BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (131 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_B7NG91 Fumarate reductase subunit C n=133 Tax=Bacteria ...   260   1e-68
UniRef50_A7FMZ5 Fumarate reductase subunit C n=62 Tax=Gammaprote...   198   5e-50
UniRef50_Q7MGX5 Fumarate reductase subunit C n=66 Tax=Gammaprote...   114   1e-24
UniRef50_C4LAB1 Fumarate reductase subunit C n=1 Tax=Tolumonas a...   111   5e-24
UniRef50_A0KN50 Fumarate reductase subunit C n=4 Tax=Gammaproteo...   107   2e-22
UniRef50_Q1ZHT4 Putative fumarate reductase n=1 Tax=Psychromonas...    98   9e-20
UniRef50_A5EXV8 Fumarate reductase, subunit C n=2 Tax=Cardiobact...    84   2e-15
UniRef50_Q65RZ9 FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ...    81   1e-14
UniRef50_C7RPL8 Fumarate reductase subunit C n=2 Tax=Betaproteob...    74   1e-12
UniRef50_A5U2R1 Fumarate reductase subunit C n=116 Tax=Bacteria ...    58   8e-08
UniRef50_B8EKD0 Fumarate reductase, subunit C n=2 Tax=Rhizobiale...    54   1e-06
UniRef50_A1WX03 Fumarate reductase, 15 kDa hydrophobic protein n...    51   1e-05

>UniRef50_B7NG91 Fumarate reductase subunit C n=133 Tax=Bacteria RepID=FRDC_ECOLU
          Length = 131

 Score =  260 bits (664), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/131 (99%), Positives = 131/131 (100%)

Query: 1   MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF 60
           MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPE+WAGF
Sbjct: 1   MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPESWAGF 60

Query: 61  VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120
           VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA
Sbjct: 61  VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120

Query: 121 TIVILFVALYW 131
           TIVILFVALYW
Sbjct: 121 TIVILFVALYW 131


>UniRef50_A7FMZ5 Fumarate reductase subunit C n=62 Tax=Gammaproteobacteria
           RepID=FRDC_YERP3
          Length = 130

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 111/129 (86%)

Query: 1   MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF 60
           MTTKRK YVR M   WW++L FYRFYMLREGT++PAVWFS+ LI+G+FALK+GP  W GF
Sbjct: 1   MTTKRKAYVRTMAPNWWQQLGFYRFYMLREGTSIPAVWFSVLLIYGVFALKSGPAGWEGF 60

Query: 61  VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120
           V FLQNP+++ +N++TL AALLHTKTWFELAPKA NIIVK EKMGPEP+IK+LW VTVVA
Sbjct: 61  VSFLQNPLVLFLNILTLFAALLHTKTWFELAPKAVNIIVKSEKMGPEPMIKALWVVTVVA 120

Query: 121 TIVILFVAL 129
           + +IL VAL
Sbjct: 121 SAIILAVAL 129


>UniRef50_Q7MGX5 Fumarate reductase subunit C n=66 Tax=Gammaproteobacteria
           RepID=FRDC_VIBVY
          Length = 127

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 81/125 (64%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
           + RKPYVR +  TWWK  PFYRFYMLRE T +P + F++ L  GL +L  GPEAW  +++
Sbjct: 2   SNRKPYVREVKRTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKGPEAWQTWLN 61

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
           F+ NPV++ IN++ L  +LLH  T+F + P+   I +K + +  + I+ + WA     ++
Sbjct: 62  FMANPVVIAINIVALLGSLLHAHTFFSMMPQVMPIRLKGKPVDKKIIVLAQWAAVAFISL 121

Query: 123 VILFV 127
           ++L V
Sbjct: 122 IVLIV 126


>UniRef50_C4LAB1 Fumarate reductase subunit C n=1 Tax=Tolumonas auensis DSM 9187
           RepID=C4LAB1_TOLAT
          Length = 134

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 81/127 (63%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
           +KRKPYVR +  +WW +  FY  YMLREGT +    +++ L+ GL  L  GPEA+AG++ 
Sbjct: 6   SKRKPYVRQVKKSWWLRNSFYTGYMLREGTCIFVGAYAVVLLCGLLRLTQGPEAFAGWLT 65

