Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	Y	H	G	D	M	L	L	T	T	P	V	I	S	T	L	K	Q	N	Y	P	D	A	K	I	D	M	L	L	Y	Q	D	T	I	P	I	L	S	E	N	P	E	I	N	A	L	Y	G	I	S	N	K	G	A	G	T	F	D	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																																	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	K	N	V	L	S	L	I	K	T	L	R	A	N	N	Y	D	L	V	I	N	L	T	D	Q	W	M	V	A	L	L	V	R	C	L	P	A	R	M	K	I	S	Q	L	Y	G	H	R	Q	H	G	I	W	K	K	S	F	T	H	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	P	I	H	G	T	H	I	V	E	R	N	L	S	V	L	E	P	L	G	I	T	D	F	Y	T	D	T	T	M	S	Y	A	E	D	C	W	K	K	M	R	R	E	L	D	A	L	G	V	K	D	H	Y	V	V	I	Q	P	T	A
Secondary structure
SS confidence
Disorder		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	Q	I	F	K	C	W	D	N	D	K	F	S	K	V	I	D	A	L	Q	Q	R	G	Y	Q	V	V	L	T	C	G	P	S	A	D	D	L	A	C	V	D	E	I	A	R	G	C	E	T	K	P	I	T	G	L	A	G	K	T	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	P	E	L	G	A	L	I	D	H	A	V	L	F	I	G	V	D	S	A	P	G	H	I	A	A	A	V	K	T	P	V	I	S	L	F	G	A	T	D	H	V	F	W	R	P	W	T	E	N	I	I	Q	F	W	A	G	N	Y	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Sequence		K	M	P	T	R	H	E	L	D	R	N	K	K	Y	L	S	V	I	P	A	E	D	V	I	A	A	T	E	K	L	L	P	E	D	A	P	S	A	D	R	N	A	Q	L
Secondary structure
SS confidence
Disorder																																	?		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3tov chain B Region: 1 - 334 Aligned: 325 Modelled: 332 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 Phyre2 PDB 1psw chain A Region: 1 - 336 Aligned: 314 Modelled: 335 Confidence: 100.0% Identity: 24% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: ADP-heptose LPS heptosyltransferase II Phyre2 PDB 2h1f chain B Region: 1 - 335 Aligned: 292 Modelled: 313 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp Phyre2 PDB 1v4v chain A Region: 5 - 340 Aligned: 309 Modelled: 312 Confidence: 99.4% Identity: 13% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 3ot5 chain D Region: 5 - 341 Aligned: 312 Modelled: 314 Confidence: 99.3% Identity: 13% PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes Phyre2 PDB 1f6d chain A Region: 5 - 340 Aligned: 310 Modelled: 312 Confidence: 99.1% Identity: 11% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 1o6c chain A Region: 5 - 340 Aligned: 293 Modelled: 304 Confidence: 99.0% Identity: 13% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: UDP-N-acetylglucosamine 2-epimerase Phyre2 PDB 2xcu chain C Region: 3 - 335 Aligned: 286 Modelled: 299 Confidence: 98.7% Identity: 11% PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Phyre2 PDB 3dzc chain A Region: 5 - 343 Aligned: 315 Modelled: 315 Confidence: 98.6% Identity: 12% PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Phyre2 PDB 2gej chain A Region: 5 - 341 Aligned: 297 Modelled: 315 Confidence: 98.1% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man Phyre2 PDB 2xmp chain B Region: 5 - 343 Aligned: 311 Modelled: 316 Confidence: 98.1% Identity: 11% PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp Phyre2 PDB 3oy2 chain A Region: 64 - 335 Aligned: 265 Modelled: 272 Confidence: 98.0% Identity: 9% PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a Phyre2 PDB 2vsn chain B Region: 65 - 283 Aligned: 214 Modelled: 219 Confidence: 97.9% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation Phyre2 PDB 1pn3 chain A Region: 5 - 344 Aligned: 304 Modelled: 322 Confidence: 97.8% Identity: 16% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Gtf glycosyltransferase Phyre2 PDB 1f0k chain A Region: 5 - 343 Aligned: 302 Modelled: 320 Confidence: 97.7% Identity: 11% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Peptidoglycan biosynthesis glycosyltransferase MurG Phyre2 PDB 3c4v chain B Region: 5 - 341 Aligned: 308 Modelled: 316 Confidence: 97.7% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. Phyre2 PDB 3oka chain A Region: 5 - 341 Aligned: 306 Modelled: 315 Confidence: 97.7% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) Phyre2 PDB 2x6r chain A Region: 5 - 274 Aligned: 266 Modelled: 270 Confidence: 97.6% Identity: 11% PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose Phyre2 PDB 3oth chain B Region: 1 - 342 Aligned: 293 Modelled: 304 Confidence: 97.5% Identity: 16% PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form Phyre2 PDB 3q3h chain A Region: 66 - 285 Aligned: 207 Modelled: 209 Confidence: 97.3% Identity: 8% PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc Phyre2 1 c3tovB_ 2 d1pswa_ 3 c2h1fB_ 4 d1v4va_ 5 c3ot5D_ 6 d1f6da_ 7 d1o6ca_ 8 c2xcuC_ 9 c3dzcA_ 10 c2gejA_ 11 c2xmpB_ 12 c3oy2A_ 13 c2vsnB_ 14 d1pn3a_ 15 d1f0ka_ 16 c3c4vB_ 17 c3okaA_ 18 c2x6rA_ 19 c3othB_ 20 c3q3hA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3tovB_ 100.0 24 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 2 d1pswa_ 100.0 24 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 3 c2h1fB_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp 4 d1v4va_ 99.4 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 5 c3ot5D_ 99.3 13 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 6 d1f6da_ 99.1 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 7 d1o6ca_ 99.0 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 8 c2xcuC_ 98.7 11 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp 9 c3dzcA_ 98.6 12 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 10 c2gejA_ 98.1 12 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 11 c2xmpB_ 98.1 