BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (385 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV 790 0.0 UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX 390 e-107 UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria... 283 9e-75 UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111... 276 9e-73 UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enter... 274 5e-72 UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronos... 269 1e-70 UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadacea... 266 1e-69 UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovoran... 261 4e-68 UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomon... 261 4e-68 UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp... 256 1e-66 UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VM... 251 2e-65 UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4S... 249 9e-65 UniRef50_D0W4G5 Site-specific recombinase, phage integrase famil... 249 1e-64 UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomo... 248 2e-64 UniRef50_Q2T016 Site-specific recombinase, phage integrase famil... 248 3e-64 UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 Re... 244 3e-63 UniRef50_C0N6F7 Site-specific recombinase, phage integrase famil... 244 3e-63 UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio s... 244 5e-63 UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli R... 240 7e-62 UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacte... 240 8e-62 UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfo... 238 3e-61 UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae R... 236 8e-61 UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTA... 236 1e-60 UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella fer... 236 1e-60 UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio R... 235 2e-60 UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 234 4e-60 UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacter... 230 7e-59 UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola... 229 2e-58 UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae R... 226 9e-58 UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root Rep... 226 1e-57 UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria R... 226 1e-57 UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5... 225 2e-57 UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter ... 225 2e-57 UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=... 224 4e-57 UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalole... 224 4e-57 UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_A... 223 7e-57 UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria ... 222 2e-56 UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrop... 220 8e-56 UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea... 220 8e-56 UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_P... 219 9e-56 UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp.... 219 1e-55 UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobac... 219 1e-55 UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriace... 217 5e-55 UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochl... 217 5e-55 UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria Rep... 217 6e-55 UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Si... 217 7e-55 UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_S... 216 8e-55 UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepI... 216 1e-54 UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP13... 216 1e-54 UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. ... 214 5e-54 UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 214 6e-54 UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio... 213 8e-54 UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas inter... 213 1e-53 UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp... 212 2e-53 UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholde... 211 3e-53 UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteob... 209 1e-52 UniRef50_A6QCY9 Site-specific recombinase, phage integrase famil... 208 2e-52 UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholde... 208 2e-52 UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria Re... 208 3e-52 UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomo... 207 6e-52 UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium ... 206 8e-52 UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacte... 204 3e-51 UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, pha... 204 4e-51 UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophi... 204 6e-51 UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thio... 204 6e-51 UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillu... 204 6e-51 UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholde... 203 9e-51 UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonad... 203 1e-50 UniRef50_Q4K6S7 Site-specific recombinase, phage integrase famil... 202 2e-50 UniRef50_B6BKY5 DNA integration/recombination/inversion protein ... 201 3e-50 UniRef50_C8NCE3 Phage integrase family site-specific recombinase... 201 3e-50 UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 201 5e-50 UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BV... 200 6e-50 UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombina... 198 4e-49 UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enteroba... 197 6e-49 UniRef50_B4X5T7 Site-specific recombinase, phage integrase famil... 196 2e-48 UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepI... 195 2e-48 UniRef50_Q0C1T8 Site-specific recombinase, phage integrase famil... 194 3e-48 UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IG... 194 6e-48 UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria ... 194 6e-48 UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJ... 193 9e-48 UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobact... 193 1e-47 UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaprote... 192 1e-47 UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157... 192 2e-47 UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepI... 192 2e-47 UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Vermineph... 192 2e-47 UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingell... 191 3e-47 UniRef50_B9NUX0 Site-specific recombinase, phage integrase famil... 191 3e-47 UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix chol... 189 1e-46 UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillu... 189 2e-46 UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis ... 189 2e-46 UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio ... 189 2e-46 UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root Rep... 187 4e-46 UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobac... 187 5e-46 UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas flu... 187 6e-46 UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacte... 186 1e-45 UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion p... 186 1e-45 UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni C... 184 5e-45 UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID... 182 1e-44 UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammapro... 181 3e-44 UniRef50_A7H0X5 DNA integration/recombination/inversion protein ... 181 4e-44 UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales ... 181 4e-44 UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcu... 178 3e-43 UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphi... 178 3e-43 UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobac... 178 4e-43 UniRef50_B7I6Z3 Site-specific recombinase, phage integrase famil... 177 6e-43 UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZ... 177 6e-43 UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C... 177 7e-43 UniRef50_Q0BR52 DNA integration/recombination/inversion protein ... 176 1e-42 UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacte... 176 1e-42 UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 R... 176 1e-42 UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804... 174 4e-42 UniRef50_B9D1P3 DNA integration/recombination/inversion protein ... 171 6e-41 UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ... 171 6e-41 UniRef50_A4BQA0 Prophage CP4-like integrase n=1 Tax=Nitrococcus ... 170 7e-41 UniRef50_A4VPC8 Site-specific recombinase, phage integrase famil... 170 1e-40 UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteria... 169 1e-40 UniRef50_D0CDZ4 DNA integration/recombination/inversion protein ... 169 2e-40 UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butz... 169 2e-40 UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydroba... 167 5e-40 UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus p... 167 8e-40 UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO 167 8e-40 UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammapro... 166 1e-39 UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellacea... 166 1e-39 UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobac... 166 2e-39 UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetoba... 165 3e-39 UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria ... 165 3e-39 UniRef50_A6Q4N1 Site-specific recombinase, phage integrase famil... 164 4e-39 UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepI... 164 6e-39 UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID... 163 8e-39 UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia... 163 9e-39 UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophil... 163 1e-38 UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_... 162 2e-38 UniRef50_D1Y3S1 Site-specific recombinase, phage integrase famil... 162 3e-38 UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=... 161 3e-38 UniRef50_B8F737 Phage integrase family site specific recombinase... 160 5e-38 UniRef50_C9M6R5 Site-specific recombinase, phage integrase famil... 160 7e-38 UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresis... 157 4e-37 UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE4... 157 5e-37 UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein ... 155 2e-36 UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=... 155 2e-36 UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 ... 155 3e-36 UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromon... 154 4e-36 UniRef50_C8PFJ4 DNA integration/recombination/inversion protein ... 153 9e-36 UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3... 153 1e-35 UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integras... 150 6e-35 UniRef50_B6WTC3 Putative uncharacterized protein n=1 Tax=Desulfo... 150 1e-34 UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria ... 149 1e-34 UniRef50_UPI00016954D2 DNA integration/recombination/inversion p... 148 4e-34 UniRef50_C6UP78 Integrase n=13 Tax=Escherichia coli O157:H7 RepI... 147 5e-34 UniRef50_UPI00016B13C2 phage integrase family protein n=1 Tax=Bu... 147 6e-34 UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter... 147 7e-34 UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobact... 147 8e-34 UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family... 146 1e-33 UniRef50_A7H3V7 Putative site-specific recombinase, phage integr... 146 1e-33 UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumann... 145 2e-33 UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family... 145 3e-33 UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=... 144 4e-33 UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3... 144 8e-33 UniRef50_B5J5X2 Site-specific recombinase, phage integrase famil... 144 8e-33 UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 143 9e-33 UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella fer... 141 4e-32 UniRef50_C6V8W5 Integrase n=4 Tax=Enterobacteriaceae RepID=C6V8W... 140 9e-32 UniRef50_A7JZW2 Site-specific recombinase, phage integrase famil... 140 9e-32 UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatu... 137 5e-31 UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EV... 135 2e-30 UniRef50_B4WZP4 Site-specific recombinase, phage integrase famil... 134 5e-30 UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultu... 134 6e-30 UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM40... 134 6e-30 UniRef50_B9KC61 Site-specific recombinase, phage integrase famil... 133 1e-29 UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella Rep... 133 1e-29 UniRef50_A9MQQ9 Putative uncharacterized protein n=9 Tax=Salmone... 132 2e-29 UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU 132 2e-29 UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID... 132 3e-29 UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillu... 132 3e-29 UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family... 131 4e-29 UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=... 130 6e-29 UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crun... 130 8e-29 UniRef50_C5F036 30S ribosomal protein S15 n=3 Tax=Campylobactera... 130 9e-29 UniRef50_A5G0X3 Putative uncharacterized protein n=2 Tax=Acidiph... 130 1e-28 UniRef50_B5WB94 Integrase n=1 Tax=Burkholderia sp. H160 RepID=B5... 128 3e-28 UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphil... 127 6e-28 UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholde... 126 1e-27 UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium ... 125 2e-27 UniRef50_Q98MP8 Probable prophage integrase n=2 Tax=Proteobacter... 125 3e-27 UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae ... 125 3e-27 UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria Rep... 125 4e-27 UniRef50_A7I3A4 Putative prophage integrase n=1 Tax=Campylobacte... 124 6e-27 UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0... 124 6e-27 UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp... 124 7e-27 UniRef50_C8T7N5 Phage integrase family site-specific recombinase... 124 9e-27 UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaprot... 122 2e-26 UniRef50_A3UHH5 Site-specfic recombinase, phage integrase family... 120 7e-26 UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas put... 120 8e-26 UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter a... 120 8e-26 UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepI... 119 1e-25 UniRef50_B5J7B6 Site-specific recombinase, phage integrase famil... 119 2e-25 UniRef50_Q9RM38 Integrase (Fragment) n=56 Tax=Enterobacteriaceae... 119 3e-25 UniRef50_A0Q4W3 Phage integrase n=4 Tax=Francisella RepID=A0Q4W3... 118 5e-25 UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas inter... 117 6e-25 UniRef50_C7I2C4 Putative integrase n=1 Tax=Thiomonas intermedia ... 117 9e-25 UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurel... 116 1e-24 UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteur... 115 2e-24 UniRef50_A5WEP7 Phage integrase family protein n=1 Tax=Psychroba... 115 2e-24 UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=... 115 3e-24 UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria ... 114 5e-24 UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella si... 114 7e-24 UniRef50_C1TKN0 Putative uncharacterized protein n=1 Tax=Dethios... 113 1e-23 UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family... 113 1e-23 UniRef50_D2M358 Integrase family protein n=1 Tax=Rhodopseudomona... 112 3e-23 UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QA... 112 3e-23 UniRef50_UPI00019779C7 integrase n=1 Tax=Helicobacter cinaedi CC... 111 4e-23 UniRef50_B8J346 Putative phage integrase n=1 Tax=Desulfovibrio d... 111 6e-23 UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobac... 110 6e-23 UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepI... 110 7e-23 UniRef50_C3MF92 Phage integrase-like protein contains catalytic ... 110 1e-22 UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium ML... 110 1e-22 UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8... 109 2e-22 UniRef50_B5AXB8 Putative integrase n=1 Tax=Escherichia coli RepI... 108 2e-22 UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis ... 108 3e-22 UniRef50_B3R3M6 Prophage integrase n=4 Tax=Bacteria RepID=B3R3M6... 108 4e-22 UniRef50_Q7U5N5 Phage integrase family n=1 Tax=Synechococcus sp.... 108 5e-22 UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium ... 107 6e-22 UniRef50_A7MTK6 Putative uncharacterized protein n=1 Tax=Vibrio ... 107 7e-22 UniRef50_B8IIS8 Integrase family protein n=9 Tax=Alphaproteobact... 107 7e-22 UniRef50_B5J8B6 Site-specific recombinase, phage integrase famil... 106 1e-21 UniRef50_B0QT04 Prophage CP4-57-like integrase n=1 Tax=Haemophil... 106 2e-21 UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RK... 105 2e-21 UniRef50_A5F3U5 Site-specific recombinase, phage integrase famil... 105 2e-21 UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteri... 105 2e-21 UniRef50_A0RRJ7 Site-specific recombinase, phage integrase famil... 105 2e-21 UniRef50_Q0HZV2 Phage integrase family protein n=3 Tax=Gammaprot... 105 2e-21 UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus... 105 3e-21 UniRef50_A3JW30 Site-specfic recombinase, phage integrase family... 105 3e-21 UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria... 105 3e-21 UniRef50_Q1YTS1 Putative phage integrase n=1 Tax=gamma proteobac... 105 4e-21 UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter l... 104 4e-21 UniRef50_B2TTV9 Site-specific recombinase, phage integrase famil... 104 6e-21 UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12... 104 6e-21 UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobac... 103 8e-21 UniRef50_A5UG79 Prophage integrase n=1 Tax=Haemophilus influenza... 103 9e-21 UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanell... 103 1e-20 UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltic... 102 2e-20 UniRef50_D1ZVQ9 Whole genome shotgun sequence assembly, contig_3... 102 2e-20 UniRef50_B2U8E1 Integrase family protein n=9 Tax=Proteobacteria ... 102 2e-20 UniRef50_D1DCL4 Predicted protein n=8 Tax=Neisseria gonorrhoeae ... 102 2e-20 UniRef50_C3MAV8 DNA integration/recombination/invertion protein ... 102 3e-20 UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae... 102 3e-20 UniRef50_A5ELC2 Putative prophage integrase n=2 Tax=Bradyrhizobi... 102 3e-20 UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9... 101 4e-20 >UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV Length = 385 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/384 (99%), Positives = 383/384 (99%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL Sbjct: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWY+HKKQVWSVGYATELAKMF Sbjct: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYDHKKQVWSVGYATELAKMF 120 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN Sbjct: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 Query: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS Sbjct: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 Query: 241 MLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKK 300 M WKNVDFENRIITIDASVMKGRKIHVVPMSDQV+ELLTTLSSITKPVSEFVFAGRNDKK Sbjct: 241 MQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVIELLTTLSSITKPVSEFVFAGRNDKK 300 Query: 301 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY 360 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY Sbjct: 301 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY 360 Query: 361 NHAQYLDKRREMMQWWADWLDEKV 384 NHAQYLDKRREMMQWWADWLDEKV Sbjct: 361 NHAQYLDKRREMMQWWADWLDEKV 384 >UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX Length = 394 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/386 (48%), Positives = 269/386 (69%), Gaps = 7/386 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ AKPK+KPY+L DG G+YL + +G K W+++Y+ GKEK+L++G YP +TL Sbjct: 3 LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR+K ARK ++ G DP +AKK S N+F AI +EW++ K WS+ Y E Sbjct: 63 DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYRDE 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + F+ DI P IG I +I+PM+LLE +R+ E RGA+E+ K R+RCGEVFRYAIVTG Sbjct: 123 IIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA YNPAPDLA A+ +K +FPFL A+++P F LA ++GSI++ AT+++ T +RT Sbjct: 183 RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 +ELR W+++DFE ++ I A VMK ++ H+VP+S+QV+ L L I+K VF G Sbjct: 243 QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH-HPLVFIG 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 RND +KPI + ++ VI+ +GY+G +GHGFRH STI++E + + IE+QLAH + S Sbjct: 302 RNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLD 381 +RG YNHA YLD RREMMQW+AD++D Sbjct: 362 IRGTYNHALYLDGRREMMQWYADYID 387 >UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria RepID=A4JAY4_BURVG Length = 405 Score = 283 bits (723), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 143/372 (38%), Positives = 219/372 (58%), Gaps = 7/372 (1%) Query: 18 RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVG 77 +L DG GLYL + SG K W+L+Y+ +GKE +LT G YP +L +AR + A++ ++ G Sbjct: 23 KLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPATSLADARSRRDEAKRLLAEG 82 Query: 78 IDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGL 131 +P K +A + N+F A+ EWYE ++ WS +A + K D ++ P+IG Sbjct: 83 KNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATWSASHANRVKKQLDREVFPLIGQR 142 Query: 132 EIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKG 191 I I LL V+RR E R A E A K + CG+VFRYA+ T RA+ +P+PDL A+K Sbjct: 143 PISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVFRYAVATSRAERDPSPDLRGALKA 202 Query: 192 YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENR 251 K+ + ++P +++A++ G + +A + L T +RT ELR W +D E R Sbjct: 203 VPVKHMARVGESELPELLRSIASYEGEPETRLALRFLALTFVRTIELRQAEWTEIDLERR 262 Query: 252 IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLV 311 I A MK R++H+VP+++Q + LL+ L ++T ++F + + EN +L Sbjct: 263 EWRIPAEKMKMRRVHIVPLAEQAIALLSELRALTGH-RRWLFPNSRRPLQQMSENTILYA 321 Query: 312 IKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRRE 371 + ++GY +GHGFR STI+NE + +D IE QLAH+ VR YNHA+YL +R Sbjct: 322 LYRMGYRSRMTGHGFRGLASTILNEKGFNSDWIERQLAHSEQDGVRAAYNHAEYLSERHR 381 Query: 372 MMQWWADWLDEK 383 MMQWWAD+LD++ Sbjct: 382 MMQWWADYLDKQ 393 >UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UI65_ECO1A Length = 352 Score = 276 bits (706), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 136/273 (49%), Positives = 189/273 (69%), Gaps = 6/273 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +QI+ AKPKEK Y+L DG GLYL V +G K W+L+Y++ GKEK+L +G YP +TL Sbjct: 3 LNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAGKEKLLALGVYPEVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K A++ I+ GIDP++AK+ + NN+F I EW+ K + WS GYA++ Sbjct: 63 DARAKREDAKRGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYASD 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F+ D+ P IG I +I+P++LL V+RR E RGA E+A K R+RCGEVFRYAIVTG Sbjct: 123 ILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIVTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA+YNPAPDL AM+G+ ++PFL A ++P F KAL+++SGS + ++A ++L T LRT Sbjct: 183 RAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGLRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVV 268 ELR LW +DF I I AS MK R+ H+V Sbjct: 243 GELRGALWDEIDFNKAIWEIPASRMKMRRPHIV 275 >UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enterobacteriaceae RepID=INTZ_ECOLI Length = 402 Score = 274 bits (700), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 158/389 (40%), Positives = 238/389 (61%), Gaps = 14/389 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT K I+AA+P++KPY+L D GL+L V +G K W+ RY ++ +E + +G YPL+T Sbjct: 6 LTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLIT 65 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L+EAR +A +R I+ GI+PV KA A + F + ++W+ + WS YA Sbjct: 66 LKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESYA 125 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + D+ P++G I DI +L ++++ ++R A E+A K RRR GE+F++A++ Sbjct: 126 KQVRSALEKDVYPVLGKRSIVDITARDVLALLQK-KERTAPEQARKLRRRIGEIFKFAVI 184 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 T NP DL A+K R + ++P +IPAF KAL +GS+ A ++L TAL Sbjct: 185 TELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALER-AGSVQIQTAIRLLILTAL 243 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 RT ELR W+ ++ E+ IT+ A VMK R+ HVVP+S Q VELL + + S FVF Sbjct: 244 RTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSG-YSAFVF 302 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHAN 352 GR KP+ +A+L +++IGY+ + +GHG+R FST +NE + D IE+QLAH Sbjct: 303 PGRF-MDKPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVP 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLD 381 G +RG+YN A YL +RR MMQ +AD +D Sbjct: 362 KG-IRGVYNQAAYLKQRRAMMQDYADAID 389 >UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GR55_9DELT Length = 401 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 141/386 (36%), Positives = 229/386 (59%), Gaps = 7/386 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q++ KP YR+ D +G+YL V +G K+W+ +Y+ +GK K+L +GKYP ++L Sbjct: 3 LTDVQVKGLKPGSTKYRVKDKDGMYLEVTPAGGKLWRFKYRFNGKNKLLALGKYPDVSLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK--ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 +AR+K AR+ I+ G DP KK + N+F AI EW+ KK W+ G+A ++ + Sbjct: 63 KAREKLSIARQQIAEGKDPAYIKKIEKAEKENTFKAITDEWWRAKKSTWTPGHAEKVYRR 122 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + D+LP + I++I ++LEV+++ E RG + A + + C +F +A+ +GRA++ Sbjct: 123 LEIDVLPYLKDRPIKEITAREILEVLKKAEARGVTDTAYRLAQMCSNIFIFALASGRAEH 182 Query: 180 NPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 NPA D++ A+ + K N P + D+I A+ F+GS L A K+ +R EL Sbjct: 183 NPAADISKALTAHPKTNRPAITEPDEIKELLLAIDGFTGSYTVLCALKIAILVFVRPGEL 242 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W ++F+ + + + MK ++ H+VP+S Q V++L + +T +VF Sbjct: 243 RQASWAEINFDEALWYVPSQRMKMKREHLVPLSGQAVKILKDIHPLTG-AGHYVFPSIRT 301 Query: 299 KKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 +P+ EN + ++++GY E L HGFR ST ++E WP+D IE QLAH + + Sbjct: 302 NSRPMSENTLNAALRRLGYPQEKL-CAHGFRTMASTRLHEMGWPSDIIEFQLAHVDQNKI 360 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDE 382 RGIYN A+YLD+R +MMQ WAD+LD+ Sbjct: 361 RGIYNRAEYLDQRTKMMQAWADYLDD 386 >UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadaceae RepID=B1JDS4_PSEPW Length = 402 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I A+P++K YR+ D GL L V +G K+W+LRY+ +GK K+L +G YP +TL Sbjct: 3 LTDTAIRTARPRDKLYRIADAQGLCLEVTTAGGKLWRLRYRFEGKAKMLGLGTYPSVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN-----SFSAIYKEWYEHKKQVWSVGYATEL 116 AR++ ARK +S GIDP K+ + + +EWY++ + W+ A++ Sbjct: 63 HARERRDAARKLLSQGIDPSAYKQQEKAAAEAQALTLETLAREWYDYNQPRWAPATASKA 122 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + DI P+IG +++ +L++++R+ E R A A K R+ ++FR+ + G Sbjct: 123 LQYLESDIFPLIGKRPAAEVQRPELVDLVRKIEQREAFNVARKVRQWLSQIFRFGLAKGV 182 Query: 177 AKYNPAPDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NPA DL A R ++ P + ++P + L S IA ++L TA+R Sbjct: 183 VAGNPATDLDVVAAHAPRTRHHPHVSEAELPELLEKLEAAQCDFTSKIAIRLLLLTAVRP 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D E+ TI A+ MK R+ H+VP+ Q V LL L +T F G Sbjct: 243 GELRLAPWDEFDLESATWTIPAARMKARRPHIVPLPRQAVNLLRALHELTG-TYPLAFPG 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 RND+ +P+ EN V + +GYEG ++GHGFRH ST +N + D IE QLAH + S Sbjct: 302 RNDRSRPMSENTVNKALSTMGYEGRQTGHGFRHLLSTSLNTRGYNRDWIERQLAHGDQDS 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +R YNHA YL++RREMMQ WAD +D E Sbjct: 362 IRDTYNHAHYLEQRREMMQTWADHVDALAE 391 >UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL52_9BACT Length = 378 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 149/385 (38%), Positives = 226/385 (58%), Gaps = 18/385 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I+ A P+EK Y + D GL+L + +GKK W++R+K G+E T+G+YP ++L+ Sbjct: 3 LTNVEIKRATPREKRYTMRDSEGLWLEITPAGKKTWKVRFKAQGREIKHTLGRYPDISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSV---GYATELAK 118 EAR K R +I + + S +F A+ +EW+E +QV V G+A + Sbjct: 63 EARLK----RDEIRLEL----VNHKSVPEGTFKALAEEWFE--RQVVPVRTHGHARTIRS 112 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D ILP +G DI+ +LL ++RR ED+G +E A++ + G+V RY I TG+A+ Sbjct: 113 RLDRLILPYLGDKPPADIDAPELLAILRRIEDQGHVETAHRVSQIVGQVLRYGIATGQAR 172 Query: 179 YNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 ++ DL A+ + ++FP L +I +A+ FSGS+V A YTA+R E Sbjct: 173 HDITADLKGALIPRKPEHFPTLTDPKKIGGLMRAIQAFSGSVVVRCAMLFQIYTAVRPGE 232 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 +R WK +D + + I A MK R+ H+VP+S Q + +L + +T E +F Sbjct: 233 MRKAEWKEIDGD--LWKIPAERMKKRRPHLVPLSSQAIGVLEEIRPLTGG-GELIFPSVR 289 Query: 298 DKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 K +PI + V ++++GY E +GHGFR FSTI NE +WP++ IE+QLAH + SV Sbjct: 290 SKTRPISDMTVNAALRRMGYAQNELTGHGFRAMFSTIANECQWPSNVIELQLAHVDKNSV 349 Query: 357 RGIYNHAQYLDKRREMMQWWADWLD 381 R YNHA+ LDKRRE++QWW DWLD Sbjct: 350 RAAYNHAELLDKRRELLQWWGDWLD 374 >UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomonas RepID=A5W5R9_PSEP1 Length = 393 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 217/384 (56%), Gaps = 8/384 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT AKP+EK Y L D GL LYV +G K W R+ GK+ +++G YP + L+ Sbjct: 3 LTDTAARQAKPREKGYTLADSLGLTLYVAETGVKSWHFRFTWLGKQARISLGTYPEIGLK 62 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR + AR+D++ G DP K ++ + +F +Y+EW E +K + Sbjct: 63 EARARRDEAREDVAQGKDPRESRREKKVERLGAKERTFRRVYEEWLEFRKGGLTESTVKV 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 ++ + D+LP G +I I+ ++ +IRR E RG++ A K R+ G+VFRYA+ G Sbjct: 123 ISNAMELDVLPAFGLRQIDSIKRADVITLIRRIERRGSITTAVKTRQWIGQVFRYAVAIG 182 Query: 176 RAKYNPAPDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + NP ++ A K KN PFL ++PA KA+ + ATK+L TA R Sbjct: 183 MIEINPTAEMHAVTEKMAPHKNRPFLAFTEMPAIIKAIEESQSGLQLQCATKLLILTACR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E+R W +D + +I AS MK R+ HVVP+S Q VELL ++ I+ + ++VF Sbjct: 243 PAEVRKAEWSEIDLDTATWSIPASKMKMRRDHVVPLSRQAVELLRSMLPISGGL-KYVFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 R D +PI N + ++ + GY G +S HGFRH FST MN + D IE QLAHA+ Sbjct: 302 NRTDAVRPIGINYAVNLLDRCGYTGRQSPHGFRHLFSTEMNSRGYNKDWIERQLAHADSS 361 Query: 355 SVRGIYNHAQYLDKRREMMQWWAD 378 ++R +YNHA YL++RR+MMQ WAD Sbjct: 362 AIRDVYNHATYLEQRRDMMQAWAD 385 >UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJ08_9PROT Length = 418 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/388 (37%), Positives = 218/388 (56%), Gaps = 9/388 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+ AKP+ KPYR+ DG G+Y+ V +G K W++ Y+ K+K L +G YP +TL Sbjct: 3 LTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAYRFADKQKTLALGVYPDVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +ARD+ ARK ++ G DP K++ + +NSF I +E++ K +WS +A + Sbjct: 63 DARDRRNEARKLLANGADPGAVKQSQKKQAKIAASNSFELIAREFHSLKTPMWSTNHAAD 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 K + +I P G I +I+ +L+ IR E R A E A + +R V YAI TG Sbjct: 123 WIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEVAARVLQRVRAVCAYAIATG 182 Query: 176 RAKYNPAPDLADAMKGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA++NPA ++ A+ K K+F L ++P F +A+A + ++ AT +L T +R Sbjct: 183 RARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLMLTFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T E+R W D + ++ I A MK R+ H+VP++ Q +E+L L +T E +F Sbjct: 243 TGEVRGAKWCEFDLDAKLWKIPAERMKSREPHIVPLAKQAIEILGELHPLTGH-GEHLFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEW-PADAIEVQLAHANG 353 R K I EN VL VI+++GY+G +GHGFR ST +N D IE QLAH Sbjct: 302 NRTGNGKVISENTVLKVIERLGYKGRMTGHGFRTIASTYLNGVGMIRPDVIEAQLAHTEA 361 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 + R YN A Y++ R MMQ+WAD LD Sbjct: 362 NATRAAYNRANYMEYRAAMMQFWADTLD 389 >UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VMW7_9GAMM Length = 419 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 221/386 (57%), Gaps = 8/386 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ Q+ KP EK R D GLYL V SG + W+L+Y+ +G+E LT+G YP ++L Sbjct: 21 MLSDAQVRKIKPLEKKKRYADEKGLYLEVTPSGGRFWRLKYRFNGRESTLTIGSYPEISL 80 Query: 61 QEARDKAWTARKDISVGIDP--VKAKKASSNNNS--FSAIYKEWYEHKKQVW-SVGYATE 115 +AR AR + IDP VK ++ + S F ++ EW E +K V Y + Sbjct: 81 AQARRARDEARIQLYSNIDPNAVKNQRLQQTDESILFKSLAMEWMEDRKAVIKETTYLRD 140 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 L+ +F+ D+ P +G + I I+ +L ++ E RGA+E A ++ G +FR+AI G Sbjct: 141 LS-VFEKDLFPALGNMPIDQIKGKDVLACAKKIEARGALEMAKRSIPLTGRIFRFAIRKG 199 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + +P P L +A+K + K+ L + P F + + + GS + A +++ T +RT Sbjct: 200 IMENDPTPHLQEALKPRKVKHMARLDILEFPPFLERMDRYHGSPMIKTAIQLMTLTFVRT 259 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR M W +DFE ++ I A MK + H+VP+S Q +EL+ L +T ++VF Sbjct: 260 AELRMMEWDEIDFETKLWRIPADKMKMAQPHIVPLSKQAIELIEQLRPLTGN-KQYVFYN 318 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 + KP+ NA+L VI+ +GY G +GHGFR ST ++E + DAIE+QLAH G + Sbjct: 319 -HSTAKPMSSNALLCVIRTMGYNGKMTGHGFRGLASTTLHEQGYMHDAIEIQLAHRVGNA 377 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLD 381 V YNHAQ+LD R +MMQ W+D++D Sbjct: 378 VSQAYNHAQHLDYRIKMMQEWSDFID 403 >UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4SSF4_AERS4 Length = 404 Score = 249 bits (637), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 139/372 (37%), Positives = 210/372 (56%), Gaps = 8/372 (2%) Query: 18 RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVG 77 +L D GL+L V SGK W+L+Y+ GKEK L +G YP ++L+EAR K AR+ I+ G Sbjct: 21 KLADEKGLFLLVNKSGK-YWKLKYRHGGKEKKLALGVYPEVSLREARAKRDEARRVIAEG 79 Query: 78 IDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGL 131 IDP +K S + NS + +EW++ + +WS G+AT + + + D+ P +G + Sbjct: 80 IDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWSPGHATRVIESLEVDVFPDLGLV 139 Query: 132 EIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKG 191 I ++ +LE +R+ E RGA E A + +R + RYAI TGRA YNPA DL A+K Sbjct: 140 PITELTAPMILEALRKVEKRGATETAGRILQRVSAIMRYAIQTGRASYNPAQDLRGALKA 199 Query: 192 YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENR 251 ++++ P LP ++P F + L + + +A +L T R E+R W D E Sbjct: 200 TKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLMLTMTRPGEVRFARWDEFDMERA 259 Query: 252 IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLV 311 I A+ MK R H+VP+S Q + +L L +T E +F P+ EN + Sbjct: 260 EWRIPAARMKMRTEHLVPLSRQALAVLDELHQLTGHC-ELLFPSERKLTNPMSENTLSYA 318 Query: 312 IKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRRE 371 + ++GY+G+ + HGFR ST +NE + D IE QLAHA VR Y+ A+YLD RR+ Sbjct: 319 MGRMGYKGIATPHGFRALASTTLNEEGFDPDVIERQLAHAERNKVRAAYHRAEYLDDRRK 378 Query: 372 MMQWWADWLDEK 383 ++QW AD+ D + Sbjct: 379 LLQWLADFYDSQ 390 >UniRef50_D0W4G5 Site-specific recombinase, phage integrase family n=4 Tax=Neisseria RepID=D0W4G5_NEICI Length = 428 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 138/395 (34%), Positives = 211/395 (53%), Gaps = 12/395 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +QI AKP EKPY+L DG GLYLY+ SG K+W+ + +GK K L++GKYP ++L Sbjct: 26 LNDRQIRNAKPAEKPYKLNDGKGLYLYINTSGGKLWRFDFACNGKRKTLSIGKYPTVSLA 85 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 EAR+ A TAR+ ++ G DP +AK+ N+F +I + W+ W +A Sbjct: 86 EARETAETARRMLAAGQDPSEAKQQEKEERKAAALNTFESIARRWHTDNLTRWKENHAAR 145 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F+ D+ P++G + IQ+I + ++ RG A K R G VF YA + Sbjct: 146 VLRYFETDVFPVVGAMPIQEIRVNHIKTLLDSVMARGVNNTAEKIREWAGAVFDYAALLE 205 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NPA L + N P LP +++ F L + IA ++ +R Sbjct: 206 LTESNPAHVLRRYIPSVPAGNRPALPREELTEFFCRLLLADIEPQNRIALMLIMLVFVRN 265 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKI-----HVVPMSDQVVELLTTLSSITKPVSE 290 ELR W +DF+ R+ I A MK K H VP++D +ELL L +IT + Sbjct: 266 TELRGGRWDEIDFDARLWVIPAERMKHEKTAPKPPHTVPLADWTLELLAELKAITGD-TP 324 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 ++F R K I EN + ++ +GY+G+ + HGFR S+++NE + DAIE QLAH Sbjct: 325 YLFPSRTKKDGFISENTLGKIMNNMGYKGIATPHGFRALASSVLNEQGFNPDAIERQLAH 384 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +R YN A Y+ +RREMM+W++ +L E+ + Sbjct: 385 VEENRIRAAYNRADYMTERREMMEWYSGYLRERYD 419 >UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomonas eutropha C91 RepID=Q0AH02_NITEC Length = 393 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/391 (35%), Positives = 216/391 (55%), Gaps = 11/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AAKPKEK Y+L DGNGL L + G K W+ RY + KE +L++GKYP TL Sbjct: 3 LTDSAIRAAKPKEKQYKLTDGNGLTLLIYPDGSKHWRYRYLFNEKESMLSLGKYPETTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + + GI+P +K S NSF A+ + W+ H K + + Sbjct: 63 QARSIHDGYKAILKQGINPSTHRKEEKRKAIVSVENSFEAVARTWWMHWKHAKTERHVAY 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + DI P IG + + M +E++ + + RGA++ A + CG+V RYA+ G Sbjct: 123 TLRRMEADIFPFIGAKPVNTLTAMHFIELVYKVQSRGALDIAKRVLTMCGQVMRYAVQHG 182 Query: 176 RAKYNPAPDL--ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 ++ NPA D+ AD +K +K N +P ++P + + + G ++ +A +++ T + Sbjct: 183 LSERNPAADIKPADILKKRKKVNHKRIPESELPDLLQKINQYDGQPLTRLALQLMTLTFI 242 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI-TKPVSEFV 292 RT EL W+ + F+N I MK R H+VP+SDQ + +L + ++ + PV F Sbjct: 243 RTSELIGGRWEEISFDNAEWRIPPERMKMRSQHIVPLSDQAITVLREIKALNSDPVLLFP 302 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 RN K + N ++ + +IGY+G +GHGFR ST+++E + IE+QLAHA Sbjct: 303 SERRNGKT--MSNNTIIYALYRIGYKGRMTGHGFRGLASTVLHEKNFDHKWIELQLAHAE 360 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 V YNHA YL++RR+MMQWW ++++ K Sbjct: 361 RDEVSAAYNHALYLEQRRKMMQWWGEYIEMK 391 >UniRef50_Q2T016 Site-specific recombinase, phage integrase family n=30 Tax=Bacteria RepID=Q2T016_BURTA Length = 438 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/393 (35%), Positives = 217/393 (55%), Gaps = 17/393 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKP E+PYRL DG GLYL V +G + W+++Y+ DGKEK+ + G YP ++L Sbjct: 48 LTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGSRYWRMKYRFDGKEKLASFGVYPEVSLA 107 Query: 62 EARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR ARK ++ G DP +K +A ++SF A+ +EW+E +K W+ YA + Sbjct: 108 QARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGWTEVYANK 167 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D P IG ++DIE +LE++R E RG E A + +R VF+Y I+TG Sbjct: 168 VINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMTG 227 Query: 176 RAKYNPAPDLADA----MKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 R NPA D+ DA KG K+ + +IP + +A +SG V+ +A + + T Sbjct: 228 RCSRNPAADI-DAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALT 286 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI--TKPVS 289 RT E+ + W D I MK R H+VP+S Q +E+L L + + + Sbjct: 287 FTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRELNGNQRLV 346 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 + GR+ I N +L + ++GY+ +GHGFR +T++ E + D ++ QLA Sbjct: 347 FYSVQGRSH----ISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQLA 402 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 HA V Y HA+YL +RR+MMQ WAD+L + Sbjct: 403 HAERNQVTAAYVHAEYLPERRKMMQHWADYLTQ 435 >UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P090_AZOSE Length = 402 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 144/387 (37%), Positives = 211/387 (54%), Gaps = 7/387 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K I K KP ++ DG GLYL V +G K+W+ R+++ GKE + +G YP ++L Sbjct: 3 LTDKAIRGVKGGAKPVKMADGGGLYLEVTPAGGKLWRYRFRLAGKENVFAIGAYPRVSLA 62 Query: 62 EARDKAWTARKDISVGIDPV----KAKKA--SSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR AR + G +P +AK+A N N+F+ + EWY+ K WS G+ Sbjct: 63 DARKARDEARDLVKQGFNPSHYRQQAKQAVIDENLNTFAPVADEWYQSKVDSWSKGHRHH 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D DILP IG L I+ I L +V+++ RGA RA AR+ G VF AI+T Sbjct: 123 VRTILDKDILPRIGKLPIRSITSPLLHDVMKKIVARGATTRAILARQIMGSVFNLAILTH 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA NPA L + ++ L + F + L+ ++G + IA ++L TA+R Sbjct: 183 RADTNPAEPLKRQIARCVTEHHRHLEERDVGDFLRKLSDYTGHATTRIALQLLMLTAVRP 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 E+ W D + + TI MK RK H+VP+S+Q V+LL L IT + F+F Sbjct: 243 GEVCGARWAEFDIDGQNWTIPKERMKTRKPHIVPLSNQAVDLLKELEPITGDTA-FLFPS 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 + K + + ++ + ++GY S HG R FST++N + +D IE QLAH G Sbjct: 302 QGTKTQTMPTQSIRNAVVKLGYADKFSPHGARGTFSTMLNGRGYNSDWIERQLAHDEGNR 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDE 382 VR YNH QYL +RR+M+Q WAD LDE Sbjct: 362 VRASYNHMQYLPERRKMLQEWADLLDE 388 >UniRef50_C0N6F7 Site-specific recombinase, phage integrase family protein n=2 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F7_9GAMM Length = 401 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 137/396 (34%), Positives = 218/396 (55%), Gaps = 17/396 (4%) Query: 2 LTVKQIEAAKP--------KEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVG 53 LT KQI+ KP KPY++ D +GLY+ VP+ G K W+ ++ +G E+ L++G Sbjct: 3 LTDKQIKNLKPGIRPDKSETNKPYKVSDSHGLYIEVPLKGSKRWRYKFYFEGTERKLSLG 62 Query: 54 KYPLMTLQEARDKAWTARKDISVGIDPVKAKK-----ASSNNNSFSAIYKEWYEHKKQVW 108 YP ++L+EAR K RK I GIDP ++ AS + N++ + +EW+ K W Sbjct: 63 TYPKISLKEARQKRDDIRKKIDAGIDPSYERRKKRLNASVSGNTYEEVAREWHARNKANW 122 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + YA + + P IG +I I +LL VI+R DRGA+E A++ RR +F Sbjct: 123 TKKYADLTLSRLEQNAFPWIGDRQIDKITAPELLTVIKRVFDRGAIETAHRIRRLSNTIF 182 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKV 227 ++AI G + NPA L A + K+ + ++ +A+ +SG + A K+ Sbjct: 183 KFAIANGMTETNPAAALEGAFPTQKVKHHSAVTEPKKVAELLRAIDGYSGHFATRCALKL 242 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 R +R+ W ++D EN + I MK R+ H++P+S Q +E+L + +T Sbjct: 243 SALVMNRPINIRAAEWGDIDLENSVWRIHMGRMKSRRTHIIPLSRQALEILEEIRPLTGE 302 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEV 346 ++VF K +P+ EN + ++++G+ G E S HGFR ST+++E + +D +E Sbjct: 303 -GKYVFPCMRSKARPMSENTICAALRRMGFSGEEMSAHGFRGMASTLLHEKGYNSDWVER 361 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 QLAH + S R YNHAQ+LD R +M+Q WAD+LDE Sbjct: 362 QLAHID-SSTRSAYNHAQHLDDRAKMLQEWADYLDE 396 >UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L516_9DELT Length = 417 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 138/394 (35%), Positives = 217/394 (55%), Gaps = 15/394 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AK +KP ++ DG GL+L V +G K+W+ +Y DGKEK+L +GK+P + L+ Sbjct: 8 LTDVAIRNAKAADKPVKMFDGAGLFLQVTPTGGKLWRFKYLFDGKEKLLALGKWPDVGLK 67 Query: 62 EARDKAWTARKDISVGIDPVKAKK---------ASSNNNSFSAIYKEWYEHKKQVWSVGY 112 AR + AR ++ G+DP + +K A N N+F+ + ++W+ + +VWS G+ Sbjct: 68 MARQRRDEARALVAQGVDPSEKRKQDRADAEGQAVENANTFAVVARDWHAKQVKVWSEGH 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A ++ + + P+ G + I + +L +R ED+G E A + R+ C VF +AI Sbjct: 128 AAKILARMEQHLFPVFGNIPITTLRAPAILPTLRDIEDKGNHETAKRLRQYCEAVFTFAI 187 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TG A+ N DL A+ R N P + + +A+ + GS V++ A ++ Sbjct: 188 STGIAERNVGADLRGALAPCRATNRPAIIDPKGVAQLLRAIDGYQGSPVTVAALRLAPLV 247 Query: 232 ALRTKELRSMLWKNVDF---ENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 +R ELR W +D + +I A MK R+ HVVP+S Q V+++T + S+T Sbjct: 248 FVRPGELRQAEWSEIDLDAADGPRWSIPAEKMKMRRDHVVPLSKQAVDIITEIYSLTGQ- 306 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 ++F K + + A+ ++++GYE G HGFR ST++NE W +D IE Q Sbjct: 307 DRYLFPCNRTKGRCMSNMALNAALRRMGYEQGEMCAHGFRAMASTLLNELGWNSDLIERQ 366 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAHA S+R YN A+YL +RR MMQ WAD+LD Sbjct: 367 LAHAERNSIRAAYNRAEYLPERRRMMQAWADYLD 400 >UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli RepID=Q93UI5_ECOLX Length = 401 Score = 240 bits (612), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 204/379 (53%), Gaps = 15/379 (3%) Query: 16 PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDIS 75 P R DG G+YL + SG + W+++Y+ GKEK+L G YPL+ ++EARDK + A++ +S Sbjct: 14 PGRYADGGGMYLQITASGGRYWRMKYRHGGKEKLLAFGVYPLVGIKEARDKLFYAKQALS 73 Query: 76 VGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIG 129 G DP KK + N+F A+ ++W +H+ W + + D+ P +G Sbjct: 74 RGEDPGATKKLAKFQAEQDAANTFKAVAEDWLDHQAGRWEAITLSRTRASLEADVYPTLG 133 Query: 130 GLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDL--AD 187 L I I P Q+++V+++ E RGA E A + +R +FRY R + N DL ++ Sbjct: 134 SLPISSITPRQVMDVVKKIEKRGASEIATRVLQRIKSIFRYGTTHQRIERNTMADLVPSE 193 Query: 188 AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVD 247 +K R ++ L Q+P F K LA++ G ++ A +L TA R E+R W +D Sbjct: 194 ILKPRRVQHRAALAPAQLPEFLKKLASYEGEPHTVNALHLLMLTAARPGEVRGARWDEID 253 Query: 248 FENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS---EFVFAGRNDKKKPIC 304 + ++ I MK R HVVP+S + V + + +P+S + VF KP+ Sbjct: 254 LKAKLWRIPPERMKMRSEHVVPLSSEAVAAIEAM----RPLSGNRDLVFPSPFYPSKPLS 309 Query: 305 ENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQ 364 EN + ++GY+ L + HGFR FST+ NE W ADAIE QLAHA VR Y+ Sbjct: 310 ENTFNSAMARMGYKYLATAHGFRALFSTVANESGWSADAIERQLAHAERNQVRAAYDRGV 369 Query: 365 YLDKRREMMQWWADWLDEK 383 L +R +MM WWA +L E+ Sbjct: 370 RLPERVKMMNWWAQYLAER 388 >UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacteria RepID=B0RRY6_XANCB Length = 409 Score = 240 bits (612), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 152/398 (38%), Positives = 211/398 (53%), Gaps = 29/398 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT I AKP P +L DGNGLYL + G + W+ Y+ + GK L+ G YP ++ Sbjct: 3 LTDTAIRRAKPAATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPEVS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYA 113 L +AR++ AR+ ++ IDP + +KA NSF + +EW+ +++ WS YA Sbjct: 63 LADARERLAEARRLVAAKIDPGEQRKAVKAAGEAAAANSFEVVAREWFAKQQKEWSPQYA 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + DI P IG I I +LL+ + R E RGA+E A++A + CG VFRYA+ Sbjct: 123 EKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQRGAIETAHRALQTCGAVFRYAVR 182 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 TGRA+ +P L A+ +R + PF A L S + LR L Sbjct: 183 TGRAEADPTGALKGALTPWR--SMPFAAATTSEEATTVLRKIDISTSRPVVRSALRLAPL 240 Query: 234 ---RTKELRSMLWKNVDFENRIITIDAS-----VMKGRKIHVVPMSDQVVELLTTLSSIT 285 R EL M W +D +DA V K ++ H+ +S Q +E+L L +T Sbjct: 241 LFARPGELVRMRWTELD-------LDAGQWRYFVTKTKRTHIAALSTQAIEILRDLHPLT 293 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESG-HGFRHEFSTIMNEH-EWPADA 343 EFVF G D +K + NA+L+ ++ G E ES HGFRH ST++NE W DA Sbjct: 294 G-RGEFVFPGGRDPRKHMSGNAILVAARRCGIEKDESTIHGFRHMASTLLNEMGHWNPDA 352 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 IE L H G VRGIYN AQYLD+RR+MMQ WAD LD Sbjct: 353 IESALTHKMPG-VRGIYNQAQYLDERRKMMQSWADNLD 389 >UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV41_9DELT Length = 401 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 215/387 (55%), Gaps = 8/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AKPKEKPY++ D GLY+ V G K+W+L+Y+ +GKE++ +G YP ++L+ Sbjct: 5 LTDTAIRTAKPKEKPYKMADSGGLYVLVNPGGGKLWRLKYRFEGKERLFAIGTYPAVSLK 64 Query: 62 EARDKAWTARKDISVGIDPV-----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 EAR +A TA++ I+ G+DP +A + + +F + +EW++ K W+ +A ++ Sbjct: 65 EARARAVTAKEMIARGVDPCAARKAAKAEAIARSRTFEVVAREWHKKKLAGWTPNHARQI 124 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + P +G I ++ L V+ + E +G +E A + + CG+V RYA + G Sbjct: 125 IRRLETLAFPDLGSRPIAELGAPDFLAVLGKVERQGHLETARRLAQICGQVTRYARLAGM 184 Query: 177 AKYNPAPDLADAMKGYRKK-NFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 +PA L +A+ + + +I A +A+ + G + A K++ Y +R+ Sbjct: 185 IVADPASHLTEALTTKPVRLHAAITEPREIGALLRAIDDYPGDVSVSFALKIMPYVFVRS 244 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W +D + I A MK R+ H+VP++ QVV + L +IT E VF G Sbjct: 245 SELRRATWAEIDLDRAEWLIPAERMKMRRPHLVPLARQVVGMFRALHAITGN-RELVFPG 303 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + I + +L ++++GY E + HGFR ST +NE + D IE QLAHA Sbjct: 304 TASVTRCISDVGLLNALRRLGYGRDEMTVHGFRSMASTRLNEMGYRPDVIEAQLAHAERN 363 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 SVR YN AQY+++RR MMQ WAD+LD Sbjct: 364 SVRDAYNRAQYVEERRRMMQEWADYLD 390 >UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae RepID=Q8VQN9_ECOLX Length = 421 Score = 236 bits (603), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 143/404 (35%), Positives = 219/404 (54%), Gaps = 22/404 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AAKP +K Y+L DG G++L V +G + W+LRY+I GKEK L +G YP ++L Sbjct: 3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN----NNSFSAIYKEWYEHKKQVWSVGYATELA 117 EAR K ARK IS GIDP + K+A SF I + W+ KQ W+ ++ ++ Sbjct: 63 EARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHSDKVL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 K + + P IG +I + LL +R E + E A++ ++R V RYA+ +G Sbjct: 122 KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +YNPA D+A A+ ++++ P L ++P + ++ G V+ +A + +R+ E Sbjct: 182 RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFIRSSE 241 Query: 238 LRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSIT 285 LR W +D +N + TI A K R H+VP+S Q V +LT L + Sbjct: 242 LRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA 301 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFR-HEFSTIMNEHEWPAD 342 + +F G +D +KPI EN V ++ +GY+ + GHGFR S ++ W D Sbjct: 302 GE-NGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD 360 Query: 343 AIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 A E Q++H VR Y H A++L++RR M+QWWAD+LD E Sbjct: 361 AGERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE 404 >UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQ25_BRASB Length = 407 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 216/389 (55%), Gaps = 15/389 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + AK + K +L DG GL+L + G K W+L Y+ GK++ L +G YP + L Sbjct: 3 LTDTKCRNAKGQIKSRKLSDGGGLHLLITPDGAKYWRLAYRWHGKQRTLALGVYPAVGLI 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR A++ I+ IDP K+ + N+F A+ +EW+E+ K S YA + Sbjct: 63 EARASRDDAKRSIAADIDPSIVKRERKRAAKIATGNTFEAVAREWHENWKDARSPYYAAQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + D P IG I +EP +LL+++R+ E RG E A + ++ G++FR+AIVTG Sbjct: 123 ILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLVGQIFRFAIVTG 182 Query: 176 RAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RAK +P+ DL DA++ + +P ++P F + L ++SG + +A K++ T LR Sbjct: 183 RAKRDPSVDLKDALRATGEPQRHRAMPLSELPTFLQKLESYSGEQQTKLALKLVTLTFLR 242 Query: 235 TKELRSMLW---KNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE- 290 T ELR+ W +N+D + + I A MK R H+VP+S Q V L L +++ Sbjct: 243 TTELRAGKWNELENLDENSALWRIPAERMKMRLEHLVPLSRQAVAALRELRTLSGGSPNI 302 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLA 349 F G+ D + N +L + ++GY G + HGFR STI+NE + D IE QL+ Sbjct: 303 FPSPGKGD---CMSSNTMLYALYRMGYHGRATTHGFRAVASTILNETNLFNRDWIERQLS 359 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWAD 378 H VR YN A+++ RR MMQWWAD Sbjct: 360 HVERNEVRRAYNAAEWMPDRRRMMQWWAD 388 >UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4I9_9PROT Length = 410 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/401 (35%), Positives = 222/401 (55%), Gaps = 27/401 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKPK+KPY+L DG GL+L V ++G K W+L Y+ K+K L +G YP ++L Sbjct: 3 LTELAVKNAKPKDKPYKLSDGGGLFLLVQINGGKYWRLAYRFADKQKTLALGIYPDISLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR++ ARK ++ DP KK ++ NSFSA+ KE ++ K +W+ G+A + Sbjct: 63 DARERREQARKLLANDTDPSAIKKETKRILQTATVNSFSALAKELHKVKAPMWTEGHAKQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + P+IG + +IEP++L+ ++R E +G E ++ + F+YAI G Sbjct: 123 WMLNMEKYAFPVIGDRPVAEIEPLELVGIMRNVEAQGTFETRDRLLQTISSTFKYAIAIG 182 Query: 176 RAKYNPAP---DLADAMKGYRKKNFPFLPADQIPAFNKALATFSG----SIVSLIATKVL 228 +AKYNPA LAD K +NF L D+IPAF +A + S++++ A ++L Sbjct: 183 KAKYNPAEIRLALADRPK---VENFACLSTDEIPAFLRAFDDYQERGKVSLIAVAAFRLL 239 Query: 229 RYTALRTKELRSMLWKNVDFENR--IITIDASVMKG----RKIHVVPMSDQVVELLTTLS 282 TA R+ E+R W + D + II + + KG RK H VP+SDQ + +L L Sbjct: 240 LLTATRSSEVRFSKWADFDLDAGCWIIPAEQTGRKGKHGKRKPHAVPLSDQAIAVLRDLY 299 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE--HEWP 340 +T E VF RN + I EN V +I+ +GY+G ++GHGFR T + + H W Sbjct: 300 PVTGH-GEHVFPSRNGMGRVISENTVNKIIETMGYKGRQTGHGFRSLARTTLGDMGHRW- 357 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + +E L+HA Y Y ++RR +MQ WAD+LD Sbjct: 358 -EVLEAMLSHALENQTAAAYVRTTYFEERRGIMQKWADYLD 397 >UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio RepID=B8J055_DESDA Length = 402 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 208/386 (53%), Gaps = 6/386 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I KP K R +DG GLYL V+G K W+++Y+++GKEK L+ G +P ++L+ Sbjct: 7 LTEIKIRNIKPNGKIERFVDGEGLYLETSVAGGKHWRMKYRVNGKEKRLSFGPWPDISLK 66 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN---SFSAIYKEWYEHKKQVWSVGYATELAK 118 EAR+ A++ + +DP KK + +F I E+ EH++ VW+ + + Sbjct: 67 EAREMRDEAKRQLRESLDPSAEKKKAKQEQAAPTFRDIALEYVEHQRSVWAASHTRTVEG 126 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D+ P G I + P +L ++R+ E+R A E A++ C +F+YA+ G + Sbjct: 127 RLALDVYPAFGAKPIAAVTPQDILAMLRKIEERRAFETASRVLGFCSLIFKYAVTLGLVE 186 Query: 179 YNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +P DL A+K Y K + ++ A +A+ + GS+V A T R E Sbjct: 187 ADPCRDLRPALKPYAKGQLAAITKPKEVGALMRAIDDYKGSVVVRAALLFSALTFCRPGE 246 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 +R + W ++FE TI A MKGR H VP+S Q +E+L + T +++VF Sbjct: 247 IRHVEWAEINFEREEWTIPAEKMKGRTEHRVPLSRQALEVLHGIMPYTG-SAKYVFPTPR 305 Query: 298 DKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 +P+ EN VL ++ +GY + + HGFR ST++NE DAIE QLAH + Sbjct: 306 SNNRPLSENGVLSALRNMGYTKEQMTAHGFRSMASTLLNELGHRPDAIEAQLAHKGADKI 365 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDE 382 R YN A+Y+ +RR +MQ WAD+L++ Sbjct: 366 RATYNRAEYMKERRNLMQAWADYLED 391 >UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 Length = 439 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 141/402 (35%), Positives = 217/402 (53%), Gaps = 24/402 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L +Q+E AKPK+K Y++ DG GLYL V G K W+++Y+ D KE L G +P +T Sbjct: 7 LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNS----FSAIYKEWYEHKKQVWSVGYATE 115 L +AR K A+K + GIDP +K + NS F AI +EW+ K+ WS + + Sbjct: 67 LAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAYTFEAIAREWHASNKR-WSEDHRSR 125 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + I P IG +I+ ++ LL I++ + G + A + ++R + RYA+ Sbjct: 126 VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND 185 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NPA D+A A+ + +++P LP+ + P F LA + G +++ IA K+ T +R+ Sbjct: 186 YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVKLSLLTFVRS 245 Query: 236 KELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSS 283 ELR W DF+ + I A MK ++ H+VP+S Q + LL L Sbjct: 246 SELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQLKQ 305 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEHE-WP 340 I+ E +F G +D K + EN V ++ +GY+ GHGFR + E W Sbjct: 306 ISGD-KELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS 364 Query: 341 ADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 DAIE QL+H+ +VR Y H +++LD+RR MMQWWAD+LD Sbjct: 365 DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLD 406 >UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacteria RepID=B4RZR6_ALTMD Length = 412 Score = 230 bits (586), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 219/398 (55%), Gaps = 22/398 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI+ A+ K L D GL L V +G K W+L+Y+ GK+K L +G YP ++L+ Sbjct: 3 LTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYRFQGKQKTLAIGVYPEVSLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAI------YKEWYEHKKQVWSVGYATE 115 +AR+ AR+ + IDP K+ + +S S I + W+ +K WS G+A Sbjct: 63 DAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEGHAAR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +D+ L +G I +I P ++ +++ E RGA++ A + + V R+A+ TG Sbjct: 123 IWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFAVQTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF--SGSIVSLIATKVLRYTAL 233 +NPA +L+ ++ + + LP +++P F + L + G +++ +A ++L +T + Sbjct: 183 VLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLVHTFV 242 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS---E 290 R EL W D E ++ I A MK + H+VP+S Q + +L TKP S E Sbjct: 243 RPGELAGARWDEFDLEEKLWRIPAHRMKMKSDHIVPLSRQALAVLEN----TKPFSARFE 298 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESG------HGFRHEFSTIMNEHEWPADAI 344 FVF D+ K + +N + + I ++GY+G G HGFR S+I+NE + DAI Sbjct: 299 FVFPSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSILNETGFNPDAI 358 Query: 345 EVQLAHANGGSVRGIY-NHAQYLDKRREMMQWWADWLD 381 E QL+H VR Y +HA+YL++R+EMMQWW+D+LD Sbjct: 359 ERQLSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLD 396 >UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola DG893 RepID=A6F4S5_9ALTE Length = 437 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/394 (35%), Positives = 208/394 (52%), Gaps = 17/394 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 M+T + AK K+ YRL D GL L + SG K W+ RY++ GK + TVG+YP +T+ Sbjct: 1 MITDTKARKAKAKDTTYRLADSGGLALEIRPSGSKFWRYRYRLHGKAGMYTVGEYPTITI 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR A+K ++ G P + KK + N+ + KEW K WSV Y Sbjct: 61 SEARAIRDWAKKCVANGEAPAEVKKRELAERRAEQANTLEEVGKEWIARNKAGWSVYYHR 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ +M + DI P +G I+DI P Q+L ++R E+R N ++ ++R+AI T Sbjct: 121 QVTRMLEADIWPNLGKKGIRDITPAQMLAELQRVEERAPTVAVN-LKQWLAAIYRHAIAT 179 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI---VSLIATKVLRYT 231 RA +P L A+K + K+ P D+ +A+ G+I ++ IA ++L T Sbjct: 180 LRADNDPTAPLRGAIKKPKAKHKPSYNLDEFGKLCRAIWPKEGAIAYRITEIAIRLLALT 239 Query: 232 ALRTKELRSMLWKNVDFENR--IITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT--KP 287 RT E+RS W D E+ TI MK H+VP+S Q VELL L +T +P Sbjct: 240 MARTVEVRSARWDQFDLESEEPTWTIPGEKMKRGVTHLVPLSSQAVELLRELEGLTGNRP 299 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 + F +P+ + V++++GY GL SGH FR ST++N + + D +E Q Sbjct: 300 ---YCFPNLRQPTEPMSATTINRVLERLGYGGLFSGHAFRTTASTLLNNYGFDGDWVERQ 356 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAH R YNHA+YL +RR M+QWWAD +D Sbjct: 357 LAHTEENKSRASYNHAEYLYQRRIMLQWWADLVD 390 >UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae RepID=B9Z434_9NEIS Length = 395 Score = 226 bits (577), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 200/383 (52%), Gaps = 8/383 (2%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID-GKEKILTVGKYPLMTLQEAR 64 +I +KP +KPY+L DG GLYL + +G K W+ RY K+ I T+G+YP ++L EAR Sbjct: 7 KIRTSKPLDKPYKLQDGKGLYLEIRPTGAKFWRYRYWTSPTKDGIYTIGEYPDVSLAEAR 66 Query: 65 DKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 + R + G +P KK + + + +EW WS Y ++ K Sbjct: 67 AERERVRALVKEGKNPTAEKKLDKLRSQKETATTLAVVAEEWKVVNWPHWSETYRKQVEK 126 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D+L G L I+++ QLL I + ++RGA A R+ G +FR+AI T RA Sbjct: 127 HLQRDLLDEYGELPIREVTSAQLLAAISKIDERGAPSIARLVRQWAGSIFRHAIATLRAD 186 Query: 179 YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 +P L A++ ++ L AD++P F KAL + G ++ +A + T +RT+EL Sbjct: 187 SDPTYPLRGALRMPPTRHNAHLSADELPGFLKALDAYKGFGLTRLAVNLQMLTLVRTQEL 246 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W D + I MK R H+VP+ Q V ++ L +T +VF + Sbjct: 247 RLAEWAEFDLDAAEWRIPPEKMKMRDPHIVPLPKQAVAIMRELEPLTG-RRRWVFPNVRN 305 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRG 358 + +L VI+ +GY+G +GHGFR STI++E W D IE QLAH V+ Sbjct: 306 HDTGMTNTTILRVIEILGYKGRATGHGFRATASTILHEQGWNTDIIERQLAHLERNKVKA 365 Query: 359 IYNHAQYLDKRREMMQWWADWLD 381 YNHA YL +RREM+Q WAD+LD Sbjct: 366 AYNHAGYLKERREMLQAWADYLD 388 >UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root RepID=A1BGX1_CHLPD Length = 419 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 134/391 (34%), Positives = 215/391 (54%), Gaps = 16/391 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q+ AKP EK Y+L DG GL+L V SG K+W+ +Y+ DGK+K+L +G+YP ++L Sbjct: 8 LSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQYPEISLA 67 Query: 62 EARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR + AR ++ DP K +A + +SF + +EW+ VWS G+A Sbjct: 68 NARKRREEARTLLANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVWSPGHALT 127 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D+ P IG + +I + ++ + E RGA+E A + + CG+VFRYA+ TG Sbjct: 128 VMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQVFRYAVATG 187 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPA----DQIPAFNKALATFSGSIVSLIATKVLRYT 231 R +++P+ L + + +RK+ A ++ A+ + G+ V A ++ Sbjct: 188 RLEHDPSAAL-KSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSALQLTPLL 246 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R EL++M W ++DFE + +I A MK R+ H+VP+S Q + +L L T + Sbjct: 247 FVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPATGH-GRY 305 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEG-LESGHGFRHEFSTIMNE-HEWPADAIEVQLA 349 VF GR +P+ N++ ++ +GY+ +GHGFR TI++E + D IE QLA Sbjct: 306 VFTGRGS--RPMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEHQLA 363 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 HA YN +LD RR+MMQ WAD+L Sbjct: 364 HAVRDPNGRAYNRTSFLDDRRQMMQAWADYL 394 >UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria RepID=Q5P707_AZOSE Length = 415 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 133/388 (34%), Positives = 205/388 (52%), Gaps = 8/388 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT + A K +K YR+ D +GL L V SG K W+ R+++ K+ + +G+YP M L Sbjct: 1 MLTDAKCRAVKATDKTYRVADSHGLCLEVRPSGAKFWRYRFRLADKQNMHALGEYPAMGL 60 Query: 61 QEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 Q+AR AR+ + GI+P KA++ + ++F + EW E + WS Y Sbjct: 61 QDARRARDEARELVRKGINPSHHRGLEKAERILALGSTFETVTAEWIERNRPDWSANYIR 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ D+ P IG I D++ +L ++R+ E R + A + G VFR+A+V Sbjct: 121 QVRARMAGDVFPEIGQYPIADLKAAHVLAMLRKVEKRSPTQ-AALVKTWVGGVFRFAVVE 179 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + +P L A+K + + L D+I AF +A+A G + A ++ TA R Sbjct: 180 QLREDDPTFPLRRAVKPTQVNHHAILRNDEIGAFLRAIAAAPGEVTVKEAVGLMWATACR 239 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E+ W +D + + TI MK ++ HVV ++ Q VE+L + T + E VF Sbjct: 240 INEVTGARWAGIDLDAGLWTIPPGRMKAKQEHVVTLTRQAVEILRRVQVHTGTL-EHVFP 298 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 R+D+K+P+ AV + ++ GY G + HG R FSTI N W AD IE+ LAH Sbjct: 299 HRSDRKRPMSGEAVRDLFRRAGYAGKFTPHGVRGTFSTIANGAGWRADVIELCLAHQERN 358 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDE 382 +R YNHAQ LD+RRE++QWW D D+ Sbjct: 359 QIRRAYNHAQLLDERRELLQWWGDLSDQ 386 >UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5EXV7_DICNV Length = 401 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 140/395 (35%), Positives = 218/395 (55%), Gaps = 20/395 (5%) Query: 2 LTVKQIEAAKPKEKPY-RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT K I+ AK + Y RL DG+GL L + G W RY I+G+E+ +++G+YP M++ Sbjct: 12 LTDKIIQTAKKPSRGYLRLTDGDGLSLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSI 71 Query: 61 QEARDKAWTARKDISVGIDPV---KAKKAS------SNNNSFSAIYKEWYEHKKQVW-SV 110 + AR +A R + G+DP+ K K+A+ + +F + +EWY+ K+ W + Sbjct: 72 EAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNE 131 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 +A ++ + + P IG I I P +LL+V+ + DR E A++ ++R VF Y Sbjct: 132 KHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDRP--ETASRVKQRIRAVFDY 189 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 AI T R NPA L + K P LPA ++ F K L T+ G+ + +A ++L Sbjct: 190 AIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLLIL 247 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T R+ ELR W+ + + I A MK + H+VP+SD +E+L L S+ + S Sbjct: 248 TMTRSGELRFGQWQ--ELQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNSP 305 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLA 349 + G ++ P+ + + L +K++GY G HGFR ST MNE W DAIE QLA Sbjct: 306 YFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLA 363 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H + +VR YN A+YL++R MMQWWAD++ +K+ Sbjct: 364 HTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKI 398 >UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MGW9_DIAST Length = 428 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 139/409 (33%), Positives = 215/409 (52%), Gaps = 30/409 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSG-KKVWQLRYKIDGKEKILTVGKYPLMTL 60 L+ I + KP + +L DGNGLYL + V+G K W+ YK+ GK K +++G YP +L Sbjct: 6 LSDTTIRSVKPGDPRRQLTDGNGLYLLLYVNGGKHGWRFDYKVQGKRKTISLGTYPATSL 65 Query: 61 QEARDKAWTARKDISVGIDPV---KAKKASSN---------------NNSFSAIYKEWYE 102 AR KA AR+ ++ GIDP K+KKA+ N +F A+ +EW+E Sbjct: 66 SLARAKANAARELVAAGIDPSADRKSKKAAEKKVHEDAKLVAAGKPLNGTFEAVAREWFE 125 Query: 103 HKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR 162 + W+ YA ++ + + D+ P IG + D+ +LL V+RR EDRG +E A++A Sbjct: 126 VRSPEWAAKYAEKVLRRLEADVFPHIGIRPVGDVTAPELLAVLRRIEDRGVIETAHRAHE 185 Query: 163 RCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVS 221 C ++FR+A+ G AK + A DL ++ R ++FP L ++ +A + G+ V Sbjct: 186 SCSQIFRFAVGAGLAKGDVARDLKGLLRKPRTRHFPAILCPKRLGELLRACDGYVGTHVV 245 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK-------IHVVPMSDQV 274 A + LR ELR W ++ TI MK + H+VP+ Q Sbjct: 246 RAALSLAPMLLLRPGELRHARWDEINLNTATWTIPGERMKREREGKLNGMPHIVPLPRQA 305 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTI 333 V++L L IT E VF G +P+ EN V ++ +G+ E +GHGFR T+ Sbjct: 306 VQVLRELHPITG-RGELVFRGERHHHRPMSENTVNAALRAMGFGADEVTGHGFRATARTL 364 Query: 334 MNEHEWPA-DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 ++E A + IE QLAH+ S+ YN +YL +RR+MMQ WA++L+ Sbjct: 365 LDERLGIASEIIEAQLAHSVKDSLGRAYNRTEYLVQRRKMMQQWANYLE 413 >UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=C7SIL5_ECOLX Length = 420 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 124/401 (30%), Positives = 225/401 (56%), Gaps = 23/401 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I KP +KP+++ D +GLYL V G + W L+Y+I+GKE + +G YP ++L Sbjct: 3 LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKE----WYEHKKQVWSVGYATELA 117 +AR + RK +++ I+PV+ + A + + ++K W++ ++ WS A L Sbjct: 63 DARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRK-WSQNTADRLL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ I P+IG L + +++P +++++R E++G +E A++ R+ + R+A+ G Sbjct: 122 ASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF-SGSIVSLIATKVLRYTALRTK 236 NPA +L ++++P LP +++P + + + G ++ +A ++ + +R+ Sbjct: 182 DTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRLAVLLMLHVFIRSS 241 Query: 237 ELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSI 284 ELR W +DF NR+ TI A+ K R H+VP+S+Q + +L + I Sbjct: 242 ELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQIKDI 301 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFR-HEFSTIMNEHEWPA 341 T +E +F G ++ KP+CEN V ++ +GY+ + GHGFR S +M W Sbjct: 302 TGN-NELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360 Query: 342 DAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 DA+E Q++H +VR Y H A++L+ R+ MMQWW+D+L+ Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLE 401 >UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QA94_PSYCK Length = 413 Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 208/373 (55%), Gaps = 6/373 (1%) Query: 14 EKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 ++P + DGNGL L+V +G K W Y+ GK++ LT+G YP+M+LQ AR + ++ Sbjct: 21 KRPDKHSDGNGLQLWVRYTGVKSWISAYRWQGKQQTLTIGTYPVMSLQNARQRNIEIKRL 80 Query: 74 ISVGIDPVKAKK---ASSNN-NSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIG 129 I+ G++P KK AS + N F I + WY +K + T + D+ P IG Sbjct: 81 IADGVNPKDHKKEQQASQDGLNIFDNIAQSWYAERKTYLAESTFTRNYSAYMRDVKPSIG 140 Query: 130 GLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAM 189 I DI +L + + E RGA E A + R G++F++AI G A +NPA DLA+A+ Sbjct: 141 QKNINDITAPDILAIGKAVESRGANEMARRTIREVGQIFKHAIRNGLATHNPATDLAEAI 200 Query: 190 KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFE 249 K ++ N + + Q+P + + G ++ + L YT +RT E+R M W +D++ Sbjct: 201 KPHKTTNHHRITSQQLPKLLTDINAYQGDVLVKLGLWFLCYTFVRTNEIRFMEWSEIDYK 260 Query: 250 NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVL 309 + + I A MK +++H+VP++ Q + +L + + ++VF +KP ++A + Sbjct: 261 HGLWRIPADKMKAKRLHIVPLAPQAMAILEQIKELGFS-DQYVFFN-TSTRKPYSQSAFI 318 Query: 310 LVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKR 369 + +GY+G +GHGFR ST ++E E+ +AIE+QLAH + YN AQ+L R Sbjct: 319 NALWNMGYKGKMTGHGFRGLASTTLHEKEFMHEAIELQLAHDRENKISAAYNGAQHLPYR 378 Query: 370 REMMQWWADWLDE 382 +MM WA+++D+ Sbjct: 379 IDMMHQWANFIDD 391 >UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_ACIB5 Length = 427 Score = 223 bits (569), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 131/380 (34%), Positives = 200/380 (52%), Gaps = 11/380 (2%) Query: 11 KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTLQEARDKAWT 69 +P+ K YR LDG GLY V GKK W RYK DGK L +G YP ++ AR KA Sbjct: 38 EPESKEYRELDGEGLYFRVKPDGKKAWLFRYKKADGKWSWLGIGTYPELSGAGARKKARE 97 Query: 70 ARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDD 123 KDIS G +P+ K ++ NN +F + +EW + K W T + Sbjct: 98 IIKDISQGDNPIITKQERKRQELEQNNATFEVLAREWLDTKANTWVKDTMTRNKGALEKH 157 Query: 124 ILPIIGGLEIQDIEPMQLLEVIRRFED-RGAMERANKARRRCGEVFRYAIVTGRAKYNPA 182 I I G I+P++ + ++ + +G E+ N+ R C +++ +A VTGR YNP Sbjct: 158 IFAIFGKRLYTSIKPIEWMNHLKGIQQHQGIYEQVNRVRAMCRDIYDFAKVTGRIDYNPL 217 Query: 183 PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSML 242 L ++ K+N + ++PA +A+ ++ V + ++L R ELR Sbjct: 218 EGLQKFLQQGVKQNMSHVSEQELPALLRAINSYPTMDVRM-GLQLLAMLFCRPTELREAK 276 Query: 243 WKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKP 302 W+ D I I A MK R+ HVVP+ Q + +L L + + SE++F R+DK KP Sbjct: 277 WQEFDLNQGIWNIPAERMKKRREHVVPLPRQAITILNELKTY-ETNSEYLFPSRSDKSKP 335 Query: 303 ICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNH 362 + ++ ++++GYEG ++ HGFRH ST++N + IE LAH G V G+YN Sbjct: 336 KSDTVFIMALRRMGYEGRQTPHGFRHIASTLLNNRGFDERHIEAALAHVKDG-VAGVYNK 394 Query: 363 AQYLDKRREMMQWWADWLDE 382 AQYLD R+ M+QW+A+ L+E Sbjct: 395 AQYLDDRKIMLQWYANHLEE 414 >UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria RepID=C6XEE3_METSD Length = 406 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 215/378 (56%), Gaps = 15/378 (3%) Query: 18 RLLDGNGLYLYVPVSGKKVWQLRY--KIDG---KEKILTVGKYPLMTLQEARDKAWTARK 72 +L DG GLYL+V +G K W+ RY ++G KE L++G YP ++L +AR +A + Sbjct: 22 KLSDGGGLYLWVYANGAKYWRFRYFIHVEGGKKKEMSLSLGVYPEVSLNDARVEARKYQG 81 Query: 73 DISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILP 126 + GIDP AKKA + ++F+ I +EWY W+ +A ++ + + +++P Sbjct: 82 LVDNGIDPATAKKAKLLQTKAEAGDTFAEIAREWYRKMMPTWTETHARDIERRIEINLIP 141 Query: 127 IIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLA 186 I I ++E + L+ + + ++RGA +++ +V++YAI G+ KY+ P L Sbjct: 142 FIPQKPIAELEAVDFLKPLEKVQERGATHLSHRLLINIRQVYKYAIAKGKCKYDVTPGLG 201 Query: 187 DAMKGYRKKNFPFLPADQIPAFNKALATFS--GSIVSLIATKVLRYTALRTKELRSMLWK 244 +A+ + KN P + +++P +A + G + + +++ + LRT+EL W Sbjct: 202 NALIPHVAKNQPAIRPEELPKLMTDIADYHKLGEMKVQLGLQLMAHVWLRTRELTFGRWD 261 Query: 245 NVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPIC 304 +D+E + + MK + H++P++ QV +L L + + SE++ GRN P+ Sbjct: 262 ELDYEANLWRVPGERMKMDRDHLIPLTPQVKVILERLRVLARG-SEYILPGRN-HLTPVS 319 Query: 305 ENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQ 364 N +L + ++GY+ +GHGFR STI+NE + ADAIE QLAH +VR YN A+ Sbjct: 320 NNTLLYALYRLGYKSRMTGHGFRSVASTILNESGFNADAIERQLAHVPENAVRAAYNRAE 379 Query: 365 YLDKRREMMQWWADWLDE 382 Y+D+RR+MM WW+++LD+ Sbjct: 380 YIDERRKMMLWWSEYLDK 397 >UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L9U1_9GAMM Length = 399 Score = 220 bits (560), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 134/387 (34%), Positives = 211/387 (54%), Gaps = 11/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP EKPYRL DG GL+L + +G K+W+ Y++D K+++L +G ++L Sbjct: 3 LTDFKIRGAKPAEKPYRLSDGGGLFLEIRPNGSKLWRYAYRLDSKQRLLAIGSLQDVSLA 62 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR A+ + +G DPV KA+ S N+ + ++WY ++ WS + Sbjct: 63 DARAAMRQAKSQVKLGQDPVLQRKIAKARSEESALNTVAENAEDWYSGAEKSWSASHRDR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + D ILP IG I+++ P +L+++R+ E G A R+ VF +AIV Sbjct: 123 ARRYLDQRILPDIGKWPIREVTPADVLKLLRKAEKAGP-HVAIVTRQTLSSVFEHAIVNL 181 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +P + A+K + A + L T+ G+ V+ IA ++L T +RT Sbjct: 182 RADADPTHPVRRAIKKPPVMHAVAHSAATMGKLLAGLDTYPGNRVTAIAIELLALTFVRT 241 Query: 236 KELRSMLWKNVDF--ENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 KELR+ W N+D+ E+ ++ IDA MK R+ H VP++ + V LL L IT ++F Sbjct: 242 KELRTAKWANIDWEAESPLLKIDAGEMKKRRKHWVPLAPRAVALLRELQEITG-AGTYLF 300 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + D KKP+ AV + +K +G + + SGH FR ST ++E +P+ +++QLAHA Sbjct: 301 PNQRDPKKPMSREAVNMGLKYLGMDEI-SGHDFRATASTWLHEAGYPSAVVDMQLAHAKT 359 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 YNHA++L R +MM WAD L Sbjct: 360 NKTGAAYNHAEFLPDRIKMMDRWADHL 386 >UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea psychrophila RepID=Q6AR70_DESPS Length = 399 Score = 220 bits (560), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 125/395 (31%), Positives = 206/395 (52%), Gaps = 17/395 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 M T+K ++ K+ P RL DG GL V SG K W RY++D K+++ +G+YP ++L Sbjct: 1 MPTLKALQVRNAKD-PCRLSDGLGLSFEVTKSGVKRWLYRYRLDDKQQMCVLGRYPELSL 59 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSN-------------NNSFSAIYKEWYEHKKQV 107 ++AR AR + G +P + ++ + SF I EW E+ K+ Sbjct: 60 EQARKIHREARALVREGCNPARERRRKKQEVISKEKAERDDRSKSFEYIALEWIENNKES 119 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 WS + + +++ G + I P +L IR E+RG++E K +R V Sbjct: 120 WSPSHQQAVLASLRNNVFSAFGNTPVDTITPPDVLRTIRAIENRGSLEIVRKVLQRTNAV 179 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSG-SIVSLIATK 226 FRYAI TGRA YNPA D+ A+K ++ P + ++ + +++ + + +A + Sbjct: 180 FRYAIQTGRATYNPAADMQGALKAKTVEHMPAVFDSELAQLLQDISSNQKIHVTTKLAIQ 239 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA R E+R+ W+ V+ + I A MK R+ H+VP+S Q + +L ++ Sbjct: 240 FTALTACRGGEVRNARWQEVNLDTNEWHIPAERMKMRRAHIVPLSIQALAILHRAGALWG 299 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIE 345 FVF D+ KP+ +NA+ + +GY G + HGFR FS++ +E + ++ IE Sbjct: 300 E-DGFVFPSIRDRSKPMSDNAMGKAFRDMGYRGKATPHGFRSSFSSMAHEQSGFASEVIE 358 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 LAH V+G YN A+YL++RRE++QWW + L Sbjct: 359 KSLAHEEKNKVKGAYNRAEYLEQRRELLQWWGEKL 393 >UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_PSEA7 Length = 395 Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 202/390 (51%), Gaps = 15/390 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT AAKPKE+ YRL D GLYL V +G K W+ R+K+ GK +G YP ++L Sbjct: 1 MLTDAHCRAAKPKEQLYRLNDFRGLYLEVKPNGVKAWRYRFKLAGKGSWFALGDYPSVSL 60 Query: 61 QEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 +ARDK ARK + GI+PV + K+ + N+F A+ KEW K W Sbjct: 61 ADARDKCEEARKLVKQGINPVQNRQVERIKREQDSANTFEAVAKEWLALKD--WEEVTKR 118 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 M + P IG + ++ I P +L+++ + RGA A +A+R +F A+ T Sbjct: 119 RRLDMLQRVVFPSIGKMPVRQITPAHVLDILSKTAKRGAPTVAAEAKRTMSGIFELAVAT 178 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSL---IATKVLRYT 231 RA +P + A+ + ++ L QI K L F +++ +T Sbjct: 179 LRADNDPVWPVRKALPANKTQHKTALTTAQI---GKLLTDFDNHRCGYQVNFCIQLMWWT 235 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 R E W D + + +I A MK R+ H+VP+ Q VE+L L +I+ Sbjct: 236 LARPGEAAEAEWAEFDLDKALWSIPARRMKARREHLVPLPRQAVEMLRRLHAISGD-RMH 294 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 +F GR+D+ KP+ +++ +K +G+ G S HG R ST +NE + DAIE QLAHA Sbjct: 295 LFPGRDDRNKPMSAHSIRQALKALGWSGTYSPHGTRTTGSTRLNEMGYRPDAIEAQLAHA 354 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 SVR YNHA YLD+RREMMQ WAD L+ Sbjct: 355 EPNSVRRTYNHATYLDERREMMQAWADKLE 384 >UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWC6_JANMA Length = 414 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 215/398 (54%), Gaps = 19/398 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59 LT +I+AAKPKEKPY+L DG G+YL + SG KVW++ Y+ + + LT G YP + Sbjct: 8 LTDLRIKAAKPKEKPYQLADGEGMYLEILPSGSKVWRMAYRQENRTTSTRLTFGHYPAVG 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L EAR K +K I G+DP +A++ A++ N+F A+ + W+++K + W A Sbjct: 68 LAEARRKRADTKKQIVEGVDPAQARRVEKAISATAAANTFEAVARMWHQNKLEQWQPRTA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + + D+ P+IG I +++ +L+V+R+ E RGA E A + + C ++FRYAI Sbjct: 128 NNILRRLEQDVFPLIGKRPIAEVKAPVMLDVLRQIEKRGAAEIARRNAQVCSQIFRYAIA 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI--VSLIATKVLRYT 231 G A+ +P P L A+K K + ++P F + L + V+ I +++ T Sbjct: 188 CGIAENDPVPALRGALKPRIKGVHAAILVAELPEFLETLNHNKARMFPVTRILMQLMMLT 247 Query: 232 ALRTKELRSMLWKNVDFENR--IITIDASVMKGRKI------HVVPMSDQVVELLTTLSS 283 +RT EL W VD +N +I M RKI H V + Q L L + Sbjct: 248 FVRTSELTETPWSEVDLKNEQWVIPWQRMKMGKRKINPRKVDHHVFLPKQGWAFLRELRT 307 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADA 343 T ++++F + D KKPI A+L +K++GY G +GHGFR I+ Sbjct: 308 YTGG-NQWLFPNQRDPKKPISNGAILAALKRLGYAGKHTGHGFRSLAKGILKTLGNDISN 366 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 IE QLAH++G + Y+ +L++R+ MMQ +AD++D Sbjct: 367 IERQLAHSSGEAYGASYDRESFLEERKIMMQGYADYID 404 >UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobacteria RepID=B8GNQ7_THISH Length = 422 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 210/389 (53%), Gaps = 11/389 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +L+ +++E +++PY L DG L+LYV SG K+W+ RY++ GK I +GKYP ++L Sbjct: 5 LLSARKVETIPSQKEPYWLKDGGSLFLYVTPSGSKLWRYRYRLGGKPAIYAIGKYPQVSL 64 Query: 61 QEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYAT 114 + AR + AR+ + G+ PV K+ + N N+F + + W Q WS GYA Sbjct: 65 EAARTERDRARELVKKGVHPVVEKRVNISTQLEKNENTFEPVARRWMASNVQ-WSEGYAD 123 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ + ++D+ P +G L + I L VI+ +RGA A R+ C ++F YA Sbjct: 124 QVKRTLENDVFPKVGKLPVSSIRTAHLRPVIKDVAERGAPTVAILIRQLCSQIFAYAAGE 183 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 +P L ++K R ++ P LP +IP F + +G V++IA +++ T +R Sbjct: 184 ELCDSDPTALLKRSVKRPRVRHHPPLPWQEIPKFLSRVDD-AGYRVTVIALRLMALTYVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T ELR W D ++ + T+ A MK R H+VP+S Q + LL L ++T + +F Sbjct: 243 TAELRKAHWSEFDLDSAMWTVPAGRMKMRDPHIVPLSKQAIVLLKELHTLTGG-GKVLFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA--N 352 G + + V++++GY G S HGFR +T++ +P + +++QLAH+ Sbjct: 302 GFRKPGTVMSATTLNKVLERMGYGGQFSSHGFRSTATTLLGLLSYPENRVDLQLAHSKRK 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLD 381 S R Y+H +Y+ R+ +MQ WAD LD Sbjct: 362 KDSSRAPYDHTKYIASRKIIMQDWADILD 390 >UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriaceae RepID=Q0P7K9_ECOLX Length = 423 Score = 217 bits (553), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 124/401 (30%), Positives = 222/401 (55%), Gaps = 23/401 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +I + KP +KP+++ D +GLYL V G ++W L+Y+I+GKE + +G YP ++L Sbjct: 3 LNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN----NSFSAIYKEWYEHKKQVWSVGYATELA 117 +AR + RK +++ I+P + + A + F ++ EW+ KK+ WS A + Sbjct: 63 DARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKK-WSQNTADRVL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + P IG L + +++ +E+++ E++G +E A+++R+ + RYA+ G Sbjct: 122 ARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEVASRSRQHLSNIMRYAVHQGLI 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF-SGSIVSLIATKVLRYTALRTK 236 + NPA +L ++++P LP +++P + + ++ G ++ +A + + +R+ Sbjct: 182 EINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLTLHVFIRSS 241 Query: 237 ELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSI 284 ELR W ++F NRI TI A+ K R H+VP+S+QV+ +L + I Sbjct: 242 ELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKEI 301 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFR-HEFSTIMNEHEWPA 341 + E VF G +D KP+ EN + ++Q+GY + GHGFR S +M W Sbjct: 302 SGGY-ELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ 360 Query: 342 DAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 DA+E Q++H +VR Y H A++++ R +MMQWW+D+LD Sbjct: 361 DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLD 401 >UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C8U1_ACAM1 Length = 399 Score = 217 bits (553), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 136/391 (34%), Positives = 204/391 (52%), Gaps = 12/391 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q+ AKPK YRL DG GL+L + +G K W+ RY+I GKE ++G YP + L Sbjct: 6 LTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYRIQGKESTFSIGSYPELGLG 65 Query: 62 EARDKAWTARKDISVGIDP-VKAKKAS-----SNNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR K AR+ ++ G++P +AK+ + N+F + EW+ K WS Y Sbjct: 66 EARAKHLEARRLVAQGLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSESYRGI 125 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D+ P +G + +I ++L VIR E RGA A+K V YA+ TG Sbjct: 126 VRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEARGANALAHKCLSIVRMVLGYAVATG 185 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 R N DL A+ K+ + ++ + +A + GS+V A ++ T +R Sbjct: 186 RCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGALTFVR 245 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT-KPVSEFVF 293 ELR+M W +++ + S K H+VP++ Q +E+L TL IT S +VF Sbjct: 246 PGELRTMQWSQINWNTKEWRFQVS--KTETDHIVPLATQAIEILQTLQLITGNGTSRYVF 303 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEH-EWPADAIEVQLAHA 351 N + + NAVL ++ +G E SGHGFR T++ E + + IE QLAHA Sbjct: 304 PSANSMTRHMSNNAVLAALRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEHQLAHA 363 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 G + YN ++L++RREMMQ WAD+LDE Sbjct: 364 VRGPLGRAYNRTEFLEERREMMQAWADYLDE 394 >UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria RepID=Q2N8A1_ERYLH Length = 409 Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 135/394 (34%), Positives = 215/394 (54%), Gaps = 13/394 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +LT I AK K Y+L D +GL+L V +G K+W+++Y+IDG+EK L +G+YP + L Sbjct: 2 VLTDVGIRKAKAGPKAYKLSDSSGLFLLVERTGGKLWRMKYRIDGREKKLAIGRYPEIGL 61 Query: 61 QEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR + AR+ ++ G DP KA+ N+F+++ E+ E +K S +A Sbjct: 62 AEARRRRDAAREQLAQGKDPSREKQRQKARAKLGAENNFASLAAEFCEKRKHDGSRAWAP 121 Query: 115 ELAKMFD---DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 AK + + IG L I DIEP +L +RR E +G +E A + + G VFRYA Sbjct: 122 ATAKRCEYLLSVLNSSIGHLPIADIEPADILTAVRRIESKGKLESAKRTLQLAGSVFRYA 181 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 + T R K +P DL A+ ++ L +A+ + G ++ +A ++ + Sbjct: 182 VATARLKSDPTRDLRGALMNPTVTHYGAVLDPAGAGELLRAIDGYEGQPITKLAMQLAPH 241 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 +R ELR W +DF+ + TI AS K RK H+VP+S Q + +L +T P Sbjct: 242 VFVRPGELRHAEWSEIDFDEALWTIPASKTKMRKDHLVPLSRQAIAILEMAHRLTGP-DG 300 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEH-EWPADAIEVQL 348 +VF +K+P+ +N + ++++GY E + HGFR ST++NE +W DAIE L Sbjct: 301 YVFPSVRTRKRPMSDNTINAGLRRLGYATDEMTAHGFRAMASTLLNESGKWNPDAIEGAL 360 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 AH + VR Y+ + +R +MM+WW+D+LD+ Sbjct: 361 AHGDSDKVRAAYHRGAHWKERVKMMKWWSDYLDQ 394 >UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Sinorhizobium phage PBC5 RepID=Q8W6M6_9CAUD Length = 433 Score = 217 bits (552), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 139/400 (34%), Positives = 213/400 (53%), Gaps = 32/400 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT KQI+ AK +K Y+L DG GL L+V +G K W+LRY+ DGKEK L +G YP ++L Sbjct: 4 LTDKQIKNAKKADKDYKLADGGGLNLFVLSTGTKSWRLRYRFDGKEKTLVIGNYPDVSLA 63 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + A++ + G DP KK ++F + +EW++ +K W +A++ Sbjct: 64 DARGEREAAKETLKSGRDPNVVKKIEKAIGKQQAADTFEVLAREWHKLQKPTWVEKHASD 123 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +D+ PIIG + I+DI+ +L V+R E R A E A + R+R +F Y I +G Sbjct: 124 VLDSLVNDVFPIIGQMPIRDIDAPTVLGVLRLVEQRDAKETARRIRQRISAIFVYGIASG 183 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKA----LATFS--GSIVSLIATKVLR 229 RA +PA + AM +K P I +KA +AT+ V+ + ++L Sbjct: 184 RASEDPAAVVRGAMAPMKKGRQP-----AITNLDKAREMLVATWKTPSHPVTKLGLRLLT 238 Query: 230 YTALRTKELRSMLWK---NVDFENRIITIDASVMK--------GRKIHVVPMSDQVVELL 278 TA+R L S W VD + + I A+ MK + H++P+S + +E + Sbjct: 239 LTAVRPGTLISTPWTELDEVDESDPVWVIPAARMKLLLQHKDDETRDHLIPLSKEAMETI 298 Query: 279 TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 T L S+T FV KP+ ENA+ ++ + GY HGFR FST+MNE Sbjct: 299 TVLRSLTG-RGPFVLPNGRHAHKPMSENALGYLLNRSGYHHKHVPHGFRSTFSTVMNE-R 356 Query: 339 WPAD--AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWW 376 +PAD I++ LAH V G YN A++L++R+E+ Q W Sbjct: 357 YPADRQVIDLMLAHTPKDKVEGAYNRAEHLERRKELAQIW 396 >UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_SALA4 Length = 449 Score = 216 bits (551), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 134/402 (33%), Positives = 212/402 (52%), Gaps = 24/402 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L +QIE AKPKEK Y++ DG GLYL V G K W+++Y+ D KE L G YP +T Sbjct: 32 LNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPTIT 91 Query: 60 LQEARDKAWTARKDISVGIDP-VKAKKASSNNNS---FSAIYKEWYEHKKQVWSVGYATE 115 L EAR K A+K +S GIDP V+ K A + F I ++W+ WS ++ Sbjct: 92 LAEARAKRDAAKKLLSQGIDPKVEQKGAQAEIEGAYLFETIARQWHA-SNLTWSEDHSHR 150 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + I P IG ++ + + QLL I+ + G + A + +R + R+ + Sbjct: 151 VLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVNAIMRFGVQND 210 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NPA D+A A+ + + P LP +IP F + L+ + G +++ +A ++ T +R+ Sbjct: 211 LLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLLTFIRS 270 Query: 236 KELRSMLWKNVDFENRIITIDA------------SVMKGRKIHVVPMSDQVVELLTTLSS 283 E+R W V+FE TI MK + H+VP+S Q ++ L + Sbjct: 271 SEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKRLHA 330 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEHE-WP 340 ++ E +F +D KK + EN V ++ +GY+ GHGFR ++E + W Sbjct: 331 LSGK-GEVIFPSDHDPKKVMSENTVNSALRVMGYDTKTEVCGHGFRTMARGALSESKLWN 389 Query: 341 ADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 DAIE QL+H +V+G Y H ++YL++RR M+QWWAD++D Sbjct: 390 DDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYID 431 >UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepID=C9NQJ4_9VIBR Length = 415 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 208/392 (53%), Gaps = 15/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT +I+++KPK+K Y L DG+GL L + +G K W L Y + K L++GKYP ++ Sbjct: 8 LTPTKIKSSKPKDKEYNLFDGDGLRLRIKPNGSKHWILNYYRPSNRKRANLSLGKYPDLS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L AR A++ ++ GIDP + +K +++ ++F + +W+E KK + YA Sbjct: 68 LANARKMTLEAKELLAQGIDPQEERKRHQLEQKANHEHTFINVTTKWFEIKKDDVTPDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + I P + + ++DI Q++E+++ E +G++E + +R EV YA Sbjct: 128 VDIWRSLELHIFPQLSDVPVRDITAPQVIELLKPIEAKGSLETVKRLAQRLNEVMNYATN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G + NP + A K +K+N L ++P A+A S + + +T Sbjct: 188 CGLVQANPLTGIKAAFKKPKKENMAALTPAELPELMGAIANASIKRTTRCLIEWQLHTMT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS---E 290 R E W+ +D++ ++ TI MK R+ H +P+++Q++ELL + KP+S E Sbjct: 248 RPSEASGARWEEIDWDEKVWTIPPERMKKRREHRIPLTEQMLELL----EVIKPISGHRE 303 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 F+F D KKP + +K++G+ G HG R ST +NE + D IE LAH Sbjct: 304 FIFPSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFEPDLIEAALAH 363 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 A+ VR YN YL++RR MM WW+ ++E Sbjct: 364 ADDNQVRSAYNRTDYLERRRPMMCWWSGHIEE 395 >UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46Z79_RALEJ Length = 418 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/384 (34%), Positives = 201/384 (52%), Gaps = 18/384 (4%) Query: 18 RLLDGNGLYLYVPVSGKKVWQLRYKIDGK--EKILTVGKYPLMTLQEARDKAWTARKDIS 75 RL DG GLYL + SG K W+++Y+ G E +LT G YP + L AR++ AR ++ Sbjct: 25 RLRDGGGLYLELLPSGAKKWRMKYQRPGSKSENLLTFGDYPAVGLSAARERREEARAQLA 84 Query: 76 VGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIG 129 VG DP KA A + N+F A+ +EW +H+ WS YA + ++ + D+ P +G Sbjct: 85 VGTDPALARDLAKATVAEAARNTFRAVAEEWLKHRHDTWSASYAQKTKQLLERDLYPDLG 144 Query: 130 GLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAM 189 I I P LL V R+ E RGA E +A G++F+YAI TGRA + + + + Sbjct: 145 QHPIASITPAFLLTVARKIEARGAYEMPRRALVTAGQIFQYAIGTGRASIDASAGMVAQL 204 Query: 190 KGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDF 248 K K++P + Q+P + + ++G ++ A K+ T +R ELR W +D Sbjct: 205 KPRPPVKHYPHVADTQLPDLLQRIDRYTGRPETIAAVKLAVLTFIRGGELRYAEWSELDL 264 Query: 249 ENRIITIDASVMKGR-------KIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKK 301 E + + MKGR HVVP+S Q + LL L T + +F G K Sbjct: 265 EKAEWHVPSGRMKGRLWHKLSGTPHVVPLSRQTIALLEDLKQYTGHYA-LLFPGAVSVLK 323 Query: 302 PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIY 360 P+ A+ V IG++G ++ HG R ST++NE + IE QL+H Y Sbjct: 324 PVTGEAMNKVFHSIGFKGQQTVHGLRGLASTLLNESGLFDPRVIEAQLSHKETNKTIAAY 383 Query: 361 NHAQYLDKRREMMQWWADWLDEKV 384 NHA+YL +RR +MQWWAD++D++ Sbjct: 384 NHAKYLPERRRVMQWWADYIDQRA 407 >UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M393_9ENTR Length = 420 Score = 214 bits (544), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/399 (32%), Positives = 209/399 (52%), Gaps = 21/399 (5%) Query: 7 IEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDK 66 I+ A +EKPYRL D GLYL + SG ++W R++ +GK+ + G YP +T+ +AR K Sbjct: 8 IQNAISQEKPYRLADSLGLYLVISNSGSRLWYFRFRFNGKQNRIAFGPYPQITIADARRK 67 Query: 67 AWTARKDISVGIDPVKAKK----ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDD 122 ARK ++ GI P + +K ASS +F I W+ WS G+A ++ Sbjct: 68 RDAARKLLTSGISPSEHRKSEKAASSKTRTFQHIALAWHSSCLNRWSEGHANKILVCLQR 127 Query: 123 DILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPA 182 + P +G +I IE L E+I+ ++G + A++ R+ ++ R+++ G YNPA Sbjct: 128 YVFPYVGKKDIAKIETFHLAELIKEVNNKGVHDVASRIRQYLTKIMRHSVQQGLIHYNPA 187 Query: 183 PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSML 242 DL D + +++P LP + + + G + +A ++ + LR ELR Sbjct: 188 LDLEDIITPVVVQHYPALPLRSLSELLIKIDDYKGQELIRLALELSLHVFLRASELRFAR 247 Query: 243 WKNVDFENRIITIDASVM---------KGRKI---HVVPMSDQVVELLTTLSSITKPVSE 290 W + + I TI A +G K+ H+VP+SDQ +++L + I+ SE Sbjct: 248 WDEFNMKIHIWTIPAKRKAVDGVRFSDRGSKMKEEHLVPLSDQAMKILERIKKISGE-SE 306 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEH-EWPADAIEVQ 347 FVF + +P+ EN + ++ IGY + HGFR + +NE +W DAIE Q Sbjct: 307 FVFHSIRNLNRPMSENTINKALRVIGYCTKNDVCAHGFRTMACSALNESGKWSKDAIERQ 366 Query: 348 LAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 ++H + +VR Y H A+YL++R EMMQWW+D+L E Sbjct: 367 MSHKDRNNVRAAYLHKAEYLEERFEMMQWWSDYLSTTRE 405 >UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SUB2_ACILW Length = 396 Score = 214 bits (544), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 124/378 (32%), Positives = 198/378 (52%), Gaps = 10/378 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + A+PK+K YRL D +GL L + G+K W +R + G+ K ++G YP ++L+ Sbjct: 19 LTDTECRKAQPKDKQYRLSDLHGLSLIITTKGQKYWNVRVTVHGERKSESLGPYPDLSLK 78 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 +AR+ A+ + S + K F + ++W+ ++K+ WS + + + D Sbjct: 79 KARELAYELKHRYSRSVLHEDLKPY------FEEVAEDWFNNQKETWSSKHISNVRASLD 132 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 + + + I I+ ++L++I++ E RG++E A + RCG V +YAI G NP Sbjct: 133 E-LYIALANKRINQIQAPEILQIIKKIEARGSLEIAKRTLSRCGMVMKYAIAHGYRYDNP 191 Query: 182 APDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSM 241 A DL A+K R KN L A ++P F + + + + A ++ T +R EL Sbjct: 192 AGDLVYALKNKRVKNLASLSASEMPEFLRRIKAYPADAQTHHAIVLIMLTGVRVSELLQA 251 Query: 242 LWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKK 301 W+ D E R I MK R H VP++D ++ L L E +F R + K+ Sbjct: 252 RWEEFDLEGRKWDIPEERMKNRLSHRVPLTDMMIAELQALRLTHN--QELLFPHRLNNKE 309 Query: 302 PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIY 360 P+ ++L VIK+ GY G + HGFR FST++NE + DAIE QLAH +R Y Sbjct: 310 PMRSESILAVIKRSGYAGRMTTHGFRSLFSTVVNESNLFNPDAIERQLAHVPQNRIRSAY 369 Query: 361 NHAQYLDKRREMMQWWAD 378 N AQY D+R +MQW+ + Sbjct: 370 NRAQYWDERVRLMQWYGE 387 >UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2J0_9DELT Length = 420 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 128/402 (31%), Positives = 209/402 (51%), Gaps = 22/402 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI----LTVGKYPL 57 LT Q+ K ++K RL DG GLYL V SG K W+ +Y+ G+ KI L++G YP Sbjct: 3 LTDAQVRNVKAEDKTRRLFDGGGLYLEVAPSGGKWWRFKYRFPGQGKIQEKRLSLGTYPG 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNN----SFSAIYKEWYEHKKQVWSVGYA 113 + L+EAR K R+ I+ GIDP ++++ + SF A+ + W+ + W+ ++ Sbjct: 63 VGLKEARAKRDEMRRQIAQGIDPANLRRSTRGSGALAGSFEAVARLWHRNNSTDWAPSHS 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 T L + + + P +G + DI L+ V+ R ++ G E A + + CG+VFRYA+ Sbjct: 123 TRLIRRLEAHVFPYLGNRPVGDITAPDLMNVLERIKNSGHTETARRIQTICGQVFRYAVQ 182 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATKVLRYT 231 G A+Y+P+ L + KN + PA+ + +A+ + G+ V A ++ Sbjct: 183 KGFAEYDPSSALKGCLGKTTAKNMATITEPAE-VGRLLQAIDEYPGTQVVRCALQLAPLF 241 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMK----------GRKIHVVPMSDQVVELLTTL 281 +R+ ELR+ W D NR I MK G+ H+VP++ Q V++L Sbjct: 242 FVRSGELRNARWDEFDLVNREWKIPVERMKMRQDEKRARQGQVGHIVPLATQAVKILEEE 301 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWP 340 VF G + + I + + ++++GY G E + HG RH ST+++ + Sbjct: 302 LRPLTGRCALVFPGLRSRDRAISDATLTNALRRMGYTGDEMTIHGLRHMASTLLHGLGFQ 361 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + IE QLAH + +RG+YN A YL++RR MMQ WAD+L + Sbjct: 362 SLVIERQLAHKDRNRIRGVYNQADYLEERRRMMQSWADYLGQ 403 >UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7HXY0_THIIN Length = 392 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 200/387 (51%), Gaps = 8/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LTVK ++AAKP+E+PY+L DG GLYL+V +G K W+ Y+++GK++ T G+YP MTL Sbjct: 3 LTVKAVDAAKPQERPYKLTDGGGLYLFVAPTGLKSWRANYELNGKQRTRTYGRYPAMTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVG-YATELAKMF 120 +AR+ A+ S + + +F AI ++W + K S G + ++A Sbjct: 63 QAREAHTQAK---STPAEAATVTPIAKVAPTFKAITEQWLKIKLPSLSNGKHQGQVAGTL 119 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG L I I +L+EV++ + G +E A++ R VF YA G + + Sbjct: 120 ERFAYPAIGKLPIDQIPRTKLVEVVQAVQKGGRVETAHRVAGRIAAVFDYAQDVGYIESH 179 Query: 181 PAPDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 A L ++ + KK +P + A A+ + + L ++L T +R E+R Sbjct: 180 GAAGLVRVLQPRKVKKPMASIPPGEAGALLAAIDGYEEPVTRL-GLQLLALTFVRVGEMR 238 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 M W + + + + A MK HVVP+S Q +L L +T V Sbjct: 239 GMRWSELREDGTVWVVPADRMKAGLPHVVPLSQQARAVLEQLRVLTGD-RNLVLDSPLRP 297 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRG 358 + EN L + ++GY G + HGFR ST++NE + D IE QLAH +VR Sbjct: 298 GHALSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHRETDTVRA 357 Query: 359 IYNHAQYLDKRREMMQWWADWLDEKVE 385 YN AQYLD+RR +MQWWADWLD + E Sbjct: 358 AYNRAQYLDQRRGLMQWWADWLDRQRE 384 >UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR6_9SPHN Length = 428 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/405 (33%), Positives = 208/405 (51%), Gaps = 30/405 (7%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I++ P +P + DG GL + V +G++ W Y+ K+K +T G YPLM++ Sbjct: 1 MLTDTLIQSIIPAARPIKKADGGGLNICVLPNGRREWCFSYRFHHKQKSITGGDYPLMSI 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA-----SSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR + +S G DP K+ + +F + EW K+ WS YA Sbjct: 61 DRARVWREEMKAALSAGKDPANIKRQLKYEDQAERTTFRQLAYEWMVAKRPGWSDRYAGV 120 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + DI P IG L ++ I P +L ++ EDRGA E A++ R C E+FR+ I G Sbjct: 121 IERRLEADIFPTIGKLSVRSILPRDMLGALKCIEDRGATEMAHRVRAYCSEIFRFGIPDG 180 Query: 176 RAKYNPAPDLADAMK-----GYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 R +P DL M+ +R K +P ++P F AL +GS +S +A + Sbjct: 181 RVLTDPCRDLGTVMRKRAAVTHRSK----IPIKELPHFYAALNADTGSRLSHLALRWTIL 236 Query: 231 TALRTKELRSMLWKNVDFEN-----RIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI- 284 T +RT E R W +FE + I A MK R H+VP+ Q V LL + + Sbjct: 237 TMVRTTETRHAQWS--EFEGLGGPEPLWRIPAERMKMRVEHLVPLPPQAVALLREIKELN 294 Query: 285 ------TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 + +++F ++ I N +L++++++G + HGFR ST++NE Sbjct: 295 VYGKYGNERFGQYLFPVIGNQGDTISSNRMLVLLQRLGVGDKATVHGFRSIASTVLNETG 354 Query: 339 -WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + D IE+QLAH GG VR +YN A+YL RR+M++WWAD+LD+ Sbjct: 355 LFKPDWIELQLAHVPGG-VRAVYNAARYLSHRRQMLEWWADYLDK 398 >UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholderia ambifaria RepID=Q0BEM8_BURCM Length = 414 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/390 (32%), Positives = 203/390 (52%), Gaps = 10/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AK KP +L DGNGLYL V SG K+W+ +Y+I GKE + +G+YP +LQ Sbjct: 3 LTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTSLQ 62 Query: 62 EARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR AR+ + G+ P A+ + + +F A+ EW E K++ W+ + E Sbjct: 63 AARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHFGE 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +M + D P IG ++ I +L ++RR E RG+ A K R+ VF+YA++T Sbjct: 123 ILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYAVITL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA L A+ ++ L +++ A + L + S + IA ++L RT Sbjct: 183 RADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYK-SKRTTIAIRLLMMLFPRT 241 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 EL W+ +D + +K R++H+VP+ Q + LL L I + Sbjct: 242 VELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYILPIL 301 Query: 296 RNDKKKPICENAVL-LVIKQIGYEGLE--SGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 +++K+P A + + + E +GH FR ST ++E W + +E+QL+H + Sbjct: 302 HSNRKRPHMSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSHKD 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 R YNHA+YL +RREMMQ WADWL + Sbjct: 362 KDRTRSTYNHAKYLPERREMMQSWADWLSD 391 >UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteobacteria RepID=INTA_ECOLI Length = 413 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 197/388 (50%), Gaps = 15/388 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT +I+AAKPK+ Y+L DG+GL L + SG K+WQ RY + + + G YP ++ Sbjct: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYA 113 L +AR ++ ++ IDP + +K N N+F + + W+ KK + YA Sbjct: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + DI P IG + I +I+ L++ ++ + RGA+E + +R EV YA Sbjct: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 TG P+ ++ A + +KKN P + DQ+P + T S S+ + T Sbjct: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS---E 290 R E W +DF I A+ MK + H VP+SD + +L + KP+S E Sbjct: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMM----KPLSGGRE 303 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 F+F R +P+ V +K+ G G+ HG R ST +NE +P D IE LAH Sbjct: 304 FIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAH 363 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWAD 378 + VR YN + YL++RR MMQWWAD Sbjct: 364 VDKNEVRRAYNRSDYLEQRRPMMQWWAD 391 >UniRef50_A6QCY9 Site-specific recombinase, phage integrase family n=2 Tax=Proteobacteria RepID=A6QCY9_SULNB Length = 409 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/393 (32%), Positives = 217/393 (55%), Gaps = 14/393 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K+I+AAKPKEK Y+L DG GLYL + G+K W+L+Y+ DGKEK +++G YP +LQ Sbjct: 8 LTDKEIKAAKPKEKEYKLFDGGGLYLSITPKGQKWWRLKYRFDGKEKRISLGVYPNTSLQ 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS---------SNNNSFSAIYKEWYEHKKQVWSVGY 112 +AR + + I+ GIDP + +K + N+F +I EW E ++ + Sbjct: 68 DARQQREDFKTQIAKGIDPSRERKEKKEAVKAEVFKSRNTFKSICLEWIELQRPQMAEAT 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + + D +G + DI L+ + + +DRGA+E A+++ C ++RYA+ Sbjct: 128 LSKYERTLEKDFYAPLGDKSMNDITRHDLITIAQVIQDRGAVETAHRSLGLCNRIWRYAL 187 Query: 173 VTGRAKYNPAPDLA--DAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLR 229 + +N D++ D ++ Y+ K+F + + +I A+ ++G + A ++L Sbjct: 188 QFDKVGHNIVSDISKKDVLRSYKNKSFKTITDEVRIGELMNAIDNYTGEFTTKSALRLLP 247 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 T +R +R W D EN I TI A MK +K H +P++ Q V++L + T + Sbjct: 248 LTFVRPHNIRYAEWSEFDLENGIWTIPAEKMKMKKEHKLPLAPQAVKILKEIYPYTND-A 306 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQL 348 ++VF + K I EN + + +K++ + G HGFR FST+ E ++ ++ IE L Sbjct: 307 KYVFHSPISRLKAISENTLNMALKRLDFGGEIVSHGFRAMFSTLAYESGKFRSEVIEDLL 366 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AH V+ YN A Y ++RE+++W+AD+L+ Sbjct: 367 AHQEANQVKKAYNRAAYDAEKREIVEWYADYLE 399 >UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholderiales RepID=A1WLK0_VEREI Length = 421 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/405 (33%), Positives = 208/405 (51%), Gaps = 23/405 (5%) Query: 1 MLTVKQIE-AAKPKEKP-YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT K + A P +K RL D GLYL V SG K W +Y+ DG+EK L +G YP + Sbjct: 1 MLTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYRFDGREKRLALGVYPDV 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGY 112 L++AR ARK G+DPV ++ +N +F + +E++ KK+ WS+ Y Sbjct: 61 PLKDARTARDDARKQHQRGVDPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLEY 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + DI P +G L ++ I LL+ +RR E RGA E + CG+ FRY I Sbjct: 121 ARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARGARELPHSLLEACGQTFRYGI 180 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TGR N A DL A++ K+ L ++ A+ + G + + +A + Sbjct: 181 ATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSALL 240 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKI-------HVVPMSDQVVELLTTLSSI 284 R +R M W+ VD E + I + MK +K H+VP++ Q V +L L + Sbjct: 241 FQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQPL 300 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEG-LESGHGFRHEFSTIMNEHEW---P 340 T +VF K+P+ EN V + ++++G++ + HGFR T++ EW Sbjct: 301 TG-RGRYVFPAVVSPKRPMSENTVRVALRRMGFDNDTMTPHGFRAMARTLLV--EWLNIS 357 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +D IEVQLAH G + Y+ A+++ +R+ MMQ WAD+LD E Sbjct: 358 SDVIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDALCE 402 >UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria RepID=C1D8D2_LARHH Length = 452 Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/422 (30%), Positives = 218/422 (51%), Gaps = 39/422 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYP----- 56 LT I+ KP++KPY+ DG GLYL + +G K W++ Y+I+GK+K L +G Y Sbjct: 7 LTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNYRINGKQKTLAIGVYCQFALV 66 Query: 57 -----------LMTLQEARDKAWTARKDISVGIDPVK----AKKASS--NNNSFSAIYKE 99 +M+L +AR AR ++ GIDP + AKKA++ + SF+ + +E Sbjct: 67 DDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAYVARE 126 Query: 100 WYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANK 159 W+ W +A + + I P IG + +I +L +R+ E + ++ ++ Sbjct: 127 WHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILDVTSR 186 Query: 160 ARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 R+ ++ RYA+ TGR +NP DL A++ R + P L +++P + + Sbjct: 187 LRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAAKLRP 246 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRI------------ITIDASVMKGRKIHV 267 ++ A + T +R+ ELR W+ +DF+ + + + K R H+ Sbjct: 247 LTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMRTPHL 306 Query: 268 VPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHG 325 VP+ Q + L + +IT E VFAG +D KP+ E+ V + +K++GY+ GHG Sbjct: 307 VPLCQQALALFREVHAITGRF-ELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVCGHG 365 Query: 326 FRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEK 383 FR + ++E ++ +AIE Q++H SVR Y H A++L +RR+MM WWAD+LD + Sbjct: 366 FRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFLDAQ 425 Query: 384 VE 385 E Sbjct: 426 RE 427 >UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V414_SPHWW Length = 417 Score = 207 bits (527), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 132/392 (33%), Positives = 201/392 (51%), Gaps = 12/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI AAK +L DG GL L V SG KVW+L+Y+ +GK+K L +G +P + + Sbjct: 3 LTHIQIAAAKASNGALKLSDGRGLTLVVQPSGSKVWRLKYRYEGKQKTLHLGHWPKVGIS 62 Query: 62 EARDKAWTARKDISVGID--------PVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 EAR + ARK I G D PV AK NSF A+ +EW E ++ Sbjct: 63 EARIRREDARKLIEEGTDPALVKRFGPVAAKVKIVAGNSFRAVAEEWLEKCEREGLSQVT 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + D P +G I+ I P+ L V+++ E G +E A + R +FR+A+ Sbjct: 123 LNKIRWLLDKAYPALGSKPIEVIRPLDALAVLKKLEAEGILESARRLRSVLSRIFRFAVA 182 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGR + + A DL A+ + KN + A + +A+ +SG ++ IA + + Sbjct: 183 TGRIERDVAADLRGAIATPKGKNLAAITTAREAGVLLRAIENYSGHEITAIALECSAHLF 242 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R ELR W +D + I I K R+ H VP+S Q++E L L +T +++ Sbjct: 243 VRPGELRQAEWPELDADEAIWAIPPEKTKMRRPHWVPLSRQMMEKLHRLHDLTGG-GKYL 301 Query: 293 FAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAH 350 F + P+ EN V L ++++G+ + + HGFR +T++NE +W DAIE QLAH Sbjct: 302 FPCLGNDDMPMSENTVNLALRRLGFGQDQMTAHGFRAMAATLLNESGQWHPDAIERQLAH 361 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 VR Y +Y +R MMQWW+D ++E Sbjct: 362 IETNEVRRAYTRGEYWPERVRMMQWWSDHIEE 393 >UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LIX3_RHOVA Length = 392 Score = 206 bits (525), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 205/383 (53%), Gaps = 9/383 (2%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARD 65 +I KP E+ ++L D +GLYL V +G K+W+L Y+ GK K L +GKYP + L ARD Sbjct: 7 KIRTTKPTERDFKLSDADGLYLLVRPNGSKLWRLNYRHLGKNKTLAIGKYPDIALSTARD 66 Query: 66 KAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 K AR+ ++ G+DP K+ + N+F A+ +E+ + S G + + Sbjct: 67 KRAEARRLLAEGVDPSYRKQVEVAKAKVAAANTFEAVAEEYLASLARDRSEGTVRANSHI 126 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + P++G I ++ P ++LE ++ EDRG ++ A++AR G+VF+ A ++ RA Sbjct: 127 LRKKVYPLLGRRPIAELRPHEILEALQSIEDRGQVDMAHRARTLIGKVFQLAALSDRAPT 186 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPA-FNKALATFSGSIVSLIATKVLRYTALRTKEL 238 +P L +K +R +N + ++Q A + + T+ GS A L +T +RT EL Sbjct: 187 DPTVVLRGRLKSWRVQNRASVTSEQTFAPLLRRIDTYEGSPNVRAAMLFLAHTFVRTVEL 246 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W +D E+ + I MK + H VP++ +L ++ + +++F + Sbjct: 247 RFATWSEIDLEDGVWRIPEERMKMGRPHDVPLTASTRAILRDMAKFRR--GDYIFVSAHV 304 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRG 358 K + + + +K IGY+G + HGFR S+I+NE + +D IE+QLAH +VR Sbjct: 305 GKSVLGDGTLRKAMKSIGYQGRMTPHGFRSSASSILNERGYRSDVIEMQLAHVEKNAVRR 364 Query: 359 IYNHAQYLDKRREMMQWWADWLD 381 YN Y ++R MMQ W++ +D Sbjct: 365 AYNRTLYWNERVSMMQDWSNLVD 387 >UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacteria RepID=Q3JN19_BURP1 Length = 462 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/390 (32%), Positives = 206/390 (52%), Gaps = 21/390 (5%) Query: 7 IEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDK 66 + AKP++KPY+L DG+G++L V +G K W+L Y+ GK+K L +G YP ++L AR + Sbjct: 65 VRNAKPQDKPYKLTDGDGMFLLVQPNGGKYWRLAYRYLGKQKTLALGVYPEVSLALARQR 124 Query: 67 AWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 AR+ ++ G DP + KK + +NSF + W E ++ Sbjct: 125 RAEAREQLAKGADPGETKKADRRAARLAADNSFEVVALAWLEERRPYVEPRQHERTLVRL 184 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 +D+ P +G I DI+ ++L V++R + RGA A++ R G VF Y I G K N Sbjct: 185 KNDVFPWLGKRPIADIDAPEILAVLKRIDSRGARFTAHRIRSEIGRVFVYGIKEGHCKAN 244 Query: 181 PAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA L A+ + +F + PA Q+ +A FSG+ L A K+ +R EL Sbjct: 245 PAASLVKAIPPAQTTHFASITEPA-QVGEMLRAFDGFSGTFPVLCALKLAPMLFVRPGEL 303 Query: 239 RSMLWKNVDFEN---RIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 R W + D E R + V K + H+VP++ Q V++L L ++T ++VF G Sbjct: 304 RKAEWSHFDLEKAEWRYL-----VTKTKTEHLVPLATQAVKILKELHAVTG-SGQYVFPG 357 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEH-EWPADAIEVQLAHAN 352 K++P+ + A+ ++++GY+ +GHGFR TI++E E + IE QLAH Sbjct: 358 ARSKQRPMSDAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHTV 417 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 ++ YN +++ +R MMQ WAD+LD+ Sbjct: 418 PDTLGRAYNRTKFIKERCAMMQKWADFLDQ 447 >UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=Q48NQ4_PSE14 Length = 391 Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 197/386 (51%), Gaps = 10/386 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP + +L D GLYL V G K+W+ R+++ GKE +G YP ++L Sbjct: 3 LTDLKIRQAKPGKTSSKLTDSGGLYLEVTTGGSKLWRYRFRLAGKENTYAIGAYPEVSLS 62 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + AR + G +P KA++ + N N+F + +EW E + + Y + Sbjct: 63 DARTERDAARDLVKSGRNPAHVRQTEKAQQLTENRNTFKIVSQEWIEKRLAQRTQKYRDQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F +D+ P IG L +++I Q+LE+I + R A A R+ VF Y + T Sbjct: 123 IERAFVNDVYPRIGRLPLREITAAQVLEIITAMDRRNATTLALMVRQWISAVFCYGVATL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA + A++ + + ++ + +A+ T+ G ++IA +L +RT Sbjct: 183 RADSDPASAVRGAIRRNEVNHSRPMSLIELREYFRAVKTYGGHRRTVIALYLLPILFVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + + TI A MK RKIH+VP+ + + LL L IT +F G Sbjct: 243 IELRLAEWSEFDLDAALWTIPARRMKKRKIHLVPLPESALALLRELREIT--AGNLLFPG 300 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGG 354 K+PI + ++ + +G H FR ST + E E W +D IE QLAH Sbjct: 301 MRHPKEPISATTLNRALEYMDLKGWHC-HDFRATASTHLYESELWSSDVIEFQLAHVEQK 359 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWL 380 + YNHA YL R+ +MQWW +++ Sbjct: 360 KSKAAYNHASYLPARKALMQWWDNYI 385 >UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophilus RepID=Q4QL03_HAEI8 Length = 419 Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 123/398 (30%), Positives = 204/398 (51%), Gaps = 17/398 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 L++ +I AKPKEK Y L DG GL+L V ++G K+W+ +Y I K ++++G YP ++ Sbjct: 12 LSITEINNAKPKEKDYSLSDGQGLFLLVKMNGSKIWRFQYYKPISKKRTLISLGVYPEIS 71 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L++AR+ R ++ IDP + K + S + KEW KK G Sbjct: 72 LKDAREIRDLYRSLLAKNIDPQDYRLQQEQKAIQERQFTLSEMGKEWLYLKKNEVDTGRL 131 Query: 114 TE-----LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 E + K + + ++G I +I +E ++ E G ++ ++ ++ Sbjct: 132 KEVTFIDIGKRLERHLFKVLGHYSISEISAPLAIEKLKPLERAGKLDTLHRIIGYLNQIM 191 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 Y++ G YN D+ +N P + +Q+P + L + I + A ++L Sbjct: 192 IYSVNRGVINYNATADIGRVFIRPIAENNPTIRPEQLPKLFEDLQNSTLEIETRCALELL 251 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHV----VPMSDQVVELLTTLSSI 284 TA R + + W+NVDFEN ++ I MKGR+ V +P+S Q V +L L + Sbjct: 252 LLTAGRAGAITQLEWENVDFENSLLNIPKEKMKGRQGKVQDFILPLSKQAVTILRLLQKL 311 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI 344 + S+FVF + + ++PI + + +IGY + + HG R FST MNE E+ ++ I Sbjct: 312 NRCNSKFVFPSKKNPRQPISKETPNKALGRIGYRNILTAHGLRSVFSTAMNEAEFNSEII 371 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 EV LAH SVRG YN A+Y+ +R E MQWW ++++E Sbjct: 372 EVCLAHFEYSSVRGTYNKAKYMPQRIEYMQWWGNFVEE 409 >UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHC8_THIDA Length = 425 Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 133/395 (33%), Positives = 208/395 (52%), Gaps = 18/395 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKP +KPY++ D GLYL V +GK W++ Y+ GK K L +G Y ++L Sbjct: 19 LTDTAVKKAKPGDKPYKMADEKGLYLLVNQAGK-YWRMDYRFLGKRKTLALGVYSDVSLA 77 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHK-KQVWSVGYAT 114 AR K AR ++ G DP + +K + + NSF A+ +EW+ K K+ W+ A Sbjct: 78 RARQKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQSTAD 137 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + + + P +G L I ++ QLL ++R+ E+RG A + R CG++FRY + T Sbjct: 138 KTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGVAT 197 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSG-SIVSLIATKVLRYTA 232 GRA+ NPA L A+ + P + + AF + L +G V+ A T Sbjct: 198 GRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAYFALLTF 257 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKI---HVVPMSDQVVELLTTLSSITKPVS 289 +R +E R W+ +D++ + + A MK K H VP+S Q + LLT L ++T S Sbjct: 258 VRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGH-S 316 Query: 290 EFVFA---GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEV 346 ++F G D + I EN V ++ ++GY+G + HGFR +I++E W +A+E Sbjct: 317 PYLFPKVKGYGDAE-VISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAMER 375 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 QL H S Y +++L +RR MMQ WAD D Sbjct: 376 QLDHKETDSTVAAYARSEHLPERRNMMQAWADTCD 410 >UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY10_HALNC Length = 427 Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 137/413 (33%), Positives = 210/413 (50%), Gaps = 36/413 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+A KP+ KPY++ D GLYL+V +G K+W+L Y+ +GK K L +G YP + L+ Sbjct: 3 LTDTAIKALKPESKPYKVTDEKGLYLFVTPAGGKLWRLDYRFEGKRKTLALGGYPDVNLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN-------------------------NSFSAI 96 +AR AR+ I+ G DP + +KA SF I Sbjct: 63 QARVYRDEARQLIANGTDPAELRKAEKTTITESRREEAEAVKIEAMIQAGEALPGSFEEI 122 Query: 97 YKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMER 156 EW S Y ++ ++ P +G + D+ +L+V++R E RG +E Sbjct: 123 GDEWVNMYLADKSEKYRNKVINRLKAEVYPYLGRAPVADVTAPMVLKVLQRIEARGIIES 182 Query: 157 ANKARRRCGEVFRYAIVTGRAK-YNPAPDLADAMKGYRK-KNF--PFLPADQIPAFNKAL 212 A++ ++ G++ RYAI TGR + ++ L A+ K KN P P D P + + Sbjct: 183 AHRVKQNIGQILRYAIATGRRELFDVTMALNKAIAPMPKDKNHAAPTEPKDIAPLL-RIM 241 Query: 213 ATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSD 272 A + GS ++ A + +R ELR M W ++DFE AS K + H+VP++ Sbjct: 242 AGYRGSPITRAALTIAPCVFVRIGELRHMQWADIDFETFEWRYTAS--KTGQEHIVPLAR 299 Query: 273 QVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEF 330 QVV L L +T S +VF G +P+ EN V +K++G + +GHGFR Sbjct: 300 QVVAALIELQPLTGH-SRYVFTGARSDTRPMSENTVNGALKRLGIDTQTELTGHGFRAMA 358 Query: 331 STIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 T++ E H + + IE+QLAHA + YN ++L+ RR+MMQ WAD+LDE Sbjct: 359 RTVLEEVHNFRPEVIELQLAHAVRDPLGRAYNRTKHLETRRKMMQVWADYLDE 411 >UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VQL7_POLNA Length = 413 Score = 203 bits (516), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 123/379 (32%), Positives = 203/379 (53%), Gaps = 19/379 (5%) Query: 21 DGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP 80 DG G+YL V +GK W++ Y+ GK K L +G YP ++L EAR ARK ++ IDP Sbjct: 24 DGGGMYLLVTKAGK-YWRMNYRFAGKRKTLALGVYPAVSLAEARQGRDKARKLLAQDIDP 82 Query: 81 VKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQ 134 AK+ A++ N+F A+ +E++ K WS G+AT+ +M + + P IG L + Sbjct: 83 SAAKQEDRQATATAAANTFEAVAREFHALKAGGWSEGHATKWLRMNELYLFPHIGTLPLS 142 Query: 135 DIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRK 194 I+ LL +R+ E +G + A + G+VFRY + TGR + NP DL A++ + Sbjct: 143 TIKAPTLLAALRKVEKKGILSTAQDLQAMAGQVFRYGVQTGRCESNPGVDLKGALQPHIA 202 Query: 195 KNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRII 253 K+F L + A +A+ ++G +L A K+ R +R+M W +D + +++ Sbjct: 203 KHFAAILDPVEAGAMLRAIDAYTGQPETLAALKLSALFFQRPGNIRAMEWAWIDLDGQML 262 Query: 254 TIDASVMKGR-------KIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICEN 306 TI A MK K H VP++ Q +++L ++ +T +VF G ++P+ + Sbjct: 263 TIPAKSMKSSKHEKANGKPHTVPLARQALDVLKSIKQLTGH-GRYVFPGARTGERPMSDG 321 Query: 307 AVLLVIKQIGYEGLES-GHGFRHEFSTIMNEH--EWPADAIEVQLAHANGGSVRGIYNHA 363 + ++++ Y E HGFR T+M E P D +E QL H G + Y+ + Sbjct: 322 TINAALRRLDYGNNEHVAHGFRAMARTMMAERLSGIPQDMVEAQLGHGKKGPLGSAYDRS 381 Query: 364 QYLDKRREMMQWWADWLDE 382 +YL +R++MMQ WAD+LD+ Sbjct: 382 EYLPQRQQMMQTWADYLDK 400 >UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonadaceae RepID=A1W8P6_ACISJ Length = 413 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 204/399 (51%), Gaps = 19/399 (4%) Query: 1 MLTVKQIEAA--KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT KQ + A P +K R D GLYL V SG K W + DGKE + +G YP Sbjct: 1 MLTDKQCKNAICPPDKKRARFTDSLGLYLEVSPSGSKRWFWKTYFDGKEGRMALGSYPTQ 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGY 112 +L +AR A+ + G+DPV+ +K + S ++F AI EW+ + WS + Sbjct: 61 SLADARKARDIAKLKKADGVDPVQERKLEKLKGSRSGGDTFQAIALEWHGRQVDQWSDTH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + D+ P IG ++ IEPM+LL +++ E+RGAME A++A C +++RY + Sbjct: 121 AGRTKRQLERDLFPWIGDRQMTSIEPMELLATLQKIEERGAMETADRALMLCRQIWRYWL 180 Query: 173 VT-GRAKYNPAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 T G + + L + + YR NFP + + +A+ + GS A + Sbjct: 181 PTAGNTQRDITVGLKNRLTPYRGTNFPAIVEPKRFGELLRAMHVYKGSHTVRTALLLAPL 240 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKI-------HVVPMSDQVVELLTTLSS 283 R LR+M W VD + + TI + MK K H VP+ Q VELL L + Sbjct: 241 LYQRPGNLRAMEWAEVDLDAALWTIPSMKMKRTKTEKEQGEPHAVPLPTQAVELLRNLQA 300 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM-NEHEWPAD 342 +T +VF G+ D ++P+ +N+V + +G+ +S HGFR T++ ++ + Sbjct: 301 LTG-RGTYVFPGQRDHERPMSDNSVRSALYSLGFGTEQSWHGFRASARTMLVDQLDLDPL 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AIE LAHA S YN QYL KR + +Q WA++LD Sbjct: 360 AIEANLAHAVKDSNGRSYNRTQYLKKRYDQVQMWANYLD 398 >UniRef50_Q4K6S7 Site-specific recombinase, phage integrase family n=4 Tax=Proteobacteria RepID=Q4K6S7_PSEF5 Length = 413 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/380 (34%), Positives = 189/380 (49%), Gaps = 11/380 (2%) Query: 11 KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTLQEARDKAWT 69 +P+ K YR LDGNGLY V G K WQLRYK G + +G YP ++ AR+KA Sbjct: 20 EPEAKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSGALAREKAAE 79 Query: 70 ARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQV-WSVGYATELAKMFDD 122 RK IS GIDP++ K+++ + +F A W + K++ + ++ D Sbjct: 80 LRKTISSGIDPLEQKRSAKAAIDAAKTRTFRAAADAWLKAKEEKGLAPSTLNKIRTYLDK 139 Query: 123 DILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPA 182 DILP +G + +I E+ E R A A K R ++F AI G + +P Sbjct: 140 DILPALGDKPLDEITRTDCAELQASIEARDAHNVAEKCRTWINQIFGRAIGLGLTENDPG 199 Query: 183 PDLAD-AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSM 241 L D A + + + P L ++ F AL + + A + +TA R +R Sbjct: 200 SRLRDIAAQAPKTQQHPHLLEPELGEFLTALKNTPSRLTARTAAWLCIWTASRPGMVRLA 259 Query: 242 LWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKK 301 WK D + T A+ MK R+ V P+ Q + L L +T S ++F G K Sbjct: 260 EWKEFDLDKATWTTPAAKMKMRRDFVCPLPHQAIAALKELHCLTG-RSRWLFPGVGAKNP 318 Query: 302 PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYN 361 I EN + V IGY+G GHG RH ST++ EH WP + +E QLAH G + G+YN Sbjct: 319 TISENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQLAHKEEG-ISGVYN 377 Query: 362 HAQYLDKRREMMQWWADWLD 381 AQYL++R MMQW+AD LD Sbjct: 378 KAQYLEQRITMMQWYADHLD 397 >UniRef50_B6BKY5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKY5_9PROT Length = 400 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 138/392 (35%), Positives = 203/392 (51%), Gaps = 18/392 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI+ AK KEK Y L DG GLYL V ++G K W+ RYK + K K +++G YP TL Sbjct: 8 LTETQIKNAKAKEKTYILSDGAGLYLEVNINGGKWWRFRYKYNDKIKKVSLGVYPDTTLA 67 Query: 62 EARDKAWTARKDISV-GIDP----VKAKKASSNNNSFSAIYKEWYEHKKQV-WSVGYATE 115 AR K AR ++ DP V KK +F + EWY + S + T Sbjct: 68 NARRKRDEARNILANDNRDPFIKIVVHKKEEVVQKTFQE-WAEWYITEISTELSDTHITR 126 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT- 174 K F D+ PIIG + DI+ +++++ ++RGA+E A K VF A+ Sbjct: 127 TVKGFKKDVYPIIGSKRMNDIKARDIIKIMHIMKERGAVESARKTFSSINRVFAKALSNF 186 Query: 175 -GRAKYNPAPD--LADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRY 230 NP D L D + + N+P + ++ KA+ ++G +++A ++ + Sbjct: 187 PDEIDRNPTADIKLGDILGAKQTTNYPIITEPKELATLLKAIKEYTGDTSTILALTMIAH 246 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T +R +R W +DF + I AS MK +K +VP+S QV+ELL K S Sbjct: 247 TFVRPINIRLARWDEIDFNTKQWVIPASKMKTKKELIVPLSKQVIELLKE----AKSDSA 302 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHE-WPADAIEVQL 348 VF K P+ +NA++ ++++GY E H FR FSTI +E + D IE QL Sbjct: 303 LVFPSIRSKTSPMSDNALVGALRRMGYSREEIVAHSFRGIFSTIAHEKGIYAHDVIETQL 362 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 AH G SV YN A+YL++R +MMQWW+D+L Sbjct: 363 AHTVGSSVSQAYNRAKYLEERTKMMQWWSDYL 394 >UniRef50_C8NCE3 Phage integrase family site-specific recombinase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCE3_9GAMM Length = 401 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 206/388 (53%), Gaps = 19/388 (4%) Query: 9 AAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLMTLQEARDK 66 AA P + + DG GL L V GKK W+L Y++ G K++ ++ G YP ++L++AR + Sbjct: 11 AAAPDKNVRKYFDGGGLCLQVTSDGKKYWRLYYRMPGSKKQQTVSFGVYPKVSLKQARQR 70 Query: 67 AWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQV--WSVGYATELAK 118 + I+ GIDP A K + N+F+ + K W EH+ +V W + Sbjct: 71 RDEVKLLIARGIDPKLAAKQLRQDRTVALENTFADVAKRWLEHRAEVKKWGKQHQRATRS 130 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR-A 177 M + + P IG + +IEP Q+L V++ + G +E ++K +VFRYA++T R Sbjct: 131 MLERYMYPRIGDYPVTEIEPTQILRVLQELQAAGKIETSHKLLSATTQVFRYAMITIRIC 190 Query: 178 KYNPAPDLADAMKGYRKKNFPF---LPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 KYNPA DL++ + K+ PF +I AL ++GS + ++ R Sbjct: 191 KYNPAADLSELL--VTGKSVPFRHITDPGEIGRLLVALDEYTGSPQARGLARLHPLIFTR 248 Query: 235 TKELRSMLWKNVDFENRI-ITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 E+R M W +DFE R+ D ++ + ++ VP S Q E++ L +T +++VF Sbjct: 249 PTEIRLMRWDEIDFEQRLWRRSDDETVRRKNVNAVPFSRQAWEIIAGLRLVTGR-TDYVF 307 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + + KP A V+K IGY HG+RH ST+++ ++ + +E QL H + Sbjct: 308 CNIH-RNKPFSAGAEGKVLKSIGYHEKIVPHGWRHTASTLLHNQDYDSIWVEKQLGHTDK 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 VRG YNHA YL++RR+M+Q WAD+LD Sbjct: 367 NEVRGTYNHADYLEQRRKMLQEWADYLD 394 >UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SVD1_ACILW Length = 399 Score = 201 bits (510), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 135/395 (34%), Positives = 200/395 (50%), Gaps = 19/395 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTL 60 L+ K + + P+EK YR LDG GLY V SG K WQ RYK +GK + +G YP ++ Sbjct: 11 LSEKTLSSLVPEEKDYRELDGVGLYFLVKKSGVKNWQYRYKNSEGKWAWMGLGAYPQVSA 70 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNS------FSAIYKEWYEHKKQVWSVGYAT 114 Q AR KA +S G + +K+KK F + +EW + K W T Sbjct: 71 QLARQKAREFTSALSKG-ESLKSKKVLLEERKELESFYFENLMREWLDTKSSKWGEATYT 129 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVI----RRFEDRGAMERANKARRRCGEVFRY 170 + K + I+P+ G ++I P + + R +E+ R C + + Sbjct: 130 KAQKSIEKHIIPVFGQGNYKEITPKEWFDFFQGLQRTLGIHTQIEKLVSYVRGC---YDW 186 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 A G+ NP ++ + Y N F+ D++PA K + + I ++L Sbjct: 187 AKFKGKINSNPIEGMSKHLDAYESGNMDFVTVDELPALLKKIRNNKKRAIG-IGLELLMM 245 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 R ELR W+ DF+ + T A + K R+ H VP+S QV+ LLT L SI +P SE Sbjct: 246 LFPRPGELRMAKWEQFDFKKALWTKPAEMTKTRQEHQVPLSKQVITLLTELRSI-QPESE 304 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLA 349 F+F R K I + L + ++GY+G ++ HGFRH STI+N+ IEV LA Sbjct: 305 FLFPSRLSVNKTISDMTFNLALNRLGYKGKQNPHGFRHLASTILNDAFSDQEQVIEVCLA 364 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H G V+G+Y+ +Q+LD+RR +MQWWAD+LDE V Sbjct: 365 HKKKG-VKGVYDKSQHLDERRVLMQWWADYLDELV 398 >UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BVL9_9GAMM Length = 441 Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/404 (30%), Positives = 214/404 (52%), Gaps = 25/404 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTL 60 L+ + AKP+EK Y L DG+GL L++ SG KVW+ +YK +GK+ ++T+G +P ++L Sbjct: 8 LSDSKCTGAKPQEKDYSLYDGHGLILFIRKSGSKVWRFKYKRANGKDGLMTLGNFPALSL 67 Query: 61 QEARDKAWTARKDISVGIDPVK----AKKASSNNNSFSAIYKEWYEHKKQV--WSVGYAT 114 + ARDK ++ GIDP++ K N +F +I +EW+ K W A Sbjct: 68 KTARDKRRELETLLANGIDPIEYSEIQKAKLDNKYNFESIAREWHTAYKNTGRWGTETAE 127 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 K ++ + P +G I I+P +L++VI+ ED G E K R+R +F +A+ Sbjct: 128 RALKNMEEYVFPKLGKKPIDAIKPKELIQVIKSIEDLGYTEVVKKTRQRLTSIFAFAMSK 187 Query: 175 GRAKYNPAPDLADAMKGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G + NPA L D +K K+ P LP +++P LA+ +G ++ + + +T Sbjct: 188 GFIESNPAYGLQDIFILSKKTKHHPQLPLERLPELQAKLASDTGHPITRLCVEFALHTFA 247 Query: 234 RTKELRSMLWKNVDFENRIITIDAS---------VMKGRKI---HVVPMSDQVVELLTTL 281 R+ E+R WK DFEN I TI + +G K+ H++P+S+Q + ++ + Sbjct: 248 RSSEIRFARWKEFDFENAIWTIPPTRDFVEGYKYSHRGAKMKTPHLIPLSNQALAIIKEI 307 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFR-HEFSTIMNEHE 338 + ++ VF D + E+ + ++++GY+ GHGFR + ++ Sbjct: 308 YKYSGH-TQNVFPKNGDPHGFMSESTINKTLRRLGYDTNTEVCGHGFRGMACAALIQSKL 366 Query: 339 WPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 + DA+E Q++H +VR Y H A++L++R+ M+ WW+ +LD Sbjct: 367 FQKDAVEKQMSHQERNNVRLAYTHKAEFLEERKTMLNWWSSYLD 410 >UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombinase phage integrase family protein n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF6377 Length = 393 Score = 198 bits (503), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/387 (30%), Positives = 200/387 (51%), Gaps = 10/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP P +L D GL+L V G K+W+ R+++ GKE +G YP ++L Sbjct: 3 LTAVKIRHAKPGPAPIKLTDSGGLFLEVTPGGNKLWRYRFRLAGKENTYAIGSYPDLSLS 62 Query: 62 EARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + AR+ + +G +P VKA++ S N+N+F + +EW E + ++ Y + Sbjct: 63 DARAERDAARELVKLGRNPAHVRQTVKAQQLSENSNTFKVVAEEWIEKRLANRTLKYRDQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F +D+ P IG +++I Q+L +I + + R A A R+ VF Y +VT Sbjct: 123 IRRAFVNDVYPKIGRFPLREITAAQILVIITQMDKRDATTLALMVRQWISSVFCYGVVTL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA + A+ + + +++ + A+ + G ++IA +L +RT Sbjct: 183 RADSDPAAAVRGAISRKDVNHSRPMNLEELAEYFLAVGKYGGHRGTVIALYLLPLLFVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + I I + MK ++ H+VP+ ++ + LL L S+T +F G Sbjct: 243 VELRLAEWSEFDLDKAIWIIPSGRMKRKRPHMVPLPERAIALLRELRSLT--AGNLLFPG 300 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGG 354 +PI + ++ + G H FR ST + E + W ++AIE+QL+H Sbjct: 301 MKHPSQPISATTLNRALEYMDLRGWHC-HDFRATASTHLYESQLWRSEAIEMQLSHKESD 359 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 + YNHA+Y D+R +MM WW L+ Sbjct: 360 KTKAAYNHAKYWDERSKMMVWWGHRLE 386 >UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enterobacteriaceae RepID=INTB_ECOLI Length = 396 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/377 (32%), Positives = 202/377 (53%), Gaps = 22/377 (5%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAK 84 ++L V +G K W+L+Y+ +GK+K+L +G YP +TL +AR + ARK ++ G+DP K Sbjct: 1 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 60 Query: 85 K----ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQ 140 K S +F + EW+ K+ WS +A + K +D++ +G I +++ Sbjct: 61 KNDKVEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVLKSLEDNLFAALGERNIAELKTRD 119 Query: 141 LLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFL 200 LL I+ E G +E A + ++R + RYA+ +G YNPA ++A A+ +++ P L Sbjct: 120 LLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPAL 179 Query: 201 PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITI----- 255 +IP + +++G ++ A ++ +R+ ELR W +DFE I TI Sbjct: 180 ELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPERE 239 Query: 256 -------DASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAV 308 K R H+VP+S Q + +L + + +F G +D KP+ EN V Sbjct: 240 PIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYG-AHDLIFIGDHDSHKPMSENTV 298 Query: 309 LLVIKQIGYEG-LE-SGHGFRH-EFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNH-AQ 364 ++ +GY+ +E GHGFR S+++ W DA+E Q++H SVR Y H A+ Sbjct: 299 NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE 358 Query: 365 YLDKRREMMQWWADWLD 381 +L++RR M+QWWAD+LD Sbjct: 359 HLEERRLMLQWWADFLD 375 >UniRef50_B4X5T7 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5T7_9GAMM Length = 398 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/387 (31%), Positives = 209/387 (54%), Gaps = 13/387 (3%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARD 65 +I AAKP++K Y + DG G++L + G K W+ +Y+ +GK+K L++G YP +L+ ARD Sbjct: 10 KIRAAKPQDKLYSISDGEGMFLEISPKGGKWWRFKYRFNGKQKRLSLGTYPSTSLKAARD 69 Query: 66 KAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHK--KQVWSVGYATELA 117 K AR+ ++ G+DP + +K ++ N+F+ + +EW ++K + W+ + Sbjct: 70 KRQQARELLASGVDPAQQRKTEKLATETALRNTFAGVAEEWAQNKVRSEKWTPTTEKKRR 129 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 D+ ++P +G I +I +L V++ + AN+ R E+F +A+ TGRA Sbjct: 130 IWLDNGLMPYLGSRPISEITTAELWGVLQHTQKTSGYT-ANRLRGMASEIFNFAMATGRA 188 Query: 178 KYNPAPDLADAMKGYRKKN-FPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NPA L + ++K+ L D++ +A+ ++ + A ++ +R Sbjct: 189 DNNPALPLQGQIAVKKEKHRLAILEPDEVGKMLRAIDGCQAAVTTKAAARLAPLVFVRPG 248 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 ELR W +D + + +I A MK R+ HVVP+S Q V +L + +T S +VF G Sbjct: 249 ELRHAEWSEIDLKKALWSIPAEKMKMRESHVVPLSRQAVAILKEIQPLTGS-SGYVFEG- 306 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGS 355 +PI +N + ++K +GY+G + HG+R T+++E + D IE QLAH+ + Sbjct: 307 TKPGEPISDNTLNKLLKALGYKGKMTQHGWRAIARTLLDEVLDVRVDWIEHQLAHSVRDA 366 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDE 382 YN +L+ R MMQ WAD+LD+ Sbjct: 367 NGRAYNRTSHLEGRIGMMQLWADYLDK 393 >UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepID=Q1QLT5_NITHX Length = 416 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 207/398 (52%), Gaps = 25/398 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I AKP +KP+++ D GL+LYV +G K+W+ RY+ KEK+LT+G YP ++L Sbjct: 6 MLTDTAIRKAKPGDKPFKMADSGGLHLYVSTAGGKLWRFRYRYADKEKLLTIGPYPDISL 65 Query: 61 QEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 +AR A+ + G DP KK +S N+F AI +EWY+ K W +A Sbjct: 66 VDARAARDAAKASLRDGRDPGVIKKLRKLANVTSTANTFEAIAREWYDLNKGQWVERHAD 125 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ + ++ P++G + + DI+ ++L V+R E R A E A + R+R VF YAI + Sbjct: 126 DVLTSLEREVFPVLGNIPVADIKAPEVLAVLRGIEAR-AKETARRVRQRMSAVFVYAISS 184 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPA---FNKALATFSGSIVSLIATKVLRYT 231 GRA +PA + AM K P + D A KA A + L A +++ T Sbjct: 185 GRADADPAATVQKAMAPMVKGRQPAI-TDLDAAREMLGKAEAEKAHPATKL-ALRIIALT 242 Query: 232 ALRTKELRSMLWKN-VDFENRIITIDASVMKGR--------KIHVVPMSDQVVELLTTLS 282 +R L + W D E+ + I A+ MK R + H VP+S Q +E + L Sbjct: 243 VVRPGTLITTPWSEWTDMEDGVWRIPAARMKLRLQHKDDDARDHWVPLSRQALEAVEALR 302 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD 342 ++T F + + ENA+ ++ + GY HG+R FS++MNE +PAD Sbjct: 303 TLTG-RGPIPFPNTRHAHRTMSENAIGYLLNRAGYHHRHVPHGWRATFSSVMNE-RFPAD 360 Query: 343 A--IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD 378 I++ LAH V G YN A +L++RR++ Q WAD Sbjct: 361 KPIIDLMLAHVPKDKVEGAYNRALHLERRRKLAQEWAD 398 >UniRef50_Q0C1T8 Site-specific recombinase, phage integrase family n=2 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1T8_HYPNA Length = 409 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 194/385 (50%), Gaps = 10/385 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I + KP KP R DG L++ V +G K+W+ YK DGK+K++ +G YP ++L Sbjct: 17 LTDLKIRSLKPDGKPRRYTDGGNLFIEVRPNGSKLWRFAYKFDGKQKLMALGTYPEISLA 76 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR+K AR + GIDP++ K + ++FSAI E + ++ G Sbjct: 77 RAREKRAEARALLIEGIDPMQQAKVNKLERQALTEHTFSAIAAELLDKNRREGLAGATLS 136 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 +G L + I+P +L +R+ E G E A + R +VFRYA+ T Sbjct: 137 KKSWLVGIANADLGDLPVTQIKPTHVLVPLRKVESEGNYETARRLRAVISQVFRYAVATA 196 Query: 176 RAKYNPAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA+++P L A+ + + P + ++ +++ + G+I + +++ R Sbjct: 197 RAEHDPTAGLRGALIAPKVTHRPAIVDREKFAGLIRSIWAYDGAIETKAGLQLMALLYPR 256 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W D R TI A+ K R+ H P+S VE+L L ++T +V Sbjct: 257 PGELRLSTWGEFDLRKRTWTIPAARTKMRREHKKPLSGAAVEILKRLHAVTGH-EPYVLV 315 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEH-EWPADAIEVQLAHAN 352 + + KPI EN + ++++GY E + HGFR S+++NE +W DAIE +LAH Sbjct: 316 SQLSRGKPISENTLNGSLRRLGYAKEEMTSHGFRASASSLLNESGKWHPDAIEAELAHMG 375 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWA 377 +R Y+ A Y D+R EM WWA Sbjct: 376 ADQIRKAYHRATYWDQRVEMADWWA 400 >UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IGA6_BORPD Length = 657 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 128/402 (31%), Positives = 211/402 (52%), Gaps = 28/402 (6%) Query: 7 IEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDK 66 + AK K Y L D + L L V +G K W RY GK+K + +G YP ++L+EAR + Sbjct: 22 VRQAKTTGKRYTLYDNDCLSLMVSAAGGKSWMFRYSWLGKQKRMALGGYPALSLREARAE 81 Query: 67 AWTARKDISVGIDPV----KAKKAS--SNNNSFSAIYKEWYEHKKQVWSVGYATELA--- 117 A+ I+ GIDP + + A+ + +F ++ W EH+++ G + L+ Sbjct: 82 RDKAQALIARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQSTLSQIL 141 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++F+ D+LP +G + I DI QLL V+ E R A A K R ++FRYA+V Sbjct: 142 RIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQMFRYALVIAEG 201 Query: 178 -KYNPAPDLADAMKGYRKK--NFPFLPADQIPAFNKALATFSG-SIVSLIATKVLRYTAL 233 + NPA DL D + + + P+L ++P F + L ++ + + ++L T + Sbjct: 202 LEVNPAADL-DVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRLLFLTGV 260 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMK---------GRKI-----HVVPMSDQVVELLT 279 RT ELR + D + I V+K G++ ++VP+S Q +E++ Sbjct: 261 RTGELRLAEPEQFDLDRGFWIIPPEVVKQLQDEMRKAGKRPQDVPPYIVPLSLQAIEIVR 320 Query: 280 TLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEW 339 L + +P +++ + R++ KK I EN + ++ +GYEG +GHG R ST +NE + Sbjct: 321 YLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTALNEIGY 380 Query: 340 PADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 P ++ QL+H++ V YNHA+Y++ RR MMQ WAD LD Sbjct: 381 PKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLD 422 >UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria RepID=B1Y3M2_LEPCP Length = 433 Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 125/393 (31%), Positives = 197/393 (50%), Gaps = 31/393 (7%) Query: 18 RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVG 77 RL DG+GL L V +G W+ RY+ GKE +L++G YP +L AR + AR+ ++ G Sbjct: 27 RLTDGDGLRLDVQPTGSAWWRWRYRFGGKEGMLSLGTYPDTSLSAARGRRDEARERLAAG 86 Query: 78 IDPVKAKK------------------ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 I+P +A+K +F +EW+ WS G+A ++ + Sbjct: 87 INPSEARKDDKAAQALKAEAARLAAAGLPGPGTFEHAAREWHARMAPSWSEGHAGKVLAL 146 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 +D+ P IG + ++ P +LL+ RR E RGA+E A +A + G VFR+ + G Sbjct: 147 LVNDLFPFIGTSALAELTPPELLKHARRIEARGAVETAYRALKAAGAVFRHGVQNGYCDS 206 Query: 180 NPAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +P DL A+ ++ + PA ++ +A+ + G+ V A + LR E Sbjct: 207 DPTRDLKGAIVLPVPEHRAAITDPA-RLGELLRAIDGYQGTPVVRSALALAPLVFLRPGE 265 Query: 238 LRSMLWKNVDFENRIITIDASVMKGR-------KIHVVPMSDQVVELLTTLSSITKPVSE 290 LR W D + + TI A+ MKGR HVVP++ Q +L L +T + Sbjct: 266 LRKAEWAEFDLDAAVWTIPAARMKGRLKAKLNGPDHVVPLAPQAAAILRDLQPLTG-AGK 324 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEH-EWPADAIEVQL 348 +VF +P+ +N VL ++++G++ E +GHGFR TI E + +E QL Sbjct: 325 YVFPNPLTPDRPLSDNGVLSALRRMGFDKDEMTGHGFRATARTIAAERLKIDPVVLEAQL 384 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AH ++ YN QYLD+RR+MM WAD+LD Sbjct: 385 AHVVADALGRAYNRTQYLDQRRDMMTRWADYLD 417 >UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJJ0_ACIJU Length = 406 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/403 (31%), Positives = 205/403 (50%), Gaps = 24/403 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ +I+ KP+EK YR+LD LY+ V +GKKVW+L+Y + KE +++G+YP ++L Sbjct: 1 MLSDTKIKNLKPQEKMYRILDAERLYIEVRPTGKKVWRLKYTLHSKEGTISLGEYPSVSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR K + + GI+PV+ K+ +N+N+F AI +E+ + S Y Sbjct: 61 AEARKKKEEIKVLLKDGINPVQEKRKLHQENLIANSNTFKAIAEEYIVEGMKYKSKDYID 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEV-------IRRFEDRGAME-RANKARRRCGE 166 + + + DI IG I+++ +L + +R+ G E AN+ R Sbjct: 121 QFKRSMEKDIYKAIGHKPIREVTSADILSILKNTITRVRKLSHYGTGEAAANQNRLFISL 180 Query: 167 VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 V +YAIVT RA+ +P + +A++ ++ L D+ L + G+ A Sbjct: 181 VMKYAIVTLRAENDPTYAVKNAIESPETEHARPLDKDERIRLRTRLELYGGTTTVRNACL 240 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK--------IHVVPMSDQVVELL 278 + YT LR E+R M W VDFE R+I + + ++ IH+VPMSDQ+ LL Sbjct: 241 AMMYTMLRASEIRRMQWSYVDFEERLIEFPKASRRRKQERSNKKNHIHLVPMSDQLFALL 300 Query: 279 TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 I++ +VF+ + + + + IG + + H FR ST++NE Sbjct: 301 KEQFEISQ-YQTYVFSAPFKNDEMLARTTLNRALVFIGMPEV-TTHDFRATASTLLNEKG 358 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + D I QLAH R YNHA+YL+ RR+M+Q WAD +D Sbjct: 359 YKPDWINKQLAHVEENKTRATYNHAKYLESRRKMLQDWADIVD 401 >UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobacteria RepID=B7MX56_ECO81 Length = 419 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/392 (30%), Positives = 194/392 (49%), Gaps = 16/392 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT QI+AA+P +K Y L DG GL+L V SG K+W+ Y D K +L+ G ++ Sbjct: 14 LTTVQIKAARPAQKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSFGSLEDVS 73 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHK-KQVWSVGY 112 L +AR + R IS G DP + +A N+F + WY+ K Q + Sbjct: 74 LADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKISQNLAPNT 133 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + D + P IG I + + +EV+ ++RG +E + +R EV YA Sbjct: 134 IKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVNEVMDYAA 193 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 +G NPA ++ A KK+ P + +Q+P +AL+ + + + + T Sbjct: 194 NSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLIEWQLLTV 253 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE-- 290 R E S W ++ + + TI A MK R+ HV+P+S Q + +L + KP+S Sbjct: 254 TRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAM----KPISHHR 309 Query: 291 -FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 +VF D ++P+ ++++G+ G+ HG R FST NE + D IE LA Sbjct: 310 NYVFPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEAALA 369 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 H + VR YN + Y++KR +M+WW ++++ Sbjct: 370 HVDTNEVRRAYNRSNYIEKRIVLMRWWGEFVE 401 >UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaproteobacteria RepID=Q167M4_ROSDO Length = 409 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/395 (32%), Positives = 203/395 (51%), Gaps = 20/395 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ +I K ++K Y++ D + LY+ V +G K+WQ++Y++DG+EK L++G YP ++LQ Sbjct: 17 LSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDGREKTLSIGAYPAVSLQ 76 Query: 62 EARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIY-----KEWYEHKKQVWSV 110 +AR AR I+ G DP + K K ++ +F I K+ E K + Sbjct: 77 QARKSRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKATLD 136 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 A L K+ + D G I I +L +R+ E +G E A++ R R G VFRY Sbjct: 137 KTAYHL-KLANHD----FGKKPITAITAPMILRTLRKVEAKGNYETAHRLRARIGSVFRY 191 Query: 171 AIVTGRAKYNPAPDLADAM-KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 A+ +G A+ +P L DA+ + R+ A + + F G + + IA ++L Sbjct: 192 AVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQVTTRIALQLLA 251 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 A R ELR W D +++ I A MK R+ H VP++DQ + LL L +T S Sbjct: 252 LLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGE-S 310 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHE-WPADAIEVQ 347 E++F +P+ EN + ++++GY G E + HGFR FST+ NE W DAIE Sbjct: 311 EYLFPSLRSWHRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIERA 370 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH VR Y + ++R ++ WWA LD+ Sbjct: 371 LAHEERNEVRRAYARGAHWEERVKLSDWWAGRLDD 405 >UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157:H7 RepID=B3A9A3_ECO57 Length = 412 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/403 (31%), Positives = 200/403 (49%), Gaps = 38/403 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LTV +++ KP+EK Y + DG GL L V +G KVW+ RY I K + T+G++P + Sbjct: 6 LTVTEVKGMKPREKDYAVYDGFGLLLNVSKAGGKVWRFRYSHPITKKRQTYTIGRFPEFS 65 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKK-------Q 106 L EAR+ R+ I+ G+DPV KK + N +F A+ W+ KK Sbjct: 66 LAEAREVRDELRRMIARGVDPVTEKKNRKIEMSLKNLQTFEAVANAWFAFKKGSELRKPT 125 Query: 107 VWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGE 166 ++++ Y E+ K ++P G I+ I + + D+ A+++ K R E Sbjct: 126 LYNIEY--EVYKY----LVPFFGKYSIEKITAPVAINALDAVSDKNALQK--KLISRLNE 177 Query: 167 VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAF----NKALATFSGSIVSL 222 + YA+ G K NP + A G + K+ LP +++P F + T+ Sbjct: 178 IMNYAVNCGALKANPLLKIKTAFTGKKNKSLAALPVERLPEFLSWWDSVPHTYQ------ 231 Query: 223 IATKVLRY---TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 IA L + T +R E W +DF++ + I A MK + HVVP+S Q + +L Sbjct: 232 IAHNALLFQILTMVRPGEAIKAEWSEIDFDSGLWIIPAHKMKCHREHVVPLSSQAISILR 291 Query: 280 TLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEW 339 T+ I + +VF K P+ N + I ++G+ + HGFR +ST++NE + Sbjct: 292 TMQEIKR--GRYVFFSSRTKDAPMGRNTIKTPIAASKFKGIVTLHGFRSMWSTLLNEEGF 349 Query: 340 PADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 D IE LAH +G +R IYN YL++R+ MMQW D+ D+ Sbjct: 350 NPDVIEAALAHKSGDKIRDIYNRTIYLEQRKIMMQWVGDFFDD 392 >UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepID=Q1Q875_PSYCK Length = 452 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/399 (32%), Positives = 205/399 (51%), Gaps = 23/399 (5%) Query: 1 MLTVKQIEAAKPKEK-----PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKY 55 ML+ +I KP +K P + D GL L V SG + W Y+ DGK++ T+G Y Sbjct: 1 MLSDAKIRKLKPTDKCTPSRPDKYSDQQGLQLLVRSSGTRTWVSAYRFDGKQQKTTLGTY 60 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKK----ASSNNNSFSAIYKEWYEHK-KQVWSV 110 P M L EAR + ++ GI+P K+ A+ +F+ EW E + + V Sbjct: 61 PQMGLAEARVANADIKALVANGINPKNKKRQDKLANEQAKTFNDYAVEWLEERERNVKPR 120 Query: 111 GYATELAKMFDDDILPIIGGLEIQDI--EPMQLL--EVIRRFEDRGAMERANKARRRC-- 164 Y + +M D ++P G+ ++D+ E +L+ + R + GA R + RR Sbjct: 121 TYQQDYNRMHKD-VIPSFEGIALKDVTFEDCKLMADNIESRTNNEGASPR--EVTRRTID 177 Query: 165 --GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSL 222 G + R A+ + N L + + K+ + ++P + + + G + Sbjct: 178 LVGNILRRAMRERLIEVNHTDGLKELYPKAKTKHMKHVELSELPKLLQDIEGYHGHDQTR 237 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 + K L Y+ RT ELR M W+++DF NR+ +D +K + HVVP+SDQ++ +L + Sbjct: 238 LGMKFLAYSFCRTIELRMMKWEHIDFPNRLWRVDIDNLKIARKHVVPLSDQMLAVLEEMK 297 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD 342 IT E+VF +P E + + +GY G ++GHGFRH ST +NE + D Sbjct: 298 HITGQY-EYVFY-HTGMHQPYSEEFINNALDILGYGGKQTGHGFRHIASTNLNELGYMGD 355 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AIE Q+AH S+R +YNHAQ+L++RR++MQ WAD+LD Sbjct: 356 AIEKQMAHDKKSSIRAVYNHAQHLEERRKIMQVWADFLD 394 >UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WP11_VEREI Length = 387 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 194/382 (50%), Gaps = 14/382 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LTV+ +EAAKP+ K Y+L D GLYL+V +G K W+ Y +GK+ T G++P ++L Sbjct: 3 LTVRAVEAAKPRHKGYKLADSVGLYLFVTPAGGKSWRANYLREGKQATRTYGRWPDVSLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVG-YATELAKMF 120 EAR AR G+ P A+ SF I + W + K S G + +++A Sbjct: 63 EARKAHAAARD----GVVP-----ATVAVPSFETIARAWLKLKLPTLSNGKHQSQVANTL 113 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + + P IG I I +L++V++ + G +E A++ R VF YA G + + Sbjct: 114 ERFVFPKIGKRPIDTIHRPELVDVVQAVQLDGRVETAHRVAGRIAAVFDYAQDAGLIESH 173 Query: 181 PAPDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 PA L + + KK + + A +A+ + + L ++L +T +R ELR Sbjct: 174 PASHLVRVLHSRKVKKPMASIAPAEAGALMRAITDYDEPVTGL-GLQLLAHTFVRVGELR 232 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 +M W + + I A MK R HVVP+S Q ++ L + EFV Sbjct: 233 AMRWSEFKEDGAVWVIPAERMKLRLPHVVPLSLQAQAIVGQLRLLNAE-REFVMDSPLRP 291 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRG 358 P+ EN L + ++GY G + HGFR ST++NE + D IE QLAH +VR Sbjct: 292 GHPLSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHKETDAVRA 351 Query: 359 IYNHAQYLDKRREMMQWWADWL 380 YN AQYL +RRE+MQWWA WL Sbjct: 352 AYNRAQYLPQRRELMQWWAQWL 373 >UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW0_9NEIS Length = 394 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 201/390 (51%), Gaps = 12/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLL-DGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT Q + P +K + L DG GLYL + G++ W+++Y + K+ +G YP M L Sbjct: 3 LTDNQCKHTPPPDKGVKQLSDGGGLYLQIDAKGRRYWRIKYTYNQKQHTQHLGIYPAMPL 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHK--KQVWSVGY 112 + AR + + +S GI+P ++ N+F + ++W+ K K W + Sbjct: 63 KAARMERDKIKLLLSQGINPKTHQEQQQRAEQKRITNTFEHVARKWHTTKAEKGDWKPAH 122 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 AT + + + ++P +G L I DIEP+ +L I+ E G + ANK +F +A Sbjct: 123 ATRVLRQIELYLIPPLGSLSIADIEPLDILHAIQNVEHTGKIATANKVYDIAHAIFSFAA 182 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYT 231 YN A +L ++ + + + ++ A +A+ ++GS + ++ Sbjct: 183 RMKLCPYNAAAELKPELQQAKATPYRHVTDTGELTALLQAIDGYTGSPQVKVLLQLAPLV 242 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 R ELR + W ++DF+ A MK H+VP+S Q + LL++L +T E+ Sbjct: 243 FARPSELRLLKWADIDFQAACYHKAAHEMKNGIAHIVPLSRQALALLSSLKPVTGHY-EY 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF + KP+ E A + +IG+ + HGFRH ST+++E ++ +D IE QLAH Sbjct: 302 VFHNKA-AGKPLSEAAARKALSRIGWLDKVTLHGFRHTASTLLHEQQYSSDWIERQLAHK 360 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + + R YN A++L++RR+MMQ WAD+LD Sbjct: 361 DPNTTRASYNFAKHLEQRRQMMQEWADFLD 390 >UniRef50_B9NUX0 Site-specific recombinase, phage integrase family n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NUX0_9RHOB Length = 404 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/400 (32%), Positives = 200/400 (50%), Gaps = 32/400 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ +P + Y+ D +GLY+ V +G K W L Y+ GK+K+++ G YPL++L+ Sbjct: 3 LTDIALKNMQPSGRAYKRSDAHGLYILVKPNGSKHWHLHYRFLGKQKVMSYGPYPLISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEH-----------K 104 EAR+K RK + GIDP+ KK + F + E E K Sbjct: 63 EAREKRDRDRKFLIEGIDPMVVKKERKLASERAQRGRFDILAAELLEKNRVEGRAEQTLK 122 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 K+ W L +M + D + L + +I P +L V+++ E G +E A++ R Sbjct: 123 KKAW-------LVEMANKD----LAKLAVMEITPSDVLAVLKKQEKAGNLETASRLRTTI 171 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLI 223 GEVFRYAI G + +P L A+ R ++ + +++ ++ +SG V + Sbjct: 172 GEVFRYAIACGLTENDPTIPLKGALVQKRPRSRSAITNPERLGELLCSIENYSGYRVVAL 231 Query: 224 ATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSS 283 ++L +R ELR W+ D E TI A MK R+ HV P+ Q +++L L Sbjct: 232 GLRLLALLHVRPGELRFAKWEEFDLEAGKWTIPAERMKMRQPHVAPLPTQAIDILRELQR 291 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEH-EWPA 341 I+ P V + + P+ EN ++ +GY E + HGFR FST+ NE EW Sbjct: 292 ISHP-DGMVLPSQRRRIDPLSENTFNKALRMMGYSKEEMTAHGFRATFSTLANESGEWNP 350 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 DAIE LAH + VR YN A + ++R EM QWWAD L+ Sbjct: 351 DAIERALAHVDSNEVRRAYNRAAFWEERVEMAQWWADGLE 390 >UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y106_LEPCP Length = 429 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/394 (30%), Positives = 186/394 (47%), Gaps = 26/394 (6%) Query: 13 KEKPYRLLDGNGLYLYVPV-SGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTAR 71 K+ R+ DG GLYL V G W+L Y +GK K L++G YP L AR KA AR Sbjct: 23 KKPARRIGDGGGLYLLPLVKGGAHGWRLDYTFNGKRKTLSLGTYPDTGLSLARKKAAEAR 82 Query: 72 KDISVGIDPVKAKKA----------------------SSNNNSFSAIYKEWYEHKKQVWS 109 ++ G DP + +K + S A+ +W +H+ W+ Sbjct: 83 TLVAEGTDPSEHRKGVKEERERQHLAGQEAAQRAAAGLAEPGSLEAVAADWLQHRAGAWT 142 Query: 110 VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 G +A + P +G + +I P ++ ++R E GA E A + +R ++R Sbjct: 143 EGTRHNIAGSLKRYVFPTLGRRPVGEIAPGEIRTCVQRIEASGAAETAGRVFQRLRALYR 202 Query: 170 YAIVTGRAKYNPAPDL--ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 YA+ +P L ++ + K+ P + A + PAF + LA + G A + Sbjct: 203 YAVAHELVAADPTYPLKPSEIFRPRDTKHRPAMSAQEAPAFLRKLADYGGDPTVRNALLL 262 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 L TA+R ELR+ W +D + I A+ MK + H+VP+S Q + +L + ++T Sbjct: 263 LVLTAVRPGELRAAEWTEIDEAAALWRIPAAHMKMKAEHLVPLSVQALAVLEEMRALTG- 321 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 +F +P EN + + ++GY+G + HG R FST NE D IE Q Sbjct: 322 TQALIFPSPFYPGRPFSENTMNSALARMGYKGEATAHGMRTLFSTSANEAGHRGDVIERQ 381 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAH VRG YN A+Y+ +RR +M WW + +D Sbjct: 382 LAHEERDDVRGAYNRAEYMAERRRLMTWWGERVD 415 >UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B120_SULD5 Length = 419 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/408 (29%), Positives = 202/408 (49%), Gaps = 31/408 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 LT +++ +K +EK YRL DG GLYL V +G K W+L Y + +G +++G YP +TL Sbjct: 8 LTDTELKKSKIQEKTYRLTDGAGLYLLVEPNGSKGWRLDYTRPNGGRNTISLGTYPTITL 67 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA----------------SSNNNSFSAIYKEWYEHK 104 EAR+K +K I G+DP +K N+F + ++++E Sbjct: 68 CEAREKRDELKKQIKKGVDPSLERKGVKELQREEKEADHAEEERKQNTFEKVARDFFESI 127 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 Y + ++ I P +G + I + + ++E + R + +E A + Sbjct: 128 TIELVPKYHSSKLARLENHIFPYMGNIPIDQVSRLMIIEHLERLKAANKIETARRILNII 187 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGY-----RKKNFPFLPAD-QIPAFNKALATFSGS 218 +V+RYA+ A +N +AD K Y ++FP + +I + + + G Sbjct: 188 EQVYRYAVTHELAPHN---IIADIDKRYVIGKKEVRHFPTITDPVEIGKLVRMIDEYPGD 244 Query: 219 IVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELL 278 I + A K+ TA R +R W D E + I A MK ++ H++P+ Q+ +L Sbjct: 245 ISTKYALKLAILTAQRPYNIRFAEWNEFDLERDVWQISAEKMKMKRPHIIPIILQIKTIL 304 Query: 279 TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMN-- 335 L TK S+++F +PI EN + ++++GY E HGFR FSTI N Sbjct: 305 RELEPFTKNRSQYLFPALTSNVRPISENTMNQALRRLGYTKEEIVSHGFRAMFSTIANEH 364 Query: 336 --EHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 EH + +D IE LAH+ +G YN A+YL++RR +++WWA++LD Sbjct: 365 IPEHGFHSDIIERHLAHSEQNKTKGAYNRAEYLNERRGLIEWWANFLD 412 >UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UDD1_9RHOB Length = 406 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 127/390 (32%), Positives = 199/390 (51%), Gaps = 13/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I A KP + YR+ D NGL + V G + W+ RY+ +GK +++ +G+YP ++L+ Sbjct: 3 LTDAKIRALKPADTLYRVSDSNGLSIEVTPKGDRYWRFRYRFNGKAQMMGLGRYPSVSLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K R+ + G++P ++ A +SF +I E+ ++ + + Sbjct: 63 KARSKRDHYRELLDEGLNPSLERQTRQQELAQLEQSSFGSIATEFLRKRETEGAAPATLK 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +LP + L IQ+I QLL+V+R E RG A +AR G +FRYAI TG Sbjct: 123 KLRALLRLLLPDLAPLPIQEITAPQLLQVLRATESRGKHVVATEARALAGRIFRYAIATG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALA---TFSGSIVSLIATKVLRYTA 232 R + +P+ L +A+ R K + + + AF LA T+ G + +L +T Sbjct: 183 RCEQDPSYMLREALVTPRVKGYAAIREPE--AFGALLARIETYEGDTLIKNGLLLLAHTF 240 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R +LR W++ D E + A K + H+ P+S QVV L+ + K V Sbjct: 241 VRPGQLRLAQWEDFDLEAALWRAPADRTKMSRFHITPLSSQVVCLIKEMHR-NKADDTLV 299 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEG-LESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 R PI + ++ +G G + HGFR ST++NE E+ D IE QL H Sbjct: 300 MGSRVKPGHPISDMTFNKALRSLGVMGDVHVAHGFRKSASTMLNEQEYNYDWIERQLDHV 359 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + +RGIYN AQYL R MMQ W+D+LD Sbjct: 360 SQNRIRGIYNAAQYLQGRTRMMQEWSDYLD 389 >UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MWW9_VIBHB Length = 410 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/390 (28%), Positives = 201/390 (51%), Gaps = 15/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 L+ Q++ K + K + + DG+GL L + +G K W Y K K + +GKYP ++ Sbjct: 8 LSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGLGKYPDVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSA------IYKEWYEHKKQVWSVGYA 113 L AR++ T R+ ++ GIDP + +A + KEW+E K+ S YA Sbjct: 68 LATAREQRQTMRELVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQHSVSSDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + I P +G L +++I ++ +R E +G++E + +R EV YA+ Sbjct: 128 DDIWRSLELHIFPNLGQLPLREILAPTVIAQLRPLEAKGSLETVKRVCQRLNEVMTYAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G+ + NP ++ K + K+ + + ++++ + +V+ A + +T Sbjct: 188 CGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFEFQLHTLT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS---E 290 R E W +DF ++ TI MK ++ H +P+SD V++LL + KP+S + Sbjct: 248 RPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFM----KPISFEHK 303 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 +VF + +V IK+ G+ G HG R ST +NE + DAIE+ LAH Sbjct: 304 YVFPSDAKAGSHMNSQSVNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELCLAH 363 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 + ++R IYN+A+YL++RR +MQWW++++ Sbjct: 364 VDKNTIRDIYNNAEYLEERRNVMQWWSEYI 393 >UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root RepID=A5EUW8_DICNV Length = 399 Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/390 (30%), Positives = 194/390 (49%), Gaps = 12/390 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ ++ KP EK Y++ D +GL+ V +G +W++RY + GK + L +GKYP ++L Sbjct: 1 MLSDAKLRKLKPTEKKYKIADSHGLFAVVMPNGSILWRMRYVLAGKRRELALGKYPAVSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYE----HKKQVWSVGYATEL 116 EAR R+ I G+DP A+ + E E K + S Y Sbjct: 61 SEARQIVLLYREQIERGVDP-HAQHVERHKKQDGVTVAEAVELLLSEKAKYCSASYLESC 119 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA-IVTG 175 + +L G + ++ + +I ++ G A + + GE+++ + TG Sbjct: 120 RSRLSNHVLSRFGARALAEVSEDEWRALINWLDNGGKNYTAIRVQDLAGELYKTVRLKTG 179 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 NP ++ +K +N+P + PA + A+ F+G +A K L Sbjct: 180 LKIANPILEIRGTVKKKPAQNYPRITNPA-RFGELLHAIDYFNGRWQVYLALKFLPLVFC 238 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R ELR M+W+ VDFE + I A +K R+ H+VP+S Q + +L + S+ VF Sbjct: 239 RQIELRRMVWQEVDFERALWCIPAEKIKMRRAHLVPLSTQAIAILRQAEQLR--CSDLVF 296 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLES-GHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 G + ++PI N + ++ +G+ E GHGFR +T++NE W + ++ QLAH Sbjct: 297 CGVRNPRQPISVNTIGSALRTLGFGHDEMVGHGFRGTAATLLNELGWDSHIVDFQLAHWQ 356 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 SV YNHA+YL +RREMMQ WAD+ DE Sbjct: 357 RSSVSSAYNHAEYLTQRREMMQAWADYCDE 386 >UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A1WW57_HALHL Length = 412 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 201/395 (50%), Gaps = 19/395 (4%) Query: 2 LTVKQIEAAKPKE--KPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLM 58 LT +Q AKP E + +L DG GL L V +G K WQ RY+ G+E + +G YP + Sbjct: 8 LTDRQCRTAKPPEGKQQLKLTDGGGLVLLVKSNGGKQWQFRYRRPSGREATMGLGVYPDV 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYE--HKKQVWSV 110 L +AR++ AR ++ GIDP+ +KA S++ +SF A+ +EW++ H+ +V Sbjct: 68 PLSKARERRDEARALLADGIDPIDQRKAQRSAAASADTHSFEAVAREWWDAVHRHKV-VA 126 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 +A + + P +G + IEP +LE +RR E +E A++ + G+V RY Sbjct: 127 SHANRNLRRLEQYAFPKLGRRPVSAIEPPDVLEALRRIEALEHVETAHRVKTLIGQVCRY 186 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATKVL 228 AI TGR +P DL ++ + ++ P + PA+ P +A+ + G + A ++ Sbjct: 187 AIATGRGSRDPTADLRGMLRSPKTRHLPAITEPAELGPLL-RAIDGYRGQPTTRAALQLA 245 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 R ELR+ W+ D + T D K V P+ Q + +L L I++ Sbjct: 246 PIVFCRPGELRAAEWQAFDLSS--GTWDYQPSKDGDPLVTPLPRQAISILRELEPISR-S 302 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQ 347 S ++F +PI +N + +K++ Y G HGFR TI+ E W + +E+Q Sbjct: 303 SRYLFPSGRTPDRPISDNTLTAALKRLDYGGRMVAHGFRAAARTILVERLGWGIEIVEMQ 362 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 L H + YN Q++++R M+Q WAD+LDE Sbjct: 363 LGHRVRDAHGRAYNRTQWIEQRGVMLQQWADYLDE 397 >UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K287_PSEFS Length = 401 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 123/388 (31%), Positives = 195/388 (50%), Gaps = 17/388 (4%) Query: 10 AKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWT 69 AKP++KPYRL D GLYL V +G + W+L+Y+ GKEK L +G YP + LQEAR K Sbjct: 11 AKPQDKPYRLYDEQGLYLEVQPNGGRYWRLKYRFLGKEKRLALGVYPEVGLQEARRKRDD 70 Query: 70 ARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDD 123 AR ++ G DP ++ + + ++F ++ +W ++ W Y + + + + Sbjct: 71 ARVQLASGQDPSLQRRMAKVVSQLDHQHTFESVATQWLNIRESSWDPEYTRTVRQRLELN 130 Query: 124 ILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAP 183 P +G L I I L+E ++R RGA E A + + ++F +A G N Sbjct: 131 AFPWLGKLPISSISTPMLVENLQRIIKRGARETARRVAQIYKQIFEFAEAAGITPPNQIG 190 Query: 184 DLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSML 242 +L+ + R K+F + +++ A KAL +++G++ A K+ R +LR M Sbjct: 191 NLSRTLPAKRVKHFAAVTDPEKLGALLKALDSYAGTMPVCCALKLAPLLFCRPGDLRHME 250 Query: 243 WKNVDFENRIITIDASVMKG-------RKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 W V+ + I MKG R H+VP+S Q + +L L +T + F Sbjct: 251 WSEVNLDAGEWLIPGHKMKGLTATKQDRPDHLVPLSQQAIAVLHELKPLTG-RHRYAFPS 309 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNE-HEWPADAIEVQLAHANG 353 +P+ NAVL ++++ G E +GHGFR TI E + D +E QLAH Sbjct: 310 ARGGDRPMSNNAVLSALRRMDISGDEMTGHGFRATARTIGAEVLGFRPDLLEHQLAHTVK 369 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 + Y+ +L +RREMMQ WAD+LD Sbjct: 370 NPLGRAYDRTSFLPERREMMQIWADFLD 397 >UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacteria RepID=B1Y4T5_LEPCP Length = 427 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 120/389 (30%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 1 MLTVKQIEAAK-PKEKPY-RLLDGNGLYLYV------PVSGKKVWQLRYKIDGKEKILTV 52 MLT + AK P+ + + RL D GLYL V SG K+W+ +Y+ GKEK+L + Sbjct: 1 MLTDTECRNAKCPEGRAFVRLADAGGLYLEVKPPGAKTPSGSKLWRWKYRHGGKEKLLAI 60 Query: 53 GKYPLMTLQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQ 106 G YP +++ AR + AR + G DP +A+K + + SF A+ ++W+ K Sbjct: 61 GAYPAVSVAGARREQAKARALLDAGTDPGEARKEAKYAKLNEHETSFEAVARQWWAGWKA 120 Query: 107 VWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGE 166 + YA + + + D P+IG + + + + ++ E RG E A + G+ Sbjct: 121 NKTERYAEYVLRRLELDAFPVIGAKPVAGLTAPDFVRMAKKIEARGVGELARRIMETSGQ 180 Query: 167 VFRYAIVTGRAKYNPAPDL--ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 V R+A+ G + NP D+ D +K +NF + A ++P + + + GS+ + +A Sbjct: 181 VMRWAVAHGLTERNPTADVKPGDILKPRTVENFARVGAAELPDLMRHINAYDGSVFTRLA 240 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITI--DASVMKGR----KIHVVPMSDQVVELL 278 +++ T +RT EL W+ D + TI D KGR + H+VP++ Q + +L Sbjct: 241 LQLMALTFVRTSELIGAQWQEFDLDAAEWTIPPDRIGRKGRQGERRAHLVPLAPQALAVL 300 Query: 279 TTLSSITKP----VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM 334 L S +F G D ++P+ N +L ++++GY+G +GHGFR ST + Sbjct: 301 RLLQSARGADRCRGPALLFPGERDHERPMSNNTMLKALERMGYKGKMTGHGFRGIASTAL 360 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHA 363 NE + D IE QL+H G VR YNHA Sbjct: 361 NEMGFRFDVIEAQLSHIEGNRVRAAYNHA 389 >UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0FEDC Length = 418 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 125/406 (30%), Positives = 202/406 (49%), Gaps = 36/406 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+ AKPK K Y++ D GL+L + SG K W+ ++I+ T+GKYP ++L+ Sbjct: 3 LTDTAIKNAKPKTKAYKMSDSGGLFLLIKPSGYKSWKYDFRINSTRGSYTIGKYPDISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNS-----FSAIYKEWYEHKKQVWSVGYATEL 116 +AR + AR+ ++ GI+P + K N+ FS +W KQV + +L Sbjct: 63 QARQEHLQARELVAQGINPKQIKTQRKVNDELQTKRFSYYMNQWLN--KQVLAESTFKDL 120 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D +++P + I + LL+++ DRGA E A + VF ++ G Sbjct: 121 KQRIDKNLIPFLDKKNINEYTTADLLKIMLSISDRGAKETAIRLANVARRVFNEVLILGI 180 Query: 177 AKYNPAPDLADAMKGYRKK---NFPFLPA--------DQI--PAFNKALATFSGSIVSLI 223 + NPA LA+ + K+ NF + + +QI P+ + A Sbjct: 181 IETNPAQGLAELLPKPDKRIDNNFGHITSTEELKILLNQIDAPSARQDFAVTQ------- 233 Query: 224 ATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSS 283 A K++ LR +R + W+ ++F+ II + A+ +K K VP++ Q V +L + Sbjct: 234 ALKLMPLVFLRPYNIRFLKWEYINFDENIIKLPATELKNNKPLDVPLATQAVTILKQMQQ 293 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--------EGLESGHGFRHEFSTIMN 335 +T + +VF K P+ EN +K+I G + HGFRH ST++N Sbjct: 294 VTGHKT-YVFVTAQGKDTPLSENTTTNALKRIINPTTNKPYGTGYMTSHGFRHTASTMLN 352 Query: 336 EHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 E + AD IE+QLAH N +R YN A++++KR MMQ WAD+LD Sbjct: 353 ELGYEADIIELQLAHTNKDRIRATYNKAKWMNKRIAMMQDWADYLD 398 >UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J426_COMTE Length = 416 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 132/402 (32%), Positives = 200/402 (49%), Gaps = 25/402 (6%) Query: 1 MLTVKQIEAA--KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT Q A P K R D GLYL V +G + W +Y+ DGKE L +G+YP + Sbjct: 1 MLTDAQCRNAVCSPGAKRERFSDAGGLYLEVSPAGSRRWFWKYRKDGKEGRLALGRYPEV 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGY 112 +L AR AR S GIDP KA+K + ++F A+ EWYE + WS G+ Sbjct: 61 SLTAARKARDAARLQKSEGIDPAKARKLEKLVNPTGVADTFKAVALEWYEKQVPRWSPGH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + + D+ P IG E+ I+PM+LL V+++ E RGA+E A++A +V+RY + Sbjct: 121 AERMHRQLERDLFPWIGEREMAQIQPMELLAVLQKVEARGAVETADRALMLARQVWRYWL 180 Query: 173 VTGRAKYNPAPDLADAMKG----YRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKV 227 T N D+ + +K YR NFP + Q +A+ + G A + Sbjct: 181 PTAS---NTQRDITEGLKARLTPYRGTNFPAIVEPQRFGELLRAMYAYKGGPFVRTALLL 237 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQVVELLTT 280 R LR M W +D + + I ++ MK + HVVP+ Q V +L Sbjct: 238 APLLYQRPGNLRMMEWAELDLDAALWKIPSAKMKRSVQEKENGEPHVVPLPKQAVAMLRE 297 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM-NEHEW 339 L ++ +VF G+ D +P+ +N+V + +G +S HGFR T++ ++ + Sbjct: 298 LLPLSG-RGRYVFPGQRDHDRPMSDNSVRTALYSLGVGEEQSWHGFRASARTMLVDQLDL 356 Query: 340 PADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AIE LAHA + YN +YL KR + +Q WAD+LD Sbjct: 357 DPLAIEANLAHAVKDANGRSYNRTKYLAKRFDQVQQWADYLD 398 >UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4F8_HAES1 Length = 413 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 113/392 (28%), Positives = 198/392 (50%), Gaps = 15/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 LT +I AKPK+K Y L DG GLYL V +G K+W+ Y + K K++++G YP +L Sbjct: 8 LTNTKILNAKPKDKDYTLSDGQGLYLLVKSNGSKLWRFNYYDLLKKRKLISLGSYPETSL 67 Query: 61 QEARDKAWTARKDISVGIDP----VKAKKASSNN--NSFSAIYKEWYEHKKQVWSVGYAT 114 +AR K R ++ I+P K K+ + N N+ + K+W E K Sbjct: 68 LDARTKRDEYRALLAKDIEPQDYIFKQKEQAIFNQCNTLIGVAKDWREMKSSKVEADTMK 127 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + ++ + + P +G + I DI +++ D E K R E+ R+A+ Sbjct: 128 DQWRLLELHLFPHLGNMPISDITAPFTRMKLQKLADDKKFEMLKKVIRGLNEIMRFAVNA 187 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY---T 231 G ++NP +L + ++ P + D++P F L + + + + L +L + T Sbjct: 188 GLIQFNPTANLQELFPSGEVQHRPSIHPDKLPKF---LESVNKANIQLQTRCLLEWQLLT 244 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRK-IHVVPMSDQVVELLTTLSSITKPVSE 290 +R E +W+ +DFEN+ I MKG+K H+VP+S Q + +L + IT + Sbjct: 245 MVRPSEAAGTMWREIDFENKTWLIPKDRMKGKKRSHLVPLSQQAINILNIMRPITGNC-D 303 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 FVF D + + ++++GY+G+ HGFR ST +NE+E+ + IE L+H Sbjct: 304 FVFPKNGDLTTNMSSETINKALRKMGYQGILCAHGFRSIASTALNENEFNVEIIEALLSH 363 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 G VR Y+ + Y ++R+ ++WW +++++ Sbjct: 364 VKGDKVRTAYDRSTYEKQKRQYIEWWGNFVEK 395 >UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammaproteobacteria RepID=A0KW55_SHESA Length = 411 Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 114/389 (29%), Positives = 192/389 (49%), Gaps = 18/389 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT K + AK + KPYRL DG LYLYV +GK W+ RY K +G YP ++ Sbjct: 8 LTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAGK-TWEFRYIRPSTSKPTYFGLGSYPDVS 66 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L EARDKA ARK+++ GIDP K K A+ N + I + W + K+ Sbjct: 67 LAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQGSIKPKTI 126 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P +G + I + + ++ E +G +E + + E+ +++ Sbjct: 127 EGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNEIMNFSVN 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL----R 229 +G NP L+ + +RK L A + + L T + + + L+ T+ L Sbjct: 187 SGYIHANP---LSGIREVFRKSKVEHLKALKPAELAELLQTIANANL-LLTTRCLIEWQL 242 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 +T R E W+ +DF+ ++ TI S MK + H++P+++ + +L T+ I++ S Sbjct: 243 HTMTRPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISEQ-S 301 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 +FVF D +K + + ++G +G +GHG R ST +NE + D IE LA Sbjct: 302 QFVFPSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAALA 361 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWAD 378 H + +R YN YL++R ++M+WW++ Sbjct: 362 HVDKNQIRSAYNRTTYLERRTKLMEWWSN 390 >UniRef50_A7H0X5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0X5_CAMC5 Length = 396 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 118/391 (30%), Positives = 205/391 (52%), Gaps = 15/391 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKK--VWQLRYKIDGKEKILTVGKYPLM 58 +L +I+A KPKEK Y++ DG+ LY+ V SG K +++ + + G+ K +++G+YP + Sbjct: 3 ILNDSKIKALKPKEKRYKISDGDNLYIQVMPSGTKTFIYEFKSRSSGRYKRISLGQYPAI 62 Query: 59 TLQEARDKAWTARKDISVGIDPV-KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 +L AR+K +K ++ G +P+ +AK+A + SF A++ EW++ K++ S A Sbjct: 63 SLLMAREKRLEFQKALANGDEPMSEAKQAMT---SFEAVFDEWFKFKQKEVSTKQAFTHK 119 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + ++ LP G +I+ I Q+LE + E ++A ++FR+A++ Sbjct: 120 RYYERFFLPKFGKDDIKTITKRQILEAVESLNKEAKFETLDRALSSISQLFRWAVMNEYL 179 Query: 178 KYNPAPDL-ADAMKGYRKKNF--PFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 +++P + +A+ K N D I + + G I + A +A R Sbjct: 180 EHSPTYGIDKNALFKMPKVNHYAAIFDDDGIRKLVNNIKNYDGDIRVITAALFGLLSAQR 239 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 +RS W ++FE +I I MK ++ H+VP+ Q ++LL++ + SEF+F Sbjct: 240 PFNVRSAKWSEINFEKKIWEIPKEKMKMKEAHIVPLCSQAIKLLSSFKKY-EFRSEFLFP 298 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTI----MNEHEWPADAIEVQLA 349 K PI +N+V +++ +GY + HGFR FSTI + EH IE+ L Sbjct: 299 SVKSTKIPISDNSVRSMLRNLGYTNDDIVPHGFRAMFSTICHEHIKEHGLEERIIELCLD 358 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 HA V+ YNHA+ L +R ++MQWW D+L Sbjct: 359 HAERNKVKAAYNHAKNLKERAQLMQWWGDYL 389 >UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales RepID=A9I0E1_BORPD Length = 536 Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 120/410 (29%), Positives = 208/410 (50%), Gaps = 32/410 (7%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +L+ QI+AAKP +K Y L DG+ LYL V ++GK W RY D K L +G YP +TL Sbjct: 102 LLSETQIKAAKPGQKEYMLNDGDNLYLRVRITGK-AWIYRYMKDSKPIKLGMGPYPEVTL 160 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQ--VWSVGY 112 +AR KA+ A + G+DP + ++ + ++F + + W+ K+ WS GY Sbjct: 161 AQARTKAYEANSQRANGLDPKEVREQLAEQTRIARLHTFELLARAWHASAKKDREWSEGY 220 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A ++ + + I P +G I+ I P +++ + R +DRG +E A + R V++YA+ Sbjct: 221 AQKVIRHLEIHIFPWVGHKPIEMILPTEIVRCLHRPKDRGNLETAQRVREAVQHVYQYAV 280 Query: 173 VTGRAKYNPAPDLADAMKG----YRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATK 226 G P+ + + G R ++F + PA Q+ + + ++ G ++ A + Sbjct: 281 DVG--ALEPSKNFVNKNTGGLPPPRSRHFAAITEPA-QLGQLLRDIRSYHGQFITRCALR 337 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK---------IHVVPMSDQVVEL 277 + R ++R W+++ E + MK R+ H+VP+ Q +E+ Sbjct: 338 LAPMMFQRPGQIRLADWEDISLEVELWRCPPEKMKMREWQKRDSRTPAHIVPLPRQALEI 397 Query: 278 LTTLSSITKPVSEFV--FAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTI 333 L L +T P + R++K + I +N + ++ +GY+ E +GHGFR T+ Sbjct: 398 LRELHPLTGPTGPVFRSMSRRSEKSRYISDNTINAALRTMGYDTKEEITGHGFRATARTM 457 Query: 334 MNEH-EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + EH W D IE LAH + + Y+ A ++ +R+ M+Q WAD+LDE Sbjct: 458 IREHLGWEPDVIERHLAHTSDEELGSSYDRAAFIAQRKAMVQQWADFLDE 507 >UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcus RepID=A3ZAX6_9SYNE Length = 426 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 128/408 (31%), Positives = 205/408 (50%), Gaps = 35/408 (8%) Query: 1 MLTVKQIEAAKPK-EKP-YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 ML+ K I+A +P ++P + D +GLYL+V SG K W+ Y+ G + T+G YP + Sbjct: 1 MLSDKAIQALRPDPDRPGTKHHDRDGLYLWVARSGSKTWRKDYRWQGARRTFTIGPYPAV 60 Query: 59 TLQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 L +AR +A I GIDP + +A S++ F I + W+EH WS Y Sbjct: 61 RLADARKQALELNTWIKAGIDPRTQVPTQQRNQAESSSRPFVQIAQAWFEHHSASWSPRY 120 Query: 113 ATELAKMFDDDILPIIGGLEIQ-----DIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 ++ + + ++P +G L+I+ DIE L ++ RGA E+A RRC +V Sbjct: 121 CRDMREKLNHFVIPALGQLDIEAISRSDIETQLLAPIL----ARGANEQA----RRCNDV 172 Query: 168 FR----YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV--- 220 R +A+ + NPA + R ++ + ++P + + F + Sbjct: 173 TRRVIEHAVDLELRQDNPAVKARKVIAATRVTHYHRISWVELPELLEVIDRFERQRLAER 232 Query: 221 -SLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 SLIA +++ T +R ELR W VD E R I A MK R H+VP+S Q L Sbjct: 233 SSLIALRLMMLTLVRPSELREARWSEVDTEGRQWIIPAERMKTRVRHIVPLSSQARHLFD 292 Query: 280 TLSSITKPVSEFVFAGRNDKKKP---ICENAVL-LVIKQIGYEGLESGHGFRHEFST-IM 334 IT ++ VF N + + N L ++++++G++G ++ HGFR T + Sbjct: 293 MQRPITGH-TDLVFHTPNHRGSGELRVMSNGCLSMLLRRMGFQGRQTPHGFRGFGQTNCI 351 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + + P E QLAHA+G SV Y+ A+YL++R +M+Q WAD LD+ Sbjct: 352 EQLKIPRVVTEKQLAHADGNSVSRAYDWAEYLEERSDMLQRWADLLDQ 399 >UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9F3_9SPHN Length = 443 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 137/417 (32%), Positives = 209/417 (50%), Gaps = 41/417 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT+ +I+ AKP+ YRL D GL+L+V +G K W+ RY+I KEK LT+G+YP M L Sbjct: 3 LTIVEIKNAKPQASDYRLADSQGLFLHVTSAGGKFWRYRYRIGPKEKTLTLGRYPEMGLV 62 Query: 62 EARDKAWTARKDISVGIDPV----KAKKA--SSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR+ ARK +S G DP KAK A + +F + +EW ++ +WSV A Sbjct: 63 AAREAHHEARKLVSEGKDPALEKQKAKIARIEAAKITFRKLAEEWLADQEPIWSVSNAKR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + F+ D+ P+ G L I IE +L +R+ E RG++E A + R VFR A G Sbjct: 123 VRHRFERDLYPLFGNLPICQIESAPILRALRKIEARGSIETAKRVRGYIKSVFRRAKGEG 182 Query: 176 RAKYN---PAPDLADAMKGYRK--KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 + ++ DA+K R+ K + F KA+ + S+ +A+++L Sbjct: 183 LVDHAILLEIDEIKDALKPARRGSKQPALTEVPETLEFQKAVDRSTSSLTVKLASRLLAL 242 Query: 231 TALRTKELRSMLW---KNVDFEN-------RIITIDASVM------KGRKI--HVVPMSD 272 T +R LR+ LW + +D++N I I AS M KG H VP+ Sbjct: 243 TLVRVGVLRTALWSEFEGIDWDNPDAIPNAPIWRIPASRMKLDVEDKGNPAFGHDVPLPH 302 Query: 273 QVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIG---YEGLESGHGFRHE 329 Q VE+L L +T + +F ++P+ + A+ + K++G Y+ + HG+R Sbjct: 303 QAVEVLRALRPLTGGFA-LLFPNSKSWREPMSDAALSTMYKRMGGGRYKNVMVPHGWRSS 361 Query: 330 FSTIMNEH--EWPADA----IEVQLAHANGG--SVRGIYNHAQYLDKRREMMQWWAD 378 FSTIMNE E D I++ LAH G + YN ++Y R ++Q WAD Sbjct: 362 FSTIMNERAAELERDGDRMVIDLVLAHVPPGVSASEWSYNRSRYRKPRGTLIQIWAD 418 >UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TYD6_MARAV Length = 412 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 123/377 (32%), Positives = 198/377 (52%), Gaps = 15/377 (3%) Query: 15 KPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 K +L DG GLYL + +G+ W+L+Y+ GKEK+L +G YP ++L+EAR K A++ + Sbjct: 23 KRTKLADGAGLYLDIQKAGR-YWRLKYRYGGKEKLLALGVYPDVSLKEARAKRDEAKRLL 81 Query: 75 SVGIDPV------KAKKASSNNNSFSAIYKEWYEH--KKQVWSVGYATELAKMFDDDILP 126 + IDPV KA++ + +F I EW EH KK V + Y + + P Sbjct: 82 ADNIDPVTHRQREKAERVEATATTFKGIALEWLEHVHKKNVGATTYPKN-KRRLEMYAYP 140 Query: 127 IIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLA 186 +G + +IEP +L ++R E +G ++ A++ + G+VFRYA+ TGRA + DL Sbjct: 141 KLGRRPMAEIEPPDVLAILREIEGKGHVDNAHRLKTLIGQVFRYAVSTGRATRDVTADLR 200 Query: 187 DAMKGYRKKNFPFLPA-DQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKN 245 + K+ + D+I K + T+ GS +A K+ Y LR LR M W+ Sbjct: 201 GILPAPNVKHHAAVTTPDEIADMLKKIDTYWGSPTVCLALKLSPYLFLRPGNLRHMRWEE 260 Query: 246 VDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICE 305 +D++ T K + VVP++ Q ++LL L + E+VF K +P+ E Sbjct: 261 IDWDA--ATWTTDTTKNGEPLVVPLARQAIDLLKELQELNGN-REWVFPSGAGKGRPMSE 317 Query: 306 NAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNHAQ 364 NA+ + ++ +G+ S HGFR T++ E + + IE+Q+AH YN Sbjct: 318 NAITGALNRLELQGIMSAHGFRAMAKTVLTERLGFRTEIIEMQMAHRVRDVHGRAYNRTT 377 Query: 365 YLDKRREMMQWWADWLD 381 +L +R+ MMQ WAD+LD Sbjct: 378 WLPERQAMMQQWADYLD 394 >UniRef50_B7I6Z3 Site-specific recombinase, phage integrase family n=3 Tax=Moraxellaceae RepID=B7I6Z3_ACIB5 Length = 414 Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 124/400 (31%), Positives = 204/400 (51%), Gaps = 24/400 (6%) Query: 2 LTVKQIEAAKPKE-KPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLM 58 LT +I+ AK + K +L DG+GLYL + + K W+ Y K + G YP + Sbjct: 8 LTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIGFGSYPEV 67 Query: 59 TLQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVW--SV 110 +L +AR K AR ++ IDP V+ + +S N+F+A+ EW E K+ ++ Sbjct: 68 SLADARSKRDEARTLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEW-ESKQDFAESTI 126 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 L ++ + +I G I + P+++L + R +E +G +E A K + +CG++ RY Sbjct: 127 RGHKRLLQVINSNI----GKKPIDKVTPVEVLNICRIYEKQGKLETAKKVKVKCGQIMRY 182 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLR 229 + TGR + + DL A+K + K+ L +++ + + G+ ++ +A K+ Sbjct: 183 GVATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMALKIAP 242 Query: 230 YTALRTKELRSMLWKNVDFENRI--ITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT-- 285 Y +R ELR W ++D E + T + K H+VP+ QV LL + +T Sbjct: 243 YVFVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIKELTYD 302 Query: 286 -KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNE-HEWPAD 342 SE+VF K KP+ EN + ++++GY + GHGFR TI+ E +P + Sbjct: 303 PDGESEYVFPSMTSKLKPMSENTINQALRRLGYTSEQVCGHGFRASARTILEEVLNYPIE 362 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 IE QLAH YN ++L+KRREMMQ WAD+ D+ Sbjct: 363 IIEQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYCDQ 402 >UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZI9_ACILW Length = 401 Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 128/400 (32%), Positives = 200/400 (50%), Gaps = 26/400 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59 LT ++ AK KEK Y L D +GL L V +G+K W RY + G K + +G+YP+M+ Sbjct: 3 LTEIKVRQAKSKEKIYFLADDDGLSLKVEPNGRKSWSYRYSLAGTNKRPRMKLGEYPVMS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHK-KQVWS----VGYAT 114 L+EAR K + P+ K + F I +EW E K K + G Sbjct: 63 LKEARS-VRDEYKFNNYENKPLHKKYIKT----FQDICEEWLEFKIKNSFEDEPRCGVIQ 117 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 K D D+ P IG + +I+ L+++I++ E R E KA +++ YA+ Sbjct: 118 LAKKCLDQDVYPNIGLMPFIEIKRYDLVKIIKKIESRNVKEPVKKAYSYLNQIYDYAVAM 177 Query: 175 GRAKYNPAPDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G +YN A L + + KKN+P L +D++ F L + + A YT + Sbjct: 178 GYCEYNIAHGLHKILVNNKIKKNYPHLNSDELSNFLAKLNQINTDPIIKKALLFKLYTGV 237 Query: 234 RTKELRSMLWKNVDFENRIITIDA--------SVMKGRKI--HVVPMSDQVVELLTTLSS 283 R EL + D + +I I A V+ G I VP+SDQ +E++ + + Sbjct: 238 RGGELLLCEPHHFDLDKKIWKIPALHIKQYRRKVILGHDIPDFFVPLSDQALEVVKS-AL 296 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHE-WPA 341 + ++VF+ + KPI N + L+I+++GY E + HG R FSTI+NE + + Sbjct: 297 VWSHGEKYVFSSPRNNNKPIHFNTLNLIIRKMGYTKNELTSHGLRSTFSTILNESGLFQS 356 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + IE QL+H + R YNHA+Y ++R EMMQWW D++D Sbjct: 357 NWIEAQLSHTDKNKTRASYNHAEYFNQRMEMMQWWGDFID 396 >UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C3XC22_OXAFO Length = 427 Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 121/403 (30%), Positives = 204/403 (50%), Gaps = 26/403 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 L+ QI+ KPKEK Y+L DG GLYL V SG K+W+L++ K GKE L++G YP ++L Sbjct: 8 LSPIQIKNTKPKEKAYKLFDGGGLYLEVLPSGSKLWRLKFQKPSGKESRLSLGAYPDVSL 67 Query: 61 QEARDKAWTARKDISVGIDPVKAKK-------------ASSNNNSFSAIYKEWYEHKKQV 107 ++ R K AR+ ++ GIDP + +K A ++ F I Y KK Sbjct: 68 EQVRKKREEARRLLAQGIDPSEDRKEQKEAKQEQDVIRAFKDDRMFERIAMRLYASKKGR 127 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR---GAMERANKARRRC 164 + Y + + F+ + P IG I +IE +L + + ++ AR+ C Sbjct: 128 TTDDYRNTMLRQFELHLFPAIGKKNIAEIEGRELFTLFKAVSEKLNSKGKPMTYMARKLC 187 Query: 165 ---GEVFRYAIV--TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 EV+ A V + A NP + + ++ ++ + ++P F +AL + G I Sbjct: 188 QWAAEVYDLANVENSSFALNNPCRSVIKFLPKHQTEHMARIGFTELPQFIQALEAYGGHI 247 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 ++ A +L YT +R +R W + D N+ I + IH++P+ +Q + LL Sbjct: 248 LTKSAIWMLLYTGMRQTSIRRAQWSDFDL-NKGIWNRKPEKVDKNIHIIPLPEQAISLLK 306 Query: 280 TLSSITKPVSE-FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 + + SE VF + + E A+ I+++G++ +GHG R ST +NE Sbjct: 307 DIQLLATGNSENLVFPSVFAGQLKMSEAAIGQAIERMGFQ--MTGHGLRSVVSTGLNELG 364 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + +EVQL H G ++ YN+AQ+L++R++MMQ WA++L+ Sbjct: 365 FTPRLVEVQLGHKKGDAIEAAYNNAQHLEERKKMMQRWANYLN 407 >UniRef50_Q0BR52 DNA integration/recombination/inversion protein n=6 Tax=Alphaproteobacteria RepID=Q0BR52_GRABC Length = 380 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/357 (30%), Positives = 187/357 (52%), Gaps = 15/357 (4%) Query: 39 LRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYK 98 ++Y+ GKEK+L+ G YP ++L EAR + A+ + G DP K + +F + Sbjct: 1 MKYRYGGKEKLLSFGAYPGVSLAEARLRRAKAKVVLGEGGDPGAGNKPRTQM-TFEEAAR 59 Query: 99 EWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERAN 158 +W+ H+ G+AT L + D P++G L + I P +L ++RR E RGA++ + Sbjct: 60 KWHGHRLDALDAGHATRLLTRLERDAFPVLGKLGLSVITPTDVLAMVRRVEARGALDVSR 119 Query: 159 KARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSG 217 + ++ +++R+AI G A+ +PA L +K R ++ P + ++PA +A+ + G Sbjct: 120 RLKQHVSQIYRFAIAHGWAERDPAEHLGQLLKPKPRTRHMPRIGRSELPALIRAIDGYDG 179 Query: 218 S------IVSLIATKVLRYTALRTKELRSMLW---KNVDFENRIITIDASVMKGRKIHVV 268 V+ A T +RT E R W +++D + + + A MK + HVV Sbjct: 180 EETPRRRAVTRAALLFTLLTWVRTNETRHARWEEFEDLDGASPVWRVPAERMKMVREHVV 239 Query: 269 PMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRH 328 P++ VV LL + + ++++VF G +PI +N ++ ++GY G ++ HGFR Sbjct: 240 PLAPAVVALLQEVRVYS--LADYVFVG-EKPDQPISQNTMIYACYRMGYRGRQTVHGFRG 296 Query: 329 EFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ST NE E + D IE+ LAH VRG YN A YL RR M++ WA ++ + Sbjct: 297 LASTWANEAECYQPDWIEMALAHVERDEVRGAYNAALYLSPRRRMLEDWAGFIQSHL 353 >UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacter baumannii SDF RepID=B0VTB2_ACIBS Length = 388 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 125/391 (31%), Positives = 200/391 (51%), Gaps = 29/391 (7%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ Q+++ KPKE Y + DG GL + V +GKK W L Y+ +GK+ +G+YP+M Sbjct: 1 MLSDAQVKSLKPKESRYSVADGEGLNISVFPNGKKKWVLSYRQNGKQNQKMLGEYPVMGC 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVG--YAT---E 115 +EAR +A + + + +N+ + +EW K W+ Y T Sbjct: 61 KEARLQARQLKLEYQGKV---------ANSPPVHKVIEEWLSIMKSQWTSKKYYDTVEYR 111 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 LA + +D L I ++E + + I+ +G +E A++A R +VF +AI + Sbjct: 112 LAYLTED-----FKNLPINEVERKHISKKIKEIVAKGTLETASRALRLGKQVFDFAIASD 166 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL-ATFSGSIVSLIATKVLRYTALR 234 NP + D + Y + P LPA ++P F + + A+ S SIV + A ++ YT R Sbjct: 167 YTDRNPCTLVEDVIPEYESDSHPCLPASEMPEFFRRMQASHSSSIVKM-AMLLVCYTGTR 225 Query: 235 TKELRSMLWKN--VDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 EL W + +DFEN++ I A MK RK +VP+ Q+ L L S+ K ++ Sbjct: 226 ITELLKARWDSGELDFENKVWIIPADRMKRRKELMVPLVPQIYALFKELESV-KIDDGYI 284 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHA 351 F R + + +VL +IK++GYE HGFR FST NE + + + I+ Q+AH Sbjct: 285 FKKRGKPYEYMTSESVLTMIKRMGYEDKMVTHGFRSLFSTHANESKLFRGEVIDYQIAHV 344 Query: 352 NGGS----VRGIYNHAQYLDKRREMMQWWAD 378 N + IYN A+Y D+R E+M W+A+ Sbjct: 345 NKSTKADKTSKIYNRAEYWDERVELMTWYAN 375 >UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VMY9_9GAMM Length = 429 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 123/393 (31%), Positives = 200/393 (50%), Gaps = 31/393 (7%) Query: 7 IEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMTLQEAR 64 + AK + P DG GLYL + + K W++ Y+ + K L +G YP ++L++AR Sbjct: 20 VSGAKKQRHP----DGGGLYLLIDETEAKYWRMDYRRPVTQKYNTLAIGTYPTISLEQAR 75 Query: 65 DKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 K +K ++ GIDP K ++ + N+FS EW + +K V + T + Sbjct: 76 SKRDEFKKMLANGIDPAEQRNNKKREQLQTLENTFSKFAAEWLDIRKHEGKVDHET--IR 133 Query: 119 MFDDDILPIIGGLEIQDIEPMQL-LEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + DILP IG L + ++ QL +V +RGA+E A + + V + + Sbjct: 134 KLNRDILPFIGKLPVAELTTEQLERDVTDALVERGALESARRIKSIINMVLKLPLKRRII 193 Query: 178 KYNPAPD--LADAMKGYR-----KKNFPFLPADQIPAFNKALATFSGS-IVSLIATKVLR 229 YNPAPD L KG +K AD + + F + I + +A K+ Sbjct: 194 TYNPAPDIILPQPTKGNHNAVTDEKEL----ADLLRKTWRLTKDFPRTRIRTELAIKLSA 249 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 Y R E+R++LW++VDFENR ++ AS K + H+VP+S Q ++L L + + S Sbjct: 250 YIYQRPGEVRTLLWESVDFENRCLSFAAS--KTNQDHIVPLSIQAYDILKELEEL-RTTS 306 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQL 348 ++VF + + + + V+K++G++G + HGFR T+++E E+ D +E QL Sbjct: 307 KYVFPSVKTSSECMSTDTLTQVLKRLGFKGKHTAHGFRATARTLLDEEIEYRTDIVEHQL 366 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AH YN ++L +RREMMQ WAD+LD Sbjct: 367 AHKVKDPNGTAYNRTKFLRRRREMMQLWADYLD 399 >UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRV8_BORPD Length = 402 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/391 (27%), Positives = 191/391 (48%), Gaps = 15/391 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + ++ A+PK+ PY+L DG GL+L V +G ++W+ ++++ GKE++ +G+YP + L Sbjct: 10 LSDRAVKNARPKDAPYKLADGGGLHLLVQPNGSRLWRYKFRLGGKEQVFAIGRYPDVGLA 69 Query: 62 EARDKAWTARKDISVGIDPVKAKK----------ASSNNNSFSAIYKEWYEHKKQVWSVG 111 EAR++ AR+ ++ G+ P ++ A + +F A+ W + + Sbjct: 70 EARERHLAARRLVADGVSPTAQRRDDRARMAEDAARAKAGTFKAVLDSWKATPARALAPA 129 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + + D + P +G + +I +L ++++ E A R +F +A Sbjct: 130 TIRQRDREIDRYLEPKLGARPVGEITRRELADLLKTVAT-DTPEVARNLRTHMNSIFEHA 188 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + G NP P A+ ++ + P + D++ A ++ + + A ++L T Sbjct: 189 VDVGLIAGNPTPG-PRALPARKQTSHPAVAMDELGALLASIDASACQPATKAAFRLLLLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 A R E+ S W +D + I A MK R H VP+S Q VELL + + + ++ Sbjct: 248 ACRKLEITSGRWDEIDLDAGEWLIPADRMKTRTAHWVPLSRQAVELLRAVRAHSG--GDY 305 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWP-ADAIEVQLAH 350 VF R+ P+ A+ +++++GY + HG R FST N D IE LAH Sbjct: 306 VFPHRDKPNTPMSPTALNEMLRRVGYRREMTVHGTRSIFSTWANAQPGANVDVIERCLAH 365 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 A VR YN Y D+RR ++Q WAD LD Sbjct: 366 APRDKVRAAYNRHAYKDERRALLQSWADVLD 396 >UniRef50_B9D1P3 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter rectus RM3267 RepID=B9D1P3_WOLRE Length = 395 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 116/388 (29%), Positives = 190/388 (48%), Gaps = 10/388 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT ++I KPK+K Y+ DG GLY++V SG+K + L YK D K K L +G +P + Sbjct: 8 LTDREIRGLKPKDKIYKKCDGRGLYIFVDPSGRKYFALEYKSPADNKIKRLNLGDFPEFS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L AR++ + + + GID VK + + +F + + W E K ++ Sbjct: 68 LAMAREERFKLEQKVRDGID-VKHESEINEQANFKKLAQRWLEIKAASVEPNTLNRDKRL 126 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + P I DI ++E++++ E +G++E + ++++ A Sbjct: 127 LEMYAYPFFENRSITDITVTDVIEILKKIEAKGSLEMMKRLYSLLNQIWQSAYYIAPNNV 186 Query: 180 NPAPDLADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 + + K ++KN+ L + I A +++ +SG I + A K TALR + Sbjct: 187 IASINYRFTFKKVKEKNYATLTKNADIKALWQSIDEYSGDIRTKYALKFAVLTALRPFNI 246 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 RS W+ +DF+ +I+I A MK R+ +P+S Q +ELL ++F Sbjct: 247 RSAKWEYIDFDEGVISIPAGDMKMREAFTLPLSRQALELLKEYKGYNLD-QIYLFGSLYG 305 Query: 299 KKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNE----HEWPADAIEVQLAHANG 353 + + EN + + ++++G+ E HGFR FST+ NE H D IE LAH Sbjct: 306 SARYMSENTLNVALRRMGFSKDEIVSHGFRAMFSTVCNENIDAHGLNFDIIEKCLAHKGT 365 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 +R YN AQ L + R MMQWWAD+LD Sbjct: 366 DKIRAAYNRAQNLAQMRAMMQWWADYLD 393 >UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8T8_ACIBT Length = 425 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 126/419 (30%), Positives = 197/419 (47%), Gaps = 36/419 (8%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML Q++ KP++KPYR LD + LY+ V SGKKVW ++ ++ KE +T G+YP ++L Sbjct: 1 MLKDTQVKNLKPQDKPYRKLDADRLYIEVRPSGKKVWIHKFSLNKKEGSITYGEYPSISL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR R ++ GI+PV + + + +F EW E K S Y Sbjct: 61 AEARYYHARDRALLAKGINPVAHRNETARLALETEQETFKKYGDEWKEKHKIDKSEDYKK 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR-GAMERANKARRRCGE------- 166 + DI P+IG L +D+ +L +I +R R+ K + GE Sbjct: 121 LIEYGLKTDIYPVIGHLHPKDVTSKHVLLIINNTMERIRTSTRSQKLKPSTGETTAIVNK 180 Query: 167 -----VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVS 221 + R I+ G A+ +P + +K + + L +I + + ++G+ + Sbjct: 181 TFIGMIMRSCIMKGLAEVDPTYAVKGVIKRQKINHARPLSMKEIRELKERIPLYNGAQTT 240 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASV----------MKGRKIHVVPMS 271 A L YT LRT E+R + W VD+EN+ IT MK KIH++P+S Sbjct: 241 RNALNFLFYTMLRTIEVRRLEWAWVDWENKTITFPERTFQEIIEGKRAMKNNKIHLLPLS 300 Query: 272 DQVVELLTTLSSITKPVSEFVFAG-----RNDKKKPICENAVLLVIKQIGYEGLESGHGF 326 DQ +L +IT +FVF+ +K + + + + + + S H Sbjct: 301 DQAFSILKEQYTITAKC-QFVFSSPMQLTLGKPEKMLGRSTLNFALDALKMNDV-SPHDA 358 Query: 327 RHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 R ST +NE IE QL+H + R YNHA++L RR M+QW+AD+LD K E Sbjct: 359 RATASTYLNELGSDDRWIEKQLSHTDNDKTRATYNHAKWLRNRRSMLQWYADFLDGKAE 417 >UniRef50_A4BQA0 Prophage CP4-like integrase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BQA0_9GAMM Length = 291 Score = 170 bits (431), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 158/274 (57%), Gaps = 1/274 (0%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLTV++I+ AK +KP++L D +GLYL+V +G K+W+ +Y+++G+EK L++G P + L Sbjct: 1 MLTVQEIKNAKASDKPWKLYDRDGLYLFVTPTGGKLWRGKYRVNGREKTLSLGPCPKVGL 60 Query: 61 QEARDKAWTARK-DISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 EAR+K AR+ D + V+ + + S +F A+ KEW + W+ +A+++ + Sbjct: 61 AEAREKWQDARRLDDPSAVKQVEKQASDSTTPTFLAVAKEWRTRQTPGWTRKHASQVWRS 120 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + DILP +G I +I+P +++ +I EDRGA E A + +R VF A+ G + Sbjct: 121 LEIDILPTLGPRPIDEIQPREIMALIEGIEDRGAGEIATRVLQRVRAVFSRAVALGYREA 180 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 NPA +L + +K +K L +++P F AL T+ G + + ++L T RT E+R Sbjct: 181 NPAGELHNHLKPRKKGQQTALATEELPTFLHALETYQGDAATRLGLRLLILTLARTSEVR 240 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQ 273 W +D E + T+ MK R+ VP+S Q Sbjct: 241 EAKWAELDREEGVWTVPGERMKNRREQRVPLSQQ 274 >UniRef50_A4VPC8 Site-specific recombinase, phage integrase family n=6 Tax=Proteobacteria RepID=A4VPC8_PSEU5 Length = 455 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/394 (27%), Positives = 189/394 (47%), Gaps = 16/394 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +LT +I++ KP ++ ++L DG GL+L V +G K+W+ +Y++ GKE + +G +P ++L Sbjct: 57 LLTDAKIKSVKPTDRDWKLSDGGGLFLLVKPTGCKLWRWKYRLQGKENLFAIGSFPQVSL 116 Query: 61 QEARDKAWTARKDISVGIDPVK-------------AKKASSNNNSFSAIYKEWYEHKKQV 107 EAR AR + GI P A++ + +SF+ + + + K V Sbjct: 117 AEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRARESSFAKVAQAYLTEIKPV 176 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 ++ + P G+ + DI Q+ ++ + GA A + + Sbjct: 177 FAYSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKTHGAWA-AIHVKGDLSAI 235 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 F +A+V G + NP P L ++ ++ + +QI F +AL + G + + ++ Sbjct: 236 FEFAVVRGLVEANPIPSLRGLLRAPASESKAAMTREQIQKFYQALRGYRGYPETALCLRL 295 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 + TA R E W+ DFE+ + A+ MK R+ H+ P+S Q + +L L IT Sbjct: 296 IALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARRDHISPLSTQAIAVLKGLQRITGG 355 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 ++F R+ K N + ++ + + H +R FST NE+ + DAIE Q Sbjct: 356 -GRYLFPHRSGKGF-TTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIERQ 413 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAH VR YN A LD+RR ++Q WA +L Sbjct: 414 LAHVESNKVRATYNKALLLDQRRSLLQAWAGYLS 447 >UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteriaceae RepID=B7N6K6_ECOLU Length = 415 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/395 (29%), Positives = 189/395 (47%), Gaps = 22/395 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT +I AKP+ Y L DG GLYL V SG+K W Y + K ++G YP++T Sbjct: 8 LTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVT 67 Query: 60 LQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQV--WSVG 111 L AR+ R+ + GIDP + +K N + + ++W + KK+ S Sbjct: 68 LAMARETRTKYRRLLWQGIDPRQHLAGIAEEKRLQNECTLEKVAEQWLKEKKRTSDLSED 127 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 +A ++ + + + P +G + +I P L E + E++G +E + R E+FR+A Sbjct: 128 HAKDVWRSLEMHVFPSLGSTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFA 187 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL--ATFSGSIVSLIATKVLR 229 I ++NPA +L K +K+N P LP ++ AL A+ LI ++L Sbjct: 188 ISEELIEFNPADNLVARFKKPKKQNMPALPPSELGRLMLALQNASIRKETRCLIEWELL- 246 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 T +R E S W ++D + I + MK + H VP+S Q + +L I +PVS Sbjct: 247 -TWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVL----QIMEPVS 301 Query: 290 E---FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEV 346 +VF + + + + ++G+ G HG R T H +P + +E Sbjct: 302 RHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGH-FPREVLES 360 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAH + YN + YL++RR +MQWW +++D Sbjct: 361 ALAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVD 395 >UniRef50_D0CDZ4 DNA integration/recombination/inversion protein n=4 Tax=Acinetobacter RepID=D0CDZ4_ACIBA Length = 402 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 130/400 (32%), Positives = 206/400 (51%), Gaps = 31/400 (7%) Query: 2 LTVKQIEAAKPK-EKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLM 58 L+ Q++ AKP K Y+L DG LYL + SG K W Y GK L++G YP + Sbjct: 9 LSALQVKKAKPDPNKMYKLSDGGNLYLRIDQSGSKYWIFNYTRPFLGKRNDLSLGTYPEV 68 Query: 59 TLQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 +L++AR +K I GIDP K++K N+F I + W HK+++ Sbjct: 69 SLEDARTIRDKYKKLIKQGIDPAMERIETKSQKQKEAENTFRVIAELWL-HKREL-EQKQ 126 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLE--VIRRFEDRGAMERANKARRRCGEVFRY 170 E + + D+ P I L + +++LE V +R +RGA+ A + + ++F+ Sbjct: 127 DEETIRRLNHDVYPYISELTFPQL-TLEILETKVFKRIVERGALSVAKRLKSDLNQIFKS 185 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQ--IPAFNKALATFS-----GSIVSLI 223 A +YNP D+ + + NFP + +Q P NK + +S + + + Sbjct: 186 ARKKKLIQYNPIEDIE--LPKPQAGNFPAVTEEQDLAPMLNK-IWNYSKLYPRCLLTTQV 242 Query: 224 ATKVLRYTALRTKELRSMLWKNVDF-ENRIITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 A K+ T R E+R ML K + E R AS K +++H+VP+SDQ +L+ ++ Sbjct: 243 ALKISVLTFQRPGEIR-MLKKEFYYREERCFKFTAS--KTKQLHIVPLSDQAFDLIESII 299 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPA 341 + P SE++F GR D K I +N + +K++GY G ++ HGFR T+++E E Sbjct: 300 DL-HPYSEYIFVGR-DGKTVISDNTINSALKRLGYGGEQTAHGFRATARTMLDEILEQRV 357 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 D IE QLAH + YN ++L+ RREMMQ WAD+L+ Sbjct: 358 DFIEHQLAHKVKDNNGTAYNRTKFLNNRREMMQEWADYLE 397 >UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUF6_ARCB4 Length = 405 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 109/381 (28%), Positives = 191/381 (50%), Gaps = 19/381 (4%) Query: 19 LLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGI 78 L DG LYL V +G K ++ + K K ++ G YP ++L+EAR+ A++ + I Sbjct: 25 LSDGENLYLVVKSNGTKFFRFDFSYTKKRKSMSFGIYPDISLKEARELREKAKEQLKQNI 84 Query: 79 DPVKAKKASSNN-NSFSAIYKEWYEHKKQVWS-VGYATELAKMFDDDILPIIGGLEIQDI 136 +P++AK ++ N ++F I ++W + W V Y ++ + P IG I I Sbjct: 85 NPIEAKSSNFGNISTFKYITEKWLKLMTSEWKHVTYELNENRL-RMHVYPAIGDKPISSI 143 Query: 137 EPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKK- 195 E + +L +I++ +++ E A + +++YA+ G K+N D+ D + KK Sbjct: 144 EILDILNIIQKLQEKEYFEIAERILNVIERIYKYAVTYGYTKHNIIADI-DKRTVFAKKI 202 Query: 196 ---NFPFLPADQIPAFNKALATF----SGSIVSLIATKVLRYTALRTKELRSMLWKNVDF 248 ++I K + ++ I ++ A + Y ALR +R + W V+F Sbjct: 203 VIHRATLTKENEIKELLKDIKSYGELYKADISTIYALNIAPYLALRPYNIRLLEWNEVNF 262 Query: 249 ENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAV 308 E + I A+ MK K V+P+S Q +E+L T+ + S++VF KP + + Sbjct: 263 EKEYLDIPANKMKTNKDFVLPLSKQALEILKTIKPYSFDRSKYVFPSPTSNLKPFSDATL 322 Query: 309 LLVIKQIGYEGLESGHGFRHEFSTI----MNEHEWPADAIEVQLAHANGGSVRGIYNH-- 362 + ++GY+ + HGFR FSTI + EH + +D IE LAHA ++ YN Sbjct: 323 NHALMKLGYKDKITSHGFRAMFSTIAHEKIKEHGFHSDIIESCLAHAETNKIKAAYNRES 382 Query: 363 -AQYLDKRREMMQWWADWLDE 382 +Y D+++ +MQWW DWL++ Sbjct: 383 KMKYYDEKKGLMQWWTDWLNK 403 >UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q072_9GAMM Length = 402 Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 117/399 (29%), Positives = 190/399 (47%), Gaps = 32/399 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT +IE AKP++KPYRL DG GL L V SG K W L+Y K+ ++ +G+YP + Sbjct: 8 LTTTEIEKAKPQDKPYRLYDGEGLLLNVASSGTKTWYLQYSKPFTKKKDMVNLGRYPTVN 67 Query: 60 LQEARDKAWTARKDISVGIDPVKA------KKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR + ++ +S IDP +K + F ++++EW KK YA Sbjct: 68 LADARKQKNYCQELLSKDIDPKTHFEEEARRKEYEHRTDFKSVFEEWLPTKK------YA 121 Query: 114 TELAKMFDD---DILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 + + ++ ++L +IG + + + V++ E G + + K R + Y Sbjct: 122 PKTVEKMENYIKEMLAVIGNKPVNQVTTEDCMRVLKPVESAGHLTKLEKMRSMMSQTIAY 181 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLR 229 AI TGRAK NP L + P L + +++ ++ G + A Sbjct: 182 AIATGRAKENPCIHLRGVFMTPETTHAPAILDEAGLTRLVQSIYSYHGHFATRKALLFAI 241 Query: 230 YTALRTKELRSMLWKNVDFE--NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 R E+R + W+++DFE N T + + + P+ Q VE+L + + Sbjct: 242 IMFARPGEIRHLKWQDIDFEYNNWQYTPNKTRKSTGVSMMSPLPTQAVEILKEMKAYKN- 300 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNE-----HEWPA 341 +E VF N +P+ EN + ++++G+E E + GFR T++ E + W Sbjct: 301 -AELVFPSSNSTSRPLSENTLNQALRRMGFENTEQTSQGFRAIARTVLEEKFKYDYRW-- 357 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 IE+QL H S YN Q+LD+RREMMQ WAD+L Sbjct: 358 --IELQLGHQVRDSNGRAYNRVQWLDERREMMQKWADYL 394 >UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus parasuis SH0165 RepID=B8F555_HAEPS Length = 405 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 113/392 (28%), Positives = 190/392 (48%), Gaps = 15/392 (3%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMTLQEA 63 +I+ AK K+KPY L DG GL+L V ++G K W+ Y I K + +G YP + L +A Sbjct: 12 EIKKAKAKDKPYTLTDGGGLFLLVSITGSKSWRFNYYQPITKKRTKMALGMYPTVNLSKA 71 Query: 64 RDKAWTARKDISVGIDP---VKAK---KASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 R +K ++ IDP +K K K N+F AI ++W + K Sbjct: 72 RALRDEYKKLLADDIDPQQYIKNKQQEKLQETQNTFLAIAEQWKQKKSAEIKPATLKNHW 131 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + P +G + I I+P+Q+ E++ RG + E+ R+A+ G Sbjct: 132 RRLELYAFPTLGNISITMIKPLQVTELVTPLFLRGVNSTGVLLLQTINEIMRFAVNRGII 191 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV--SLIATKVLRYTALRT 235 ++N D+AD + ++ P + + +P F AL ++ SLI +L T R Sbjct: 192 EFNKCADIADTFVKSKSEHHPTIRPEHLPEFFAALRNSHADLIIKSLIEFSLL--TIARP 249 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 E + W +DFE + I A MK ++ +P+S Q V++L L IT S ++F Sbjct: 250 SEAANAKWAEIDFEQSLWNIPAERMKMKQPFTIPLSIQAVKILKKLQVITGR-SLYIFQS 308 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH--EWPADAIEVQLAHANG 353 +PI + IKQ+GY+G + HG R +T ++E + + IE L+H + Sbjct: 309 IKKPSQPIGKQIANNTIKQMGYKGKLTSHGLRSIANTYLSEKFIDLNVEIIEACLSHKSQ 368 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 VR YN + YL++R+ +M W +++E ++ Sbjct: 369 NQVRNAYNRSTYLEQRKPLMNDWGQFVEESMK 400 >UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO Length = 436 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 118/426 (27%), Positives = 209/426 (49%), Gaps = 44/426 (10%) Query: 3 TVKQIEAAKPKEKP--YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 T K +E KP ++ YR+ G GL L V G K W+L+Y+ + K+K L +G +P +TL Sbjct: 10 THKHVEHLKPSDRDEWYRVAGGTGLRLLVRKQGGKYWRLKYRFNKKQKTLALGVFPNVTL 69 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQ----VWSVGYATEL 116 ++A+D A+ ++ G+DP K ++N+NS +W E++ Q VWS + + Sbjct: 70 KQAKDATIKAKAMLADGVDPGDTKSTNTNDNSLRFYAAKWLEYQSQATARVWSEDHKARV 129 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 K ++ IL +G I D+ + +I E +G E A + +F Y + Sbjct: 130 WKRLENGILKKLGDKLITDVRKEDVRRLIENVEAKGHHETAKRIADDTQRLFEYVVDQYS 189 Query: 177 AKYNPAPDLADAMKGYRKK--NFPFLPADQIPAFNKALATF--SGSIVSLIATKVLRYTA 232 + + L +K K + L +P F + LA + +G ++ +A ++L T Sbjct: 190 LEDDVDIRLLRPVKVISKPVVHREALDIKNLPFFMQDLANYTQTGRELTALAIELLILTF 249 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R+ ELR W+ D +N++ +I A MK ++ H VP+S + ++++ + IT E + Sbjct: 250 VRSGELRGARWEEFDLDNKVWSIPAERMKMKRPHEVPLSAKALDVIKRIKRITGHY-ELL 308 Query: 293 FAGRNDKKKPICENAVLLVIKQIGY----EGLESG------------------------- 323 F +P+ +N + + ++GY + + G Sbjct: 309 FPSETKPDEPMSDNTMRQAMFKMGYFPKAKDTKDGKIAKTYLKYQDNAHYPDGRLKEKAV 368 Query: 324 -HGFRHEFSTIMNE--HEWPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADW 379 HGFR S+ ++E ++ +DAIE QLAH V+ Y+H A+Y D+R EMM+WW D+ Sbjct: 369 PHGFRTMASSTLHESDQKFRSDAIERQLAHVEQNKVKDAYSHKAEYWDERVEMMEWWGDF 428 Query: 380 LDEKVE 385 ++E+ E Sbjct: 429 VNEQRE 434 >UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammaproteobacteria RepID=A7ZQ61_ECO24 Length = 436 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/396 (28%), Positives = 190/396 (47%), Gaps = 15/396 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYV-PVS--GKKVWQLRYKI--DGKEKILTVGKYP 56 LT +I++ KP EK L DG+GL L + P++ GKK W RY + K +++G YP Sbjct: 35 LTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTKVSLGTYP 94 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSV 110 +TL +AR ++ GIDP +N ++F A+ K+W + K + + Sbjct: 95 HLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDEKVKTSGI 154 Query: 111 G--YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 +A ++ + + +I +G I++I P L + + E RG +E + R E+F Sbjct: 155 SQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRIISRLNEIF 214 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 RYA ++NPA +L +K+N P LP ++P F AL S + + + + Sbjct: 215 RYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLETRLLIEWQ 274 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 T +R E W ++D E + I A MK +K H VP+S + + +L + I+ Sbjct: 275 LLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLMKVISGH- 333 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQ 347 E+VF + E I ++G+ G HG R T E ++ D +E Sbjct: 334 REWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRTDVLEAA 393 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 LAH+ + YN A+YL +R +MQWW+D++ + Sbjct: 394 LAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVSSQ 429 >UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellaceae RepID=B3GXJ8_ACTP7 Length = 406 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 111/396 (28%), Positives = 191/396 (48%), Gaps = 21/396 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L ++E AK K Y L DG GLYL V S K W Y+ I + LT+G YP ++ Sbjct: 8 LNNTEVEKAKIKPAEYSLSDGYGLYLRVKPSKVKTWIFNYQEPITKRRTNLTIGDYPAIS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHK-KQVWSVGY 112 + EAR R ++ GIDP K+ N+N+F + + W E + K+V + Sbjct: 68 IAEARTIREEYRALLAKGIDPKTNKEEQERQQAEQNDNTFLKLAQLWKEKRSKEVEPLTM 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A A++ ++ + P++G I I P L++ ++ D+G + ++ ++ Y + Sbjct: 128 AKNWARL-ENHLFPVLGHYAIDKITPPILIKAVKPLNDKGINDTLHRILNLANQILNYGV 186 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G +N +++DA + + P + ++P K +A F S + + ++ Sbjct: 187 TVGVLPFNACQNVSDAYHKETQTHHPAIKPSELP---KLIADFQNSNRDFLTKVLFKWQL 243 Query: 233 L---RTKELRSMLWKNVDFENRIITIDASVMK----GRKIHVVPMSDQVVELLTTLSSIT 285 L R E S+ W +DF+ + I A MK G+ H VP+S Q++++L +L IT Sbjct: 244 LSMVRPAEAVSIEWAEIDFDKNLWFIPAEKMKKTRKGQFPHTVPLSSQMLKILESLRPIT 303 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 V++FVF + K + + + +++IGY G++ HG R T + + A E Sbjct: 304 G-VNKFVFPHYSQPNKSMSKETITNALRKIGYRGIQDSHGLRSIARTYLEDQAVDFRAAE 362 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAH G YN A+Y++ RR +MQ W D+ + Sbjct: 363 SCLAHRIGNETSQAYNRAEYIELRRPLMQLWGDYCE 398 >UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobacillus minor 202 RepID=C8KXV2_9PAST Length = 406 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 110/391 (28%), Positives = 190/391 (48%), Gaps = 12/391 (3%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMTLQEA 63 +I+ AKP++KPY + DG GL+L V +G K W+ Y I K + +G YP +TL +A Sbjct: 12 EIKKAKPEDKPYTMTDGQGLFLIVSPTGSKSWRFNYYRPISKKRAKIALGMYPAITLSKA 71 Query: 64 RDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 R + ++ GIDP ++ +K N+ AI ++W + K+ Sbjct: 72 RALRDEYKHLLANGIDPQEHCKQLELQKLQFKQNTLFAIAEKWKQKKETEVKEKTLKPRW 131 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 +M + I P +G L I +I P++L IR DRG + E+ +A+ G Sbjct: 132 RMLEKYIFPELGDLPISEISPLRLSNTIRPVFDRGIANTGLVIIQMVNEIMVFAVNLGII 191 Query: 178 KYNPAPDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 ++N ++A + K+ P + +++P F AL + +V + + T +R Sbjct: 192 EFNKCSNVASTFNVKKTTKHQPTIRPEKLPEFMSALRDSAVDLVVKLLIEFSLLTMVRPN 251 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E + W ++F++ + I A MK +K VP+S Q ++LL L IT S F+F Sbjct: 252 EAANAKWDEINFDDALWHIPAERMKMKKAFTVPLSSQAIKLLNKLKQITG-RSRFIFQSP 310 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH--EWPADAIEVQLAHANGG 354 +KP+ I++IGY G + HG R ST ++E + + IE L+H Sbjct: 311 RAPQKPMSSVTANAAIRRIGYNGKLTSHGLRSIASTYLSEKFIDINVEIIEACLSHQGKN 370 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +R YN + YL++R+ +M W +++E ++ Sbjct: 371 PIRNAYNRSTYLEQRKLLMADWGQFVEESMK 401 >UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetobacter RepID=C6RSU9_ACIRA Length = 426 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 122/400 (30%), Positives = 204/400 (51%), Gaps = 30/400 (7%) Query: 4 VKQIEAAKPK--EKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 ++ I++ P +K RL DG GL L + +G +W+ Y + K +TVG YP M+ Sbjct: 17 LRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPVSKKRNTMTVGNYPAMS 76 Query: 60 LQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR+ R ++ G DP V+ K+ +F ++ E Y+ K+++ Sbjct: 77 LAKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSV-AELYKSKQRLAEATVK 135 Query: 114 TE---LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 K++ D +G + I DI P L +VI + E++G +E A + R + +VFR+ Sbjct: 136 RNDGIFEKLYRD-----VGNMPISDITPRDLAKVIEKDENKGHIESAMRIRSKASQVFRF 190 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSL-IATKV 227 A+ G + + A DLA + K ++ L P D + + +V + +A ++ Sbjct: 191 AVKMGLCERDVAQDLAGTITQREKNHYSALTDPFD-FACLLFDIDHYESQLVHVKLALQL 249 Query: 228 LRYTALRTKELRSMLWKNVDFENRI--ITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 +R ELR+ W +++FE T + K H+VP+S Q + +L + T Sbjct: 250 APLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVPLSTQAIAILKEALNFT 309 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNE-HEWPAD 342 S+FVF R+DK +PI + ++ + ++++GY G E +GHGFR T+++E E+P D Sbjct: 310 NN-SDFVFPSRSDKHRPISDMSINMALRRMGY-GKEDMTGHGFRAIARTLLDEVLEFPLD 367 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 IE QLAH YN ++LDKRR MMQ W+D+ DE Sbjct: 368 IIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSDYCDE 407 >UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria RepID=Q3SF40_THIDA Length = 440 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 119/425 (28%), Positives = 196/425 (46%), Gaps = 47/425 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKI-DGKEKILTVGKYPLMTL 60 L+ ++ KP ++ + DG GLY+ + +GK+ W L+Y+I GK++ + +G YP +L Sbjct: 3 LSDSKLRTLKPADRVFSESDGGGLYIEIMPTGKRRWGLKYRIPTGKQETIRLGDYPAYSL 62 Query: 61 QEARDKAWTARKDISV----GIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVG----- 111 +AR T R D G+ P+ K+ + KE + + W + Sbjct: 63 ADAR----TWRDDCKALAGRGLSPMALKRGDPIPEDAAPAAKELAQFFIRNWCMKAVEKA 118 Query: 112 --------------------YAT----------ELAKMFDDDILPIIGGLEIQDIEPMQL 141 YA + ++ D D +P IG +I D+ + Sbjct: 119 KAKEAEAKAADTVEAFAWRWYAEIVEPANSNPRNIKRILDKDAIPAIGSKQIADVTVTDI 178 Query: 142 LEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP 201 L + + ++RGA + A + R +F YAI + +NPA + K L Sbjct: 179 LAITDKIKNRGADQMALQTRNVLKRLFAYAIAREKTTFNPAAAIEAKFIAQAKSRDVALS 238 Query: 202 ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMK 261 ++I +A+ S +A +L +R EL W+ +D E I MK Sbjct: 239 PEEIGRLLRAIYQSSMKRAHKLALHLLILCMVRKSELTEAKWEELDLEKAEWAIPGERMK 298 Query: 262 GRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE 321 K H+VP+S Q V + L + SE+VF R+ KKPI NA+ V++ + + + Sbjct: 299 KDKPHLVPLSRQAVAMFEELKGLASG-SEWVFPSRSSLKKPIAHNALNTVVRALEADVRD 357 Query: 322 -SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 H FR ST ++E + +D IE LAH G +RG+YN AQY D+RR+M+QWWAD++ Sbjct: 358 FVIHDFRRTASTHLHEAGFNSDWIEKALAHETKG-IRGVYNRAQYADQRRDMLQWWADFV 416 Query: 381 DEKVE 385 D +++ Sbjct: 417 DSQIQ 421 >UniRef50_A6Q4N1 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4N1_NITSB Length = 412 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 111/402 (27%), Positives = 197/402 (49%), Gaps = 25/402 (6%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARD 65 Q+ AKPKEK Y+L DG GLY+ + +G+K+++L Y GK T+G YP ++L +AR Sbjct: 12 QLRNAKPKEKNYKLRDGEGLYILIKPNGRKIFRLDYVYAGKRNTYTIGDYPQISLAQARK 71 Query: 66 KAWTARKDISVGIDPVKAKKAS-------SNNNSFSAIYKEWYEHK-KQVWSVGYATELA 117 + ++ I GIDP + K+ +N S + + + +HK K+V Sbjct: 72 IKYEVKELIKNGIDPNRYKQEQKRIKELEANKKFTSFVIERFIQHKAKEVSKARLQKNYI 131 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRF------EDRGAMERANKAR---RRCGEVF 168 F + I P IG ++I ++ ++++++ +D + + KAR R +F Sbjct: 132 NTFANYITPFIGEVKIDEVTKQDIIKIVKNTYSTKLQKDNRSTGKTYKAREVYRLLKSLF 191 Query: 169 RYAIVTGRAKYNPAP--DLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 +AI + NPA D+ + ++ + ++I + + + L + Sbjct: 192 DFAIHNDYTQTNPAVGIDIDSLIPKHKPTRHKAVTNERIKEIYQKICSLQNPYFRL-PLQ 250 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR-KIHVVPMSDQVVELLTTLSSIT 285 + TA+R + ++ W DF+ R+I A MK + + +P++D +V+++ +I Sbjct: 251 YIALTAVRFGNVANLKWDYKDFDKRVIIYPAEAMKTKNQPFRIPLTDAIVKVIQQAKAIA 310 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE----WPA 341 P SE VF + KPI +N + V+K E + HGFR F TI EH+ Sbjct: 311 SPYSEIVFGSPINAHKPISDNTLRKVLKIDLNEPEQDLHGFRSSFETIALEHQKEHGCSF 370 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +AIE QL H G V Y + +L+ R+E++ WWA++L+ + Sbjct: 371 EAIEAQLHHNIGSKVTQSYLRSDFLEDRKELLNWWANYLNSQ 412 >UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepID=Q5E028_VIBF1 Length = 399 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 113/399 (28%), Positives = 198/399 (49%), Gaps = 27/399 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59 LT ++I++A P K + L DG GL L V +G K WQ ++ KI + +G YP ++ Sbjct: 8 LTDRKIKSAAPTGKEFTLSDGEGLQLRVRPTGAKSWQFKFSDPVTRKIQKIALGPYPELS 67 Query: 60 LQEARDKAWTARKDISVGIDP--------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVG 111 L AR K R ++ I+P ++AK+ ++ +F + ++W+E KK+ S Sbjct: 68 LANARSKTTEYRTLLAQKINPKSFEQSKELEAKRVQTS--TFIVVAEQWFERKKETVSPA 125 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 ++ + + I P + + + I ++ ++V+R E G + + ++ Y+ Sbjct: 126 HSYREWRTLEKYIFPHMSKIPVATITAVETIDVLRPLEKEGKYSTVKRICQSLNQIMDYS 185 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPA---DQIPAFNKALATFSGSIVSLIATKVL 228 + G NP LA +K +RK +P +Q+P F K L + S TK+L Sbjct: 186 VNHGLIHANP---LAKIIKVFRKNTVLHMPTIRPEQLPDFLKRLHSCS---TIQTKTKLL 239 Query: 229 ----RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 +T R KE + W ++D E + TI A MK RK H +P++ Q + +L + Sbjct: 240 ILWQLHTMTRPKEAATTRWIDIDLEKGVWTIPAENMKRRKEHRIPLTSQAINILNQIRLQ 299 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQ-IGYEGLESGHGFRHEFSTIMNEHEWPADA 343 +K ++VF G D + IK+ +G + HG R ST ++E+ + + Sbjct: 300 SKRC-DYVFPGERDINSHVSLFTANAAIKRSLGLKDELVAHGLRAIASTALHEYGFDSLL 358 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 IE L+HA+ VR YN + YL++R+E+M WW++++DE Sbjct: 359 IEACLSHADQNEVRASYNRSDYLEQRKEIMCWWSNYIDE 397 >UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID=B2UB26_RALPJ Length = 415 Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 109/395 (27%), Positives = 187/395 (47%), Gaps = 15/395 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKPKE+PY+L DG GL++ V G K W+ +Y + GK + + +G YP + + Sbjct: 8 LTPTRINNAKPKEQPYKLTDGGGLFVLVHPGGSKAWRYQYMLSGKRRSVLIGSYPEIGVS 67 Query: 62 EARDKAWTARKDISVGIDPV----------KAKKA-SSNNNSFSAIYKEWYEHKKQVWSV 110 +ARD+ R + G DP KAK++ + F A +W + + + Sbjct: 68 DARDRHAEYRAMVEQGTDPAEHRRQDKAERKAKESLQEDEGLFKAFSLKWIDERLATKTE 127 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 GY +++ + + P+IG ++D++P LLE+I R A R +++ Y Sbjct: 128 GYRSQIKSRLERFVWPVIGRKALEDVKPSHLLEIIE--ARRATPNTAEGVRVIIQQIYNY 185 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 AI + NPA L + + ++ L ++ AF +AL + A ++L Y Sbjct: 186 AIQKLLVESNPAVPLRGVITVPKAEHHRHLSESELGAFWRALGRQGAHPATTAAARLLVY 245 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 + R E+ W D + I A MK R+ H V +S Q +ELL + +I+ Sbjct: 246 SMCRKSEVLRAKWAEFDLDKAQWDIPAERMKSRRPHRVYLSRQAIELLEIMRAISGD-GV 304 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEVQLA 349 +V P+ E + + K++ + E S HG R +T++ EH + D +E+ LA Sbjct: 305 YVLPSVKIASVPLAEATLNHLFKRLDFGVPEFSPHGTRGTAATLLREHGFSRDVVELLLA 364 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H Y+H + +RR+ +Q+ AD +D + Sbjct: 365 HTERSQTAASYHHHELEAERRKALQYLADEIDRQA 399 >UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25017 RepID=B0U0U5_FRAP2 Length = 398 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 125/399 (31%), Positives = 191/399 (47%), Gaps = 25/399 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT +I+ K K R++D GLYL V +G K WQLR+ I+ K K +G YP L Sbjct: 1 MLTETKIKKIKATGKEQRVIDTLGLYLRVDKNGNKTWQLRHTINEKRKWFGLGSYPSTNL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYE-HKKQVWSVGYATELAKM 119 EAR + R+ I G D + AK + + ++ E KK S + +L + Sbjct: 61 NEARKLSAELRERIDNGED-ILAKPDAKKVIYVKDLVAQYIEFQKKNSSSEDFIKKLTNI 119 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + I+P IG +IQ I+ ++V+ D+GA NK + R A + Sbjct: 120 SKNHIIPKIGNRDIQTIKRKDCIDVLEPLIDKGATR--NKVLSALKGISRLARHNELIEN 177 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF---------SGSIVSLIATKVLRY 230 +P D+A A+ Y+ + P + P NK+L G+ +S A K+L Y Sbjct: 178 DPTHDIARALPQYKAQPMPHIS----PLHNKSLLKELLLDLDNYTKGNYISRYALKLLPY 233 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 LR EL S+ W D EN I I A +MK RK H+V +S Q +++ L + Sbjct: 234 IVLRPIELVSLQWDFYDAENSRIIIPAEIMKMRKDHIVCLSRQAKQIIEELKDLQGGFKY 293 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGL----ESGHGFRHEFSTIMNE----HEWPAD 342 F + D I ++ I+ +GY G+ ++ HGFRH +ST ++E + + Sbjct: 294 FFPSYYKDNHDHINYESLAKAIRSMGYNGIDKPKQTLHGFRHIYSTAIHELQEQYHFSEL 353 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AIE+ LAH + R YN A L +R ++MQ +ADW+D Sbjct: 354 AIELVLAHTDKNKSRASYNFADKLSERAKIMQVYADWID 392 >UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophilus influenzae RepID=Q4QNN7_HAEI8 Length = 403 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 109/391 (27%), Positives = 193/391 (49%), Gaps = 19/391 (4%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMTLQEA 63 +I+ AK KPY L DG GL+L + +G K W+ Y I K +++G YP +TL +A Sbjct: 12 EIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRPITKKRAKISLGLYPAITLSKA 71 Query: 64 RDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHK-KQVWSVGYATEL 116 R+ R+ ++ IDP + K NN+F AI +W + K ++ SV + Sbjct: 72 RELREQYRQLLANKIDPQEYIKQHELLQLQRQNNTFFAISTQWKQKKVSEIKSVTLKSRW 131 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + P +G I +I P QL + + +RG E+ +A+ G Sbjct: 132 -RTLEKYAFPYLGDNPIAEITPQQLHDTVIPLFERGVSHTGKLVIALVNEIMNFAVNKGI 190 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL--- 233 ++N +++ A R + P + +++P F AL S + L+ ++ ++ L Sbjct: 191 IEFNKCINVSKAFNVNRTTHHPTIRPEKLPEFMSAL---RHSHIDLMVKYLIEFSLLTIT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E + W +DFE + I A MK +K +P+S QV+++L L +I+ S F+F Sbjct: 248 RPSEAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG-RSRFIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE--HEWPADAIEVQLAHA 351 + ++P+ ++ IK++GY+ + HG R ST ++E E + +E L+H Sbjct: 307 QSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSETFTEMNLEILEACLSHQ 366 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + VR YN + YL++R+ +M W D+++E Sbjct: 367 SKNQVRNAYNRSTYLEQRKPLMNAWGDFVEE 397 >UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_HAES1 Length = 418 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/401 (26%), Positives = 203/401 (50%), Gaps = 23/401 (5%) Query: 1 MLTVKQIEAAKPKEKPY------RLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTV 52 +L ++I+AAKPK +L DGNGLYL V +G K+W+ Y + K +++ Sbjct: 7 LLNNRKIDAAKPKADEQGNLTDNKLQDGNGLYLLVKATGSKLWRFNYYKPLTKKRTEMSL 66 Query: 53 GKYPLMTLQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHK-- 104 G YP ++L +AR+ R ++ IDP VK K NN++ A+ W+E++ Sbjct: 67 GAYPDVSLAQARELRNQYRSLLAQDIDPNEHRQNVKQAKLDEINNTYEAVAWAWFEYRQT 126 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 K+ +S GY ++A + +LP G L I I L+ ++++D G +E+ + ++ Sbjct: 127 KKNFSEGYKKDVASLIKRCLLPHFGSLPISQITAPMALKAFKQYQDEGTLEKLKRTIQKH 186 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 E+ +A+ +NP +++ ++F + + +P F + T + + ++L Sbjct: 187 NEIMNFALHRDLISFNPTANISKEFDSPTVEHFKTIQPEDLPEF---MYTLNNAQINLRT 243 Query: 225 TKVLRY---TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTL 281 ++ + T R E ++++D ++R+ TI A MK H + +S Q + LL + Sbjct: 244 RYLILWQLLTMTRPNEAAKARYEDIDEKSRLWTIPAENMKRGIAHKITLSRQAMALLREI 303 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPA 341 ++ + ++F + + IK++GY+G HG R ST +NE + + Sbjct: 304 KKLSGGKT-YLFPNVKYPQTHVNTQTANAAIKRMGYQGKLVAHGLRSIASTYLNEKGYNS 362 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + IEV L+H N ++ Y+ + L++R +++Q WAD+++E Sbjct: 363 ELIEVALSHINSDRIKAAYDRGERLEQRFKLLQVWADFVEE 403 >UniRef50_D1Y3S1 Site-specific recombinase, phage integrase family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3S1_9BACT Length = 433 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 119/408 (29%), Positives = 203/408 (49%), Gaps = 39/408 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG-KEKILTVGKYPLMTL 60 L + IE + K+ PY L DG GLYL V +G+KVW RY+ +G +E+ +T+G+YP + + Sbjct: 3 LNITAIERSTGKDAPYLLNDGGGLYLKVCPNGRKVWLYRYRDEGERERKVTLGEYPALDM 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYE-HKKQVWSVGYATELAKM 119 AR++ R I G P + +F + + WYE KK+ + Y + + Sbjct: 63 AAARERKEATRARILRGEAP-----QDTALLTFEQVARRWYEKQKKRGLAPRYLETIRQR 117 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA----IVTG 175 + ++P +G ++ I+ +L+ V+ RG +E +++ ++++YA I+ G Sbjct: 118 LECYLIPPLGARPLEQIQRAELVAVVEGVAKRGIVESSHRVGVILSQIYQYAEDAGILPG 177 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 A L+ + + ++F + P D + + + + G VS + L + AL Sbjct: 178 GGALAAA-SLSRVLPKTKTEHFATVSKPED-VRQVMECIRDYRGFAVS----RCLEFIAL 231 Query: 234 ---RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 R+ E R W+ +D E R+ TI A MK R H VP+S Q + LL + ++ E Sbjct: 232 TFVRSGEARRARWREIDLEARLWTIPAEHMKRRIAHKVPLSRQALALLEEMKPLSCSGPE 291 Query: 291 ---FV--FAGRNDKKKPICENAVLLVIKQI-------GYEGLE-----SGHGFRHEFSTI 333 FV GR+ + + ++L ++ GL+ + HG R STI Sbjct: 292 SLIFVSGLTGRSSSSGILTDMSLLRPFREALKRNPERAAAGLKPFPKMTVHGLRSMASTI 351 Query: 334 MNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 +NE + IE+QL+H + +R IYN+++ LD RR +MQ+WADWLD Sbjct: 352 LNEERQGGELIEIQLSHLDADRIRLIYNNSELLDDRRALMQFWADWLD 399 >UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=cellular organisms RepID=Q3JXH9_BURP1 Length = 414 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 116/390 (29%), Positives = 190/390 (48%), Gaps = 8/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEK-ILTVGKYPLMTL 60 L +I+A KPK Y + DG GL L V SG K W+ RY + GK++ ++T+G+YP ++L Sbjct: 13 LNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIGEYPAVSL 72 Query: 61 QEARDKAWTARKDISVGIDPVK-AKKASSNNNSFSAIYK---EWYEHKKQVWSVGYATEL 116 AR++A + ++ G+ PV A+K S I++ W E + S Y Sbjct: 73 TAARERARRYAEIVAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTT 132 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + DI P IGG + D+ P +L + R + RGA + A R ++ YAI Sbjct: 133 RRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQL 192 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NPA + + L ++I +A+ S +A +L T +R Sbjct: 193 VTSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVLTMVRKS 252 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 EL W D + I I A MK + H V ++ Q V +L L + T+ ++VF Sbjct: 253 ELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHA-TRTSHQYVFPSS 311 Query: 297 NDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 +PI ++ + ++ + + H FR ST ++E P+DAIE LAH+ G Sbjct: 312 RGADRPIAKSTLNQAVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKG- 370 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 ++G+YN A+Y D+RR + WAD++D +++ Sbjct: 371 IKGVYNRAEYADERRRITALWADFVDAQID 400 >UniRef50_B8F737 Phage integrase family site specific recombinase n=4 Tax=Pasteurellaceae RepID=B8F737_HAEPS Length = 416 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 129/410 (31%), Positives = 196/410 (47%), Gaps = 34/410 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKI-LTVGKYPLMT 59 L QI AKPK+K Y L DG GL L V SG KV+ Y K K + T+G+YP ++ Sbjct: 5 LVGTQIRQAKPKDKDYPLSDGGGLRLIVRKSGAKVFVFNYYKPYTKTRTNFTIGEYPEIS 64 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKK--QVWSVG 111 L +AR + AR ++ IDPV K ++A+ +F + +W+E +K +S Sbjct: 65 LIQARKEHAKARALLAQNIDPVRQRELDKQEQANRLELTFEKMAVKWFEDRKLKADFSER 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 A + +F ILP G I +I P+ + ++ E G +E K + EV RYA Sbjct: 125 TAKDTWALFKRHILPHFGNYPISEITPLIAINALKPLERAGKLETIRKTIAKINEVMRYA 184 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL------ATFSGSIVSLIAT 225 + G N D+ ++ + D++ F +A F ++ A Sbjct: 185 LHRGLIATNNLSDIGKEFDKPTPQSMNTIQPDELAEFLQAFYQKRDKGRFGLNV--FYAV 242 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK------IHVVPMSDQVVELLT 279 ++ T R E+ W+++D + R+ V KG K H+V +S Q +ELL Sbjct: 243 MLVLLTGGRPSEIAKAKWEDIDEKERLWAY--QVQKGNKNLPEGRTHIVTLSRQSIELLN 300 Query: 280 TLSSITKPV-----SEFVFAGRNDKKKP--ICENAVLLVIKQIGYEGLESGHGFRHEFST 332 + + V S FVFA KK E +IK IG + L + HG RH FST Sbjct: 301 KMRHFNEVVNANIQSPFVFASVASKKTGHLSIETMRKAIIKSIGEDRL-TTHGIRHLFST 359 Query: 333 IMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 +NE + AD IE L+H + +RG YN A YL++R +M+Q WAD+++E Sbjct: 360 SLNEQNFNADWIERALSHKDRNRIRGSYNKANYLEQRFDMLQHWADYVEE 409 >UniRef50_C9M6R5 Site-specific recombinase, phage integrase family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6R5_9BACT Length = 393 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 119/387 (30%), Positives = 186/387 (48%), Gaps = 14/387 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I+ K E Y +LDGNGLYL V +G+KVW +RY ID K LT+G YP+M L Sbjct: 1 MLTDTAIKRLKLGETRYLILDGNGLYLLVCPNGRKVWTVRYWIDKKLHQLTIGDYPMMGL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 EAR + + D + K A+ +F +EWYE +K+ A L + Sbjct: 61 AEARAERDEIKNDARY-----EKKVAAPMGLTFGEFAREWYEKRKRPKLSKSAQALYDLR 115 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P++ + +I ++++ + + ++ E + V YA+ T + Y+ Sbjct: 116 FRYLDPLMAR-PLTEITREEIVDTLHKLSEQHPAETVRRTGGIVSMVMGYALATRKIPYD 174 Query: 181 PAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 P+ L + + K P A +I +AL + S+V A +++ YT +R+ E Sbjct: 175 PSSQLGLELPIHVSKPMPAATHASEIGVLMRALESID-SLVLRSAIQLIAYTFVRSGEAC 233 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 W +D + + ++ A K + H+VP+S Q V +L TL +F RN Sbjct: 234 LARWDEIDLKEGLWSVPAEHTKTKLDHLVPLSRQAVMILDTLRRRFGGKGH-IFPSRNRG 292 Query: 300 KK--PICENAVLLVIKQIGYEGLESG---HGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 K P + ++ ++ + E HGFR ST++NEH+W D IE QL H Sbjct: 293 KLVIPSTLSREMVKLQSLPLEARPIPTVVHGFRATASTVLNEHQWNRDVIEAQLGHFERN 352 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 R YN A+YL R MMQW+AD+LD Sbjct: 353 KSRRAYNRAEYLPIRISMMQWYADYLD 379 >UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresistens RepID=C6RLT7_ACIRA Length = 405 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 124/410 (30%), Positives = 203/410 (49%), Gaps = 36/410 (8%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML +I+ K K+K YR+ D GL L V +G K W+ RY+ K+LT+G YP ++L Sbjct: 1 MLNDLKIKQLKAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPKMLTIGPYPEISL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYAT 114 ARDK R ++ +DPV +K + ++ ++F +I E+ E K S + Sbjct: 61 SYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEWYE 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIR------RFEDRGAME-RANKARRRCGEV 167 + F DI P+IG I+++ + ++ R RG E +A R+ C EV Sbjct: 121 NRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQICAEV 180 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKA-----LATFSGSIVSL 222 +YAI+T + +P A++ Y ++ P A + +K + + G+ + Sbjct: 181 MQYAIITLKIINDPTI----ALRSYIRRP-PVNHATPLEEKDKKVILALINQYGGTTGTQ 235 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITI----DASV------MKGRKIHVVPMSD 272 A + Y+ LRT E+R V+ ++ +TI +A + MK + HVVP+S Sbjct: 236 NALRTALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLST 295 Query: 273 QVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFST 332 Q++E++ + P S ++F G +D + +N + + +G G + H FR ST Sbjct: 296 QMLEIIKEQLQLY-PDSIYLFPG-DDGISMLGKNTLNEALVNMGL-GHITMHDFRATAST 352 Query: 333 IMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 +NE + D IE+QLAH +G R YNHA +L RR+MMQ AD +D Sbjct: 353 YLNEQNYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMMQHLADTIDH 402 >UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE42_ECOK1 Length = 418 Score = 157 bits (398), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 117/395 (29%), Positives = 197/395 (49%), Gaps = 18/395 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL--M 58 MLT +++ KP++K Y++ D +GLY+ V SG ++ Y+I+G+ + L +G+Y + Sbjct: 1 MLTDTKLKNLKPQDKLYKVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGI 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAK----KASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 +L EAR++ A+K + G P AK K +F A++ + Y + A Sbjct: 61 SLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAETF-AVHTDSYMKHVILADSTRAM 119 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + A + D DILP++G + +I + ++ R +RG A +AR V+R+A Sbjct: 120 KQA-VIDRDILPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDR 178 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 G +NPA D+ + K L ++I F + L +A K++ T +R Sbjct: 179 GHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVR 238 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E + W +DF+ TI + MKG + HV+ + Q ++L L + SE++ Sbjct: 239 KGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYLPKQAQDILVGL-QMCAGGSEYLVP 297 Query: 295 GRNDKKKPICENAVLLVI----KQIGYEGLE----SGHGFRHEFSTIMNEHEWPADAIEV 346 GR + +KP+ A+ +I K I +G + H R ST+++E +P+D IE Sbjct: 298 GRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEK 357 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAH G VR +YN A+Y +R M+Q WAD +D Sbjct: 358 ALAHEQKG-VRAVYNKAEYARQRAYMLQQWADMID 391 >UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2Y2_9BACT Length = 406 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/393 (28%), Positives = 189/393 (48%), Gaps = 47/393 (11%) Query: 17 YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEAR----DKAWTARK 72 Y L DG+GLYL + GKK W +R + G+E+ + +G+YP+M+LQEAR D+ AR Sbjct: 17 YMLFDGDGLYLRISTKGKKKWLIRSFVGGRERKVVIGEYPVMSLQEARRERDDRKMKART 76 Query: 73 DISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLE 132 +S+ + +F ++ W + K++ S + + + + +LP + Sbjct: 77 GVSI----------RNKTVTFGDVFARWLKKKEKAVSPDHYKIIKRRIEMYLLPYLANRP 126 Query: 133 IQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGY 192 + DI +LLEV++ +RG ++ A + + A G N A DL+ ++ + Sbjct: 127 VADISRPELLEVLQHPIERGLIDTARRTGALARSILDAAADKGEVALNIAADLSRSLPEW 186 Query: 193 RKKNF--PFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNV-DFE 249 +NF F P ++ A+ + IV A +++ YT +R ELR W + + E Sbjct: 187 EVRNFKSAFDPR-EVRRLLLAIDCYPRQIVRY-ALRMVSYTFVRRSELRRATWAEIHEDE 244 Query: 250 NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPI------ 303 I + A K ++I +VP+S Q +E+L + I ++ + G+ + KPI Sbjct: 245 WHIPVVHA---KKKRIQIVPLSRQALEILDAMRRI----AQIRWKGQPFEDKPIFPSTRN 297 Query: 304 ------------CENAVLLVIKQI---GYEGLESGHGFRHEFSTIMNEHEWPADAIEVQL 348 E A+ ++ + L HGFRH ST+++EH W +AIE QL Sbjct: 298 TPSGSPYMGISAMEVALKWLVAHVPAPDTPPLIDLHGFRHMASTLLHEHHWDHEAIERQL 357 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 +H Y+ ++ L RR MMQWWAD+LD Sbjct: 358 SHLKRDKTEATYDKSKLLPLRRRMMQWWADYLD 390 >UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N3S0_9GAMM Length = 397 Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/392 (30%), Positives = 192/392 (48%), Gaps = 11/392 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGK---KVWQLRYKIDGKEKILTVGKYPL 57 ML+ I + K +K R D +GL L + S K K++ R++ D K + +T+G Y Sbjct: 1 MLSDSLIRSLKLGDKK-RHTDRDGLVLELRPSKKQLKKIFIFRFQWDKKPQTITIGDYRS 59 Query: 58 MTLQEARDKAWTARKDISVGIDP-VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 + L ARD A R ++ GIDP K +A +F + +W++ K W Sbjct: 60 VGLGAARDIALAYRNMVNSGIDPRSKNVEADQEKITFEVVADQWFQKYKGTWKDFARNRH 119 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 +K DI+P+IG I DI LL +I+ ED G + A++ R +F +A+ + Sbjct: 120 SKSLSRDIIPLIGDKPIDDITKADLLFIIKPHEDLGHHDVAHRLYARLQSIFEFAVGSSL 179 Query: 177 AKYNPAPDLADAM-KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + P L A+ R N P + ++ + + + + + + ++L + R Sbjct: 180 TENFPFIGLKKALIPKPRVINQPAISSNNAHEMMRVIKQTNSTKIVKVYMELLAHLFTRP 239 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + I A MK H VP++ V+ LL L IT + ++F+ Sbjct: 240 TELREAKWSEFDLQKSEWNIPAERMKMGIPHWVPLTPHVLNLLKELRLITG-FTPYLFSS 298 Query: 296 RNDKK-KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANG 353 KK KPI E +V ++ G++ + HGFR S++++E + +DAIE QLAH Sbjct: 299 PALKKAKPISEASVRKLLHNAGFKNRHTAHGFRSLASSVLHEQGNFRSDAIEAQLAHKVQ 358 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADW-LDEKV 384 G VRG+Y A + +RRE+M W++ W LDE + Sbjct: 359 G-VRGVYLRADFKAERRELMHWYSSWLLDEHI 389 >UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCI3_9SPHN Length = 325 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 100/334 (29%), Positives = 173/334 (51%), Gaps = 30/334 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ I+AAK ++KPY+L D +GLYL V +G + W++ Y+ GK+K LT G++P + L Sbjct: 3 LSAVAIKAAKSRDKPYKLADRDGLYLEVSPTGARSWRMNYRYLGKQKTLTFGRWPAVGLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEH-----------K 104 +AR K AR+ ++ G DP + K + ++ +SF A+ +E+ K Sbjct: 63 DARKKCDAAREVLARGDDPGEQAKLERIAASVASASSFEAVAEEYLAKIEKEGRSSVTMK 122 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 K+ W +G+ I IG I I +LL +R+ E +G E A + R C Sbjct: 123 KKRWLIGF-----------IDKSIGKRPISAISAPELLLTLRKMEKKGKYETARRLRSTC 171 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLI 223 ++FRYAI TGRA+ + DL A+ + + P + A ++ +++ +F G + I Sbjct: 172 SQIFRYAIATGRAERDVTVDLRGALIVPKAVHRPAITDASKVGGLLRSIESFDGHPTTQI 231 Query: 224 ATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSS 283 A K++ + +R ELR W D + + TI A K R+ H +P+S Q +E++ ++ Sbjct: 232 ALKLVPHVFVRPGELRHAEWTEFDLDANVWTIPAEKTKMRRPHAIPLSRQTLEIIASIEH 291 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY 317 S F+F ++P+ EN + ++++GY Sbjct: 292 DAD-YSRFLFPSLRSVQRPMSENTINAALRRMGY 324 >UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromonadales RepID=A1SRI6_PSYIN Length = 416 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 104/392 (26%), Positives = 183/392 (46%), Gaps = 15/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L+ QI K +K L DG GL L + +G K+WQLR+ I+ K ++ G YP ++ Sbjct: 7 LSDTQIRLTKASDKVITLSDGGGLQLRIKPNGSKLWQLRFNKPIEKKPALMGFGAYPAIS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSN-------NNSFSAIYKEWYEHKKQVWSVGY 112 L AR A + ++ GI+P KA++ S NN+F + W + K Sbjct: 67 LANARKLREAANELLAQGINP-KAQRDSEIKEKELILNNTFEMVTAAWIKLKASEVKPDS 125 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + ILP IG I +I +E +R E +G E +A + ++ RYA Sbjct: 126 LKTISTTLTNHILPRIGKCPITEITAPMAIEALRPIEAKGNHEVIARACQYLNQIMRYAT 185 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL--RY 230 G NP + + N P + +++P A+AT +I + +L + Sbjct: 186 NLGMIHSNPLTGIKGVFMTKKITNNPHVKPEELPQLLMAIAT--ANIKKITRNLILWQLH 243 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T R E W +D+EN + I +K H +P++ Q + +L I+ S+ Sbjct: 244 TMTRPAETALAQWNEIDYENNLWIIPGERIKTGMTHQIPLTVQTLAILEACKVISGN-SD 302 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 ++F + + + + K++GY+G ++ HG R T +++ + E L+H Sbjct: 303 YIFPADRNPNAHANKASANMAFKRMGYQGRQTAHGLRGLARTTLSDKGVAYEPSEACLSH 362 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 G SV YNH+ YL++R ++M WW+++++E Sbjct: 363 KVGNSVSQSYNHSTYLNQRIKIMAWWSNYIEE 394 >UniRef50_C8PFJ4 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PFJ4_9PROT Length = 383 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 110/388 (28%), Positives = 192/388 (49%), Gaps = 22/388 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q++ KPK+KPY + DG+ L + + SG K + YK K K +T+G+ M+L Sbjct: 8 LTATQLKNLKPKDKPYFVGDGSNLLIKIMPSGAKFFIYEYKQGAKYKRVTIGRAGEMSLA 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 EAR + +K + +S+ +F +++EW + K ++ S + + F+ Sbjct: 68 EARQRK-----------SELKTRVKTSDKITFREVFEEWIKTKSKI-SPKQLFWINRRFE 115 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 +LP +G ++I DI ++ + E A K +++A++ +N Sbjct: 116 SLLLPALGSMQIADIGRKDIIGALSPLLSDEKQETAKKVLGALNGFYKFALLHEYVDHNI 175 Query: 182 APDLADA-MKGYRK-KNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 D+ A + G R+ ++F + + +I KA+ + G+ + + YTA+R + Sbjct: 176 IADIDKATLIGRRQIRHFAYFKDEAEIRNLIKAVKGYFGNERIKVCALFMLYTAVRGENA 235 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W + + + I AS MK K H V +S V +L+ + + SEF+F Sbjct: 236 RFATWDEI--KGDMWKIPASKMKNGKDHEVFLSSSVRRMLSDYRASSPLQSEFIFPSIKS 293 Query: 299 KKKPICENAVLLVIKQIGYEG-LESGHGFRHEFSTIM----NEHEWPADAIEVQLAHANG 353 +PI +N V +++ +G+ + + HGFR FSTI +EH +D IE+ LAH Sbjct: 294 NVRPISDNTVRSMLRNLGFSNEMITPHGFRATFSTICHEKQDEHGQNSDVIELCLAHVEK 353 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 V+ YNHA+ L +R +MQWW+D+LD Sbjct: 354 NKVKDAYNHAKNLKQRAALMQWWSDFLD 381 >UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3_FRATN Length = 413 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 117/406 (28%), Positives = 193/406 (47%), Gaps = 36/406 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++++ K K YRL DGNGLY+ V +G K WQ RY K K L +G YP ++L+ Sbjct: 5 LTASKLQSLKATGKDYRLNDGNGLYIKVSKAGSKSWQFRY----KGKWLGIGSYPAISLK 60 Query: 62 EARDKAWTARKDISVGIDPV--KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA-- 117 +ARD+A+ + ++ G DP K K +NN FS + + +E K G+ +E Sbjct: 61 QARDEAFKYNQMLAGGKDPKLEKEKGKYQDNNLFSIVSAKAFETKDPSKPYGWKSEEVYN 120 Query: 118 ---KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 +++ ILP + I DIEP QL ++ + K + +F YA+ Sbjct: 121 RNLSIYNRFILPSLKTFNINDIEPYQLAGIL----ETTTPSNQRKIKNLLNMIFTYAVGK 176 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALA---TFSGSIVSLIATKVLRY 230 G KYN A D+ + K F F+ P + F++ L + G + +A K+ Sbjct: 177 GILKYNIARDIQAEKED--PKGFEFINPVEDKYNFSQLLNDIYNYKGQYNTKMALKLAVL 234 Query: 231 TALRTKELRSMLWKNVDFEN------RIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 R + SM W+++ N + I A MK + P+S Q +LL + Sbjct: 235 VGFRPNNIVSMKWEDIQEANIDGKKIPFVFISADNMKMSRDFRQPLSKQAYKLLMEIKEY 294 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL----ESGHGFRHE----FSTIMNE 336 E+VF + KK E+ + +GY G + HGFR S+I ++ Sbjct: 295 NGGF-EYVFHSLSKKKHITIESLSKALRDTLGYNGTDKPKQHTHGFRKSVRTYISSIRSK 353 Query: 337 HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + W +D+I + L+H+ ++ IY+ +L +R +M+Q WAD++D+ Sbjct: 354 YNWCSDSIRMILSHSKENAIDNIYDKNDFLLERSQMLQLWADYVDD 399 >UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F7C9 Length = 374 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 114/394 (28%), Positives = 193/394 (48%), Gaps = 37/394 (9%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMT 59 MLT +I K K R LD +GLYL V SG K W+ RYK G + +G YP ++ Sbjct: 1 MLTNTKIHRLKTPTKLERHLDSDGLYLEVTKSGSKNWRYRYKNHTGSWTMKALGSYPKIS 60 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE---- 115 L++AR D+ V A SF EW +K GY + Sbjct: 61 LEKAR----ALLDDLEV--------VAEYKCISFKETASEWLVYK------GYTSYKNKH 102 Query: 116 -LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + + ++ +LP +G + I +I+P +L ++++ E +G +E A + + ++F+Y + Sbjct: 103 LVHRRIENYLLPKLGNMTIANIKPKDILPILKQIEAKGHLELARRVQNILSQIFKYGVQN 162 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA-- 232 + NPA L K ++ P + F + LAT + + + K+ A Sbjct: 163 LYCETNPAQPLQGCTKQPSVRHMPAIVEQS--EFARLLATIDSASNLMPSVKLCLQLAPH 220 Query: 233 --LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 LR++ +R +++DF+ ++ I M GR+ H +P+++ V+E+L T +I + E Sbjct: 221 VFLRSQSIRMAKPEHIDFDRKLWVIPKDKM-GRE-HWIPLTEPVIEMLQT--AIAQTNGE 276 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEH-EWPADAIEVQL 348 ++F G P+ EN + ++ +G + HGFR FST+ EH P D IE+QL Sbjct: 277 YLFNGIKPNS-PLSENTLNHALRSLGVDKQTHVFHGFRSSFSTLAREHCRLPGDLIELQL 335 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 H G V+ Y+ +Q L++RRE+M W+ +L E Sbjct: 336 GHIEGNQVKAAYDRSQRLEERRELMDKWSKYLAE 369 >UniRef50_B6WTC3 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WTC3_9DELT Length = 269 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 140/256 (54%), Gaps = 7/256 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I+A KP EK R D GLYL V +G K W+ +Y+++ KEK++ +G +P ++L+ Sbjct: 4 LTELKIKAIKPSEKMARYYDSGGLYLQVSPTGGKYWRFKYRVEKKEKLVALGTWPQVSLK 63 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN----NNSFSAIYKEWYEHKKQVWSVGYATELA 117 EAR+K R++I+ G DP+ KKA + +F + + W + + VWS +A + Sbjct: 64 EAREKRDQCRQEIAAGNDPMLLKKARAEAACPGRTFQEVAEAWRNNMENVWSESHAKTIR 123 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + ++ P++G +I I P ++L ++R+ E RGA E A + CG++FRY + G Sbjct: 124 ERLALNVYPVLGKKDIAGIRPTEILAMLRKIEARGAYETAQRVLGICGQIFRYGVAVGLL 183 Query: 178 KYNPAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + +P+ DL A+ ++ K + PA+ + A + + G +V A + T R Sbjct: 184 ESDPSRDLRGALVPHQGKQLAAITDPAE-VGALLLCMDQYKGGVVVRAALQFSALTFCRP 242 Query: 236 KELRSMLWKNVDFENR 251 E+R W VDFE R Sbjct: 243 GEIRHAEWGEVDFEAR 258 >UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria RepID=B2I529_XYLF2 Length = 410 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/392 (28%), Positives = 195/392 (49%), Gaps = 12/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++A KP+++ Y + D GL + V +G VW+ RY++ G+ + LT+GKYP ++L+ Sbjct: 3 LTDTALKALKPRDRIYSVADERGLSVEVYPTGGIVWRFRYRLAGRYEKLTLGKYPALSLR 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYE---HKKQVWSVGYATELAK 118 AR K A +++G P + K+ + + + +++ E + Q +T + Sbjct: 63 NARLKRDEAASLVAMGTSPARQKQLAKVTAADAMTVRDFAERFFREIQSRDRKDSTMPRR 122 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D DILP +G ++++ ++ +I R +++G A + R + YA+ G Sbjct: 123 YLDKDILPFVGDKPMREVTAEEIRSLIWRKKEQGFDATAGQIRGVLKRLCDYAVTCGLMP 182 Query: 179 YNPAPDLADAMKGYRK--KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NP LA M+ K L D+I F +A+ +A ++ T +R Sbjct: 183 TNPV--LALPMRHVYKAVSRDRALSPDEIRLFLRAVWASRIRRQFKLALHLILLTMVRKS 240 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 EL W +V + I A K K H+V +S Q V L L + S V G Sbjct: 241 ELLLARWDHVHLDQAQWHIPAEHSKTGKPHIVYLSRQAVVLFEALRVLAGG-SALVMPGS 299 Query: 297 NDKKKPICENAVLLVI-KQIGYEGLESG--HGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 +P NA+ + K + ++G+ + H R ST ++EH W +D +E L H+ G Sbjct: 300 GTLTRPFAHNALNHALGKAMQWQGIHAFTIHDLRRTASTWLHEHGWASDVVEKALNHSIG 359 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 G VRG+YN A+Y D+RR+M+Q WAD+++++++ Sbjct: 360 G-VRGVYNRAEYADQRRQMLQCWADFIEKQLK 390 >UniRef50_UPI00016954D2 DNA integration/recombination/inversion protein n=1 Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=UPI00016954D2 Length = 252 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 9/245 (3%) Query: 7 IEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDK 66 I A+P KP RL DG GLYL + SG K+W+ +Y+ GKEK L +G YP ++L EAR + Sbjct: 8 IRKAQPASKPVRLFDGGGLYLEIAPSGGKLWRWKYRFAGKEKRLALGPYPEISLAEARKR 67 Query: 67 AWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 +R+ + GIDP + +K + ++SF AI E + + + ++ Sbjct: 68 HAESRQVLKSGIDPGEQRKVQKLTRLAHADSSFGAITLELLTMRAKKNAKSTVVRNTRIV 127 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + D+ P IG I +I +LL V+R+ E RGA+E A++AR VFRY+I TGRAK+N Sbjct: 128 EKDLNPYIGERPITEISAPELLAVLRKMEKRGAVETAHRARGIASMVFRYSIATGRAKHN 187 Query: 181 PAPDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA DL A++ + ++F L PA Q+ +A+ + GS + A K+ R EL Sbjct: 188 PAQDLLGALEPTQTEHFASLTEPA-QVARLLRAIWGYEGSTIVRAALKLASLLFARPGEL 246 Query: 239 RSMLW 243 R+ W Sbjct: 247 RAARW 251 >UniRef50_C6UP78 Integrase n=13 Tax=Escherichia coli O157:H7 RepID=C6UP78_ECO5T Length = 301 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/259 (30%), Positives = 140/259 (54%), Gaps = 6/259 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ +AKP+EK Y L+DG+G+ L V G K W+ R++ GK+ ++ G YP ++L Sbjct: 29 LTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVSLA 88 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN-----SFSAIYKEWYEHKKQVWSVGYATEL 116 +AR K ARK ++ GIDP + K+A +F + +EW Q WS +A + Sbjct: 89 DARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLV-TNQKWSEDHANRV 147 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 K +D+I P IG I ++ LL I+ E G +E A++ ++R + RYA+ +G Sbjct: 148 KKSLEDNIFPTIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSGL 207 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 Y+PA +++ A+ +++ P L +IP + +++G ++ T++ +R+ Sbjct: 208 IDYDPAQEMSGAVASSNRQHRPALELKRIPELLDKIDSYTGRPLTHCTTELTLLIFIRSS 267 Query: 237 ELRSMLWKNVDFENRIITI 255 +L W +DFE + TI Sbjct: 268 KLHFARWSEIDFETSMWTI 286 >UniRef50_UPI00016B13C2 phage integrase family protein n=1 Tax=Burkholderia pseudomallei BCC215 RepID=UPI00016B13C2 Length = 324 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 6/182 (3%) Query: 10 AKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWT 69 AK PY+L DGNG++L V +G K W+L Y+ GK+K L +G YP +TL AR K Sbjct: 4 AKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVTLATARKKRDE 63 Query: 70 ARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATELAKMFDDD 123 AR+ I+ GIDP +AKK + NSF A+ +EW++ ++ WS GYA ++ + D Sbjct: 64 AREQIAAGIDPGEAKKEARRAAEIAAANSFEAVAREWFDSQRPGWSDGYAAKVLNSLEVD 123 Query: 124 ILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAP 183 + P IG I +I+ Q+L ++R E RG E A + +R VF+Y I+TGR NPA Sbjct: 124 VFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIMTGRCSRNPAA 183 Query: 184 DL 185 D+ Sbjct: 184 DI 185 >UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter RepID=A7ZG37_CAMC1 Length = 406 Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 176/350 (50%), Gaps = 16/350 (4%) Query: 48 KILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQV 107 K + +GKYP +TL EAR KA + G D ++ A +F + EW + ++ Sbjct: 60 KQIKIGKYPSITLAEARAKALELERLRDRGED-LQTATAKQKTITFKDVADEWIDKEQSK 118 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGA-----MERANKARR 162 + + ++ ++ + +++P +G I +++ I + + R A E + + R Sbjct: 119 ELIAFNKQIGRI-EKNLIPYLGDKAITELKRRDYAHAIEQIQAREAKRGITHETSLRTFR 177 Query: 163 RCGEVFRYAIVTGRAKYNPAPDLA--DAMKGYRKKNFPFLPA-DQIPAFNKALATFSGSI 219 ++ A+ G ++NP D+ DA K +F + ++ A+ + GS Sbjct: 178 LLRKILDLAVNKGYIEHNPTRDIIFNDAFKTSTNNHFKAITEPKKLKELLGAMQDYQGSF 237 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 + A +T LR+ +R + W+ VDFEN +IT A MK R++ +PMS QV +LL Sbjct: 238 YTQQALIFGVHTFLRSANVRGLKWQYVDFENNLITFPAEAMKLREVFYMPMSKQVKKLLK 297 Query: 280 TLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE--- 336 T+ + +FVF +P+ ++ + IK++G+ HG R ST++NE Sbjct: 298 TM--LEHKRGDFVFPSGISATRPLSDSTLNQAIKRLGFGDEMVFHGLRTTASTLLNENIK 355 Query: 337 -HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 H + +D IE+ L H SV+ IY+ +Q LD+R ++MQWW+D+LD V+ Sbjct: 356 NHGFSSDVIELCLDHKERSSVKAIYDRSQRLDERAKLMQWWSDYLDSLVK 405 >UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobacteria RepID=A9VZC1_METEP Length = 412 Score = 147 bits (370), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 117/389 (30%), Positives = 186/389 (47%), Gaps = 16/389 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q+ A K P R DGNGLYL V SG K W LR + G+ + + +G L+TL Sbjct: 22 LTTVQVRALK---VPGRYADGNGLYLVVEPSGSKRWLLRTIVQGRRRDIGLGGAGLVTLA 78 Query: 62 EARDKAWTARKDISVGIDPV-KAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKM 119 EAR+KA RK G DP+ + +KA + +F+ ++ +E K W + +A + Sbjct: 79 EAREKALAYRKLARDGGDPLAERRKARATVPTFAEAAEQVHEEHKASWKNPKHAAQWITT 138 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRR-FEDRGAMERANKARRRCGEVFRYAIVTG-RA 177 P +G + IE +L + + +G E A + R+R G V +A G R Sbjct: 139 LRTYANPHLGARRVDQIETPDVLRALSPIWLTKG--ETARRVRQRIGTVLDWAKAAGHRT 196 Query: 178 KYNPAPDLADAM--KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NP +A + +G R ++ LP ++PAF L + + +A + L TA RT Sbjct: 197 GDNPVESVAKGLPKQGERDEHHAALPYAEVPAFVTRLQSSDHGEAARLAFEFLILTAART 256 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 E+ W+ +D + T+ A+ MK + H VP+S + +E++ + + S F+F G Sbjct: 257 SEVLRAEWREIDEAEALWTVPAARMKAGREHRVPLSKRSLEIVRR-AKLLAGDSAFIFPG 315 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGG 354 R+ KP+ L+ ++++ + HGFR F E P + E+ LAH Sbjct: 316 RST-GKPMSNMVFLMALRRMKL--TVTAHGFRSSFRDWAAEATSLPREVAEMALAHTIEN 372 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEK 383 V Y L KRREMM+ W+ ++ K Sbjct: 373 RVEAAYRRGDLLAKRREMMEQWSTFVASK 401 >UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family n=4 Tax=Rhodobacterales RepID=Q5LS43_SILPO Length = 406 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 177/374 (47%), Gaps = 9/374 (2%) Query: 15 KPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 KP + DG+GL+L V +G K W R I GK + +G L++L EA + A RK Sbjct: 31 KPGKYTDGHGLFLKVDDTGAKRWVQRIVIRGKRTEIGMGSASLVSLAEASETALQNRKLA 90 Query: 75 SVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGGLEI 133 G DP++AK+ + +F ++ ++ + W + +A + + P IG L++ Sbjct: 91 RAGGDPLQAKRTAQALLTFEEAARKVHKIHEPTWRNKKHAAQFISTLETYTFPRIGKLKV 150 Query: 134 QDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGY- 192 ++ +L V++ E A + R+R G V ++AI G NPA ++ A+ Sbjct: 151 SEVATADVLAVLQPIWLEKP-ETARRVRQRIGTVMKWAIANGWRTDNPAEAISQALPKQI 209 Query: 193 -RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENR 251 +++ LP D++P F + L + +A +++ TA R+ E+R W D E Sbjct: 210 DTQQHRKALPYDKVPEFLETLKASDAGDFTKLALELVVLTASRSSEVRKAEWSEFDLEQG 269 Query: 252 IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLV 311 I T A MK +K H VP+S + +E+L + VF G KP+ + +L + Sbjct: 270 IWTRPAERMKSKKEHRVPLSPRALEILIEARELCTGEG-LVFPG-TKIGKPLSDMTLLKL 327 Query: 312 IKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRR 370 K +GY+ HGFR F T E P D E LAH Y + + +KRR Sbjct: 328 TKALGYD--VDVHGFRTSFKTWAQERTNTPRDVSEAALAHVLKDKAEAAYARSDFFEKRR 385 Query: 371 EMMQWWADWLDEKV 384 ++M+ WA ++ + Sbjct: 386 KLMERWASYISSNL 399 >UniRef50_A7H3V7 Putative site-specific recombinase, phage integrase family n=2 Tax=Campylobacter jejuni RepID=A7H3V7_CAMJD Length = 399 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 117/405 (28%), Positives = 189/405 (46%), Gaps = 36/405 (8%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLM 58 ML +I+A K K+K Y + D + L L + SGKK + YK + K +T+G+YP + Sbjct: 1 MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTL 60 Query: 59 TLQEARDKAWTARKDISVGI---DPVKAKKASSNNNSFSAIYKEWYEHKKQVWS------ 109 L AR + R ++ V + D ++ K + F + E E KK S Sbjct: 61 NLANARKQ----RDNLKVNLAENDSIREKSEIT----FKELALEKMELKKLELSEKTYKS 112 Query: 110 -VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 V Y A +I I+ L+I+DI L+ +F E A+K E+F Sbjct: 113 YVSYLQRFAFGIYGEI--ILDKLQIKDI-----LKSFEKFRKENIREGADKFFTLLNEIF 165 Query: 169 RYAIVTGRAKYNPAPDLADA---MKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIAT 225 R+ ++ K NP +L + K + L +I A + + G I IA Sbjct: 166 RHGVIKEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAA 225 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 TA R+ +RS W+++D EN I I MK ++ H +P++ Q V +L ++ Sbjct: 226 MFSLLTAQRSFSIRSAKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMS 285 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIM----NEHEWP 340 ++F K + I +N + + +++GY + + HGFR FST+ N+H+ Sbjct: 286 INTG-YLFYSLRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLAHENRNKHQMS 344 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +D IE+ LAH ++ YNHA L ++ +MQWW D+LDE E Sbjct: 345 SDIIELCLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIAE 389 >UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8S0_ACIBT Length = 433 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 122/406 (30%), Positives = 196/406 (48%), Gaps = 32/406 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEK--ILTVGKYPLMT 59 LT + + KPK+K Y DG GLYL V +G K W RY G +K +T+G YP ++ Sbjct: 8 LTDTKCASLKPKDKEYVEADGGGLYLRVRPTGAKSWIFRYTNRGNDKREKITLGPYPALS 67 Query: 60 LQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEW---YEHKKQVWSV 110 L +AR+K + I+ G+DP + AKK +N N+ + + W Y +K + Sbjct: 68 LAKAREKKHEFLRMIAEGVDPKEQLSILLAKK--NNVNTLENVVRVWLDAYAVRKPLSED 125 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 +L K F++ + P I+ I L + + D + A + R +V+ Y Sbjct: 126 TKNKQLRK-FENHLFPKFKDKAIEQITLRDLKDALNVIYDHSP-DNAQRIRASLIQVYSY 183 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKN-FPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 A+ + N A DL D RK + F D IP + + SG+ ++ + + Sbjct: 184 AVQHSYIQTNIARDLEDMDLSARKNHRATFRSLDLIPQLIRRIKADSGNPLTKLCLLLGL 243 Query: 230 YTALRTKELRSMLWKNVDFE---------NRIITIDASVMKGRKI---HVVPMSDQVVEL 277 +T LR+ E+R W +DFE R+I +G K+ H+VP+S Q +E+ Sbjct: 244 HTFLRSSEIRFARWNEIDFEAEIWRIPPRRRLIEGVKHSDRGAKMKEEHLVPLSKQSIEI 303 Query: 278 LTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNE 336 L + + +FVF N+K+ I EN ++++GY E S HGFR + + E Sbjct: 304 LEKVYQYSGDC-DFVFPSLNNKRIFISENTPNDALRRMGYTKEEISFHGFRALARSALGE 362 Query: 337 HE-WPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWL 380 + DA+E Q++H G Y H A+YL++R ++MQ W+DWL Sbjct: 363 MSIFSRDALEKQMSHQERNETVGAYTHIAEYLEEREKIMQIWSDWL 408 >UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family n=1 Tax=Citreicella sp. SE45 RepID=D0D2S4_9RHOB Length = 479 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 189/380 (49%), Gaps = 12/380 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++++AA P + DG+GLYL V +G + W R I GK + + +G L+TL Sbjct: 104 LTAQRVKAAT---DPGKYFDGHGLYLLVKPNGSRSWVQRIVIRGKRREMGLGSASLVTLA 160 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMF 120 EAR+ A RK G DP++A++ + +F ++ YE + W + +A++ Sbjct: 161 EAREAALANRKVARAGGDPIQARQEALAVLTFEEAARKVYEMHRPTWRNPKHASQFINTL 220 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG +++ D+ +L V+ E A + R+R G V ++A+ G + N Sbjct: 221 ETYAFPKIGAVKVGDVNTNDVLRVLTPIWTTKP-ETARRVRQRIGMVMKWAVAKGWRQDN 279 Query: 181 PAPDLADAMKGY--RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA ++ A+ + RK + +P ++P F + ++ +A + L TA R+ E+ Sbjct: 280 PAEAISQALPKHDRRKAHRKAMPYAEVPGFIATVKASKAGALTKLAMEFLILTAARSGEV 339 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W +D E I T+ A MK ++ H VP+S + +E+L+ +I+ S+ VF G + Sbjct: 340 RGASWSEIDSEAAIWTVPADRMKAKREHRVPLSPRALEILSEARAISD-GSDLVFPG-SR 397 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVR 357 + +P+ + + + +++G+ HGFR F E + P + E LAH Sbjct: 398 RGRPLSDMTLSKLTRELGFA--VDVHGFRTSFRMWAQEQTDAPREVAEAALAHTIRNQAE 455 Query: 358 GIYNHAQYLDKRREMMQWWA 377 Y + ++RR +M+ W+ Sbjct: 456 AAYARSDLFERRRSLMERWS 475 >UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=Q8DF52_VIBVU Length = 452 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 110/418 (26%), Positives = 189/418 (45%), Gaps = 57/418 (13%) Query: 21 DGNGLYLYVPVS----GKKVWQLRYK--IDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 DG+ LYL + + KK WQ Y + K LT+G YP +TL++AR KA + + Sbjct: 27 DGDNLYLRLRLGKNKKTKKSWQFNYHHPLTKKRIKLTIGNYPALTLKDARKKAENYLELL 86 Query: 75 SVGIDPVKAKKASSNN------NSFSAIYKEWYEHK--------KQ-------------- 106 IDP + ++ N F + ++W+E K +Q Sbjct: 87 EKNIDPQEYERTGGINAIDPDKRLFKDVAEKWFEEKILAEDKKKRQEKIDDANKRAKDEG 146 Query: 107 ------------VWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAM 154 + + Y+ ++ D+ ILP +G + I +E E ++ +G Sbjct: 147 REKASEQELEAVLRDIRYSKDIRGRLDNHILPALGNIPITKMETYLAQEALQPSYAKGI- 205 Query: 155 ERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALAT 214 +K + V YA G K NP DL++ RK+ P + + + KA+ Sbjct: 206 -NMDKICQISSRVMGYAKKLGYMKSNPLSDLSEVFVNKRKQKQPSIKPEGLSELMKAMGE 264 Query: 215 FSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQV 274 + + V+ ++ +T R E+ M W VDFEN +I I + MK H +P++ Sbjct: 265 RNITKVTRAGFEMQMHTLARASEIAKMRWDEVDFENNLIKIPSYRMKRLNEHFIPLTKYT 324 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKP-ICENAVLLVIKQIGYEGLESGHGFRHEFSTI 333 LL L + + E+VF +P + + ++ +K+ G++G HGFRH ST Sbjct: 325 RGLLEYLKPFSSHL-EYVFPADPRSSRPHMNQQSINANLKRAGFKGELVSHGFRHMGSTF 383 Query: 334 MNE-------HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +N+ ++ AD IE LAH + +R IYN A+Y++ RRE++++W D++ E+ Sbjct: 384 LNDSKKYGANEKFDADVIEACLAHCDNDKIREIYNSAEYIEMRREILEFWGDYIVEQT 441 >UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3P2_BURTA Length = 409 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 125/402 (31%), Positives = 187/402 (46%), Gaps = 34/402 (8%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTLQEAR 64 Q +AKP+E+ YRL DG GL L V +G K WQ RY K DG+E ++ +G YP +TL+ AR Sbjct: 10 QCRSAKPRERVYRLSDGGGLALLVKPNGLKYWQFRYMKPDGREGLIQIGPYPRITLEAAR 69 Query: 65 DKAWTARKDISVGIDPVKAKKA--------SSNNNSFSAIYKEWYEHKKQVW-SVGYATE 115 R + G DP +K ++ +F + E + W + + + Sbjct: 70 AARNEHRVAVQGGDDPATLRKQEKARRKIDAARALNFKQCATAFIEARSAEWVNPKHTQQ 129 Query: 116 LAKMFDDDILPIIGGLEIQDIEP---MQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 PIIG L DI+ ++LE I ++ E A++ R R V +A Sbjct: 130 WTNTLSTYAYPIIGALRPADIDTDLVRKVLEPIWLTKN----ETASRVRGRIESVLDWAK 185 Query: 173 VTG-RAKYNPA-------PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 V G R NPA LA K + K+ LP +I AF L G+ + Sbjct: 186 VRGLRDGENPARWSGHLDQLLAAPGKVQKPKHHAALPFTEIGAFVAELRGMVGTAARALE 245 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTL-SS 283 +L TA+RT E+ D + ++ T+ A MK ++ H VP+S +ELL TL +S Sbjct: 246 FTIL--TAMRTGEVIGARHDEFDADAQLWTVPAERMKAKRAHRVPLSSSALELLKTLPTS 303 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPAD 342 PV VF G ++P+ A+L V++++ G + HGFR F E + + Sbjct: 304 ADSPV---VFEGMR-ARRPLSNMAMLQVLERM-KRGALTVHGFRSTFRDWAAECTPFSNE 358 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +E+ LAHA Y DKRR +MQ WAD ++ +V Sbjct: 359 VVEMALAHAIRDKTEAAYRRGDLFDKRRTLMQAWADHIENEV 400 >UniRef50_B5J5X2 Site-specific recombinase, phage integrase family protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J5X2_9RHOB Length = 383 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 107/372 (28%), Positives = 175/372 (47%), Gaps = 15/372 (4%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP---- 80 ++L V SG+KV++L Y++ G ++ +G YP +L +AR KA R D++ DP Sbjct: 1 MFLEVLPSGRKVFRLAYRLAGNQRTKLIGDYPATSLADARLKASAFRLDLNSS-DPEIVE 59 Query: 81 --VKAKKASSNNNSFSAIYKE---WYEHKKQVWSVGYATELAKMFDDDI-LPIIGGLEIQ 134 + ++ + + +KE Y +Q + T + + + +G + Sbjct: 60 VATRPRQTVTTKKRQTTTWKEVADGYLMMRQQSNPAPKTLRKLNYQIGVTVDALGNPRVD 119 Query: 135 DIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRK 194 +I +L+V+ G +E A++ R R ++FRYA G ++PA DAM R+ Sbjct: 120 EITAQDILDVVNPIASSGRVETAHEIRARFSQIFRYAGARGLVTHDPAAFTIDAMIKRRR 179 Query: 195 KNFPFL--PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRI 252 F + PA + + + + A + Y R ELR M W +D+++ Sbjct: 180 GEFAGITDPAAVGKLLHAIESYREANPIVGAALMLSAYLFPRNTELRGMRWDEIDWDSLR 239 Query: 253 ITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVI 312 + MK + H+VP+ Q ++LL L SE V D K+ + + + Sbjct: 240 WEVPGQRMKMNRDHIVPLPSQAIDLLRFLQKYDFG-SELVLPSPRDPKRMVSDMTFNAAL 298 Query: 313 KQIGYEG-LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRRE 371 +++G++ HGFR ST +NE W D IE QLAH VR YN AQYLD R E Sbjct: 299 RRMGFKSDRHVHHGFRTTASTNLNEMGWNYDWIERQLAHVPANKVRSSYNKAQYLDGRTE 358 Query: 372 MMQWWADWLDEK 383 MM+ +ADWLD + Sbjct: 359 MMRAYADWLDAR 370 >UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SVD2_ACILW Length = 388 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 107/367 (29%), Positives = 174/367 (47%), Gaps = 12/367 (3%) Query: 17 YRLLDGNGLYLYVPVSGKKVWQLRYKI-DGKEKILTVGKYPLMTLQEARDKAWTARKDIS 75 YRL D LY +V +G K WQ RYK +GK VG YP++ +EAR A K+I Sbjct: 27 YRLWDSPNLYFFVKANGSKSWQFRYKKRNGKWGWKGVGAYPIIKAKEARVIASGYLKEIE 86 Query: 76 VGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQD 135 G + S++ + + K++ WS +++ I P G +++ Sbjct: 87 AGTF------LEVDKYKLSSLIESLLDKKQKKWSPKNFSKMQLSIKKHIYPEFGNRDLRT 140 Query: 136 IEPMQLLEVIRRFE-DRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRK 194 I+ M+ E R E D + K E + +A + K NP ++ + ++ Sbjct: 141 IKTMEWYEFFARLEYDLKIPVQMRKLLSFAREAYDWACIYCEYKENPVREVQGFFERHKS 200 Query: 195 KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIIT 254 NF F+ ++P A+ ++S S + I ++L R EL+ W+ DF +I Sbjct: 201 GNFKFVDLIELPDLLSAIRSYS-SRSTAIGLELLLLLFPRPGELQQAKWEQFDFHRKIWI 259 Query: 255 IDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQ 314 A +MK +K H VP+ DQ + LL L I P S ++F RND + + + Sbjct: 260 KPAEMMKNKKEHRVPLPDQAIILLKRLKEIQTP-SPYLFPLRNDPMMAMSVDTFNEALIS 318 Query: 315 IGYEGLESGHGFRHEFSTIM-NEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMM 373 +GYE + HGFRH ST + N+ IE L+H G+ +GIY+ A++ +R ++M Sbjct: 319 LGYENKQHPHGFRHLASTTLNNKFSDKYQIIESALSHVKQGT-KGIYDKAEHFQERVDLM 377 Query: 374 QWWADWL 380 Q WAD++ Sbjct: 378 QGWADYV 384 >UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V760_9PROT Length = 384 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 113/407 (27%), Positives = 182/407 (44%), Gaps = 53/407 (13%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 +LT I+ AKP+EKPY + D GL++++ V G K ++ + K+DGK KI+ +G + M Sbjct: 3 ILTTVAIKNAKPEEKPYLIYDSKERGLHVHISVVGTKTFRFKTKLDGKAKIIKLGDFKHM 62 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW--SVGYATEL 116 TL++AR +A+ I GIDP + +F+ + KE+ K+ + + G + Sbjct: 63 TLEQARQRAFDLNVQIQNGIDPT--VQIVPEFKTFAEVSKEFVAWKRDEFGRAEGTIRKY 120 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D+D+LP I++I + + VI + R + A K V +AI G Sbjct: 121 QECLDNDLLPAFANTSIKEIHTKESVAVIEKINAR-SNSLAIKNIEMLNMVVMFAIQRGY 179 Query: 177 AKYNPAPDLADAM--KGYRKKNFP------FLPADQIPAFNKALATFSGSIVSLIATKVL 228 +L+ + K + K P F DQ P F + A + Sbjct: 180 RDSYTQLNLSGLIKEKPVKPKIMPSSLKDTFDKIDQYPTF-----------IMRCAITIQ 228 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 + LR E+ W+ +DFE + + A MK ++ H+VP++ Q +ELLT L S T Sbjct: 229 FHVFLRGSEIMGGRWEEIDFEKKQWVVPADRMKMKRTHIVPLTSQTIELLTKLKSATGD- 287 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESG----------HGFRHEFSTIMNEHE 338 S F+F ++ IG + L HG R T M ++ Sbjct: 288 SAFLFPSSKS-------------VEHIGRDALSKAFRAADLKIVPHGCRTLAGTWMRNNK 334 Query: 339 WPADAIEVQLAHANGGSVRGIYN---HAQYLDKRREMMQWWADWLDE 382 + +E QL+H + Y H YLD+RR MMQ W++ L E Sbjct: 335 YLPHLVETQLSHCESNQIAAAYQTEPHMLYLDERRGMMQEWSNHLSE 381 >UniRef50_C6V8W5 Integrase n=4 Tax=Enterobacteriaceae RepID=C6V8W5_ECOBD Length = 294 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 138/270 (51%), Gaps = 17/270 (6%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAK 84 + + V + + W+LRY+I GKEK L +G YP ++L EAR K ARK IS GIDP + K Sbjct: 1 MLMLVHPNSSRYWRLRYRILGKEKTLALGVYPEVSLSEARAKRDEARKLISAGIDPCEQK 60 Query: 85 KASSN----NNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQ 140 +A SF I + W+ KQ W+ ++ ++ K + + P IG +I + Sbjct: 61 RAKKVVPDLQLSFEHIARRWHASNKQ-WTQSHSDKVLKSLETHVFPFIGNRDITKLNTPD 119 Query: 141 LLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFL 200 LL +R E + E A++ ++R V RYA+ +G +YNPA D+A A+ ++++ P L Sbjct: 120 LLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPAL 179 Query: 201 PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASV- 259 ++P + ++ G V+ +A + +R+ ELR W +D EN + TI A Sbjct: 180 DLSRLPELLSRIGSYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIENAMWTIPAERE 239 Query: 260 -----------MKGRKIHVVPMSDQVVELL 278 K R H+VP+S Q V L Sbjct: 240 PLPGVNFSHRGSKMRTPHLVPLSKQAVPSL 269 >UniRef50_A7JZW2 Site-specific recombinase, phage integrase family protein n=2 Tax=Vibrio sp. Ex25 RepID=A7JZW2_VIBSE Length = 471 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 114/423 (26%), Positives = 193/423 (45%), Gaps = 42/423 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT QI+ A +K Y L DG LYL + +G K W Y K K + +G YP MT Sbjct: 29 LTNTQIKNAAKSDKEYSLSDGGNLYLRIRKNGSKNWLFIYTDFSTKKRKKMGLGSYPNMT 88 Query: 60 LQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYK--------------- 98 L E R A RK ++ GIDP K + + +F AI + Sbjct: 89 LDEVRKVAKELRKQMTKGIDPKLFREKQKLDRLVESQLTFKAIAEKMLLKEEIQETTNRE 148 Query: 99 ----EWYEHKKQVWSVGYATELAKMFDD-------------DILPIIGGLEIQDIEPMQL 141 E E + +V E+ ++ + ++ P +G L + I + Sbjct: 149 KLIVEERERARIKGTVFGQDEIDRITNKVRSSHRKRLFLKRNLYPKLGNLPLTYITAAGV 208 Query: 142 LEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP 201 + VI + +G +E +A +V ++A+ + K N D+ D + + +P Sbjct: 209 ISVIEPMQAKGQLENVKRACCIANQVMKFAVNSNIIKSNCLADIKDNFAKSKVTHMLKVP 268 Query: 202 ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMK 261 +++ ++ V+ A ++ +T R EL +M W +++ +N++ TI A K Sbjct: 269 PNELGEVMAIMSNNQMKPVTRCAFEMQMHTMARADELAAMRWCDINVKNKLWTIPAFYTK 328 Query: 262 GRKIHVVPMSDQVVELLTTLSSIT-KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL 320 G++ H+VP++D + +L + I+ + + F N K I AV + +G Sbjct: 329 GKREHLVPLNDYTLGILEFIRPISGEHIHVFPSDKPNTKFPHISPYAVNSSLNLTSLKGR 388 Query: 321 ESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADW 379 HGFR ST +NEH ++ DAIE+ LAH + + R YN A YLD+R E++Q+W+D+ Sbjct: 389 LVSHGFRGIASTYLNEHKQFREDAIEMCLAHLDKNTTRASYNSALYLDERYEILQFWSDY 448 Query: 380 LDE 382 + E Sbjct: 449 IVE 451 >UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI75_9BACT Length = 398 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 100/371 (26%), Positives = 178/371 (47%), Gaps = 16/371 (4%) Query: 21 DGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP 80 DG L+L V G K W R+ I GK + +G +P+++LQEAR++A+ R+ ++ G DP Sbjct: 20 DGGTLFLKVSPGGSKSWVQRFTIKGKRHDVGLGGWPVVSLQEARERAFDNRRAVAHGRDP 79 Query: 81 VKAKKASSNNN---SFSAIYKEWYEHKKQVWSVGYATE-LAKMFDDDILPIIGGLEIQDI 136 + K+ +S +F A+ +++YE W G T+ ++ + P+ G + + + Sbjct: 80 LAEKQKASKAAAVPTFRAVARKYYEENLPRWKAGRHTDRWLQVVEKYAFPVFGDVPVDRV 139 Query: 137 EPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPD-LADAMKGYR-- 193 +L ++ E A K R R + + G N A + + A+ Sbjct: 140 GREDVLRMLTPIWT-AKPEYARKLRHRVRLILDWCQAHGYVHTNIAGEQIGGALPSMPSV 198 Query: 194 KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY---TALRTKELRSMLWKNVDFEN 250 K++ LP ++ ++AL S SL A LR+ TA+R E R+ W+ +++E Sbjct: 199 KEHHRSLPYAEV---SQALDLIEASGASLSAKLCLRFLILTAVRPGEARNATWEEINWET 255 Query: 251 RIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLL 310 + TI A MK + H VP+S + +++L S + + S +F + KP+ + + Sbjct: 256 KTWTIPAGKMKAKAEHRVPLSREAMQVLERASRV-RGESPLIFPSSLKRAKPLSDMTLTK 314 Query: 311 VIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNHAQYLDKR 369 +++ +G HGFR F T E P IE+ LAH+ G ++ Y + L KR Sbjct: 315 LLRDVGLREKTVPHGFRSSFRTWAGEQTNSPTPVIELCLAHSVGNAIEKAYTRSDLLQKR 374 Query: 370 REMMQWWADWL 380 + +MQ W ++ Sbjct: 375 QRLMQEWGRYV 385 >UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EVM1_ECOLX Length = 396 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 107/396 (27%), Positives = 192/396 (48%), Gaps = 18/396 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL--M 58 MLT ++ KPKEK Y++ D +GLY+ V +G ++ Y I+G+++ +T G+Y + + Sbjct: 1 MLTDTRLRHLKPKEKLYKVNDRDGLYVAVTPAGTISFRYNYSINGRQETVTFGRYGVGGI 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 TL EAR++ A+K ++ G P + K + + W E + + + +T + Sbjct: 61 TLAEARERLNEAKKMVASGRSPAREKARDKARIKDAETFGAWAEKWLRGYQMAESTRDMR 120 Query: 119 --MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 ++ ++ ++ +I L + +RGA A AR +V+R+AI G+ Sbjct: 121 RSVYQRELKSKFAQQKLTEITHEDLRALTDNIVERGAPATAVHAREIVLQVYRWAIERGQ 180 Query: 177 AKYNPAPDLAD--AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 NP+ DL ++ + ++ P +I + + + A K+L T +R Sbjct: 181 KVENPS-DLVRPASIAKFEPRDRALTPV-EIGLMYRYMERVGTTPSIRAAVKLLLLTMVR 238 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 EL + WK ++F + TI MK R H+V +S Q ++++ L + S+F+ Sbjct: 239 KSELTNATWKEINFSEALWTIPKERMKRRNPHLVFLSRQAMDIMIALKTFAGS-SDFILP 297 Query: 295 GRNDKKKPICE---NAVLLVIKQIGYEGLE-----SGHGFRHEFSTIMNEHEWPADAIEV 346 R D P+ N VL + ++ + + H R ST+++E + D IE Sbjct: 298 SRYDSDAPMSSATLNRVLTLTYRLAQKEGDLLPKFGPHDLRRTASTLLHEAGYNTDWIEK 357 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH G VR +YN A+Y ++R EM+Q WA+ +DE Sbjct: 358 CLAHEQKG-VRAVYNKAEYREQRAEMLQDWANMIDE 392 >UniRef50_B4WZP4 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZP4_9GAMM Length = 400 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 110/392 (28%), Positives = 180/392 (45%), Gaps = 19/392 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + A+P +K Y+L D GLYL V G + W+L Y+ DG+ K++T+G P +TL Sbjct: 3 LTSADVRNAEPLQKDYKLHDDKGLYLLVETDGNRTWKLSYRFDGRSKVITLGPCPEVTLS 62 Query: 62 EARDKAWTARKDISVGIDP----VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE-- 115 AR AR+ I+ GIDP VK + S + +F A+ ++W E +V+ + + E Sbjct: 63 FARQLRDEARELIADGIDPISRCVKREVFSPSVETFEAVARDWLE---RVYRLEVSEEQF 119 Query: 116 --LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + ++ ++ IG + ++ P L + G ++R + ++ +A Sbjct: 120 RRTKRQMENYLIASIGKRVVSEVTPEDLKSLAAALGAEGHLDRGKRVLGIGKRIYTHARD 179 Query: 174 TGRAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TG A Y L + G + F +QI + + A K+ + Sbjct: 180 TGVAGYQQTGALRRRLTGSGTEPEFLLSTREQILDLASGVLGQWSRTTTTAALKLTVWLL 239 Query: 233 LRTKELRSMLWKNVDF---ENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 R E+ + W ++D E RI G KI VP+ Q VELL + IT Sbjct: 240 ARPSEIVNARWSDMDLDAGEWRIHRNSTGSPTGSKIITVPLPRQAVELLREIEPITGR-Q 298 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 E++F G D+KK + + + +K++ S R +T + E + A+ I+ QL Sbjct: 299 EYIFPGTRDRKKHLGASTLSAALKKVTRTTPVSTDNLRTLAATALGELGYQAEQIQSQLL 358 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + G + YLDKRREM+Q WAD+LD Sbjct: 359 NQTGDEP---ADRQTYLDKRREMLQAWADYLD 387 >UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=A4F5J8_9BACT Length = 390 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 110/381 (28%), Positives = 181/381 (47%), Gaps = 25/381 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K I+A KP EK Y++ D +GLYL V SG ++ Y+ + +++ +T+GKY +TL Sbjct: 3 LTDKAIKALKPGEKTYKVADRDGLYLSVAPSGTMSFRFNYRYNNRQQTVTLGKYGEITLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN---NSFSAIYKEWYEHKKQVWSVGYATELAK 118 +AR+K A+ D++ GI P K K+ N NSFS ++ E G A K Sbjct: 63 QAREKLLKAKADLAAGISPAKKKQEIKNTLAENSFSVWLDKYTEE------CGVADSTKK 116 Query: 119 M----FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 M D+ + P +G + + +I ++ + + A A R V+ +A + Sbjct: 117 MRGYAIDNYLRPALGKMSLFEITENEVRALAEDLVKQQAPSTALLCRMIIKNVYTFASMH 176 Query: 175 GRAKYNPAPDLA--DAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G K D ++ ++ + P + N + S I S A K++ T Sbjct: 177 GGPKLKSPTDFVRPSSIHTFKSRTRAMSPREIGYVLN-GIEQSSSDISSKSAFKLILLTL 235 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 LR E+ + +W +D+ + I A MK ++ H V +S Q ++L L +++ S+F+ Sbjct: 236 LRKSEVINGVWSEIDWNEKTWRIPAERMKTKRPHNVYLSKQAFDILVCLRTLSTCKSDFI 295 Query: 293 FAGRNDKKKPICE---NAVL-LVIKQIGYEGLE----SGHGFRHEFSTIMNEHEWPADAI 344 F + KP+ N +L L + G+E + H R ST++NE E+ +D I Sbjct: 296 FPAKYGLNKPMATSTPNRLLELGMANAKKAGIEIEPCTIHDLRRTASTLLNEAEFNSDWI 355 Query: 345 EVQLAHANGGSVRGIYNHAQY 365 E LAH G VR +YN A Y Sbjct: 356 EASLAHVASG-VRAVYNVADY 375 >UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWJ5_ARCB4 Length = 410 Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 101/398 (25%), Positives = 191/398 (47%), Gaps = 26/398 (6%) Query: 6 QIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARD 65 Q++ AKP ++ Y L DG GLYL V + K+W+ RY +GK K + YP ++L++AR Sbjct: 11 QVKQAKPTKETYYLFDGLGLYLEVTPNNAKIWKFRYTYNGKRKKTSFQSYPKVSLKQARK 70 Query: 66 KAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 K + + GIDP+ K K + +SF I+ +W E +K + Sbjct: 71 KRDNYNELLFDGIDPIEYYKEQKELKQIEDTSSFKNIFTQWLEMEKSKSGLAQYQWKKTR 130 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 ++DILP IG +I+DI+ + V+ +++ A A+K ++ YA G + Sbjct: 131 IENDILPFIGNKKIKDIKIQDVTNVLIE-KNKTAPVTASKLFGYLKSIYSYAKTKGYIEI 189 Query: 180 NPAPDL--ADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 N D+ + + ++P + + ++ + G A K++ + LR Sbjct: 190 NLLSDINKTHIISSSQVISYPKITEKENLKDLVNSIYNYQGFYSVKNALKLVLHLPLRAG 249 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHV----VPMSDQVVELLTTLSSITKPVSEFV 292 L ++ W N+DF+N+++ I MK + + +P++D+V+ +L S T +F+ Sbjct: 250 NLCNLQWSNIDFDNKLLIISRDEMKVKDKNFDDFRMPLTDEVINILNEQKSYT-GYQKFI 308 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESG-----HGFRHEFSTIMN----EHEWPADA 343 F G N+ + PI + +K +G++ +G HGFR F ++++ + + + Sbjct: 309 FLGTNN-RTPINVESPNKALKIMGFDDEVNGRKITLHGFRGTFRSLIDTLDIDSNFSFET 367 Query: 344 IEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWL 380 E L H V Y H + Y+++ +M +W+D++ Sbjct: 368 KERALDHHEKSKVVRAYTHKSDYINQLIPLMNFWSDYI 405 >UniRef50_B9KC61 Site-specific recombinase, phage integrase family n=5 Tax=Campylobacter RepID=B9KC61_CAMLR Length = 392 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/375 (27%), Positives = 179/375 (47%), Gaps = 37/375 (9%) Query: 24 GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKA 83 GLY++V SG+K+++ R + +T+G+YPL++L E R+ A + K + G + A Sbjct: 33 GLYVFVYPSGRKLFKTR---QANDTYITLGEYPLLSLAELREIAINSHKLKAKGQNISNA 89 Query: 84 KKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLE 143 K+ F +Y E E+ ++ + + + I + I DI+ + ++ Sbjct: 90 KRLK-----FGVLYDEVLENARKSNLAAKTIQRGLSYKEGIFKSLEYKNINDIKRVDIVN 144 Query: 144 VIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPAD 203 +++ E + A + KA+ +VF YA+ + NP + K N F + Sbjct: 145 ILKTIEHKSATLQ--KAKIWINKVFEYALQLEIIENNPVASI--------KNNIVFKKPN 194 Query: 204 QIPAFNKAL--ATFSGSIVSLIATKV----------LRYTALRTKELRSMLWKNVDFENR 251 Q+ L + I +LI + + + TA R + W +DF+N Sbjct: 195 QVIHQPTLLDESDIKEYINTLIHSDIKQSHKNLMLFVLLTAQRPGNVIKATWDEIDFKNE 254 Query: 252 IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLV 311 I TI A MK RK H + +S Q + +L +I V+++VFAG + KK EN Sbjct: 255 IWTISAQKMKMRKEHNIALSKQAISILKNQYAI--KVNDYVFAG-SSKKGCNSENITCNT 311 Query: 312 IKQIGYEGLESGHGFRHEFSTIMNE----HEWPADAIEVQLAHANGGSVRGIYNHAQYLD 367 K++GY+G++S HGFR F +I NE H D E LAH ++ YN ++ ++ Sbjct: 312 NKRLGYKGIQSAHGFRAMFRSIANEKQLEHGVSMDIAEQCLAHEQKNAILKAYNRSKNIE 371 Query: 368 KRREMMQWWADWLDE 382 +R +MQWW D++++ Sbjct: 372 LKRILMQWWGDYIEK 386 >UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella RepID=A5I9N5_LEGPC Length = 407 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 176/382 (46%), Gaps = 18/382 (4%) Query: 7 IEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDK 66 I K KEK Y +G G + + + K W RYKI+G T+G YP M+L A+ + Sbjct: 9 IRNLKAKEKRYEEFEGGGFGIRITPNNVKTWIYRYKINGVTTKFTLGHYPAMSLSNAKRR 68 Query: 67 AWTARKDISVGIDP--VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDI 124 + G+DP V + +NN+ + WY + + V + + D+DI Sbjct: 69 FLELSQMRREGVDPKTVIQAQEEQDNNTVDKLALNWYTNYIEK-HVKRPLVIKRQIDNDI 127 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPD 184 +P++G ++ D++ + + + RGA AN+ ++F YA+ G ++NPA + Sbjct: 128 IPLLGKKKLDDVQTKDISDALDTIVKRGARILANRTLSSIKQMFNYAVSRGYTQFNPASN 187 Query: 185 L-ADAMKGYRKKNFPFLPADQIPA----FNKALATFSGSIVSLIATKVLRYTALRTKELR 239 + + + G K L ++I A + L S + IA K+L T +RT ELR Sbjct: 188 IRSRDIGGIEKPKERVLTLEEIKALWLFLDSDLTQMSTQ--TRIAIKLLLLTGVRTVELR 245 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 W +DFE + TI A K IH V +S L L ++ S++V G D Sbjct: 246 LASWHEIDFEASLWTIPALHSKASIIHKVHLSKLAKSLFLQLKPLSH--SDYVLTGV-DG 302 Query: 300 KKPICENAVLLVIKQIGYE-GLE--SGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGS 355 PI ENA+ IK+I + G+ + H R F+T + E + IE L H Sbjct: 303 FHPITENALPRAIKRIQEKLGIPDWTAHDLRRTFATQLGETLQIDPVVIEKCLGH-KMPR 361 Query: 356 VRGIYNHAQYLDKRREMMQWWA 377 + YN + L +RRE ++ WA Sbjct: 362 IMATYNRNEMLPQRREALERWA 383 >UniRef50_A9MQQ9 Putative uncharacterized protein n=9 Tax=Salmonella enterica RepID=A9MQQ9_SALAR Length = 247 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 4/188 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +I +AK +K Y+L D GLYL V SG K+W RY+ DGKE L G YPL+TL Sbjct: 3 LNDSKIRSAKTLDKSYKLTDSQGLYLTVSTSGAKLWYFRYRFDGKENRLAFGAYPLVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS----SNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 EAR+K ARK ++ GI P + +K + + +F I W+ ++WS G+A ++ Sbjct: 63 EAREKRDAARKLLASGICPSQLRKTNDASVDESRTFKFIATAWHTSCLKLWSEGHADKIL 122 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + P IG ++I IE L ++++ +D+G + A + R+ ++ R+A+ G Sbjct: 123 TCLKRYVFPDIGAMDIAKIETRHLAQLVKAIDDKGVHDVAGRVRQHLTKIMRHAVQQGVI 182 Query: 178 KYNPAPDL 185 KYNPA DL Sbjct: 183 KYNPAYDL 190 >UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU Length = 419 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 111/390 (28%), Positives = 175/390 (44%), Gaps = 39/390 (10%) Query: 14 EKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 ++P DG GL L V + +K W RY + + L +G +P ++L++AR +A R D Sbjct: 13 DQPGSYQDGRGLILRVSATLRKSWVFRYMLAKQRHDLALGTFPALSLRDARLEADKYRLD 72 Query: 74 ISVGIDP------VKAKKAS--SNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDIL 125 I+ G+DP VKA KAS + +++F A + + WS + + + Sbjct: 73 IARGVDPAAERAKVKAAKASRTTTSHTFRASAERYIRTHSSSWSKKHHQQWQNSLTKHVY 132 Query: 126 PIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA-IVTGRAKYNPAPD 184 P IGG I +++ +L+V+ + + AN+ R R V A + R NPA Sbjct: 133 PAIGGFRIAEVDTDDILDVLTPIWSKIPVT-ANRVRNRIELVLDAAKALKLRQGENPARW 191 Query: 185 LADAMKGYRKKNFPFLPADQIPAFNKA-----LATFSGSIVSLIATKVLRYTALRTKELR 239 K K++ +P A L + GS + +L TA R +E+ Sbjct: 192 RGHLDKLLPKQSHTVVPFPSPTPLRTAELLARLDSLDGSAARAVEFAIL--TATRNQEVS 249 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 W +D+E +I I A MK K H VP+++Q++E+L G++DK Sbjct: 250 GAQWPEIDWEEKIWYIPAERMKAGKAHRVPLTEQMLEVLRQQ------------VGKHDK 297 Query: 300 --------KKPICENAVLLVIKQIGYEGLESGHGFRHEFST-IMNEHEWPADAIEVQLAH 350 PI NA+ V+ Q+ +G+ HGFR F T E + + E+ LAH Sbjct: 298 WIFLNSWRTGPIPGNAMARVLDQLQVDGVVP-HGFRSTFRTWAAEETDHQREVCEMALAH 356 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 V YN LDKRR +M+ W D+L Sbjct: 357 TLNSKVEAAYNRGDLLDKRRALMKDWGDFL 386 >UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID=C6ALW6_AGGAN Length = 413 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 109/403 (27%), Positives = 182/403 (45%), Gaps = 22/403 (5%) Query: 2 LTVKQIEAAKPKEKPYRLL-DGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLM 58 LT Q+E K +L DG GL+L + +G K W+ RY+ I +G +P + Sbjct: 8 LTNTQVERVKYTPNGKNVLNDGKGLFLEIYPTGAKKWRFRYERPITKARTKFNIGDHPSI 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGY 112 TL +AR K ++ GIDP + K N+F + W E+K++ Sbjct: 68 TLAQARVKRDEYNALLAQGIDPQEHAKQKHQALQFQLENTFLKWAERWKENKEKKVKADT 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFE---DR--GAMERANKAR--RRCG 165 + + + +L +G + I + P L++ + E DR G + R R Sbjct: 128 LRKDWRRIEMYLLESLGQIPIDKVLPPLLIQALTPLEAMKDRRTGTADSDTLKRVIRLAN 187 Query: 166 EVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGS--IVSLI 223 E+ YA+ G +NP + D ++ P + +++P ++ LI Sbjct: 188 EILTYAMNAGAIPFNPCLSVKDIYSFAPAESHPHIEPEELPLLLTDISESKAQPRTKDLI 247 Query: 224 ATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSS 283 ++L T +R E + W D EN++ TI A MK + H VP+S Q + LL L S Sbjct: 248 LFQLL--TMVRPSEASNAEWAEFDLENKVWTIPAEKMKMKHPHKVPLSSQTIRLLQHLQS 305 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPA-D 342 T FVFA RN +P+ +V + +GY+G + HG R T + E + + Sbjct: 306 QTGH-KRFVFASRNKINEPMNSQSVNKALVDMGYKGKQDAHGLRSIGRTYIGEKQMDGYE 364 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +E+ +AH G S IY+ A + ++R +MQ W D++++ E Sbjct: 365 VLEMCIAHKVGTSTGKIYDKADFFEQRIPIMQAWGDFVEQCAE 407 >UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZM1_SULD5 Length = 416 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 110/407 (27%), Positives = 193/407 (47%), Gaps = 35/407 (8%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLM 58 +LT K+I+ KP++KPY D NGL + + G+K+W+ Y K++ T G YP Sbjct: 8 LLTDKEIKNFKPEDKPYIKSDINGLRILIHPDGRKIWEFVYTSPTLYKKRKSTFGTYPKT 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKK-QVWSVG 111 TL+EARDK T I GIDP+ A++ + FS + W++ ++ + Sbjct: 68 TLKEARDKRETYLNLIKQGIDPIDAQREEKAEVKLQKESDFSNVVNLWFQSQESHIVHST 127 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCG---EVF 168 Y + A +FD ++P++ I +I+ +L+++I+ A++ A+R G +++ Sbjct: 128 YKKKRA-LFDTTVIPVLKHKSIAEIKHDELVQIIK----IKAIQTPETAKRLLGYFHDLW 182 Query: 169 RYAIVTGRAKYNPAPDL--ADAMKGYRKKNFPFLPADQI-PAFNKALATFSGSIVSLIAT 225 ++A G +N P++ + KK++ + I ++ T+ G I + A Sbjct: 183 QFACTHGYCDFNIVPNIHAKSVLPKIVKKHYACITDPSILKQLVNSIYTYGGHISTKNAL 242 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK--IHVVPMSDQVVELLTTLSS 283 K + + LR L S+ W VDFE +ITI MK + ++P+SD+ + +L Sbjct: 243 KFVLHVPLRAGNLVSLKWAYVDFEKHLITIPRKEMKAKSGDDFILPLSDEAIAILQEQYL 302 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESG-----HGFRHEFSTIMN--- 335 T EFVF N I E ++++G+ G H FR F ++++ Sbjct: 303 YTSH-KEFVFVADNGLH--IDEVTPSRALQRMGFNNETLGNKQRLHSFRATFRSLVDTHQ 359 Query: 336 -EHEWPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWL 380 EH +A E L H G V Y A Y ++ R ++ WW+ ++ Sbjct: 360 MEHRSSYEAKEKVLDHIVGSGVERAYTQKAIYTEEMRLLLTWWSGYI 406 >UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=B5JZM6_9RHOB Length = 411 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 98/371 (26%), Positives = 174/371 (46%), Gaps = 10/371 (2%) Query: 16 PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDIS 75 P + DG+GL+L V SG K W R + GK + +G L++L EAR+ A RK Sbjct: 36 PGKYNDGHGLFLKVVTSGAKRWVQRIVVRGKRTEIGLGSASLVSLAEARETALENRKLAR 95 Query: 76 VGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGGLEIQ 134 G DP++AK+ S +F ++ ++ + W + +A + + P + L++ Sbjct: 96 AGGDPLQAKRTSEALLTFEEASRKVHKIHEPTWRNKKHAAQFLSTLETYTFPRMSNLKVS 155 Query: 135 DIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRK 194 ++ +L V++ E A + R+R G V ++A+ G + NPA ++ A+ ++ Sbjct: 156 EVTTADVLAVLQPIWLEKP-ETAKRVRQRIGTVMKWAVANGWRQDNPAGAISQALPKQKQ 214 Query: 195 --KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRI 252 K+ LP D++ A+ + + +A ++ TA R+ E+R W +D Sbjct: 215 PVKHRKSLPYDEVSGCLVAVRSSRAFNATKLALELTVLTACRSGEVRLAEWSEIDLAKAE 274 Query: 253 ITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVI 312 TI A MK K H +P+S + VE+L ++ VF P+ + + ++ Sbjct: 275 WTIPAQRMKASKEHRIPLSGRAVEVLEAAKALDDGTG-LVFPSTTG--NPLSDMTLSKLV 331 Query: 313 KQIGYEGLESGHGFRHEFSTIMNEHEWPADAI-EVQLAHANGGSVRGIYNHAQYLDKRRE 371 K +GY+ HGFR F T E A + E LAH+ Y + +KRR+ Sbjct: 332 KGLGYD--VDVHGFRTSFKTWCQERTTTAREVSEAALAHSIQNKAEAAYARSDLFEKRRK 389 Query: 372 MMQWWADWLDE 382 +M+ W+ ++ E Sbjct: 390 LMEQWSCFVAE 400 >UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=Proteobacteria RepID=A2SG96_METPP Length = 466 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 116/424 (27%), Positives = 189/424 (44%), Gaps = 53/424 (12%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 LT Q++A KP++K Y++ D +GLY YV SG + Y+I + + LT+G+Y Sbjct: 21 LTDLQLKALKPRDKAYKVSDRDGLYAYVAPSGTVSLRYDYRIGRRRETLTLGRYDATAPA 80 Query: 58 --------------MTLQEARDKAWTARKDISVGIDPVKAKK----ASSNNNSFSAIYKE 99 ++L EAR A++ + G+ P +AK A S+ +F + Sbjct: 81 RVPRSLDVLEYGMGLSLAEARLLLTKAKRALEQGVSPSRAKAEQKAAESDALTFGKWAER 140 Query: 100 WYEHKKQVWSVGYATELAKMFDDDILPI------------IGGLEIQDIEPMQLLEVIRR 147 ++E K S G + D L + +G L +++I P +L + Sbjct: 141 YFEFKGDPKSKG------EQLADSTLAMRRSTYKRALEKPLGKLMLEEITPNRLAALCDD 194 Query: 148 FEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDL-ADAMKGYRKKNFPFLPADQIP 206 + + A AR V+R+ G NPA + A A+ + ++ P+ ++ Sbjct: 195 IKAQRGPAVAVHAREIVLMVYRHVQRKGIEVPNPAERVQASAIARFEPRDRALSPS-ELR 253 Query: 207 AFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIH 266 F AL + +A + + T +R E W + F+ TI + MKG + H Sbjct: 254 LFLAALDQCATMPTLRLAVRFVLLTGVRKGEFIGATWDEIVFDTETWTIPSRRMKGGRAH 313 Query: 267 VVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESG--- 323 VV +SDQ +++LTTL S S ++ GR D PI +A L + + G+++ Sbjct: 314 VVYLSDQAMDILTTLRSCFS-ASRYLHPGRYDSDLPIS-DATLNRVIAMAIRGIQATAPE 371 Query: 324 ------HGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 H R FST +N ++ IE+ LAH + YN A+Y +RR MMQ WA Sbjct: 372 FQPFTVHDLRRTFSTSLNRAKFDERWIEMALAHVPRNRIAATYNVARYAAERRIMMQAWA 431 Query: 378 DWLD 381 D LD Sbjct: 432 DMLD 435 >UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FR8_THICR Length = 396 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 122/395 (30%), Positives = 182/395 (46%), Gaps = 37/395 (9%) Query: 8 EAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMTLQEARD 65 +A P K L DG GL + + K+ ++ RY+ +KI L +G YP M+L+ AR+ Sbjct: 12 KAVHPSTKS--LSDGKGLSIEIMPKAKR-FKFRYQRPVNKKINNLVLGYYPSMSLKAARE 68 Query: 66 KAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDIL 125 A R+ + GIDP + SS F I + + + K WS + +++ + Sbjct: 69 IAQQYRELLKKGIDP--KYQTSSEKVDFDHIIQLYLKKGKADWSEKHFNTTKGRYENFLK 126 Query: 126 PIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDL 185 G + I + ++ G+ A K + A + G K+NPA Sbjct: 127 NPFGNRDAAQITSFDIYNLLESVAQSGSYGTAEKLSYIISGAYSQAAILGMVKFNPA--- 183 Query: 186 