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
            LQ+P+ ++ +L+ L A L H KTWF LAPKA  I   +E +  +PII + +      ++
Sbjct: 66  ALQSPLAIVFHLLALVACLFHAKTWFSLAPKAVRIFKGEELLPEKPIIMAQYIGLAAVSV 125

Query: 123 VILFVAL 129
           ++L +A+
Sbjct: 126 IVLLIAV 132


>UniRef50_A0KN50 Fumarate reductase subunit C n=4 Tax=Gammaproteobacteria
           RepID=A0KN50_AERHH
          Length = 132

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 85/128 (66%), Gaps = 1/128 (0%)

Query: 2   TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFV 61
            +KRKPYVR M   WW K  FY  YM+REGT++    +++ L++GL  L  G EA+ G++
Sbjct: 5   NSKRKPYVREMKKDWWLKNAFYTGYMIREGTSIFVSIYAVVLMWGLLRLVQGQEAFNGWL 64

Query: 62  DFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLW-AVTVVA 120
           + LQ+P+ ++ ++I LAA L H KTWF LAPKA  I   ++ +  +PI+ + + A+ VV+
Sbjct: 65  ESLQSPIAILFHVIALAACLFHAKTWFALAPKAMRIFRGEDLVPEKPIVIAQYVALAVVS 124

Query: 121 TIVILFVA 128
            +V++ VA
Sbjct: 125 LLVLIIVA 132


>UniRef50_Q1ZHT4 Putative fumarate reductase n=1 Tax=Psychromonas sp. CNPT3
           RepID=Q1ZHT4_9GAMM
          Length = 129

 Score = 97.8 bits (242), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 76/125 (60%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
           +KRKPY   + + WW K  FY  YMLREG++V   ++S+ L +GL  L     A+  ++D
Sbjct: 2   SKRKPYTYQIETNWWLKSRFYTMYMLREGSSVFITFYSLVLTWGLLCLSRSEAAFNSWLD 61

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
            LQNP+ + ++LI L  AL H+ TWF LAPKA  + +K  ++    I+ + +A  VV ++
Sbjct: 62  TLQNPLFIALHLIVLIFALYHSITWFALAPKAMALWIKGRRLEDNVIVATHYAAFVVISV 121

Query: 123 VILFV 127
           + L +
Sbjct: 122 LCLLL 126


>UniRef50_A5EXV8 Fumarate reductase, subunit C n=2 Tax=Cardiobacteriaceae
           RepID=A5EXV8_DICNV
          Length = 130

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 77/129 (59%), Gaps = 4/129 (3%)

Query: 4   KRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDF 63
            R+PY R  +  W+    FYR+YMLRE T++   + ++ L +GL AL +  E+W  +++ 
Sbjct: 2   NRQPYQRQQSKFWYLSSRFYRWYMLRELTSLTTAFAALNLFWGLAALASSLESWQCWLNA 61

Query: 64  LQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLW----AVTVV 119
            ++  ++ +NLI +A +LL++KTWFE  PKA  I   +  +  E ++K  W    +V V+
Sbjct: 62  QKSTFMITLNLIAIAGSLLNSKTWFEAMPKAVRIPKGNGFVAAETLVKGSWIAFGSVFVI 121

Query: 120 ATIVILFVA 128
             ++I+ +A
Sbjct: 122 LCLIIIMLA 130


>UniRef50_Q65RZ9 FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ9_MANSM
          Length = 129

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query: 3  TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
          +KR  YVR +T TWWK   FY+FYMLRE +A+P VWF + L++G+F L         F+ 
Sbjct: 5  SKRNKYVREVTPTWWKSWSFYKFYMLRESSAIPTVWFCLVLLYGVFCLTTANGFVEKFIP 64

Query: 63 FLQNPVIV 70
          FLQNPV+V
Sbjct: 65 FLQNPVVV 72


>UniRef50_C7RPL8 Fumarate reductase subunit C n=2 Tax=Betaproteobacteria
           RepID=C7RPL8_9PROT
          Length = 132

