.pdb
14/01/2012 05:27:00 : INFO  : Building d1rqba2.15.pdb
14/01/2012 05:27:11 : INFO  : Building c1rr2A_.16.pdb
14/01/2012 05:27:20 : INFO  : Building c1ydnA_.17.pdb
14/01/2012 05:27:30 : INFO  : Building c2nx9B_.18.pdb
14/01/2012 05:27:42 : INFO  : Building c3dxiB_.19.pdb
14/01/2012 05:27:52 : INFO  : Building c3bg3B_.20.pdb
14/01/2012 05:28:16 : INFO  : Finished HH model building
14/01/2012 05:28:17 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
14/01/2012 05:29:06 : INFO  : html domain output complete ID 'e1231fc65f6ae64f'
14/01/2012 07:54:04 : INFO  : Run end  : Sat Jan 14 07:54:03 GMT 2012
