 |
| Job Description | P77295 | | Confidence | 87.62% | Date | Wed Jan 25 15:21:10 GMT 2012 |
| Rank | 413 | Aligned Residues | 34 |
| % Identity | 24% | Template | c1jumB_ |
| PDB info |
PDB header:transcription | Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca |
PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine
|
| Resolution | 2.98 Å |
|
|   |   |
25 | . | . | . | . | 30 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
K | R | L | L | I | L | C | M | L | S | G | . |
. |
. |
. |
. |
. |
S | P | G | T | S | A | G | E | L | T | R | I | T | G | L | S | A | S | A | T | S | Q | H |
| Query Conservation |   |
  |
|   |   |
|
|   |   |
|   |   | . | . | . | . | . | . |   |   |   |   |
|   |   |
|
|
|   |   |
|   |
|
|   |   |
|
|
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|   |   |
|
|   |
|
|   |   |
|
|   |   |   |
|   |   |   |   |
|
|   |   |
|
|   |   |
|
|
|
|   |   |
|   |
|   |   |
| Template Sequence |   |
L | K | D | K | I | L | G | V | A | K | E | L | F | I | K | N | G | Y | N | A | T | T | T | G | E | I | V | K | L | S | E | S | S | K | G | N | L | Y | Y | H |
| Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| T | T | T | S |
|  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|