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 9/116 (7%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
            KR+PYVR M   WWKK PF+  YM+ E TA+    ++  L+FGL  L  G  AW  ++ 
Sbjct: 2   NKRRPYVRSMDG-WWKKNPFFVEYMIHEATALFVAAYAGILLFGLLRLSQGEAAWNEWLM 60

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAA-NIIVKDEKMGPEPIIKSLWAVT 117
            L+NP  +  +L+ L A   HT TWF++ P+    +IV  +++       S WA+T
Sbjct: 61  ALKNPWYIGFHLLALVAISYHTYTWFKIMPRTMPPVIVGGQRL-------SAWAIT 109


>UniRef50_A5U2R1 Fumarate reductase subunit C n=116 Tax=Bacteria RepID=FRDC_MYCTA
          Length = 126

 Score = 58.2 bits (139), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 70/124 (56%)

Query: 6   KPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQ 65
             Y +P+   WW +   Y  +MLRE + +   WF + L+  L A+  G  ++  F+DF  
Sbjct: 2   SAYRQPVERYWWARRRSYLRFMLREISCIFVAWFVLYLMLVLRAVGAGGNSYQRFLDFSA 61

Query: 66  NPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVIL 125
           NPV+V++N++ L+  LLH  TWF  AP+A  I V+  ++    ++   +A  +V ++++ 
Sbjct: 62  NPVVVVLNVVALSFLLLHAVTWFGSAPRAMVIQVRGRRVPARAVLAGHYAAWLVVSVIVA 121

Query: 126 FVAL 129
           ++ L
Sbjct: 122 WMVL 125


>UniRef50_B8EKD0 Fumarate reductase, subunit C n=2 Tax=Rhizobiales
           RepID=B8EKD0_METSB
          Length = 134

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
            + +P+ RP  S WW   P YR Y +RE   V    +   L+ G+  L  GP+A+  +  
Sbjct: 2   NESRPFHRPRPSRWWAHKP-YRAYTIRELCGVAVAVYGAILLAGVVCLWRGPDAYDAYRR 60

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
            L +P  ++ +L+ LAA L H  TWF++ PK    +V   ++ P+ ++ ++      A  
Sbjct: 61  ALASPWSLLAHLLLLAAVLWHVVTWFQILPKTMPKLVLRGRLVPQRLLSAVTLSIACACS 120

Query: 123 VILFVA 128
           V L V 
Sbjct: 121 VALLVG 126


>UniRef50_A1WX03 Fumarate reductase, 15 kDa hydrophobic protein n=1
           Tax=Halorhodospira halophila SL1 RepID=A1WX03_HALHL
          Length = 132

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 5/127 (3%)

Query: 6   KPYV-RPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFL 64
           +P+  RP    WW++ P YR Y+LREG++V    ++I L+ G+  L  G  A+ G+    
Sbjct: 3   RPHAYRPTMRGWWQRHPAYRRYLLREGSSVLLALYAIWLLIGVLCLAAGEAAYEGWRALH 62

Query: 65  QNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSL-WAVTVVATIV 123
            +P +  ++L  L AA+ H  TWF L P    ++      G  P  + L W   V++ ++
Sbjct: 63  GHPWLFGLHLAALLAAIFHAVTWFRLLPLTLPVL---RWRGYRPTDRMLVWGGWVLSAVL 119

