BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (131 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B7NG91 Fumarate reductase subunit C n=133 Tax=Bacteria ... 260 1e-68 UniRef50_A7FMZ5 Fumarate reductase subunit C n=62 Tax=Gammaprote... 198 5e-50 UniRef50_Q7MGX5 Fumarate reductase subunit C n=66 Tax=Gammaprote... 114 1e-24 UniRef50_C4LAB1 Fumarate reductase subunit C n=1 Tax=Tolumonas a... 111 5e-24 UniRef50_A0KN50 Fumarate reductase subunit C n=4 Tax=Gammaproteo... 107 2e-22 UniRef50_Q1ZHT4 Putative fumarate reductase n=1 Tax=Psychromonas... 98 9e-20 UniRef50_A5EXV8 Fumarate reductase, subunit C n=2 Tax=Cardiobact... 84 2e-15 UniRef50_Q65RZ9 FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ... 81 1e-14 UniRef50_C7RPL8 Fumarate reductase subunit C n=2 Tax=Betaproteob... 74 1e-12 UniRef50_A5U2R1 Fumarate reductase subunit C n=116 Tax=Bacteria ... 58 8e-08 UniRef50_B8EKD0 Fumarate reductase, subunit C n=2 Tax=Rhizobiale... 54 1e-06 UniRef50_A1WX03 Fumarate reductase, 15 kDa hydrophobic protein n... 51 1e-05 >UniRef50_B7NG91 Fumarate reductase subunit C n=133 Tax=Bacteria RepID=FRDC_ECOLU Length = 131 Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/131 (99%), Positives = 131/131 (100%) Query: 1 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF 60 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPE+WAGF Sbjct: 1 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPESWAGF 60 Query: 61 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA Sbjct: 61 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120 Query: 121 TIVILFVALYW 131 TIVILFVALYW Sbjct: 121 TIVILFVALYW 131 >UniRef50_A7FMZ5 Fumarate reductase subunit C n=62 Tax=Gammaproteobacteria RepID=FRDC_YERP3 Length = 130 Score = 198 bits (503), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 93/129 (72%), Positives = 111/129 (86%) Query: 1 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF 60 MTTKRK YVR M WW++L FYRFYMLREGT++PAVWFS+ LI+G+FALK+GP W GF Sbjct: 1 MTTKRKAYVRTMAPNWWQQLGFYRFYMLREGTSIPAVWFSVLLIYGVFALKSGPAGWEGF 60 Query: 61 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120 V FLQNP+++ +N++TL AALLHTKTWFELAPKA NIIVK EKMGPEP+IK+LW VTVVA Sbjct: 61 VSFLQNPLVLFLNILTLFAALLHTKTWFELAPKAVNIIVKSEKMGPEPMIKALWVVTVVA 120 Query: 121 TIVILFVAL 129 + +IL VAL Sbjct: 121 SAIILAVAL 129 >UniRef50_Q7MGX5 Fumarate reductase subunit C n=66 Tax=Gammaproteobacteria RepID=FRDC_VIBVY Length = 127 Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 81/125 (64%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 + RKPYVR + TWWK PFYRFYMLRE T +P + F++ L GL +L GPEAW +++ Sbjct: 2 SNRKPYVREVKRTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKGPEAWQTWLN 61 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 F+ NPV++ IN++ L +LLH T+F + P+ I +K + + + I+ + WA ++ Sbjct: 62 FMANPVVIAINIVALLGSLLHAHTFFSMMPQVMPIRLKGKPVDKKIIVLAQWAAVAFISL 121 Query: 123 VILFV 127 ++L V Sbjct: 122 IVLIV 126 >UniRef50_C4LAB1 Fumarate reductase subunit C n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LAB1_TOLAT Length = 134 Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 81/127 (63%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 +KRKPYVR + +WW + FY YMLREGT + +++ L+ GL L GPEA+AG++ Sbjct: 6 SKRKPYVRQVKKSWWLRNSFYTGYMLREGTCIFVGAYAVVLLCGLLRLTQGPEAFAGWLT 65 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 LQ+P+ ++ +L+ L A L H KTWF LAPKA I +E + +PII + + ++ Sbjct: 66 ALQSPLAIVFHLLALVACLFHAKTWFSLAPKAVRIFKGEELLPEKPIIMAQYIGLAAVSV 125 Query: 123 VILFVAL 