ADAMKGYRKKNFPFLPADQIPAFN-------KALATFSGSIVSLIATKVLRYTAL----- 233 A MK K Q+P FN + L F I +L T + TAL Sbjct: 184 AGVMKQVTKTK----KTQQMPHFNLTRKGESERLGRFLNDIKALNKTNIAVKTALLLSPL 239 Query: 234 ---RTKELRSMLWKNVDFENRIITIDASVMKGRKIH---VVPMSDQVVELLTTLSSITKP 287 R+ L S+ ++ D +N+ + I+A MK K H +VP+S Q + LL TL + TKP Sbjct: 240 LFMRSGSLASLKLESYDKDNKWLLINAEDMK--KDHSDFIVPLSTQAINLLETLIAATKP 297 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEV 346 +VF R K I A+ + G+ + + HG RH +T + E + + E+ Sbjct: 298 -KIYVFESRASKLGHIRIEAINKAKSRSGWRFDDVTIHGLRHTATTYLTEIGFDYEVTEM 356 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 QL H G VRGIYN A +LDKRREMMQ WAD+LD Sbjct: 357 QLHHKLVG-VRGIYNKAMHLDKRREMMQKWADYLD 390 >UniRef50_C5F036 30S ribosomal protein S15 n=3 Tax=Campylobacterales RepID=C5F036_9HELI Length = 397 Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 101/389 (25%), Positives = 189/389 (48%), Gaps = 28/389 (7%) Query: 12 PKEKPYRLLDGNGLYLYVPVSGKK-----VWQLRYKIDGKEKILTVGKYPLMTLQEARDK 66 P++K R D + LYV V+ K + Y+ K ++ +GKYP ++L +AR K Sbjct: 13 PQDKRRRHKDASVKNLYVEVNPNKYGATYTFYFCYRQSNKVNVVYLGKYPAISLMDARLK 72 Query: 67 AWTARKDISVGIDPVKAKKASSNNNSFSA--IYKEWYEHKKQVWSVGYATE-LAKMFDDD 123 A ++++ +D + K + + I +E +E KQ+ G + A+ + Sbjct: 73 A----NELNLRLDKNEVLKIETRREKRNKERILREIFEEWKQIAIKGKINQDFARPLELH 128 Query: 124 ILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAP 183 I+ G + D+ +L+ + E + + +YA+ Y A Sbjct: 129 IINQYGNKPVADLTKQDVLKSFDKLYLEDKRETIKRTYIHLKNLIKYAL---NRDYLQAT 185 Query: 184 DLA----DAMKGYRKKNFPFLPADQIPAFNK---ALATFSGSIVSLIATKVLRYTALRTK 236 +L D + G + PF + F A+ +++G++ +A +V Y LR+ Sbjct: 186 NLLTLDIDTLYG-KLTPTPFRAITDLDTFRDLLLAIDSYNGNLFVKVALQVSPYLFLRSS 244 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 +R++ W+ +D + +I+ I A++MK ++ +VP+SD V++ + + +T P S ++F Sbjct: 245 TMRNLKWEYLDEKEKILKIPANIMKAKEEFLVPLSDSVLDKILAIKELTYP-SPYIFPSD 303 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE----HEWPADAIEVQLAHAN 352 K K + EN + IK++G+ L HGFR ST + E H+ ++ IE+ L H Sbjct: 304 ISKGKALAENTLNYAIKRLGFGELMVYHGFRSTASTFLYENKKNHKQDSEVIELCLDHRE 363 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLD 381 V+ +YN + L+ RRE+MQWW+D++D Sbjct: 364 RNKVKAVYNRSLRLEDRRELMQWWSDYID 392 >UniRef50_A5G0X3 Putative uncharacterized protein n=2 Tax=Acidiphilium cryptum JF-5 RepID=A5G0X3_ACICJ Length = 268 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/256 (30%), Positives = 130/256 (50%), Gaps = 8/256 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I A+ ++KPY++ D GLYL V +G K+W+ RYKI GK+K+L++G Y + L Sbjct: 1 MLTDIAIRKAQIRDKPYKMFDSYGLYLLVTPAGGKLWRFRYKIGGKDKLLSIGPYSEVML 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKK-----ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 ARD AR + G DP +K A++++ F + +W+ K W+ + + Sbjct: 61 SAARDARDEARAGLRAGRDPSLVRKQLRAQAANDDRKFEKVACDWHTLNKSRWTERHTAD 120 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + P++G +++ I P +L+VIRR E R A+E A + R+R +F +A+ G Sbjct: 121 VMISLEQMVFPLLGNVDVAVITPPMVLDVIRRIEARPALETARRVRQRMSAIFLFAMGLG 180 Query: 176 RAKYNPAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 A +PA + AM K P + ++ A V+ +A + L T +R Sbjct: 181 LATTDPAAVIQKAMAPMTKGRQPAVVTLEEAREALAACEAIPAHPVTRLAMRFLALTHVR 240 Query: 235 TKELRSMLWKNVDFEN 250 E+ W +FE Sbjct: 241 PGEVHGTRW--TEFEG 254 >UniRef50_B5WB94 Integrase n=1 Tax=Burkholderia sp. H160 RepID=B5WB94_9BURK Length = 295 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 25/292 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKP+ KPY+L D + +YL V VSG KVW+ Y++DGK+ T+G++P +++ Sbjct: 3 LTYPLLQNAKPRSKPYKLRDRDSMYLRVSVSGSKVWKFDYRLDGKDCSYTLGRFPNVSIA 62 Query: 62 EARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR A K ++ GI P ++ + + N+ + +EW E + W+ Y + Sbjct: 63 DARQLRNAAAKLVASGIHPKAYEKQLQQQTVAHQKNTLWPVCEEWLEDNRGKWTAYYHAQ 122 Query: 116 LAKMFDDDIL-PIIGGLEIQDIEPMQLLEVIRRFEDR-----------GAMERANKARRR 163 + + +G + ++DI+ + ++++ R GA A + R+ Sbjct: 123 ATRFLARYVKGSPLGTMPVRDIKVSHVYDLLQSIAKRKALAVDERKKEGAPHIAIRVRQH 182 Query: 164 CGEVFRYAIVTGRAKYNPAPDL--ADAMKGYRKKNFPFLPADQIPAFNKALATFS--GSI 219 +FR AI++GR NP L +DA+ ++ L A ++ LATFS G+ Sbjct: 183 LDAIFRRAIISGRVDANPVAALKASDAVMLPPTRHNRALDAHEV---RHLLATFSVTGTQ 239 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMS 271 + +A +L T+LR+ ELR W+ +D ++ I I MK + HVVP+S Sbjct: 240 RTHLAMHLLLLTSLRSAELRGARWREIDLQSAIWAIPEERMKMERPHVVPLS 291 >UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G0X2_ACICJ Length = 410 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 111/387 (28%), Positives = 171/387 (44%), Gaps = 30/387 (7%) Query: 19 LLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGI 78 L DG GLYL V G K W RY + G++ +++G ++L EAR++A R + G Sbjct: 23 LHDGGGLYLRVRADGSKSWAFRYTMAGRKHWMSLGPLRDVSLSEAREQARQLRNLVRDGF 82 Query: 79 DPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAKMFDDDILPIIGGL 131 DP+ ++ A +F A+ + E + WS +A + PIIG Sbjct: 83 DPLAQRRERQHLAAEQTARTFDAVAAAYVEAHRAEWSNPKHAQQWENTLATYASPIIGKR 142 Query: 132 EIQDIEPMQLLEVIRRFEDRGAM--ERANKARRRCGEVFRYAIVTG-RAKYNPA--PDLA 186 + +I LL+V R + A E A++ R R V YA V G R+ NPA P Sbjct: 143 PVSEI---SLLDVRRVLDPIWAEKPETASRLRGRVEAVLAYATVHGWRSGDNPARWPGFL 199 Query: 187 DAMKGYRK-----KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSM 241 D + + K+ L +PAF L + +L TA R+ E R Sbjct: 200 DQIYAPKAKVRAVKHHAALDYHDMPAFMAELREREAVSARCLEFAIL--TATRSGEARGA 257 Query: 242 LWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKK 301 W +DF+ + I A MK +K H VP++ + VELL ++ + +F G K Sbjct: 258 RWDEIDFDAAVWVIPAPRMKMKKEHRVPLAPRAVELLREMAGRSPRRDGLIFPG-GAPGK 316 Query: 302 PICENAV--LLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRG 358 P+ + A+ + + + G+ + HG R F E +P + EV LAH N Sbjct: 317 PMTDVALAKAVAVLRPGF----TAHGMRSSFRDWAAEMTSFPREIAEVALAHINKDRTEA 372 Query: 359 IYNHAQYLDKRREMMQWWADWLDEKVE 385 Y L KRR++M+ WA++ VE Sbjct: 373 AYQRGDLLAKRRQLMEAWANYCAGLVE 399 >UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholderiales RepID=A1W6C2_ACISJ Length = 459 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 110/388 (28%), Positives = 174/388 (44%), Gaps = 32/388 (8%) Query: 15 KPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 KP R DGNGLYL + + K W RY E + +G + L EAR++A AR + Sbjct: 17 KPGRYSDGNGLYLQITKALVKSWIFRYARGTGEHFMGIGPVHTVNLAEAREQARKARLLL 76 Query: 75 SVGIDPV--------KAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDIL 125 G+DP+ KAK ++N F E+ + K+ W + + + + Sbjct: 77 RDGVDPLMHRAEALAKAKAVQASNKIFRDCMDEYIKSHKESWRNEKHQKQWEATLVEYAC 136 Query: 126 PIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPA-- 182 P+ G + ++ I +L+V+ + E A++ R R V +A G R NPA Sbjct: 137 PVFGKMHVRLINTPLVLQVLEPIW-KTKTETASRVRERIERVLAWATTQGFREGENPARW 195 Query: 183 -----PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY---TALR 234 L K + ++ P LP + AF + LA G IA + L++ TA R Sbjct: 196 RGHLQELLPKPSKLKKVRHHPSLPYGHVGAFVRLLAREKG-----IAARALQFTILTACR 250 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T E+ W +D + ++ I MK K H VP+ V LL L + PV +VF Sbjct: 251 TGEVIFAKWNEIDLDAKVWIIPKERMKAHKEHRVPLVRDAVTLLERLRGL-DPV--WVFP 307 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANG 353 G + +P+ A+ V++++ + + HGFR F T E +P + E+ LAH G Sbjct: 308 G-AKQNRPMSNMAMANVLERMQRSDI-TVHGFRSTFRTWAAERTLYPKEMPEMALAHKVG 365 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 V Y ++RR +M+ WA+W Sbjct: 366 TEVEEAYRRTDLFERRRALMRDWAEWCS 393 >UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QCE7_9RHIZ Length = 418 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/381 (28%), Positives = 176/381 (46%), Gaps = 25/381 (6%) Query: 14 EKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 +KP DG GLYL V SG + W RY D K + L +G ++L AR A AR+ Sbjct: 17 KKPGLYPDGAGLYLRVKPSGARSWVFRYMHDRKPRYLGLGSAASVSLATARSLAGDARRQ 76 Query: 74 ISVGIDPVKAKKA----SSNNNSFSAIYKEWYE-----HKKQVWSVGYATELAKMFDDDI 124 + +G DP++AK+A ++ + + + +KE E H+ + + + + Sbjct: 77 LDLGQDPIEAKRAAERETAADKARAMTFKECAEAYMAAHEPSWKNAKHCEQWHSTLRRYL 136 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR-AKYNPA- 182 P GG+ + + + E I+ E A++ R R V +A G + NPA Sbjct: 137 YPKFGGIAVALVTTEMVFEAIQPIWH-SMPETASRVRGRIEVVIDWAKARGAFSGENPAR 195 Query: 183 --PDLADAM----KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 LA+ + K + ++ +P D +PA L +G + +L TA RT Sbjct: 196 WRGHLANLLPKPSKVAKVEHHAAMPFDDLPALMSELRAATGLTSRALEFTIL--TAARTT 253 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E W D E +I T+ A MK K H VP+S + VE++ L ++ + +EFVF G Sbjct: 254 EALGAQWSEFDLEKKIWTVPAVRMKAGKDHRVPLSTRAVEIIKELETVKR--NEFVFPGE 311 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGS 355 + + ++L++++++ G + HGFR F E +P +E+ LAHA Sbjct: 312 KPGRH-LSNMSMLMLLRRLK-RGELTVHGFRSTFRDWAAETTSFPNFIVEMALAHAIESK 369 Query: 356 VRGIYNHAQYLDKRREMMQWW 376 V G Y L+KRR +M W Sbjct: 370 VEGAYRRGDLLEKRRALMVAW 390 >UniRef50_Q98MP8 Probable prophage integrase n=2 Tax=Proteobacteria RepID=Q98MP8_RHILO Length = 402 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 108/409 (26%), Positives = 193/409 (47%), Gaps = 40/409 (9%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT+++I++ K +P + LY ++ SG+ W +RY + G+ + +++ T+ Sbjct: 1 MLTIREIQSLVHKGEPGQWSHTKALYFFIAPSGRPFWAIRYMLKGRRRQMSLTDSIPATV 60 Query: 61 QEARD---KAWTARKDISVGIDPVKAKKASSNNN--------SFSAIYKEWYEHKKQVW- 108 +E + + T R+ + GIDP+ ++A+ + +F ++ ++ + W Sbjct: 61 RELKQIELLSETEREKVRKGIDPLAEREAAKAASPEPVRQLVTFKSVALDYIAANRGGWK 120 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + + + + P+IG LE Q I ++L++++ E A++ R R + Sbjct: 121 NAKHVQQWENTLATYVYPVIGHLEPQSITTAEVLKILQPLWA-TKRETASRVRSRVETII 179 Query: 169 RYAIVTGRAK--------YNPA---PDLADAMKGYRKKN-FPFLPADQIPAFNKALATFS 216 A G ++ +NPA +L + G ++KN F +P +IPAF +++A Sbjct: 180 GAAKAKGMSEKPEIWANHHNPARWADNLEFWLNGKQEKNHFSAMPYPEIPAFAQSIAERE 239 Query: 217 GSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVE 276 S A + L TA RT E W +D E + TI AS MK K H VP+S + ++ Sbjct: 240 D--YSTKALQFLILTATRTNETLGAEWSEIDTEKAVWTIPASRMKSGKEHRVPLSSEALK 297 Query: 277 LLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESG----HGFRHEFST 332 L+ +L I F A RN K + A+L+V++ GL+ G HGFR F Sbjct: 298 LVASLLRIEGNPYLFPGAIRN---KSLSNMALLMVMR-----GLKLGHYVPHGFRSAFRD 349 Query: 333 IMNEHE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 E +P +E+ LAH V Y ++KRR++M+ W+ +L Sbjct: 350 WAAEETVYPNHIVEMALAHTIKNKVEAAYRRGDLMEKRRQLMEDWSAYL 398 >UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JSX8_PASHA Length = 413 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 116/412 (28%), Positives = 187/412 (45%), Gaps = 47/412 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYV-PV-SGKKVWQLRY-KIDGKEKI-LTVGKYPL 57 L QIE AK K+K Y L DG+GL L V P+ G K+W Y K + LT+G+YPL Sbjct: 8 LNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKIWIFNYTNPQTKNRTNLTIGRYPL 67 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVG 111 +TL EAR R I GIDP + KK + N++F + + ++ G Sbjct: 68 ITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAENRVNDTFRNVAESYFN--------G 119 Query: 112 YATELAK----------MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKAR 161 E AK ++ I P IG +++I+ L+++ + D+ + K Sbjct: 120 IYKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALVDIYSKVADKSNTLK--KLH 177 Query: 162 RRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNF---PFLPADQIPAFNKAL--ATFS 216 + V +AI G + + + A+K + K P + +++P L A S Sbjct: 178 QLVSAVMDHAITQGIIE---SHNCRLAVKNFYIKPSTPNPTIELEELPQLFTDLHNAKLS 234 Query: 217 GSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKG----RKIHVVPMSD 272 +L+ L TALR E + WK +DFE ++ I MKG ++ H VP+S Sbjct: 235 KQTYALVCWSFL--TALRPNEAVNAEWKEIDFEKKLWNIPKEKMKGKADKKRPHSVPLSS 292 Query: 273 QVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFST 332 Q +++L + + S FVF GR+ KP+ V +K+ GY+ + HG R T Sbjct: 293 QALKILEMM-KMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRNGYKDRLTAHGIRAFVKT 351 Query: 333 IMNEHEWPADAIEVQLAH--ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 ++ + E L+H G + YN +L++R +MQ D+ ++ Sbjct: 352 FLSSRKVDRHVSESILSHLLEGGDDLENTYNRYDFLEERVPVMQLLGDYCEQ 403 >UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria RepID=D1D4Y4_NEIGO Length = 406 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 97/389 (24%), Positives = 185/389 (47%), Gaps = 20/389 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q++ AKP++K Y+L DG GL L+V +G++ W+L + DG+++ +++G+YP +L Sbjct: 16 LSANQVKNAKPRDKLYKLSDGGGLALWVYPTGRRSWKLSFMQDGRQQTISLGRYPDFSLA 75 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 EAR+ R+ + G + V K + + +F + ++W+ + S YA ++ + F+ Sbjct: 76 EAREWREEVRRKRAHGENVVNKKVRA--DFAFEKVARDWFVRWSKGRSEKYAGQVMRNFE 133 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 + P IG L+I+ + ++ +R E RG ++ K + VF +A+ +G NP Sbjct: 134 RWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKMVFAFAVGSGMMDINP 193 Query: 182 APDLADAM-KGYRKKNFPFLPADQIPAF------NKALATFSGSI----VSLIATKVLRY 230 + + + + KN L ++P A ++G + V+ L Sbjct: 194 VAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRVHIHPVTRFCIYWLLL 253 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T R +E M W +D E + I A K R+ H VP+S + +L + Sbjct: 254 TMTRIREAALMEWSELDGE--VWRIPAERKKERRGHDVPLSRAMRWVLDQARGLNVN-GR 310 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLA 349 FVF N + I + + + +++ G + + HG R T + E + D E LA Sbjct: 311 FVFESVNFQGH-INKESPHVAMRRSGLD--TTAHGLRSLARTYLREVLKVYNDVAEKLLA 367 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWAD 378 H+ G + YN ++ ++R++ + W + Sbjct: 368 HSLGTRTQTAYNRSELWEERKDAPERWGN 396 >UniRef50_A7I3A4 Putative prophage integrase n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I3A4_CAMHC Length = 403 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 107/398 (26%), Positives = 195/398 (48%), Gaps = 28/398 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEK-----ILTVGKYP 56 LT +I+ AKP++ P L DG+ L L + + K+ W R+K G +K + YP Sbjct: 8 LTDTKIKNAKPEDSP--LYDGDNLMLKITKASKR-WYFRFKQAGTDKYTEKALCKPNDYP 64 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEH-KKQVWSVGYATE 115 ++L +AR+ +K I+ DP K + + ++ EW + + + Sbjct: 65 TVSLAKAREITAKYKKAIAENKDPFKKAEIIT----IKRVFDEWKQKFNNSLLQKVKERK 120 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 +A++ ++ I I I DI +L++++ + + A RA + + E+F YA G Sbjct: 121 VAEVKNNFINKIDEYTPINDITKRELVDILEQ-RAQTAPARAKRFQGYLNEIFSYAETKG 179 Query: 176 RAKYNPAPDLA--DAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYTA 232 + N +++ M+ ++ +N+ + + K + + S ++ A K+L + Sbjct: 180 YIENNFIKNISLNSLMEQHKTENYKAITDEADFKKLVKVIYSLDNSPIN-TALKILLHLP 238 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRK--IHVVPMSDQVVELLTTLSSITKPVSE 290 LR+ L SM W+ +DF + + I MK + ++P+SD+V+++L T + I K +S+ Sbjct: 239 LRSANLISMQWREIDFMQKELKIPRPNMKVKSGDDFILPLSDEVIKILETHAEIYKDISD 298 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGY-EGL-ESGHGFRHEFSTIMNEH------EWPAD 342 +VF R K K I + +K +G+ E L ++ H FR F TI H + P D Sbjct: 299 YVFMSRVIKCKHITAQGLNNRLKLLGFTEKLKQTAHSFRSTFRTIAQNHIDEIPIKNPRD 358 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 AIE L H G SV IYN A Y ++ + +WW++++ Sbjct: 359 AIESFLDHKIGNSVEMIYNRADYKKEKIAVAKWWSEFI 396 >UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0I233_HAES1 Length = 434 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 173/391 (44%), Gaps = 32/391 (8%) Query: 17 YRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 Y L DGNGL+L V +SG K+W+ Y K +++GKYP ++L +AR + Sbjct: 42 YPLRDGNGLFLSVEISGSKIWRFNYYKPYTKKRTEISIGKYPEISLLQARKIRDEYLALL 101 Query: 75 SVGIDPVKAKKASSNN-----NSFSAIYKEWYEHKKQVWSVGYATELAKM-----FDDDI 124 + IDP + N N+F + +WY +++ E + + I Sbjct: 102 AQNIDPKTHRDQKQNTQALERNTFKYVCAKWYA---EIYPTKAPNEDTRARNWQRLERHI 158 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPD 184 P + + + +I P L++V R GA +K R Y I G + + Sbjct: 159 FPKLAEIPLSEITPRLLIDVYREI---GASNTLDKLHRLVKATLDYGIKLGIIEGHNCNL 215 Query: 185 LADAMKGYRKKNFPFLPADQIP----AFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 D KN P + ++P A N A +L A + T LR KEL Sbjct: 216 AKDDFIAPLAKNHPAITPAELPELLKAINTAFKEGKLEFNTLFAFNLTLLTGLRQKELTR 275 Query: 241 MLWKNVDFENRIITIDASVMK-GRKI------HVVPMSDQVVELLTTLSSITKPVSEFVF 293 + W +D N+++ I + MK RK+ H++P+S Q+++L+ T+ S ++F Sbjct: 276 IEWAFIDDGNKLLIIPSENMKQTRKLREQPKDHIIPLSSQMIKLIGTIRQFNGS-SPYLF 334 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH--A 351 ++ K I + V ++ GY + HG R F + +++ + E+ +AH Sbjct: 335 PRVRNRNKTIGLDTVSNALRDNGYRDKQDAHGLRVVFRSYLSQIGFSVVVGELAIAHNST 394 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 G ++ IY+ YL++R++ Q W D+ ++ Sbjct: 395 GKGKIQAIYDRYDYLEERKQAYQAWGDYCEK 425 >UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UFB2_9BURK Length = 431 Score = 124 bits (310), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 103/396 (26%), Positives = 174/396 (43%), Gaps = 22/396 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKIL-TVGKYPLMTL 60 LT Q+ A +P+ Y + DGNGL + V +G KVW+ RY ++GK + L T+G Y +++L Sbjct: 36 LTESQVRALEPRAARYSVADGNGLVIEVMTTGTKVWRFRYSLNGKRQPLATIGDYRMISL 95 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVG----YATEL 116 + AR KA + ++ GI PV + + + + +E E G Y Sbjct: 96 RVARAKAQKYAELVAQGISPVATARRDRGAEAKADVLREAAELYMATEMAGKSDEYRRTT 155 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D D+LP IGGL ++ + ++ + + RG+ + A R ++ Y I Sbjct: 156 RRALDKDVLPAIGGLPVKSVTAQHVVAICDSIKSRGSPKMALHTRNVIKRLYEYLIARQL 215 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 A NPA + + L D+I A A+ T S IA +L T +R Sbjct: 216 ATANPAQVVPARSIATFESRTRVLSGDEIGATLHAIDTSSIRRPLKIALHLLVLTMVRKS 275 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 +L W+ D E I A+ +K +V + Q V LL L + + FVF Sbjct: 276 DLVESTWEEFDLEKASWRIPAARLKQDADQLVYLPQQAVTLLRELHR-ARAATRFVFPSV 334 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN-GGS 355 +PI ++ + +K + GL+ H H+F + H + HA S Sbjct: 335 RGDDRPIAKSTLNQAVKAL---GLDVEHFVLHDFRRTASVH------LREMARHAQEDKS 385 Query: 356 VRGIYNHAQYL------DKRREMMQWWADWLDEKVE 385 HA+++ + R++ Q WAD++D +++ Sbjct: 386 SAQTRQHARHVEAASAAAEARQIAQRWADFVDARLD 421 >UniRef50_C8T7N5 Phage integrase family site-specific recombinase (Fragment) n=11 Tax=Enterobacteriaceae RepID=C8T7N5_KLEPR Length = 188 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 109/187 (58%), Gaps = 5/187 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I KP +KP+++ D +GLYL V G + W L+Y+I+GKE + +G YP ++L Sbjct: 3 LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKE----WYEHKKQVWSVGYATELA 117 +AR + RK +++ I+PV+ + A + + ++K W++ ++ WS A L Sbjct: 63 DARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRK-WSQNTADRLL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ I P+IG L + +++P +++++R E++G +E A++ R+ + R+A+ G Sbjct: 122 ASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI 181 Query: 178 KYNPAPD 184 NPA + Sbjct: 182 DTNPAAN 188 >UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A1U0R6_MARAV Length = 432 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 105/388 (27%), Positives = 177/388 (45%), Gaps = 48/388 (12%) Query: 23 NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVK 82 +GL L + SG + W LR K+ + + +G YP ++L +ARDKA ++ I GIDP++ Sbjct: 38 SGLLLRITPSGSRQWILRAKVGNRRPDMGLGPYPEISLAQARDKAREMKEKIRSGIDPLE 97 Query: 83 AKKA--------SSNNNSFSAIYKEWYEHK-KQVWSVGYATELAKMFDDDILPIIGGLEI 133 K+ + +F +++ + K K+ + + + +P +G L + Sbjct: 98 EKRTLKRALLAEQISTLTFQKAMEKYIKMKAKEFRNPRQEKQWTNSLNTYAIPHLGKLPV 157 Query: 134 QDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPAPDLADAMKGY 192 ++I+ + +V+ + E AN+ R R + + + G R+ NPA +GY Sbjct: 158 REIDLPHIKQVLDPIWE-TKTETANRVRARIENILGWCAIHGYRSAENPA-----RWQGY 211 Query: 193 ------------RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL-- 238 ++ +F LP D +P F + L +G+ A + L TA RT E+ Sbjct: 212 LDEVYPSPEKIKKRGHFAALPVDDMPEFMRDLKKRTGTAAR--ALEFLILTASRTNEVIG 269 Query: 239 ------RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 + W+ +D ++ T+ A MK KIH VP++D +ELL + + + + Sbjct: 270 DKRIGKAGVTWQEIDLARKVWTVPADRMKSEKIHRVPLTDSAIELLKGMGEGSP--EDLI 327 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI-EVQLAHA 351 F G K I N L + + E + HGFR F E AD + E+ LAH Sbjct: 328 FPG---PKGGIPSNNFLTALLK-RMERPITAHGFRSTFKDWARERTAYADEVSELALAHV 383 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADW 379 N + R Y ++ +DKRR MM ADW Sbjct: 384 NSDATRAAYARSELIDKRRLMM---ADW 408 >UniRef50_A3UHH5 Site-specfic recombinase, phage integrase family protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UHH5_9RHOB Length = 330 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 161/336 (47%), Gaps = 22/336 (6%) Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNN-NSFSAIYKEWYEHKKQVW-SVGYATE 115 MTL EARD A R+ + GIDPV ++ S SF +E YE K W + Y Sbjct: 1 MTLTEARDAAAALRRQVRAGIDPVAERRKSRKVVPSFETAARECYEALKDGWKNQNYRNW 60 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR---RCGEVFRYAI 172 ++ M ++ + P+IG + ++ ++EV+ +E + AR+ R G V +A Sbjct: 61 ISSM-ENHVFPLIGRKPVDQVDSTHVVEVLTPI----WLEIPDTARKILQRIGAVLDFAH 115 Query: 173 VTGRAKYNPAPDLADAMKGYRKK-----NFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 + G + A L KG ++ +F +P +IPAF K LAT S + A + Sbjct: 116 IKGWREEEAA--LRSVRKGLPRQTDKVEHFKAMPYAEIPAFMKELATASPT-TGRDALRF 172 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 Y A+R+ E R +W +D + + TI MK ++ HVVP+S V +L + Sbjct: 173 TIYNAVRSSETRKAVWTEIDLDKAVWTIPGERMKAKETHVVPLSKAAVSILRRRWKLRTS 232 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEV 346 VF+ N+ + PI + + +++ G +G + HGFR F+ E ++P + + Sbjct: 233 DDGLVFS--NNGENPISDMTMTKLLRDAGIKGA-TVHGFRSAFTDWAAEKTDFPKEVADK 289 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH V Y + DKRRE+M WA +LDE Sbjct: 290 ALAHKLSNQVEAAYRRTDFFDKRRELMAVWAAFLDE 325 >UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas putida RepID=B0KFC6_PSEPG Length = 436 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 108/387 (27%), Positives = 178/387 (45%), Gaps = 31/387 (8%) Query: 21 DGNGLYLYVPVSGK------KVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 D GLYL V S K + W+L+Y++ GKE + +G+YP + L+EAR+ A AR + Sbjct: 45 DVPGLYLQVRASLKPGKSPSRHWRLKYRLRGKENVYVIGRYPDVGLKEARELARAARNSV 104 Query: 75 SVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPII 128 + IDP+KAKKA + +F+ + +EW + K + ILP I Sbjct: 105 ANHIDPLKAKKAKIEAQWLNEARTFAYVAEEWMKFKSADLVSKSVAGFRGALQNHILPAI 164 Query: 129 GGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADA 188 G + +I+ + +I + M A + R + +A G + N A + Sbjct: 165 GERPVSEIKLEHITAIITELRYKRIMAMARRVRTIIRSILGFAEGRGWVERNVALSNTEE 224 Query: 189 MKGYRKKNFPFLPADQIPA-FNKALATFS----GSIVSLIATKVLRYTALRTKELRSMLW 243 +K + PA + PA K L GS+ A ++L +R EL M W Sbjct: 225 LK--IRHVVTSNPAIERPADLGKFLLRLDDLNLGSVA--YAMRLLVLLPVRPGELVKMRW 280 Query: 244 KNVDF---ENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSS---ITKPVSEFVFAGRN 297 ++VD + R + + K H+VP+ +Q + LL L + + +VF Sbjct: 281 EDVDLIGADWRYVVSKTKHLDKSK-HIVPLPEQALVLLRELHKDRVVDDAGNGWVFGSPV 339 Query: 298 DKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI--EVQLAHANGGS 355 + I ++L ++++ E + HGFR + TI +EH D I E+ L+H G+ Sbjct: 340 YPGRSIDATSILKSLQKVWPEYAITAHGFRATYRTIAHEH-LGIDPIVLELSLSHRMPGA 398 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDE 382 + +Y AQ L +RRE Q WA++LD+ Sbjct: 399 LGAVYARAQLLSQRREAAQLWANYLDQ 425 >UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FSX1_PSYA2 Length = 444 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 113/398 (28%), Positives = 179/398 (44%), Gaps = 51/398 (12%) Query: 17 YRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 Y + GL LY+ + ++ R+ + GK K T+G YP+ TL++ARD + Sbjct: 62 YTIQGYKGLNLYIRDNKTTTFRHRFTSPVTGKRKNFTLGAYPVFTLEQARDMYRNNLSLL 121 Query: 75 SVGIDPVKAKKASSNNN----SFSAIYKEW---------YEHK---KQVWSVGYATELAK 118 + GIDPV + + N +FS + EW +EH+ ++ + YA Sbjct: 122 AGGIDPVFHHQDAHNKKRAMPTFSELADEWLQSQIASKQFEHRTIEQKRTHIAYAAAY-- 179 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 IG + I I+ +L I+ E + + A + R C +F AI G Sbjct: 180 ---------IGRMPIDHIKTPDVLRAIKDIEKK-TIPTAKRVRGVCQRIFALAIGQGYID 229 Query: 179 YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLI--ATKVLRYTAL--- 233 NPA +AD M K + I AF K L+ S+ A +L+ AL Sbjct: 230 NNPAIAVADLMLPKPKTEHHHAIIEPI-AFGKLLSDID-SVTDFYGHAQNILKLQALLFQ 287 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVELLTTLSSITKPVS 289 R ++ SM W +DF+ + T R VVP+ Q +E L L ++T + Sbjct: 288 RNGDMCSMRWDAIDFDAKTWTFSPQKTGNRGDMVASLVVPLPTQAIEHLRALHALTSK-T 346 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI-EVQL 348 +VF K+K + + + ++GY+ + + HGFR T+M E ++ + E+QL Sbjct: 347 PYVFYNSRRKEKFEHQQQLNKFLWRLGYKDVHTPHGFRASARTLMVEQLGISETLAELQL 406 Query: 349 AH----ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 H ANG + YN +DKRR+MMQ WAD+LD+ Sbjct: 407 GHNVRDANGRA----YNRVTMIDKRRDMMQRWADYLDQ 440 >UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepID=Q21D10_RHOPB Length = 429 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 112/399 (28%), Positives = 170/399 (42%), Gaps = 47/399 (11%) Query: 21 DGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP 80 DG GLYL + G K W RYK+ G+ +G + L+EAR+KA ARK G DP Sbjct: 24 DGGGLYLQIAEGGSKSWLFRYKLHGRTHWHGLGSLRDVGLEEAREKATGARKVRRNGGDP 83 Query: 81 VKAKK--------ASSNNNSFSAIYKEWYEHKKQVW-----------SVGYATELAKMFD 121 ++AK+ ++ +F K + + + W ++ + K Sbjct: 84 IQAKRQAEAAARIEAAKAITFGEAAKRFIKANRAGWKNAKHADQWVMTLLGVDQKGKPSK 143 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK-YN 180 +D I L I I+ +L +I E A + R R +V A G N Sbjct: 144 NDYCKTIRDLPIGAIDTTLVLRIIEPIW-ASKTETATRIRSRIEQVIDAAKAKGEFNGEN 202 Query: 181 PA------PDLADAMKGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 PA +L A RK +N P LP Q+P F + L G+ + + ++L TA+ Sbjct: 203 PARWKGHLDNLLPATSKVRKVRNHPALPYRQLPDFMRKLRERDGAAAAALEFQIL--TAV 260 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R + W +D + + TI A++MK H VP+S + +L + + TK SE++F Sbjct: 261 RPGNAVAAKWDQIDRQTSVWTIPAALMKSDAEHRVPLSKAALAVLDRMEA-TKDDSEYIF 319 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLES------------GHGFRHEFSTIMNEHEWPA 341 N K KP+ + ++ VI ++ LE HGFR F EH + Sbjct: 320 P--NTKGKPLSDASMAAVIDRMNE--LERRWIDPKLDREIVPHGFRSSFRDWAAEHGYDD 375 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 E LAH V Y +LD R MM+ WAD+ Sbjct: 376 PVAEAALAHKVSDEVVAAYRRTTFLDLRNRMMEDWADYC 414 >UniRef50_B5J7B6 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=B5J7B6_9RHOB Length = 446 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 108/400 (27%), Positives = 173/400 (43%), Gaps = 35/400 (8%) Query: 16 PYRLLDGNGLYLYVPV--SGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 P + DG GL L + V SG + W R I G+ + + +G P++TL AR+ A + Sbjct: 39 PGKYHDGGGLGLMLRVEPSGSRRWVQRIVISGRRREIGLGTPPVVTLAAAREAALDNMRT 98 Query: 74 ISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGGLE 132 + G DPV ++ + +F+ + K + S + + D LPI+G L Sbjct: 99 VQAGNDPVAIRRNARTFLTFATAAEHAIAAKSSEFRSDKHRKQWRSTLDTYALPILGALP 158 Query: 133 IQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG--------RAKYNPAPD 184 + + +L V+ E A++ R R + +A G R K N + Sbjct: 159 VGKVNTADVLRVLEPIWTE-KTETASRLRGRIEAILSWATAAGHREGENAARWKGNLSEM 217 Query: 185 LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWK 244 L + + + P L + + + AL G V+ A + L TA R+ E+R M W Sbjct: 218 LPKPQRVAKTVHHPALASSDVSVWYAALRGRDG--VAARALEFLALTAARSGEVRGMTWA 275 Query: 245 NVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKP-- 302 VD + T+ A MK + H VP+S LL +++ P ++ GR P Sbjct: 276 EVDLTTGVWTVPADRMKASREHRVPLSAPAFSLLESMA--VAPDADPTDCGRPVFSAPRG 333 Query: 303 -----ICENAVLLVIKQ----IGYEGL---ESG-----HGFRHEFSTIMNEHEWPADAIE 345 + +AV+ ++Q +G G SG HG R F E +P D E Sbjct: 334 GVLSDMSLSAVMRRMQQAEIDVGCAGWLDRASGRPAVPHGLRSTFRDWTAECGYPRDMAE 393 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + LAH G +V Y + L++RR MM W+D+LD +VE Sbjct: 394 MALAHDVGSAVERAYRRSDMLERRRAMMAAWSDFLDGRVE 433 >UniRef50_Q9RM38 Integrase (Fragment) n=56 Tax=Enterobacteriaceae RepID=Q9RM38_ECOLX Length = 304 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 131/245 (53%), Gaps = 18/245 (7%) Query: 154 MERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALA 213 +E A++ R+ + R+A+ NPA +L ++++P LP +++P + + Sbjct: 42 LEVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIG 101 Query: 214 TF-SGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASV------------M 260 + G ++ A ++ + +R+ ELR W +DF NR+ TI A+ Sbjct: 102 AYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGA 161 Query: 261 KGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL 320 K R H+VP+S+Q + +L + IT +E +F G ++ KP+CEN V ++ +GY+ Sbjct: 162 KMRMPHIVPLSEQSIAILKQIKDITG-NNELIFPGDHNPYKPMCENTVNKALRVMGYDTK 220 Query: 321 E--SGHGFR-HEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWW 376 + GHGFR S +M W DA+E Q++H +VR Y H A++L+ R+ MMQWW Sbjct: 221 KDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWW 280 Query: 377 ADWLD 381 +D+L+ Sbjct: 281 SDYLE 285 >UniRef50_A0Q4W3 Phage integrase n=4 Tax=Francisella RepID=A0Q4W3_FRATN Length = 398 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 100/381 (26%), Positives = 179/381 (46%), Gaps = 27/381 (7%) Query: 20 LDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGID 79 LD N LYL + + K + RY GK + + +G YP +T ++AR++A T GID Sbjct: 20 LDTN-LYLVIKPTNTKSFMYRYYFKGKAQSMGLGGYPTITYKKAREEARTLNIAKEQGID 78 Query: 80 P--VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIE 137 P +A + + F I +W+ KK + K DI+P + + I+ Sbjct: 79 PKVYRANQTIDQDKLFENIANDWFSKKKSELRKVTLSGYEKALQSDIIP---HFKDKSID 135 Query: 138 PMQLLEVIRRFEDRGAMERANKARRRC--GEVFRYAIVTGRAKYNPAPD-----LADAMK 190 ++L E+ + + A + + + ++ YA + ++N + LA Sbjct: 136 TIKLREIAIFLQRHCSNSNAKQMKYKAILSGIYNYATLLNLCEHNLMLNDFKHILAPKTN 195 Query: 191 GYRKKNFPFLPADQIPAFNKALATFSGSIVSL-IATKVLRYTALRTKELRSMLWKNVDFE 249 G+ P L +D + + + + I + A ++ A R L + W + Sbjct: 196 GHYAFINPILDSDNLSLLLQKIDSLDAGIAATKTALQIAPLLAFRPTLLTILRWSYYKPK 255 Query: 250 NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVL 309 I+ I A MK + + P+S Q EL+ ++ K S+++F N K KPI N + Sbjct: 256 EAILVIPAKKMKANQDFIQPLSRQAQELIDSMRPYKK--SDYIFT--NKKGKPIDPNRLR 311 Query: 310 LVIKQ-IGYEG----LESGHGFRHEFSTIM----NEHEWPADAIEVQLAHANGGSVRGIY 360 +I+Q +G++G ++ HGFRH ST++ E++W +A+E+ L H ++ IY Sbjct: 312 NLIQQDLGFDGKTLPRQTMHGFRHIVSTLLYSLQREYKWQTEALELILDHRKRNQIQAIY 371 Query: 361 NHAQYLDKRREMMQWWADWLD 381 N QY+++RRE++Q AD+ D Sbjct: 372 NTYQYIEERREILQTLADYFD 392 >UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas intermedia K12 RepID=C7I5J5_THIIN Length = 401 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 164/373 (43%), Gaps = 23/373 (6%) Query: 22 GNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPV 81 GLYL V G +W RY + GK ++G +TL +A KA R I G D Sbjct: 24 ATGLYLRV-RGGSALWTFRYMVAGKASEQSLGPISALTLADALAKAAEVRAKIRRGEDFA 82 Query: 82 KAKKAS---SNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGGLEIQDIE 137 A+ + +++F + + +E K W + +A + P G + +I Sbjct: 83 LRPSATVVPTPSDTFEEVALQLWESMKPGWKNPKHADQWINTLRMYAFPRFGRKAVSEIG 142 Query: 138 PMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPAP-------DLADAM 189 ++L + + E A + R+R V A G RA NPA L Sbjct: 143 TEEVLAALTPIW-QTKHETATRLRQRIEAVLSAAKARGLRAGENPAAWRGHLNALLPTIS 201 Query: 190 KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFE 249 K R K+F + ++PAF L + +S A + TALRT + W +D E Sbjct: 202 KKRRVKHFEAMDWREVPAFMAQLRQRAN--MSAWALQFTILTALRTGTVIGTPWSEIDLE 259 Query: 250 NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVL 309 R+ I A MK + H VP+S Q VELL L + S++VF G +KP N + Sbjct: 260 RRLWVIPAERMKAQVEHRVPLSRQAVELLQALPR--QEGSDWVFWG---ARKPTISNMAM 314 Query: 310 LVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNHAQYLDK 368 L + + GL + HGFR FS E +P+ +E+ LAH V Y ++K Sbjct: 315 LELLRGMRPGL-TVHGFRSSFSDWAAESTHFPSQTVEMALAHMITNQVEAAYRRGDLIEK 373 Query: 369 RREMMQWWADWLD 381 RRE+MQ W D+LD Sbjct: 374 RRELMQAWGDYLD 386 >UniRef50_C7I2C4 Putative integrase n=1 Tax=Thiomonas intermedia K12 RepID=C7I2C4_THIIN Length = 229 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 104/186 (55%), Gaps = 6/186 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AKP K +L D GLYL + G K+W+L+Y GKEK L+ G YP ++L+ Sbjct: 3 LTDTTIRNAKPGAKSIKLFDERGLYLEITPPGGKLWRLKYSFGGKEKRLSFGAYPDVSLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYATE 115 AR+K AR+ ++ GIDP +A+KA+ +SF AI EW + S + T Sbjct: 63 AAREKRDDARRMLADGIDPSEARKAAKARALQMAEDSFEAIAMEWAKRHLAARSESHRTR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + ++ P +G I I +L V+R+ E RG ++ A++ ++ G V RYA+ TG Sbjct: 123 VIRRLEREVFPFLGKKPIASITAPDILAVLRKIETRGVLDTAHRTQQTIGTVIRYAVATG 182 Query: 176 RAKYNP 181 RA+ P Sbjct: 183 RAEDRP 188 >UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurellaceae RepID=A6VNS1_ACTSZ Length = 427 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 111/419 (26%), Positives = 186/419 (44%), Gaps = 51/419 (12%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L+ QI AAKPK+K Y L DG GL L + +G K W Y K T+G+YP ++ Sbjct: 8 LSAAQINAAKPKDKIYYLSDGLGLRLAIKPNGTKTWLFNYTKPYIKKRTDKTIGQYPSVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQV------ 107 L +AR KA R+ ++ IDP + + +N+FS + EW +++++ Sbjct: 68 LADARAKAHEFRELLAKNIDPHQNEIEKEKQERLPMSNTFSHVANEWLVYREKIGMERKD 127 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 +S T+ + +D I I+G ++++ L ++ RG K + Sbjct: 128 YSEKTKTDTIRRVNDAI-EILGDTSFKELKLQHGLALLDAHRTRGQYTEMKKRLFVLKSI 186 Query: 168 FRYAIVTGRAKYN---------PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGS 218 YA G N P+PD + K+F + ++P F L + Sbjct: 187 AEYAERFGYWDRNEWRYLGEDLPSPD--------KNKHFAAIHYKELPEFLFELRKANIH 238 Query: 219 IVSLIATKVLRYTALRTKELRSMLWKNVDFENR------IITIDASVM-KGRKIHVVPMS 271 SL+A R E + ++ EN ++T+ + KG + H++P+S Sbjct: 239 YSSLLAILWGLLNVTRASETVGAKFSDIS-ENENLPGELVLTVQVNKGGKGARDHLIPLS 297 Query: 272 DQVVELLTTLSSITKPVSEFVFA-----GRNDKKKPICENAVLLVIKQIGYEGLESGHGF 326 Q +LLT + S+++F GR P N V+ + Y+G+ + HG Sbjct: 298 RQAGKLLTFIRK--NSTSDYLFPAAYKRGRLVHINPQTPNDVIKSMGAGKYKGIMTNHGM 355 Query: 327 RHEFSTIMNEHEWP----ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 R FS+ N++ + IE+ L+H NG VR YN A+YL R + +Q WAD+++ Sbjct: 356 RTLFSSYCNDNRLELGLDPEIIEICLSHLNGDKVRNAYNRAEYLPYRLKTLQAWADYVE 414 >UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JWM6_PASHA Length = 404 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/391 (26%), Positives = 175/391 (44%), Gaps = 30/391 (7%) Query: 12 PKEKPYRLLDGNGLYLYVPVSGKKVWQLRY---KIDGKEKILTVGKYPLMTLQEARDKAW 68 P KP + D NGL++ K VW Y K + +G YP M+L EAR K Sbjct: 20 PNAKP--IADSNGLFILAQKKAK-VWIYSYISPKTGKRSTKNRIGSYPQMSLAEARLKRD 76 Query: 69 TARKDISVGIDPVK--------AKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 + G+DP + AK+ + SF+ + +W K + L ++ Sbjct: 77 ELNTLVLQGLDPFEHLAKMQREAKEKQESIQSFAYKWADWKLSKGKCKPKTMEKCLQRL- 135 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFED--RGAMERANKARRRCGEVFRYAIVTGRAK 178 ++ + P G ++D L + I R D R + ++ E+ YA++ GR Sbjct: 136 ENHLFPRFEGYTLEDF---TLTDTINRLTDLDRIMPDTLHRIAGNLIEILDYAVLCGRIN 192 Query: 179 YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL--ATFSGSIVSLIATKVLRYTALRTK 236 +NP + A + P + +++ F + L + + I L+ ++L LR Sbjct: 193 FNPISVIKKAFSSVSTTHQPAIMPEELAEFMQDLQKSNRTPQIKLLVEWQLL--NILRPF 250 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRK-IHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 E ++ W ++D+E + + I A MKG K H VP++ Q + +L + + +F Sbjct: 251 EAVAVQWSDIDWETKTLNIPADRMKGGKNPHSVPLTKQAIAILEEMKKYNGH-HKHIFTH 309 Query: 296 RNDKKKPICENAVLLVIKQIG---YEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHA 351 R D+ KP V IK++ Y+GL HG R ST ++E IE L+H Sbjct: 310 RTDRNKPANSQTVNNAIKRLSGGKYKGLLVAHGLRSIASTYLHERFTTETLVIEACLSHT 369 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 N +V Y+ +LD+RR +MQ WAD++++ Sbjct: 370 NKDTVMSAYHRKNWLDRRRGIMQEWADFVEQ 400 >UniRef50_A5WEP7 Phage integrase family protein n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WEP7_PSYWF Length = 421 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 110/395 (27%), Positives = 182/395 (46%), Gaps = 43/395 (10%) Query: 24 GLYLYVPVSGKKVWQLRY---KIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP 80 GL + + +GKK + LRY K +T+G ++L EA+ KA + + G DP Sbjct: 28 GLSVRIYPNGKKEYYLRYPHPHQPNKRPRMTLGSVEDISLHEAKTKAESILDMVRNGTDP 87 Query: 81 --VKAKK-----ASSNNNSFSAIYKEWYEHK------KQVWSVGYATELAKMFD---DDI 124 ++ +K A N +F+ I W ++K ++ ++ K +D + Sbjct: 88 KAIRQQKQVNKYAHLTNATFAEIAAAWRDNKINSRRQRKTGKRTFSESTLKFWDLCLGYM 147 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFE--DRGAMERANKARRRCGEVFRYAIVTGRAKYNPA 182 IG L + DI +L V + D A R +VF +A+ G N A Sbjct: 148 CAEIGNLRMNDITSETILNVCESIQNNDNEAAFVGASTRLYTEKVFSFAVARGLCDTNVA 207 Query: 183 ----PDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSG-SIVSLIATKVLRYTALRTK 236 +LA A G K+ P L D+ A K +ATF+ S ++L+A +L Y +R+ Sbjct: 208 IYTRGELAPAGSG---KHLPALTKPDEFAALLKDMATFTAASELTLMAMNLLPYVFVRSI 264 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHV----VPMSDQVVELLTTLSSIT--KPVSE 290 +LRSM W +D+ +++ + +GR+ V VP++DQV+ L + IT KP Sbjct: 265 DLRSMRWDEIDWTHKLWVFSPTKGEGREDMVSSLVVPLADQVITRLRDIQKITGDKP--- 321 Query: 291 FVFAG-RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH---EWPADAIEV 346 +VFA R+ + + ++ ++GY+G HGFR T++ E + E+ Sbjct: 322 YVFASIRSSSNAYMSKATLVQAFHRLGYKGKHCTHGFRAAAKTLLMEQPELRYSDIVTEL 381 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 QL H + G YN + R +MMQ WAD++D Sbjct: 382 QLGHRIKDTHGGAYNRLDEISTRTQMMQHWADYID 416 >UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=C7JAN4_ACEP3 Length = 404 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 171/404 (42%), Gaps = 44/404 (10%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT +Q+ A K L DG GL+L V K W R+ I + + +G ++ Sbjct: 9 LTARQVSALKGGS----LCDGGGLWL-VAQGAAKSWFFRFTSPISNTRREMGLGSVHDLS 63 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVW-SVGY 112 L E R KA AR ++ G+DP+ KA++ + +FS I K + + W + Sbjct: 64 LAEVRRKATEARHLVAAGLDPIDERRKLKAQRKKESGLTFSDIAKRYVKEMAPGWRNARS 123 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 +T + + P +GG + +IE +L V+R + E A++ R R + +A Sbjct: 124 STVWTSSLERHVFPAMGGKLVSEIETEDVLAVLRPIW-KTTTETADRVRGRIERILDFAR 182 Query: 173 VTG-RAKYNPAPDLADAMKGYRKKNFP----FLPADQIPAFNKA--------LATFSGSI 219 G R NPA +G+ P A +PA N+ LA G Sbjct: 183 THGWRDGENPA-----RWRGHLANILPKPSAVAKARHLPAVNRKDIGKVMAKLAQAEG-- 235 Query: 220 VSLIATKVLRY---TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVE 276 I+ K +R+ TA R+ E+R +W +D +I TI A MK K H VP+S + Sbjct: 236 ---ISPKAVRFACLTAARSGEVRQAVWSEIDLVTKIWTIPAHKMKAGKEHRVPLSAGAIA 292 Query: 277 LLT-TLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFST-IM 334 +L L K + VF G + +P+ + + + + HG R F Sbjct: 293 VLQEVLPFRDKRAGDLVFPG-GKRGRPLSDVVLSKALHSAAGTKDVTVHGLRSTFRDWAA 351 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD 378 E ++P + E+ LAH V Y +KRREMM W D Sbjct: 352 EETDYPGEVAEMALAHTISDKVEAAYRRGDLFNKRREMMTAWND 395 >UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria RepID=B4SNF6_STRM5 Length = 397 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 106/378 (28%), Positives = 170/378 (44%), Gaps = 26/378 (6%) Query: 21 DGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP 80 DG GLYL V S K W RY+ +GK + +G ++ L EAR+ A ARK + G DP Sbjct: 24 DGGGLYLQVTASCAKSWVFRYRFEGKRPEMGLGPLHVIGLAEAREAAGAARKMVQSGQDP 83 Query: 81 VKAKKASSNNNSFSAIYKE----WYEHKKQVWS-VGYATELAKMFDDDILPIIGGLEIQD 135 + ++A++ + + E + ++ W+ +A + + + P++G L + Sbjct: 84 LAGRRAAAVATASIPTFWEAATAYIAEREAGWTNPKHAGQWTRTLETYAKPVLGDLRVDR 143 Query: 136 IEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT-GRAKYNPAP-------DLAD 187 IE +L V+R E A++ R+R V V R+ NPA L Sbjct: 144 IETEHVLAVLRPIWTT-KTETASRVRQRMEAVLDAVTVQKKRSGENPARWRGHLAVILPK 202 Query: 188 AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVD 247 + +NF LP ++P+F AL + G + +L TA RT VD Sbjct: 203 PTAVTKVENFAALPYAELPSFMAALRSRHGEAARALEFTIL--TAARTGMTLGATPGEVD 260 Query: 248 FENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND-KKKPICEN 306 T+ S MK + H VP+S + L +P + ND +P+ EN Sbjct: 261 LAAGTWTVPGSRMKAKVEHTVPLSTPALAL-------ARPRIKRDLLFPNDLSNEPLSEN 313 Query: 307 AVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQY 365 A+L ++K++GY G + HGFR F +E ++P D E LAH + Y Sbjct: 314 AMLALLKRMGY-GYITVHGFRSTFKDWASEMTDYPDDLSEAALAHRIRDKAKAAYKRGTM 372 Query: 366 LDKRREMMQWWADWLDEK 383 + KRRE+M WA++ ++ Sbjct: 373 IQKRRELMNSWAEYCAQE 390 >UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella silvestris BL2 RepID=B8ERI0_METSB Length = 400 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 106/417 (25%), Positives = 181/417 (43%), Gaps = 66/417 (15%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT+K I A KP+ K + DG+ GLY V SG K W R+ +GK K LT+G YP + Sbjct: 5 LTIKGIAALKPQAKRCEVPDGHTRGLYFVVQPSGAKSWAYRFSFEGKPKKLTIGSYPAID 64 Query: 60 LQEARDKAWTARKDISVGIDPV--------KAKKASSNNNSFSAIYKEWYEHKKQVWSVG 111 L AR A + ++ G +P KA+K S + + + +H + Sbjct: 65 LSRARSIALASATKVANGRNPAAEKKVEREKARKPSDLDLVDVVVAQFVVKHVEPKTRPQ 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 A E+ ++ +IL G + +I + +++ DR + AN+ + ++ Sbjct: 125 SAKEMKRILKREILSRWSGRRLTEITRSDIRDLLEAIADRAPI-MANRVFEVISSLINWS 183 Query: 172 I---------VTGRAKYNPA---------PDLADAMKGYRKKNFPFLPADQIPAFNKALA 213 I + G K +PA +L D + + +P+ Sbjct: 184 ISMEMLSASPIAGLRKPSPAKRRDRILSEKELTDVWQASERAGWPY-------------- 229 Query: 214 TFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQ 273 GS++ KVL + R E+ M W +DFE R T+ A K K H++P+S Sbjct: 230 ---GSMI-----KVLILSGQRRSEVSDMTWSEIDFEERSWTLPAVRTKNGKGHIIPLSPT 281 Query: 274 VVELLTTLSSITKPVSEFVFAG------RNDKKKPICENAVLLVIKQIGYEGLESGHGFR 327 ++++L TL I S FVF RN ++ + A+++ + E + H R Sbjct: 282 IIDVLLTLPRIGSE-SGFVFTTNGFSPIRNFARR---KKALMMSCQS---ENNWTLHDLR 334 Query: 328 HEFSTIMNEHEWPADAIEVQLAHANG--GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 F+T M + +E L H++G G V+G+Y + ++RE M WA ++++ Sbjct: 335 RTFATGMARLKVELPVVEKLLNHSSGTFGGVQGVYQQYDFQSEKREAMNLWASYVNK 391 >UniRef50_C1TKN0 Putative uncharacterized protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKN0_9BACT Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 16/256 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGK--EKILTVGKYPLM 58 ML+ QI KP+E Y +LD +GLY+ + +GKK W++R + G E ++G YP + Sbjct: 1 MLSDTQIRKLKPQETRYSMLDSDGLYIEILPTGKKYWRIRKRKPGGNGEIRRSIGAYPKI 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKK-QVWSVGYATELA 117 L+EAR K R ++ + + KK N N+F+ + EW E K + Y L Sbjct: 61 GLKEARQK----RDELVSTLPELGGKK---NVNTFAELAHEWLEVKMYPTKAPRYIETLV 113 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 D ++P IG ++ + +LL+V+R+ E RG +E A + R+ CG++ RY + TGR Sbjct: 114 YKIDKLLIPHIGHRQVDTLTAPELLDVLRKIESRGTIETARRTRQMCGQILRYGVATGRC 173 Query: 178 KYNPAPDLADAMKGYRKKNFPFL--PADQIPAFNKALAT-FSGSIVSLIATKVLRYTALR 234 + + DL A++ R K+ L PA QI +++ G I + + YT R Sbjct: 174 DRDISADLKGALQTVRHKHMATLIDPA-QIGGLMRSIEEGLKGQIRLTLLFQA--YTFAR 230 Query: 235 TKELRSMLWKNVDFEN 250 E+R W+ ++ + Sbjct: 231 PGEIRKAEWEEIEADT 246 >UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDX8_ERYLH Length = 396 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 163/380 (42%), Gaps = 15/380 (3%) Query: 10 AKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWT 69 AK ++ R DGNGL L V SG K W LR + DGK + + +G + EAR+KA Sbjct: 20 AKAIKEAGRYSDGNGLQLVVKASGAKSWILRVQHDGKRRDIGLGPLSEVGPAEAREKAVE 79 Query: 70 ARKDISVGIDPVKAKKASSNNNSFSAIYKE----WYEHKKQVW-SVGYATELAKMFDDDI 124 ARK I G DP K S + ++E +++ K W + + + D Sbjct: 80 ARKVIRGGGDPSGLKSGSGRISGRPPTFRELATSYHDDHKSSWKNAKHREQWLSTLDTYA 139 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN-PAP 183 PI G + ++ +L+ ++ + E A + +R V YA G ++ P Sbjct: 140 FPIFGDQPVDRVDSRDVLDCLKPIWN-AKPETARRVLQRVLRVLNYAHGMGHREHEAPTQ 198 Query: 184 DLADAMKGYRK--KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSM 241 + A+ R ++ LP ++P L SG V +A + TA R+ E+R Sbjct: 199 SIRAALGKQRSQVRHHASLPYAEMPELMAKLEAASG--VGAMALRFAILTAARSGEVRGA 256 Query: 242 LWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKK 301 W +D + T+ A MK R+ H VP+S + +L + K FVF + + Sbjct: 257 QWNEMDLAKKTWTVPAERMKARRAHAVPLSPAALAILEDAKGLRKKPEGFVFP--SSRGI 314 Query: 302 PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIY 360 + + +L I+ + + HG R F E PA A E LAH Y Sbjct: 315 ALSDMTLLKAIRAASDQNT-TVHGCRTSFRVWAAEKTSCPAAAAEAALAHTIHNKAEAAY 373 Query: 361 NHAQYLDKRREMMQWWADWL 380 + YLD RR++M W +L Sbjct: 374 HRTDYLDIRRQLMADWGAFL 393 >UniRef50_D2M358 Integrase family protein n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2M358_RHOPA Length = 456 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 114/430 (26%), Positives = 186/430 (43%), Gaps = 58/430 (13%) Query: 7 IEAAKPKE-----KPYRLLDGNGLYLYVPVS---------GKKVWQLRYKIDGKEKILTV 52 AA+PK P ++ D G +LY+ V+ K+W++ Y+ G++K ++ Sbjct: 21 CRAARPKFDNGAWSPAKISDVTGGWLYLFVTPDVSRPGNAASKLWRMDYRFHGRQKTYSI 80 Query: 53 GKYP-----LMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEH---K 104 G Y +L +AR + A+ + G DP K+ + + + + +W + K Sbjct: 81 GPYGNGRDGTFSLADARRERDKAKDLLKEGKDPSIEKQLDKHKQAAARPFAQWADEWLAK 140 Query: 105 KQVWSVGYATELAKMFDDDILPII-----------GGLEIQDIEPMQLLEVIRRFEDRGA 153 K+V V +A + D + ++ G L QDI+ +L +R +E G Sbjct: 141 KKVEKVKRGRIVA-VRDPKTVEVLELRVGYVKARFGKLCRQDIKRPDVLAFMRSYEAEGR 199 Query: 154 MERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFL--PADQIPAFNKA 211 +E ++ R ++ YA V G YNP +L M P + P D F Sbjct: 200 LETRDRVRSIGEQICDYADVEGDG-YNPFRNLNGQMIANISTPRPGVTEPRDVTRVFKLI 258 Query: 212 LATFSGSIVSLIATKVLRYTAL---RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVV 268 A ++ + + LR+ AL R + M W VD++ + T+ A MK HVV Sbjct: 259 SAPWTRARFGDVVGLALRFNALTIPRPGMVNEMEWGEVDWDAKRWTVPAPKMKTGWDHVV 318 Query: 269 PMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL--ESGHGF 326 P+S Q L L S+ K +A K P+ N + ++ +G + HGF Sbjct: 319 PLSRQA---LAILRSVQKLTGHRRYAFSCSKDAPLSNNTLNKRLRLLGIDTKTDHCAHGF 375 Query: 327 RHEFSTIMNEHE------WPADAIEVQLAHANGGSVRGIY-NHA--QYLDKRREMMQWWA 377 R FST+ + E W D +E+QLAH + +V G+Y H + R ++MQ WA Sbjct: 376 RTTFSTLSHHEEIKDAKAWDGDVVELQLAHLDNSTVEGLYKKHGPLALIGSRTKLMQHWA 435 Query: 378 D----WLDEK 383 D WLD K Sbjct: 436 DRIDHWLDPK 445 >UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QAC1_PSYCK Length = 448 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 112/406 (27%), Positives = 183/406 (45%), Gaps = 37/406 (9%) Query: 5 KQIEAAKPKEKPYRLLDGNG--LYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMTL 60 + I + KP++K Y + N L+L V + K W RY + K+ I+++G YP ++ Sbjct: 10 RSISSHKPEDKKYFVAVKNHPKLFLMVRPTETKSWMYRYYPPSNPKQSIISIGIYPSISY 69 Query: 61 QEARDKAWTARKDI-SVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 A + W +D+ S GIDP +K S NSF+ E+++ +Q G Sbjct: 70 ARACE-VWREYEDLLSKGIDPKIHREDIKKSFISKTKNSFNHFAWEYFDTLEQSQK-GNT 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFE------DRGAMERANKARRRCGEV 167 K + I IG I +I ++LEV+ + D ++A + +V Sbjct: 128 LIRKKGRLELICSYIGNEPISEIGSPRMLEVLLDIQAKSLNKDDKPTDKAERCAGIASDV 187 Query: 168 FRYAIVTGRAKYNPA----PDLADAMKGYRKKNFPFL--PADQIPAFNKALATFSGSIVS 221 F YA G NPA LA + G+R P + P D + +A+ T G + Sbjct: 188 FVYANARGFCSSNPAALIKSQLAKSSYGHR----PAVTKPKD-LAKLLRAIETIEGDPNT 242 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVEL 277 + + ++L +R +LR M W ++D E + +G+ K VVP+ Q V + Sbjct: 243 INSLRLLALLFVRNGDLRRMCWIDLDLEAGRWRLKPLKGQGKVNMVKDMVVPLPRQAVAI 302 Query: 278 LTTLSSITKPVSEFVFAGRNDKKKPICENAVL-LVIKQIGYEGLESGHGFRHEFSTIMNE 336 L I +++VF + KK I +A +K +GY+ + HGFR TI+ E Sbjct: 303 LREQQKINGH-TKYVFFSQTAKKHQIISDATANKRLKDLGYKDIHCAHGFRATAKTILQE 361 Query: 337 H-EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 ++P +E+ L H Y +Y+D R +MMQ WAD+LD Sbjct: 362 QLKYPLVLVEMALGHTTKDPNGTAYGRFEYIDDRSDMMQKWADYLD 407 >UniRef50_UPI00019779C7 integrase n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019779C7 Length = 379 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 92/377 (24%), Positives = 165/377 (43%), Gaps = 35/377 (9%) Query: 39 LRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPV------KAKKASSNNNS 92 +RY K K++T+G+YP ++L++ R+ A +K I DP KA K Sbjct: 1 MRYSFGDKRKLITIGQYPSVSLEQTRENAIGYKKLILAEADPQENKKLDKAAKIKMKEGQ 60 Query: 93 FSAIYKEWYEHKKQVWSVGYATELAKMFDDDILP----------IIGGLEIQDIEPMQLL 142 + + W + K++ + +M + +LP I+ I+DI + Sbjct: 61 LHLVVEAWLKFKEKQVTYSTLKRDRRMMEQHLLPNFSKYESDRKIVSSTHIEDIAHSDIT 120 Query: 143 EVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPA 202 +I + +D +E A + C ++++A+ G + N + K + Sbjct: 121 HIIAKIQDY-RVELARRLFAHCLSIWQFALGRGYTETNYLFKIDTKQLLLPKVTNHYEKI 179 Query: 203 DQIPAFNKALATFSGSIVSLIATKVLRYTA---LRTKELRSMLWKNVDFENRIITIDASV 259 + L G I S I L++ + LR + L ++ W +DFE +I+TI S Sbjct: 180 TDEATLGELLRAIDGYIHSSIIRSALKFVSIIPLRAENLATLKWSYIDFEKKILTIPRSE 239 Query: 260 MKGRKIHV----VPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQI 315 MK +K +P+ Q +E+L + T ++F G N KP+ + ++ + Sbjct: 240 MKVKKKSFPDFSLPLPTQAIEILKEIKKNT-GWGVWIFHGHNKIHKPMVSESANKALRSM 298 Query: 316 GYEGLESG-----HGFRHEFSTIMNEHEWPADAI----EVQLAHANGGSVRGIYNH-AQY 365 G+ + G H FR F ++ + H+ +A E L H G +V Y H A Y Sbjct: 299 GFADAKRGRKQTLHSFRGTFRSLCDTHQDKHNASFEIKEAVLDHRIGNNVTQAYLHKAYY 358 Query: 366 LDKRREMMQWWADWLDE 382 +++ R ++QWWAD+LDE Sbjct: 359 VEQMRPLLQWWADYLDE 375 >UniRef50_B8J346 Putative phage integrase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J346_DESDA Length = 208 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 108/207 (52%), Gaps = 27/207 (13%) Query: 2 LTVKQIEAAKPK-------EKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGK 54 LT+K+IEAAKPK + P +L D NGL L+V S K+W+ RY GKE+ LT+GK Sbjct: 3 LTIKEIEAAKPKTNKKTGKQAPVKLSDENGLMLFV-TSQNKIWRARYFYMGKEQNLTLGK 61 Query: 55 YPLMTLQEARDKAWTARKDISVGIDPVKAKKA------------------SSNNNSFSAI 96 YPLM+L+EAR+ + R+ + G +P KAKKA S+ +SF AI Sbjct: 62 YPLMSLKEAREANFALRQQLDRGENPAKAKKAKQEEQLAVFAEERRIARGESHPDSFGAI 121 Query: 97 YKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLE-VIRRFEDRGAME 155 ++W K+ W AK ++ +G L I+D++ + + + +R ED G Sbjct: 122 AEDWLSDVKKGWKRRTCVAEAKRVRKHLIEPLGHLLIKDVKANEHIRPLFQRLEDAGKYT 181 Query: 156 RANKARRRCGEVFRYAIVTGRAKYNPA 182 K + +F +AI G+ + NPA Sbjct: 182 TLKKIAEKTVSIFNFAIALGKTENNPA 208 >UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobacteriaceae RepID=B7UT12_ECO27 Length = 411 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 109/352 (30%), Positives = 157/352 (44%), Gaps = 34/352 (9%) Query: 50 LTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKA--------SSNNNSFSAIYKEWY 101 + +G YP ++L EARDKA RK I GI+P++ K + +F+ +E Sbjct: 67 MGLGPYPEVSLAEARDKARELRKQIRNGINPLQEKHEQKARQEILARKKKTFAECCEEVL 126 Query: 102 EHK-KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKA 160 E K ++ + + + + P IG + +I + LL ++ E A++ Sbjct: 127 EVKDSEMKNKKHLAQWRSTLETYAYPFIGKKAVSEITKVDLLAILEPIW-LTKNETASRL 185 Query: 161 RRRCGEVFRYAIVTGRAKY-----NPA-------PDLADAMKGYRKKNFPFLPADQIPAF 208 R R V YA +AK NPA P L K K+ LP +QI +F Sbjct: 186 RGRIETVIDYA----KAKEYFEGDNPAAWKGMLKPLLPQPSKVQITKHHAALPYNQIGSF 241 Query: 209 NKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVV 268 K L SG VS A + TA R+ E+R W +D E + TI AS MK K H V Sbjct: 242 MKELRERSG--VSPRALEFAILTAARSGEIRGAEWSEIDLEGKTWTIPASRMKAAKEHRV 299 Query: 269 PMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRH 328 P+SD V LL L K +S FVF +K + + A+L V+K++GY L + HGFR Sbjct: 300 PLSDAAVALLKALPRF-KGIS-FVFPA--TRKGQLSDTALLAVLKRMGYTDL-TQHGFRS 354 Query: 329 EFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADW 379 F E +P + IE LAH Y KR +M W+ + Sbjct: 355 TFRDWAGETTNYPREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDEWSGF 406 >UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepID=B7UP04_ECO27 Length = 405 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 107/401 (26%), Positives = 175/401 (43%), Gaps = 31/401 (7%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLY-VPVSGKKVWQLRY--KIDGKEKILTVGKYPL 57 +LT + KP +KP GL L+ V G+ W RY + K + +G YP Sbjct: 3 VLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPE 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNN---NSFSAIYKEWYEHKKQVW-SVGYA 113 +++ EA A R+ ++ G DP++ KKA S +F+ + + W + + Sbjct: 63 VSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPKHV 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + ++ P +G + I + E +R E A++ ++R V ++ Sbjct: 123 RQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVW-LTLSETASRVKQRIHVVMQWGWA 181 Query: 174 TGRAKYNPAPDLADAM-----KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 G NP D+ D + +G R ++ P +P Q+P F A + ++ ++ +L Sbjct: 182 HGFCVANPV-DVVDHLLPQKTRG-RDEHQPAMPWRQLPLF-VATSVYTDEPYNVTRALLL 238 Query: 229 R--YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA R+ E R M W +DF RI TI A MK R H VP+S Q + +L + + Sbjct: 239 MVILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAMHILENIRGLH- 297 Query: 287 PVSEFVFAGRNDKKKPICENAVLL-------VIKQIGYEGLESGHGFRHEFSTIMNEHEW 339 E VF + +K+ I + VL I I + + HGFR F +E + Sbjct: 298 --DELVFP--SPRKQQILSDMVLTSFLRKKKAISDIPGR-VATAHGFRSTFRDWCSEQGY 352 Query: 340 PADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 D E LAH V Y+ L++R MMQ WAD++ Sbjct: 353 SRDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV 393 >UniRef50_C3MF92 Phage integrase-like protein contains catalytic core domain n=77 Tax=Alphaproteobacteria RepID=C3MF92_RHISN Length = 402 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/371 (26%), Positives = 171/371 (46%), Gaps = 26/371 (7%) Query: 21 DGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP 80 DG GL+L+ G W LR + G+ + + +G ++L+EAR+ A R + G+DP Sbjct: 23 DGGGLWLHKREDGGSQWILRVNVHGRRREMGLGSASDVSLKEAREAAERWRALVRSGLDP 82 Query: 81 VK-----AKKASSNNNSFSAIYKEWYEHKK-QVWSVGYATELAKMFDDDILPIIGGLEIQ 134 +K ++A+ N + I ++ +E +K ++ G A + +LP +G + + Sbjct: 83 IKERQRQRREAARNLHCLDDIARDAFESRKAELKGDGIAGRWFSPLEIHVLPKLGKVPVV 142 Query: 135 DIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKG--- 191 DI+ + +V+ A E A KA R ++A G A D A A+ G Sbjct: 143 DIDQTDIRDVLAPIWHSKA-ETARKALNRLAICLKHAAALGLDVDLQATDKARALLGKQR 201 Query: 192 YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENR 251 ++ +N P +P +P F A+ S V+ +A ++L T +R+ LR + ++ Sbjct: 202 HKIENIPAMPWQDVPGF---FASLSDGSVTHLALRLLILTGVRSGPLRFL--RDEQINGD 256 Query: 252 IITIDASVMKGRKIHV----VPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENA 307 + TI MKGRK VP+SD + ++ + F+F + +K I + Sbjct: 257 VWTIPGEAMKGRKGATADFRVPLSDAALAVVEQARQHAR--DGFLFP--SLRKGVISDAT 312 Query: 308 VLLVIKQIGYEGLESGHGFRHEFST-IMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYL 366 + ++++ G E HGFR I + P D E L H GG+V Y +L Sbjct: 313 MSRLMERAGMEARP--HGFRSSLRDWIAEATDTPHDIAETTLGHIVGGAVERAYRRTDFL 370 Query: 367 DKRREMMQWWA 377 ++RR++M WA Sbjct: 371 EQRRQLMARWA 381 >UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NM52_9DELT Length = 406 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 105/402 (26%), Positives = 182/402 (45%), Gaps = 35/402 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q+ +P+E + L DG GL L V SG++ W LRY+ +GK + +T+G+YP M+L Sbjct: 3 LSDAQLRKIRPRESRFELTDGKGLVLLVLPSGRRSWLLRYQFEGKPRRITLGEYPDMSLL 62 Query: 62 EARDKAWTARKDISVGIDP----VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 +AR+ + R I G+DP + K A + + S + E+++ + + G E Sbjct: 63 QARNASEATRSIIKQGLDPALKRTEEKTAHKTSPTVSDLLTEYWDMELKESPSG--KERR 120 Query: 118 KMFDDDILPIIGGLEIQDI---EPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ + D+LP G ++ +I + LL+ +R A N+ + +F +A Sbjct: 121 RLVEKDVLPPWGKRKVAEITRRDAALLLDTVRAR----APVTGNRLQGVLVRMFNFAAER 176 Query: 175 GRAKYNPAPDLADAMKGYRKK----NFPFLPADQIPAFNKALATFSGSI----VSLIATK 226 G +++P + G RKK L +I ALA + ++ VS +A K Sbjct: 177 GVLEHSP-------LMGLRKKKEQPRSRVLADKEIKLLWDALALDNTAMDIYRVSKLALK 229 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 ++ T R E+ M W +D + I A MK ++ H VP+ +E++ + Sbjct: 230 MILLTGQRPGEVCGMTWDEIDGDT--WNIPAERMKSKEPHNVPLGSMALEIIEQARRYSP 287 Query: 287 PVSEFVFAGRNDKKKPICEN----AVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD 342 S FVF + K+ PI + A+L +++G + H R T + E Sbjct: 288 RGSTFVFKSSHFKEGPITPHSLSKAILRHWQEMGVTERFTPHDLRRTLRTRLAEIGVDDV 347 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E L H G + +YN Y ++R+ + W L E V Sbjct: 348 VGERVLGHKLQG-IMAVYNRHSYDKEKRQALALWERKLREIV 388 >UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8P5_PROMM Length = 422 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 118/424 (27%), Positives = 188/424 (44%), Gaps = 45/424 (10%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYV-PV--SGKKVWQLRYKIDGKE---KILTVGKY 55 LT +++ + K K Y G+ LY+ V PV SG K + + + +GK+ +I GK Sbjct: 3 LTEREVRSLSVKSKRYSRSVGDSLYVLVEPVKGSGGKSFVGKMRSNGKQIDVRIGVFGKG 62 Query: 56 PLM-TLQEARD-----KAW---TARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQ 106 P TL+ ARD ++W T R + D + S++ + + + + K Sbjct: 63 PGQWTLKAARDEWFRLRSWYRETGRDPRELQKDEKRQLAKQSSDQTLNELVDSYLIACKT 122 Query: 107 VWSVGYAT--ELAKMFDDDILPIIGGLEIQDIEPMQLL----------------EVIRRF 148 + T + ++I+P +GG P+ L E+ Sbjct: 123 KYKQSETTIKDKKNKLSNEIIPALGG-----STPVSRLGWDEKSKGRTGREAVFEITDSI 177 Query: 149 EDRGAMERANKARRRCGEVFRYAIVTG--RAKYNPAPDLADAMKGYRKKNFPFLPADQIP 206 E RG++ +A K +F YAI G NPA G+ ++ P L D++P Sbjct: 178 EKRGSLNQARKVLGVMRHLFDYAIERGWMERGQNPAVQARSVGAGHEVQHNPCLSWDELP 237 Query: 207 AFNKALA--TFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK 264 L +GS V L A K+ T LR L M W VD+ + T+ S MK K Sbjct: 238 QLLDDLNRNKGNGSQVVLAAIKLDLMTFLRVGSLVPMRWDEVDYAANLWTVPGSRMKSGK 297 Query: 265 IHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIK-QIGYEGLESG 323 H VP++D + +LL L I ++ R K I E+A+ +K ++GY G ++ Sbjct: 298 NHWVPLTDPIKDLLAHLRKINGDQDYVFWSPRGRSKPHIDESALNQHLKVRLGYGGRQTA 357 Query: 324 HGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD-WLD 381 HG R T E ++ A+ I+ Q+ HA G VR Y+ +Q LD+R + M+ W D LD Sbjct: 358 HGLRSLPLTAGQEVLKFSAEVIQRQMDHAVGDKVRQAYDKSQLLDERWKFMRAWCDALLD 417 Query: 382 EKVE 385 + +E Sbjct: 418 QGLE 421 >UniRef50_B5AXB8 Putative integrase n=1 Tax=Escherichia coli RepID=B5AXB8_ECOLX Length = 396 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 105/180 (58%), Gaps = 7/180 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT +Q+++ KP++K Y+L DG GLYL V +G K W+++Y+ D KE L G YP ++ Sbjct: 9 LTDRQLQSTKPRDKTYKLSDGGGLYLEVSQTGSKYWRMKYRRPSDKKEDRLAFGVYPTIS 68 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN----SFSAIYKEWYEHKKQVWSVGYATE 115 LQ+AR+K A+K + GIDP ++A+ +F I ++W E Q+W+ + Sbjct: 69 LQDAREKRDNAKKLLVKGIDPKAEQRAAKAEEKGAFTFETIGRQWVE-SHQMWNEDHRKR 127 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + I P IG +I+ +E M +L + ++ +D G + AN+ ++R ++ A ++G Sbjct: 128 VLRSLEMYIFPHIGTSDIRKLEAMTILPLFKKVDDAGKHDTANRLKQRVKDIIHSARLSG 187 >UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis RepID=Q1GUV7_SPHAL Length = 403 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 103/396 (26%), Positives = 167/396 (42%), Gaps = 27/396 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++AA Y+ DG+GL+L V +G W LR + DGK + + +G L+TL Sbjct: 4 LTAVAVKAALANPGTYQ--DGDGLFLKVGKTGAASWLLRLQRDGKRQDIGLGSAKLVTLA 61 Query: 62 EARDKAWTARKDISVGIDPV--KAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAK 118 EAR KA RK + V V + K + +F +++ + W S Y + Sbjct: 62 EARAKAAELRKAVKVEKRDVLTERKDEEAAKVTFREAATQYHSENEAGWKSDVYGRQWLA 121 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 ++ P +G + I ++ V+ E A + R R V Y+ G + Sbjct: 122 SLENYAFPKLGDMTTGGITAADIISVLTPIWQE-IPETARQVRNRICAVLDYSHAKGW-R 179 Query: 179 YNPAPDLADAMKGYR--------KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 + AP ++K R N +P +P F AL S +A +L Sbjct: 180 SSEAPSGNSSLKAGRGLPRQIKKPANRKAMPYVAVPPFLTALRRKPS--YSRLALDLLIL 237 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T +R++E+R W D + R+ TI A MK + H+VP+S+ + +L ++ +E Sbjct: 238 TGVRSQEVRLAKWDEFDLDQRLWTIPAEHMKRSRAHIVPLSEAALAVLVKADAMRLEGAE 297 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 VF G K N LL + + E HGFR F+ +P +E LAH Sbjct: 298 VVFPGMTGK---AMSNMTLLKVMRDMQEPFHV-HGFRSSFTDWAANEGFPNAVVEAALAH 353 Query: 351 ANGGSVRGIYNHAQYLDK------RREMMQWWADWL 380 +V+ Y YL R ++M+ W ++ Sbjct: 354 KTPDAVQAAYRRTTYLGTPDNPGARVKLMEAWGNYC 389 >UniRef50_B3R3M6 Prophage integrase n=4 Tax=Bacteria RepID=B3R3M6_CUPTR Length = 418 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 97/384 (25%), Positives = 178/384 (46%), Gaps = 27/384 (7%) Query: 16 PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDIS 75 P DG LY + SG + W ++ + G+ + + +G ++L AR +A R + Sbjct: 20 PGHYPDGGNLYFQISESGSRSWIFKFTLRGRSREMGLGPLASVSLAAARAEAAKCRDLLR 79 Query: 76 VGIDPVKAKKAS--------SNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILP 126 G+DP++A+K S F A ++ + W + +A + P Sbjct: 80 DGVDPIEARKCKQRQRMLELSGPRLFKAAAADYIAKHRAGWKNEKHAQQWTNTIATYAAP 139 Query: 127 IIGGLEIQDIEPMQLLEVIR---------RFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 I+G +++DI+ +++V++ F RG +E A + G R R Sbjct: 140 ILGDQDVRDIDTAMIVQVLQPIWIKKRETAFRLRGRLECILDAEKALGH--REGENPARW 197 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 + + L + + K+ P LP +IP+F K L G+ ++ +L T +RT+E Sbjct: 198 RGHLDKLLPKQNRRKKIKHHPALPWQEIPSFMKELREQRGTAARMLEHLIL--TVVRTQE 255 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 ++ + D R+ T+ MK VPM+D++VEL+ +++ +++ GR Sbjct: 256 VQFARPEEFDMRYRVWTVPGERMKMELPLRVPMTDRLVELVE--AALPGARDGWLYPGRK 313 Query: 298 DKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI-EVQLAHANGGSV 356 K KP+ A+L +++++GY G + HGFR F + + AD++ E+ LAHA Sbjct: 314 -KGKPLSNMAMLKLLERMGY-GHVTVHGFRSTFRDWVADCTEYADSLAEMALAHAIQNES 371 Query: 357 RGIYNHAQYLDKRREMMQWWADWL 380 Y L++RR+MM+ WA + Sbjct: 372 EAAYRRGDMLERRRKMMRDWAHYC 395 >UniRef50_Q7U5N5 Phage integrase family n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U5N5_SYNPX Length = 308 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 24/291 (8%) Query: 115 ELAKMFDDDILPIIGG---LEIQDIEPMQ---------LLEVIRRFEDRGAMERANKARR 162 + A ++ +LP++G L +Q +L++ + E R ++ A+KA Sbjct: 21 DYANCLNNQVLPVLGAETPLSCFAFSDVQRDGRTGRRIVLDMKKDLEKRAPVQ-ADKALM 79 Query: 163 RCGEVFRYAIVTG-RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALA--TFSGSI 219 +VF YAI G ++ NPA A + ++ P L ADQ+P F + L GS+ Sbjct: 80 VLRQVFGYAIDQGWMSEPNPAQGSRHARSSHVVQHHPTLTADQLPTFFERLNFNETKGSL 139 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 V A K+L + LR L + W +D I+TI A MK +K H+VP++ ++++L Sbjct: 140 VVRSAVKLLFLSFLRVGSLAGIRWSEIDEGESILTIPAERMKSKKSHLVPLTQPMIDVLE 199 Query: 280 TLSSITKPVSEFVFAGRND---KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE 336 L +T GR P NA L+ ++GY+GL HG R TI + Sbjct: 200 PLKDLTGDTGYVFDTGRGGCYPHMNPASINAYLI---KLGYQGLLRAHGVRSIPLTIGQD 256 Query: 337 -HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADW-LDEKVE 385 + + I+ QLAHA G VR Y+ + L +RR+ M W+D+ LD+ +E Sbjct: 257 ILGYKPEVIQRQLAHAIGDKVRQAYDRSTLLKERRDFMIAWSDYLLDQGLE 307 >UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LD60_RHOVA Length = 427 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 109/402 (27%), Positives = 181/402 (45%), Gaps = 34/402 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LTV+ +E +P + DG GLY SG K W +RY++ G+ + LT+G YP + Sbjct: 5 LTVRALENMRPGASRREIPDGIIQGLYFVHQPSGAKSWAVRYRVGGQTRKLTLGTYPAIG 64 Query: 60 LQEARDKAWTARKDISVGIDPVK-------AKKASSNNNSFSAIYKEWYE-HKKQVWSVG 111 L+ ARD A TA ++ G DP K +KA+ + A+ + E H KQ Sbjct: 65 LKPARDLASTALAAVARGEDPAKAKKAAKEKEKAAPARDFVEAVAASFIERHSKQKNKET 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + E ++ +I+P+ G ++ DI + EV+ +RG AN+ ++ +A Sbjct: 125 HIRETERILQREIVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRKMCAWA 184 Query: 172 IVTGRAKYNPAPDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 + +P + A A + R + L D++ A A L K+L Sbjct: 185 VDRSFIAVSPCHGIKAPASEKSRDR---LLSEDEMRAAWLAFEATGWPFGPL--AKLLLA 239 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 TA R E+ M W +DF+ RI TI A+ K + H VP+S+ + +L L + VS+ Sbjct: 240 TAQRRDEVADMRWSEIDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVAG-VSD 298 Query: 291 FVF--------AGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEHEWP 340 +VF +G + KK E + +Q+G EG+ + H R ++ M + P Sbjct: 299 YVFTTTGKTPVSGFSRAKKAFDEQ----ITRQLG-EGIPGWTLHDLRRTAASGMTALKSP 353 Query: 341 ADAIEVQLAHANGG--SVRGIYNHAQYLDKRREMMQWWADWL 380 ++ L H +G V +Y Y ++R + W +L Sbjct: 354 PHVVDAVLNHKSGTIKGVSAVYMRYGYAAEKRTALDAWGHFL 395 >UniRef50_A7MTK6 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MTK6_VIBHB Length = 290 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 119/255 (46%), Gaps = 2/255 (0%) Query: 124 ILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAP 183 I P +G + +++I ++ +R E +G +E + + +A+ NP Sbjct: 19 IYPKLGDVPVKEIRASMWIDAMRPLERKGKLETVVRTTALFRRIMNFAVNNDYIHNNPIG 78 Query: 184 DLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLW 243 + D K ++ NF + ++P + + + + + +T R+ E W Sbjct: 79 SMRDVFKKPKRGNFSCIDIKELPTLLTMVVQSTMRPANKLLFEFQLHTLTRSNEATGARW 138 Query: 244 KNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPI 303 + FE ++ + A K R +H +PM+ +V+ +L S++ SE+VF R KKP+ Sbjct: 139 EEFSFEEKVWYLPAERAKNRLMHKIPMTPEVISILKAAKSLSSG-SEYVFPSRTSLKKPV 197 Query: 304 CENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNH 362 + K++G G + HG R STI+ E ++ + IE L+H + VR YN Sbjct: 198 HSETINAAFKRLGLSGKMTSHGTRSLGSTILYERTDFESVVIEAVLSHTDRDGVRDAYNR 257 Query: 363 AQYLDKRREMMQWWA 377 ++ +KRR ++WW+ Sbjct: 258 NKFFEKRRAALEWWS 272 >UniRef50_B8IIS8 Integrase family protein n=9 Tax=Alphaproteobacteria RepID=B8IIS8_METNO Length = 420 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 97/384 (25%), Positives = 166/384 (43%), Gaps = 28/384 (7%) Query: 15 KPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 +P R DG GLYL V +G K W Y++ G+ + + +G + L AR+ A AR + Sbjct: 30 EPGRHADGGGLYLVVDPAGGKRWVFLYRMAGRRREMGLGPVLSVPLARARELAAEARAQV 89 Query: 75 SVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPII 128 + G+DP+ A++A ++ +F+ + + + +++ W + + + Sbjct: 90 AGGVDPIDARRAPPSDEPPPHRITFAEVAEVYMTDRERAWRNAAHRRQWRQTLEVQAASL 149 Query: 129 GGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPA----- 182 + + D+ +L V+R A E A + R R + A V G R NPA Sbjct: 150 WAMPVADVNTEAVLAVLRPIWHSKA-ETARRLRGRIERILDAARVAGHRGPENPARWKGH 208 Query: 183 -----PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 P +G+ LP ++PAF + A ++L TA R+ E Sbjct: 209 LDVLLPRAGKLQRGHHNA----LPYMEVPAFVAEIRQREAQTAR--ALELLILTAARSGE 262 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 +R M W VD + T+ MK ++ H VP+ + VE+L+ L +F RN Sbjct: 263 VRGMTWAEVDLVGALWTVPKERMKAKRPHRVPLCARAVEILSKLHLEAPDAEGLIFPSRN 322 Query: 298 DKKKPICENAVLLVIKQIGYEGLESGHGFRHEFST-IMNEHEWPADAIEVQLAHANGGSV 356 D + + ++++ Y + + HGFR F +E + P + IE LAH G + Sbjct: 323 DTV--LSDMVFAALLRRAKYPDI-TAHGFRSSFRDWAADETDHPREVIEAALAHMVGDAT 379 Query: 357 RGIYNHAQYLDKRREMMQWWADWL 380 Y L KRR +M W ++ Sbjct: 380 ERAYRRGDALAKRRLLMDDWGAYV 403 >UniRef50_B5J8B6 Site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacteraceae RepID=B5J8B6_9RHOB Length = 436 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/371 (24%), Positives = 173/371 (46%), Gaps = 31/371 (8%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKI--------LTVGKYPLMTLQEARDKAWTARKDISV 76 LYL V SG + W +R + G++ +G ++T+ +ARD+A R+ Sbjct: 65 LYLVVDPSGARRWIVRVVVKGQKNKKGAPLRTDFGLGGADIVTINQARDRALEYRRMAKQ 124 Query: 77 GIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGGLEIQD 135 G++P A + +F ++ + + W + + + D P IG + + Sbjct: 125 GLNP--RFNAQRDIPTFEEFAQQVHIERMPTWKNAKHGQQWINTLRDYAFPKIGRMPVDS 182 Query: 136 IEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPAPDLADAMKGYRK 194 I+ +++ + E A + +R V A G R+ NP + DA + Sbjct: 183 IDQPEVMMCLSPIWTE-KHETARRLAQRIKTVLDVARSKGFRSGENPVTAIKDAQALPKV 241 Query: 195 KNFP----FLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL---RTKELRSMLWKNVD 247 K P + +PAF L T + ++ LR+T L RT E+ M W+ +D Sbjct: 242 KTKPKHHKAMHWRDVPAFYTDLKTRNA-----MSANALRFTCLTGSRTSEVLGMRWEEID 296 Query: 248 FENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENA 307 F+ R+ T MK ++H VP++D+++ ++ L ++ S++VF G+ + KP+ + Sbjct: 297 FDARLWTCPIERMKTGEVHRVPLTDEMLSIIEPLKALK---SDYVFEGQK-RHKPLSNMS 352 Query: 308 VLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYL 366 +L++++++ EG+ + HGFR F +E P + E+ L+H G V Y + + Sbjct: 353 MLMLLRRMDVEGV-TVHGFRSTFRDWASEVASAPREIAEMSLSHRVGSDVERAYARSDLI 411 Query: 367 DKRREMMQWWA 377 +KRR +M+ W+ Sbjct: 412 EKRRALMKRWS 422 >UniRef50_B0QT04 Prophage CP4-57-like integrase n=1 Tax=Haemophilus parasuis 29755 RepID=B0QT04_HAEPR Length = 304 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 12/267 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY----KIDGKEKILTVGKYPL 57 LT ++E AKPK+K Y L+DG GL+L V +GKK W Y K L +G YP Sbjct: 8 LTNTEVEKAKPKDKDYSLMDGQGLFLRVKANGKKFWLFNYYKPFSTPPKRTNLGIGAYPE 67 Query: 58 MTLQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKK-QVWSV 110 ++L +AR R ++ IDP + ++ S N+F A+ K+W E K +V Sbjct: 68 ISLAQARLIRDEWRALLAKNIDPKVHRQNIVDEEISKRENTFEAVAKKWREKKSLEVQPK 127 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 A++ ++ + IG + + +I P +++ + ++RG + ++ R EV + Sbjct: 128 TMEKNWARL-ENHLFSKIGNVAVSEITPKMVIKAVEPLKERGVGDTLHRVIRLLNEVLNF 186 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 A+ G ++N +++ + +N P + + +P F L + SI I K Sbjct: 187 AVNMGLIEFNKCVNVSANFSTHTAENNPTIRPELLPEFLSDLDDSNSSIQVKILIKWQLL 246 Query: 231 TALRTKELRSMLWKNVDFENRIITIDA 257 T +R +E S+ W+ +DF + TI A Sbjct: 247 TMVRPREAVSVEWQEIDFAKKTWTIPA 273 >UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RKK3_ACIRA Length = 426 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 112/409 (27%), Positives = 177/409 (43%), Gaps = 59/409 (14%) Query: 23 NGLYLYVPVSGKKVWQLRYKI------DGKEKI----LTVGKYPLMTLQEARDKAWTARK 72 +GL L V +VW LR + DGK K + +G YP ++L EAR KA R Sbjct: 28 DGLCLNVE-GNSRVWILRAVVGKRLDKDGKLKPHRRDIGIGPYPEVSLAEARAKATELRL 86 Query: 73 DISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL---------AKMFDDD 123 I GIDP+ K+ + + + +V EL + Sbjct: 87 QIRSGIDPIAHKQEQLEKLYVQKLRDKTFMECAKVVIANKTRELKNEKHIGQWTSTLETY 146 Query: 124 ILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY-NPA 182 I P +G + I I + + EV+R + E A + R R +F YA G + NPA Sbjct: 147 IYPTLGDISIGTITKVDIAEVLRPIWIK-KNETAKRIRGRIETIFDYAKAMGYFEGDNPA 205 Query: 183 -------PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY---TA 232 P + + R P LP +Q+ F + L G I+ K L + TA Sbjct: 206 EWKGNLEPIFGNIKQESRP--HPSLPYEQVAGFIQHLRQKKG-----ISPKALEFAILTA 258 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R+ E+ W+ +DF+N++ I MK K H VP+S + V LL ++ T+P +F+ Sbjct: 259 CRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRVPLSQEAVNLLKSIQEYTQP-QDFI 317 Query: 293 F-AGRNDKKKPICENAVLLVIKQIGYEGL-ESG--------------HGFRHEFST-IMN 335 F A RN + + ++ ++IK++ + L E+G HGFR F + Sbjct: 318 FPAPRNGAM--LSDMSLTILIKRMHEQKLKENGLGYIDPKQNRVITTHGFRSTFRDWSAD 375 Query: 336 EHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + ++P + E LAH V Y YL+KR+ +M WA++ + Sbjct: 376 KTDYPREVCEHVLAHKLPDEVEAAYLRGAYLEKRKGLMADWAEFCSANI 424 >UniRef50_A5F3U5 Site-specific recombinase, phage integrase family n=5 Tax=Vibrio RepID=A5F3U5_VIBC3 Length = 411 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 165/385 (42%), Gaps = 29/385 (7%) Query: 15 KPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 K + L DG+GL V + G WQ RYKI+G K + +G YP ++L +AR++A R+ + Sbjct: 19 KVFTLTDGDGLGARVSLQGNVRWQFRYKINGASKRVDLGDYPDLSLLKAREEAQKCREWL 78 Query: 75 SVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYAT-------ELAKMFDDDILPI 127 + G DP K +++ + + + + W V YA + F I P Sbjct: 79 AEGHDP-KLQRSVIRQETLKPVS---VQDALEYWLVEYAESNRANADKHRSQFQKHIYPY 134 Query: 128 IGGLEIQDIEPMQLLEVIRRF------EDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 IG L + E +E R + R A A + + R+ V A Sbjct: 135 IGALPLAQTETHHWIECFDRVRKGIAGKQRPAPVAAGYVLQNAKQALRFCRVRRYATSRV 194 Query: 182 APDLA--DAMKGYRKKNFPFLPADQIPAFNKALAT---FSGSIVSLIATKVLRYTALRTK 236 DL D K RKK+ L A ++ A+ T F L+ K L RT+ Sbjct: 195 LDDLTVNDVGKKQRKKD-RVLTAQELSDLWNAVQTPNKFLPYYCHLV--KFLVVFGARTQ 251 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+R WK DFE I T+ K + + P+ D++V L L + E + G Sbjct: 252 EVRLSKWKEWDFEALIWTVPKEHSKTDEKIIRPIPDELVPWLLQLKEDSD--KETLILGE 309 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 + + + +++G+E + H R +T +NE +E L H+ GG V Sbjct: 310 EKSPETVSQQGRFF-WQRLGHEEAWTLHDIRRTLATRLNELGVAPYVVEQLLGHSLGG-V 367 Query: 357 RGIYNHAQYLDKRREMMQWWADWLD 381 IYN +QYL ++RE + W + LD Sbjct: 368 MAIYNRSQYLPEKREALTMWLEHLD 392 >UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteria RepID=B8GZR1_CAUCN Length = 517 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 118/414 (28%), Positives = 173/414 (41%), Gaps = 67/414 (16%) Query: 21 DGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP 80 DG GLYL V G K W RY + G+ + + +G ++L EAR +A AR G+DP Sbjct: 109 DGRGLYLQVHNGGSKSWIYRYTLKGRVRAMGLGPTHRVSLAEARAQAQAARLLRDQGLDP 168 Query: 81 ---------------------VKAKKASSNNNSFSAIY-----KEWYEHKKQV-WSVGYA 113 + +A +A Y W K Q WS A Sbjct: 169 IAARAAATPPPEPPSPPKTREIAVAEAGLAFKDAAAAYIRTNSAAWRNAKHQAQWSATLA 228 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 T P+ G + +I+ +L V+ A E A++ R R V +A V Sbjct: 229 TY--------AYPVFGDRPVSEIDTAMVLSVLEPIWSTKA-ETASRLRGRIEAVLDWASV 279 Query: 174 TG-RAKYNPA-------PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIAT 225 G R NPA L K R ++ LP IPAF + L T G+ + Sbjct: 280 RGHRQGENPARWKGHLDKILPAKSKIARVEHHAALPFSTIPAFMRDLGTRPGAAARALEF 339 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI- 284 +L TA RT E+ W +DFE R+ T A K RK H VP+ D + +L ++ Sbjct: 340 AIL--TAARTGEVIGAQWSEIDFEARLWTQPAERTKTRKEHRVPLCDAAMAILASMREAF 397 Query: 285 -----------TKPVSE------FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFR 327 KPV + F+FAG + K + A+L ++++G+ L + HGFR Sbjct: 398 LTGRREFLLLYNKPVPDDMPLEGFIFAGMR-RGKGLSNMAMLKTLERMGHPDLTT-HGFR 455 Query: 328 HEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 F E + + +E+ LAHA G V Y L+KRR++M+ WA + Sbjct: 456 STFRDWAAETTGYQNEVVEMALAHAIAGKVEAAYRRGDLLEKRRDLMRDWAAYC 509 >UniRef50_A0RRJ7 Site-specific recombinase, phage integrase family, putative n=2 Tax=Campylobacter fetus RepID=A0RRJ7_CAMFF Length = 412 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/400 (23%), Positives = 190/400 (47%), Gaps = 34/400 (8%) Query: 4 VKQIEAAKPKEKPYRLLDGNGLYLYV---PVSGKKVWQLRYKIDGKEKILTVGK-----Y 55 VK++E K Y L LYL++ + G + + + KI+ +T Y Sbjct: 16 VKKLEYKGGKFSKYALGGVANLYLFIYKPNLKGSSIKKYKIKINANFHSITDEYNQEMVY 75 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 P +L +AR K ++++ KAK++ S N F + E+++++ ++ A + Sbjct: 76 PDTSLNKARHKVRILQQEL-----IQKAKESISPN--FDKLANEYFKNRSNKIAIKTAEK 128 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + I +G I I +++++ E + E A + + +F+Y++ G Sbjct: 129 EQGRYKNYIKETLGDKPINKISYKSIVDLLLNIEAKFTRETAERVKMVINGIFKYSLSLG 188 Query: 176 RAKYNPAPDLADAMKGYR--KKNFPFLPADQIPAFNKALATFSGSIV--SLIATKVLRYT 231 + NP P + R K + ++I +++ T+ V +L T + T Sbjct: 189 VIEANPTPTTSVFYNQQRVSKPRSAIIEPEEIKELIRSINTYKNPTVKNALFFTML---T 245 Query: 232 ALRTKELRSMLWKNVDFENRI--ITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 A R ++ ++ W N++ +N I I + +MK ++ H+ +S Q +E++ S T V+ Sbjct: 246 AQRQNQILNLKWSNIEVKNGITFIRFSSEIMKMKRTHLTALSSQALEIIE--SQKTFRVN 303 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE----HEWPADAIE 345 E+VF G + K + + +L + +GY+G S HGFR FSTIM E H ++ IE Sbjct: 304 EYVF-GMANNKGIMSDCTMLQALNDMGYKGKHSTHGFRATFSTIMAENEHKHNLSSELIE 362 Query: 346 VQLAHANG---GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + LAH+ G V Y+ + L+++ +W+++++++ Sbjct: 363 LCLAHSTTTIKGKVASAYDRSFKLEQQLMAYEWYSNFIND 402 >UniRef50_Q0HZV2 Phage integrase family protein n=3 Tax=Gammaproteobacteria RepID=Q0HZV2_SHESR Length = 427 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 169/386 (43%), Gaps = 27/386 (6%) Query: 18 RLLDGNGLYLYVPVSGKKVWQLRYKIDGKE--KILTVGKYPLMTLQEARDKAWTARKDIS 75 R DG+GLYL P G W LRY + + T+GK +L +ARD+A R I Sbjct: 20 RHSDGDGLYLMTPKRGDAYWMLRYTTPTTKLRREYTIGKVDDWSLADARDEAAKLRLAIK 79 Query: 76 V-GIDPVKAKKASSNN--NSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLE 132 G+DPV+ +K + N + + +Y ++++ +++ + + +++ ++ IG +E Sbjct: 80 REGVDPVQERKKVNQNPFKTLNDLYADYHQLRQR--QIATHEKEKSLYEREVAWRIGKVE 137 Query: 133 IQDIEPMQLLEVIRRFEDRGAMER------ANKARRRCGEVFRYAIVTGRAKYNPAPDL- 185 + I P+ + E++R + G ++ +N R +F + I ++NPA Sbjct: 138 LDKIRPLDISEILRDIAN-GYGDKPPRPTISNDVMRMLKRIFDHGIKLDVTRFNPASPFR 196 Query: 186 -ADAMKGYRKKNFPFLPADQIPAFNKALATFSG-SIVSLIATKVLRYTALRTKELRSMLW 243 DA + N P + + F K A + S + +A +L T R EL + W Sbjct: 197 PKDAGGEEQAANDPMTETEVVEFFTKLRAIPAQFSRENYLACALLIATCTRKMELLAAPW 256 Query: 244 KNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKP- 302 D NR+ + + K R+ +P+SD + L L I SE+VF R KK Sbjct: 257 HEFDLPNRVWHLPKNRTKKRRAIDIPLSDAALLWLEEL-KIRSCGSEWVFPARRISKKAR 315 Query: 303 ---ICENAVLLVIKQIGYEGLESG-----HGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 +CEN + +K++ + S H R T M + P + + L G Sbjct: 316 TPHVCENTLNHALKKLFEQNFFSFEKRRLHDLRGTARTRMGKMNIPDNIAQRCLNQIPGN 375 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWL 380 GIYN Y ++R+ +WL Sbjct: 376 RTDGIYNKDAYFEERKVAHNMLGEWL 401 >UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q013_9GAMM Length = 455 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 100/387 (25%), Positives = 168/387 (43%), Gaps = 39/387 (10%) Query: 25 LYLYVPVSGKKVWQLRYKI--DGKEKILTVGKYPLMTLQEARDKAWTARKDI-SVGIDPV 81 LYL V + K W RY GK + ++ G YP +TL A D W +D+ S IDP Sbjct: 33 LYLMVRPNETKSWLFRYTSPNTGKSQRISFGIYPSITLARAHD-IWQEYQDLLSKNIDPR 91 Query: 82 KAKKA------SSNNNSFSAIYKEWYEHKKQVW---SVGYATELAKMFDDDILPIIGGLE 132 +KA +++ +F E+++ K + ++ K+ D Sbjct: 92 DNRKAVKQALLENDDRTFGRFADEYFDTLKTILKPNTLQRKLNCLKLLKDSF----AETP 147 Query: 133 IQDIEPMQLLEVIRRFE------DRGAMERANKARRRCGEVFRYAIVTGRAKYNPAP--- 183 I +I P Q+L ++ + D E+A + ++F+YA G +PA Sbjct: 148 IDEITPPQMLSMLIDVQNQFVKADGKPTEKAERCASIASDIFKYASARGFCSTDPASMVK 207 Query: 184 -DLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIAT--KVLRYTALRTKELRS 240 L + G+R + D+ + + + + S + ++L +R +LR Sbjct: 208 SQLIKPVYGHRPA---IIQPDKFAKLLQDIDSLKDKVDSNTNSSLRLLPMLFVRNGDLRR 264 Query: 241 MLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 M W ++DF +G+ + VVP+ Q +E+L I SEFVF Sbjct: 265 MRWADLDFNEAKWRFQPLKGEGKEHMVRDMVVPLPRQAIEILQHQYKINGH-SEFVFYSP 323 Query: 297 NDKKKPI-CENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGG 354 + KK I +N +K++GY+ + HGFR T++ E ++PA +E+ L H Sbjct: 324 SAKKNGIISDNTANKHLKELGYQNVHCVHGFRASAKTMLQEQLKYPAVIVEMGLGHITKD 383 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 Y ++L+ R EMMQ WAD+LD Sbjct: 384 QNGTAYGRFEFLEDRAEMMQTWADYLD 410 >UniRef50_A3JW30 Site-specfic recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW30_9RHOB Length = 389 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 156/363 (42%), Gaps = 16/363 (4%) Query: 24 GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKA 83 GL LYV SG+ W R ++G + + +G P+ TL EAR+ A+ ++ G DP+ Sbjct: 25 GLQLYVKKSGRSYWVQRLTVNGIRRDIGLGSPPITTLAEAREVAFENKRIARAGGDPLAQ 84 Query: 84 KKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLL 142 K+ + SF ++ W A + + P IGG + +++ + Sbjct: 85 KRQKAVIPSFEQAARQVVVELGPTWRGAKEAASFISTMECYVFPRIGGSRVSNVQSSDVR 144 Query: 143 EVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFP--FL 200 +I + A A + + R VF+++I NPA A A+ K P L Sbjct: 145 NIIMDVR-KTAPTVAARLQTRISAVFKFSIAKNWRTDNPATSSALALPKPTHKPKPRVSL 203 Query: 201 PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFE--NRIITIDAS 258 P Q+ A+ + + +A + TA R+ E+R W +D + NR + Sbjct: 204 PYLQVSGCIHAVNNSHAWVGTKLAIEFTILTASRSGEVRKAEWCEIDGDLWNR----PSE 259 Query: 259 VMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE 318 MK H VP+S++ + +L I A R + + + +IK++G+ Sbjct: 260 HMKEEIAHSVPLSERALAILEKAQEINNESGLIFPAPRGGM---LSDMTMSKLIKELGFA 316 Query: 319 GLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 HGFR F T E + + EV LAH+ GG Y + YL+KRR MM W+ Sbjct: 317 A--DVHGFRTSFRTWSQEQTNFAWEVGEVALAHSVGGKSERAYARSDYLEKRRLMMAAWS 374 Query: 378 DWL 380 +L Sbjct: 375 SYL 377 >UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria RepID=B0T5C0_CAUSK Length = 436 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 115/417 (27%), Positives = 181/417 (43%), Gaps = 54/417 (12%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q+ K +P DG GLYL V G K W RY + G+ + + +G ++L Sbjct: 8 LTALQV---KRTTRPGMHPDGGGLYLMVQKGGGKSWVYRYMLQGRAREMGLGPAHTISLS 64 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW----SVGYATE-L 116 EAR A AR+ GIDP++ ++ + + A ++ + G+ E Sbjct: 65 EARAMARDARRLKFDGIDPIEQRQLARTRTTLEAAKGFTFKQASSAYIRANKAGWRNEKH 124 Query: 117 AKMFDDDIL----PIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A+ ++ + PI G + DI+ +L V+ E A++ R R V +A Sbjct: 125 AQQWESTLTTYADPIFGSRGVSDIDTGMILAVLEPIWSTKP-ETASRVRGRVEAVLDWAT 183 Query: 173 VTG-RAKYNPAPDLADAMKGYRKKNFP------------FLPADQIPAFNKALATFSGSI 219 G R NPA KG+ +K P LP ++ AF AL G+ Sbjct: 184 ARGLREGENPA-----RWKGHLEKLLPAKSRVHKVEHHAALPYAELSAFMAALKDQPGAG 238 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 + +L TA RT E+ W +D ++ I A MKGRK H VP++ ++E+L Sbjct: 239 ARALEFTIL--TAARTGEVIGAEWSEIDLAGQVWIIPADRMKGRKEHRVPLTAPLIEILE 296 Query: 280 ------------TLSSITKPVSEFV------FAGRNDKKKPICENAVLLVIKQIGYEGLE 321 L S +P+ + + F G KK + A+L V+K++ E L Sbjct: 297 GRKADYAAVIRRVLESKRQPIPDDIPPVGPLFWGTLFGKK-LSNMAMLAVLKRMKREDL- 354 Query: 322 SGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 + HGFR F E E+ ++ +E+ LAH G V Y +KR+ +M+ WA Sbjct: 355 TAHGFRSTFRDWAAETTEYRSEIVEMALAHTIGNKVEAAYRRGDLFEKRKLLMEDWA 411 >UniRef50_Q1YTS1 Putative phage integrase n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTS1_9GAMM Length = 429 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 110/410 (26%), Positives = 173/410 (42%), Gaps = 59/410 (14%) Query: 16 PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM--TLQEARDKAWTARKD 73 P R G+GLY + SG + +RY+I+GK +G Y + L AR K R Sbjct: 19 PKRYPLGDGLYFTIKHSGAMSFGIRYQINGKTDYKGMGGYDKVHNNLGIARAKCEAYRVQ 78 Query: 74 ISVGIDPV----------KAKKASSNNNSFSAIYKEWYEHKKQV---WS-VGYATELAKM 119 I GIDP ++ KA+ + K Y+H K + W+ V + Sbjct: 79 IRQGIDPKIEEQQALNLKQSAKAAEDQLKDRTFAKYAYQHIKSLEPSWTNVKTFAQWRSS 138 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRR--FEDRGAMERANKARRRCGEVFRYAIVTG-R 176 + P+IG + D+ Q+LE+++ F+ E A++ RRR + AI R Sbjct: 139 LEQYAFPVIGETPVSDVSRTQVLEILQPIWFDK---TETADRVRRRIAAILDAAISDDLR 195 Query: 177 AKYNPA-------------PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLI 223 + NPA L A ++ L +P F ++L G I Sbjct: 196 TERNPAIWRGSLHGKLPSVETLKKAKAPTEERAHASLHYAHLPMFMESLRAQDG-----I 250 Query: 224 ATKVLRYTAL---RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTT 280 + L + L RT E+ W D E I +I A MKGR+ H +P+S Q + L+ Sbjct: 251 GARALEFCILNASRTTEVLDATWGEFDLEEGIWSIPARRMKGRERHNIPLSTQSIALIKQ 310 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIG--------YEGLESGHGFRHEFST 332 L + +S+FVF R++ K + + + V+K++ + L + HGFR F T Sbjct: 311 LKQLK--MSDFVFPNRSNGKS-LSQAGMSSVLKRMNKINDWKDIHGQLITVHGFRGCFKT 367 Query: 333 IMNEH---EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADW 379 E +W E+ LAH Y +DKRR +MQ ++D+ Sbjct: 368 WTTEKTDTDWLTG--EMALAHKIKDKSSATYQKGDLIDKRRRLMQKYSDY 415 >UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4A7S2_9GAMM Length = 412 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 102/392 (26%), Positives = 165/392 (42%), Gaps = 36/392 (9%) Query: 18 RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVG 77 R LD GLYL V G K W RY+ +G+ + L +G YP ++L +AR + AR G Sbjct: 21 RHLDAEGLYLLVARGGSKNWIYRYQHEGRRRELGLGGYPAVSLAKARMRRDAARDQRQQG 80 Query: 78 IDP----------VKAKKASSNNN------SFSAIYKEWYEHKKQVWS-VGYATELAKMF 120 DP ++A+ A+ +F + E+ ++ W+ + + Sbjct: 81 HDPLEVRDRQRAQLRAQMAAETAERERAAMTFLRVADEFIDNNAAGWTNRKHGQQWRNTL 140 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKY 179 PI+G + + ++ Q+L+V+ E A + + R V YA G R Sbjct: 141 KTYAFPILGVVPVGEVTTDQVLQVLTPIWTE-KTETAKRLQGRIERVLDYATTKGHREGD 199 Query: 180 NPA----------PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 NPA P + ++ P+L A ++ A + T +G + L R Sbjct: 200 NPARWRGHLDNVLPRPGKVHRVEHQRALPYLEAPELAAKLTDVDTAAGRALLLTLLCATR 259 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 + E W +D + + I A MK K H +P+ D V +L T S Sbjct: 260 TS-----ETLEATWSEIDLDRKEWRIPAVRMKAGKEHRIPLCDAAVAVLKTQSVHQGERG 314 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQL 348 ++VF G+ + K + A+ V+K+ + S HG R F + E +P EV L Sbjct: 315 DWVFPGQK-RGKCLSNMAMTNVLKRTDWLERTSVHGLRSTFRDWVGEKTRYPERMAEVAL 373 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 AH V+ Y A +++RREMM WA +L Sbjct: 374 AHQLTDKVQAAYFRADLMEQRREMMNEWAAFL 405 >UniRef50_B2TTV9 Site-specific recombinase, phage integrase family n=25 Tax=Proteobacteria RepID=B2TTV9_SHIB3 Length = 439 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 110/405 (27%), Positives = 178/405 (43%), Gaps = 33/405 (8%) Query: 2 LTVKQIEA-AKPKEKPYRLLDGNGLYL-YVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT QI A K E+ DGNGLYL Y W+ RYK+ GK + + +G Y ++ Sbjct: 24 LTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFRYKLAGKSRAMLIGSYSELS 83 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK-----------ASSNNNSFSAIYKEWYEHKKQV- 107 L +AR+ A +++G D K+ A N S + E++E +Q+ Sbjct: 84 LSKARETAKELSARVALGYDVAGEKQKHKTEALAKMEAEKNAMRVSELAAEYFE--RQIL 141 Query: 108 --WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCG 165 W + L + D DI P IG ++++D++P + ++++ DRGA A R Sbjct: 142 PRWK--HPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLKGIVDRGAPTIATDVLRWTR 199 Query: 166 EVFRYAIVTGRAKYNP--APDLADAMKGYRKKNFPFLPADQIPAFNKALATFSG-SIVSL 222 +F Y I + NP A ++ADA G +L D++ KA+ T G S + Sbjct: 200 RIFDYGIKRHALEINPCSAFEVADA-GGKEAARDRWLTRDELIQLFKAMRTAKGFSRQNE 258 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 I K+L +R EL + W+ D + + + K +P+ VE L L Sbjct: 259 ITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERSKNGDPIDIPLPSPAVEWLRELH 318 Query: 283 SITKPVSEFVFAGRNDKKK---PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-- 337 + + S +V R + + I E+ + + + ++ E + + H+F H Sbjct: 319 TFSCN-SAWVLPARKMQNRMIPHIQESTLPVALAKVRAEMPDVPNFTIHDFRRTARTHLA 377 Query: 338 EWPADAI--EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 D + E L H G V GIYN QY D+R+ + WAD L Sbjct: 378 ALGVDPVVAERCLNHRIKG-VEGIYNRHQYFDERKAALAQWADLL 421 >UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12EX0_POLSJ Length = 410 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 104/379 (27%), Positives = 167/379 (44%), Gaps = 27/379 (7%) Query: 24 GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKA 83 GL+L+V SG + W LR + K + +G YP +TL ARD A AR I G++P++ Sbjct: 29 GLHLWVKPSGNRSWILRVLVGAIRKDIGLGGYPDVTLAGARDAARRARDQILQGVNPIEQ 88 Query: 84 KKAS--------SNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGGLEIQ 134 ++ + + +F + E + W + + + + P IGGL ++ Sbjct: 89 RRQAKALLMADQAKAKTFKDCSAAFIEDRGDEWRNPKHRQQWHNTLETYAFPFIGGLFVR 148 Query: 135 DIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPA-------PDLA 186 DI +LEV+R + E A + R R V +A V G RA NPA L Sbjct: 149 DISLAHVLEVLRPIW-KTKTETAARVRGRIETVLDWAAVRGYRAGDNPARWKGHLDQVLP 207 Query: 187 DAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNV 246 K + ++ + D + F A+ G + +L TA R+ E+R LW Sbjct: 208 KPSKVKKVEHHSAVGLDDLAGFIAAVRRVPGMGARALEFAIL--TAARSGEVRGALWSEF 265 Query: 247 DFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICEN 306 D + + MK + H VP+S Q ++LL ++ S+ VF G K + + + Sbjct: 266 DLKAAQWIVPPERMKAGEEHRVPLSKQAIKLLKSIPRFEG--SDVVFCG--IKGQVLSDM 321 Query: 307 AVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRGIYNHAQY 365 + V++++ + HGFR F +E +P + E LAH V Y Sbjct: 322 TLSAVMRRMEVNAVP--HGFRSTFRDWASERTNFPRELAEKALAHTIESKVEAAYRRGDL 379 Query: 366 LDKRREMMQWWADWLDEKV 384 L KR +MMQ WAD+ + V Sbjct: 380 LAKRMQMMQAWADFCETPV 398 >UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TXN0_MARAV Length = 396 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 164/395 (41%), Gaps = 37/395 (9%) Query: 22 GNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPV 81 G GL + + + G K W R++ GK+ +++G+YP +L EARD A ++ GI+P Sbjct: 6 GGGLAIRISIRGTKTWFYRFRFRGKQDAVSLGRYPTTSLLEARDVHGDACALLAKGINPK 65 Query: 82 KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDIL------------PIIG 129 KA K S + +E ++ +V+S +T + + ++ +G Sbjct: 66 KAFKESKKVAEQTWTGQELFDDWIRVYSSTPSTRTKRTPSEQVVRQTTWRWNKYLRRTLG 125 Query: 130 GLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPA----PDL 185 + I I +I + + E+A K +F A+ G NP P Sbjct: 126 QILIPTITKQVAASLISAVSELNSREQARKCLTILNGMFGLAVAKGLIDENPCYGLQPSK 185 Query: 186 ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKN 245 A KG + L ++ F +AL S A K + T LR E+ W + Sbjct: 186 LGASKGSPRSR--VLTPSEMKRFWEALEDSSLDTSVRAALKAILLTGLRRGEICQAKWSD 243 Query: 246 VDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICE 305 +DF + + + K R+ H VP+S + LL +L +VF +PI Sbjct: 244 IDFNTNVWNLPPEITKSRRKHTVPISTALKNLLQSLDMD----GTYVFRSTRAPWQPIGS 299 Query: 306 NAVLLVI--------KQIGYE----GLE--SGHGFRHEFSTIMNEH-EWPADAIEVQLAH 350 N++ I +Q+ + GLE S H R +T + E+ E P I L H Sbjct: 300 NSLTTAIARLQGIKTQQVNEKAPLFGLERFSVHDLRRTVATGLGEYCETPPHVIRRILNH 359 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + + IY A D++ + ++ W+ W+ E +E Sbjct: 360 LSDDRLEDIYQRATLFDEQAKALERWSTWVMETIE 394 >UniRef50_A5UG79 Prophage integrase n=1 Tax=Haemophilus influenzae PittGG RepID=A5UG79_HAEIG Length = 339 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 85/338 (25%), Positives = 162/338 (47%), Gaps = 16/338 (4%) Query: 50 LTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASS---NNNSFSAIYKEWYEHKKQ 106 +++G +P ++L AR+ A R I IDP++ + +S+ +F+ + W + + + Sbjct: 1 MSLGAFPDLSLAYAREIATEYRGLILRNIDPLEYRNSSNIEEKKTTFAEMAIRWRDKRLK 60 Query: 107 VWSVGYAT--ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 + + T + + + + P I L I L V+ ++ + + N A Sbjct: 61 LGKLKPETVNDAFRRVELHLFPKIADLPIDQANYKTLEPVLSPLKNSNTLYKINIA---I 117 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL--ATFSGSIVSL 222 ++FR A NP + D KN P L +++P + + A L Sbjct: 118 NQIFRMAEDEDLIVKNPFRKIHDEFTYVETKNHPTLAPEELPRLFEVMQGANLEKPTALL 177 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKG-RKIHVVPMSDQVVELLTTL 281 I ++L + LR+ E S+ W ++D++ + + I A MKG ++ H VP+S Q + +L + Sbjct: 178 IEWQLL--SILRSSEAVSIEWADIDWDAKALHIPAERMKGGKRSHSVPLSRQALNILEQM 235 Query: 282 SSITKPVSEFVFAGR-NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-W 339 ++VF R +P+ A + +K++G++GL HG R ST ++E + + Sbjct: 236 RRYNGN-RKYVFCSRIAPYNRPMNSGAANVALKRMGFKGLLVAHGLRSIASTYLHELDRF 294 Query: 340 PADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 ++AIE+ L+H N G VR Y+ ++ R+E+MQ W Sbjct: 295 SSEAIELCLSHENRGKVRAAYDKSKKWRSRQEIMQTWG 332 >UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanella RepID=A4Y9I4_SHEPC Length = 432 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 101/402 (25%), Positives = 173/402 (43%), Gaps = 35/402 (8%) Query: 5 KQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTV--GKYPLMTLQE 62 KQI++ ++ R G+GLY+ V G W++RY ++GK + + G YP M+L E Sbjct: 14 KQIKSFLKSKELGRKAVGDGLYIRVQTEGVAYWEVRYSVNGKRRSMVPNGGVYPAMSLVE 73 Query: 63 ARDKAWTARKDISVGIDPV--KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 A+ +A + GIDP+ + ++ + + ++ +WY+ + + +M+ Sbjct: 74 AKAEAAKVKLLAKQGIDPLAERERQQEITIKTVNDLFDDWYQCTAP--RLKHPEIPMRMY 131 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 DI P IG L++ D+ + ++ + ANK C ++F +A A N Sbjct: 132 TKDIKPAIGQLKVTDVNARDIRAILHKVVKSNRPTVANKTLLFCKQLFNHACKLDVASGN 191 Query: 181 PAPDLADAMKGYRKKNFP-FLPADQI----PAFNKALATFSGSIVSLIATKVLRYTALRT 235 PA A G +KN L ++I P + FS + +A +L +R Sbjct: 192 PAAAFNTADAGGLEKNRTRVLSLNEIAAAFPVLRNSRPIFSHE--NYLAVALLLCLGVRK 249 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 EL + W DF+ ++ + K +P+S+ V+E L L I SE+VF Sbjct: 250 GELIAAKWSEFDFDQQVWRMPKERSKTGVGITIPLSEFVIEWLKEL-KIIACGSEYVFPA 308 Query: 296 RNDKKK------PICENAVLLVIKQ------------IGYEGLE--SGHGFRHEFSTIMN 335 R K+ +A+ + Q +G G+E + H R T++ Sbjct: 309 RKASKRREYIANDTLNHALAKLFGQKHDSNKQPFENLLGKAGVEHFTVHDLRRTCRTLLA 368 Query: 336 EHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 + P E L H G + G YNH YL++RRE + A Sbjct: 369 SLKVPPHIAERCLNHKLKG-IEGTYNHHDYLEERREALDKLA 409 >UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJP3_HIRBI Length = 395 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 113/403 (28%), Positives = 173/403 (42%), Gaps = 66/403 (16%) Query: 13 KEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKA----- 67 + K R DG GLYL V +G + W Y+ K + +G YP ++L EAR +A Sbjct: 16 RAKTGRHSDGGGLYLNVKQTGARNWLFIYRWGDKRPSIGLGGYPSVSLSEARKQAAMCRD 75 Query: 68 W---TARKDI----------SVGIDP--------VKAKKASSNNNSFSAIYKEWYE-HKK 105 W T RKD V I+P + A K N A ++ E + + Sbjct: 76 WLNQTPRKDPKKEWMVLNAPEVRIEPFGPFALRHIDAIKGDFRNAKHIAQWRSTLERYAE 135 Query: 106 QVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCG 165 +W A L ++ D +L + EP+ + E A + R R Sbjct: 136 PIW----AKPLNEIEVDHVLKCL--------EPIWATK----------NETARRVRGRIE 173 Query: 166 EVFRYAIVTG-RAKYNPAP---DLADAM--KGYRKKNFPFLPADQIPAFNKALATFSGSI 219 V A V G R NPA L + K ++K+ L DQ+ AF + L SG Sbjct: 174 AVLESARVRGMREDPNPASWNGQLKHVLGRKRPKQKHLAALEYDQMHAFWQTLRQKSG-- 231 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 + +A + TA R+ E+R W +D E I +I A MK K H+VP+S + ++ Sbjct: 232 IGALALQFTILTAARSGEVRGATWNEIDIEAGIWSIPAERMKAEKPHMVPLSQAALAIID 291 Query: 280 TLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE----SGHGFRHEFST-IM 334 +S + E +F G KPI + + ++ + + + HGFR FS Sbjct: 292 HISKARQ--GELIFMGMR-AGKPISDMTMTKALRDMKLTNSQGEAVTAHGFRSTFSDWAR 348 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 NE ++P + IE LAH+ G V Y Q +++RR +M+ WA Sbjct: 349 NETDFPRELIEESLAHSL-GKVEAAYRRGQAIERRRALMEAWA 390 >UniRef50_D1ZVQ9 Whole genome shotgun sequence assembly, contig_309 (Fragment) n=1 Tax=Sordaria macrospora RepID=D1ZVQ9_SORMA Length = 214 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 19/176 (10%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID----GK--EKILTVGK 54 MLT +I+AAKP+E Y+++D L+L+V +G K W++ Y GK +K LT G Sbjct: 34 MLTDAKIKAAKPRETAYKMVDSAQLFLHVTPAGGKHWRMNYTFGKNAAGKPAQKTLTFGP 93 Query: 55 YPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 YP +TL EAR K A+ + G DP + + + W+E +K +WS +A Sbjct: 94 YPGVTLVEARQKRDAAKALLRDGRDP-------------AIVARRWFELRKAIWSPVHAD 140 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 ++ + + D+ P IG L + I+ +L ++ E RGA+E A++ R+R ++F Y Sbjct: 141 DVLRSLERDVFPAIGALPLSAIDSPMILALLNVVEQRGAVETAHRLRQRISDIFVY 196 >UniRef50_B2U8E1 Integrase family protein n=9 Tax=Proteobacteria RepID=B2U8E1_RALPJ Length = 417 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 175/390 (44%), Gaps = 41/390 (10%) Query: 14 EKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 + P + DG L+ + +G + W ++ + G+ + + +G ++L AR +A R Sbjct: 18 DAPGQYPDGGNLHFQISATGSRSWIFKFTLRGRSREMGLGPLSSVSLAAARAEAAKCRDL 77 Query: 74 ISVGIDPVKAKKA--------SSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDI 124 + GIDP++A+ A +S F ++ + W + +A + Sbjct: 78 LREGIDPIEARNAEQRKRALETSGPRLFRVASADYISQHRAGWKNAKHAQQWENTLATYA 137 Query: 125 LPIIGGLEIQDIEPMQLLEVIR---------RFEDRGAMERANKARRRCGEVFRYAIVTG 175 PI+G +++D++ ++ V++ F RG +E A + G Sbjct: 138 NPILGDQDVRDVDTAMIVRVLQPIWISKRETAFRLRGRLECILDAEKALGH--------- 188 Query: 176 RAKYNPAP-----DLADAMKGYRK--KNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 R NPA D + RK K+ P LP ++P F + L + S ++ +L Sbjct: 189 REGENPARWRGHLDKLLPKQNRRKKIKHHPALPWQELPEFMRELRAVADSTARMLEHLIL 248 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 TA+RT+E+ + + R+ T+ MK VPM+D++VEL+T ++ Sbjct: 249 --TAVRTQEVLYARPEEFAMDYRVWTVPGERMKMELPLRVPMADRLVELVT--EAMKGAR 304 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI-EVQ 347 +++ GR K KP A+L V++++GY G + HGFR F + E AD++ E Sbjct: 305 DGWLYPGRK-KGKPYSNMAMLKVLERMGY-GHITVHGFRSTFRDWVAECTEYADSLAEKA 362 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 LAHA Y L++RR+MM WA Sbjct: 363 LAHAIQNESEAAYRRGDMLERRRKMMSDWA 392 >UniRef50_D1DCL4 Predicted protein n=8 Tax=Neisseria gonorrhoeae RepID=D1DCL4_NEIGO Length = 356 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/340 (27%), Positives = 151/340 (44%), Gaps = 33/340 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT KQIEAAK K +L DG GLYL + +G K W++RY+ G EK L +G YP ++L+ Sbjct: 7 LTQKQIEAAKADGKQSKLADGGGLYLLLHPNGSKYWRMRYRHGGCEKTLALGVYPAVSLK 66 Query: 62 EARDKAWTARKDISVGIDPV--KAKKASSNNNSFSAIYKEWYEHKK----------QVWS 109 +AR+ A AR + GIDPV + + S I + WY ++ S Sbjct: 67 QARELARAARAQTAAGIDPVAEHHRTRPGSGRSLPEIARAWYGSRQGQRADNTLEGDRRS 126 Query: 110 VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 + Y T+ K D I DI + + I A + + +++ Sbjct: 127 LAYLTDYYKDNTD----------INDITTAGVSKFIEHLNRINIPACARRTVQILAQIWD 176 Query: 170 YAIVTG---RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSG-SIVSLIAT 225 YA+ G + NPA + + K P + D++P F + L T + Sbjct: 177 YAVQRGIITDERRNPATTARPLLNTSKPKPQPHIRPDELPDFYRTLQTAHDLHPYARPLL 236 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 + T R L S W+++D R+ I A+ MK + VP+SD VE+L L + T Sbjct: 237 LLAALTVPRPSALLSARWQDIDLTARLWHIPAADMKTKHPFTVPLSDWAVEILRELHTQT 296 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLV------IKQIGYEG 319 + +F G ++KP + + I+++GY+G Sbjct: 297 G-DNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDG 335 >UniRef50_C3MAV8 DNA integration/recombination/invertion protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAV8_RHISN Length = 429 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 105/415 (25%), Positives = 181/415 (43%), Gaps = 46/415 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LTVK IEA K + DG GLYL V +G K W +RY+ GK + +T+G +P ++ Sbjct: 7 LTVKSIEAIKAGSSRREIPDGALQGLYLIVQTTGVKSWAVRYRHAGKPRKMTLGGFPAIS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAK-----KASSNNNSFSAIYKEWYEHKKQVWS-VGYA 113 L +AR++A A + +S G DP K K ++ + A+ E+ V + Y Sbjct: 67 LSDAREEARKALRMVSEGRDPATEKAEQEPKRPAHMDLMPALLDEFVTRHVAVKNRPSYV 126 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 E ++ + ++ P ++ + +L+++ DRG+ AN+ R + F +A+ Sbjct: 127 RESKRIVEKNLKPKWKQKLVKTVTKRDVLKLLDEIVDRGSPIMANRVRALLSKFFAWAM- 185 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAF---NKALATFSGSIVSLIATKVLRY 230 R + +P ++ K L ++I + LA G +V K+L Sbjct: 186 -ERDIVDASPVVSIKAPSEEKTRDRILTDEEIRFLWLAAEKLAYPFGPVV-----KLLLL 239 Query: 231 TALRTKELRSMLWKNVDFE--NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI---- 284 TA R E+ LW ++ E N++ I K +K H VP++ +E++ L I Sbjct: 240 TAQRRTEVSDALWDELELEGNNQLWVISVDRAKNKKEHFVPLTASALEIIEGLPKIKPAE 299 Query: 285 ---TKPVSEFVFAGRN-----DKKKPICENAVLLVIKQIGYEGLE----------SGHGF 326 KP+ F G+ K K + +L + ++ E E + H Sbjct: 300 DEKAKPIYLFTTTGKTPVSGFSKAKTQLDGEMLAIARKEAEERGEDPEGISIEPWTYHDL 359 Query: 327 RHEFSTIMNEHEWPADAIEVQLAHANGGSVRG---IYNHAQYLDKRREMMQWWAD 378 R ++ M P +E L H GS++G +YN Y +++R + WAD Sbjct: 360 RRTAASGMARLSVPVHIVEAVLNH-RSGSIKGVAAVYNRYDYAEEKRAALTAWAD 413 >UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae RepID=A9HQA6_9RHOB Length = 398 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 178/383 (46%), Gaps = 41/383 (10%) Query: 21 DGNGLYLYVPVSGKKVWQLRYKIDGKEKI--------LTVGKYPLMTLQEARDKAWTARK 72 DGNGLYL V SG + W +R + G++ +G ++T+ +AR++A R+ Sbjct: 22 DGNGLYLVVDPSGARRWIVRVVVKGQKNKKGAPLRTDFGLGGADIVTINQARERALEYRR 81 Query: 73 DISVGIDP-VKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGG 130 G++P AK+ +F K+ + + W + + + D P IG Sbjct: 82 MAKTGLNPRFNAKREIP---TFEEFAKQVHIDRLPTWKNAKHGQQWINTLRDYAFPKIGR 138 Query: 131 LEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPAPDLADA- 188 + I + +++ + E A + +R V A G R NP + +A Sbjct: 139 MPIDSVNQPEVMMCLAPIWT-AKHETAKRLAQRIKTVLDVARSKGFRDGENPVTAIKEAH 197 Query: 189 ----MKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL---RTKELRSM 241 +KG + + + +PAF L + ++ K L +T L RT E+ Sbjct: 198 ALPKVKG-KVNHHKAMHWRDVPAFYSDLRGRNA-----MSAKALMFTCLTGSRTGEVLGT 251 Query: 242 LWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKK 301 W +D + R+ T A MK + H VP++D+++ ++ L ++ S++VF G+ + + Sbjct: 252 QWGEIDLDARVWTCPAIRMKTGEDHRVPLTDEMLSIIEPLRAMQ---SDYVFEGQK-RHR 307 Query: 302 PICENAVLLVIKQIGYEGLESGHGFRHEF----STIMNEHEWPADAIEVQLAHANGGSVR 357 P+ ++L++++++ EG+ + HGFR F S + N P + E+ L+H G V Sbjct: 308 PLSNMSMLMLLRRMQVEGV-TVHGFRSTFRDWASDVANA---PREVSEMSLSHLVGSDVE 363 Query: 358 GIYNHAQYLDKRREMMQWWADWL 380 Y + LD+RR +M+ W++++ Sbjct: 364 RAYARSDLLDRRRALMERWSNYV 386 >UniRef50_A5ELC2 Putative prophage integrase n=2 Tax=Bradyrhizobium RepID=A5ELC2_BRASB Length = 408 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 105/395 (26%), Positives = 171/395 (43%), Gaps = 28/395 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVG--KYPLMT 59 +T K + P E P GN LYL V SG + W RY+ +G K + G K + Sbjct: 10 ITAKNYLSVGPGEYPC----GNNLYLIVTPSGGRRWAFRYQRNGIVKKMGFGSAKETGLK 65 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L EARDKA A + ++ G DP + + S + E+ E +Q + G + A+ Sbjct: 66 LSEARDKAIDALRLLAKGTDPREHRDDEKRRTQGSRRFGEFAEEWRQTYETGMRHKAARA 125 Query: 120 FDDDILPIIG----GLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 I+ +I + +IE ++ V+ + R+ AR+ ++ AI Sbjct: 126 KLKRIVQVICRPLHKHWVHEIETAHVVNVLMPIWQQPETSRS--ARQIIKKILDAAIAHN 183 Query: 176 -RAKYNPAPDLADAM---------KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIAT 225 R K NPA D A + +G + + +PAF L+ S S A Sbjct: 184 LRPKDNPA-DWASRLQPIMPRQRRRGTIRGGHKAMDYQDLPAFMHKLSAISTQ--SARAL 240 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 +V+ T RT E+++M W +D +N I + K ++ P+ Q + L + Sbjct: 241 EVIILTLGRTAEVQTMRWAQLDLDNGIWDLGFLGTKNERLKRTPLPRQTLAYLREAYD-S 299 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAI 344 + EFVF GR+ K+P+ +L +K++ + + HGFR F T E + + + Sbjct: 300 RVNDEFVFPGRS-LKRPMSNMTMLKYLKELTGDDSLTVHGFRTTFRTWAQEQTHFEEEIV 358 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADW 379 E L H G Y + L KR +MQ +AD+ Sbjct: 359 EHCLHHITGDDAEKAYKRGEALKKRLHVMQTFADY 393 >UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7T3_LARHH Length = 416 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 102/416 (24%), Positives = 177/416 (42%), Gaps = 51/416 (12%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPV----SGKKVWQLRYKIDGKEKILTVGKYP 56 +LT +Q +P +K GL+L +P+ +G+ +++ K + L +GKYP Sbjct: 3 VLTDRQAANIRPTDKAKAHGGVVGLWL-IPLKEKGTGRWIFRFTSPTSKKRRDLGLGKYP 61 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSA---IYKEWYEHKKQVWSVGYA 113 +T+++A + AR + GIDP+ K+ + +++ H + S G++ Sbjct: 62 AITIKQAGELGEAARLLVLQGIDPIDHKREQEAAAEAANERITFEQAAIHTHETLSPGWS 121 Query: 114 TELAKM-----FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAM---------ERANK 159 A + P IG + D+ +RR D A+ E A + Sbjct: 122 NRHASADWINSLRRHVFPKIGDKPVADL--------VRR--DFAAVLLPIWLVLPETAAR 171 Query: 160 ARRRCGEVFRYAIVTGRAKYNPAPDLADAM------KGYRKKNFPFLPADQIPAFNKALA 213 R+R V + + N + K R+++ P +P +PAF A Sbjct: 172 VRQRMQTVMEWCLARDLIAANQCDSALSRLLPKQPSKAEREEHHPAMPWRLLPAFVAA-H 230 Query: 214 TFSGSIVSLIATKVLRY---TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPM 270 G VS +A +L + TA R+ E+R M+W VD ++ TI MK H VP+ Sbjct: 231 LGEGRPVS-VARPMLEFLILTAARSGEVRGMVWDEVDLSAKVWTIPGERMKAGATHQVPL 289 Query: 271 SDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESG-----HG 325 SD+ + +L P S VF ++ + + + + + ++ G HG Sbjct: 290 SDRAMAILRQQRE-RHPFSAMVFP--PNRGRVVSDMTLTRYLHEVDAPSDTEGRHATVHG 346 Query: 326 FRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 FR F EH +P + E LAH V Y+ + L++RR +MQ WAD+++ Sbjct: 347 FRSTFKDWAIEHGYPGELSEKALAHMIKNKVEAAYHRSSQLEQRRALMQAWADYVE 402 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV 474 e-132 UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX 407 e-112 UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronos... 378 e-103 UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 Re... 375 e-102 UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp... 373 e-102 UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio s... 373 e-102 UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria... 372 e-101 UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepI... 363 6e-99 UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteob... 363 8e-99 UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root Rep... 362 1e-98 UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadacea... 361 2e-98 UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4S... 360 3e-98 UniRef50_Q2T016 Site-specific recombinase, phage integrase famil... 359 1e-97 UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio... 359 1e-97 UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VM... 358 2e-97 UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfo... 357 4e-97 UniRef50_D0W4G5 Site-specific recombinase, phage integrase famil... 356 8e-97 UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomo... 355 2e-96 UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio R... 353 8e-96 UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae R... 350 4e-95 UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochl... 350 4e-95 UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomon... 350 5e-95 UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacter... 350 5e-95 UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria Re... 349 2e-94 UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio ... 348 2e-94 UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella fer... 347 3e-94 UniRef50_C0N6F7 Site-specific recombinase, phage integrase famil... 346 7e-94 UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae R... 345 2e-93 UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobac... 344 4e-93 UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli R... 343 8e-93 UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 342 2e-92 UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacte... 341 3e-92 UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enter... 341 3e-92 UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID... 340 4e-92 UniRef50_B4X5T7 Site-specific recombinase, phage integrase famil... 338 2e-91 UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=... 338 3e-91 UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovoran... 337 4e-91 UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas flu... 337 4e-91 UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter ... 337 5e-91 UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholde... 337 6e-91 UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobact... 337 6e-91 UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammapro... 336 1e-90 UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea... 335 1e-90 UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus p... 335 2e-90 UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola... 334 3e-90 UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria R... 333 5e-90 UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholde... 333 5e-90 UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobac... 333 7e-90 UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. ... 332 1e-89 UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas inter... 331 3e-89 UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriace... 330 4e-89 UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophil... 330 7e-89 UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTA... 329 1e-88 UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholde... 329 1e-88 UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria Rep... 328 1e-88 UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thio... 328 2e-88 UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromon... 328 2e-88 UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp.... 328 3e-88 UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_S... 327 3e-88 UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophi... 327 4e-88 UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_A... 327 5e-88 UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_P... 326 7e-88 UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombina... 326 7e-88 UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepI... 325 2e-87 UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria ... 325 2e-87 UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillu... 325 2e-87 UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomo... 325 2e-87 UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobac... 324 3e-87 UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillu... 324 3e-87 UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5... 324 3e-87 UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, pha... 323 5e-87 UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteria... 323 6e-87 UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804... 322 1e-86 UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium ... 322 1e-86 UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammapro... 321 3e-86 UniRef50_B6BKY5 DNA integration/recombination/inversion protein ... 321 3e-86 UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalole... 320 5e-86 UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellacea... 320 8e-86 UniRef50_A4VPC8 Site-specific recombinase, phage integrase famil... 319 8e-86 UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacte... 319 1e-85 UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria ... 319 1e-85 UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp... 318 3e-85 UniRef50_Q4K6S7 Site-specific recombinase, phage integrase famil... 317 3e-85 UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacte... 316 9e-85 UniRef50_A6QCY9 Site-specific recombinase, phage integrase famil... 315 1e-84 UniRef50_B7I6Z3 Site-specific recombinase, phage integrase famil... 313 9e-84 UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IG... 312 2e-83 UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrop... 312 2e-83 UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BV... 311 3e-83 UniRef50_A7H0X5 DNA integration/recombination/inversion protein ... 310 4e-83 UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID... 310 5e-83 UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Si... 310 6e-83 UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaprote... 310 6e-83 UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingell... 309 9e-83 UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_... 308 2e-82 UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=... 308 2e-82 UniRef50_B9D1P3 DNA integration/recombination/inversion protein ... 308 2e-82 UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root Rep... 308 2e-82 UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales ... 307 6e-82 UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP13... 306 7e-82 UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion p... 306 9e-82 UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157... 306 1e-81 UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix chol... 306 1e-81 UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 305 1e-81 UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Vermineph... 305 2e-81 UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enteroba... 305 2e-81 UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonad... 305 2e-81 UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria ... 305 2e-81 UniRef50_B9NUX0 Site-specific recombinase, phage integrase famil... 303 5e-81 UniRef50_Q0C1T8 Site-specific recombinase, phage integrase famil... 303 7e-81 UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis ... 302 2e-80 UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepI... 302 2e-80 UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae ... 301 3e-80 UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID... 299 1e-79 UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 299 1e-79 UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni C... 298 3e-79 UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcu... 298 3e-79 UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobac... 296 9e-79 UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetoba... 296 1e-78 UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZ... 296 1e-78 UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria ... 295 1e-78 UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C... 292 1e-77 UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepI... 292 1e-77 UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacte... 292 1e-77 UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumann... 292 2e-77 UniRef50_A7H3V7 Putative site-specific recombinase, phage integr... 292 2e-77 UniRef50_C8NCE3 Phage integrase family site-specific recombinase... 292 2e-77 UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE4... 290 8e-77 UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111... 289 1e-76 UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydroba... 288 2e-76 UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=... 288 2e-76 UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobact... 288 2e-76 UniRef50_B8F737 Phage integrase family site specific recombinase... 286 8e-76 UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family... 286 9e-76 UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butz... 286 1e-75 UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family... 285 2e-75 UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJ... 285 2e-75 UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatu... 285 2e-75 UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EV... 284 5e-75 UniRef50_C9M6R5 Site-specific recombinase, phage integrase famil... 283 6e-75 UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO 283 1e-74 UniRef50_C8PFJ4 DNA integration/recombination/inversion protein ... 283 1e-74 UniRef50_A6Q4N1 Site-specific recombinase, phage integrase famil... 282 1e-74 UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3... 282 2e-74 UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family... 279 1e-73 UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella Rep... 277 4e-73 UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphi... 277 5e-73 UniRef50_A7JZW2 Site-specific recombinase, phage integrase famil... 276 1e-72 UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integras... 275 2e-72 UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 R... 275 2e-72 UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium ML... 275 3e-72 UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresis... 271 2e-71 UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphil... 271 2e-71 UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia... 270 8e-71 UniRef50_D0CDZ4 DNA integration/recombination/inversion protein ... 269 1e-70 UniRef50_D1Y3S1 Site-specific recombinase, phage integrase famil... 268 2e-70 UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ... 268 2e-70 UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family... 267 6e-70 UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholde... 266 9e-70 UniRef50_Q0BR52 DNA integration/recombination/inversion protein ... 266 1e-69 UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus t... 265 2e-69 UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultu... 265 2e-69 UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=... 265 3e-69 UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium ... 264 3e-69 UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0... 264 4e-69 UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepI... 263 9e-69 UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella fer... 263 1e-68 UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU 261 2e-68 UniRef50_B5J5X2 Site-specific recombinase, phage integrase famil... 260 7e-68 UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria Rep... 259 1e-67 UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 ... 258 2e-67 UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM40... 258 2e-67 UniRef50_B5J7B6 Site-specific recombinase, phage integrase famil... 258 3e-67 UniRef50_Q7MPT5 Site-specific recombinase, phage integrase famil... 257 5e-67 UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteur... 257 5e-67 UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanell... 255 2e-66 UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=... 255 3e-66 UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria ... 252 1e-65 UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobac... 252 2e-65 UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae... 252 2e-65 UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis ... 251 2e-65 UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12... 251 2e-65 UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium ... 251 3e-65 UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio... 251 3e-65 UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9... 250 5e-65 UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 250 6e-65 UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepI... 250 6e-65 UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RK... 249 2e-64 UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas inter... 248 2e-64 UniRef50_B2TTV9 Site-specific recombinase, phage integrase famil... 248 2e-64 UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella si... 248 4e-64 UniRef50_B9KC61 Site-specific recombinase, phage integrase famil... 247 4e-64 UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=... 247 5e-64 UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter a... 247 6e-64 UniRef50_A3JW30 Site-specfic recombinase, phage integrase family... 246 8e-64 UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QA... 246 8e-64 UniRef50_Q92LG2 Phage-related integrase n=1 Tax=Sinorhizobium me... 246 1e-63 UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein ... 246 1e-63 UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurel... 246 1e-63 UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3... 246 1e-63 UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter... 245 2e-63 UniRef50_B5J8B6 Site-specific recombinase, phage integrase famil... 245 2e-63 UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria... 245 2e-63 UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter l... 245 2e-63 UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaprot... 245 3e-63 UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltic... 244 4e-63 UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacteriu... 243 6e-63 UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacteriu... 243 9e-63 UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillu... 243 1e-62 UniRef50_C3MAV8 DNA integration/recombination/invertion protein ... 243 1e-62 UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1... 242 2e-62 UniRef50_B4WZP4 Site-specific recombinase, phage integrase famil... 242 2e-62 UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydroba... 242 2e-62 UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas put... 242 2e-62 UniRef50_B3AX37 Site-specific recombinase, phage integrase famil... 242 2e-62 UniRef50_Q74H29 Integrative genetic element Gsu32, integrase n=1... 241 2e-62 UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crun... 241 3e-62 UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8... 241 5e-62 UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuro... 240 6e-62 UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovor... 239 1e-61 UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp... 239 1e-61 UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteri... 239 2e-61 UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadec... 238 2e-61 UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus... 238 2e-61 UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=... 238 2e-61 UniRef50_B9R123 Site-specific recombinase, phage integrase famil... 238 3e-61 UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus... 238 3e-61 UniRef50_B8IIS8 Integrase family protein n=9 Tax=Alphaproteobact... 238 3e-61 UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodoba... 238 3e-61 UniRef50_B5QDA8 Phage integrase family protein n=1 Tax=Salmonell... 237 4e-61 UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobial... 236 7e-61 UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria ... 236 7e-61 UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacter... 236 9e-61 UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP... 236 1e-60 UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucle... 236 1e-60 UniRef50_Q98MP8 Probable prophage integrase n=2 Tax=Proteobacter... 235 2e-60 UniRef50_C5F036 30S ribosomal protein S15 n=3 Tax=Campylobactera... 234 3e-60 UniRef50_A3VAJ4 Site-specific recombinase, phage integrase famil... 234 5e-60 UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodoba... 234 5e-60 UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobac... 233 8e-60 UniRef50_Q39TC0 Phage integrase n=1 Tax=Geobacter metallireducen... 231 3e-59 UniRef50_A4BQA0 Prophage CP4-like integrase n=1 Tax=Nitrococcus ... 230 7e-59 UniRef50_B5IXF4 Site-specific recombinase, phage integrase famil... 229 9e-59 UniRef50_C3MF92 Phage integrase-like protein contains catalytic ... 229 9e-59 UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacte... 229 1e-58 UniRef50_A1WQF8 Phage integrase family protein n=1 Tax=Vermineph... 228 4e-58 UniRef50_C6UP78 Integrase n=13 Tax=Escherichia coli O157:H7 RepI... 227 5e-58 UniRef50_B4W6V7 Site-specific recombinase, phage integrase famil... 227 7e-58 UniRef50_B3R3M6 Prophage integrase n=4 Tax=Bacteria RepID=B3R3M6... 226 7e-58 UniRef50_A5G635 Phage integrase family protein n=1 Tax=Geobacter... 