Query: 124 ILFVALY 130
              V LY
Sbjct: 120 SGGVCLY 126


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_B7NG91 Fumarate reductase subunit C n=133 Tax=Bacteria ...   156   2e-37
UniRef50_C4LAB1 Fumarate reductase subunit C n=1 Tax=Tolumonas a...   144   8e-34
UniRef50_A0KN50 Fumarate reductase subunit C n=4 Tax=Gammaproteo...   143   1e-33
UniRef50_A7FMZ5 Fumarate reductase subunit C n=62 Tax=Gammaprote...   140   2e-32
UniRef50_Q7MGX5 Fumarate reductase subunit C n=66 Tax=Gammaprote...   133   2e-30
UniRef50_Q1ZHT4 Putative fumarate reductase n=1 Tax=Psychromonas...   131   9e-30
UniRef50_A5EXV8 Fumarate reductase, subunit C n=2 Tax=Cardiobact...   116   2e-25
UniRef50_C7RPL8 Fumarate reductase subunit C n=2 Tax=Betaproteob...   105   5e-22
UniRef50_B8EKD0 Fumarate reductase, subunit C n=2 Tax=Rhizobiale...   103   2e-21
UniRef50_A5U2R1 Fumarate reductase subunit C n=116 Tax=Bacteria ...    99   4e-20
UniRef50_A1WX03 Fumarate reductase, 15 kDa hydrophobic protein n...    90   2e-17
UniRef50_Q65RZ9 FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ...    84   1e-15

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_B7NG91 Fumarate reductase subunit C n=133 Tax=Bacteria RepID=FRDC_ECOLU
          Length = 131

 Score =  156 bits (394), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 130/131 (99%), Positives = 131/131 (100%)

Query: 1   MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF 60
           MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPE+WAGF
Sbjct: 1   MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPESWAGF 60

Query: 61  VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120
           VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA
Sbjct: 61  VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120

Query: 121 TIVILFVALYW 131
           TIVILFVALYW
Sbjct: 121 TIVILFVALYW 131


>UniRef50_C4LAB1 Fumarate reductase subunit C n=1 Tax=Tolumonas auensis DSM 9187
           RepID=C4LAB1_TOLAT
          Length = 134

 Score =  144 bits (363), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 81/127 (63%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
           +KRKPYVR +  +WW +  FY  YMLREGT +    +++ L+ GL  L  GPEA+AG++ 
Sbjct: 6   SKRKPYVRQVKKSWWLRNSFYTGYMLREGTCIFVGAYAVVLLCGLLRLTQGPEAFAGWLT 65

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
            LQ+P+ ++ +L+ L A L H KTWF LAPKA  I   +E +  +PII + +      ++
Sbjct: 66  ALQSPLAIVFHLLALVACLFHAKTWFSLAPKAVRIFKGEELLPEKPIIMAQYIGLAAVSV 125

Query: 123 VILFVAL 129
           ++L +A+
Sbjct: 126 IVLLIAV 132


>UniRef50_A0KN50 Fumarate reductase subunit C n=4 Tax=Gammaproteobacteria
           RepID=A0KN50_AERHH
          Length = 132

 Score =  143 bits (362), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/127 (39%), Positives = 81/127 (63%)

Query: 2   TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFV 61
            +KRKPYVR M   WW K  FY  YM+REGT++    +++ L++GL  L  G EA+ G++
Sbjct: 5   NSKRKPYVREMKKDWWLKNAFYTGYMIREGTSIFVSIYAVVLMWGLLRLVQGQEAFNGWL 64

Query: 62  DFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVAT 121
           + LQ+P+ ++ ++I LAA L H KTWF LAPKA  I   ++ +  +PI+ + +    V +
Sbjct: 65  ESLQSPIAILFHVIALAACLFHAKTWFALAPKAMRIFRGEDLVPEKPIVIAQYVALAVVS 124

Query: 122 IVILFVA 128
           +++L + 
Sbjct: 125 LLVLIIV 131


>UniRef50_A7FMZ5 Fumarate reductase subunit C n=62 Tax=Gammaproteobacteria
           RepID=FRDC_YERP3
          Length = 130

 Score =  140 bits (352), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/129 (72%), Positives = 111/129 (86%)

Query: 1   MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGF 60
           MTTKRK YVR M   WW++L FYRFYMLREGT++PAVWFS+ LI+G+FALK+GP  W GF
Sbjct: 1   MTTKRKAYVRTMAPNWWQQLGFYRFYMLREGTSIPAVWFSVLLIYGVFALKSGPAGWEGF 60