129 ++L +A+ Sbjct: 126 IVLLIAV 132 >UniRef50_A0KN50 Fumarate reductase subunit C n=4 Tax=Gammaproteobacteria RepID=A0KN50_AERHH Length = 132 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/128 (42%), Positives = 85/128 (66%), Gaps = 1/128 (0%) Query: 2 TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFV 61 +KRKPYVR M WW K FY YM+REGT++ +++ L++GL L G EA+ G++ Sbjct: 5 NSKRKPYVREMKKDWWLKNAFYTGYMIREGTSIFVSIYAVVLMWGLLRLVQGQEAFNGWL 64 Query: 62 DFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLW-AVTVVA 120 + LQ+P+ ++ ++I LAA L H KTWF LAPKA I ++ + +PI+ + + A+ VV+ Sbjct: 65 ESLQSPIAILFHVIALAACLFHAKTWFALAPKAMRIFRGEDLVPEKPIVIAQYVALAVVS 124 Query: 121 TIVILFVA 128 +V++ VA Sbjct: 125 LLVLIIVA 132 >UniRef50_Q1ZHT4 Putative fumarate reductase n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHT4_9GAMM Length = 129 Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 48/125 (38%), Positives = 76/125 (60%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 +KRKPY + + WW K FY YMLREG++V ++S+ L +GL L A+ ++D Sbjct: 2 SKRKPYTYQIETNWWLKSRFYTMYMLREGSSVFITFYSLVLTWGLLCLSRSEAAFNSWLD 61 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 LQNP+ + ++LI L AL H+ TWF LAPKA + +K ++ I+ + +A VV ++ Sbjct: 62 TLQNPLFIALHLIVLIFALYHSITWFALAPKAMALWIKGRRLEDNVIVATHYAAFVVISV 121 Query: 123 VILFV 127 + L + Sbjct: 122 LCLLL 126 >UniRef50_A5EXV8 Fumarate reductase, subunit C n=2 Tax=Cardiobacteriaceae RepID=A5EXV8_DICNV Length = 130 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 77/129 (59%), Gaps = 4/129 (3%) Query: 4 KRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDF 63 R+PY R + W+ FYR+YMLRE T++ + ++ L +GL AL + E+W +++ Sbjct: 2 NRQPYQRQQSKFWYLSSRFYRWYMLRELTSLTTAFAALNLFWGLAALASSLESWQCWLNA 61 Query: 64 LQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLW----AVTVV 119 ++ ++ +NLI +A +LL++KTWFE PKA I + + E ++K W +V V+ Sbjct: 62 QKSTFMITLNLIAIAGSLLNSKTWFEAMPKAVRIPKGNGFVAAETLVKGSWIAFGSVFVI 121 Query: 120 ATIVILFVA 128 ++I+ +A Sbjct: 122 LCLIIIMLA 130 >UniRef50_Q65RZ9 FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ9_MANSM Length = 129 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/68 (51%), Positives = 46/68 (67%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 +KR YVR +T TWWK FY+FYMLRE +A+P VWF + L++G+F L F+ Sbjct: 5 SKRNKYVREVTPTWWKSWSFYKFYMLRESSAIPTVWFCLVLLYGVFCLTTANGFVEKFIP 64 Query: 63 FLQNPVIV 70 FLQNPV+V Sbjct: 65 FLQNPVVV 72 >UniRef50_C7RPL8 Fumarate reductase subunit C n=2 Tax=Betaproteobacteria RepID=C7RPL8_9PROT Length = 132 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 9/116 (7%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 KR+PYVR M WWKK PF+ YM+ E TA+ ++ L+FGL L G AW ++ Sbjct: 2 NKRRPYVRSMDG-WWKKNPFFVEYMIHEATALFVAAYAGILLFGLLRLSQGEAAWNEWLM 60 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAA-NIIVKDEKMGPEPIIKSLWAVT 117 L+NP + +L+ L A HT TWF++ P+ +IV +++ S WA+T Sbjct: 61 ALKNPWYIGFHLLALVAISYHTYTWFKIMPRTMPPVIVGGQRL-------SAWAIT 109 >UniRef50_A5U2R1 Fumarate reductase subunit C n=116 Tax=Bacteria RepID=FRDC_MYCTA Length = 126 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 70/124 (56%) Query: 6 KPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQ 65 Y +P+ WW + Y +MLRE + + WF + L+ L A+ G ++ F+DF Sbjct: 2 SAYRQPVERYWWARRRSYLRFMLREISCIFVAWFVLYLMLVLRAVGAGGNSYQRFLDFSA 61 Query: 66 NPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVIL 125 NPV+V++N++ L+ LLH TWF AP+A I V+ ++ ++ +A +V ++++ Sbjct: 62 NPVVVVLNVVALSFLLLHAVTWFGSAPRAMVIQVRGRRVPARAVLAGHYAAWLVVSVIVA 121 