226 2e-57 Sequences not found previously or not previously below threshold: >UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV Length = 385 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 381/384 (99%), Positives = 383/384 (99%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL Sbjct: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWY+HKKQVWSVGYATELAKMF Sbjct: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYDHKKQVWSVGYATELAKMF 120 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN Sbjct: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 Query: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS Sbjct: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 Query: 241 MLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKK 300 M WKNVDFENRIITIDASVMKGRKIHVVPMSDQV+ELLTTLSSITKPVSEFVFAGRNDKK Sbjct: 241 MQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVIELLTTLSSITKPVSEFVFAGRNDKK 300 Query: 301 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY 360 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY Sbjct: 301 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY 360 Query: 361 NHAQYLDKRREMMQWWADWLDEKV 384 NHAQYLDKRREMMQWWADWLDEKV Sbjct: 361 NHAQYLDKRREMMQWWADWLDEKV 384 >UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX Length = 394 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 187/388 (48%), Positives = 268/388 (69%), Gaps = 7/388 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ AKPK+KPY+L DG G+YL + +G K W+++Y+ GKEK+L++G YP +TL Sbjct: 3 LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR+K ARK ++ G DP +AKK N+F AI +EW++ K WS+ Y E Sbjct: 63 DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYRDE 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + F+ DI P IG I +I+PM+LLE +R+ E RGA+E+ K R+RCGEVFRYAIVTG Sbjct: 123 IIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA YNPAPDLA A+ +K +FPFL A+++P F LA ++GSI++ AT+++ T +RT Sbjct: 183 RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 +ELR W+++DFE ++ I A VMK ++ H+VP+S+QV+ L L I+K VF G Sbjct: 243 QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH-HPLVFIG 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 RND +KPI + ++ VI+ +GY+G +GHGFRH STI++E + + IE+QLAH + S Sbjct: 302 RNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEK 383 +RG YNHA YLD RREMMQW+AD++D Sbjct: 362 IRGTYNHALYLDGRREMMQWYADYIDSL 389 >UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GR55_9DELT Length = 401 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 138/386 (35%), Positives = 228/386 (59%), Gaps = 5/386 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q++ KP YR+ D +G+YL V +G K+W+ +Y+ +GK K+L +GKYP ++L Sbjct: 3 LTDVQVKGLKPGSTKYRVKDKDGMYLEVTPAGGKLWRFKYRFNGKNKLLALGKYPDVSLA 62 Query: 62 EARDKAWTARKDISVGIDP--VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 +AR+K AR+ I+ G DP +K + + N+F AI EW+ KK W+ G+A ++ + Sbjct: 63 KAREKLSIARQQIAEGKDPAYIKKIEKAEKENTFKAITDEWWRAKKSTWTPGHAEKVYRR 122 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + D+LP + I++I ++LEV+++ E RG + A + + C +F +A+ +GRA++ Sbjct: 123 LEIDVLPYLKDRPIKEITAREILEVLKKAEARGVTDTAYRLAQMCSNIFIFALASGRAEH 182 Query: 180 NPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 NPA D++ A+ + K N P + D+I A+ F+GS L A K+ +R EL Sbjct: 183 NPAADISKALTAHPKTNRPAITEPDEIKELLLAIDGFTGSYTVLCALKIAILVFVRPGEL 242 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W ++F+ + + + MK ++ H+VP+S Q V++L + +T +VF Sbjct: 243 RQASWAEINFDEALWYVPSQRMKMKREHLVPLSGQAVKILKDIHPLTG-AGHYVFPSIRT 301 Query: 299 KKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVR 357 +P+ EN + ++++GY HGFR ST ++E WP+D IE QLAH + +R Sbjct: 302 NSRPMSENTLNAALRRLGYPQEKLCAHGFRTMASTRLHEMGWPSDIIEFQLAHVDQNKIR 361 Query: 358 GIYNHAQYLDKRREMMQWWADWLDEK 383 GIYN A+YLD+R +MMQ WAD+LD+ Sbjct: 362 GIYNRAEYLDQRTKMMQAWADYLDDL 387 >UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P090_AZOSE Length = 402 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 140/389 (35%), Positives = 208/389 (53%), Gaps = 7/389 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K I K KP ++ DG GLYL V +G K+W+ R+++ GKE + +G YP ++L Sbjct: 3 LTDKAIRGVKGGAKPVKMADGGGLYLEVTPAGGKLWRYRFRLAGKENVFAIGAYPRVSLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +AR AR + G +P ++ + N+F+ + EWY+ K WS G+ Sbjct: 63 DARKARDEARDLVKQGFNPSHYRQQAKQAVIDENLNTFAPVADEWYQSKVDSWSKGHRHH 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D DILP IG L I+ I L +V+++ RGA RA AR+ G VF AI+T Sbjct: 123 VRTILDKDILPRIGKLPIRSITSPLLHDVMKKIVARGATTRAILARQIMGSVFNLAILTH 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA NPA L + ++ L + F + L+ ++G + IA ++L TA+R Sbjct: 183 RADTNPAEPLKRQIARCVTEHHRHLEERDVGDFLRKLSDYTGHATTRIALQLLMLTAVRP 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 E+ W D + + TI MK RK H+VP+S+Q V+LL L IT + F+F Sbjct: 243 GEVCGARWAEFDIDGQNWTIPKERMKTRKPHIVPLSNQAVDLLKELEPITGDTA-FLFPS 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 + K + + ++ + ++GY S HG R FST++N + +D IE QLAH G Sbjct: 302 QGTKTQTMPTQSIRNAVVKLGYADKFSPHGARGTFSTMLNGRGYNSDWIERQLAHDEGNR 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKV 384 VR YNH QYL +RR+M+Q WAD LDE Sbjct: 362 VRASYNHMQYLPERRKMLQEWADLLDELR 390 >UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJ08_9PROT Length = 418 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 9/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+ AKP+ KPYR+ DG G+Y+ V +G K W++ Y+ K+K L +G YP +TL Sbjct: 3 LTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAYRFADKQKTLALGVYPDVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +ARD+ ARK ++ G DP K++ NSF I +E++ K +WS +A + Sbjct: 63 DARDRRNEARKLLANGADPGAVKQSQKKQAKIAASNSFELIAREFHSLKTPMWSTNHAAD 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 K + +I P G I +I+ +L+ IR E R A E A + +R V YAI TG Sbjct: 123 WIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEVAARVLQRVRAVCAYAIATG 182 Query: 176 RAKYNPAPDLADAMKGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA++NPA ++ A+ K K+F L ++P F +A+A + ++ AT +L T +R Sbjct: 183 RARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLMLTFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T E+R W D + ++ I A MK R+ H+VP++ Q +E+L L +T E +F Sbjct: 243 TGEVRGAKWCEFDLDAKLWKIPAERMKSREPHIVPLAKQAIEILGELHPLTGH-GEHLFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEW-PADAIEVQLAHANG 353 R K I EN VL VI+++GY+G +GHGFR ST +N D IE QLAH Sbjct: 302 NRTGNGKVISENTVLKVIERLGYKGRMTGHGFRTIASTYLNGVGMIRPDVIEAQLAHTEA 361 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 + R YN A Y++ R MMQ+WAD LD Sbjct: 362 NATRAAYNRANYMEYRAAMMQFWADTLDAM 391 >UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L516_9DELT Length = 417 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 138/394 (35%), Positives = 217/394 (55%), Gaps = 15/394 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AK +KP ++ DG GL+L V +G K+W+ +Y DGKEK+L +GK+P + L+ Sbjct: 8 LTDVAIRNAKAADKPVKMFDGAGLFLQVTPTGGKLWRFKYLFDGKEKLLALGKWPDVGLK 67 Query: 62 EARDKAWTARKDISVGIDPVKAKK---------ASSNNNSFSAIYKEWYEHKKQVWSVGY 112 AR + AR ++ G+DP + +K A N N+F+ + ++W+ + +VWS G+ Sbjct: 68 MARQRRDEARALVAQGVDPSEKRKQDRADAEGQAVENANTFAVVARDWHAKQVKVWSEGH 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A ++ + + P+ G + I + +L +R ED+G E A + R+ C VF +AI Sbjct: 128 AAKILARMEQHLFPVFGNIPITTLRAPAILPTLRDIEDKGNHETAKRLRQYCEAVFTFAI 187 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TG A+ N DL A+ R N P + + +A+ + GS V++ A ++ Sbjct: 188 STGIAERNVGADLRGALAPCRATNRPAIIDPKGVAQLLRAIDGYQGSPVTVAALRLAPLV 247 Query: 232 ALRTKELRSMLWKNVDFE---NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 +R ELR W +D + +I A MK R+ HVVP+S Q V+++T + S+T Sbjct: 248 FVRPGELRQAEWSEIDLDAADGPRWSIPAEKMKMRRDHVVPLSKQAVDIITEIYSLTG-Q 306 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 ++F K + + A+ ++++GYE G HGFR ST++NE W +D IE Q Sbjct: 307 DRYLFPCNRTKGRCMSNMALNAALRRMGYEQGEMCAHGFRAMASTLLNELGWNSDLIERQ 366 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAHA S+R YN A+YL +RR MMQ WAD+LD Sbjct: 367 LAHAERNSIRAAYNRAEYLPERRRMMQAWADYLD 400 >UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria RepID=A4JAY4_BURVG Length = 405 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 147/389 (37%), Positives = 225/389 (57%), Gaps = 8/389 (2%) Query: 2 LTVKQIEAAKPKEKPY-RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT + A+ E +L DG GLYL + SG K W+L+Y+ +GKE +LT G YP +L Sbjct: 6 LTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPATSL 65 Query: 61 QEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 +AR + A++ ++ G +P K +A + N+F A+ EWYE ++ WS +A Sbjct: 66 ADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATWSASHAN 125 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + K D ++ P+IG I I LL V+RR E R A E A K + CG+VFRYA+ T Sbjct: 126 RVKKQLDREVFPLIGQRPISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVFRYAVAT 185 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA+ +P+PDL A+K K+ + ++P +++A++ G + +A + L T +R Sbjct: 186 SRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIASYEGEPETRLALRFLALTFVR 245 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T ELR W +D E R I A MK R++H+VP+++Q + LL+ L ++T ++F Sbjct: 246 TIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQAIALLSELRALTGHR-RWLFP 304 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + + EN +L + ++GY +GHGFR STI+NE + +D IE QLAH+ Sbjct: 305 NSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGFNSDWIERQLAHSEQD 364 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEK 383 VR YNHA+YL +R MMQWWAD+LD++ Sbjct: 365 GVRAAYNHAEYLSERHRMMQWWADYLDKQ 393 >UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepID=C9NQJ4_9VIBR Length = 415 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 121/392 (30%), Positives = 204/392 (52%), Gaps = 9/392 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59 LT +I+++KPK+K Y L DG+GL L + +G K W L Y K L++GKYP ++ Sbjct: 8 LTPTKIKSSKPKDKEYNLFDGDGLRLRIKPNGSKHWILNYYRPSNRKRANLSLGKYPDLS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYA 113 L AR A++ ++ GIDP + +K + ++F + +W+E KK + YA Sbjct: 68 LANARKMTLEAKELLAQGIDPQEERKRHQLEQKANHEHTFINVTTKWFEIKKDDVTPDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + I P + + ++DI Q++E+++ E +G++E + +R EV YA Sbjct: 128 VDIWRSLELHIFPQLSDVPVRDITAPQVIELLKPIEAKGSLETVKRLAQRLNEVMNYATN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G + NP + A K +K+N L ++P A+A S + + +T Sbjct: 188 CGLVQANPLTGIKAAFKKPKKENMAALTPAELPELMGAIANASIKRTTRCLIEWQLHTMT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W+ +D++ ++ TI MK R+ H +P+++Q++ELL + I+ EF+F Sbjct: 248 RPSEASGARWEEIDWDEKVWTIPPERMKKRREHRIPLTEQMLELLEVIKPISGHR-EFIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 D KKP + +K++G+ G HG R ST +NE + D IE LAHA+ Sbjct: 307 PSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFEPDLIEAALAHADD 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 VR YN YL++RR MM WW+ ++E + Sbjct: 367 NQVRSAYNRTDYLERRRPMMCWWSGHIEEAAK 398 >UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteobacteria RepID=INTA_ECOLI Length = 413 Score = 363 bits (931), Expect = 8e-99, Method: Composition-based stats. Identities = 124/387 (32%), Positives = 195/387 (50%), Gaps = 9/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMT 59 LT +I+AAKPK+ Y+L DG+GL L + SG K+WQ RY + + G YP ++ Sbjct: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR ++ ++ IDP + +K + N+F + + W+ KK + YA Sbjct: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + DI P IG + I +I+ L++ ++ + RGA+E + +R EV YA Sbjct: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 TG P+ ++ A + +KKN P + DQ+P + T S S+ + T Sbjct: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W +DF I A+ MK + H VP+SD + +L + ++ EF+F Sbjct: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR-EFIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 R +P+ V +K+ G G+ HG R ST +NE +P D IE LAH + Sbjct: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 VR YN + YL++RR MMQWWAD + Sbjct: 367 NEVRRAYNRSDYLEQRRPMMQWWADLV 393 >UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root RepID=A1BGX1_CHLPD Length = 419 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 131/390 (33%), Positives = 211/390 (54%), Gaps = 14/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q+ AKP EK Y+L DG GL+L V SG K+W+ +Y+ DGK+K+L +G+YP ++L Sbjct: 8 LSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQYPEISLA 67 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR + AR ++ DP K +A + +SF + +EW+ VWS G+A Sbjct: 68 NARKRREEARTLLANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVWSPGHALT 127 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D+ P IG + +I + ++ + E RGA+E A + + CG+VFRYA+ TG Sbjct: 128 VMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQVFRYAVATG 187 Query: 176 RAKYNPAPDLADAMKGYR---KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 R +++P+ L + + + ++ A+ + G+ V A ++ Sbjct: 188 RLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSALQLTPLLF 247 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R EL++M W ++DFE + +I A MK R+ H+VP+S Q + +L L T +V Sbjct: 248 VRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPATGH-GRYV 306 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNE-HEWPADAIEVQLAH 350 F GR + P+ N++ ++ +GY+ +GHGFR TI++E + D IE QLAH Sbjct: 307 FTGRGSR--PMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEHQLAH 364 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 A YN +LD RR+MMQ WAD+L Sbjct: 365 AVRDPNGRAYNRTSFLDDRRQMMQAWADYL 394 >UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadaceae RepID=B1JDS4_PSEPW Length = 402 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I A+P++K YR+ D GL L V +G K+W+LRY+ +GK K+L +G YP +TL Sbjct: 3 LTDTAIRTARPRDKLYRIADAQGLCLEVTTAGGKLWRLRYRFEGKAKMLGLGTYPSVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN-----SFSAIYKEWYEHKKQVWSVGYATEL 116 AR++ ARK +S GIDP K+ + + +EWY++ + W+ A++ Sbjct: 63 HARERRDAARKLLSQGIDPSAYKQQEKAAAEAQALTLETLAREWYDYNQPRWAPATASKA 122 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + DI P+IG +++ +L++++R+ E R A A K R+ ++FR+ + G Sbjct: 123 LQYLESDIFPLIGKRPAAEVQRPELVDLVRKIEQREAFNVARKVRQWLSQIFRFGLAKGV 182 Query: 177 AKYNPAPDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NPA DL A R ++ P + ++P + L S IA ++L TA+R Sbjct: 183 VAGNPATDLDVVAAHAPRTRHHPHVSEAELPELLEKLEAAQCDFTSKIAIRLLLLTAVRP 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D E+ TI A+ MK R+ H+VP+ Q V LL L +T F G Sbjct: 243 GELRLAPWDEFDLESATWTIPAARMKARRPHIVPLPRQAVNLLRALHELTG-TYPLAFPG 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 RND+ +P+ EN V + +GYEG ++GHGFRH ST +N + D IE QLAH + S Sbjct: 302 RNDRSRPMSENTVNKALSTMGYEGRQTGHGFRHLLSTSLNTRGYNRDWIERQLAHGDQDS 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +R YNHA YL++RREMMQ WAD +D E Sbjct: 362 IRDTYNHAHYLEQRREMMQTWADHVDALAE 391 >UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4SSF4_AERS4 Length = 404 Score = 360 bits (925), Expect = 3e-98, Method: Composition-based stats. Identities = 145/391 (37%), Positives = 216/391 (55%), Gaps = 10/391 (2%) Query: 2 LTVKQIEAAKPKEKP--YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT AK KP +L D GL+L V SG K W+L+Y+ GKEK L +G YP ++ Sbjct: 3 LTDITARQAKWSGKPNGDKLADEKGLFLLVNKSG-KYWKLKYRHGGKEKKLALGVYPEVS 61 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYA 113 L+EAR K AR+ I+ GIDP +K S + NS + +EW++ + +WS G+A Sbjct: 62 LREARAKRDEARRVIAEGIDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWSPGHA 121 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 T + + + D+ P +G + I ++ +LE +R+ E RGA E A + +R + RYAI Sbjct: 122 TRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRVSAIMRYAIQ 181 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 TGRA YNPA DL A+K ++++ P LP ++P F + L + + +A +L T Sbjct: 182 TGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLMLTMT 241 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E+R W D E I A+ MK R H+VP+S Q + +L L +T E +F Sbjct: 242 RPGEVRFARWDEFDMERAEWRIPAARMKMRTEHLVPLSRQALAVLDELHQLTGHC-ELLF 300 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 P+ EN + + ++GY+G+ + HGFR ST +NE + D IE QLAHA Sbjct: 301 PSERKLTNPMSENTLSYAMGRMGYKGIATPHGFRALASTTLNEEGFDPDVIERQLAHAER 360 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 VR Y+ A+YLD RR+++QW AD+ D + Sbjct: 361 NKVRAAYHRAEYLDDRRKLLQWLADFYDSQR 391 >UniRef50_Q2T016 Site-specific recombinase, phage integrase family n=30 Tax=Bacteria RepID=Q2T016_BURTA Length = 438 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 136/392 (34%), Positives = 208/392 (53%), Gaps = 11/392 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKP E+PYRL DG GLYL V +G + W+++Y+ DGKEK+ + G YP ++L Sbjct: 48 LTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGSRYWRMKYRFDGKEKLASFGVYPEVSLA 107 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGYATE 115 +AR ARK ++ G DP + K+ SF A+ +EW+E +K W+ YA + Sbjct: 108 QARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGWTEVYANK 167 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D P IG ++DIE +LE++R E RG E A + +R VF+Y I+TG Sbjct: 168 VINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMTG 227 Query: 176 RAKYNPAPDLADAMKGYR---KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 R NPA D+ + K+ + +IP + +A +SG V+ +A + + T Sbjct: 228 RCSRNPAADIDAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALTF 287 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 RT E+ + W D I MK R H+VP+S Q +E+L L + V Sbjct: 288 TRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRELNGNQ-RLV 346 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 F + I N +L + ++GY+ +GHGFR +T++ E + D ++ QLAHA Sbjct: 347 FYSVQGRS-HISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQLAHAE 405 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 V Y HA+YL +RR+MMQ WAD+L + Sbjct: 406 RNQVTAAYVHAEYLPERRKMMQHWADYLTQTA 437 >UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2J0_9DELT Length = 420 Score = 359 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 126/402 (31%), Positives = 206/402 (51%), Gaps = 20/402 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGK----EKILTVGKYPL 57 LT Q+ K ++K RL DG GLYL V SG K W+ +Y+ G+ EK L++G YP Sbjct: 3 LTDAQVRNVKAEDKTRRLFDGGGLYLEVAPSGGKWWRFKYRFPGQGKIQEKRLSLGTYPG 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSN----NNSFSAIYKEWYEHKKQVWSVGYA 113 + L+EAR K R+ I+ GIDP ++++ SF A+ + W+ + W+ ++ Sbjct: 63 VGLKEARAKRDEMRRQIAQGIDPANLRRSTRGSGALAGSFEAVARLWHRNNSTDWAPSHS 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 T L + + + P +G + DI L+ V+ R ++ G E A + + CG+VFRYA+ Sbjct: 123 TRLIRRLEAHVFPYLGNRPVGDITAPDLMNVLERIKNSGHTETARRIQTICGQVFRYAVQ 182 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G A+Y+P+ L + KN + ++ +A+ + G+ V A ++ Sbjct: 183 KGFAEYDPSSALKGCLGKTTAKNMATITEPAEVGRLLQAIDEYPGTQVVRCALQLAPLFF 242 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKI----------HVVPMSDQVVELLTTLS 282 +R+ ELR+ W D NR I MK R+ H+VP++ Q V++L Sbjct: 243 VRSGELRNARWDEFDLVNREWKIPVERMKMRQDEKRARQGQVGHIVPLATQAVKILEEEL 302 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPA 341 VF G + + I + + ++++GY G E + HG RH ST+++ + + Sbjct: 303 RPLTGRCALVFPGLRSRDRAISDATLTNALRRMGYTGDEMTIHGLRHMASTLLHGLGFQS 362 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 IE QLAH + +RG+YN A YL++RR MMQ WAD+L + Sbjct: 363 LVIERQLAHKDRNRIRGVYNQADYLEERRRMMQSWADYLGQL 404 >UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VMW7_9GAMM Length = 419 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 140/385 (36%), Positives = 212/385 (55%), Gaps = 6/385 (1%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ Q+ KP EK R D GLYL V SG + W+L+Y+ +G+E LT+G YP ++L Sbjct: 21 MLSDAQVRKIKPLEKKKRYADEKGLYLEVTPSGGRFWRLKYRFNGRESTLTIGSYPEISL 80 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNS----FSAIYKEWYEHKKQVWSVGYATEL 116 +AR AR + IDP K F ++ EW E +K V Sbjct: 81 AQARRARDEARIQLYSNIDPNAVKNQRLQQTDESILFKSLAMEWMEDRKAVIKETTYLRD 140 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 +F+ D+ P +G + I I+ +L ++ E RGA+E A ++ G +FR+AI G Sbjct: 141 LSVFEKDLFPALGNMPIDQIKGKDVLACAKKIEARGALEMAKRSIPLTGRIFRFAIRKGI 200 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 + +P P L +A+K + K+ L + P F + + + GS + A +++ T +RT Sbjct: 201 MENDPTPHLQEALKPRKVKHMARLDILEFPPFLERMDRYHGSPMIKTAIQLMTLTFVRTA 260 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 ELR M W +DFE ++ I A MK + H+VP+S Q +EL+ L +T ++VF Sbjct: 261 ELRMMEWDEIDFETKLWRIPADKMKMAQPHIVPLSKQAIELIEQLRPLTGN-KQYVFYNH 319 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 + K P+ NA+L VI+ +GY G +GHGFR ST ++E + DAIE+QLAH G +V Sbjct: 320 STAK-PMSSNALLCVIRTMGYNGKMTGHGFRGLASTTLHEQGYMHDAIEIQLAHRVGNAV 378 Query: 357 RGIYNHAQYLDKRREMMQWWADWLD 381 YNHAQ+LD R +MMQ W+D++D Sbjct: 379 SQAYNHAQHLDYRIKMMQEWSDFID 403 >UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV41_9DELT Length = 401 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 134/391 (34%), Positives = 215/391 (54%), Gaps = 8/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AKPKEKPY++ D GLY+ V G K+W+L+Y+ +GKE++ +G YP ++L+ Sbjct: 5 LTDTAIRTAKPKEKPYKMADSGGLYVLVNPGGGKLWRLKYRFEGKERLFAIGTYPAVSLK 64 Query: 62 EARDKAWTARKDISVGIDP-----VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 EAR +A TA++ I+ G+DP +A + + +F + +EW++ K W+ +A ++ Sbjct: 65 EARARAVTAKEMIARGVDPCAARKAAKAEAIARSRTFEVVAREWHKKKLAGWTPNHARQI 124 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + P +G I ++ L V+ + E +G +E A + + CG+V RYA + G Sbjct: 125 IRRLETLAFPDLGSRPIAELGAPDFLAVLGKVERQGHLETARRLAQICGQVTRYARLAGM 184 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 +PA L +A+ + + +I A +A+ + G + A K++ Y +R+ Sbjct: 185 IVADPASHLTEALTTKPVRLHAAITEPREIGALLRAIDDYPGDVSVSFALKIMPYVFVRS 244 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W +D + I A MK R+ H+VP++ QVV + L +IT E VF G Sbjct: 245 SELRRATWAEIDLDRAEWLIPAERMKMRRPHLVPLARQVVGMFRALHAITGNR-ELVFPG 303 Query: 296 RNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + I + +L ++++GY + HGFR ST +NE + D IE QLAHA Sbjct: 304 TASVTRCISDVGLLNALRRLGYGRDEMTVHGFRSMASTRLNEMGYRPDVIEAQLAHAERN 363 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 SVR YN AQY+++RR MMQ WAD+LD + Sbjct: 364 SVRDAYNRAQYVEERRRMMQEWADYLDSLRD 394 >UniRef50_D0W4G5 Site-specific recombinase, phage integrase family n=4 Tax=Neisseria RepID=D0W4G5_NEICI Length = 428 Score = 356 bits (913), Expect = 8e-97, Method: Composition-based stats. Identities = 138/395 (34%), Positives = 210/395 (53%), Gaps = 12/395 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +QI AKP EKPY+L DG GLYLY+ SG K+W+ + +GK K L++GKYP ++L Sbjct: 26 LNDRQIRNAKPAEKPYKLNDGKGLYLYINTSGGKLWRFDFACNGKRKTLSIGKYPTVSLA 85 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 EAR+ A TAR+ ++ G DP +AK+ N+F +I + W+ W +A Sbjct: 86 EARETAETARRMLAAGQDPSEAKQQEKEERKAAALNTFESIARRWHTDNLTRWKENHAAR 145 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F+ D+ P++G + IQ+I + ++ RG A K R G VF YA + Sbjct: 146 VLRYFETDVFPVVGAMPIQEIRVNHIKTLLDSVMARGVNNTAEKIREWAGAVFDYAALLE 205 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NPA L + N P LP +++ F L + IA ++ +R Sbjct: 206 LTESNPAHVLRRYIPSVPAGNRPALPREELTEFFCRLLLADIEPQNRIALMLIMLVFVRN 265 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRK-----IHVVPMSDQVVELLTTLSSITKPVSE 290 ELR W +DF+ R+ I A MK K H VP++D +ELL L +IT Sbjct: 266 TELRGGRWDEIDFDARLWVIPAERMKHEKTAPKPPHTVPLADWTLELLAELKAITGDT-P 324 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 ++F R K I EN + ++ +GY+G+ + HGFR S+++NE + DAIE QLAH Sbjct: 325 YLFPSRTKKDGFISENTLGKIMNNMGYKGIATPHGFRALASSVLNEQGFNPDAIERQLAH 384 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +R YN A Y+ +RREMM+W++ +L E+ + Sbjct: 385 VEENRIRAAYNRADYMTERREMMEWYSGYLRERYD 419 >UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomonas eutropha C91 RepID=Q0AH02_NITEC Length = 393 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 130/388 (33%), Positives = 209/388 (53%), Gaps = 9/388 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AAKPKEK Y+L DGNGL L + G K W+ RY + KE +L++GKYP TL Sbjct: 3 LTDSAIRAAKPKEKQYKLTDGNGLTLLIYPDGSKHWRYRYLFNEKESMLSLGKYPETTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + + GI+P +K NSF A+ + W+ H K + + Sbjct: 63 QARSIHDGYKAILKQGINPSTHRKEEKRKAIVSVENSFEAVARTWWMHWKHAKTERHVAY 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + DI P IG + + M +E++ + + RGA++ A + CG+V RYA+ G Sbjct: 123 TLRRMEADIFPFIGAKPVNTLTAMHFIELVYKVQSRGALDIAKRVLTMCGQVMRYAVQHG 182 Query: 176 RAKYNPAPDLA--DAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 ++ NPA D+ D +K +K N +P ++P + + + G ++ +A +++ T + Sbjct: 183 LSERNPAADIKPADILKKRKKVNHKRIPESELPDLLQKINQYDGQPLTRLALQLMTLTFI 242 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 RT EL W+ + F+N I MK R H+VP+SDQ + +L + ++ +F Sbjct: 243 RTSELIGGRWEEISFDNAEWRIPPERMKMRSQHIVPLSDQAITVLREIKALNSDP-VLLF 301 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 K + N ++ + +IGY+G +GHGFR ST+++E + IE+QLAHA Sbjct: 302 PSERRNGKTMSNNTIIYALYRIGYKGRMTGHGFRGLASTVLHEKNFDHKWIELQLAHAER 361 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 V YNHA YL++RR+MMQWW ++++ Sbjct: 362 DEVSAAYNHALYLEQRRKMMQWWGEYIE 389 >UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio RepID=B8J055_DESDA Length = 402 Score = 353 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 131/387 (33%), Positives = 207/387 (53%), Gaps = 6/387 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I KP K R +DG GLYL V+G K W+++Y+++GKEK L+ G +P ++L+ Sbjct: 7 LTEIKIRNIKPNGKIERFVDGEGLYLETSVAGGKHWRMKYRVNGKEKRLSFGPWPDISLK 66 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN---SFSAIYKEWYEHKKQVWSVGYATELAK 118 EAR+ A++ + +DP KK + +F I E+ EH++ VW+ + + Sbjct: 67 EAREMRDEAKRQLRESLDPSAEKKKAKQEQAAPTFRDIALEYVEHQRSVWAASHTRTVEG 126 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D+ P G I + P +L ++R+ E+R A E A++ C +F+YA+ G + Sbjct: 127 RLALDVYPAFGAKPIAAVTPQDILAMLRKIEERRAFETASRVLGFCSLIFKYAVTLGLVE 186 Query: 179 YNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +P DL A+K Y K + ++ A +A+ + GS+V A T R E Sbjct: 187 ADPCRDLRPALKPYAKGQLAAITKPKEVGALMRAIDDYKGSVVVRAALLFSALTFCRPGE 246 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 +R + W ++FE TI A MKGR H VP+S Q +E+L + T ++VF Sbjct: 247 IRHVEWAEINFEREEWTIPAEKMKGRTEHRVPLSRQALEVLHGIMPYTGSA-KYVFPTPR 305 Query: 298 DKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 +P+ EN VL ++ +GY + + HGFR ST++NE DAIE QLAH + Sbjct: 306 SNNRPLSENGVLSALRNMGYTKEQMTAHGFRSMASTLLNELGHRPDAIEAQLAHKGADKI 365 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDEK 383 R YN A+Y+ +RR +MQ WAD+L++ Sbjct: 366 RATYNRAEYMKERRNLMQAWADYLEDL 392 >UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae RepID=B9Z434_9NEIS Length = 395 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 136/387 (35%), Positives = 202/387 (52%), Gaps = 8/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 L+ +I +KP +KPY+L DG GLYL + +G K W+ RY K+ I T+G+YP ++L Sbjct: 3 LSDVKIRTSKPLDKPYKLQDGKGLYLEIRPTGAKFWRYRYWTSPTKDGIYTIGEYPDVSL 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR + R + G +P KK + + + +EW WS Y Sbjct: 63 AEARAERERVRALVKEGKNPTAEKKLDKLRSQKETATTLAVVAEEWKVVNWPHWSETYRK 122 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ K D+L G L I+++ QLL I + ++RGA A R+ G +FR+AI T Sbjct: 123 QVEKHLQRDLLDEYGELPIREVTSAQLLAAISKIDERGAPSIARLVRQWAGSIFRHAIAT 182 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA +P L A++ ++ L AD++P F KAL + G ++ +A + T +R Sbjct: 183 LRADSDPTYPLRGALRMPPTRHNAHLSADELPGFLKALDAYKGFGLTRLAVNLQMLTLVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T+ELR W D + I MK R H+VP+ Q V ++ L +T +VF Sbjct: 243 TQELRLAEWAEFDLDAAEWRIPPEKMKMRDPHIVPLPKQAVAIMRELEPLTGRR-RWVFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + + +L VI+ +GY+G +GHGFR STI++E W D IE QLAH Sbjct: 302 NVRNHDTGMTNTTILRVIEILGYKGRATGHGFRATASTILHEQGWNTDIIERQLAHLERN 361 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 V+ YNHA YL +RREM+Q WAD+LD Sbjct: 362 KVKAAYNHAGYLKERREMLQAWADYLD 388 >UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C8U1_ACAM1 Length = 399 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 134/392 (34%), Positives = 200/392 (51%), Gaps = 12/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q+ AKPK YRL DG GL+L + +G K W+ RY+I GKE ++G YP + L Sbjct: 6 LTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYRIQGKESTFSIGSYPELGLG 65 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR K AR+ ++ G++P K + N+F + EW+ K WS Y Sbjct: 66 EARAKHLEARRLVAQGLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSESYRGI 125 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D+ P +G + +I ++L VIR E RGA A+K V YA+ TG Sbjct: 126 VRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEARGANALAHKCLSIVRMVLGYAVATG 185 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 R N DL A+ K+ + ++ + +A + GS+V A ++ T +R Sbjct: 186 RCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGALTFVR 245 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK-PVSEFVF 293 ELR+M W +++ + V K H+VP++ Q +E+L TL IT S +VF Sbjct: 246 PGELRTMQWSQINWNTKEWRF--QVSKTETDHIVPLATQAIEILQTLQLITGNGTSRYVF 303 Query: 294 AGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTI-MNEHEWPADAIEVQLAHA 351 N + + NAVL ++ +G + SGHGFR T+ E + + IE QLAHA Sbjct: 304 PSANSMTRHMSNNAVLAALRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEHQLAHA 363 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 G + YN ++L++RREMMQ WAD+LDE Sbjct: 364 VRGPLGRAYNRTEFLEERREMMQAWADYLDEL 395 >UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomonas RepID=A5W5R9_PSEP1 Length = 393 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 145/386 (37%), Positives = 217/386 (56%), Gaps = 8/386 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT AKP+EK Y L D GL LYV +G K W R+ GK+ +++G YP + L+ Sbjct: 3 LTDTAARQAKPREKGYTLADSLGLTLYVAETGVKSWHFRFTWLGKQARISLGTYPEIGLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR + AR+D++ G DP ++++ +F +Y+EW E +K + Sbjct: 63 EARARRDEAREDVAQGKDPRESRREKKVERLGAKERTFRRVYEEWLEFRKGGLTESTVKV 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 ++ + D+LP G +I I+ ++ +IRR E RG++ A K R+ G+VFRYA+ G Sbjct: 123 ISNAMELDVLPAFGLRQIDSIKRADVITLIRRIERRGSITTAVKTRQWIGQVFRYAVAIG 182 Query: 176 RAKYNPAPDLADAMKGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + NP ++ + KN PFL ++PA KA+ + ATK+L TA R Sbjct: 183 MIEINPTAEMHAVTEKMAPHKNRPFLAFTEMPAIIKAIEESQSGLQLQCATKLLILTACR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E+R W +D + +I AS MK R+ HVVP+S Q VELL ++ I+ + ++VF Sbjct: 243 PAEVRKAEWSEIDLDTATWSIPASKMKMRRDHVVPLSRQAVELLRSMLPISGGL-KYVFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 R D +PI N + ++ + GY G +S HGFRH FST MN + D IE QLAHA+ Sbjct: 302 NRTDAVRPIGINYAVNLLDRCGYTGRQSPHGFRHLFSTEMNSRGYNKDWIERQLAHADSS 361 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWL 380 ++R +YNHA YL++RR+MMQ WAD + Sbjct: 362 AIRDVYNHATYLEQRRDMMQAWADLV 387 >UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacteria RepID=B4RZR6_ALTMD Length = 412 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 129/397 (32%), Positives = 214/397 (53%), Gaps = 16/397 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI+ A+ K L D GL L V +G K W+L+Y+ GK+K L +G YP ++L+ Sbjct: 3 LTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYRFQGKQKTLAIGVYPEVSLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAI------YKEWYEHKKQVWSVGYATE 115 +AR+ AR+ + IDP K+ + +S S I + W+ +K WS G+A Sbjct: 63 DAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEGHAAR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +D+ L +G I +I P ++ +++ E RGA++ A + + V R+A+ TG Sbjct: 123 IWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFAVQTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFS--GSIVSLIATKVLRYTAL 233 +NPA +L+ ++ + + LP +++P F + L + G +++ +A ++L +T + Sbjct: 183 VLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLVHTFV 242 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R EL W D E ++ I A MK + H+VP+S Q + +L + EFVF Sbjct: 243 RPGELAGARWDEFDLEEKLWRIPAHRMKMKSDHIVPLSRQALAVLENTKPFSARF-EFVF 301 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEG------LESGHGFRHEFSTIMNEHEWPADAIEVQ 347 D+ K + +N + + I ++GY+G + HGFR S+I+NE + DAIE Q Sbjct: 302 PSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSILNETGFNPDAIERQ 361 Query: 348 LAHANGGSVRGIYNHA-QYLDKRREMMQWWADWLDEK 383 L+H VR Y H +YL++R+EMMQWW+D+LD Sbjct: 362 LSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLDSL 398 >UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria RepID=C1D8D2_LARHH Length = 452 Score = 349 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 127/422 (30%), Positives = 211/422 (50%), Gaps = 39/422 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 LT I+ KP++KPY+ DG GLYL + +G K W++ Y+I+GK+K L +G Y Sbjct: 7 LTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNYRINGKQKTLAIGVYCQFALV 66 Query: 58 ------------MTLQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKE 99 M+L +AR AR ++ GIDP + K+ + SF+ + +E Sbjct: 67 DDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAYVARE 126 Query: 100 WYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANK 159 W+ W +A + + I P IG + +I +L +R+ E + ++ ++ Sbjct: 127 WHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILDVTSR 186 Query: 160 ARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 R+ ++ RYA+ TGR +NP DL A++ R + P L +++P + + Sbjct: 187 LRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAAKLRP 246 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASV------------MKGRKIHV 267 ++ A + T +R+ ELR W+ +DF+ + I K R H+ Sbjct: 247 LTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMRTPHL 306 Query: 268 VPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHG 325 VP+ Q + L + +IT E VFAG +D KP+ E+ V + +K++GY+ GHG Sbjct: 307 VPLCQQALALFREVHAITGRF-ELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVCGHG 365 Query: 326 FRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEK 383 FR + ++E + +AIE Q++H SVR Y H A++L +RR+MM WWAD+LD + Sbjct: 366 FRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFLDAQ 425 Query: 384 VE 385 E Sbjct: 426 RE 427 >UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MWW9_VIBHB Length = 410 Score = 348 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 108/387 (27%), Positives = 201/387 (51%), Gaps = 9/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59 L+ Q++ K + K + + DG+GL L + +G K W Y +K + +GKYP ++ Sbjct: 8 LSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGLGKYPDVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L AR++ T R+ ++ GIDP + + + ++ + KEW+E K+ S YA Sbjct: 68 LATAREQRQTMRELVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQHSVSSDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + I P +G L +++I ++ +R E +G++E + +R EV YA+ Sbjct: 128 DDIWRSLELHIFPNLGQLPLREILAPTVIAQLRPLEAKGSLETVKRVCQRLNEVMTYAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G+ + NP ++ K + K+ + + ++++ + +V+ A + +T Sbjct: 188 CGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFEFQLHTLT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W +DF ++ TI MK ++ H +P+SD V++LL + I+ ++VF Sbjct: 248 RPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFMKPISFE-HKYVF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + +V IK+ G+ G HG R ST +NE + DAIE+ LAH + Sbjct: 307 PSDAKAGSHMNSQSVNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELCLAHVDK 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 ++R IYN+A+YL++RR +MQWW++++ Sbjct: 367 NTIRDIYNNAEYLEERRNVMQWWSEYI 393 >UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4I9_9PROT Length = 410 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 136/396 (34%), Positives = 212/396 (53%), Gaps = 17/396 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKPK+KPY+L DG GL+L V ++G K W+L Y+ K+K L +G YP ++L Sbjct: 3 LTELAVKNAKPKDKPYKLSDGGGLFLLVQINGGKYWRLAYRFADKQKTLALGIYPDISLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +AR++ ARK ++ DP KK + NSFSA+ KE ++ K +W+ G+A + Sbjct: 63 DARERREQARKLLANDTDPSAIKKETKRILQTATVNSFSALAKELHKVKAPMWTEGHAKQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + P+IG + +IEP++L+ ++R E +G E ++ + F+YAI G Sbjct: 123 WMLNMEKYAFPVIGDRPVAEIEPLELVGIMRNVEAQGTFETRDRLLQTISSTFKYAIAIG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSG----SIVSLIATKVLRYT 231 +AKYNPA + +NF L D+IPAF +A + S++++ A ++L T Sbjct: 183 KAKYNPAEIRLALADRPKVENFACLSTDEIPAFLRAFDDYQERGKVSLIAVAAFRLLLLT 242 Query: 232 ALRTKELRSMLWKNVDFENRIITIDAS------VMKGRKIHVVPMSDQVVELLTTLSSIT 285 A R+ E+R W + D + I A RK H VP+SDQ + +L L +T Sbjct: 243 ATRSSEVRFSKWADFDLDAGCWIIPAEQTGRKGKHGKRKPHAVPLSDQAIAVLRDLYPVT 302 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 E VF RN + I EN V +I+ +GY+G ++GHGFR T + + + +E Sbjct: 303 GH-GEHVFPSRNGMGRVISENTVNKIIETMGYKGRQTGHGFRSLARTTLGDMGHRWEVLE 361 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 L+HA Y Y ++RR +MQ WAD+LD Sbjct: 362 AMLSHALENQTAAAYVRTTYFEERRGIMQKWADYLD 397 >UniRef50_C0N6F7 Site-specific recombinase, phage integrase family protein n=2 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F7_9GAMM Length = 401 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 136/398 (34%), Positives = 216/398 (54%), Gaps = 17/398 (4%) Query: 2 LTVKQIEAAKP--------KEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVG 53 LT KQI+ KP KPY++ D +GLY+ VP+ G K W+ ++ +G E+ L++G Sbjct: 3 LTDKQIKNLKPGIRPDKSETNKPYKVSDSHGLYIEVPLKGSKRWRYKFYFEGTERKLSLG 62 Query: 54 KYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNN-----NSFSAIYKEWYEHKKQVW 108 YP ++L+EAR K RK I GIDP ++ N N++ + +EW+ K W Sbjct: 63 TYPKISLKEARQKRDDIRKKIDAGIDPSYERRKKRLNASVSGNTYEEVAREWHARNKANW 122 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + YA + + P IG +I I +LL VI+R DRGA+E A++ RR +F Sbjct: 123 TKKYADLTLSRLEQNAFPWIGDRQIDKITAPELLTVIKRVFDRGAIETAHRIRRLSNTIF 182 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKV 227 ++AI G + NPA L A + K+ + ++ +A+ +SG + A K+ Sbjct: 183 KFAIANGMTETNPAAALEGAFPTQKVKHHSAVTEPKKVAELLRAIDGYSGHFATRCALKL 242 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 R +R+ W ++D EN + I MK R+ H++P+S Q +E+L + +T Sbjct: 243 SALVMNRPINIRAAEWGDIDLENSVWRIHMGRMKSRRTHIIPLSRQALEILEEIRPLTGE 302 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEV 346 ++VF K +P+ EN + ++++G+ G E S HGFR ST+++E + +D +E Sbjct: 303 -GKYVFPCMRSKARPMSENTICAALRRMGFSGEEMSAHGFRGMASTLLHEKGYNSDWVER 361 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 QLAH + S R YNHAQ+LD R +M+Q WAD+LDE Sbjct: 362 QLAHID-SSTRSAYNHAQHLDDRAKMLQEWADYLDELR 398 >UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae RepID=Q8VQN9_ECOLX Length = 421 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 143/404 (35%), Positives = 217/404 (53%), Gaps = 22/404 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AAKP +K Y+L DG G++L V +G + W+LRY+I GKEK L +G YP ++L Sbjct: 3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN----NNSFSAIYKEWYEHKKQVWSVGYATELA 117 EAR K ARK IS GIDP + K+A SF I + W+ KQ W+ ++ ++ Sbjct: 63 EARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHSDKVL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 K + + P IG +I + LL +R E + E A++ ++R V RYA+ +G Sbjct: 122 KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +YNPA D+A A+ ++++ P L ++P + ++ G V+ +A + +R+ E Sbjct: 182 RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFIRSSE 241 Query: 238 LRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSIT 285 LR W +D +N + TI A K R H+VP+S Q V +LT L + Sbjct: 242 LRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA 301 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE--GLESGHGFRHEFSTIMNEHE-WPAD 342 +F G +D +KPI EN V ++ +GY+ GHGFR + + E W D Sbjct: 302 GENG-LIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD 360 Query: 343 AIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 A E Q++H VR Y H A++L++RR M+QWWAD+LD E Sbjct: 361 AGERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE 404 >UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobacillus minor 202 RepID=C8KXV2_9PAST Length = 406 Score = 344 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 111/395 (28%), Positives = 190/395 (48%), Gaps = 12/395 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L +I+ AKP++KPY + DG GL+L V +G K W+ Y I K + +G YP +T Sbjct: 8 LVDTEIKKAKPEDKPYTMTDGQGLFLIVSPTGSKSWRFNYYRPISKKRAKIALGMYPAIT 67 Query: 60 LQEARDKAWTARKDISVGIDPVKA------KKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR + ++ GIDP + +K N+ AI ++W + K+ Sbjct: 68 LSKARALRDEYKHLLANGIDPQEHCKQLELQKLQFKQNTLFAIAEKWKQKKETEVKEKTL 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 +M + I P +G L I +I P++L IR DRG + E+ +A+ Sbjct: 128 KPRWRMLEKYIFPELGDLPISEISPLRLSNTIRPVFDRGIANTGLVIIQMVNEIMVFAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G ++N ++A + K+ P + +++P F AL + +V + + T Sbjct: 188 LGIIEFNKCSNVASTFNVKKTTKHQPTIRPEKLPEFMSALRDSAVDLVVKLLIEFSLLTM 247 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R E + W ++F++ + I A MK +K VP+S Q ++LL L IT S F+ Sbjct: 248 VRPNEAANAKWDEINFDDALWHIPAERMKMKKAFTVPLSSQAIKLLNKLKQITG-RSRFI 306 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH--EWPADAIEVQLAH 350 F +KP+ I++IGY G + HG R ST ++E + + IE L+H Sbjct: 307 FQSPRAPQKPMSSVTANAAIRRIGYNGKLTSHGLRSIASTYLSEKFIDINVEIIEACLSH 366 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +R YN + YL++R+ +M W +++E ++ Sbjct: 367 QGKNPIRNAYNRSTYLEQRKLLMADWGQFVEESMK 401 >UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli RepID=Q93UI5_ECOLX Length = 401 Score = 343 bits (879), Expect = 8e-93, Method: Composition-based stats. Identities = 133/390 (34%), Positives = 206/390 (52%), Gaps = 12/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ + P R DG G+YL + SG + W+++Y+ GKEK+L G YPL+ ++ Sbjct: 3 LTDLKVRSL---TTPGRYADGGGMYLQITASGGRYWRMKYRHGGKEKLLAFGVYPLVGIK 59 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 EARDK + A++ +S G DP KK N+F A+ ++W +H+ W + Sbjct: 60 EARDKLFYAKQALSRGEDPGATKKLAKFQAEQDAANTFKAVAEDWLDHQAGRWEAITLSR 119 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + D+ P +G L I I P Q+++V+++ E RGA E A + +R +FRY Sbjct: 120 TRASLEADVYPTLGSLPISSITPRQVMDVVKKIEKRGASEIATRVLQRIKSIFRYGTTHQ 179 Query: 176 RAKYNPAPDL--ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 R + N DL ++ +K R ++ L Q+P F K LA++ G ++ A +L TA Sbjct: 180 RIERNTMADLVPSEILKPRRVQHRAALAPAQLPEFLKKLASYEGEPHTVNALHLLMLTAA 239 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E+R W +D + ++ I MK R HVVP+S + V + + ++ + VF Sbjct: 240 RPGEVRGARWDEIDLKAKLWRIPPERMKMRSEHVVPLSSEAVAAIEAMRPLSGNR-DLVF 298 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 KP+ EN + ++GY+ L + HGFR FST+ NE W ADAIE QLAHA Sbjct: 299 PSPFYPSKPLSENTFNSAMARMGYKYLATAHGFRALFSTVANESGWSADAIERQLAHAER 358 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 VR Y+ L +R +MM WWA +L E+ Sbjct: 359 NQVRAAYDRGVRLPERVKMMNWWAQYLAER 388 >UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 Length = 439 Score = 342 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 139/402 (34%), Positives = 217/402 (53%), Gaps = 24/402 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMT 59 L +Q+E AKPK+K Y++ DG GLYL V G K W+++Y+ KE L G +P +T Sbjct: 7 LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT 66 Query: 60 LQEARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 L +AR K A+K + GIDP +A+ +S +F AI +EW+ K+ WS + + Sbjct: 67 LAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAYTFEAIAREWHASNKR-WSEDHRSR 125 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + I P IG +I+ ++ LL I++ + G + A + ++R + RYA+ Sbjct: 126 VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND 185 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NPA D+A A+ + +++P LP+ + P F LA + G +++ IA K+ T +R+ Sbjct: 186 YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVKLSLLTFVRS 245 Query: 236 KELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSS 283 ELR W DF+ + I A MK ++ H+VP+S Q + LL L Sbjct: 246 SELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQLKQ 305 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEHE-WP 340 I+ E +F G +D K + EN V ++ +GY+ GHGFR + E W Sbjct: 306 ISGD-KELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS 364 Query: 341 ADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 DAIE QL+H+ +VR Y H +++LD+RR MMQWWAD+LD Sbjct: 365 DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLD 406 >UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacteria RepID=Q3JN19_BURP1 Length = 462 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 126/392 (32%), Positives = 204/392 (52%), Gaps = 13/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + AKP++KPY+L DG+G++L V +G K W+L Y+ GK+K L +G YP ++L Sbjct: 60 LSDLAVRNAKPQDKPYKLTDGDGMFLLVQPNGGKYWRLAYRYLGKQKTLALGVYPEVSLA 119 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR + AR+ ++ G DP + KK + +NSF + W E ++ Sbjct: 120 LARQRRAEAREQLAKGADPGETKKADRRAARLAADNSFEVVALAWLEERRPYVEPRQHER 179 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 +D+ P +G I DI+ ++L V++R + RGA A++ R G VF Y I G Sbjct: 180 TLVRLKNDVFPWLGKRPIADIDAPEILAVLKRIDSRGARFTAHRIRSEIGRVFVYGIKEG 239 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 K NPA L A+ + +F + Q+ +A FSG+ L A K+ +R Sbjct: 240 HCKANPAASLVKAIPPAQTTHFASITEPAQVGEMLRAFDGFSGTFPVLCALKLAPMLFVR 299 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W + D E V K + H+VP++ Q V++L L ++T ++VF Sbjct: 300 PGELRKAEWSHFDLEKAEWRY--LVTKTKTEHLVPLATQAVKILKELHAVTG-SGQYVFP 356 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMN-EHEWPADAIEVQLAHA 351 G K++P+ + A+ ++++GY+ +GHGFR TI++ E E + IE QLAH Sbjct: 357 GARSKQRPMSDAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHT 416 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 ++ YN +++ +R MMQ WAD+LD+ Sbjct: 417 VPDTLGRAYNRTKFIKERCAMMQKWADFLDQL 448 >UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enterobacteriaceae RepID=INTZ_ECOLI Length = 402 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 155/392 (39%), Positives = 238/392 (60%), Gaps = 14/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT K I+AA+P++KPY+L D GL+L V +G K W+ RY ++ +E + +G YPL+T Sbjct: 6 LTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLIT 65 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNS------FSAIYKEWYEHKKQVWSVGYA 113 L+EAR +A +R I+ GI+PV+ + ++ F + ++W+ + WS YA Sbjct: 66 LKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESYA 125 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + D+ P++G I DI +L ++++ ++R A E+A K RRR GE+F++A++ Sbjct: 126 KQVRSALEKDVYPVLGKRSIVDITARDVLALLQK-KERTAPEQARKLRRRIGEIFKFAVI 184 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 T NP DL A+K R + ++P +IPAF KAL GS+ A ++L TAL Sbjct: 185 TELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERA-GSVQIQTAIRLLILTAL 243 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 RT ELR W+ ++ E+ IT+ A VMK R+ HVVP+S Q VELL + + S FVF Sbjct: 244 RTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSG-YSAFVF 302 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 GR KP+ +A+L +++IGY+ + +GHG+R FST +NE + D IE+QLAH Sbjct: 303 PGRF-MDKPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVP 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 G +RG+YN A YL +RR MMQ +AD +D + Sbjct: 362 KG-IRGVYNQAAYLKQRRAMMQDYADAIDSIL 392 >UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4F8_HAES1 Length = 413 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 108/389 (27%), Positives = 194/389 (49%), Gaps = 9/389 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTL 60 LT +I AKPK+K Y L DG GLYL V +G K+W+ Y + K K++++G YP +L Sbjct: 8 LTNTKILNAKPKDKDYTLSDGQGLYLLVKSNGSKLWRFNYYDLLKKRKLISLGSYPETSL 67 Query: 61 QEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 +AR K R ++ I+P K + + N+ + K+W E K Sbjct: 68 LDARTKRDEYRALLAKDIEPQDYIFKQKEQAIFNQCNTLIGVAKDWREMKSSKVEADTMK 127 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + ++ + + P +G + I DI +++ D E K R E+ R+A+ Sbjct: 128 DQWRLLELHLFPHLGNMPISDITAPFTRMKLQKLADDKKFEMLKKVIRGLNEIMRFAVNA 187 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 G ++NP +L + ++ P + D++P F +++ + + + + T +R Sbjct: 188 GLIQFNPTANLQELFPSGEVQHRPSIHPDKLPKFLESVNKANIQLQTRCLLEWQLLTMVR 247 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRK-IHVVPMSDQVVELLTTLSSITKPVSEFVF 293 E +W+ +DFEN+ I MKG+K H+VP+S Q + +L + IT +FVF Sbjct: 248 PSEAAGTMWREIDFENKTWLIPKDRMKGKKRSHLVPLSQQAINILNIMRPITGNC-DFVF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 D + + ++++GY+G+ HGFR ST +NE+E+ + IE L+H G Sbjct: 307 PKNGDLTTNMSSETINKALRKMGYQGILCAHGFRSIASTALNENEFNVEIIEALLSHVKG 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 VR Y+ + Y ++R+ ++WW +++++ Sbjct: 367 DKVRTAYDRSTYEKQKRQYIEWWGNFVEK 395 >UniRef50_B4X5T7 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5T7_9GAMM Length = 398 Score = 338 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 121/392 (30%), Positives = 210/392 (53%), Gaps = 13/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ +I AAKP++K Y + DG G++L + G K W+ +Y+ +GK+K L++G YP +L+ Sbjct: 6 LSDVKIRAAKPQDKLYSISDGEGMFLEISPKGGKWWRFKYRFNGKQKRLSLGTYPSTSLK 65 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQ--VWSVGYA 113 ARDK AR+ ++ G+DP + +K N+F+ + +EW ++K + W+ Sbjct: 66 AARDKRQQARELLASGVDPAQQRKTEKLATETALRNTFAGVAEEWAQNKVRSEKWTPTTE 125 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + D+ ++P +G I +I +L V++ + + AN+ R E+F +A+ Sbjct: 126 KKRRIWLDNGLMPYLGSRPISEITTAELWGVLQ-HTQKTSGYTANRLRGMASEIFNFAMA 184 Query: 174 TGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGRA NPA L + ++K+ L D++ +A+ ++ + A ++ Sbjct: 185 TGRADNNPALPLQGQIAVKKEKHRLAILEPDEVGKMLRAIDGCQAAVTTKAAARLAPLVF 244 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R ELR W +D + + +I A MK R+ HVVP+S Q V +L + +T S +V Sbjct: 245 VRPGELRHAEWSEIDLKKALWSIPAEKMKMRESHVVPLSRQAVAILKEIQPLTG-SSGYV 303 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHA 351 F G +PI +N + ++K +GY+G + HG+R T+++E + D IE QLAH+ Sbjct: 304 FEG-TKPGEPISDNTLNKLLKALGYKGKMTQHGWRAIARTLLDEVLDVRVDWIEHQLAHS 362 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 + YN +L+ R MMQ WAD+LD+ Sbjct: 363 VRDANGRAYNRTSHLEGRIGMMQLWADYLDKL 394 >UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=C7SIL5_ECOLX Length = 420 Score = 338 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 124/405 (30%), Positives = 224/405 (55%), Gaps = 23/405 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I KP +KP+++ D +GLYL V G + W L+Y+I+GKE + +G YP ++L Sbjct: 3 LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNS----FSAIYKEWYEHKKQVWSVGYATELA 117 +AR + RK +++ I+PV+ + A + + F + W++ ++ WS A L Sbjct: 63 DARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRK-WSQNTADRLL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ I P+IG L + +++P +++++R E++G +E A++ R+ + R+A+ G Sbjct: 122 ASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFS-GSIVSLIATKVLRYTALRTK 236 NPA +L ++++P LP +++P + + + G ++ +A ++ + +R+ Sbjct: 182 DTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRLAVLLMLHVFIRSS 241 Query: 237 ELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSI 284 ELR W +DF NR+ TI A+ K R H+VP+S+Q + +L + I Sbjct: 242 ELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQIKDI 301 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEHE-WPA 341 T +E +F G ++ KP+CEN V ++ +GY + GHGFR + + E W Sbjct: 302 TGN-NELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360 Query: 342 DAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 DA+E Q++H +VR Y H A++L+ R+ MMQWW+D+L+ E Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRE 405 >UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL52_9BACT Length = 378 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 14/383 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I+ A P+EK Y + D GL+L + +GKK W++R+K G+E T+G+YP ++L+ Sbjct: 3 LTNVEIKRATPREKRYTMRDSEGLWLEITPAGKKTWKVRFKAQGREIKHTLGRYPDISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKK-QVWSVGYATELAKMF 120 EAR K R ++ S +F A+ +EW+E + V + G+A + Sbjct: 63 EARLKRDEIRLELVN--------HKSVPEGTFKALAEEWFERQVVPVRTHGHARTIRSRL 114 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 D ILP +G DI+ +LL ++RR ED+G +E A++ + G+V RY I TG+A+++ Sbjct: 115 DRLILPYLGDKPPADIDAPELLAILRRIEDQGHVETAHRVSQIVGQVLRYGIATGQARHD 174 Query: 181 PAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 DL A+ + ++FP L +I +A+ FSGS+V A YTA+R E+R Sbjct: 175 ITADLKGALIPRKPEHFPTLTDPKKIGGLMRAIQAFSGSVVVRCAMLFQIYTAVRPGEMR 234 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 WK +D + I A MK R+ H+VP+S Q + +L + +T E +F K Sbjct: 235 KAEWKEID--GDLWKIPAERMKKRRPHLVPLSSQAIGVLEEIRPLTGG-GELIFPSVRSK 291 Query: 300 KKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRG 358 +PI + V ++++GY + +GHGFR FSTI NE +WP++ IE+QLAH + SVR Sbjct: 292 TRPISDMTVNAALRRMGYAQNELTGHGFRAMFSTIANECQWPSNVIELQLAHVDKNSVRA 351 Query: 359 IYNHAQYLDKRREMMQWWADWLD 381 YNHA+ LDKRRE++QWW DWLD Sbjct: 352 AYNHAELLDKRRELLQWWGDWLD 374 >UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K287_PSEFS Length = 401 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 124/398 (31%), Positives = 195/398 (48%), Gaps = 17/398 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L AKP++KPYRL D GLYL V +G + W+L+Y+ GKEK L +G YP + LQ Sbjct: 3 LKDTNCRNAKPQDKPYRLYDEQGLYLEVQPNGGRYWRLKYRFLGKEKRLALGVYPEVGLQ 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR K AR ++ G DP ++ + + ++F ++ +W ++ W Y Sbjct: 63 EARRKRDDARVQLASGQDPSLQRRMAKVVSQLDHQHTFESVATQWLNIRESSWDPEYTRT 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + + P +G L I I L+E ++R RGA E A + + ++F +A G Sbjct: 123 VRQRLELNAFPWLGKLPISSISTPMLVENLQRIIKRGARETARRVAQIYKQIFEFAEAAG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTALR 234 N +L+ + R K+F + + + A KAL +++G++ A K+ R Sbjct: 183 ITPPNQIGNLSRTLPAKRVKHFAAVTDPEKLGALLKALDSYAGTMPVCCALKLAPLLFCR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKG-------RKIHVVPMSDQVVELLTTLSSITKP 287 +LR M W V+ + I MKG R H+VP+S Q + +L L +T Sbjct: 243 PGDLRHMEWSEVNLDAGEWLIPGHKMKGLTATKQDRPDHLVPLSQQAIAVLHELKPLTG- 301 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNE-HEWPADAIE 345 + F +P+ NAVL ++++ G E +GHGFR TI E + D +E Sbjct: 302 RHRYAFPSARGGDRPMSNNAVLSALRRMDISGDEMTGHGFRATARTIGAEVLGFRPDLLE 361 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 QLAH + Y+ +L +RREMMQ WAD+LD Sbjct: 362 HQLAHTVKNPLGRAYDRTSFLPERREMMQIWADFLDSI 399 >UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MGW9_DIAST Length = 428 Score = 337 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 134/412 (32%), Positives = 210/412 (50%), Gaps = 30/412 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKV-WQLRYKIDGKEKILTVGKYPLMTL 60 L+ I + KP + +L DGNGLYL + V+G K W+ YK+ GK K +++G YP +L Sbjct: 6 LSDTTIRSVKPGDPRRQLTDGNGLYLLLYVNGGKHGWRFDYKVQGKRKTISLGTYPATSL 65 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSN------------------NNSFSAIYKEWYE 102 AR KA AR+ ++ GIDP +K+ N +F A+ +EW+E Sbjct: 66 SLARAKANAARELVAAGIDPSADRKSKKAAEKKVHEDAKLVAAGKPLNGTFEAVAREWFE 125 Query: 103 HKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR 162 + W+ YA ++ + + D+ P IG + D+ +LL V+RR EDRG +E A++A Sbjct: 126 VRSPEWAAKYAEKVLRRLEADVFPHIGIRPVGDVTAPELLAVLRRIEDRGVIETAHRAHE 185 Query: 163 RCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVS 221 C ++FR+A+ G AK + A DL ++ R ++FP L ++ +A + G+ V Sbjct: 186 SCSQIFRFAVGAGLAKGDVARDLKGLLRKPRTRHFPAILCPKRLGELLRACDGYVGTHVV 245 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQV 274 A + LR ELR W ++ TI MK H+VP+ Q Sbjct: 246 RAALSLAPMLLLRPGELRHARWDEINLNTATWTIPGERMKREREGKLNGMPHIVPLPRQA 305 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTI 333 V++L L IT E VF G +P+ EN V ++ +G+ +GHGFR T+ Sbjct: 306 VQVLRELHPITG-RGELVFRGERHHHRPMSENTVNAALRAMGFGADEVTGHGFRATARTL 364 Query: 334 MNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ++E ++ IE QLAH+ S+ YN +YL +RR+MMQ WA++L+ Sbjct: 365 LDERLGIASEIIEAQLAHSVKDSLGRAYNRTEYLVQRRKMMQQWANYLEALR 416 >UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholderiales RepID=A1WLK0_VEREI Length = 421 Score = 337 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 133/403 (33%), Positives = 204/403 (50%), Gaps = 19/403 (4%) Query: 1 MLTVKQIEAAK-PKEK-PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT K + A P +K RL D GLYL V SG K W +Y+ DG+EK L +G YP + Sbjct: 1 MLTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYRFDGREKRLALGVYPDV 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGY 112 L++AR ARK G+DPV ++ +F + +E++ KK+ WS+ Y Sbjct: 61 PLKDARTARDDARKQHQRGVDPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLEY 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + DI P +G L ++ I LL+ +RR E RGA E + CG+ FRY I Sbjct: 121 ARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARGARELPHSLLEACGQTFRYGI 180 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TGR N A DL A++ K+ L ++ A+ + G + + +A + Sbjct: 181 ATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSALL 240 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQVVELLTTLSSI 284 R +R M W+ VD E + I + MK + H+VP++ Q V +L L + Sbjct: 241 FQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQPL 300 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNE-HEWPAD 342 T +VF K+P+ EN V + ++++G++ + HGFR T++ E +D Sbjct: 301 TG-RGRYVFPAVVSPKRPMSENTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSD 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 IEVQLAH G + Y+ A+++ +R+ MMQ WAD+LD E Sbjct: 360 VIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDALCE 402 >UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobacteria RepID=B7MX56_ECO81 Length = 419 Score = 337 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 114/389 (29%), Positives = 192/389 (49%), Gaps = 10/389 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKIL--TVGKYPLMT 59 LT QI+AA+P +K Y L DG GL+L V SG K+W+ Y +K + + G ++ Sbjct: 14 LTTVQIKAARPAQKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSFGSLEDVS 73 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHK-KQVWSVGY 112 L +AR + R IS G DP + +A N+F + WY+ K Q + Sbjct: 74 LADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKISQNLAPNT 133 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + D + P IG I + + +EV+ ++RG +E + +R EV YA Sbjct: 134 IKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVNEVMDYAA 193 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 +G NPA ++ A KK+ P + +Q+P +AL+ + + + + T Sbjct: 194 NSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLIEWQLLTV 253 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R E S W ++ + + TI A MK R+ HV+P+S Q + +L + I+ + +V Sbjct: 254 TRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPISHHRN-YV 312 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 F D ++P+ ++++G+ G+ HG R FST NE + D IE LAH + Sbjct: 313 FPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEAALAHVD 372 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLD 381 VR YN + Y++KR +M+WW ++++ Sbjct: 373 TNEVRRAYNRSNYIEKRIVLMRWWGEFVE 401 >UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammaproteobacteria RepID=A0KW55_SHESA Length = 411 Score = 336 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 106/387 (27%), Positives = 189/387 (48%), Gaps = 10/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT K + AK + KPYRL DG LYLYV +G K W+ RY K +G YP ++ Sbjct: 8 LTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGLGSYPDVS 66 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L EARDKA ARK+++ GIDP K K A+ N + I + W + K+ Sbjct: 67 LAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQGSIKPKTI 126 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P +G + I + + ++ E +G +E + + E+ +++ Sbjct: 127 EGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNEIMNFSVN 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 +G NP + + + + ++ L ++ + +A + + + + +T Sbjct: 187 SGYIHANPLSGIREVFRKSKVEHLKALKPAELAELLQTIANANLLLTTRCLIEWQLHTMT 246 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W+ +DF+ ++ TI S MK + H++P+++ + +L T+ I++ S+FVF Sbjct: 247 RPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPISE-QSQFVF 305 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 D +K + + ++G +G +GHG R ST +NE + D IE LAH + Sbjct: 306 PSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAALAHVDK 365 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 +R YN YL++R ++M+WW++ + Sbjct: 366 NQIRSAYNRTTYLERRTKLMEWWSNHI 392 >UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea psychrophila RepID=Q6AR70_DESPS Length = 399 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 202/394 (51%), Gaps = 19/394 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L Q+ AK P RL DG GL V SG K W RY++D K+++ +G+YP ++L+ Sbjct: 4 LKALQVRNAK---DPCRLSDGLGLSFEVTKSGVKRWLYRYRLDDKQQMCVLGRYPELSLE 60 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN-------------NSFSAIYKEWYEHKKQVW 108 +AR AR + G +P + ++ SF I EW E+ K+ W Sbjct: 61 QARKIHREARALVREGCNPARERRRKKQEVISKEKAERDDRSKSFEYIALEWIENNKESW 120 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 S + + +++ G + I P +L IR E+RG++E K +R VF Sbjct: 121 SPSHQQAVLASLRNNVFSAFGNTPVDTITPPDVLRTIRAIENRGSLEIVRKVLQRTNAVF 180 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF-SGSIVSLIATKV 227 RYAI TGRA YNPA D+ A+K ++ P + ++ + +++ + + +A + Sbjct: 181 RYAIQTGRATYNPAADMQGALKAKTVEHMPAVFDSELAQLLQDISSNQKIHVTTKLAIQF 240 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 TA R E+R+ W+ V+ + I A MK R+ H+VP+S Q + +L ++ Sbjct: 241 TALTACRGGEVRNARWQEVNLDTNEWHIPAERMKMRRAHIVPLSIQALAILHRAGALWGE 300 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEV 346 FVF D+ KP+ +NA+ + +GY G + HGFR FS++ +E + ++ IE Sbjct: 301 DG-FVFPSIRDRSKPMSDNAMGKAFRDMGYRGKATPHGFRSSFSSMAHEQSGFASEVIEK 359 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 LAH V+G YN A+YL++RRE++QWW + L Sbjct: 360 SLAHEEKNKVKGAYNRAEYLEQRRELLQWWGEKL 393 >UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus parasuis SH0165 RepID=B8F555_HAEPS Length = 405 Score = 335 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 108/394 (27%), Positives = 186/394 (47%), Gaps = 11/394 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L +I+ AK K+KPY L DG GL+L V ++G K W+ Y I K + +G YP + Sbjct: 8 LVDTEIKKAKAKDKPYTLTDGGGLFLLVSITGSKSWRFNYYQPITKKRTKMALGMYPTVN 67 Query: 60 LQEARDKAWTARKDISVGIDPVK------AKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR +K ++ IDP + +K N+F AI ++W + K Sbjct: 68 LSKARALRDEYKKLLADDIDPQQYIKNKQQEKLQETQNTFLAIAEQWKQKKSAEIKPATL 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P +G + I I+P+Q+ E++ RG + E+ R+A+ Sbjct: 128 KNHWRRLELYAFPTLGNISITMIKPLQVTELVTPLFLRGVNSTGVLLLQTINEIMRFAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G ++N D+AD + ++ P + + +P F AL ++ + T Sbjct: 188 RGIIEFNKCADIADTFVKSKSEHHPTIRPEHLPEFFAALRNSHADLIIKSLIEFSLLTIA 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E + W +DFE + I A MK ++ +P+S Q V++L L IT S ++F Sbjct: 248 RPSEAANAKWAEIDFEQSLWNIPAERMKMKQPFTIPLSIQAVKILKKLQVITG-RSLYIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH--EWPADAIEVQLAHA 351 +PI + IKQ+GY+G + HG R +T ++E + + IE L+H Sbjct: 307 QSIKKPSQPIGKQIANNTIKQMGYKGKLTSHGLRSIANTYLSEKFIDLNVEIIEACLSHK 366 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + VR YN + YL++R+ +M W +++E ++ Sbjct: 367 SQNQVRNAYNRSTYLEQRKPLMNDWGQFVEESMK 400 >UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola DG893 RepID=A6F4S5_9ALTE Length = 437 Score = 334 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 140/395 (35%), Positives = 205/395 (51%), Gaps = 13/395 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 M+T + AK K+ YRL D GL L + SG K W+ RY++ GK + TVG+YP +T+ Sbjct: 1 MITDTKARKAKAKDTTYRLADSGGLALEIRPSGSKFWRYRYRLHGKAGMYTVGEYPTITI 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR A+K ++ G P + KK N+ + KEW K WSV Y Sbjct: 61 SEARAIRDWAKKCVANGEAPAEVKKRELAERRAEQANTLEEVGKEWIARNKAGWSVYYHR 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ +M + DI P +G I+DI P Q+L ++R E+R A A ++ ++R+AI T Sbjct: 121 QVTRMLEADIWPNLGKKGIRDITPAQMLAELQRVEER-APTVAVNLKQWLAAIYRHAIAT 179 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI---VSLIATKVLRYT 231 RA +P L A+K + K+ P D+ +A+ G+I ++ IA ++L T Sbjct: 180 LRADNDPTAPLRGAIKKPKAKHKPSYNLDEFGKLCRAIWPKEGAIAYRITEIAIRLLALT 239 Query: 232 ALRTKELRSMLWKNVDFE--NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 RT E+RS W D E TI MK H+VP+S Q VELL L +T Sbjct: 240 MARTVEVRSARWDQFDLESEEPTWTIPGEKMKRGVTHLVPLSSQAVELLRELEGLTGNR- 298 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 + F +P+ + V++++GY GL SGH FR ST++N + + D +E QLA Sbjct: 299 PYCFPNLRQPTEPMSATTINRVLERLGYGGLFSGHAFRTTASTLLNNYGFDGDWVERQLA 358 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H R YNHA+YL +RR M+QWWAD +D Sbjct: 359 HTEENKSRASYNHAEYLYQRRIMLQWWADLVDTLR 393 >UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria RepID=Q5P707_AZOSE Length = 415 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 131/388 (33%), Positives = 201/388 (51%), Gaps = 8/388 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT + A K +K YR+ D +GL L V SG K W+ R+++ K+ + +G+YP M L Sbjct: 1 MLTDAKCRAVKATDKTYRVADSHGLCLEVRPSGAKFWRYRFRLADKQNMHALGEYPAMGL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGYAT 114 Q+AR AR+ + GI+P + +F + EW E + WS Y Sbjct: 61 QDARRARDEARELVRKGINPSHHRGLEKAERILALGSTFETVTAEWIERNRPDWSANYIR 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ D+ P IG I D++ +L ++R+ E R + +A + G VFR+A+V Sbjct: 121 QVRARMAGDVFPEIGQYPIADLKAAHVLAMLRKVEKR-SPTQAALVKTWVGGVFRFAVVE 179 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + +P L A+K + + L D+I AF +A+A G + A ++ TA R Sbjct: 180 QLREDDPTFPLRRAVKPTQVNHHAILRNDEIGAFLRAIAAAPGEVTVKEAVGLMWATACR 239 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E+ W +D + + TI MK ++ HVV ++ Q VE+L + T + E VF Sbjct: 240 INEVTGARWAGIDLDAGLWTIPPGRMKAKQEHVVTLTRQAVEILRRVQVHTGTL-EHVFP 298 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 R+D+K+P+ AV + ++ GY G + HG R FSTI N W AD IE+ LAH Sbjct: 299 HRSDRKRPMSGEAVRDLFRRAGYAGKFTPHGVRGTFSTIANGAGWRADVIELCLAHQERN 358 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDE 382 +R YNHAQ LD+RRE++QWW D D+ Sbjct: 359 QIRRAYNHAQLLDERRELLQWWGDLSDQ 386 >UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VQL7_POLNA Length = 413 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 125/402 (31%), Positives = 205/402 (50%), Gaps = 21/402 (5%) Query: 2 LTVKQIEAAKPKEKPY--RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT + K P + DG G+YL V +G K W++ Y+ GK K L +G YP ++ Sbjct: 3 LTDIFTKNTKHSGAPAGDKHTDGGGMYLLVTKAG-KYWRMNYRFAGKRKTLALGVYPAVS 61 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYA 113 L EAR ARK ++ IDP AK+ N+F A+ +E++ K WS G+A Sbjct: 62 LAEARQGRDKARKLLAQDIDPSAAKQEDRQATATAAANTFEAVAREFHALKAGGWSEGHA 121 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 T+ +M + + P IG L + I+ LL +R+ E +G + A + G+VFRY + Sbjct: 122 TKWLRMNELYLFPHIGTLPLSTIKAPTLLAALRKVEKKGILSTAQDLQAMAGQVFRYGVQ 181 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGR + NP DL A++ + K+F L + A +A+ ++G +L A K+ Sbjct: 182 TGRCESNPGVDLKGALQPHIAKHFAAILDPVEAGAMLRAIDAYTGQPETLAALKLSALFF 241 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQVVELLTTLSSIT 285 R +R+M W +D + +++TI A MK K H VP++ Q +++L ++ +T Sbjct: 242 QRPGNIRAMEWAWIDLDGQMLTIPAKSMKSSKHEKANGKPHTVPLARQALDVLKSIKQLT 301 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNE--HEWPAD 342 +VF G ++P+ + + ++++ Y HGFR T+M E P D Sbjct: 302 GH-GRYVFPGARTGERPMSDGTINAALRRLDYGNNEHVAHGFRAMARTMMAERLSGIPQD 360 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +E QL H G + Y+ ++YL +R++MMQ WAD+LD+ Sbjct: 361 MVEAQLGHGKKGPLGSAYDRSEYLPQRQQMMQTWADYLDKLR 402 >UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobacteria RepID=B8GNQ7_THISH Length = 422 Score = 333 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 126/392 (32%), Positives = 208/392 (53%), Gaps = 11/392 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +L+ +++E +++PY L DG L+LYV SG K+W+ RY++ GK I +GKYP ++L Sbjct: 5 LLSARKVETIPSQKEPYWLKDGGSLFLYVTPSGSKLWRYRYRLGGKPAIYAIGKYPQVSL 64 Query: 61 QEARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 + AR + AR+ + G+ PV K + N N+F + + W Q WS GYA Sbjct: 65 EAARTERDRARELVKKGVHPVVEKRVNISTQLEKNENTFEPVARRWMASNVQ-WSEGYAD 123 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ + ++D+ P +G L + I L VI+ +RGA A R+ C ++F YA Sbjct: 124 QVKRTLENDVFPKVGKLPVSSIRTAHLRPVIKDVAERGAPTVAILIRQLCSQIFAYAAGE 183 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 +P L ++K R ++ P LP +IP F + G V++IA +++ T +R Sbjct: 184 ELCDSDPTALLKRSVKRPRVRHHPPLPWQEIPKFLSRVDDA-GYRVTVIALRLMALTYVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T ELR W D ++ + T+ A MK R H+VP+S Q + LL L ++T + +F Sbjct: 243 TAELRKAHWSEFDLDSAMWTVPAGRMKMRDPHIVPLSKQAIVLLKELHTLTGG-GKVLFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG- 353 G + + V++++GY G S HGFR +T++ +P + +++QLAH+ Sbjct: 302 GFRKPGTVMSATTLNKVLERMGYGGQFSSHGFRSTATTLLGLLSYPENRVDLQLAHSKRK 361 Query: 354 -GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 S R Y+H +Y+ R+ +MQ WAD LD Sbjct: 362 KDSSRAPYDHTKYIASRKIIMQDWADILDAMA 393 >UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M393_9ENTR Length = 420 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 129/404 (31%), Positives = 208/404 (51%), Gaps = 21/404 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L I+ A +EKPYRL D GLYL + SG ++W R++ +GK+ + G YP +T+ Sbjct: 3 LNDHIIQNAISQEKPYRLADSLGLYLVISNSGSRLWYFRFRFNGKQNRIAFGPYPQITIA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK----ASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 +AR K ARK ++ GI P + +K ASS +F I W+ WS G+A ++ Sbjct: 63 DARRKRDAARKLLTSGISPSEHRKSEKAASSKTRTFQHIALAWHSSCLNRWSEGHANKIL 122 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + P +G +I IE L E+I+ ++G + A++ R+ ++ R+++ G Sbjct: 123 VCLQRYVFPYVGKKDIAKIETFHLAELIKEVNNKGVHDVASRIRQYLTKIMRHSVQQGLI 182 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 YNPA DL D + +++P LP + + + G + +A ++ + LR E Sbjct: 183 HYNPALDLEDIITPVVVQHYPALPLRSLSELLIKIDDYKGQELIRLALELSLHVFLRASE 242 Query: 238 LRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSIT 285 LR W + + I TI A K ++ H+VP+SDQ +++L + I+ Sbjct: 243 LRFARWDEFNMKIHIWTIPAKRKAVDGVRFSDRGSKMKEEHLVPLSDQAMKILERIKKIS 302 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEHE-WPAD 342 SEFVF + +P+ EN + ++ IGY + HGFR + +NE W D Sbjct: 303 GE-SEFVFHSIRNLNRPMSENTINKALRVIGYCTKNDVCAHGFRTMACSALNESGKWSKD 361 Query: 343 AIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 AIE Q++H + +VR Y H A+YL++R EMMQWW+D+L E Sbjct: 362 AIERQMSHKDRNNVRAAYLHKAEYLEERFEMMQWWSDYLSTTRE 405 >UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7HXY0_THIIN Length = 392 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 131/387 (33%), Positives = 201/387 (51%), Gaps = 8/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LTVK ++AAKP+E+PY+L DG GLYL+V +G K W+ Y+++GK++ T G+YP MTL Sbjct: 3 LTVKAVDAAKPQERPYKLTDGGGLYLFVAPTGLKSWRANYELNGKQRTRTYGRYPAMTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSV-GYATELAKMF 120 +AR+ A+ S + + +F AI ++W + K S + ++A Sbjct: 63 QAREAHTQAK---STPAEAATVTPIAKVAPTFKAITEQWLKIKLPSLSNGKHQGQVAGTL 119 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG L I I +L+EV++ + G +E A++ R VF YA G + + Sbjct: 120 ERFAYPAIGKLPIDQIPRTKLVEVVQAVQKGGRVETAHRVAGRIAAVFDYAQDVGYIESH 179 Query: 181 PAPDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 A L ++ + KK +P + A A+ + V+ + ++L T +R E+R Sbjct: 180 GAAGLVRVLQPRKVKKPMASIPPGEAGALLAAIDGYE-EPVTRLGLQLLALTFVRVGEMR 238 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 M W + + + + A MK HVVP+S Q +L L +T + V Sbjct: 239 GMRWSELREDGTVWVVPADRMKAGLPHVVPLSQQARAVLEQLRVLTGDRN-LVLDSPLRP 297 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRG 358 + EN L + ++GY G + HGFR ST++NE + D IE QLAH +VR Sbjct: 298 GHALSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHRETDTVRA 357 Query: 359 IYNHAQYLDKRREMMQWWADWLDEKVE 385 YN AQYLD+RR +MQWWADWLD + E Sbjct: 358 AYNRAQYLDQRRGLMQWWADWLDRQRE 384 >UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriaceae RepID=Q0P7K9_ECOLX Length = 423 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 124/405 (30%), Positives = 222/405 (54%), Gaps = 23/405 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +I + KP +KP+++ D +GLYL V G ++W L+Y+I+GKE + +G YP ++L Sbjct: 3 LNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS----NNNSFSAIYKEWYEHKKQVWSVGYATELA 117 +AR + RK +++ I+P + + A F ++ EW+ KK+ WS A + Sbjct: 63 DARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKK-WSQNTADRVL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + P IG L + +++ +E+++ E++G +E A+++R+ + RYA+ G Sbjct: 122 ARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEVASRSRQHLSNIMRYAVHQGLI 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFS-GSIVSLIATKVLRYTALRTK 236 + NPA +L ++++P LP +++P + + ++ G ++ +A + + +R+ Sbjct: 182 EINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLTLHVFIRSS 241 Query: 237 ELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSI 284 ELR W ++F NRI TI A+ K R H+VP+S+QV+ +L + I Sbjct: 242 ELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKEI 301 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEHE-WPA 341 + E VF G +D KP+ EN + ++Q+GY + GHGFR + + E W Sbjct: 302 SGGY-ELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ 360 Query: 342 DAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 DA+E Q++H +VR Y H A++++ R +MMQWW+D+LD E Sbjct: 361 DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSE 405 >UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophilus influenzae RepID=Q4QNN7_HAEI8 Length = 403 Score = 330 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 106/394 (26%), Positives = 186/394 (47%), Gaps = 11/394 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L +I+ AK KPY L DG GL+L + +G K W+ Y I K +++G YP +T Sbjct: 8 LVDTEIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRPITKKRAKISLGLYPAIT 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR+ R+ ++ IDP + K NN+F AI +W + K Sbjct: 68 LSKARELREQYRQLLANKIDPQEYIKQHELLQLQRQNNTFFAISTQWKQKKVSEIKSVTL 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P +G I +I P QL + + +RG E+ +A+ Sbjct: 128 KSRWRTLEKYAFPYLGDNPIAEITPQQLHDTVIPLFERGVSHTGKLVIALVNEIMNFAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G ++N +++ A R + P + +++P F AL ++ + T Sbjct: 188 KGIIEFNKCINVSKAFNVNRTTHHPTIRPEKLPEFMSALRHSHIDLMVKYLIEFSLLTIT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E + W +DFE + I A MK +K +P+S QV+++L L +I+ S F+F Sbjct: 248 RPSEAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG-RSRFIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE--HEWPADAIEVQLAHA 351 + ++P+ ++ IK++GY+ + HG R ST ++E E + +E L+H Sbjct: 307 QSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSETFTEMNLEILEACLSHQ 366 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + VR YN + YL++R+ +M W D+++E ++ Sbjct: 367 SKNQVRNAYNRSTYLEQRKPLMNAWGDFVEECMK 400 >UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQ25_BRASB Length = 407 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 140/394 (35%), Positives = 214/394 (54%), Gaps = 13/394 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + AK + K +L DG GL+L + G K W+L Y+ GK++ L +G YP + L Sbjct: 3 LTDTKCRNAKGQIKSRKLSDGGGLHLLITPDGAKYWRLAYRWHGKQRTLALGVYPAVGLI 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 EAR A++ I+ IDP K+ N+F A+ +EW+E+ K S YA + Sbjct: 63 EARASRDDAKRSIAADIDPSIVKRERKRAAKIATGNTFEAVAREWHENWKDARSPYYAAQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + D P IG I +EP +LL+++R+ E RG E A + ++ G++FR+AIVTG Sbjct: 123 ILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLVGQIFRFAIVTG 182 Query: 176 RAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RAK +P+ DL DA++ + +P ++P F + L ++SG + +A K++ T LR Sbjct: 183 RAKRDPSVDLKDALRATGEPQRHRAMPLSELPTFLQKLESYSGEQQTKLALKLVTLTFLR 242 Query: 235 TKELRSMLWKN---VDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 T ELR+ W +D + + I A MK R H+VP+S Q V L L +++ S Sbjct: 243 TTELRAGKWNELENLDENSALWRIPAERMKMRLEHLVPLSRQAVAALRELRTLSGG-SPN 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAH 350 +F K + N +L + ++GY G + HGFR STI+NE + D IE QL+H Sbjct: 302 IFPSP-GKGDCMSSNTMLYALYRMGYHGRATTHGFRAVASTILNETNLFNRDWIERQLSH 360 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 VR YN A+++ RR MMQWWAD + Sbjct: 361 VERNEVRRAYNAAEWMPDRRRMMQWWADHITALA 394 >UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholderia ambifaria RepID=Q0BEM8_BURCM Length = 414 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 198/388 (51%), Gaps = 10/388 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AK KP +L DGNGLYL V SG K+W+ +Y+I GKE + +G+YP +LQ Sbjct: 3 LTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTSLQ 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR AR+ + G+ P A++ + +F A+ EW E K++ W+ + E Sbjct: 63 AARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHFGE 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +M + D P IG ++ I +L ++RR E RG+ A K R+ VF+YA++T Sbjct: 123 ILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYAVITL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA L A+ ++ L +++ A + L + + IA ++L RT Sbjct: 183 RADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTT-IAIRLLMMLFPRT 241 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV-FA 294 EL W+ +D + +K R++H+VP+ Q + LL L I + Sbjct: 242 VELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYILPIL 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 N K+ + + + + E +GH FR ST ++E W + +E+QL+H + Sbjct: 302 HSNRKRPHMSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSHKD 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWL 380 R YNHA+YL +RREMMQ WADWL Sbjct: 362 KDRTRSTYNHAKYLPERREMMQSWADWL 389 >UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria RepID=Q2N8A1_ERYLH Length = 409 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 132/398 (33%), Positives = 213/398 (53%), Gaps = 15/398 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +LT I AK K Y+L D +GL+L V +G K+W+++Y+IDG+EK L +G+YP + L Sbjct: 2 VLTDVGIRKAKAGPKAYKLSDSSGLFLLVERTGGKLWRMKYRIDGREKKLAIGRYPEIGL 61 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKK----QVWSV 110 EAR + AR+ ++ G DP + K+ N+F+++ E+ E +K + W+ Sbjct: 62 AEARRRRDAAREQLAQGKDPSREKQRQKARAKLGAENNFASLAAEFCEKRKHDGSRAWAP 121 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 A + + IG L I DIEP +L +RR E +G +E A + + G VFRY Sbjct: 122 ATAKRCEYLL-SVLNSSIGHLPIADIEPADILTAVRRIESKGKLESAKRTLQLAGSVFRY 180 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 A+ T R K +P DL A+ ++ L +A+ + G ++ +A ++ Sbjct: 181 AVATARLKSDPTRDLRGALMNPTVTHYGAVLDPAGAGELLRAIDGYEGQPITKLAMQLAP 240 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 + +R ELR W +DF+ + TI AS K RK H+VP+S Q + +L +T P Sbjct: 241 HVFVRPGELRHAEWSEIDFDEALWTIPASKTKMRKDHLVPLSRQAIAILEMAHRLTGPDG 300 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHE-WPADAIEVQ 347 +VF +K+P+ +N + ++++GY + HGFR ST++NE W DAIE Sbjct: 301 -YVFPSVRTRKRPMSDNTINAGLRRLGYATDEMTAHGFRAMASTLLNESGKWNPDAIEGA 359 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 LAH + VR Y+ + +R +MM+WW+D+LD+ E Sbjct: 360 LAHGDSDKVRAAYHRGAHWKERVKMMKWWSDYLDQLRE 397 >UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHC8_THIDA Length = 425 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 131/396 (33%), Positives = 204/396 (51%), Gaps = 16/396 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKP +KPY++ D GLYL V +G K W++ Y+ GK K L +G Y ++L Sbjct: 19 LTDTAVKKAKPGDKPYKMADEKGLYLLVNQAG-KYWRMDYRFLGKRKTLALGVYSDVSLA 77 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHK-KQVWSVGYAT 114 AR K AR ++ G DP + +K + NSF A+ +EW+ K K+ W+ A Sbjct: 78 RARQKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQSTAD 137 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + + + P +G L I ++ QLL ++R+ E+RG A + R CG++FRY + T Sbjct: 138 KTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGVAT 197 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSG-SIVSLIATKVLRYTA 232 GRA+ NPA L A+ + P + + AF + L +G V+ A T Sbjct: 198 GRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAYFALLTF 257 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKI---HVVPMSDQVVELLTTLSSITKPVS 289 +R +E R W+ +D++ + + A MK K H VP+S Q + LLT L ++T S Sbjct: 258 VRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGH-S 316 Query: 290 EFVFAGRNDKKK--PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 ++F I EN V ++ ++GY+G + HGFR +I++E W +A+E Q Sbjct: 317 PYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAMERQ 376 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 L H S Y +++L +RR MMQ WAD D Sbjct: 377 LDHKETDSTVAAYARSEHLPERRNMMQAWADTCDAL 412 >UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromonadales RepID=A1SRI6_PSYIN Length = 416 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 178/389 (45%), Gaps = 9/389 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 L+ QI K +K L DG GL L + +G K+WQLR+ I+ K ++ G YP ++ Sbjct: 7 LSDTQIRLTKASDKVITLSDGGGLQLRIKPNGSKLWQLRFNKPIEKKPALMGFGAYPAIS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYA 113 L AR A + ++ GI+P + + NN+F + W + K Sbjct: 67 LANARKLREAANELLAQGINPKAQRDSEIKEKELILNNTFEMVTAAWIKLKASEVKPDSL 126 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + ILP IG I +I +E +R E +G E +A + ++ RYA Sbjct: 127 KTISTTLTNHILPRIGKCPITEITAPMAIEALRPIEAKGNHEVIARACQYLNQIMRYATN 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G NP + + N P + +++P A+AT + ++ +T Sbjct: 187 LGMIHSNPLTGIKGVFMTKKITNNPHVKPEELPQLLMAIATANIKKITRNLILWQLHTMT 246 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W +D+EN + I +K H +P++ Q + +L I+ S+++F Sbjct: 247 RPAETALAQWNEIDYENNLWIIPGERIKTGMTHQIPLTVQTLAILEACKVISGN-SDYIF 305 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + + + + K++GY+G ++ HG R T +++ + E L+H G Sbjct: 306 PADRNPNAHANKASANMAFKRMGYQGRQTAHGLRGLARTTLSDKGVAYEPSEACLSHKVG 365 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 SV YNH+ YL++R ++M WW+++++E Sbjct: 366 NSVSQSYNHSTYLNQRIKIMAWWSNYIEE 394 >UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWC6_JANMA Length = 414 Score = 328 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 134/398 (33%), Positives = 212/398 (53%), Gaps = 19/398 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEK--ILTVGKYPLMT 59 LT +I+AAKPKEKPY+L DG G+YL + SG KVW++ Y+ + + LT G YP + Sbjct: 8 LTDLRIKAAKPKEKPYQLADGEGMYLEILPSGSKVWRMAYRQENRTTSTRLTFGHYPAVG 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L EAR K +K I G+DP +A++ A++ N+F A+ + W+++K + W A Sbjct: 68 LAEARRKRADTKKQIVEGVDPAQARRVEKAISATAAANTFEAVARMWHQNKLEQWQPRTA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + + D+ P+IG I +++ +L+V+R+ E RGA E A + + C ++FRYAI Sbjct: 128 NNILRRLEQDVFPLIGKRPIAEVKAPVMLDVLRQIEKRGAAEIARRNAQVCSQIFRYAIA 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGS--IVSLIATKVLRYT 231 G A+ +P P L A+K K + ++P F + L V+ I +++ T Sbjct: 188 CGIAENDPVPALRGALKPRIKGVHAAILVAELPEFLETLNHNKARMFPVTRILMQLMMLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRK--------IHVVPMSDQVVELLTTLSS 283 +RT EL W VD +N I MK K H V + Q L L + Sbjct: 248 FVRTSELTETPWSEVDLKNEQWVIPWQRMKMGKRKINPRKVDHHVFLPKQGWAFLRELRT 307 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADA 343 T ++++F + D KKPI A+L +K++GY G +GHGFR I+ Sbjct: 308 YTGG-NQWLFPNQRDPKKPISNGAILAALKRLGYAGKHTGHGFRSLAKGILKTLGNDISN 366 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 IE QLAH++G + Y+ +L++R+ MMQ +AD++D Sbjct: 367 IERQLAHSSGEAYGASYDRESFLEERKIMMQGYADYID 404 >UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_SALA4 Length = 449 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 131/404 (32%), Positives = 208/404 (51%), Gaps = 24/404 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMT 59 L +QIE AKPKEK Y++ DG GLYL V G K W+++Y+ KE L G YP +T Sbjct: 32 LNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPTIT 91 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK----ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 L EAR K A+K +S GIDP +K F I ++W+ WS ++ Sbjct: 92 LAEARAKRDAAKKLLSQGIDPKVEQKGAQAEIEGAYLFETIARQWHASNL-TWSEDHSHR 150 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + I P IG ++ + + QLL I+ + G + A + +R + R+ + Sbjct: 151 VLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVNAIMRFGVQND 210 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NPA D+A A+ + + P LP +IP F + L+ + G +++ +A ++ T +R+ Sbjct: 211 LLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLLTFIRS 270 Query: 236 KELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSS 283 E+R W V+FE TI MK + H+VP+S Q ++ L + Sbjct: 271 SEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKRLHA 330 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEHE-WP 340 ++ E +F +D KK + EN V ++ +GY+ GHGFR ++E + W Sbjct: 331 LSG-KGEVIFPSDHDPKKVMSENTVNSALRVMGYDTKTEVCGHGFRTMARGALSESKLWN 389 Query: 341 ADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEK 383 DAIE QL+H +V+G Y H ++YL++RR M+QWWAD++D Sbjct: 390 DDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDAN 433 >UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophilus RepID=Q4QL03_HAEI8 Length = 419 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 122/398 (30%), Positives = 204/398 (51%), Gaps = 17/398 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L++ +I AKPKEK Y L DG GL+L V ++G K+W+ +Y I K ++++G YP ++ Sbjct: 12 LSITEINNAKPKEKDYSLSDGQGLFLLVKMNGSKIWRFQYYKPISKKRTLISLGVYPEIS 71 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L++AR+ R ++ IDP + K + S + KEW KK G Sbjct: 72 LKDAREIRDLYRSLLAKNIDPQDYRLQQEQKAIQERQFTLSEMGKEWLYLKKNEVDTGRL 131 Query: 114 TELA-----KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 E+ K + + ++G I +I +E ++ E G ++ ++ ++ Sbjct: 132 KEVTFIDIGKRLERHLFKVLGHYSISEISAPLAIEKLKPLERAGKLDTLHRIIGYLNQIM 191 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 Y++ G YN D+ +N P + +Q+P + L + I + A ++L Sbjct: 192 IYSVNRGVINYNATADIGRVFIRPIAENNPTIRPEQLPKLFEDLQNSTLEIETRCALELL 251 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK----IHVVPMSDQVVELLTTLSSI 284 TA R + + W+NVDFEN ++ I MKGR+ ++P+S Q V +L L + Sbjct: 252 LLTAGRAGAITQLEWENVDFENSLLNIPKEKMKGRQGKVQDFILPLSKQAVTILRLLQKL 311 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI 344 + S+FVF + + ++PI + + +IGY + + HG R FST MNE E+ ++ I Sbjct: 312 NRCNSKFVFPSKKNPRQPISKETPNKALGRIGYRNILTAHGLRSVFSTAMNEAEFNSEII 371 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 EV LAH SVRG YN A+Y+ +R E MQWW ++++E Sbjct: 372 EVCLAHFEYSSVRGTYNKAKYMPQRIEYMQWWGNFVEE 409 >UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_ACIB5 Length = 427 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 130/392 (33%), Positives = 202/392 (51%), Gaps = 11/392 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTL 60 L+ + +P+ K YR LDG GLY V GKK W RYK DGK L +G YP ++ Sbjct: 29 LSDTVLANLEPESKEYRELDGEGLYFRVKPDGKKAWLFRYKKADGKWSWLGIGTYPELSG 88 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYAT 114 AR KA KDIS G +P+ K+ NN +F + +EW + K W T Sbjct: 89 AGARKKAREIIKDISQGDNPIITKQERKRQELEQNNATFEVLAREWLDTKANTWVKDTMT 148 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR-GAMERANKARRRCGEVFRYAIV 173 + I I G I+P++ + ++ + G E+ N+ R C +++ +A V Sbjct: 149 RNKGALEKHIFAIFGKRLYTSIKPIEWMNHLKGIQQHQGIYEQVNRVRAMCRDIYDFAKV 208 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 TGR YNP L ++ K+N + ++PA +A+ ++ ++ + ++L Sbjct: 209 TGRIDYNPLEGLQKFLQQGVKQNMSHVSEQELPALLRAINSYP-TMDVRMGLQLLAMLFC 267 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R ELR W+ D I I A MK R+ HVVP+ Q + +L L + + SE++F Sbjct: 268 RPTELREAKWQEFDLNQGIWNIPAERMKKRREHVVPLPRQAITILNELKTY-ETNSEYLF 326 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 R+DK KP + ++ ++++GYEG ++ HGFRH ST++N + IE LAH Sbjct: 327 PSRSDKSKPKSDTVFIMALRRMGYEGRQTPHGFRHIASTLLNNRGFDERHIEAALAH-VK 385 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 V G+YN AQYLD R+ M+QW+A+ L+E + Sbjct: 386 DGVAGVYNKAQYLDDRKIMLQWYANHLEEIAD 417 >UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_PSEA7 Length = 395 Score = 326 bits (836), Expect = 7e-88, Method: Composition-based stats. Identities = 137/387 (35%), Positives = 199/387 (51%), Gaps = 9/387 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT AAKPKE+ YRL D GLYL V +G K W+ R+K+ GK +G YP ++L Sbjct: 1 MLTDAHCRAAKPKEQLYRLNDFRGLYLEVKPNGVKAWRYRFKLAGKGSWFALGDYPSVSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKA------KKASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 +ARDK ARK + GI+PV+ K+ + N+F A+ KEW K W Sbjct: 61 ADARDKCEEARKLVKQGINPVQNRQVERIKREQDSANTFEAVAKEWLALKD--WEEVTKR 118 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 M + P IG + ++ I P +L+++ + RGA A +A+R +F A+ T Sbjct: 119 RRLDMLQRVVFPSIGKMPVRQITPAHVLDILSKTAKRGAPTVAAEAKRTMSGIFELAVAT 178 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA +P + A+ + ++ L QI +++ +T R Sbjct: 179 LRADNDPVWPVRKALPANKTQHKTALTTAQIGKLLTDFDNHRCGYQVNFCIQLMWWTLAR 238 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E W D + + +I A MK R+ H+VP+ Q VE+L L +I+ +F Sbjct: 239 PGEAAEAEWAEFDLDKALWSIPARRMKARREHLVPLPRQAVEMLRRLHAISGDR-MHLFP 297 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 GR+D+ KP+ +++ +K +G+ G S HG R ST +NE + DAIE QLAHA Sbjct: 298 GRDDRNKPMSAHSIRQALKALGWSGTYSPHGTRTTGSTRLNEMGYRPDAIEAQLAHAEPN 357 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 SVR YNHA YLD+RREMMQ WAD L+ Sbjct: 358 SVRRTYNHATYLDERREMMQAWADKLE 384 >UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombinase phage integrase family protein n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF6377 Length = 393 Score = 326 bits (836), Expect = 7e-88, Method: Composition-based stats. Identities = 118/390 (30%), Positives = 201/390 (51%), Gaps = 10/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP P +L D GL+L V G K+W+ R+++ GKE +G YP ++L Sbjct: 3 LTAVKIRHAKPGPAPIKLTDSGGLFLEVTPGGNKLWRYRFRLAGKENTYAIGSYPDLSLS 62 Query: 62 EARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + AR+ + +G +P VKA++ S N+N+F + +EW E + ++ Y + Sbjct: 63 DARAERDAARELVKLGRNPAHVRQTVKAQQLSENSNTFKVVAEEWIEKRLANRTLKYRDQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F +D+ P IG +++I Q+L +I + + R A A R+ VF Y +VT Sbjct: 123 IRRAFVNDVYPKIGRFPLREITAAQILVIITQMDKRDATTLALMVRQWISSVFCYGVVTL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA + A+ + + +++ + A+ + G ++IA +L +RT Sbjct: 183 RADSDPAAAVRGAISRKDVNHSRPMNLEELAEYFLAVGKYGGHRGTVIALYLLPLLFVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + I I + MK ++ H+VP+ ++ + LL L S+T +F G Sbjct: 243 VELRLAEWSEFDLDKAIWIIPSGRMKRKRPHMVPLPERAIALLRELRSLT--AGNLLFPG 300 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGG 354 +PI + ++ + G H FR ST + E + W ++AIE+QL+H Sbjct: 301 MKHPSQPISATTLNRALEYMDLRGWHC-HDFRATASTHLYESQLWRSEAIEMQLSHKESD 359 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + YNHA+Y D+R +MM WW L+ + Sbjct: 360 KTKAAYNHAKYWDERSKMMVWWGHRLEPLI 389 >UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepID=Q5E028_VIBF1 Length = 399 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 101/391 (25%), Positives = 190/391 (48%), Gaps = 11/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT ++I++A P K + L DG GL L V +G K WQ ++ + K + + +G YP ++ Sbjct: 8 LTDRKIKSAAPTGKEFTLSDGEGLQLRVRPTGAKSWQFKFSDPVTRKIQKIALGPYPELS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYA 113 L AR K R ++ I+P +++ ++F + ++W+E KK+ S ++ Sbjct: 68 LANARSKTTEYRTLLAQKINPKSFEQSKELEAKRVQTSTFIVVAEQWFERKKETVSPAHS 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + I P + + + I ++ ++V+R E G + + ++ Y++ Sbjct: 128 YREWRTLEKYIFPHMSKIPVATITAVETIDVLRPLEKEGKYSTVKRICQSLNQIMDYSVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALAT-FSGSIVSLIATKVLRYTA 232 G NP + + + P + +Q+P F K L + + + + +T Sbjct: 188 HGLIHANPLAKIIKVFRKNTVLHMPTIRPEQLPDFLKRLHSCSTIQTKTKLLILWQLHTM 247 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R KE + W ++D E + TI A MK RK H +P++ Q + +L + +K ++V Sbjct: 248 TRPKEAATTRWIDIDLEKGVWTIPAENMKRRKEHRIPLTSQAINILNQIRLQSKRC-DYV 306 Query: 293 FAGRNDKKKPICENAVLLVIKQ-IGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 F G D + IK+ +G + HG R ST ++E+ + + IE L+HA Sbjct: 307 FPGERDINSHVSLFTANAAIKRSLGLKDELVAHGLRAIASTALHEYGFDSLLIEACLSHA 366 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + VR YN + YL++R+E+M WW++++DE Sbjct: 367 DQNEVRASYNRSDYLEQRKEIMCWWSNYIDE 397 >UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria RepID=C6XEE3_METSD Length = 406 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 127/395 (32%), Positives = 217/395 (54%), Gaps = 16/395 (4%) Query: 2 LTVKQIEAAKPKEKPY-RLLDGNGLYLYVPVSGKKVWQLRYKID-----GKEKILTVGKY 55 LT A + K +L DG GLYL+V +G K W+ RY I KE L++G Y Sbjct: 5 LTDLACRKATCEGKTLSKLSDGGGLYLWVYANGAKYWRFRYFIHVEGGKKKEMSLSLGVY 64 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWS 109 P ++L +AR +A + + GIDP AKKA ++F+ I +EWY W+ Sbjct: 65 PEVSLNDARVEARKYQGLVDNGIDPATAKKAKLLQTKAEAGDTFAEIAREWYRKMMPTWT 124 Query: 110 VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 +A ++ + + +++P I I ++E + L+ + + ++RGA +++ +V++ Sbjct: 125 ETHARDIERRIEINLIPFIPQKPIAELEAVDFLKPLEKVQERGATHLSHRLLINIRQVYK 184 Query: 170 YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFS--GSIVSLIATKV 227 YAI G+ KY+ P L +A+ + KN P + +++P +A + G + + ++ Sbjct: 185 YAIAKGKCKYDVTPGLGNALIPHVAKNQPAIRPEELPKLMTDIADYHKLGEMKVQLGLQL 244 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 + + LRT+EL W +D+E + + MK + H++P++ QV +L L + + Sbjct: 245 MAHVWLRTRELTFGRWDELDYEANLWRVPGERMKMDRDHLIPLTPQVKVILERLRVLARG 304 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 SE++ GRN P+ N +L + ++GY+ +GHGFR STI+NE + ADAIE Q Sbjct: 305 -SEYILPGRNHLT-PVSNNTLLYALYRLGYKSRMTGHGFRSVASTILNESGFNADAIERQ 362 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH +VR YN A+Y+D+RR+MM WW+++LD+ Sbjct: 363 LAHVPENAVRAAYNRAEYIDERRKMMLWWSEYLDK 397 >UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY10_HALNC Length = 427 Score = 325 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 132/415 (31%), Positives = 206/415 (49%), Gaps = 34/415 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+A KP+ KPY++ D GLYL+V +G K+W+L Y+ +GK K L +G YP + L+ Sbjct: 3 LTDTAIKALKPESKPYKVTDEKGLYLFVTPAGGKLWRLDYRFEGKRKTLALGGYPDVNLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNS-------------------------FSAI 96 +AR AR+ I+ G DP + +KA + F I Sbjct: 63 QARVYRDEARQLIANGTDPAELRKAEKTTITESRREEAEAVKIEAMIQAGEALPGSFEEI 122 Query: 97 YKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMER 156 EW S Y ++ ++ P +G + D+ +L+V++R E RG +E Sbjct: 123 GDEWVNMYLADKSEKYRNKVINRLKAEVYPYLGRAPVADVTAPMVLKVLQRIEARGIIES 182 Query: 157 ANKARRRCGEVFRYAIVTGRAKYNP---APDLADAMKGYRKKNFPFLPADQIPAFNKALA 213 A++ ++ G++ RYAI TGR + A + A A K + I + +A Sbjct: 183 AHRVKQNIGQILRYAIATGRRELFDVTMALNKAIAPMPKDKNHAAPTEPKDIAPLLRIMA 242 Query: 214 TFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQ 273 + GS ++ A + +R ELR M W ++DFE AS K + H+VP++ Q Sbjct: 243 GYRGSPITRAALTIAPCVFVRIGELRHMQWADIDFETFEWRYTAS--KTGQEHIVPLARQ 300 Query: 274 VVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE--GLESGHGFRHEFS 331 VV L L +T S +VF G +P+ EN V +K++G + +GHGFR Sbjct: 301 VVAALIELQPLTGH-SRYVFTGARSDTRPMSENTVNGALKRLGIDTQTELTGHGFRAMAR 359 Query: 332 TIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 T++ E H + + IE+QLAHA + YN ++L+ RR+MMQ WAD+LDE + Sbjct: 360 TVLEEVHNFRPEVIELQLAHAVRDPLGRAYNRTKHLETRRKMMQVWADYLDELRD 414 >UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V414_SPHWW Length = 417 Score = 325 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 132/394 (33%), Positives = 200/394 (50%), Gaps = 12/394 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI AAK +L DG GL L V SG KVW+L+Y+ +GK+K L +G +P + + Sbjct: 3 LTHIQIAAAKASNGALKLSDGRGLTLVVQPSGSKVWRLKYRYEGKQKTLHLGHWPKVGIS 62 Query: 62 EARDKAWTARKDISVGIDP--------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 EAR + ARK I G DP V AK NSF A+ +EW E ++ Sbjct: 63 EARIRREDARKLIEEGTDPALVKRFGPVAAKVKIVAGNSFRAVAEEWLEKCEREGLSQVT 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + D P +G I+ I P+ L V+++ E G +E A + R +FR+A+ Sbjct: 123 LNKIRWLLDKAYPALGSKPIEVIRPLDALAVLKKLEAEGILESARRLRSVLSRIFRFAVA 182 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGR + + A DL A+ + KN + A + +A+ +SG ++ IA + + Sbjct: 183 TGRIERDVAADLRGAIATPKGKNLAAITTAREAGVLLRAIENYSGHEITAIALECSAHLF 242 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R ELR W +D + I I K R+ H VP+S Q++E L L +T +++ Sbjct: 243 VRPGELRQAEWPELDADEAIWAIPPEKTKMRRPHWVPLSRQMMEKLHRLHDLTGG-GKYL 301 Query: 293 FAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAH 350 F + P+ EN V L ++++G+ + + HGFR +T++NE W DAIE QLAH Sbjct: 302 FPCLGNDDMPMSENTVNLALRRLGFGQDQMTAHGFRAMAATLLNESGQWHPDAIERQLAH 361 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 VR Y +Y +R MMQWW+D ++E Sbjct: 362 IETNEVRRAYTRGEYWPERVRMMQWWSDHIEELR 395 >UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A1WW57_HALHL Length = 412 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 117/396 (29%), Positives = 193/396 (48%), Gaps = 15/396 (3%) Query: 2 LTVKQIEAAKPKEKPY--RLLDGNGLYLYVPVSGKKVWQLRYKID-GKEKILTVGKYPLM 58 LT +Q AKP E +L DG GL L V +G K WQ RY+ G+E + +G YP + Sbjct: 8 LTDRQCRTAKPPEGKQQLKLTDGGGLVLLVKSNGGKQWQFRYRRPSGREATMGLGVYPDV 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEH-KKQVWSVG 111 L +AR++ AR ++ GIDP+ +KA + +SF A+ +EW++ + Sbjct: 68 PLSKARERRDEARALLADGIDPIDQRKAQRSAAASADTHSFEAVAREWWDAVHRHKVVAS 127 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 +A + + P +G + IEP +LE +RR E +E A++ + G+V RYA Sbjct: 128 HANRNLRRLEQYAFPKLGRRPVSAIEPPDVLEALRRIEALEHVETAHRVKTLIGQVCRYA 187 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRY 230 I TGR +P DL ++ + ++ P + ++ +A+ + G + A ++ Sbjct: 188 IATGRGSRDPTADLRGMLRSPKTRHLPAITEPAELGPLLRAIDGYRGQPTTRAALQLAPI 247 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 R ELR+ W+ D + D K V P+ Q + +L L I++ S Sbjct: 248 VFCRPGELRAAEWQAFDLSSGTW--DYQPSKDGDPLVTPLPRQAISILRELEPISR-SSR 304 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLA 349 ++F +PI +N + +K++ Y G HGFR TI+ E W + +E+QL Sbjct: 305 YLFPSGRTPDRPISDNTLTAALKRLDYGGRMVAHGFRAAARTILVERLGWGIEIVEMQLG 364 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 H + YN Q++++R M+Q WAD+LDE E Sbjct: 365 HRVRDAHGRAYNRTQWIEQRGVMLQQWADYLDELRE 400 >UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B120_SULD5 Length = 419 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 119/406 (29%), Positives = 201/406 (49%), Gaps = 25/406 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 LT +++ +K +EK YRL DG GLYL V +G K W+L Y + +G +++G YP +TL Sbjct: 8 LTDTELKKSKIQEKTYRLTDGAGLYLLVEPNGSKGWRLDYTRPNGGRNTISLGTYPTITL 67 Query: 61 QEARDKAWTARKDISVGIDPVKAKK----------------ASSNNNSFSAIYKEWYEHK 104 EAR+K +K I G+DP +K N+F + ++++E Sbjct: 68 CEAREKRDELKKQIKKGVDPSLERKGVKELQREEKEADHAEEERKQNTFEKVARDFFESI 127 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 Y + ++ I P +G + I + + ++E + R + +E A + Sbjct: 128 TIELVPKYHSSKLARLENHIFPYMGNIPIDQVSRLMIIEHLERLKAANKIETARRILNII 187 Query: 165 GEVFRYAIVTGRAKYNPAPDLAD--AMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVS 221 +V+RYA+ A +N D+ + ++FP + +I + + + G I + Sbjct: 188 EQVYRYAVTHELAPHNIIADIDKRYVIGKKEVRHFPTITDPVEIGKLVRMIDEYPGDIST 247 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTL 281 A K+ TA R +R W D E + I A MK ++ H++P+ Q+ +L L Sbjct: 248 KYALKLAILTAQRPYNIRFAEWNEFDLERDVWQISAEKMKMKRPHIIPIILQIKTILREL 307 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMN----E 336 TK S+++F +PI EN + ++++GY E HGFR FSTI N E Sbjct: 308 EPFTKNRSQYLFPALTSNVRPISENTMNQALRRLGYTKEEIVSHGFRAMFSTIANEHIPE 367 Query: 337 HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 H + +D IE LAH+ +G YN A+YL++RR +++WWA++LD+ Sbjct: 368 HGFHSDIIERHLAHSEQNKTKGAYNRAEYLNERRGLIEWWANFLDK 413 >UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5EXV7_DICNV Length = 401 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 138/395 (34%), Positives = 213/395 (53%), Gaps = 20/395 (5%) Query: 2 LTVKQIEAAKPKEKPY-RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT K I+ AK + Y RL DG+GL L + G W RY I+G+E+ +++G+YP M++ Sbjct: 12 LTDKIIQTAKKPSRGYLRLTDGDGLSLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSI 71 Query: 61 QEARDKAWTARKDISVGIDPVKAKK---------ASSNNNSFSAIYKEWYEHKKQVWS-V 110 + AR +A R + G+DP+ +K + +F + +EWY+ K+ W Sbjct: 72 EAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNE 131 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 +A ++ + + P IG I I P +LL+V+ + DR E A++ ++R VF Y Sbjct: 132 KHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVFDY 189 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 AI T R NPA L + K P LPA ++ F K L T+ G+ + +A ++L Sbjct: 190 AIQTDRLSRNPAIALPKIFRSTIAKQ-PSLPARELGIFFKQLDTY-GNPKTALALRLLIL 247 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T R+ ELR W+ + I A MK + H+VP+SD +E+L L S+ + S Sbjct: 248 TMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNSP 305 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLA 349 + G ++ P+ + + L +K++GY G HGFR ST MNE W DAIE QLA Sbjct: 306 YFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLA 363 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H + +VR YN A+YL++R MMQWWAD++ +K+ Sbjct: 364 HTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKI 398 >UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=Q48NQ4_PSE14 Length = 391 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 197/386 (51%), Gaps = 10/386 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP + +L D GLYL V G K+W+ R+++ GKE +G YP ++L Sbjct: 3 LTDLKIRQAKPGKTSSKLTDSGGLYLEVTTGGSKLWRYRFRLAGKENTYAIGAYPEVSLS 62 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + AR + G +P KA++ + N N+F + +EW E + + Y + Sbjct: 63 DARTERDAARDLVKSGRNPAHVRQTEKAQQLTENRNTFKIVSQEWIEKRLAQRTQKYRDQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F +D+ P IG L +++I Q+LE+I + R A A R+ VF Y + T Sbjct: 123 IERAFVNDVYPRIGRLPLREITAAQVLEIITAMDRRNATTLALMVRQWISAVFCYGVATL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA + A++ + + ++ + +A+ T+ G ++IA +L +RT Sbjct: 183 RADSDPASAVRGAIRRNEVNHSRPMSLIELREYFRAVKTYGGHRRTVIALYLLPILFVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + + TI A MK RKIH+VP+ + + LL L IT +F G Sbjct: 243 IELRLAEWSEFDLDAALWTIPARRMKKRKIHLVPLPESALALLRELREIT--AGNLLFPG 300 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGG 354 K+PI + ++ + +G H FR ST + E E W +D IE QLAH Sbjct: 301 MRHPKEPISATTLNRALEYMDLKGWHC-HDFRATASTHLYESELWSSDVIEFQLAHVEQK 359 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWL 380 + YNHA YL R+ +MQWW +++ Sbjct: 360 KSKAAYNHASYLPARKALMQWWDNYI 385 >UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteriaceae RepID=B7N6K6_ECOLU Length = 415 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 108/390 (27%), Positives = 183/390 (46%), Gaps = 12/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMT 59 LT +I AKP+ Y L DG GLYL V SG+K W Y K ++G YP++T Sbjct: 8 LTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVT 67 Query: 60 LQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVW--SVG 111 L AR+ R+ + GIDP + +K N + + ++W + KK+ S Sbjct: 68 LAMARETRTKYRRLLWQGIDPRQHLAGIAEEKRLQNECTLEKVAEQWLKEKKRTSDLSED 127 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 +A ++ + + + P +G + +I P L E + E++G +E + R E+FR+A Sbjct: 128 HAKDVWRSLEMHVFPSLGSTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFA 187 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 I ++NPA +L K +K+N P LP ++ AL S + + T Sbjct: 188 ISEELIEFNPADNLVARFKKPKKQNMPALPPSELGRLMLALQNASIRKETRCLIEWELLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R E S W ++D + I + MK + H VP+S Q + +L + +++ + Sbjct: 248 WVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHR-PW 306 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF + + + + ++G+ G HG R T H +P + +E LAH Sbjct: 307 VFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGH-FPREVLESALAHQ 365 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + YN + YL++RR +MQWW +++D Sbjct: 366 KEDEIEAAYNRSDYLEQRRPLMQWWGNYVD 395 >UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRV8_BORPD Length = 402 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 109/391 (27%), Positives = 191/391 (48%), Gaps = 15/391 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + ++ A+PK+ PY+L DG GL+L V +G ++W+ ++++ GKE++ +G+YP + L Sbjct: 10 LSDRAVKNARPKDAPYKLADGGGLHLLVQPNGSRLWRYKFRLGGKEQVFAIGRYPDVGLA 69 Query: 62 EARDKAWTARKDISVGIDPVKAKK----------ASSNNNSFSAIYKEWYEHKKQVWSVG 111 EAR++ AR+ ++ G+ P ++ A + +F A+ W + + Sbjct: 70 EARERHLAARRLVADGVSPTAQRRDDRARMAEDAARAKAGTFKAVLDSWKATPARALAPA 129 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + + D + P +G + +I +L ++++ E A R +F +A Sbjct: 130 TIRQRDREIDRYLEPKLGARPVGEITRRELADLLKTV-ATDTPEVARNLRTHMNSIFEHA 188 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + G NP P A+ ++ + P + D++ A ++ + + A ++L T Sbjct: 189 VDVGLIAGNPTPG-PRALPARKQTSHPAVAMDELGALLASIDASACQPATKAAFRLLLLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 A R E+ S W +D + I A MK R H VP+S Q VELL + + + ++ Sbjct: 248 ACRKLEITSGRWDEIDLDAGEWLIPADRMKTRTAHWVPLSRQAVELLRAVRAHSG--GDY 305 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAH 350 VF R+ P+ A+ +++++GY + HG R FST N D IE LAH Sbjct: 306 VFPHRDKPNTPMSPTALNEMLRRVGYRREMTVHGTRSIFSTWANAQPGANVDVIERCLAH 365 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 A VR YN Y D+RR ++Q WAD LD Sbjct: 366 APRDKVRAAYNRHAYKDERRALLQSWADVLD 396 >UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LIX3_RHOVA Length = 392 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 122/387 (31%), Positives = 207/387 (53%), Gaps = 9/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ +I KP E+ ++L D +GLYL V +G K+W+L Y+ GK K L +GKYP + L Sbjct: 3 LSDLKIRTTKPTERDFKLSDADGLYLLVRPNGSKLWRLNYRHLGKNKTLAIGKYPDIALS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 ARDK AR+ ++ G+DP K+ + N+F A+ +E+ + S G Sbjct: 63 TARDKRAEARRLLAEGVDPSYRKQVEVAKAKVAAANTFEAVAEEYLASLARDRSEGTVRA 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + P++G I ++ P ++LE ++ EDRG ++ A++AR G+VF+ A ++ Sbjct: 123 NSHILRKKVYPLLGRRPIAELRPHEILEALQSIEDRGQVDMAHRARTLIGKVFQLAALSD 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFN-KALATFSGSIVSLIATKVLRYTALR 234 RA +P L +K +R +N + ++Q A + + T+ GS A L +T +R Sbjct: 183 RAPTDPTVVLRGRLKSWRVQNRASVTSEQTFAPLLRRIDTYEGSPNVRAAMLFLAHTFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T ELR W +D E+ + I MK + H VP++ +L ++ + +++F Sbjct: 243 TVELRFATWSEIDLEDGVWRIPEERMKMGRPHDVPLTASTRAILRDMAKFRR--GDYIFV 300 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + K + + + +K IGY+G + HGFR S+I+NE + +D IE+QLAH Sbjct: 301 SAHVGKSVLGDGTLRKAMKSIGYQGRMTPHGFRSSASSILNERGYRSDVIEMQLAHVEKN 360 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 +VR YN Y ++R MMQ W++ +D Sbjct: 361 AVRRAYNRTLYWNERVSMMQDWSNLVD 387 >UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammaproteobacteria RepID=A7ZQ61_ECO24 Length = 436 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 114/396 (28%), Positives = 186/396 (46%), Gaps = 15/396 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPV---SGKKVWQLRY--KIDGKEKILTVGKYP 56 LT +I++ KP EK L DG+GL L + GKK W RY + K +++G YP Sbjct: 35 LTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTKVSLGTYP 94 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVW-- 108 +TL +AR ++ GIDP +N ++F A+ K+W + K + Sbjct: 95 HLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDEKVKTSGI 154 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 S +A ++ + + +I +G I++I P L + + E RG +E + R E+F Sbjct: 155 SQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRIISRLNEIF 214 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 RYA ++NPA +L +K+N P LP ++P F AL S + + + + Sbjct: 215 RYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLETRLLIEWQ 274 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 T +R E W ++D E + I A MK +K H VP+S + + +L + I+ Sbjct: 275 LLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLMKVISGHR 334 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQ 347 E+VF + E I ++G+ G HG R T E + D +E Sbjct: 335 -EWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRTDVLEAA 393 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 LAH+ + YN A+YL +R +MQWW+D++ + Sbjct: 394 LAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVSSQ 429 >UniRef50_B6BKY5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKY5_9PROT Length = 400 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 133/391 (34%), Positives = 198/391 (50%), Gaps = 16/391 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI+ AK KEK Y L DG GLYL V ++G K W+ RYK + K K +++G YP TL Sbjct: 8 LTETQIKNAKAKEKTYILSDGAGLYLEVNINGGKWWRFRYKYNDKIKKVSLGVYPDTTLA 67 Query: 62 EARDKAWTARKDIS-VGIDPVKAKKASSNNNSFSAIYKEWYEHK----KQVWSVGYATEL 116 AR K AR ++ DP ++EW E S + T Sbjct: 68 NARRKRDEARNILANDNRDPFIKIVVHKKEEVVQKTFQEWAEWYITEISTELSDTHITRT 127 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT-- 174 K F D+ PIIG + DI+ +++++ ++RGA+E A K VF A+ Sbjct: 128 VKGFKKDVYPIIGSKRMNDIKARDIIKIMHIMKERGAVESARKTFSSINRVFAKALSNFP 187 Query: 175 GRAKYNPAPDLA--DAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYT 231 NP D+ D + + N+P + ++ KA+ ++G +++A ++ +T Sbjct: 188 DEIDRNPTADIKLGDILGAKQTTNYPIITEPKELATLLKAIKEYTGDTSTILALTMIAHT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R +R W +DF + I AS MK +K +VP+S QV+ELL S S Sbjct: 248 FVRPINIRLARWDEIDFNTKQWVIPASKMKTKKELIVPLSKQVIELLKEAKS----DSAL 303 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHE-WPADAIEVQLA 349 VF K P+ +NA++ ++++GY E H FR FSTI +E + D IE QLA Sbjct: 304 VFPSIRSKTSPMSDNALVGALRRMGYSREEIVAHSFRGIFSTIAHEKGIYAHDVIETQLA 363 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 H G SV YN A+YL++R +MMQWW+D+L Sbjct: 364 HTVGSSVSQAYNRAKYLEERTKMMQWWSDYL 394 >UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QA94_PSYCK Length = 413 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 126/391 (32%), Positives = 211/391 (53%), Gaps = 12/391 (3%) Query: 2 LTVKQIEAAKP------KEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKY 55 LT I +P ++P + DGNGL L+V +G K W Y+ GK++ LT+G Y Sbjct: 3 LTHTVINKLQPSSTSIDTKRPDKHSDGNGLQLWVRYTGVKSWISAYRWQGKQQTLTIGTY 62 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNS----FSAIYKEWYEHKKQVWSVG 111 P+M+LQ AR + ++ I+ G++P KK + F I + WY +K + Sbjct: 63 PVMSLQNARQRNIEIKRLIADGVNPKDHKKEQQASQDGLNIFDNIAQSWYAERKTYLAES 122 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 T + D+ P IG I DI +L + + E RGA E A + R G++F++A Sbjct: 123 TFTRNYSAYMRDVKPSIGQKNINDITAPDILAIGKAVESRGANEMARRTIREVGQIFKHA 182 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 I G A +NPA DLA+A+K ++ N + + Q+P + + G ++ + L YT Sbjct: 183 IRNGLATHNPATDLAEAIKPHKTTNHHRITSQQLPKLLTDINAYQGDVLVKLGLWFLCYT 242 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +RT E+R M W +D+++ + I A MK +++H+VP++ Q + +L + + ++ Sbjct: 243 FVRTNEIRFMEWSEIDYKHGLWRIPADKMKAKRLHIVPLAPQAMAILEQIKEL-GFSDQY 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF + +K P ++A + + +GY+G +GHGFR ST ++E E+ +AIE+QLAH Sbjct: 302 VFFNTSTRK-PYSQSAFINALWNMGYKGKMTGHGFRGLASTTLHEKEFMHEAIELQLAHD 360 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + YN AQ+L R +MM WA+++D+ Sbjct: 361 RENKISAAYNGAQHLPYRIDMMHQWANFIDD 391 >UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellaceae RepID=B3GXJ8_ACTP7 Length = 406 Score = 320 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 102/393 (25%), Positives = 181/393 (46%), Gaps = 13/393 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L ++E AK K Y L DG GLYL V S K W Y+ I + LT+G YP ++ Sbjct: 8 LNNTEVEKAKIKPAEYSLSDGYGLYLRVKPSKVKTWIFNYQEPITKRRTNLTIGDYPAIS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYA 113 + EAR R ++ GIDP K+ N+N+F + + W E + + Sbjct: 68 IAEARTIREEYRALLAKGIDPKTNKEEQERQQAEQNDNTFLKLAQLWKEKRSKEVEPLTM 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + ++ + P++G I I P L++ ++ D+G + ++ ++ Y + Sbjct: 128 AKNWARLENHLFPVLGHYAIDKITPPILIKAVKPLNDKGINDTLHRILNLANQILNYGVT 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G +N +++DA + + P + ++P + ++ + K + + Sbjct: 188 VGVLPFNACQNVSDAYHKETQTHHPAIKPSELPKLIADFQNSNRDFLTKVLFKWQLLSMV 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRK----IHVVPMSDQVVELLTTLSSITKPVS 289 R E S+ W +DF+ + I A MK + H VP+S Q++++L +L IT V+ Sbjct: 248 RPAEAVSIEWAEIDFDKNLWFIPAEKMKKTRKGQFPHTVPLSSQMLKILESLRPITG-VN 306 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 +FVF + K + + + +++IGY G++ HG R T + + A E LA Sbjct: 307 KFVFPHYSQPNKSMSKETITNALRKIGYRGIQDSHGLRSIARTYLEDQAVDFRAAESCLA 366 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 H G YN A+Y++ RR +MQ W D+ + Sbjct: 367 HRIGNETSQAYNRAEYIELRRPLMQLWGDYCES 399 >UniRef50_A4VPC8 Site-specific recombinase, phage integrase family n=6 Tax=Proteobacteria RepID=A4VPC8_PSEU5 Length = 455 Score = 319 bits (818), Expect = 8e-86, Method: Composition-based stats. Identities = 108/393 (27%), Positives = 187/393 (47%), Gaps = 16/393 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +LT +I++ KP ++ ++L DG GL+L V +G K+W+ +Y++ GKE + +G +P ++L Sbjct: 57 LLTDAKIKSVKPTDRDWKLSDGGGLFLLVKPTGCKLWRWKYRLQGKENLFAIGSFPQVSL 116 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSN-------------NNSFSAIYKEWYEHKKQV 107 EAR AR + GI P ++ +SF+ + + + K V Sbjct: 117 AEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRARESSFAKVAQAYLTEIKPV 176 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 ++ + P G+ + DI Q+ ++ + GA A + + Sbjct: 177 FAYSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKTHGAWA-AIHVKGDLSAI 235 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 F +A+V G + NP P L ++ ++ + +QI F +AL + G + + ++ Sbjct: 236 FEFAVVRGLVEANPIPSLRGLLRAPASESKAAMTREQIQKFYQALRGYRGYPETALCLRL 295 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 + TA R E W+ DFE+ + A+ MK R+ H+ P+S Q + +L L IT Sbjct: 296 IALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARRDHISPLSTQAIAVLKGLQRITGG 355 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 ++F R+ K N + ++ + + H +R FST NE+ + DAIE Q Sbjct: 356 -GRYLFPHRSGKGFT-TPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIERQ 413 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 LAH VR YN A LD+RR ++Q WA +L Sbjct: 414 LAHVESNKVRATYNKALLLDQRRSLLQAWAGYL 446 >UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacteria RepID=B0RRY6_XANCB Length = 409 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 144/393 (36%), Positives = 210/393 (53%), Gaps = 15/393 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT I AKP P +L DGNGLYL + G + W+ Y+ + GK L+ G YP ++ Sbjct: 3 LTDTAIRRAKPAATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPEVS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYA 113 L +AR++ AR+ ++ IDP + +KA NSF + +EW+ +++ WS YA Sbjct: 63 LADARERLAEARRLVAAKIDPGEQRKAVKAAGEAAAANSFEVVAREWFAKQQKEWSPQYA 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + DI P IG I I +LL+ + R E RGA+E A++A + CG VFRYA+ Sbjct: 123 EKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQRGAIETAHRALQTCGAVFRYAVR 182 Query: 174 TGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGRA+ +P L A+ +R F +++ + + + V A ++ Sbjct: 183 TGRAEADPTGALKGALTPWRSMPFAAATTSEEATTVLRKIDISTSRPVVRSALRLAPLLF 242 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R EL M W +D + V K ++ H+ +S Q +E+L L +T EFV Sbjct: 243 ARPGELVRMRWTELDLDAGQWRY--FVTKTKRTHIAALSTQAIEILRDLHPLTG-RGEFV 299 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHE-WPADAIEVQLAH 350 F G D +K + NA+L+ ++ G E E + HGFRH ST++NE W DAIE L H Sbjct: 300 FPGGRDPRKHMSGNAILVAARRCGIEKDESTIHGFRHMASTLLNEMGHWNPDAIESALTH 359 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 G VRGIYN AQYLD+RR+MMQ WAD LD Sbjct: 360 KMPG-VRGIYNQAQYLDERRKMMQSWADNLDTL 391 >UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria RepID=B1Y3M2_LEPCP Length = 433 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 128/417 (30%), Positives = 202/417 (48%), Gaps = 35/417 (8%) Query: 2 LTVKQIEAA-----KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYP 56 L K I AA K + RL DG+GL L V +G W+ RY+ GKE +L++G YP Sbjct: 7 LDDKSIRAAIKRAMKAQAGE-RLTDGDGLRLDVQPTGSAWWRWRYRFGGKEGMLSLGTYP 65 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSNNN------------------SFSAIYK 98 +L AR + AR+ ++ GI+P +A+K +F + Sbjct: 66 DTSLSAARGRRDEARERLAAGINPSEARKDDKAAQALKAEAARLAAAGLPGPGTFEHAAR 125 Query: 99 EWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERAN 158 EW+ WS G+A ++ + +D+ P IG + ++ P +LL+ RR E RGA+E A Sbjct: 126 EWHARMAPSWSEGHAGKVLALLVNDLFPFIGTSALAELTPPELLKHARRIEARGAVETAY 185 Query: 159 KARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSG 217 +A + G VFR+ + G +P DL A+ ++ + ++ +A+ + G Sbjct: 186 RALKAAGAVFRHGVQNGYCDSDPTRDLKGAIVLPVPEHRAAITDPARLGELLRAIDGYQG 245 Query: 218 SIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR-------KIHVVPM 270 + V A + LR ELR W D + + TI A+ MKGR HVVP+ Sbjct: 246 TPVVRSALALAPLVFLRPGELRKAEWAEFDLDAAVWTIPAARMKGRLKAKLNGPDHVVPL 305 Query: 271 SDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHE 329 + Q +L L +T ++VF +P+ +N VL ++++G+ + +GHGFR Sbjct: 306 APQAAAILRDLQPLTG-AGKYVFPNPLTPDRPLSDNGVLSALRRMGFDKDEMTGHGFRAT 364 Query: 330 FSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 TI E + +E QLAH ++ YN QYLD+RR+MM WAD+LD + Sbjct: 365 ARTIAAERLKIDPVVLEAQLAHVVADALGRAYNRTQYLDQRRDMMTRWADYLDRLRK 421 >UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR6_9SPHN Length = 428 Score = 318 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 203/399 (50%), Gaps = 18/399 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I++ P +P + DG GL + V +G++ W Y+ K+K +T G YPLM++ Sbjct: 1 MLTDTLIQSIIPAARPIKKADGGGLNICVLPNGRREWCFSYRFHHKQKSITGGDYPLMSI 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA-----SSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR + +S G DP K+ + +F + EW K+ WS YA Sbjct: 61 DRARVWREEMKAALSAGKDPANIKRQLKYEDQAERTTFRQLAYEWMVAKRPGWSDRYAGV 120 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + DI P IG L ++ I P +L ++ EDRGA E A++ R C E+FR+ I G Sbjct: 121 IERRLEADIFPTIGKLSVRSILPRDMLGALKCIEDRGATEMAHRVRAYCSEIFRFGIPDG 180 Query: 176 RAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 R +P DL M+ + +P ++P F AL +GS +S +A + T +R Sbjct: 181 RVLTDPCRDLGTVMRKRAAVTHRSKIPIKELPHFYAALNADTGSRLSHLALRWTILTMVR 240 Query: 235 TKELRSMLWKNVDFENR---IITIDASVMKGRKIHVVPMSDQVVELLTTLSSI------- 284 T E R W + + I A MK R H+VP+ Q V LL + + Sbjct: 241 TTETRHAQWSEFEGLGGPEPLWRIPAERMKMRVEHLVPLPPQAVALLREIKELNVYGKYG 300 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADA 343 + +++F ++ I N +L++++++G + HGFR ST++NE + D Sbjct: 301 NERFGQYLFPVIGNQGDTISSNRMLVLLQRLGVGDKATVHGFRSIASTVLNETGLFKPDW 360 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 IE+QLAH G VR +YN A+YL RR+M++WWAD+LD+ Sbjct: 361 IELQLAH-VPGGVRAVYNAARYLSHRRQMLEWWADYLDK 398 >UniRef50_Q4K6S7 Site-specific recombinase, phage integrase family n=4 Tax=Proteobacteria RepID=Q4K6S7_PSEF5 Length = 413 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 132/391 (33%), Positives = 190/391 (48%), Gaps = 11/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 L + +P+ K YR LDGNGLY V G K WQLRY + G + +G YP ++ Sbjct: 11 LADTTLTGLEPEAKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSG 70 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKK-QVWSVGYA 113 AR+KA RK IS GIDP++ K+++ +F A W + K+ + + Sbjct: 71 ALAREKAAELRKTISSGIDPLEQKRSAKAAIDAAKTRTFRAAADAWLKAKEEKGLAPSTL 130 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ D DILP +G + +I E+ E R A A K R ++F AI Sbjct: 131 NKIRTYLDKDILPALGDKPLDEITRTDCAELQASIEARDAHNVAEKCRTWINQIFGRAIG 190 Query: 174 TGRAKYNPAPDLAD-AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G + +P L D A + + + P L ++ F AL + + A + +TA Sbjct: 191 LGLTENDPGSRLRDIAAQAPKTQQHPHLLEPELGEFLTALKNTPSRLTARTAAWLCIWTA 250 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R +R WK D + T A+ MK R+ V P+ Q + L L +T S ++ Sbjct: 251 SRPGMVRLAEWKEFDLDKATWTTPAAKMKMRRDFVCPLPHQAIAALKELHCLTG-RSRWL 309 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 F G K I EN + V IGY+G GHG RH ST++ EH WP + +E QLAH Sbjct: 310 FPGVGAKNPTISENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQLAHKE 369 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 G + G+YN AQYL++R MMQW+AD LD Sbjct: 370 EG-ISGVYNKAQYLEQRITMMQWYADHLDAL 399 >UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacteria RepID=B1Y4T5_LEPCP Length = 427 Score = 316 bits (809), Expect = 9e-85, Method: Composition-based stats. Identities = 119/389 (30%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 1 MLTVKQIEAAK-PKEKPY-RLLDGNGLYLYVPV------SGKKVWQLRYKIDGKEKILTV 52 MLT + AK P+ + + RL D GLYL V SG K+W+ +Y+ GKEK+L + Sbjct: 1 MLTDTECRNAKCPEGRAFVRLADAGGLYLEVKPPGAKTPSGSKLWRWKYRHGGKEKLLAI 60 Query: 53 GKYPLMTLQEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQ 106 G YP +++ AR + AR + G DP +A+K + + SF A+ ++W+ K Sbjct: 61 GAYPAVSVAGARREQAKARALLDAGTDPGEARKEAKYAKLNEHETSFEAVARQWWAGWKA 120 Query: 107 VWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGE 166 + YA + + + D P+IG + + + + ++ E RG E A + G+ Sbjct: 121 NKTERYAEYVLRRLELDAFPVIGAKPVAGLTAPDFVRMAKKIEARGVGELARRIMETSGQ 180 Query: 167 VFRYAIVTGRAKYNPAPDLA--DAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 V R+A+ G + NP D+ D +K +NF + A ++P + + + GS+ + +A Sbjct: 181 VMRWAVAHGLTERNPTADVKPGDILKPRTVENFARVGAAELPDLMRHINAYDGSVFTRLA 240 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVM--KGR----KIHVVPMSDQVVELL 278 +++ T +RT EL W+ D + TI + KGR + H+VP++ Q + +L Sbjct: 241 LQLMALTFVRTSELIGAQWQEFDLDAAEWTIPPDRIGRKGRQGERRAHLVPLAPQALAVL 300 Query: 279 TTLSSITKPVS----EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM 334 L S +F G D ++P+ N +L ++++GY+G +GHGFR ST + Sbjct: 301 RLLQSARGADRCRGPALLFPGERDHERPMSNNTMLKALERMGYKGKMTGHGFRGIASTAL 360 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHA 363 NE + D IE QL+H G VR YNHA Sbjct: 361 NEMGFRFDVIEAQLSHIEGNRVRAAYNHA 389 >UniRef50_A6QCY9 Site-specific recombinase, phage integrase family n=2 Tax=Proteobacteria RepID=A6QCY9_SULNB Length = 409 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 126/393 (32%), Positives = 213/393 (54%), Gaps = 14/393 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K+I+AAKPKEK Y+L DG GLYL + G+K W+L+Y+ DGKEK +++G YP +LQ Sbjct: 8 LTDKEIKAAKPKEKEYKLFDGGGLYLSITPKGQKWWRLKYRFDGKEKRISLGVYPNTSLQ 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN---------NSFSAIYKEWYEHKKQVWSVGY 112 +AR + + I+ GIDP + +K N+F +I EW E ++ + Sbjct: 68 DARQQREDFKTQIAKGIDPSRERKEKKEAVKAEVFKSRNTFKSICLEWIELQRPQMAEAT 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + + D +G + DI L+ + + +DRGA+E A+++ C ++RYA+ Sbjct: 128 LSKYERTLEKDFYAPLGDKSMNDITRHDLITIAQVIQDRGAVETAHRSLGLCNRIWRYAL 187 Query: 173 VTGRAKYNPAPDL--ADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLR 229 + +N D+ D ++ Y+ K+F + + +I A+ ++G + A ++L Sbjct: 188 QFDKVGHNIVSDISKKDVLRSYKNKSFKTITDEVRIGELMNAIDNYTGEFTTKSALRLLP 247 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 T +R +R W D EN I TI A MK +K H +P++ Q V++L + T Sbjct: 248 LTFVRPHNIRYAEWSEFDLENGIWTIPAEKMKMKKEHKLPLAPQAVKILKEIYPYTNDA- 306 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQL 348 ++VF + K I EN + + +K++ + G HGFR FST+ E + ++ IE L Sbjct: 307 KYVFHSPISRLKAISENTLNMALKRLDFGGEIVSHGFRAMFSTLAYESGKFRSEVIEDLL 366 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AH V+ YN A Y ++RE+++W+AD+L+ Sbjct: 367 AHQEANQVKKAYNRAAYDAEKREIVEWYADYLE 399 >UniRef50_B7I6Z3 Site-specific recombinase, phage integrase family n=3 Tax=Moraxellaceae RepID=B7I6Z3_ACIB5 Length = 414 Score = 313 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 122/399 (30%), Positives = 196/399 (49%), Gaps = 20/399 (5%) Query: 2 LTVKQIEAAKPKE-KPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLM 58 LT +I+ AK + K +L DG+GLYL + + K W+ Y K + G YP + Sbjct: 8 LTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIGFGSYPEV 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGY 112 +L +AR K AR ++ IDP +K + +F+A+ EW KQ ++ Sbjct: 68 SLADARSKRDEARTLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEWES--KQDFAEST 125 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ I IG I + P+++L + R +E +G +E A K + +CG++ RY + Sbjct: 126 IRGHKRLLQ-VINSNIGKKPIDKVTPVEVLNICRIYEKQGKLETAKKVKVKCGQIMRYGV 184 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYT 231 TGR + + DL A+K + K+ L + + + G+ ++ +A K+ Y Sbjct: 185 ATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMALKIAPYV 244 Query: 232 ALRTKELRSMLWKNVDFENRII--TIDASVMKGRKIHVVPMSDQVVELLTTLSSIT---K 286 +R ELR W ++D E + T + K H+VP+ QV LL + +T Sbjct: 245 FVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIKELTYDPD 304 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNE-HEWPADAI 344 SE+VF K KP+ EN + ++++GY + GHGFR TI+ E +P + I Sbjct: 305 GESEYVFPSMTSKLKPMSENTINQALRRLGYTSEQVCGHGFRASARTILEEVLNYPIEII 364 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 E QLAH YN ++L+KRREMMQ WAD+ D+ Sbjct: 365 EQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYCDQI 403 >UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IGA6_BORPD Length = 657 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 128/406 (31%), Positives = 207/406 (50%), Gaps = 26/406 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + AK K Y L D + L L V +G K W RY GK+K + +G YP ++L+ Sbjct: 17 LSDLIVRQAKTTGKRYTLYDNDCLSLMVSAAGGKSWMFRYSWLGKQKRMALGGYPALSLR 76 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVG---Y 112 EAR + A+ I+ GIDP + + +F ++ W EH+++ G Sbjct: 77 EARAERDKAQALIARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQST 136 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 +++ ++F+ D+LP +G + I DI QLL V+ E R A A K R ++FRYA+ Sbjct: 137 LSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQMFRYAL 196 Query: 173 VTGR-AKYNPAPDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFSGS-IVSLIATKVLR 229 V + NPA DL A + P+L ++P F + L ++ + + ++L Sbjct: 197 VIAEGLEVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRLLF 256 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMK-----GRK---------IHVVPMSDQVV 275 T +RT ELR + D + I V+K RK ++VP+S Q + Sbjct: 257 LTGVRTGELRLAEPEQFDLDRGFWIIPPEVVKQLQDEMRKAGKRPQDVPPYIVPLSLQAI 316 Query: 276 ELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN 335 E++ L + +P +++ + R++ KK I EN + ++ +GYEG +GHG R ST +N Sbjct: 317 EIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTALN 376 Query: 336 EHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 E +P ++ QL+H++ V YNHA+Y++ RR MMQ WAD LD Sbjct: 377 EIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLD 422 >UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L9U1_9GAMM Length = 399 Score = 312 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 134/390 (34%), Positives = 212/390 (54%), Gaps = 11/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP EKPYRL DG GL+L + +G K+W+ Y++D K+++L +G ++L Sbjct: 3 LTDFKIRGAKPAEKPYRLSDGGGLFLEIRPNGSKLWRYAYRLDSKQRLLAIGSLQDVSLA 62 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR A+ + +G DPV KA+ S N+ + ++WY ++ WS + Sbjct: 63 DARAAMRQAKSQVKLGQDPVLQRKIAKARSEESALNTVAENAEDWYSGAEKSWSASHRDR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + D ILP IG I+++ P +L+++R+ E G A R+ VF +AIV Sbjct: 123 ARRYLDQRILPDIGKWPIREVTPADVLKLLRKAEKAG-PHVAIVTRQTLSSVFEHAIVNL 181 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +P + A+K + A + L T+ G+ V+ IA ++L T +RT Sbjct: 182 RADADPTHPVRRAIKKPPVMHAVAHSAATMGKLLAGLDTYPGNRVTAIAIELLALTFVRT 241 Query: 236 KELRSMLWKNVDFENR--IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 KELR+ W N+D+E ++ IDA MK R+ H VP++ + V LL L IT ++F Sbjct: 242 KELRTAKWANIDWEAESPLLKIDAGEMKKRRKHWVPLAPRAVALLRELQEITG-AGTYLF 300 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + D KKP+ AV + +K +G + + SGH FR ST ++E +P+ +++QLAHA Sbjct: 301 PNQRDPKKPMSREAVNMGLKYLGMDEI-SGHDFRATASTWLHEAGYPSAVVDMQLAHAKT 359 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 YNHA++L R +MM WAD L ++ Sbjct: 360 NKTGAAYNHAEFLPDRIKMMDRWADHLAKQ 389 >UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BVL9_9GAMM Length = 441 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 120/404 (29%), Positives = 211/404 (52%), Gaps = 25/404 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 L+ + AKP+EK Y L DG+GL L++ SG KVW+ +Y + +GK+ ++T+G +P ++L Sbjct: 8 LSDSKCTGAKPQEKDYSLYDGHGLILFIRKSGSKVWRFKYKRANGKDGLMTLGNFPALSL 67 Query: 61 QEARDKAWTARKDISVGIDPVK----AKKASSNNNSFSAIYKEWYEHKKQV--WSVGYAT 114 + ARDK ++ GIDP++ K N +F +I +EW+ K W A Sbjct: 68 KTARDKRRELETLLANGIDPIEYSEIQKAKLDNKYNFESIAREWHTAYKNTGRWGTETAE 127 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 K ++ + P +G I I+P +L++VI+ ED G E K R+R +F +A+ Sbjct: 128 RALKNMEEYVFPKLGKKPIDAIKPKELIQVIKSIEDLGYTEVVKKTRQRLTSIFAFAMSK 187 Query: 175 GRAKYNPAPDLADAMK-GYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G + NPA L D + K+ P LP +++P LA+ +G ++ + + +T Sbjct: 188 GFIESNPAYGLQDIFILSKKTKHHPQLPLERLPELQAKLASDTGHPITRLCVEFALHTFA 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTL 281 R+ E+R WK DFEN I TI + K + H++P+S+Q + ++ + Sbjct: 248 RSSEIRFARWKEFDFENAIWTIPPTRDFVEGYKYSHRGAKMKTPHLIPLSNQALAIIKEI 307 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE--GLESGHGFRHEFSTIMNEHE- 338 + ++ VF D + E+ + ++++GY+ GHGFR + + + Sbjct: 308 YKYSGH-TQNVFPKNGDPHGFMSESTINKTLRRLGYDTNTEVCGHGFRGMACAALIQSKL 366 Query: 339 WPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 + DA+E Q++H +VR Y H A++L++R+ M+ WW+ +LD Sbjct: 367 FQKDAVEKQMSHQERNNVRLAYTHKAEFLEERKTMLNWWSSYLD 410 >UniRef50_A7H0X5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0X5_CAMC5 Length = 396 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 114/394 (28%), Positives = 198/394 (50%), Gaps = 13/394 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLM 58 +L +I+A KPKEK Y++ DG+ LY+ V SG K + + + G+ K +++G+YP + Sbjct: 3 ILNDSKIKALKPKEKRYKISDGDNLYIQVMPSGTKTFIYEFKSRSSGRYKRISLGQYPAI 62 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 +L AR+K +K ++ G +P+ A SF A++ EW++ K++ S A + Sbjct: 63 SLLMAREKRLEFQKALANGDEPMSE--AKQAMTSFEAVFDEWFKFKQKEVSTKQAFTHKR 120 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 ++ LP G +I+ I Q+LE + E ++A ++FR+A++ + Sbjct: 121 YYERFFLPKFGKDDIKTITKRQILEAVESLNKEAKFETLDRALSSISQLFRWAVMNEYLE 180 Query: 179 YNPAPDLAD--AMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTALRT 235 ++P + K + ++ + D I + + G I + A +A R Sbjct: 181 HSPTYGIDKNALFKMPKVNHYAAIFDDDGIRKLVNNIKNYDGDIRVITAALFGLLSAQRP 240 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 +RS W ++FE +I I MK ++ H+VP+ Q ++LL++ + SEF+F Sbjct: 241 FNVRSAKWSEINFEKKIWEIPKEKMKMKEAHIVPLCSQAIKLLSSFKKY-EFRSEFLFPS 299 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMN----EHEWPADAIEVQLAH 350 K PI +N+V +++ +GY + HGFR FSTI + EH IE+ L H Sbjct: 300 VKSTKIPISDNSVRSMLRNLGYTNDDIVPHGFRAMFSTICHEHIKEHGLEERIIELCLDH 359 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 A V+ YNHA+ L +R ++MQWW D+L Sbjct: 360 AERNKVKAAYNHAKNLKERAQLMQWWGDYLARLA 393 >UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID=B2UB26_RALPJ Length = 415 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 106/395 (26%), Positives = 184/395 (46%), Gaps = 15/395 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKPKE+PY+L DG GL++ V G K W+ +Y + GK + + +G YP + + Sbjct: 8 LTPTRINNAKPKEQPYKLTDGGGLFVLVHPGGSKAWRYQYMLSGKRRSVLIGSYPEIGVS 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNS-----------FSAIYKEWYEHKKQVWSV 110 +ARD+ R + G DP + ++ F A +W + + + Sbjct: 68 DARDRHAEYRAMVEQGTDPAEHRRQDKAERKAKESLQEDEGLFKAFSLKWIDERLATKTE 127 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 GY +++ + + P+IG ++D++P LLE+I R A R +++ Y Sbjct: 128 GYRSQIKSRLERFVWPVIGRKALEDVKPSHLLEIIEA--RRATPNTAEGVRVIIQQIYNY 185 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 AI + NPA L + + ++ L ++ AF +AL + A ++L Y Sbjct: 186 AIQKLLVESNPAVPLRGVITVPKAEHHRHLSESELGAFWRALGRQGAHPATTAAARLLVY 245 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 + R E+ W D + I A MK R+ H V +S Q +ELL + +I+ Sbjct: 246 SMCRKSEVLRAKWAEFDLDKAQWDIPAERMKSRRPHRVYLSRQAIELLEIMRAISGD-GV 304 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHEWPADAIEVQLA 349 +V P+ E + + K++ + E S HG R +T++ EH + D +E+ LA Sbjct: 305 YVLPSVKIASVPLAEATLNHLFKRLDFGVPEFSPHGTRGTAATLLREHGFSRDVVELLLA 364 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H Y+H + +RR+ +Q+ AD +D + Sbjct: 365 HTERSQTAASYHHHELEAERRKALQYLADEIDRQA 399 >UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Sinorhizobium phage PBC5 RepID=Q8W6M6_9CAUD Length = 433 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 136/395 (34%), Positives = 209/395 (52%), Gaps = 22/395 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT KQI+ AK +K Y+L DG GL L+V +G K W+LRY+ DGKEK L +G YP ++L Sbjct: 4 LTDKQIKNAKKADKDYKLADGGGLNLFVLSTGTKSWRLRYRFDGKEKTLVIGNYPDVSLA 63 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + A++ + G DP KK ++F + +EW++ +K W +A++ Sbjct: 64 DARGEREAAKETLKSGRDPNVVKKIEKAIGKQQAADTFEVLAREWHKLQKPTWVEKHASD 123 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +D+ PIIG + I+DI+ +L V+R E R A E A + R+R +F Y I +G Sbjct: 124 VLDSLVNDVFPIIGQMPIRDIDAPTVLGVLRLVEQRDAKETARRIRQRISAIFVYGIASG 183 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA +PA + AM +K P + D+ A V+ + ++L TA+R Sbjct: 184 RASEDPAAVVRGAMAPMKKGRQPAITNLDKAREMLVATWKTPSHPVTKLGLRLLTLTAVR 243 Query: 235 TKELRSMLW---KNVDFENRIITIDASVMK--------GRKIHVVPMSDQVVELLTTLSS 283 L S W VD + + I A+ MK + H++P+S + +E +T L S Sbjct: 244 PGTLISTPWTELDEVDESDPVWVIPAARMKLLLQHKDDETRDHLIPLSKEAMETITVLRS 303 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD- 342 +T FV KP+ ENA+ ++ + GY HGFR FST+MNE +PAD Sbjct: 304 LTG-RGPFVLPNGRHAHKPMSENALGYLLNRSGYHHKHVPHGFRSTFSTVMNE-RYPADR 361 Query: 343 -AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWW 376 I++ LAH V G YN A++L++R+E+ Q W Sbjct: 362 QVIDLMLAHTPKDKVEGAYNRAEHLERRKELAQIW 396 >UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaproteobacteria RepID=Q167M4_ROSDO Length = 409 Score = 310 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 121/390 (31%), Positives = 197/390 (50%), Gaps = 10/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ +I K ++K Y++ D + LY+ V +G K+WQ++Y++DG+EK L++G YP ++LQ Sbjct: 17 LSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDGREKTLSIGAYPAVSLQ 76 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR AR I+ G DP + K+ +F I + + +++ + Sbjct: 77 QARKSRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKATLD 136 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 G I I +L +R+ E +G E A++ R R G VFRYA+ +G Sbjct: 137 KTAYHLKLANHDFGKKPITAITAPMILRTLRKVEAKGNYETAHRLRARIGSVFRYAVASG 196 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 A+ +P L DA+ +++ + A + + F G + + IA ++L A R Sbjct: 197 LAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQVTTRIALQLLALLAQR 256 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W D +++ I A MK R+ H VP++DQ + LL L +T SE++F Sbjct: 257 PGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGE-SEYLFP 315 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 +P+ EN + ++++GY G E + HGFR FST+ NE W DAIE LAH Sbjct: 316 SLRSWHRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIERALAHEE 375 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 VR Y + ++R ++ WWA LD+ Sbjct: 376 RNEVRRAYARGAHWEERVKLSDWWAGRLDD 405 >UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW0_9NEIS Length = 394 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 118/392 (30%), Positives = 201/392 (51%), Gaps = 12/392 (3%) Query: 2 LTVKQIEAAKPKEKPYR-LLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT Q + P +K + L DG GLYL + G++ W+++Y + K+ +G YP M L Sbjct: 3 LTDNQCKHTPPPDKGVKQLSDGGGLYLQIDAKGRRYWRIKYTYNQKQHTQHLGIYPAMPL 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHK--KQVWSVGY 112 + AR + + +S GI+P ++ N+F + ++W+ K K W + Sbjct: 63 KAARMERDKIKLLLSQGINPKTHQEQQQRAEQKRITNTFEHVARKWHTTKAEKGDWKPAH 122 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 AT + + + ++P +G L I DIEP+ +L I+ E G + ANK +F +A Sbjct: 123 ATRVLRQIELYLIPPLGSLSIADIEPLDILHAIQNVEHTGKIATANKVYDIAHAIFSFAA 182 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYT 231 YN A +L ++ + + + ++ A +A+ ++GS + ++ Sbjct: 183 RMKLCPYNAAAELKPELQQAKATPYRHVTDTGELTALLQAIDGYTGSPQVKVLLQLAPLV 242 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 R ELR + W ++DF+ A MK H+VP+S Q + LL++L +T E+ Sbjct: 243 FARPSELRLLKWADIDFQAACYHKAAHEMKNGIAHIVPLSRQALALLSSLKPVTGHY-EY 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF + K P+ E A + +IG+ + HGFRH ST+++E ++ +D IE QLAH Sbjct: 302 VFHNKAAGK-PLSEAAARKALSRIGWLDKVTLHGFRHTASTLLHEQQYSSDWIERQLAHK 360 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 + + R YN A++L++RR+MMQ WAD+LD Sbjct: 361 DPNTTRASYNFAKHLEQRRQMMQEWADFLDSL 392 >UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_HAES1 Length = 418 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 101/398 (25%), Positives = 197/398 (49%), Gaps = 17/398 (4%) Query: 1 MLTVKQIEAAKPKEKPY------RLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTV 52 +L ++I+AAKPK +L DGNGLYL V +G K+W+ Y + K +++ Sbjct: 7 LLNNRKIDAAKPKADEQGNLTDNKLQDGNGLYLLVKATGSKLWRFNYYKPLTKKRTEMSL 66 Query: 53 GKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHK-- 104 G YP ++L +AR+ R ++ IDP + ++ NN++ A+ W+E++ Sbjct: 67 GAYPDVSLAQARELRNQYRSLLAQDIDPNEHRQNVKQAKLDEINNTYEAVAWAWFEYRQT 126 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 K+ +S GY ++A + +LP G L I I L+ ++++D G +E+ + ++ Sbjct: 127 KKNFSEGYKKDVASLIKRCLLPHFGSLPISQITAPMALKAFKQYQDEGTLEKLKRTIQKH 186 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 E+ +A+ +NP +++ ++F + + +P F L ++ + Sbjct: 187 NEIMNFALHRDLISFNPTANISKEFDSPTVEHFKTIQPEDLPEFMYTLNNAQINLRTRYL 246 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 T R E ++++D ++R+ TI A MK H + +S Q + LL + + Sbjct: 247 ILWQLLTMTRPNEAAKARYEDIDEKSRLWTIPAENMKRGIAHKITLSRQAMALLREIKKL 306 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI 344 + + ++F + + IK++GY+G HG R ST +NE + ++ I Sbjct: 307 SGGKT-YLFPNVKYPQTHVNTQTANAAIKRMGYQGKLVAHGLRSIASTYLNEKGYNSELI 365 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 EV L+H N ++ Y+ + L++R +++Q WAD+++E Sbjct: 366 EVALSHINSDRIKAAYDRGERLEQRFKLLQVWADFVEE 403 >UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=cellular organisms RepID=Q3JXH9_BURP1 Length = 414 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 113/390 (28%), Positives = 189/390 (48%), Gaps = 8/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG-KEKILTVGKYPLMTL 60 L +I+A KPK Y + DG GL L V SG K W+ RY + G ++ ++T+G+YP ++L Sbjct: 13 LNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIGEYPAVSL 72 Query: 61 QEARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 AR++A + ++ G+ PV K + A + ++ + W E + S Y Sbjct: 73 TAARERARRYAEIVAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTT 132 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + DI P IGG + D+ P +L + R + RGA + A R ++ YAI Sbjct: 133 RRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQL 192 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NPA + + L ++I +A+ S +A +L T +R Sbjct: 193 VTSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVLTMVRKS 252 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 EL W D + I I A MK + H V ++ Q V +L L + T+ ++VF Sbjct: 253 ELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHA-TRTSHQYVFPSS 311 Query: 297 NDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 +PI ++ + ++ + + H FR ST ++E P+DAIE LAH+ G Sbjct: 312 RGADRPIAKSTLNQAVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKG- 370 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 ++G+YN A+Y D+RR + WAD++D +++ Sbjct: 371 IKGVYNRAEYADERRRITALWADFVDAQID 400 >UniRef50_B9D1P3 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter rectus RM3267 RepID=B9D1P3_WOLRE Length = 395 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 113/390 (28%), Positives = 188/390 (48%), Gaps = 10/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEK--ILTVGKYPLMT 59 LT ++I KPK+K Y+ DG GLY++V SG+K + L YK K L +G +P + Sbjct: 8 LTDREIRGLKPKDKIYKKCDGRGLYIFVDPSGRKYFALEYKSPADNKIKRLNLGDFPEFS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L AR++ + + + GID VK + + +F + + W E K ++ Sbjct: 68 LAMAREERFKLEQKVRDGID-VKHESEINEQANFKKLAQRWLEIKAASVEPNTLNRDKRL 126 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + P I DI ++E++++ E +G++E + ++++ A Sbjct: 127 LEMYAYPFFENRSITDITVTDVIEILKKIEAKGSLEMMKRLYSLLNQIWQSAYYIAPNNV 186 Query: 180 NPAPDLADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 + + K ++KN+ L + I A +++ +SG I + A K TALR + Sbjct: 187 IASINYRFTFKKVKEKNYATLTKNADIKALWQSIDEYSGDIRTKYALKFAVLTALRPFNI 246 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 RS W+ +DF+ +I+I A MK R+ +P+S Q +ELL ++F Sbjct: 247 RSAKWEYIDFDEGVISIPAGDMKMREAFTLPLSRQALELLKEYKGYNLDQ-IYLFGSLYG 305 Query: 299 KKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNE----HEWPADAIEVQLAHANG 353 + + EN + + ++++G+ + HGFR FST+ NE H D IE LAH Sbjct: 306 SARYMSENTLNVALRRMGFSKDEIVSHGFRAMFSTVCNENIDAHGLNFDIIEKCLAHKGT 365 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +R YN AQ L + R MMQWWAD+LD Sbjct: 366 DKIRAAYNRAQNLAQMRAMMQWWADYLDAL 395 >UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root RepID=A5EUW8_DICNV Length = 399 Score = 308 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 114/389 (29%), Positives = 189/389 (48%), Gaps = 8/389 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ ++ KP EK Y++ D +GL+ V +G +W++RY + GK + L +GKYP ++L Sbjct: 1 MLSDAKLRKLKPTEKKYKIADSHGLFAVVMPNGSILWRMRYVLAGKRRELALGKYPAVSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNN---SFSAIYKEWYEHKKQVWSVGYATELA 117 EAR R+ I G+DP + + + K + S Y Sbjct: 61 SEARQIVLLYREQIERGVDPHAQHVERHKKQDGVTVAEAVELLLSEKAKYCSASYLESCR 120 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY-AIVTGR 176 + +L G + ++ + +I ++ G A + + GE+++ + TG Sbjct: 121 SRLSNHVLSRFGARALAEVSEDEWRALINWLDNGGKNYTAIRVQDLAGELYKTVRLKTGL 180 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NP ++ +K +N+P + + A+ F+G +A K L R Sbjct: 181 KIANPILEIRGTVKKKPAQNYPRITNPARFGELLHAIDYFNGRWQVYLALKFLPLVFCRQ 240 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR M+W+ VDFE + I A +K R+ H+VP+S Q + +L + S+ VF G Sbjct: 241 IELRRMVWQEVDFERALWCIPAEKIKMRRAHLVPLSTQAIAILRQAEQLR--CSDLVFCG 298 Query: 296 RNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + ++PI N + ++ +G+ GHGFR +T++NE W + ++ QLAH Sbjct: 299 VRNPRQPISVNTIGSALRTLGFGHDEMVGHGFRGTAATLLNELGWDSHIVDFQLAHWQRS 358 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEK 383 SV YNHA+YL +RREMMQ WAD+ DE Sbjct: 359 SVSSAYNHAEYLTQRREMMQAWADYCDEL 387 >UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales RepID=A9I0E1_BORPD Length = 536 Score = 307 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 117/408 (28%), Positives = 204/408 (50%), Gaps = 26/408 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +L+ QI+AAKP +K Y L DG+ LYL V ++G K W RY D K L +G YP +TL Sbjct: 102 LLSETQIKAAKPGQKEYMLNDGDNLYLRVRITG-KAWIYRYMKDSKPIKLGMGPYPEVTL 160 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYE--HKKQVWSVGY 112 +AR KA+ A + G+DP + ++ + ++F + + W+ K + WS GY Sbjct: 161 AQARTKAYEANSQRANGLDPKEVREQLAEQTRIARLHTFELLARAWHASAKKDREWSEGY 220 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A ++ + + I P +G I+ I P +++ + R +DRG +E A + R V++YA+ Sbjct: 221 AQKVIRHLEIHIFPWVGHKPIEMILPTEIVRCLHRPKDRGNLETAQRVREAVQHVYQYAV 280 Query: 173 VTGRAK--YNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLR 229 G + N + R ++F + Q+ + + ++ G ++ A ++ Sbjct: 281 DVGALEPSKNFVNKNTGGLPPPRSRHFAAITEPAQLGQLLRDIRSYHGQFITRCALRLAP 340 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRK---------IHVVPMSDQVVELLTT 280 R ++R W+++ E + MK R+ H+VP+ Q +E+L Sbjct: 341 MMFQRPGQIRLADWEDISLEVELWRCPPEKMKMREWQKRDSRTPAHIVPLPRQALEILRE 400 Query: 281 LSSITKPVSEFVFAG--RNDKKKPICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNE 336 L +T P + R++K + I +N + ++ +GY+ E +GHGFR T++ E Sbjct: 401 LHPLTGPTGPVFRSMSRRSEKSRYISDNTINAALRTMGYDTKEEITGHGFRATARTMIRE 460 Query: 337 H-EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 H W D IE LAH + + Y+ A ++ +R+ M+Q WAD+LDE Sbjct: 461 HLGWEPDVIERHLAHTSDEELGSSYDRAAFIAQRKAMVQQWADFLDEL 508 >UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46Z79_RALEJ Length = 418 Score = 306 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 137/401 (34%), Positives = 205/401 (51%), Gaps = 19/401 (4%) Query: 2 LTVKQIEAAK-PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGK--EKILTVGKYPLM 58 L Q AK RL DG GLYL + SG K W+++Y+ G E +LT G YP + Sbjct: 8 LADLQCRQAKYSTAGGNRLRDGGGLYLELLPSGAKKWRMKYQRPGSKSENLLTFGDYPAV 67 Query: 59 TLQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 L AR++ AR ++VG DP KA A + N+F A+ +EW +H+ WS Y Sbjct: 68 GLSAARERREEARAQLAVGTDPALARDLAKATVAEAARNTFRAVAEEWLKHRHDTWSASY 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + ++ + D+ P +G I I P LL V R+ E RGA E +A G++F+YAI Sbjct: 128 AQKTKQLLERDLYPDLGQHPIASITPAFLLTVARKIEARGAYEMPRRALVTAGQIFQYAI 187 Query: 173 VTGRAKYNPAPDLADAMKG-YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TGRA + + + +K K++P + Q+P + + ++G ++ A K+ T Sbjct: 188 GTGRASIDASAGMVAQLKPRPPVKHYPHVADTQLPDLLQRIDRYTGRPETIAAVKLAVLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGR-------KIHVVPMSDQVVELLTTLSSI 284 +R ELR W +D E + + MKGR HVVP+S Q + LL L Sbjct: 248 FIRGGELRYAEWSELDLEKAEWHVPSGRMKGRLWHKLSGTPHVVPLSRQTIALLEDLKQY 307 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADA 343 T + +F G KP+ A+ V IG++G ++ HG R ST++NE + Sbjct: 308 TGHYA-LLFPGAVSVLKPVTGEAMNKVFHSIGFKGQQTVHGLRGLASTLLNESGLFDPRV 366 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 IE QL+H YNHA+YL +RR +MQWWAD++D++ Sbjct: 367 IEAQLSHKETNKTIAAYNHAKYLPERRRVMQWWADYIDQRA 407 >UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0FEDC Length = 418 Score = 306 bits (784), Expect = 9e-82, Method: Composition-based stats. Identities = 118/397 (29%), Positives = 196/397 (49%), Gaps = 18/397 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+ AKPK K Y++ D GL+L + SG K W+ ++I+ T+GKYP ++L+ Sbjct: 3 LTDTAIKNAKPKTKAYKMSDSGGLFLLIKPSGYKSWKYDFRINSTRGSYTIGKYPDISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHK---KQVWSVGYATELAK 118 +AR + AR+ ++ GI+P + K N+ +Y ++ KQV + +L + Sbjct: 63 QARQEHLQARELVAQGINPKQIKTQRKVNDELQTKRFSYYMNQWLNKQVLAESTFKDLKQ 122 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D +++P + I + LL+++ DRGA E A + VF ++ G + Sbjct: 123 RIDKNLIPFLDKKNINEYTTADLLKIMLSISDRGAKETAIRLANVARRVFNEVLILGIIE 182 Query: 179 YNPAPDLADAMKGYRKKNF----PFLPADQIPAFNKALATFSG--SIVSLIATKVLRYTA 232 NPA LA+ + K+ +++ + S A K++ Sbjct: 183 TNPAQGLAELLPKPDKRIDNNFGHITSTEELKILLNQIDAPSARQDFAVTQALKLMPLVF 242 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 LR +R + W+ ++F+ II + A+ +K K VP++ Q V +L + +T + +V Sbjct: 243 LRPYNIRFLKWEYINFDENIIKLPATELKNNKPLDVPLATQAVTILKQMQQVTGHKT-YV 301 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYE--------GLESGHGFRHEFSTIMNEHEWPADAI 344 F K P+ EN +K+I G + HGFRH ST++NE + AD I Sbjct: 302 FVTAQGKDTPLSENTTTNALKRIINPTTNKPYGTGYMTSHGFRHTASTMLNELGYEADII 361 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 E+QLAH N +R YN A++++KR MMQ WAD+LD Sbjct: 362 ELQLAHTNKDRIRATYNKAKWMNKRIAMMQDWADYLD 398 >UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157:H7 RepID=B3A9A3_ECO57 Length = 412 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 119/391 (30%), Positives = 187/391 (47%), Gaps = 14/391 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LTV +++ KP+EK Y + DG GL L V +G KVW+ RY I K + T+G++P + Sbjct: 6 LTVTEVKGMKPREKDYAVYDGFGLLLNVSKAGGKVWRFRYSHPITKKRQTYTIGRFPEFS 65 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKK-QVWSVGY 112 L EAR+ R+ I+ G+DPV KK +F A+ W+ KK Sbjct: 66 LAEAREVRDELRRMIARGVDPVTEKKNRKIEMSLKNLQTFEAVANAWFAFKKGSELRKPT 125 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + ++P G I+ I + + D+ A++ K R E+ YA+ Sbjct: 126 LYNIEYEVYKYLVPFFGKYSIEKITAPVAINALDAVSDKNALQ--KKLISRLNEIMNYAV 183 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI-VSLIATKVLRYT 231 G K NP + A G + K+ LP +++P F + + ++ A T Sbjct: 184 NCGALKANPLLKIKTAFTGKKNKSLAALPVERLPEFLSWWDSVPHTYQIAHNALLFQILT 243 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R E W +DF++ + I A MK + HVVP+S Q + +L T+ I + Sbjct: 244 MVRPGEAIKAEWSEIDFDSGLWIIPAHKMKCHREHVVPLSSQAISILRTMQEI--KRGRY 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF K P+ N + I ++G+ + HGFR +ST++NE + D IE LAH Sbjct: 302 VFFSSRTKDAPMGRNTIKTPIAASKFKGIVTLHGFRSMWSTLLNEEGFNPDVIEAALAHK 361 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 +G +R IYN YL++R+ MMQW D+ D+ Sbjct: 362 SGDKIRDIYNRTIYLEQRKIMMQWVGDFFDD 392 >UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y106_LEPCP Length = 429 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 120/405 (29%), Positives = 190/405 (46%), Gaps = 27/405 (6%) Query: 6 QIEAAKPKEKP-YRLLDGNGLYLY-VPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEA 63 +++A +KP R+ DG GLYL + G W+L Y +GK K L++G YP L A Sbjct: 15 ELKAIVDGKKPARRIGDGGGLYLLPLVKGGAHGWRLDYTFNGKRKTLSLGTYPDTGLSLA 74 Query: 64 RDKAWTARKDISVGIDPVKAKKASSNNN----------------------SFSAIYKEWY 101 R KA AR ++ G DP + +K S A+ +W Sbjct: 75 RKKAAEARTLVAEGTDPSEHRKGVKEERERQHLAGQEAAQRAAAGLAEPGSLEAVAADWL 134 Query: 102 EHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKAR 161 +H+ W+ G +A + P +G + +I P ++ ++R E GA E A + Sbjct: 135 QHRAGAWTEGTRHNIAGSLKRYVFPTLGRRPVGEIAPGEIRTCVQRIEASGAAETAGRVF 194 Query: 162 RRCGEVFRYAIVTGRAKYNPAPDLA--DAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 +R ++RYA+ +P L + + K+ P + A + PAF + LA + G Sbjct: 195 QRLRALYRYAVAHELVAADPTYPLKPSEIFRPRDTKHRPAMSAQEAPAFLRKLADYGGDP 254 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 A +L TA+R ELR+ W +D + I A+ MK + H+VP+S Q + +L Sbjct: 255 TVRNALLLLVLTAVRPGELRAAEWTEIDEAAALWRIPAAHMKMKAEHLVPLSVQALAVLE 314 Query: 280 TLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEW 339 + ++T + +F +P EN + + ++GY+G + HG R FST NE Sbjct: 315 EMRALTGTQA-LIFPSPFYPGRPFSENTMNSALARMGYKGEATAHGMRTLFSTSANEAGH 373 Query: 340 PADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 D IE QLAH VRG YN A+Y+ +RR +M WW + +D Sbjct: 374 RGDVIERQLAHEERDDVRGAYNRAEYMAERRRLMTWWGERVDSMR 418 >UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SUB2_ACILW Length = 396 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 10/381 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + A+PK+K YRL D +GL L + G+K W +R + G+ K ++G YP ++L+ Sbjct: 19 LTDTECRKAQPKDKQYRLSDLHGLSLIITTKGQKYWNVRVTVHGERKSESLGPYPDLSLK 78 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 +AR+ A+ + S + K F + ++W+ ++K+ WS + + + D Sbjct: 79 KARELAYELKHRYSRSVLHEDLK------PYFEEVAEDWFNNQKETWSSKHISNVRASLD 132 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 ++ + I I+ ++L++I++ E RG++E A + RCG V +YAI G NP Sbjct: 133 -ELYIALANKRINQIQAPEILQIIKKIEARGSLEIAKRTLSRCGMVMKYAIAHGYRYDNP 191 Query: 182 APDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSM 241 A DL A+K R KN L A ++P F + + + + A ++ T +R EL Sbjct: 192 AGDLVYALKNKRVKNLASLSASEMPEFLRRIKAYPADAQTHHAIVLIMLTGVRVSELLQA 251 Query: 242 LWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKK 301 W+ D E R I MK R H VP++D ++ L L E +F R + K+ Sbjct: 252 RWEEFDLEGRKWDIPEERMKNRLSHRVPLTDMMIAELQALR--LTHNQELLFPHRLNNKE 309 Query: 302 PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIY 360 P+ ++L VIK+ GY G + HGFR FST++NE + DAIE QLAH +R Y Sbjct: 310 PMRSESILAVIKRSGYAGRMTTHGFRSLFSTVVNESNLFNPDAIERQLAHVPQNRIRSAY 369 Query: 361 NHAQYLDKRREMMQWWADWLD 381 N AQY D+R +MQW+ + ++ Sbjct: 370 NRAQYWDERVRLMQWYGEQVE 390 >UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WP11_VEREI Length = 387 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 192/382 (50%), Gaps = 14/382 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LTV+ +EAAKP+ K Y+L D GLYL+V +G K W+ Y +GK+ T G++P ++L Sbjct: 3 LTVRAVEAAKPRHKGYKLADSVGLYLFVTPAGGKSWRANYLREGKQATRTYGRWPDVSLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSV-GYATELAKMF 120 EAR AR + A+ SF I + W + K S + +++A Sbjct: 63 EARKAHAAARDGVV---------PATVAVPSFETIARAWLKLKLPTLSNGKHQSQVANTL 113 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + + P IG I I +L++V++ + G +E A++ R VF YA G + + Sbjct: 114 ERFVFPKIGKRPIDTIHRPELVDVVQAVQLDGRVETAHRVAGRIAAVFDYAQDAGLIESH 173 Query: 181 PAPDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 PA L + + KK + + A +A+ + V+ + ++L +T +R ELR Sbjct: 174 PASHLVRVLHSRKVKKPMASIAPAEAGALMRAITDYD-EPVTGLGLQLLAHTFVRVGELR 232 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 +M W + + I A MK R HVVP+S Q ++ L + EFV Sbjct: 233 AMRWSEFKEDGAVWVIPAERMKLRLPHVVPLSLQAQAIVGQLRLLNAER-EFVMDSPLRP 291 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVRG 358 P+ EN L + ++GY G + HGFR ST++NE + D IE QLAH +VR Sbjct: 292 GHPLSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHKETDAVRA 351 Query: 359 IYNHAQYLDKRREMMQWWADWL 380 YN AQYL +RRE+MQWWA WL Sbjct: 352 AYNRAQYLPQRRELMQWWAQWL 373 >UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enterobacteriaceae RepID=INTB_ECOLI Length = 396 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 200/381 (52%), Gaps = 22/381 (5%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAK 84 ++L V +G K W+L+Y+ +GK+K+L +G YP +TL +AR + ARK ++ G+DP K Sbjct: 1 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 60 Query: 85 K----ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQ 140 K S +F + EW+ K+ WS +A + K +D++ +G I +++ Sbjct: 61 KNDKVEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVLKSLEDNLFAALGERNIAELKTRD 119 Query: 141 LLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFL 200 LL I+ E G +E A + ++R + RYA+ +G YNPA ++A A+ +++ P L Sbjct: 120 LLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPAL 179 Query: 201 PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASV- 259 +IP + +++G ++ A ++ +R+ ELR W +DFE I TI Sbjct: 180 ELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPERE 239 Query: 260 -----------MKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAV 308 K R H+VP+S Q + +L + + +F G +D KP+ EN V Sbjct: 240 PIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYG-AHDLIFIGDHDSHKPMSENTV 298 Query: 309 LLVIKQIGYEGL--ESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNH-AQ 364 ++ +GY+ GHGFR + + E W DA+E Q++H SVR Y H A+ Sbjct: 299 NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE 358 Query: 365 YLDKRREMMQWWADWLDEKVE 385 +L++RR M+QWWAD+LD E Sbjct: 359 HLEERRLMLQWWADFLDVNRE 379 >UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonadaceae RepID=A1W8P6_ACISJ Length = 413 Score = 305 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 131/402 (32%), Positives = 202/402 (50%), Gaps = 19/402 (4%) Query: 1 MLTVKQIEAA--KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT KQ + A P +K R D GLYL V SG K W + DGKE + +G YP Sbjct: 1 MLTDKQCKNAICPPDKKRARFTDSLGLYLEVSPSGSKRWFWKTYFDGKEGRMALGSYPTQ 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGY 112 +L +AR A+ + G+DPV+ +K ++F AI EW+ + WS + Sbjct: 61 SLADARKARDIAKLKKADGVDPVQERKLEKLKGSRSGGDTFQAIALEWHGRQVDQWSDTH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + D+ P IG ++ IEPM+LL +++ E+RGAME A++A C +++RY + Sbjct: 121 AGRTKRQLERDLFPWIGDRQMTSIEPMELLATLQKIEERGAMETADRALMLCRQIWRYWL 180 Query: 173 VT-GRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRY 230 T G + + L + + YR NFP + + +A+ + GS A + Sbjct: 181 PTAGNTQRDITVGLKNRLTPYRGTNFPAIVEPKRFGELLRAMHVYKGSHTVRTALLLAPL 240 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKG-------RKIHVVPMSDQVVELLTTLSS 283 R LR+M W VD + + TI + MK + H VP+ Q VELL L + Sbjct: 241 LYQRPGNLRAMEWAEVDLDAALWTIPSMKMKRTKTEKEQGEPHAVPLPTQAVELLRNLQA 300 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM-NEHEWPAD 342 +T +VF G+ D ++P+ +N+V + +G+ +S HGFR T++ ++ + Sbjct: 301 LTG-RGTYVFPGQRDHERPMSDNSVRSALYSLGFGTEQSWHGFRASARTMLVDQLDLDPL 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 AIE LAHA S YN QYL KR + +Q WA++LD Sbjct: 360 AIEANLAHAVKDSNGRSYNRTQYLKKRYDQVQMWANYLDRLR 401 >UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria RepID=B2I529_XYLF2 Length = 410 Score = 305 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 109/390 (27%), Positives = 191/390 (48%), Gaps = 8/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++A KP+++ Y + D GL + V +G VW+ RY++ G+ + LT+GKYP ++L+ Sbjct: 3 LTDTALKALKPRDRIYSVADERGLSVEVYPTGGIVWRFRYRLAGRYEKLTLGKYPALSLR 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEH---KKQVWSVGYATELAK 118 AR K A +++G P + K+ + + + +++ E + Q +T + Sbjct: 63 NARLKRDEAASLVAMGTSPARQKQLAKVTAADAMTVRDFAERFFREIQSRDRKDSTMPRR 122 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D DILP +G ++++ ++ +I R +++G A + R + YA+ G Sbjct: 123 YLDKDILPFVGDKPMREVTAEEIRSLIWRKKEQGFDATAGQIRGVLKRLCDYAVTCGLMP 182 Query: 179 YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 NP L L D+I F +A+ +A ++ T +R EL Sbjct: 183 TNPVLALPMRHVYKAVSRDRALSPDEIRLFLRAVWASRIRRQFKLALHLILLTMVRKSEL 242 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 W +V + I A K K H+V +S Q V L L + S V G Sbjct: 243 LLARWDHVHLDQAQWHIPAEHSKTGKPHIVYLSRQAVVLFEALRVLAGG-SALVMPGSGT 301 Query: 299 KKKPICENAVLLVI-KQIGYEGLE--SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 +P NA+ + K + ++G+ + H R ST ++EH W +D +E L H+ GG Sbjct: 302 LTRPFAHNALNHALGKAMQWQGIHAFTIHDLRRTASTWLHEHGWASDVVEKALNHSIGG- 360 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 VRG+YN A+Y D+RR+M+Q WAD+++++++ Sbjct: 361 VRGVYNRAEYADQRRQMLQCWADFIEKQLK 