Query: 61  VDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVA 120
           V FLQNP+++ +N++TL AALLHTKTWFELAPKA NIIVK EKMGPEP+IK+LW VTVVA
Sbjct: 61  VSFLQNPLVLFLNILTLFAALLHTKTWFELAPKAVNIIVKSEKMGPEPMIKALWVVTVVA 120

Query: 121 TIVILFVAL 129
           + +IL VAL
Sbjct: 121 SAIILAVAL 129


>UniRef50_Q7MGX5 Fumarate reductase subunit C n=66 Tax=Gammaproteobacteria
           RepID=FRDC_VIBVY
          Length = 127

 Score =  133 bits (335), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/126 (41%), Positives = 81/126 (64%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
           + RKPYVR +  TWWK  PFYRFYMLRE T +P + F++ L  GL +L  GPEAW  +++
Sbjct: 2   SNRKPYVREVKRTWWKDHPFYRFYMLREATVLPLILFTLFLTVGLGSLVKGPEAWQTWLN 61

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
           F+ NPV++ IN++ L  +LLH  T+F + P+   I +K + +  + I+ + WA     ++
Sbjct: 62  FMANPVVIAINIVALLGSLLHAHTFFSMMPQVMPIRLKGKPVDKKIIVLAQWAAVAFISL 121

Query: 123 VILFVA 128
           ++L V 
Sbjct: 122 IVLIVV 127


>UniRef50_Q1ZHT4 Putative fumarate reductase n=1 Tax=Psychromonas sp. CNPT3
           RepID=Q1ZHT4_9GAMM
          Length = 129

 Score =  131 bits (329), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/125 (38%), Positives = 76/125 (60%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
           +KRKPY   + + WW K  FY  YMLREG++V   ++S+ L +GL  L     A+  ++D
Sbjct: 2   SKRKPYTYQIETNWWLKSRFYTMYMLREGSSVFITFYSLVLTWGLLCLSRSEAAFNSWLD 61

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
            LQNP+ + ++LI L  AL H+ TWF LAPKA  + +K  ++    I+ + +A  VV ++
Sbjct: 62  TLQNPLFIALHLIVLIFALYHSITWFALAPKAMALWIKGRRLEDNVIVATHYAAFVVISV 121

Query: 123 VILFV 127
           + L +
Sbjct: 122 LCLLL 126


>UniRef50_A5EXV8 Fumarate reductase, subunit C n=2 Tax=Cardiobacteriaceae
           RepID=A5EXV8_DICNV
          Length = 130

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/129 (33%), Positives = 77/129 (59%), Gaps = 4/129 (3%)

Query: 4   KRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDF 63
            R+PY R  +  W+    FYR+YMLRE T++   + ++ L +GL AL +  E+W  +++ 
Sbjct: 2   NRQPYQRQQSKFWYLSSRFYRWYMLRELTSLTTAFAALNLFWGLAALASSLESWQCWLNA 61

Query: 64  LQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLW----AVTVV 119
            ++  ++ +NLI +A +LL++KTWFE  PKA  I   +  +  E ++K  W    +V V+
Sbjct: 62  QKSTFMITLNLIAIAGSLLNSKTWFEAMPKAVRIPKGNGFVAAETLVKGSWIAFGSVFVI 121

Query: 120 ATIVILFVA 128
             ++I+ +A
Sbjct: 122 LCLIIIMLA 130


>UniRef50_C7RPL8 Fumarate reductase subunit C n=2 Tax=Betaproteobacteria
           RepID=C7RPL8_9PROT
          Length = 132

 Score =  105 bits (262), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
            KR+PYVR M   WWKK PF+  YM+ E TA+    ++  L+FGL  L  G  AW  ++ 
Sbjct: 2   NKRRPYVRSMD-GWWKKNPFFVEYMIHEATALFVAAYAGILLFGLLRLSQGEAAWNEWLM 60

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAA-NIIVKDEKMGPEPI 109
            L+NP  +  +L+ L A   HT TWF++ P+    +IV  +++    I
Sbjct: 61  ALKNPWYIGFHLLALVAISYHTYTWFKIMPRTMPPVIVGGQRLSAWAI 108


>UniRef50_B8EKD0 Fumarate reductase, subunit C n=2 Tax=Rhizobiales
           RepID=B8EKD0_METSB
          Length = 134

