124 c3ogrA_ Probab=86.10   E-value=2.3  Score=21.25  Aligned_columns=130  Identities=12%

Q ss_pred             HCCCCCHHHHHHHHHHHCCCEEEEEC--CCCCCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEEECCCCC-----------
Q ss_conf             57898989999999980999899752--4642122325999899-999999998719848898546777-----------
Q batch____        13 LAKDLSWPERLVLAKSCGFDFVEMSV--DETDERLSRLDWSAAQ-RTSLVAAMIETGVGIPSMCLSAHR-----------   78 (286)
Q Consensus        13 l~~~l~~~~~~~~a~~~Gf~~iEl~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~gl~i~~~~~~~~~-----------   78 (286)
                      +|+.--|++.|+.+|++||+.|+.-+  ....+.....+++... +..+-+++++.||.+  +....++           
T Consensus        35 iP~pe~W~d~L~K~KA~G~N~V~tYv~Wn~HEp~~G~~dFsG~~DL~~Fi~la~e~GLyv--IlRpGPYicAE~~~GGlP  112 (986)
T c3ogrA_          35 LPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFSLEPFFEAATKAGIYL--LARPGPYINAEVSGGGFP  112 (986)
T ss_dssp             CCCGGGHHHHHHHHHHTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHHHHHHHHHHTCEE--EEEEESCCCTTBGGGGCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEE--EECCCCCEECCCCCCCCC
T ss_conf             886477399999999749979997504466567596784235054889999999949889--990798350113688842


Q ss_pred             ------CCCCCCCCHHHHHHHHHHHHHHHHHHHHH----CCCEEEECCCCCCCCCCC-----HHHHHHHHHHHHHHHHHH
Q ss_conf             ------78776799899999999999999997661----898999911558888980-----899999999999999874
Q batch____        79 ------RFPFGSRDEAVRERAREIMSKAIRLARDL----GIRTIQLAGYDVYYEDHD-----EGTRQRFAEGLAWAVEQA  143 (286)
Q Consensus        79 ------~~~~~~~d~~~r~~~~~~~~~~i~~a~~l----g~~~i~~~~g~~~~~~~~-----~~~~~~~~~~l~~~~~~a  143 (286)
                            ...+-+.|+.-.++....+.+..+..+.+    |.+.|.+-.=.-+.....     .      .+-|+.+.+.|
T Consensus       113 ~WL~~~~~~~Rs~dp~yl~~v~~~~~~i~~~i~~~~~t~GGPII~~QiENEYg~~~~~~~~~~------~~Ym~~L~~~a  186 (986)
T c3ogrA_         113 GWLQRVKGKLRTDAPDYLHATDNYVAHIASIIAKAQITNGGPVILYQPENEYSGAAEGVLFPN------KPYMQYVIDQA  186 (986)
T ss_dssp             GGGGGCCSCTTSCCHHHHHHHHHHHHHHHHHHHHTBGGGTSSEEEEEESSCCCCBCTTSCSSC------HHHHHHHHHHH
T ss_pred             HHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC------HHHHHHHHHHH
T ss_conf             677257964852898999999999999999988755417870999996415655556545680------89999999999


Q ss_pred             HHCCEEE
Q ss_conf             2132799
Q batch____       144 AASQVML  150 (286)
Q Consensus       144 ~~~gv~i  150 (286)
                      ++.|+.+
T Consensus       187 ~~~Gi~V  193 (986)
T c3ogrA_         187 RNAGIIV  193 (986)
T ss_dssp             HHTTCCS
T ss_pred             HHCCCCE
T ss_conf             9859937