11 PDB header:sugar binding protein Chain: B: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp 12 c3oy2A_ 98.0 9 PDB header:viral protein,transferase Chain: A: PDB Molecule:glycosyltransferase b736l; PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a 13 c2vsnB_ 97.9 13 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 14 d1pn3a_ 97.8 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 15 d1f0ka_ 97.7 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 16 c3c4vB_ 97.7 13 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 17 c3okaA_ 97.7 11 PDB header:transferase Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form) 18 c2x6rA_ 97.6 11 PDB header:isomerase Chain: A: PDB Molecule:trehalose-synthase tret; PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose 19 c3othB_ 97.5 16 PDB header:transferase/antibiotic Chain: B: PDB Molecule:calg1; PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form 20 c3q3hA_ 97.3 8 PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc 21 c3iaaB_ not modelled 97.3 13 PDB header:transferase Chain: B: PDB Molecule:calg2; PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form 22 c3hbmA_ not modelled 97.3 13 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 23 c3pe3D_ not modelled 97.3 11 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 24 c2p6pB_ not modelled 97.2 12 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase; PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2 25 c2jjmH_ not modelled 97.1 10 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 26 c2x0dA_ not modelled 97.1 13 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 27 c2r60A_ not modelled 96.9 12 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 28 d1rrva_ not modelled 96.6 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 29 d1iira_ not modelled 96.5 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Gtf glycosyltransferase 30 d2f9fa1 not modelled 96.1 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 31 c2o6lA_ not modelled 96.0 14 PDB header:transferase Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7; PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7 32 d2iw1a1 not modelled 95.9 8 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 33 c3qhpB_ not modelled 95.9 13 PDB header:transferase Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori 34 c2iyfA_ not modelled 95.7 13 PDB header:transferase Chain: A: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 35 c1uquB_ not modelled 95.6 14 PDB header:synthase Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase; PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose. 36 d2bisa1 not modelled 95.4 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 37 d1uqta_ not modelled 93.7 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Trehalose-6-phosphate synthase, OtsA 38 c2q6vA_ not modelled 93.7 15 PDB header:transferase Chain: A: PDB Molecule:glucuronosyltransferase gumk; PDBTitle: crystal structure of gumk in complex with udp 39 c3hbjA_ not modelled 92.5 12 PDB header:transferase Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase; PDBTitle: structure of ugt78g1 complexed with udp 40 c2iyaB_ not modelled 92.3 13 PDB header:transferase Chain: B: PDB Molecule:oleandomycin glycosyltransferase; PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering 41 d2acva1 not modelled 92.3 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 42 c2khzB_ not modelled 92.0 22 PDB header:nuclear protein Chain: B: PDB Molecule:c-myc-responsive protein rcl; PDBTitle: solution structure of rcl 43 d2bfwa1 not modelled 91.8 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 44 c3ia7A_ not modelled 89.2 12 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 45 c3d0qB_ not modelled 89.0 13 PDB header:transferase Chain: B: PDB Molecule:protein calg3; PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222 46 c3ehdA_ not modelled 87.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of conserved protein from enterococcus faecalis v583 47 c2qzsA_ not modelled 87.8 9 PDB header:transferase Chain: A: PDB Molecule:glycogen synthase; PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb) 48 d2f62a1 not modelled 87.7 20 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 49 d2c1xa1 not modelled 86.4 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 50 d1f8ya_ not modelled 84.5 19 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 51 c3rhzB_ not modelled 81.9 16 PDB header:transferase Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein; PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions 52 d1s2da_ not modelled 81.6 26 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 53 d2pq6a1 not modelled 77.6 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 54 d1qh8a_ not modelled 73.8 10 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 55 d1rzua_ not modelled 71.1 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 56 d1m1na_ not modelled 69.9 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 57 c3cwcB_ not modelled 68.7 34 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 58 c3l7mC_ not modelled 68.1 9 PDB header:structural protein Chain: C: PDB Molecule:teichoic acid biosynthesis protein f; PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a 59 d2vcha1 not modelled 67.4 