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 1/126 (0%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
            + +P+ RP  S WW   P YR Y +RE   V    +   L+ G+  L  GP+A+  +  
Sbjct: 2   NESRPFHRPRPSRWWAHKP-YRAYTIRELCGVAVAVYGAILLAGVVCLWRGPDAYDAYRR 60

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
            L +P  ++ +L+ LAA L H  TWF++ PK    +V   ++ P+ ++ ++      A  
Sbjct: 61  ALASPWSLLAHLLLLAAVLWHVVTWFQILPKTMPKLVLRGRLVPQRLLSAVTLSIACACS 120

Query: 123 VILFVA 128
           V L V 
Sbjct: 121 VALLVG 126


>UniRef50_A5U2R1 Fumarate reductase subunit C n=116 Tax=Bacteria RepID=FRDC_MYCTA
          Length = 126

 Score = 98.9 bits (245), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 70/124 (56%)

Query: 6   KPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQ 65
             Y +P+   WW +   Y  +MLRE + +   WF + L+  L A+  G  ++  F+DF  
Sbjct: 2   SAYRQPVERYWWARRRSYLRFMLREISCIFVAWFVLYLMLVLRAVGAGGNSYQRFLDFSA 61

Query: 66  NPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVIL 125
           NPV+V++N++ L+  LLH  TWF  AP+A  I V+  ++    ++   +A  +V ++++ 
Sbjct: 62  NPVVVVLNVVALSFLLLHAVTWFGSAPRAMVIQVRGRRVPARAVLAGHYAAWLVVSVIVA 121

Query: 126 FVAL 129
           ++ L
Sbjct: 122 WMVL 125


>UniRef50_A1WX03 Fumarate reductase, 15 kDa hydrophobic protein n=1
           Tax=Halorhodospira halophila SL1 RepID=A1WX03_HALHL
          Length = 132

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 10  RPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVI 69
           RP    WW++ P YR Y+LREG++V    ++I L+ G+  L  G  A+ G+     +P +
Sbjct: 8   RPTMRGWWQRHPAYRRYLLREGSSVLLALYAIWLLIGVLCLAAGEAAYEGWRALHGHPWL 67

Query: 70  VIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVAL 129
             ++L  L AA+ H  TWF L P    ++        + ++  +W   V++ ++   V L
Sbjct: 68  FGLHLAALLAAIFHAVTWFRLLPLTLPVLRWRGYRPTDRML--VWGGWVLSAVLSGGVCL 125

Query: 130 Y 130
           Y
Sbjct: 126 Y 126


>UniRef50_Q65RZ9 FrdC protein n=2 Tax=Pasteurellaceae RepID=Q65RZ9_MANSM
          Length = 129

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/125 (40%), Positives = 78/125 (62%)

Query: 3   TKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVD 62
           +KR  YVR +T TWWK   FY+FYMLRE +A+P VWF + L++G+F L         F+ 
Sbjct: 5   SKRNKYVREVTPTWWKSWSFYKFYMLRESSAIPTVWFCLVLLYGVFCLTTANGFVEKFIP 64

Query: 63  FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATI 122
           FLQNPV+VI+NLI+LA  LLH  T F++  +  +  +  +    +  +K L+A+  V  +
Sbjct: 65  FLQNPVVVILNLISLALLLLHAFTLFQMTGEVMSGSLGLKSEVIQKALKVLFAIVTVVAL 124

Query: 123 VILFV 127
           V++ +
Sbjct: 125 VLVCI 129


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.323    0.141    0.439 

Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,068,696
Number of Sequences: 3077464
Number of extensions: 20554526
Number of successful extensions: 79160
Number of sequences better than 1.0e-01: 25
Number of HSP's better than  0.1 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 79126
Number of HSP's gapped (non-prelim): 39
length of query: 131
length of database: 1,040,396,356
effective HSP length: 96
effective length of query: 35
effective length of database: 744,959,812
effective search space: 26073593420
effective search space used: 26073593420
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 87 (38.1 bits)