Query: 126 FVAL 129 ++ L Sbjct: 122 WMVL 125 >UniRef50_B8EKD0 Fumarate reductase, subunit C n=2 Tax=Rhizobiales RepID=B8EKD0_METSB Length = 134 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 1/126 (0%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 + +P+ RP S WW P YR Y +RE V + L+ G+ L GP+A+ + Sbjct: 2 NESRPFHRPRPSRWWAHKP-YRAYTIRELCGVAVAVYGAILLAGVVCLWRGPDAYDAYRR 60 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 L +P ++ +L+ LAA L H TWF++ PK +V ++ P+ ++ ++ A Sbjct: 61 ALASPWSLLAHLLLLAAVLWHVVTWFQILPKTMPKLVLRGRLVPQRLLSAVTLSIACACS 120 Query: 123 VILFVA 128 V L V Sbjct: 121 VALLVG 126 >UniRef50_A1WX03 Fumarate reductase, 15 kDa hydrophobic protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX03_HALHL Length = 132 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 5/127 (3%) Query: 6 KPYV-RPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFL 64 +P+ RP WW++ P YR Y+LREG++V ++I L+ G+ L G A+ G+ Sbjct: 3 RPHAYRPTMRGWWQRHPAYRRYLLREGSSVLLALYAIWLLIGVLCLAAGEAAYEGWRALH 62 Query: 65 QNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSL-WAVTVVATIV 123 +P + ++L L AA+ H TWF L P ++ G P + L W V++ ++ Sbjct: 63 GHPWLFGLHLAALLAAIFHAVTWFRLLPLTLPVL---RWRGYRPTDRMLVWGGWVLSAVL 119 Query: 124 ILFVALY 130 V LY Sbjct: 120 SGGVCLY 126 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7NG91 Fumarate reductase subunit C n=133 Tax=Bacteria ... 156 2e-37 UniRef50_C4LAB1 Fumarate reductase subunit C n=1 Tax=Tolumonas a... 144 8e-34 UniRef50_A0KN50 Fumarate reductase subunit C n=4 Tax=Gammaproteo... 143 1e-33 UniRef50_A7FMZ5 Fumarate reductase subunit C n=62 Tax=Gammaprote... 140 2e-32 UniRef50_Q7MGX5 Fumarate reductase subunit C n=66 Tax=Gammaprote... 133 2e-30 UniRef50_Q1ZHT4 Putative fumarate reductase n=1 Tax=Psychromonas... 131 9e-30 UniRef50_A5EXV8 Fumarate reductase, subunit C n=2 Tax=Cardiobact... 116 2e-25 UniRef50_C7RPL8 Fumarate reductase subunit C n=2 Tax=Betaproteob... 105 5e-22 UniRef50_B8EKD0 Fumarate reductase, subunit C n=2 Tax=Rhizobiale... 103 2e-21 UniRef50_A5U2R1 Fumarate reductase subunit C n=116 Tax=Bacteria ... 99 4e-20 UniRef50_A1WX03 Fumarate reductase, 15 kDa hydrophobic protein n... 90 2e-17 UniRef50_Q65RZ9 FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ... 84 1e-15 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_B7NG91 Fumarate reductase subunit C n=133 Tax=Bacteria RepID=FRDC_ECOLU Length = 131 Score = 156 bits (394), Expect = 2e-37, Method: Composition-based stats. Identities = 130/131 (99%), Positives = 131/131 (100%) Query: 1 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF 60 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPE+WAGF Sbjct: 1 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPESWAGF 60 Query: 61 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA Sbjct: 61 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120 Query: 121 TIVILFVALYW 131 TIVILFVALYW Sbjct: 121 TIVILFVALYW 131 >UniRef50_C4LAB1 Fumarate reductase subunit C n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LAB1_TOLAT Length = 134 Score = 144 bits (363), Expect = 8e-34, Method: Composition-based stats. Identities = 52/127 (40%), Positives = 81/127 (63%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 +KRKPYVR + +WW + FY YMLREGT + +++ L+ GL L GPEA+AG++ Sbjct: 6 SKRKPYVRQVKKSWWLRNSFYTGYMLREGTCIFVGAYAVVLLCGLLRLTQGPEAFAGWLT 65 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 LQ+P+ ++ +L+ L A L H KTWF LAPKA I +E + +PII + + ++ Sbjct: 66 