390 >UniRef50_B9NUX0 Site-specific recombinase, phage integrase family n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NUX0_9RHOB Length = 404 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 122/391 (31%), Positives = 193/391 (49%), Gaps = 10/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ +P + Y+ D +GLY+ V +G K W L Y+ GK+K+++ G YPL++L+ Sbjct: 3 LTDIALKNMQPSGRAYKRSDAHGLYILVKPNGSKHWHLHYRFLGKQKVMSYGPYPLISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR+K RK + GIDP+ KK F + E E + + Sbjct: 63 EAREKRDRDRKFLIEGIDPMVVKKERKLASERAQRGRFDILAAELLEKNRVEGRAEQTLK 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + L + +I P +L V+++ E G +E A++ R GEVFRYAI G Sbjct: 123 KKAWLVEMANKDLAKLAVMEITPSDVLAVLKKQEKAGNLETASRLRTTIGEVFRYAIACG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + +P L A+ R ++ + +++ ++ +SG V + ++L +R Sbjct: 183 LTENDPTIPLKGALVQKRPRSRSAITNPERLGELLCSIENYSGYRVVALGLRLLALLHVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W+ D E TI A MK R+ HV P+ Q +++L L I+ P V Sbjct: 243 PGELRFAKWEEFDLEAGKWTIPAERMKMRQPHVAPLPTQAIDILRELQRISHPDG-MVLP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 + + P+ EN ++ +GY + + HGFR FST+ NE W DAIE LAH + Sbjct: 302 SQRRRIDPLSENTFNKALRMMGYSKEEMTAHGFRATFSTLANESGEWNPDAIERALAHVD 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 VR YN A + ++R EM QWWAD L++ Sbjct: 362 SNEVRRAYNRAAFWEERVEMAQWWADGLEKL 392 >UniRef50_Q0C1T8 Site-specific recombinase, phage integrase family n=2 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1T8_HYPNA Length = 409 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 121/385 (31%), Positives = 193/385 (50%), Gaps = 10/385 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I + KP KP R DG L++ V +G K+W+ YK DGK+K++ +G YP ++L Sbjct: 17 LTDLKIRSLKPDGKPRRYTDGGNLFIEVRPNGSKLWRFAYKFDGKQKLMALGTYPEISLA 76 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR+K AR + GIDP++ K + ++FSAI E + ++ G Sbjct: 77 RAREKRAEARALLIEGIDPMQQAKVNKLERQALTEHTFSAIAAELLDKNRREGLAGATLS 136 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 +G L + I+P +L +R+ E G E A + R +VFRYA+ T Sbjct: 137 KKSWLVGIANADLGDLPVTQIKPTHVLVPLRKVESEGNYETARRLRAVISQVFRYAVATA 196 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFN-KALATFSGSIVSLIATKVLRYTALR 234 RA+++P L A+ + + P + + A +++ + G+I + +++ R Sbjct: 197 RAEHDPTAGLRGALIAPKVTHRPAIVDREKFAGLIRSIWAYDGAIETKAGLQLMALLYPR 256 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W D R TI A+ K R+ H P+S VE+L L ++T +V Sbjct: 257 PGELRLSTWGEFDLRKRTWTIPAARTKMRREHKKPLSGAAVEILKRLHAVTGHE-PYVLV 315 Query: 295 GRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 + + KPI EN + ++++GY + + HGFR S+++NE W DAIE +LAH Sbjct: 316 SQLSRGKPISENTLNGSLRRLGYAKEEMTSHGFRASASSLLNESGKWHPDAIEAELAHMG 375 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWA 377 +R Y+ A Y D+R EM WWA Sbjct: 376 ADQIRKAYHRATYWDQRVEMADWWA 400 >UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UDD1_9RHOB Length = 406 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 124/390 (31%), Positives = 197/390 (50%), Gaps = 9/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I A KP + YR+ D NGL + V G + W+ RY+ +GK +++ +G+YP ++L+ Sbjct: 3 LTDAKIRALKPADTLYRVSDSNGLSIEVTPKGDRYWRFRYRFNGKAQMMGLGRYPSVSLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K R+ + G++P ++ A +SF +I E+ ++ + + Sbjct: 63 KARSKRDHYRELLDEGLNPSLERQTRQQELAQLEQSSFGSIATEFLRKRETEGAAPATLK 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +LP + L IQ+I QLL+V+R E RG A +AR G +FRYAI TG Sbjct: 123 KLRALLRLLLPDLAPLPIQEITAPQLLQVLRATESRGKHVVATEARALAGRIFRYAIATG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTALR 234 R + +P+ L +A+ R K + + + A + T+ G + +L +T +R Sbjct: 183 RCEQDPSYMLREALVTPRVKGYAAIREPEAFGALLARIETYEGDTLIKNGLLLLAHTFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 +LR W++ D E + A K + H+ P+S QVV L+ + K V Sbjct: 243 PGQLRLAQWEDFDLEAALWRAPADRTKMSRFHITPLSSQVVCLIKEMHR-NKADDTLVMG 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEG-LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 R PI + ++ +G G + HGFR ST++NE E+ D IE QL H + Sbjct: 302 SRVKPGHPISDMTFNKALRSLGVMGDVHVAHGFRKSASTMLNEQEYNYDWIERQLDHVSQ 361 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +RGIYN AQYL R MMQ W+D+LD Sbjct: 362 NRIRGIYNAAQYLQGRTRMMQEWSDYLDRL 391 >UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepID=Q1Q875_PSYCK Length = 452 Score = 302 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 121/396 (30%), Positives = 195/396 (49%), Gaps = 17/396 (4%) Query: 1 MLTVKQIEAAKPKEK-----PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKY 55 ML+ +I KP +K P + D GL L V SG + W Y+ DGK++ T+G Y Sbjct: 1 MLSDAKIRKLKPTDKCTPSRPDKYSDQQGLQLLVRSSGTRTWVSAYRFDGKQQKTTLGTY 60 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKK----ASSNNNSFSAIYKEWYEHKKQVWSVG 111 P M L EAR + ++ GI+P K+ A+ +F+ EW E +++ Sbjct: 61 PQMGLAEARVANADIKALVANGINPKNKKRQDKLANEQAKTFNDYAVEWLEERERNVKPR 120 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERA------NKARRRCG 165 + D++P G+ ++D+ + E R E A + G Sbjct: 121 TYQQDYNRMHKDVIPSFEGIALKDVTFEDCKLMADNIESRTNNEGASPREVTRRTIDLVG 180 Query: 166 EVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIAT 225 + R A+ + N L + + K+ + ++P + + + G + + Sbjct: 181 NILRRAMRERLIEVNHTDGLKELYPKAKTKHMKHVELSELPKLLQDIEGYHGHDQTRLGM 240 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 K L Y+ RT ELR M W+++DF NR+ +D +K + HVVP+SDQ++ +L + IT Sbjct: 241 KFLAYSFCRTIELRMMKWEHIDFPNRLWRVDIDNLKIARKHVVPLSDQMLAVLEEMKHIT 300 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 E+VF +P E + + +GY G ++GHGFRH ST +NE + DAIE Sbjct: 301 GQY-EYVF-YHTGMHQPYSEEFINNALDILGYGGKQTGHGFRHIASTNLNELGYMGDAIE 358 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 Q+AH S+R +YNHAQ+L++RR++MQ WAD+LD Sbjct: 359 KQMAHDKKSSIRAVYNHAQHLEERRKIMQVWADFLD 394 >UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JSX8_PASHA Length = 413 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 105/399 (26%), Positives = 175/399 (43%), Gaps = 21/399 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPV--SGKKVWQLRYKIDGKEKI--LTVGKYPL 57 L QIE AK K+K Y L DG+GL L V G K+W Y + LT+G+YPL Sbjct: 8 LNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKIWIFNYTNPQTKNRTNLTIGRYPL 67 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYE--HKKQVWS 109 +TL EAR R I GIDP + KK + N++F + + ++ +K++ + Sbjct: 68 ITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAENRVNDTFRNVAESYFNGIYKEKAKN 127 Query: 110 VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 + ++ I P IG +++I+ L+++ + D+ K + V Sbjct: 128 PITREKNWIRLENHIFPYIGDKHVEEIKVKALVDIYSKVADKS--NTLKKLHQLVSAVMD 185 Query: 170 YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 +AI G + + P + +++P L S + Sbjct: 186 HAITQGIIESHNCRLAVKNFYIKPSTPNPTIELEELPQLFTDLHNAKLSKQTYALVCWSF 245 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKG----RKIHVVPMSDQVVELLTTLSSIT 285 TALR E + WK +DFE ++ I MKG ++ H VP+S Q +++L + + Sbjct: 246 LTALRPNEAVNAEWKEIDFEKKLWNIPKEKMKGKADKKRPHSVPLSSQALKILEMMK-MH 304 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 S FVF GR+ KP+ V +K+ GY+ + HG R T ++ + E Sbjct: 305 SNSSPFVFPGRSSNSKPMSNATVNSTLKRNGYKDRLTAHGIRAFVKTFLSSRKVDRHVSE 364 Query: 346 VQLAHAN--GGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 L+H G + YN +L++R +MQ D+ ++ Sbjct: 365 SILSHLLEGGDDLENTYNRYDFLEERVPVMQLLGDYCEQ 403 >UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID=C6ALW6_AGGAN Length = 413 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 104/402 (25%), Positives = 175/402 (43%), Gaps = 20/402 (4%) Query: 2 LTVKQIEAAK--PKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPL 57 LT Q+E K P K L DG GL+L + +G K W+ RY I +G +P Sbjct: 8 LTNTQVERVKYTPNGKNV-LNDGKGLFLEIYPTGAKKWRFRYERPITKARTKFNIGDHPS 66 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVG 111 +TL +AR K ++ GIDP + K N+F + W E+K++ Sbjct: 67 ITLAQARVKRDEYNALLAQGIDPQEHAKQKHQALQFQLENTFLKWAERWKENKEKKVKAD 126 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGA-------MERANKARRRC 164 + + + +L +G + I + P L++ + E + + R Sbjct: 127 TLRKDWRRIEMYLLESLGQIPIDKVLPPLLIQALTPLEAMKDRRTGTADSDTLKRVIRLA 186 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 E+ YA+ G +NP + D ++ P + +++P ++ + Sbjct: 187 NEILTYAMNAGAIPFNPCLSVKDIYSFAPAESHPHIEPEELPLLLTDISESKAQPRTKDL 246 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 T +R E + W D EN++ TI A MK + H VP+S Q + LL L S Sbjct: 247 ILFQLLTMVRPSEASNAEWAEFDLENKVWTIPAEKMKMKHPHKVPLSSQTIRLLQHLQSQ 306 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWP-ADA 343 T FVFA RN +P+ +V + +GY+G + HG R T + E + + Sbjct: 307 TGH-KRFVFASRNKINEPMNSQSVNKALVDMGYKGKQDAHGLRSIGRTYIGEKQMDGYEV 365 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +E+ +AH G S IY+ A + ++R +MQ W D++++ E Sbjct: 366 LEMCIAHKVGTSTGKIYDKADFFEQRIPIMQAWGDFVEQCAE 407 >UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SVD1_ACILW Length = 399 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 131/391 (33%), Positives = 196/391 (50%), Gaps = 11/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID-GKEKILTVGKYPLMTL 60 L+ K + + P+EK YR LDG GLY V SG K WQ RYK GK + +G YP ++ Sbjct: 11 LSEKTLSSLVPEEKDYRELDGVGLYFLVKKSGVKNWQYRYKNSEGKWAWMGLGAYPQVSA 70 Query: 61 QEARDKAWTARKDISVGIDPVKAK-----KASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 Q AR KA +S G K + + F + +EW + K W T+ Sbjct: 71 QLARQKAREFTSALSKGESLKSKKVLLEERKELESFYFENLMREWLDTKSSKWGEATYTK 130 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR-GAMERANKARRRCGEVFRYAIVT 174 K + I+P+ G ++I P + + + + G + K + +A Sbjct: 131 AQKSIEKHIIPVFGQGNYKEITPKEWFDFFQGLQRTLGIHTQIEKLVSYVRGCYDWAKFK 190 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 G+ NP ++ + Y N F+ D++PA K + + I ++L R Sbjct: 191 GKINSNPIEGMSKHLDAYESGNMDFVTVDELPALLKKIRNNKKRAIG-IGLELLMMLFPR 249 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W+ DF+ + T A + K R+ H VP+S QV+ LLT L SI +P SEF+F Sbjct: 250 PGELRMAKWEQFDFKKALWTKPAEMTKTRQEHQVPLSKQVITLLTELRSI-QPESEFLFP 308 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD-AIEVQLAHANG 353 R K I + L + ++GY+G ++ HGFRH STI+N+ + IEV LAH Sbjct: 309 SRLSVNKTISDMTFNLALNRLGYKGKQNPHGFRHLASTILNDAFSDQEQVIEVCLAHKKK 368 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 G V+G+Y+ +Q+LD+RR +MQWWAD+LDE V Sbjct: 369 G-VKGVYDKSQHLDERRVLMQWWADYLDELV 398 >UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J426_COMTE Length = 416 Score = 298 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 130/403 (32%), Positives = 198/403 (49%), Gaps = 19/403 (4%) Query: 1 MLTVKQIEAAK--PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT Q A P K R D GLYL V +G + W +Y+ DGKE L +G+YP + Sbjct: 1 MLTDAQCRNAVCSPGAKRERFSDAGGLYLEVSPAGSRRWFWKYRKDGKEGRLALGRYPEV 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGY 112 +L AR AR S GIDP KA+K ++F A+ EWYE + WS G+ Sbjct: 61 SLTAARKARDAARLQKSEGIDPAKARKLEKLVNPTGVADTFKAVALEWYEKQVPRWSPGH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + + D+ P IG E+ I+PM+LL V+++ E RGA+E A++A +V+RY + Sbjct: 121 AERMHRQLERDLFPWIGEREMAQIQPMELLAVLQKVEARGAVETADRALMLARQVWRYWL 180 Query: 173 VTG-RAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRY 230 T + + L + YR NFP + + +A+ + G A + Sbjct: 181 PTASNTQRDITEGLKARLTPYRGTNFPAIVEPQRFGELLRAMYAYKGGPFVRTALLLAPL 240 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQVVELLTTLSS 283 R LR M W +D + + I ++ MK + HVVP+ Q V +L L Sbjct: 241 LYQRPGNLRMMEWAELDLDAALWKIPSAKMKRSVQEKENGEPHVVPLPKQAVAMLRELLP 300 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM-NEHEWPAD 342 ++ +VF G+ D +P+ +N+V + +G +S HGFR T++ ++ + Sbjct: 301 LSG-RGRYVFPGQRDHDRPMSDNSVRTALYSLGVGEEQSWHGFRASARTMLVDQLDLDPL 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 AIE LAHA + YN +YL KR + +Q WAD+LD E Sbjct: 360 AIEANLAHAVKDANGRSYNRTKYLAKRFDQVQQWADYLDRLRE 402 >UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcus RepID=A3ZAX6_9SYNE Length = 426 Score = 298 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 119/400 (29%), Positives = 194/400 (48%), Gaps = 19/400 (4%) Query: 1 MLTVKQIEAAKPKEKP--YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 ML+ K I+A +P + D +GLYL+V SG K W+ Y+ G + T+G YP + Sbjct: 1 MLSDKAIQALRPDPDRPGTKHHDRDGLYLWVARSGSKTWRKDYRWQGARRTFTIGPYPAV 60 Query: 59 TLQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 L +AR +A I GIDP + +A S++ F I + W+EH WS Y Sbjct: 61 RLADARKQALELNTWIKAGIDPRTQVPTQQRNQAESSSRPFVQIAQAWFEHHSASWSPRY 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQL-LEVIRRFEDRGAMERANKARRRCGEVFRYA 171 ++ + + ++P +G L+I+ I + +++ RGA E+A + V +A Sbjct: 121 CRDMREKLNHFVIPALGQLDIEAISRSDIETQLLAPILARGANEQARRCNDVTRRVIEHA 180 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV----SLIATKV 227 + + NPA + R ++ + ++P + + F + SLIA ++ Sbjct: 181 VDLELRQDNPAVKARKVIAATRVTHYHRISWVELPELLEVIDRFERQRLAERSSLIALRL 240 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 + T +R ELR W VD E R I A MK R H+VP+S Q L IT Sbjct: 241 MMLTLVRPSELREARWSEVDTEGRQWIIPAERMKTRVRHIVPLSSQARHLFDMQRPITGH 300 Query: 288 VSEFVFAGRNDKKKP----ICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPAD 342 + VF N + + + ++++++G++G ++ HGFR T E + P Sbjct: 301 T-DLVFHTPNHRGSGELRVMSNGCLSMLLRRMGFQGRQTPHGFRGFGQTNCIEQLKIPRV 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 E QLAHA+G SV Y+ A+YL++R +M+Q WAD LD+ Sbjct: 360 VTEKQLAHADGNSVSRAYDWAEYLEERSDMLQRWADLLDQ 399 >UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TYD6_MARAV Length = 412 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 121/393 (30%), Positives = 198/393 (50%), Gaps = 15/393 (3%) Query: 2 LTVKQIEAAK--PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT ++ A K +L DG GLYL + +G + W+L+Y+ GKEK+L +G YP ++ Sbjct: 8 LTETAVKHATFSKYGKRTKLADGAGLYLDIQKAG-RYWRLKYRYGGKEKLLALGVYPDVS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEH-KKQVWSVGY 112 L+EAR K A++ ++ IDPV ++ +F I EW EH K+ Sbjct: 67 LKEARAKRDEAKRLLADNIDPVTHRQREKAERVEATATTFKGIALEWLEHVHKKNVGATT 126 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + + + P +G + +IEP +L ++R E +G ++ A++ + G+VFRYA+ Sbjct: 127 YPKNKRRLEMYAYPKLGRRPMAEIEPPDVLAILREIEGKGHVDNAHRLKTLIGQVFRYAV 186 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TGRA + DL + K+ + D+I K + T+ GS +A K+ Y Sbjct: 187 STGRATRDVTADLRGILPAPNVKHHAAVTTPDEIADMLKKIDTYWGSPTVCLALKLSPYL 246 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 LR LR M W+ +D++ T K + VVP++ Q ++LL L + E+ Sbjct: 247 FLRPGNLRHMRWEEIDWDAATWT--TDTTKNGEPLVVPLARQAIDLLKELQELNGNR-EW 303 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAH 350 VF K +P+ ENA+ + ++ +G+ S HGFR T++ E + + IE+Q+AH Sbjct: 304 VFPSGAGKGRPMSENAITGALNRLELQGIMSAHGFRAMAKTVLTERLGFRTEIIEMQMAH 363 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 YN +L +R+ MMQ WAD+LD Sbjct: 364 RVRDVHGRAYNRTTWLPERQAMMQQWADYLDNL 396 >UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetobacter RepID=C6RSU9_ACIRA Length = 426 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 120/405 (29%), Positives = 200/405 (49%), Gaps = 27/405 (6%) Query: 2 LTVKQIEA----AKPK-----EKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKIL 50 LT +I+A K +K RL DG GL L + +G +W+ Y + K + Sbjct: 8 LTDSKIKAFLRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPVSKKRNTM 67 Query: 51 TVGKYPLMTLQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHK 104 TVG YP M+L +AR+ R ++ G DP V+ K+ +F ++ + + Sbjct: 68 TVGNYPAMSLAKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSVAELYKS-- 125 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 KQ + +F+ + +G + I DI P L +VI + E++G +E A + R + Sbjct: 126 KQRLAEATVKRNDGIFEK-LYRDVGNMPISDITPRDLAKVIEKDENKGHIESAMRIRSKA 184 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNK-ALATFSGSIV-SL 222 +VFR+A+ G + + A DLA + K ++ L A + + +V Sbjct: 185 SQVFRFAVKMGLCERDVAQDLAGTITQREKNHYSALTDPFDFACLLFDIDHYESQLVHVK 244 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRII--TIDASVMKGRKIHVVPMSDQVVELLTT 280 +A ++ +R ELR+ W +++FE T + K H+VP+S Q + +L Sbjct: 245 LALQLAPLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVPLSTQAIAILKE 304 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNE-HE 338 + T S+FVF R+DK +PI + ++ + ++++GY + +GHGFR T+++E E Sbjct: 305 ALNFTNN-SDFVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHGFRAIARTLLDEVLE 363 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +P D IE QLAH YN ++LDKRR MMQ W+D+ DE Sbjct: 364 FPLDIIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSDYCDEL 408 >UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZI9_ACILW Length = 401 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 123/401 (30%), Positives = 197/401 (49%), Gaps = 26/401 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLMT 59 LT ++ AK KEK Y L D +GL L V +G+K W RY + G K + +G+YP+M+ Sbjct: 3 LTEIKVRQAKSKEKIYFLADDDGLSLKVEPNGRKSWSYRYSLAGTNKRPRMKLGEYPVMS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-----SVGYAT 114 L+EAR + + + KK +F I +EW E K + G Sbjct: 63 LKEARSVRDEYK--FNNYENKPLHKKYIK---TFQDICEEWLEFKIKNSFEDEPRCGVIQ 117 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 K D D+ P IG + +I+ L+++I++ E R E KA +++ YA+ Sbjct: 118 LAKKCLDQDVYPNIGLMPFIEIKRYDLVKIIKKIESRNVKEPVKKAYSYLNQIYDYAVAM 177 Query: 175 GRAKYNPAPDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G +YN A L + + KKN+P L +D++ F L + + A YT + Sbjct: 178 GYCEYNIAHGLHKILVNNKIKKNYPHLNSDELSNFLAKLNQINTDPIIKKALLFKLYTGV 237 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRK----------IHVVPMSDQVVELLTTLSS 283 R EL + D + +I I A +K + VP+SDQ +E++ + Sbjct: 238 RGGELLLCEPHHFDLDKKIWKIPALHIKQYRRKVILGHDIPDFFVPLSDQALEVVKSA-L 296 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPA 341 + ++VF+ + KPI N + L+I+++GY + + HG R FSTI+NE + + Sbjct: 297 VWSHGEKYVFSSPRNNNKPIHFNTLNLIIRKMGYTKNELTSHGLRSTFSTILNESGLFQS 356 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + IE QL+H + R YNHA+Y ++R EMMQWW D++D Sbjct: 357 NWIEAQLSHTDKNKTRASYNHAEYFNQRMEMMQWWGDFIDS 397 >UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria RepID=Q3SF40_THIDA Length = 440 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 114/421 (27%), Positives = 191/421 (45%), Gaps = 39/421 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID-GKEKILTVGKYPLMTL 60 L+ ++ KP ++ + DG GLY+ + +GK+ W L+Y+I GK++ + +G YP +L Sbjct: 3 LSDSKLRTLKPADRVFSESDGGGLYIEIMPTGKRRWGLKYRIPTGKQETIRLGDYPAYSL 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW------------ 108 +AR + G+ P+ K+ + KE + + W Sbjct: 63 ADARTWRDDCKALAGRGLSPMALKRGDPIPEDAAPAAKELAQFFIRNWCMKAVEKAKAKE 122 Query: 109 -----------------------SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVI 145 + + ++ D D +P IG +I D+ +L + Sbjct: 123 AEAKAADTVEAFAWRWYAEIVEPANSNPRNIKRILDKDAIPAIGSKQIADVTVTDILAIT 182 Query: 146 RRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQI 205 + ++RGA + A + R +F YAI + +NPA + K L ++I Sbjct: 183 DKIKNRGADQMALQTRNVLKRLFAYAIAREKTTFNPAAAIEAKFIAQAKSRDVALSPEEI 242 Query: 206 PAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKI 265 +A+ S +A +L +R EL W+ +D E I MK K Sbjct: 243 GRLLRAIYQSSMKRAHKLALHLLILCMVRKSELTEAKWEELDLEKAEWAIPGERMKKDKP 302 Query: 266 HVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGH 324 H+VP+S Q V + L + SE+VF R+ KKPI NA+ V++ + + H Sbjct: 303 HLVPLSRQAVAMFEELKGLASG-SEWVFPSRSSLKKPIAHNALNTVVRALEADVRDFVIH 361 Query: 325 GFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 FR ST ++E + +D IE LAH G +RG+YN AQY D+RR+M+QWWAD++D ++ Sbjct: 362 DFRRTASTHLHEAGFNSDWIEKALAHETKG-IRGVYNRAQYADQRRDMLQWWADFVDSQI 420 Query: 385 E 385 + Sbjct: 421 Q 421 >UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C3XC22_OXAFO Length = 427 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 118/407 (28%), Positives = 199/407 (48%), Gaps = 26/407 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 L+ QI+ KPKEK Y+L DG GLYL V SG K+W+L++ K GKE L++G YP ++L Sbjct: 8 LSPIQIKNTKPKEKAYKLFDGGGLYLEVLPSGSKLWRLKFQKPSGKESRLSLGAYPDVSL 67 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNS-------------FSAIYKEWYEHKKQV 107 ++ R K AR+ ++ GIDP + +K F I Y KK Sbjct: 68 EQVRKKREEARRLLAQGIDPSEDRKEQKEAKQEQDVIRAFKDDRMFERIAMRLYASKKGR 127 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR------GAMERANKAR 161 + Y + + F+ + P IG I +IE +L + + ++ A K Sbjct: 128 TTDDYRNTMLRQFELHLFPAIGKKNIAEIEGRELFTLFKAVSEKLNSKGKPMTYMARKLC 187 Query: 162 RRCGEVFRYA--IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 + EV+ A + A NP + + ++ ++ + ++P F +AL + G I Sbjct: 188 QWAAEVYDLANVENSSFALNNPCRSVIKFLPKHQTEHMARIGFTELPQFIQALEAYGGHI 247 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 ++ A +L YT +R +R W + D I + + IH++P+ +Q + LL Sbjct: 248 LTKSAIWMLLYTGMRQTSIRRAQWSDFDLNKGIWNRKPEKV-DKNIHIIPLPEQAISLLK 306 Query: 280 TLSSITKPVSE-FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 + + SE VF + + E A+ I+++G++ +GHG R ST +NE Sbjct: 307 DIQLLATGNSENLVFPSVFAGQLKMSEAAIGQAIERMGFQ--MTGHGLRSVVSTGLNELG 364 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + +EVQL H G ++ YN+AQ+L++R++MMQ WA++L+ E Sbjct: 365 FTPRLVEVQLGHKKGDAIEAAYNNAQHLEERKKMMQRWANYLNSFKE 411 >UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepID=Q1QLT5_NITHX Length = 416 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 202/398 (50%), Gaps = 21/398 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I AKP +KP+++ D GL+LYV +G K+W+ RY+ KEK+LT+G YP ++L Sbjct: 6 MLTDTAIRKAKPGDKPFKMADSGGLHLYVSTAGGKLWRFRYRYADKEKLLTIGPYPDISL 65 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYAT 114 +AR A+ + G DP KK N+F AI +EWY+ K W +A Sbjct: 66 VDARAARDAAKASLRDGRDPGVIKKLRKLANVTSTANTFEAIAREWYDLNKGQWVERHAD 125 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ + ++ P++G + + DI+ ++L V+R E R A E A + R+R VF YAI + Sbjct: 126 DVLTSLEREVFPVLGNIPVADIKAPEVLAVLRGIEAR-AKETARRVRQRMSAVFVYAISS 184 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPA-DQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 GRA +PA + AM K P + D + +A +++ T + Sbjct: 185 GRADADPAATVQKAMAPMVKGRQPAITDLDAAREMLGKAEAEKAHPATKLALRIIALTVV 244 Query: 234 RTKELRSMLWKNV-DFENRIITIDASVMKGR--------KIHVVPMSDQVVELLTTLSSI 284 R L + W D E+ + I A+ MK R + H VP+S Q +E + L ++ Sbjct: 245 RPGTLITTPWSEWTDMEDGVWRIPAARMKLRLQHKDDDARDHWVPLSRQALEAVEALRTL 304 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD-- 342 T F + + ENA+ ++ + GY HG+R FS++MNE +PAD Sbjct: 305 TG-RGPIPFPNTRHAHRTMSENAIGYLLNRAGYHHRHVPHGWRATFSSVMNE-RFPADKP 362 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 I++ LAH V G YN A +L++RR++ Q WAD + Sbjct: 363 IIDLMLAHVPKDKVEGAYNRALHLERRRKLAQEWADLI 400 >UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacter baumannii SDF RepID=B0VTB2_ACIBS Length = 388 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 115/388 (29%), Positives = 192/388 (49%), Gaps = 17/388 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ Q+++ KPKE Y + DG GL + V +GKK W L Y+ +GK+ +G+YP+M Sbjct: 1 MLSDAQVKSLKPKESRYSVADGEGLNISVFPNGKKKWVLSYRQNGKQNQKMLGEYPVMGC 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 +EAR +A + ++ + +N+ + +EW K W+ + + Sbjct: 61 KEARLQARQLK---------LEYQGKVANSPPVHKVIEEWLSIMKSQWTSKKYYDTVEYR 111 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + L I ++E + + I+ +G +E A++A R +VF +AI + N Sbjct: 112 LAYLTEDFKNLPINEVERKHISKKIKEIVAKGTLETASRALRLGKQVFDFAIASDYTDRN 171 Query: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 P + D + Y + P LPA ++P F + + S + +A ++ YT R EL Sbjct: 172 PCTLVEDVIPEYESDSHPCLPASEMPEFFRRMQASHSSSIVKMAMLLVCYTGTRITELLK 231 Query: 241 MLWK--NVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 W +DFEN++ I A MK RK +VP+ Q+ L L S+ ++F R Sbjct: 232 ARWDSGELDFENKVWIIPADRMKRRKELMVPLVPQIYALFKELESVKIDDG-YIFKKRGK 290 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANG---- 353 + + +VL +IK++GYE HGFR FST NE + + + I+ Q+AH N Sbjct: 291 PYEYMTSESVLTMIKRMGYEDKMVTHGFRSLFSTHANESKLFRGEVIDYQIAHVNKSTKA 350 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 IYN A+Y D+R E+M W+A+ ++ Sbjct: 351 DKTSKIYNRAEYWDERVELMTWYANEVE 378 >UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8S0_ACIBT Length = 433 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 114/406 (28%), Positives = 192/406 (47%), Gaps = 26/406 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT + + KPK+K Y DG GLYL V +G K W RY + + K + +T+G YP ++ Sbjct: 8 LTDTKCASLKPKDKEYVEADGGGLYLRVRPTGAKSWIFRYTNRGNDKREKITLGPYPALS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK----ASSNNNSFSAIYKEWYEHK--KQVWSVGYA 113 L +AR+K + I+ G+DP + +N N+ + + W + ++ S Sbjct: 68 LAKAREKKHEFLRMIAEGVDPKEQLSILLAKKNNVNTLENVVRVWLDAYAVRKPLSEDTK 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + F++ + P I+ I L + + D + + A + R +V+ YA+ Sbjct: 128 NKQLRKFENHLFPKFKDKAIEQITLRDLKDALNVIYDH-SPDNAQRIRASLIQVYSYAVQ 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 + N A DL D RK + F D IP + + SG+ ++ + + +T Sbjct: 187 HSYIQTNIARDLEDMDLSARKNHRATFRSLDLIPQLIRRIKADSGNPLTKLCLLLGLHTF 246 Query: 233 LRTKELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTT 280 LR+ E+R W +DFE I I K ++ H+VP+S Q +E+L Sbjct: 247 LRSSEIRFARWNEIDFEAEIWRIPPRRRLIEGVKHSDRGAKMKEEHLVPLSKQSIEILEK 306 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHE- 338 + + +FVF N+K+ I EN ++++GY E S HGFR + + E Sbjct: 307 VYQYSGDC-DFVFPSLNNKRIFISENTPNDALRRMGYTKEEISFHGFRALARSALGEMSI 365 Query: 339 WPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEK 383 + DA+E Q++H G Y H A+YL++R ++MQ W+DWL Sbjct: 366 FSRDALEKQMSHQERNETVGAYTHIAEYLEEREKIMQIWSDWLSAI 411 >UniRef50_A7H3V7 Putative site-specific recombinase, phage integrase family n=2 Tax=Campylobacter jejuni RepID=A7H3V7_CAMJD Length = 399 Score = 292 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 106/395 (26%), Positives = 179/395 (45%), Gaps = 16/395 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLM 58 ML +I+A K K+K Y + D + L L + SGKK + YK + K +T+G+YP + Sbjct: 1 MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTL 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 L AR + + +++ + + +F + E E KK S Sbjct: 61 NLANARKQRDNLKVNLAENDSIRE-----KSEITFKELALEKMELKKLELSEKTYKSYVS 115 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 I G + + ++ +L+ +F E A+K E+FR+ ++ K Sbjct: 116 YLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTLLNEIFRHGVIKEYIK 175 Query: 179 YNPAPDLADA---MKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NP +L + K + L +I A + + G I IA TA R+ Sbjct: 176 SNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLLTAQRS 235 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 +RS W+++D EN I I MK ++ H +P++ Q V +L ++ ++F Sbjct: 236 FSIRSAKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTG-YLFYS 294 Query: 296 RNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNE----HEWPADAIEVQLAH 350 K + I +N + + +++GY + HGFR FST+ +E H+ +D IE+ LAH Sbjct: 295 LRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLAHENRNKHQMSSDIIELCLAH 354 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 ++ YNHA L ++ +MQWW D+LDE E Sbjct: 355 VEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIAE 389 >UniRef50_C8NCE3 Phage integrase family site-specific recombinase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCE3_9GAMM Length = 401 Score = 292 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 129/394 (32%), Positives = 203/394 (51%), Gaps = 16/394 (4%) Query: 2 LTVKQIEAAKPKEKPYR-LLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILT--VGKYPLM 58 LT Q A +K R DG GL L V GKK W+L Y++ G +K T G YP + Sbjct: 3 LTETQCRTAAAPDKNVRKYFDGGGLCLQVTSDGKKYWRLYYRMPGSKKQQTVSFGVYPKV 62 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKK--QVWSV 110 +L++AR + + I+ GIDP A K N+F+ + K W EH+ + W Sbjct: 63 SLKQARQRRDEVKLLIARGIDPKLAAKQLRQDRTVALENTFADVAKRWLEHRAEVKKWGK 122 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 + M + + P IG + +IEP Q+L V++ + G +E ++K +VFRY Sbjct: 123 QHQRATRSMLERYMYPRIGDYPVTEIEPTQILRVLQELQAAGKIETSHKLLSATTQVFRY 182 Query: 171 AIVTGRA-KYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVL 228 A++T R KYNPA DL++ + + F + +I AL ++GS + ++ Sbjct: 183 AMITIRICKYNPAADLSELLVTGKSVPFRHITDPGEIGRLLVALDEYTGSPQARGLARLH 242 Query: 229 RYTALRTKELRSMLWKNVDFENRIIT-IDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 R E+R M W +DFE R+ D ++ + ++ VP S Q E++ L +T Sbjct: 243 PLIFTRPTEIRLMRWDEIDFEQRLWRRSDDETVRRKNVNAVPFSRQAWEIIAGLRLVTG- 301 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 +++VF + + KP A V+K IGY HG+RH ST+++ ++ + +E Q Sbjct: 302 RTDYVFCNIH-RNKPFSAGAEGKVLKSIGYHEKIVPHGWRHTASTLLHNQDYDSIWVEKQ 360 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 L H + VRG YNHA YL++RR+M+Q WAD+LD Sbjct: 361 LGHTDKNEVRGTYNHADYLEQRRKMLQEWADYLD 394 >UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE42_ECOK1 Length = 418 Score = 290 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 110/394 (27%), Positives = 190/394 (48%), Gaps = 14/394 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYP--LM 58 MLT +++ KP++K Y++ D +GLY+ V SG ++ Y+I+G+ + L +G+Y + Sbjct: 1 MLTDTKLKNLKPQDKLYKVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGI 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW--SVGYATEL 116 +L EAR++ A+K + G P AK+ + + + + + Sbjct: 61 SLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVILADSTRAMK 120 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D DILP++G + +I + ++ R +RG A +AR V+R+A G Sbjct: 121 QAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDRGH 180 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 +NPA D+ + K L ++I F + L +A K++ T +R Sbjct: 181 GLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVRKG 240 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E + W +DF+ TI + MKG + HV+ + Q ++L L SE++ GR Sbjct: 241 EFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAGG-SEYLVPGR 299 Query: 297 NDKKKPICENAVLLVIKQ----IGYEGLE----SGHGFRHEFSTIMNEHEWPADAIEVQL 348 + +KP+ A+ +I + I +G + H R ST+++E +P+D IE L Sbjct: 300 YNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEKAL 359 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 AH G VR +YN A+Y +R M+Q WAD +D Sbjct: 360 AHEQKG-VRAVYNKAEYARQRAYMLQQWADMIDS 392 >UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UI65_ECO1A Length = 352 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 136/273 (49%), Positives = 188/273 (68%), Gaps = 6/273 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +QI+ AKPKEK Y+L DG GLYL V +G K W+L+Y++ GKEK+L +G YP +TL Sbjct: 3 LNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAGKEKLLALGVYPEVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K A++ I+ GIDP++AK+ NN+F I EW+ K + WS GYA++ Sbjct: 63 DARAKREDAKRGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYASD 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F+ D+ P IG I +I+P++LL V+RR E RGA E+A K R+RCGEVFRYAIVTG Sbjct: 123 ILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIVTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA+YNPAPDL AM+G+ ++PFL A ++P F KAL+++SGS + ++A ++L T LRT Sbjct: 183 RAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGLRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVV 268 ELR LW +DF I I AS MK R+ H+V Sbjct: 243 GELRGALWDEIDFNKAIWEIPASRMKMRRPHIV 275 >UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q072_9GAMM Length = 402 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 189/397 (47%), Gaps = 18/397 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT +IE AKP++KPYRL DG GL L V SG K W L+Y K+ ++ +G+YP + Sbjct: 8 LTTTEIEKAKPQDKPYRLYDGEGLLLNVASSGTKTWYLQYSKPFTKKKDMVNLGRYPTVN 67 Query: 60 LQEARDKAWTARKDISVGIDPVKA------KKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR + ++ +S IDP +K + F ++++EW KK ++ Sbjct: 68 LADARKQKNYCQELLSKDIDPKTHFEEEARRKEYEHRTDFKSVFEEWLPTKK--YAPKTV 125 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ ++L +IG + + + V++ E G + + K R + YAI Sbjct: 126 EKMENYI-KEMLAVIGNKPVNQVTTEDCMRVLKPVESAGHLTKLEKMRSMMSQTIAYAIA 184 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGRAK NP L + P L + +++ ++ G + A Sbjct: 185 TGRAKENPCIHLRGVFMTPETTHAPAILDEAGLTRLVQSIYSYHGHFATRKALLFAIIMF 244 Query: 233 LRTKELRSMLWKNVDFENRII--TIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 R E+R + W+++DFE T + + + P+ Q VE+L + + +E Sbjct: 245 ARPGEIRHLKWQDIDFEYNNWQYTPNKTRKSTGVSMMSPLPTQAVEILKEMKAY--KNAE 302 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEH-EWPADAIEVQL 348 VF N +P+ EN + ++++G+E E + GFR T++ E ++ IE+QL Sbjct: 303 LVFPSSNSTSRPLSENTLNQALRRMGFENTEQTSQGFRAIARTVLEEKFKYDYRWIELQL 362 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 H S YN Q+LD+RREMMQ WAD+L ++ Sbjct: 363 GHQVRDSNGRAYNRVQWLDERREMMQKWADYLFSLIK 399 >UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N3S0_9GAMM Length = 397 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 118/392 (30%), Positives = 192/392 (48%), Gaps = 11/392 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGK---KVWQLRYKIDGKEKILTVGKYPL 57 ML+ I + K +K R D +GL L + S K K++ R++ D K + +T+G Y Sbjct: 1 MLSDSLIRSLKLGDKK-RHTDRDGLVLELRPSKKQLKKIFIFRFQWDKKPQTITIGDYRS 59 Query: 58 MTLQEARDKAWTARKDISVGIDP-VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 + L ARD A R ++ GIDP K +A +F + +W++ K W Sbjct: 60 VGLGAARDIALAYRNMVNSGIDPRSKNVEADQEKITFEVVADQWFQKYKGTWKDFARNRH 119 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 +K DI+P+IG I DI LL +I+ ED G + A++ R +F +A+ + Sbjct: 120 SKSLSRDIIPLIGDKPIDDITKADLLFIIKPHEDLGHHDVAHRLYARLQSIFEFAVGSSL 179 Query: 177 AKYNPAPDLADA-MKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + P L A + R N P + ++ + + + + + + ++L + R Sbjct: 180 TENFPFIGLKKALIPKPRVINQPAISSNNAHEMMRVIKQTNSTKIVKVYMELLAHLFTRP 239 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + I A MK H VP++ V+ LL L IT + ++F+ Sbjct: 240 TELREAKWSEFDLQKSEWNIPAERMKMGIPHWVPLTPHVLNLLKELRLITG-FTPYLFSS 298 Query: 296 RNDKK-KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANG 353 KK KPI E +V ++ G++ + HGFR S++++E + +DAIE QLAH Sbjct: 299 PALKKAKPISEASVRKLLHNAGFKNRHTAHGFRSLASSVLHEQGNFRSDAIEAQLAHKVQ 358 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADW-LDEKV 384 G VRG+Y A + +RRE+M W++ W LDE + Sbjct: 359 G-VRGVYLRADFKAERRELMHWYSSWLLDEHI 389 >UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobacteria RepID=A9VZC1_METEP Length = 412 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 116/388 (29%), Positives = 179/388 (46%), Gaps = 14/388 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q+ A K P R DGNGLYL V SG K W LR + G+ + + +G L+TL Sbjct: 22 LTTVQVRALK---VPGRYADGNGLYLVVEPSGSKRWLLRTIVQGRRRDIGLGGAGLVTLA 78 Query: 62 EARDKAWTARKDISVGIDP-VKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAKM 119 EAR+KA RK G DP + +KA + +F+ ++ +E K W +A + Sbjct: 79 EAREKALAYRKLARDGGDPLAERRKARATVPTFAEAAEQVHEEHKASWKNPKHAAQWITT 138 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAK 178 P +G + IE +L + E A + R+R G V +A G R Sbjct: 139 LRTYANPHLGARRVDQIETPDVLRALSPIW-LTKGETARRVRQRIGTVLDWAKAAGHRTG 197 Query: 179 YNPAPDLAD--AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NP +A +G R ++ LP ++PAF L + + +A + L TA RT Sbjct: 198 DNPVESVAKGLPKQGERDEHHAALPYAEVPAFVTRLQSSDHGEAARLAFEFLILTAARTS 257 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+ W+ +D + T+ A+ MK + H VP+S + +E++ + S F+F GR Sbjct: 258 EVLRAEWREIDEAEALWTVPAARMKAGREHRVPLSKRSLEIVRRAKLLAGD-SAFIFPGR 316 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGS 355 + K P+ L+ ++++ + HGFR F E P + E+ LAH Sbjct: 317 STGK-PMSNMVFLMALRRMKL--TVTAHGFRSSFRDWAAEATSLPREVAEMALAHTIENR 373 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEK 383 V Y L KRREMM+ W+ ++ K Sbjct: 374 VEAAYRRGDLLAKRREMMEQWSTFVASK 401 >UniRef50_B8F737 Phage integrase family site specific recombinase n=4 Tax=Pasteurellaceae RepID=B8F737_HAEPS Length = 416 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 182/404 (45%), Gaps = 24/404 (5%) Query: 5 KQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMTLQE 62 QI AKPK+K Y L DG GL L V SG KV+ Y T+G+YP ++L + Sbjct: 8 TQIRQAKPKDKDYPLSDGGGLRLIVRKSGAKVFVFNYYKPYTKTRTNFTIGEYPEISLIQ 67 Query: 63 ARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKK--QVWSVGYAT 114 AR + AR ++ IDPV+ ++ +F + +W+E +K +S A Sbjct: 68 ARKEHAKARALLAQNIDPVRQRELDKQEQANRLELTFEKMAVKWFEDRKLKADFSERTAK 127 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + +F ILP G I +I P+ + ++ E G +E K + EV RYA+ Sbjct: 128 DTWALFKRHILPHFGNYPISEITPLIAINALKPLERAGKLETIRKTIAKINEVMRYALHR 187 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGS----IVSLIATKVLRY 230 G N D+ ++ + D++ F +A + A ++ Sbjct: 188 GLIATNNLSDIGKEFDKPTPQSMNTIQPDELAEFLQAFYQKRDKGRFGLNVFYAVMLVLL 247 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVM-KG---RKIHVVPMSDQVVELLTTLSSITK 286 T R E+ W+++D + R+ K + H+V +S Q +ELL + + Sbjct: 248 TGGRPSEIAKAKWEDIDEKERLWAYQVQKGNKNLPEGRTHIVTLSRQSIELLNKMRHFNE 307 Query: 287 P-----VSEFVFAGRNDKKK-PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWP 340 S FVFA KK + + I + E + HG RH FST +NE + Sbjct: 308 VVNANIQSPFVFASVASKKTGHLSIETMRKAIIKSIGEDRLTTHGIRHLFSTSLNEQNFN 367 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 AD IE L+H + +RG YN A YL++R +M+Q WAD+++E Sbjct: 368 ADWIERALSHKDRNRIRGSYNKANYLEQRFDMLQHWADYVEELA 411 >UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=B5JZM6_9RHOB Length = 411 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 176/385 (45%), Gaps = 13/385 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + A P + DG+GL+L V SG K W R + GK + +G L++L Sbjct: 25 LSAAFVRTA---TTPGKYNDGHGLFLKVVTSGAKRWVQRIVVRGKRTEIGLGSASLVSLA 81 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMF 120 EAR+ A RK G DP++AK+ S +F ++ ++ + W + +A + Sbjct: 82 EARETALENRKLARAGGDPLQAKRTSEALLTFEEASRKVHKIHEPTWRNKKHAAQFLSTL 141 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P + L++ ++ +L V++ E A + R+R G V ++A+ G + N Sbjct: 142 ETYTFPRMSNLKVSEVTTADVLAVLQPIWLE-KPETAKRVRQRIGTVMKWAVANGWRQDN 200 Query: 181 PAPDLADAMKGYR--KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA ++ A+ + K+ LP D++ A+ + + +A ++ TA R+ E+ Sbjct: 201 PAGAISQALPKQKQPVKHRKSLPYDEVSGCLVAVRSSRAFNATKLALELTVLTACRSGEV 260 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W +D TI A MK K H +P+S + VE+L ++ VF Sbjct: 261 RLAEWSEIDLAKAEWTIPAQRMKASKEHRIPLSGRAVEVLEAAKALDDGTG-LVFPSTT- 318 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWP-ADAIEVQLAHANGGSVR 357 P+ + + ++K +GY+ HGFR F T E + E LAH+ Sbjct: 319 -GNPLSDMTLSKLVKGLGYD--VDVHGFRTSFKTWCQERTTTAREVSEAALAHSIQNKAE 375 Query: 358 GIYNHAQYLDKRREMMQWWADWLDE 382 Y + +KRR++M+ W+ ++ E Sbjct: 376 AAYARSDLFEKRRKLMEQWSCFVAE 400 >UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUF6_ARCB4 Length = 405 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 114/396 (28%), Positives = 196/396 (49%), Gaps = 15/396 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I+ AK KEK Y+L DG LYL V +G K ++ + K K ++ G YP ++L+ Sbjct: 8 LTDTEIKKAKAKEKDYKLSDGENLYLVVKSNGTKFFRFDFSYTKKRKSMSFGIYPDISLK 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN-SFSAIYKEWYEHKKQVWSVGYATELAKMF 120 EAR+ A++ + I+P++AK ++ N +F I ++W + W Sbjct: 68 EARELREKAKEQLKQNINPIEAKSSNFGNISTFKYITEKWLKLMTSEWKHVTYELNENRL 127 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG I IE + +L +I++ +++ E A + +++YA+ G K+N Sbjct: 128 RMHVYPAIGDKPISSIEILDILNIIQKLQEKEYFEIAERILNVIERIYKYAVTYGYTKHN 187 Query: 181 PAPDLADAMKGYRK---KNFPFLPADQIPAFNKALATF----SGSIVSLIATKVLRYTAL 233 D+ +K ++I K + ++ I ++ A + Y AL Sbjct: 188 IIADIDKRTVFAKKIVIHRATLTKENEIKELLKDIKSYGELYKADISTIYALNIAPYLAL 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R +R + W V+FE + I A+ MK K V+P+S Q +E+L T+ + S++VF Sbjct: 248 RPYNIRLLEWNEVNFEKEYLDIPANKMKTNKDFVLPLSKQALEILKTIKPYSFDRSKYVF 307 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN----EHEWPADAIEVQLA 349 KP + + + ++GY+ + HGFR FSTI + EH + +D IE LA Sbjct: 308 PSPTSNLKPFSDATLNHALMKLGYKDKITSHGFRAMFSTIAHEKIKEHGFHSDIIESCLA 367 Query: 350 HANGGSVRGIYNH---AQYLDKRREMMQWWADWLDE 382 HA ++ YN +Y D+++ +MQWW DWL++ Sbjct: 368 HAETNKIKAAYNRESKMKYYDEKKGLMQWWTDWLNK 403 >UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family n=1 Tax=Citreicella sp. SE45 RepID=D0D2S4_9RHOB Length = 479 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 104/380 (27%), Positives = 188/380 (49%), Gaps = 12/380 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++++AA P + DG+GLYL V +G + W R I GK + + +G L+TL Sbjct: 104 LTAQRVKAA---TDPGKYFDGHGLYLLVKPNGSRSWVQRIVIRGKRREMGLGSASLVTLA 160 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMF 120 EAR+ A RK G DP++A++ + +F ++ YE + W + +A++ Sbjct: 161 EAREAALANRKVARAGGDPIQARQEALAVLTFEEAARKVYEMHRPTWRNPKHASQFINTL 220 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG +++ D+ +L V+ E A + R+R G V ++A+ G + N Sbjct: 221 ETYAFPKIGAVKVGDVNTNDVLRVLTPIWT-TKPETARRVRQRIGMVMKWAVAKGWRQDN 279 Query: 181 PAPDLADAMKGY--RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA ++ A+ + RK + +P ++P F + ++ +A + L TA R+ E+ Sbjct: 280 PAEAISQALPKHDRRKAHRKAMPYAEVPGFIATVKASKAGALTKLAMEFLILTAARSGEV 339 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W +D E I T+ A MK ++ H VP+S + +E+L+ +I+ S+ VF G Sbjct: 340 RGASWSEIDSEAAIWTVPADRMKAKREHRVPLSPRALEILSEARAIS-DGSDLVFPGSR- 397 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVR 357 + +P+ + + + +++G+ HGFR F E + P + E LAH Sbjct: 398 RGRPLSDMTLSKLTRELGFA--VDVHGFRTSFRMWAQEQTDAPREVAEAALAHTIRNQAE 455 Query: 358 GIYNHAQYLDKRREMMQWWA 377 Y + ++RR +M+ W+ Sbjct: 456 AAYARSDLFERRRSLMERWS 475 >UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJJ0_ACIJU Length = 406 Score = 285 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 126/404 (31%), Positives = 199/404 (49%), Gaps = 24/404 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ +I+ KP+EK YR+LD LY+ V +GKKVW+L+Y + KE +++G+YP ++L Sbjct: 1 MLSDTKIKNLKPQEKMYRILDAERLYIEVRPTGKKVWRLKYTLHSKEGTISLGEYPSVSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYAT 114 EAR K + + GI+PV+ K+ N+F AI +E+ + S Y Sbjct: 61 AEARKKKEEIKVLLKDGINPVQEKRKLHQENLIANSNTFKAIAEEYIVEGMKYKSKDYID 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR--------GAMERANKARRRCGE 166 + + + DI IG I+++ +L +++ R AN+ R Sbjct: 121 QFKRSMEKDIYKAIGHKPIREVTSADILSILKNTITRVRKLSHYGTGEAAANQNRLFISL 180 Query: 167 VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 V +YAIVT RA+ +P + +A++ ++ L D+ L + G+ A Sbjct: 181 VMKYAIVTLRAENDPTYAVKNAIESPETEHARPLDKDERIRLRTRLELYGGTTTVRNACL 240 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDAS--------VMKGRKIHVVPMSDQVVELL 278 + YT LR E+R M W VDFE R+I + K IH+VPMSDQ+ LL Sbjct: 241 AMMYTMLRASEIRRMQWSYVDFEERLIEFPKASRRRKQERSNKKNHIHLVPMSDQLFALL 300 Query: 279 TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 I++ + +VF+ + + + + IG + + H FR ST++NE Sbjct: 301 KEQFEISQYQT-YVFSAPFKNDEMLARTTLNRALVFIGMPEV-TTHDFRATASTLLNEKG 358 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + D I QLAH R YNHA+YL+ RR+M+Q WAD +D Sbjct: 359 YKPDWINKQLAHVEENKTRATYNHAKYLESRRKMLQDWADIVDS 402 >UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI75_9BACT Length = 398 Score = 285 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 176/387 (45%), Gaps = 13/387 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ A +P DG L+L V G K W R+ I GK + +G +P+++LQ Sbjct: 4 LTFGKLRAL---NEPGLYGDGGTLFLKVSPGGSKSWVQRFTIKGKRHDVGLGGWPVVSLQ 60 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN---NSFSAIYKEWYEHKKQVWSVG-YATELA 117 EAR++A+ R+ ++ G DP+ K+ +S +F A+ +++YE W G + Sbjct: 61 EARERAFDNRRAVAHGRDPLAEKQKASKAAAVPTFRAVARKYYEENLPRWKAGRHTDRWL 120 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ + P+ G + + + +L ++ E A K R R + + G Sbjct: 121 QVVEKYAFPVFGDVPVDRVGREDVLRMLTPIWTA-KPEYARKLRHRVRLILDWCQAHGYV 179 Query: 178 KYNPA---PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 N A A K++ LP ++ + S+ + + + L TA+R Sbjct: 180 HTNIAGEQIGGALPSMPSVKEHHRSLPYAEVSQALDLIEASGASLSAKLCLRFLILTAVR 239 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E R+ W+ +++E + TI A MK + H VP+S + +++L S + S +F Sbjct: 240 PGEARNATWEEINWETKTWTIPAGKMKAKAEHRVPLSREAMQVLERASRVRGE-SPLIFP 298 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANG 353 + KP+ + + +++ +G HGFR F T E P IE+ LAH+ G Sbjct: 299 SSLKRAKPLSDMTLTKLLRDVGLREKTVPHGFRSSFRTWAGEQTNSPTPVIELCLAHSVG 358 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 ++ Y + L KR+ +MQ W ++ Sbjct: 359 NAIEKAYTRSDLLQKRQRLMQEWGRYV 385 >UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EVM1_ECOLX Length = 396 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 104/394 (26%), Positives = 181/394 (45%), Gaps = 14/394 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYP--LM 58 MLT ++ KPKEK Y++ D +GLY+ V +G ++ Y I+G+++ +T G+Y + Sbjct: 1 MLTDTRLRHLKPKEKLYKVNDRDGLYVAVTPAGTISFRYNYSINGRQETVTFGRYGVGGI 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW--SVGYATEL 116 TL EAR++ A+K ++ G P + K + + W E + + + Sbjct: 61 TLAEARERLNEAKKMVASGRSPAREKARDKARIKDAETFGAWAEKWLRGYQMAESTRDMR 120 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 ++ ++ ++ +I L + +RGA A AR +V+R+AI G+ Sbjct: 121 RSVYQRELKSKFAQQKLTEITHEDLRALTDNIVERGAPATAVHAREIVLQVYRWAIERGQ 180 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NP+ + A + L +I + + + A K+L T +R Sbjct: 181 KVENPSDLVRPASIAKFEPRDRALTPVEIGLMYRYMERVGTTPSIRAAVKLLLLTMVRKS 240 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 EL + WK ++F + TI MK R H+V +S Q ++++ L + S+F+ R Sbjct: 241 ELTNATWKEINFSEALWTIPKERMKRRNPHLVFLSRQAMDIMIALKTFAG-SSDFILPSR 299 Query: 297 NDKKKPICENAVLLVI--------KQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQL 348 D P+ + V+ K+ H R ST+++E + D IE L Sbjct: 300 YDSDAPMSSATLNRVLTLTYRLAQKEGDLLPKFGPHDLRRTASTLLHEAGYNTDWIEKCL 359 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 AH G VR +YN A+Y ++R EM+Q WA+ +DE Sbjct: 360 AHEQKG-VRAVYNKAEYREQRAEMLQDWANMIDE 392 >UniRef50_C9M6R5 Site-specific recombinase, phage integrase family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6R5_9BACT Length = 393 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 119/391 (30%), Positives = 187/391 (47%), Gaps = 14/391 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I+ K E Y +LDGNGLYL V +G+KVW +RY ID K LT+G YP+M L Sbjct: 1 MLTDTAIKRLKLGETRYLILDGNGLYLLVCPNGRKVWTVRYWIDKKLHQLTIGDYPMMGL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 EAR + + D + K A+ +F +EWYE +K+ A L + Sbjct: 61 AEARAERDEIKNDARY-----EKKVAAPMGLTFGEFAREWYEKRKRPKLSKSAQALYDLR 115 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P++ + +I ++++ + + ++ E + V YA+ T + Y+ Sbjct: 116 FRYLDPLM-ARPLTEITREEIVDTLHKLSEQHPAETVRRTGGIVSMVMGYALATRKIPYD 174 Query: 181 PAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 P+ L + + K P A +I +AL + S+V A +++ YT +R+ E Sbjct: 175 PSSQLGLELPIHVSKPMPAATHASEIGVLMRALESID-SLVLRSAIQLIAYTFVRSGEAC 233 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 W +D + + ++ A K + H+VP+S Q V +L TL +F RN Sbjct: 234 LARWDEIDLKEGLWSVPAEHTKTKLDHLVPLSRQAVMILDTLRRRFGGKG-HIFPSRNRG 292 Query: 300 KKPICE--NAVLLVIKQIGYEGLESG---HGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 K I + ++ ++ + E HGFR ST++NEH+W D IE QL H Sbjct: 293 KLVIPSTLSREMVKLQSLPLEARPIPTVVHGFRATASTVLNEHQWNRDVIEAQLGHFERN 352 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 R YN A+YL R MMQW+AD+LD + Sbjct: 353 KSRRAYNRAEYLPIRISMMQWYADYLDALRD 383 >UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO Length = 436 Score = 283 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 116/426 (27%), Positives = 207/426 (48%), Gaps = 44/426 (10%) Query: 3 TVKQIEAAKPKEKP--YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 T K +E KP ++ YR+ G GL L V G K W+L+Y+ + K+K L +G +P +TL Sbjct: 10 THKHVEHLKPSDRDEWYRVAGGTGLRLLVRKQGGKYWRLKYRFNKKQKTLALGVFPNVTL 69 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHK----KQVWSVGYATEL 116 ++A+D A+ ++ G+DP K ++N+NS +W E++ +VWS + + Sbjct: 70 KQAKDATIKAKAMLADGVDPGDTKSTNTNDNSLRFYAAKWLEYQSQATARVWSEDHKARV 129 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 K ++ IL +G I D+ + +I E +G E A + +F Y + Sbjct: 130 WKRLENGILKKLGDKLITDVRKEDVRRLIENVEAKGHHETAKRIADDTQRLFEYVVDQYS 189 Query: 177 AKYNPAPDLADAMKGYRKK--NFPFLPADQIPAFNKALATFS--GSIVSLIATKVLRYTA 232 + + L +K K + L +P F + LA ++ G ++ +A ++L T Sbjct: 190 LEDDVDIRLLRPVKVISKPVVHREALDIKNLPFFMQDLANYTQTGRELTALAIELLILTF 249 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R+ ELR W+ D +N++ +I A MK ++ H VP+S + ++++ + IT E + Sbjct: 250 VRSGELRGARWEEFDLDNKVWSIPAERMKMKRPHEVPLSAKALDVIKRIKRITGHY-ELL 308 Query: 293 FAGRNDKKKPICENAVLLVIKQIGY------------------------------EGLES 322 F +P+ +N + + ++GY + Sbjct: 309 FPSETKPDEPMSDNTMRQAMFKMGYFPKAKDTKDGKIAKTYLKYQDNAHYPDGRLKEKAV 368 Query: 323 GHGFRHEFSTIMNE--HEWPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADW 379 HGFR S+ ++E ++ +DAIE QLAH V+ Y+H A+Y D+R EMM+WW D+ Sbjct: 369 PHGFRTMASSTLHESDQKFRSDAIERQLAHVEQNKVKDAYSHKAEYWDERVEMMEWWGDF 428 Query: 380 LDEKVE 385 ++E+ E Sbjct: 429 VNEQRE 434 >UniRef50_C8PFJ4 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PFJ4_9PROT Length = 383 Score = 283 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 108/388 (27%), Positives = 185/388 (47%), Gaps = 22/388 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q++ KPK+KPY + DG+ L + + SG K + YK K K +T+G+ M+L Sbjct: 8 LTATQLKNLKPKDKPYFVGDGSNLLIKIMPSGAKFFIYEYKQGAKYKRVTIGRAGEMSLA 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 EAR + + + +S+ +F +++EW + K ++ S + + F+ Sbjct: 68 EARQRKSELK-----------TRVKTSDKITFREVFEEWIKTKSKI-SPKQLFWINRRFE 115 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 +LP +G ++I DI ++ + E A K +++A++ +N Sbjct: 116 SLLLPALGSMQIADIGRKDIIGALSPLLSDEKQETAKKVLGALNGFYKFALLHEYVDHNI 175 Query: 182 APDLADAMKGYRKKNFP---FLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 D+ A R++ F +I KA+ + G+ + + YTA+R + Sbjct: 176 IADIDKATLIGRRQIRHFAYFKDEAEIRNLIKAVKGYFGNERIKVCALFMLYTAVRGENA 235 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W + + + I AS MK K H V +S V +L+ + + SEF+F Sbjct: 236 RFATWDEI--KGDMWKIPASKMKNGKDHEVFLSSSVRRMLSDYRASSPLQSEFIFPSIKS 293 Query: 299 KKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMN----EHEWPADAIEVQLAHANG 353 +PI +N V +++ +G+ + HGFR FSTI + EH +D IE+ LAH Sbjct: 294 NVRPISDNTVRSMLRNLGFSNEMITPHGFRATFSTICHEKQDEHGQNSDVIELCLAHVEK 353 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 V+ YNHA+ L +R +MQWW+D+LD Sbjct: 354 NKVKDAYNHAKNLKQRAALMQWWSDFLD 381 >UniRef50_A6Q4N1 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4N1_NITSB Length = 412 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 191/406 (47%), Gaps = 25/406 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L Q+ AKPKEK Y+L DG GLY+ + +G+K+++L Y GK T+G YP ++L Sbjct: 8 LNDLQLRNAKPKEKNYKLRDGEGLYILIKPNGRKIFRLDYVYAGKRNTYTIGDYPQISLA 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSA-------IYKEWYEHKKQVWSVGYA- 113 +AR + ++ I GIDP + K+ A + + + +HK + S Sbjct: 68 QARKIKYEVKELIKNGIDPNRYKQEQKRIKELEANKKFTSFVIERFIQHKAKEVSKARLQ 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRF---------EDRGAMERANKARRRC 164 F + I P IG ++I ++ ++++++ G +A + R Sbjct: 128 KNYINTFANYITPFIGEVKIDEVTKQDIIKIVKNTYSTKLQKDNRSTGKTYKAREVYRLL 187 Query: 165 GEVFRYAIVTGRAKYNPA--PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSL 222 +F +AI + NPA D+ + ++ + ++I + + + Sbjct: 188 KSLFDFAIHNDYTQTNPAVGIDIDSLIPKHKPTRHKAVTNERIKEIYQKICSLQNPYF-R 246 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR-KIHVVPMSDQVVELLTTL 281 + + + TA+R + ++ W DF+ R+I A MK + + +P++D +V+++ Sbjct: 247 LPLQYIALTAVRFGNVANLKWDYKDFDKRVIIYPAEAMKTKNQPFRIPLTDAIVKVIQQA 306 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM----NEH 337 +I P SE VF + KPI +N + V+K E + HGFR F TI EH Sbjct: 307 KAIASPYSEIVFGSPINAHKPISDNTLRKVLKIDLNEPEQDLHGFRSSFETIALEHQKEH 366 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +AIE QL H G V Y + +L+ R+E++ WWA++L+ + Sbjct: 367 GCSFEAIEAQLHHNIGSKVTQSYLRSDFLEDRKELLNWWANYLNSQ 412 >UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3P2_BURTA Length = 409 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 122/403 (30%), Positives = 179/403 (44%), Gaps = 26/403 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMT 59 +L Q +AKP+E+ YRL DG GL L V +G K WQ RY K DG+E ++ +G YP +T Sbjct: 5 LLRDLQCRSAKPRERVYRLSDGGGLALLVKPNGLKYWQFRYMKPDGREGLIQIGPYPRIT 64 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNS--------FSAIYKEWYEHKKQVW-SV 110 L+ AR R + G DP +K F + E + W + Sbjct: 65 LEAARAARNEHRVAVQGGDDPATLRKQEKARRKIDAARALNFKQCATAFIEARSAEWVNP 124 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 + + PIIG L DI+ + +V+ E A++ R R V + Sbjct: 125 KHTQQWTNTLSTYAYPIIGALRPADIDTDLVRKVLEPIW-LTKNETASRVRGRIESVLDW 183 Query: 171 AIVTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSL 222 A V G NPA LA K + K+ LP +I AF L G+ Sbjct: 184 AKVRGLRDGENPARWSGHLDQLLAAPGKVQKPKHHAALPFTEIGAFVAELRGMVGTAAR- 242 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 A + TA+RT E+ D + ++ T+ A MK ++ H VP+S +ELL TL Sbjct: 243 -ALEFTILTAMRTGEVIGARHDEFDADAQLWTVPAERMKAKRAHRVPLSSSALELLKTLP 301 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPA 341 T S VF G ++ P+ A+L V++++ G + HGFR F E + Sbjct: 302 --TSADSPVVFEGMRARR-PLSNMAMLQVLERMK-RGALTVHGFRSTFRDWAAECTPFSN 357 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + +E+ LAHA Y DKRR +MQ WAD ++ +V Sbjct: 358 EVVEMALAHAIRDKTEAAYRRGDLFDKRRTLMQAWADHIENEV 400 >UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family n=4 Tax=Rhodobacterales RepID=Q5LS43_SILPO Length = 406 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 107/387 (27%), Positives = 180/387 (46%), Gaps = 12/387 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + KP + DG+GL+L V +G K W R I GK + +G L++L Sbjct: 21 LSAAFVRTV---TKPGKYTDGHGLFLKVDDTGAKRWVQRIVIRGKRTEIGMGSASLVSLA 77 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMF 120 EA + A RK G DP++AK+ + +F ++ ++ + W + +A + Sbjct: 78 EASETALQNRKLARAGGDPLQAKRTAQALLTFEEAARKVHKIHEPTWRNKKHAAQFISTL 137 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG L++ ++ +L V++ E A + R+R G V ++AI G N Sbjct: 138 ETYTFPRIGKLKVSEVATADVLAVLQPIWLE-KPETARRVRQRIGTVMKWAIANGWRTDN 196 Query: 181 PAPDLADAMKGY--RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA ++ A+ +++ LP D++P F + L + +A +++ TA R+ E+ Sbjct: 197 PAEAISQALPKQIDTQQHRKALPYDKVPEFLETLKASDAGDFTKLALELVVLTASRSSEV 256 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W D E I T A MK +K H VP+S + +E+L + VF G Sbjct: 257 RKAEWSEFDLEQGIWTRPAERMKSKKEHRVPLSPRALEILIEARELCTGEG-LVFPGTKI 315 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVR 357 K P+ + +L + K +GY+ HGFR F T E P D E LAH Sbjct: 316 GK-PLSDMTLLKLTKALGYD--VDVHGFRTSFKTWAQERTNTPRDVSEAALAHVLKDKAE 372 Query: 358 GIYNHAQYLDKRREMMQWWADWLDEKV 384 Y + + +KRR++M+ WA ++ + Sbjct: 373 AAYARSDFFEKRRKLMERWASYISSNL 399 >UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella RepID=A5I9N5_LEGPC Length = 407 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 110/385 (28%), Positives = 172/385 (44%), Gaps = 14/385 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 T I K KEK Y +G G + + + K W RYKI+G T+G YP M+L Sbjct: 4 FTDTYIRNLKAKEKRYEEFEGGGFGIRITPNNVKTWIYRYKINGVTTKFTLGHYPAMSLS 63 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN--NNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 A+ + + G+DP +A NN+ + WY + V + + Sbjct: 64 NAKRRFLELSQMRREGVDPKTVIQAQEEQDNNTVDKLALNWYTNYI-EKHVKRPLVIKRQ 122 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 D+DI+P++G ++ D++ + + + RGA AN+ ++F YA+ G ++ Sbjct: 123 IDNDIIPLLGKKKLDDVQTKDISDALDTIVKRGARILANRTLSSIKQMFNYAVSRGYTQF 182 Query: 180 NPAPDLADA-MKGYRKKNFPFLPADQIPAFNKALAT--FSGSIVSLIATKVLRYTALRTK 236 NPA ++ + G K L ++I A L + S + IA K+L T +RT Sbjct: 183 NPASNIRSRDIGGIEKPKERVLTLEEIKALWLFLDSDLTQMSTQTRIAIKLLLLTGVRTV 242 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 ELR W +DFE + TI A K IH V +S L L ++ S++V G Sbjct: 243 ELRLASWHEIDFEASLWTIPALHSKASIIHKVHLSKLAKSLFLQLKPLSH--SDYVLTGV 300 Query: 297 NDKKKPICENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHAN 352 D PI ENA+ IK+I + + H R F+T + E + IE L H Sbjct: 301 -DGFHPITENALPRAIKRIQEKLGIPDWTAHDLRRTFATQLGETLQIDPVVIEKCLGHKM 359 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWA 377 + YN + L +RRE ++ WA Sbjct: 360 P-RIMATYNRNEMLPQRREALERWA 383 >UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9F3_9SPHN Length = 443 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 126/419 (30%), Positives = 199/419 (47%), Gaps = 41/419 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT+ +I+ AKP+ YRL D GL+L+V +G K W+ RY+I KEK LT+G+YP M L Sbjct: 3 LTIVEIKNAKPQASDYRLADSQGLFLHVTSAGGKFWRYRYRIGPKEKTLTLGRYPEMGLV 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR+ ARK +S G DP K+ + +F + +EW ++ +WSV A Sbjct: 63 AAREAHHEARKLVSEGKDPALEKQKAKIARIEAAKITFRKLAEEWLADQEPIWSVSNAKR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + F+ D+ P+ G L I IE +L +R+ E RG++E A + R VFR A G Sbjct: 123 VRHRFERDLYPLFGNLPICQIESAPILRALRKIEARGSIETAKRVRGYIKSVFRRAKGEG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNF-----PFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 + ++ + + + F KA+ + S+ +A+++L Sbjct: 183 LVDHAILLEIDEIKDALKPARRGSKQPALTEVPETLEFQKAVDRSTSSLTVKLASRLLAL 242 Query: 231 TALRTKELRSMLWKN---VDFEN-------RIITIDASVMKGRKI--------HVVPMSD 272 T +R LR+ LW +D++N I I AS MK H VP+ Sbjct: 243 TLVRVGVLRTALWSEFEGIDWDNPDAIPNAPIWRIPASRMKLDVEDKGNPAFGHDVPLPH 302 Query: 273 QVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIG---YEGLESGHGFRHE 329 Q VE+L L +T + +F ++P+ + A+ + K++G Y+ + HG+R Sbjct: 303 QAVEVLRALRPLTGGFA-LLFPNSKSWREPMSDAALSTMYKRMGGGRYKNVMVPHGWRSS 361 Query: 330 FSTIMNEHEWPAD------AIEVQLAHANGGS--VRGIYNHAQYLDKRREMMQWWADWL 380 FSTIMNE + I++ LAH G YN ++Y R ++Q WAD + Sbjct: 362 FSTIMNERAAELERDGDRMVIDLVLAHVPPGVSASEWSYNRSRYRKPRGTLIQIWADLI 420 >UniRef50_A7JZW2 Site-specific recombinase, phage integrase family protein n=2 Tax=Vibrio sp. Ex25 RepID=A7JZW2_VIBSE Length = 471 Score = 276 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 113/424 (26%), Positives = 187/424 (44%), Gaps = 44/424 (10%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT QI+ A +K Y L DG LYL + +G K W Y K K + +G YP MT Sbjct: 29 LTNTQIKNAAKSDKEYSLSDGGNLYLRIRKNGSKNWLFIYTDFSTKKRKKMGLGSYPNMT 88 Query: 60 LQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWY------------ 101 L E R A RK ++ GIDP K + + +F AI ++ Sbjct: 89 LDEVRKVAKELRKQMTKGIDPKLFREKQKLDRLVESQLTFKAIAEKMLLKEEIQETTNRE 148 Query: 102 --------------------EHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQL 141 E + V + ++ P +G L + I + Sbjct: 149 KLIVEERERARIKGTVFGQDEIDRITNKVRSSHRKRLFLKRNLYPKLGNLPLTYITAAGV 208 Query: 142 LEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP 201 + VI + +G +E +A +V ++A+ + K N D+ D + + +P Sbjct: 209 ISVIEPMQAKGQLENVKRACCIANQVMKFAVNSNIIKSNCLADIKDNFAKSKVTHMLKVP 268 Query: 202 ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMK 261 +++ ++ V+ A ++ +T R EL +M W +++ +N++ TI A K Sbjct: 269 PNELGEVMAIMSNNQMKPVTRCAFEMQMHTMARADELAAMRWCDINVKNKLWTIPAFYTK 328 Query: 262 GRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG--RNDKKKPICENAVLLVIKQIGYEG 319 G++ H+VP++D + +L + I+ VF N K I AV + +G Sbjct: 329 GKREHLVPLNDYTLGILEFIRPISGE-HIHVFPSDKPNTKFPHISPYAVNSSLNLTSLKG 387 Query: 320 LESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD 378 HGFR ST +NEH+ + DAIE+ LAH + + R YN A YLD+R E++Q+W+D Sbjct: 388 RLVSHGFRGIASTYLNEHKQFREDAIEMCLAHLDKNTTRASYNSALYLDERYEILQFWSD 447 Query: 379 WLDE 382 ++ E Sbjct: 448 YIVE 451 >UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F7C9 Length = 374 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 104/389 (26%), Positives = 183/389 (47%), Gaps = 23/389 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMT 59 MLT +I K K R LD +GLYL V SG K W+ RYK G + +G YP ++ Sbjct: 1 MLTNTKIHRLKTPTKLERHLDSDGLYLEVTKSGSKNWRYRYKNHTGSWTMKALGSYPKIS 60 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L++AR A SF EW +K S + + Sbjct: 61 LEKARALLDDL------------EVVAEYKCISFKETASEWLVYK-GYTSYKNKHLVHRR 107 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 ++ +LP +G + I +I+P +L ++++ E +G +E A + + ++F+Y + + Sbjct: 108 IENYLLPKLGNMTIANIKPKDILPILKQIEAKGHLELARRVQNILSQIFKYGVQNLYCET 167 Query: 180 NPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSG-SIVSLIATKVLRYTALRTKE 237 NPA L K ++ P + + + + S + ++ + LR++ Sbjct: 168 NPAQPLQGCTKQPSVRHMPAIVEQSEFARLLATIDSASNLMPSVKLCLQLAPHVFLRSQS 227 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 +R +++DF+ ++ I K + H +P+++ V+E+L T +I + E++F G Sbjct: 228 IRMAKPEHIDFDRKLWVIPKD--KMGREHWIPLTEPVIEMLQT--AIAQTNGEYLFNGIK 283 Query: 298 DKKKPICENAVLLVIKQIGYEG-LESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGS 355 P+ EN + ++ +G + HGFR FST+ EH P D IE+QL H G Sbjct: 284 -PNSPLSENTLNHALRSLGVDKQTHVFHGFRSSFSTLAREHCRLPGDLIELQLGHIEGNQ 342 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKV 384 V+ Y+ +Q L++RRE+M W+ +L E Sbjct: 343 VKAAYDRSQRLEERRELMDKWSKYLAELA 371 >UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VMY9_9GAMM Length = 429 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 117/402 (29%), Positives = 199/402 (49%), Gaps = 24/402 (5%) Query: 2 LTVKQIEAA---KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYP 56 LT K+++ K R DG GLYL + + K W++ Y+ + K L +G YP Sbjct: 8 LTAKEVKNLSFDVSGAKKQRHPDGGGLYLLIDETEAKYWRMDYRRPVTQKYNTLAIGTYP 67 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSV 110 ++L++AR K +K ++ GIDP + + + + N+FS EW + +K V Sbjct: 68 TISLEQARSKRDEFKKMLANGIDPAEQRNNKKREQLQTLENTFSKFAAEWLDIRKHEGKV 127 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQL-LEVIRRFEDRGAMERANKARRRCGEVFR 169 + E + + DILP IG L + ++ QL +V +RGA+E A + + V + Sbjct: 128 DH--ETIRKLNRDILPFIGKLPVAELTTEQLERDVTDALVERGALESARRIKSIINMVLK 185 Query: 170 YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFS-----GSIVSLIA 224 + YNPAPD+ + + + ++ + + I + +A Sbjct: 186 LPLKRRIITYNPAPDII-LPQPTKGNHNAVTDEKELADLLRKTWRLTKDFPRTRIRTELA 244 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 K+ Y R E+R++LW++VDFENR ++ AS K + H+VP+S Q ++L L + Sbjct: 245 IKLSAYIYQRPGEVRTLLWESVDFENRCLSFAAS--KTNQDHIVPLSIQAYDILKELEEL 302 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM-NEHEWPADA 343 S++VF + + + + V+K++G++G + HGFR T++ E E+ D Sbjct: 303 RT-TSKYVFPSVKTSSECMSTDTLTQVLKRLGFKGKHTAHGFRATARTLLDEEIEYRTDI 361 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +E QLAH YN ++L +RREMMQ WAD+LD + Sbjct: 362 VEHQLAHKVKDPNGTAYNRTKFLRRRREMMQLWADYLDTLRQ 403 >UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NM52_9DELT Length = 406 Score = 275 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 173/395 (43%), Gaps = 21/395 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q+ +P+E + L DG GL L V SG++ W LRY+ +GK + +T+G+YP M+L Sbjct: 3 LSDAQLRKIRPRESRFELTDGKGLVLLVLPSGRRSWLLRYQFEGKPRRITLGEYPDMSLL 62 Query: 62 EARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 +AR+ + R I G+DP + K A + + S + E+++ + + G E Sbjct: 63 QARNASEATRSIIKQGLDPALKRTEEKTAHKTSPTVSDLLTEYWDMELKESPSG--KERR 120 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ + D+LP G ++ +I ++ R A N+ + +F +A G Sbjct: 121 RLVEKDVLPPWGKRKVAEITRRDAALLLDTVRAR-APVTGNRLQGVLVRMFNFAAERGVL 179 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALA----TFSGSIVSLIATKVLRYTAL 233 +++P L + R L +I ALA VS +A K++ T Sbjct: 180 EHSPLMGLRKKKEQPRS---RVLADKEIKLLWDALALDNTAMDIYRVSKLALKMILLTGQ 236 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E+ M W +D I A MK ++ H VP+ +E++ + S FVF Sbjct: 237 RPGEVCGMTWDEID--GDTWNIPAERMKSKEPHNVPLGSMALEIIEQARRYSPRGSTFVF 294 Query: 294 AGRNDKKKPICENAVLLVI----KQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 + K+ PI +++ I +++G + H R T + E E L Sbjct: 295 KSSHFKEGPITPHSLSKAILRHWQEMGVTERFTPHDLRRTLRTRLAEIGVDDVVGERVLG 354 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H G + +YN Y ++R+ + W L E V Sbjct: 355 HKLQG-IMAVYNRHSYDKEKRQALALWERKLREIV 388 >UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresistens RepID=C6RLT7_ACIRA Length = 405 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 117/404 (28%), Positives = 189/404 (46%), Gaps = 26/404 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML +I+ K K+K YR+ D GL L V +G K W+ RY+ K+LT+G YP ++L Sbjct: 1 MLNDLKIKQLKAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPKMLTIGPYPEISL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 ARDK R ++ +DPV +K + ++F +I E+ E K S + Sbjct: 61 SYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEWYE 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR-------GAMERANKARRRCGEV 167 + F DI P+IG I+++ + ++ R +A R+ C EV Sbjct: 121 NRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQICAEV 180 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 +YAI+T + +P L ++ + L + + G+ + A + Sbjct: 181 MQYAIITLKIINDPTIALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQNALRT 240 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITID----------ASVMKGRKIHVVPMSDQVVEL 277 Y+ LRT E+R V+ ++ +TI MK + HVVP+S Q++E+ Sbjct: 241 ALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLSTQMLEI 300 Query: 278 LTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH 337 + + P S ++F G +D + +N + + +G G + H FR ST +NE Sbjct: 301 IKEQLQLY-PDSIYLFPG-DDGISMLGKNTLNEALVNMGL-GHITMHDFRATASTYLNEQ 357 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + D IE+QLAH +G R YNHA +L RR+MMQ AD +D Sbjct: 358 NYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMMQHLADTID 401 >UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G0X2_ACICJ Length = 410 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 110/400 (27%), Positives = 168/400 (42%), Gaps = 25/400 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L I A + L DG GLYL V G K W RY + G++ +++G ++L Sbjct: 9 LNALAITNA---NREGNLHDGGGLYLRVRADGSKSWAFRYTMAGRKHWMSLGPLRDVSLS 65 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWS-VGYAT 114 EAR++A R + G DP+ ++ A +F A+ + E + WS +A Sbjct: 66 EAREQARQLRNLVRDGFDPLAQRRERQHLAAEQTARTFDAVAAAYVEAHRAEWSNPKHAQ 125 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + PIIG + +I + + V+ E A++ R R V YA V Sbjct: 126 QWENTLATYASPIIGKRPVSEISLLDVRRVLDPIWAE-KPETASRLRGRVEAVLAYATVH 184 Query: 175 G-RAKYNPA--PDLADAMKGYR-----KKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 G R+ NPA P D + + K+ L +PAF L VS + Sbjct: 185 GWRSGDNPARWPGFLDQIYAPKAKVRAVKHHAALDYHDMPAFMAELREREA--VSARCLE 242 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA R+ E R W +DF+ + I A MK +K H VP++ + VELL ++ + Sbjct: 243 FAILTATRSGEARGARWDEIDFDAAVWVIPAPRMKMKKEHRVPLAPRAVELLREMAGRSP 302 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIE 345 +F G KP+ + A+ + + HG R F E +P + E Sbjct: 303 RRDGLIFPG-GAPGKPMTDVALAKAV--AVLRPGFTAHGMRSSFRDWAAEMTSFPREIAE 359 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 V LAH N Y L KRR++M+ WA++ VE Sbjct: 360 VALAHINKDRTEAAYQRGDLLAKRRQLMEAWANYCAGLVE 399 >UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25017 RepID=B0U0U5_FRAP2 Length = 398 Score = 270 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 121/396 (30%), Positives = 185/396 (46%), Gaps = 15/396 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT +I+ K K R++D GLYL V +G K WQLR+ I+ K K +G YP L Sbjct: 1 MLTETKIKKIKATGKEQRVIDTLGLYLRVDKNGNKTWQLRHTINEKRKWFGLGSYPSTNL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 EAR + R+ I G D + A + + KK S + +L + Sbjct: 61 NEARKLSAELRERIDNGEDILAKPDAKKVIYVKDLVAQYIEFQKKNSSSEDFIKKLTNIS 120 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + I+P IG +IQ I+ ++V+ D+GA NK + R A + + Sbjct: 121 KNHIIPKIGNRDIQTIKRKDCIDVLEPLIDKGA--TRNKVLSALKGISRLARHNELIEND 178 Query: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF-----SGSIVSLIATKVLRYTALRT 235 P D+A A+ Y+ + P + + K L G+ +S A K+L Y LR Sbjct: 179 PTHDIARALPQYKAQPMPHISPLHNKSLLKELLLDLDNYTKGNYISRYALKLLPYIVLRP 238 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 EL S+ W D EN I I A +MK RK H+V +S Q +++ L + F + Sbjct: 239 IELVSLQWDFYDAENSRIIIPAEIMKMRKDHIVCLSRQAKQIIEELKDLQGGFKYFFPSY 298 Query: 296 RNDKKKPICENAVLLVIKQIGYEGL----ESGHGFRHEFSTIMNEHE----WPADAIEVQ 347 D I ++ I+ +GY G+ ++ HGFRH +ST ++E + + AIE+ Sbjct: 299 YKDNHDHINYESLAKAIRSMGYNGIDKPKQTLHGFRHIYSTAIHELQEQYHFSELAIELV 358 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 LAH + R YN A L +R ++MQ +ADW+D Sbjct: 359 LAHTDKNKSRASYNFADKLSERAKIMQVYADWIDNL 394 >UniRef50_D0CDZ4 DNA integration/recombination/inversion protein n=4 Tax=Acinetobacter RepID=D0CDZ4_ACIBA Length = 402 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 122/400 (30%), Positives = 196/400 (49%), Gaps = 25/400 (6%) Query: 2 LTVKQIEAAKPK-EKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLM 58 L+ Q++ AKP K Y+L DG LYL + SG K W Y GK L++G YP + Sbjct: 9 LSALQVKKAKPDPNKMYKLSDGGNLYLRIDQSGSKYWIFNYTRPFLGKRNDLSLGTYPEV 68 Query: 59 TLQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 +L++AR +K I GIDP K++K N+F I + W K+ Sbjct: 69 SLEDARTIRDKYKKLIKQGIDPAMERIETKSQKQKEAENTFRVIAELWL--HKRELEQKQ 126 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQL-LEVIRRFEDRGAMERANKARRRCGEVFRYA 171 E + + D+ P I L + L +V +R +RGA+ A + + ++F+ A Sbjct: 127 DEETIRRLNHDVYPYISELTFPQLTLEILETKVFKRIVERGALSVAKRLKSDLNQIFKSA 186 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSGSI-----VSLIAT 225 +YNP D+ + + NFP + +Q + + +S + +A Sbjct: 187 RKKKLIQYNPIEDI--ELPKPQAGNFPAVTEEQDLAPMLNKIWNYSKLYPRCLLTTQVAL 244 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 K+ T R E+R + + E R AS K +++H+VP+SDQ +L+ ++ + Sbjct: 245 KISVLTFQRPGEIRMLKKEFYYREERCFKFTAS--KTKQLHIVPLSDQAFDLIESIIDLH 302 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAI 344 P SE++F GR D K I +N + +K++GY G ++ HGFR T+++E E D I Sbjct: 303 -PYSEYIFVGR-DGKTVISDNTINSALKRLGYGGEQTAHGFRATARTMLDEILEQRVDFI 360 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E QLAH + YN ++L+ RREMMQ WAD+L+ + Sbjct: 361 EHQLAHKVKDNNGTAYNRTKFLNNRREMMQEWADYLESLL 400 >UniRef50_D1Y3S1 Site-specific recombinase, phage integrase family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3S1_9BACT Length = 433 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 111/403 (27%), Positives = 194/403 (48%), Gaps = 29/403 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKIL-TVGKYPLMTL 60 L + IE + K+ PY L DG GLYL V +G+KVW RY+ +G+ + T+G+YP + + Sbjct: 3 LNITAIERSTGKDAPYLLNDGGGLYLKVCPNGRKVWLYRYRDEGERERKVTLGEYPALDM 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEH-KKQVWSVGYATELAKM 119 AR++ R I G P + +F + + WYE KK+ + Y + + Sbjct: 63 AAARERKEATRARILRGEAP-----QDTALLTFEQVARRWYEKQKKRGLAPRYLETIRQR 117 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + ++P +G ++ I+ +L+ V+ RG +E +++ ++++YA G Sbjct: 118 LECYLIPPLGARPLEQIQRAELVAVVEGVAKRGIVESSHRVGVILSQIYQYAEDAGILPG 177 Query: 180 N---PAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 A L+ + + ++F + + + + + + G VS + + T +R+ Sbjct: 178 GGALAAASLSRVLPKTKTEHFATVSKPEDVRQVMECIRDYRGFAVSRC-LEFIALTFVRS 236 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI--TKPVSEFV- 292 E R W+ +D E R+ TI A MK R H VP+S Q + LL + + + P S Sbjct: 237 GEARRARWREIDLEARLWTIPAEHMKRRIAHKVPLSRQALALLEEMKPLSCSGPESLIFV 296 Query: 293 --FAGRNDKKKPICENAVLL----VIKQIGYEG--------LESGHGFRHEFSTIMNEHE 338 GR+ + + ++L +K+ + HG R STI+NE Sbjct: 297 SGLTGRSSSSGILTDMSLLRPFREALKRNPERAAAGLKPFPKMTVHGLRSMASTILNEER 356 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + IE+QL+H + +R IYN+++ LD RR +MQ+WADWLD Sbjct: 357 QGGELIEIQLSHLDADRIRLIYNNSELLDDRRALMQFWADWLD 399 >UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8T8_ACIBT Length = 425 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 123/419 (29%), Positives = 194/419 (46%), Gaps = 36/419 (8%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML Q++ KP++KPYR LD + LY+ V SGKKVW ++ ++ KE +T G+YP ++L Sbjct: 1 MLKDTQVKNLKPQDKPYRKLDADRLYIEVRPSGKKVWIHKFSLNKKEGSITYGEYPSISL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR R ++ GI+PV + + +F EW E K S Y Sbjct: 61 AEARYYHARDRALLAKGINPVAHRNETARLALETEQETFKKYGDEWKEKHKIDKSEDYKK 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVI-------------RRFEDRGAMERANKAR 161 + DI P+IG L +D+ +L +I ++ + A + Sbjct: 121 LIEYGLKTDIYPVIGHLHPKDVTSKHVLLIINNTMERIRTSTRSQKLKPSTGETTAIVNK 180 Query: 162 RRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVS 221 G + R I+ G A+ +P + +K + + L +I + + ++G+ + Sbjct: 181 TFIGMIMRSCIMKGLAEVDPTYAVKGVIKRQKINHARPLSMKEIRELKERIPLYNGAQTT 240 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITID----------ASVMKGRKIHVVPMS 271 A L YT LRT E+R + W VD+EN+ IT MK KIH++P+S Sbjct: 241 RNALNFLFYTMLRTIEVRRLEWAWVDWENKTITFPERTFQEIIEGKRAMKNNKIHLLPLS 300 Query: 272 DQVVELLTTLSSITKPVSEFVFAGR-----NDKKKPICENAVLLVIKQIGYEGLESGHGF 326 DQ +L +IT +FVF+ +K + + + + + + S H Sbjct: 301 DQAFSILKEQYTITAKC-QFVFSSPMQLTLGKPEKMLGRSTLNFALDALKMNDV-SPHDA 358 Query: 327 RHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 R ST +NE IE QL+H + R YNHA++L RR M+QW+AD+LD K E Sbjct: 359 RATASTYLNELGSDDRWIEKQLSHTDNDKTRATYNHAKWLRNRRSMLQWYADFLDGKAE 417 >UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDX8_ERYLH Length = 396 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 106/388 (27%), Positives = 164/388 (42%), Gaps = 18/388 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + +A K + R DGNGL L V SG K W LR + DGK + + +G + Sbjct: 15 LTAVKAKAIK---EAGRYSDGNGLQLVVKASGAKSWILRVQHDGKRRDIGLGPLSEVGPA 71 Query: 62 EARDKAWTARKDISVGIDPVKAK----KASSNNNSFSAIYKEWYEHKKQVWS-VGYATEL 116 EAR+KA ARK I G DP K + S +F + +++ K W + + Sbjct: 72 EAREKAVEARKVIRGGGDPSGLKSGSGRISGRPPTFRELATSYHDDHKSSWKNAKHREQW 131 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 D PI G + ++ +L+ ++ + E A + +R V YA G Sbjct: 132 LSTLDTYAFPIFGDQPVDRVDSRDVLDCLKPIWNA-KPETARRVLQRVLRVLNYAHGMGH 190 Query: 177 AKYN-PAPDLADAMKGYR--KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 ++ P + A+ R ++ LP ++P L SG V +A + TA Sbjct: 191 REHEAPTQSIRAALGKQRSQVRHHASLPYAEMPELMAKLEAASG--VGAMALRFAILTAA 248 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R+ E+R W +D + T+ A MK R+ H VP+S + +L + K FVF Sbjct: 249 RSGEVRGAQWNEMDLAKKTWTVPAERMKARRAHAVPLSPAALAILEDAKGLRKKPEGFVF 308 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 + + + +L I+ + + HG R F E PA A E LAH Sbjct: 309 PS--SRGIALSDMTLLKAIRAASDQN-TTVHGCRTSFRVWAAEKTSCPAAAAEAALAHTI 365 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWL 380 Y+ YLD RR++M W +L Sbjct: 366 HNKAEAAYHRTDYLDIRRQLMADWGAFL 393 >UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholderiales RepID=A1W6C2_ACISJ Length = 459 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 108/397 (27%), Positives = 172/397 (43%), Gaps = 29/397 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ KP R DGNGLYL + + K W RY E + +G + L Sbjct: 7 LTALKVTRL---SKPGRYSDGNGLYLQITKALVKSWIFRYARGTGEHFMGIGPVHTVNLA 63 Query: 62 EARDKAWTARKDISVGIDP--------VKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGY 112 EAR++A AR + G+DP KAK ++N F E+ + K+ W + + Sbjct: 64 EAREQARKARLLLRDGVDPLMHRAEALAKAKAVQASNKIFRDCMDEYIKSHKESWRNEKH 123 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + + P+ G + ++ I +L+V+ + E A++ R R V +A Sbjct: 124 QKQWEATLVEYACPVFGKMHVRLINTPLVLQVLEPIW-KTKTETASRVRERIERVLAWAT 182 Query: 173 VTG-RAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 G R NPA L K + ++ P LP + AF + LA G ++ A Sbjct: 183 TQGFREGENPARWRGHLQELLPKPSKLKKVRHHPSLPYGHVGAFVRLLAREKG--IAARA 240 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 + TA RT E+ W +D + ++ I MK K H VP+ V LL L + Sbjct: 241 LQFTILTACRTGEVIFAKWNEIDLDAKVWIIPKERMKAHKEHRVPLVRDAVTLLERLRGL 300 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADA 343 +VF G +P+ A+ V++++ + + HGFR F T E +P + Sbjct: 301 DP---VWVFPGAKQ-NRPMSNMAMANVLERMQRSDI-TVHGFRSTFRTWAAERTLYPKEM 355 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 E+ LAH G V Y ++RR +M+ WA+W Sbjct: 356 PEMALAHKVGTEVEEAYRRTDLFERRRALMRDWAEWC 392 >UniRef50_Q0BR52 DNA integration/recombination/inversion protein n=6 Tax=Alphaproteobacteria RepID=Q0BR52_GRABC Length = 380 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 110/357 (30%), Positives = 184/357 (51%), Gaps = 15/357 (4%) Query: 39 LRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYK 98 ++Y+ GKEK+L+ G YP ++L EAR + A+ + G DP A +F + Sbjct: 1 MKYRYGGKEKLLSFGAYPGVSLAEARLRRAKAKVVLGEGGDP-GAGNKPRTQMTFEEAAR 59 Query: 99 EWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERAN 158 +W+ H+ G+AT L + D P++G L + I P +L ++RR E RGA++ + Sbjct: 60 KWHGHRLDALDAGHATRLLTRLERDAFPVLGKLGLSVITPTDVLAMVRRVEARGALDVSR 119 Query: 159 KARRRCGEVFRYAIVTGRAKYNPAPDLADAMKG-YRKKNFPFLPADQIPAFNKALATFSG 217 + ++ +++R+AI G A+ +PA L +K R ++ P + ++PA +A+ + G Sbjct: 120 RLKQHVSQIYRFAIAHGWAERDPAEHLGQLLKPKPRTRHMPRIGRSELPALIRAIDGYDG 179 Query: 218 ------SIVSLIATKVLRYTALRTKELRSMLWKNV---DFENRIITIDASVMKGRKIHVV 268 V+ A T +RT E R W+ D + + + A MK + HVV Sbjct: 180 EETPRRRAVTRAALLFTLLTWVRTNETRHARWEEFEDLDGASPVWRVPAERMKMVREHVV 239 Query: 269 PMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRH 328 P++ VV LL + + ++++VF G +PI +N ++ ++GY G ++ HGFR Sbjct: 240 PLAPAVVALLQEVRVYS--LADYVFVGE-KPDQPISQNTMIYACYRMGYRGRQTVHGFRG 296 Query: 329 EFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ST NE E + D IE+ LAH VRG YN A YL RR M++ WA ++ + Sbjct: 297 LASTWANEAECYQPDWIEMALAHVERDEVRGAYNAALYLSPRRRMLEDWAGFIQSHL 353 >UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus taiwanensis RepID=B3R9I1_CUPTR Length = 412 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 100/392 (25%), Positives = 160/392 (40%), Gaps = 15/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L + IE +K + K + DG GLYL + SG K + LRY + G K+ +G +P M + Sbjct: 4 LNNRLIERSKIQPKTKFIADGEGLYLRLEPSGTKTFCLRYTVAGSRKLKVLGTFPDMDIA 63 Query: 62 EARDKAWTARKDISVGI---DPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 AR +A R+ + V K A ++ + + + EW E + + Sbjct: 64 AARKQASEMRELLEVHDSLPSASKEVDALTSPITVAQLATEW-EMRYCRQRYKRPDKELH 122 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 DI+P+IG +Q++ + VI + DRGA +AN+ +F YA+ G Sbjct: 123 YLKSDIVPVIGQELVQNVTGRHVSLVIGKIVDRGARTKANRTLCVLKSLFGYAVEHGYID 182 Query: 179 YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI--VSLIATKVLRYTALRTK 236 P G K L +I AL + + + K++ TA R Sbjct: 183 ATPVAMTKKGAGGAEKARSRVLNPKEIETLWHALDSRRRRMNWRTKALLKLILLTAQRPG 242 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG- 295 E M W++VD N I + A + K + HVV +S V +L T S +VF Sbjct: 243 ECCGMRWEDVDLANGIWFLPAELTKSDRDHVVHLSHMAVSILKMAEKETGG-SVYVFNSV 301 Query: 296 RNDKKKPICENAVLLVIKQI------GYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 + +A+ + ++ G + H R ST M E L Sbjct: 302 VKGRDVATTVDALTRAVARMLANGEFGAMKRFTPHDLRRTASTGMANAGVYPHITEKILN 361 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 H G V +YNH +YL +R+ M+ W ++ Sbjct: 362 HRMKG-VLAVYNHGEYLPERKAAMELWGRLIE 392 >UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=A4F5J8_9BACT Length = 390 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 104/378 (27%), Positives = 177/378 (46%), Gaps = 15/378 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K I+A KP EK Y++ D +GLYL V SG ++ Y+ + +++ +T+GKY +TL Sbjct: 3 LTDKAIKALKPGEKTYKVADRDGLYLSVAPSGTMSFRFNYRYNNRQQTVTLGKYGEITLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN---NNSFSAIYKEWYEHKKQVWSVGYATELAK 118 +AR+K A+ D++ GI P K K+ N NSFS ++ E + Sbjct: 63 QAREKLLKAKADLAAGISPAKKKQEIKNTLAENSFSVWLDKYTEEC--GVADSTKKMRGY 120 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D+ + P +G + + +I ++ + + A A R V+ +A + G K Sbjct: 121 AIDNYLRPALGKMSLFEITENEVRALAEDLVKQQAPSTALLCRMIIKNVYTFASMHGGPK 180 Query: 179 Y-NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +P + + K + +I + S I S A K++ T LR E Sbjct: 181 LKSPTDFVRPSSIHTFKSRTRAMSPREIGYVLNGIEQSSSDISSKSAFKLILLTLLRKSE 240 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 + + +W +D+ + I A MK ++ H V +S Q ++L L +++ S+F+F + Sbjct: 241 VINGVWSEIDWNEKTWRIPAERMKTKRPHNVYLSKQAFDILVCLRTLSTCKSDFIFPAKY 300 Query: 298 DKKKPICENAVLLVI-------KQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 KP+ + ++ K+ G E + H R ST++NE E+ +D IE LA Sbjct: 301 GLNKPMATSTPNRLLELGMANAKKAGIEIEPCTIHDLRRTASTLLNEAEFNSDWIEASLA 360 Query: 350 HANGGSVRGIYNHAQYLD 367 H G VR +YN A Y + Sbjct: 361 HVASG-VRAVYNVADYRE 377 >UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=Proteobacteria RepID=A2SG96_METPP Length = 466 Score = 265 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 111/417 (26%), Positives = 181/417 (43%), Gaps = 39/417 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 LT Q++A KP++K Y++ D +GLY YV SG + Y+I + + LT+G+Y Sbjct: 21 LTDLQLKALKPRDKAYKVSDRDGLYAYVAPSGTVSLRYDYRIGRRRETLTLGRYDATAPA 80 Query: 58 --------------MTLQEARDKAWTARKDISVGIDP----VKAKKASSNNNSFSAIYKE 99 ++L EAR A++ + G+ P + K A S+ +F + Sbjct: 81 RVPRSLDVLEYGMGLSLAEARLLLTKAKRALEQGVSPSRAKAEQKAAESDALTFGKWAER 140 Query: 100 WYEHKKQVWSVG------YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGA 153 ++E K S G + + +G L +++I P +L + + + Sbjct: 141 YFEFKGDPKSKGEQLADSTLAMRRSTYKRALEKPLGKLMLEEITPNRLAALCDDIKAQRG 200 Query: 154 MERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALA 213 A AR V+R+ G NPA + + + L ++ F AL Sbjct: 201 PAVAVHAREIVLMVYRHVQRKGIEVPNPAERVQASAIARFEPRDRALSPSELRLFLAALD 260 Query: 214 TFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQ 273 + +A + + T +R E W + F+ TI + MKG + HVV +SDQ Sbjct: 261 QCATMPTLRLAVRFVLLTGVRKGEFIGATWDEIVFDTETWTIPSRRMKGGRAHVVYLSDQ 320 Query: 274 VVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE---------SGH 324 +++LTTL S S ++ GR D PI + + VI + G++ + H Sbjct: 321 AMDILTTLRSCF-SASRYLHPGRYDSDLPISDATLNRVI-AMAIRGIQATAPEFQPFTVH 378 Query: 325 GFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 R FST +N ++ IE+ LAH + YN A+Y +RR MMQ WAD LD Sbjct: 379 DLRRTFSTSLNRAKFDERWIEMALAHVPRNRIAATYNVARYAAERRIMMQAWADMLD 435 >UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QCE7_9RHIZ Length = 418 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 104/385 (27%), Positives = 169/385 (43%), Gaps = 25/385 (6%) Query: 14 EKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 +KP DG GLYL V SG + W RY D K + L +G ++L AR A AR+ Sbjct: 17 KKPGLYPDGAGLYLRVKPSGARSWVFRYMHDRKPRYLGLGSAASVSLATARSLAGDARRQ 76 Query: 74 ISVGIDPVKAKKASSNN--------NSFSAIYKEWYEHKKQVWS-VGYATELAKMFDDDI 124 + +G DP++AK+A+ +F + + + W + + + Sbjct: 77 LDLGQDPIEAKRAAERETAADKARAMTFKECAEAYMAAHEPSWKNAKHCEQWHSTLRRYL 136 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG--------R 176 P GG+ + + + E I+ E A++ R R V +A G R Sbjct: 137 YPKFGGIAVALVTTEMVFEAIQPIW-HSMPETASRVRGRIEVVIDWAKARGAFSGENPAR 195 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 + + A L K + ++ +P D +PA L +G ++ A + TA RT Sbjct: 196 WRGHLANLLPKPSKVAKVEHHAAMPFDDLPALMSELRAATG--LTSRALEFTILTAARTT 253 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E W D E +I T+ A MK K H VP+S + VE++ L ++ +EFVF G Sbjct: 254 EALGAQWSEFDLEKKIWTVPAVRMKAGKDHRVPLSTRAVEIIKELETV--KRNEFVFPGE 311 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGS 355 + + ++L++++++ G + HGFR F E +P +E+ LAHA Sbjct: 312 K-PGRHLSNMSMLMLLRRLK-RGELTVHGFRSTFRDWAAETTSFPNFIVEMALAHAIESK 369 Query: 356 VRGIYNHAQYLDKRREMMQWWADWL 380 V G Y L+KRR +M W + Sbjct: 370 VEGAYRRGDLLEKRRALMVAWMQYC 394 >UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0I233_HAES1 Length = 434 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 169/388 (43%), Gaps = 26/388 (6%) Query: 17 YRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 Y L DGNGL+L V +SG K+W+ Y K +++GKYP ++L +AR + Sbjct: 42 YPLRDGNGLFLSVEISGSKIWRFNYYKPYTKKRTEISIGKYPEISLLQARKIRDEYLALL 101 Query: 75 SVGIDPVKAKKASSN-----NNSFSAIYKEWYEHKKQVW--SVGYATELAKMFDDDILPI 127 + IDP + N N+F + +WY + + + I P Sbjct: 102 AQNIDPKTHRDQKQNTQALERNTFKYVCAKWYAEIYPTKAPNEDTRARNWQRLERHIFPK 161 Query: 128 IGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLAD 187 + + + +I P L++V R GA +K R Y I G + + D Sbjct: 162 LAEIPLSEITPRLLIDVYREI---GASNTLDKLHRLVKATLDYGIKLGIIEGHNCNLAKD 218 Query: 188 AMKGYRKKNFPFLPADQIPAFNKALATF----SGSIVSLIATKVLRYTALRTKELRSMLW 243 KN P + ++P KA+ T +L A + T LR KEL + W Sbjct: 219 DFIAPLAKNHPAITPAELPELLKAINTAFKEGKLEFNTLFAFNLTLLTGLRQKELTRIEW 278 Query: 244 KNVDFENRIITIDASVMKGR-------KIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 +D N+++ I + MK K H++P+S Q+++L+ T+ S ++F Sbjct: 279 AFIDDGNKLLIIPSENMKQTRKLREQPKDHIIPLSSQMIKLIGTIRQFNG-SSPYLFPRV 337 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH--ANGG 354 ++ K I + V ++ GY + HG R F + +++ + E+ +AH G Sbjct: 338 RNRNKTIGLDTVSNALRDNGYRDKQDAHGLRVVFRSYLSQIGFSVVVGELAIAHNSTGKG 397 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDE 382 ++ IY+ YL++R++ Q W D+ ++ Sbjct: 398 KIQAIYDRYDYLEERKQAYQAWGDYCEK 425 >UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepID=B7UP04_ECO27 Length = 405 Score = 263 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 169/399 (42%), Gaps = 21/399 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPV-SGKKVWQLRY--KIDGKEKILTVGKYPL 57 +LT + KP +KP GL L+ G+ W RY + K + +G YP Sbjct: 3 VLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPE 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNN---NSFSAIYKEWYEHKKQVW-SVGYA 113 +++ EA A R+ ++ G DP++ KKA S +F+ + + W + + Sbjct: 63 VSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPKHV 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + ++ P +G + I + E +R E A++ ++R V ++ Sbjct: 123 RQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVW-LTLSETASRVKQRIHVVMQWGWA 181 Query: 174 TGRAKYNPAPDLADAMKGY---RKKNFPFLPADQIPAF-NKALATFSGSIVSLIATKVLR 229 G NP + + R ++ P +P Q+P F ++ T V+ ++ Sbjct: 182 HGFCVANPVDVVDHLLPQKTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMVI 241 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 TA R+ E R M W +DF RI TI A MK R H VP+S Q + +L + + Sbjct: 242 LTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAMHILENIRGLH---D 298 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIG-----YEGLESGHGFRHEFSTIMNEHEWPADAI 344 E VF K++ + + + +++ + + HGFR F +E + D Sbjct: 299 ELVFPSPR-KQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLA 357 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 E LAH V Y+ L++R MMQ WAD++ + Sbjct: 358 ERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ 396 >UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V760_9PROT Length = 384 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 182/392 (46%), Gaps = 17/392 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 +LT I+ AKP+EKPY + D GL++++ V G K ++ + K+DGK KI+ +G + M Sbjct: 3 ILTTVAIKNAKPEEKPYLIYDSKERGLHVHISVVGTKTFRFKTKLDGKAKIIKLGDFKHM 62 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW--SVGYATEL 116 TL++AR +A+ I GIDP + +F+ + KE+ K+ + + G + Sbjct: 63 TLEQARQRAFDLNVQIQNGIDP--TVQIVPEFKTFAEVSKEFVAWKRDEFGRAEGTIRKY 120 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D+D+LP I++I + + VI + R + A K V +AI G Sbjct: 121 QECLDNDLLPAFANTSIKEIHTKESVAVIEKINAR-SNSLAIKNIEMLNMVVMFAIQRGY 179 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 +L+ + K P + + + + + + A + + LR Sbjct: 180 RDSYTQLNLSGLI--KEKPVKPKIMPSSLKDTFDKIDQYP-TFIMRCAITIQFHVFLRGS 236 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+ W+ +DFE + + A MK ++ H+VP++ Q +ELLT L S T S F+F Sbjct: 237 EIMGGRWEEIDFEKKQWVVPADRMKMKRTHIVPLTSQTIELLTKLKSATGD-SAFLFPSS 295 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 + I +A+ + + HG R T M +++ +E QL+H + Sbjct: 296 KSV-EHIGRDALSKAFRAADLK--IVPHGCRTLAGTWMRNNKYLPHLVETQLSHCESNQI 352 Query: 357 RGIYN---HAQYLDKRREMMQWWADWLDEKVE 385 Y H YLD+RR MMQ W++ L E + Sbjct: 353 AAAYQTEPHMLYLDERRGMMQEWSNHLSESAK 384 >UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU Length = 419 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 104/394 (26%), Positives = 167/394 (42%), Gaps = 26/394 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K ++ ++P DG GL L V + +K W RY + + L +G +P ++L+ Sbjct: 4 LTPKFVKDV---DQPGSYQDGRGLILRVSATLRKSWVFRYMLAKQRHDLALGTFPALSLR 60 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN--------NSFSAIYKEWYEHKKQVWSVGYA 113 +AR +A R DI+ G+DP + ++F A + + WS + Sbjct: 61 DARLEADKYRLDIARGVDPAAERAKVKAAKASRTTTSHTFRASAERYIRTHSSSWSKKHH 120 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P IGG I +++ +L+V+ + AN+ R R V A Sbjct: 121 QQWQNSLTKHVYPAIGGFRIAEVDTDDILDVLTPIWSK-IPVTANRVRNRIELVLDAAKA 179 Query: 174 TGRAK-YNPAPDLADAMKGYRKKNFPFLP-----ADQIPAFNKALATFSGSIVSLIATKV 227 + NPA K K++ +P + L + GS A + Sbjct: 180 LKLRQGENPARWRGHLDKLLPKQSHTVVPFPSPTPLRTAELLARLDSLDGSAAR--AVEF 237 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 TA R +E+ W +D+E +I I A MK K H VP+++Q++E+L + K Sbjct: 238 AILTATRNQEVSGAQWPEIDWEEKIWYIPAERMKAGKAHRVPLTEQMLEVLRQ--QVGKH 295 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPADAIEV 346 PI NA+ V+ Q+ +G+ HGFR F T E + + E+ Sbjct: 296 DKWIFLNSWRTG--PIPGNAMARVLDQLQVDGV-VPHGFRSTFRTWAAEETDHQREVCEM 352 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 LAH V YN LDKRR +M+ W D+L Sbjct: 353 ALAHTLNSKVEAAYNRGDLLDKRRALMKDWGDFL 386 >UniRef50_B5J5X2 Site-specific recombinase, phage integrase family protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J5X2_9RHOB Length = 383 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 173/375 (46%), Gaps = 17/375 (4%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVG------- 77 ++L V SG+KV++L Y++ G ++ +G YP +L +AR KA R D++ Sbjct: 1 MFLEVLPSGRKVFRLAYRLAGNQRTKLIGDYPATSLADARLKASAFRLDLNSSDPEIVEV 60 Query: 78 -IDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDI---LPIIGGLEI 133 P + + + Y +Q + A + + + I + +G + Sbjct: 61 ATRPRQTVTTKKRQTTTWKEVADGYLMMRQQSNP--APKTLRKLNYQIGVTVDALGNPRV 118 Query: 134 QDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYR 193 +I +L+V+ G +E A++ R R ++FRYA G ++PA DAM R Sbjct: 119 DEITAQDILDVVNPIASSGRVETAHEIRARFSQIFRYAGARGLVTHDPAAFTIDAMIKRR 178 Query: 194 KKNFPFLP-ADQIPAFNKALATF-SGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENR 251 + F + + A+ ++ + + A + Y R ELR M W +D+++ Sbjct: 179 RGEFAGITDPAAVGKLLHAIESYREANPIVGAALMLSAYLFPRNTELRGMRWDEIDWDSL 238 Query: 252 IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLV 311 + MK + H+VP+ Q ++LL L SE V D K+ + + Sbjct: 239 RWEVPGQRMKMNRDHIVPLPSQAIDLLRFLQKY-DFGSELVLPSPRDPKRMVSDMTFNAA 297 Query: 312 IKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRR 370 ++++G++ HGFR ST +NE W D IE QLAH VR YN AQYLD R Sbjct: 298 LRRMGFKSDRHVHHGFRTTASTNLNEMGWNYDWIERQLAHVPANKVRSSYNKAQYLDGRT 357 Query: 371 EMMQWWADWLDEKVE 385 EMM+ +ADWLD + + Sbjct: 358 EMMRAYADWLDARRQ 372 >UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria RepID=D1D4Y4_NEIGO Length = 406 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 96/389 (24%), Positives = 180/389 (46%), Gaps = 20/389 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q++ AKP++K Y+L DG GL L+V +G++ W+L + DG+++ +++G+YP +L Sbjct: 16 LSANQVKNAKPRDKLYKLSDGGGLALWVYPTGRRSWKLSFMQDGRQQTISLGRYPDFSLA 75 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 EAR+ R+ + G + V K + +F + ++W+ + S YA ++ + F+ Sbjct: 76 EAREWREEVRRKRAHGENVVNKK--VRADFAFEKVARDWFVRWSKGRSEKYAGQVMRNFE 133 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 + P IG L+I+ + ++ +R E RG ++ K + VF +A+ +G NP Sbjct: 134 RWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKMVFAFAVGSGMMDINP 193 Query: 182 APDL-ADAMKGYRKKNFPFLPADQIPAFNKALATF----------SGSIVSLIATKVLRY 230 + + + + KN L ++P L V+ L Sbjct: 194 VAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRVHIHPVTRFCIYWLLL 253 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T R +E M W +D E + I A K R+ H VP+S + +L + Sbjct: 254 TMTRIREAALMEWSELDGE--VWRIPAERKKERRGHDVPLSRAMRWVLDQARGLN-VNGR 310 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLA 349 FVF N + I + + + +++ G + + HG R T + E + D E LA Sbjct: 311 FVFESVNFQG-HINKESPHVAMRRSGLD--TTAHGLRSLARTYLREVLKVYNDVAEKLLA 367 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWAD 378 H+ G + YN ++ ++R++ + W + Sbjct: 368 HSLGTRTQTAYNRSELWEERKDAPERWGN 396 >UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCI3_9SPHN Length = 325 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 167/324 (51%), Gaps = 8/324 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ I+AAK ++KPY+L D +GLYL V +G + W++ Y+ GK+K LT G++P + L Sbjct: 3 LSAVAIKAAKSRDKPYKLADRDGLYLEVSPTGARSWRMNYRYLGKQKTLTFGRWPAVGLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K AR+ ++ G DP + K + +SF A+ +E+ ++ + Sbjct: 63 DARKKCDAAREVLARGDDPGEQAKLERIAASVASASSFEAVAEEYLAKIEKEGRSSVTMK 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + I IG I I +LL +R+ E +G E A + R C ++FRYAI TG Sbjct: 123 KKRWLIGFIDKSIGKRPISAISAPELLLTLRKMEKKGKYETARRLRSTCSQIFRYAIATG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPA-DQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA+ + DL A+ + + P + ++ +++ +F G + IA K++ + +R Sbjct: 183 RAERDVTVDLRGALIVPKAVHRPAITDASKVGGLLRSIESFDGHPTTQIALKLVPHVFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W D + + TI A K R+ H +P+S Q +E++ ++ S F+F Sbjct: 243 PGELRHAEWTEFDLDANVWTIPAEKTKMRRPHAIPLSRQTLEIIASI-EHDADYSRFLFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYE 318 ++P+ EN + ++++GY Sbjct: 302 SLRSVQRPMSENTINAALRRMGYA 325 >UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWJ5_ARCB4 Length = 410 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 101/402 (25%), Positives = 191/402 (47%), Gaps = 26/402 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L Q++ AKP ++ Y L DG GLYL V + K+W+ RY +GK K + YP ++L+ Sbjct: 7 LQDIQVKQAKPTKETYYLFDGLGLYLEVTPNNAKIWKFRYTYNGKRKKTSFQSYPKVSLK 66 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K + + GIDP+ K K + +SF I+ +W E +K + Sbjct: 67 QARKKRDNYNELLFDGIDPIEYYKEQKELKQIEDTSSFKNIFTQWLEMEKSKSGLAQYQW 126 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 ++DILP IG +I+DI+ + V+ +++ A A+K ++ YA G Sbjct: 127 KKTRIENDILPFIGNKKIKDIKIQDVTNVLIE-KNKTAPVTASKLFGYLKSIYSYAKTKG 185 Query: 176 RAKYNPAPDLAD--AMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTA 232 + N D+ + + ++P + + + ++ + G A K++ + Sbjct: 186 YIEINLLSDINKTHIISSSQVISYPKITEKENLKDLVNSIYNYQGFYSVKNALKLVLHLP 245 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVELLTTLSSITKPV 288 LR L ++ W N+DF+N+++ I MK + +P++D+V+ +L S T Sbjct: 246 LRAGNLCNLQWSNIDFDNKLLIISRDEMKVKDKNFDDFRMPLTDEVINILNEQKSYTGYQ 305 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEG-----LESGHGFRHEFSTIMNEHE----W 339 +F+F G N++ PI + +K +G++ + HGFR F ++++ + + Sbjct: 306 -KFIFLGTNNRT-PINVESPNKALKIMGFDDEVNGRKITLHGFRGTFRSLIDTLDIDSNF 363 Query: 340 PADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWL 380 + E L H V Y H + Y+++ +M +W+D++ Sbjct: 364 SFETKERALDHHEKSKVVRAYTHKSDYINQLIPLMNFWSDYI 405 >UniRef50_B5J7B6 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=B5J7B6_9RHOB Length = 446 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 103/414 (24%), Positives = 174/414 (42%), Gaps = 38/414 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYL--YVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 L+ + + P + DG GL L V SG + W R I G+ + + +G P++T Sbjct: 28 LSAAFVRTVR---DPGKYHDGGGLGLMLRVEPSGSRRWVQRIVISGRRREIGLGTPPVVT 84 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAK 118 L AR+ A + + G DPV ++ + +F+ + K + S + + Sbjct: 85 LAAAREAALDNMRTVQAGNDPVAIRRNARTFLTFATAAEHAIAAKSSEFRSDKHRKQWRS 144 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG--- 175 D LPI+G L + + +L V+ E A++ R R + +A G Sbjct: 145 TLDTYALPILGALPVGKVNTADVLRVLEPIWTE-KTETASRLRGRIEAILSWATAAGHRE 203 Query: 176 -----RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 R K N + L + + + P L + + + AL G V+ A + L Sbjct: 204 GENAARWKGNLSEMLPKPQRVAKTVHHPALASSDVSVWYAALRGRDG--VAARALEFLAL 261 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 TA R+ E+R M W VD + T+ A MK + H VP+S LL +++ P ++ Sbjct: 262 TAARSGEVRGMTWAEVDLTTGVWTVPADRMKASREHRVPLSAPAFSLLESMA--VAPDAD 319 Query: 291 FVFAGRNDKKKP----ICENAVLLVIKQIGYEGLES---------------GHGFRHEFS 331 GR P + + ++ V++++ ++ HG R F Sbjct: 320 PTDCGRPVFSAPRGGVLSDMSLSAVMRRMQQAEIDVGCAGWLDRASGRPAVPHGLRSTFR 379 Query: 332 TIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 E +P D E+ LAH G +V Y + L++RR MM W+D+LD +VE Sbjct: 380 DWTAECGYPRDMAEMALAHDVGSAVERAYRRSDMLERRRAMMAAWSDFLDGRVE 433 >UniRef50_Q7MPT5 Site-specific recombinase, phage integrase family n=14 Tax=Gammaproteobacteria RepID=Q7MPT5_VIBVY Length = 434 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 96/404 (23%), Positives = 156/404 (38%), Gaps = 25/404 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT KQ+ A K P + DG GLY V G W +RY + T+G++PLM+L Sbjct: 22 LTAKQV-IAYSKADPKKYSDGEGLYFCVRKQGSPYWMIRYTTAKGRREATLGQFPLMSLA 80 Query: 62 EARDKAWTARKDISVGIDPV--KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 +AR A RK++ GIDP+ K K + + ++ +WY + + ++ Sbjct: 81 DARIAAAYFRKEVRDGIDPLLEKQKIELPDIETVDQLFHDWYRT-DLSRRLKHPKIPYRV 139 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + DI P+IG I ++ + EV+ R + AN ++FR+AI Sbjct: 140 YTKDISPVIGIKCIAEVTARDVREVLERIRESNRPTIANDTLMYMKQLFRHAIKLDLTLN 199 Query: 180 NPAPDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVS--LIATKVLRYTALRTK 236 NPA D G L ++I T S +A + +R Sbjct: 200 NPAAAFTVDDAGGVESSKDRMLSKEEIHYAFSVFHTHINSFGRDNYLACCLFLVLGVRKS 259 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 EL +W+ +D + + K +P+ Q + L I S +VF R Sbjct: 260 ELCEAMWREMDLTTGVWDLPKERSKTGVPISIPLPRQAIAWFNELQ-IRACGSPYVFPAR 318 Query: 297 NDKKKP-ICENAVLLVI---------------KQIGYEGLESGHGFRHEFSTIMNEHEWP 340 +P + + + I ++G + H R F ++ Sbjct: 319 RASHRPHMGPDTLNRAISKLFGREPGRKKQPPNKMGKLEHFTVHDLRRTFRSLAASLGIA 378 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + E L H G V GIY+ Y ++RR Q AD ++ V Sbjct: 379 GNVAERCLNHKLKG-VEGIYDRHDYFEERRIAHQTVADVVEPLV 421 >UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JWM6_PASHA Length = 404 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 168/396 (42%), Gaps = 18/396 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY---KIDGKEKILTVGKYPLM 58 L+ ++ K + D NGL++ KVW Y K + +G YP M Sbjct: 8 LSDTLLKNLKYSPNAKPIADSNGLFILAQKK-AKVWIYSYISPKTGKRSTKNRIGSYPQM 66 Query: 59 TLQEARDKAWTARKDISVGIDPVKA-----KKASSNNNSFSAIYKEWYEHK--KQVWSVG 111 +L EAR K + G+DP + ++A S + +W + K K Sbjct: 67 SLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEKQESIQSFAYKWADWKLSKGKCKPK 126 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + + ++ + P G ++D + + DR + ++ E+ YA Sbjct: 127 TMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRLTDL-DRIMPDTLHRIAGNLIEILDYA 185 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 ++ GR +NP + A + P + +++ F + L + + + + Sbjct: 186 VLCGRINFNPISVIKKAFSSVSTTHQPAIMPEELAEFMQDLQKSNRTPQIKLLVEWQLLN 245 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRK-IHVVPMSDQVVELLTTLSSITKPVSE 290 LR E ++ W ++D+E + + I A MKG K H VP++ Q + +L + + Sbjct: 246 ILRPFEAVAVQWSDIDWETKTLNIPADRMKGGKNPHSVPLTKQAIAILEEMKKYNGH-HK 304 Query: 291 FVFAGRNDKKKPICENAVLLVIKQI---GYEGLESGHGFRHEFSTIMNEH-EWPADAIEV 346 +F R D+ KP V IK++ Y+GL HG R ST ++E IE Sbjct: 305 HIFTHRTDRNKPANSQTVNNAIKRLSGGKYKGLLVAHGLRSIASTYLHERFTTETLVIEA 364 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 L+H N +V Y+ +LD+RR +MQ WAD++++ Sbjct: 365 CLSHTNKDTVMSAYHRKNWLDRRRGIMQEWADFVEQ 400 >UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanella RepID=A4Y9I4_SHEPC Length = 432 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 101/410 (24%), Positives = 175/410 (42%), Gaps = 33/410 (8%) Query: 3 TVKQIEA-AKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTV--GKYPLMT 59 KQI++ K KE R G+GLY+ V G W++RY ++GK + + G YP M+ Sbjct: 12 NDKQIKSFLKSKE-LGRKAVGDGLYIRVQTEGVAYWEVRYSVNGKRRSMVPNGGVYPAMS 70 Query: 60 LQEARDKAWTARKDISVGIDPV--KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 L EA+ +A + GIDP+ + ++ + + ++ +WY+ + + Sbjct: 71 LVEAKAEAAKVKLLAKQGIDPLAERERQQEITIKTVNDLFDDWYQCTAP--RLKHPEIPM 128 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 +M+ DI P IG L++ D+ + ++ + ANK C ++F +A A Sbjct: 129 RMYTKDIKPAIGQLKVTDVNARDIRAILHKVVKSNRPTVANKTLLFCKQLFNHACKLDVA 188 Query: 178 KYNPAPDLADAMKG-YRKKNFPFLPADQIPAFNKALATFSG--SIVSLIATKVLRYTALR 234 NPA A G K L ++I A L S + +A +L +R Sbjct: 189 SGNPAAAFNTADAGGLEKNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAVALLLCLGVR 248 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 EL + W DF+ ++ + K +P+S+ V+E L L I SE+VF Sbjct: 249 KGELIAAKWSEFDFDQQVWRMPKERSKTGVGITIPLSEFVIEWLKELK-IIACGSEYVFP 307 Query: 295 GR--NDKKKPICENAVLLVIKQ----------------IGYEGLE--SGHGFRHEFSTIM 334 R + +++ I + + + + +G G+E + H R T++ Sbjct: 308 ARKASKRREYIANDTLNHALAKLFGQKHDSNKQPFENLLGKAGVEHFTVHDLRRTCRTLL 367 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + P E L H G + G YNH YL++RRE + A + + Sbjct: 368 ASLKVPPHIAERCLNHKLKG-IEGTYNHHDYLEERREALDKLAALISPII 416 >UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=C7JAN4_ACEP3 Length = 404 Score = 255 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 102/396 (25%), Positives = 162/396 (40%), Gaps = 28/396 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT +Q+ A K L DG GL+L V K W R+ I + + +G ++ Sbjct: 9 LTARQVSALK----GGSLCDGGGLWL-VAQGAAKSWFFRFTSPISNTRREMGLGSVHDLS 63 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVW-SVGY 112 L E R KA AR ++ G+DP+ ++ +FS I K + + W + Sbjct: 64 LAEVRRKATEARHLVAAGLDPIDERRKLKAQRKKESGLTFSDIAKRYVKEMAPGWRNARS 123 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 +T + + P +GG + +IE +L V+R + E A++ R R + +A Sbjct: 124 STVWTSSLERHVFPAMGGKLVSEIETEDVLAVLRPIW-KTTTETADRVRGRIERILDFAR 182 Query: 173 VTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 G NPA L + ++ P + I LA G +S A Sbjct: 183 THGWRDGENPARWRGHLANILPKPSAVAKARHLPAVNRKDIGKVMAKLAQAEG--ISPKA 240 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 + TA R+ E+R +W +D +I TI A MK K H VP+S + +L + Sbjct: 241 VRFACLTAARSGEVRQAVWSEIDLVTKIWTIPAHKMKAGKEHRVPLSAGAIAVLQEVLPF 300 Query: 285 T-KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPAD 342 K + VF G + +P+ + + + + HG R F E ++P + Sbjct: 301 RDKRAGDLVFPG-GKRGRPLSDVVLSKALHSAAGTKDVTVHGLRSTFRDWAAEETDYPGE 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD 378 E+ LAH V Y +KRREMM W D Sbjct: 360 VAEMALAHTISDKVEAAYRRGDLFNKRREMMTAWND 395 >UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria RepID=B0SXU9_CAUSK Length = 399 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 161/385 (41%), Gaps = 20/385 (5%) Query: 5 KQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEAR 64 I+AAK K P R DG GLYL + G++ W Y K L +G ++L AR Sbjct: 9 TAIQAAKLK-VPGRHSDGGGLYLSIDDGGRRRWVFIYTRGAKRTELGLGGGRDLSLANAR 67 Query: 65 DKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDD 123 +A R ++ G+DP + +F A + E + W + +A + Sbjct: 68 VEAAAFRTMLADGLDPKVERARDDQAQTFGACADAYVEAMRPSWRNEKHAAQWKMTLTKY 127 Query: 124 ILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPA 182 PI ++++ +L+V++ R E A + R R V A G R NPA Sbjct: 128 AAPI-RERPVKELTTQDILDVLQPLWTR-TPETAERLRGRMENVLDAAKAKGLRTGENPA 185 Query: 183 ------PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 L + + + L D IP F L T S V+ A + TA R+ Sbjct: 186 RWRGHLNQLLPKRQRLARGHHAALAYDLIPDFMANLRTR--SAVAARALEFAILTASRSG 243 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+ W D + ++ I A+ MK + H VP+S + +E+ +VFAG Sbjct: 244 EVLGATWNEFDLDKKVWVIPATRMKAGREHRVPLSARAMEIAEAQFD---DGKGYVFAGP 300 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGS 355 K P+ A+ ++++++ + + HGFR F +E + + E+ LAH Sbjct: 301 KLGK-PLSSMAMAMLLRRM--KSDITVHGFRSSFRDWASETTGFSHEVCEMALAHTIANK 357 Query: 356 VRGIYNHAQYLDKRREMMQWWADWL 380 Y DKRR++M+ WA + Sbjct: 358 AEAAYRRGDLFDKRRKLMEAWAGYC 382 >UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobacteriaceae RepID=B7UT12_ECO27 Length = 411 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 113/395 (28%), Positives = 164/395 (41%), Gaps = 37/395 (9%) Query: 14 EKPYRLLDGNGLYLYVPVSGKKVWQLRY----------KIDGKEKILTVGKYPLMTLQEA 63 E Y + + +GLYL + + + W L + + + +G YP ++L EA Sbjct: 22 EGMYAVGNVDGLYLRIR-NQSRAWVLCVAMGTRINNLGRTVPRRLNMGLGPYPEVSLAEA 80 Query: 64 RDKAWTARKDISVGIDPVKAKKAS--------SNNNSFSAIYKEWYEHKKQV-WSVGYAT 114 RDKA RK I GI+P++ K +F+ +E E K + + Sbjct: 81 RDKARELRKQIRNGINPLQEKHEQKARQEILARKKKTFAECCEEVLEVKDSEMKNKKHLA 140 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + + P IG + +I + LL ++ E A++ R R V YA Sbjct: 141 QWRSTLETYAYPFIGKKAVSEITKVDLLAILEPIW-LTKNETASRLRGRIETVIDYAKAK 199 Query: 175 GRAK-YNPA-------PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 + NPA P L K K+ LP +QI +F K L SG VS A + Sbjct: 200 EYFEGDNPAAWKGMLKPLLPQPSKVQITKHHAALPYNQIGSFMKELRERSG--VSPRALE 257 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA R+ E+R W +D E + TI AS MK K H VP+SD V LL L Sbjct: 258 FAILTAARSGEIRGAEWSEIDLEGKTWTIPASRMKAAKEHRVPLSDAAVALLKALPRFKG 317 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIE 345 FVF K + + A+L V+K++GY L + HGFR F E +P + IE Sbjct: 318 IS--FVFPATR--KGQLSDTALLAVLKRMGYTDL-TQHGFRSTFRDWAGETTNYPREVIE 372 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 LAH Y KR +M W+ + Sbjct: 373 HALAHQLADKAEAAYQRGTLWPKRVALMDEWSGFC 407 >UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae RepID=A9HQA6_9RHOB Length = 398 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 94/394 (23%), Positives = 175/394 (44%), Gaps = 29/394 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILT--------VG 53 LT K +E R DGNGLYL V SG + W +R + G++ +G Sbjct: 7 LTKKLVENLGAG----RHGDGNGLYLVVDPSGARRWIVRVVVKGQKNKKGAPLRTDFGLG 62 Query: 54 KYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGY 112 ++T+ +AR++A R+ G++P A +F K+ + + W + Sbjct: 63 GADIVTINQARERALEYRRMAKTGLNP--RFNAKREIPTFEEFAKQVHIDRLPTWKNAKH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + D P IG + I + +++ + E A + +R V A Sbjct: 121 GQQWINTLRDYAFPKIGRMPIDSVNQPEVMMCLAPIWTA-KHETAKRLAQRIKTVLDVAR 179 Query: 173 VTG-RAKYNPAPDLADAMKGYRKK----NFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 G R NP + +A + K + + +PAF L + +S A Sbjct: 180 SKGFRDGENPVTAIKEAHALPKVKGKVNHHKAMHWRDVPAFYSDLRGRNA--MSAKALMF 237 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 T RT E+ W +D + R+ T A MK + H VP++D+++ ++ L ++ Sbjct: 238 TCLTGSRTGEVLGTQWGEIDLDARVWTCPAIRMKTGEDHRVPLTDEMLSIIEPLRAM--- 294 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEV 346 S++VF G+ + +P+ ++L++++++ EG+ + HGFR F ++ P + E+ Sbjct: 295 QSDYVFEGQK-RHRPLSNMSMLMLLRRMQVEGV-TVHGFRSTFRDWASDVANAPREVSEM 352 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 L+H G V Y + LD+RR +M+ W++++ Sbjct: 353 SLSHLVGSDVERAYARSDLLDRRRALMERWSNYV 386 >UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis RepID=Q1GUV7_SPHAL Length = 403 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 162/395 (41%), Gaps = 25/395 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++AA P DG+GL+L V +G W LR + DGK + + +G L+TL Sbjct: 4 LTAVAVKAALAN--PGTYQDGDGLFLKVGKTGAASWLLRLQRDGKRQDIGLGSAKLVTLA 61 Query: 62 EARDKAWTARKDISVGIDPV--KAKKASSNNNSFSAIYKEWYEHKKQVWSVG-YATELAK 118 EAR KA RK + V V + K + +F +++ + W Y + Sbjct: 62 EARAKAAELRKAVKVEKRDVLTERKDEEAAKVTFREAATQYHSENEAGWKSDVYGRQWLA 121 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 ++ P +G + I ++ V+ E A + R R V Y+ G Sbjct: 122 SLENYAFPKLGDMTTGGITAADIISVLTPIWQE-IPETARQVRNRICAVLDYSHAKGWRS 180 Query: 179 YNPAPDLADAMKG-------YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + G + N +P +P F AL S +A +L T Sbjct: 181 SEAPSGNSSLKAGRGLPRQIKKPANRKAMPYVAVPPFLTALRR--KPSYSRLALDLLILT 238 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R++E+R W D + R+ TI A MK + H+VP+S+ + +L ++ +E Sbjct: 239 GVRSQEVRLAKWDEFDLDQRLWTIPAEHMKRSRAHIVPLSEAALAVLVKADAMRLEGAEV 298 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF G K + +L V++ + + HGFR F+ +P +E LAH Sbjct: 299 VFPGMTGKA--MSNMTLLKVMRDM--QEPFHVHGFRSSFTDWAANEGFPNAVVEAALAHK 354 Query: 352 NGGSVRGIYNHAQYL------DKRREMMQWWADWL 380 +V+ Y YL R ++M+ W ++ Sbjct: 355 TPDAVQAAYRRTTYLGTPDNPGARVKLMEAWGNYC 389 >UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12EX0_POLSJ Length = 410 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 108/389 (27%), Positives = 168/389 (43%), Gaps = 29/389 (7%) Query: 16 PYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 P R G GL+L+V SG + W LR + K + +G YP +TL ARD A AR Sbjct: 19 PGRYAVGGVAGLHLWVKPSGNRSWILRVLVGAIRKDIGLGGYPDVTLAGARDAARRARDQ 78 Query: 74 ISVGIDPVKAKKA--------SSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDI 124 I G++P++ ++ + +F + E + W + + + + Sbjct: 79 ILQGVNPIEQRRQAKALLMADQAKAKTFKDCSAAFIEDRGDEWRNPKHRQQWHNTLETYA 138 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPAP 183 P IGGL ++DI +LEV+R + E A + R R V +A V G RA NPA Sbjct: 139 FPFIGGLFVRDISLAHVLEVLRPIW-KTKTETAARVRGRIETVLDWAAVRGYRAGDNPAR 197 Query: 184 D-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 L K + ++ + D + F A+ G A + TA R+ Sbjct: 198 WKGHLDQVLPKPSKVKKVEHHSAVGLDDLAGFIAAVRRVPGMGAR--ALEFAILTAARSG 255 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+R LW D + + MK + H VP+S Q ++LL ++ S+ VF G Sbjct: 256 EVRGALWSEFDLKAAQWIVPPERMKAGEEHRVPLSKQAIKLLKSIPRFEG--SDVVFCGI 313 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGS 355 K + + + + V++++ E HGFR F +E +P + E LAH Sbjct: 314 --KGQVLSDMTLSAVMRRM--EVNAVPHGFRSTFRDWASERTNFPRELAEKALAHTIESK 369 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKV 384 V Y L KR +MMQ WAD+ + V Sbjct: 370 VEAAYRRGDLLAKRMQMMQAWADFCETPV 398 >UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LD60_RHOVA Length = 427 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 106/401 (26%), Positives = 172/401 (42%), Gaps = 24/401 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LTV+ +E +P + DG GLY SG K W +RY++ G+ + LT+G YP + Sbjct: 5 LTVRALENMRPGASRREIPDGIIQGLYFVHQPSGAKSWAVRYRVGGQTRKLTLGTYPAIG 64 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNS-------FSAIYKEWYEHK-KQVWSVG 111 L+ ARD A TA ++ G DP KAKKA+ A+ + E KQ Sbjct: 65 LKPARDLASTALAAVARGEDPAKAKKAAKEKEKAAPARDFVEAVAASFIERHSKQKNKET 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + E ++ +I+P+ G ++ DI + EV+ +RG AN+ ++ +A Sbjct: 125 HIRETERILQREIVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRKMCAWA 184 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + +P + K L D++ A A +G +A K+L T Sbjct: 185 VDRSFIAVSPCHGIKAP--ASEKSRDRLLSEDEMRAAWLAFEA-TGWPFGPLA-KLLLAT 240 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 A R E+ M W +DF+ RI TI A+ K + H VP+S+ + +L L + VS++ Sbjct: 241 AQRRDEVADMRWSEIDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVAG-VSDY 299 Query: 292 VFAGRNDKKKPICENAVLLVIKQI------GYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 VF A +QI G G + H R ++ M + P ++ Sbjct: 300 VFTTTGKTPVSGFSRAKKAFDEQITRQLGEGIPG-WTLHDLRRTAASGMTALKSPPHVVD 358 Query: 346 VQLAHANG--GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 L H +G V +Y Y ++R + W +L + Sbjct: 359 AVLNHKSGTIKGVSAVYMRYGYAAEKRTALDAWGHFLTTII 399 >UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM9_9DELT Length = 409 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 164/392 (41%), Gaps = 21/392 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 + +I +P+ K Y L + NG + + SG K W Y DGK K + +G YP +TL+ Sbjct: 3 FSEAKIRNLRPQSKKYYLREANGFSVRIMPSGAKTWLFIYTFDGKRKEMNLGHYPAVTLE 62 Query: 62 EARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 AR K A G DPV + K+ S + E+ + +A + A Sbjct: 63 AARRKYRAAFDLFEQGNDPVAMHLEKKEERRRTPFLSDLVDEYINKHAMRFKRSWAKDQA 122 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + D++P G + DI ++ ++ + DRG+ AN + ++F +A+ Sbjct: 123 -ILNRDVVPAWGQRKAVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFAVDREIL 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 + +P + M + L ++I L S A K++ TA R E Sbjct: 182 EISPCTGVK--MPAPKMARDRVLSEEEIRVLWSGLERAKISHEVQRAIKLILVTAQRPGE 239 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 + M + + E R TI A K K H V ++D +EL I + FVF Sbjct: 240 VMGMDFSEI--EGRWWTIPADRAKNGKAHRVYLTDTALEL------IGENTGGFVFPSPR 291 Query: 298 DKKK--PICENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 ++ PI NA+ + ++ + + H R +T M E + I+ L H+ Sbjct: 292 HRENPRPIGSNAMTVAHRRNKDKIPLEDFTPHDLRRTAATFMAEMGTMDEVIDAILNHSK 351 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 G +R +YN +Y +++ ++ W L + Sbjct: 352 MGVIR-VYNQYRYDTEKQATLEAWERRLQRIL 382 >UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7T3_LARHH Length = 416 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 164/405 (40%), Gaps = 27/405 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLY-VPVSGKKVWQLRYKIDGKEKI--LTVGKYPL 57 +LT +Q +P +K GL+L + G W R+ +K L +GKYP Sbjct: 3 VLTDRQAANIRPTDKAKAHGGVVGLWLIPLKEKGTGRWIFRFTSPTSKKRRDLGLGKYPA 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSN-------NNSFSAIYKEWYEHKKQVWSV 110 +T+++A + AR + GIDP+ K+ +F +E WS Sbjct: 63 ITIKQAGELGEAARLLVLQGIDPIDHKREQEAAAEAANERITFEQAAIHTHETLSPGWSN 122 Query: 111 GYAT-ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 +A+ + + P IG + D+ V+ E A + R+R V Sbjct: 123 RHASADWINSLRRHVFPKIGDKPVADLVRRDFAAVLLPIW-LVLPETAARVRQRMQTVME 181 Query: 170 YAIVTGRAKYNPAPDLADAMKGY------RKKNFPFLPADQIPAFNKALATFSGSI-VSL 222 + + N + R+++ P +P +PAF A + V+ Sbjct: 182 WCLARDLIAANQCDSALSRLLPKQPSKAEREEHHPAMPWRLLPAFVAAHLGEGRPVSVAR 241 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 + L TA R+ E+R M+W VD ++ TI MK H VP+SD+ + +L Sbjct: 242 PMLEFLILTAARSGEVRGMVWDEVDLSAKVWTIPGERMKAGATHQVPLSDRAMAILRQQR 301 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE-----GLESGHGFRHEFSTIMNEH 337 P S VF ++ + + + + + ++ + HGFR F EH Sbjct: 302 E-RHPFSAMVFP--PNRGRVVSDMTLTRYLHEVDAPSDTEGRHATVHGFRSTFKDWAIEH 358 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 +P + E LAH V Y+ + L++RR +MQ WAD+++ Sbjct: 359 GYPGELSEKALAHMIKNKVEAAYHRSSQLEQRRALMQAWADYVES 403 >UniRef50_D0SVD2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SVD2_ACILW Length = 388 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 109/382 (28%), Positives = 178/382 (46%), Gaps = 12/382 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTL 60 L + A + + + YRL D LY +V +G K WQ RYK +GK VG YP++ Sbjct: 12 LADTVLTALEVEMQDYRLWDSPNLYFFVKANGSKSWQFRYKKRNGKWGWKGVGAYPIIKA 71 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 +EAR A K+I G + S++ + + K++ WS +++ Sbjct: 72 KEARVIASGYLKEIEAGT------FLEVDKYKLSSLIESLLDKKQKKWSPKNFSKMQLSI 125 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFE-DRGAMERANKARRRCGEVFRYAIVTGRAKY 179 I P G +++ I+ M+ E R E D + K E + +A + K Sbjct: 126 KKHIYPEFGNRDLRTIKTMEWYEFFARLEYDLKIPVQMRKLLSFAREAYDWACIYCEYKE 185 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 NP ++ + ++ NF F+ ++P A+ ++S S + I ++L R EL+ Sbjct: 186 NPVREVQGFFERHKSGNFKFVDLIELPDLLSAIRSYS-SRSTAIGLELLLLLFPRPGELQ 244 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 W+ DF +I A +MK +K H VP+ DQ + LL L I P S ++F RND Sbjct: 245 QAKWEQFDFHRKIWIKPAEMMKNKKEHRVPLPDQAIILLKRLKEIQTP-SPYLFPLRNDP 303 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD-AIEVQLAHANGGSVRG 358 + + + +GYE + HGFRH ST +N IE L+H G +G Sbjct: 304 MMAMSVDTFNEALISLGYENKQHPHGFRHLASTTLNNKFSDKYQIIESALSHVKQG-TKG 362 Query: 359 IYNHAQYLDKRREMMQWWADWL 380 IY+ A++ +R ++MQ WAD++ Sbjct: 363 IYDKAEHFQERVDLMQGWADYV 384 >UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepID=Q21D10_RHOPB Length = 429 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 112/416 (26%), Positives = 169/416 (40%), Gaps = 46/416 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LTVK +E + DG GLYL + G K W RYK+ G+ +G + L+ Sbjct: 8 LTVKTVEHL---SRRGMHADGGGLYLQIAEGGSKSWLFRYKLHGRTHWHGLGSLRDVGLE 64 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN--------SFSAIYKEWYEHKKQVWS-VGY 112 EAR+KA ARK G DP++AK+ + +F K + + + W + Sbjct: 65 EAREKATGARKVRRNGGDPIQAKRQAEAAARIEAAKAITFGEAAKRFIKANRAGWKNAKH 124 Query: 113 ATELAKMF----------DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR 162 A + +D I L I I+ +L +I E A + R Sbjct: 125 ADQWVMTLLGVDQKGKPSKNDYCKTIRDLPIGAIDTTLVLRIIEPIWA-SKTETATRIRS 183 Query: 163 RCGEVFRYAIVTG--------RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALAT 214 R +V A G R K + L K + +N P LP Q+P F + L Sbjct: 184 RIEQVIDAAKAKGEFNGENPARWKGHLDNLLPATSKVRKVRNHPALPYRQLPDFMRKLRE 243 Query: 215 FSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQV 274 G+ + A + TA+R + W +D + + TI A++MK H VP+S Sbjct: 244 RDGAAAA--ALEFQILTAVRPGNAVAAKWDQIDRQTSVWTIPAALMKSDAEHRVPLSKAA 301 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIG----------YEGLESGH 324 + +L + TK SE++F N K KP+ + ++ VI ++ + H Sbjct: 302 LAVLDRM-EATKDDSEYIFP--NTKGKPLSDASMAAVIDRMNELERRWIDPKLDREIVPH 358 Query: 325 GFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 GFR F EH + E LAH V Y +LD R MM+ WAD+ Sbjct: 359 GFRSSFRDWAAEHGYDDPVAEAALAHKVSDEVVAAYRRTTFLDLRNRMMEDWADYC 414 >UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RKK3_ACIRA Length = 426 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 102/426 (23%), Positives = 181/426 (42%), Gaps = 55/426 (12%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDG----------KEKI 49 L+V +I+ R G +GL L V + +VW LR + + Sbjct: 11 LSVAKIKN------TGRHSVGGVDGLCLNVEGN-SRVWILRAVVGKRLDKDGKLKPHRRD 63 Query: 50 LTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNN--------NSFSAIYKEWY 101 + +G YP ++L EAR KA R I GIDP+ K+ +F K Sbjct: 64 IGIGPYPEVSLAEARAKATELRLQIRSGIDPIAHKQEQLEKLYVQKLRDKTFMECAKVVI 123 Query: 102 EHK-KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKA 160 +K +++ + + + + I P +G + I I + + EV+R + E A + Sbjct: 124 ANKTRELKNEKHIGQWTSTLETYIYPTLGDISIGTITKVDIAEVLRPIWIK-KNETAKRI 182 Query: 161 RRRCGEVFRYAIVTGRAKYNPAPDLADAMKG------YRKKNFPFLPADQIPAFNKALAT 214 R R +F YA G + + + ++ + P LP +Q+ F + L Sbjct: 183 RGRIETIFDYAKAMGYFEGDNPAEWKGNLEPIFGNIKQESRPHPSLPYEQVAGFIQHLRQ 242 Query: 215 FSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQV 274 G +S A + TA R+ E+ W+ +DF+N++ I MK K H VP+S + Sbjct: 243 KKG--ISPKALEFAILTACRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRVPLSQEA 300 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE------------- 321 V LL ++ T+P +F+F + + + ++ ++IK++ + L+ Sbjct: 301 VNLLKSIQEYTQPQ-DFIFPAPRN-GAMLSDMSLTILIKRMHEQKLKENGLGYIDPKQNR 358 Query: 322 --SGHGFRHEFSTI-MNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD 378 + HGFR F ++ ++P + E LAH V Y YL+KR+ +M WA+ Sbjct: 359 VITTHGFRSTFRDWSADKTDYPREVCEHVLAHKLPDEVEAAYLRGAYLEKRKGLMADWAE 418 Query: 379 WLDEKV 384 + + Sbjct: 419 FCSANI 424 >UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas intermedia K12 RepID=C7I5J5_THIIN Length = 401 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 112/393 (28%), Positives = 166/393 (42%), Gaps = 25/393 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ K + GLYL V G +W RY + GK ++G +TL Sbjct: 6 LTAQEVR--KWSKVDGLHRVATGLYLRVR-GGSALWTFRYMVAGKASEQSLGPISALTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKA---SSNNNSFSAIYKEWYEHKKQVWS-VGYATELA 117 +A KA R I G D A + +++F + + +E K W +A + Sbjct: 63 DALAKAAEVRAKIRRGEDFALRPSATVVPTPSDTFEEVALQLWESMKPGWKNPKHADQWI 122 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-R 176 P G + +I ++L + E A + R+R V A G R Sbjct: 123 NTLRMYAFPRFGRKAVSEIGTEEVLAALTPIWQ-TKHETATRLRQRIEAVLSAAKARGLR 181 Query: 177 AKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 A NPA L K R K+F + ++PAF L + +S A + Sbjct: 182 AGENPAAWRGHLNALLPTISKKRRVKHFEAMDWREVPAFMAQLRQRAN--MSAWALQFTI 239 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 TALRT + W +D E R+ I A MK + H VP+S Q VELL L + S Sbjct: 240 LTALRTGTVIGTPWSEIDLERRLWVIPAERMKAQVEHRVPLSRQAVELLQALPR--QEGS 297 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQL 348 ++VF G I A+L +++ G + HGFR FS E +P+ +E+ L Sbjct: 298 DWVFWGARKPT--ISNMAMLELLR--GMRPGLTVHGFRSSFSDWAAESTHFPSQTVEMAL 353 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AH V Y ++KRRE+MQ W D+LD Sbjct: 354 AHMITNQVEAAYRRGDLIEKRRELMQAWGDYLD 386 >UniRef50_B2TTV9 Site-specific recombinase, phage integrase family n=25 Tax=Proteobacteria RepID=B2TTV9_SHIB3 Length = 439 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 106/402 (26%), Positives = 169/402 (42%), Gaps = 27/402 (6%) Query: 2 LTVKQIEA-AKPKEKPYRLLDGNGLYLYVPVSGKK-VWQLRYKIDGKEKILTVGKYPLMT 59 LT QI A K E+ DGNGLYL + K W+ RYK+ GK + + +G Y ++ Sbjct: 24 LTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFRYKLAGKSRAMLIGSYSELS 83 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK-----------ASSNNNSFSAIYKEWYEHKK-QV 107 L +AR+ A +++G D K+ A N S + E++E + Sbjct: 84 LSKARETAKELSARVALGYDVAGEKQKHKTEALAKMEAEKNAMRVSELAAEYFERQILPR 143 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 W + L + D DI P IG ++++D++P + ++++ DRGA A R + Sbjct: 144 W--KHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLKGIVDRGAPTIATDVLRWTRRI 201 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKK-NFPFLPADQIPAFNKALATFSG-SIVSLIAT 225 F Y I + NP A G ++ +L D++ KA+ T G S + I Sbjct: 202 FDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRDELIQLFKAMRTAKGFSRQNEITF 261 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 K+L +R EL + W+ D + + + K +P+ VE L L + + Sbjct: 262 KLLLALCVRKMELCAARWEEFDLDGAVWHLPEERSKNGDPIDIPLPSPAVEWLRELHTFS 321 Query: 286 KPVSEFVFAGRNDKKKPI-------CENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 S +V R + + I A+ V ++ + H FR T + Sbjct: 322 CN-SAWVLPARKMQNRMIPHIQESTLPVALAKVRAEMPDVPNFTIHDFRRTARTHLAALG 380 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 E L H G V GIYN QY D+R+ + WAD L Sbjct: 381 VDPVVAERCLNHRIKG-VEGIYNRHQYFDERKAALAQWADLL 421 >UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella silvestris BL2 RepID=B8ERI0_METSB Length = 400 Score = 248 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 100/394 (25%), Positives = 163/394 (41%), Gaps = 18/394 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT+K I A KP+ K + DG+ GLY V SG K W R+ +GK K LT+G YP + Sbjct: 5 LTIKGIAALKPQAKRCEVPDGHTRGLYFVVQPSGAKSWAYRFSFEGKPKKLTIGSYPAID 64 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWY--------EHKKQVWSVG 111 L AR A + ++ G +P KK + +H + Sbjct: 65 LSRARSIALASATKVANGRNPAAEKKVEREKARKPSDLDLVDVVVAQFVVKHVEPKTRPQ 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 A E+ ++ +IL G + +I + +++ DR A AN+ + ++ Sbjct: 125 SAKEMKRILKREILSRWSGRRLTEITRSDIRDLLEAIADR-APIMANRVFEVISSLINWS 183 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 I +P L K+ L ++ +A S+I KVL + Sbjct: 184 ISMEMLSASPIAGLRKP--SPAKRRDRILSEKELTDVWQASERAGWPYGSMI--KVLILS 239 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 R E+ M W +DFE R T+ A K K H++P+S ++++L TL I S F Sbjct: 240 GQRRSEVSDMTWSEIDFEERSWTLPAVRTKNGKGHIIPLSPTIIDVLLTLPRI-GSESGF 298 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF ++ E + H R F+T M + +E L H+ Sbjct: 299 VFTTNGFSPIRNFARRKKALMMSCQSENNWTLHDLRRTFATGMARLKVELPVVEKLLNHS 358 Query: 352 NG--GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +G G V+G+Y + ++RE M WA ++++ Sbjct: 359 SGTFGGVQGVYQQYDFQSEKREAMNLWASYVNKI 392 >UniRef50_B9KC61 Site-specific recombinase, phage integrase family n=5 Tax=Campylobacter RepID=B9KC61_CAMLR Length = 392 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 181/395 (45%), Gaps = 25/395 (6%) Query: 2 LTVKQIEAAK--PKEKPYRLLD--GNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 LT +++ K +K + D GLY++V SG+K+++ R + +T+G+YPL Sbjct: 7 LTDSFLKSVKCDNGKKFIKFSDPSIKGLYVFVYPSGRKLFKTR---QANDTYITLGEYPL 63 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 ++L E R+ A + K + G + AK+ F +Y E E+ ++ + Sbjct: 64 LSLAELREIAINSHKLKAKGQNISNAKRL-----KFGVLYDEVLENARKSNLAAKTIQRG 118 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + I + I DI+ + ++ +++ E + A KA+ +VF YA+ Sbjct: 119 LSYKEGIFKSLEYKNINDIKRVDIVNILKTIEHKSA--TLQKAKIWINKVFEYALQLEII 176 Query: 178 KYNPAPDLADAMKGYRKKNF----PFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 + NP + + + + L I + L + TA Sbjct: 177 ENNPVASIKNNIVFKKPNQVIHQPTLLDESDIKEYINTLIHSDIKQSHKNLMLFVLLTAQ 236 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R + W +DF+N I TI A MK RK H + +S Q + +L +I V+++VF Sbjct: 237 RPGNVIKATWDEIDFKNEIWTISAQKMKMRKEHNIALSKQAISILKNQYAI--KVNDYVF 294 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN----EHEWPADAIEVQLA 349 AG + KK EN K++GY+G++S HGFR F +I N EH D E LA Sbjct: 295 AG-SSKKGCNSENITCNTNKRLGYKGIQSAHGFRAMFRSIANEKQLEHGVSMDIAEQCLA 353 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H ++ YN ++ ++ +R +MQWW D++++ Sbjct: 354 HEQKNAILKAYNRSKNIELKRILMQWWGDYIEKLA 388 >UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF8EC Length = 399 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 154/396 (38%), Gaps = 21/396 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLY-VPVSGKKVWQLRYKIDG---KEKILTVGKYPL 57 LT K I + K ++ LY+ +G W ++ + + + +G+YP Sbjct: 6 LTDKIIRSLKSEQIKGDF--VENLYIKANKAAGSFSWLYKFTNPHNKAQRQKIILGRYPR 63 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNN-----NSFSAIYKEWYEHKKQVWSVGY 112 + AR A + GI P + + +F + + E + SV Sbjct: 64 TPIDFARKIAMEYNALVKQGIHPTEHQAQQKQQKEIEAMTFKEMTSLYREFRAD--SVKN 121 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + + I P G L + I + ++ E G K ++ YA Sbjct: 122 VDDAISRVEMYIFPKFGDLPLNKISLAEWHRTLKPMEA-GKNNTLLKICSTSKQILDYAQ 180 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G +NP L + + + K+ P + ++ F + L + ++ + TA Sbjct: 181 TCGYIDFNPLTTLRASFRKKKAKHNPTIEPKRLAEFIRDLFLSDVERSTKLSIEFQLLTA 240 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R E W +DF+NR+ + A MK K H++ ++ Q + LL + T E++ Sbjct: 241 TRPNETAKAKWAEIDFKNRLWKLPADKMKTGKPHIITLNSQALALLENIRRFTGDR-EYI 299 Query: 293 FAGRNDKKKPICENAVLLVIKQI---GYEGLESGHGFRHEFSTIMNEHEWP---ADAIEV 346 F+ K IK I Y + + HG R FST +N P I+ Sbjct: 300 FSSSRSKTGHQSTQTANNAIKSIQGGKYHSVLTSHGLRSVFSTYLNGLHDPMIHNVHIDA 359 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH G YNH+ + +++R +MQ W D++++ Sbjct: 360 CLAHVVGNGTSRTYNHSAHEEQKRYIMQKWGDYVEQ 395 >UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FSX1_PSYA2 Length = 444 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 167/401 (41%), Gaps = 21/401 (5%) Query: 3 TVKQIEAAK----PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYP 56 T QI+ A ++ Y + GL LY+ + ++ R+ + GK K T+G YP Sbjct: 44 TDSQIKQAIKEHDSGDEVYTIQGYKGLNLYIRDNKTTTFRHRFTSPVTGKRKNFTLGAYP 103 Query: 57 LMTLQEARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 + TL++ARD ++ GIDPV A +FS + EW + + + Sbjct: 104 VFTLEQARDMYRNNLSLLAGGIDPVFHHQDAHNKKRAMPTFSELADEWLQSQIASKQFEH 163 Query: 113 AT-ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 T E + IG + I I+ +L I+ E + A + R C +F A Sbjct: 164 RTIEQKRTHIAYAAAYIGRMPIDHIKTPDVLRAIKDIEKKTIP-TAKRVRGVCQRIFALA 222 Query: 172 IVTGRAKYNPAPDLADAMKGYRK--KNFPFLPADQIPAFNKALATFSGSI-VSLIATKVL 228 I G NPA +AD M K + + + + + + K+ Sbjct: 223 IGQGYIDNNPAIAVADLMLPKPKTEHHHAIIEPIAFGKLLSDIDSVTDFYGHAQNILKLQ 282 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHV----VPMSDQVVELLTTLSSI 284 R ++ SM W +DF+ + T R V VP+ Q +E L L ++ Sbjct: 283 ALLFQRNGDMCSMRWDAIDFDAKTWTFSPQKTGNRGDMVASLVVPLPTQAIEHLRALHAL 342 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADA 343 T + +VF K+K + + + ++GY+ + + HGFR T+M E Sbjct: 343 T-SKTPYVFYNSRRKEKFEHQQQLNKFLWRLGYKDVHTPHGFRASARTLMVEQLGISETL 401 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E+QL H + YN +DKRR+MMQ WAD+LD+ Sbjct: 402 AELQLGHNVRDANGRAYNRVTMIDKRRDMMQRWADYLDQLR 442 >UniRef50_A3JW30 Site-specfic recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW30_9RHOB Length = 389 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 162/385 (42%), Gaps = 17/385 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT + K P R D GL LYV SG+ W R ++G + + +G P+ T Sbjct: 4 LTAAFVRTVK---NPGRYSDRGAVGLQLYVKKSGRSYWVQRLTVNGIRRDIGLGSPPITT 60 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAK 118 L EAR+ A+ ++ G DP+ K+ + SF ++ W A Sbjct: 61 LAEAREVAFENKRIARAGGDPLAQKRQKAVIPSFEQAARQVVVELGPTWRGAKEAASFIS 120 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 + + P IGG + +++ + +I + A A + + R VF+++I Sbjct: 121 TMECYVFPRIGGSRVSNVQSSDVRNIIMDVR-KTAPTVAARLQTRISAVFKFSIAKNWRT 179 Query: 179 YNPA--PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NPA LA ++ K LP Q+ A+ + + +A + TA R+ Sbjct: 180 DNPATSSALALPKPTHKPKPRVSLPYLQVSGCIHAVNNSHAWVGTKLAIEFTILTASRSG 239 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+R W +D + + MK H VP+S++ + +L I S +F Sbjct: 240 EVRKAEWCEID--GDLWNRPSEHMKEEIAHSVPLSERALAILEKAQEIN-NESGLIFPAP 296 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGS 355 + + + +IK++G+ HGFR F T E + + EV LAH+ GG Sbjct: 297 RGG--MLSDMTMSKLIKELGFAAD--VHGFRTSFRTWSQEQTNFAWEVGEVALAHSVGGK 352 Query: 356 VRGIYNHAQYLDKRREMMQWWADWL 380 Y + YL+KRR MM W+ +L Sbjct: 353 SERAYARSDYLEKRRLMMAAWSSYL 377 >UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QAC1_PSYCK Length = 448 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 98/405 (24%), Positives = 167/405 (41%), Gaps = 23/405 (5%) Query: 3 TVKQIEAAKPKEKPYRLLDGNG--LYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLM 58 + + I + KP++K Y + N L+L V + K W RY K +++G YP + Sbjct: 8 SDRSISSHKPEDKKYFVAVKNHPKLFLMVRPTETKSWMYRYYPPSNPKQSIISIGIYPSI 67 Query: 59 TLQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 + A + +S GIDP +K S NSF+ E+++ +Q Sbjct: 68 SYARACEVWREYEDLLSKGIDPKIHREDIKKSFISKTKNSFNHFAWEYFDTLEQSQKGNT 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRG------AMERANKARRRCGE 166 + I IG I +I ++LEV+ + + ++A + + Sbjct: 128 LIRKKGRLEL-ICSYIGNEPISEIGSPRMLEVLLDIQAKSLNKDDKPTDKAERCAGIASD 186 Query: 167 VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIAT 225 VF YA G NPA + + + P + + +A+ T G ++ + Sbjct: 187 VFVYANARGFCSSNPAALIKSQLAKSSYGHRPAVTKPKDLAKLLRAIETIEGDPNTINSL 246 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVELLTTL 281 ++L +R +LR M W ++D E + +G+ K VVP+ Q V +L Sbjct: 247 RLLALLFVRNGDLRRMCWIDLDLEAGRWRLKPLKGQGKVNMVKDMVVPLPRQAVAILREQ 306 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWP 340 I F+ K + I + +K +GY+ + HGFR TI+ E ++P Sbjct: 307 QKINGHTKYVFFSQTAKKHQIISDATANKRLKDLGYKDIHCAHGFRATAKTILQEQLKYP 366 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +E+ L H Y +Y+D R +MMQ WAD+LD E Sbjct: 367 LVLVEMALGHTTKDPNGTAYGRFEYIDDRSDMMQKWADYLDALRE 411 >UniRef50_Q92LG2 Phage-related integrase n=1 Tax=Sinorhizobium meliloti RepID=Q92LG2_RHIME Length = 409 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 106/404 (26%), Positives = 166/404 (41%), Gaps = 39/404 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 LT KQ+ K KP DG LYL V +G K + ++ ID K++ T+G Y Sbjct: 6 LTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVKATIDKKQREWTIGSYGSEEHH 62 Query: 58 MTLQEARDKAWTARKDISVG-------------IDPVKAKKASSNNNSFSAIYKEWYEHK 104 +L EAR + I G ++P + FS + E Sbjct: 63 FSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFPAPLFGPFSIELIQQIEGG 122 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 + + + + + I + I +L ++R A E A++ R R Sbjct: 123 FR--NAKHRAQWRSTLETYCKSIW-EKRVDRITTDDVLAILRPIWSTKA-ETASRVRGRI 178 Query: 165 GEVFRYAIVTG-RAKYNPAPD------LADAMKGYRKKNFPFLPADQIPAFNKALATFSG 217 V A V G R+ NPA L + ++ + P LP +P + L + Sbjct: 179 ERVLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKLTSID- 237 Query: 218 SIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVEL 277 ++ A + L TA R+ ELR W+ D E R+ TI AS MK + H+VP+SD +E+ Sbjct: 238 -TIASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSCIEI 296 Query: 278 LTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH 337 L + I S+FVF G + P+ + + V+ G + HGFR F E Sbjct: 297 LKRMQKIRH--SDFVFPGTR-EHAPLSDMTLSKVLH--GLCKGYTVHGFRSTFRDWCGEK 351 Query: 338 -EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 ++ + E LAH G +V Y L+ RR +M W ++ Sbjct: 352 TDFSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFI 395 >UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2Y2_9BACT Length = 406 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 111/403 (27%), Positives = 184/403 (45%), Gaps = 27/403 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I A KEK Y L DG+GLYL + GKK W +R + G+E+ + +G+YP+M+L Sbjct: 1 MLTNTAIAKAAAKEKDYMLFDGDGLYLRISTKGKKKWLIRSFVGGRERKVVIGEYPVMSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 QEAR + + G+ + +F ++ W + K++ S + + + Sbjct: 61 QEARRERDDRKMKARTGVS------IRNKTVTFGDVFARWLKKKEKAVSPDHYKIIKRRI 114 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + +LP + + DI +LLEV++ +RG ++ A + + A G N Sbjct: 115 EMYLLPYLANRPVADISRPELLEVLQHPIERGLIDTARRTGALARSILDAAADKGEVALN 174 Query: 181 PAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 A DL+ ++ + +NF ++ A+ + IV A +++ YT +R ELR Sbjct: 175 IAADLSRSLPEWEVRNFKSAFDPREVRRLLLAIDCYPRQIV-RYALRMVSYTFVRRSELR 233 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK-------PVSEFV 292 W + + I K ++I +VP+S Q +E+L + I + + + Sbjct: 234 RATWAEIHEDE--WHIPVVHAKKKRIQIVPLSRQALEILDAMRRIAQIRWKGQPFEDKPI 291 Query: 293 FAGRND-----KKKPICENAVLLVIKQIGYEGLESG-----HGFRHEFSTIMNEHEWPAD 342 F + I V L ++ HGFRH ST+++EH W + Sbjct: 292 FPSTRNTPSGSPYMGISAMEVALKWLVAHVPAPDTPPLIDLHGFRHMASTLLHEHHWDHE 351 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 AIE QL+H Y+ ++ L RR MMQWWAD+LD E Sbjct: 352 AIERQLSHLKRDKTEATYDKSKLLPLRRRMMQWWADYLDAVKE 394 >UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurellaceae RepID=A6VNS1_ACTSZ Length = 427 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 107/408 (26%), Positives = 180/408 (44%), Gaps = 29/408 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59 L+ QI AAKPK+K Y L DG GL L + +G K W Y +K T+G+YP ++ Sbjct: 8 LSAAQINAAKPKDKIYYLSDGLGLRLAIKPNGTKTWLFNYTKPYIKKRTDKTIGQYPSVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHK------KQV 107 L +AR KA R+ ++ IDP + + N+FS + EW ++ ++ Sbjct: 68 LADARAKAHEFRELLAKNIDPHQNEIEKEKQERLPMSNTFSHVANEWLVYREKIGMERKD 127 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 +S T+ + +D + I+G ++++ L ++ RG K + Sbjct: 128 YSEKTKTDTIRR-VNDAIEILGDTSFKELKLQHGLALLDAHRTRGQYTEMKKRLFVLKSI 186 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 YA G N L + + + K+F + ++P F L + SL+A Sbjct: 187 AEYAERFGYWDRNEWRYLGEDLPSPDKNKHFAAIHYKELPEFLFELRKANIHYSSLLAIL 246 Query: 227 VLRYTALRTKELRSMLWKNVDFENR-----IITIDASVM-KGRKIHVVPMSDQVVELLTT 280 R E + ++ ++T+ + KG + H++P+S Q +LLT Sbjct: 247 WGLLNVTRASETVGAKFSDISENENLPGELVLTVQVNKGGKGARDHLIPLSRQAGKLLTF 306 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIG---YEGLESGHGFRHEFSTIMN-- 335 + + F A + + I VIK +G Y+G+ + HG R FS+ N Sbjct: 307 IRKNSTSDYLFPAAYKRGRLVHINPQTPNDVIKSMGAGKYKGIMTNHGMRTLFSSYCNDN 366 Query: 336 --EHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 E + IE+ L+H NG VR YN A+YL R + +Q WAD+++ Sbjct: 367 RLELGLDPEIIEICLSHLNGDKVRNAYNRAEYLPYRLKTLQAWADYVE 414 >UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3_FRATN Length = 413 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 111/406 (27%), Positives = 184/406 (45%), Gaps = 36/406 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++++ K K YRL DGNGLY+ V +G K WQ RYK K L +G YP ++L+ Sbjct: 5 LTASKLQSLKATGKDYRLNDGNGLYIKVSKAGSKSWQFRYK----GKWLGIGSYPAISLK 60 Query: 62 EARDKAWTARKDISVGIDP--VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA-----T 114 +ARD+A+ + ++ G DP K K +NN FS + + +E K G+ Sbjct: 61 QARDEAFKYNQMLAGGKDPKLEKEKGKYQDNNLFSIVSAKAFETKDPSKPYGWKSEEVYN 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 +++ ILP + I DIEP QL ++ + K + +F YA+ Sbjct: 121 RNLSIYNRFILPSLKTFNINDIEPYQLAGIL----ETTTPSNQRKIKNLLNMIFTYAVGK 176 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIP----AFNKALATFSGSIVSLIATKVLRY 230 G KYN A D+ + + F F+ + + + G + +A K+ Sbjct: 177 GILKYNIARDIQAEKEDPK--GFEFINPVEDKYNFSQLLNDIYNYKGQYNTKMALKLAVL 234 Query: 231 TALRTKELRSMLWKNVDFEN------RIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 R + SM W+++ N + I A MK + P+S Q +LL + Sbjct: 235 VGFRPNNIVSMKWEDIQEANIDGKKIPFVFISADNMKMSRDFRQPLSKQAYKLLMEIKEY 294 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESG----HGFRHEFSTIMNEHE-- 338 E+VF + KK E+ + +GY G + HGFR T ++ Sbjct: 295 NGGF-EYVFHSLSKKKHITIESLSKALRDTLGYNGTDKPKQHTHGFRKSVRTYISSIRSK 353 Query: 339 --WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 W +D+I + L+H+ ++ IY+ +L +R +M+Q WAD++D+ Sbjct: 354 YNWCSDSIRMILSHSKENAIDNIYDKNDFLLERSQMLQLWADYVDD 399 >UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter RepID=A7ZG37_CAMC1 Length = 406 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 104/404 (25%), Positives = 190/404 (47%), Gaps = 25/404 (6%) Query: 3 TVKQIEAAKPKEKPYRLLDGNG---LYLYVPVSGK---KVWQLRYKIDGKEKI---LTVG 53 ++ K K + +G LY+ + K K + +Y+ +++ + +G Sbjct: 6 NDLALKKFTLKNKNREWVKDDGVKFLYVLAYKTQKETTKTFYFKYQESNQKRTTKQIKIG 65 Query: 54 KYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 KYP +TL EAR KA + G D ++ A +F + EW + ++ + + Sbjct: 66 KYPSITLAEARAKALELERLRDRGED-LQTATAKQKTITFKDVADEWIDKEQSKELIAFN 124 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGA-----MERANKARRRCGEVF 168 ++ + + +++P +G I +++ I + + R A E + + R ++ Sbjct: 125 KQIGR-IEKNLIPYLGDKAITELKRRDYAHAIEQIQAREAKRGITHETSLRTFRLLRKIL 183 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPF---LPADQIPAFNKALATFSGSIVSLIAT 225 A+ G ++NP D+ N F ++ A+ + GS + A Sbjct: 184 DLAVNKGYIEHNPTRDIIFNDAFKTSTNNHFKAITEPKKLKELLGAMQDYQGSFYTQQAL 243 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 +T LR+ +R + W+ VDFEN +IT A MK R++ +PMS QV +LL T+ + Sbjct: 244 IFGVHTFLRSANVRGLKWQYVDFENNLITFPAEAMKLREVFYMPMSKQVKKLLKTM--LE 301 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE----HEWPA 341 +FVF +P+ ++ + IK++G+ HG R ST++NE H + + Sbjct: 302 HKRGDFVFPSGISATRPLSDSTLNQAIKRLGFGDEMVFHGLRTTASTLLNENIKNHGFSS 361 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 D IE+ L H SV+ IY+ +Q LD+R ++MQWW+D+LD V+ Sbjct: 362 DVIELCLDHKERSSVKAIYDRSQRLDERAKLMQWWSDYLDSLVK 405 >UniRef50_B5J8B6 Site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacteraceae RepID=B5J8B6_9RHOB Length = 436 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 172/371 (46%), Gaps = 25/371 (6%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKILT--------VGKYPLMTLQEARDKAWTARKDISV 76 LYL V SG + W +R + G++ +G ++T+ +ARD+A R+ Sbjct: 65 LYLVVDPSGARRWIVRVVVKGQKNKKGAPLRTDFGLGGADIVTINQARDRALEYRRMAKQ 124 Query: 77 GIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAKMFDDDILPIIGGLEIQD 135 G++P A + +F ++ + + W + + D P IG + + Sbjct: 125 GLNP--RFNAQRDIPTFEEFAQQVHIERMPTWKNAKHGQQWINTLRDYAFPKIGRMPVDS 182 Query: 136 IEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPAPDLADA----MK 190 I+ +++ + E A + +R V A G R+ NP + DA Sbjct: 183 IDQPEVMMCLSPIWTE-KHETARRLAQRIKTVLDVARSKGFRSGENPVTAIKDAQALPKV 241 Query: 191 GYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFEN 250 + K+ + +PAF L T + +S A + T RT E+ M W+ +DF+ Sbjct: 242 KTKPKHHKAMHWRDVPAFYTDLKTRNA--MSANALRFTCLTGSRTSEVLGMRWEEIDFDA 299 Query: 251 RIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLL 310 R+ T MK ++H VP++D+++ ++ L ++ S++VF G+ + KP+ ++L+ Sbjct: 300 RLWTCPIERMKTGEVHRVPLTDEMLSIIEPLKAL---KSDYVFEGQ-KRHKPLSNMSMLM 355 Query: 311 VIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKR 369 +++++ EG+ + HGFR F +E P + E+ L+H G V Y + ++KR Sbjct: 356 LLRRMDVEGV-TVHGFRSTFRDWASEVASAPREIAEMSLSHRVGSDVERAYARSDLIEKR 414 Query: 370 REMMQWWADWL 380 R +M+ W+ ++ Sbjct: 415 RALMKRWSMYV 425 >UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria RepID=B0T5C0_CAUSK Length = 436 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 106/411 (25%), Positives = 171/411 (41%), Gaps = 42/411 (10%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q++ +P DG GLYL V G K W RY + G+ + + +G ++L Sbjct: 8 LTALQVKR---TTRPGMHPDGGGLYLMVQKGGGKSWVYRYMLQGRAREMGLGPAHTISLS 64 Query: 62 EARDKAWTARKDISVGIDPVKAKK--------ASSNNNSFSAIYKEWYEHKKQVW-SVGY 112 EAR A AR+ GIDP++ ++ ++ +F + K W + + Sbjct: 65 EARAMARDARRLKFDGIDPIEQRQLARTRTTLEAAKGFTFKQASSAYIRANKAGWRNEKH 124 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + PI G + DI+ +L V+ E A++ R R V +A Sbjct: 125 AQQWESTLTTYADPIFGSRGVSDIDTGMILAVLEPIWS-TKPETASRVRGRVEAVLDWAT 183 Query: 173 VTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 G + NPA L + ++ ++ LP ++ AF AL G+ A Sbjct: 184 ARGLREGENPARWKGHLEKLLPAKSRVHKVEHHAALPYAELSAFMAALKDQPGAGAR--A 241 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 + TA RT E+ W +D ++ I A MKGRK H VP++ ++E+L + Sbjct: 242 LEFTILTAARTGEVIGAEWSEIDLAGQVWIIPADRMKGRKEHRVPLTAPLIEILEGRKAD 