28/01/2012 01:40:27 : INFO  : Run start: Sat Jan 28 01:40:27 GMT 2012
28/01/2012 01:40:29 : INFO  : Initialised job
28/01/2012 01:40:29 : INFO  : Renaming log file 'phyre2_20120128_014027.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/e0ec6181d2febf38/phyre_20120128_014027.log'
28/01/2012 01:40:29 : INFO  : Initialised job:
Sequence
>batch____
MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKG
LFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALP
AGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLE
SRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEG
GCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAR
EILAEVYNGDAPA

28/01/2012 01:40:30 : INFO  : Checked sequence
28/01/2012 01:40:30 : INFO  : Finding homologues with PSI-BLAST
28/01/2012 01:40:31 : INFO  : PSI-BLAST 3 iterations
28/01/2012 01:42:45 : INFO  : PSI-BLAST 5 iterations
28/01/2012 01:44:34 : INFO  : Finished PSI-BLAST
28/01/2012 01:44:34 : INFO  : Running Buildali to generate a3m file
28/01/2012 01:51:48 : INFO  : Converting to HMM
28/01/2012 01:51:49 : INFO  : Calibrating HMM
28/01/2012 01:52:01 : INFO  : Searching HMM database
28/01/2012 01:58:45 : INFO  : Finished buildali
28/01/2012 01:58:45 : INFO  : Predicting secondary structure
28/01/2012 01:58:47 : INFO  : Predicted secondary structure (PSI-Pred)
28/01/2012 01:58:48 : INFO  : Predicting Disordered regions
28/01/2012 01:58:49 : INFO  : Predicted Disorder (Disopred)
28/01/2012 01:58:50 : INFO  : Running memsat_svm check
28/01/2012 02:00:21 : INFO  : Running memsat_svm full
28/01/2012 02:06:03 : INFO  : Predicted Transmembrane (memsat_svm) ID 'e0ec6181d2febf38'
28/01/2012 02:06:03 : INFO  : Initialising fold library search
28/01/2012 02:06:05 : INFO  : Initialised search input
28/01/2012 02:06:05 : INFO  : Building Ensemble models
28/01/2012 02:06:06 : INFO  : Building hh.c2ypnA_.model.1.pdb
28/01/2012 02:06:11 : INFO  : Building c2ypnA_.1.pdb
28/01/2012 02:06:16 : INFO  : Building c3eq1A_.2.pdb
28/01/2012 02:06:21 : INFO  : Building d1pdaa1.3.pdb
28/01/2012 02:06:26 : INFO  : Building d1gtka2.4.pdb
28/01/2012 02:06:30 : INFO  : Building d1pdaa2.5.pdb
28/01/2012 02:06:35 : INFO  : Building c3gxaA_.6.pdb
28/01/2012 02:06:40 : INFO  : Building c2x26A_.7.pdb
28/01/2012 02:06:44 : INFO  : Building d1p99a_.8.pdb
28/01/2012 02:06:50 : INFO  : Building c1p99A_.9.pdb
28/01/2012 02:06:54 : INFO  : Building c3tqwA_.10.pdb
28/01/2012 02:06:59 : INFO  : Building c3uifA_.11.pdb
28/01/2012 02:07:05 : INFO  : Building c3ir1F_.12.pdb
28/01/2012 02:07:11 : INFO  : Building c3un6A_.13.pdb
28/01/2012 02:07:15 : INFO  : Building d1xs5a_.14.pdb
28/01/2012 02:07:20 : INFO  : Building c3e4rA_.15.pdb
28/01/2012 02:07:25 : INFO  : Building c3k2dA_.16.pdb
28/01/2012 02:07:29 : INFO  : Building c3l6gA_.17.pdb
28/01/2012 02:07:35 : INFO  : Building c3qslA_.18.pdb
28/01/2012 02:07:39 : INFO  : Building c3hn0A_.19.pdb
28/01/2012 02:07:45 : INFO  : Building c3tmgA_.20.pdb
28/01/2012 02:07:58 : INFO  : Finished HH model building
28/01/2012 02:07:58 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
28/01/2012 02:08:34 : INFO  : html domain output complete ID 'e0ec6181d2febf38'
28/01/2012 02:54:59 : INFO  : Run end  : Sat Jan 28 02:54:59 GMT 2012