ALQSPLAIVFHLLALVACLFHAKTWFSLAPKAVRIFKGEELLPEKPIIMAQYIGLAAVSV 125 Query: 123 VILFVAL 129 ++L +A+ Sbjct: 126 IVLLIAV 132 >UniRef50_A0KN50 Fumarate reductase subunit C n=4 Tax=Gammaproteobacteria RepID=A0KN50_AERHH Length = 132 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 50/127 (39%), Positives = 81/127 (63%) Query: 2 TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFV 61 +KRKPYVR M WW K FY YM+REGT++ +++ L++GL L G EA+ G++ Sbjct: 5 NSKRKPYVREMKKDWWLKNAFYTGYMIREGTSIFVSIYAVVLMWGLLRLVQGQEAFNGWL 64 Query: 62 DFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVAT 121 + LQ+P+ ++ ++I LAA L H KTWF LAPKA I ++ + +PI+ + + V + Sbjct: 65 ESLQSPIAILFHVIALAACLFHAKTWFALAPKAMRIFRGEDLVPEKPIVIAQYVALAVVS 124 Query: 122 IVILFVA 128 +++L + Sbjct: 125 LLVLIIV 131 >UniRef50_A7FMZ5 Fumarate reductase subunit C n=62 Tax=Gammaproteobacteria RepID=FRDC_YERP3 Length = 130 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 93/129 (72%), Positives = 111/129 (86%) Query: 1 MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF 60 MTTKRK YVR M WW++L FYRFYMLREGT++PAVWFS+ LI+G+FALK+GP W GF Sbjct: 1 MTTKRKAYVRTMAPNWWQQLGFYRFYMLREGTSIPAVWFSVLLIYGVFALKSGPAGWEGF 60 Query: 61 VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120 V FLQNP+++ +N++TL AALLHTKTWFELAPKA NIIVK EKMGPEP+IK+LW VTVVA Sbjct: 61 VSFLQNPLVLFLNILTLFAALLHTKTWFELAPKAVNIIVKSEKMGPEPMIKALWVVTVVA 120 Query: 121 TIVILFVAL 129 + +IL VAL Sbjct: 121 SAIILAVAL 129 >UniRef50_Q7MGX5 Fumarate reductase subunit C n=66 Tax=Gammaproteobacteria RepID=FRDC_VIBVY Length = 127 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 52/126 (41%), Positives = 81/126 (64%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 + RKPYVR + TWWK PFYRFYMLRE T +P + F++ L GL +L GPEAW +++ Sbjct: 2 SNRKPYVREVKRTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKGPEAWQTWLN 61 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 F+ NPV++ IN++ L +LLH T+F + P+ I +K + + + I+ + WA ++ Sbjct: 62 FMANPVVIAINIVALLGSLLHAHTFFSMMPQVMPIRLKGKPVDKKIIVLAQWAAVAFISL 121 Query: 123 VILFVA 128 ++L V Sbjct: 122 IVLIVV 127 >UniRef50_Q1ZHT4 Putative fumarate reductase n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHT4_9GAMM Length = 129 Score = 131 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 76/125 (60%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 +KRKPY + + WW K FY YMLREG++V ++S+ L +GL L A+ ++D Sbjct: 2 SKRKPYTYQIETNWWLKSRFYTMYMLREGSSVFITFYSLVLTWGLLCLSRSEAAFNSWLD 61 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 LQNP+ + ++LI L AL H+ TWF LAPKA + +K ++ I+ + +A VV ++ Sbjct: 62 TLQNPLFIALHLIVLIFALYHSITWFALAPKAMALWIKGRRLEDNVIVATHYAAFVVISV 121 Query: 123 VILFV 127 + L + Sbjct: 122 LCLLL 126 >UniRef50_A5EXV8 Fumarate reductase, subunit C n=2 Tax=Cardiobacteriaceae RepID=A5EXV8_DICNV Length = 130 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 77/129 (59%), Gaps = 4/129 (3%) Query: 4 KRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDF 63 R+PY R + W+ FYR+YMLRE T++ + ++ L +GL AL + E+W +++ Sbjct: 2 NRQPYQRQQSKFWYLSSRFYRWYMLRELTSLTTAFAALNLFWGLAALASSLESWQCWLNA 61 Query: 64 LQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLW----AVTVV 119 ++ ++ +NLI +A +LL++KTWFE PKA I + + E ++K W +V V+ Sbjct: 62 QKSTFMITLNLIAIAGSLLNSKTWFEAMPKAVRIPKGNGFVAAETLVKGSWIAFGSVFVI 121 Query: 120 ATIVILFVA 128 ++I+ +A Sbjct: 122 LCLIIIMLA 130 >UniRef50_C7RPL8 Fumarate reductase subunit C n=2 Tax=Betaproteobacteria RepID=C7RPL8_9PROT Length = 132 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 2/108 (1%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 