301 Query: 285 TKPVSEFVFAGRNDK-----------------KKPICENAVLLVIKQIGYEGLESGHGFR 327 V V + K + A+L V+K++ E L + HGFR Sbjct: 302 YAAVIRRVLESKRQPIPDDIPPVGPLFWGTLFGKKLSNMAMLAVLKRMKREDL-TAHGFR 360 Query: 328 HEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 F E E+ ++ +E+ LAH G V Y +KR+ +M+ WA Sbjct: 361 STFRDWAAETTEYRSEIVEMALAHTIGNKVEAAYRRGDLFEKRKLLMEDWA 411 >UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4A7S2_9GAMM Length = 412 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 161/395 (40%), Gaps = 36/395 (9%) Query: 15 KPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 + R LD GLYL V G K W RY+ +G+ + L +G YP ++L +AR + AR Sbjct: 18 RRGRHLDAEGLYLLVARGGSKNWIYRYQHEGRRRELGLGGYPAVSLAKARMRRDAARDQR 77 Query: 75 SVGIDPVKAKKASSNN----------------NSFSAIYKEWYEHKKQVW-SVGYATELA 117 G DP++ + +F + E+ ++ W + + + Sbjct: 78 QQGHDPLEVRDRQRAQLRAQMAAETAERERAAMTFLRVADEFIDNNAAGWTNRKHGQQWR 137 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 PI+G + + ++ Q+L+V+ E A + + R V YA G Sbjct: 138 NTLKTYAFPILGVVPVGEVTTDQVLQVLTPIWTE-KTETAKRLQGRIERVLDYATTKGHR 196 Query: 178 K-----------YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 + N P + ++ P+L A ++ A + T +G + L Sbjct: 197 EGDNPARWRGHLDNVLPRPGKVHRVEHQRALPYLEAPELAAKLTDVDTAAGRALLLTLLC 256 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 R T E W +D + + I A MK K H +P+ D V +L T S Sbjct: 257 ATR-----TSETLEATWSEIDLDRKEWRIPAVRMKAGKEHRIPLCDAAVAVLKTQSVHQG 311 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIE 345 ++VF G+ + K + A+ V+K+ + S HG R F + E +P E Sbjct: 312 ERGDWVFPGQK-RGKCLSNMAMTNVLKRTDWLERTSVHGLRSTFRDWVGEKTRYPERMAE 370 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 V LAH V+ Y A +++RREMM WA +L Sbjct: 371 VALAHQLTDKVQAAYFRADLMEQRREMMNEWAAFL 405 >UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A1U0R6_MARAV Length = 432 Score = 245 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 100/399 (25%), Positives = 175/399 (43%), Gaps = 35/399 (8%) Query: 8 EAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKA 67 E + E Y + +GL L + SG + W LR K+ + + +G YP ++L +ARDKA Sbjct: 23 ETGEATEVRYPVGGVSGLLLRITPSGSRQWILRAKVGNRRPDMGLGPYPEISLAQARDKA 82 Query: 68 WTARKDISVGIDPVKAKKASSNN--------NSFSAIYKEWYEHKKQVW-SVGYATELAK 118 ++ I GIDP++ K+ +F +++ + K + + + + Sbjct: 83 REMKEKIRSGIDPLEEKRTLKRALLAEQISTLTFQKAMEKYIKMKAKEFRNPRQEKQWTN 142 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA- 177 + +P +G L +++I+ + +V+ + E AN+ R R + + + G Sbjct: 143 SLNTYAIPHLGKLPVREIDLPHIKQVLDPIWE-TKTETANRVRARIENILGWCAIHGYRS 201 Query: 178 KYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 NPA K ++ +F LP D +P F + L +G+ A + L Sbjct: 202 AENPARWQGYLDEVYPSPEKIKKRGHFAALPVDDMPEFMRDLKKRTGTAAR--ALEFLIL 259 Query: 231 TALRTKELRSML--------WKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 TA RT E+ W+ +D ++ T+ A MK KIH VP++D +ELL + Sbjct: 260 TASRTNEVIGDKRIGKAGVTWQEIDLARKVWTVPADRMKSEKIHRVPLTDSAIELLKGMG 319 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPA 341 + +F G K N + ++K++ E + HGFR F E + Sbjct: 320 E--GSPEDLIFPGP--KGGIPSNNFLTALLKRM--ERPITAHGFRSTFKDWARERTAYAD 373 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 + E+ LAH N + R Y ++ +DKRR MM W + Sbjct: 374 EVSELALAHVNSDATRAAYARSELIDKRRLMMADWEQFC 412 >UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJP3_HIRBI Length = 395 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 105/398 (26%), Positives = 167/398 (41%), Gaps = 27/398 (6%) Query: 2 LTVKQIEAAK-PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT ++ K + K R DG GLYL V +G + W Y+ K + +G YP ++L Sbjct: 4 LTSNKLSDLKCKRAKTGRHSDGGGLYLNVKQTGARNWLFIYRWGDKRPSIGLGGYPSVSL 63 Query: 61 QEARDKAWTARKDISVG--IDPVKAKKASSNNNSFSAIYKEWYEHKKQV-----WSVGYA 113 EAR +A R ++ DP K + + + + + Sbjct: 64 SEARKQAAMCRDWLNQTPRKDPKKEWMVLNAPEVRIEPFGPFALRHIDAIKGDFRNAKHI 123 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + PI + +IE +L+ + E A + R R V A V Sbjct: 124 AQWRSTLERYAEPIW-AKPLNEIEVDHVLKCLEPIWA-TKNETARRVRGRIEAVLESARV 181 Query: 174 TG-RAKYNPAP---DLADAMKGYRKK--NFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 G R NPA L + R K + L DQ+ AF + L SG + +A + Sbjct: 182 RGMREDPNPASWNGQLKHVLGRKRPKQKHLAALEYDQMHAFWQTLRQKSG--IGALALQF 239 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 TA R+ E+R W +D E I +I A MK K H+VP+S + ++ +S Sbjct: 240 TILTAARSGEVRGATWNEIDIEAGIWSIPAERMKAEKPHMVPLSQAALAIIDHISK--AR 297 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE----SGHGFRHEFSTIM-NEHEWPAD 342 E +F G K PI + + ++ + + + HGFR FS NE ++P + Sbjct: 298 QGELIFMGMRAGK-PISDMTMTKALRDMKLTNSQGEAVTAHGFRSTFSDWARNETDFPRE 356 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 IE LAH+ G V Y Q +++RR +M+ WA ++ Sbjct: 357 LIEESLAHSL-GKVEAAYRRGQAIERRRALMEAWALYV 393 >UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UGI0_METS4 Length = 413 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 93/412 (22%), Positives = 158/412 (38%), Gaps = 35/412 (8%) Query: 1 MLTVKQIEAAKP-KEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 MLTV+ +E KP E+ + D GLYL V SGKK W +RY+I+ + + T+G YPL Sbjct: 1 MLTVQSVERYKPNPERRLEIPDATLPGLYLIVQPSGKKSWAIRYRINRQPRKFTIGPYPL 60 Query: 58 MTLQEARDKAWTARKDISVGIDPVK-----AKKASSNNNSFSAIYKEWYEHKKQVW-SVG 111 L AR++A A + + G+DP + A + S + + E +V G Sbjct: 61 FDLSAARERARQALQMAARGLDPYREKKAAEAAAIEAKDQVSRVVATYVERHLKVKGKPG 120 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 YA + + + +LP G I DI ++ ++ DRG AN+ +F +A Sbjct: 121 YAEQAEGLLRNHVLPHWGHRRIGDIGRADVIALVDGLTDRGMTTGANRVFATTRALFNFA 180 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + P L + L ++ ++ ++L T Sbjct: 181 LGRDLITSTPFLGLKPPLPNP--SRDRVLSDAEVRWAWLCAERIGFPFGPMV--QLLLLT 236 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 R E M+W +D + TI + K HVVP+ +E+L + I + Sbjct: 237 GTRRNETGEMVWSELD--GTVWTIPGARTKNSLEHVVPLPPAAIEILAAVPRIAGRPG-Y 293 Query: 292 VFA------------GRNDKKKPICENAVLLVIKQIGYEG-----LESGHGFRHEFSTIM 334 VF G+ + + A ++ + H R ++ M Sbjct: 294 VFTRNGSTPASDLSAGKRRLEAAMLTVAQSEAARRGEDPKAVTIPRWTLHDLRRTAASGM 353 Query: 335 NEHEWPADAIEVQLAHANG--GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +E L H +G V +YN YL+++R ++ W + Sbjct: 354 ARLGTDPHVVEAVLNHRSGTISGVAAVYNRYAYLNEKRAALETWGKHVTSLA 405 >UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KUI7_METC4 Length = 414 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 93/404 (23%), Positives = 155/404 (38%), Gaps = 26/404 (6%) Query: 1 MLTVKQIEAAKPK-EKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 +LT + +E AKP K + D GLYL V +G K W +RY+ GK + LT+G YP Sbjct: 3 VLTARAVELAKPDPGKRREVPDAALPGLYLVVQPAGGKSWAVRYRAAGKPRKLTLGPYPR 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVG 111 + L +AR+ A TA ++ G DP K+A+ F A+ ++ E + + Sbjct: 63 LGLADAREAARTALHAVAEGRDPAGEKQAARVEVAAVQTMRFGAVAADYIERYAKPRNRS 122 Query: 112 YATELAKMFDD-DILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 + + + D +++ I + + + RGA AN+ F + Sbjct: 123 WRETESFLTRTLDATDKWQEKDVRAIGRKDVRDALDAVVARGASIHANRLFAALRRFFAW 182 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 + G +P L L ++ A KA ++L Sbjct: 183 TVERGILDASPMAGLKPP--SPEISRDRVLTDAELVAVWKAAGEVGYPFGP--VVQLLIL 238 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T R E+ W+ D + TI K + HVVP++ Q V++L + + S Sbjct: 239 TGQRRSEVVEAEWREFDLDGATWTIPRERAKNDRAHVVPLAPQAVKILRCIPCV-GTRSR 297 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGL--------ESGHGFRHEFSTIMNEHEWPAD 342 +F + A ++ + + L H R F++ Sbjct: 298 LLFTTTGETAFSGVSKATDR-LQGLSAKHLPEGIEVEPWRLHDLRRTFASGCARLGVAVH 356 Query: 343 AIEVQLAHANG--GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +E L H +G + G+Y Y D+RR M+ WA LD V Sbjct: 357 VVEKALNHVSGTHSGIVGVYQRHSYGDERRCAMELWAAHLDGLV 400 >UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZM1_SULD5 Length = 416 Score = 243 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 105/403 (26%), Positives = 187/403 (46%), Gaps = 27/403 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLM 58 +LT K+I+ KP++KPY D NGL + + G+K+W+ Y K++ T G YP Sbjct: 8 LLTDKEIKNFKPEDKPYIKSDINGLRILIHPDGRKIWEFVYTSPTLYKKRKSTFGTYPKT 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGY 112 TL+EARDK T I GIDP+ A++ + FS + W++ ++ Sbjct: 68 TLKEARDKRETYLNLIKQGIDPIDAQREEKAEVKLQKESDFSNVVNLWFQSQESHIVHST 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + +FD ++P++ I +I+ +L+++I + + E A + +++++A Sbjct: 128 YKKKRALFDTTVIPVLKHKSIAEIKHDELVQII-KIKAIQTPETAKRLLGYFHDLWQFAC 186 Query: 173 VTGRAKYNPAPDL--ADAMKGYRKKNFPFLPADQIPAFN-KALATFSGSIVSLIATKVLR 229 G +N P++ + KK++ + I ++ T+ G I + A K + Sbjct: 187 THGYCDFNIVPNIHAKSVLPKIVKKHYACITDPSILKQLVNSIYTYGGHISTKNALKFVL 246 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGR--KIHVVPMSDQVVELLTTLSSITKP 287 + LR L S+ W VDFE +ITI MK + ++P+SD+ + +L T Sbjct: 247 HVPLRAGNLVSLKWAYVDFEKHLITIPRKEMKAKSGDDFILPLSDEAIAILQEQYLYTSH 306 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYE-----GLESGHGFRHEFSTIMN----EHE 338 EFVF D I E ++++G+ + H FR F ++++ EH Sbjct: 307 -KEFVF--VADNGLHIDEVTPSRALQRMGFNNETLGNKQRLHSFRATFRSLVDTHQMEHR 363 Query: 339 WPADAIEVQLAHANGGSVRGIY-NHAQYLDKRREMMQWWADWL 380 +A E L H G V Y A Y ++ R ++ WW+ ++ Sbjct: 364 SSYEAKEKVLDHIVGSGVERAYTQKAIYTEEMRLLLTWWSGYI 406 >UniRef50_C3MAV8 DNA integration/recombination/invertion protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAV8_RHISN Length = 429 Score = 243 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 168/411 (40%), Gaps = 38/411 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LTVK IEA K + DG GLYL V +G K W +RY+ GK + +T+G +P ++ Sbjct: 7 LTVKSIEAIKAGSSRREIPDGALQGLYLIVQTTGVKSWAVRYRHAGKPRKMTLGGFPAIS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAK-----KASSNNNSFSAIYKEWYEHKKQVWS-VGYA 113 L +AR++A A + +S G DP K K ++ + A+ E+ V + Y Sbjct: 67 LSDAREEARKALRMVSEGRDPATEKAEQEPKRPAHMDLMPALLDEFVTRHVAVKNRPSYV 126 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 E ++ + ++ P ++ + +L+++ DRG+ AN+ R + F +A+ Sbjct: 127 RESKRIVEKNLKPKWKQKLVKTVTKRDVLKLLDEIVDRGSPIMANRVRALLSKFFAWAME 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 +P + K L ++I LA + K+L TA Sbjct: 187 RDIVDASPVVSIKAP--SEEKTRDRILTDEEIRFLW--LAAEKLAYPFGPVVKLLLLTAQ 242 Query: 234 RTKELRSMLWKNVDFENR--IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE- 290 R E+ LW ++ E + I K +K H VP++ +E++ L I E Sbjct: 243 RRTEVSDALWDELELEGNNQLWVISVDRAKNKKEHFVPLTASALEIIEGLPKIKPAEDEK 302 Query: 291 ----FVFA--------GRNDKKKPICENAVLLVIKQIGYEG---------LESGHGFRHE 329 ++F G + K + + + K+ G + H R Sbjct: 303 AKPIYLFTTTGKTPVSGFSKAKTQLDGEMLAIARKEAEERGEDPEGISIEPWTYHDLRRT 362 Query: 330 FSTIMNEHEWPADAIEVQLAHANGG--SVRGIYNHAQYLDKRREMMQWWAD 378 ++ M P +E L H +G V +YN Y +++R + WAD Sbjct: 363 AASGMARLSVPVHIVEAVLNHRSGSIKGVAAVYNRYDYAEEKRAALTAWAD 413 >UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR9_9PROT Length = 391 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 160/394 (40%), Gaps = 17/394 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 T + I++ +P K + + + G + V +G K + YKI+G++K L+ G YP M+ Sbjct: 3 FTDRSIKSIRPTGKRFEVRETGRTGFAVRVSTTGTKTFVFIYKINGQKKRLSFGTYPAMS 62 Query: 60 LQEARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 L EA A+ ++ G DP K + N + + K + +V + E Sbjct: 63 LNEAHLLYEEAKLELEKGNDPALIKAKKSQLEKNEVTIPELIKLYINQYAKVRKTSW-EE 121 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + DILP + +I + V+ +RGA AN+ +VF YA G Sbjct: 122 DERQLNKDILPRWKNRKAIEINKSDVHAVLDTLIERGAPIGANRLLAVLKKVFNYAKEKG 181 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NP ++ L A++I F L + + A K T R Sbjct: 182 YVTNNPCDEITPP--ATETSRDRVLTANEIKTFWHQLDCTNMHSSTKNALKFQLITLQRR 239 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 KE+ W ++ I A K +K H V +S +LL S +K S F+F Sbjct: 240 KEVALARWNDI--HGDTWVIPAGTAKNKKRHDVHLSQFAKKLLIEAKSYSKD-SPFLFPS 296 Query: 296 RNDKK-KPICENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNEHEW-PADAIEVQLAH 350 K I +A+ +K+ S H R +T + + + + + L H Sbjct: 297 PCGAGSKHIRPDALSKAVKRNMETLMVQDFSPHDLRRTAATFLTKSKIANRLVLSLMLNH 356 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + G SV +Y+ +Y ++++ + W L+E + Sbjct: 357 SQGKSVTAVYDKYEYFTEQQKAWEAWGVKLEEII 390 >UniRef50_B4WZP4 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZP4_9GAMM Length = 400 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 176/392 (44%), Gaps = 13/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + A+P +K Y+L D GLYL V G + W+L Y+ DG+ K++T+G P +TL Sbjct: 3 LTSADVRNAEPLQKDYKLHDDKGLYLLVETDGNRTWKLSYRFDGRSKVITLGPCPEVTLS 62 Query: 62 EARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEH-KKQVWSVGYATEL 116 AR AR+ I+ GIDP+ K + S + +F A+ ++W E + S Sbjct: 63 FARQLRDEARELIADGIDPISRCVKREVFSPSVETFEAVARDWLERVYRLEVSEEQFRRT 122 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + ++ ++ IG + ++ P L + G ++R + ++ +A TG Sbjct: 123 KRQMENYLIASIGKRVVSEVTPEDLKSLAAALGAEGHLDRGKRVLGIGKRIYTHARDTGV 182 Query: 177 AKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 A Y L + G + F +QI + + A K+ + R Sbjct: 183 AGYQQTGALRRRLTGSGTEPEFLLSTREQILDLASGVLGQWSRTTTTAALKLTVWLLARP 242 Query: 236 KELRSMLWKNVDFENRIITIDASVM---KGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 E+ + W ++D + I + G KI VP+ Q VELL + IT E++ Sbjct: 243 SEIVNARWSDMDLDAGEWRIHRNSTGSPTGSKIITVPLPRQAVELLREIEPITGRQ-EYI 301 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 F G D+KK + + + +K++ S R +T + E + A+ I+ QL + Sbjct: 302 FPGTRDRKKHLGASTLSAALKKVTRTTPVSTDNLRTLAATALGELGYQAEQIQSQLLNQT 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 G + YLDKRREM+Q WAD+LD Sbjct: 362 GDEPA---DRQTYLDKRREMLQAWADYLDNTA 390 >UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUK8_9GAMM Length = 446 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 91/414 (21%), Positives = 179/414 (43%), Gaps = 35/414 (8%) Query: 4 VKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMTLQ 61 K I+A K+ Y + GL L + +GK ++ RY GK +T+G YP +L Sbjct: 13 DKFIKAGVSKDTSYPIAGFKGLELRIRPNGKAEFRHRYTHPYTGKRPYMTLGSYPAFSLA 72 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +A+ ++ IDP+ AK+A + +N+F A+ K+W + A + Sbjct: 73 QAKQAYNDNMALLAQTIDPLTHKEQENAKQAYALDNTFEAVAKDWLNEQTNNPDYVRAKQ 132 Query: 116 LAKMFDDDILPI---IGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + P+ G + I I Q+L ++R + + +++ N+ + G +F +A+ Sbjct: 133 TIVNWEYQLKPLIATFGKMPIGSITTPQVLRLLREIQ-KTHIQKGNRVKAIAGRIFAHAV 191 Query: 173 VTGRAKYNPAPDLA--DAMKGYRKKNFPFL-PADQIPAFNKALATFSGS-IVSLIATKVL 228 + G ++NP LA A+K R + P L + K + + + + ++L Sbjct: 192 INGLIEHNPVLQLAGARALKPTRSDHRPALITPAEFAELLKEIDNITNAKLFQKEILQLL 251 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHV----VPMSDQVVELLTTLSSI 284 T +R ++ +M W ++ E ++ + K R V VP++ Q + +L + I Sbjct: 252 ALTFVRIGDVCAMKWADIHLEAKMWVFEPQKGKNRHDMVDCLVVPLAPQTIAILERMHEI 311 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQ--------------IGYEGLESGHGFRHEF 330 T + + G+ K + + ++ GY + S HGFR Sbjct: 312 TGGMEYVFYTGKRKKGQHADPQQINRILNDPSMNKAGMGKNYCGKGYLNVHSPHGFRASA 371 Query: 331 STIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 T++ E + E+Q + YN + +++R +MM WA++LD+ Sbjct: 372 KTLLMERLGYNHLITEIQSGRSMPDVYGNTYNRMEAINERIKMMNDWANYLDQL 425 >UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas putida RepID=B0KFC6_PSEPG Length = 436 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 104/403 (25%), Positives = 178/403 (44%), Gaps = 22/403 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVP------VSGKKVWQLRYKIDGKEKILTVGKY 55 L+ I + K Y D GLYL V S + W+L+Y++ GKE + +G+Y Sbjct: 27 LSDAFIRSLTTSGK-YADGDVPGLYLQVRASLKPGKSPSRHWRLKYRLRGKENVYVIGRY 85 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWS 109 P + L+EAR+ A AR ++ IDP+KAKKA + +F+ + +EW + K Sbjct: 86 PDVGLKEARELARAARNSVANHIDPLKAKKAKIEAQWLNEARTFAYVAEEWMKFKSADLV 145 Query: 110 VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 + ILP IG + +I+ + +I + M A + R + Sbjct: 146 SKSVAGFRGALQNHILPAIGERPVSEIKLEHITAIITELRYKRIMAMARRVRTIIRSILG 205 Query: 170 YAIVTGRAKYNPA-PDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKV 227 +A G + N A + + + + P + + F L + V+ A ++ Sbjct: 206 FAEGRGWVERNVALSNTEELKIRHVVTSNPAIERPADLGKFLLRLDDLNLGSVAY-AMRL 264 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMK--GRKIHVVPMSDQVVELLTTLSS-- 283 L +R EL M W++VD S K + H+VP+ +Q + LL L Sbjct: 265 LVLLPVRPGELVKMRWEDVDLIGADWRYVVSKTKHLDKSKHIVPLPEQALVLLRELHKDR 324 Query: 284 -ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPA 341 + + +VF + I ++L ++++ E + HGFR + TI +EH Sbjct: 325 VVDDAGNGWVFGSPVYPGRSIDATSILKSLQKVWPEYAITAHGFRATYRTIAHEHLGIDP 384 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +E+ L+H G++ +Y AQ L +RRE Q WA++LD+ Sbjct: 385 IVLELSLSHRMPGALGAVYARAQLLSQRREAAQLWANYLDQLR 427 >UniRef50_B3AX37 Site-specific recombinase, phage integrase family n=7 Tax=Enterobacteriaceae RepID=B3AX37_ECO57 Length = 440 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 103/402 (25%), Positives = 169/402 (42%), Gaps = 27/402 (6%) Query: 2 LTVKQIEA-AKPKEKPYRLLDGNGLYLYVPVS-GKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT QI A K E+ DGNGLYL P + W+ RYK GK++ + +G Y ++ Sbjct: 24 LTDIQIRAWIKADERFDGKADGNGLYLCYPKNYTMPFWRFRYKFAGKQRAMVIGSYAELS 83 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK-----------ASSNNNSFSAIYKEWYEHKK-QV 107 L AR+ A +++G D K+ A N S + E++E + Sbjct: 84 LSRARETAKELSARVALGYDVAAEKQERKAEALAKMEAEKNAIRVSELAAEYFERQILPR 143 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 W + L + D DI P IG ++ +D++P + E+++ DRGA A R + Sbjct: 144 W--KHPDILRRRIDKDINPRIGHMKAEDVKPRHIDEMLKAIVDRGAPTIATDVLRWTRRI 201 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSG-SIVSLIAT 225 F Y I + NP + G ++ + +L +++ F +A+ T G S + + Sbjct: 202 FDYGIKRHVLEINPCSAFEVSDAGGKESSRDRWLTREELIRFFQAMRTAKGFSRQNELTF 261 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 K+L +R EL + W+ D +N + + K +P+ V+E L L ++ Sbjct: 262 KLLLALCVRKMELCAARWEEFDLDNAVWHLPEERSKNGDPIDIPLVPPVIEWLKELRVLS 321 Query: 286 KPVSEFVFAGRNDKKKPI-------CENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 S +V R + + I A+ V ++ + H FR T + Sbjct: 322 CN-SAWVLPARKMQHRMIPHIQESTLPVALAKVRAEMPEVPDFTIHDFRRTARTHLAALG 380 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 E L H G V GIYN QY D+R + W + L Sbjct: 381 VDPVVAERCLNHRIKG-VEGIYNRYQYFDERTSALAKWTNLL 421 >UniRef50_Q74H29 Integrative genetic element Gsu32, integrase n=1 Tax=Geobacter sulfurreducens RepID=Q74H29_GEOSL Length = 439 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 99/437 (22%), Positives = 180/437 (41%), Gaps = 60/437 (13%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 + K + A KP+EKPY + +G+G + V SG + + Y DGK + L +GKYP ++L Sbjct: 8 FSDKFLRALKPQEKPYDIREGDGFGVRVFPSGARSFFYMYHFDGKRRFLNLGKYPQLSLA 67 Query: 62 EARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATEL 116 +AR K A + GIDP+ + K+ + + + E+ ++ +V+ ATE Sbjct: 68 DARQKHRDAVSQHAKGIDPLAATQEQKRERREAITVADLIDEYVKNWAKVYKVERSATED 127 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D+LP G + +DI+ + ++ R RG+ +A + +++ +AI Sbjct: 128 ERALSKDVLPYWGKRKAKDIKRTDAIALLERIVRRGSPGQARNILKVGRKMYEFAIERKY 187 Query: 177 AKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NP ++ A+ + L +I A+ +GS + A K++ TA R Sbjct: 188 VEANPFSRISKAVPATMPRTRSRVLTESEIKYIWSAIDKSAGSDETKRALKLILVTAQRP 247 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRK-----------IHVVPMSDQVVELL------ 278 E+ M + +D E TI +K K H V +S +EL+ Sbjct: 248 GEVIGMHRREIDGE--WWTIPPERIKTEKDRTRSNSVGPQPHRVYLSPLALELIGDKDGY 305 Query: 279 ----------------------TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVI-KQI 315 + + + VFAG P+ A++ ++ K+I Sbjct: 306 IFESPRGGAMDSKALSHVVHAAPLVPELVRDTEGHVFAGPCG---PVAAKALMQLLEKEI 362 Query: 316 GYEG--------LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLD 367 Y + H R T M+ P E L H G ++ Y+ +Y Sbjct: 363 AYPDKEKYYGLTRWTPHDLRRTARTRMSAINIPTRHAERVLNHTLPG-IQKTYDLYRYDP 421 Query: 368 KRREMMQWWADWLDEKV 384 +++ + WA +L+E + Sbjct: 422 QKKAALTKWAAYLEELL 438 >UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FR8_THICR Length = 396 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 111/396 (28%), Positives = 175/396 (44%), Gaps = 20/396 (5%) Query: 2 LTVKQIEAAK-PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLM 58 L+ QI A P K L DG GL + + K ++ RY+ ++ K L +G YP M Sbjct: 5 LSDVQIRKAVHPSTK--SLSDGKGLSIEIMPK-AKRFKFRYQRPVNKKINNLVLGYYPSM 61 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 +L+ AR+ A R+ + GIDP + SS F I + + + K WS + Sbjct: 62 SLKAAREIAQQYRELLKKGIDP--KYQTSSEKVDFDHIIQLYLKKGKADWSEKHFNTTKG 119 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 +++ + G + I + ++ G+ A K + A + G K Sbjct: 120 RYENFLKNPFGNRDAAQITSFDIYNLLESVAQSGSYGTAEKLSYIISGAYSQAAILGMVK 179 Query: 179 YNPAPDLADAMKGYRK----KNFPFLPADQIPAFNKALATFSG----SIVSLIATKVLRY 230 +NPA + + +K +F + + L +I A + Sbjct: 180 FNPAAGVMKQVTKTKKTQQMPHFNLTRKGESERLGRFLNDIKALNKTNIAVKTALLLSPL 239 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVM-KGRKIHVVPMSDQVVELLTTLSSITKPVS 289 +R+ L S+ ++ D +N+ + I+A M K +VP+S Q + LL TL + TKP Sbjct: 240 LFMRSGSLASLKLESYDKDNKWLLINAEDMKKDHSDFIVPLSTQAINLLETLIAATKP-K 298 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQL 348 +VF R K I A+ + G+ + HG RH +T + E + + E+QL Sbjct: 299 IYVFESRASKLGHIRIEAINKAKSRSGWRFDDVTIHGLRHTATTYLTEIGFDYEVTEMQL 358 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H G VRGIYN A +LDKRREMMQ WAD+LD Sbjct: 359 HHKLVG-VRGIYNKAMHLDKRREMMQKWADYLDNLR 393 >UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8P5_PROMM Length = 422 Score = 241 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 110/419 (26%), Positives = 184/419 (43%), Gaps = 35/419 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPV---SGKKVWQLRYKIDGKEKILTVGKYPL- 57 LT +++ + K K Y G+ LY+ V SG K + + + +GK+ + +G + Sbjct: 3 LTEREVRSLSVKSKRYSRSVGDSLYVLVEPVKGSGGKSFVGKMRSNGKQIDVRIGVFGKG 62 Query: 58 ---MTLQEARDKAWTARKDISV-GIDPVKAKKASSNN-------NSFSAIYKEWYEHKKQ 106 TL+ ARD+ + R G DP + +K + + + + K Sbjct: 63 PGQWTLKAARDEWFRLRSWYRETGRDPRELQKDEKRQLAKQSSDQTLNELVDSYLIACKT 122 Query: 107 VW--SVGYATELAKMFDDDILP-IIGGLEIQDIEPMQ----------LLEVIRRFEDRGA 153 + S + ++I+P + G + + + + E+ E RG+ Sbjct: 123 KYKQSETTIKDKKNKLSNEIIPALGGSTPVSRLGWDEKSKGRTGREAVFEITDSIEKRGS 182 Query: 154 MERANKARRRCGEVFRYAIVTGRAKY--NPAPDLADAMKGYRKKNFPFLPADQIPAFNKA 211 + +A K +F YAI G + NPA G+ ++ P L D++P Sbjct: 183 LNQARKVLGVMRHLFDYAIERGWMERGQNPAVQARSVGAGHEVQHNPCLSWDELPQLLDD 242 Query: 212 LATF--SGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVP 269 L +GS V L A K+ T LR L M W VD+ + T+ S MK K H VP Sbjct: 243 LNRNKGNGSQVVLAAIKLDLMTFLRVGSLVPMRWDEVDYAANLWTVPGSRMKSGKNHWVP 302 Query: 270 MSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIK-QIGYEGLESGHGFRH 328 ++D + +LL L I ++ R K I E+A+ +K ++GY G ++ HG R Sbjct: 303 LTDPIKDLLAHLRKINGDQDYVFWSPRGRSKPHIDESALNQHLKVRLGYGGRQTAHGLRS 362 Query: 329 EFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD-WLDEKVE 385 T E ++ A+ I+ Q+ HA G VR Y+ +Q LD+R + M+ W D LD+ +E Sbjct: 363 LPLTAGQEVLKFSAEVIQRQMDHAVGDKVRQAYDKSQLLDERWKFMRAWCDALLDQGLE 421 >UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1ATP4_PELPD Length = 449 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 81/425 (19%), Positives = 169/425 (39%), Gaps = 49/425 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 T I KP E Y +GNG + V SG K W Y DGK + + +G YP +TL+ Sbjct: 14 FTDTMIRKLKPTESDYTRSEGNGFTIRVMPSGSKTWLYLYAFDGKRRKMNLGSYPDVTLE 73 Query: 62 EARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 AR + A++ + IDP+ + + + + + ++ E + + +A + Sbjct: 74 TARGRFEDAKRKVKNNIDPMAEAEEQAEERRKAPTVADLVHDYIERHAKRFKRSWAKD-E 132 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ + +++P G + D+ +L ++ +R A AN + ++F +A+ Sbjct: 133 QILNREVVPAWGKRKAADVTKRDILRLLEEIVNRNAPAMANNTFQIIRKMFNWAVEQDIL 192 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV--SLIATKVLRYTALRT 235 ++ P + + + L +I + L + A +++ TA R Sbjct: 193 QHTPCTGVK--LPSPKLSRDRVLSESEIKTLWENLGRPDAGMSDGVRRALRLILTTAQRP 250 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK--------- 286 E+ + +D TI A K K H V +S +E++ + K Sbjct: 251 GEVTGLHTSELD--GCWWTIPAERAKNGKTHRVYLSGLALEIINQAIAQAKKSRETPYDQ 308 Query: 287 PVSEFVFAGRNDKKK-PICENAVLLVI--------------------------KQIGYEG 319 + +VF + K+ P+ + A+ + + ++G + Sbjct: 309 EYNGYVFPCHHKSKEKPMGDTALAVAVGRALASPLTDDKGNPLFTAAGKPATENRLGIDH 368 Query: 320 LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADW 379 + H R +T M + + I+ L HA G ++ +YN +Y ++++ ++ W + Sbjct: 369 F-TPHDLRRTTATFMASMGFMDEVIDAVLNHAKQGVIK-VYNQYRYDVEKQQALETWENK 426 Query: 380 LDEKV 384 L + Sbjct: 427 LKTIL 431 >UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JEM3_OLICO Length = 390 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 173/393 (44%), Gaps = 24/393 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 L+ +I+A KP DG+GL++ V +G + W Y+ + + +G Y Sbjct: 6 LSETKIKAI---SKPGIYGDGDGLFIRVQKTGSRNWLFVYRRGQQRNEIGLGGYGQGTAP 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATEL 116 ++L AR+KA R+ ++ G DP ++ A +F + ++ K+ W + +A + Sbjct: 63 VSLPLAREKADAIRQQLARGEDPRASRNAI-KPKTFGEVMEQLLTAKESEWTNPKHAEQW 121 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG- 175 P+ L + DI + + I E A + R R V YAI Sbjct: 122 KMTLRTYAKPLHR-LPVADIVMGDVKDCILPHWAE-RPETAARLRSRIQAVIDYAIAHEW 179 Query: 176 RAKYNPAP--DLADAMKGYRKK----NFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 R+ NPA L + + R+K + L P +AL SG+ A + + Sbjct: 180 RSAGNPARWGGLLEKVMPKRQKLSRGHHAALAYADAPQTIEALRHSSGTAAR--AVEFIA 237 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 T R+ E R + VD + + T+ A MK K H+VP++ + ++++ + + Sbjct: 238 LTVARSGEARYSTFAEVDVKAKTWTVPAERMKAGKEHIVPLTARALQIVEAMRQ--RATG 295 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQL 348 +++F G D K PI + A++ ++ + + HG R F + ++P D E+ L Sbjct: 296 DYIFGGAQDSK-PISDTAMVKALRLASPDKAATLHGLRSTFRDWAGDKTKFPRDIAEMAL 354 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AHA G Y + L +RR++M W +L+ Sbjct: 355 AHAVGDETERAYRRSTALAQRRKLMDAWERYLN 387 >UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UFB2_9BURK Length = 431 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 101/397 (25%), Positives = 172/397 (43%), Gaps = 24/397 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKIL-TVGKYPLMTL 60 LT Q+ A +P+ Y + DGNGL + V +G KVW+ RY ++GK + L T+G Y +++L Sbjct: 36 LTESQVRALEPRAARYSVADGNGLVIEVMTTGTKVWRFRYSLNGKRQPLATIGDYRMISL 95 Query: 61 QEARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 + AR KA + ++ GI PV + + A + + + + + S Y Sbjct: 96 RVARAKAQKYAELVAQGISPVATARRDRGAEAKADVLREAAELYMATEMAGKSDEYRRTT 155 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D D+LP IGGL ++ + ++ + + RG+ + A R ++ Y I Sbjct: 156 RRALDKDVLPAIGGLPVKSVTAQHVVAICDSIKSRGSPKMALHTRNVIKRLYEYLIARQL 215 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 A NPA + + L D+I A A+ T S IA +L T +R Sbjct: 216 ATANPAQVVPARSIATFESRTRVLSGDEIGATLHAIDTSSIRRPLKIALHLLVLTMVRKS 275 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 +L W+ D E I A+ +K +V + Q V LL L + + FVF Sbjct: 276 DLVESTWEEFDLEKASWRIPAARLKQDADQLVYLPQQAVTLLRELHR-ARAATRFVFPSV 334 Query: 297 NDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 +PI ++ + +K +G + H FR S + E HA Sbjct: 335 RGDDRPIAKSTLNQAVKALGLDVEHFVLHDFRRTASVHLREMA----------RHAQEDK 384 Query: 356 VRG-IYNHAQYL------DKRREMMQWWADWLDEKVE 385 HA+++ + R++ Q WAD++D +++ Sbjct: 385 SSAQTRQHARHVEAASAAAEARQIAQRWADFVDARLD 421 >UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteria RepID=B8GZR1_CAUCN Length = 517 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 111/425 (26%), Positives = 174/425 (40%), Gaps = 54/425 (12%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ K DG GLYL V G K W RY + G+ + + +G ++L Sbjct: 93 LTALEVKRL---AKVGMHPDGRGLYLQVHNGGSKSWIYRYTLKGRVRAMGLGPTHRVSLA 149 Query: 62 EARDKAWTARKDISVGID------------------PVKAKKASSNNNSFSAIYKEWYEH 103 EAR +A AR G+D + + +F + Sbjct: 150 EARAQAQAARLLRDQGLDPIAARAAATPPPEPPSPPKTREIAVAEAGLAFKDAAAAYIRT 209 Query: 104 KKQVW-SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR 162 W + + + + P+ G + +I+ +L V+ A E A++ R Sbjct: 210 NSAAWRNAKHQAQWSATLATYAYPVFGDRPVSEIDTAMVLSVLEPIWSTKA-ETASRLRG 268 Query: 163 RCGEVFRYAIVTG-RAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALAT 214 R V +A V G R NPA L K R ++ LP IPAF + L T Sbjct: 269 RIEAVLDWASVRGHRQGENPARWKGHLDKILPAKSKIARVEHHAALPFSTIPAFMRDLGT 328 Query: 215 FSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQV 274 G+ A + TA RT E+ W +DFE R+ T A K RK H VP+ D Sbjct: 329 RPGAAAR--ALEFAILTAARTGEVIGAQWSEIDFEARLWTQPAERTKTRKEHRVPLCDAA 386 Query: 275 VELLTTLSS--ITK----------------PVSEFVFAGRNDKKKPICENAVLLVIKQIG 316 + +L ++ +T P+ F+FAG + K + A+L ++++G Sbjct: 387 MAILASMREAFLTGRREFLLLYNKPVPDDMPLEGFIFAGMR-RGKGLSNMAMLKTLERMG 445 Query: 317 YEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQW 375 + L + HGFR F E + + +E+ LAHA G V Y L+KRR++M+ Sbjct: 446 HPDL-TTHGFRSTFRDWAAETTGYQNEVVEMALAHAIAGKVEAAYRRGDLLEKRRDLMRD 504 Query: 376 WADWL 380 WA + Sbjct: 505 WAAYC 509 >UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KC37_9RHOB Length = 385 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 143/388 (36%), Gaps = 19/388 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT I AKP +K Y L D + GL L V SG K W + + +G+ T G+YP +T Sbjct: 9 LTELAIRKAKPADKRYDLFDASVRGLGLRVATSGTKSWFMMRRFNGRMLRTTFGRYPDLT 68 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L AR KA D+S G+ + + F + EW KK ++ Sbjct: 69 LANARLKAPNVLADMSDGL-----TQGQRKTDLFKVVLDEWL--KKDQAKNKSVHQVRVA 121 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 LP G + + I + +I + D G+ AN+ F + + Sbjct: 122 MYKHALPAFGPMPVASITKRDVNRLIDKIVDAGSPVAANRVLAFTKRFFSWCKERDILEL 181 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 +PA + K L ++I F A ++L T R +E+ Sbjct: 182 SPAEAIRPP--SKEKTRDRVLTLEEIKGFWAACDQMGYPWGP--IFQLLLLTGARLREVS 237 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 W V + + + A K + H + +SDQ + ++ L + F G Sbjct: 238 QASWGEVSIADGTLNLPARRTKNGRAHQIQLSDQAINIIQALPKVEGQDLIFTTNGTTAV 297 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGS--V 356 + V + I H R F+T E + L H G V Sbjct: 298 SGF---SKVKKRLDIISGVADWRFHDLRRSFATHSTERLGISPVVADKILNHVTGQVRGV 354 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDEKV 384 IY H +YL++RR +Q W +++ + Sbjct: 355 AAIYQHGEYLEERRASLQKWGNFIQGLI 382 >UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q013_9GAMM Length = 455 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 97/407 (23%), Positives = 167/407 (41%), Gaps = 27/407 (6%) Query: 3 TVKQIEAAKPKEKPYRLLDGNG--LYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLM 58 + + I + K + K Y + LYL V + K W RY GK + ++ G YP + Sbjct: 9 SDRSISSHKAEAKEYLVPVKGRPKLYLMVRPNETKSWLFRYTSPNTGKSQRISFGIYPSI 68 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGY 112 TL A D + +S IDP +KA +F E+++ K + Sbjct: 69 TLARAHDIWQEYQDLLSKNIDPRDNRKAVKQALLENDDRTFGRFADEYFDTLKTILKPNT 128 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFE------DRGAMERANKARRRCGE 166 + I +I P Q+L ++ + D E+A + + Sbjct: 129 LQRKLNCLKL-LKDSFAETPIDEITPPQMLSMLIDVQNQFVKADGKPTEKAERCASIASD 187 Query: 167 VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSI--VSLI 223 +F+YA G +PA + + + P + D+ + + + + + Sbjct: 188 IFKYASARGFCSTDPASMVKSQLIKPVYGHRPAIIQPDKFAKLLQDIDSLKDKVDSNTNS 247 Query: 224 ATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVELLT 279 + ++L +R +LR M W ++DF +G+ + VVP+ Q +E+L Sbjct: 248 SLRLLPMLFVRNGDLRRMRWADLDFNEAKWRFQPLKGEGKEHMVRDMVVPLPRQAIEILQ 307 Query: 280 TLSSITKPVSEFVFAGRNDKKKP-ICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-H 337 I SEFVF + KK I +N +K++GY+ + HGFR T++ E Sbjct: 308 HQYKINGH-SEFVFYSPSAKKNGIISDNTANKHLKELGYQNVHCVHGFRASAKTMLQEQL 366 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ++PA +E+ L H Y ++L+ R EMMQ WAD+LD Sbjct: 367 KYPAVIVEMGLGHITKDQNGTAYGRFEFLEDRAEMMQTWADYLDALR 413 >UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=Q8DF52_VIBVU Length = 452 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 107/428 (25%), Positives = 186/428 (43%), Gaps = 55/428 (12%) Query: 9 AAKPKEKPYRLLDGNGLYLYVP----VSGKKVWQLRYKID--GKEKILTVGKYPLMTLQE 62 + + +K + DG+ LYL + KK WQ Y K LT+G YP +TL++ Sbjct: 15 SLQDGKKEQLISDGDNLYLRLRLGKNKKTKKSWQFNYHHPLTKKRIKLTIGNYPALTLKD 74 Query: 63 ARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHK-----KQVWSVG 111 AR KA + + IDP + ++ + F + ++W+E K K+ Sbjct: 75 ARKKAENYLELLEKNIDPQEYERTGGINAIDPDKRLFKDVAEKWFEEKILAEDKKKRQEK 134 Query: 112 -----------------------------YATELAKMFDDDILPIIGGLEIQDIEPMQLL 142 Y+ ++ D+ ILP +G + I +E Sbjct: 135 IDDANKRAKDEGREKASEQELEAVLRDIRYSKDIRGRLDNHILPALGNIPITKMETYLAQ 194 Query: 143 EVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPA 202 E ++ +G +K + V YA G K NP DL++ RK+ P + Sbjct: 195 EALQPSYAKGI--NMDKICQISSRVMGYAKKLGYMKSNPLSDLSEVFVNKRKQKQPSIKP 252 Query: 203 DQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKG 262 + + KA+ + + V+ ++ +T R E+ M W VDFEN +I I + MK Sbjct: 253 EGLSELMKAMGERNITKVTRAGFEMQMHTLARASEIAKMRWDEVDFENNLIKIPSYRMKR 312 Query: 263 RKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLES 322 H +P++ LL L + + A + + + ++ +K+ G++G Sbjct: 313 LNEHFIPLTKYTRGLLEYLKPFSSHLEYVFPADPRSSRPHMNQQSINANLKRAGFKGELV 372 Query: 323 GHGFRHEFSTIMNEH-------EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQW 375 HGFRH ST +N+ ++ AD IE LAH + +R IYN A+Y++ RRE++++ Sbjct: 373 SHGFRHMGSTFLNDSKKYGANEKFDADVIEACLAHCDNDKIREIYNSAEYIEMRREILEF 432 Query: 376 WADWLDEK 383 W D++ E+ Sbjct: 433 WGDYIVEQ 440 >UniRef50_B9R123 Site-specific recombinase, phage integrase family protein n=3 Tax=Alphaproteobacteria RepID=B9R123_9RHOB Length = 451 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 98/415 (23%), Positives = 176/415 (42%), Gaps = 43/415 (10%) Query: 2 LTVKQIEAAKPKEKPY----RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 LT +++ K + + +GL + + SG K W LR + K + + +G YP Sbjct: 29 LTPLEVKRLKNSGRGGNELHFVGGVSGLAIQLLSSGGKTWILRTTVGYKRRDIGLGGYPD 88 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNN--------SFSAIYKEWYEHK-KQVW 108 ++L +AR++A ++ I G+DP++ +K+ + SFS + K ++ Sbjct: 89 VSLAQARERARETKELIRQGVDPIEHRKSLQSQLVASQMRGLSFSDAVDRYLSVKSAELR 148 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + + + A LP +G + + +I +L V++ E A++ R R V Sbjct: 149 NEKHKEQWASTLQTYALPHLGKMLVDNITTQDILLVLQPIWTD-KTETASRLRGRIEAVL 207 Query: 169 RYAIVTG-RAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV 220 ++ V+G R NPA L K + N+P + + ++ + L G+ Sbjct: 208 SWSTVSGHRTGENPARWAGNLKELLPSPSKIAKSGNWPAIALVEADSWFEGLRLRDGTAA 267 Query: 221 SLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTT 280 A + L A R+ E+R W +D + + I MK K H VP+S + LL Sbjct: 268 R--ALEFLALCASRSGEVRKATWSEIDHKQKTWVIPGERMKVGKDHRVPLSATALALLDA 325 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQI-------GYEGLE--------SGHG 325 L + S F+F P+ + A+ V++++ G G HG Sbjct: 326 LPK--REDSPFIFPAPRGG--PLSDMALSAVMRRMHSVELDNGRPGWRDPRNGHPAVPHG 381 Query: 326 FRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 R F E + D E+ L+H+ G V Y + +++RR MM WA++L Sbjct: 382 LRSTFRDWAAESGFARDMAEIALSHSVGSEVERAYRRSDLIERRRGMMSAWAEFL 436 >UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus RepID=C7JFF4_ACEP3 Length = 434 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 96/398 (24%), Positives = 166/398 (41%), Gaps = 25/398 (6%) Query: 5 KQIEAAK-PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMTLQ 61 Q+ A K + K L DG GL+L V G ++W+ R+K + GK + +++G ++L Sbjct: 42 NQLSALKVSRHKSGDLCDGGGLWLVVT-GGSRLWEFRFKSPVTGKRRQMSLGSAYSLSLA 100 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSV-GYAT 114 +AR+KA R +DP+ KA + +F+ + ++ + + W Sbjct: 101 DAREKAAKCRGMTENRLDPIIEREKEKAARELEKGLTFAEVAAQYIKAQTPAWKDHRSPA 160 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA-IV 173 + PI G ++D++ +L +R E + + R R + YA + Sbjct: 161 VWTSSLTQHVFPIFGEKSVRDVDTQDVLTALRPIWTE-KTETSGRIRGRIERILDYARVQ 219 Query: 174 TGRAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 R NPA L K + ++ I KAL + +G ++ A + Sbjct: 220 QWREGENPARWRGHLSVMLPAPSKITKVQHHKAAEWKDISEIMKALQSING--MAAKAVR 277 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA R+ E+R+ +W +D + + A MK + H VP+S V++L + Sbjct: 278 FCCLTAARSGEVRNAVWSEIDLSEALWVVPAEKMKAGREHRVPLSGDAVKVLQEVLPHRD 337 Query: 287 PVS-EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAI 344 VS + +F G + +P+ + AV + + HG R F E + + Sbjct: 338 AVSGDLLFPG-AKRGRPLSDVAVSKALHHAAGTKEVTVHGLRSTFRDWAGETKVCSREVA 396 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 E LAHA V Y + LD RR +M+ WA E Sbjct: 397 EAALAHAGKSKVEAAYFRSDLLDLRRPLMEEWAAQCRE 434 >UniRef50_B8IIS8 Integrase family protein n=9 Tax=Alphaproteobacteria RepID=B8IIS8_METNO Length = 420 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 97/394 (24%), Positives = 173/394 (43%), Gaps = 25/394 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ ++++ +P R DG GLYL V +G K W Y++ G+ + + +G + L Sbjct: 20 LSARRVQTL---TEPGRHADGGGLYLVVDPAGGKRWVFLYRMAGRRREMGLGPVLSVPLA 76 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVW-SVGYAT 114 AR+ A AR ++ G+DP+ A++A + +F+ + + + +++ W + + Sbjct: 77 RARELAAEARAQVAGGVDPIDARRAPPSDEPPPHRITFAEVAEVYMTDRERAWRNAAHRR 136 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + + + + + + D+ +L V+R A E A + R R + A V Sbjct: 137 QWRQTLEVQAASLW-AMPVADVNTEAVLAVLRPIWHSKA-ETARRLRGRIERILDAARVA 194 Query: 175 G-RAKYNPAPD------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 G R NPA L ++ + LP ++PAF + A ++ Sbjct: 195 GHRGPENPARWKGHLDVLLPRAGKLQRGHHNALPYMEVPAFVAEIRQREAQTAR--ALEL 252 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 L TA R+ E+R M W VD + T+ MK ++ H VP+ + VE+L+ L Sbjct: 253 LILTAARSGEVRGMTWAEVDLVGALWTVPKERMKAKRPHRVPLCARAVEILSKLHLEAPD 312 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPADAIEV 346 +F RND + + ++++ Y + + HGFR F E + P + IE Sbjct: 313 AEGLIFPSRND--TVLSDMVFAALLRRAKYPDI-TAHGFRSSFRDWAADETDHPREVIEA 369 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 LAH G + Y L KRR +M W ++ Sbjct: 370 ALAHMVGDATERAYRRGDALAKRRLLMDDWGAYV 403 >UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodobacter sphaeroides RepID=Q3J1E6_RHOS4 Length = 413 Score = 238 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 159/407 (39%), Gaps = 31/407 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 L+ +E KP +K + D GLYL V +GKK WQ+RY+ G + +++G +P+++ Sbjct: 3 LSAAGVEKIKPTDKRQEIPDSLCVGLYLIVQPTGKKGWQVRYRHGGVHRRMSLGAFPVLS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYA 113 L AR++A S G DP KA+ + + + ++ K+ + + Sbjct: 63 LAGARERARQTLAAASAGTDPAAEVKAAKAPKLDGDRDKIKTLIGQF--DKRHLSKLKSG 120 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + + ++ G ++ I +++++ D G + AN+ R + F + + Sbjct: 121 AVVRRELERHVVSAWGERDVHQIGKRDVIDLLDGIADSGRVVTANRVRAYLAKFFGWCVE 180 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 +PA + A G L D+I F A KVL T Sbjct: 181 RDILATSPAAGVKPA--GKETSRARVLTDDEIRWFWTACEAEGFPWGPFG--KVLLLTGQ 236 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E+ M + + + A K + H VP++ V L + +T F Sbjct: 237 RLNEVAQMTDSEI--RGDLWHLTADRTKNGRAHDVPLTGAVRAALDEVERVTDEEGRVRF 294 Query: 294 AGRNDKKKPIC----------ENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNEHEWP 340 + P+ E V + K+ G + H R +T M P Sbjct: 295 IFTTTGRTPVSGFFKARAVLAEAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMARLGIP 354 Query: 341 ADAIEVQLAHAN--GGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 E L H + GG + +Y Y D++R+ ++ WA ++ VE Sbjct: 355 VRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRQALEAWARFVLSLVE 401 >UniRef50_B5QDA8 Phage integrase family protein n=1 Tax=Salmonella enterica subsp. enterica serovar Virchow str. SL491 RepID=B5QDA8_SALVI Length = 403 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 150/386 (38%), Gaps = 12/386 (3%) Query: 2 LTVKQIEAA--KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 L ++ KP + P + DG GL + + G +Q RY+ +GK L +G Y M+ Sbjct: 3 LNDTKLRRIDGKPYDGPVEIPDGGGLSVRISPKGLITFQYRYRFNGKPVRLKLGVYGSMS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNS----FSAIYKEWYEHKKQVWSVGYATE 115 ++EARD +K +S G +P +K + + + EW + V Y Sbjct: 63 IKEARDAVEVCKKWLSEGKNPAVYRKLDKKKKTESPDIATLVNEWLDTPSAKDLVKY-EY 121 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 +M + + G L + D++P ++ G+ +A + +V +YA+ Sbjct: 122 WKRMLKLHVTDLYGQLIVDDMDPTHWEKIFLAITKSGSPVQAGNVLVKMKQVIKYALRRK 181 Query: 176 RAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 R N L G + FL +I F A+ S + + ++L T R Sbjct: 182 RITSNSLMLLELTDVGKLPEDGERFLNDVEIGKFWLAIDKTRMSWQNKMVMRLLLLTGCR 241 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR + D E R+ I K RK V +S+ VE L + + S Sbjct: 242 GVELRLARKVDFDLEGRVWVIPKENSKTRKRFVRGLSELSVECLKQVFEVYPGNSIVFPP 301 Query: 295 GRNDKKKPICENAVLLVIKQ---IGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 + +P+ ++ + +Q + S H R T M E E L H Sbjct: 302 ATLQEDRPMAAGTIISLAEQVETMMDCPHWSAHDLRRTCKTKMAELGVAPHVSEKILGHK 361 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWA 377 G + +Y+ Y+ +++E WA Sbjct: 362 LTGML-AVYDQYDYIPEQQEAADKWA 386 >UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobiales RepID=A6U968_SINMW Length = 391 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 104/396 (26%), Positives = 173/396 (43%), Gaps = 26/396 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYP---- 56 +LTV +I+ + PK K L DG+GL+L+ SG + + Y G+ + + +G Y Sbjct: 5 LLTVTEIKNS-PKPK---LRDGDGLWLHTSSSGNRHFVFIYIRHGRRREMGLGTYGTGTG 60 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKA---KKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 ++L AR KA R + G DP ++ +F + + + W Sbjct: 61 QVSLAAARTKAEEIRTILGRGGDPFTEMGERQEKVKPTTFGQCADDLVDAMESQWRNEKH 120 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 +M + I L + ++ ++ V++ A E A++ R R +V +A V Sbjct: 121 RAQWRMTLTEYAKAIRKLPVAEVTTDDVVRVLKPIWSTKA-ETASRLRGRIEKVLDHAKV 179 Query: 174 TG-RAKYNPAP------DLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 G R NPA + ++ + +P +PAF K + SG V A + Sbjct: 180 RGLRTGENPARWKGHLDHILPKAGKLKRGHHAAMPYADVPAFIKKIREASG--VGARALE 237 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA RT E W DF + T+ A MKG + H VP++D+V+ +LT + + Sbjct: 238 FTILTASRTGETMGAKWAEFDFRENVWTVPAERMKGGREHRVPLTDRVLAVLTEMKK--R 295 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPADAIE 345 V++FVF G + PI + V+K + + HGFR F + E E+ + E Sbjct: 296 SVNDFVFPG-SKANTPISNMTMTKVMKTYEADAF-TVHGFRSAFRDWASEETEFQGEVAE 353 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 LAH G Y L+KRR++M+ W + + Sbjct: 354 AALAHITGDETERAYRRGDVLEKRRKLMEAWETYCE 389 >UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria RepID=B4SNF6_STRM5 Length = 397 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 106/395 (26%), Positives = 173/395 (43%), Gaps = 27/395 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ +P DG GLYL V S K W RY+ +GK + +G ++ L Sbjct: 8 LTARRVATI---TEPGYHPDGGGLYLQVTASCAKSWVFRYRFEGKRPEMGLGPLHVIGLA 64 Query: 62 EARDKAWTARKDISVGIDPVKAKK----ASSNNNSFSAIYKEWYEHKKQVW-SVGYATEL 116 EAR+ A ARK + G DP+ ++ A+++ +F + ++ W + +A + Sbjct: 65 EAREAAGAARKMVQSGQDPLAGRRAAAVATASIPTFWEAATAYIAEREAGWTNPKHAGQW 124 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR-YAIVTG 175 + + P++G L + IE +L V+R E A++ R+R V + Sbjct: 125 TRTLETYAKPVLGDLRVDRIETEHVLAVLRPIWT-TKTETASRVRQRMEAVLDAVTVQKK 183 Query: 176 RAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 R+ NPA L + +NF LP ++P+F AL + G A + Sbjct: 184 RSGENPARWRGHLAVILPKPTAVTKVENFAALPYAELPSFMAALRSRHGEAAR--ALEFT 241 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 TA RT VD T+ S MK + H VP+S + L Sbjct: 242 ILTAARTGMTLGATPGEVDLAAGTWTVPGSRMKAKVEHTVPLSTPALALARPRIK----- 296 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQ 347 + +F +P+ ENA+L ++K++GY G + HGFR F +E ++P D E Sbjct: 297 RDLLFPNDLS-NEPLSENAMLALLKRMGY-GYITVHGFRSTFKDWASEMTDYPDDLSEAA 354 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH + Y + KRRE+M WA++ + Sbjct: 355 LAHRIRDKAKAAYKRGTMIQKRRELMNSWAEYCAQ 389 >UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacteraceae RepID=Q3J2T0_RHOS4 Length = 439 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 102/417 (24%), Positives = 171/417 (41%), Gaps = 50/417 (11%) Query: 8 EAAKPKEKP-YRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEAR 64 AA P + G GL L + +G K W LR + G + + +G YP + L EAR Sbjct: 15 RAAHPGDGANVWHAVGGVAGLLLQITPTGAKSWLLRTTVAGTRRAMGLGSYPEVGLAEAR 74 Query: 65 DKAWTARKDISVGIDPVKAKKASSNNN--------SFSAIYKEWYEHKKQVWSVGYATEL 116 ++A A++ I+ G+DP++ +KA+ +F+ +W + K + Sbjct: 75 ERAREAKRKIAAGVDPIEERKATRAALAAAQRRSLTFADAADKWIKAKLSDRPEKSQKAV 134 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG- 175 P IG L +Q++ P ++ + + A K R + +A V+G Sbjct: 135 RATLTAYSFPEIGALTVQELTPQDVVRALNTIWTA-KPDTATKMRGYLEAILSWATVSGY 193 Query: 176 RAKYNPAP---DLADAMKGY------RKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 R NPA +L + + R NFP +P ++ + + L G + A + Sbjct: 194 RTGDNPARWAGNLKELLPAPSVVAKGRAGNFPAVPVARLADWWEELGQREGMGAT--ALR 251 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA R+ E+R LW VD + + + + MK + H VP+S V LL L + Sbjct: 252 FAALTAARSGEVRGALWSEVDLDAALWVVPGARMKMGREHRVPLSGPAVALLRGLPRLAG 311 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQI------------------GYEGLES-----G 323 + +F G + + +V V++++ G+ + Sbjct: 312 -TGDLIFPGPRGG--ILSDMSVSAVMRRMQEDAETEAKMAGRPVSAAGWRDTRTGRPAVP 368 Query: 324 HGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 HG R F E + D E+ LAH G V Y + L++RR MM+ WAD L Sbjct: 369 HGLRSSFRDWAAEVGYDRDMAEIALAHLVGSEVERAYRRSDMLERRRAMMERWADVL 425 >UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP99_HAHCH Length = 416 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 84/401 (20%), Positives = 163/401 (40%), Gaps = 21/401 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVS-GK--KVWQLRYKID--GKEKILTVGKYP 56 L+ +I AK E L DGNGL L + GK + W RY+ K L++G YP Sbjct: 4 LSDTKIRNAK-TETDTCLSDGNGLSLRIYPKRGKIARTWVFRYRRPATKKPAKLSLGDYP 62 Query: 57 LMTLQEARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKK--QVWSV 110 +++L+ AR +A R+ + G+DP + + ++N + +++ W +K + + Sbjct: 63 VISLRAARQQAEIMRQQLFEGLDPQYVQKEQRAENANAITTQQLFESWLTLQKSAKEVTD 122 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 + + + +G L + + Q+ V+ +G E K +FR+ Sbjct: 123 RTLADHEARWRVHLEKSLGPLLAKHVIRRQIAAVLDSMVAKGIKEETRKCLCLLKMLFRF 182 Query: 171 AIVTGRAKYNPAPDLADAMKGYRK--KNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 A K NP L+ LP ++ +F + L + S + + A K+L Sbjct: 183 AEERHLIKENPIEGLSAKSFKITAGAPRDRALPLSELRSFWRLLDSASITPATANAFKLL 242 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 T R E+ M W +D + + K RK H + + + + L+ ++ I+ Sbjct: 243 ILTGARRGEVTMMRWSELDLTQGMWVLPPERTKNRKAHTLYLPNLAMRLIESMRPISGHG 302 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYE----GLESGHGFRHEFSTIMNEH-EWPADA 343 + G + P+ + + ++++ + H R +T EH + Sbjct: 303 EYVLSLG--NGITPLSTEGLTVTLRRLSTRLESVPHFTVHDLRRSAATAWGEHLKTSPHV 360 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 IE L H + Y A Y+D+++ + W + ++ V Sbjct: 361 IEKMLNHQPRDRLVATYQRAAYIDEQKMAWKAWGEMVENHV 401 >UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SXW8_POLSQ Length = 434 Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 97/406 (23%), Positives = 168/406 (41%), Gaps = 41/406 (10%) Query: 16 PYRLLD--GNGLYLYVPV---SGKKVWQLRYKIDG--KEKILTVGKYPLMTLQEARDKAW 68 P D GLY+ V + K+ W RY K + + +G +L +AR K Sbjct: 20 PGYHADPESKGLYIQVSKGVNNFKRSWIFRYTSPTLFKRREMGLGSLEARSLADARRKTL 79 Query: 69 TARKDISVGIDPVKAK--------KASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKM 119 R+ + GIDP + + A +N +F + E +K W S +A + Sbjct: 80 ELRQLVMDGIDPTEDRCKAKSKRITAINNGITFKEAAERCIEGRKAEWKSSKHADQWRNT 139 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRG-----------AMERANKARRRCGEVF 168 P IG L + I + +++ + E A + R+R +F Sbjct: 140 ISTFAYPEIGELRVDQINTSHIAKLLEQEIKNKNGTVEGTFWNVRTETATRVRQRIEVIF 199 Query: 169 RYAIVTGRAKYNPAPDLA--------DAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV 220 + K + L A K +K + P LP +I F K L +G Sbjct: 200 DWCKAHEYIKGDNPARLKGALGHLLPKAKKIQKKSHHPALPFQRIGEFVKDLREHNG--Y 257 Query: 221 SLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTT 280 S +A ++L TA RT E+ W + E ++ I A+ MK K H VP++ + +E+L Sbjct: 258 SALALELLILTATRTSEVIEAKWTEFNLETKVWVIPAARMKAGKEHRVPLNTRAMEILEH 317 Query: 281 LSSITKPVSEFVFAGR-NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HE 338 L +I+ VS ++F G + ++ + A+L +++++ HGFR F E + Sbjct: 318 LKTIS--VSSYLFPGSLHKEESHLSNMALLSMMRKMPKYSGYVPHGFRSTFRDWAAETTD 375 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +P + +E+ LAH Y L+KR +M+ W ++ + Sbjct: 376 YPNETVELALAHTIKNKAEAAYRRQDQLEKRTVLMEEWGAIVNAAI 421 >UniRef50_Q98MP8 Probable prophage integrase n=2 Tax=Proteobacteria RepID=Q98MP8_RHILO Length = 402 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 102/405 (25%), Positives = 188/405 (46%), Gaps = 32/405 (7%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT+++I++ K +P + LY ++ SG+ W +RY + G+ + +++ T+ Sbjct: 1 MLTIREIQSLVHKGEPGQWSHTKALYFFIAPSGRPFWAIRYMLKGRRRQMSLTDSIPATV 60 Query: 61 QEARDK---AWTARKDISVGIDPVKAKKASSNN--------NSFSAIYKEWYEHKKQVWS 109 +E + + T R+ + GIDP+ ++A+ +F ++ ++ + W Sbjct: 61 RELKQIELLSETEREKVRKGIDPLAEREAAKAASPEPVRQLVTFKSVALDYIAANRGGWK 120 Query: 110 -VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + + + P+IG LE Q I ++L++++ E A++ R R + Sbjct: 121 NAKHVQQWENTLATYVYPVIGHLEPQSITTAEVLKILQPLWA-TKRETASRVRSRVETII 179 Query: 169 RYAIVTGRAK--------YNPAP---DLADAMKGY-RKKNFPFLPADQIPAFNKALATFS 216 A G ++ +NPA +L + G K +F +P +IPAF +++A Sbjct: 180 GAAKAKGMSEKPEIWANHHNPARWADNLEFWLNGKQEKNHFSAMPYPEIPAFAQSIAERE 239 Query: 217 GSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVE 276 A + L TA RT E W +D E + TI AS MK K H VP+S + ++ Sbjct: 240 DYSTK--ALQFLILTATRTNETLGAEWSEIDTEKAVWTIPASRMKSGKEHRVPLSSEALK 297 Query: 277 LLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE 336 L+ +L I + ++F G + K + A+L+V++ + G HGFR F E Sbjct: 298 LVASLLRIEG--NPYLFPG-AIRNKSLSNMALLMVMRGLKL-GHYVPHGFRSAFRDWAAE 353 Query: 337 HE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 +P +E+ LAH V Y ++KRR++M+ W+ +L Sbjct: 354 ETVYPNHIVEMALAHTIKNKVEAAYRRGDLMEKRRQLMEDWSAYL 398 >UniRef50_C5F036 30S ribosomal protein S15 n=3 Tax=Campylobacterales RepID=C5F036_9HELI Length = 397 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 180/395 (45%), Gaps = 19/395 (4%) Query: 3 TVKQIEAAKPKEKPYRLLDG--NGLYLYVPVS---GKKVWQLRYKIDGKEKILTVGKYPL 57 K+++ P++K R D LY+ V + + Y+ K ++ +GKYP Sbjct: 5 NEKELKRL-PQDKRRRHKDASVKNLYVEVNPNKYGATYTFYFCYRQSNKVNVVYLGKYPA 63 Query: 58 MTLQEARDKAWTA--RKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 ++L +AR KA R D + + ++ + I++EW K+ + Sbjct: 64 ISLMDARLKANELNLRLDKNEVLKIETRREKRNKERILREIFEEW---KQIAIKGKINQD 120 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 A+ + I+ G + D+ +L+ + E + + +YA+ Sbjct: 121 FARPLELHIINQYGNKPVADLTKQDVLKSFDKLYLEDKRETIKRTYIHLKNLIKYALNRD 180 Query: 176 RAKYNP--APDLADAMKGYRKKNFPFLPA-DQIPAFNKALATFSGSIVSLIATKVLRYTA 232 + D+ F + D A+ +++G++ +A +V Y Sbjct: 181 YLQATNLLTLDIDTLYGKLTPTPFRAITDLDTFRDLLLAIDSYNGNLFVKVALQVSPYLF 240 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 LR+ +R++ W+ +D + +I+ I A++MK ++ +VP+SD V++ + + +T P S ++ Sbjct: 241 LRSSTMRNLKWEYLDEKEKILKIPANIMKAKEEFLVPLSDSVLDKILAIKELTYP-SPYI 299 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE----HEWPADAIEVQL 348 F K K + EN + IK++G+ L HGFR ST + E H+ ++ IE+ L Sbjct: 300 FPSDISKGKALAENTLNYAIKRLGFGELMVYHGFRSTASTFLYENKKNHKQDSEVIELCL 359 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 H V+ +YN + L+ RRE+MQWW+D++D Sbjct: 360 DHRERNKVKAVYNRSLRLEDRRELMQWWSDYIDNL 394 >UniRef50_A3VAJ4 Site-specific recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VAJ4_9RHOB Length = 392 Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 157/391 (40%), Gaps = 17/391 (4%) Query: 1 MLTVKQIEAAKP-KEKPYRLLD--GNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 MLT K ++A P K Y + D NGL++ V +G KV+ + +G + + +G YP+ Sbjct: 10 MLTTKSLDAMPPATTKRYEVRDQKVNGLHVRVSTTGAKVFYTLVRPNGSRRRIKIGPYPV 69 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 ++L +AR +A +D+ +G + ++ ++ + ++ E + + + Sbjct: 70 VSLADARRRAMEIARDVELGEFEKTPEVPEASADTLGEMIPKFIELHAKPNTKDW-KRTE 128 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + I I + +V+ G RAN+A ++ + ++ G Sbjct: 129 SVL--HKFDGLKDRPIDQIRRQDVSKVLDGIIANGTPTRANRALSAIKKLMNWCVMRGDI 186 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 + +P L + L +I A + K+L + R E Sbjct: 187 ETSPVALLRPP--TREVQRDRVLSDAEIRAIWQHSDAEDYPFGP--FLKLLLISGQRRSE 242 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 + M W ++ + I + A+ +K ++H+VP+ Q V++L L S+FVF Sbjct: 243 VAGMRWSELNLDEGIWELPANRVKNARLHIVPLPVQAVDILRGLHRFL--DSDFVFT-TT 299 Query: 298 DKKKPICENAVLLVIKQIGYEG--LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG-- 353 + + + EG H FR ST M + I+ H +G Sbjct: 300 GRSAISGFGRLKERVDTALPEGTPDWRFHDFRRTASTGMAKLGVMPHVIDAVTNHKSGVV 359 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 V YN Y +++RE + WA +DE + Sbjct: 360 SGVGATYNRYTYFNEKREALAQWAAHIDEIL 390 >UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodobacteraceae RepID=A3V8A4_9RHOB Length = 386 Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 154/388 (39%), Gaps = 19/388 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT I + +PK++ Y + D + G + V SG W L + +G+ K +T+G YP ++ Sbjct: 9 LTDTFIRSLRPKDQRYDVFDASQPGFGVRVATSGALSWVLLTRENGRRKRITLGGYPAIS 68 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L +AR+ A A +I G K A +F +EWY +++ ++ + Sbjct: 69 LSKAREAARLALSEIQEGTFGRKNAPA-----TFETAVEEWYAREQRAKKS--FRQVEQA 121 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 +LP +G ++ I+ L+ VI R +RG + +AN+ R F +AI Sbjct: 122 MRLHVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAFITRFFNFAIERDLLMS 181 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 +PA L L D++ A + + ++L TA R E+ Sbjct: 182 SPAAALPRP--AVEISRDRVLSRDELCAVWETAEQMGFPFGRIT--QLLILTAQRRDEVA 237 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 M W +D + I K K H+V +S Q + LL+T+ F GR+ Sbjct: 238 GMRWSELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTIPRQNGVDLIFTTTGRSAV 297 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPADAIEVQLAHANGGS--V 356 A L + H R +T M E ++ L H +G V Sbjct: 298 SGFSKAKAALDARSHVSDWRF---HDLRRSAATFMAEELRITPVVVDRILNHVSGTVRGV 354 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDEKV 384 +Y ++L R + W ++ V Sbjct: 355 TAVYLRGEHLADREAALAAWGQLVENLV 382 >UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TXN0_MARAV Length = 396 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 91/393 (23%), Positives = 158/393 (40%), Gaps = 33/393 (8%) Query: 22 GNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPV 81 G GL + + + G K W R++ GK+ +++G+YP +L EARD A ++ GI+P Sbjct: 6 GGGLAIRISIRGTKTWFYRFRFRGKQDAVSLGRYPTTSLLEARDVHGDACALLAKGINPK 65 Query: 82 KA----KKASSNNNSFSAIYKEWYE--------HKKQVWSVGYATELAKMFDDDILPIIG 129 KA KK + + ++ +W K+ S + ++ + +G Sbjct: 66 KAFKESKKVAEQTWTGQELFDDWIRVYSSTPSTRTKRTPSEQVVRQTTWRWNKYLRRTLG 125 Query: 130 GLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAM 189 + I I +I + + E+A K +F A+ G NP L + Sbjct: 126 QILIPTITKQVAASLISAVSELNSREQARKCLTILNGMFGLAVAKGLIDENPCYGLQPSK 185 Query: 190 KGYRK--KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVD 247 G K L ++ F +AL S A K + T LR E+ W ++D Sbjct: 186 LGASKGSPRSRVLTPSEMKRFWEALEDSSLDTSVRAALKAILLTGLRRGEICQAKWSDID 245 Query: 248 FENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENA 307 F + + + K R+ H VP+S + LL +L +VF +PI N+ Sbjct: 246 FNTNVWNLPPEITKSRRKHTVPISTALKNLLQSL----DMDGTYVFRSTRAPWQPIGSNS 301 Query: 308 VLLVIKQI-GYE-------------GLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHAN 352 + I ++ G + S H R +T + E+ E P I L H + Sbjct: 302 LTTAIARLQGIKTQQVNEKAPLFGLERFSVHDLRRTVATGLGEYCETPPHVIRRILNHLS 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + IY A D++ + ++ W+ W+ E +E Sbjct: 362 DDRLEDIYQRATLFDEQAKALERWSTWVMETIE 394 >UniRef50_Q39TC0 Phage integrase n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TC0_GEOMG Length = 414 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 88/409 (21%), Positives = 151/409 (36%), Gaps = 48/409 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSG------KKVWQLRYKIDGKEKILTVGKY 55 + K I+ KP+ K Y + + G + V SG K + Y I+GK K L +G Y Sbjct: 5 FSDKFIQNLKPEAKKYYIRESRGFAIVVHPSGIKNPKGTKTFLYIYTINGKRKELKLGNY 64 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVK----AKKASSNNNSFSAIYKEWYEHKKQVWSVG 111 P +TL++AR K A + G DPV + N +F + + + K S Sbjct: 65 PEVTLKDARIKHGEAYARLVNGEDPVTPPVIKAEPQDENLTFGHFTELYLQWSKDNHSPK 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + + + D LP+ I I+ + + RG + + VF YA Sbjct: 125 WHNTIKCALNKDALPVWEYTLIASIKRRDAIAFLENVARRGI--QVINLHKATSSVFDYA 182 Query: 172 IVTGRAKYNPAPDLADAMKG--YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 + + NP L K FL +I KA+ G + A K++ Sbjct: 183 LEREYIESNPMAGLKAKTIPALKPKARERFLSDSEIKHVWKAIDEGPGYDETKRALKLIM 242 Query: 230 YTALRTKELRSMLWKNVDF-----------ENRIITIDASVMKGRKIHVVPMSDQVVELL 278 TA R E+ +M + + TI A MK + H + ++ +EL+ Sbjct: 243 VTAQRPGEVAAMHRREIQTGVGKPRCKICKRCGWWTIPAERMKNGEEHRIYLTPTALELI 302 Query: 279 TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL--------------ESGH 324 ++F D +PI N++ ++ + + H Sbjct: 303 -------GDAEGYIFPSPQD-GQPINRNSLSQLVSRERNNKKPNGEMYPPYYGLPEWTPH 354 Query: 325 GFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMM 373 R T++ P + E L+H G V YN Y+++++E + Sbjct: 355 DLRRTARTLLARVGVPEEHAEEVLSHKKEGLVDR-YNRHDYMEEKKEAL 402 >UniRef50_A4BQA0 Prophage CP4-like integrase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BQA0_9GAMM Length = 291 Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 93/274 (33%), Positives = 157/274 (57%), Gaps = 1/274 (0%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLTV++I+ AK +KP++L D +GLYL+V +G K+W+ +Y+++G+EK L++G P + L Sbjct: 1 MLTVQEIKNAKASDKPWKLYDRDGLYLFVTPTGGKLWRGKYRVNGREKTLSLGPCPKVGL 60 Query: 61 QEARDKAWTARKDIS-VGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 EAR+K AR+ + V+ + + S +F A+ KEW + W+ +A+++ + Sbjct: 61 AEAREKWQDARRLDDPSAVKQVEKQASDSTTPTFLAVAKEWRTRQTPGWTRKHASQVWRS 120 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + DILP +G I +I+P +++ +I EDRGA E A + +R VF A+ G + Sbjct: 121 LEIDILPTLGPRPIDEIQPREIMALIEGIEDRGAGEIATRVLQRVRAVFSRAVALGYREA 180 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 NPA +L + +K +K L +++P F AL T+ G + + ++L T RT E+R Sbjct: 181 NPAGELHNHLKPRKKGQQTALATEELPTFLHALETYQGDAATRLGLRLLILTLARTSEVR 240 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQ 273 W +D E + T+ MK R+ VP+S Q Sbjct: 241 EAKWAELDREEGVWTVPGERMKNRREQRVPLSQQ 274 >UniRef50_B5IXF4 Site-specific recombinase, phage integrase family protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5IXF4_9RHOB Length = 409 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 105/410 (25%), Positives = 165/410 (40%), Gaps = 40/410 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+ K K Y + GL+LYV +G K W R ++GK + +G + L Sbjct: 7 LTANFIKTVK-KPGRYYDTNSTGLHLYVRKTGSKSWVQRLTVNGKIIDIGLGSSVKLLLL 65 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKK-QVWSVGYATELAKMF 120 EAR ++ K S GIDP + K + +F + + E KK ++ + + + Sbjct: 66 EARTESLKNSKLASEGIDPRQTKVKGTAIPTFRQVTDSFIEKKKGELSNAKHLAQWRSTL 125 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKY 179 P +G L + ++ + ++ E A + R R V +A G R Sbjct: 126 SSYAHPTMGNLPVNEVTIDHIFMALKPIW-LSKNETAQRTRGRIEGVLNFATTKGYRTGS 184 Query: 180 NPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 NPA L K +K P L +P + L G+ A L Sbjct: 185 NPAIWRGNLENLLPKPSKVQNRKKMPALQLLDMPRWWAELKQRDGTGAK--ALMFLTLVG 242 Query: 233 LRTKELRSMLWKNVDFENR----------IITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 R+ E+R M V+F + TI AS MK + H +P+ V E L+ + Sbjct: 243 SRSGEIRGMRHGEVEFFTNDDAAEKGYLGLWTIPASRMKAKVEHCIPIIRPVYEFLSEIP 302 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQI------GYEGLES-----GHGFRHEFS 331 +S+FVF K + + + ++K++ GY +S HG R F Sbjct: 303 ----HLSDFVFPS--SKGGELSDMTLSALMKRMHKSDKTGYFDKKSGQIAVPHGIRSTFR 356 Query: 332 TIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 E+E P DA E+QLAH G V Y A L R +++ W +L+ Sbjct: 357 DWAGENEQPRDATELQLAHRIGNKVEQAYFRADLLKIRAKILMDWYKFLE 406 >UniRef50_C3MF92 Phage integrase-like protein contains catalytic core domain n=77 Tax=Alphaproteobacteria RepID=C3MF92_RHISN Length = 402 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 98/390 (25%), Positives = 171/390 (43%), Gaps = 24/390 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ A + DG GL+L+ G W LR + G+ + + +G ++L+ Sbjct: 8 LTAVAVKNA----SAGKHSDGGGLWLHKREDGGSQWILRVNVHGRRREMGLGSASDVSLK 63 Query: 62 EARDKAWTARKDISVGIDPVK-----AKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATE 115 EAR+ A R + G+DP+K ++A+ N + I ++ +E +K G A Sbjct: 64 EAREAAERWRALVRSGLDPIKERQRQRREAARNLHCLDDIARDAFESRKAELKGDGIAGR 123 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +LP +G + + DI+ + +V+ A E A KA R ++A G Sbjct: 124 WFSPLEIHVLPKLGKVPVVDIDQTDIRDVLAPIWHSKA-ETARKALNRLAICLKHAAALG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 A D A A+ G ++ +PA A+ S V+ +A ++L T +R+ Sbjct: 183 LDVDLQATDKARALLGKQRHKIENIPAMPWQDVPGFFASLSDGSVTHLALRLLILTGVRS 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRK----IHVVPMSDQVVELLTTLSSITKPVSEF 291 LR + + ++ + TI MKGRK VP+SD + ++ + F Sbjct: 243 GPLRFLRDEQIN--GDVWTIPGEAMKGRKGATADFRVPLSDAALAVVEQARQHARDG--F 298 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAH 350 +F K I + + ++++ G E HGFR + E + P D E L H Sbjct: 299 LFPSLR--KGVISDATMSRLMERAGMEAR--PHGFRSSLRDWIAEATDTPHDIAETTLGH 354 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 GG+V Y +L++RR++M WA + Sbjct: 355 IVGGAVERAYRRTDFLEQRRQLMARWARHV 384 >UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ50_PELPD Length = 427 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 164/406 (40%), Gaps = 28/406 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTV--GKYPLMT 59 T K I + KP +K Y +G G + V SG+K W Y DG++K + + G YP ++ Sbjct: 7 FTDKFIMSLKPADKEYWKREGQGFSIRVYPSGEKAWYFIYTFDGRKKYMRLKDGGYPDVS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW---SVGYATEL 116 L +AR+ A+ + GIDP+ + + + + KE+ + +++ + E+ Sbjct: 67 LADAREAFDIAKVKLKNGIDPLAELEQARLDRKHTPFVKEFVDEFIRIYCKENNRGWKEI 126 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + +I+P G ++ DI+ L+ V+ ++RGA AN+ ++F +A+ Sbjct: 127 ERALKSEIVPRWGKRKLTDIKRRDLVLVLDEIKERGAPVMANRILAYTRKMFSWALERAA 186 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 + NP ++ L +I F L S A K++ T R Sbjct: 187 LEVNPFLMMSRPND--ETSRERVLSEKEIKTFWHNLDECKMSDSIKRALKLILVTGQRPG 244 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT----------- 285 E+ M +D E I A+ K ++ H V ++ +L+ S Sbjct: 245 EIIGMHRNEIDGE--WWEIPAARSKNKQAHRVFLTITAKQLIGDASGFIFESPANPAKPD 302 Query: 286 ----KPVSEF-VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWP 340 KP + V +D K+ + VI ++ + H R +T E E Sbjct: 303 ETPPKPAKPYEVRTMTHDIKQNLPHTPHSKVIDRLKVPHF-TPHDLRRTAATRWAEMEIT 361 Query: 341 ADAIEVQLAHANGGS--VRGIYNHAQYLDKRREMMQWWADWLDEKV 384 D I+ H V +YN Y ++++ ++ W L+ + Sbjct: 362 GDMIDRLQNHITRQKQGVGHVYNRYSYAREKQQALEAWEQKLNSII 407 >UniRef50_A1WQF8 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WQF8_VEREI Length = 419 Score = 228 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 83/383 (21%), Positives = 153/383 (39%), Gaps = 24/383 (6%) Query: 22 GNGLYLYVPVSGK----KVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVG 77 G GL +G W LRY+ G + +G+YP ++L++AR+ R I G Sbjct: 26 GGGLTFVATAAGALKGQASWILRYRFGGGAREKVLGRYPDLSLKDAREATRQNRARIQQG 85 Query: 78 IDPVKAKKASS---NNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQ 134 +D K+A + A + + + + + + ++ I P IG L + Sbjct: 86 VDVAAEKRAERLKAHEQVAVAALAQAWYDRHIAKTYKHPEVVLRVIRRHIEPAIGKLGVT 145 Query: 135 DIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLA-DAMKGYR 193 ++ P+ + +V+ R D G AN A R +F +A+ NP G+ Sbjct: 146 EVRPLHIDKVLTRILDAGTPTVANDALRHLFRMFHFAVKRRWIDANPVSGFEISDAGGFE 205 Query: 194 KKNFPFLPADQIPAFNKALATFSG-SIVSLIATKVLRYTALRTKELRSMLWKNVDFENRI 252 +L +++ AF KA+ + +A +L +R EL S W D E + Sbjct: 206 VSRQRWLNREELAAFAKAMQDTPNFGRQNELAVWLLLALCVRKMELLSARWTEFDLERGV 265 Query: 253 ITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA-----------GRNDKKK 301 ++ S K + +P++ V+ L + + SE++F R ++ Sbjct: 266 WSLHPSRTKMNQSIDIPLAAPVLRWLEEVQVFSCN-SEYLFPPRRLIHMKGGVPRRNRFG 324 Query: 302 PICENAVLLVIKQIGYEGLE--SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGI 359 I + + + + ++ + +E + H R T M E L H V G+ Sbjct: 325 HISPDTLNVALLRLPLDDIEHFTVHDMRRTARTHMAALGVDRFVAERALNHKVRD-VEGV 383 Query: 360 YNHAQYLDKRREMMQWWADWLDE 382 YN Y D+R+ + WA L++ Sbjct: 384 YNQYDYFDERKVALDRWAQLLEK 406 >UniRef50_C6UP78 Integrase n=13 Tax=Escherichia coli O157:H7 RepID=C6UP78_ECO5T Length = 301 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 141/260 (54%), Gaps = 6/260 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ +AKP+EK Y L+DG+G+ L V G K W+ R++ GK+ ++ G YP ++L Sbjct: 29 LTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVSLA 88 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN-----SFSAIYKEWYEHKKQVWSVGYATEL 116 +AR K ARK ++ GIDP + K+A +F + +EW ++ WS +A + Sbjct: 89 DARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQK-WSEDHANRV 147 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 K +D+I P IG I ++ LL I+ E G +E A++ ++R + RYA+ +G Sbjct: 148 KKSLEDNIFPTIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSGL 207 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 Y+PA +++ A+ +++ P L +IP + +++G ++ T++ +R+ Sbjct: 208 IDYDPAQEMSGAVASSNRQHRPALELKRIPELLDKIDSYTGRPLTHCTTELTLLIFIRSS 267 Query: 237 ELRSMLWKNVDFENRIITID 256 +L W +DFE + TI Sbjct: 268 KLHFARWSEIDFETSMWTIP 287 >UniRef50_B4W6V7 Site-specific recombinase, phage integrase family protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W6V7_9CAUL Length = 416 Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 100/405 (24%), Positives = 162/405 (40%), Gaps = 35/405 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ + A DG GLYL V +G + W Y+ + + + +G YP + L Sbjct: 6 LTDREAKTAAAG----LHSDGGGLYLNVKTTGARAWVFVYRTGKRRREMGLGGYPGVKLV 61 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------------NNNSFSAIYKEWYEHKKQVWS 109 EAR A AR I+ G DP++A++A++ +F + ++ + W Sbjct: 62 EARAAAVEARAQIARGEDPIEARRANAPPAVDPTPIDAPAAATFKVVAQQVIDSLSPGWR 121 Query: 110 -VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + P+ L DI +L+V+ + E A K R R V Sbjct: 122 GAKTKEGWERSLLRQAAPLADKLP-ADITTQDVLDVLNPYWT-SRPESAGKLRDRIETVL 179 Query: 169 RYAIVTGRAK-YNPAP---DLADAMKGYR---KKNFPFLPADQIPAFNKALATFSGSIVS 221 A V G + NPA LA + R K + LP ++ F AL + + Sbjct: 180 DVAKVNGLREGENPARWRGHLALMLPKRRKLSKGHHRALPYERAAGFMAAL--LAERAMG 237 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTL 281 A + T +R +R+ W + + TI + MK + H VP+S +L + Sbjct: 238 ARALSFVILTGVREGVVRTATWGEISPAGDLWTIPKARMKSERDHRVPLSAAARAVLVGV 297 Query: 282 SSITK-----PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM-N 335 + P + +F G +P+ AV +K++G + HGFR + Sbjct: 298 NPTGSSDGVPPAGQLIFPG-GKPGRPLSNTAVAKPLKELGVAADATIHGFRSTLRDWAGD 356 Query: 336 EHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 E + P + IE LAH G Y L+KRR +M W +L Sbjct: 357 ETDHPREVIEAALAHLVGDETEQAYRRRDALEKRRRLMDDWGTFL 401 >UniRef50_B3R3M6 Prophage integrase n=4 Tax=Bacteria RepID=B3R3M6_CUPTR Length = 418 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 28/401 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I + P DG LY + SG + W ++ + G+ + + +G ++L Sbjct: 9 LTALKIGKL---DVPGHYPDGGNLYFQISESGSRSWIFKFTLRGRSREMGLGPLASVSLA 65 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNS--------FSAIYKEWYEHKKQVWS-VGY 112 AR +A R + G+DP++A+K F A ++ + W + Sbjct: 66 AARAEAAKCRDLLRDGVDPIEARKCKQRQRMLELSGPRLFKAAAADYIAKHRAGWKNEKH 125 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + PI+G +++DI+ +++V++ + E A + R R + Sbjct: 126 AQQWTNTIATYAAPILGDQDVRDIDTAMIVQVLQPIWIK-KRETAFRLRGRLECILDAEK 184 Query: 173 VTG-RAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 G R NPA L + + K+ P LP +IP+F K L G+ + Sbjct: 185 ALGHREGENPARWRGHLDKLLPKQNRRKKIKHHPALPWQEIPSFMKELREQRGTAARM-- 242 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 + L T +RT+E++ + D R+ T+ MK VPM+D++VEL+ ++ Sbjct: 243 LEHLILTVVRTQEVQFARPEEFDMRYRVWTVPGERMKMELPLRVPMTDRLVELVEA--AL 300 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADA 343 +++ GR K KP+ A+L +++++GY G + HGFR F + + E+ Sbjct: 301 PGARDGWLYPGRK-KGKPLSNMAMLKLLERMGY-GHVTVHGFRSTFRDWVADCTEYADSL 358 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E+ LAHA Y L++RR+MM+ WA + + Sbjct: 359 AEMALAHAIQNESEAAYRRGDMLERRRKMMRDWAHYCSGQA 399 >UniRef50_A5G635 Phage integrase family protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G635_GEOUR Length = 437 Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 87/406 (21%), Positives = 166/406 (40%), Gaps = 35/406 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 T + I++ KP+ + Y++ +G G + V +G K W Y +GK + L +G YP +L+ Sbjct: 18 FTDRFIKSLKPESEMYQVREGRGFAIRVLPTGVKTWYYIYTFNGKRRQLNLGNYPDKSLE 77 Query: 62 EARDKAWTARKDISVGIDPVKAKKA-----SSNNNSFSAIYKEWY--EHKKQVWSVGYAT 114 +A + + G+DP+ A + + + Y E K S + Sbjct: 78 DAHKVYLESAALVKNGVDPMDKPVAADPPPPQVELTVRRLAVDLYLDEWSKIHHSERWHY 137 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 K + D+LP G DI +E++ R A +A + ++ YA+ Sbjct: 138 NNKKALEADVLPAWGDRLAADIRRKDAVEILELVAKR-APGQARNVLKAARGMYTYAVDR 196 Query: 175 GRAKYNPAPDLADAMKGYRKKNF---PFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 +YNP D+ + + + L +I A+ GS + A K++ T Sbjct: 197 ELLEYNPFTDIKISRTIPKMQPMSRDRELSEKEIKHLWNAIDEGGGSDGTKRALKLILIT 256 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRK----IHVVPMSDQVVELLTTLSSITKP 287 R E+ M + + E + TI +K RK H + +S + L+ Sbjct: 257 GQRPGEVVGMHRQEI--EGKWWTIPWQRIKTRKRRQEDHRIYLSPLAMSLI-------GD 307 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEG---------LESGHGFRHEFSTIMNEHE 338 F+F+ + + + ENA+ +++ + + H R +T ++ Sbjct: 308 GKGFIFSDPSGENS-MTENALSHHVRKDIPDTVKKPYYGLPRWTPHDLRRTAATRLSRIG 366 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + I+V L HA G V GIYN +Y ++++ + W+ L++ + Sbjct: 367 ASDEIIDVILNHAKKG-VSGIYNRNKYDKEKQQWLTKWSQHLEKLI 411 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX 471 e-131 UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV 455 e-126 UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronos... 453 e-126 UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio s... 449 e-125 UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp... 443 e-123 UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepI... 443 e-123 UniRef50_Q2T016 Site-specific recombinase, phage integrase famil... 441 e-122 UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 Re... 439 e-122 UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria... 438 e-121 UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio R... 437 e-121 UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteob... 436 e-121 UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4S... 436 e-121 UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio... 436 e-121 UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VM... 435 e-120 UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacter... 434 e-120 UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomo... 430 e-119 UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root Rep... 430 e-119 UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfo... 427 e-118 UniRef50_D0W4G5 Site-specific recombinase, phage integrase famil... 425 e-117 UniRef50_C0N6F7 Site-specific recombinase, phage integrase famil... 425 e-117 UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio ... 424 e-117 UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae R... 419 e-116 UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobact... 419 e-116 UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria Re... 419 e-116 UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomon... 419 e-115 UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas flu... 417 e-115 UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochl... 416 e-115 UniRef50_B4X5T7 Site-specific recombinase, phage integrase famil... 415 e-115 UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea... 415 e-114 UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli R... 415 e-114 UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadacea... 414 e-114 UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobac... 414 e-114 UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae R... 414 e-114 UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter ... 412 e-113 UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholde... 410 e-113 UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella fer... 410 e-113 UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID... 410 e-113 UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 409 e-113 UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammapro... 408 e-112 UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=... 407 e-112 UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacte... 407 e-112 UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus p... 407 e-112 UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thio... 406 e-112 UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophil... 406 e-112 UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillu... 405 e-111 UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromon... 405 e-111 UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholde... 404 e-111 UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobac... 403 e-111 UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovoran... 403 e-111 UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholde... 403 e-111 UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria R... 402 e-110 UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteria... 401 e-110 UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enter... 401 e-110 UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriace... 400 e-110 UniRef50_A6QCY9 Site-specific recombinase, phage integrase famil... 400 e-110 UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. ... 399 e-109 UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5... 398 e-109 UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_A... 397 e-109 UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepI... 397 e-109 UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTA... 397 e-109 UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria Rep... 396 e-109 UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammapro... 395 e-108 UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_S... 394 e-108 UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804... 394 e-108 UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobac... 394 e-108 UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_P... 393 e-108 UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola... 393 e-108 UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophi... 393 e-108 UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria ... 392 e-107 UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas inter... 392 e-107 UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellacea... 391 e-107 UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillu... 390 e-107 UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp.... 389 e-107 UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombina... 389 e-107 UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomo... 388 e-106 UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, pha... 388 e-106 UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium ... 387 e-106 UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria ... 387 e-106 UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalole... 387 e-106 UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=... 386 e-106 UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157... 386 e-106 UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_... 385 e-105 UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IG... 385 e-105 UniRef50_B6BKY5 DNA integration/recombination/inversion protein ... 385 e-105 UniRef50_Q4K6S7 Site-specific recombinase, phage integrase famil... 385 e-105 UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingell... 385 e-105 UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID... 384 e-105 UniRef50_B7I6Z3 Site-specific recombinase, phage integrase famil... 384 e-105 UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacte... 384 e-105 UniRef50_A4VPC8 Site-specific recombinase, phage integrase famil... 383 e-105 UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacte... 383 e-105 UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria ... 382 e-105 UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaprote... 381 e-104 UniRef50_A7H0X5 DNA integration/recombination/inversion protein ... 381 e-104 UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root Rep... 381 e-104 UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepI... 378 e-103 UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrop... 378 e-103 UniRef50_B9D1P3 DNA integration/recombination/inversion protein ... 377 e-103 UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobac... 376 e-103 UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae ... 375 e-102 UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BV... 375 e-102 UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp... 373 e-102 UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetoba... 373 e-102 UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Si... 373 e-102 UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix chol... 372 e-101 UniRef50_Q0C1T8 Site-specific recombinase, phage integrase famil... 371 e-101 UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonad... 371 e-101 UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enteroba... 371 e-101 UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion p... 370 e-101 UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria ... 370 e-101 UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID... 370 e-101 UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales ... 369 e-101 UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZ... 369 e-101 UniRef50_B9NUX0 Site-specific recombinase, phage integrase famil... 367 e-100 UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE4... 367 e-100 UniRef50_C8NCE3 Phage integrase family site-specific recombinase... 365 2e-99 UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella Rep... 364 3e-99 UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 364 3e-99 UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatu... 363 6e-99 UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni C... 362 1e-98 UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EV... 362 1e-98 UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcu... 362 1e-98 UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium ML... 361 3e-98 UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobact... 361 3e-98 UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP13... 360 5e-98 UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis ... 360 7e-98 UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butz... 359 8e-98 UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Vermineph... 358 2e-97 UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepI... 358 2e-97 UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumann... 358 2e-97 UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C... 358 3e-97 UniRef50_B8F737 Phage integrase family site specific recombinase... 357 4e-97 UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii ... 357 4e-97 UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio... 356 8e-97 UniRef50_A7H3V7 Putative site-specific recombinase, phage integr... 355 2e-96 UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO 353 5e-96 UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJ... 352 1e-95 UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family... 351 3e-95 UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphil... 350 4e-95 UniRef50_C8PFJ4 DNA integration/recombination/inversion protein ... 350 7e-95 UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3... 349 8e-95 UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydroba... 349 1e-94 UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family... 348 2e-94 UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=... 348 2e-94 UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family... 348 2e-94 UniRef50_A7JZW2 Site-specific recombinase, phage integrase famil... 347 5e-94 UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 R... 347 6e-94 UniRef50_A6Q4N1 Site-specific recombinase, phage integrase famil... 345 1e-93 UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium ... 345 2e-93 UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuro... 343 7e-93 UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacte... 342 1e-92 UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphi... 340 6e-92 UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultu... 339 9e-92 UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1... 338 2e-91 UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus t... 338 3e-91 UniRef50_C9M6R5 Site-specific recombinase, phage integrase famil... 337 4e-91 UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresis... 337 6e-91 UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=... 336 9e-91 UniRef50_Q74H29 Integrative genetic element Gsu32, integrase n=1... 335 2e-90 UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ... 335 2e-90 UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integras... 335 2e-90 UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanell... 335 2e-90 UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepI... 334 3e-90 UniRef50_D0CDZ4 DNA integration/recombination/inversion protein ... 333 6e-90 UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholde... 332 1e-89 UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111... 331 3e-89 UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria Rep... 330 6e-89 UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobac... 330 7e-89 UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadec... 329 9e-89 UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family... 329 1e-88 UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacte... 329 1e-88 UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0... 329 1e-88 UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacteriu... 329 1e-88 UniRef50_Q39TC0 Phage integrase n=1 Tax=Geobacter metallireducen... 329 1e-88 UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU 328 2e-88 UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM40... 328 2e-88 UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella si... 328 2e-88 UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium ... 328 2e-88 UniRef50_D1Y3S1 Site-specific recombinase, phage integrase famil... 326 7e-88 UniRef50_B2TTV9 Site-specific recombinase, phage integrase famil... 326 8e-88 UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=... 325 1e-87 UniRef50_A3VAJ4 Site-specific recombinase, phage integrase famil... 325 2e-87 UniRef50_Q0BR52 DNA integration/recombination/inversion protein ... 324 3e-87 UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP... 324 3e-87 UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteur... 324 4e-87 UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacteriu... 324 4e-87 UniRef50_Q7MPT5 Site-specific recombinase, phage integrase famil... 324 4e-87 UniRef50_C3MAV8 DNA integration/recombination/invertion protein ... 324 4e-87 UniRef50_B3AX37 Site-specific recombinase, phage integrase famil... 322 1e-86 UniRef50_C6E138 Integrase family protein n=1 Tax=Geobacter sp. M... 322 1e-86 UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=... 322 1e-86 UniRef50_B5J5X2 Site-specific recombinase, phage integrase famil... 322 1e-86 UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaprot... 321 2e-86 UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 ... 321 2e-86 UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria ... 321 2e-86 UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter l... 321 3e-86 UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12... 320 4e-86 UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae... 320 4e-86 UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter a... 320 6e-86 UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter... 319 1e-85 UniRef50_B5J7B6 Site-specific recombinase, phage integrase famil... 318 1e-85 UniRef50_B5QDA8 Phage integrase family protein n=1 Tax=Salmonell... 318 2e-85 UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas inter... 317 4e-85 UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RK... 317 4e-85 UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis ... 317 5e-85 UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia... 316 6e-85 UniRef50_A5G635 Phage integrase family protein n=1 Tax=Geobacter... 316 6e-85 UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirill... 316 9e-85 UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9... 315 1e-84 UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QA... 315 1e-84 UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodoba... 315 2e-84 UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas put... 315 2e-84 UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus... 315 3e-84 UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltic... 313 6e-84 UniRef50_Q92LG2 Phage-related integrase n=1 Tax=Sinorhizobium me... 313 6e-84 UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepI... 313 6e-84 UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodoba... 313 8e-84 UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein ... 312 1e-83 UniRef50_B5J8B6 Site-specific recombinase, phage integrase famil... 312 1e-83 UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobac... 311 2e-83 UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria... 311 3e-83 UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillu... 311 3e-83 UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucle... 311 4e-83 UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus... 310 6e-83 UniRef50_A6X006 Phage integrase family protein n=2 Tax=Alphaprot... 310 9e-83 UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella fer... 308 2e-82 UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurel... 308 3e-82 UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crun... 306 6e-82 UniRef50_B9R123 Site-specific recombinase, phage integrase famil... 306 6e-82 UniRef50_D1R6D1 Putative uncharacterized protein n=1 Tax=Parachl... 306 1e-81 UniRef50_Q5LLE0 Site-specific recombinase, phage integrase famil... 305 1e-81 UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=... 305 2e-81 UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovor... 305 2e-81 UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobial... 304 3e-81 UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8... 304 4e-81 UniRef50_Q1R2C9 Integrase-like protein n=9 Tax=root RepID=Q1R2C9... 304 4e-81 UniRef50_A3JW30 Site-specfic recombinase, phage integrase family... 304 5e-81 UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydroba... 303 7e-81 UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3... 302 1e-80 UniRef50_A6X585 Phage integrase family protein n=1 Tax=Ochrobact... 302 1e-80 UniRef50_B6JJF3 Phage integrase family protein n=2 Tax=Bradyrhiz... 301 2e-80 UniRef50_Q483M1 Site-specific recombinase, phage integrase famil... 301 3e-80 UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp... 301 3e-80 UniRef50_A1WQF8 Phage integrase family protein n=1 Tax=Vermineph... 301 3e-80 UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria ... 300 4e-80 UniRef50_A3WKP7 Site-specific recombinase, phage integrase famil... 300 5e-80 UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacter... 300 6e-80 UniRef50_Q98MP8 Probable prophage integrase n=2 Tax=Proteobacter... 299 1e-79 UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteri... 298 2e-79 UniRef50_B9KC61 Site-specific recombinase, phage integrase famil... 298 3e-79 Sequences not found previously or not previously below threshold: >UniRef50_Q93SE7 Integrase n=181 Tax=root RepID=Q93SE7_ECOLX Length = 394 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 187/388 (48%), Positives = 268/388 (69%), Gaps = 7/388 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ AKPK+KPY+L DG G+YL + +G K W+++Y+ GKEK+L++G YP +TL Sbjct: 3 LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +AR+K ARK ++ G DP +AKK N+F AI +EW++ K WS+ Y E Sbjct: 63 DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYRDE 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + F+ DI P IG I +I+PM+LLE +R+ E RGA+E+ K R+RCGEVFRYAIVTG Sbjct: 123 IIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA YNPAPDLA A+ +K +FPFL A+++P F LA ++GSI++ AT+++ T +RT Sbjct: 183 RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 +ELR W+++DFE ++ I A VMK ++ H+VP+S+QV+ L L I+K VF G Sbjct: 243 QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH-HPLVFIG 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 RND +KPI + ++ VI+ +GY+G +GHGFRH STI++E + + IE+QLAH + S Sbjct: 302 RNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEK 383 +RG YNHA YLD RREMMQW+AD++D Sbjct: 362 IRGTYNHALYLDGRREMMQWYADYIDSL 389 >UniRef50_P37317 Integrase n=42 Tax=root RepID=VINT_BPSFV Length = 385 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 381/384 (99%), Positives = 383/384 (99%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL Sbjct: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWY+HKKQVWSVGYATELAKMF Sbjct: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYDHKKQVWSVGYATELAKMF 120 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN Sbjct: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 Query: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS Sbjct: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 Query: 241 MLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKK 300 M WKNVDFENRIITIDASVMKGRKIHVVPMSDQV+ELLTTLSSITKPVSEFVFAGRNDKK Sbjct: 241 MQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVIELLTTLSSITKPVSEFVFAGRNDKK 300 Query: 301 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY 360 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY Sbjct: 301 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIY 360 Query: 361 NHAQYLDKRREMMQWWADWLDEKV 384 NHAQYLDKRREMMQWWADWLDEKV Sbjct: 361 NHAQYLDKRREMMQWWADWLDEKV 384 >UniRef50_C0GR55 Integrase family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GR55_9DELT Length = 401 Score = 453 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 139/386 (36%), Positives = 226/386 (58%), Gaps = 5/386 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q++ KP YR+ D +G+YL V +G K+W+ +Y+ +GK K+L +GKYP ++L Sbjct: 3 LTDVQVKGLKPGSTKYRVKDKDGMYLEVTPAGGKLWRFKYRFNGKNKLLALGKYPDVSLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS--NNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 +AR+K AR+ I+ G DP KK N+F AI EW+ KK W+ G+A ++ + Sbjct: 63 KAREKLSIARQQIAEGKDPAYIKKIEKAEKENTFKAITDEWWRAKKSTWTPGHAEKVYRR 122 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + D+LP + I++I ++LEV+++ E RG + A + + C +F +A+ +GRA++ Sbjct: 123 LEIDVLPYLKDRPIKEITAREILEVLKKAEARGVTDTAYRLAQMCSNIFIFALASGRAEH 182 Query: 180 NPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 NPA D++ A+ + K N P + D+I A+ F+GS L A K+ +R EL Sbjct: 183 NPAADISKALTAHPKTNRPAITEPDEIKELLLAIDGFTGSYTVLCALKIAILVFVRPGEL 242 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W ++F+ + + + MK ++ H+VP+S Q V++L + +T +VF Sbjct: 243 RQASWAEINFDEALWYVPSQRMKMKREHLVPLSGQAVKILKDIHPLTGA-GHYVFPSIRT 301 Query: 299 KKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVR 357 +P+ EN + ++++GY HGFR ST ++E WP+D IE QLAH + +R Sbjct: 302 NSRPMSENTLNAALRRLGYPQEKLCAHGFRTMASTRLHEMGWPSDIIEFQLAHVDQNKIR 361 Query: 358 GIYNHAQYLDKRREMMQWWADWLDEK 383 GIYN A+YLD+R +MMQ WAD+LD+ Sbjct: 362 GIYNRAEYLDQRTKMMQAWADYLDDL 387 >UniRef50_D2L516 Integrase family protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L516_9DELT Length = 417 Score = 449 bits (1156), Expect = e-125, Method: Composition-based stats. Identities = 136/396 (34%), Positives = 215/396 (54%), Gaps = 15/396 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AK +KP ++ DG GL+L V +G K+W+ +Y DGKEK+L +GK+P + L+ Sbjct: 8 LTDVAIRNAKAADKPVKMFDGAGLFLQVTPTGGKLWRFKYLFDGKEKLLALGKWPDVGLK 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN---------NNSFSAIYKEWYEHKKQVWSVGY 112 AR + AR ++ G+DP + +K N+F+ + ++W+ + +VWS G+ Sbjct: 68 MARQRRDEARALVAQGVDPSEKRKQDRADAEGQAVENANTFAVVARDWHAKQVKVWSEGH 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A ++ + + P+ G + I + +L +R ED+G E A + R+ C VF +AI Sbjct: 128 AAKILARMEQHLFPVFGNIPITTLRAPAILPTLRDIEDKGNHETAKRLRQYCEAVFTFAI 187 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TG A+ N DL A+ R N P + + +A+ + GS V++ A ++ Sbjct: 188 STGIAERNVGADLRGALAPCRATNRPAIIDPKGVAQLLRAIDGYQGSPVTVAALRLAPLV 247 Query: 232 ALRTKELRSMLWKNVDFENR---IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 +R ELR W +D + +I A MK R+ HVVP+S Q V+++T + S+T Sbjct: 248 FVRPGELRQAEWSEIDLDAADGPRWSIPAEKMKMRRDHVVPLSKQAVDIITEIYSLTGQD 307 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 ++F K + + A+ ++++GYE G HGFR ST++NE W +D IE Q Sbjct: 308 -RYLFPCNRTKGRCMSNMALNAALRRMGYEQGEMCAHGFRAMASTLLNELGWNSDLIERQ 366 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 LAHA S+R YN A+YL +RR MMQ WAD+LD Sbjct: 367 LAHAERNSIRAAYNRAEYLPERRRMMQAWADYLDML 402 >UniRef50_C6MJ08 Integrase family protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MJ08_9PROT Length = 418 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 146/390 (37%), Positives = 216/390 (55%), Gaps = 9/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+ AKP+ KPYR+ DG G+Y+ V +G K W++ Y+ K+K L +G YP +TL Sbjct: 3 LTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAYRFADKQKTLALGVYPDVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +ARD+ ARK ++ G DP K++ NSF I +E++ K +WS +A + Sbjct: 63 DARDRRNEARKLLANGADPGAVKQSQKKQAKIAASNSFELIAREFHSLKTPMWSTNHAAD 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 K + +I P G I +I+ +L+ IR E R A E A + +R V YAI TG Sbjct: 123 WIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEVAARVLQRVRAVCAYAIATG 182 Query: 176 RAKYNPAPDLADAM-KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA++NPA ++ A+ + K+F L ++P F +A+A + ++ AT +L T +R Sbjct: 183 RARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLMLTFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T E+R W D + ++ I A MK R+ H+VP++ Q +E+L L +T E +F Sbjct: 243 TGEVRGAKWCEFDLDAKLWKIPAERMKSREPHIVPLAKQAIEILGELHPLTGH-GEHLFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANG 353 R K I EN VL VI+++GY+G +GHGFR ST +N D IE QLAH Sbjct: 302 NRTGNGKVISENTVLKVIERLGYKGRMTGHGFRTIASTYLNGVGMIRPDVIEAQLAHTEA 361 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 + R YN A Y++ R MMQ+WAD LD Sbjct: 362 NATRAAYNRANYMEYRAAMMQFWADTLDAM 391 >UniRef50_C9NQJ4 Phage integrase n=6 Tax=Gammaproteobacteria RepID=C9NQJ4_9VIBR Length = 415 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 121/392 (30%), Positives = 206/392 (52%), Gaps = 9/392 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLMT 59 LT +I+++KPK+K Y L DG+GL L + +G K W L Y K L++GKYP ++ Sbjct: 8 LTPTKIKSSKPKDKEYNLFDGDGLRLRIKPNGSKHWILNYYRPSNRKRANLSLGKYPDLS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L AR A++ ++ GIDP + +K +++ ++F + +W+E KK + YA Sbjct: 68 LANARKMTLEAKELLAQGIDPQEERKRHQLEQKANHEHTFINVTTKWFEIKKDDVTPDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + I P + + ++DI Q++E+++ E +G++E + +R EV YA Sbjct: 128 VDIWRSLELHIFPQLSDVPVRDITAPQVIELLKPIEAKGSLETVKRLAQRLNEVMNYATN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G + NP + A K +K+N L ++P A+A S + + +T Sbjct: 188 CGLVQANPLTGIKAAFKKPKKENMAALTPAELPELMGAIANASIKRTTRCLIEWQLHTMT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W+ +D++ ++ TI MK R+ H +P+++Q++ELL + I+ EF+F Sbjct: 248 RPSEASGARWEEIDWDEKVWTIPPERMKKRREHRIPLTEQMLELLEVIKPISGHR-EFIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 D KKP + +K++G+ G HG R ST +NE + D IE LAHA+ Sbjct: 307 PSDRDPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFEPDLIEAALAHADD 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 VR YN YL++RR MM WW+ ++E + Sbjct: 367 NQVRSAYNRTDYLERRRPMMCWWSGHIEEAAK 398 >UniRef50_Q2T016 Site-specific recombinase, phage integrase family n=30 Tax=Bacteria RepID=Q2T016_BURTA Length = 438 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 136/392 (34%), Positives = 208/392 (53%), Gaps = 11/392 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKP E+PYRL DG GLYL V +G + W+++Y+ DGKEK+ + G YP ++L Sbjct: 48 LTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGSRYWRMKYRFDGKEKLASFGVYPEVSLA 107 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGYATE 115 +AR ARK ++ G DP + K+ SF A+ +EW+E +K W+ YA + Sbjct: 108 QARQACLAARKLLAAGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGWTEVYANK 167 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D P IG ++DIE +LE++R E RG E A + +R VF+Y I+TG Sbjct: 168 VINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMTG 227 Query: 176 RAKYNPAPDLADAMKGYR---KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 R NPA D+ + K+ + +IP + +A +SG V+ +A + + T Sbjct: 228 RCSRNPAADIDAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALTF 287 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 RT E+ + W D I MK R H+VP+S Q +E+L L + V Sbjct: 288 TRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRELNGNQ-RLV 346 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 F + I N +L + ++GY+ +GHGFR +T++ E + D ++ QLAHA Sbjct: 347 FYSVQGRS-HISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQLAHAE 405 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 V Y HA+YL +RR+MMQ WAD+L + Sbjct: 406 RNQVTAAYVHAEYLPERRKMMQHWADYLTQTA 437 >UniRef50_Q5P090 Integrase n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P090_AZOSE Length = 402 Score = 439 bits (1130), Expect = e-122, Method: Composition-based stats. Identities = 140/389 (35%), Positives = 208/389 (53%), Gaps = 7/389 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K I K KP ++ DG GLYL V +G K+W+ R+++ GKE + +G YP ++L Sbjct: 3 LTDKAIRGVKGGAKPVKMADGGGLYLEVTPAGGKLWRYRFRLAGKENVFAIGAYPRVSLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +AR AR + G +P ++ + N+F+ + EWY+ K WS G+ Sbjct: 63 DARKARDEARDLVKQGFNPSHYRQQAKQAVIDENLNTFAPVADEWYQSKVDSWSKGHRHH 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D DILP IG L I+ I L +V+++ RGA RA AR+ G VF AI+T Sbjct: 123 VRTILDKDILPRIGKLPIRSITSPLLHDVMKKIVARGATTRAILARQIMGSVFNLAILTH 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA NPA L + ++ L + F + L+ ++G + IA ++L TA+R Sbjct: 183 RADTNPAEPLKRQIARCVTEHHRHLEERDVGDFLRKLSDYTGHATTRIALQLLMLTAVRP 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 E+ W D + + TI MK RK H+VP+S+Q V+LL L IT + F+F Sbjct: 243 GEVCGARWAEFDIDGQNWTIPKERMKTRKPHIVPLSNQAVDLLKELEPITGDTA-FLFPS 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 + K + + ++ + ++GY S HG R FST++N + +D IE QLAH G Sbjct: 302 QGTKTQTMPTQSIRNAVVKLGYADKFSPHGARGTFSTMLNGRGYNSDWIERQLAHDEGNR 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKV 384 VR YNH QYL +RR+M+Q WAD LDE Sbjct: 362 VRASYNHMQYLPERRKMLQEWADLLDELR 390 >UniRef50_A4JAY4 Phage integrase family protein n=22 Tax=Bacteria RepID=A4JAY4_BURVG Length = 405 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 146/389 (37%), Positives = 225/389 (57%), Gaps = 8/389 (2%) Query: 2 LTVKQIEAAKPKEKPY-RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT + A+ E +L DG GLYL + SG K W+L+Y+ +GKE +LT G YP +L Sbjct: 6 LTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPATSL 65 Query: 61 QEARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 +AR + A++ ++ G +P + +A + N+F A+ EWYE ++ WS +A Sbjct: 66 ADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATWSASHAN 125 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + K D ++ P+IG I I LL V+RR E R A E A K + CG+VFRYA+ T Sbjct: 126 RVKKQLDREVFPLIGQRPISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVFRYAVAT 185 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA+ +P+PDL A+K K+ + ++P +++A++ G + +A + L T +R Sbjct: 186 SRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIASYEGEPETRLALRFLALTFVR 245 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T ELR W +D E R I A MK R++H+VP+++Q + LL+ L ++T ++F Sbjct: 246 TIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQAIALLSELRALTGHR-RWLFP 304 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + + EN +L + ++GY +GHGFR STI+NE + +D IE QLAH+ Sbjct: 305 NSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGFNSDWIERQLAHSEQD 364 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEK 383 VR YNHA+YL +R MMQWWAD+LD++ Sbjct: 365 GVRAAYNHAEYLSERHRMMQWWADYLDKQ 393 >UniRef50_B8J055 Integrase family protein n=3 Tax=Desulfovibrio RepID=B8J055_DESDA Length = 402 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 131/387 (33%), Positives = 208/387 (53%), Gaps = 6/387 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I KP K R +DG GLYL V+G K W+++Y+++GKEK L+ G +P ++L+ Sbjct: 7 LTEIKIRNIKPNGKIERFVDGEGLYLETSVAGGKHWRMKYRVNGKEKRLSFGPWPDISLK 66 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN---NSFSAIYKEWYEHKKQVWSVGYATELAK 118 EAR+ A++ + +DP KK + +F I E+ EH++ VW+ + + Sbjct: 67 EAREMRDEAKRQLRESLDPSAEKKKAKQEQAAPTFRDIALEYVEHQRSVWAASHTRTVEG 126 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D+ P G I + P +L ++R+ E+R A E A++ C +F+YA+ G + Sbjct: 127 RLALDVYPAFGAKPIAAVTPQDILAMLRKIEERRAFETASRVLGFCSLIFKYAVTLGLVE 186 Query: 179 YNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +P DL A+K Y K + ++ A +A+ + GS+V A T R E Sbjct: 187 ADPCRDLRPALKPYAKGQLAAITKPKEVGALMRAIDDYKGSVVVRAALLFSALTFCRPGE 246 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 +R + W ++FE TI A MKGR H VP+S Q +E+L + T +++VF Sbjct: 247 IRHVEWAEINFEREEWTIPAEKMKGRTEHRVPLSRQALEVLHGIMPYTG-SAKYVFPTPR 305 Query: 298 DKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 +P+ EN VL ++ +GY + + HGFR ST++NE DAIE QLAH + Sbjct: 306 SNNRPLSENGVLSALRNMGYTKEQMTAHGFRSMASTLLNELGHRPDAIEAQLAHKGADKI 365 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDEK 383 R YN A+Y+ +RR +MQ WAD+L++ Sbjct: 366 RATYNRAEYMKERRNLMQAWADYLEDL 392 >UniRef50_P32053 Prophage CP4-57 integrase n=104 Tax=Gammaproteobacteria RepID=INTA_ECOLI Length = 413 Score = 436 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 124/389 (31%), Positives = 196/389 (50%), Gaps = 9/389 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT +I+AAKPK+ Y+L DG+GL L + SG K+WQ RY + + + G YP ++ Sbjct: 8 LTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRPLTKQRTKQSFGAYPAVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR ++ ++ IDP + +K + N+F + + W+ KK + YA Sbjct: 68 LSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEAKTNTFLLVAERWWNVKKTSVTEDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + DI P IG + I +I+ L++ ++ + RGA+E + +R EV YA Sbjct: 128 DDIWRSLERDIFPAIGDISITEIKAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 TG P+ ++ A + +KKN P + DQ+P + T S S+ + T Sbjct: 188 TGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTIT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W +DF I A+ MK + H VP+SD + +L + ++ EF+F Sbjct: 248 RPAEAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSGGR-EFIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 R +P+ V +K+ G G+ HG R ST +NE +P D IE LAH + Sbjct: 307 PSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEEGFPPDVIEAALAHVDK 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 VR YN + YL++RR MMQWWAD + Sbjct: 367 NEVRRAYNRSDYLEQRRPMMQWWADLVKA 395 >UniRef50_A4SSF4 Phage integrase n=3 Tax=Proteobacteria RepID=A4SSF4_AERS4 Length = 404 Score = 436 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 145/391 (37%), Positives = 216/391 (55%), Gaps = 10/391 (2%) Query: 2 LTVKQIEAAKPKEKP--YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT AK KP +L D GL+L V SG K W+L+Y+ GKEK L +G YP ++ Sbjct: 3 LTDITARQAKWSGKPNGDKLADEKGLFLLVNKSG-KYWKLKYRHGGKEKKLALGVYPEVS 61 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYA 113 L+EAR K AR+ I+ GIDP +K S + NS + +EW++ + +WS G+A Sbjct: 62 LREARAKRDEARRVIAEGIDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWSPGHA 121 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 T + + + D+ P +G + I ++ +LE +R+ E RGA E A + +R + RYAI Sbjct: 122 TRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRVSAIMRYAIQ 181 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 TGRA YNPA DL A+K ++++ P LP ++P F + L + + +A +L T Sbjct: 182 TGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLMLTMT 241 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E+R W D E I A+ MK R H+VP+S Q + +L L +T E +F Sbjct: 242 RPGEVRFARWDEFDMERAEWRIPAARMKMRTEHLVPLSRQALAVLDELHQLTGHC-ELLF 300 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 P+ EN + + ++GY+G+ + HGFR ST +NE + D IE QLAHA Sbjct: 301 PSERKLTNPMSENTLSYAMGRMGYKGIATPHGFRALASTTLNEEGFDPDVIERQLAHAER 360 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 VR Y+ A+YLD RR+++QW AD+ D + Sbjct: 361 NKVRAAYHRAEYLDDRRKLLQWLADFYDSQR 391 >UniRef50_C8R2J0 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2J0_9DELT Length = 420 Score = 436 bits (1122), Expect = e-121, Method: Composition-based stats. Identities = 127/403 (31%), Positives = 208/403 (51%), Gaps = 22/403 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGK----EKILTVGKYPL 57 LT Q+ K ++K RL DG GLYL V SG K W+ +Y+ G+ EK L++G YP Sbjct: 3 LTDAQVRNVKAEDKTRRLFDGGGLYLEVAPSGGKWWRFKYRFPGQGKIQEKRLSLGTYPG 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSN----NNSFSAIYKEWYEHKKQVWSVGYA 113 + L+EAR K R+ I+ GIDP ++++ SF A+ + W+ + W+ ++ Sbjct: 63 VGLKEARAKRDEMRRQIAQGIDPANLRRSTRGSGALAGSFEAVARLWHRNNSTDWAPSHS 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 T L + + + P +G + DI L+ V+ R ++ G E A + + CG+VFRYA+ Sbjct: 123 TRLIRRLEAHVFPYLGNRPVGDITAPDLMNVLERIKNSGHTETARRIQTICGQVFRYAVQ 182 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G A+Y+P+ L + KN + ++ +A+ + G+ V A ++ Sbjct: 183 KGFAEYDPSSALKGCLGKTTAKNMATITEPAEVGRLLQAIDEYPGTQVVRCALQLAPLFF 242 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKI----------HVVPMSDQVVELL-TTL 281 +R+ ELR+ W D NR I MK R+ H+VP++ Q V++L L Sbjct: 243 VRSGELRNARWDEFDLVNREWKIPVERMKMRQDEKRARQGQVGHIVPLATQAVKILEEEL 302 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL-ESGHGFRHEFSTIMNEHEWP 340 +T VF G + + I + + ++++GY G + HG RH ST+++ + Sbjct: 303 RPLTG-RCALVFPGLRSRDRAISDATLTNALRRMGYTGDEMTIHGLRHMASTLLHGLGFQ 361 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 + IE QLAH + +RG+YN A YL++RR MMQ WAD+L + Sbjct: 362 SLVIERQLAHKDRNRIRGVYNQADYLEERRRMMQSWADYLGQL 404 >UniRef50_C0VMW7 Phage integrase n=2 Tax=Acinetobacter RepID=C0VMW7_9GAMM Length = 419 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 212/388 (54%), Gaps = 6/388 (1%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ Q+ KP EK R D GLYL V SG + W+L+Y+ +G+E LT+G YP ++L Sbjct: 21 MLSDAQVRKIKPLEKKKRYADEKGLYLEVTPSGGRFWRLKYRFNGRESTLTIGSYPEISL 80 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN----NSFSAIYKEWYEHKKQVWSVGYATEL 116 +AR AR + IDP K F ++ EW E +K V Sbjct: 81 AQARRARDEARIQLYSNIDPNAVKNQRLQQTDESILFKSLAMEWMEDRKAVIKETTYLRD 140 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 +F+ D+ P +G + I I+ +L ++ E RGA+E A ++ G +FR+AI G Sbjct: 141 LSVFEKDLFPALGNMPIDQIKGKDVLACAKKIEARGALEMAKRSIPLTGRIFRFAIRKGI 200 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 + +P P L +A+K + K+ L + P F + + + GS + A +++ T +RT Sbjct: 201 MENDPTPHLQEALKPRKVKHMARLDILEFPPFLERMDRYHGSPMIKTAIQLMTLTFVRTA 260 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 ELR M W +DFE ++ I A MK + H+VP+S Q +EL+ L +T ++VF Sbjct: 261 ELRMMEWDEIDFETKLWRIPADKMKMAQPHIVPLSKQAIELIEQLRPLTGNK-QYVFYNH 319 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 + K P+ NA+L VI+ +GY G +GHGFR ST ++E + DAIE+QLAH G +V Sbjct: 320 STAK-PMSSNALLCVIRTMGYNGKMTGHGFRGLASTTLHEQGYMHDAIEIQLAHRVGNAV 378 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDEKV 384 YNHAQ+LD R +MMQ W+D++D Sbjct: 379 SQAYNHAQHLDYRIKMMQEWSDFIDGLR 406 >UniRef50_B4RZR6 Prophage CP4-like integrase n=2 Tax=Proteobacteria RepID=B4RZR6_ALTMD Length = 412 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 129/397 (32%), Positives = 214/397 (53%), Gaps = 16/397 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI+ A+ K L D GL L V +G K W+L+Y+ GK+K L +G YP ++L+ Sbjct: 3 LTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYRFQGKQKTLAIGVYPEVSLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAI------YKEWYEHKKQVWSVGYATE 115 +AR+ AR+ + IDP K+ + +S S I + W+ +K WS G+A Sbjct: 63 DAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEGHAAR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +D+ L +G I +I P ++ +++ E RGA++ A + + V R+A+ TG Sbjct: 123 IWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFAVQTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF--SGSIVSLIATKVLRYTAL 233 +NPA +L+ ++ + + LP +++P F + L + G +++ +A ++L +T + Sbjct: 183 VLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLVHTFV 242 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R EL W D E ++ I A MK + H+VP+S Q + +L + EFVF Sbjct: 243 RPGELAGARWDEFDLEEKLWRIPAHRMKMKSDHIVPLSRQALAVLENTKPFSARF-EFVF 301 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEG------LESGHGFRHEFSTIMNEHEWPADAIEVQ 347 D+ K + +N + + I ++GY+G + HGFR S+I+NE + DAIE Q Sbjct: 302 PSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSILNETGFNPDAIERQ 361 Query: 348 LAHANGGSVRGIYNHA-QYLDKRREMMQWWADWLDEK 383 L+H VR Y H +YL++R+EMMQWW+D+LD Sbjct: 362 LSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLDSL 398 >UniRef50_Q0AH02 Phage integrase family protein n=2 Tax=Nitrosomonas eutropha C91 RepID=Q0AH02_NITEC Length = 393 Score = 430 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 130/388 (33%), Positives = 209/388 (53%), Gaps = 9/388 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AAKPKEK Y+L DGNGL L + G K W+ RY + KE +L++GKYP TL Sbjct: 3 LTDSAIRAAKPKEKQYKLTDGNGLTLLIYPDGSKHWRYRYLFNEKESMLSLGKYPETTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + + GI+P +K NSF A+ + W+ H K + + Sbjct: 63 QARSIHDGYKAILKQGINPSTHRKEEKRKAIVSVENSFEAVARTWWMHWKHAKTERHVAY 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + DI P IG + + M +E++ + + RGA++ A + CG+V RYA+ G Sbjct: 123 TLRRMEADIFPFIGAKPVNTLTAMHFIELVYKVQSRGALDIAKRVLTMCGQVMRYAVQHG 182 Query: 176 RAKYNPAPDLADA--MKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 ++ NPA D+ A +K +K N +P ++P + + + G ++ +A +++ T + Sbjct: 183 LSERNPAADIKPADILKKRKKVNHKRIPESELPDLLQKINQYDGQPLTRLALQLMTLTFI 242 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 RT EL W+ + F+N I MK R H+VP+SDQ + +L + ++ +F Sbjct: 243 RTSELIGGRWEEISFDNAEWRIPPERMKMRSQHIVPLSDQAITVLREIKALNSDP-VLLF 301 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 K + N ++ + +IGY+G +GHGFR ST+++E + IE+QLAHA Sbjct: 302 PSERRNGKTMSNNTIIYALYRIGYKGRMTGHGFRGLASTVLHEKNFDHKWIELQLAHAER 361 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLD 381 V YNHA YL++RR+MMQWW ++++ Sbjct: 362 DEVSAAYNHALYLEQRRKMMQWWGEYIE 389 >UniRef50_A1BGX1 Phage integrase family protein n=25 Tax=root RepID=A1BGX1_CHLPD Length = 419 Score = 430 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 131/390 (33%), Positives = 212/390 (54%), Gaps = 14/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q+ AKP EK Y+L DG GL+L V SG K+W+ +Y+ DGK+K+L +G+YP ++L Sbjct: 8 LSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQYPEISLA 67 Query: 62 EARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR + AR ++ DP K +A + +SF + +EW+ VWS G+A Sbjct: 68 NARKRREEARTLLANEQDPSEAKKAAKKAEALKDASSFELVAREWFGKNDPVWSPGHALT 127 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D+ P IG + +I + ++ + E RGA+E A + + CG+VFRYA+ TG Sbjct: 128 VMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQVFRYAVATG 187 Query: 176 RAKYNPAPDLADA--MKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 R +++P+ L + ++ + ++ A+ + G+ V A ++ Sbjct: 188 RLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSALQLTPLLF 247 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R EL++M W ++DFE + +I A MK R+ H+VP+S Q + +L L T +V Sbjct: 248 VRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPATGH-GRYV 306 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNE-HEWPADAIEVQLAH 350 F GR +P+ N++ ++ +GY+ +GHGFR TI++E + D IE QLAH Sbjct: 307 FTGRGS--RPMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEHQLAH 364 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 A YN +LD RR+MMQ WAD+L Sbjct: 365 AVRDPNGRAYNRTSFLDDRRQMMQAWADYL 394 >UniRef50_B6WV41 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV41_9DELT Length = 401 Score = 427 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 134/391 (34%), Positives = 215/391 (54%), Gaps = 8/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I AKPKEKPY++ D GLY+ V G K+W+L+Y+ +GKE++ +G YP ++L+ Sbjct: 5 LTDTAIRTAKPKEKPYKMADSGGLYVLVNPGGGKLWRLKYRFEGKERLFAIGTYPAVSLK 64 Query: 62 EARDKAWTARKDISVGIDP-----VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 EAR +A TA++ I+ G+DP +A + + +F + +EW++ K W+ +A ++ Sbjct: 65 EARARAVTAKEMIARGVDPCAARKAAKAEAIARSRTFEVVAREWHKKKLAGWTPNHARQI 124 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + P +G I ++ L V+ + E +G +E A + + CG+V RYA + G Sbjct: 125 IRRLETLAFPDLGSRPIAELGAPDFLAVLGKVERQGHLETARRLAQICGQVTRYARLAGM 184 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 +PA L +A+ + + +I A +A+ + G + A K++ Y +R+ Sbjct: 185 IVADPASHLTEALTTKPVRLHAAITEPREIGALLRAIDDYPGDVSVSFALKIMPYVFVRS 244 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W +D + I A MK R+ H+VP++ QVV + L +IT E VF G Sbjct: 245 SELRRATWAEIDLDRAEWLIPAERMKMRRPHLVPLARQVVGMFRALHAITGNR-ELVFPG 303 Query: 296 RNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + I + +L ++++GY + HGFR ST +NE + D IE QLAHA Sbjct: 304 TASVTRCISDVGLLNALRRLGYGRDEMTVHGFRSMASTRLNEMGYRPDVIEAQLAHAERN 363 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 SVR YN AQY+++RR MMQ WAD+LD + Sbjct: 364 SVRDAYNRAQYVEERRRMMQEWADYLDSLRD 394 >UniRef50_D0W4G5 Site-specific recombinase, phage integrase family n=4 Tax=Neisseria RepID=D0W4G5_NEICI Length = 428 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 138/392 (35%), Positives = 208/392 (53%), Gaps = 12/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +QI AKP EKPY+L DG GLYLY+ SG K+W+ + +GK K L++GKYP ++L Sbjct: 26 LNDRQIRNAKPAEKPYKLNDGKGLYLYINTSGGKLWRFDFACNGKRKTLSIGKYPTVSLA 85 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 EAR+ A TAR+ ++ G DP +AK+ N+F +I + W+ W +A Sbjct: 86 EARETAETARRMLAAGQDPSEAKQQEKEERKAAALNTFESIARRWHTDNLTRWKENHAAR 145 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F+ D+ P++G + IQ+I + ++ RG A K R G VF YA + Sbjct: 146 VLRYFETDVFPVVGAMPIQEIRVNHIKTLLDSVMARGVNNTAEKIREWAGAVFDYAALLE 205 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NPA L + N P LP +++ F L + IA ++ +R Sbjct: 206 LTESNPAHVLRRYIPSVPAGNRPALPREELTEFFCRLLLADIEPQNRIALMLIMLVFVRN 265 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRK-----IHVVPMSDQVVELLTTLSSITKPVSE 290 ELR W +DF+ R+ I A MK K H VP++D +ELL L +IT Sbjct: 266 TELRGGRWDEIDFDARLWVIPAERMKHEKTAPKPPHTVPLADWTLELLAELKAITGDT-P 324 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH 350 ++F R K I EN + ++ +GY+G+ + HGFR S+++NE + DAIE QLAH Sbjct: 325 YLFPSRTKKDGFISENTLGKIMNNMGYKGIATPHGFRALASSVLNEQGFNPDAIERQLAH 384 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 +R YN A Y+ +RREMM+W++ +L E Sbjct: 385 VEENRIRAAYNRADYMTERREMMEWYSGYLRE 416 >UniRef50_C0N6F7 Site-specific recombinase, phage integrase family protein n=2 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6F7_9GAMM Length = 401 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 215/398 (54%), Gaps = 17/398 (4%) Query: 2 LTVKQIEAAKP--------KEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVG 53 LT KQI+ KP KPY++ D +GLY+ VP+ G K W+ ++ +G E+ L++G Sbjct: 3 LTDKQIKNLKPGIRPDKSETNKPYKVSDSHGLYIEVPLKGSKRWRYKFYFEGTERKLSLG 62 Query: 54 KYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNN-----NSFSAIYKEWYEHKKQVW 108 YP ++L+EAR K RK I GIDP ++ N N++ + +EW+ K W Sbjct: 63 TYPKISLKEARQKRDDIRKKIDAGIDPSYERRKKRLNASVSGNTYEEVAREWHARNKANW 122 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + YA + + P IG +I I +LL VI+R DRGA+E A++ RR +F Sbjct: 123 TKKYADLTLSRLEQNAFPWIGDRQIDKITAPELLTVIKRVFDRGAIETAHRIRRLSNTIF 182 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKV 227 ++AI G + NPA L A + K+ + ++ +A+ +SG + A K+ Sbjct: 183 KFAIANGMTETNPAAALEGAFPTQKVKHHSAVTEPKKVAELLRAIDGYSGHFATRCALKL 242 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 R +R+ W ++D EN + I MK R+ H++P+S Q +E+L + +T Sbjct: 243 SALVMNRPINIRAAEWGDIDLENSVWRIHMGRMKSRRTHIIPLSRQALEILEEIRPLTGE 302 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEG-LESGHGFRHEFSTIMNEHEWPADAIEV 346 ++VF K +P+ EN + ++++G+ G S HGFR ST+++E + +D +E Sbjct: 303 -GKYVFPCMRSKARPMSENTICAALRRMGFSGEEMSAHGFRGMASTLLHEKGYNSDWVER 361 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 QLAH + S R YNHAQ+LD R +M+Q WAD+LDE Sbjct: 362 QLAHID-SSTRSAYNHAQHLDDRAKMLQEWADYLDELR 398 >UniRef50_A7MWW9 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MWW9_VIBHB Length = 410 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 109/387 (28%), Positives = 201/387 (51%), Gaps = 9/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 L+ Q++ K + K + + DG+GL L + +G K W Y K K + +GKYP ++ Sbjct: 8 LSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGLGKYPDVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L AR++ T R+ ++ GIDP + + + ++ + KEW+E K+ S YA Sbjct: 68 LATAREQRQTMRELVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQHSVSSDYA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + + I P +G L +++I ++ +R E +G++E + +R EV YA+ Sbjct: 128 DDIWRSLELHIFPNLGQLPLREILAPTVIAQLRPLEAKGSLETVKRVCQRLNEVMTYAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G+ + NP ++ K + K+ + + ++++ + +V+ A + +T Sbjct: 188 CGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFEFQLHTLT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W +DF ++ TI MK ++ H +P+SD V++LL + I+ ++VF Sbjct: 248 RPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFMKPISFE-HKYVF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + +V IK+ G+ G HG R ST +NE + DAIE+ LAH + Sbjct: 307 PSDAKAGSHMNSQSVNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELCLAHVDK 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 ++R IYN+A+YL++RR +MQWW++++ Sbjct: 367 NTIRDIYNNAEYLEERRNVMQWWSEYI 393 >UniRef50_Q8VQN9 CP4-like integrase n=87 Tax=Enterobacteriaceae RepID=Q8VQN9_ECOLX Length = 421 Score = 419 bits (1079), Expect = e-116, Method: Composition-based stats. Identities = 143/404 (35%), Positives = 217/404 (53%), Gaps = 22/404 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AAKP +K Y+L DG G++L V +G + W+LRY+I GKEK L +G YP ++L Sbjct: 3 LTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN----NNSFSAIYKEWYEHKKQVWSVGYATELA 117 EAR K ARK IS GIDP + K+A SF I + W+ KQ W+ ++ ++ Sbjct: 63 EARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQ-WAQSHSDKVL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 K + + P IG +I + LL +R E + E A++ ++R V RYA+ +G Sbjct: 122 KSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGII 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +YNPA D+A A+ ++++ P L ++P + ++ G V+ +A + +R+ E Sbjct: 182 RYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFIRSSE 241 Query: 238 LRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSIT 285 LR W +D +N + TI A K R H+VP+S Q V +LT L + Sbjct: 242 LRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTWA 301 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE--GLESGHGFRHEFSTIMNEHE-WPAD 342 +F G +D +KPI EN V ++ +GY+ GHGFR + + E W D Sbjct: 302 GENG-LIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD 360 Query: 343 AIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 A E Q++H VR Y H A++L++RR M+QWWAD+LD E Sbjct: 361 AGERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRE 404 >UniRef50_B7MX56 Integrase from prophage n=96 Tax=Gammaproteobacteria RepID=B7MX56_ECO81 Length = 419 Score = 419 bits (1078), Expect = e-116, Method: Composition-based stats. Identities = 115/390 (29%), Positives = 192/390 (49%), Gaps = 10/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKI--DGKEKILTVGKYPLMT 59 LT QI+AA+P +K Y L DG GL+L V SG K+W+ Y D K +L+ G ++ Sbjct: 14 LTTVQIKAARPAQKEYTLQDGGGLFLLVKPSGSKLWRFSYYRPSDKKRILLSFGSLEDVS 73 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHK-KQVWSVGY 112 L +AR + R IS G DP ++ N+F + WY+ K Q + Sbjct: 74 LADARKRRSEYRTLISAGTDPQDHERQKRETEARRQGNTFENVAAAWYQVKISQNLAPNT 133 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + D + P IG I + + +EV+ ++RG +E + +R EV YA Sbjct: 134 IKDIWRSLDKYVFPFIGNTPIDTLTARRFVEVLTPIKERGNLETLKRVLQRVNEVMDYAA 193 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 +G NPA ++ A KK+ P + +Q+P +AL+ + + + + T Sbjct: 194 NSGLIDANPAMNVRKAFPSPVKKHMPTIRPEQLPELMQALSVSATERQTRLLIEWQLLTV 253 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R E S W ++ + + TI A MK R+ HV+P+S Q + +L + I+ + +V Sbjct: 254 TRPAEASSTRWDEINLDAKQWTIPAGRMKMRRDHVIPLSGQAMAVLEAMKPISHHRN-YV 312 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 F D ++P+ ++++G+ G+ HG R FST NE + D IE LAH + Sbjct: 313 FPSLKDPQQPMNSQTANAALRRMGFAGVLVSHGLRAIFSTAANEEGFEPDVIEAALAHVD 372 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 VR YN + Y++KR +M+WW ++++ Sbjct: 373 TNEVRRAYNRSNYIEKRIVLMRWWGEFVEA 402 >UniRef50_C1D8D2 CP4 integrase protein n=12 Tax=Proteobacteria RepID=C1D8D2_LARHH Length = 452 Score = 419 bits (1078), Expect = e-116, Method: Composition-based stats. Identities = 127/422 (30%), Positives = 211/422 (50%), Gaps = 39/422 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 LT I+ KP++KPY+ DG GLYL + +G K W++ Y+I+GK+K L +G Y Sbjct: 7 LTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNYRINGKQKTLAIGVYCQFALV 66 Query: 58 ------------MTLQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKE 99 M+L +AR AR ++ GIDP + K+ + SF+ + +E Sbjct: 67 DDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAYVARE 126 Query: 100 WYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANK 159 W+ W +A + + I P IG + +I +L +R+ E + ++ ++ Sbjct: 127 WHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILDVTSR 186 Query: 160 ARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 R+ ++ RYA+ TGR +NP DL A++ R + P L +++P + + Sbjct: 187 LRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAAKLRP 246 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASV------------MKGRKIHV 267 ++ A + T +R+ ELR W+ +DF+ + I K R H+ Sbjct: 247 LTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMRTPHL 306 Query: 268 VPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHG 325 VP+ Q + L + +IT E VFAG +D KP+ E+ V + +K++GY + GHG Sbjct: 307 VPLCQQALALFREVHAITGRF-ELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVCGHG 365 Query: 326 FRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEK 383 FR + ++E + +AIE Q++H SVR Y H A++L +RR+MM WWAD+LD + Sbjct: 366 FRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFLDAQ 425 Query: 384 VE 385 E Sbjct: 426 RE 427 >UniRef50_A5W5R9 Phage integrase family protein n=2 Tax=Pseudomonas RepID=A5W5R9_PSEP1 Length = 393 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 145/386 (37%), Positives = 217/386 (56%), Gaps = 8/386 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT AKP+EK Y L D GL LYV +G K W R+ GK+ +++G YP + L+ Sbjct: 3 LTDTAARQAKPREKGYTLADSLGLTLYVAETGVKSWHFRFTWLGKQARISLGTYPEIGLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR + AR+D++ G DP ++++ +F +Y+EW E +K + Sbjct: 63 EARARRDEAREDVAQGKDPRESRREKKVERLGAKERTFRRVYEEWLEFRKGGLTESTVKV 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 ++ + D+LP G +I I+ ++ +IRR E RG++ A K R+ G+VFRYA+ G Sbjct: 123 ISNAMELDVLPAFGLRQIDSIKRADVITLIRRIERRGSITTAVKTRQWIGQVFRYAVAIG 182 Query: 176 RAKYNPAPDLADAMKG-YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + NP ++ + KN PFL ++PA KA+ + ATK+L TA R Sbjct: 183 MIEINPTAEMHAVTEKMAPHKNRPFLAFTEMPAIIKAIEESQSGLQLQCATKLLILTACR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E+R W +D + +I AS MK R+ HVVP+S Q VELL ++ I+ + ++VF Sbjct: 243 PAEVRKAEWSEIDLDTATWSIPASKMKMRRDHVVPLSRQAVELLRSMLPISGGL-KYVFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 R D +PI N + ++ + GY G +S HGFRH FST MN + D IE QLAHA+ Sbjct: 302 NRTDAVRPIGINYAVNLLDRCGYTGRQSPHGFRHLFSTEMNSRGYNKDWIERQLAHADSS 361 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWL 380 ++R +YNHA YL++RR+MMQ WAD + Sbjct: 362 AIRDVYNHATYLEQRRDMMQAWADLV 387 >UniRef50_C3K287 Putative phage integrase n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K287_PSEFS Length = 401 Score = 417 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 123/398 (30%), Positives = 194/398 (48%), Gaps = 17/398 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L AKP++KPYRL D GLYL V +G + W+L+Y+ GKEK L +G YP + LQ Sbjct: 3 LKDTNCRNAKPQDKPYRLYDEQGLYLEVQPNGGRYWRLKYRFLGKEKRLALGVYPEVGLQ 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR K AR ++ G DP ++ + + ++F ++ +W ++ W Y Sbjct: 63 EARRKRDDARVQLASGQDPSLQRRMAKVVSQLDHQHTFESVATQWLNIRESSWDPEYTRT 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + + P +G L I I L+E ++R RGA E A + + ++F +A G Sbjct: 123 VRQRLELNAFPWLGKLPISSISTPMLVENLQRIIKRGARETARRVAQIYKQIFEFAEAAG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTALR 234 N +L+ + R K+F + + + A KAL +++G++ A K+ R Sbjct: 183 ITPPNQIGNLSRTLPAKRVKHFAAVTDPEKLGALLKALDSYAGTMPVCCALKLAPLLFCR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKG-------RKIHVVPMSDQVVELLTTLSSITKP 287 +LR M W V+ + I MKG R H+VP+S Q + +L L +T Sbjct: 243 PGDLRHMEWSEVNLDAGEWLIPGHKMKGLTATKQDRPDHLVPLSQQAIAVLHELKPLTG- 301 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL-ESGHGFRHEFSTIMNE-HEWPADAIE 345 + F +P+ NAVL ++++ G +GHGFR TI E + D +E Sbjct: 302 RHRYAFPSARGGDRPMSNNAVLSALRRMDISGDEMTGHGFRATARTIGAEVLGFRPDLLE 361 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 QLAH + Y+ +L +RREMMQ WAD+LD Sbjct: 362 HQLAHTVKNPLGRAYDRTSFLPERREMMQIWADFLDSI 399 >UniRef50_B0C8U1 Phage integrase family protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C8U1_ACAM1 Length = 399 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 134/392 (34%), Positives = 200/392 (51%), Gaps = 12/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q+ AKPK YRL DG GL+L + +G K W+ RY+I GKE ++G YP + L Sbjct: 6 LTDLQVRNAKPKTGSYRLSDGGGLFLQITPAGGKHWKYRYRIQGKESTFSIGSYPELGLG 65 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR K AR+ ++ G++P K + N+F + EW+ K WS Y Sbjct: 66 EARAKHLEARRLVAQGLNPTTEAKRLQLSLQLAQGNTFEFVADEWFSQKNAGWSESYRGI 125 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + D+ P +G + +I ++L VIR E RGA A+K V YA+ TG Sbjct: 126 VRNRLNRDLNPSLGPRPVTEITAPEVLAVIRAVEARGANALAHKCLSIVRMVLGYAVATG 185 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 R N DL A+ K+ + ++ + +A + GS+V A ++ T +R Sbjct: 186 RCDRNVVNDLGGALAPVDAKHRAAITDPKRVGELMRMIADYRGSMVVRAAMRMGALTFVR 245 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV-SEFVF 293 ELR+M W +++ + V K H+VP++ Q +E+L TL IT S +VF Sbjct: 246 PGELRTMQWSQINWNTKEWRF--QVSKTETDHIVPLATQAIEILQTLQLITGNGTSRYVF 303 Query: 294 AGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTI-MNEHEWPADAIEVQLAHA 351 N + + NAVL ++ +G + SGHGFR T+ E + + IE QLAHA Sbjct: 304 PSANSMTRHMSNNAVLAALRAMGITKDEMSGHGFRAMARTLIAEELHYRPELIEHQLAHA 363 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 G + YN ++L++RREMMQ WAD+LDE Sbjct: 364 VRGPLGRAYNRTEFLEERREMMQAWADYLDEL 395 >UniRef50_B4X5T7 Site-specific recombinase, phage integrase family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5T7_9GAMM Length = 398 Score = 415 bits (1069), Expect = e-115, Method: Composition-based stats. Identities = 121/392 (30%), Positives = 210/392 (53%), Gaps = 13/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ +I AAKP++K Y + DG G++L + G K W+ +Y+ +GK+K L++G YP +L+ Sbjct: 6 LSDVKIRAAKPQDKLYSISDGEGMFLEISPKGGKWWRFKYRFNGKQKRLSLGTYPSTSLK 65 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQ--VWSVGYA 113 ARDK AR+ ++ G+DP + +K N+F+ + +EW ++K + W+ Sbjct: 66 AARDKRQQARELLASGVDPAQQRKTEKLATETALRNTFAGVAEEWAQNKVRSEKWTPTTE 125 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + D+ ++P +G I +I +L V++ + + AN+ R E+F +A+ Sbjct: 126 KKRRIWLDNGLMPYLGSRPISEITTAELWGVLQ-HTQKTSGYTANRLRGMASEIFNFAMA 184 Query: 174 TGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGRA NPA L + ++K+ L D++ +A+ ++ + A ++ Sbjct: 185 TGRADNNPALPLQGQIAVKKEKHRLAILEPDEVGKMLRAIDGCQAAVTTKAAARLAPLVF 244 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R ELR W +D + + +I A MK R+ HVVP+S Q V +L + +T S +V Sbjct: 245 VRPGELRHAEWSEIDLKKALWSIPAEKMKMRESHVVPLSRQAVAILKEIQPLTG-SSGYV 303 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHA 351 F G +PI +N + ++K +GY+G + HG+R T+++E + D IE QLAH+ Sbjct: 304 FEGTK-PGEPISDNTLNKLLKALGYKGKMTQHGWRAIARTLLDEVLDVRVDWIEHQLAHS 362 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 + YN +L+ R MMQ WAD+LD+ Sbjct: 363 VRDANGRAYNRTSHLEGRIGMMQLWADYLDKL 394 >UniRef50_Q6AR70 Probable prophage integrase n=1 Tax=Desulfotalea psychrophila RepID=Q6AR70_DESPS Length = 399 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 125/397 (31%), Positives = 201/397 (50%), Gaps = 19/397 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L Q+ AK P RL DG GL V SG K W RY++D K+++ +G+YP ++L+ Sbjct: 4 LKALQVRNAK---DPCRLSDGLGLSFEVTKSGVKRWLYRYRLDDKQQMCVLGRYPELSLE 60 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN-------------NSFSAIYKEWYEHKKQVW 108 +AR AR + G +P + ++ SF I EW E+ K+ W Sbjct: 61 QARKIHREARALVREGCNPARERRRKKQEVISKEKAERDDRSKSFEYIALEWIENNKESW 120 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 S + + +++ G + I P +L IR E+RG++E K +R VF Sbjct: 121 SPSHQQAVLASLRNNVFSAFGNTPVDTITPPDVLRTIRAIENRGSLEIVRKVLQRTNAVF 180 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL-ATFSGSIVSLIATKV 227 RYAI TGRA YNPA D+ A+K ++ P + ++ + + + + + +A + Sbjct: 181 RYAIQTGRATYNPAADMQGALKAKTVEHMPAVFDSELAQLLQDISSNQKIHVTTKLAIQF 240 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 TA R E+R+ W+ V+ + I A MK R+ H+VP+S Q + +L ++ Sbjct: 241 TALTACRGGEVRNARWQEVNLDTNEWHIPAERMKMRRAHIVPLSIQALAILHRAGALWGE 300 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEV 346 FVF D+ KP+ +NA+ + +GY G + HGFR FS++ +E + ++ IE Sbjct: 301 DG-FVFPSIRDRSKPMSDNAMGKAFRDMGYRGKATPHGFRSSFSSMAHEQSGFASEVIEK 359 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 LAH V+G YN A+YL++RRE++QWW + L Sbjct: 360 SLAHEEKNKVKGAYNRAEYLEQRRELLQWWGEKLHRL 396 >UniRef50_Q93UI5 Integrase-like gene 1 n=1 Tax=Escherichia coli RepID=Q93UI5_ECOLX Length = 401 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 133/389 (34%), Positives = 206/389 (52%), Gaps = 12/389 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ + P R DG G+YL + SG + W+++Y+ GKEK+L G YPL+ ++ Sbjct: 3 LTDLKVRSLT---TPGRYADGGGMYLQITASGGRYWRMKYRHGGKEKLLAFGVYPLVGIK 59 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 EARDK + A++ +S G DP KK + N+F A+ ++W +H+ W + Sbjct: 60 EARDKLFYAKQALSRGEDPGATKKLAKFQAEQDAANTFKAVAEDWLDHQAGRWEAITLSR 119 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + D+ P +G L I I P Q+++V+++ E RGA E A + +R +FRY Sbjct: 120 TRASLEADVYPTLGSLPISSITPRQVMDVVKKIEKRGASEIATRVLQRIKSIFRYGTTHQ 179 Query: 176 RAKYNPAPDL--ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 R + N DL ++ +K R ++ L Q+P F K LA++ G ++ A +L TA Sbjct: 180 RIERNTMADLVPSEILKPRRVQHRAALAPAQLPEFLKKLASYEGEPHTVNALHLLMLTAA 239 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E+R W +D + ++ I MK R HVVP+S + V + + ++ + VF Sbjct: 240 RPGEVRGARWDEIDLKAKLWRIPPERMKMRSEHVVPLSSEAVAAIEAMRPLSGNR-DLVF 298 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 KP+ EN + ++GY+ L + HGFR FST+ NE W ADAIE QLAHA Sbjct: 299 PSPFYPSKPLSENTFNSAMARMGYKYLATAHGFRALFSTVANESGWSADAIERQLAHAER 358 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 VR Y+ L +R +MM WWA +L E Sbjct: 359 NQVRAAYDRGVRLPERVKMMNWWAQYLAE 387 >UniRef50_B1JDS4 Integrase family protein n=3 Tax=Pseudomonadaceae RepID=B1JDS4_PSEPW Length = 402 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I A+P++K YR+ D GL L V +G K+W+LRY+ +GK K+L +G YP +TL Sbjct: 3 LTDTAIRTARPRDKLYRIADAQGLCLEVTTAGGKLWRLRYRFEGKAKMLGLGTYPSVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVK-----AKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 AR++ ARK +S GIDP A + + + +EWY++ + W+ A++ Sbjct: 63 HARERRDAARKLLSQGIDPSAYKQQEKAAAEAQALTLETLAREWYDYNQPRWAPATASKA 122 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + DI P+IG +++ +L++++R+ E R A A K R+ ++FR+ + G Sbjct: 123 LQYLESDIFPLIGKRPAAEVQRPELVDLVRKIEQREAFNVARKVRQWLSQIFRFGLAKGV 182 Query: 177 AKYNPAPDLAD-AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NPA DL A R ++ P + ++P + L S IA ++L TA+R Sbjct: 183 VAGNPATDLDVVAAHAPRTRHHPHVSEAELPELLEKLEAAQCDFTSKIAIRLLLLTAVRP 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D E+ TI A+ MK R+ H+VP+ Q V LL L +T F G Sbjct: 243 GELRLAPWDEFDLESATWTIPAARMKARRPHIVPLPRQAVNLLRALHELTG-TYPLAFPG 301 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 RND+ +P+ EN V + +GYEG ++GHGFRH ST +N + D IE QLAH + S Sbjct: 302 RNDRSRPMSENTVNKALSTMGYEGRQTGHGFRHLLSTSLNTRGYNRDWIERQLAHGDQDS 361 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +R YNHA YL++RREMMQ WAD +D E Sbjct: 362 IRDTYNHAHYLEQRREMMQTWADHVDALAE 391 >UniRef50_C8KXV2 Prophage CP4-57-like integrase n=1 Tax=Actinobacillus minor 202 RepID=C8KXV2_9PAST Length = 406 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 110/395 (27%), Positives = 189/395 (47%), Gaps = 12/395 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMT 59 L +I+ AKP++KPY + DG GL+L V +G K W+ Y K + +G YP +T Sbjct: 8 LVDTEIKKAKPEDKPYTMTDGQGLFLIVSPTGSKSWRFNYYRPISKKRAKIALGMYPAIT 67 Query: 60 LQEARDKAWTARKDISVGIDPVKA------KKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR + ++ GIDP + +K N+ AI ++W + K+ Sbjct: 68 LSKARALRDEYKHLLANGIDPQEHCKQLELQKLQFKQNTLFAIAEKWKQKKETEVKEKTL 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 +M + I P +G L I +I P++L IR DRG + E+ +A+ Sbjct: 128 KPRWRMLEKYIFPELGDLPISEISPLRLSNTIRPVFDRGIANTGLVIIQMVNEIMVFAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G ++N ++A + K+ P + +++P F AL + +V + + T Sbjct: 188 LGIIEFNKCSNVASTFNVKKTTKHQPTIRPEKLPEFMSALRDSAVDLVVKLLIEFSLLTM 247 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R E + W ++F++ + I A MK +K VP+S Q ++LL L IT S F+ Sbjct: 248 VRPNEAANAKWDEINFDDALWHIPAERMKMKKAFTVPLSSQAIKLLNKLKQITG-RSRFI 306 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE--HEWPADAIEVQLAH 350 F +KP+ I++IGY G + HG R ST ++E + + IE L+H Sbjct: 307 FQSPRAPQKPMSSVTANAAIRRIGYNGKLTSHGLRSIASTYLSEKFIDINVEIIEACLSH 366 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +R YN + YL++R+ +M W +++E ++ Sbjct: 367 QGKNPIRNAYNRSTYLEQRKLLMADWGQFVEESMK 401 >UniRef50_B9Z434 Integrase family protein n=2 Tax=Neisseriaceae RepID=B9Z434_9NEIS Length = 395 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 136/391 (34%), Positives = 204/391 (52%), Gaps = 8/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 L+ +I +KP +KPY+L DG GLYL + +G K W+ RY K+ I T+G+YP ++L Sbjct: 3 LSDVKIRTSKPLDKPYKLQDGKGLYLEIRPTGAKFWRYRYWTSPTKDGIYTIGEYPDVSL 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR + R + G +P KK + + + +EW WS Y Sbjct: 63 AEARAERERVRALVKEGKNPTAEKKLDKLRSQKETATTLAVVAEEWKVVNWPHWSETYRK 122 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ K D+L G L I+++ QLL I + ++RGA A R+ G +FR+AI T Sbjct: 123 QVEKHLQRDLLDEYGELPIREVTSAQLLAAISKIDERGAPSIARLVRQWAGSIFRHAIAT 182 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA +P L A++ ++ L AD++P F KAL + G ++ +A + T +R Sbjct: 183 LRADSDPTYPLRGALRMPPTRHNAHLSADELPGFLKALDAYKGFGLTRLAVNLQMLTLVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T+ELR W D + I MK R H+VP+ Q V ++ L +T +VF Sbjct: 243 TQELRLAEWAEFDLDAAEWRIPPEKMKMRDPHIVPLPKQAVAIMRELEPLTGRR-RWVFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + + +L VI+ +GY+G +GHGFR STI++E W D IE QLAH Sbjct: 302 NVRNHDTGMTNTTILRVIEILGYKGRATGHGFRATASTILHEQGWNTDIIERQLAHLERN 361 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 V+ YNHA YL +RREM+Q WAD+LD + + Sbjct: 362 KVKAAYNHAGYLKERREMLQAWADYLDLQRD 392 >UniRef50_B9MGW9 Integrase family protein n=1 Tax=Diaphorobacter sp. TPSY RepID=B9MGW9_DIAST Length = 428 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 133/412 (32%), Positives = 209/412 (50%), Gaps = 30/412 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKV-WQLRYKIDGKEKILTVGKYPLMTL 60 L+ I + KP + +L DGNGLYL + V+G K W+ YK+ GK K +++G YP +L Sbjct: 6 LSDTTIRSVKPGDPRRQLTDGNGLYLLLYVNGGKHGWRFDYKVQGKRKTISLGTYPATSL 65 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNN------------------SFSAIYKEWYE 102 AR KA AR+ ++ GIDP +K+ +F A+ +EW+E Sbjct: 66 SLARAKANAARELVAAGIDPSADRKSKKAAEKKVHEDAKLVAAGKPLNGTFEAVAREWFE 125 Query: 103 HKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR 162 + W+ YA ++ + + D+ P IG + D+ +LL V+RR EDRG +E A++A Sbjct: 126 VRSPEWAAKYAEKVLRRLEADVFPHIGIRPVGDVTAPELLAVLRRIEDRGVIETAHRAHE 185 Query: 163 RCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVS 221 C ++FR+A+ G AK + A DL ++ R ++FP L ++ +A + G+ V Sbjct: 186 SCSQIFRFAVGAGLAKGDVARDLKGLLRKPRTRHFPAILCPKRLGELLRACDGYVGTHVV 245 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQV 274 A + LR ELR W ++ TI MK H+VP+ Q Sbjct: 246 RAALSLAPMLLLRPGELRHARWDEINLNTATWTIPGERMKREREGKLNGMPHIVPLPRQA 305 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTI 333 V++L L IT E VF G +P+ EN V ++ +G+ +GHGFR T+ Sbjct: 306 VQVLRELHPITG-RGELVFRGERHHHRPMSENTVNAALRAMGFGADEVTGHGFRATARTL 364 Query: 334 MNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ++E ++ IE QLAH+ S+ YN +YL +RR+MMQ WA++L+ Sbjct: 365 LDERLGIASEIIEAQLAHSVKDSLGRAYNRTEYLVQRRKMMQQWANYLEALR 416 >UniRef50_A1VQL7 Phage integrase family protein n=2 Tax=Burkholderiales RepID=A1VQL7_POLNA Length = 413 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 125/402 (31%), Positives = 205/402 (50%), Gaps = 21/402 (5%) Query: 2 LTVKQIEAAKPKEKPY--RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT + K P + DG G+YL V +G K W++ Y+ GK K L +G YP ++ Sbjct: 3 LTDIFTKNTKHSGAPAGDKHTDGGGMYLLVTKAG-KYWRMNYRFAGKRKTLALGVYPAVS 61 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYA 113 L EAR ARK ++ IDP AK+ N+F A+ +E++ K WS G+A Sbjct: 62 LAEARQGRDKARKLLAQDIDPSAAKQEDRQATATAAANTFEAVAREFHALKAGGWSEGHA 121 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 T+ +M + + P IG L + I+ LL +R+ E +G + A + G+VFRY + Sbjct: 122 TKWLRMNELYLFPHIGTLPLSTIKAPTLLAALRKVEKKGILSTAQDLQAMAGQVFRYGVQ 181 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGR + NP DL A++ + K+F L + A +A+ ++G +L A K+ Sbjct: 182 TGRCESNPGVDLKGALQPHIAKHFAAILDPVEAGAMLRAIDAYTGQPETLAALKLSALFF 241 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQVVELLTTLSSIT 285 R +R+M W +D + +++TI A MK K H VP++ Q +++L ++ +T Sbjct: 242 