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 60 c2akmA_ not modelled 66.8 11 PDB header:lyase Chain: A: PDB Molecule:gamma enolase; PDBTitle: fluoride inhibition of enolase: crystal structure of the2 inhibitory complex 61 c3afoB_ not modelled 66.2 13 PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh 62 c2jzcA_ not modelled 64.3 13 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1 63 c2lcqA_ not modelled 63.1 14 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 64 c3pdiG_ not modelled 62.7 13 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 65 d1o94c_ not modelled 54.7 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 66 c2iz6A_ not modelled 54.7 12 PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein 67 c3s29C_ not modelled 54.5 11 PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. 68 c3gjzB_ not modelled 51.1 16 PDB header:immune system Chain: B: PDB Molecule:microcin immunity protein mccf; PDBTitle: crystal structure of microcin immunity protein mccf from bacillus2 anthracis str. ames 69 c3cf4G_ not modelled 47.4 11 PDB header:oxidoreductase Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 70 c2hlhA_ not modelled 47.1 10 PDB header:transferase Chain: A: PDB Molecule:nodulation fucosyltransferase; PDBTitle: crystal structure of fucosyltransferase nodz from bradyrhizobium 71 d2akza1 not modelled 44.9 11 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 72 d1to6a_ not modelled 41.7 23 Fold:Glycerate kinase I Superfamily:Glycerate kinase I Family:Glycerate kinase I 73 c3tqpA_ not modelled 39.4 15 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: structure of an enolase (eno) from coxiella burnetii 74 c2qv7A_ not modelled 38.0 15 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase dgkb; PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg 75 d1to0a_ not modelled 37.1 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 76 d1m1nb_ not modelled 34.2 20 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 77 c1l8pC_ not modelled 33.7 14 PDB header:lyase Chain: C: PDB Molecule:enolase 1; PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1 78 d2jgra1 not modelled 33.5 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 79 d2qv7a1 not modelled 33.0 14 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 80 c3fxaA_ not modelled 31.1 10 PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution 81 c3pfnB_ not modelled 29.8 15 PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase 82 d1zl0a2 not modelled 29.1 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 83 d1ylqa1 not modelled 28.7 13 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Catalytic subunit of bi-partite nucleotidyltransferase 84 c1ezaA_ not modelled 28.6 20 PDB header:phosphotransferase Chain: A: PDB Molecule:enzyme i; PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure 85 c2pa6A_ not modelled 27.5 13 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: crystal structure of mj0232 from methanococcus jannaschii 86 d1h6za2 not modelled 27.4 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 87 d1kbla2 not modelled 26.1 15 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain 88 d1geqa_ not modelled 25.6 19 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 89 c2an1D_ not modelled 25.5 16 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 90 d2bona1 not modelled 25.4 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 91 d1ybha1 not modelled 25.3 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 92 c3aerB_ not modelled 25.1 15 PDB header:oxidoreductase Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 93 c2w36B_ not modelled 25.0 17 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair 94 c1qgeD_ not modelled 25.0 13 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 95 d2ez9a1 not modelled 24.8 7 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 96 c3qn3B_ not modelled 24.5 15 PDB header:lyase Chain: B: PDB Molecule:enolase; PDBTitle: phosphopyruvate hydratase from campylobacter jejuni. 97 c3bzrA_ not modelled 24.1 29 PDB header:membrane protein, protein transport Chain: A: PDB Molecule:escu; PDBTitle: crystal structure of escu c-terminal domain with n262d mutation, space2 group p 41 21 2 98 d3bzra1 not modelled 24.1 29 Fold:EscU C-terminal domain-like Superfamily:EscU C-terminal domain-like Family:EscU C-terminal domain-like 99 d1zyma2 not modelled 23.8 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system 100 d1o6da_ not modelled 23.6 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 101 d1qh8b_ not modelled 23.6 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 102 d1z6na1 not modelled 23.6 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 103 d1pdza1 not modelled 23.3 11 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 104 c3kosA_ not modelled 23.0 17 PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii 105 d2p1ra1 not modelled 22.9 15 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 106 c2bonB_ not modelled 21.7 16 PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs) 107 d2h1qa1 not modelled 21.4 9 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 108 c1powA_ not modelled 21.0 7 PDB header:oxidoreductase(oxygen as acceptor) Chain: A: PDB Molecule:pyruvate oxidase; PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0