KR+PYVR M WWKK PF+ YM+ E TA+ ++ L+FGL L G AW ++ Sbjct: 2 NKRRPYVRSMD-GWWKKNPFFVEYMIHEATALFVAAYAGILLFGLLRLSQGEAAWNEWLM 60 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAA-NIIVKDEKMGPEPI 109 L+NP + +L+ L A HT TWF++ P+ +IV +++ I Sbjct: 61 ALKNPWYIGFHLLALVAISYHTYTWFKIMPRTMPPVIVGGQRLSAWAI 108 >UniRef50_B8EKD0 Fumarate reductase, subunit C n=2 Tax=Rhizobiales RepID=B8EKD0_METSB Length = 134 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 1/126 (0%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 + +P+ RP S WW P YR Y +RE V + L+ G+ L GP+A+ + Sbjct: 2 NESRPFHRPRPSRWWAHKP-YRAYTIRELCGVAVAVYGAILLAGVVCLWRGPDAYDAYRR 60 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 L +P ++ +L+ LAA L H TWF++ PK +V ++ P+ ++ ++ A Sbjct: 61 ALASPWSLLAHLLLLAAVLWHVVTWFQILPKTMPKLVLRGRLVPQRLLSAVTLSIACACS 120 Query: 123 VILFVA 128 V L V Sbjct: 121 VALLVG 126 >UniRef50_A5U2R1 Fumarate reductase subunit C n=116 Tax=Bacteria RepID=FRDC_MYCTA Length = 126 Score = 98.9 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 70/124 (56%) Query: 6 KPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQ 65 Y +P+ WW + Y +MLRE + + WF + L+ L A+ G ++ F+DF Sbjct: 2 SAYRQPVERYWWARRRSYLRFMLREISCIFVAWFVLYLMLVLRAVGAGGNSYQRFLDFSA 61 Query: 66 NPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVIL 125 NPV+V++N++ L+ LLH TWF AP+A I V+ ++ ++ +A +V ++++ Sbjct: 62 NPVVVVLNVVALSFLLLHAVTWFGSAPRAMVIQVRGRRVPARAVLAGHYAAWLVVSVIVA 121 Query: 126 FVAL 129 ++ L Sbjct: 122 WMVL 125 >UniRef50_A1WX03 Fumarate reductase, 15 kDa hydrophobic protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX03_HALHL Length = 132 Score = 90.1 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 10 RPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVI 69 RP WW++ P YR Y+LREG++V ++I L+ G+ L G A+ G+ +P + Sbjct: 8 RPTMRGWWQRHPAYRRYLLREGSSVLLALYAIWLLIGVLCLAAGEAAYEGWRALHGHPWL 67 Query: 70 VIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVAL 129 ++L L AA+ H TWF L P ++ + ++ +W V++ ++ V L Sbjct: 68 FGLHLAALLAAIFHAVTWFRLLPLTLPVLRWRGYRPTDRML--VWGGWVLSAVLSGGVCL 125 Query: 130 Y 130 Y Sbjct: 126 Y 126 >UniRef50_Q65RZ9 FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ9_MANSM Length = 129 Score = 84.3 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 51/125 (40%), Positives = 78/125 (62%) Query: 3 TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62 +KR YVR +T TWWK FY+FYMLRE +A+P VWF + L++G+F L F+ Sbjct: 5 SKRNKYVREVTPTWWKSWSFYKFYMLRESSAIPTVWFCLVLLYGVFCLTTANGFVEKFIP 64 Query: 63 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122 FLQNPV+VI+NLI+LA LLH T F++ + + + + + +K L+A+ V + Sbjct: 65 FLQNPVVVILNLISLALLLLHAFTLFQMTGEVMSGSLGLKSEVIQKALKVLFAIVTVVAL 124 Query: 123 VILFV 127 V++ + Sbjct: 125 VLVCI 129 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.323 0.141 0.439 Lambda K H 0.267 0.0429 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 545,068,696 Number of Sequences: 3077464 Number of extensions: 20554526 Number of successful extensions: 79160 Number of sequences better than 1.0e-01: 25 Number of HSP's better than 0.1 without gapping: 25 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 79126 Number of HSP's gapped (non-prelim): 39 length of query: 131 length of database: 1,040,396,356 effective HSP length: 96 effective length of query: 35 effective length of database: 744,959,812 effective search space: 26073593420 effective search space used: 26073593420 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.1 bits)