QRPGNIRAMEWAWIDLDGQMLTIPAKSMKSSKHEKANGKPHTVPLARQALDVLKSIKQLT 301 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNE--HEWPAD 342 +VF G ++P+ + + ++++ Y HGFR T+M E P D Sbjct: 302 GH-GRYVFPGARTGERPMSDGTINAALRRLDYGNNEHVAHGFRAMARTMMAERLSGIPQD 360 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +E QL H G + Y+ ++YL +R++MMQ WAD+LD+ Sbjct: 361 MVEAQLGHGKKGPLGSAYDRSEYLPQRQQMMQTWADYLDKLR 402 >UniRef50_C5V4I9 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4I9_9PROT Length = 410 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 136/397 (34%), Positives = 212/397 (53%), Gaps = 17/397 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKPK+KPY+L DG GL+L V ++G K W+L Y+ K+K L +G YP ++L Sbjct: 3 LTELAVKNAKPKDKPYKLSDGGGLFLLVQINGGKYWRLAYRFADKQKTLALGIYPDISLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR++ ARK ++ DP KK + NSFSA+ KE ++ K +W+ G+A + Sbjct: 63 DARERREQARKLLANDTDPSAIKKETKRILQTATVNSFSALAKELHKVKAPMWTEGHAKQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + P+IG + +IEP++L+ ++R E +G E ++ + F+YAI G Sbjct: 123 WMLNMEKYAFPVIGDRPVAEIEPLELVGIMRNVEAQGTFETRDRLLQTISSTFKYAIAIG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF----SGSIVSLIATKVLRYT 231 +AKYNPA + +NF L D+IPAF +A + S++++ A ++L T Sbjct: 183 KAKYNPAEIRLALADRPKVENFACLSTDEIPAFLRAFDDYQERGKVSLIAVAAFRLLLLT 242 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMK------GRKIHVVPMSDQVVELLTTLSSIT 285 A R+ E+R W + D + I A RK H VP+SDQ + +L L +T Sbjct: 243 ATRSSEVRFSKWADFDLDAGCWIIPAEQTGRKGKHGKRKPHAVPLSDQAIAVLRDLYPVT 302 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 E VF RN + I EN V +I+ +GY+G ++GHGFR T + + + +E Sbjct: 303 GH-GEHVFPSRNGMGRVISENTVNKIIETMGYKGRQTGHGFRSLARTTLGDMGHRWEVLE 361 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 L+HA Y Y ++RR +MQ WAD+LD Sbjct: 362 AMLSHALENQTAAAYVRTTYFEERRGIMQKWADYLDA 398 >UniRef50_Q0I4F8 Integrase n=1 Tax=Haemophilus somnus 129PT RepID=Q0I4F8_HAES1 Length = 413 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 106/389 (27%), Positives = 191/389 (49%), Gaps = 9/389 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTL 60 LT +I AKPK+K Y L DG GLYL V +G K+W+ Y + K K++++G YP +L Sbjct: 8 LTNTKILNAKPKDKDYTLSDGQGLYLLVKSNGSKLWRFNYYDLLKKRKLISLGSYPETSL 67 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYAT 114 +AR K R ++ I+P N+ + K+W E K Sbjct: 68 LDARTKRDEYRALLAKDIEPQDYIFKQKEQAIFNQCNTLIGVAKDWREMKSSKVEADTMK 127 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + ++ + + P +G + I DI +++ D E K R E+ R+A+ Sbjct: 128 DQWRLLELHLFPHLGNMPISDITAPFTRMKLQKLADDKKFEMLKKVIRGLNEIMRFAVNA 187 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 G ++NP +L + ++ P + D++P F +++ + + + + T +R Sbjct: 188 GLIQFNPTANLQELFPSGEVQHRPSIHPDKLPKFLESVNKANIQLQTRCLLEWQLLTMVR 247 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKG-RKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 E +W+ +DFEN+ I MKG ++ H+VP+S Q + +L + IT +FVF Sbjct: 248 PSEAAGTMWREIDFENKTWLIPKDRMKGKKRSHLVPLSQQAINILNIMRPITGN-CDFVF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 D + + ++++GY+G+ HGFR ST +NE+E+ + IE L+H G Sbjct: 307 PKNGDLTTNMSSETINKALRKMGYQGILCAHGFRSIASTALNENEFNVEIIEALLSHVKG 366 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 VR Y+ + Y ++R+ ++WW +++++ Sbjct: 367 DKVRTAYDRSTYEKQKRQYIEWWGNFVEK 395 >UniRef50_P08320 Integrase n=31 Tax=root RepID=VINT_BPP4 Length = 439 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 140/402 (34%), Positives = 217/402 (53%), Gaps = 24/402 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKI--DGKEKILTVGKYPLMT 59 L +Q+E AKPK+K Y++ DG GLYL V G K W+++Y+ D KE L G +P +T Sbjct: 7 LNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVT 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN----SFSAIYKEWYEHKKQVWSVGYATE 115 L +AR K A+K + GIDP +K + N +F AI +EW+ K+ WS + + Sbjct: 67 LAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAYTFEAIAREWHASNKR-WSEDHRSR 125 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + I P IG +I+ ++ LL I++ + G + A + ++R + RYA+ Sbjct: 126 VLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQND 185 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NPA D+A A+ + +++P LP+ + P F LA + G +++ IA K+ T +R+ Sbjct: 186 YIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVKLSLLTFVRS 245 Query: 236 KELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSS 283 ELR W DF+ + I A MK ++ H+VP+S Q + LL L Sbjct: 246 SELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQLKQ 305 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEHE-WP 340 I+ E +F G +D K + EN V ++ +GY + GHGFR + E W Sbjct: 306 ISGDK-ELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS 364 Query: 341 ADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 DAIE QL+H+ +VR Y H +++LD+RR MMQWWAD+LD Sbjct: 365 DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLD 406 >UniRef50_A0KW55 Phage integrase family protein n=30 Tax=Gammaproteobacteria RepID=A0KW55_SHESA Length = 411 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 106/387 (27%), Positives = 188/387 (48%), Gaps = 10/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT K + AK + KPYRL DG LYLYV +G K W+ RY K +G YP ++ Sbjct: 8 LTAKAVLNAKAEAKPYRLSDGGNLYLYVRTAG-KTWEFRYIRPSTSKPTYFGLGSYPDVS 66 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L EARDKA ARK+++ GIDP K K A+ N + I + W + K+ Sbjct: 67 LAEARDKALEARKNLAEGIDPQLLKVENKLKAATENAQTLKHIAQMWMDSKQGSIKPKTI 126 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P +G + I + + ++ E +G +E + + E+ +++ Sbjct: 127 EGNWRKLELYAFPKLGSIAISRLTAPIAIAALKPLEQKGHLETVKRTAQLLNEIMNFSVN 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 +G NP + + + + ++ L ++ + +A + + + + +T Sbjct: 187 SGYIHANPLSGIREVFRKSKVEHLKALKPAELAELLQTIANANLLLTTRCLIEWQLHTMT 246 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W+ +DF+ ++ TI S MK + H++P+++ + +L T+ I+ S+FVF Sbjct: 247 RPNEAAGARWEEIDFDAKLWTIPESRMKMNREHIIPLTEHTLTILETVKPIS-EQSQFVF 305 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 D +K + + ++G +G +GHG R ST +NE + D IE LAH + Sbjct: 306 PSSKDPQKHTDPETINKALGRMGLKGRTTGHGLRSLASTTLNEQGFDGDVIEAALAHVDK 365 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 +R YN YL++R ++M+WW++ + Sbjct: 366 NQIRSAYNRTTYLERRTKLMEWWSNHI 392 >UniRef50_C7SIL5 Integrase B n=113 Tax=Gammaproteobacteria RepID=C7SIL5_ECOLX Length = 420 Score = 407 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 124/405 (30%), Positives = 224/405 (55%), Gaps = 23/405 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I KP +KP+++ D +GLYL V G + W L+Y+I+GKE + +G YP ++L Sbjct: 3 LTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNS----FSAIYKEWYEHKKQVWSVGYATELA 117 +AR + RK +++ I+PV+ + A + + F + W++ ++ WS A L Sbjct: 63 DARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRK-WSQNTADRLL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ I P+IG L + +++P +++++R E++G +E A++ R+ + R+A+ G Sbjct: 122 ASLNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNIMRHAVHQGLI 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF-SGSIVSLIATKVLRYTALRTK 236 NPA +L ++++P LP +++P + + + G ++ +A ++ + +R+ Sbjct: 182 DTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRLAVLLMLHVFIRSS 241 Query: 237 ELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSI 284 ELR W +DF NR+ TI A+ K R H+VP+S+Q + +L + I Sbjct: 242 ELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMSHIVPLSEQSIAILKQIKDI 301 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEHE-WPA 341 T +E +F G ++ KP+CEN V ++ +GY + GHGFR + + E W Sbjct: 302 TGN-NELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360 Query: 342 DAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 DA+E Q++H +VR Y H A++L+ R+ MMQWW+D+L+ E Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRE 405 >UniRef50_Q3JN19 Prophage CP4-like integrase n=62 Tax=Proteobacteria RepID=Q3JN19_BURP1 Length = 462 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 126/392 (32%), Positives = 204/392 (52%), Gaps = 13/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + AKP++KPY+L DG+G++L V +G K W+L Y+ GK+K L +G YP ++L Sbjct: 60 LSDLAVRNAKPQDKPYKLTDGDGMFLLVQPNGGKYWRLAYRYLGKQKTLALGVYPEVSLA 119 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR + AR+ ++ G DP + KK + +NSF + W E ++ Sbjct: 120 LARQRRAEAREQLAKGADPGETKKADRRAARLAADNSFEVVALAWLEERRPYVEPRQHER 179 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 +D+ P +G I DI+ ++L V++R + RGA A++ R G VF Y I G Sbjct: 180 TLVRLKNDVFPWLGKRPIADIDAPEILAVLKRIDSRGARFTAHRIRSEIGRVFVYGIKEG 239 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 K NPA L A+ + +F + Q+ +A FSG+ L A K+ +R Sbjct: 240 HCKANPAASLVKAIPPAQTTHFASITEPAQVGEMLRAFDGFSGTFPVLCALKLAPMLFVR 299 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W + D E V K + H+VP++ Q V++L L ++T ++VF Sbjct: 300 PGELRKAEWSHFDLEKAEWRY--LVTKTKTEHLVPLATQAVKILKELHAVTG-SGQYVFP 356 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGL--ESGHGFRHEFSTIMN-EHEWPADAIEVQLAHA 351 G K++P+ + A+ ++++GY+ +GHGFR TI++ E E + IE QLAH Sbjct: 357 GARSKQRPMSDAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHT 416 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 ++ YN +++ +R MMQ WAD+LD+ Sbjct: 417 VPDTLGRAYNRTKFIKERCAMMQKWADFLDQL 448 >UniRef50_B8F555 CP4-57 prophage, integrase n=1 Tax=Haemophilus parasuis SH0165 RepID=B8F555_HAEPS Length = 405 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 108/394 (27%), Positives = 186/394 (47%), Gaps = 11/394 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L +I+ AK K+KPY L DG GL+L V ++G K W+ Y I K + +G YP + Sbjct: 8 LVDTEIKKAKAKDKPYTLTDGGGLFLLVSITGSKSWRFNYYQPITKKRTKMALGMYPTVN 67 Query: 60 LQEARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR +K ++ IDP + +K N+F AI ++W + K Sbjct: 68 LSKARALRDEYKKLLADDIDPQQYIKNKQQEKLQETQNTFLAIAEQWKQKKSAEIKPATL 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P +G + I I+P+Q+ E++ RG + E+ R+A+ Sbjct: 128 KNHWRRLELYAFPTLGNISITMIKPLQVTELVTPLFLRGVNSTGVLLLQTINEIMRFAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G ++N D+AD + ++ P + + +P F AL ++ + T Sbjct: 188 RGIIEFNKCADIADTFVKSKSEHHPTIRPEHLPEFFAALRNSHADLIIKSLIEFSLLTIA 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E + W +DFE + I A MK ++ +P+S Q V++L L IT S ++F Sbjct: 248 RPSEAANAKWAEIDFEQSLWNIPAERMKMKQPFTIPLSIQAVKILKKLQVITG-RSLYIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE--HEWPADAIEVQLAHA 351 +PI + IKQ+GY+G + HG R +T ++E + + IE L+H Sbjct: 307 QSIKKPSQPIGKQIANNTIKQMGYKGKLTSHGLRSIANTYLSEKFIDLNVEIIEACLSHK 366 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + VR YN + YL++R+ +M W +++E ++ Sbjct: 367 SQNQVRNAYNRSTYLEQRKPLMNDWGQFVEESMK 400 >UniRef50_Q3SHC8 Probable cp4-like integrase protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SHC8_THIDA Length = 425 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 131/396 (33%), Positives = 205/396 (51%), Gaps = 16/396 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ AKP +KPY++ D GLYL V +G K W++ Y+ GK K L +G Y ++L Sbjct: 19 LTDTAVKKAKPGDKPYKMADEKGLYLLVNQAG-KYWRMDYRFLGKRKTLALGVYSDVSLA 77 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHK-KQVWSVGYAT 114 AR K AR ++ G DP + +K + NSF A+ +EW+ K K+ W+ A Sbjct: 78 RARQKRDDARAMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQSTAD 137 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + + + P +G L I ++ QLL ++R+ E+RG A + R CG++FRY + T Sbjct: 138 KTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGVAT 197 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSG-SIVSLIATKVLRYTA 232 GRA+ NPA L A+ + P + + AF + L +G V+ A T Sbjct: 198 GRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAYFALLTF 257 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKI---HVVPMSDQVVELLTTLSSITKPVS 289 +R +E R W+ +D++ + + A MK K H VP+S Q + LLT L ++T S Sbjct: 258 VRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGH-S 316 Query: 290 EFVFAGRNDKK--KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 ++F + I EN V ++ ++GY+G + HGFR +I++E W +A+E Q Sbjct: 317 PYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAMERQ 376 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 L H S Y +++L +RR MMQ WAD D Sbjct: 377 LDHKETDSTVAAYARSEHLPERRNMMQAWADTCDAL 412 >UniRef50_Q4QNN7 Prophage CP4-57-like integrase n=4 Tax=Haemophilus influenzae RepID=Q4QNN7_HAEI8 Length = 403 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 106/394 (26%), Positives = 186/394 (47%), Gaps = 11/394 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L +I+ AK KPY L DG GL+L + +G K W+ Y I K +++G YP +T Sbjct: 8 LVDTEIKKAKASNKPYTLTDGYGLFLIISPTGSKSWRFNYYRPITKKRAKISLGLYPAIT 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L +AR+ R+ ++ IDP + K NN+F AI +W + K Sbjct: 68 LSKARELREQYRQLLANKIDPQEYIKQHELLQLQRQNNTFFAISTQWKQKKVSEIKSVTL 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P +G I +I P QL + + +RG E+ +A+ Sbjct: 128 KSRWRTLEKYAFPYLGDNPIAEITPQQLHDTVIPLFERGVSHTGKLVIALVNEIMNFAVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G ++N +++ A R + P + +++P F AL ++ + T Sbjct: 188 KGIIEFNKCINVSKAFNVNRTTHHPTIRPEKLPEFMSALRHSHIDLMVKYLIEFSLLTIT 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E + W +DFE + I A MK +K +P+S QV+++L L +I+ S F+F Sbjct: 248 RPSEAANAQWNEIDFEKSLWNIPAERMKMKKAFTIPLSLQVLKILNKLKNISG-RSRFIF 306 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE--HEWPADAIEVQLAHA 351 + ++P+ ++ IK++GY+ + HG R ST ++E E + +E L+H Sbjct: 307 QSQRYPERPLHSSSANAAIKRVGYKDQLTSHGLRSIASTYLSETFTEMNLEILEACLSHQ 366 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + VR YN + YL++R+ +M W D+++E ++ Sbjct: 367 SKNQVRNAYNRSTYLEQRKPLMNAWGDFVEECMK 400 >UniRef50_D1B120 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B120_SULD5 Length = 419 Score = 405 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 118/408 (28%), Positives = 201/408 (49%), Gaps = 25/408 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 LT +++ +K +EK YRL DG GLYL V +G K W+L Y + +G +++G YP +TL Sbjct: 8 LTDTELKKSKIQEKTYRLTDGAGLYLLVEPNGSKGWRLDYTRPNGGRNTISLGTYPTITL 67 Query: 61 QEARDKAWTARKDISVGIDPVKAKK----------------ASSNNNSFSAIYKEWYEHK 104 EAR+K +K I G+DP +K N+F + ++++E Sbjct: 68 CEAREKRDELKKQIKKGVDPSLERKGVKELQREEKEADHAEEERKQNTFEKVARDFFESI 127 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 Y + ++ I P +G + I + + ++E + R + +E A + Sbjct: 128 TIELVPKYHSSKLARLENHIFPYMGNIPIDQVSRLMIIEHLERLKAANKIETARRILNII 187 Query: 165 GEVFRYAIVTGRAKYNPAPDLAD--AMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVS 221 +V+RYA+ A +N D+ + ++FP + +I + + + G I + Sbjct: 188 EQVYRYAVTHELAPHNIIADIDKRYVIGKKEVRHFPTITDPVEIGKLVRMIDEYPGDIST 247 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTL 281 A K+ TA R +R W D E + I A MK ++ H++P+ Q+ +L L Sbjct: 248 KYALKLAILTAQRPYNIRFAEWNEFDLERDVWQISAEKMKMKRPHIIPIILQIKTILREL 307 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMN----E 336 TK S+++F +PI EN + ++++GY + HGFR FSTI N E Sbjct: 308 EPFTKNRSQYLFPALTSNVRPISENTMNQALRRLGYTKEEIVSHGFRAMFSTIANEHIPE 367 Query: 337 HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H + +D IE LAH+ +G YN A+YL++RR +++WWA++LD+ Sbjct: 368 HGFHSDIIERHLAHSEQNKTKGAYNRAEYLNERRGLIEWWANFLDKVR 415 >UniRef50_A1SRI6 Phage integrase family protein n=2 Tax=Alteromonadales RepID=A1SRI6_PSYIN Length = 416 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 98/389 (25%), Positives = 177/389 (45%), Gaps = 9/389 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 L+ QI K +K L DG GL L + +G K+WQLR+ I+ K ++ G YP ++ Sbjct: 7 LSDTQIRLTKASDKVITLSDGGGLQLRIKPNGSKLWQLRFNKPIEKKPALMGFGAYPAIS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYA 113 L AR A + ++ GI+P + + N+F + W + K Sbjct: 67 LANARKLREAANELLAQGINPKAQRDSEIKEKELILNNTFEMVTAAWIKLKASEVKPDSL 126 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + ILP IG I +I +E +R E +G E +A + ++ RYA Sbjct: 127 KTISTTLTNHILPRIGKCPITEITAPMAIEALRPIEAKGNHEVIARACQYLNQIMRYATN 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G NP + + N P + +++P A+AT + ++ +T Sbjct: 187 LGMIHSNPLTGIKGVFMTKKITNNPHVKPEELPQLLMAIATANIKKITRNLILWQLHTMT 246 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E W +D+EN + I +K H +P++ Q + +L I+ S+++F Sbjct: 247 RPAETALAQWNEIDYENNLWIIPGERIKTGMTHQIPLTVQTLAILEACKVISGN-SDYIF 305 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + + + + K++GY+G ++ HG R T +++ + E L+H G Sbjct: 306 PADRNPNAHANKASANMAFKRMGYQGRQTAHGLRGLARTTLSDKGVAYEPSEACLSHKVG 365 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDE 382 SV YNH+ YL++R ++M WW+++++E Sbjct: 366 NSVSQSYNHSTYLNQRIKIMAWWSNYIEE 394 >UniRef50_A1WLK0 Phage integrase family protein n=4 Tax=Burkholderiales RepID=A1WLK0_VEREI Length = 421 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 134/403 (33%), Positives = 206/403 (51%), Gaps = 19/403 (4%) Query: 1 MLTVKQIEAAK-PKEK-PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT K + A P +K RL D GLYL V SG K W +Y+ DG+EK L +G YP + Sbjct: 1 MLTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYRFDGREKRLALGVYPDV 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGY 112 L++AR ARK G+DPV ++ +N +F + +E++ KK+ WS+ Y Sbjct: 61 PLKDARTARDDARKQHQRGVDPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLEY 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + DI P +G L ++ I LL+ +RR E RGA E + CG+ FRY I Sbjct: 121 ARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARGARELPHSLLEACGQTFRYGI 180 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TGR N A DL A++ K+ L ++ A+ + G + + +A + Sbjct: 181 ATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSALL 240 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQVVELLTTLSSI 284 R +R M W+ VD E + I + MK + H+VP++ Q V +L L + Sbjct: 241 FQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQPL 300 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL-ESGHGFRHEFSTIMNE-HEWPAD 342 T +VF K+P+ EN V + ++++G++ + HGFR T++ E +D Sbjct: 301 TG-RGRYVFPAVVSPKRPMSENTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSD 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 IEVQLAH G + Y+ A+++ +R+ MMQ WAD+LD E Sbjct: 360 VIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDALCE 402 >UniRef50_B8GNQ7 Phage integrase family protein n=6 Tax=Proteobacteria RepID=B8GNQ7_THISH Length = 422 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 126/392 (32%), Positives = 208/392 (53%), Gaps = 11/392 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +L+ +++E +++PY L DG L+LYV SG K+W+ RY++ GK I +GKYP ++L Sbjct: 5 LLSARKVETIPSQKEPYWLKDGGSLFLYVTPSGSKLWRYRYRLGGKPAIYAIGKYPQVSL 64 Query: 61 QEARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 + AR + AR+ + G+ PV K + N N+F + + W Q WS GYA Sbjct: 65 EAARTERDRARELVKKGVHPVVEKRVNISTQLEKNENTFEPVARRWMASNVQ-WSEGYAD 123 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ + ++D+ P +G L + I L VI+ +RGA A R+ C ++F YA Sbjct: 124 QVKRTLENDVFPKVGKLPVSSIRTAHLRPVIKDVAERGAPTVAILIRQLCSQIFAYAAGE 183 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 +P L ++K R ++ P LP +IP F + G V++IA +++ T +R Sbjct: 184 ELCDSDPTALLKRSVKRPRVRHHPPLPWQEIPKFLSRVDDA-GYRVTVIALRLMALTYVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T ELR W D ++ + T+ A MK R H+VP+S Q + LL L ++T + +F Sbjct: 243 TAELRKAHWSEFDLDSAMWTVPAGRMKMRDPHIVPLSKQAIVLLKELHTLTG-GGKVLFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA--N 352 G + + V++++GY G S HGFR +T++ +P + +++QLAH+ Sbjct: 302 GFRKPGTVMSATTLNKVLERMGYGGQFSSHGFRSTATTLLGLLSYPENRVDLQLAHSKRK 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 S R Y+H +Y+ R+ +MQ WAD LD Sbjct: 362 KDSSRAPYDHTKYIASRKIIMQDWADILDAMA 393 >UniRef50_C1TL52 Integrase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL52_9BACT Length = 378 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 145/386 (37%), Positives = 223/386 (57%), Gaps = 14/386 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I+ A P+EK Y + D GL+L + +GKK W++R+K G+E T+G+YP ++L+ Sbjct: 3 LTNVEIKRATPREKRYTMRDSEGLWLEITPAGKKTWKVRFKAQGREIKHTLGRYPDISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHK-KQVWSVGYATELAKMF 120 EAR K R ++ S +F A+ +EW+E + V + G+A + Sbjct: 63 EARLKRDEIRLELVN--------HKSVPEGTFKALAEEWFERQVVPVRTHGHARTIRSRL 114 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 D ILP +G DI+ +LL ++RR ED+G +E A++ + G+V RY I TG+A+++ Sbjct: 115 DRLILPYLGDKPPADIDAPELLAILRRIEDQGHVETAHRVSQIVGQVLRYGIATGQARHD 174 Query: 181 PAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 DL A+ + ++FP L +I +A+ FSGS+V A YTA+R E+R Sbjct: 175 ITADLKGALIPRKPEHFPTLTDPKKIGGLMRAIQAFSGSVVVRCAMLFQIYTAVRPGEMR 234 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 WK +D + + I A MK R+ H+VP+S Q + +L + +T E +F K Sbjct: 235 KAEWKEIDGD--LWKIPAERMKKRRPHLVPLSSQAIGVLEEIRPLTGG-GELIFPSVRSK 291 Query: 300 KKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRG 358 +PI + V ++++GY + +GHGFR FSTI NE +WP++ IE+QLAH + SVR Sbjct: 292 TRPISDMTVNAALRRMGYAQNELTGHGFRAMFSTIANECQWPSNVIELQLAHVDKNSVRA 351 Query: 359 IYNHAQYLDKRREMMQWWADWLDEKV 384 YNHA+ LDKRRE++QWW DWLD Sbjct: 352 AYNHAELLDKRRELLQWWGDWLDGVR 377 >UniRef50_Q0BEM8 Phage integrase family protein n=4 Tax=Burkholderia ambifaria RepID=Q0BEM8_BURCM Length = 414 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 125/389 (32%), Positives = 198/389 (50%), Gaps = 12/389 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AK KP +L DGNGLYL V SG K+W+ +Y+I GKE + +G+YP +LQ Sbjct: 3 LTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTSLQ 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR AR+ + G+ P A++ + +F A+ EW E K++ W+ + E Sbjct: 63 AARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHFGE 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +M + D P IG ++ I +L ++RR E RG+ A K R+ VF+YA++T Sbjct: 123 ILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYAVITL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA L A+ ++ L +++ A + L + + IA ++L RT Sbjct: 183 RADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTT-IAIRLLMMLFPRT 241 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA- 294 EL W+ +D + +K R++H+VP+ Q + LL L I ++ Sbjct: 242 VELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRG-YILPI 300 Query: 295 -GRNDKKKPICENAVLLVIKQI--GYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 N K+ + + + + +GH FR ST ++E W + +E+QL+H Sbjct: 301 LHSNRKRPHMSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSHK 360 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWL 380 + R YNHA+YL +RREMMQ WADWL Sbjct: 361 DKDRTRSTYNHAKYLPERREMMQSWADWL 389 >UniRef50_Q5P707 Phage-related integrase n=2 Tax=Proteobacteria RepID=Q5P707_AZOSE Length = 415 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 131/388 (33%), Positives = 201/388 (51%), Gaps = 8/388 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT + A K +K YR+ D +GL L V SG K W+ R+++ K+ + +G+YP M L Sbjct: 1 MLTDAKCRAVKATDKTYRVADSHGLCLEVRPSGAKFWRYRFRLADKQNMHALGEYPAMGL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGYAT 114 Q+AR AR+ + GI+P + +F + EW E + WS Y Sbjct: 61 QDARRARDEARELVRKGINPSHHRGLEKAERILALGSTFETVTAEWIERNRPDWSANYIR 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ D+ P IG I D++ +L ++R+ E R + +A + G VFR+A+V Sbjct: 121 QVRARMAGDVFPEIGQYPIADLKAAHVLAMLRKVEKR-SPTQAALVKTWVGGVFRFAVVE 179 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + +P L A+K + + L D+I AF +A+A G + A ++ TA R Sbjct: 180 QLREDDPTFPLRRAVKPTQVNHHAILRNDEIGAFLRAIAAAPGEVTVKEAVGLMWATACR 239 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E+ W +D + + TI MK ++ HVV ++ Q VE+L + T + E VF Sbjct: 240 INEVTGARWAGIDLDAGLWTIPPGRMKAKQEHVVTLTRQAVEILRRVQVHTGTL-EHVFP 298 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 R+D+K+P+ AV + ++ GY G + HG R FSTI N W AD IE+ LAH Sbjct: 299 HRSDRKRPMSGEAVRDLFRRAGYAGKFTPHGVRGTFSTIANGAGWRADVIELCLAHQERN 358 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDE 382 +R YNHAQ LD+RRE++QWW D D+ Sbjct: 359 QIRRAYNHAQLLDERRELLQWWGDLSDQ 386 >UniRef50_B7N6K6 Prophage CP4-57 integrase n=8 Tax=Enterobacteriaceae RepID=B7N6K6_ECOLU Length = 415 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 108/391 (27%), Positives = 182/391 (46%), Gaps = 12/391 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMT 59 LT +I AKP+ Y L DG GLYL V SG+K W Y K ++G YP++T Sbjct: 8 LTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVT 67 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQV--WSVG 111 L AR+ R+ + GIDP +K N + + ++W + KK+ S Sbjct: 68 LAMARETRTKYRRLLWQGIDPRQHLAGIAEEKRLQNECTLEKVAEQWLKEKKRTSDLSED 127 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 +A ++ + + + P +G + +I P L E + E++G +E + R E+FR+A Sbjct: 128 HAKDVWRSLEMHVFPSLGSTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFA 187 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 I ++NPA +L K +K+N P LP ++ AL S + + T Sbjct: 188 ISEELIEFNPADNLVARFKKPKKQNMPALPPSELGRLMLALQNASIRKETRCLIEWELLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R E S W ++D + I + MK + H VP+S Q + +L + +++ + Sbjct: 248 WVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHR-PW 306 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF + + + + ++G+ G HG R T H +P + +E LAH Sbjct: 307 VFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSIARTAGAGH-FPREVLESALAHQ 365 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + YN + YL++RR +MQWW +++D Sbjct: 366 KEDEIEAAYNRSDYLEQRRPLMQWWGNYVDA 396 >UniRef50_P76542 Putative prophage CPZ-55 integrase n=6 Tax=Enterobacteriaceae RepID=INTZ_ECOLI Length = 402 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 155/392 (39%), Positives = 236/392 (60%), Gaps = 14/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT K I+AA+P++KPY+L D GL+L V +G K W+ RY ++ +E + +G YPL+T Sbjct: 6 LTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLIT 65 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYA 113 L+EAR +A +R I+ GI+PV+ + F + ++W+ + WS YA Sbjct: 66 LKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESYA 125 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + D+ P++G I DI +L ++++ ++R A E+A K RRR GE+F++A++ Sbjct: 126 KQVRSALEKDVYPVLGKRSIVDITARDVLALLQK-KERTAPEQARKLRRRIGEIFKFAVI 184 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 T NP DL A+K R + ++P +IPAF KAL GS+ A ++L TAL Sbjct: 185 TELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALERA-GSVQIQTAIRLLILTAL 243 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 RT ELR W+ ++ E+ IT+ A VMK R+ HVVP+S Q VELL + + S FVF Sbjct: 244 RTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGY-SAFVF 302 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 GR KP+ +A+L +++IGY+ + +GHG+R FST +NE + D IE+QLAH Sbjct: 303 PGRFM-DKPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVP 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 G +RG+YN A YL +RR MMQ +AD +D + Sbjct: 362 KG-IRGVYNQAAYLKQRRAMMQDYADAIDSIL 392 >UniRef50_Q0P7K9 Bacteriophage integrase n=8 Tax=Enterobacteriaceae RepID=Q0P7K9_ECOLX Length = 423 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 124/405 (30%), Positives = 222/405 (54%), Gaps = 23/405 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +I + KP +KP+++ D +GLYL V G ++W L+Y+I+GKE + +G YP ++L Sbjct: 3 LNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS----NNNSFSAIYKEWYEHKKQVWSVGYATELA 117 +AR + RK +++ I+P + + A F ++ EW+ KK+ WS A + Sbjct: 63 DARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKK-WSQNTADRVL 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + P IG L + +++ +E+++ E++G +E A+++R+ + RYA+ G Sbjct: 122 ARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEVASRSRQHLSNIMRYAVHQGLI 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATF-SGSIVSLIATKVLRYTALRTK 236 + NPA +L ++++P LP +++P + + ++ G ++ +A + + +R+ Sbjct: 182 EINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLTLHVFIRSS 241 Query: 237 ELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSI 284 ELR W ++F NRI TI A+ K R H+VP+S+QV+ +L + I Sbjct: 242 ELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKEI 301 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEHE-WPA 341 + E VF G +D KP+ EN + ++Q+GY + GHGFR + + E W Sbjct: 302 SGGY-ELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ 360 Query: 342 DAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 DA+E Q++H +VR Y H A++++ R +MMQWW+D+LD E Sbjct: 361 DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSE 405 >UniRef50_A6QCY9 Site-specific recombinase, phage integrase family n=2 Tax=Proteobacteria RepID=A6QCY9_SULNB Length = 409 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 214/394 (54%), Gaps = 14/394 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K+I+AAKPKEK Y+L DG GLYL + G+K W+L+Y+ DGKEK +++G YP +LQ Sbjct: 8 LTDKEIKAAKPKEKEYKLFDGGGLYLSITPKGQKWWRLKYRFDGKEKRISLGVYPNTSLQ 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN---------NSFSAIYKEWYEHKKQVWSVGY 112 +AR + + I+ GIDP + +K N+F +I EW E ++ + Sbjct: 68 DARQQREDFKTQIAKGIDPSRERKEKKEAVKAEVFKSRNTFKSICLEWIELQRPQMAEAT 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + + D +G + DI L+ + + +DRGA+E A+++ C ++RYA+ Sbjct: 128 LSKYERTLEKDFYAPLGDKSMNDITRHDLITIAQVIQDRGAVETAHRSLGLCNRIWRYAL 187 Query: 173 VTGRAKYNPAPDL--ADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLR 229 + +N D+ D ++ Y+ K+F + + +I A+ ++G + A ++L Sbjct: 188 QFDKVGHNIVSDISKKDVLRSYKNKSFKTITDEVRIGELMNAIDNYTGEFTTKSALRLLP 247 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 T +R +R W D EN I TI A MK +K H +P++ Q V++L + T + Sbjct: 248 LTFVRPHNIRYAEWSEFDLENGIWTIPAEKMKMKKEHKLPLAPQAVKILKEIYPYT-NDA 306 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQL 348 ++VF + K I EN + + +K++ + G HGFR FST+ E + ++ IE L Sbjct: 307 KYVFHSPISRLKAISENTLNMALKRLDFGGEIVSHGFRAMFSTLAYESGKFRSEVIEDLL 366 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 AH V+ YN A Y ++RE+++W+AD+L+ Sbjct: 367 AHQEANQVKKAYNRAAYDAEKREIVEWYADYLEN 400 >UniRef50_C1M393 Bacteriophage integrase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M393_9ENTR Length = 420 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 126/404 (31%), Positives = 206/404 (50%), Gaps = 21/404 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L I+ A +EKPYRL D GLYL + SG ++W R++ +GK+ + G YP +T+ Sbjct: 3 LNDHIIQNAISQEKPYRLADSLGLYLVISNSGSRLWYFRFRFNGKQNRIAFGPYPQITIA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN----NSFSAIYKEWYEHKKQVWSVGYATELA 117 +AR K ARK ++ GI P + +K+ +F I W+ WS G+A ++ Sbjct: 63 DARRKRDAARKLLTSGISPSEHRKSEKAASSKTRTFQHIALAWHSSCLNRWSEGHANKIL 122 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + P +G +I IE L E+I+ ++G + A++ R+ ++ R+++ G Sbjct: 123 VCLQRYVFPYVGKKDIAKIETFHLAELIKEVNNKGVHDVASRIRQYLTKIMRHSVQQGLI 182 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 YNPA DL D + +++P LP + + + G + +A ++ + LR E Sbjct: 183 HYNPALDLEDIITPVVVQHYPALPLRSLSELLIKIDDYKGQELIRLALELSLHVFLRASE 242 Query: 238 LRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSSIT 285 LR W + + I TI A K ++ H+VP+SDQ +++L + I+ Sbjct: 243 LRFARWDEFNMKIHIWTIPAKRKAVDGVRFSDRGSKMKEEHLVPLSDQAMKILERIKKIS 302 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEHE-WPAD 342 SEFVF + +P+ EN + ++ IGY + HGFR + +NE W D Sbjct: 303 GE-SEFVFHSIRNLNRPMSENTINKALRVIGYCTKNDVCAHGFRTMACSALNESGKWSKD 361 Query: 343 AIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEKVE 385 AIE Q++H + +VR Y H A+YL++R EMMQWW+D+L E Sbjct: 362 AIERQMSHKDRNNVRAAYLHKAEYLEERFEMMQWWSDYLSTTRE 405 >UniRef50_A5EXV7 Integrase A2 n=6 Tax=Cardiobacteriaceae RepID=A5EXV7_DICNV Length = 401 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 138/395 (34%), Positives = 212/395 (53%), Gaps = 20/395 (5%) Query: 2 LTVKQIEAAKPKEKPY-RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT K I+ AK + Y RL DG+GL L + G W RY I+G+E+ +++G+YP M++ Sbjct: 12 LTDKIIQTAKKPSRGYLRLTDGDGLSLKITDRGSYFWNFRYYINGRERNMSLGRYPAMSI 71 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASS---------NNNSFSAIYKEWYEHKKQVWS-V 110 + AR +A R + G+DP+ +K +F + +EWY+ K+ W Sbjct: 72 EAARGEALELRYHLRQGLDPLAERKKKQAAYLAEEKTQKETFEFVAREWYQLKRPEWKNE 131 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 +A ++ + + P IG I I P +LL+V+ + DR E A++ ++R VF Y Sbjct: 132 KHAQQVITTLEQFVFPFIGKKPISRISPPELLKVMEKLYDR--PETASRVKQRIRAVFDY 189 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 AI T R NPA L + K P LPA ++ F K L T+ G+ + +A ++L Sbjct: 190 AIQTDRLSRNPAIALPKIFRSTIAK-QPSLPARELGIFFKQLDTY-GNPKTALALRLLIL 247 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T R+ ELR W+ + I A MK + H+VP+SD +E+L L S+ + S Sbjct: 248 TMTRSGELRFGQWQE--LQGNEWHIPAERMKMNRPHIVPLSDWALEILDELRSLRRNNSP 305 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLA 349 + G ++ P+ + + L +K++GY G HGFR ST MNE W DAIE QLA Sbjct: 306 YFVTG--NRNTPLSDTTLSLAMKRLGYAGRAVPHGFRATASTAMNESGLWNPDAIERQLA 363 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H + +VR YN A+YL++R MMQWWAD++ +K+ Sbjct: 364 HTDENAVRAAYNRAEYLEERHRMMQWWADYIRKKI 398 >UniRef50_B7I7W7 Integrase n=4 Tax=Pseudomonadales RepID=B7I7W7_ACIB5 Length = 427 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 128/392 (32%), Positives = 201/392 (51%), Gaps = 11/392 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKI-DGKEKILTVGKYPLMTL 60 L+ + +P+ K YR LDG GLY V GKK W RYK DGK L +G YP ++ Sbjct: 29 LSDTVLANLEPESKEYRELDGEGLYFRVKPDGKKAWLFRYKKADGKWSWLGIGTYPELSG 88 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGYAT 114 AR KA KDIS G +P+ K+ +F + +EW + K W T Sbjct: 89 AGARKKAREIIKDISQGDNPIITKQERKRQELEQNNATFEVLAREWLDTKANTWVKDTMT 148 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFED-RGAMERANKARRRCGEVFRYAIV 173 + I I G I+P++ + ++ + +G E+ N+ R C +++ +A V Sbjct: 149 RNKGALEKHIFAIFGKRLYTSIKPIEWMNHLKGIQQHQGIYEQVNRVRAMCRDIYDFAKV 208 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 TGR YNP L ++ K+N + ++PA +A+ ++ ++ + ++L Sbjct: 209 TGRIDYNPLEGLQKFLQQGVKQNMSHVSEQELPALLRAINSYP-TMDVRMGLQLLAMLFC 267 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R ELR W+ D I I A MK R+ HVVP+ Q + +L L + + SE++F Sbjct: 268 RPTELREAKWQEFDLNQGIWNIPAERMKKRREHVVPLPRQAITILNELKTY-ETNSEYLF 326 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 R+DK KP + ++ ++++GYEG ++ HGFRH ST++N + IE LAH Sbjct: 327 PSRSDKSKPKSDTVFIMALRRMGYEGRQTPHGFRHIASTLLNNRGFDERHIEAALAHV-K 385 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 V G+YN AQYLD R+ M+QW+A+ L+E + Sbjct: 386 DGVAGVYNKAQYLDDRKIMLQWYANHLEEIAD 417 >UniRef50_Q5E028 Phage family integrase n=2 Tax=Vibrionaceae RepID=Q5E028_VIBF1 Length = 399 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 100/391 (25%), Positives = 188/391 (48%), Gaps = 11/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT ++I++A P K + L DG GL L V +G K WQ ++ + K + + +G YP ++ Sbjct: 8 LTDRKIKSAAPTGKEFTLSDGEGLQLRVRPTGAKSWQFKFSDPVTRKIQKIALGPYPELS 67 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 L AR K R ++ I+P + + ++F + ++W+E KK+ S ++ Sbjct: 68 LANARSKTTEYRTLLAQKINPKSFEQSKELEAKRVQTSTFIVVAEQWFERKKETVSPAHS 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + I P + + + I ++ ++V+R E G + + ++ Y++ Sbjct: 128 YREWRTLEKYIFPHMSKIPVATITAVETIDVLRPLEKEGKYSTVKRICQSLNQIMDYSVN 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALAT-FSGSIVSLIATKVLRYTA 232 G NP + + + P + +Q+P F K L + + + + +T Sbjct: 188 HGLIHANPLAKIIKVFRKNTVLHMPTIRPEQLPDFLKRLHSCSTIQTKTKLLILWQLHTM 247 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R KE + W ++D E + TI A MK RK H +P++ Q + +L + + ++V Sbjct: 248 TRPKEAATTRWIDIDLEKGVWTIPAENMKRRKEHRIPLTSQAINILNQIR-LQSKRCDYV 306 Query: 293 FAGRNDKKKPICENAVLLVIKQ-IGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 F G D + IK+ +G + HG R ST ++E+ + + IE L+HA Sbjct: 307 FPGERDINSHVSLFTANAAIKRSLGLKDELVAHGLRAIASTALHEYGFDSLLIEACLSHA 366 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + VR YN + YL++R+E+M WW++++DE Sbjct: 367 DQNEVRASYNRSDYLEQRKEIMCWWSNYIDE 397 >UniRef50_A5EQ25 P4-like integrase n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EQ25_BRASB Length = 407 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 140/394 (35%), Positives = 214/394 (54%), Gaps = 13/394 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + AK + K +L DG GL+L + G K W+L Y+ GK++ L +G YP + L Sbjct: 3 LTDTKCRNAKGQIKSRKLSDGGGLHLLITPDGAKYWRLAYRWHGKQRTLALGVYPAVGLI 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 EAR A++ I+ IDP K+ N+F A+ +EW+E+ K S YA + Sbjct: 63 EARASRDDAKRSIAADIDPSIVKRERKRAAKIATGNTFEAVAREWHENWKDARSPYYAAQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + D P IG I +EP +LL+++R+ E RG E A + ++ G++FR+AIVTG Sbjct: 123 ILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLVGQIFRFAIVTG 182 Query: 176 RAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RAK +P+ DL DA++ + +P ++P F + L ++SG + +A K++ T LR Sbjct: 183 RAKRDPSVDLKDALRATGEPQRHRAMPLSELPTFLQKLESYSGEQQTKLALKLVTLTFLR 242 Query: 235 TKELRSMLWKN---VDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 T ELR+ W +D + + I A MK R H+VP+S Q V L L +++ S Sbjct: 243 TTELRAGKWNELENLDENSALWRIPAERMKMRLEHLVPLSRQAVAALRELRTLSG-GSPN 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAH 350 +F K + N +L + ++GY G + HGFR STI+NE + D IE QL+H Sbjct: 302 IFPSP-GKGDCMSSNTMLYALYRMGYHGRATTHGFRAVASTILNETNLFNRDWIERQLSH 360 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 VR YN A+++ RR MMQWWAD + Sbjct: 361 VERNEVRRAYNAAEWMPDRRRMMQWWADHITALA 394 >UniRef50_Q2N8A1 Symbiosis island integrase n=12 Tax=Bacteria RepID=Q2N8A1_ERYLH Length = 409 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 132/398 (33%), Positives = 213/398 (53%), Gaps = 15/398 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +LT I AK K Y+L D +GL+L V +G K+W+++Y+IDG+EK L +G+YP + L Sbjct: 2 VLTDVGIRKAKAGPKAYKLSDSSGLFLLVERTGGKLWRMKYRIDGREKKLAIGRYPEIGL 61 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKK----QVWSV 110 EAR + AR+ ++ G DP + K+ N+F+++ E+ E +K + W+ Sbjct: 62 AEARRRRDAAREQLAQGKDPSREKQRQKARAKLGAENNFASLAAEFCEKRKHDGSRAWAP 121 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 A + + IG L I DIEP +L +RR E +G +E A + + G VFRY Sbjct: 122 ATAKRCEYLLS-VLNSSIGHLPIADIEPADILTAVRRIESKGKLESAKRTLQLAGSVFRY 180 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 A+ T R K +P DL A+ ++ L +A+ + G ++ +A ++ Sbjct: 181 AVATARLKSDPTRDLRGALMNPTVTHYGAVLDPAGAGELLRAIDGYEGQPITKLAMQLAP 240 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 + +R ELR W +DF+ + TI AS K RK H+VP+S Q + +L +T P Sbjct: 241 HVFVRPGELRHAEWSEIDFDEALWTIPASKTKMRKDHLVPLSRQAIAILEMAHRLTGPDG 300 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPADAIEVQ 347 +VF +K+P+ +N + ++++GY + HGFR ST++NE W DAIE Sbjct: 301 -YVFPSVRTRKRPMSDNTINAGLRRLGYATDEMTAHGFRAMASTLLNESGKWNPDAIEGA 359 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 LAH + VR Y+ + +R +MM+WW+D+LD+ E Sbjct: 360 LAHGDSDKVRAAYHRGAHWKERVKMMKWWSDYLDQLRE 397 >UniRef50_A7ZQ61 Phage integrase family protein n=32 Tax=Gammaproteobacteria RepID=A7ZQ61_ECO24 Length = 436 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 114/396 (28%), Positives = 186/396 (46%), Gaps = 15/396 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPV---SGKKVWQLRY--KIDGKEKILTVGKYP 56 LT +I++ KP EK L DG+GL L + GKK W RY + K +++G YP Sbjct: 35 LTDTEIKSTKPAEKEVNLFDGDGLLLRIAPLAKGGKKNWYFRYAVPVTKKRTKVSLGTYP 94 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQV--W 108 +TL +AR ++ GIDP +N ++F A+ K+W + K + Sbjct: 95 HLTLAKARALRDEYLSLLTNGIDPQVHNNQKANALKDATEHTFQAVAKKWLDEKVKTSGI 154 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 S +A ++ + + +I +G I++I P L + + E RG +E + R E+F Sbjct: 155 SQDHANDIWRSLERNIFSTLGDTPIKEIRPKMLKQHLEPIEKRGVLETLRRIISRLNEIF 214 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 RYA ++NPA +L +K+N P LP ++P F AL S + + + + Sbjct: 215 RYAATEELIEFNPADNLGQRFSKPKKQNMPALPPSELPRFLVALNNASIRLETRLLIEWQ 274 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 T +R E W ++D E + I A MK +K H VP+S + + +L + I+ Sbjct: 275 LLTWVRPGEAVRTRWSDIDIETGMWNIPAEFMKMKKPHKVPLSKEALRVLDLMKVISGHR 334 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQ 347 E+VF + E I ++G+ G HG R T E + D +E Sbjct: 335 -EWVFPSIKAPLNHMHEQTANAAIIRMGFGGELVAHGMRSIARTAAEESGKFRTDVLEAA 393 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 LAH+ + YN A+YL +R +MQWW+D++ + Sbjct: 394 LAHSKKDEIIAAYNRAEYLTERVVLMQWWSDYVSSQ 429 >UniRef50_B5F474 Integrase n=26 Tax=Proteobacteria RepID=B5F474_SALA4 Length = 449 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 132/403 (32%), Positives = 210/403 (52%), Gaps = 24/403 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKI--DGKEKILTVGKYPLMT 59 L +QIE AKPKEK Y++ DG GLYL V G K W+++Y+ D KE L G YP +T Sbjct: 32 LNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPTIT 91 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN----SFSAIYKEWYEHKKQVWSVGYATE 115 L EAR K A+K +S GIDP +K + F I ++W+ WS ++ Sbjct: 92 LAEARAKRDAAKKLLSQGIDPKVEQKGAQAEIEGAYLFETIARQWHASNL-TWSEDHSHR 150 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + I P IG ++ + + QLL I+ + G + A + +R + R+ + Sbjct: 151 VLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVNAIMRFGVQND 210 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NPA D+A A+ + + P LP +IP F + L+ + G +++ +A ++ T +R+ Sbjct: 211 LLESNPASDMAGALLSVKATHHPALPPKRIPEFLERLSRYKGRLMTRLAVELTLLTFIRS 270 Query: 236 KELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTLSS 283 E+R W V+FE TI MK + H+VP+S Q ++ L + Sbjct: 271 SEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKRLHA 330 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMNEHE-WP 340 ++ E +F +D KK + EN V ++ +GY + GHGFR ++E + W Sbjct: 331 LSG-KGEVIFPSDHDPKKVMSENTVNSALRVMGYDTKTEVCGHGFRTMARGALSESKLWN 389 Query: 341 ADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDE 382 DAIE QL+H +V+G Y H ++YL++RR M+QWWAD++D Sbjct: 390 DDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDA 432 >UniRef50_A9IRV8 Int3 protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRV8_BORPD Length = 402 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 109/392 (27%), Positives = 191/392 (48%), Gaps = 15/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + ++ A+PK+ PY+L DG GL+L V +G ++W+ ++++ GKE++ +G+YP + L Sbjct: 10 LSDRAVKNARPKDAPYKLADGGGLHLLVQPNGSRLWRYKFRLGGKEQVFAIGRYPDVGLA 69 Query: 62 EARDKAWTARKDISVGIDPVKAKK----------ASSNNNSFSAIYKEWYEHKKQVWSVG 111 EAR++ AR+ ++ G+ P ++ A + +F A+ W + + Sbjct: 70 EARERHLAARRLVADGVSPTAQRRDDRARMAEDAARAKAGTFKAVLDSWKATPARALAPA 129 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + + D + P +G + +I +L ++++ E A R +F +A Sbjct: 130 TIRQRDREIDRYLEPKLGARPVGEITRRELADLLKTV-ATDTPEVARNLRTHMNSIFEHA 188 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + G NP P A+ ++ + P + D++ A ++ + + A ++L T Sbjct: 189 VDVGLIAGNPTPG-PRALPARKQTSHPAVAMDELGALLASIDASACQPATKAAFRLLLLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 A R E+ S W +D + I A MK R H VP+S Q VELL + + + ++ Sbjct: 248 ACRKLEITSGRWDEIDLDAGEWLIPADRMKTRTAHWVPLSRQAVELLRAVRAHSG--GDY 305 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAH 350 VF R+ P+ A+ +++++GY + HG R FST N D IE LAH Sbjct: 306 VFPHRDKPNTPMSPTALNEMLRRVGYRREMTVHGTRSIFSTWANAQPGANVDVIERCLAH 365 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 A VR YN Y D+RR ++Q WAD LD Sbjct: 366 APRDKVRAAYNRHAYKDERRALLQSWADVLDA 397 >UniRef50_A1WW57 Phage integrase family protein n=4 Tax=Proteobacteria RepID=A1WW57_HALHL Length = 412 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 117/396 (29%), Positives = 193/396 (48%), Gaps = 15/396 (3%) Query: 2 LTVKQIEAAKPKEKPY--RLLDGNGLYLYVPVSGKKVWQLRYKID-GKEKILTVGKYPLM 58 LT +Q AKP E +L DG GL L V +G K WQ RY+ G+E + +G YP + Sbjct: 8 LTDRQCRTAKPPEGKQQLKLTDGGGLVLLVKSNGGKQWQFRYRRPSGREATMGLGVYPDV 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEH-KKQVWSVG 111 L +AR++ AR ++ GIDP+ +KA + +SF A+ +EW++ + Sbjct: 68 PLSKARERRDEARALLADGIDPIDQRKAQRSAAASADTHSFEAVAREWWDAVHRHKVVAS 127 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 +A + + P +G + IEP +LE +RR E +E A++ + G+V RYA Sbjct: 128 HANRNLRRLEQYAFPKLGRRPVSAIEPPDVLEALRRIEALEHVETAHRVKTLIGQVCRYA 187 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRY 230 I TGR +P DL ++ + ++ P + ++ +A+ + G + A ++ Sbjct: 188 IATGRGSRDPTADLRGMLRSPKTRHLPAITEPAELGPLLRAIDGYRGQPTTRAALQLAPI 247 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 R ELR+ W+ D + S K V P+ Q + +L L I++ S Sbjct: 248 VFCRPGELRAAEWQAFDLSSGTWDYQPS--KDGDPLVTPLPRQAISILRELEPISR-SSR 304 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLA 349 ++F +PI +N + +K++ Y G HGFR TI+ E W + +E+QL Sbjct: 305 YLFPSGRTPDRPISDNTLTAALKRLDYGGRMVAHGFRAAARTILVERLGWGIEIVEMQLG 364 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 H + YN Q++++R M+Q WAD+LDE E Sbjct: 365 HRVRDAHGRAYNRTQWIEQRGVMLQQWADYLDELRE 400 >UniRef50_A6VC70 Integrase n=11 Tax=Proteobacteria RepID=A6VC70_PSEA7 Length = 395 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 199/387 (51%), Gaps = 9/387 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT AAKPKE+ YRL D GLYL V +G K W+ R+K+ GK +G YP ++L Sbjct: 1 MLTDAHCRAAKPKEQLYRLNDFRGLYLEVKPNGVKAWRYRFKLAGKGSWFALGDYPSVSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYAT 114 +ARDK ARK + GI+PV+ ++ + N+F A+ KEW + W Sbjct: 61 ADARDKCEEARKLVKQGINPVQNRQVERIKREQDSANTFEAVAKEWLA--LKDWEEVTKR 118 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 M + P IG + ++ I P +L+++ + RGA A +A+R +F A+ T Sbjct: 119 RRLDMLQRVVFPSIGKMPVRQITPAHVLDILSKTAKRGAPTVAAEAKRTMSGIFELAVAT 178 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA +P + A+ + ++ L QI +++ +T R Sbjct: 179 LRADNDPVWPVRKALPANKTQHKTALTTAQIGKLLTDFDNHRCGYQVNFCIQLMWWTLAR 238 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E W D + + +I A MK R+ H+VP+ Q VE+L L +I+ +F Sbjct: 239 PGEAAEAEWAEFDLDKALWSIPARRMKARREHLVPLPRQAVEMLRRLHAISGDR-MHLFP 297 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 GR+D+ KP+ +++ +K +G+ G S HG R ST +NE + DAIE QLAHA Sbjct: 298 GRDDRNKPMSAHSIRQALKALGWSGTYSPHGTRTTGSTRLNEMGYRPDAIEAQLAHAEPN 357 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 SVR YNHA YLD+RREMMQ WAD L+ Sbjct: 358 SVRRTYNHATYLDERREMMQAWADKLE 384 >UniRef50_A6F4S5 Putative integrase n=1 Tax=Marinobacter algicola DG893 RepID=A6F4S5_9ALTE Length = 437 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 139/395 (35%), Positives = 203/395 (51%), Gaps = 13/395 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 M+T + AK K+ YRL D GL L + SG K W+ RY++ GK + TVG+YP +T+ Sbjct: 1 MITDTKARKAKAKDTTYRLADSGGLALEIRPSGSKFWRYRYRLHGKAGMYTVGEYPTITI 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR A+K ++ G P + KK N+ + KEW K WSV Y Sbjct: 61 SEARAIRDWAKKCVANGEAPAEVKKRELAERRAEQANTLEEVGKEWIARNKAGWSVYYHR 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ +M + DI P +G I+DI P Q+L ++R E+R A A ++ ++R+AI T Sbjct: 121 QVTRMLEADIWPNLGKKGIRDITPAQMLAELQRVEER-APTVAVNLKQWLAAIYRHAIAT 179 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSG---SIVSLIATKVLRYT 231 RA +P L A+K + K+ P D+ +A+ G ++ IA ++L T Sbjct: 180 LRADNDPTAPLRGAIKKPKAKHKPSYNLDEFGKLCRAIWPKEGAIAYRITEIAIRLLALT 239 Query: 232 ALRTKELRSMLWKNVDFE--NRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 RT E+RS W D E TI MK H+VP+S Q VELL L +T Sbjct: 240 MARTVEVRSARWDQFDLESEEPTWTIPGEKMKRGVTHLVPLSSQAVELLRELEGLTGNR- 298 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 + F +P+ + V++++GY GL SGH FR ST++N + + D +E QLA Sbjct: 299 PYCFPNLRQPTEPMSATTINRVLERLGYGGLFSGHAFRTTASTLLNNYGFDGDWVERQLA 358 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H R YNHA+YL +RR M+QWWAD +D Sbjct: 359 HTEENKSRASYNHAEYLYQRRIMLQWWADLVDTLR 393 >UniRef50_Q4QL03 Prophage CP4-57-like integrase n=11 Tax=Haemophilus RepID=Q4QL03_HAEI8 Length = 419 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 120/398 (30%), Positives = 203/398 (51%), Gaps = 17/398 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L++ +I AKPKEK Y L DG GL+L V ++G K+W+ +Y I K ++++G YP ++ Sbjct: 12 LSITEINNAKPKEKDYSLSDGQGLFLLVKMNGSKIWRFQYYKPISKKRTLISLGVYPEIS 71 Query: 60 LQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHKKQVW----- 108 L++AR+ R ++ IDP + K + S + KEW KK Sbjct: 72 LKDAREIRDLYRSLLAKNIDPQDYRLQQEQKAIQERQFTLSEMGKEWLYLKKNEVDTGRL 131 Query: 109 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 ++ K + + ++G I +I +E ++ E G ++ ++ ++ Sbjct: 132 KEVTFIDIGKRLERHLFKVLGHYSISEISAPLAIEKLKPLERAGKLDTLHRIIGYLNQIM 191 Query: 169 RYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 Y++ G YN D+ +N P + +Q+P + L + I + A ++L Sbjct: 192 IYSVNRGVINYNATADIGRVFIRPIAENNPTIRPEQLPKLFEDLQNSTLEIETRCALELL 251 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK----IHVVPMSDQVVELLTTLSSI 284 TA R + + W+NVDFEN ++ I MKGR+ ++P+S Q V +L L + Sbjct: 252 LLTAGRAGAITQLEWENVDFENSLLNIPKEKMKGRQGKVQDFILPLSKQAVTILRLLQKL 311 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI 344 + S+FVF + + ++PI + + +IGY + + HG R FST MNE E+ ++ I Sbjct: 312 NRCNSKFVFPSKKNPRQPISKETPNKALGRIGYRNILTAHGLRSVFSTAMNEAEFNSEII 371 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 EV LAH SVRG YN A+Y+ +R E MQWW ++++E Sbjct: 372 EVCLAHFEYSSVRGTYNKAKYMPQRIEYMQWWGNFVEE 409 >UniRef50_B1Y3M2 Integrase family protein n=4 Tax=Proteobacteria RepID=B1Y3M2_LEPCP Length = 433 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 126/417 (30%), Positives = 200/417 (47%), Gaps = 35/417 (8%) Query: 2 LTVKQIEAA-----KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYP 56 L K I AA K + RL DG+GL L V +G W+ RY+ GKE +L++G YP Sbjct: 7 LDDKSIRAAIKRAMKAQAGE-RLTDGDGLRLDVQPTGSAWWRWRYRFGGKEGMLSLGTYP 65 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSNNN------------------SFSAIYK 98 +L AR + AR+ ++ GI+P +A+K +F + Sbjct: 66 DTSLSAARGRRDEARERLAAGINPSEARKDDKAAQALKAEAARLAAAGLPGPGTFEHAAR 125 Query: 99 EWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERAN 158 EW+ WS G+A ++ + +D+ P IG + ++ P +LL+ RR E RGA+E A Sbjct: 126 EWHARMAPSWSEGHAGKVLALLVNDLFPFIGTSALAELTPPELLKHARRIEARGAVETAY 185 Query: 159 KARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSG 217 +A + G VFR+ + G +P DL A+ ++ + ++ +A+ + G Sbjct: 186 RALKAAGAVFRHGVQNGYCDSDPTRDLKGAIVLPVPEHRAAITDPARLGELLRAIDGYQG 245 Query: 218 SIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPM 270 + V A + LR ELR W D + + TI A+ MK HVVP+ Sbjct: 246 TPVVRSALALAPLVFLRPGELRKAEWAEFDLDAAVWTIPAARMKGRLKAKLNGPDHVVPL 305 Query: 271 SDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHE 329 + Q +L L +T ++VF +P+ +N VL ++++G+ + +GHGFR Sbjct: 306 APQAAAILRDLQPLTGA-GKYVFPNPLTPDRPLSDNGVLSALRRMGFDKDEMTGHGFRAT 364 Query: 330 FSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 TI E + +E QLAH ++ YN QYLD+RR+MM WAD+LD + Sbjct: 365 ARTIAAERLKIDPVVLEAQLAHVVADALGRAYNRTQYLDQRRDMMTRWADYLDRLRK 421 >UniRef50_C7HXY0 Integrase family protein n=1 Tax=Thiomonas intermedia K12 RepID=C7HXY0_THIIN Length = 392 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 131/390 (33%), Positives = 201/390 (51%), Gaps = 14/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LTVK ++AAKP+E+PY+L DG GLYL+V +G K W+ Y+++GK++ T G+YP MTL Sbjct: 3 LTVKAVDAAKPQERPYKLTDGGGLYLFVAPTGLKSWRANYELNGKQRTRTYGRYPAMTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKK---ASSNNNSFSAIYKEWYEHKKQVWSV-GYATELA 117 +AR+ A+ P +A + +F AI ++W + K S + ++A Sbjct: 63 QAREAHTQAKS------TPAEAATVTPIAKVAPTFKAITEQWLKIKLPSLSNGKHQGQVA 116 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + P IG L I I +L+EV++ + G +E A++ R VF YA G Sbjct: 117 GTLERFAYPAIGKLPIDQIPRTKLVEVVQAVQKGGRVETAHRVAGRIAAVFDYAQDVGYI 176 Query: 178 KYNPAPDLADAMKGYRKKN-FPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 + + A L ++ + K +P + A A+ + V+ + ++L T +R Sbjct: 177 ESHGAAGLVRVLQPRKVKKPMASIPPGEAGALLAAIDGYE-EPVTRLGLQLLALTFVRVG 235 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+R M W + + + + A MK HVVP+S Q +L L +T + V Sbjct: 236 EMRGMRWSELREDGTVWVVPADRMKAGLPHVVPLSQQARAVLEQLRVLTGDRN-LVLDSP 294 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGS 355 + EN L + ++GY G + HGFR ST++NE + D IE QLAH + Sbjct: 295 LRPGHALSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHRETDT 354 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 VR YN AQYLD+RR +MQWWADWLD + E Sbjct: 355 VRAAYNRAQYLDQRRGLMQWWADWLDRQRE 384 >UniRef50_B3GXJ8 Prophage CP4-57 integrase n=4 Tax=Pasteurellaceae RepID=B3GXJ8_ACTP7 Length = 406 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 102/393 (25%), Positives = 181/393 (46%), Gaps = 13/393 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L ++E AK K Y L DG GLYL V S K W Y+ I + LT+G YP ++ Sbjct: 8 LNNTEVEKAKIKPAEYSLSDGYGLYLRVKPSKVKTWIFNYQEPITKRRTNLTIGDYPAIS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYA 113 + EAR R ++ GIDP K+ N+N+F + + W E + + Sbjct: 68 IAEARTIREEYRALLAKGIDPKTNKEEQERQQAEQNDNTFLKLAQLWKEKRSKEVEPLTM 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + ++ + P++G I I P L++ ++ D+G + ++ ++ Y + Sbjct: 128 AKNWARLENHLFPVLGHYAIDKITPPILIKAVKPLNDKGINDTLHRILNLANQILNYGVT 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G +N +++DA + + P + ++P + ++ + K + + Sbjct: 188 VGVLPFNACQNVSDAYHKETQTHHPAIKPSELPKLIADFQNSNRDFLTKVLFKWQLLSMV 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRK----IHVVPMSDQVVELLTTLSSITKPVS 289 R E S+ W +DF+ + I A MK + H VP+S Q++++L +L IT V+ Sbjct: 248 RPAEAVSIEWAEIDFDKNLWFIPAEKMKKTRKGQFPHTVPLSSQMLKILESLRPITG-VN 306 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 +FVF + K + + + +++IGY G++ HG R T + + A E LA Sbjct: 307 KFVFPHYSQPNKSMSKETITNALRKIGYRGIQDSHGLRSIARTYLEDQAVDFRAAESCLA 366 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 H G YN A+Y++ RR +MQ W D+ + Sbjct: 367 HRIGNETSQAYNRAEYIELRRPLMQLWGDYCES 399 >UniRef50_D0KY10 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY10_HALNC Length = 427 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 131/415 (31%), Positives = 207/415 (49%), Gaps = 34/415 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+A KP+ KPY++ D GLYL+V +G K+W+L Y+ +GK K L +G YP + L+ Sbjct: 3 LTDTAIKALKPESKPYKVTDEKGLYLFVTPAGGKLWRLDYRFEGKRKTLALGGYPDVNLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNS-------------------------FSAI 96 +AR AR+ I+ G DP + +KA + F I Sbjct: 63 QARVYRDEARQLIANGTDPAELRKAEKTTITESRREEAEAVKIEAMIQAGEALPGSFEEI 122 Query: 97 YKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMER 156 EW S Y ++ ++ P +G + D+ +L+V++R E RG +E Sbjct: 123 GDEWVNMYLADKSEKYRNKVINRLKAEVYPYLGRAPVADVTAPMVLKVLQRIEARGIIES 182 Query: 157 ANKARRRCGEVFRYAIVTGRAK-YNPAPDLADAM--KGYRKKNFPFLPADQIPAFNKALA 213 A++ ++ G++ RYAI TGR + ++ L A+ K + I + +A Sbjct: 183 AHRVKQNIGQILRYAIATGRRELFDVTMALNKAIAPMPKDKNHAAPTEPKDIAPLLRIMA 242 Query: 214 TFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQ 273 + GS ++ A + +R ELR M W ++DFE AS K + H+VP++ Q Sbjct: 243 GYRGSPITRAALTIAPCVFVRIGELRHMQWADIDFETFEWRYTAS--KTGQEHIVPLARQ 300 Query: 274 VVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE--GLESGHGFRHEFS 331 VV L L +T S +VF G +P+ EN V +K++G + +GHGFR Sbjct: 301 VVAALIELQPLTGH-SRYVFTGARSDTRPMSENTVNGALKRLGIDTQTELTGHGFRAMAR 359 Query: 332 TIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 T++ E H + + IE+QLAHA + YN ++L+ RR+MMQ WAD+LDE + Sbjct: 360 TVLEEVHNFRPEVIELQLAHAVRDPLGRAYNRTKHLETRRKMMQVWADYLDELRD 414 >UniRef50_A6SWC6 Prophage integrase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SWC6_JANMA Length = 414 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 133/399 (33%), Positives = 209/399 (52%), Gaps = 19/399 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEK--ILTVGKYPLMT 59 LT +I+AAKPKEKPY+L DG G+YL + SG KVW++ Y+ + + LT G YP + Sbjct: 8 LTDLRIKAAKPKEKPYQLADGEGMYLEILPSGSKVWRMAYRQENRTTSTRLTFGHYPAVG 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGYA 113 L EAR K +K I G+DP +A++ N+F A+ + W+++K + W A Sbjct: 68 LAEARRKRADTKKQIVEGVDPAQARRVEKAISATAAANTFEAVARMWHQNKLEQWQPRTA 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + + D+ P+IG I +++ +L+V+R+ E RGA E A + + C ++FRYAI Sbjct: 128 NNILRRLEQDVFPLIGKRPIAEVKAPVMLDVLRQIEKRGAAEIARRNAQVCSQIFRYAIA 187 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL--ATFSGSIVSLIATKVLRYT 231 G A+ +P P L A+K K + ++P F + L V+ I +++ T Sbjct: 188 CGIAENDPVPALRGALKPRIKGVHAAILVAELPEFLETLNHNKARMFPVTRILMQLMMLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRK--------IHVVPMSDQVVELLTTLSS 283 +RT EL W VD +N I MK K H V + Q L L + Sbjct: 248 FVRTSELTETPWSEVDLKNEQWVIPWQRMKMGKRKINPRKVDHHVFLPKQGWAFLRELRT 307 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADA 343 T ++++F + D KKPI A+L +K++GY G +GHGFR I+ Sbjct: 308 YTGG-NQWLFPNQRDPKKPISNGAILAALKRLGYAGKHTGHGFRSLAKGILKTLGNDISN 366 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 IE QLAH++G + Y+ +L++R+ MMQ +AD++D Sbjct: 367 IERQLAHSSGEAYGASYDRESFLEERKIMMQGYADYIDA 405 >UniRef50_UPI0001AF6377 prophage PSPPH01, site-specific recombinase phage integrase family protein n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF6377 Length = 393 Score = 389 bits (1000), Expect = e-107, Method: Composition-based stats. Identities = 113/390 (28%), Positives = 195/390 (50%), Gaps = 10/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP P +L D GL+L V G K+W+ R+++ GKE +G YP ++L Sbjct: 3 LTAVKIRHAKPGPAPIKLTDSGGLFLEVTPGGNKLWRYRFRLAGKENTYAIGSYPDLSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + AR+ + +G +P ++ N+F + +EW E + ++ Y + Sbjct: 63 DARAERDAARELVKLGRNPAHVRQTVKAQQLSENSNTFKVVAEEWIEKRLANRTLKYRDQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F +D+ P IG +++I Q+L +I + + R A A R+ VF Y +VT Sbjct: 123 IRRAFVNDVYPKIGRFPLREITAAQILVIITQMDKRDATTLALMVRQWISSVFCYGVVTL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA + A+ + + +++ + A+ + G ++IA +L +RT Sbjct: 183 RADSDPAAAVRGAISRKDVNHSRPMNLEELAEYFLAVGKYGGHRGTVIALYLLPLLFVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + I I + MK ++ H+VP+ ++ + LL L S+T +F G Sbjct: 243 VELRLAEWSEFDLDKAIWIIPSGRMKRKRPHMVPLPERAIALLRELRSLTAGN--LLFPG 300 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGG 354 +PI + ++ + G H FR ST + E + W ++AIE+QL+H Sbjct: 301 MKHPSQPISATTLNRALEYMDLRGWHC-HDFRATASTHLYESQLWRSEAIEMQLSHKESD 359 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + YNHA+Y D+R +MM WW L+ + Sbjct: 360 KTKAAYNHAKYWDERSKMMVWWGHRLEPLI 389 >UniRef50_A5V414 Phage integrase family protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V414_SPHWW Length = 417 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 132/395 (33%), Positives = 202/395 (51%), Gaps = 14/395 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI AAK +L DG GL L V SG KVW+L+Y+ +GK+K L +G +P + + Sbjct: 3 LTHIQIAAAKASNGALKLSDGRGLTLVVQPSGSKVWRLKYRYEGKQKTLHLGHWPKVGIS 62 Query: 62 EARDKAWTARKDISVGIDPV--------KAKKASSNNNSFSAIYKEWYEHKKQV-WSVGY 112 EAR + ARK I G DP AK NSF A+ +EW E ++ S Sbjct: 63 EARIRREDARKLIEEGTDPALVKRFGPVAAKVKIVAGNSFRAVAEEWLEKCEREGLSQVT 122 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + D P +G I+ I P+ L V+++ E G +E A + R +FR+A+ Sbjct: 123 LNKIRWLLDK-AYPALGSKPIEVIRPLDALAVLKKLEAEGILESARRLRSVLSRIFRFAV 181 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TGR + + A DL A+ + KN + A + +A+ +SG ++ IA + + Sbjct: 182 ATGRIERDVAADLRGAIATPKGKNLAAITTAREAGVLLRAIENYSGHEITAIALECSAHL 241 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R ELR W +D + I I K R+ H VP+S Q++E L L +T ++ Sbjct: 242 FVRPGELRQAEWPELDADEAIWAIPPEKTKMRRPHWVPLSRQMMEKLHRLHDLTGG-GKY 300 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPADAIEVQLA 349 +F + P+ EN V L ++++G+ + + HGFR +T++NE W DAIE QLA Sbjct: 301 LFPCLGNDDMPMSENTVNLALRRLGFGQDQMTAHGFRAMAATLLNESGQWHPDAIERQLA 360 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H VR Y +Y +R MMQWW+D ++E Sbjct: 361 HIETNEVRRAYTRGEYWPERVRMMQWWSDHIEELR 395 >UniRef50_Q48NQ4 Prophage PSPPH01, site-specific recombinase, phage integrase family n=2 Tax=Pseudomonas RepID=Q48NQ4_PSE14 Length = 391 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 193/386 (50%), Gaps = 10/386 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP + +L D GLYL V G K+W+ R+++ GKE +G YP ++L Sbjct: 3 LTDLKIRQAKPGKTSSKLTDSGGLYLEVTTGGSKLWRYRFRLAGKENTYAIGAYPEVSLS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + AR + G +P ++ N+F + +EW E + + Y + Sbjct: 63 DARTERDAARDLVKSGRNPAHVRQTEKAQQLTENRNTFKIVSQEWIEKRLAQRTQKYRDQ 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F +D+ P IG L +++I Q+LE+I + R A A R+ VF Y + T Sbjct: 123 IERAFVNDVYPRIGRLPLREITAAQVLEIITAMDRRNATTLALMVRQWISAVFCYGVATL 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +PA + A++ + + ++ + +A+ T+ G ++IA +L +RT Sbjct: 183 RADSDPASAVRGAIRRNEVNHSRPMSLIELREYFRAVKTYGGHRRTVIALYLLPILFVRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + + TI A MK RKIH+VP+ + + LL L IT +F G Sbjct: 243 IELRLAEWSEFDLDAALWTIPARRMKKRKIHLVPLPESALALLRELREITAGN--LLFPG 300 Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGG 354 K+PI + ++ + +G H FR ST + E E W +D IE QLAH Sbjct: 301 MRHPKEPISATTLNRALEYMDLKGWHC-HDFRATASTHLYESELWSSDVIEFQLAHVEQK 359 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWL 380 + YNHA YL R+ +MQWW +++ Sbjct: 360 KSKAAYNHASYLPARKALMQWWDNYI 385 >UniRef50_D2LIX3 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LIX3_RHOVA Length = 392 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 204/387 (52%), Gaps = 9/387 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ +I KP E+ ++L D +GLYL V +G K+W+L Y+ GK K L +GKYP + L Sbjct: 3 LSDLKIRTTKPTERDFKLSDADGLYLLVRPNGSKLWRLNYRHLGKNKTLAIGKYPDIALS 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 ARDK AR+ ++ G+DP K+ N+F A+ +E+ + S G Sbjct: 63 TARDKRAEARRLLAEGVDPSYRKQVEVAKAKVAAANTFEAVAEEYLASLARDRSEGTVRA 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + P++G I ++ P ++LE ++ EDRG ++ A++AR G+VF+ A ++ Sbjct: 123 NSHILRKKVYPLLGRRPIAELRPHEILEALQSIEDRGQVDMAHRARTLIGKVFQLAALSD 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA +P L +K +R +N + ++Q + + T+ GS A L +T +R Sbjct: 183 RAPTDPTVVLRGRLKSWRVQNRASVTSEQTFAPLLRRIDTYEGSPNVRAAMLFLAHTFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 T ELR W +D E+ + I MK + H VP++ +L ++ +++F Sbjct: 243 TVELRFATWSEIDLEDGVWRIPEERMKMGRPHDVPLTASTRAILRDMAKFR--RGDYIFV 300 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + K + + + +K IGY+G + HGFR S+I+NE + +D IE+QLAH Sbjct: 301 SAHVGKSVLGDGTLRKAMKSIGYQGRMTPHGFRSSASSILNERGYRSDVIEMQLAHVEKN 360 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLD 381 +VR YN Y ++R MMQ W++ +D Sbjct: 361 AVRRAYNRTLYWNERVSMMQDWSNLVD 387 >UniRef50_C6XEE3 Integrase family protein n=2 Tax=Proteobacteria RepID=C6XEE3_METSD Length = 406 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 127/395 (32%), Positives = 219/395 (55%), Gaps = 16/395 (4%) Query: 2 LTVKQIEAAKPKEKPY-RLLDGNGLYLYVPVSGKKVWQLRYKI---DGKEKILTV--GKY 55 LT A + K +L DG GLYL+V +G K W+ RY I GK+K +++ G Y Sbjct: 5 LTDLACRKATCEGKTLSKLSDGGGLYLWVYANGAKYWRFRYFIHVEGGKKKEMSLSLGVY 64 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWS 109 P ++L +AR +A + + GIDP AKKA ++F+ I +EWY W+ Sbjct: 65 PEVSLNDARVEARKYQGLVDNGIDPATAKKAKLLQTKAEAGDTFAEIAREWYRKMMPTWT 124 Query: 110 VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 +A ++ + + +++P I I ++E + L+ + + ++RGA +++ +V++ Sbjct: 125 ETHARDIERRIEINLIPFIPQKPIAELEAVDFLKPLEKVQERGATHLSHRLLINIRQVYK 184 Query: 170 YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFS--GSIVSLIATKV 227 YAI G+ KY+ P L +A+ + KN P + +++P +A + G + + ++ Sbjct: 185 YAIAKGKCKYDVTPGLGNALIPHVAKNQPAIRPEELPKLMTDIADYHKLGEMKVQLGLQL 244 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 + + LRT+EL W +D+E + + MK + H++P++ QV +L L + + Sbjct: 245 MAHVWLRTRELTFGRWDELDYEANLWRVPGERMKMDRDHLIPLTPQVKVILERLRVLARG 304 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 SE++ GRN P+ N +L + ++GY+ +GHGFR STI+NE + ADAIE Q Sbjct: 305 -SEYILPGRNHL-TPVSNNTLLYALYRLGYKSRMTGHGFRSVASTILNESGFNADAIERQ 362 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH +VR YN A+Y+D+RR+MM WW+++LD+ Sbjct: 363 LAHVPENAVRAAYNRAEYIDERRKMMLWWSEYLDK 397 >UniRef50_Q1QA94 Phage integrase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QA94_PSYCK Length = 413 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 127/390 (32%), Positives = 211/390 (54%), Gaps = 12/390 (3%) Query: 2 LTVKQIEAAKP------KEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKY 55 LT I +P ++P + DGNGL L+V +G K W Y+ GK++ LT+G Y Sbjct: 3 LTHTVINKLQPSSTSIDTKRPDKHSDGNGLQLWVRYTGVKSWISAYRWQGKQQTLTIGTY 62 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKKASSNN----NSFSAIYKEWYEHKKQVWSVG 111 P+M+LQ AR + ++ I+ G++P KK + N F I + WY +K + Sbjct: 63 PVMSLQNARQRNIEIKRLIADGVNPKDHKKEQQASQDGLNIFDNIAQSWYAERKTYLAES 122 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 T + D+ P IG I DI +L + + E RGA E A + R G++F++A Sbjct: 123 TFTRNYSAYMRDVKPSIGQKNINDITAPDILAIGKAVESRGANEMARRTIREVGQIFKHA 182 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 I G A +NPA DLA+A+K ++ N + + Q+P + + G ++ + L YT Sbjct: 183 IRNGLATHNPATDLAEAIKPHKTTNHHRITSQQLPKLLTDINAYQGDVLVKLGLWFLCYT 242 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +RT E+R M W +D+++ + I A MK +++H+VP++ Q + +L + + ++ Sbjct: 243 FVRTNEIRFMEWSEIDYKHGLWRIPADKMKAKRLHIVPLAPQAMAILEQIKEL-GFSDQY 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF + +K P ++A + + +GY+G +GHGFR ST ++E E+ +AIE+QLAH Sbjct: 302 VFFNTSTRK-PYSQSAFINALWNMGYKGKMTGHGFRGLASTTLHEKEFMHEAIELQLAHD 360 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + YN AQ+L R +MM WA+++D Sbjct: 361 RENKISAAYNGAQHLPYRIDMMHQWANFID 390 >UniRef50_Q3JXH9 Integrase or site-specific recombinase n=24 Tax=cellular organisms RepID=Q3JXH9_BURP1 Length = 414 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 112/390 (28%), Positives = 187/390 (47%), Gaps = 8/390 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEK-ILTVGKYPLMTL 60 L +I+A KPK Y + DG GL L V SG K W+ RY + GK++ ++T+G+YP ++L Sbjct: 13 LNDTRIKALKPKAARYTVSDGGGLVLEVMTSGSKFWRYRYSLHGKQQPVVTIGEYPAVSL 72 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN----NSFSAIYKEWYEHKKQVWSVGYATEL 116 AR++A + ++ G+ PV + ++ + W E + S Y Sbjct: 73 TAARERARRYAEIVAGGVSPVADARKDRGAVKSLDTIHEFAEYWIEQQMMGKSAEYLRTT 132 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + DI P IGG + D+ P +L + R + RGA + A R ++ YAI Sbjct: 133 RRALEKDIYPAIGGKSVSDVTPGDVLAICDRIKKRGAPKMALSTRNILKRIYEYAIARQL 192 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NPA + + L ++I +A+ S +A +L T +R Sbjct: 193 VTSNPAQAIVARFVATQASRDRVLSPNEIGRVLRAVYASSIRRPLKLAIHLLVLTMVRKS 252 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 EL W D + I I A MK + H V ++ Q V +L L + T+ ++VF Sbjct: 253 ELIEARWDEFDLDASIWRIPAERMKKDREHWVYLAPQAVAMLRELHA-TRTSHQYVFPSS 311 Query: 297 NDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 +PI ++ + ++ + + H FR ST ++E P+DAIE LAH+ G Sbjct: 312 RGADRPIAKSTLNQAVRALDMDVQHFVLHDFRRTASTHLHEMGQPSDAIEKALAHSIKG- 370 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 ++G+YN A+Y D+RR + WAD++D +++ Sbjct: 371 IKGVYNRAEYADERRRITALWADFVDAQID 400 >UniRef50_B3A9A3 Prophage integrase n=2 Tax=Escherichia coli O157:H7 RepID=B3A9A3_ECO57 Length = 412 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 119/394 (30%), Positives = 187/394 (47%), Gaps = 14/394 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LTV +++ KP+EK Y + DG GL L V +G KVW+ RY I K + T+G++P + Sbjct: 6 LTVTEVKGMKPREKDYAVYDGFGLLLNVSKAGGKVWRFRYSHPITKKRQTYTIGRFPEFS 65 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKK-QVWSVGY 112 L EAR+ R+ I+ G+DPV KK +F A+ W+ KK Sbjct: 66 LAEAREVRDELRRMIARGVDPVTEKKNRKIEMSLKNLQTFEAVANAWFAFKKGSELRKPT 125 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + ++P G I+ I + + D+ A++ K R E+ YA+ Sbjct: 126 LYNIEYEVYKYLVPFFGKYSIEKITAPVAINALDAVSDKNALQ--KKLISRLNEIMNYAV 183 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV-SLIATKVLRYT 231 G K NP + A G + K+ LP +++P F + + + A T Sbjct: 184 NCGALKANPLLKIKTAFTGKKNKSLAALPVERLPEFLSWWDSVPHTYQIAHNALLFQILT 243 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R E W +DF++ + I A MK + HVVP+S Q + +L T+ I + Sbjct: 244 MVRPGEAIKAEWSEIDFDSGLWIIPAHKMKCHREHVVPLSSQAISILRTMQEI--KRGRY 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF K P+ N + I ++G+ + HGFR +ST++NE + D IE LAH Sbjct: 302 VFFSSRTKDAPMGRNTIKTPIAASKFKGIVTLHGFRSMWSTLLNEEGFNPDVIEAALAHK 361 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +G +R IYN YL++R+ MMQW D+ D+ + Sbjct: 362 SGDKIRDIYNRTIYLEQRKIMMQWVGDFFDDARK 395 >UniRef50_Q0I4P6 Integrase n=14 Tax=Pasteurellaceae RepID=Q0I4P6_HAES1 Length = 418 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 100/401 (24%), Positives = 197/401 (49%), Gaps = 17/401 (4%) Query: 1 MLTVKQIEAAKPKEKPY------RLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTV 52 +L ++I+AAKPK +L DGNGLYL V +G K+W+ Y + K +++ Sbjct: 7 LLNNRKIDAAKPKADEQGNLTDNKLQDGNGLYLLVKATGSKLWRFNYYKPLTKKRTEMSL 66 Query: 53 GKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHK-- 104 G YP ++L +AR+ R ++ IDP + ++ N++ A+ W+E++ Sbjct: 67 GAYPDVSLAQARELRNQYRSLLAQDIDPNEHRQNVKQAKLDEINNTYEAVAWAWFEYRQT 126 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 K+ +S GY ++A + +LP G L I I L+ ++++D G +E+ + ++ Sbjct: 127 KKNFSEGYKKDVASLIKRCLLPHFGSLPISQITAPMALKAFKQYQDEGTLEKLKRTIQKH 186 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 E+ +A+ +NP +++ ++F + + +P F L ++ + Sbjct: 187 NEIMNFALHRDLISFNPTANISKEFDSPTVEHFKTIQPEDLPEFMYTLNNAQINLRTRYL 246 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 T R E ++++D ++R+ TI A MK H + +S Q + LL + + Sbjct: 247 ILWQLLTMTRPNEAAKARYEDIDEKSRLWTIPAENMKRGIAHKITLSRQAMALLREIKKL 306 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAI 344 + + ++F + + IK++GY+G HG R ST +NE + ++ I Sbjct: 307 SGGKT-YLFPNVKYPQTHVNTQTANAAIKRMGYQGKLVAHGLRSIASTYLNEKGYNSELI 365 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 EV L+H N ++ Y+ + L++R +++Q WAD+++E + Sbjct: 366 EVALSHINSDRIKAAYDRGERLEQRFKLLQVWADFVEECSQ 406 >UniRef50_A9IGA6 Phage-related integrase n=50 Tax=root RepID=A9IGA6_BORPD Length = 657 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 128/407 (31%), Positives = 206/407 (50%), Gaps = 28/407 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + AK K Y L D + L L V +G K W RY GK+K + +G YP ++L+ Sbjct: 17 LSDLIVRQAKTTGKRYTLYDNDCLSLMVSAAGGKSWMFRYSWLGKQKRMALGGYPALSLR 76 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSV---GY 112 EAR + A+ I+ GIDP + + +F ++ W EH+++ Sbjct: 77 EARAERDKAQALIARGIDPQIERDQRRHAAKLAGEYTFKNVFDAWVEHRRKELKEGRQST 136 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA- 171 +++ ++F+ D+LP +G + I DI QLL V+ E R A A K R ++FRYA Sbjct: 137 LSQILRIFNKDVLPTLGKMSIYDIRRPQLLGVLAAIEKRKAFTTAEKVRTWFNQMFRYAL 196 Query: 172 -IVTGRAKYNPAPDLAD-AMKGYRKKNFPFLPADQIPAFNKALATFSGS-IVSLIATKVL 228 I G + NPA DL A + P+L ++P F + L ++ + + ++L Sbjct: 197 VIAEGL-EVNPAADLDVVAEPKPPVAHNPYLHLPELPEFLQKLRRYNPRGWQTQLGVRLL 255 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMK-----GRK---------IHVVPMSDQV 274 T +RT ELR + D + I V+K RK ++VP+S Q Sbjct: 256 FLTGVRTGELRLAEPEQFDLDRGFWIIPPEVVKQLQDEMRKAGKRPQDVPPYIVPLSLQA 315 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM 334 +E++ L + +P +++ + R++ KK I EN + ++ +GYEG +GHG R ST + Sbjct: 316 IEIVRYLLGVMRPAQKYLLSHRSELKKRISENTLNKAVQLMGYEGRLTGHGIRGTISTAL 375 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 NE +P ++ QL+H++ V YNHA+Y++ RR MMQ WAD LD Sbjct: 376 NEIGYPKIWVDAQLSHSDPNKVSSAYNHAKYVEPRRRMMQDWADRLD 422 >UniRef50_B6BKY5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BKY5_9PROT Length = 400 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 132/394 (33%), Positives = 198/394 (50%), Gaps = 16/394 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT QI+ AK KEK Y L DG GLYL V ++G K W+ RYK + K K +++G YP TL Sbjct: 8 LTETQIKNAKAKEKTYILSDGAGLYLEVNINGGKWWRFRYKYNDKIKKVSLGVYPDTTLA 67 Query: 62 EARDKAWTARKDISV-GIDP----VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 AR K AR ++ DP V KK +F + + S + T Sbjct: 68 NARRKRDEARNILANDNRDPFIKIVVHKKEEVVQKTFQEWAEWYITEISTELSDTHITRT 127 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT-- 174 K F D+ PIIG + DI+ +++++ ++RGA+E A K VF A+ Sbjct: 128 VKGFKKDVYPIIGSKRMNDIKARDIIKIMHIMKERGAVESARKTFSSINRVFAKALSNFP 187 Query: 175 GRAKYNPAPDLA--DAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYT 231 NP D+ D + + N+P + ++ KA+ ++G +++A ++ +T Sbjct: 188 DEIDRNPTADIKLGDILGAKQTTNYPIITEPKELATLLKAIKEYTGDTSTILALTMIAHT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R +R W +DF + I AS MK +K +VP+S QV+ELL S Sbjct: 248 FVRPINIRLARWDEIDFNTKQWVIPASKMKTKKELIVPLSKQVIELLKEAK----SDSAL 303 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPADAIEVQLA 349 VF K P+ +NA++ ++++GY H FR FSTI +E + D IE QLA Sbjct: 304 VFPSIRSKTSPMSDNALVGALRRMGYSREEIVAHSFRGIFSTIAHEKGIYAHDVIETQLA 363 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 H G SV YN A+YL++R +MMQWW+D+L Sbjct: 364 HTVGSSVSQAYNRAKYLEERTKMMQWWSDYLTTL 397 >UniRef50_Q4K6S7 Site-specific recombinase, phage integrase family n=4 Tax=Proteobacteria RepID=Q4K6S7_PSEF5 Length = 413 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 132/391 (33%), Positives = 190/391 (48%), Gaps = 11/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 L + +P+ K YR LDGNGLY V G K WQLRY + G + +G YP ++ Sbjct: 11 LADTTLTGLEPEAKEYRELDGNGLYFRVKPDGGKSWQLRYKRPAGNWAWMGLGGYPEVSG 70 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKK-QVWSVGYA 113 AR+KA RK IS GIDP++ K+++ +F A W + K+ + + Sbjct: 71 ALAREKAAELRKTISSGIDPLEQKRSAKAAIDAAKTRTFRAAADAWLKAKEEKGLAPSTL 130 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ D DILP +G + +I E+ E R A A K R ++F AI Sbjct: 131 NKIRTYLDKDILPALGDKPLDEITRTDCAELQASIEARDAHNVAEKCRTWINQIFGRAIG 190 Query: 174 TGRAKYNPAPDLAD-AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G + +P L D A + + + P L ++ F AL + + A + +TA Sbjct: 191 LGLTENDPGSRLRDIAAQAPKTQQHPHLLEPELGEFLTALKNTPSRLTARTAAWLCIWTA 250 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R +R WK D + T A+ MK R+ V P+ Q + L L +T S ++ Sbjct: 251 SRPGMVRLAEWKEFDLDKATWTTPAAKMKMRRDFVCPLPHQAIAALKELHCLTG-RSRWL 309 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 F G K I EN + V IGY+G GHG RH ST++ EH WP + +E QLAH Sbjct: 310 FPGVGAKNPTISENTINKVFATIGYKGRLVGHGTRHTASTLLREHGWPKEHVEAQLAHKE 369 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 G + G+YN AQYL++R MMQW+AD LD Sbjct: 370 EG-ISGVYNKAQYLEQRITMMQWYADHLDAL 399 >UniRef50_C4GIW0 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIW0_9NEIS Length = 394 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 118/394 (29%), Positives = 201/394 (51%), Gaps = 12/394 (3%) Query: 2 LTVKQIEAAKPKEKPYR-LLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 LT Q + P +K + L DG GLYL + G++ W+++Y + K+ +G YP M L Sbjct: 3 LTDNQCKHTPPPDKGVKQLSDGGGLYLQIDAKGRRYWRIKYTYNQKQHTQHLGIYPAMPL 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHK--KQVWSVGY 112 + AR + + +S GI+P ++ N+F + ++W+ K K W + Sbjct: 63 KAARMERDKIKLLLSQGINPKTHQEQQQRAEQKRITNTFEHVARKWHTTKAEKGDWKPAH 122 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 AT + + + ++P +G L I DIEP+ +L I+ E G + ANK +F +A Sbjct: 123 ATRVLRQIELYLIPPLGSLSIADIEPLDILHAIQNVEHTGKIATANKVYDIAHAIFSFAA 182 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYT 231 YN A +L ++ + + + ++ A +A+ ++GS + ++ Sbjct: 183 RMKLCPYNAAAELKPELQQAKATPYRHVTDTGELTALLQAIDGYTGSPQVKVLLQLAPLV 242 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 R ELR + W ++DF+ A MK H+VP+S Q + LL++L +T E+ Sbjct: 243 FARPSELRLLKWADIDFQAACYHKAAHEMKNGIAHIVPLSRQALALLSSLKPVTGHY-EY 301 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF KP+ E A + +IG+ + HGFRH ST+++E ++ +D IE QLAH Sbjct: 302 VFHN-KAAGKPLSEAAARKALSRIGWLDKVTLHGFRHTASTLLHEQQYSSDWIERQLAHK 360 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + + R YN A++L++RR+MMQ WAD+LD + Sbjct: 361 DPNTTRASYNFAKHLEQRRQMMQEWADFLDSLKD 394 >UniRef50_B2UB26 Integrase family protein n=2 Tax=Ralstonia RepID=B2UB26_RALPJ Length = 415 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 105/395 (26%), Positives = 183/395 (46%), Gaps = 15/395 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKPKE+PY+L DG GL++ V G K W+ +Y + GK + + +G YP + + Sbjct: 8 LTPTRINNAKPKEQPYKLTDGGGLFVLVHPGGSKAWRYQYMLSGKRRSVLIGSYPEIGVS 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNS-----------FSAIYKEWYEHKKQVWSV 110 +ARD+ R + G DP + ++ F A +W + + + Sbjct: 68 DARDRHAEYRAMVEQGTDPAEHRRQDKAERKAKESLQEDEGLFKAFSLKWIDERLATKTE 127 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 GY +++ + + P+IG ++D++P LLE+I R A R +++ Y Sbjct: 128 GYRSQIKSRLERFVWPVIGRKALEDVKPSHLLEIIE--ARRATPNTAEGVRVIIQQIYNY 185 Query: 171 AIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 AI + NPA L + + ++ L ++ AF +AL + A ++L Y Sbjct: 186 AIQKLLVESNPAVPLRGVITVPKAEHHRHLSESELGAFWRALGRQGAHPATTAAARLLVY 245 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 + R E+ W D + I A MK R+ H V +S Q +ELL + +I+ Sbjct: 246 SMCRKSEVLRAKWAEFDLDKAQWDIPAERMKSRRPHRVYLSRQAIELLEIMRAISGD-GV 304 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 +V P+ E + + K++ + S HG R +T++ EH + D +E+ LA Sbjct: 305 YVLPSVKIASVPLAEATLNHLFKRLDFGVPEFSPHGTRGTAATLLREHGFSRDVVELLLA 364 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H Y+H + +RR+ +Q+ AD +D + Sbjct: 365 HTERSQTAASYHHHELEAERRKALQYLADEIDRQA 399 >UniRef50_B7I6Z3 Site-specific recombinase, phage integrase family n=3 Tax=Moraxellaceae RepID=B7I6Z3_ACIB5 Length = 414 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 122/399 (30%), Positives = 194/399 (48%), Gaps = 20/399 (5%) Query: 2 LTVKQIEAAKPK-EKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLM 58 LT +I+ AK + K +L DG+GLYL + + K W+ Y K + G YP + Sbjct: 8 LTDTKIKKAKSENGKSLKLSDGSGLYLLIDKNQNKFWRFDYSRPYTKKRNTIGFGSYPEV 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGY 112 +L +AR K AR ++ IDP +K N+F+A+ EW KQ ++ Sbjct: 68 SLADARSKRDEARTLLAQNIDPQVERKRVEQEHINSEKNTFAAVAAEW--ESKQDFAEST 125 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ I IG I + P+++L + R +E +G +E A K + +CG++ RY + Sbjct: 126 IRGHKRLL-QVINSNIGKKPIDKVTPVEVLNICRIYEKQGKLETAKKVKVKCGQIMRYGV 184 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYT 231 TGR + + DL A+K + K+ L + + + G+ ++ +A K+ Y Sbjct: 185 ATGRCERDVTQDLRGALKTPKVKHLSALTESNEFAELLYDIDFYEGTFITQMALKIAPYV 244 Query: 232 ALRTKELRSMLWKNVDFENRIITI--DASVMKGRKIHVVPMSDQVVELLTTLSSIT---K 286 +R ELR W ++D E + + K H+VP+ QV LL + +T Sbjct: 245 FVRPGELRYAKWPDIDLEIDLWRYTPPKTKNKTGVQHLVPIPRQVKVLLLKIKELTYDPD 304 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNE-HEWPADAI 344 SE+VF K KP+ EN + ++++GY GHGFR TI+ E +P + I Sbjct: 305 GESEYVFPSMTSKLKPMSENTINQALRRLGYTSEQVCGHGFRASARTILEEVLNYPIEII 364 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 E QLAH YN ++L+KRREMMQ WAD+ D+ Sbjct: 365 EQQLAHKVKDMHGRAYNRTKHLEKRREMMQSWADYCDQI 403 >UniRef50_B0RRY6 Complete genome, strain B100 n=3 Tax=Proteobacteria RepID=B0RRY6_XANCB Length = 409 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 144/393 (36%), Positives = 210/393 (53%), Gaps = 15/393 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT I AKP P +L DGNGLYL + G + W+ Y+ + GK L+ G YP ++ Sbjct: 3 LTDTAIRRAKPAATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPEVS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYA 113 L +AR++ AR+ ++ IDP + +KA NSF + +EW+ +++ WS YA Sbjct: 63 LADARERLAEARRLVAAKIDPGEQRKAVKAAGEAAAANSFEVVAREWFAKQQKEWSPQYA 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ + DI P IG I I +LL+ + R E RGA+E A++A + CG VFRYA+ Sbjct: 123 EKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQRGAIETAHRALQTCGAVFRYAVR 182 Query: 174 TGRAKYNPAPDLADAMKGYRKKNF-PFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGRA+ +P L A+ +R F +++ + + + V A ++ Sbjct: 183 TGRAEADPTGALKGALTPWRSMPFAAATTSEEATTVLRKIDISTSRPVVRSALRLAPLLF 242 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R EL M W +D + V K ++ H+ +S Q +E+L L +T EFV Sbjct: 243 ARPGELVRMRWTELDLDAGQWRY--FVTKTKRTHIAALSTQAIEILRDLHPLTG-RGEFV 299 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMNEHE-WPADAIEVQLAH 350 F G D +K + NA+L+ ++ G E E + HGFRH ST++NE W DAIE L H Sbjct: 300 FPGGRDPRKHMSGNAILVAARRCGIEKDESTIHGFRHMASTLLNEMGHWNPDAIESALTH 359 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 G VRGIYN AQYLD+RR+MMQ WAD LD Sbjct: 360 KMPG-VRGIYNQAQYLDERRKMMQSWADNLDTL 391 >UniRef50_A4VPC8 Site-specific recombinase, phage integrase family n=6 Tax=Proteobacteria RepID=A4VPC8_PSEU5 Length = 455 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 109/393 (27%), Positives = 187/393 (47%), Gaps = 16/393 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +LT +I++ KP ++ ++L DG GL+L V +G K+W+ +Y++ GKE + +G +P ++L Sbjct: 57 LLTDAKIKSVKPTDRDWKLSDGGGLFLLVKPTGCKLWRWKYRLQGKENLFAIGSFPQVSL 116 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNN-------------SFSAIYKEWYEHKKQV 107 EAR AR + GI P ++ N SF+ + + + K V Sbjct: 117 AEARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRARESSFAKVAQAYLTEIKPV 176 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 ++ + P G+ + DI Q+ ++ + GA A + + Sbjct: 177 FAYSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKTHGAWA-AIHVKGDLSAI 235 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 F +A+V G + NP P L ++ ++ + +QI F +AL + G + + ++ Sbjct: 236 FEFAVVRGLVEANPIPSLRGLLRAPASESKAAMTREQIQKFYQALRGYRGYPETALCLRL 295 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 + TA R E W+ DFE+ + A+ MK R+ H+ P+S Q + +L L IT Sbjct: 296 IALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARRDHISPLSTQAIAVLKGLQRITG- 354 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 ++F R+ K N + ++ + + H +R FST NE+ + DAIE Q Sbjct: 355 GGRYLFPHRSGKG-FTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIERQ 413 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 LAH VR YN A LD+RR ++Q WA +L Sbjct: 414 LAHVESNKVRATYNKALLLDQRRSLLQAWAGYL 446 >UniRef50_B1Y4T5 Integrase family protein n=3 Tax=Betaproteobacteria RepID=B1Y4T5_LEPCP Length = 427 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 117/389 (30%), Positives = 192/389 (49%), Gaps = 26/389 (6%) Query: 1 MLTVKQIEAAKPKEKP--YRLLDGNGLYLYV------PVSGKKVWQLRYKIDGKEKILTV 52 MLT + AK E RL D GLYL V SG K+W+ +Y+ GKEK+L + Sbjct: 1 MLTDTECRNAKCPEGRAFVRLADAGGLYLEVKPPGAKTPSGSKLWRWKYRHGGKEKLLAI 60 Query: 53 GKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQ 106 G YP +++ AR + AR + G DP +A+K + + SF A+ ++W+ K Sbjct: 61 GAYPAVSVAGARREQAKARALLDAGTDPGEARKEAKYAKLNEHETSFEAVARQWWAGWKA 120 Query: 107 VWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGE 166 + YA + + + D P+IG + + + + ++ E RG E A + G+ Sbjct: 121 NKTERYAEYVLRRLELDAFPVIGAKPVAGLTAPDFVRMAKKIEARGVGELARRIMETSGQ 180 Query: 167 VFRYAIVTGRAKYNPAPDLA--DAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 V R+A+ G + NP D+ D +K +NF + A ++P + + + GS+ + +A Sbjct: 181 VMRWAVAHGLTERNPTADVKPGDILKPRTVENFARVGAAELPDLMRHINAYDGSVFTRLA 240 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMK------GRKIHVVPMSDQVVELL 278 +++ T +RT EL W+ D + TI + R+ H+VP++ Q + +L Sbjct: 241 LQLMALTFVRTSELIGAQWQEFDLDAAEWTIPPDRIGRKGRQGERRAHLVPLAPQALAVL 300 Query: 279 TTLSSITKPVS----EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM 334 L S +F G D ++P+ N +L ++++GY+G +GHGFR ST + Sbjct: 301 RLLQSARGADRCRGPALLFPGERDHERPMSNNTMLKALERMGYKGKMTGHGFRGIASTAL 360 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHA 363 NE + D IE QL+H G VR YNHA Sbjct: 361 NEMGFRFDVIEAQLSHIEGNRVRAAYNHA 389 >UniRef50_B2I529 Integrase family protein n=3 Tax=Proteobacteria RepID=B2I529_XYLF2 Length = 410 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 107/392 (27%), Positives = 189/392 (48%), Gaps = 12/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++A KP+++ Y + D GL + V +G VW+ RY++ G+ + LT+GKYP ++L+ Sbjct: 3 LTDTALKALKPRDRIYSVADERGLSVEVYPTGGIVWRFRYRLAGRYEKLTLGKYPALSLR 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS----NNNSFSAIYKEWY-EHKKQVWSVGYATEL 116 AR K A +++G P + K+ + + + + ++ E + + Sbjct: 63 NARLKRDEAASLVAMGTSPARQKQLAKVTAADAMTVRDFAERFFREIQSRDRKDSTM--P 120 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D DILP +G ++++ ++ +I R +++G A + R + YA+ G Sbjct: 121 RRYLDKDILPFVGDKPMREVTAEEIRSLIWRKKEQGFDATAGQIRGVLKRLCDYAVTCGL 180 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NP L L D+I F +A+ +A ++ T +R Sbjct: 181 MPTNPVLALPMRHVYKAVSRDRALSPDEIRLFLRAVWASRIRRQFKLALHLILLTMVRKS 240 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 EL W +V + I A K K H+V +S Q V L L + S V G Sbjct: 241 ELLLARWDHVHLDQAQWHIPAEHSKTGKPHIVYLSRQAVVLFEALRVLAGG-SALVMPGS 299 Query: 297 NDKKKPICENAVLLVI-KQIGYEGL--ESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 +P NA+ + K + ++G+ + H R ST ++EH W +D +E L H+ G Sbjct: 300 GTLTRPFAHNALNHALGKAMQWQGIHAFTIHDLRRTASTWLHEHGWASDVVEKALNHSIG 359 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 G VRG+YN A+Y D+RR+M+Q WAD+++++++ Sbjct: 360 G-VRGVYNRAEYADQRRQMLQCWADFIEKQLK 390 >UniRef50_Q167M4 CP4-like integrase, putative n=40 Tax=Alphaproteobacteria RepID=Q167M4_ROSDO Length = 409 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 121/393 (30%), Positives = 197/393 (50%), Gaps = 12/393 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ +I K ++K Y++ D + LY+ V +G K+WQ++Y++DG+EK L++G YP ++LQ Sbjct: 17 LSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDGREKTLSIGAYPAVSLQ 76 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVG-YAT 114 +AR AR I+ G DP + K+ +F I + + +++ Sbjct: 77 QARKSRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKATLD 136 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + A G I I +L +R+ E +G E A++ R R G VFRYA+ + Sbjct: 137 KTAYHLKL-ANHDFGKKPITAITAPMILRTLRKVEAKGNYETAHRLRARIGSVFRYAVAS 195 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G A+ +P L DA+ +++ + A + + F G + + IA ++L A Sbjct: 196 GLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQVTTRIALQLLALLAQ 255 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R ELR W D +++ I A MK R+ H VP++DQ + LL L +T SE++F Sbjct: 256 RPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGE-SEYLF 314 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGL-ESGHGFRHEFSTIMNEHE-WPADAIEVQLAHA 351 +P+ EN + ++++GY G + HGFR FST+ NE W DAIE LAH Sbjct: 315 PSLRSWHRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIERALAHE 374 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 VR Y + ++R ++ WWA LD+ Sbjct: 375 ERNEVRRAYARGAHWEERVKLSDWWAGRLDDFR 407 >UniRef50_A7H0X5 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter curvus 525.92 RepID=A7H0X5_CAMC5 Length = 396 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 114/394 (28%), Positives = 197/394 (50%), Gaps = 13/394 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLM 58 +L +I+A KPKEK Y++ DG+ LY+ V SG K + + + G+ K +++G+YP + Sbjct: 3 ILNDSKIKALKPKEKRYKISDGDNLYIQVMPSGTKTFIYEFKSRSSGRYKRISLGQYPAI 62 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 +L AR+K +K ++ G +P+ A SF A++ EW++ K++ S A + Sbjct: 63 SLLMAREKRLEFQKALANGDEPMSE--AKQAMTSFEAVFDEWFKFKQKEVSTKQAFTHKR 120 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 ++ LP G +I+ I Q+LE + E ++A ++FR+A++ + Sbjct: 121 YYERFFLPKFGKDDIKTITKRQILEAVESLNKEAKFETLDRALSSISQLFRWAVMNEYLE 180 Query: 179 YNPAPDLAD--AMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTALRT 235 ++P + K + ++ + D I + + G I + A +A R Sbjct: 181 HSPTYGIDKNALFKMPKVNHYAAIFDDDGIRKLVNNIKNYDGDIRVITAALFGLLSAQRP 240 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 +RS W ++FE +I I MK ++ H+VP+ Q ++LL++ + SEF+F Sbjct: 241 FNVRSAKWSEINFEKKIWEIPKEKMKMKEAHIVPLCSQAIKLLSSFKKY-EFRSEFLFPS 299 Query: 296 RNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMN----EHEWPADAIEVQLAH 350 K PI +N+V +++ +GY HGFR FSTI + EH IE+ L H Sbjct: 300 VKSTKIPISDNSVRSMLRNLGYTNDDIVPHGFRAMFSTICHEHIKEHGLEERIIELCLDH 359 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 A V+ YNHA+ L +R ++MQWW D+L Sbjct: 360 AERNKVKAAYNHAKNLKERAQLMQWWGDYLARLA 393 >UniRef50_A5EUW8 Bacteriophage P4-like integrase n=3 Tax=root RepID=A5EUW8_DICNV Length = 399 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 114/389 (29%), Positives = 191/389 (49%), Gaps = 8/389 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ ++ KP EK Y++ D +GL+ V +G +W++RY + GK + L +GKYP ++L Sbjct: 1 MLSDAKLRKLKPTEKKYKIADSHGLFAVVMPNGSILWRMRYVLAGKRRELALGKYPAVSL 60 Query: 61 QEARDKAWTARKDISVGIDPVK---AKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 EAR R+ I G+DP + + + + + K + S Y Sbjct: 61 SEARQIVLLYREQIERGVDPHAQHVERHKKQDGVTVAEAVELLLSEKAKYCSASYLESCR 120 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA-IVTGR 176 + +L G + ++ + +I ++ G A + + GE+++ + TG Sbjct: 121 SRLSNHVLSRFGARALAEVSEDEWRALINWLDNGGKNYTAIRVQDLAGELYKTVRLKTGL 180 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NP ++ +K +N+P + + A+ F+G +A K L R Sbjct: 181 KIANPILEIRGTVKKKPAQNYPRITNPARFGELLHAIDYFNGRWQVYLALKFLPLVFCRQ 240 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR M+W+ VDFE + I A +K R+ H+VP+S Q + +L + S+ VF G Sbjct: 241 IELRRMVWQEVDFERALWCIPAEKIKMRRAHLVPLSTQAIAILRQAEQLR--CSDLVFCG 298 Query: 296 RNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 + ++PI N + ++ +G+ GHGFR +T++NE W + ++ QLAH Sbjct: 299 VRNPRQPISVNTIGSALRTLGFGHDEMVGHGFRGTAATLLNELGWDSHIVDFQLAHWQRS 358 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEK 383 SV YNHA+YL +RREMMQ WAD+ DE Sbjct: 359 SVSSAYNHAEYLTQRREMMQAWADYCDEL 387 >UniRef50_Q1Q875 Phage integrase n=3 Tax=Gammaproteobacteria RepID=Q1Q875_PSYCK Length = 452 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 120/400 (30%), Positives = 194/400 (48%), Gaps = 17/400 (4%) Query: 1 MLTVKQIEAAKPKEK-----PYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKY 55 ML+ +I KP +K P + D GL L V SG + W Y+ DGK++ T+G Y Sbjct: 1 MLSDAKIRKLKPTDKCTPSRPDKYSDQQGLQLLVRSSGTRTWVSAYRFDGKQQKTTLGTY 60 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKKASS----NNNSFSAIYKEWYEHKKQVWSVG 111 P M L EAR + ++ GI+P K+ +F+ EW E +++ Sbjct: 61 PQMGLAEARVANADIKALVANGINPKNKKRQDKLANEQAKTFNDYAVEWLEERERNVKPR 120 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERA------NKARRRCG 165 + D++P G+ ++D+ + E R E A + G Sbjct: 121 TYQQDYNRMHKDVIPSFEGIALKDVTFEDCKLMADNIESRTNNEGASPREVTRRTIDLVG 180 Query: 166 EVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIAT 225 + R A+ + N L + + K+ + ++P + + + G + + Sbjct: 181 NILRRAMRERLIEVNHTDGLKELYPKAKTKHMKHVELSELPKLLQDIEGYHGHDQTRLGM 240 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 K L Y+ RT ELR M W+++DF NR+ +D +K + HVVP+SDQ++ +L + IT Sbjct: 241 KFLAYSFCRTIELRMMKWEHIDFPNRLWRVDIDNLKIARKHVVPLSDQMLAVLEEMKHIT 300 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 E+VF +P E + + +GY G ++GHGFRH ST +NE + DAIE Sbjct: 301 G-QYEYVF-YHTGMHQPYSEEFINNALDILGYGGKQTGHGFRHIASTNLNELGYMGDAIE 358 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 Q+AH S+R +YNHAQ+L++RR++MQ WAD+LD + Sbjct: 359 KQMAHDKKSSIRAVYNHAQHLEERRKIMQVWADFLDLLRD 398 >UniRef50_B8L9U1 Phage integrase family protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L9U1_9GAMM Length = 399 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 132/392 (33%), Positives = 210/392 (53%), Gaps = 11/392 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I AKP EKPYRL DG GL+L + +G K+W+ Y++D K+++L +G ++L Sbjct: 3 LTDFKIRGAKPAEKPYRLSDGGGLFLEIRPNGSKLWRYAYRLDSKQRLLAIGSLQDVSLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +AR A+ + +G DPV +K + N+ + ++WY ++ WS + Sbjct: 63 DARAAMRQAKSQVKLGQDPVLQRKIAKARSEESALNTVAENAEDWYSGAEKSWSASHRDR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + D ILP IG I+++ P +L+++R+ E G A R+ VF +AIV Sbjct: 123 ARRYLDQRILPDIGKWPIREVTPADVLKLLRKAEKAG-PHVAIVTRQTLSSVFEHAIVNL 181 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA +P + A+K + A + L T+ G+ V+ IA ++L T +RT Sbjct: 182 RADADPTHPVRRAIKKPPVMHAVAHSAATMGKLLAGLDTYPGNRVTAIAIELLALTFVRT 241 Query: 236 KELRSMLWKNVDFENR--IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 KELR+ W N+D+E ++ IDA MK R+ H VP++ + V LL L IT ++F Sbjct: 242 KELRTAKWANIDWEAESPLLKIDAGEMKKRRKHWVPLAPRAVALLRELQEITGA-GTYLF 300 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + D KKP+ AV + +K +G SGH FR ST ++E +P+ +++QLAHA Sbjct: 301 PNQRDPKKPMSREAVNMGLKYLGM-DEISGHDFRATASTWLHEAGYPSAVVDMQLAHAKT 359 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 YNHA++L R +MM WAD L ++ + Sbjct: 360 NKTGAAYNHAEFLPDRIKMMDRWADHLAKQKQ 391 >UniRef50_B9D1P3 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter rectus RM3267 RepID=B9D1P3_WOLRE Length = 395 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 116/392 (29%), Positives = 188/392 (47%), Gaps = 14/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKI--DGKEKILTVGKYPLMT 59 LT ++I KPK+K Y+ DG GLY++V SG+K + L YK D K K L +G +P + Sbjct: 8 LTDREIRGLKPKDKIYKKCDGRGLYIFVDPSGRKYFALEYKSPADNKIKRLNLGDFPEFS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L AR++ + + + GID + + N F + + W E K ++ Sbjct: 68 LAMAREERFKLEQKVRDGIDVKHESEINEQAN-FKKLAQRWLEIKAASVEPNTLNRDKRL 126 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + P I DI ++E++++ E +G++E + ++++ A A Sbjct: 127 LEMYAYPFFENRSITDITVTDVIEILKKIEAKGSLEMMKRLYSLLNQIWQSAYY--IAPN 184 Query: 180 NPAPDL--ADAMKGYRKKNFPFLPA-DQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 N + K ++KN+ L I A +++ +SG I + A K TALR Sbjct: 185 NVIASINYRFTFKKVKEKNYATLTKNADIKALWQSIDEYSGDIRTKYALKFAVLTALRPF 244 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 +RS W+ +DF+ +I+I A MK R+ +P+S Q +ELL ++F Sbjct: 245 NIRSAKWEYIDFDEGVISIPAGDMKMREAFTLPLSRQALELLKEYKGYNLDQ-IYLFGSL 303 Query: 297 NDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNE----HEWPADAIEVQLAHA 351 + + EN + + ++++G+ + HGFR FST+ NE H D IE LAH Sbjct: 304 YGSARYMSENTLNVALRRMGFSKDEIVSHGFRAMFSTVCNENIDAHGLNFDIIEKCLAHK 363 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +R YN AQ L + R MMQWWAD+LD Sbjct: 364 GTDKIRAAYNRAQNLAQMRAMMQWWADYLDAL 395 >UniRef50_A1TYD6 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TYD6_MARAV Length = 412 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 121/395 (30%), Positives = 199/395 (50%), Gaps = 15/395 (3%) Query: 2 LTVKQIEAAK--PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT ++ A K +L DG GLYL + +G + W+L+Y+ GKEK+L +G YP ++ Sbjct: 8 LTETAVKHATFSKYGKRTKLADGAGLYLDIQKAG-RYWRLKYRYGGKEKLLALGVYPDVS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEH-KKQVWSVGY 112 L+EAR K A++ ++ IDPV ++ +F I EW EH K+ Sbjct: 67 LKEARAKRDEAKRLLADNIDPVTHRQREKAERVEATATTFKGIALEWLEHVHKKNVGATT 126 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + + + P +G + +IEP +L ++R E +G ++ A++ + G+VFRYA+ Sbjct: 127 YPKNKRRLEMYAYPKLGRRPMAEIEPPDVLAILREIEGKGHVDNAHRLKTLIGQVFRYAV 186 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TGRA + DL + K+ + D+I K + T+ GS +A K+ Y Sbjct: 187 STGRATRDVTADLRGILPAPNVKHHAAVTTPDEIADMLKKIDTYWGSPTVCLALKLSPYL 246 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 LR LR M W+ +D++ T K + VVP++ Q ++LL L + E+ Sbjct: 247 FLRPGNLRHMRWEEIDWDAATWT--TDTTKNGEPLVVPLARQAIDLLKELQELNGNR-EW 303 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAH 350 VF K +P+ ENA+ + ++ +G+ S HGFR T++ E + + IE+Q+AH Sbjct: 304 VFPSGAGKGRPMSENAITGALNRLELQGIMSAHGFRAMAKTVLTERLGFRTEIIEMQMAH 363 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 YN +L +R+ MMQ WAD+LD + Sbjct: 364 RVRDVHGRAYNRTTWLPERQAMMQQWADYLDNLKK 398 >UniRef50_A7JSX8 Bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JSX8_PASHA Length = 413 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 105/399 (26%), Positives = 174/399 (43%), Gaps = 21/399 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPV--SGKKVWQLRYKID--GKEKILTVGKYPL 57 L QIE AK K+K Y L DG+GL L V G K+W Y LT+G+YPL Sbjct: 8 LNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKIWIFNYTNPQTKNRTNLTIGRYPL 67 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYE--HKKQVWS 109 +TL EAR R I GIDP + KK + N++F + + ++ +K++ + Sbjct: 68 ITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAENRVNDTFRNVAESYFNGIYKEKAKN 127 Query: 110 VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 + ++ I P IG +++I+ L+++ + D+ K + V Sbjct: 128 PITREKNWIRLENHIFPYIGDKHVEEIKVKALVDIYSKVADKSN--TLKKLHQLVSAVMD 185 Query: 170 YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 +AI G + + P + +++P L S + Sbjct: 186 HAITQGIIESHNCRLAVKNFYIKPSTPNPTIELEELPQLFTDLHNAKLSKQTYALVCWSF 245 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKG----RKIHVVPMSDQVVELLTTLSSIT 285 TALR E + WK +DFE ++ I MKG ++ H VP+S Q +++L + + Sbjct: 246 LTALRPNEAVNAEWKEIDFEKKLWNIPKEKMKGKADKKRPHSVPLSSQALKILEMMK-MH 304 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 S FVF GR+ KP+ V +K+ GY+ + HG R T ++ + E Sbjct: 305 SNSSPFVFPGRSSNSKPMSNATVNSTLKRNGYKDRLTAHGIRAFVKTFLSSRKVDRHVSE 364 Query: 346 VQLAHAN--GGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 L+H G + YN +L++R +MQ D+ ++ Sbjct: 365 SILSHLLEGGDDLENTYNRYDFLEERVPVMQLLGDYCEQ 403 >UniRef50_D0BVL9 Phage integrase n=2 Tax=Acinetobacter RepID=D0BVL9_9GAMM Length = 441 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 120/404 (29%), Positives = 209/404 (51%), Gaps = 25/404 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMTL 60 L+ + AKP+EK Y L DG+GL L++ SG KVW+ +Y + +GK+ ++T+G +P ++L Sbjct: 8 LSDSKCTGAKPQEKDYSLYDGHGLILFIRKSGSKVWRFKYKRANGKDGLMTLGNFPALSL 67 Query: 61 QEARDKAWTARKDISVGIDPVK----AKKASSNNNSFSAIYKEWYEHKKQV--WSVGYAT 114 + ARDK ++ GIDP++ K N +F +I +EW+ K W A Sbjct: 68 KTARDKRRELETLLANGIDPIEYSEIQKAKLDNKYNFESIAREWHTAYKNTGRWGTETAE 127 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 K ++ + P +G I I+P +L++VI+ ED G E K R+R +F +A+ Sbjct: 128 RALKNMEEYVFPKLGKKPIDAIKPKELIQVIKSIEDLGYTEVVKKTRQRLTSIFAFAMSK 187 Query: 175 GRAKYNPAPDLADAMK-GYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G + NPA L D + K+ P LP +++P LA+ +G ++ + + +T Sbjct: 188 GFIESNPAYGLQDIFILSKKTKHHPQLPLERLPELQAKLASDTGHPITRLCVEFALHTFA 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTTL 281 R+ E+R WK DFEN I TI + K + H++P+S+Q + ++ + Sbjct: 248 RSSEIRFARWKEFDFENAIWTIPPTRDFVEGYKYSHRGAKMKTPHLIPLSNQALAIIKEI 307 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE--GLESGHGFRHEFSTIMNEHE- 338 + VF D + E+ + ++++GY+ GHGFR + + + Sbjct: 308 YKYSGHTQN-VFPKNGDPHGFMSESTINKTLRRLGYDTNTEVCGHGFRGMACAALIQSKL 366 Query: 339 WPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLD 381 + DA+E Q++H +VR Y H A++L++R+ M+ WW+ +LD Sbjct: 367 FQKDAVEKQMSHQERNNVRLAYTHKAEFLEERKTMLNWWSSYLD 410 >UniRef50_Q1NGR6 Putative phage integrase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR6_9SPHN Length = 428 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 130/399 (32%), Positives = 204/399 (51%), Gaps = 18/399 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I++ P +P + DG GL + V +G++ W Y+ K+K +T G YPLM++ Sbjct: 1 MLTDTLIQSIIPAARPIKKADGGGLNICVLPNGRREWCFSYRFHHKQKSITGGDYPLMSI 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA-----SSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR + +S G DP K+ + +F + EW K+ WS YA Sbjct: 61 DRARVWREEMKAALSAGKDPANIKRQLKYEDQAERTTFRQLAYEWMVAKRPGWSDRYAGV 120 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + + DI P IG L ++ I P +L ++ EDRGA E A++ R C E+FR+ I G Sbjct: 121 IERRLEADIFPTIGKLSVRSILPRDMLGALKCIEDRGATEMAHRVRAYCSEIFRFGIPDG 180 Query: 176 RAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 R +P DL M+ + +P ++P F AL +GS +S +A + T +R Sbjct: 181 RVLTDPCRDLGTVMRKRAAVTHRSKIPIKELPHFYAALNADTGSRLSHLALRWTILTMVR 240 Query: 235 TKELRSMLWKNVDFENR---IITIDASVMKGRKIHVVPMSDQVVELLTTLSSI------- 284 T E R W + + I A MK R H+VP+ Q V LL + + Sbjct: 241 TTETRHAQWSEFEGLGGPEPLWRIPAERMKMRVEHLVPLPPQAVALLREIKELNVYGKYG 300 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADA 343 + +++F ++ I N +L++++++G + HGFR ST++NE + D Sbjct: 301 NERFGQYLFPVIGNQGDTISSNRMLVLLQRLGVGDKATVHGFRSIASTVLNETGLFKPDW 360 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 IE+QLAH GG VR +YN A+YL RR+M++WWAD+LD+ Sbjct: 361 IELQLAHVPGG-VRAVYNAARYLSHRRQMLEWWADYLDK 398 >UniRef50_C6RSU9 Phage integrase family protein n=3 Tax=Acinetobacter RepID=C6RSU9_ACIRA Length = 426 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 118/405 (29%), Positives = 197/405 (48%), Gaps = 27/405 (6%) Query: 2 LTVKQIEA----AKPK-----EKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKIL 50 LT +I+A K +K RL DG GL L + +G +W+ Y K + Sbjct: 8 LTDSKIKAFLRDIKSNNPNGLQKDIRLSDGAGLNLLIRKNGTVMWRFDYTRPVSKKRNTM 67 Query: 51 TVGKYPLMTLQEARDKAWTARKDISVGIDPV------KAKKASSNNNSFSAIYKEWYEHK 104 TVG YP M+L +AR+ R ++ G DP + K+ +F ++ + + Sbjct: 68 TVGNYPAMSLAKAREYRDQFRALLAEGKDPQVEKQGVEEKERLKQQATFKSVAELY--KS 125 Query: 105 KQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 KQ + +F+ + +G + I DI P L +VI + E++G +E A + R + Sbjct: 126 KQRLAEATVKRNDGIFEK-LYRDVGNMPISDITPRDLAKVIEKDENKGHIESAMRIRSKA 184 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIV-SL 222 +VFR+A+ G + + A DLA + K ++ L + + +V Sbjct: 185 SQVFRFAVKMGLCERDVAQDLAGTITQREKNHYSALTDPFDFACLLFDIDHYESQLVHVK 244 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVM--KGRKIHVVPMSDQVVELLTT 280 +A ++ +R ELR+ W +++FE + S K H+VP+S Q + +L Sbjct: 245 LALQLAPLVFVRIGELRNAKWSDINFETATWSYTPSKTSAKTGLDHIVPLSTQAIAILKE 304 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNE-HE 338 + T S+FVF R+DK +PI + ++ + ++++GY + +GHGFR T+++E E Sbjct: 305 ALNFT-NNSDFVFPSRSDKHRPISDMSINMALRRMGYGKEDMTGHGFRAIARTLLDEVLE 363 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +P D IE QLAH YN ++LDKRR MMQ W+D+ DE Sbjct: 364 FPLDIIEQQLAHQVRDMHGRAYNRTKHLDKRRVMMQRWSDYCDEL 408 >UniRef50_Q8W6M6 Putative uncharacterized protein orf1 n=1 Tax=Sinorhizobium phage PBC5 RepID=Q8W6M6_9CAUD Length = 433 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 136/395 (34%), Positives = 209/395 (52%), Gaps = 22/395 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT KQI+ AK +K Y+L DG GL L+V +G K W+LRY+ DGKEK L +G YP ++L Sbjct: 4 LTDKQIKNAKKADKDYKLADGGGLNLFVLSTGTKSWRLRYRFDGKEKTLVIGNYPDVSLA 63 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR + A++ + G DP KK ++F + +EW++ +K W +A++ Sbjct: 64 DARGEREAAKETLKSGRDPNVVKKIEKAIGKQQAADTFEVLAREWHKLQKPTWVEKHASD 123 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +D+ PIIG + I+DI+ +L V+R E R A E A + R+R +F Y I +G Sbjct: 124 VLDSLVNDVFPIIGQMPIRDIDAPTVLGVLRLVEQRDAKETARRIRQRISAIFVYGIASG 183 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA +PA + AM +K P + D+ A V+ + ++L TA+R Sbjct: 184 RASEDPAAVVRGAMAPMKKGRQPAITNLDKAREMLVATWKTPSHPVTKLGLRLLTLTAVR 243 Query: 235 TKELRSMLW---KNVDFENRIITIDASVMK--------GRKIHVVPMSDQVVELLTTLSS 283 L S W VD + + I A+ MK + H++P+S + +E +T L S Sbjct: 244 PGTLISTPWTELDEVDESDPVWVIPAARMKLLLQHKDDETRDHLIPLSKEAMETITVLRS 303 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD- 342 +T FV KP+ ENA+ ++ + GY HGFR FST+MNE +PAD Sbjct: 304 LTG-RGPFVLPNGRHAHKPMSENALGYLLNRSGYHHKHVPHGFRSTFSTVMNE-RYPADR 361 Query: 343 -AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWW 376 I++ LAH V G YN A++L++R+E+ Q W Sbjct: 362 QVIDLMLAHTPKDKVEGAYNRAEHLERRKELAQIW 396 >UniRef50_B1Y106 Integrase family protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y106_LEPCP Length = 429 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 120/406 (29%), Positives = 190/406 (46%), Gaps = 27/406 (6%) Query: 5 KQIEAAKPKEKP-YRLLDGNGLYLY-VPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQE 62 +++A +KP R+ DG GLYL + G W+L Y +GK K L++G YP L Sbjct: 14 AELKAIVDGKKPARRIGDGGGLYLLPLVKGGAHGWRLDYTFNGKRKTLSLGTYPDTGLSL 73 Query: 63 ARDKAWTARKDISVGIDPVKAKKASSNNN----------------------SFSAIYKEW 100 AR KA AR ++ G DP + +K S A+ +W Sbjct: 74 ARKKAAEARTLVAEGTDPSEHRKGVKEERERQHLAGQEAAQRAAAGLAEPGSLEAVAADW 133 Query: 101 YEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKA 160 +H+ W+ G +A + P +G + +I P ++ ++R E GA E A + Sbjct: 134 LQHRAGAWTEGTRHNIAGSLKRYVFPTLGRRPVGEIAPGEIRTCVQRIEASGAAETAGRV 193 Query: 161 RRRCGEVFRYAIVTGRAKYNPAPDLADA--MKGYRKKNFPFLPADQIPAFNKALATFSGS 218 +R ++RYA+ +P L + + K+ P + A + PAF + LA + G Sbjct: 194 FQRLRALYRYAVAHELVAADPTYPLKPSEIFRPRDTKHRPAMSAQEAPAFLRKLADYGGD 253 Query: 219 IVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELL 278 A +L TA+R ELR+ W +D + I A+ MK + H+VP+S Q + +L Sbjct: 254 PTVRNALLLLVLTAVRPGELRAAEWTEIDEAAALWRIPAAHMKMKAEHLVPLSVQALAVL 313 Query: 279 TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 + ++T + +F +P EN + + ++GY+G + HG R FST NE Sbjct: 314 EEMRALTGTQA-LIFPSPFYPGRPFSENTMNSALARMGYKGEATAHGMRTLFSTSANEAG 372 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 D IE QLAH VRG YN A+Y+ +RR +M WW + +D Sbjct: 373 HRGDVIERQLAHEERDDVRGAYNRAEYMAERRRLMTWWGERVDSMR 418 >UniRef50_Q0C1T8 Site-specific recombinase, phage integrase family n=2 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1T8_HYPNA Length = 409 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 120/385 (31%), Positives = 192/385 (49%), Gaps = 10/385 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I + KP KP R DG L++ V +G K+W+ YK DGK+K++ +G YP ++L Sbjct: 17 LTDLKIRSLKPDGKPRRYTDGGNLFIEVRPNGSKLWRFAYKFDGKQKLMALGTYPEISLA 76 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR+K AR + GIDP++ K + ++FSAI E + ++ G Sbjct: 77 RAREKRAEARALLIEGIDPMQQAKVNKLERQALTEHTFSAIAAELLDKNRREGLAGATLS 136 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 +G L + I+P +L +R+ E G E A + R +VFRYA+ T Sbjct: 137 KKSWLVGIANADLGDLPVTQIKPTHVLVPLRKVESEGNYETARRLRAVISQVFRYAVATA 196 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA+++P L A+ + + P + + +++ + G+I + +++ R Sbjct: 197 RAEHDPTAGLRGALIAPKVTHRPAIVDREKFAGLIRSIWAYDGAIETKAGLQLMALLYPR 256 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W D R TI A+ K R+ H P+S VE+L L ++T +V Sbjct: 257 PGELRLSTWGEFDLRKRTWTIPAARTKMRREHKKPLSGAAVEILKRLHAVTGHE-PYVLV 315 Query: 295 GRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 + + KPI EN + ++++GY + + HGFR S+++NE W DAIE +LAH Sbjct: 316 SQLSRGKPISENTLNGSLRRLGYAKEEMTSHGFRASASSLLNESGKWHPDAIEAELAHMG 375 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWA 377 +R Y+ A Y D+R EM WWA Sbjct: 376 ADQIRKAYHRATYWDQRVEMADWWA 400 >UniRef50_A1W8P6 Phage integrase family protein n=4 Tax=Comamonadaceae RepID=A1W8P6_ACISJ Length = 413 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 131/402 (32%), Positives = 201/402 (50%), Gaps = 19/402 (4%) Query: 1 MLTVKQIEAA--KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT KQ + A P +K R D GLYL V SG K W + DGKE + +G YP Sbjct: 1 MLTDKQCKNAICPPDKKRARFTDSLGLYLEVSPSGSKRWFWKTYFDGKEGRMALGSYPTQ 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGY 112 +L +AR A+ + G+DPV+ +K ++F AI EW+ + WS + Sbjct: 61 SLADARKARDIAKLKKADGVDPVQERKLEKLKGSRSGGDTFQAIALEWHGRQVDQWSDTH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + D+ P IG ++ IEPM+LL +++ E+RGAME A++A C +++RY + Sbjct: 121 AGRTKRQLERDLFPWIGDRQMTSIEPMELLATLQKIEERGAMETADRALMLCRQIWRYWL 180 Query: 173 VT-GRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRY 230 T G + + L + + YR NFP + + +A+ + GS A + Sbjct: 181 PTAGNTQRDITVGLKNRLTPYRGTNFPAIVEPKRFGELLRAMHVYKGSHTVRTALLLAPL 240 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQVVELLTTLSS 283 R LR+M W VD + + TI + MK + H VP+ Q VELL L + Sbjct: 241 LYQRPGNLRAMEWAEVDLDAALWTIPSMKMKRTKTEKEQGEPHAVPLPTQAVELLRNLQA 300 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPAD 342 +T +VF G+ D ++P+ +N+V + +G+ +S HGFR T++ + + Sbjct: 301 LTG-RGTYVFPGQRDHERPMSDNSVRSALYSLGFGTEQSWHGFRASARTMLVDQLDLDPL 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 AIE LAHA S YN QYL KR + +Q WA++LD Sbjct: 360 AIEANLAHAVKDSNGRSYNRTQYLKKRYDQVQMWANYLDRLR 401 >UniRef50_P39347 Putative prophage P4 integrase n=97 Tax=Enterobacteriaceae RepID=INTB_ECOLI Length = 396 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 200/381 (52%), Gaps = 22/381 (5%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAK 84 ++L V +G K W+L+Y+ +GK+K+L +G YP +TL +AR + ARK ++ G+DP K Sbjct: 1 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 60 Query: 85 K----ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQ 140 K S +F + EW+ K+ WS +A + K +D++ +G I +++ Sbjct: 61 KNDKVEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVLKSLEDNLFAALGERNIAELKTRD 119 Query: 141 LLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFL 200 LL I+ E G +E A + ++R + RYA+ +G YNPA ++A A+ +++ P L Sbjct: 120 LLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPAL 179 Query: 201 PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASV- 259 +IP + +++G ++ A ++ +R+ ELR W +DFE I TI Sbjct: 180 ELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPERE 239 Query: 260 -----------MKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAV 308 K R H+VP+S Q + +L + + +F G +D KP+ EN V Sbjct: 240 PIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGA-HDLIFIGDHDSHKPMSENTV 298 Query: 309 LLVIKQIGYEGL--ESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNH-AQ 364 ++ +GY+ GHGFR + + E W DA+E Q++H SVR Y H A+ Sbjct: 299 NSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAE 358 Query: 365 YLDKRREMMQWWADWLDEKVE 385 +L++RR M+QWWAD+LD E Sbjct: 359 HLEERRLMLQWWADFLDVNRE 379 >UniRef50_UPI0000E0FEDC DNA integration/recombination/inversion protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0FEDC Length = 418 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 118/401 (29%), Positives = 194/401 (48%), Gaps = 22/401 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT I+ AKPK K Y++ D GL+L + SG K W+ ++I+ T+GKYP ++L+ Sbjct: 3 LTDTAIKNAKPKTKAYKMSDSGGLFLLIKPSGYKSWKYDFRINSTRGSYTIGKYPDISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS-----NNNSFSAIYKEWYEHKKQVWSVGYATEL 116 +AR + AR+ ++ GI+P + K FS +W KQV + +L Sbjct: 63 QARQEHLQARELVAQGINPKQIKTQRKVNDELQTKRFSYYMNQWL--NKQVLAESTFKDL 120 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D +++P + I + LL+++ DRGA E A + VF ++ G Sbjct: 121 KQRIDKNLIPFLDKKNINEYTTADLLKIMLSISDRGAKETAIRLANVARRVFNEVLILGI 180 Query: 177 AKYNPAPDLADAMKGYRKKNFP----FLPADQIPAFNKALA--TFSGSIVSLIATKVLRY 230 + NPA LA+ + K+ +++ + + A K++ Sbjct: 181 IETNPAQGLAELLPKPDKRIDNNFGHITSTEELKILLNQIDAPSARQDFAVTQALKLMPL 240 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 LR +R + W+ ++F+ II + A+ +K K VP++ Q V +L + +T + Sbjct: 241 VFLRPYNIRFLKWEYINFDENIIKLPATELKNNKPLDVPLATQAVTILKQMQQVTGHKT- 299 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYE--------GLESGHGFRHEFSTIMNEHEWPAD 342 +VF K P+ EN +K+I G + HGFRH ST++NE + AD Sbjct: 300 YVFVTAQGKDTPLSENTTTNALKRIINPTTNKPYGTGYMTSHGFRHTASTMLNELGYEAD 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 IE+QLAH N +R YN A++++KR MMQ WAD+LD Sbjct: 360 IIELQLAHTNKDRIRATYNKAKWMNKRIAMMQDWADYLDGI 400 >UniRef50_Q3SF40 Putative phage integrase n=5 Tax=Proteobacteria RepID=Q3SF40_THIDA Length = 440 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 114/422 (27%), Positives = 192/422 (45%), Gaps = 41/422 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID-GKEKILTVGKYPLMTL 60 L+ ++ KP ++ + DG GLY+ + +GK+ W L+Y+I GK++ + +G YP +L Sbjct: 3 LSDSKLRTLKPADRVFSESDGGGLYIEIMPTGKRRWGLKYRIPTGKQETIRLGDYPAYSL 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKK----------------------------------- 85 +AR + G+ P+ K+ Sbjct: 63 ADARTWRDDCKALAGRGLSPMALKRGDPIPEDAAPAAKELAQFFIRNWCMKAVEKAKAKE 122 Query: 86 -ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEV 144 + ++ A WY + + + ++ D D +P IG +I D+ +L + Sbjct: 123 AEAKAADTVEAFAWRWYAEIVEPAN-SNPRNIKRILDKDAIPAIGSKQIADVTVTDILAI 181 Query: 145 IRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQ 204 + ++RGA + A + R +F YAI + +NPA + K L ++ Sbjct: 182 TDKIKNRGADQMALQTRNVLKRLFAYAIAREKTTFNPAAAIEAKFIAQAKSRDVALSPEE 241 Query: 205 IPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRK 264 I +A+ S +A +L +R EL W+ +D E I MK K Sbjct: 242 IGRLLRAIYQSSMKRAHKLALHLLILCMVRKSELTEAKWEELDLEKAEWAIPGERMKKDK 301 Query: 265 IHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESG 323 H+VP+S Q V + L + SE+VF R+ KKPI NA+ V++ + + Sbjct: 302 PHLVPLSRQAVAMFEELKGLA-SGSEWVFPSRSSLKKPIAHNALNTVVRALEADVRDFVI 360 Query: 324 HGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 H FR ST ++E + +D IE LAH G +RG+YN AQY D+RR+M+QWWAD++D + Sbjct: 361 HDFRRTASTHLHEAGFNSDWIEKALAHETKG-IRGVYNRAQYADQRRDMLQWWADFVDSQ 419 Query: 384 VE 385 ++ Sbjct: 420 IQ 421 >UniRef50_C6ALW6 Prophage integrase n=2 Tax=Pasteurellaceae RepID=C6ALW6_AGGAN Length = 413 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 105/402 (26%), Positives = 175/402 (43%), Gaps = 20/402 (4%) Query: 2 LTVKQIEAAK--PKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPL 57 LT Q+E K P K L DG GL+L + +G K W+ RY I +G +P Sbjct: 8 LTNTQVERVKYTPNGKNV-LNDGKGLFLEIYPTGAKKWRFRYERPITKARTKFNIGDHPS 66 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVG 111 +TL +AR K ++ GIDP + K N+F + W E+K++ Sbjct: 67 ITLAQARVKRDEYNALLAQGIDPQEHAKQKHQALQFQLENTFLKWAERWKENKEKKVKAD 126 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFED----RGAME---RANKARRRC 164 + + + +L +G + I + P L++ + E R + R Sbjct: 127 TLRKDWRRIEMYLLESLGQIPIDKVLPPLLIQALTPLEAMKDRRTGTADSDTLKRVIRLA 186 Query: 165 GEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 E+ YA+ G +NP + D ++ P + +++P ++ + Sbjct: 187 NEILTYAMNAGAIPFNPCLSVKDIYSFAPAESHPHIEPEELPLLLTDISESKAQPRTKDL 246 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 T +R E + W D EN++ TI A MK + H VP+S Q + LL L S Sbjct: 247 ILFQLLTMVRPSEASNAEWAEFDLENKVWTIPAEKMKMKHPHKVPLSSQTIRLLQHLQSQ 306 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWP-ADA 343 T FVFA RN +P+ +V + +GY+G + HG R T + E + + Sbjct: 307 TGHK-RFVFASRNKINEPMNSQSVNKALVDMGYKGKQDAHGLRSIGRTYIGEKQMDGYEV 365 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +E+ +AH G S IY+ A + ++R +MQ W D++++ E Sbjct: 366 LEMCIAHKVGTSTGKIYDKADFFEQRIPIMQAWGDFVEQCAE 407 >UniRef50_A9I0E1 Phage-related integrase n=5 Tax=Burkholderiales RepID=A9I0E1_BORPD Length = 536 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 118/409 (28%), Positives = 204/409 (49%), Gaps = 28/409 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 +L+ QI+AAKP +K Y L DG+ LYL V ++G K W RY D K L +G YP +TL Sbjct: 102 LLSETQIKAAKPGQKEYMLNDGDNLYLRVRITG-KAWIYRYMKDSKPIKLGMGPYPEVTL 160 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQ--VWSVGY 112 +AR KA+ A + G+DP + ++ + ++F + + W+ K+ WS GY Sbjct: 161 AQARTKAYEANSQRANGLDPKEVREQLAEQTRIARLHTFELLARAWHASAKKDREWSEGY 220 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A ++ + + I P +G I+ I P +++ + R +DRG +E A + R V++YA+ Sbjct: 221 AQKVIRHLEIHIFPWVGHKPIEMILPTEIVRCLHRPKDRGNLETAQRVREAVQHVYQYAV 280 Query: 173 VTGRAK--YNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLR 229 G + N + R ++F + Q+ + + ++ G ++ A ++ Sbjct: 281 DVGALEPSKNFVNKNTGGLPPPRSRHFAAITEPAQLGQLLRDIRSYHGQFITRCALRLAP 340 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRK---------IHVVPMSDQVVELLTT 280 R ++R W+++ E + MK R+ H+VP+ Q +E+L Sbjct: 341 MMFQRPGQIRLADWEDISLEVELWRCPPEKMKMREWQKRDSRTPAHIVPLPRQALEILRE 400 Query: 281 LSSITKPVSEFVFAG---RNDKKKPICENAVLLVIKQIGY--EGLESGHGFRHEFSTIMN 335 L +T P VF R++K + I +N + ++ +GY + +GHGFR T++ Sbjct: 401 LHPLTGPTGP-VFRSMSRRSEKSRYISDNTINAALRTMGYDTKEEITGHGFRATARTMIR 459 Query: 336 EH-EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 EH W D IE LAH + + Y+ A ++ +R+ M+Q WAD+LDE Sbjct: 460 EHLGWEPDVIERHLAHTSDEELGSSYDRAAFIAQRKAMVQQWADFLDEL 508 >UniRef50_D0SZI9 Integrase n=14 Tax=cellular organisms RepID=D0SZI9_ACILW Length = 401 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 122/401 (30%), Positives = 196/401 (48%), Gaps = 26/401 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLMT 59 LT ++ AK KEK Y L D +GL L V +G+K W RY + G K + +G+YP+M+ Sbjct: 3 LTEIKVRQAKSKEKIYFLADDDGLSLKVEPNGRKSWSYRYSLAGTNKRPRMKLGEYPVMS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVG-----YAT 114 L+EAR + + + KK +F I +EW E K + Sbjct: 63 LKEARSVRDEYK--FNNYENKPLHKKYIK---TFQDICEEWLEFKIKNSFEDEPRCGVIQ 117 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 K D D+ P IG + +I+ L+++I++ E R E KA +++ YA+ Sbjct: 118 LAKKCLDQDVYPNIGLMPFIEIKRYDLVKIIKKIESRNVKEPVKKAYSYLNQIYDYAVAM 177 Query: 175 GRAKYNPAPDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 G +YN A L + + KKN+P L +D++ F L + + A YT + Sbjct: 178 GYCEYNIAHGLHKILVNNKIKKNYPHLNSDELSNFLAKLNQINTDPIIKKALLFKLYTGV 237 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRK----------IHVVPMSDQVVELLTTLSS 283 R EL + D + +I I A +K + VP+SDQ +E++ + Sbjct: 238 RGGELLLCEPHHFDLDKKIWKIPALHIKQYRRKVILGHDIPDFFVPLSDQALEVVKSALV 297 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPA 341 + ++VF+ + KPI N + L+I+++GY + + HG R FSTI+NE + + Sbjct: 298 WS-HGEKYVFSSPRNNNKPIHFNTLNLIIRKMGYTKNELTSHGLRSTFSTILNESGLFQS 356 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + IE QL+H + R YNHA+Y ++R EMMQWW D++D Sbjct: 357 NWIEAQLSHTDKNKTRASYNHAEYFNQRMEMMQWWGDFIDS 397 >UniRef50_B9NUX0 Site-specific recombinase, phage integrase family n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NUX0_9RHOB Length = 404 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 122/391 (31%), Positives = 193/391 (49%), Gaps = 10/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ +P + Y+ D +GLY+ V +G K W L Y+ GK+K+++ G YPL++L+ Sbjct: 3 LTDIALKNMQPSGRAYKRSDAHGLYILVKPNGSKHWHLHYRFLGKQKVMSYGPYPLISLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 EAR+K RK + GIDP+ KK F + E E + + Sbjct: 63 EAREKRDRDRKFLIEGIDPMVVKKERKLASERAQRGRFDILAAELLEKNRVEGRAEQTLK 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + L + +I P +L V+++ E G +E A++ R GEVFRYAI G Sbjct: 123 KKAWLVEMANKDLAKLAVMEITPSDVLAVLKKQEKAGNLETASRLRTTIGEVFRYAIACG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + +P L A+ R ++ + +++ ++ +SG V + ++L +R Sbjct: 183 LTENDPTIPLKGALVQKRPRSRSAITNPERLGELLCSIENYSGYRVVALGLRLLALLHVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W+ D E TI A MK R+ HV P+ Q +++L L I+ P V Sbjct: 243 PGELRFAKWEEFDLEAGKWTIPAERMKMRQPHVAPLPTQAIDILRELQRISHPDG-MVLP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 + + P+ EN ++ +GY + + HGFR FST+ NE W DAIE LAH + Sbjct: 302 SQRRRIDPLSENTFNKALRMMGYSKEEMTAHGFRATFSTLANESGEWNPDAIERALAHVD 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 VR YN A + ++R EM QWWAD L++ Sbjct: 362 SNEVRRAYNRAAFWEERVEMAQWWADGLEKL 392 >UniRef50_A1AE42 Integrase-like protein n=11 Tax=root RepID=A1AE42_ECOK1 Length = 418 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 113/396 (28%), Positives = 192/396 (48%), Gaps = 18/396 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL--M 58 MLT +++ KP++K Y++ D +GLY+ V SG ++ Y+I+G+ + L +G+Y + Sbjct: 1 MLTDTKLKNLKPQDKLYKVSDRDGLYVAVLTSGTVSFRYDYRINGRRETLVIGQYGRDGI 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAK----KASSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 +L EAR++ A+K + G P AK K +F+ + +H + Sbjct: 61 SLAEAREELIAAKKLLKAGQSPAAAKRDGIKKIRGAETFAVHTDSYMKHVI--LADSTRA 118 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + D DILP++G + +I + ++ R +RG A +AR V+R+A Sbjct: 119 MKQAVIDRDILPVLGNKMMAEITTSMVRDLCDRIVERGGRATAVQAREIISSVYRHANDR 178 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 G +NPA D+ + K L ++I F + L +A K++ T +R Sbjct: 179 GHGLFNPAADIKPSSIAIFKPRERTLTPEEIGLFFRTLDAIGAMGTMKMALKLVLITMVR 238 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E + W +DF+ TI + MKG + HV+ + Q ++L L SE++ Sbjct: 239 KGEFTNATWDEIDFKKWTWTIPSDRMKGSRAHVIYLPKQAQDILVGLQMCAG-GSEYLVP 297 Query: 295 GRNDKKKPICENAVLLVIKQ----IGYEG----LESGHGFRHEFSTIMNEHEWPADAIEV 346 GR + +KP+ A+ +I + I +G + H R ST+++E +P+D IE Sbjct: 298 GRYNFRKPLSNAALNSLIDRTVKIINEDGEHIQDFTVHDMRRTASTLLHEAGYPSDWIEK 357 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH G VR +YN A+Y +R M+Q WAD +D Sbjct: 358 ALAHEQKG-VRAVYNKAEYARQRAYMLQQWADMIDS 392 >UniRef50_C8NCE3 Phage integrase family site-specific recombinase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCE3_9GAMM Length = 401 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 128/396 (32%), Positives = 199/396 (50%), Gaps = 16/396 (4%) Query: 2 LTVKQIEAAKPKEKPYR-LLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLM 58 LT Q A +K R DG GL L V GKK W+L Y++ G K++ ++ G YP + Sbjct: 3 LTETQCRTAAAPDKNVRKYFDGGGLCLQVTSDGKKYWRLYYRMPGSKKQQTVSFGVYPKV 62 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKK--QVWSV 110 +L++AR + + I+ GIDP A K N+F+ + K W EH+ + W Sbjct: 63 SLKQARQRRDEVKLLIARGIDPKLAAKQLRQDRTVALENTFADVAKRWLEHRAEVKKWGK 122 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 + M + + P IG + +IEP Q+L V++ + G +E ++K +VFRY Sbjct: 123 QHQRATRSMLERYMYPRIGDYPVTEIEPTQILRVLQELQAAGKIETSHKLLSATTQVFRY 182 Query: 171 A-IVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVL 228 A I KYNPA DL++ + + F + +I AL ++GS + ++ Sbjct: 183 AMITIRICKYNPAADLSELLVTGKSVPFRHITDPGEIGRLLVALDEYTGSPQARGLARLH 242 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKI-HVVPMSDQVVELLTTLSSITKP 287 R E+R M W +DFE R+ RK + VP S Q E++ L +T Sbjct: 243 PLIFTRPTEIRLMRWDEIDFEQRLWRRSDDETVRRKNVNAVPFSRQAWEIIAGLRLVTG- 301 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQ 347 +++VF + + KP A V+K IGY HG+RH ST+++ ++ + +E Q Sbjct: 302 RTDYVFCNIH-RNKPFSAGAEGKVLKSIGYHEKIVPHGWRHTASTLLHNQDYDSIWVEKQ 360 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 L H + VRG YNHA YL++RR+M+Q WAD+LD Sbjct: 361 LGHTDKNEVRGTYNHADYLEQRRKMLQEWADYLDML 396 >UniRef50_A5I9N5 Integrase, phage related n=12 Tax=Legionella RepID=A5I9N5_LEGPC Length = 407 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 107/396 (27%), Positives = 176/396 (44%), Gaps = 20/396 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 T I K KEK Y +G G + + + K W RYKI+G T+G YP M+L Sbjct: 4 FTDTYIRNLKAKEKRYEEFEGGGFGIRITPNNVKTWIYRYKINGVTTKFTLGHYPAMSLS 63 Query: 62 EARDKAWTARKDISVGIDPVK--AKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE---L 116 A+ + + G+DP + +NN+ + WY + + + Sbjct: 64 NAKRRFLELSQMRREGVDPKTVIQAQEEQDNNTVDKLALNWYTNYI----EKHVKRPLVI 119 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D+DI+P++G ++ D++ + + + RGA AN+ ++F YA+ G Sbjct: 120 KRQIDNDIIPLLGKKKLDDVQTKDISDALDTIVKRGARILANRTLSSIKQMFNYAVSRGY 179 Query: 177 AKYNPAPDLA-DAMKGYRKKNFPFLPADQIPAFNKALAT--FSGSIVSLIATKVLRYTAL 233 ++NPA ++ + G K L ++I A L + S + IA K+L T + Sbjct: 180 TQFNPASNIRSRDIGGIEKPKERVLTLEEIKALWLFLDSDLTQMSTQTRIAIKLLLLTGV 239 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 RT ELR W +DFE + TI A K IH V +S L L ++ S++V Sbjct: 240 RTVELRLASWHEIDFEASLWTIPALHSKASIIHKVHLSKLAKSLFLQLKPLSH--SDYVL 297 Query: 294 AGRNDKKKPICENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNE-HEWPADAIEVQLA 349 G + PI ENA+ IK+I + + H R F+T + E + IE L Sbjct: 298 TGVDGFH-PITENALPRAIKRIQEKLGIPDWTAHDLRRTFATQLGETLQIDPVVIEKCLG 356 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 H + YN + L +RRE ++ WA ++ ++ Sbjct: 357 HKMP-RIMATYNRNEMLPQRREALERWAVCIENMMQ 391 >UniRef50_D0SUB2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SUB2_ACILW Length = 396 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 124/382 (32%), Positives = 199/382 (52%), Gaps = 12/382 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + A+PK+K YRL D +GL L + G+K W +R + G+ K ++G YP ++L+ Sbjct: 19 LTDTECRKAQPKDKQYRLSDLHGLSLIITTKGQKYWNVRVTVHGERKSESLGPYPDLSLK 78 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF- 120 +AR+ A+ + S + K F + ++W+ ++K+ WS + + + Sbjct: 79 KARELAYELKHRYSRSVLHEDLK------PYFEEVAEDWFNNQKETWSSKHISNVRASLD 132 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + I + I I+ ++L++I++ E RG++E A + RCG V +YAI G N Sbjct: 133 ELYI--ALANKRINQIQAPEILQIIKKIEARGSLEIAKRTLSRCGMVMKYAIAHGYRYDN 190 Query: 181 PAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRS 240 PA DL A+K R KN L A ++P F + + + + A ++ T +R EL Sbjct: 191 PAGDLVYALKNKRVKNLASLSASEMPEFLRRIKAYPADAQTHHAIVLIMLTGVRVSELLQ 250 Query: 241 MLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKK 300 W+ D E R I MK R H VP++D ++ L L E +F R + K Sbjct: 251 ARWEEFDLEGRKWDIPEERMKNRLSHRVPLTDMMIAELQALRL--THNQELLFPHRLNNK 308 Query: 301 KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGI 359 +P+ ++L VIK+ GY G + HGFR FST++NE + DAIE QLAH +R Sbjct: 309 EPMRSESILAVIKRSGYAGRMTTHGFRSLFSTVVNESNLFNPDAIERQLAHVPQNRIRSA 368 Query: 360 YNHAQYLDKRREMMQWWADWLD 381 YN AQY D+R +MQW+ + ++ Sbjct: 369 YNRAQYWDERVRLMQWYGEQVE 390 >UniRef50_D2MI75 Phage integrase family protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI75_9BACT Length = 398 Score = 363 bits (933), Expect = 6e-99, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 174/387 (44%), Gaps = 13/387 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ A +P DG L+L V G K W R+ I GK + +G +P+++LQ Sbjct: 4 LTFGKLRAL---NEPGLYGDGGTLFLKVSPGGSKSWVQRFTIKGKRHDVGLGGWPVVSLQ 60 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN---NSFSAIYKEWYEHKKQVWSV-GYATELA 117 EAR++A+ R+ ++ G DP+ K+ +S +F A+ +++YE W + Sbjct: 61 EARERAFDNRRAVAHGRDPLAEKQKASKAAAVPTFRAVARKYYEENLPRWKAGRHTDRWL 120 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ + P+ G + + + +L ++ E A K R R + + G Sbjct: 121 QVVEKYAFPVFGDVPVDRVGREDVLRMLTPIWTA-KPEYARKLRHRVRLILDWCQAHGYV 179 Query: 178 KYNPA---PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 N A A K++ LP ++ + S+ + + + L TA+R Sbjct: 180 HTNIAGEQIGGALPSMPSVKEHHRSLPYAEVSQALDLIEASGASLSAKLCLRFLILTAVR 239 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E R+ W+ +++E + TI A MK + H VP+S + +++L S + S +F Sbjct: 240 PGEARNATWEEINWETKTWTIPAGKMKAKAEHRVPLSREAMQVLERASRVRGE-SPLIFP 298 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPA-DAIEVQLAHANG 353 + KP+ + + +++ +G HGFR F T E IE+ LAH+ G Sbjct: 299 SSLKRAKPLSDMTLTKLLRDVGLREKTVPHGFRSSFRTWAGEQTNSPTPVIELCLAHSVG 358 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 ++ Y + L KR+ +MQ W ++ Sbjct: 359 NAIEKAYTRSDLLQKRQRLMQEWGRYV 385 >UniRef50_D0J426 Phage integrase n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J426_COMTE Length = 416 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 130/403 (32%), Positives = 197/403 (48%), Gaps = 19/403 (4%) Query: 1 MLTVKQIEAAK--PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 MLT Q A P K R D GLYL V +G + W +Y+ DGKE L +G+YP + Sbjct: 1 MLTDAQCRNAVCSPGAKRERFSDAGGLYLEVSPAGSRRWFWKYRKDGKEGRLALGRYPEV 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGY 112 +L AR AR S GIDP KA+K ++F A+ EWYE + WS G+ Sbjct: 61 SLTAARKARDAARLQKSEGIDPAKARKLEKLVNPTGVADTFKAVALEWYEKQVPRWSPGH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + + + D+ P IG E+ I+PM+LL V+++ E RGA+E A++A +V+RY + Sbjct: 121 AERMHRQLERDLFPWIGEREMAQIQPMELLAVLQKVEARGAVETADRALMLARQVWRYWL 180 Query: 173 VT-GRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRY 230 T + + L + YR NFP + + +A+ + G A + Sbjct: 181 PTASNTQRDITEGLKARLTPYRGTNFPAIVEPQRFGELLRAMYAYKGGPFVRTALLLAPL 240 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMK-------GRKIHVVPMSDQVVELLTTLSS 283 R LR M W +D + + I ++ MK + HVVP+ Q V +L L Sbjct: 241 LYQRPGNLRMMEWAELDLDAALWKIPSAKMKRSVQEKENGEPHVVPLPKQAVAMLRELLP 300 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPAD 342 ++ +VF G+ D +P+ +N+V + +G +S HGFR T++ + + Sbjct: 301 LSG-RGRYVFPGQRDHDRPMSDNSVRTALYSLGVGEEQSWHGFRASARTMLVDQLDLDPL 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 AIE LAHA + YN +YL KR + +Q WAD+LD E Sbjct: 360 AIEANLAHAVKDANGRSYNRTKYLAKRFDQVQQWADYLDRLRE 402 >UniRef50_A0EVM1 Integrase n=77 Tax=cellular organisms RepID=A0EVM1_ECOLX Length = 396 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 105/396 (26%), Positives = 183/396 (46%), Gaps = 18/396 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL--M 58 MLT ++ KPKEK Y++ D +GLY+ V +G ++ Y I+G+++ +T G+Y + + Sbjct: 1 MLTDTRLRHLKPKEKLYKVNDRDGLYVAVTPAGTISFRYNYSINGRQETVTFGRYGVGGI 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSN----NNSFSAIYKEWYEHKKQVWSVGYAT 114 TL EAR++ A+K ++ G P + K +F A ++W + + Sbjct: 61 TLAEARERLNEAKKMVASGRSPAREKARDKARIKDAETFGAWAEKWLRGYQM--AESTRD 118 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ ++ ++ +I L + +RGA A AR +V+R+AI Sbjct: 119 MRRSVYQRELKSKFAQQKLTEITHEDLRALTDNIVERGAPATAVHAREIVLQVYRWAIER 178 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 G+ NP+ + A + L +I + + + A K+L T +R Sbjct: 179 GQKVENPSDLVRPASIAKFEPRDRALTPVEIGLMYRYMERVGTTPSIRAAVKLLLLTMVR 238 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 EL + WK ++F + TI MK R H+V +S Q ++++ L + S+F+ Sbjct: 239 KSELTNATWKEINFSEALWTIPKERMKRRNPHLVFLSRQAMDIMIALKTFAG-SSDFILP 297 Query: 295 GRNDKKKPICENAVLLVI--------KQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEV 346 R D P+ + V+ K+ H R ST+++E + D IE Sbjct: 298 SRYDSDAPMSSATLNRVLTLTYRLAQKEGDLLPKFGPHDLRRTASTLLHEAGYNTDWIEK 357 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH G VR +YN A+Y ++R EM+Q WA+ +DE Sbjct: 358 CLAHEQKG-VRAVYNKAEYREQRAEMLQDWANMIDE 392 >UniRef50_A3ZAX6 Prophage CP4-like integrase n=2 Tax=Synechococcus RepID=A3ZAX6_9SYNE Length = 426 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 117/402 (29%), Positives = 193/402 (48%), Gaps = 19/402 (4%) Query: 1 MLTVKQIEAAKPKEKP--YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 ML+ K I+A +P + D +GLYL+V SG K W+ Y+ G + T+G YP + Sbjct: 1 MLSDKAIQALRPDPDRPGTKHHDRDGLYLWVARSGSKTWRKDYRWQGARRTFTIGPYPAV 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSVGY 112 L +AR +A I GIDP +A S++ F I + W+EH WS Y Sbjct: 61 RLADARKQALELNTWIKAGIDPRTQVPTQQRNQAESSSRPFVQIAQAWFEHHSASWSPRY 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLL-EVIRRFEDRGAMERANKARRRCGEVFRYA 171 ++ + + ++P +G L+I+ I + +++ RGA E+A + V +A Sbjct: 121 CRDMREKLNHFVIPALGQLDIEAISRSDIETQLLAPILARGANEQARRCNDVTRRVIEHA 180 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSL----IATKV 227 + + NPA + R ++ + ++P + + F ++ IA ++ Sbjct: 181 VDLELRQDNPAVKARKVIAATRVTHYHRISWVELPELLEVIDRFERQRLAERSSLIALRL 240 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 + T +R ELR W VD E R I A MK R H+VP+S Q L IT Sbjct: 241 MMLTLVRPSELREARWSEVDTEGRQWIIPAERMKTRVRHIVPLSSQARHLFDMQRPITGH 300 Query: 288 VSEFVFAGRNDKK----KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPAD 342 + VF N + + + + ++++++G++G ++ HGFR T E + P Sbjct: 301 T-DLVFHTPNHRGSGELRVMSNGCLSMLLRRMGFQGRQTPHGFRGFGQTNCIEQLKIPRV 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E QLAHA+G SV Y+ A+YL++R +M+Q WAD LD+ Sbjct: 360 VTEKQLAHADGNSVSRAYDWAEYLEERSDMLQRWADLLDQVA 401 >UniRef50_Q1NM52 Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NM52_9DELT Length = 406 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 171/395 (43%), Gaps = 21/395 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q+ +P+E + L DG GL L V SG++ W LRY+ +GK + +T+G+YP M+L Sbjct: 3 LSDAQLRKIRPRESRFELTDGKGLVLLVLPSGRRSWLLRYQFEGKPRRITLGEYPDMSLL 62 Query: 62 EARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 +AR+ + R I G+DP + K A + + S + E+++ + + S Sbjct: 63 QARNASEATRSIIKQGLDPALKRTEEKTAHKTSPTVSDLLTEYWDMELKE-SPSGKER-R 120 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ + D+LP G ++ +I ++ R A N+ + +F +A G Sbjct: 121 RLVEKDVLPPWGKRKVAEITRRDAALLLDTVRAR-APVTGNRLQGVLVRMFNFAAERGVL 179 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALA----TFSGSIVSLIATKVLRYTAL 233 +++P L + L +I ALA VS +A K++ T Sbjct: 180 EHSPLMGLRK---KKEQPRSRVLADKEIKLLWDALALDNTAMDIYRVSKLALKMILLTGQ 236 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E+ M W +D + I A MK ++ H VP+ +E++ + S FVF Sbjct: 237 RPGEVCGMTWDEIDGD--TWNIPAERMKSKEPHNVPLGSMALEIIEQARRYSPRGSTFVF 294 Query: 294 AGRNDKKKPICENAVLLVIKQ----IGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 + K+ PI +++ I + +G + H R T + E E L Sbjct: 295 KSSHFKEGPITPHSLSKAILRHWQEMGVTERFTPHDLRRTLRTRLAEIGVDDVVGERVLG 354 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H G + +YN Y ++R+ + W L E V Sbjct: 355 HKLQG-IMAVYNRHSYDKEKRQALALWERKLREIV 388 >UniRef50_A9VZC1 Integrase family protein n=3 Tax=Alphaproteobacteria RepID=A9VZC1_METEP Length = 412 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 114/390 (29%), Positives = 179/390 (45%), Gaps = 14/390 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q+ A K P R DGNGLYL V SG K W LR + G+ + + +G L+TL Sbjct: 22 LTTVQVRALKV---PGRYADGNGLYLVVEPSGSKRWLLRTIVQGRRRDIGLGGAGLVTLA 78 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN-NSFSAIYKEWYEHKKQVWS-VGYATELAKM 119 EAR+KA RK G DP+ ++ + +F+ ++ +E K W +A + Sbjct: 79 EAREKALAYRKLARDGGDPLAERRKARATVPTFAEAAEQVHEEHKASWKNPKHAAQWITT 138 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAK 178 P +G + IE +L + E A + R+R G V +A G R Sbjct: 139 LRTYANPHLGARRVDQIETPDVLRALSPIW-LTKGETARRVRQRIGTVLDWAKAAGHRTG 197 Query: 179 YNPAPDLAD--AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NP +A +G R ++ LP ++PAF L + + +A + L TA RT Sbjct: 198 DNPVESVAKGLPKQGERDEHHAALPYAEVPAFVTRLQSSDHGEAARLAFEFLILTAARTS 257 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+ W+ +D + T+ A+ MK + H VP+S + +E++ + S F+F GR Sbjct: 258 EVLRAEWREIDEAEALWTVPAARMKAGREHRVPLSKRSLEIVRRAKLLAGD-SAFIFPGR 316 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGS 355 + KP+ L+ ++++ + HGFR F E P + E+ LAH Sbjct: 317 ST-GKPMSNMVFLMALRRMKLT--VTAHGFRSSFRDWAAEATSLPREVAEMALAHTIENR 373 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 V Y L KRREMM+ W+ ++ K + Sbjct: 374 VEAAYRRGDLLAKRREMMEQWSTFVASKPK 403 >UniRef50_Q46Z79 Phage integrase n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46Z79_RALEJ Length = 418 Score = 360 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 134/401 (33%), Positives = 203/401 (50%), Gaps = 19/401 (4%) Query: 2 LTVKQIEAAK-PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKI--LTVGKYPLM 58 L Q AK RL DG GLYL + SG K W+++Y+ G + LT G YP + Sbjct: 8 LADLQCRQAKYSTAGGNRLRDGGGLYLELLPSGAKKWRMKYQRPGSKSENLLTFGDYPAV 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWSVGY 112 L AR++ AR ++VG DP A+ A + N+F A+ +EW +H+ WS Y Sbjct: 68 GLSAARERREEARAQLAVGTDPALARDLAKATVAEAARNTFRAVAEEWLKHRHDTWSASY 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + ++ + D+ P +G I I P LL V R+ E RGA E +A G++F+YAI Sbjct: 128 AQKTKQLLERDLYPDLGQHPIASITPAFLLTVARKIEARGAYEMPRRALVTAGQIFQYAI 187 Query: 173 VTGRAKYNPAPDLADAMKG-YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 TGRA + + + +K K++P + Q+P + + ++G ++ A K+ T Sbjct: 188 GTGRASIDASAGMVAQLKPRPPVKHYPHVADTQLPDLLQRIDRYTGRPETIAAVKLAVLT 247 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKG-------RKIHVVPMSDQVVELLTTLSSI 284 +R ELR W +D E + + MKG HVVP+S Q + LL L Sbjct: 248 FIRGGELRYAEWSELDLEKAEWHVPSGRMKGRLWHKLSGTPHVVPLSRQTIALLEDLKQY 307 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADA 343 T + +F G KP+ A+ V IG++G ++ HG R ST++NE + Sbjct: 308 TGHYA-LLFPGAVSVLKPVTGEAMNKVFHSIGFKGQQTVHGLRGLASTLLNESGLFDPRV 366 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 IE QL+H YNHA+YL +RR +MQWWAD++D++ Sbjct: 367 IEAQLSHKETNKTIAAYNHAKYLPERRRVMQWWADYIDQRA 407 >UniRef50_A3UDD1 Symbiosis island integrase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UDD1_9RHOB Length = 406 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 122/392 (31%), Positives = 195/392 (49%), Gaps = 9/392 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I A KP + YR+ D NGL + V G + W+ RY+ +GK +++ +G+YP ++L+ Sbjct: 3 LTDAKIRALKPADTLYRVSDSNGLSIEVTPKGDRYWRFRYRFNGKAQMMGLGRYPSVSLK 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGYATE 115 +AR K R+ + G++P ++ SF +I E+ ++ + + Sbjct: 63 KARSKRDHYRELLDEGLNPSLERQTRQQELAQLEQSSFGSIATEFLRKRETEGAAPATLK 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + +LP + L IQ+I QLL+V+R E RG A +AR G +FRYAI TG Sbjct: 123 KLRALLRLLLPDLAPLPIQEITAPQLLQVLRATESRGKHVVATEARALAGRIFRYAIATG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTALR 234 R + +P+ L +A+ R K + + + A + T+ G + +L +T +R Sbjct: 183 RCEQDPSYMLREALVTPRVKGYAAIREPEAFGALLARIETYEGDTLIKNGLLLLAHTFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 +LR W++ D E + A K + H+ P+S QVV L+ + K V Sbjct: 243 PGQLRLAQWEDFDLEAALWRAPADRTKMSRFHITPLSSQVVCLIKEMHR-NKADDTLVMG 301 Query: 295 GRNDKKKPICENAVLLVIKQIG-YEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 R PI + ++ +G + HGFR ST++NE E+ D IE QL H + Sbjct: 302 SRVKPGHPISDMTFNKALRSLGVMGDVHVAHGFRKSASTMLNEQEYNYDWIERQLDHVSQ 361 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +RGIYN AQYL R MMQ W+D+LD + Sbjct: 362 NRIRGIYNAAQYLQGRTRMMQEWSDYLDRLKD 393 >UniRef50_A8EUF6 Putative phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUF6_ARCB4 Length = 405 Score = 359 bits (923), Expect = 8e-98, Method: Composition-based stats. Identities = 114/396 (28%), Positives = 196/396 (49%), Gaps = 15/396 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +I+ AK KEK Y+L DG LYL V +G K ++ + K K ++ G YP ++L+ Sbjct: 8 LTDTEIKKAKAKEKDYKLSDGENLYLVVKSNGTKFFRFDFSYTKKRKSMSFGIYPDISLK 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN-SFSAIYKEWYEHKKQVWSVGYATELAKMF 120 EAR+ A++ + I+P++AK ++ N +F I ++W + W Sbjct: 68 EARELREKAKEQLKQNINPIEAKSSNFGNISTFKYITEKWLKLMTSEWKHVTYELNENRL 127 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG I IE + +L +I++ +++ E A + +++YA+ G K+N Sbjct: 128 RMHVYPAIGDKPISSIEILDILNIIQKLQEKEYFEIAERILNVIERIYKYAVTYGYTKHN 187 Query: 181 PAPDL--ADAMKGYRKKNFPFLPAD-QIPAFNKALATF----SGSIVSLIATKVLRYTAL 233 D+ + L + +I K + ++ I ++ A + Y AL Sbjct: 188 IIADIDKRTVFAKKIVIHRATLTKENEIKELLKDIKSYGELYKADISTIYALNIAPYLAL 247 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R +R + W V+FE + I A+ MK K V+P+S Q +E+L T+ + S++VF Sbjct: 248 RPYNIRLLEWNEVNFEKEYLDIPANKMKTNKDFVLPLSKQALEILKTIKPYSFDRSKYVF 307 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN----EHEWPADAIEVQLA 349 KP + + + ++GY+ + HGFR FSTI + EH + +D IE LA Sbjct: 308 PSPTSNLKPFSDATLNHALMKLGYKDKITSHGFRAMFSTIAHEKIKEHGFHSDIIESCLA 367 Query: 350 HANGGSVRGIYNH---AQYLDKRREMMQWWADWLDE 382 HA ++ YN +Y D+++ +MQWW DWL++ Sbjct: 368 HAETNKIKAAYNRESKMKYYDEKKGLMQWWTDWLNK 403 >UniRef50_A1WP11 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WP11_VEREI Length = 387 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 125/384 (32%), Positives = 191/384 (49%), Gaps = 14/384 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LTV+ +EAAKP+ K Y+L D GLYL+V +G K W+ Y +GK+ T G++P ++L Sbjct: 3 LTVRAVEAAKPRHKGYKLADSVGLYLFVTPAGGKSWRANYLREGKQATRTYGRWPDVSLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSV-GYATELAKMF 120 +A A G+ P A+ SF I + W + K S + +++A Sbjct: 63 ----EARKAHAAARDGVVP-----ATVAVPSFETIARAWLKLKLPTLSNGKHQSQVANTL 113 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + + P IG I I +L++V++ + G +E A++ R VF YA G + + Sbjct: 114 ERFVFPKIGKRPIDTIHRPELVDVVQAVQLDGRVETAHRVAGRIAAVFDYAQDAGLIESH 173 Query: 181 PAPDLADAMKGYRKKN-FPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 PA L + + K + + A +A+ + V+ + ++L +T +R ELR Sbjct: 174 PASHLVRVLHSRKVKKPMASIAPAEAGALMRAITDYD-EPVTGLGLQLLAHTFVRVGELR 232 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 +M W + + I A MK R HVVP+S Q ++ L + EFV Sbjct: 233 AMRWSEFKEDGAVWVIPAERMKLRLPHVVPLSLQAQAIVGQLRLLNAER-EFVMDSPLRP 291 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRG 358 P+ EN L + ++GY G + HGFR ST++NE + D IE QLAH +VR Sbjct: 292 GHPLSENTFLFALYRLGYRGRMTAHGFRALASTVLNEQSGFAHDVIERQLAHKETDAVRA 351 Query: 359 IYNHAQYLDKRREMMQWWADWLDE 382 YN AQYL +RRE+MQWWA WL Sbjct: 352 AYNRAQYLPQRRELMQWWAQWLAA 375 >UniRef50_Q1QLT5 Phage integrase n=2 Tax=Alphaproteobacteria RepID=Q1QLT5_NITHX Length = 416 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 202/398 (50%), Gaps = 21/398 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I AKP +KP+++ D GL+LYV +G K+W+ RY+ KEK+LT+G YP ++L Sbjct: 6 MLTDTAIRKAKPGDKPFKMADSGGLHLYVSTAGGKLWRFRYRYADKEKLLTIGPYPDISL 65 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYAT 114 +AR A+ + G DP KK N+F AI +EWY+ K W +A Sbjct: 66 VDARAARDAAKASLRDGRDPGVIKKLRKLANVTSTANTFEAIAREWYDLNKGQWVERHAD 125 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 ++ + ++ P++G + + DI+ ++L V+R E R A E A + R+R VF YAI + Sbjct: 126 DVLTSLEREVFPVLGNIPVADIKAPEVLAVLRGIEAR-AKETARRVRQRMSAVFVYAISS 184 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPA-DQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 GRA +PA + AM K P + D + +A +++ T + Sbjct: 185 GRADADPAATVQKAMAPMVKGRQPAITDLDAAREMLGKAEAEKAHPATKLALRIIALTVV 244 Query: 234 RTKELRSMLWKNV-DFENRIITIDASVMKGR--------KIHVVPMSDQVVELLTTLSSI 284 R L + W D E+ + I A+ MK R + H VP+S Q +E + L ++ Sbjct: 245 RPGTLITTPWSEWTDMEDGVWRIPAARMKLRLQHKDDDARDHWVPLSRQALEAVEALRTL 304 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD-- 342 T F + + ENA+ ++ + GY HG+R FS++MNE +PAD Sbjct: 305 TG-RGPIPFPNTRHAHRTMSENAIGYLLNRAGYHHRHVPHGWRATFSSVMNE-RFPADKP 362 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 I++ LAH V G YN A +L++RR++ Q WAD + Sbjct: 363 IIDLMLAHVPKDKVEGAYNRALHLERRRKLAQEWADLI 400 >UniRef50_A3M8S0 Putative integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8S0_ACIBT Length = 433 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 114/406 (28%), Positives = 191/406 (47%), Gaps = 26/406 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLMT 59 LT + + KPK+K Y DG GLYL V +G K W RY G K + +T+G YP ++ Sbjct: 8 LTDTKCASLKPKDKEYVEADGGGLYLRVRPTGAKSWIFRYTNRGNDKREKITLGPYPALS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKA----KKASSNNNSFSAIYKEWYEHK--KQVWSVGYA 113 L +AR+K + I+ G+DP + +N N+ + + W + ++ S Sbjct: 68 LAKAREKKHEFLRMIAEGVDPKEQLSILLAKKNNVNTLENVVRVWLDAYAVRKPLSEDTK 127 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + F++ + P I+ I L + + D + + A + R +V+ YA+ Sbjct: 128 NKQLRKFENHLFPKFKDKAIEQITLRDLKDALNVIYD-HSPDNAQRIRASLIQVYSYAVQ 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 + N A DL D RK + F D IP + + SG+ ++ + + +T Sbjct: 187 HSYIQTNIARDLEDMDLSARKNHRATFRSLDLIPQLIRRIKADSGNPLTKLCLLLGLHTF 246 Query: 233 LRTKELRSMLWKNVDFENRIITIDASV------------MKGRKIHVVPMSDQVVELLTT 280 LR+ E+R W +DFE I I K ++ H+VP+S Q +E+L Sbjct: 247 LRSSEIRFARWNEIDFEAEIWRIPPRRRLIEGVKHSDRGAKMKEEHLVPLSKQSIEILEK 306 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNEHE- 338 + + +FVF N+K+ I EN ++++GY + S HGFR + + E Sbjct: 307 VYQYSGD-CDFVFPSLNNKRIFISENTPNDALRRMGYTKEEISFHGFRALARSALGEMSI 365 Query: 339 WPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEK 383 + DA+E Q++H G Y H A+YL++R ++MQ W+DWL Sbjct: 366 FSRDALEKQMSHQERNETVGAYTHIAEYLEEREKIMQIWSDWLSAI 411 >UniRef50_C3XC22 Integrase n=3 Tax=Oxalobacter formigenes RepID=C3XC22_OXAFO Length = 427 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 118/407 (28%), Positives = 199/407 (48%), Gaps = 26/407 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID-GKEKILTVGKYPLMTL 60 L+ QI+ KPKEK Y+L DG GLYL V SG K+W+L+++ GKE L++G YP ++L Sbjct: 8 LSPIQIKNTKPKEKAYKLFDGGGLYLEVLPSGSKLWRLKFQKPSGKESRLSLGAYPDVSL 67 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNS-------------FSAIYKEWYEHKKQV 107 ++ R K AR+ ++ GIDP + +K F I Y KK Sbjct: 68 EQVRKKREEARRLLAQGIDPSEDRKEQKEAKQEQDVIRAFKDDRMFERIAMRLYASKKGR 127 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVI----RRFEDRGAM--ERANKAR 161 + Y + + F+ + P IG I +IE +L + + +G A K Sbjct: 128 TTDDYRNTMLRQFELHLFPAIGKKNIAEIEGRELFTLFKAVSEKLNSKGKPMTYMARKLC 187 Query: 162 RRCGEVFRYA--IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 + EV+ A + A NP + + ++ ++ + ++P F +AL + G I Sbjct: 188 QWAAEVYDLANVENSSFALNNPCRSVIKFLPKHQTEHMARIGFTELPQFIQALEAYGGHI 247 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 ++ A +L YT +R +R W + D I + + IH++P+ +Q + LL Sbjct: 248 LTKSAIWMLLYTGMRQTSIRRAQWSDFDLNKGIWNRKPEKV-DKNIHIIPLPEQAISLLK 306 Query: 280 TLSSITKPVSE-FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 + + SE VF + + E A+ I+++G++ +GHG R ST +NE Sbjct: 307 DIQLLATGNSENLVFPSVFAGQLKMSEAAIGQAIERMGFQ--MTGHGLRSVVSTGLNELG 364 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + +EVQL H G ++ YN+AQ+L++R++MMQ WA++L+ E Sbjct: 365 FTPRLVEVQLGHKKGDAIEAAYNNAQHLEERKKMMQRWANYLNSFKE 411 >UniRef50_B8F737 Phage integrase family site specific recombinase n=4 Tax=Pasteurellaceae RepID=B8F737_HAEPS Length = 416 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 117/404 (28%), Positives = 184/404 (45%), Gaps = 24/404 (5%) Query: 5 KQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMTLQE 62 QI AKPK+K Y L DG GL L V SG KV+ Y T+G+YP ++L + Sbjct: 8 TQIRQAKPKDKDYPLSDGGGLRLIVRKSGAKVFVFNYYKPYTKTRTNFTIGEYPEISLIQ 67 Query: 63 ARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKK--QVWSVGYAT 114 AR + AR ++ IDPV+ + +A+ +F + +W+E +K +S A Sbjct: 68 ARKEHAKARALLAQNIDPVRQRELDKQEQANRLELTFEKMAVKWFEDRKLKADFSERTAK 127 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + +F ILP G I +I P+ + ++ E G +E K + EV RYA+ Sbjct: 128 DTWALFKRHILPHFGNYPISEITPLIAINALKPLERAGKLETIRKTIAKINEVMRYALHR 187 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL--ATFSGSIV--SLIATKVLRY 230 G N D+ ++ + D++ F +A G A ++ Sbjct: 188 GLIATNNLSDIGKEFDKPTPQSMNTIQPDELAEFLQAFYQKRDKGRFGLNVFYAVMLVLL 247 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASV-MKG---RKIHVVPMSDQVVELLTTLSSITK 286 T R E+ W+++D + R+ K + H+V +S Q +ELL + + Sbjct: 248 TGGRPSEIAKAKWEDIDEKERLWAYQVQKGNKNLPEGRTHIVTLSRQSIELLNKMRHFNE 307 Query: 287 P-----VSEFVFAGRNDKKK-PICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWP 340 S FVFA KK + + I + E + HG RH FST +NE + Sbjct: 308 VVNANIQSPFVFASVASKKTGHLSIETMRKAIIKSIGEDRLTTHGIRHLFSTSLNEQNFN 367 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 AD IE L+H + +RG YN A YL++R +M+Q WAD+++E Sbjct: 368 ADWIERALSHKDRNRIRGSYNKANYLEQRFDMLQHWADYVEELA 411 >UniRef50_D0SVD1 Predicted protein n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SVD1_ACILW Length = 399 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 131/391 (33%), Positives = 196/391 (50%), Gaps = 11/391 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMTL 60 L+ K + + P+EK YR LDG GLY V SG K WQ RYK +GK + +G YP ++ Sbjct: 11 LSEKTLSSLVPEEKDYRELDGVGLYFLVKKSGVKNWQYRYKNSEGKWAWMGLGAYPQVSA 70 Query: 61 QEARDKAWTARKDISVGIDPVKAK-----KASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 Q AR KA +S G K + + F + +EW + K W T+ Sbjct: 71 QLARQKAREFTSALSKGESLKSKKVLLEERKELESFYFENLMREWLDTKSSKWGEATYTK 130 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR-GAMERANKARRRCGEVFRYAIVT 174 K + I+P+ G ++I P + + + + G + K + +A Sbjct: 131 AQKSIEKHIIPVFGQGNYKEITPKEWFDFFQGLQRTLGIHTQIEKLVSYVRGCYDWAKFK 190 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 G+ NP ++ + Y N F+ D++PA K + + I ++L R Sbjct: 191 GKINSNPIEGMSKHLDAYESGNMDFVTVDELPALLKKIRNNKKRAIG-IGLELLMMLFPR 249 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W+ DF+ + T A + K R+ H VP+S QV+ LLT L SI P SEF+F Sbjct: 250 PGELRMAKWEQFDFKKALWTKPAEMTKTRQEHQVPLSKQVITLLTELRSIQ-PESEFLFP 308 Query: 295 GRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPAD-AIEVQLAHANG 353 R K I + L + ++GY+G ++ HGFRH STI+N+ + IEV LAH Sbjct: 309 SRLSVNKTISDMTFNLALNRLGYKGKQNPHGFRHLASTILNDAFSDQEQVIEVCLAHKKK 368 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 G V+G+Y+ +Q+LD+RR +MQWWAD+LDE V Sbjct: 369 G-VKGVYDKSQHLDERRVLMQWWADYLDELV 398 >UniRef50_C8QZM9 Integrase family protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZM9_9DELT Length = 409 Score = 356 bits (915), Expect = 8e-97, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 161/392 (41%), Gaps = 21/392 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 + +I +P+ K Y L + NG + + SG K W Y DGK K + +G YP +TL+ Sbjct: 3 FSEAKIRNLRPQSKKYYLREANGFSVRIMPSGAKTWLFIYTFDGKRKEMNLGHYPAVTLE 62 Query: 62 EARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 AR K A G DPV + K+ S + E+ + +A + Sbjct: 63 AARRKYRAAFDLFEQGNDPVAMHLEKKEERRRTPFLSDLVDEYINKHAMRFKRSWAKD-Q 121 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + D++P G + DI ++ ++ + DRG+ AN + ++F +A+ Sbjct: 122 AILNRDVVPAWGQRKAVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFAVDREIL 181 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 + +P + M + L ++I L S A K++ TA R E Sbjct: 182 EISPCTGVK--MPAPKMARDRVLSEEEIRVLWSGLERAKISHEVQRAIKLILVTAQRPGE 239 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 + M + + E R TI A K K H V ++D +EL+ FVF Sbjct: 240 VMGMDFSEI--EGRWWTIPADRAKNGKAHRVYLTDTALELIGE------NTGGFVFPSPR 291 Query: 298 DK--KKPICENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352 + +PI NA+ + ++ + + H R +T M E + I+ L H+ Sbjct: 292 HRENPRPIGSNAMTVAHRRNKDKIPLEDFTPHDLRRTAATFMAEMGTMDEVIDAILNHSK 351 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 G + +YN +Y +++ ++ W L + Sbjct: 352 MGVI-RVYNQYRYDTEKQATLEAWERRLQRIL 382 >UniRef50_A7H3V7 Putative site-specific recombinase, phage integrase family n=2 Tax=Campylobacter jejuni RepID=A7H3V7_CAMJD Length = 399 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 106/395 (26%), Positives = 179/395 (45%), Gaps = 16/395 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLM 58 ML +I+A K K+K Y + D + L L + SGKK + YK + K +T+G+YP + Sbjct: 1 MLNDTKIKALKAKDKKYYIADFDNLLLCIYPSGKKTFIFNYKCPKTLRYKRITLGEYPTL 60 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 L AR + + +++ + + +F + E E KK S Sbjct: 61 NLANARKQRDNLKVNLAENDSIRE-----KSEITFKELALEKMELKKLELSEKTYKSYVS 115 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 I G + + ++ +L+ +F E A+K E+FR+ ++ K Sbjct: 116 YLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTLLNEIFRHGVIKEYIK 175 Query: 179 YNPAPDLADA---MKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NP +L + K + L +I A + + G I IA TA R+ Sbjct: 176 SNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGYISVKIAAMFSLLTAQRS 235 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 +RS W+++D EN I I MK ++ H +P++ Q V +L ++ ++F Sbjct: 236 FSIRSAKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVYMLKKYKEMSINTG-YLFYS 294 Query: 296 RNDKKKPICENAVLLVIKQIGY-EGLESGHGFRHEFSTIMNE----HEWPADAIEVQLAH 350 K + I +N + + +++GY + HGFR FST+ +E H+ +D IE+ LAH Sbjct: 295 LRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLAHENRNKHQMSSDIIELCLAH 354 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 ++ YNHA L ++ +MQWW D+LDE E Sbjct: 355 VEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIAE 389 >UniRef50_Q5R097 Integrase n=2 Tax=Idiomarina RepID=Q5R097_IDILO Length = 436 Score = 353 bits (908), Expect = 5e-96, Method: Composition-based stats. Identities = 115/426 (26%), Positives = 206/426 (48%), Gaps = 44/426 (10%) Query: 3 TVKQIEAAKPKEKP--YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 T K +E KP ++ YR+ G GL L V G K W+L+Y+ + K+K L +G +P +TL Sbjct: 10 THKHVEHLKPSDRDEWYRVAGGTGLRLLVRKQGGKYWRLKYRFNKKQKTLALGVFPNVTL 69 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHK----KQVWSVGYATEL 116 ++A+D A+ ++ G+DP K ++N+NS +W E++ +VWS + + Sbjct: 70 KQAKDATIKAKAMLADGVDPGDTKSTNTNDNSLRFYAAKWLEYQSQATARVWSEDHKARV 129 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 K ++ IL +G I D+ + +I E +G E A + +F Y + Sbjct: 130 WKRLENGILKKLGDKLITDVRKEDVRRLIENVEAKGHHETAKRIADDTQRLFEYVVDQYS 189 Query: 177 AKYNPAPDLADAMK--GYRKKNFPFLPADQIPAFNKALATFS--GSIVSLIATKVLRYTA 232 + + L +K + L +P F + LA ++ G ++ +A ++L T Sbjct: 190 LEDDVDIRLLRPVKVISKPVVHREALDIKNLPFFMQDLANYTQTGRELTALAIELLILTF 249 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R+ ELR W+ D +N++ +I A MK ++ H VP+S + ++++ + IT E + Sbjct: 250 VRSGELRGARWEEFDLDNKVWSIPAERMKMKRPHEVPLSAKALDVIKRIKRITGHY-ELL 308 Query: 293 FAGRNDKKKPICENAVLLVIKQIGY------------------------------EGLES 322 F +P+ +N + + ++GY + Sbjct: 309 FPSETKPDEPMSDNTMRQAMFKMGYFPKAKDTKDGKIAKTYLKYQDNAHYPDGRLKEKAV 368 Query: 323 GHGFRHEFSTIMNEH--EWPADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADW 379 HGFR S+ ++E ++ +DAIE QLAH V+ Y+H A+Y D+R EMM+WW D+ Sbjct: 369 PHGFRTMASSTLHESDQKFRSDAIERQLAHVEQNKVKDAYSHKAEYWDERVEMMEWWGDF 428 Query: 380 LDEKVE 385 ++E+ E Sbjct: 429 VNEQRE 434 >UniRef50_D0SJJ0 Phage integrase n=6 Tax=Acinetobacter RepID=D0SJJ0_ACIJU Length = 406 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 127/404 (31%), Positives = 201/404 (49%), Gaps = 24/404 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ +I+ KP+EK YR+LD LY+ V +GKKVW+L+Y + KE +++G+YP ++L Sbjct: 1 MLSDTKIKNLKPQEKMYRILDAERLYIEVRPTGKKVWRLKYTLHSKEGTISLGEYPSVSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR K + + GI+PV+ K+ +N+N+F AI +E+ + S Y Sbjct: 61 AEARKKKEEIKVLLKDGINPVQEKRKLHQENLIANSNTFKAIAEEYIVEGMKYKSKDYID 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDR--------GAMERANKARRRCGE 166 + + + DI IG I+++ +L +++ R AN+ R Sbjct: 121 QFKRSMEKDIYKAIGHKPIREVTSADILSILKNTITRVRKLSHYGTGEAAANQNRLFISL 180 Query: 167 VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 V +YAIVT RA+ +P + +A++ ++ L D+ L + G+ A Sbjct: 181 VMKYAIVTLRAENDPTYAVKNAIESPETEHARPLDKDERIRLRTRLELYGGTTTVRNACL 240 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDA-------SVM-KGRKIHVVPMSDQVVELL 278 + YT LR E+R M W VDFE R+I K IH+VPMSDQ+ LL Sbjct: 241 AMMYTMLRASEIRRMQWSYVDFEERLIEFPKASRRRKQERSNKKNHIHLVPMSDQLFALL 300 Query: 279 TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 I++ + +VF+ + + + + IG + + H FR ST++NE Sbjct: 301 KEQFEISQYQT-YVFSAPFKNDEMLARTTLNRALVFIGMPEV-TTHDFRATASTLLNEKG 358 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + D I QLAH R YNHA+YL+ RR+M+Q WAD +D Sbjct: 359 YKPDWINKQLAHVEENKTRATYNHAKYLESRRKMLQDWADIVDS 402 >UniRef50_B5JZM6 Site-specfic recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=B5JZM6_9RHOB Length = 411 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 175/385 (45%), Gaps = 13/385 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + A P + DG+GL+L V SG K W R + GK + +G L++L Sbjct: 25 LSAAFVRTAT---TPGKYNDGHGLFLKVVTSGAKRWVQRIVVRGKRTEIGLGSASLVSLA 81 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAKMF 120 EAR+ A RK G DP++AK+ S +F ++ ++ + W +A + Sbjct: 82 EARETALENRKLARAGGDPLQAKRTSEALLTFEEASRKVHKIHEPTWRNKKHAAQFLSTL 141 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P + L++ ++ +L V++ E A + R+R G V ++A+ G + N Sbjct: 142 ETYTFPRMSNLKVSEVTTADVLAVLQPIWLE-KPETAKRVRQRIGTVMKWAVANGWRQDN 200 Query: 181 PAPDLADAMKGYR--KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA ++ A+ + K+ LP D++ A+ + + +A ++ TA R+ E+ Sbjct: 201 PAGAISQALPKQKQPVKHRKSLPYDEVSGCLVAVRSSRAFNATKLALELTVLTACRSGEV 260 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W +D TI A MK K H +P+S + VE+L ++ VF Sbjct: 261 RLAEWSEIDLAKAEWTIPAQRMKASKEHRIPLSGRAVEVLEAAKALDDGTG-LVFPSTTG 319 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVR 357 P+ + + ++K +GY+ HGFR F T E + E LAH+ Sbjct: 320 N--PLSDMTLSKLVKGLGYD--VDVHGFRTSFKTWCQERTTTAREVSEAALAHSIQNKAE 375 Query: 358 GIYNHAQYLDKRREMMQWWADWLDE 382 Y + +KRR++M+ W+ ++ E Sbjct: 376 AAYARSDLFEKRRKLMEQWSCFVAE 400 >UniRef50_A5G0X2 Phage integrase family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G0X2_ACICJ Length = 410 Score = 350 bits (900), Expect = 4e-95, Method: Composition-based stats. Identities = 109/400 (27%), Positives = 164/400 (41%), Gaps = 25/400 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L I A + L DG GLYL V G K W RY + G++ +++G ++L Sbjct: 9 LNALAITNA---NREGNLHDGGGLYLRVRADGSKSWAFRYTMAGRKHWMSLGPLRDVSLS 65 Query: 62 EARDKAWTARKDISVGIDPVKAKK------ASSNNNSFSAIYKEWYEHKKQVWS-VGYAT 114 EAR++A R + G DP+ ++ A +F A+ + E + WS +A Sbjct: 66 EAREQARQLRNLVRDGFDPLAQRRERQHLAAEQTARTFDAVAAAYVEAHRAEWSNPKHAQ 125 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + PIIG + +I + + V+ E A++ R R V YA V Sbjct: 126 QWENTLATYASPIIGKRPVSEISLLDVRRVLDPIWAE-KPETASRLRGRVEAVLAYATVH 184 Query: 175 GRA-KYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 G NPA A K K+ L +PAF L VS + Sbjct: 185 GWRSGDNPARWPGFLDQIYAPKAKVRAVKHHAALDYHDMPAFMAELREREA--VSARCLE 242 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA R+ E R W +DF+ + I A MK +K H VP++ + VELL ++ + Sbjct: 243 FAILTATRSGEARGARWDEIDFDAAVWVIPAPRMKMKKEHRVPLAPRAVELLREMAGRSP 302 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIE 345 +F G KP+ + A+ + + HG R F E +P + E Sbjct: 303 RRDGLIFPG-GAPGKPMTDVALAKAV--AVLRPGFTAHGMRSSFRDWAAEMTSFPREIAE 359 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 V LAH N Y L KRR++M+ WA++ VE Sbjct: 360 VALAHINKDRTEAAYQRGDLLAKRRQLMEAWANYCAGLVE 399 >UniRef50_C8PFJ4 DNA integration/recombination/inversion protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PFJ4_9PROT Length = 383 Score = 350 bits (898), Expect = 7e-95, Method: Composition-based stats. Identities = 107/390 (27%), Positives = 187/390 (47%), Gaps = 22/390 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q++ KPK+KPY + DG+ L + + SG K + YK K K +T+G+ M+L Sbjct: 8 LTATQLKNLKPKDKPYFVGDGSNLLIKIMPSGAKFFIYEYKQGAKYKRVTIGRAGEMSLA 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 EAR + + + +S+ +F +++EW + K + S + + F+ Sbjct: 68 EARQRKSELKT-----------RVKTSDKITFREVFEEWIKTKSK-ISPKQLFWINRRFE 115 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 +LP +G ++I DI ++ + E A K +++A++ +N Sbjct: 116 SLLLPALGSMQIADIGRKDIIGALSPLLSDEKQETAKKVLGALNGFYKFALLHEYVDHNI 175 Query: 182 APDLADA--MKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 D+ A + + ++F + + +I KA+ + G+ + + YTA+R + Sbjct: 176 IADIDKATLIGRRQIRHFAYFKDEAEIRNLIKAVKGYFGNERIKVCALFMLYTAVRGENA 235 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W + + + I AS MK K H V +S V +L+ + + SEF+F Sbjct: 236 RFATWDEI--KGDMWKIPASKMKNGKDHEVFLSSSVRRMLSDYRASSPLQSEFIFPSIKS 293 Query: 299 KKKPICENAVLLVIKQIGYEGLE-SGHGFRHEFSTIMN----EHEWPADAIEVQLAHANG 353 +PI +N V +++ +G+ + HGFR FSTI + EH +D IE+ LAH Sbjct: 294 NVRPISDNTVRSMLRNLGFSNEMITPHGFRATFSTICHEKQDEHGQNSDVIELCLAHVEK 353 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 V+ YNHA+ L +R +MQWW+D+LD Sbjct: 354 NKVKDAYNHAKNLKQRAALMQWWSDFLDGL 383 >UniRef50_Q2T3P2 Integrase n=31 Tax=pseudomallei group RepID=Q2T3P2_BURTA Length = 409 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 121/401 (30%), Positives = 178/401 (44%), Gaps = 26/401 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY-KIDGKEKILTVGKYPLMT 59 +L Q +AKP+E+ YRL DG GL L V +G K WQ RY K DG+E ++ +G YP +T Sbjct: 5 LLRDLQCRSAKPRERVYRLSDGGGLALLVKPNGLKYWQFRYMKPDGREGLIQIGPYPRIT 64 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNS--------FSAIYKEWYEHKKQVW-SV 110 L+ AR R + G DP +K F + E + W + Sbjct: 65 LEAARAARNEHRVAVQGGDDPATLRKQEKARRKIDAARALNFKQCATAFIEARSAEWVNP 124 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 + + PIIG L DI+ + +V+ E A++ R R V + Sbjct: 125 KHTQQWTNTLSTYAYPIIGALRPADIDTDLVRKVLEPIW-LTKNETASRVRGRIESVLDW 183 Query: 171 AIVTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSL 222 A V G NPA LA K + K+ LP +I AF L G+ + Sbjct: 184 AKVRGLRDGENPARWSGHLDQLLAAPGKVQKPKHHAALPFTEIGAFVAELRGMVGT--AA 241 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 A + TA+RT E+ D + ++ T+ A MK ++ H VP+S +ELL TL Sbjct: 242 RALEFTILTAMRTGEVIGARHDEFDADAQLWTVPAERMKAKRAHRVPLSSSALELLKTLP 301 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPA 341 T S VF G + +P+ A+L V++++ G + HGFR F E + Sbjct: 302 --TSADSPVVFEGMRAR-RPLSNMAMLQVLERMK-RGALTVHGFRSTFRDWAAECTPFSN 357 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + +E+ LAHA Y DKRR +MQ WAD ++ Sbjct: 358 EVVEMALAHAIRDKTEAAYRRGDLFDKRRTLMQAWADHIEN 398 >UniRef50_C8Q072 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q072_9GAMM Length = 402 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 112/397 (28%), Positives = 192/397 (48%), Gaps = 18/397 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY--KIDGKEKILTVGKYPLMT 59 LT +IE AKP++KPYRL DG GL L V SG K W L+Y K+ ++ +G+YP + Sbjct: 8 LTTTEIEKAKPQDKPYRLYDGEGLLLNVASSGTKTWYLQYSKPFTKKKDMVNLGRYPTVN 67 Query: 60 LQEARDKAWTARKDISVGIDPV-----KAKKASSNNNS-FSAIYKEWYEHKKQVWSVGYA 113 L +AR + ++ +S IDP +A++ + + F ++++EW KK ++ Sbjct: 68 LADARKQKNYCQELLSKDIDPKTHFEEEARRKEYEHRTDFKSVFEEWLPTKK--YAPKTV 125 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 ++ ++L +IG + + + V++ E G + + K R + YAI Sbjct: 126 EKMENYI-KEMLAVIGNKPVNQVTTEDCMRVLKPVESAGHLTKLEKMRSMMSQTIAYAIA 184 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPF-LPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 TGRAK NP L + P L + +++ ++ G + A Sbjct: 185 TGRAKENPCIHLRGVFMTPETTHAPAILDEAGLTRLVQSIYSYHGHFATRKALLFAIIMF 244 Query: 233 LRTKELRSMLWKNVDFENRII--TIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 R E+R + W+++DFE T + + + P+ Q VE+L + + +E Sbjct: 245 ARPGEIRHLKWQDIDFEYNNWQYTPNKTRKSTGVSMMSPLPTQAVEILKEMKAY--KNAE 302 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEG-LESGHGFRHEFSTIMNEH-EWPADAIEVQL 348 VF N +P+ EN + ++++G+E ++ GFR T++ E ++ IE+QL Sbjct: 303 LVFPSSNSTSRPLSENTLNQALRRMGFENTEQTSQGFRAIARTVLEEKFKYDYRWIELQL 362 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 H S YN Q+LD+RREMMQ WAD+L ++ Sbjct: 363 GHQVRDSNGRAYNRVQWLDERREMMQKWADYLFSLIK 399 >UniRef50_Q5LS43 Site-specfic recombinase, phage integrase family n=4 Tax=Rhodobacterales RepID=Q5LS43_SILPO Length = 406 Score = 348 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 107/385 (27%), Positives = 178/385 (46%), Gaps = 12/385 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + KP + DG+GL+L V +G K W R I GK + +G L++L Sbjct: 21 LSAAFVRTVT---KPGKYTDGHGLFLKVDDTGAKRWVQRIVIRGKRTEIGMGSASLVSLA 77 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAKMF 120 EA + A RK G DP++AK+ + +F ++ ++ + W +A + Sbjct: 78 EASETALQNRKLARAGGDPLQAKRTAQALLTFEEAARKVHKIHEPTWRNKKHAAQFISTL 137 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG L++ ++ +L V++ E A + R+R G V ++AI G N Sbjct: 138 ETYTFPRIGKLKVSEVATADVLAVLQPIWLE-KPETARRVRQRIGTVMKWAIANGWRTDN 196 Query: 181 PAPDLADAMKGY--RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA ++ A+ +++ LP D++P F + L + +A +++ TA R+ E+ Sbjct: 197 PAEAISQALPKQIDTQQHRKALPYDKVPEFLETLKASDAGDFTKLALELVVLTASRSSEV 256 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W D E I T A MK +K H VP+S + +E+L + VF G Sbjct: 257 RKAEWSEFDLEQGIWTRPAERMKSKKEHRVPLSPRALEILIEARELCTGEG-LVFPGTK- 314 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVR 357 KP+ + +L + K +GY+ HGFR F T E P D E LAH Sbjct: 315 IGKPLSDMTLLKLTKALGYD--VDVHGFRTSFKTWAQERTNTPRDVSEAALAHVLKDKAE 372 Query: 358 GIYNHAQYLDKRREMMQWWADWLDE 382 Y + + +KRR++M+ WA ++ Sbjct: 373 AAYARSDFFEKRRKLMERWASYISS 397 >UniRef50_C6N3S0 Putative phage integrase family protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N3S0_9GAMM Length = 397 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 115/387 (29%), Positives = 188/387 (48%), Gaps = 10/387 (2%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGK---KVWQLRYKIDGKEKILTVGKYPL 57 ML+ I + K +K R D +GL L + S K K++ R++ D K + +T+G Y Sbjct: 1 MLSDSLIRSLKLGDKK-RHTDRDGLVLELRPSKKQLKKIFIFRFQWDKKPQTITIGDYRS 59 Query: 58 MTLQEARDKAWTARKDISVGIDPV-KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 + L ARD A R ++ GIDP K +A +F + +W++ K W Sbjct: 60 VGLGAARDIALAYRNMVNSGIDPRSKNVEADQEKITFEVVADQWFQKYKGTWKDFARNRH 119 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 +K DI+P+IG I DI LL +I+ ED G + A++ R +F +A+ + Sbjct: 120 SKSLSRDIIPLIGDKPIDDITKADLLFIIKPHEDLGHHDVAHRLYARLQSIFEFAVGSSL 179 Query: 177 AKYNPAPDLADAM-KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + P L A+ R N P + ++ + + + + + + ++L + R Sbjct: 180 TENFPFIGLKKALIPKPRVINQPAISSNNAHEMMRVIKQTNSTKIVKVYMELLAHLFTRP 239 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 ELR W D + I A MK H VP++ V+ LL L IT + ++F+ Sbjct: 240 TELREAKWSEFDLQKSEWNIPAERMKMGIPHWVPLTPHVLNLLKELRLITG-FTPYLFSS 298 Query: 296 RN-DKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANG 353 K KPI E +V ++ G++ + HGFR S++++E + +DAIE QLAH Sbjct: 299 PALKKAKPISEASVRKLLHNAGFKNRHTAHGFRSLASSVLHEQGNFRSDAIEAQLAHKVQ 358 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWL 380 G VRG+Y A + +RRE+M W++ WL Sbjct: 359 G-VRGVYLRADFKAERRELMHWYSSWL 384 >UniRef50_D0D2S4 Site-specfic recombinase, phage integrase family n=1 Tax=Citreicella sp. SE45 RepID=D0D2S4_9RHOB Length = 479 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 104/380 (27%), Positives = 187/380 (49%), Gaps = 12/380 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++++AA P + DG+GLYL V +G + W R I GK + + +G L+TL Sbjct: 104 LTAQRVKAAT---DPGKYFDGHGLYLLVKPNGSRSWVQRIVIRGKRREMGLGSASLVTLA 160 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAKMF 120 EAR+ A RK G DP++A++ + +F ++ YE + W +A++ Sbjct: 161 EAREAALANRKVARAGGDPIQARQEALAVLTFEEAARKVYEMHRPTWRNPKHASQFINTL 220 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P IG +++ D+ +L V+ E A + R+R G V ++A+ G + N Sbjct: 221 ETYAFPKIGAVKVGDVNTNDVLRVLTPIWT-TKPETARRVRQRIGMVMKWAVAKGWRQDN 279 Query: 181 PAPDLADAMKGY--RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 PA ++ A+ + RK + +P ++P F + ++ +A + L TA R+ E+ Sbjct: 280 PAEAISQALPKHDRRKAHRKAMPYAEVPGFIATVKASKAGALTKLAMEFLILTAARSGEV 339 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R W +D E I T+ A MK ++ H VP+S + +E+L+ +I+ S+ VF G Sbjct: 340 RGASWSEIDSEAAIWTVPADRMKAKREHRVPLSPRALEILSEARAIS-DGSDLVFPGSR- 397 Query: 299 KKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGSVR 357 + +P+ + + + +++G+ HGFR F E + P + E LAH Sbjct: 398 RGRPLSDMTLSKLTRELGFA--VDVHGFRTSFRMWAQEQTDAPREVAEAALAHTIRNQAE 455 Query: 358 GIYNHAQYLDKRREMMQWWA 377 Y + ++RR +M+ W+ Sbjct: 456 AAYARSDLFERRRSLMERWS 475 >UniRef50_A7JZW2 Site-specific recombinase, phage integrase family protein n=2 Tax=Vibrio sp. Ex25 RepID=A7JZW2_VIBSE Length = 471 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 111/422 (26%), Positives = 186/422 (44%), Gaps = 44/422 (10%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT QI+ A +K Y L DG LYL + +G K W Y K K + +G YP MT Sbjct: 29 LTNTQIKNAAKSDKEYSLSDGGNLYLRIRKNGSKNWLFIYTDFSTKKRKKMGLGSYPNMT 88 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWY------------ 101 L E R A RK ++ GIDP ++ + +F AI ++ Sbjct: 89 LDEVRKVAKELRKQMTKGIDPKLFREKQKLDRLVESQLTFKAIAEKMLLKEEIQETTNRE 148 Query: 102 --------------------EHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQL 141 E + V + ++ P +G L + I + Sbjct: 149 KLIVEERERARIKGTVFGQDEIDRITNKVRSSHRKRLFLKRNLYPKLGNLPLTYITAAGV 208 Query: 142 LEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP 201 + VI + +G +E +A +V ++A+ + K N D+ D + + +P Sbjct: 209 ISVIEPMQAKGQLENVKRACCIANQVMKFAVNSNIIKSNCLADIKDNFAKSKVTHMLKVP 268 Query: 202 ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMK 261 +++ ++ V+ A ++ +T R EL +M W +++ +N++ TI A K Sbjct: 269 PNELGEVMAIMSNNQMKPVTRCAFEMQMHTMARADELAAMRWCDINVKNKLWTIPAFYTK 328 Query: 262 GRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG--RNDKKKPICENAVLLVIKQIGYEG 319 G++ H+VP++D + +L + I+ VF N K I AV + +G Sbjct: 329 GKREHLVPLNDYTLGILEFIRPISGE-HIHVFPSDKPNTKFPHISPYAVNSSLNLTSLKG 387 Query: 320 LESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD 378 HGFR ST +NEH+ + DAIE+ LAH + + R YN A YLD+R E++Q+W+D Sbjct: 388 RLVSHGFRGIASTYLNEHKQFREDAIEMCLAHLDKNTTRASYNSALYLDERYEILQFWSD 447 Query: 379 WL 380 ++ Sbjct: 448 YI 449 >UniRef50_C0VMY9 Integrase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VMY9_9GAMM Length = 429 Score = 347 bits (890), Expect = 6e-94, Method: Composition-based stats. Identities = 116/402 (28%), Positives = 196/402 (48%), Gaps = 24/402 (5%) Query: 2 LTVKQIEAA---KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEK--ILTVGKYP 56 LT K+++ K R DG GLYL + + K W++ Y+ +K L +G YP Sbjct: 8 LTAKEVKNLSFDVSGAKKQRHPDGGGLYLLIDETEAKYWRMDYRRPVTQKYNTLAIGTYP 67 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSV 110 ++L++AR K +K ++ GIDP + + N+FS EW + +K V Sbjct: 68 TISLEQARSKRDEFKKMLANGIDPAEQRNNKKREQLQTLENTFSKFAAEWLDIRKHEGKV 127 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQL-LEVIRRFEDRGAMERANKARRRCGEVFR 169 + E + + DILP IG L + ++ QL +V +RGA+E A + + V + Sbjct: 128 DH--ETIRKLNRDILPFIGKLPVAELTTEQLERDVTDALVERGALESARRIKSIINMVLK 185 Query: 170 YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI-----VSLIA 224 + YNPAPD+ + + + ++ + + + +A Sbjct: 186 LPLKRRIITYNPAPDIILP-QPTKGNHNAVTDEKELADLLRKTWRLTKDFPRTRIRTELA 244 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 K+ Y R E+R++LW++VDFENR ++ AS K + H+VP+S Q ++L L + Sbjct: 245 IKLSAYIYQRPGEVRTLLWESVDFENRCLSFAAS--KTNQDHIVPLSIQAYDILKELEEL 302 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM-NEHEWPADA 343 S++VF + + + + V+K++G++G + HGFR T++ E E+ D Sbjct: 303 RT-TSKYVFPSVKTSSECMSTDTLTQVLKRLGFKGKHTAHGFRATARTLLDEEIEYRTDI 361 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +E QLAH YN ++L +RREMMQ WAD+LD + Sbjct: 362 VEHQLAHKVKDPNGTAYNRTKFLRRRREMMQLWADYLDTLRQ 403 >UniRef50_A6Q4N1 Site-specific recombinase, phage integrase family n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4N1_NITSB Length = 412 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 107/406 (26%), Positives = 194/406 (47%), Gaps = 25/406 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L Q+ AKPKEK Y+L DG GLY+ + +G+K+++L Y GK T+G YP ++L Sbjct: 8 LNDLQLRNAKPKEKNYKLRDGEGLYILIKPNGRKIFRLDYVYAGKRNTYTIGDYPQISLA 67 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSA-------IYKEWYEHKKQVWSVGYAT 114 +AR + ++ I GIDP + K+ A + + + +HK + S Sbjct: 68 QARKIKYEVKELIKNGIDPNRYKQEQKRIKELEANKKFTSFVIERFIQHKAKEVSKARLQ 127 Query: 115 E-LAKMFDDDILPIIGGLEIQDIEPMQLLEVIR-----RFED----RGAMERANKARRRC 164 + F + I P IG ++I ++ ++++++ + + G +A + R Sbjct: 128 KNYINTFANYITPFIGEVKIDEVTKQDIIKIVKNTYSTKLQKDNRSTGKTYKAREVYRLL 187 Query: 165 GEVFRYAIVTGRAKYNPA--PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSL 222 +F +AI + NPA D+ + ++ + ++I + + + Sbjct: 188 KSLFDFAIHNDYTQTNPAVGIDIDSLIPKHKPTRHKAVTNERIKEIYQKICSLQNPYF-R 246 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR-KIHVVPMSDQVVELLTTL 281 + + + TA+R + ++ W DF+ R+I A MK + + +P++D +V+++ Sbjct: 247 LPLQYIALTAVRFGNVANLKWDYKDFDKRVIIYPAEAMKTKNQPFRIPLTDAIVKVIQQA 306 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM----NEH 337 +I P SE VF + KPI +N + V+K E + HGFR F TI EH Sbjct: 307 KAIASPYSEIVFGSPINAHKPISDNTLRKVLKIDLNEPEQDLHGFRSSFETIALEHQKEH 366 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +AIE QL H G V Y + +L+ R+E++ WWA++L+ + Sbjct: 367 GCSFEAIEAQLHHNIGSKVTQSYLRSDFLEDRKELLNWWANYLNSQ 412 >UniRef50_C6QCE7 Integrase family protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QCE7_9RHIZ Length = 418 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 105/387 (27%), Positives = 170/387 (43%), Gaps = 25/387 (6%) Query: 14 EKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 +KP DG GLYL V SG + W RY D K + L +G ++L AR A AR+ Sbjct: 17 KKPGLYPDGAGLYLRVKPSGARSWVFRYMHDRKPRYLGLGSAASVSLATARSLAGDARRQ 76 Query: 74 ISVGIDPVKAKKA--------SSNNNSFSAIYKEWYEHKKQVWS-VGYATELAKMFDDDI 124 + +G DP++AK+A + +F + + + W + + + Sbjct: 77 LDLGQDPIEAKRAAERETAADKARAMTFKECAEAYMAAHEPSWKNAKHCEQWHSTLRRYL 136 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG-RAKYNPAP 183 P GG+ + + + E I+ E A++ R R V +A G + NPA Sbjct: 137 YPKFGGIAVALVTTEMVFEAIQPIW-HSMPETASRVRGRIEVVIDWAKARGAFSGENPAR 195 Query: 184 D-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 L K + ++ +P D +PA L +G ++ A + TA RT Sbjct: 196 WRGHLANLLPKPSKVAKVEHHAAMPFDDLPALMSELRAATG--LTSRALEFTILTAARTT 253 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E W D E +I T+ A MK K H VP+S + VE++ L ++ +EFVF G Sbjct: 254 EALGAQWSEFDLEKKIWTVPAVRMKAGKDHRVPLSTRAVEIIKELETV--KRNEFVFPGE 311 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANGGS 355 + + ++L++++++ G + HGFR F E +P +E+ LAHA Sbjct: 312 K-PGRHLSNMSMLMLLRRLK-RGELTVHGFRSTFRDWAAETTSFPNFIVEMALAHAIESK 369 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDE 382 V G Y L+KRR +M W + + Sbjct: 370 VEGAYRRGDLLEKRRALMVAWMQYCAK 396 >UniRef50_A1ATP4 Phage integrase family protein n=2 Tax=Desulfuromonadales RepID=A1ATP4_PELPD Length = 449 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 83/425 (19%), Positives = 167/425 (39%), Gaps = 49/425 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 T I KP E Y +GNG + V SG K W Y DGK + + +G YP +TL+ Sbjct: 14 FTDTMIRKLKPTESDYTRSEGNGFTIRVMPSGSKTWLYLYAFDGKRRKMNLGSYPDVTLE 73 Query: 62 EARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 AR + A++ + IDP+ + + + + + ++ E + + +A + Sbjct: 74 TARGRFEDAKRKVKNNIDPMAEAEEQAEERRKAPTVADLVHDYIERHAKRFKRSWAKD-E 132 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 ++ + +++P G + D+ +L ++ +R A AN + ++F +A+ Sbjct: 133 QILNREVVPAWGKRKAADVTKRDILRLLEEIVNRNAPAMANNTFQIIRKMFNWAVEQDIL 192 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL--ATFSGSIVSLIATKVLRYTALRT 235 ++ P + + + L +I + L S A +++ TA R Sbjct: 193 QHTPCTGVK--LPSPKLSRDRVLSESEIKTLWENLGRPDAGMSDGVRRALRLILTTAQRP 250 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK--------- 286 E+ + +D TI A K K H V +S +E++ + K Sbjct: 251 GEVTGLHTSELD--GCWWTIPAERAKNGKTHRVYLSGLALEIINQAIAQAKKSRETPYDQ 308 Query: 287 PVSEFVFA-GRNDKKKPICENAVLLVI--------------------------KQIGYEG 319 + +VF K+KP+ + A+ + + ++G Sbjct: 309 EYNGYVFPCHHKSKEKPMGDTALAVAVGRALASPLTDDKGNPLFTAAGKPATENRLGI-D 367 Query: 320 LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADW 379 + H R +T M + + I+ L HA G + +YN +Y ++++ ++ W + Sbjct: 368 HFTPHDLRRTTATFMASMGFMDEVIDAVLNHAKQGVI-KVYNQYRYDVEKQQALETWENK 426 Query: 380 LDEKV 384 L + Sbjct: 427 LKTIL 431 >UniRef50_B0VTB2 Putative prophage integrase n=1 Tax=Acinetobacter baumannii SDF RepID=B0VTB2_ACIBS Length = 388 Score = 342 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 117/393 (29%), Positives = 194/393 (49%), Gaps = 19/393 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML+ Q+++ KPKE Y + DG GL + V +GKK W L Y+ +GK+ +G+YP+M Sbjct: 1 MLSDAQVKSLKPKESRYSVADGEGLNISVFPNGKKKWVLSYRQNGKQNQKMLGEYPVMGC 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKM 119 +EAR +A + ++ + +N+ + +EW K W S Y + Sbjct: 61 KEARLQARQLK---------LEYQGKVANSPPVHKVIEEWLSIMKSQWTSKKYYDTVEYR 111 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + L I ++E + + I+ +G +E A++A R +VF +AI + Sbjct: 112 LA-YLTEDFKNLPINEVERKHISKKIKEIVAKGTLETASRALRLGKQVFDFAIASDYTDR 170 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 NP + D + Y + P LPA ++P F + + S + +A ++ YT R EL Sbjct: 171 NPCTLVEDVIPEYESDSHPCLPASEMPEFFRRMQASHSSSIVKMAMLLVCYTGTRITELL 230 Query: 240 SMLWK--NVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 W +DFEN++ I A MK RK +VP+ Q+ L L S+ ++F R Sbjct: 231 KARWDSGELDFENKVWIIPADRMKRRKELMVPLVPQIYALFKELESVKIDDG-YIFKKRG 289 Query: 298 DKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHANG--- 353 + + +VL +IK++GYE HGFR FST NE + + + I+ Q+AH N Sbjct: 290 KPYEYMTSESVLTMIKRMGYEDKMVTHGFRSLFSTHANESKLFRGEVIDYQIAHVNKSTK 349 Query: 354 -GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 IYN A+Y D+R E+M W+A+ ++ ++ Sbjct: 350 ADKTSKIYNRAEYWDERVELMTWYANEVEGWIK 382 >UniRef50_Q1N9F3 Putative integrase prophage protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9F3_9SPHN Length = 443 Score = 340 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 132/419 (31%), Positives = 205/419 (48%), Gaps = 41/419 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT+ +I+ AKP+ YRL D GL+L+V +G K W+ RY+I KEK LT+G+YP M L Sbjct: 3 LTIVEIKNAKPQASDYRLADSQGLFLHVTSAGGKFWRYRYRIGPKEKTLTLGRYPEMGLV 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 AR+ ARK +S G DP K+ + +F + +EW ++ +WSV A Sbjct: 63 AAREAHHEARKLVSEGKDPALEKQKAKIARIEAAKITFRKLAEEWLADQEPIWSVSNAKR 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + F+ D+ P+ G L I IE +L +R+ E RG++E A + R VFR A G Sbjct: 123 VRHRFERDLYPLFGNLPICQIESAPILRALRKIEARGSIETAKRVRGYIKSVFRRAKGEG 182 Query: 176 RAKYNP---APDLADAMKGYRK-KNFPFLPA-DQIPAFNKALATFSGSIVSLIATKVLRY 230 + ++ DA+K R+ P L + F KA+ + S+ +A+++L Sbjct: 183 LVDHAILLEIDEIKDALKPARRGSKQPALTEVPETLEFQKAVDRSTSSLTVKLASRLLAL 242 Query: 231 TALRTKELRSMLWKN---VDFEN-------RIITIDASVMKGRKI--------HVVPMSD 272 T +R LR+ LW +D++N I I AS MK H VP+ Sbjct: 243 TLVRVGVLRTALWSEFEGIDWDNPDAIPNAPIWRIPASRMKLDVEDKGNPAFGHDVPLPH 302 Query: 273 QVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIG---YEGLESGHGFRHE 329 Q VE+L L +T + +F ++P+ + A+ + K++G Y+ + HG+R Sbjct: 303 QAVEVLRALRPLTGGFA-LLFPNSKSWREPMSDAALSTMYKRMGGGRYKNVMVPHGWRSS 361 Query: 330 FSTIMNEHEWPAD------AIEVQLAHANGGSVRG--IYNHAQYLDKRREMMQWWADWL 380 FSTIMNE + I++ LAH G YN ++Y R ++Q WAD + Sbjct: 362 FSTIMNERAAELERDGDRMVIDLVLAHVPPGVSASEWSYNRSRYRKPRGTLIQIWADLI 420 >UniRef50_A4F5J8 Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=A4F5J8_9BACT Length = 390 Score = 339 bits (871), Expect = 9e-92, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 15/378 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K I+A KP EK Y++ D +GLYL V SG ++ Y+ + +++ +T+GKY +TL Sbjct: 3 LTDKAIKALKPGEKTYKVADRDGLYLSVAPSGTMSFRFNYRYNNRQQTVTLGKYGEITLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS---NNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 +AR+K A+ D++ GI P K K+ NSFS ++ E + Sbjct: 63 QAREKLLKAKADLAAGISPAKKKQEIKNTLAENSFSVWLDKYTEEC--GVADSTKKMRGY 120 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D+ + P +G + + +I ++ + + A A R V+ +A + G K Sbjct: 121 AIDNYLRPALGKMSLFEITENEVRALAEDLVKQQAPSTALLCRMIIKNVYTFASMHGGPK 180 Query: 179 -YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 +P + + K + +I + S I S A K++ T LR E Sbjct: 181 LKSPTDFVRPSSIHTFKSRTRAMSPREIGYVLNGIEQSSSDISSKSAFKLILLTLLRKSE 240 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 + + +W +D+ + I A MK ++ H V +S Q ++L L +++ S+F+F + Sbjct: 241 VINGVWSEIDWNEKTWRIPAERMKTKRPHNVYLSKQAFDILVCLRTLSTCKSDFIFPAKY 300 Query: 298 DKKKPICENAVLLVI-------KQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 KP+ + ++ K+ G E + H R ST++NE E+ +D IE LA Sbjct: 301 GLNKPMATSTPNRLLELGMANAKKAGIEIEPCTIHDLRRTASTLLNEAEFNSDWIEASLA 360 Query: 350 HANGGSVRGIYNHAQYLD 367 H G VR +YN A Y + Sbjct: 361 HVASG-VRAVYNVADYRE 377 >UniRef50_Q0EWR9 Integrative genetic element Gsu32, integrase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWR9_9PROT Length = 391 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 161/394 (40%), Gaps = 17/394 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 T + I++ +P K + + + G + V +G K + YKI+G++K L+ G YP M+ Sbjct: 3 FTDRSIKSIRPTGKRFEVRETGRTGFAVRVSTTGTKTFVFIYKINGQKKRLSFGTYPAMS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAK----KASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 L EA A+ ++ G DP K + N + + K + +V + E Sbjct: 63 LNEAHLLYEEAKLELEKGNDPALIKAKKSQLEKNEVTIPELIKLYINQYAKVRKTSW-EE 121 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + DILP + +I + V+ +RGA AN+ +VF YA G Sbjct: 122 DERQLNKDILPRWKNRKAIEINKSDVHAVLDTLIERGAPIGANRLLAVLKKVFNYAKEKG 181 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 NP ++ L A++I F L + + A K T R Sbjct: 182 YVTNNPCDEITPP--ATETSRDRVLTANEIKTFWHQLDCTNMHSSTKNALKFQLITLQRR 239 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 KE+ W ++ + I A K +K H V +S +LL S +K S F+F Sbjct: 240 KEVALARWNDIHGD--TWVIPAGTAKNKKRHDVHLSQFAKKLLIEAKSYSKD-SPFLFPS 296 Query: 296 RNDKK-KPICENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNEHEW-PADAIEVQLAH 350 K I +A+ +K+ S H R +T + + + + + L H Sbjct: 297 PCGAGSKHIRPDALSKAVKRNMETLMVQDFSPHDLRRTAATFLTKSKIANRLVLSLMLNH 356 Query: 351 ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + G SV +Y+ +Y ++++ + W L+E + Sbjct: 357 SQGKSVTAVYDKYEYFTEQQKAWEAWGVKLEEII 390 >UniRef50_B3R9I1 Prophage INTEGRASE PROTEIN n=1 Tax=Cupriavidus taiwanensis RepID=B3R9I1_CUPTR Length = 412 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 101/392 (25%), Positives = 163/392 (41%), Gaps = 15/392 (3%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L + IE +K + K + DG GLYL + SG K + LRY + G K+ +G +P M + Sbjct: 4 LNNRLIERSKIQPKTKFIADGEGLYLRLEPSGTKTFCLRYTVAGSRKLKVLGTFPDMDIA 63 Query: 62 EARDKAWTARKDISVGID-PVKAKK--ASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 AR +A R+ + V P +K+ A ++ + + + EW E + + Sbjct: 64 AARKQASEMRELLEVHDSLPSASKEVDALTSPITVAQLATEW-EMRYCRQRYKRPDKELH 122 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 DI+P+IG +Q++ + VI + DRGA +AN+ +F YA+ G Sbjct: 123 YLKSDIVPVIGQELVQNVTGRHVSLVIGKIVDRGARTKANRTLCVLKSLFGYAVEHGYID 182 Query: 179 YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFS--GSIVSLIATKVLRYTALRTK 236 P G K L +I AL + + + K++ TA R Sbjct: 183 ATPVAMTKKGAGGAEKARSRVLNPKEIETLWHALDSRRRRMNWRTKALLKLILLTAQRPG 242 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG- 295 E M W++VD N I + A + K + HVV +S V +L T S +VF Sbjct: 243 ECCGMRWEDVDLANGIWFLPAELTKSDRDHVVHLSHMAVSILKMAEKETG-GSVYVFNSV 301 Query: 296 RNDKKKPICENAVLLVIKQI------GYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLA 349 + +A+ + ++ G + H R ST M E L Sbjct: 302 VKGRDVATTVDALTRAVARMLANGEFGAMKRFTPHDLRRTASTGMANAGVYPHITEKILN 361 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 H G V +YNH +YL +R+ M+ W ++ Sbjct: 362 HRMKG-VLAVYNHGEYLPERKAAMELWGRLIE 392 >UniRef50_C9M6R5 Site-specific recombinase, phage integrase family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6R5_9BACT Length = 393 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 119/391 (30%), Positives = 183/391 (46%), Gaps = 14/391 (3%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I+ K E Y +LDGNGLYL V +G+KVW +RY ID K LT+G YP+M L Sbjct: 1 MLTDTAIKRLKLGETRYLILDGNGLYLLVCPNGRKVWTVRYWIDKKLHQLTIGDYPMMGL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 EAR + + D + K A+ +F +EWYE +K+ A L + Sbjct: 61 AEARAERDEIKNDAR-----YEKKVAAPMGLTFGEFAREWYEKRKRPKLSKSAQALYDLR 115 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + P++ + +I ++++ + + ++ E + V YA+ T + Y+ Sbjct: 116 FRYLDPLM-ARPLTEITREEIVDTLHKLSEQHPAETVRRTGGIVSMVMGYALATRKIPYD 174 Query: 181 PAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 P+ L + + K P A +I +AL + S+V A +++ YT +R+ E Sbjct: 175 PSSQLGLELPIHVSKPMPAATHASEIGVLMRALESID-SLVLRSAIQLIAYTFVRSGEAC 233 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 W +D + + ++ A K + H+VP+S Q V +L TL +F RN Sbjct: 234 LARWDEIDLKEGLWSVPAEHTKTKLDHLVPLSRQAVMILDTLRRRFGGKG-HIFPSRNRG 292 Query: 300 KKPICENAVLLVIKQIGYEGLESG-----HGFRHEFSTIMNEHEWPADAIEVQLAHANGG 354 K I ++K HGFR ST++NEH+W D IE QL H Sbjct: 293 KLVIPSTLSREMVKLQSLPLEARPIPTVVHGFRATASTVLNEHQWNRDVIEAQLGHFERN 352 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 R YN A+YL R MMQW+AD+LD + Sbjct: 353 KSRRAYNRAEYLPIRISMMQWYADYLDALRD 383 >UniRef50_C6RLT7 Phage integrase n=2 Tax=Acinetobacter radioresistens RepID=C6RLT7_ACIRA Length = 405 Score = 337 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 119/404 (29%), Positives = 191/404 (47%), Gaps = 26/404 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML +I+ K K+K YR+ D GL L V +G K W+ RY+ K+LT+G YP ++L Sbjct: 1 MLNDLKIKQLKAKDKMYRVADHAGLCLEVRTTGSKFWRYRYRYLNIPKMLTIGPYPEISL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYAT 114 ARDK R ++ +DPV +K + + ++F +I E+ E K S + Sbjct: 61 SYARDKTREYRGMLAKNLDPVTEQKKALDSAMDAIQHTFKSISNEYLEKYKDTHSQEWYE 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIR------RFEDRGAMER-ANKARRRCGEV 167 + F DI P+IG I+++ + ++ R RG E A R+ C EV Sbjct: 121 NRLRYFKKDINPVIGNKPIKEVNSNDIRVILDNTITRIRKSKRGTGEVKAIYVRQICAEV 180 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 +YAI+T + +P L ++ + L + + G+ + A + Sbjct: 181 MQYAIITLKIINDPTIALRSYIRRPPVNHATPLEEKDKKVILALINQYGGTTGTQNALRT 240 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITID----------ASVMKGRKIHVVPMSDQVVEL 277 Y+ LRT E+R V+ ++ +TI MK + HVVP+S Q++E+ Sbjct: 241 ALYSMLRTIEIRRAKKSFVNLKDATLTIPRVSNAQIKDGKRNMKKNRTHVVPLSTQMLEI 300 Query: 278 LTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH 337 + + P S ++F G + + +N + + +G G + H FR ST +NE Sbjct: 301 IKEQLQLY-PDSIYLFPGDDGIS-MLGKNTLNEALVNMGL-GHITMHDFRATASTYLNEQ 357 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + D IE+QLAH +G R YNHA +L RR+MMQ AD +D Sbjct: 358 NYSKDWIELQLAHVDGDMSRASYNHASWLKDRRQMMQHLADTID 401 >UniRef50_A2SG96 Integrase or site-specific recombinase n=19 Tax=Proteobacteria RepID=A2SG96_METPP Length = 466 Score = 336 bits (863), Expect = 9e-91, Method: Composition-based stats. Identities = 110/417 (26%), Positives = 178/417 (42%), Gaps = 39/417 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 LT Q++A KP++K Y++ D +GLY YV SG + Y+I + + LT+G+Y Sbjct: 21 LTDLQLKALKPRDKAYKVSDRDGLYAYVAPSGTVSLRYDYRIGRRRETLTLGRYDATAPA 80 Query: 58 --------------MTLQEARDKAWTARKDISVGIDP----VKAKKASSNNNSFSAIYKE 99 ++L EAR A++ + G+ P + K A S+ +F + Sbjct: 81 RVPRSLDVLEYGMGLSLAEARLLLTKAKRALEQGVSPSRAKAEQKAAESDALTFGKWAER 140 Query: 100 WYEHKKQVWSV------GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGA 153 ++E K S + + +G L +++I P +L + + + Sbjct: 141 YFEFKGDPKSKGEQLADSTLAMRRSTYKRALEKPLGKLMLEEITPNRLAALCDDIKAQRG 200 Query: 154 MERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALA 213 A AR V+R+ G NPA + + + L ++ F AL Sbjct: 201 PAVAVHAREIVLMVYRHVQRKGIEVPNPAERVQASAIARFEPRDRALSPSELRLFLAALD 260 Query: 214 TFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQ 273 + +A + + T +R E W + F+ TI + MKG + HVV +SDQ Sbjct: 261 QCATMPTLRLAVRFVLLTGVRKGEFIGATWDEIVFDTETWTIPSRRMKGGRAHVVYLSDQ 320 Query: 274 VVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEG---------LESGH 324 +++LTTL S S ++ GR D PI + + VI + G + H Sbjct: 321 AMDILTTLRSCFSA-SRYLHPGRYDSDLPISDATLNRVI-AMAIRGIQATAPEFQPFTVH 378 Query: 325 GFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 R FST +N ++ IE+ LAH + YN A+Y +RR MMQ WAD LD Sbjct: 379 DLRRTFSTSLNRAKFDERWIEMALAHVPRNRIAATYNVARYAAERRIMMQAWADMLD 435 >UniRef50_Q74H29 Integrative genetic element Gsu32, integrase n=1 Tax=Geobacter sulfurreducens RepID=Q74H29_GEOSL Length = 439 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 99/437 (22%), Positives = 179/437 (40%), Gaps = 60/437 (13%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 + K + A KP+EKPY + +G+G + V SG + + Y DGK + L +GKYP ++L Sbjct: 8 FSDKFLRALKPQEKPYDIREGDGFGVRVFPSGARSFFYMYHFDGKRRFLNLGKYPQLSLA 67 Query: 62 EARDKAWTARKDISVGIDP----VKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATEL 116 +AR K A + GIDP + K+ + + + E+ ++ +V+ ATE Sbjct: 68 DARQKHRDAVSQHAKGIDPLAATQEQKRERREAITVADLIDEYVKNWAKVYKVERSATED 127 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D+LP G + +DI+ + ++ R RG+ +A + +++ +AI Sbjct: 128 ERALSKDVLPYWGKRKAKDIKRTDAIALLERIVRRGSPGQARNILKVGRKMYEFAIERKY 187 Query: 177 AKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NP ++ A+ + L +I A+ +GS + A K++ TA R Sbjct: 188 VEANPFSRISKAVPATMPRTRSRVLTESEIKYIWSAIDKSAGSDETKRALKLILVTAQRP 247 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRK-----------IHVVPMSDQVVELLTT---- 280 E+ M + +D E TI +K K H V +S +EL+ Sbjct: 248 GEVIGMHRREIDGE--WWTIPPERIKTEKDRTRSNSVGPQPHRVYLSPLALELIGDKDGY 305 Query: 281 ------------------------LSSITKPVSEFVFAGRNDKKKPICENAVLLVI-KQI 315 + + + VFAG P+ A++ ++ K+I Sbjct: 306 IFESPRGGAMDSKALSHVVHAAPLVPELVRDTEGHVFAGPCG---PVAAKALMQLLEKEI 362 Query: 316 GYEG--------LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLD 367 Y + H R T M+ P E L H G ++ Y+ +Y Sbjct: 363 AYPDKEKYYGLTRWTPHDLRRTARTRMSAINIPTRHAERVLNHTLPG-IQKTYDLYRYDP 421 Query: 368 KRREMMQWWADWLDEKV 384 +++ + WA +L+E + Sbjct: 422 QKKAALTKWAAYLEELL 438 >UniRef50_A3M8T8 Phage integrase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M8T8_ACIBT Length = 425 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 123/419 (29%), Positives = 193/419 (46%), Gaps = 36/419 (8%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 ML Q++ KP++KPYR LD + LY+ V SGKKVW ++ ++ KE +T G+YP ++L Sbjct: 1 MLKDTQVKNLKPQDKPYRKLDADRLYIEVRPSGKKVWIHKFSLNKKEGSITYGEYPSISL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHKKQVWSVGYAT 114 EAR R ++ GI+PV + + +F EW E K S Y Sbjct: 61 AEARYYHARDRALLAKGINPVAHRNETARLALETEQETFKKYGDEWKEKHKIDKSEDYKK 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIR-------------RFEDRGAMERANKAR 161 + DI P+IG L +D+ +L +I + + A + Sbjct: 121 LIEYGLKTDIYPVIGHLHPKDVTSKHVLLIINNTMERIRTSTRSQKLKPSTGETTAIVNK 180 Query: 162 RRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVS 221 G + R I+ G A+ +P + +K + + L +I + + ++G+ + Sbjct: 181 TFIGMIMRSCIMKGLAEVDPTYAVKGVIKRQKINHARPLSMKEIRELKERIPLYNGAQTT 240 Query: 222 LIATKVLRYTALRTKELRSMLWKNVDFENRIITID----------ASVMKGRKIHVVPMS 271 A L YT LRT E+R + W VD+EN+ IT MK KIH++P+S Sbjct: 241 RNALNFLFYTMLRTIEVRRLEWAWVDWENKTITFPERTFQEIIEGKRAMKNNKIHLLPLS 300 Query: 272 DQVVELLTTLSSITKPVSEFVFAGR-----NDKKKPICENAVLLVIKQIGYEGLESGHGF 326 DQ +L +IT +FVF+ +K + + + + + + S H Sbjct: 301 DQAFSILKEQYTIT-AKCQFVFSSPMQLTLGKPEKMLGRSTLNFALDALKMNDV-SPHDA 358 Query: 327 RHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 R ST +NE IE QL+H + R YNHA++L RR M+QW+AD+LD K E Sbjct: 359 RATASTYLNELGSDDRWIEKQLSHTDNDKTRATYNHAKWLRNRRSMLQWYADFLDGKAE 417 >UniRef50_UPI0000E0F7C9 site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F7C9 Length = 374 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 104/389 (26%), Positives = 182/389 (46%), Gaps = 23/389 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK-IDGKEKILTVGKYPLMT 59 MLT +I K K R LD +GLYL V SG K W+ RYK G + +G YP ++ Sbjct: 1 MLTNTKIHRLKTPTKLERHLDSDGLYLEVTKSGSKNWRYRYKNHTGSWTMKALGSYPKIS 60 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L++AR A SF EW K S + + Sbjct: 61 LEKARALLDDL------------EVVAEYKCISFKETASEWL-VYKGYTSYKNKHLVHRR 107 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 ++ +LP +G + I +I+P +L ++++ E +G +E A + + ++F+Y + + Sbjct: 108 IENYLLPKLGNMTIANIKPKDILPILKQIEAKGHLELARRVQNILSQIFKYGVQNLYCET 167 Query: 180 NPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSG-SIVSLIATKVLRYTALRTKE 237 NPA L K ++ P + + + + S + ++ + LR++ Sbjct: 168 NPAQPLQGCTKQPSVRHMPAIVEQSEFARLLATIDSASNLMPSVKLCLQLAPHVFLRSQS 227 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 +R +++DF+ ++ I K + H +P+++ V+E+L T +I + E++F G Sbjct: 228 IRMAKPEHIDFDRKLWVIPKD--KMGREHWIPLTEPVIEMLQT--AIAQTNGEYLFNGIK 283 Query: 298 DKKKPICENAVLLVIKQIGYEGL-ESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGS 355 P+ EN + ++ +G + HGFR FST+ EH P D IE+QL H G Sbjct: 284 -PNSPLSENTLNHALRSLGVDKQTHVFHGFRSSFSTLAREHCRLPGDLIELQLGHIEGNQ 342 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKV 384 V+ Y+ +Q L++RRE+M W+ +L E Sbjct: 343 VKAAYDRSQRLEERRELMDKWSKYLAELA 371 >UniRef50_A4Y9I4 Phage integrase family protein n=3 Tax=Shewanella RepID=A4Y9I4_SHEPC Length = 432 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 98/410 (23%), Positives = 169/410 (41%), Gaps = 33/410 (8%) Query: 3 TVKQIEA-AKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTV--GKYPLMT 59 KQI++ K KE R G+GLY+ V G W++RY ++GK + + G YP M+ Sbjct: 12 NDKQIKSFLKSKE-LGRKAVGDGLYIRVQTEGVAYWEVRYSVNGKRRSMVPNGGVYPAMS 70 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN--NSFSAIYKEWYEHKKQVWSVGYATELA 117 L EA+ +A + GIDP+ ++ + + ++ +WY+ + Sbjct: 71 LVEAKAEAAKVKLLAKQGIDPLAERERQQEITIKTVNDLFDDWYQCTAPRLK--HPEIPM 128 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 +M+ DI P IG L++ D+ + ++ + ANK C ++F +A A Sbjct: 129 RMYTKDIKPAIGQLKVTDVNARDIRAILHKVVKSNRPTVANKTLLFCKQLFNHACKLDVA 188 Query: 178 KYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFS--GSIVSLIATKVLRYTALR 234 NPA A G K L ++I A L S + +A +L +R Sbjct: 189 SGNPAAAFNTADAGGLEKNRTRVLSLNEIAAAFPVLRNSRPIFSHENYLAVALLLCLGVR 248 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 EL + W DF+ ++ + K +P+S+ V+E L L I SE+VF Sbjct: 249 KGELIAAKWSEFDFDQQVWRMPKERSKTGVGITIPLSEFVIEWLKELK-IIACGSEYVFP 307 Query: 295 GRN--DKKKPICENAVLLVIKQIGYE------------------GLESGHGFRHEFSTIM 334 R +++ I + + + ++ + + H R T++ Sbjct: 308 ARKASKRREYIANDTLNHALAKLFGQKHDSNKQPFENLLGKAGVEHFTVHDLRRTCRTLL 367 Query: 335 NEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + P E L H G + G YNH YL++RRE + A + + Sbjct: 368 ASLKVPPHIAERCLNHKLKG-IEGTYNHHDYLEERREALDKLAALISPII 416 >UniRef50_B7UP04 Predicted integrase n=24 Tax=Proteobacteria RepID=B7UP04_ECO27 Length = 405 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 170/399 (42%), Gaps = 21/399 (5%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPV-SGKKVWQLRY--KIDGKEKILTVGKYPL 57 +LT + KP +KP GL L+ G+ W RY + K + +G YP Sbjct: 3 VLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPE 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNN---NSFSAIYKEWYEHKKQVW-SVGYA 113 +++ EA A R+ ++ G DP++ KKA S +F+ + + W + + Sbjct: 63 VSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPKHV 122 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + ++ P +G + I + E +R + E A++ ++R V ++ Sbjct: 123 RQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLS-ETASRVKQRIHVVMQWGWA 181 Query: 174 TGRAKYNPAPDLADAMKGYRK---KNFPFLPADQIPAFNK-ALATFSGSIVSLIATKVLR 229 G NP + + + ++ P +P Q+P F ++ T V+ ++ Sbjct: 182 HGFCVANPVDVVDHLLPQKTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMVI 241 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 TA R+ E R M W +DF RI TI A MK R H VP+S Q + +L + + Sbjct: 242 LTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAMHILENIRGLH---D 298 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQ----IGYEGLE-SGHGFRHEFSTIMNEHEWPADAI 344 E VF K++ + + + +++ G + HGFR F +E + D Sbjct: 299 ELVFPSPR-KQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLA 357 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 E LAH V Y+ L++R MMQ WAD++ + Sbjct: 358 ERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ 396 >UniRef50_D0CDZ4 DNA integration/recombination/inversion protein n=4 Tax=Acinetobacter RepID=D0CDZ4_ACIBA Length = 402 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 120/400 (30%), Positives = 192/400 (48%), Gaps = 25/400 (6%) Query: 2 LTVKQIEAAKPKE-KPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLM 58 L+ Q++ AKP K Y+L DG LYL + SG K W Y GK L++G YP + Sbjct: 9 LSALQVKKAKPDPNKMYKLSDGGNLYLRIDQSGSKYWIFNYTRPFLGKRNDLSLGTYPEV 68 Query: 59 TLQEARDKAWTARKDISVGIDPVKAK------KASSNNNSFSAIYKEWYEHKKQVWSVGY 112 +L++AR +K I GIDP + K N+F I + W K+ Sbjct: 69 SLEDARTIRDKYKKLIKQGIDPAMERIETKSQKQKEAENTFRVIAELWL--HKRELEQKQ 126 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLL-EVIRRFEDRGAMERANKARRRCGEVFRYA 171 E + + D+ P I L + L +V +R +RGA+ A + + ++F+ A Sbjct: 127 DEETIRRLNHDVYPYISELTFPQLTLEILETKVFKRIVERGALSVAKRLKSDLNQIFKSA 186 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQ-IPAFNKALATFSGSI-----VSLIAT 225 +YNP D+ + + NFP + +Q + + +S + +A Sbjct: 187 RKKKLIQYNPIEDIE--LPKPQAGNFPAVTEEQDLAPMLNKIWNYSKLYPRCLLTTQVAL 244 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 K+ T R E+R + + E R AS K ++H+VP+SDQ +L+ ++ + Sbjct: 245 KISVLTFQRPGEIRMLKKEFYYREERCFKFTASKTK--QLHIVPLSDQAFDLIESIIDLH 302 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAI 344 P SE++F G D K I +N + +K++GY G ++ HGFR T+++E E D I Sbjct: 303 -PYSEYIFVG-RDGKTVISDNTINSALKRLGYGGEQTAHGFRATARTMLDEILEQRVDFI 360 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E QLAH + YN ++L+ RREMMQ WAD+L+ + Sbjct: 361 EHQLAHKVKDNNGTAYNRTKFLNNRREMMQEWADYLESLL 400 >UniRef50_A1W6C2 Phage integrase family protein n=8 Tax=Burkholderiales RepID=A1W6C2_ACISJ Length = 459 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 107/397 (26%), Positives = 170/397 (42%), Gaps = 29/397 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++ KP R DGNGLYL + + K W RY E + +G + L Sbjct: 7 LTALKVTRL---SKPGRYSDGNGLYLQITKALVKSWIFRYARGTGEHFMGIGPVHTVNLA 63 Query: 62 EARDKAWTARKDISVGIDP--------VKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGY 112 EAR++A AR + G+DP KAK ++N F E+ + K+ W + Sbjct: 64 EAREQARKARLLLRDGVDPLMHRAEALAKAKAVQASNKIFRDCMDEYIKSHKESWRNEKH 123 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + + P+ G + ++ I +L+V+ + E A++ R R V +A Sbjct: 124 QKQWEATLVEYACPVFGKMHVRLINTPLVLQVLEPIW-KTKTETASRVRERIERVLAWAT 182 Query: 173 VTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 G + NPA L K + ++ P LP + AF + LA G ++ A Sbjct: 183 TQGFREGENPARWRGHLQELLPKPSKLKKVRHHPSLPYGHVGAFVRLLAREKG--IAARA 240 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 + TA RT E+ W +D + ++ I MK K H VP+ V LL L + Sbjct: 241 LQFTILTACRTGEVIFAKWNEIDLDAKVWIIPKERMKAHKEHRVPLVRDAVTLLERLRGL 300 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADA 343 +VF G +P+ A+ V++++ + HGFR F T E +P + Sbjct: 301 DP---VWVFPGAKQ-NRPMSNMAMANVLERMQ-RSDITVHGFRSTFRTWAAERTLYPKEM 355 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 E+ LAH G V Y ++RR +M+ WA+W Sbjct: 356 PEMALAHKVGTEVEEAYRRTDLFERRRALMRDWAEWC 392 >UniRef50_C8UI65 Putative integrase n=1 Tax=Escherichia coli O111:H- str. 11128 RepID=C8UI65_ECO1A Length = 352 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 135/273 (49%), Positives = 187/273 (68%), Gaps = 6/273 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L +QI+ AKPKEK Y+L DG GLYL V +G K W+L+Y++ GKEK+L +G YP +TL Sbjct: 3 LNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAGKEKLLALGVYPEVTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K A++ I+ GIDP++AK+ N+F I EW+ K + WS GYA++ Sbjct: 63 DARAKREDAKRGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYASD 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F+ D+ P IG I +I+P++LL V+RR E RGA E+A K R+RCGEVFRYAIVTG Sbjct: 123 ILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIVTG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 RA+YNPAPDL AM+G+ ++PFL A ++P F KAL+++SGS + ++A ++L T LRT Sbjct: 183 RAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGLRT 242 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVV 268 ELR LW +DF I I AS MK R+ H+V Sbjct: 243 GELRGALWDEIDFNKAIWEIPASRMKMRRPHIV 275 >UniRef50_D1D4Y4 Site-specific recombinase n=19 Tax=Neisseria RepID=D1D4Y4_NEIGO Length = 406 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 183/396 (46%), Gaps = 20/396 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ Q++ AKP++K Y+L DG GL L+V +G++ W+L + DG+++ +++G+YP +L Sbjct: 16 LSANQVKNAKPRDKLYKLSDGGGLALWVYPTGRRSWKLSFMQDGRQQTISLGRYPDFSLA 75 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 EAR+ R+ + G + V K + +F + ++W+ + S YA ++ + F+ Sbjct: 76 EAREWREEVRRKRAHGENVVNKK--VRADFAFEKVARDWFVRWSKGRSEKYAGQVMRNFE 133 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 + P IG L+I+ + ++ +R E RG ++ K + VF +A+ +G NP Sbjct: 134 RWVFPAIGNLDIRQVRTADVVGCLRVMEARGIVDTLRKTKNSLKMVFAFAVGSGMMDINP 193 Query: 182 APDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFS----------GSIVSLIATKVLRY 230 + + + + KN L ++P L + V+ L Sbjct: 194 VAQIGSGVFERVKTKNMTALSPSELPRLIDFLEQRNEFAVYAGRVHIHPVTRFCIYWLLL 253 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE 290 T R +E M W +D E + I A K R+ H VP+S + +L + Sbjct: 254 TMTRIREAALMEWSELDGE--VWRIPAERKKERRGHDVPLSRAMRWVLDQARGLN-VNGR 310 Query: 291 FVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLA 349 FVF N + I + + + +++ G + + HG R T + E + D E LA Sbjct: 311 FVFESVNFQG-HINKESPHVAMRRSGLDT--TAHGLRSLARTYLREVLKVYNDVAEKLLA 367 Query: 350 HANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 H+ G + YN ++ ++R++ + W + + + Sbjct: 368 HSLGTRTQTAYNRSELWEERKDAPERWGNDVLRLAD 403 >UniRef50_B7UT12 Predicted P4-family integrase n=26 Tax=Enterobacteriaceae RepID=B7UT12_ECO27 Length = 411 Score = 330 bits (846), Expect = 7e-89, Method: Composition-based stats. Identities = 114/411 (27%), Positives = 169/411 (41%), Gaps = 38/411 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLR----YKIDG------KEKILT 51 L+ + K E Y + + +GLYL + + + W L +I+ + + Sbjct: 11 LSGLVVSRLK-SEGMYAVGNVDGLYLRIR-NQSRAWVLCVAMGTRINNLGRTVPRRLNMG 68 Query: 52 VGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKAS--------SNNNSFSAIYKEWYEH 103 +G YP ++L EARDKA RK I GI+P++ K +F+ +E E Sbjct: 69 LGPYPEVSLAEARDKARELRKQIRNGINPLQEKHEQKARQEILARKKKTFAECCEEVLEV 128 Query: 104 KKQV-WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR 162 K + + + + P IG + +I + LL ++ E A++ R Sbjct: 129 KDSEMKNKKHLAQWRSTLETYAYPFIGKKAVSEITKVDLLAILEPIW-LTKNETASRLRG 187 Query: 163 RCGEVFRYAIVTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALAT 214 R V YA + NPA L K K+ LP +QI +F K L Sbjct: 188 RIETVIDYAKAKEYFEGDNPAAWKGMLKPLLPQPSKVQITKHHAALPYNQIGSFMKELRE 247 Query: 215 FSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQV 274 SG VS A + TA R+ E+R W +D E + TI AS MK K H VP+SD Sbjct: 248 RSG--VSPRALEFAILTAARSGEIRGAEWSEIDLEGKTWTIPASRMKAAKEHRVPLSDAA 305 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM 334 V LL L FVF + + + A+L V+K++GY + HGFR F Sbjct: 306 VALLKALPRFKGIS--FVFPATRKGQ--LSDTALLAVLKRMGYTD-LTQHGFRSTFRDWA 360 Query: 335 NE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E +P + IE LAH Y KR +M W+ + V Sbjct: 361 GETTNYPREVIEHALAHQLADKAEAAYQRGTLWPKRVALMDEWSGFCLANV 411 >UniRef50_B5KC37 Putative phage-related integrase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KC37_9RHOB Length = 385 Score = 329 bits (845), Expect = 9e-89, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 144/388 (37%), Gaps = 19/388 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT I AKP +K Y L D GL L V SG K W + + +G+ T G+YP +T Sbjct: 9 LTELAIRKAKPADKRYDLFDASVRGLGLRVATSGTKSWFMMRRFNGRMLRTTFGRYPDLT 68 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L AR KA D+S G+ + + F + EW KK ++ Sbjct: 69 LANARLKAPNVLADMSDGL-----TQGQRKTDLFKVVLDEWL--KKDQAKNKSVHQVRVA 121 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 LP G + + I + +I + D G+ AN+ F + + Sbjct: 122 MYKHALPAFGPMPVASITKRDVNRLIDKIVDAGSPVAANRVLAFTKRFFSWCKERDILEL 181 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 +PA + K L ++I F A ++L T R +E+ Sbjct: 182 SPAEAIRPP--SKEKTRDRVLTLEEIKGFWAACDQMGYPWGP--IFQLLLLTGARLREVS 237 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 W V + + + A K + H + +SDQ + ++ L + + +F N Sbjct: 238 QASWGEVSIADGTLNLPARRTKNGRAHQIQLSDQAINIIQALPKVEGQ--DLIFT-TNGT 294 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGS--V 356 + V + I H R F+T E + L H G V Sbjct: 295 TAVSGFSKVKKRLDIISGVADWRFHDLRRSFATHSTERLGISPVVADKILNHVTGQVRGV 354 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDEKV 384 IY H +YL++RR +Q W +++ + Sbjct: 355 AAIYQHGEYLEERRASLQKWGNFIQGLI 382 >UniRef50_Q2NDX8 Site-specfic recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDX8_ERYLH Length = 396 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 106/388 (27%), Positives = 164/388 (42%), Gaps = 18/388 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + +A K + R DGNGL L V SG K W LR + DGK + + +G + Sbjct: 15 LTAVKAKAIK---EAGRYSDGNGLQLVVKASGAKSWILRVQHDGKRRDIGLGPLSEVGPA 71 Query: 62 EARDKAWTARKDISVGIDPVKAK----KASSNNNSFSAIYKEWYEHKKQVWS-VGYATEL 116 EAR+KA ARK I G DP K + S +F + +++ K W + + Sbjct: 72 EAREKAVEARKVIRGGGDPSGLKSGSGRISGRPPTFRELATSYHDDHKSSWKNAKHREQW 131 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 D PI G + ++ +L+ ++ + E A + +R V YA G Sbjct: 132 LSTLDTYAFPIFGDQPVDRVDSRDVLDCLKPIWNA-KPETARRVLQRVLRVLNYAHGMGH 190 Query: 177 AKYN-PAPDLADAMKGYR--KKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 ++ P + A+ R ++ LP ++P L SG V +A + TA Sbjct: 191 REHEAPTQSIRAALGKQRSQVRHHASLPYAEMPELMAKLEAASG--VGAMALRFAILTAA 248 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R+ E+R W +D + T+ A MK R+ H VP+S + +L + K FVF Sbjct: 249 RSGEVRGAQWNEMDLAKKTWTVPAERMKARRAHAVPLSPAALAILEDAKGLRKKPEGFVF 308 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQLAHAN 352 + + + +L I+ + + HG R F E PA A E LAH Sbjct: 309 PS--SRGIALSDMTLLKAIRAASDQN-TTVHGCRTSFRVWAAEKTSCPAAAAEAALAHTI 365 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWL 380 Y+ YLD RR++M W +L Sbjct: 366 HNKAEAAYHRTDYLDIRRQLMADWGAFL 393 >UniRef50_A1AQ50 Phage integrase family protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ50_PELPD Length = 427 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 88/414 (21%), Positives = 159/414 (38%), Gaps = 44/414 (10%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTV--GKYPLMT 59 T K I + KP +K Y +G G + V SG+K W Y DG++K + + G YP ++ Sbjct: 7 FTDKFIMSLKPADKEYWKREGQGFSIRVYPSGEKAWYFIYTFDGRKKYMRLKDGGYPDVS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASS----NNNSFSAIYKEWYEHKKQVWSVGYATE 115 L +AR+ A+ + GIDP+ + + + E+ + + G+ E Sbjct: 67 LADAREAFDIAKVKLKNGIDPLAELEQARLDRKHTPFVKEFVDEFIRIYCKENNRGW-KE 125 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + +I+P G ++ DI+ L+ V+ ++RGA AN+ ++F +A+ Sbjct: 126 IERALKSEIVPRWGKRKLTDIKRRDLVLVLDEIKERGAPVMANRILAYTRKMFSWALERA 185 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 + NP ++ L +I F L S A K++ T R Sbjct: 186 ALEVNPFLMMSRP--NDETSRERVLSEKEIKTFWHNLDECKMSDSIKRALKLILVTGQRP 243 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295 E+ M +D E I A+ K ++ H V ++ +L+ S F+F Sbjct: 244 GEIIGMHRNEIDGE--WWEIPAARSKNKQAHRVFLTITAKQLI-------GDASGFIFES 294 Query: 296 RNDKKKP-----------------------ICENAVLLVIKQIGYEGLESGHGFRHEFST 332 + KP + VI ++ + H R +T Sbjct: 295 PANPAKPDETPPKPAKPYEVRTMTHDIKQNLPHTPHSKVIDRLKVP-HFTPHDLRRTAAT 353 Query: 333 IMNEHEWPADAIEVQLAHANGGS--VRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E E D I+ H V +YN Y ++++ ++ W L+ + Sbjct: 354 RWAEMEITGDMIDRLQNHITRQKQGVGHVYNRYSYAREKQQALEAWEQKLNSII 407 >UniRef50_Q0I233 Phage integrase n=5 Tax=Pasteurellaceae RepID=Q0I233_HAES1 Length = 434 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 168/388 (43%), Gaps = 26/388 (6%) Query: 17 YRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMTLQEARDKAWTARKDI 74 Y L DGNGL+L V +SG K+W+ Y K +++GKYP ++L +AR + Sbjct: 42 YPLRDGNGLFLSVEISGSKIWRFNYYKPYTKKRTEISIGKYPEISLLQARKIRDEYLALL 101 Query: 75 SVGIDPVKAKKASS-----NNNSFSAIYKEWYEHKKQVW--SVGYATELAKMFDDDILPI 127 + IDP + N+F + +WY + + + I P Sbjct: 102 AQNIDPKTHRDQKQNTQALERNTFKYVCAKWYAEIYPTKAPNEDTRARNWQRLERHIFPK 161 Query: 128 IGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLAD 187 + + + +I P L++V R GA +K R Y I G + + D Sbjct: 162 LAEIPLSEITPRLLIDVYREI---GASNTLDKLHRLVKATLDYGIKLGIIEGHNCNLAKD 218 Query: 188 AMKGYRKKNFPFLPADQIPAFNKALATF----SGSIVSLIATKVLRYTALRTKELRSMLW 243 KN P + ++P KA+ T +L A + T LR KEL + W Sbjct: 219 DFIAPLAKNHPAITPAELPELLKAINTAFKEGKLEFNTLFAFNLTLLTGLRQKELTRIEW 278 Query: 244 KNVDFENRIITIDASVMKGRK-------IHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 +D N+++ I + MK + H++P+S Q+++L+ T+ S ++F Sbjct: 279 AFIDDGNKLLIIPSENMKQTRKLREQPKDHIIPLSSQMIKLIGTIRQFNG-SSPYLFPRV 337 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH--ANGG 354 ++ K I + V ++ GY + HG R F + +++ + E+ +AH G Sbjct: 338 RNRNKTIGLDTVSNALRDNGYRDKQDAHGLRVVFRSYLSQIGFSVVVGELAIAHNSTGKG 397 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDE 382 ++ IY+ YL++R++ Q W D+ ++ Sbjct: 398 KIQAIYDRYDYLEERKQAYQAWGDYCEK 425 >UniRef50_B7KUI7 Integrase family protein n=1 Tax=Methylobacterium chloromethanicum CM4 RepID=B7KUI7_METC4 Length = 414 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 93/404 (23%), Positives = 152/404 (37%), Gaps = 26/404 (6%) Query: 1 MLTVKQIEAAKPK-EKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 +LT + +E AKP K + D GLYL V +G K W +RY+ GK + LT+G YP Sbjct: 3 VLTARAVELAKPDPGKRREVPDAALPGLYLVVQPAGGKSWAVRYRAAGKPRKLTLGPYPR 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVG 111 + L +AR+ A TA ++ G DP K+A+ F A+ ++ E + + Sbjct: 63 LGLADAREAARTALHAVAEGRDPAGEKQAARVEVAAVQTMRFGAVAADYIERYAKPRNRS 122 Query: 112 YATELAKMFDD--DILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 + E D +++ I + + + RGA AN+ F Sbjct: 123 W-RETESFLTRTLDATDKWQEKDVRAIGRKDVRDALDAVVARGASIHANRLFAALRRFFA 181 Query: 170 YAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 + + G +P L L ++ A KA + ++L Sbjct: 182 WTVERGILDASPMAGLKPP--SPEISRDRVLTDAELVAVWKAAGEVGYPFGPV--VQLLI 237 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 T R E+ W+ D + TI K + HVVP++ Q V++L + S Sbjct: 238 LTGQRRSEVVEAEWREFDLDGATWTIPRERAKNDRAHVVPLAPQAVKILRCIP-CVGTRS 296 Query: 290 EFVFAGRNDKKKPICENAVLLV-------IKQIGYEGLESGHGFRHEFSTIMNEHEWPAD 342 +F + A + + + H R F++ Sbjct: 297 RLLFTTTGETAFSGVSKATDRLQGLSAKHLPEGIEVEPWRLHDLRRTFASGCARLGVAVH 356 Query: 343 AIEVQLAHANG--GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +E L H +G + G+Y Y D+RR M+ WA LD V Sbjct: 357 VVEKALNHVSGTHSGIVGVYQRHSYGDERRCAMELWAAHLDGLV 400 >UniRef50_Q39TC0 Phage integrase n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TC0_GEOMG Length = 414 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 89/419 (21%), Positives = 153/419 (36%), Gaps = 48/419 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSG------KKVWQLRYKIDGKEKILTVGKY 55 + K I+ KP+ K Y + + G + V SG K + Y I+GK K L +G Y Sbjct: 5 FSDKFIQNLKPEAKKYYIRESRGFAIVVHPSGIKNPKGTKTFLYIYTINGKRKELKLGNY 64 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVK----AKKASSNNNSFSAIYKEWYEHKKQVWSVG 111 P +TL++AR K A + G DPV + N +F + + + K S Sbjct: 65 PEVTLKDARIKHGEAYARLVNGEDPVTPPVIKAEPQDENLTFGHFTELYLQWSKDNHSPK 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + + + D LP+ I I+ + + RG + + VF YA Sbjct: 125 WHNTIKCALNKDALPVWEYTLIASIKRRDAIAFLENVARRGI--QVINLHKATSSVFDYA 182 Query: 172 IVTGRAKYNPAPDLADAMKG--YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 + + NP L K FL +I KA+ G + A K++ Sbjct: 183 LEREYIESNPMAGLKAKTIPALKPKARERFLSDSEIKHVWKAIDEGPGYDETKRALKLIM 242 Query: 230 YTALRTKELRSMLWKNVDF-----------ENRIITIDASVMKGRKIHVVPMSDQVVELL 278 TA R E+ +M + + TI A MK + H + ++ +EL+ Sbjct: 243 VTAQRPGEVAAMHRREIQTGVGKPRCKICKRCGWWTIPAERMKNGEEHRIYLTPTALELI 302 Query: 279 TTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL--------------ESGH 324 ++F D +PI N++ ++ + + H Sbjct: 303 -------GDAEGYIFPSPQD-GQPINRNSLSQLVSRERNNKKPNGEMYPPYYGLPEWTPH 354 Query: 325 GFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 R T++ P + E L+H G V YN Y+++++E + L + Sbjct: 355 DLRRTARTLLARVGVPEEHAEEVLSHKKEGLVDR-YNRHDYMEEKKEALIKLEAELMKL 412 >UniRef50_B7XGJ8 Integrase n=9 Tax=root RepID=B7XGJ8_PSEPU Length = 419 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 171/394 (43%), Gaps = 26/394 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT K ++ ++P DG GL L V + +K W RY + + L +G +P ++L+ Sbjct: 4 LTPKFVKDV---DQPGSYQDGRGLILRVSATLRKSWVFRYMLAKQRHDLALGTFPALSLR 60 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN--------NSFSAIYKEWYEHKKQVWSVGYA 113 +AR +A R DI+ G+DP + ++F A + + WS + Sbjct: 61 DARLEADKYRLDIARGVDPAAERAKVKAAKASRTTTSHTFRASAERYIRTHSSSWSKKHH 120 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + P IGG I +++ +L+V+ + AN+ R R V A Sbjct: 121 QQWQNSLTKHVYPAIGGFRIAEVDTDDILDVLTPIWSK-IPVTANRVRNRIELVLDAAKA 179 Query: 174 TGRAK-YNPAPDLADAMKGYRKKNFPFL-----PADQIPAFNKALATFSGSIVSLIATKV 227 + NPA K K++ + + L + GS + A + Sbjct: 180 LKLRQGENPARWRGHLDKLLPKQSHTVVPFPSPTPLRTAELLARLDSLDGS--AARAVEF 237 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 TA R +E+ W +D+E +I I A MK K H VP+++Q++E+L Sbjct: 238 AILTATRNQEVSGAQWPEIDWEEKIWYIPAERMKAGKAHRVPLTEQMLEVLRQQ---VGK 294 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPADAIEV 346 +++F + + PI NA+ V+ Q+ +G+ HGFR F T E + + E+ Sbjct: 295 HDKWIFLN-SWRTGPIPGNAMARVLDQLQVDGV-VPHGFRSTFRTWAAEETDHQREVCEM 352 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 LAH V YN LDKRR +M+ W D+L Sbjct: 353 ALAHTLNSKVEAAYNRGDLLDKRRALMKDWGDFL 386 >UniRef50_A8EWJ5 Phage integrase n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWJ5_ARCB4 Length = 410 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 100/405 (24%), Positives = 190/405 (46%), Gaps = 26/405 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L Q++ AKP ++ Y L DG GLYL V + K+W+ RY +GK K + YP ++L+ Sbjct: 7 LQDIQVKQAKPTKETYYLFDGLGLYLEVTPNNAKIWKFRYTYNGKRKKTSFQSYPKVSLK 66 Query: 62 EARDKAWTARKDISVGIDPVK------AKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K + + GIDP++ K + +SF I+ +W E +K + Sbjct: 67 QARKKRDNYNELLFDGIDPIEYYKEQKELKQIEDTSSFKNIFTQWLEMEKSKSGLAQYQW 126 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 ++DILP IG +I+DI+ + V+ +++ A A+K ++ YA G Sbjct: 127 KKTRIENDILPFIGNKKIKDIKIQDVTNVLIE-KNKTAPVTASKLFGYLKSIYSYAKTKG 185 Query: 176 RAKYNPAPDLAD--AMKGYRKKNFPFLPADQ-IPAFNKALATFSGSIVSLIATKVLRYTA 232 + N D+ + + ++P + + + ++ + G A K++ + Sbjct: 186 YIEINLLSDINKTHIISSSQVISYPKITEKENLKDLVNSIYNYQGFYSVKNALKLVLHLP 245 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVELLTTLSSITKPV 288 LR L ++ W N+DF+N+++ I MK + +P++D+V+ +L S T Sbjct: 246 LRAGNLCNLQWSNIDFDNKLLIISRDEMKVKDKNFDDFRMPLTDEVINILNEQKSYTGYQ 305 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEG-----LESGHGFRHEFSTIM----NEHEW 339 +F+F G N++ PI + +K +G++ + HGFR F +++ + + Sbjct: 306 -KFIFLGTNNR-TPINVESPNKALKIMGFDDEVNGRKITLHGFRGTFRSLIDTLDIDSNF 363 Query: 340 PADAIEVQLAHANGGSVRGIYNH-AQYLDKRREMMQWWADWLDEK 383 + E L H V Y H + Y+++ +M +W+D++ Sbjct: 364 SFETKERALDHHEKSKVVRAYTHKSDYINQLIPLMNFWSDYILSL 408 >UniRef50_B8ERI0 Integrase family protein n=1 Tax=Methylocella silvestris BL2 RepID=B8ERI0_METSB Length = 400 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 99/394 (25%), Positives = 160/394 (40%), Gaps = 18/394 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT+K I A KP+ K + DG+ GLY V SG K W R+ +GK K LT+G YP + Sbjct: 5 LTIKGIAALKPQAKRCEVPDGHTRGLYFVVQPSGAKSWAYRFSFEGKPKKLTIGSYPAID 64 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKE--------WYEHKKQVWSVG 111 L AR A + ++ G +P KK + +H + Sbjct: 65 LSRARSIALASATKVANGRNPAAEKKVEREKARKPSDLDLVDVVVAQFVVKHVEPKTRPQ 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 A E+ ++ +IL G + +I + +++ DR A AN+ + ++ Sbjct: 125 SAKEMKRILKREILSRWSGRRLTEITRSDIRDLLEAIADR-APIMANRVFEVISSLINWS 183 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 I +P L R L ++ +A S KVL + Sbjct: 184 ISMEMLSASPIAGLRKPSPAKR--RDRILSEKELTDVWQASERAGWPYGS--MIKVLILS 239 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 R E+ M W +DFE R T+ A K K H++P+S ++++L TL I S F Sbjct: 240 GQRRSEVSDMTWSEIDFEERSWTLPAVRTKNGKGHIIPLSPTIIDVLLTLPRI-GSESGF 298 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF ++ E + H R F+T M + +E L H+ Sbjct: 299 VFTTNGFSPIRNFARRKKALMMSCQSENNWTLHDLRRTFATGMARLKVELPVVEKLLNHS 358 Query: 352 NG--GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +G G V+G+Y + ++RE M WA ++++ Sbjct: 359 SGTFGGVQGVYQQYDFQSEKREAMNLWASYVNKI 392 >UniRef50_D2LD60 Integrase family protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LD60_RHOVA Length = 427 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 168/401 (41%), Gaps = 24/401 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LTV+ +E +P + DG GLY SG K W +RY++ G+ + LT+G YP + Sbjct: 5 LTVRALENMRPGASRREIPDGIIQGLYFVHQPSGAKSWAVRYRVGGQTRKLTLGTYPAIG 64 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNS-------FSAIYKEWYEHKKQVW-SVG 111 L+ ARD A TA ++ G DP KAKKA+ A+ + E + Sbjct: 65 LKPARDLASTALAAVARGEDPAKAKKAAKEKEKAAPARDFVEAVAASFIERHSKQKNKET 124 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + E ++ +I+P+ G ++ DI + EV+ +RG AN+ ++ +A Sbjct: 125 HIRETERILQREIVPVWKGRKLGDITRADVHEVLDAIVNRGCPTMANRTLSTVRKMCAWA 184 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + +P + K L D++ A A L K+L T Sbjct: 185 VDRSFIAVSPCHGIKAP--ASEKSRDRLLSEDEMRAAWLAFEATGWPFGPLA--KLLLAT 240 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 A R E+ M W +DF+ RI TI A+ K + H VP+S+ + +L L + VS++ Sbjct: 241 AQRRDEVADMRWSEIDFKTRIWTIPAARSKNGQAHEVPLSEAALAILDGLPHVAG-VSDY 299 Query: 292 VFAGRNDKKKPICENAVLLVIKQI------GYEGLESGHGFRHEFSTIMNEHEWPADAIE 345 VF A +QI G G + H R ++ M + P ++ Sbjct: 300 VFTTTGKTPVSGFSRAKKAFDEQITRQLGEGIPG-WTLHDLRRTAASGMTALKSPPHVVD 358 Query: 346 VQLAHANGG--SVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 L H +G V +Y Y ++R + W +L + Sbjct: 359 AVLNHKSGTIKGVSAVYMRYGYAAEKRTALDAWGHFLTTII 399 >UniRef50_D1Y3S1 Site-specific recombinase, phage integrase family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3S1_9BACT Length = 433 Score = 326 bits (838), Expect = 7e-88, Method: Composition-based stats. Identities = 113/404 (27%), Positives = 199/404 (49%), Gaps = 29/404 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG-KEKILTVGKYPLMTL 60 L + IE + K+ PY L DG GLYL V +G+KVW RY+ +G +E+ +T+G+YP + + Sbjct: 3 LNITAIERSTGKDAPYLLNDGGGLYLKVCPNGRKVWLYRYRDEGERERKVTLGEYPALDM 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEH-KKQVWSVGYATELAKM 119 AR++ R I G P + +F + + WYE KK+ + Y + + Sbjct: 63 AAARERKEATRARILRGEAP-----QDTALLTFEQVARRWYEKQKKRGLAPRYLETIRQR 117 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + ++P +G ++ I+ +L+ V+ RG +E +++ ++++YA G Sbjct: 118 LECYLIPPLGARPLEQIQRAELVAVVEGVAKRGIVESSHRVGVILSQIYQYAEDAGILPG 177 Query: 180 N---PAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235 A L+ + + ++F + + + + + + G VS + + T +R+ Sbjct: 178 GGALAAASLSRVLPKTKTEHFATVSKPEDVRQVMECIRDYRGFAVSR-CLEFIALTFVRS 236 Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE-FVF- 293 E R W+ +D E R+ TI A MK R H VP+S Q + LL + ++ E +F Sbjct: 237 GEARRARWREIDLEARLWTIPAEHMKRRIAHKVPLSRQALALLEEMKPLSCSGPESLIFV 296 Query: 294 ---AGRNDKKKPICENAVLL----VIKQ------IGYE--GLESGHGFRHEFSTIMNEHE 338 GR+ + + ++L +K+ G + + HG R STI+NE Sbjct: 297 SGLTGRSSSSGILTDMSLLRPFREALKRNPERAAAGLKPFPKMTVHGLRSMASTILNEER 356 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 + IE+QL+H + +R IYN+++ LD RR +MQ+WADWLD Sbjct: 357 QGGELIEIQLSHLDADRIRLIYNNSELLDDRRALMQFWADWLDN 400 >UniRef50_B2TTV9 Site-specific recombinase, phage integrase family n=25 Tax=Proteobacteria RepID=B2TTV9_SHIB3 Length = 439 Score = 326 bits (837), Expect = 8e-88, Method: Composition-based stats. Identities = 106/405 (26%), Positives = 167/405 (41%), Gaps = 27/405 (6%) Query: 2 LTVKQIEA-AKPKEKPYRLLDGNGLYLYVPVSGKK-VWQLRYKIDGKEKILTVGKYPLMT 59 LT QI A K E+ DGNGLYL + K W+ RYK+ GK + + +G Y ++ Sbjct: 24 LTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFRYKLAGKSRAMLIGSYSELS 83 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK-----------ASSNNNSFSAIYKEWYEHK-KQV 107 L +AR+ A +++G D K+ A N S + E++E + Sbjct: 84 LSKARETAKELSARVALGYDVAGEKQKHKTEALAKMEAEKNAMRVSELAAEYFERQILPR 143 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 W + L + D DI P IG ++++D++P + ++++ DRGA A R + Sbjct: 144 WK--HPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLKGIVDRGAPTIATDVLRWTRRI 201 Query: 168 FRYAIVTGRAKYNPAPDLADAMKG-YRKKNFPFLPADQIPAFNKALATFSG-SIVSLIAT 225 F Y I + NP A G +L D++ KA+ T G S + I Sbjct: 202 FDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRDELIQLFKAMRTAKGFSRQNEITF 261 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 K+L +R EL + W+ D + + + K +P+ VE L L + + Sbjct: 262 KLLLALCVRKMELCAARWEEFDLDGAVWHLPEERSKNGDPIDIPLPSPAVEWLRELHTFS 321 Query: 286 KPVSEFVFAGRNDKKKPIC-------ENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 S +V R + + I A+ V ++ + H FR T + Sbjct: 322 -CNSAWVLPARKMQNRMIPHIQESTLPVALAKVRAEMPDVPNFTIHDFRRTARTHLAALG 380 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 E L H G V GIYN QY D+R+ + WAD L Sbjct: 381 VDPVVAERCLNHRIKG-VEGIYNRHQYFDERKAALAQWADLLVAL 424 >UniRef50_C7JAN4 Phage integrase n=17 Tax=Acetobacteraceae RepID=C7JAN4_ACEP3 Length = 404 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 102/398 (25%), Positives = 162/398 (40%), Gaps = 28/398 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 LT +Q+ A K L DG GL+L V K W R+ I + + +G ++ Sbjct: 9 LTARQVSAL----KGGSLCDGGGLWL-VAQGAAKSWFFRFTSPISNTRREMGLGSVHDLS 63 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWS-VGY 112 L E R KA AR ++ G+DP+ ++ +FS I K + + W Sbjct: 64 LAEVRRKATEARHLVAAGLDPIDERRKLKAQRKKESGLTFSDIAKRYVKEMAPGWRNARS 123 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 +T + + P +GG + +IE +L V+R + E A++ R R + +A Sbjct: 124 STVWTSSLERHVFPAMGGKLVSEIETEDVLAVLRPIW-KTTTETADRVRGRIERILDFAR 182 Query: 173 VTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 G NPA L + ++ P + I LA G +S A Sbjct: 183 THGWRDGENPARWRGHLANILPKPSAVAKARHLPAVNRKDIGKVMAKLAQAEG--ISPKA 240 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 + TA R+ E+R +W +D +I TI A MK K H VP+S + +L + Sbjct: 241 VRFACLTAARSGEVRQAVWSEIDLVTKIWTIPAHKMKAGKEHRVPLSAGAIAVLQEVLPF 300 Query: 285 T-KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPAD 342 K + VF G + +P+ + + + + HG R F E ++P + Sbjct: 301 RDKRAGDLVFPG-GKRGRPLSDVVLSKALHSAAGTKDVTVHGLRSTFRDWAAEETDYPGE 359 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 E+ LAH V Y +KRREMM W D + Sbjct: 360 VAEMALAHTISDKVEAAYRRGDLFNKRREMMTAWNDKM 397 >UniRef50_A3VAJ4 Site-specific recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VAJ4_9RHOB Length = 392 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 157/391 (40%), Gaps = 17/391 (4%) Query: 1 MLTVKQIEAAKP-KEKPYRLLD--GNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 MLT K ++A P K Y + D NGL++ V +G KV+ + +G + + +G YP+ Sbjct: 10 MLTTKSLDAMPPATTKRYEVRDQKVNGLHVRVSTTGAKVFYTLVRPNGSRRRIKIGPYPV 69 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELA 117 ++L +AR +A +D+ +G + ++ ++ + ++ E + + + Sbjct: 70 VSLADARRRAMEIARDVELGEFEKTPEVPEASADTLGEMIPKFIELHAKPNTKDW-KRTE 128 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRA 177 + + I I + +V+ G RAN+A ++ + ++ G Sbjct: 129 SVL--HKFDGLKDRPIDQIRRQDVSKVLDGIIANGTPTRANRALSAIKKLMNWCVMRGDI 186 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 + +P L + L +I A + K+L + R E Sbjct: 187 ETSPVALLRPP--TREVQRDRVLSDAEIRAIWQHSDAEDYPFGP--FLKLLLISGQRRSE 242 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 + M W ++ + I + A+ +K ++H+VP+ Q V++L L S+FVF Sbjct: 243 VAGMRWSELNLDEGIWELPANRVKNARLHIVPLPVQAVDILRGLHRFL--DSDFVFT-TT 299 Query: 298 DKKKPICENAVLLVIKQIGYEG--LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG-- 353 + + + EG H FR ST M + I+ H +G Sbjct: 300 GRSAISGFGRLKERVDTALPEGTPDWRFHDFRRTASTGMAKLGVMPHVIDAVTNHKSGVV 359 Query: 354 GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 V YN Y +++RE + WA +DE + Sbjct: 360 SGVGATYNRYTYFNEKREALAQWAAHIDEIL 390 >UniRef50_Q0BR52 DNA integration/recombination/inversion protein n=6 Tax=Alphaproteobacteria RepID=Q0BR52_GRABC Length = 380 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 108/357 (30%), Positives = 181/357 (50%), Gaps = 15/357 (4%) Query: 39 LRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYK 98 ++Y+ GKEK+L+ G YP ++L EAR + A+ + G DP +F + Sbjct: 1 MKYRYGGKEKLLSFGAYPGVSLAEARLRRAKAKVVLGEGGDPGA-GNKPRTQMTFEEAAR 59 Query: 99 EWYEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERAN 158 +W+ H+ G+AT L + D P++G L + I P +L ++RR E RGA++ + Sbjct: 60 KWHGHRLDALDAGHATRLLTRLERDAFPVLGKLGLSVITPTDVLAMVRRVEARGALDVSR 119 Query: 159 KARRRCGEVFRYAIVTGRAKYNPAPDL-ADAMKGYRKKNFPFLPADQIPAFNKALATFSG 217 + ++ +++R+AI G A+ +PA L R ++ P + ++PA +A+ + G Sbjct: 120 RLKQHVSQIYRFAIAHGWAERDPAEHLGQLLKPKPRTRHMPRIGRSELPALIRAIDGYDG 179 Query: 218 ------SIVSLIATKVLRYTALRTKELRSMLWKNV-DFENR--IITIDASVMKGRKIHVV 268 V+ A T +RT E R W+ D + + + A MK + HVV Sbjct: 180 EETPRRRAVTRAALLFTLLTWVRTNETRHARWEEFEDLDGASPVWRVPAERMKMVREHVV 239 Query: 269 PMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRH 328 P++ VV LL + + ++++VF G +PI +N ++ ++GY G ++ HGFR Sbjct: 240 PLAPAVVALLQEVRVYS--LADYVFVGEK-PDQPISQNTMIYACYRMGYRGRQTVHGFRG 296 Query: 329 EFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ST NE E + D IE+ LAH VRG YN A YL RR M++ WA ++ + Sbjct: 297 LASTWANEAECYQPDWIEMALAHVERDEVRGAYNAALYLSPRRRMLEDWAGFIQSHL 353 >UniRef50_Q2SP99 Integrase n=2 Tax=Gammaproteobacteria RepID=Q2SP99_HAHCH Length = 416 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 84/401 (20%), Positives = 161/401 (40%), Gaps = 21/401 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKK---VWQLRYKID--GKEKILTVGKYP 56 L+ +I AK E L DGNGL L + K W RY+ K L++G YP Sbjct: 4 LSDTKIRNAK-TETDTCLSDGNGLSLRIYPKRGKIARTWVFRYRRPATKKPAKLSLGDYP 62 Query: 57 LMTLQEARDKAWTARKDISVGIDP----VKAKKASSNNNSFSAIYKEWYEHKK--QVWSV 110 +++L+ AR +A R+ + G+DP + + ++N + +++ W +K + + Sbjct: 63 VISLRAARQQAEIMRQQLFEGLDPQYVQKEQRAENANAITTQQLFESWLTLQKSAKEVTD 122 Query: 111 GYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRY 170 + + + +G L + + Q+ V+ +G E K +FR+ Sbjct: 123 RTLADHEARWRVHLEKSLGPLLAKHVIRRQIAAVLDSMVAKGIKEETRKCLCLLKMLFRF 182 Query: 171 AIVTGRAKYNPAPDL--ADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 A K NP L LP ++ +F + L + S + + A K+L Sbjct: 183 AEERHLIKENPIEGLSAKSFKITAGAPRDRALPLSELRSFWRLLDSASITPATANAFKLL 242 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 T R E+ M W +D + + K RK H + + + + L+ ++ I+ Sbjct: 243 ILTGARRGEVTMMRWSELDLTQGMWVLPPERTKNRKAHTLYLPNLAMRLIESMRPISGH- 301 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYE----GLESGHGFRHEFSTIMNEH-EWPADA 343 E+V + P+ + + ++++ + H R +T EH + Sbjct: 302 GEYVL-SLGNGITPLSTEGLTVTLRRLSTRLESVPHFTVHDLRRSAATAWGEHLKTSPHV 360 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 IE L H + Y A Y+D+++ + W + ++ V Sbjct: 361 IEKMLNHQPRDRLVATYQRAAYIDEQKMAWKAWGEMVENHV 401 >UniRef50_A7JWM6 Possible bacteriophage integrase n=3 Tax=Pasteurellaceae RepID=A7JWM6_PASHA Length = 404 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 168/396 (42%), Gaps = 18/396 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRY---KIDGKEKILTVGKYPLM 58 L+ ++ K + D NGL++ KVW Y K + +G YP M Sbjct: 8 LSDTLLKNLKYSPNAKPIADSNGLFILAQKK-AKVWIYSYISPKTGKRSTKNRIGSYPQM 66 Query: 59 TLQEARDKAWTARKDISVGIDPVKA-----KKASSNNNSFSAIYKEWYEHK--KQVWSVG 111 +L EAR K + G+DP + ++A S + +W + K K Sbjct: 67 SLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEKQESIQSFAYKWADWKLSKGKCKPK 126 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 + + ++ + P G ++D + + DR + ++ E+ YA Sbjct: 127 TMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRLTDL-DRIMPDTLHRIAGNLIEILDYA 185 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 ++ GR +NP + A + P + +++ F + L + + + + Sbjct: 186 VLCGRINFNPISVIKKAFSSVSTTHQPAIMPEELAEFMQDLQKSNRTPQIKLLVEWQLLN 245 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRK-IHVVPMSDQVVELLTTLSSITKPVSE 290 LR E ++ W ++D+E + + I A MKG K H VP++ Q + +L + + Sbjct: 246 ILRPFEAVAVQWSDIDWETKTLNIPADRMKGGKNPHSVPLTKQAIAILEEMKKYNGH-HK 304 Query: 291 FVFAGRNDKKKPICENAVLLVIKQI---GYEGLESGHGFRHEFSTIMNEH-EWPADAIEV 346 +F R D+ KP V IK++ Y+GL HG R ST ++E IE Sbjct: 305 HIFTHRTDRNKPANSQTVNNAIKRLSGGKYKGLLVAHGLRSIASTYLHERFTTETLVIEA 364 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 L+H N +V Y+ +LD+RR +MQ WAD++++ Sbjct: 365 CLSHTNKDTVMSAYHRKNWLDRRRGIMQEWADFVEQ 400 >UniRef50_B0UGI0 Integrase family protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UGI0_METS4 Length = 413 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 94/414 (22%), Positives = 156/414 (37%), Gaps = 39/414 (9%) Query: 1 MLTVKQIEAAKP-KEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 MLTV+ +E KP E+ + D GLYL V SGKK W +RY+I+ + + T+G YPL Sbjct: 1 MLTVQSVERYKPNPERRLEIPDATLPGLYLIVQPSGKKSWAIRYRINRQPRKFTIGPYPL 60 Query: 58 MTLQEARDKAWTARKDISVGIDP-----VKAKKASSNNNSFSAIYKEWYEHKKQVW-SVG 111 L AR++A A + + G+DP A + S + + E +V G Sbjct: 61 FDLSAARERARQALQMAARGLDPYREKKAAEAAAIEAKDQVSRVVATYVERHLKVKGKPG 120 Query: 112 YATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 YA + + + +LP G I DI ++ ++ DRG AN+ +F +A Sbjct: 121 YAEQAEGLLRNHVLPHWGHRRIGDIGRADVIALVDGLTDRGMTTGANRVFATTRALFNFA 180 Query: 172 IVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + P L + L ++ L ++L T Sbjct: 181 LGRDLITSTPFLGLKPPLPNP--SRDRVLSDAEVR--WAWLCAERIGFPFGPMVQLLLLT 236 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 R E M+W +D + TI + K HVVP+ +E+L + I + Sbjct: 237 GTRRNETGEMVWSELD--GTVWTIPGARTKNSLEHVVPLPPAAIEILAAVPRIAGRPG-Y 293 Query: 292 VFAGRNDKKKPICE-NAVLLVIKQIGYE------------------GLESGHGFRHEFST 332 VF + P + +A ++ + H R ++ Sbjct: 294 VF--TRNGSTPASDLSAGKRRLEAAMLTVAQSEAARRGEDPKAVTIPRWTLHDLRRTAAS 351 Query: 333 IMNEHEWPADAIEVQLAHANG--GSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 M +E L H +G V +YN YL+++R ++ W + Sbjct: 352 GMARLGTDPHVVEAVLNHRSGTISGVAAVYNRYAYLNEKRAALETWGKHVTSLA 405 >UniRef50_Q7MPT5 Site-specific recombinase, phage integrase family n=14 Tax=Gammaproteobacteria RepID=Q7MPT5_VIBVY Length = 434 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 95/404 (23%), Positives = 157/404 (38%), Gaps = 25/404 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT KQ+ A K P + DG GLY V G W +RY + T+G++PLM+L Sbjct: 22 LTAKQV-IAYSKADPKKYSDGEGLYFCVRKQGSPYWMIRYTTAKGRREATLGQFPLMSLA 80 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS--NNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 +AR A RK++ GIDP+ K+ + + ++ +WY + + ++ Sbjct: 81 DARIAAAYFRKEVRDGIDPLLEKQKIELPDIETVDQLFHDWYRTDL-SRRLKHPKIPYRV 139 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + DI P+IG I ++ + EV+ R + AN ++FR+AI Sbjct: 140 YTKDISPVIGIKCIAEVTARDVREVLERIRESNRPTIANDTLMYMKQLFRHAIKLDLTLN 199 Query: 180 NPAPDLA-DAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV--SLIATKVLRYTALRTK 236 NPA D G L ++I T S + +A + +R Sbjct: 200 NPAAAFTVDDAGGVESSKDRMLSKEEIHYAFSVFHTHINSFGRDNYLACCLFLVLGVRKS 259 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 EL +W+ +D + + K +P+ Q + L I S +VF R Sbjct: 260 ELCEAMWREMDLTTGVWDLPKERSKTGVPISIPLPRQAIAWFNELQ-IRACGSPYVFPAR 318 Query: 297 NDKKKP-ICENAVLLVI---------------KQIGYEGLESGHGFRHEFSTIMNEHEWP 340 +P + + + I ++G + H R F ++ Sbjct: 319 RASHRPHMGPDTLNRAISKLFGREPGRKKQPPNKMGKLEHFTVHDLRRTFRSLAASLGIA 378 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + E L H G V GIY+ Y ++RR Q AD ++ V Sbjct: 379 GNVAERCLNHKLKG-VEGIYDRHDYFEERRIAHQTVADVVEPLV 421 >UniRef50_C3MAV8 DNA integration/recombination/invertion protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAV8_RHISN Length = 429 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 96/417 (23%), Positives = 165/417 (39%), Gaps = 38/417 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LTVK IEA K + DG GLYL V +G K W +RY+ GK + +T+G +P ++ Sbjct: 7 LTVKSIEAIKAGSSRREIPDGALQGLYLIVQTTGVKSWAVRYRHAGKPRKMTLGGFPAIS 66 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN-----SFSAIYKEWYEHKKQVW-SVGYA 113 L +AR++A A + +S G DP K A+ E+ V Y Sbjct: 67 LSDAREEARKALRMVSEGRDPATEKAEQEPKRPAHMDLMPALLDEFVTRHVAVKNRPSYV 126 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 E ++ + ++ P ++ + +L+++ DRG+ AN+ R + F +A+ Sbjct: 127 RESKRIVEKNLKPKWKQKLVKTVTKRDVLKLLDEIVDRGSPIMANRVRALLSKFFAWAME 186 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 +P + K L ++I A + + K+L TA Sbjct: 187 RDIVDASPVVSIKAP--SEEKTRDRILTDEEIRFLWLAAEKLAYPFGPV--VKLLLLTAQ 242 Query: 234 RTKELRSMLWKNVDFENR--IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSE- 290 R E+ LW ++ E + I K +K H VP++ +E++ L I E Sbjct: 243 RRTEVSDALWDELELEGNNQLWVISVDRAKNKKEHFVPLTASALEIIEGLPKIKPAEDEK 302 Query: 291 ----FVFA--------GRNDKKKPICENAVLLVIKQIGYEG---------LESGHGFRHE 329 ++F G + K + + + K+ G + H R Sbjct: 303 AKPIYLFTTTGKTPVSGFSKAKTQLDGEMLAIARKEAEERGEDPEGISIEPWTYHDLRRT 362 Query: 330 FSTIMNEHEWPADAIEVQLAHANGG--SVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ++ M P +E L H +G V +YN Y +++R + WAD + V Sbjct: 363 AASGMARLSVPVHIVEAVLNHRSGSIKGVAAVYNRYDYAEEKRAALTAWADEVLRLV 419 >UniRef50_B3AX37 Site-specific recombinase, phage integrase family n=7 Tax=Enterobacteriaceae RepID=B3AX37_ECO57 Length = 440 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 103/405 (25%), Positives = 166/405 (40%), Gaps = 27/405 (6%) Query: 2 LTVKQIEA-AKPKEKPYRLLDGNGLYLYVPVSGKK-VWQLRYKIDGKEKILTVGKYPLMT 59 LT QI A K E+ DGNGLYL P + W+ RYK GK++ + +G Y ++ Sbjct: 24 LTDIQIRAWIKADERFDGKADGNGLYLCYPKNYTMPFWRFRYKFAGKQRAMVIGSYAELS 83 Query: 60 LQEARDKAWTARKDISVGIDPVKAKK-----------ASSNNNSFSAIYKEWYEHK-KQV 107 L AR+ A +++G D K+ A N S + E++E + Sbjct: 84 LSRARETAKELSARVALGYDVAAEKQERKAEALAKMEAEKNAIRVSELAAEYFERQILPR 143 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 W + L + D DI P IG ++ +D++P + E+++ DRGA A R + Sbjct: 144 WK--HPDILRRRIDKDINPRIGHMKAEDVKPRHIDEMLKAIVDRGAPTIATDVLRWTRRI 201 Query: 168 FRYAIVTGRAKYNPAPDLADAMKG-YRKKNFPFLPADQIPAFNKALATFSG-SIVSLIAT 225 F Y I + NP + G +L +++ F +A+ T G S + + Sbjct: 202 FDYGIKRHVLEINPCSAFEVSDAGGKESSRDRWLTREELIRFFQAMRTAKGFSRQNELTF 261 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 K+L +R EL + W+ D +N + + K +P+ V+E L L ++ Sbjct: 262 KLLLALCVRKMELCAARWEEFDLDNAVWHLPEERSKNGDPIDIPLVPPVIEWLKELRVLS 321 Query: 286 KPVSEFVFAGRNDKKKPIC-------ENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE 338 S +V R + + I A+ V ++ + H FR T + Sbjct: 322 -CNSAWVLPARKMQHRMIPHIQESTLPVALAKVRAEMPEVPDFTIHDFRRTARTHLAALG 380 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 E L H G V GIYN QY D+R + W + L Sbjct: 381 VDPVVAERCLNHRIKG-VEGIYNRYQYFDERTSALAKWTNLLVSL 424 >UniRef50_C6E138 Integrase family protein n=1 Tax=Geobacter sp. M21 RepID=C6E138_GEOSM Length = 433 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 88/422 (20%), Positives = 163/422 (38%), Gaps = 52/422 (12%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 + T I KP YR +GNG + V SG K W Y I+GK + + +G YP +TL Sbjct: 7 VFTDTMIRKLKPDTNEYRKSEGNGFTIRVMPSGFKSWLYLYAINGKRRCMGLGHYPDVTL 66 Query: 61 QEARDKAWTARKDISVGIDPVKAKKAS----SNNNSFSAIYKEWYEHKKQ-VWSVGYATE 115 + ARD+ A+K + G+DP+ AK+ + ++ ++ + E Sbjct: 67 ETARDRFEAAKKMVKNGMDPLDAKEEEQEQHRKALTVKQLFDDYLVRHAKLNKRESSWRE 126 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 ++F ++ P G + + I+ +E++ ++ DR + + ++F +A+ Sbjct: 127 DERLFKVNVEPEWGKRKAEHIKKRDCIELLDKYADR--PALCHNVMKLTRKLFNFAVEKD 184 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNK-ALATFSGSIVSLIATKVLRYTALR 234 ++ P + ++ + L +I + L + S K+L T R Sbjct: 185 ILEHTPFTGVKVPVEL--ESRERILTDTEIKKLWRTELPKAAISDEVKQIIKLLLLTGQR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 E+ + VD TI K + H V ++D ++LL K ++ + F Sbjct: 243 VGEVCGITVNEVD--GNWWTIPQERSKNGQTHRVYLTDTAIKLL------GKSINGYYFP 294 Query: 295 GRNDKK--------KPICENAVLLVIKQIGYE-------------------------GLE 321 K K I ENAV I++ + Sbjct: 295 SPVVKNDSDGKPVFKHIDENAVAYAIRKNLKDYQPRRPIKGDRISMVQVPEEKKMSIAHF 354 Query: 322 SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 + H R FST + + + + I+ + H G + IYN +Y ++R+ + W L Sbjct: 355 TPHDLRRTFSTSLAKLGFNDEIIDAVMGHKKQGVI-KIYNRHKYDTEKRQALVAWEKRLL 413 Query: 382 EK 383 Sbjct: 414 SL 415 >UniRef50_UPI0001BCF8EC putative bacteriophage integrase n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF8EC Length = 399 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 151/396 (38%), Gaps = 21/396 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVS-GKKVWQLRYKIDG---KEKILTVGKYPL 57 LT K I + K ++ LY+ + G W ++ + + + +G+YP Sbjct: 6 LTDKIIRSLKSEQIKGDF--VENLYIKANKAAGSFSWLYKFTNPHNKAQRQKIILGRYPR 63 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSN-----NNSFSAIYKEWYEHKKQVWSVGY 112 + AR A + GI P + + +F + + E + Sbjct: 64 TPIDFARKIAMEYNALVKQGIHPTEHQAQQKQQKEIEAMTFKEMTSLYREFRADSVK--N 121 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + + I P G L + I + ++ E G K ++ YA Sbjct: 122 VDDAISRVEMYIFPKFGDLPLNKISLAEWHRTLKPMEA-GKNNTLLKICSTSKQILDYAQ 180 Query: 173 VTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 G +NP L + + + K+ P + ++ F + L + ++ + TA Sbjct: 181 TCGYIDFNPLTTLRASFRKKKAKHNPTIEPKRLAEFIRDLFLSDVERSTKLSIEFQLLTA 240 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R E W +DF+NR+ + A MK K H++ ++ Q + LL + T E++ Sbjct: 241 TRPNETAKAKWAEIDFKNRLWKLPADKMKTGKPHIITLNSQALALLENIRRFTGDR-EYI 299 Query: 293 FAGRNDKKKPICENAVLLVIKQI---GYEGLESGHGFRHEFSTIMNEHE---WPADAIEV 346 F+ K IK I Y + + HG R FST +N I+ Sbjct: 300 FSSSRSKTGHQSTQTANNAIKSIQGGKYHSVLTSHGLRSVFSTYLNGLHDPMIHNVHIDA 359 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH G YNH+ + +++R +MQ W D++++ Sbjct: 360 CLAHVVGNGTSRTYNHSAHEEQKRYIMQKWGDYVEQ 395 >UniRef50_B5J5X2 Site-specific recombinase, phage integrase family protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J5X2_9RHOB Length = 383 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 103/375 (27%), Positives = 172/375 (45%), Gaps = 17/375 (4%) Query: 25 LYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDP---- 80 ++L V SG+KV++L Y++ G ++ +G YP +L +AR KA R D++ DP Sbjct: 1 MFLEVLPSGRKVFRLAYRLAGNQRTKLIGDYPATSLADARLKASAFRLDLNS-SDPEIVE 59 Query: 81 ------VKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATELAKMFDDDILPIIGGLEI 133 ++ + + ++Q + +L + +G + Sbjct: 60 VATRPRQTVTTKKRQTTTWKEVADGYLMMRQQSNPAPKTLRKLNYQIGVTV-DALGNPRV 118 Query: 134 QDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYR 193 +I +L+V+ G +E A++ R R ++FRYA G ++PA DAM R Sbjct: 119 DEITAQDILDVVNPIASSGRVETAHEIRARFSQIFRYAGARGLVTHDPAAFTIDAMIKRR 178 Query: 194 KKNFPFLP-ADQIPAFNKALATF-SGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENR 251 + F + + A+ ++ + + A + Y R ELR M W +D+++ Sbjct: 179 RGEFAGITDPAAVGKLLHAIESYREANPIVGAALMLSAYLFPRNTELRGMRWDEIDWDSL 238 Query: 252 IITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLV 311 + MK + H+VP+ Q ++LL L SE V D K+ + + Sbjct: 239 RWEVPGQRMKMNRDHIVPLPSQAIDLLRFLQKYD-FGSELVLPSPRDPKRMVSDMTFNAA 297 Query: 312 IKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRR 370 ++++G++ HGFR ST +NE W D IE QLAH VR YN AQYLD R Sbjct: 298 LRRMGFKSDRHVHHGFRTTASTNLNEMGWNYDWIERQLAHVPANKVRSSYNKAQYLDGRT 357 Query: 371 EMMQWWADWLDEKVE 385 EMM+ +ADWLD + + Sbjct: 358 EMMRAYADWLDARRQ 372 >UniRef50_A1U0R6 Phage integrase family protein n=2 Tax=Gammaproteobacteria RepID=A1U0R6_MARAV Length = 432 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 179/414 (43%), Gaps = 44/414 (10%) Query: 2 LTVKQIEAA---------KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTV 52 L+ +++ + E Y + +GL L + SG + W LR K+ + + + Sbjct: 8 LSALEVKRLTCRIDPETGEATEVRYPVGGVSGLLLRITPSGSRQWILRAKVGNRRPDMGL 67 Query: 53 GKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNN--------NSFSAIYKEWYEHK 104 G YP ++L +ARDKA ++ I GIDP++ K+ +F +++ + K Sbjct: 68 GPYPEISLAQARDKAREMKEKIRSGIDPLEEKRTLKRALLAEQISTLTFQKAMEKYIKMK 127 Query: 105 KQV-WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRR 163 + + + + +P +G L +++I+ + +V+ + E AN+ R R Sbjct: 128 AKEFRNPRQEKQWTNSLNTYAIPHLGKLPVREIDLPHIKQVLDPIWE-TKTETANRVRAR 186 Query: 164 CGEVFRYAIVTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATF 215 + + + G NPA K ++ +F LP D +P F + L Sbjct: 187 IENILGWCAIHGYRSAENPARWQGYLDEVYPSPEKIKKRGHFAALPVDDMPEFMRDLKKR 246 Query: 216 SGSIVSLIATKVLRYTALRTKEL--------RSMLWKNVDFENRIITIDASVMKGRKIHV 267 +G+ + A + L TA RT E+ + W+ +D ++ T+ A MK KIH Sbjct: 247 TGT--AARALEFLILTASRTNEVIGDKRIGKAGVTWQEIDLARKVWTVPADRMKSEKIHR 304 Query: 268 VPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFR 327 VP++D +ELL + + +F G N + ++K++ E + HGFR Sbjct: 305 VPLTDSAIELLKGMGE--GSPEDLIFPGPKGGIP--SNNFLTALLKRM--ERPITAHGFR 358 Query: 328 HEFSTIMNEHE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 F E + + E+ LAH N + R Y ++ +DKRR MM W + Sbjct: 359 STFKDWARERTAYADEVSELALAHVNSDATRAAYARSELIDKRRLMMADWEQFC 412 >UniRef50_A5PCI3 Phage integrase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PCI3_9SPHN Length = 325 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 167/323 (51%), Gaps = 8/323 (2%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ I+AAK ++KPY+L D +GLYL V +G + W++ Y+ GK+K LT G++P + L Sbjct: 3 LSAVAIKAAKSRDKPYKLADRDGLYLEVSPTGARSWRMNYRYLGKQKTLTFGRWPAVGLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS------NNNSFSAIYKEWYEHKKQVWSVGYATE 115 +AR K AR+ ++ G DP + K + +SF A+ +E+ ++ + Sbjct: 63 DARKKCDAAREVLARGDDPGEQAKLERIAASVASASSFEAVAEEYLAKIEKEGRSSVTMK 122 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + I IG I I +LL +R+ E +G E A + R C ++FRYAI TG Sbjct: 123 KKRWLIGFIDKSIGKRPISAISAPELLLTLRKMEKKGKYETARRLRSTCSQIFRYAIATG 182 Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPAD-QIPAFNKALATFSGSIVSLIATKVLRYTALR 234 RA+ + DL A+ + + P + ++ +++ +F G + IA K++ + +R Sbjct: 183 RAERDVTVDLRGALIVPKAVHRPAITDASKVGGLLRSIESFDGHPTTQIALKLVPHVFVR 242 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR W D + + TI A K R+ H +P+S Q +E++ ++ S F+F Sbjct: 243 PGELRHAEWTEFDLDANVWTIPAEKTKMRRPHAIPLSRQTLEIIASI-EHDADYSRFLFP 301 Query: 295 GRNDKKKPICENAVLLVIKQIGY 317 ++P+ EN + ++++GY Sbjct: 302 SLRSVQRPMSENTINAALRRMGY 324 >UniRef50_B0SXU9 Integrase family protein n=6 Tax=Proteobacteria RepID=B0SXU9_CAUSK Length = 399 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 161/388 (41%), Gaps = 20/388 (5%) Query: 5 KQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEAR 64 I+AAK K P R DG GLYL + G++ W Y K L +G ++L AR Sbjct: 9 TAIQAAKLK-VPGRHSDGGGLYLSIDDGGRRRWVFIYTRGAKRTELGLGGGRDLSLANAR 67 Query: 65 DKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAKMFDDD 123 +A R ++ G+DP + +F A + E + W +A + Sbjct: 68 VEAAAFRTMLADGLDPKVERARDDQAQTFGACADAYVEAMRPSWRNEKHAAQWKMTLTKY 127 Query: 124 ILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR-AKYNPA 182 P I ++++ +L+V++ R E A + R R V A G NPA Sbjct: 128 AAP-IRERPVKELTTQDILDVLQPLWTR-TPETAERLRGRMENVLDAAKAKGLRTGENPA 185 Query: 183 PD------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 L + + + L D IP F L T S V+ A + TA R+ Sbjct: 186 RWRGHLNQLLPKRQRLARGHHAALAYDLIPDFMANLRTR--SAVAARALEFAILTASRSG 243 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+ W D + ++ I A+ MK + H VP+S + +E+ + +VFAG Sbjct: 244 EVLGATWNEFDLDKKVWVIPATRMKAGREHRVPLSARAMEI---AEAQFDDGKGYVFAGP 300 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGS 355 KP+ A+ ++++++ + + HGFR F +E + + E+ LAH Sbjct: 301 K-LGKPLSSMAMAMLLRRM--KSDITVHGFRSSFRDWASETTGFSHEVCEMALAHTIANK 357 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEK 383 Y DKRR++M+ WA + + Sbjct: 358 AEAAYRRGDLFDKRRKLMEAWAGYCATQ 385 >UniRef50_A4A7S2 Phage-related integrase n=1 Tax=Congregibacter litoralis KT71 RepID=A4A7S2_9GAMM Length = 412 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 104/408 (25%), Positives = 167/408 (40%), Gaps = 39/408 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT + + R LD GLYL V G K W RY+ +G+ + L +G YP ++L Sbjct: 8 LTPADCDRIT---RRGRHLDAEGLYLLVARGGSKNWIYRYQHEGRRRELGLGGYPAVSLA 64 Query: 62 EARDKAWTARKDISVGIDPVKAK----------------KASSNNNSFSAIYKEWYEHKK 105 +AR + AR G DP++ + + +F + E+ ++ Sbjct: 65 KARMRRDAARDQRQQGHDPLEVRDRQRAQLRAQMAAETAERERAAMTFLRVADEFIDNNA 124 Query: 106 QVW-SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRC 164 W + + + PI+G + + ++ Q+L+V+ E A + + R Sbjct: 125 AGWTNRKHGQQWRNTLKTYAFPILGVVPVGEVTTDQVLQVLTPIWTE-KTETAKRLQGRI 183 Query: 165 GEVFRYAIVTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAF---NKALA 213 V YA G + NPA L K +R ++ LP + P + Sbjct: 184 ERVLDYATTKGHREGDNPARWRGHLDNVLPRPGKVHRVEHQRALPYLEAPELAAKLTDVD 243 Query: 214 TFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQ 273 T +G + L A RT E W +D + + I A MK K H +P+ D Sbjct: 244 TAAGRALLLTLLC-----ATRTSETLEATWSEIDLDRKEWRIPAVRMKAGKEHRIPLCDA 298 Query: 274 VVELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTI 333 V +L T S ++VF G+ + K + A+ V+K+ + S HG R F Sbjct: 299 AVAVLKTQSVHQGERGDWVFPGQK-RGKCLSNMAMTNVLKRTDWLERTSVHGLRSTFRDW 357 Query: 334 MNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 + E +P EV LAH V+ Y A +++RREMM WA +L Sbjct: 358 VGEKTRYPERMAEVALAHQLTDKVQAAYFRADLMEQRREMMNEWAAFL 405 >UniRef50_Q12EX0 Phage integrase n=5 Tax=Proteobacteria RepID=Q12EX0_POLSJ Length = 410 Score = 320 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 165/386 (42%), Gaps = 29/386 (7%) Query: 16 PYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKD 73 P R G GL+L+V SG + W LR + K + +G YP +TL ARD A AR Sbjct: 19 PGRYAVGGVAGLHLWVKPSGNRSWILRVLVGAIRKDIGLGGYPDVTLAGARDAARRARDQ 78 Query: 74 ISVGIDPVKAKKASS--------NNNSFSAIYKEWYEHKKQVWS-VGYATELAKMFDDDI 124 I G++P++ ++ + +F + E + W + + + Sbjct: 79 ILQGVNPIEQRRQAKALLMADQAKAKTFKDCSAAFIEDRGDEWRNPKHRQQWHNTLETYA 138 Query: 125 LPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR-AKYNPAP 183 P IGGL ++DI +LEV+R + E A + R R V +A V G A NPA Sbjct: 139 FPFIGGLFVRDISLAHVLEVLRPIW-KTKTETAARVRGRIETVLDWAAVRGYRAGDNPAR 197 Query: 184 D-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 L K + ++ + D + F A+ G + A + TA R+ Sbjct: 198 WKGHLDQVLPKPSKVKKVEHHSAVGLDDLAGFIAAVRRVPG--MGARALEFAILTAARSG 255 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+R LW D + + MK + H VP+S Q ++LL ++ S+ VF G Sbjct: 256 EVRGALWSEFDLKAAQWIVPPERMKAGEEHRVPLSKQAIKLLKSIPRFEG--SDVVFCGI 313 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGS 355 K + + + + V++++ HGFR F +E +P + E LAH Sbjct: 314 --KGQVLSDMTLSAVMRRMEVNA--VPHGFRSTFRDWASERTNFPRELAEKALAHTIESK 369 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLD 381 V Y L KR +MMQ WAD+ + Sbjct: 370 VEAAYRRGDLLAKRMQMMQAWADFCE 395 >UniRef50_A9HQA6 Phage-related integrase n=5 Tax=Rhodobacteraceae RepID=A9HQA6_9RHOB Length = 398 Score = 320 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 174/394 (44%), Gaps = 29/394 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILT--------VG 53 LT K +E R DGNGLYL V SG + W +R + G++ +G Sbjct: 7 LTKKLVENL----GAGRHGDGNGLYLVVDPSGARRWIVRVVVKGQKNKKGAPLRTDFGLG 62 Query: 54 KYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGY 112 ++T+ +AR++A R+ G++P A +F K+ + + W + Sbjct: 63 GADIVTINQARERALEYRRMAKTGLNPR--FNAKREIPTFEEFAKQVHIDRLPTWKNAKH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + D P IG + I + +++ + E A + +R V A Sbjct: 121 GQQWINTLRDYAFPKIGRMPIDSVNQPEVMMCLAPIWTA-KHETAKRLAQRIKTVLDVAR 179 Query: 173 VTGRAK-YNPAPDLADAMKGYRKK----NFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 G NP + +A + K + + +PAF L + +S A Sbjct: 180 SKGFRDGENPVTAIKEAHALPKVKGKVNHHKAMHWRDVPAFYSDLRGRNA--MSAKALMF 237 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 T RT E+ W +D + R+ T A MK + H VP++D+++ ++ L ++ Sbjct: 238 TCLTGSRTGEVLGTQWGEIDLDARVWTCPAIRMKTGEDHRVPLTDEMLSIIEPLRAM--- 294 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEV 346 S++VF G+ + +P+ ++L++++++ EG+ + HGFR F ++ P + E+ Sbjct: 295 QSDYVFEGQK-RHRPLSNMSMLMLLRRMQVEGV-TVHGFRSTFRDWASDVANAPREVSEM 352 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 L+H G V Y + LD+RR +M+ W++++ Sbjct: 353 SLSHLVGSDVERAYARSDLLDRRRALMERWSNYV 386 >UniRef50_Q4FSX1 Probable phage integrase n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FSX1_PSYA2 Length = 444 Score = 320 bits (821), Expect = 6e-86, Method: Composition-based stats. Identities = 102/401 (25%), Positives = 165/401 (41%), Gaps = 21/401 (5%) Query: 3 TVKQIEAAK----PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYP 56 T QI+ A ++ Y + GL LY+ + ++ R+ + GK K T+G YP Sbjct: 44 TDSQIKQAIKEHDSGDEVYTIQGYKGLNLYIRDNKTTTFRHRFTSPVTGKRKNFTLGAYP 103 Query: 57 LMTLQEARDKAWTARKDISVGIDP----VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 + TL++ARD ++ GIDP A +FS + EW + + + Sbjct: 104 VFTLEQARDMYRNNLSLLAGGIDPVFHHQDAHNKKRAMPTFSELADEWLQSQIASKQFEH 163 Query: 113 AT-ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA 171 T E + IG + I I+ +L I+ E + A + R C +F A Sbjct: 164 RTIEQKRTHIAYAAAYIGRMPIDHIKTPDVLRAIKDIEKKTIP-TAKRVRGVCQRIFALA 222 Query: 172 IVTGRAKYNPAPDLADAMKGYRKK--NFPFLPADQIPAFNKALATFSGSIV-SLIATKVL 228 I G NPA +AD M K + + + + + + K+ Sbjct: 223 IGQGYIDNNPAIAVADLMLPKPKTEHHHAIIEPIAFGKLLSDIDSVTDFYGHAQNILKLQ 282 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHV----VPMSDQVVELLTTLSSI 284 R ++ SM W +DF+ + T R V VP+ Q +E L L ++ Sbjct: 283 ALLFQRNGDMCSMRWDAIDFDAKTWTFSPQKTGNRGDMVASLVVPLPTQAIEHLRALHAL 342 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADA 343 T +VF K+K + + + ++GY+ + + HGFR T+M E Sbjct: 343 TSKT-PYVFYNSRRKEKFEHQQQLNKFLWRLGYKDVHTPHGFRASARTLMVEQLGISETL 401 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E+QL H + YN +DKRR+MMQ WAD+LD+ Sbjct: 402 AELQLGHNVRDANGRAYNRVTMIDKRRDMMQRWADYLDQLR 442 >UniRef50_A7ZG37 Symbiosis island integrase n=3 Tax=Campylobacter RepID=A7ZG37_CAMC1 Length = 406 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 107/404 (26%), Positives = 191/404 (47%), Gaps = 25/404 (6%) Query: 3 TVKQIEAAKPKEKPYRLLDGNG---LYLYVPVSG---KKVWQLRYKIDGKEKI---LTVG 53 ++ K K + +G LY+ + K + +Y+ +++ + +G Sbjct: 6 NDLALKKFTLKNKNREWVKDDGVKFLYVLAYKTQKETTKTFYFKYQESNQKRTTKQIKIG 65 Query: 54 KYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYA 113 KYP +TL EAR KA + G D ++ A +F + EW + K+Q + Sbjct: 66 KYPSITLAEARAKALELERLRDRGED-LQTATAKQKTITFKDVADEWID-KEQSKELIAF 123 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGA-----MERANKARRRCGEVF 168 + + +++P +G I +++ I + + R A E + + R ++ Sbjct: 124 NKQIGRIEKNLIPYLGDKAITELKRRDYAHAIEQIQAREAKRGITHETSLRTFRLLRKIL 183 Query: 169 RYAIVTGRAKYNPAPDLA--DAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIAT 225 A+ G ++NP D+ DA K +F + ++ A+ + GS + A Sbjct: 184 DLAVNKGYIEHNPTRDIIFNDAFKTSTNNHFKAITEPKKLKELLGAMQDYQGSFYTQQAL 243 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 +T LR+ +R + W+ VDFEN +IT A MK R++ +PMS QV +LL T+ + Sbjct: 244 IFGVHTFLRSANVRGLKWQYVDFENNLITFPAEAMKLREVFYMPMSKQVKKLLKTM--LE 301 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE----HEWPA 341 +FVF +P+ ++ + IK++G+ HG R ST++NE H + + Sbjct: 302 HKRGDFVFPSGISATRPLSDSTLNQAIKRLGFGDEMVFHGLRTTASTLLNENIKNHGFSS 361 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 D IE+ L H SV+ IY+ +Q LD+R ++MQWW+D+LD V+ Sbjct: 362 DVIELCLDHKERSSVKAIYDRSQRLDERAKLMQWWSDYLDSLVK 405 >UniRef50_B5J7B6 Site-specific recombinase, phage integrase family protein n=3 Tax=Proteobacteria RepID=B5J7B6_9RHOB Length = 446 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 167/414 (40%), Gaps = 38/414 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYL--YVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 L+ + + P + DG GL L V SG + W R I G+ + + +G P++T Sbjct: 28 LSAAFVRTVR---DPGKYHDGGGLGLMLRVEPSGSRRWVQRIVISGRRREIGLGTPPVVT 84 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQV-WSVGYATELAK 118 L AR+ A + + G DPV ++ + +F+ + K S + + Sbjct: 85 LAAAREAALDNMRTVQAGNDPVAIRRNARTFLTFATAAEHAIAAKSSEFRSDKHRKQWRS 144 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 D LPI+G L + + +L V+ E A++ R R + +A G + Sbjct: 145 TLDTYALPILGALPVGKVNTADVLRVLEPIWTE-KTETASRLRGRIEAILSWATAAGHRE 203 Query: 179 -YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRY 230 N A L + + + P L + + + AL G V+ A + L Sbjct: 204 GENAARWKGNLSEMLPKPQRVAKTVHHPALASSDVSVWYAALRGRDG--VAARALEFLAL 261 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTL----SSITK 286 TA R+ E+R M W VD + T+ A MK + H VP+S LL ++ + Sbjct: 262 TAARSGEVRGMTWAEVDLTTGVWTVPADRMKASREHRVPLSAPAFSLLESMAVAPDADPT 321 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQIGYEG---------------LESGHGFRHEFS 331 VF+ + + ++ V++++ HG R F Sbjct: 322 DCGRPVFSAPRGG--VLSDMSLSAVMRRMQQAEIDVGCAGWLDRASGRPAVPHGLRSTFR 379 Query: 332 TIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 E +P D E+ LAH G +V Y + L++RR MM W+D+LD +VE Sbjct: 380 DWTAECGYPRDMAEMALAHDVGSAVERAYRRSDMLERRRAMMAAWSDFLDGRVE 433 >UniRef50_B5QDA8 Phage integrase family protein n=1 Tax=Salmonella enterica subsp. enterica serovar Virchow str. SL491 RepID=B5QDA8_SALVI Length = 403 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 151/389 (38%), Gaps = 12/389 (3%) Query: 2 LTVKQIEAA--KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 L ++ KP + P + DG GL + + G +Q RY+ +GK L +G Y M+ Sbjct: 3 LNDTKLRRIDGKPYDGPVEIPDGGGLSVRISPKGLITFQYRYRFNGKPVRLKLGVYGSMS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNS----FSAIYKEWYEHKKQVWSVGYATE 115 ++EARD +K +S G +P +K + + + EW + V Y Sbjct: 63 IKEARDAVEVCKKWLSEGKNPAVYRKLDKKKKTESPDIATLVNEWLDTPSAKDLVKY-EY 121 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 +M + + G L + D++P ++ G+ +A + +V +YA+ Sbjct: 122 WKRMLKLHVTDLYGQLIVDDMDPTHWEKIFLAITKSGSPVQAGNVLVKMKQVIKYALRRK 181 Query: 176 RAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 R N L G + FL +I F A+ S + + ++L T R Sbjct: 182 RITSNSLMLLELTDVGKLPEDGERFLNDVEIGKFWLAIDKTRMSWQNKMVMRLLLLTGCR 241 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 ELR + D E R+ I K RK V +S+ VE L + + S Sbjct: 242 GVELRLARKVDFDLEGRVWVIPKENSKTRKRFVRGLSELSVECLKQVFEVYPGNSIVFPP 301 Query: 295 GRNDKKKPICENAVLLV---IKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 + +P+ ++ + ++ + S H R T M E E L H Sbjct: 302 ATLQEDRPMAAGTIISLAEQVETMMDCPHWSAHDLRRTCKTKMAELGVAPHVSEKILGHK 361 Query: 352 NGGSVRGIYNHAQYLDKRREMMQWWADWL 380 G + +Y+ Y+ +++E WA + Sbjct: 362 LTGML-AVYDQYDYIPEQQEAADKWAQKV 389 >UniRef50_C7I5J5 Integrase family protein n=2 Tax=Thiomonas intermedia K12 RepID=C7I5J5_THIIN Length = 401 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 111/393 (28%), Positives = 165/393 (41%), Gaps = 25/393 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ K + GLYL V G +W RY + GK ++G +TL Sbjct: 6 LTAQEVR--KWSKVDGLHRVATGLYLRVR-GGSALWTFRYMVAGKASEQSLGPISALTLA 62 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS---SNNNSFSAIYKEWYEHKKQVWS-VGYATELA 117 +A KA R I G D A+ + +++F + + +E K W +A + Sbjct: 63 DALAKAAEVRAKIRRGEDFALRPSATVVPTPSDTFEEVALQLWESMKPGWKNPKHADQWI 122 Query: 118 KMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR- 176 P G + +I ++L + E A + R+R V A G Sbjct: 123 NTLRMYAFPRFGRKAVSEIGTEEVLAALTPIWQ-TKHETATRLRQRIEAVLSAAKARGLR 181 Query: 177 AKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 A NPA L K R K+F + ++PAF L + +S A + Sbjct: 182 AGENPAAWRGHLNALLPTISKKRRVKHFEAMDWREVPAFMAQLRQRAN--MSAWALQFTI 239 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 TALRT + W +D E R+ I A MK + H VP+S Q VELL L S Sbjct: 240 LTALRTGTVIGTPWSEIDLERRLWVIPAERMKAQVEHRVPLSRQAVELLQALPRQEG--S 297 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHE-WPADAIEVQL 348 ++VF G I A+L +++ G + HGFR FS E +P+ +E+ L Sbjct: 298 DWVFWGARKPT--ISNMAMLELLR--GMRPGLTVHGFRSSFSDWAAESTHFPSQTVEMAL 353 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AH V Y ++KRRE+MQ W D+LD Sbjct: 354 AHMITNQVEAAYRRGDLIEKRRELMQAWGDYLD 386 >UniRef50_C6RKK3 Phage integrase n=3 Tax=Acinetobacter RepID=C6RKK3_ACIRA Length = 426 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 106/426 (24%), Positives = 176/426 (41%), Gaps = 55/426 (12%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGK----------EKI 49 L+V +I+ R G GL L V + +VW LR + + + Sbjct: 11 LSVAKIKN------TGRHSVGGVDGLCLNVEGN-SRVWILRAVVGKRLDKDGKLKPHRRD 63 Query: 50 LTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNN--------NSFSAIYKEWY 101 + +G YP ++L EAR KA R I GIDP+ K+ +F K Sbjct: 64 IGIGPYPEVSLAEARAKATELRLQIRSGIDPIAHKQEQLEKLYVQKLRDKTFMECAKVVI 123 Query: 102 EHKKQVWS-VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKA 160 +K + + + + I P +G + I I + + EV+R + E A + Sbjct: 124 ANKTRELKNEKHIGQWTSTLETYIYPTLGDISIGTITKVDIAEVLRPIWIK-KNETAKRI 182 Query: 161 RRRCGEVFRYAIVTGRAK-YNPAPDLADAMK-----GYRKKNFPFLPADQIPAFNKALAT 214 R R +F YA G + NPA + + P LP +Q+ F + L Sbjct: 183 RGRIETIFDYAKAMGYFEGDNPAEWKGNLEPIFGNIKQESRPHPSLPYEQVAGFIQHLRQ 242 Query: 215 FSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQV 274 G +S A + TA R+ E+ W+ +DF+N++ I MK K H VP+S + Sbjct: 243 KKG--ISPKALEFAILTACRSGEIFGAKWQEIDFKNKVWIIPKERMKANKEHRVPLSQEA 300 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQI----------GYEGL---- 320 V LL ++ T+P +F+F + + + ++ ++IK++ GY Sbjct: 301 VNLLKSIQEYTQPQ-DFIFPAPRN-GAMLSDMSLTILIKRMHEQKLKENGLGYIDPKQNR 358 Query: 321 -ESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD 378 + HGFR F + ++P + E LAH V Y YL+KR+ +M WA+ Sbjct: 359 VITTHGFRSTFRDWSADKTDYPREVCEHVLAHKLPDEVEAAYLRGAYLEKRKGLMADWAE 418 Query: 379 WLDEKV 384 + + Sbjct: 419 FCSANI 424 >UniRef50_Q1GUV7 Phage integrase n=1 Tax=Sphingopyxis alaskensis RepID=Q1GUV7_SPHAL Length = 403 Score = 317 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 96/395 (24%), Positives = 163/395 (41%), Gaps = 25/395 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++AA Y+ DG+GL+L V +G W LR + DGK + + +G L+TL Sbjct: 4 LTAVAVKAALANPGTYQ--DGDGLFLKVGKTGAASWLLRLQRDGKRQDIGLGSAKLVTLA 61 Query: 62 EARDKAWTARKDIS-VGIDPVKAKK-ASSNNNSFSAIYKEWYEHKKQVWSVG-YATELAK 118 EAR KA RK + D + +K + +F +++ + W Y + Sbjct: 62 EARAKAAELRKAVKVEKRDVLTERKDEEAAKVTFREAATQYHSENEAGWKSDVYGRQWLA 121 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 ++ P +G + I ++ V+ E A + R R V Y+ G Sbjct: 122 SLENYAFPKLGDMTTGGITAADIISVLTPIWQE-IPETARQVRNRICAVLDYSHAKGWRS 180 Query: 179 YNPAPDLADAMKG-------YRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 + G + N +P +P F AL S +A +L T Sbjct: 181 SEAPSGNSSLKAGRGLPRQIKKPANRKAMPYVAVPPFLTALRR--KPSYSRLALDLLILT 238 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEF 291 +R++E+R W D + R+ TI A MK + H+VP+S+ + +L ++ +E Sbjct: 239 GVRSQEVRLAKWDEFDLDQRLWTIPAEHMKRSRAHIVPLSEAALAVLVKADAMRLEGAEV 298 Query: 292 VFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHA 351 VF G K + +L V++ + + HGFR F+ +P +E LAH Sbjct: 299 VFPGMTGK--AMSNMTLLKVMRDM--QEPFHVHGFRSSFTDWAANEGFPNAVVEAALAHK 354 Query: 352 NGGSVRGIYNHAQYL------DKRREMMQWWADWL 380 +V+ Y YL R ++M+ W ++ Sbjct: 355 TPDAVQAAYRRTTYLGTPDNPGARVKLMEAWGNYC 389 >UniRef50_B0U0U5 Phage integrase n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25017 RepID=B0U0U5_FRAP2 Length = 398 Score = 316 bits (812), Expect = 6e-85, Method: Composition-based stats. Identities = 120/398 (30%), Positives = 187/398 (46%), Gaps = 19/398 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT +I+ K K R++D GLYL V +G K WQLR+ I+ K K +G YP L Sbjct: 1 MLTETKIKKIKATGKEQRVIDTLGLYLRVDKNGNKTWQLRHTINEKRKWFGLGSYPSTNL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQ-VWSVGYATELAKM 119 EAR + R+ I G D + AK + + ++ E +K+ S + +L + Sbjct: 61 NEARKLSAELRERIDNGED-ILAKPDAKKVIYVKDLVAQYIEFQKKNSSSEDFIKKLTNI 119 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 + I+P IG +IQ I+ ++V+ D+GA NK + R A + Sbjct: 120 SKNHIIPKIGNRDIQTIKRKDCIDVLEPLIDKGA--TRNKVLSALKGISRLARHNELIEN 177 Query: 180 NPAPDLADAMKGYRKKNFPFLPA-----DQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 +P D+A A+ Y+ + P + G+ +S A K+L Y LR Sbjct: 178 DPTHDIARALPQYKAQPMPHISPLHNKSLLKELLLDLDNYTKGNYISRYALKLLPYIVLR 237 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFA 294 EL S+ W D EN I I A +MK RK H+V +S Q +++ L + ++ F Sbjct: 238 PIELVSLQWDFYDAENSRIIIPAEIMKMRKDHIVCLSRQAKQIIEELKDLQGGF-KYFFP 296 Query: 295 G-RNDKKKPICENAVLLVIKQIGYEG----LESGHGFRHEFSTIMNEHE----WPADAIE 345 D I ++ I+ +GY G ++ HGFRH +ST ++E + + AIE Sbjct: 297 SYYKDNHDHINYESLAKAIRSMGYNGIDKPKQTLHGFRHIYSTAIHELQEQYHFSELAIE 356 Query: 346 VQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 + LAH + R YN A L +R ++MQ +ADW+D Sbjct: 357 LVLAHTDKNKSRASYNFADKLSERAKIMQVYADWIDNL 394 >UniRef50_A5G635 Phage integrase family protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G635_GEOUR Length = 437 Score = 316 bits (812), Expect = 6e-85, Method: Composition-based stats. Identities = 84/406 (20%), Positives = 166/406 (40%), Gaps = 35/406 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 T + I++ KP+ + Y++ +G G + V +G K W Y +GK + L +G YP +L+ Sbjct: 18 FTDRFIKSLKPESEMYQVREGRGFAIRVLPTGVKTWYYIYTFNGKRRQLNLGNYPDKSLE 77 Query: 62 EARDKAWTARKDISVGIDPVKAKKAS-----SNNNSFSAIY-KEWYEHKKQ-VWSVGYAT 114 +A + + G+DP+ A+ + + + + + S + Sbjct: 78 DAHKVYLESAALVKNGVDPMDKPVAADPPPPQVELTVRRLAVDLYLDEWSKIHHSERWHY 137 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 K + D+LP G DI +E++ R A +A + ++ YA+ Sbjct: 138 NNKKALEADVLPAWGDRLAADIRRKDAVEILELVAKR-APGQARNVLKAARGMYTYAVDR 196 Query: 175 GRAKYNPAPDLADAMKGYRKK---NFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYT 231 +YNP D+ + + + L +I A+ GS + A K++ T Sbjct: 197 ELLEYNPFTDIKISRTIPKMQPMSRDRELSEKEIKHLWNAIDEGGGSDGTKRALKLILIT 256 Query: 232 ALRTKELRSMLWKNVDFENRIITIDASVMKGRK----IHVVPMSDQVVELLTTLSSITKP 287 R E+ M + + E + TI +K RK H + +S + L+ Sbjct: 257 GQRPGEVVGMHRQEI--EGKWWTIPWQRIKTRKRRQEDHRIYLSPLAMSLI-------GD 307 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYE---------GLESGHGFRHEFSTIMNEHE 338 F+F+ + + + ENA+ +++ + + H R +T ++ Sbjct: 308 GKGFIFSDPSGENS-MTENALSHHVRKDIPDTVKKPYYGLPRWTPHDLRRTAATRLSRIG 366 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 + I+V L HA G V GIYN +Y ++++ + W+ L++ + Sbjct: 367 ASDEIIDVILNHAKKG-VSGIYNRNKYDKEKQQWLTKWSQHLEKLI 411 >UniRef50_UPI00003841F3 COG0582: Integrase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003841F3 Length = 394 Score = 316 bits (811), Expect = 9e-85, Method: Composition-based stats. Identities = 84/390 (21%), Positives = 158/390 (40%), Gaps = 20/390 (5%) Query: 2 LTVKQIEAAKPKEKP---YRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 +T + ++P + D G L V G K + L Y+I G+++ +T+G YP Sbjct: 5 ITDAIAKRVSAGDRPQVFFWDADVKGFGLRVTNRGAKSFILDYRIGGRQRRITIGSYPDW 64 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 ++ AR +A ++++ +G DP+ + A + ++ + + + Sbjct: 65 SVAAARTEAGNLKREVDLGNDPMGERHADRAAPTMRDLWDRYKRDHLPRKAARSQADETM 124 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRF-EDRGAMERANKARRRCGEVFRYAIVTGRA 177 M++ +LP +G ++ D+ + + R RG RAN+ F AI Sbjct: 125 MWEKLVLPTLGKHKVGDVTHTDIEALHRDITVSRGTPVRANRVIEVVRRAFNLAIRWEWI 184 Query: 178 KYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKE 237 + NPA ++ +K +L +++ + AL T VS A ++L T R E Sbjct: 185 EKNPASG---QLRNPEEKRQRYLSPEELSRLSAAL-TAHHEPVSADAIRMLMLTGARKSE 240 Query: 238 LRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRN 297 + W+ D + + T ++ K RK H VP+S + LL + +VF G Sbjct: 241 VLGATWEMFDLDAGVWTKPSAHTKQRKEHRVPVSANALTLLKRIRE--TAEGPYVFPG-K 297 Query: 298 DKKKPICE--NAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 +P+ + + V K G H RH F++++ I L H + Sbjct: 298 GGDQPLTDVKRSWAAVCKAADITG-ARIHDLRHSFASLLVSGGASLPIIGAMLGHTQVQT 356 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + Y H Y + R AD + + ++ Sbjct: 357 TQR-YAHL-YDEPLRAA----ADHVGKTID 380 >UniRef50_C1D7T3 Integrase n=2 Tax=Laribacter hongkongensis HLHK9 RepID=C1D7T3_LARHH Length = 416 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 98/405 (24%), Positives = 163/405 (40%), Gaps = 27/405 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLY-VPVSGKKVWQLRYKID--GKEKILTVGKYPL 57 +LT +Q +P +K GL+L + G W R+ K + L +GKYP Sbjct: 3 VLTDRQAANIRPTDKAKAHGGVVGLWLIPLKEKGTGRWIFRFTSPTSKKRRDLGLGKYPA 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSN-------NNSFSAIYKEWYEHKKQVWSV 110 +T+++A + AR + GIDP+ K+ +F +E WS Sbjct: 63 ITIKQAGELGEAARLLVLQGIDPIDHKREQEAAAEAANERITFEQAAIHTHETLSPGWSN 122 Query: 111 GYA-TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 +A + + P IG + D+ V+ E A + R+R V Sbjct: 123 RHASADWINSLRRHVFPKIGDKPVADLVRRDFAAVLLPIW-LVLPETAARVRQRMQTVME 181 Query: 170 YAIVTGRAKYNPAPDL------ADAMKGYRKKNFPFLPADQIPAFNKA-LATFSGSIVSL 222 + + N K R+++ P +P +PAF A L V+ Sbjct: 182 WCLARDLIAANQCDSALSRLLPKQPSKAEREEHHPAMPWRLLPAFVAAHLGEGRPVSVAR 241 Query: 223 IATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLS 282 + L TA R+ E+R M+W VD ++ TI MK H VP+SD+ + +L Sbjct: 242 PMLEFLILTAARSGEVRGMVWDEVDLSAKVWTIPGERMKAGATHQVPLSDRAMAILRQQR 301 Query: 283 SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYE-----GLESGHGFRHEFSTIMNEH 337 P S VF ++ + + + + + ++ + HGFR F EH Sbjct: 302 E-RHPFSAMVFPP--NRGRVVSDMTLTRYLHEVDAPSDTEGRHATVHGFRSTFKDWAIEH 358 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 +P + E LAH V Y+ + L++RR +MQ WAD+++ Sbjct: 359 GYPGELSEKALAHMIKNKVEAAYHRSSQLEQRRALMQAWADYVES 403 >UniRef50_Q1QAC1 Phage integrase n=2 Tax=Psychrobacter RepID=Q1QAC1_PSYCK Length = 448 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 168/405 (41%), Gaps = 23/405 (5%) Query: 3 TVKQIEAAKPKEKPYRLLDGNG--LYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLM 58 + + I + KP++K Y + N L+L V + K W RY K+ I+++G YP + Sbjct: 8 SDRSISSHKPEDKKYFVAVKNHPKLFLMVRPTETKSWMYRYYPPSNPKQSIISIGIYPSI 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSN------NNSFSAIYKEWYEHKKQVWSVGY 112 + A + +S GIDP ++ NSF+ E+++ +Q Sbjct: 68 SYARACEVWREYEDLLSKGIDPKIHREDIKKSFISKTKNSFNHFAWEYFDTLEQSQKGNT 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRG------AMERANKARRRCGE 166 + I IG I +I ++LEV+ + + ++A + + Sbjct: 128 LIRKKGRLEL-ICSYIGNEPISEIGSPRMLEVLLDIQAKSLNKDDKPTDKAERCAGIASD 186 Query: 167 VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIAT 225 VF YA G NPA + + + P + + +A+ T G ++ + Sbjct: 187 VFVYANARGFCSSNPAALIKSQLAKSSYGHRPAVTKPKDLAKLLRAIETIEGDPNTINSL 246 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVELLTTL 281 ++L +R +LR M W ++D E + +G+ K VVP+ Q V +L Sbjct: 247 RLLALLFVRNGDLRRMCWIDLDLEAGRWRLKPLKGQGKVNMVKDMVVPLPRQAVAILREQ 306 Query: 282 SSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWP 340 I F+ K + I + +K +GY+ + HGFR TI+ E ++P Sbjct: 307 QKINGHTKYVFFSQTAKKHQIISDATANKRLKDLGYKDIHCAHGFRATAKTILQEQLKYP 366 Query: 341 ADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 +E+ L H Y +Y+D R +MMQ WAD+LD E Sbjct: 367 LVLVEMALGHTTKDPNGTAYGRFEYIDDRSDMMQKWADYLDALRE 411 >UniRef50_Q3J1E6 Possible phage-related integrase n=2 Tax=Rhodobacter sphaeroides RepID=Q3J1E6_RHOS4 Length = 413 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 155/407 (38%), Gaps = 31/407 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 L+ +E KP +K + D GLYL V +GKK WQ+RY+ G + +++G +P+++ Sbjct: 3 LSAAGVEKIKPTDKRQEIPDSLCVGLYLIVQPTGKKGWQVRYRHGGVHRRMSLGAFPVLS 62 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSVGYA 113 L AR++A S G DP KA+ + ++ + G Sbjct: 63 LAGARERARQTLAAASAGTDPAAEVKAAKAPKLDGDRDKIKTLIGQFDKRHLSKLKSG-- 120 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 + + + ++ G ++ I +++++ D G + AN+ R + F + + Sbjct: 121 AVVRRELERHVVSAWGERDVHQIGKRDVIDLLDGIADSGRVVTANRVRAYLAKFFGWCVE 180 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 +PA + A G L D+I F A KVL T Sbjct: 181 RDILATSPAAGVKPA--GKETSRARVLTDDEIRWFWTACEAEGFPWGP--FGKVLLLTGQ 236 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R E+ M + + + A K + H VP++ V L + +T F Sbjct: 237 RLNEVAQMTDSEI--RGDLWHLTADRTKNGRAHDVPLTGAVRAALDEVERVTDEEGRVRF 294 Query: 294 AGRNDKKKPIC----------ENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNEHEWP 340 + P+ E V + K+ G + H R +T M P Sbjct: 295 IFTTTGRTPVSGFFKARAVLAEAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMARLGIP 354 Query: 341 ADAIEVQLAHAN--GGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 E L H + GG + +Y Y D++R+ ++ WA ++ VE Sbjct: 355 VRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRQALEAWARFVLSLVE 401 >UniRef50_B0KFC6 Integrase family protein n=5 Tax=Pseudomonas putida RepID=B0KFC6_PSEPG Length = 436 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 104/403 (25%), Positives = 178/403 (44%), Gaps = 22/403 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVP------VSGKKVWQLRYKIDGKEKILTVGKY 55 L+ I + K Y D GLYL V S + W+L+Y++ GKE + +G+Y Sbjct: 27 LSDAFIRSLTTSGK-YADGDVPGLYLQVRASLKPGKSPSRHWRLKYRLRGKENVYVIGRY 85 Query: 56 PLMTLQEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWS 109 P + L+EAR+ A AR ++ IDP+KAKKA + +F+ + +EW + K Sbjct: 86 PDVGLKEARELARAARNSVANHIDPLKAKKAKIEAQWLNEARTFAYVAEEWMKFKSADLV 145 Query: 110 VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFR 169 + ILP IG + +I+ + +I + M A + R + Sbjct: 146 SKSVAGFRGALQNHILPAIGERPVSEIKLEHITAIITELRYKRIMAMARRVRTIIRSILG 205 Query: 170 YAIVTGRAKYNPA-PDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKV 227 +A G + N A + + + + P + + F L + V+ A ++ Sbjct: 206 FAEGRGWVERNVALSNTEELKIRHVVTSNPAIERPADLGKFLLRLDDLNLGSVAY-AMRL 264 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMK--GRKIHVVPMSDQVVELLTTLSS-- 283 L +R EL M W++VD S K + H+VP+ +Q + LL L Sbjct: 265 LVLLPVRPGELVKMRWEDVDLIGADWRYVVSKTKHLDKSKHIVPLPEQALVLLRELHKDR 324 Query: 284 -ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPA 341 + + +VF + I ++L ++++ E + HGFR + TI +EH Sbjct: 325 VVDDAGNGWVFGSPVYPGRSIDATSILKSLQKVWPEYAITAHGFRATYRTIAHEHLGIDP 384 Query: 342 DAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 +E+ L+H G++ +Y AQ L +RRE Q WA++LD+ Sbjct: 385 IVLELSLSHRMPGALGAVYARAQLLSQRREAAQLWANYLDQLR 427 >UniRef50_C7JFF4 Phage integrase n=8 Tax=Acetobacter pasteurianus RepID=C7JFF4_ACEP3 Length = 434 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 91/400 (22%), Positives = 163/400 (40%), Gaps = 28/400 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLMT 59 L+ ++ K + L DG GL+L V G ++W+ R+K + GK + +++G ++ Sbjct: 44 LSALKVSRHKSGD----LCDGGGLWLVVT-GGSRLWEFRFKSPVTGKRRQMSLGSAYSLS 98 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNN------SFSAIYKEWYEHKKQVWSV-GY 112 L +AR+KA R +DP+ ++ +F+ + ++ + + W Sbjct: 99 LADAREKAAKCRGMTENRLDPIIEREKEKAARELEKGLTFAEVAAQYIKAQTPAWKDHRS 158 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + PI G ++D++ +L +R E + + R R + YA Sbjct: 159 PAVWTSSLTQHVFPIFGEKSVRDVDTQDVLTALRPIWTE-KTETSGRIRGRIERILDYAR 217 Query: 173 VTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 V + NPA L K + ++ I KAL + +G ++ A Sbjct: 218 VQQWREGENPARWRGHLSVMLPAPSKITKVQHHKAAEWKDISEIMKALQSING--MAAKA 275 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTT-LSS 283 + TA R+ E+R+ +W +D + + A MK + H VP+S V++L L Sbjct: 276 VRFCCLTAARSGEVRNAVWSEIDLSEALWVVPAEKMKAGREHRVPLSGDAVKVLQEVLPH 335 Query: 284 ITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEW-PAD 342 + +F G + +P+ + AV + + HG R F E + + Sbjct: 336 RDAVSGDLLFPGAK-RGRPLSDVAVSKALHHAAGTKEVTVHGLRSTFRDWAGETKVCSRE 394 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 E LAHA V Y + LD RR +M+ WA E Sbjct: 395 VAEAALAHAGKSKVEAAYFRSDLLDLRRPLMEEWAAQCRE 434 >UniRef50_C6XJP3 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJP3_HIRBI Length = 395 Score = 313 bits (804), Expect = 6e-84, Method: Composition-based stats. Identities = 105/397 (26%), Positives = 168/397 (42%), Gaps = 30/397 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 L+ + + A K R DG GLYL V +G + W Y+ K + +G YP ++L Sbjct: 9 LSDLKCKRA----KTGRHSDGGGLYLNVKQTGARNWLFIYRWGDKRPSIGLGGYPSVSLS 64 Query: 62 EARDKAWTARKDISVG--IDPVKAK----KASSNNNSFSAIYKEWYEHKKQV-WSVGYAT 114 EAR +A R ++ DP K F + K + + Sbjct: 65 EARKQAAMCRDWLNQTPRKDPKKEWMVLNAPEVRIEPFGPFALRHIDAIKGDFRNAKHIA 124 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + + PI + +IE +L+ + E A + R R V A V Sbjct: 125 QWRSTLERYAEPIW-AKPLNEIEVDHVLKCLEPIWA-TKNETARRVRGRIEAVLESARVR 182 Query: 175 GRAKY-NPAPD---LADAM--KGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 G + NPA L + K ++K+ L DQ+ AF + L SG + +A + Sbjct: 183 GMREDPNPASWNGQLKHVLGRKRPKQKHLAALEYDQMHAFWQTLRQKSG--IGALALQFT 240 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 TA R+ E+R W +D E I +I A MK K H+VP+S + ++ +S Sbjct: 241 ILTAARSGEVRGATWNEIDIEAGIWSIPAERMKAEKPHMVPLSQAALAIIDHISKAR--Q 298 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLE----SGHGFRHEFSTIM-NEHEWPADA 343 E +F G KPI + + ++ + + + HGFR FS NE ++P + Sbjct: 299 GELIFMGMR-AGKPISDMTMTKALRDMKLTNSQGEAVTAHGFRSTFSDWARNETDFPREL 357 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 IE LAH+ G V Y Q +++RR +M+ WA ++ Sbjct: 358 IEESLAHSL-GKVEAAYRRGQAIERRRALMEAWALYV 393 >UniRef50_Q92LG2 Phage-related integrase n=1 Tax=Sinorhizobium meliloti RepID=Q92LG2_RHIME Length = 409 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 106/402 (26%), Positives = 162/402 (40%), Gaps = 35/402 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 LT KQ+ K KP DG LYL V +G K + ++ ID K++ T+G Y Sbjct: 6 LTDKQVRGIK---KPGNHPDGGNLYLRVRENGSKSFIVKATIDKKQREWTIGSYGSEEHH 62 Query: 58 MTLQEARDKAWTARKDISVGI--DPVKAKKASSNNN--------SFSAIYKEWYEHKKQV 107 +L EAR + I G +P S F E + + Sbjct: 63 FSLAEARKRRDEIMAVIRAGGISEPTGKSVTQSVEPESTTFPAPLFGPFSIELIQQIEGG 122 Query: 108 -WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGE 166 + + + + I + I +L ++R A E A++ R R Sbjct: 123 FRNAKHRAQWRSTLETYCKSIW-EKRVDRITTDDVLAILRPIWSTKA-ETASRVRGRIER 180 Query: 167 VFRYAIVTGRA-KYNPAPD------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 V A V G NPA L + ++ + P LP +P + L S Sbjct: 181 VLNAAKVRGFRSGENPAAWQGHLQLLLPKRQKLQRGHHPALPFQDLPTLWQKL--TSIDT 238 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 ++ A + L TA R+ ELR W+ D E R+ TI AS MK + H+VP+SD +E+L Sbjct: 239 IASAALQFLILTAARSGELRGAKWEEFDLEKRLWTIPASRMKAAREHLVPLSDSCIEILK 298 Query: 280 TLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HE 338 + I S+FVF G + P+ + + V+ G + HGFR F E + Sbjct: 299 RMQKIRH--SDFVFPGTR-EHAPLSDMTLSKVLH--GLCKGYTVHGFRSTFRDWCGEKTD 353 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 + + E LAH G +V Y L+ RR +M W ++ Sbjct: 354 FSREHAEACLAHTIGSAVERAYRRGNSLEPRRRIMTAWEAFI 395 >UniRef50_Q21D10 Phage integrase n=3 Tax=Alphaproteobacteria RepID=Q21D10_RHOPB Length = 429 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 112/418 (26%), Positives = 169/418 (40%), Gaps = 46/418 (11%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LTVK +E + DG GLYL + G K W RYK+ G+ +G + L+ Sbjct: 8 LTVKTVEHL---SRRGMHADGGGLYLQIAEGGSKSWLFRYKLHGRTHWHGLGSLRDVGLE 64 Query: 62 EARDKAWTARKDISVGIDPVKAKKA--------SSNNNSFSAIYKEWYEHKKQVWS-VGY 112 EAR+KA ARK G DP++AK+ ++ +F K + + + W + Sbjct: 65 EAREKATGARKVRRNGGDPIQAKRQAEAAARIEAAKAITFGEAAKRFIKANRAGWKNAKH 124 Query: 113 ATELAKMF----------DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR 162 A + +D I L I I+ +L +I E A + R Sbjct: 125 ADQWVMTLLGVDQKGKPSKNDYCKTIRDLPIGAIDTTLVLRIIEPIWA-SKTETATRIRS 183 Query: 163 RCGEVFRYAIVTG-RAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALAT 214 R +V A G NPA L K + +N P LP Q+P F + L Sbjct: 184 RIEQVIDAAKAKGEFNGENPARWKGHLDNLLPATSKVRKVRNHPALPYRQLPDFMRKLRE 243 Query: 215 FSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQV 274 G + A + TA+R + W +D + + TI A++MK H VP+S Sbjct: 244 RDG--AAAAALEFQILTAVRPGNAVAAKWDQIDRQTSVWTIPAALMKSDAEHRVPLSKAA 301 Query: 275 VELLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIG----------YEGLESGH 324 + +L + + TK SE++F K KP+ + ++ VI ++ + H Sbjct: 302 LAVLDRMEA-TKDDSEYIFPNT--KGKPLSDASMAAVIDRMNELERRWIDPKLDREIVPH 358 Query: 325 GFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 GFR F EH + E LAH V Y +LD R MM+ WAD+ Sbjct: 359 GFRSSFRDWAAEHGYDDPVAEAALAHKVSDEVVAAYRRTTFLDLRNRMMEDWADYCAR 416 >UniRef50_A3V8A4 Possible phage-related integrase n=2 Tax=Rhodobacteraceae RepID=A3V8A4_9RHOB Length = 386 Score = 313 bits (802), Expect = 8e-84, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 152/388 (39%), Gaps = 19/388 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT I + +PK++ Y + D + G + V SG W L + +G+ K +T+G YP ++ Sbjct: 9 LTDTFIRSLRPKDQRYDVFDASQPGFGVRVATSGALSWVLLTRENGRRKRITLGGYPAIS 68 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKM 119 L +AR+ A A +I G + +F +EWY ++ + ++ + Sbjct: 69 LSKAREAARLALSEIQEGT-----FGRKNAPATFETAVEEWYA--REQRAKKSFRQVEQA 121 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 +LP +G ++ I+ L+ VI R +RG + +AN+ R F +AI Sbjct: 122 MRLHVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAFITRFFNFAIERDLLMS 181 Query: 180 NPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 +PA L L D++ A + + ++L TA R E+ Sbjct: 182 SPAAALPRP--AVEISRDRVLSRDELCAVWETAEQMGFPFGRIT--QLLILTAQRRDEVA 237 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDK 299 M W +D + I K K H+V +S Q + LL+T+ + +F Sbjct: 238 GMRWSELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTIPRQNGV--DLIFTTTGRS 295 Query: 300 KKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPADAIEVQLAHANGGS--V 356 A + + H R +T M E ++ L H +G V Sbjct: 296 AVSGFSKA-KAALDARSHVSDWRFHDLRRSAATFMAEELRITPVVVDRILNHVSGTVRGV 354 Query: 357 RGIYNHAQYLDKRREMMQWWADWLDEKV 384 +Y ++L R + W ++ V Sbjct: 355 TAVYLRGEHLADREAALAAWGQLVENLV 382 >UniRef50_D1Y2Y2 DNA integration/recombination/inversion protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y2Y2_9BACT Length = 406 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 109/403 (27%), Positives = 187/403 (46%), Gaps = 27/403 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 MLT I A KEK Y L DG+GLYL + GKK W +R + G+E+ + +G+YP+M+L Sbjct: 1 MLTNTAIAKAAAKEKDYMLFDGDGLYLRISTKGKKKWLIRSFVGGRERKVVIGEYPVMSL 60 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAKMF 120 QEAR + + G+ + +F ++ W + K++ S + + + Sbjct: 61 QEARRERDDRKMKARTGVS------IRNKTVTFGDVFARWLKKKEKAVSPDHYKIIKRRI 114 Query: 121 DDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYN 180 + +LP + + DI +LLEV++ +RG ++ A + + A G N Sbjct: 115 EMYLLPYLANRPVADISRPELLEVLQHPIERGLIDTARRTGALARSILDAAADKGEVALN 174 Query: 181 PAPDLADAMKGYRKKNFP-FLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELR 239 A DL+ ++ + +NF ++ A+ + + A +++ YT +R ELR Sbjct: 175 IAADLSRSLPEWEVRNFKSAFDPREVRRLLLAIDCYP-RQIVRYALRMVSYTFVRRSELR 233 Query: 240 SMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK---PVSEF----V 292 W + + I K ++I +VP+S Q +E+L + I + F + Sbjct: 234 RATWAEIHEDE--WHIPVVHAKKKRIQIVPLSRQALEILDAMRRIAQIRWKGQPFEDKPI 291 Query: 293 FAGRND---KKKPICENAVLLVIK--QIGYEGLESG-----HGFRHEFSTIMNEHEWPAD 342 F + + +A+ + +K ++ HGFRH ST+++EH W + Sbjct: 292 FPSTRNTPSGSPYMGISAMEVALKWLVAHVPAPDTPPLIDLHGFRHMASTLLHEHHWDHE 351 Query: 343 AIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 AIE QL+H Y+ ++ L RR MMQWWAD+LD E Sbjct: 352 AIERQLSHLKRDKTEATYDKSKLLPLRRRMMQWWADYLDAVKE 394 >UniRef50_B5J8B6 Site-specific recombinase, phage integrase family protein n=2 Tax=Rhodobacteraceae RepID=B5J8B6_9RHOB Length = 436 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 174/394 (44%), Gaps = 29/394 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILT--------VG 53 LT K +E LYL V SG + W +R + G++ +G Sbjct: 46 LTKKLVENLGAGRHGDGGG----LYLVVDPSGARRWIVRVVVKGQKNKKGAPLRTDFGLG 101 Query: 54 KYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGY 112 ++T+ +ARD+A R+ G++P A + +F ++ + + W + Sbjct: 102 GADIVTINQARDRALEYRRMAKQGLNPR--FNAQRDIPTFEEFAQQVHIERMPTWKNAKH 159 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + D P IG + + I+ +++ + E A + +R V A Sbjct: 160 GQQWINTLRDYAFPKIGRMPVDSIDQPEVMMCLSPIWTE-KHETARRLAQRIKTVLDVAR 218 Query: 173 VTGRA-KYNPAPDLAD----AMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKV 227 G NP + D + K+ + +PAF L T + +S A + Sbjct: 219 SKGFRSGENPVTAIKDAQALPKVKTKPKHHKAMHWRDVPAFYTDLKTRNA--MSANALRF 276 Query: 228 LRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKP 287 T RT E+ M W+ +DF+ R+ T MK ++H VP++D+++ ++ L ++ Sbjct: 277 TCLTGSRTSEVLGMRWEEIDFDARLWTCPIERMKTGEVHRVPLTDEMLSIIEPLKAL--- 333 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEV 346 S++VF G+ + KP+ ++L++++++ EG+ + HGFR F +E P + E+ Sbjct: 334 KSDYVFEGQK-RHKPLSNMSMLMLLRRMDVEGV-TVHGFRSTFRDWASEVASAPREIAEM 391 Query: 347 QLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 L+H G V Y + ++KRR +M+ W+ ++ Sbjct: 392 SLSHRVGSDVERAYARSDLIEKRRALMKRWSMYV 425 >UniRef50_A1TXN0 Phage integrase family protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TXN0_MARAV Length = 396 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 155/393 (39%), Gaps = 33/393 (8%) Query: 22 GNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPV 81 G GL + + + G K W R++ GK+ +++G+YP +L EARD A ++ GI+P Sbjct: 6 GGGLAIRISIRGTKTWFYRFRFRGKQDAVSLGRYPTTSLLEARDVHGDACALLAKGINPK 65 Query: 82 KA----KKASSNNNSFSAIYKEWYEHKKQVWSVGYAT--------ELAKMFDDDILPIIG 129 KA KK + + ++ +W S + ++ + +G Sbjct: 66 KAFKESKKVAEQTWTGQELFDDWIRVYSSTPSTRTKRTPSEQVVRQTTWRWNKYLRRTLG 125 Query: 130 GLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAM 189 + I I +I + + E+A K +F A+ G NP L + Sbjct: 126 QILIPTITKQVAASLISAVSELNSREQARKCLTILNGMFGLAVAKGLIDENPCYGLQPSK 185 Query: 190 KGYRK--KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVD 247 G K L ++ F +AL S A K + T LR E+ W ++D Sbjct: 186 LGASKGSPRSRVLTPSEMKRFWEALEDSSLDTSVRAALKAILLTGLRRGEICQAKWSDID 245 Query: 248 FENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKKKPICENA 307 F + + + K R+ H VP+S + LL +L +VF +PI N+ Sbjct: 246 FNTNVWNLPPEITKSRRKHTVPISTALKNLLQSL----DMDGTYVFRSTRAPWQPIGSNS 301 Query: 308 VLLVIKQI-GYE-------------GLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHAN 352 + I ++ G + S H R +T + E E P I L H + Sbjct: 302 LTTAIARLQGIKTQQVNEKAPLFGLERFSVHDLRRTVATGLGEYCETPPHVIRRILNHLS 361 Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + IY A D++ + ++ W+ W+ E +E Sbjct: 362 DDRLEDIYQRATLFDEQAKALERWSTWVMETIE 394 >UniRef50_B0T5C0 Integrase family protein n=31 Tax=Proteobacteria RepID=B0T5C0_CAUSK Length = 436 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 104/411 (25%), Positives = 166/411 (40%), Gaps = 42/411 (10%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT Q++ +P DG GLYL V G K W RY + G+ + + +G ++L Sbjct: 8 LTALQVKR---TTRPGMHPDGGGLYLMVQKGGGKSWVYRYMLQGRAREMGLGPAHTISLS 64 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNNN--------SFSAIYKEWYEHKKQVWS-VGY 112 EAR A AR+ GIDP++ ++ + +F + K W + Sbjct: 65 EARAMARDARRLKFDGIDPIEQRQLARTRTTLEAAKGFTFKQASSAYIRANKAGWRNEKH 124 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 A + PI G + DI+ +L V+ E A++ R R V +A Sbjct: 125 AQQWESTLTTYADPIFGSRGVSDIDTGMILAVLEPIWS-TKPETASRVRGRVEAVLDWAT 183 Query: 173 VTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIA 224 G + NPA L + ++ ++ LP ++ AF AL G A Sbjct: 184 ARGLREGENPARWKGHLEKLLPAKSRVHKVEHHAALPYAELSAFMAALKDQPG--AGARA 241 Query: 225 TKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 + TA RT E+ W +D ++ I A MKGRK H VP++ ++E+L + Sbjct: 242 LEFTILTAARTGEVIGAEWSEIDLAGQVWIIPADRMKGRKEHRVPLTAPLIEILEGRKAD 301 Query: 285 TKPVSEFVFAGRNDK-----------------KKPICENAVLLVIKQIGYEGLESGHGFR 327 V V + K + A+L V+K++ + HGFR Sbjct: 302 YAAVIRRVLESKRQPIPDDIPPVGPLFWGTLFGKKLSNMAMLAVLKRMK-REDLTAHGFR 360 Query: 328 HEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWA 377 F E E+ ++ +E+ LAH G V Y +KR+ +M+ WA Sbjct: 361 STFRDWAAETTEYRSEIVEMALAHTIGNKVEAAYRRGDLFEKRKLLMEDWA 411 >UniRef50_D1AZM1 Integrase family protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1AZM1_SULD5 Length = 416 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 105/408 (25%), Positives = 184/408 (45%), Gaps = 27/408 (6%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDG--KEKILTVGKYPLM 58 +LT K+I+ KP++KPY D NGL + + G+K+W+ Y K++ T G YP Sbjct: 8 LLTDKEIKNFKPEDKPYIKSDINGLRILIHPDGRKIWEFVYTSPTLYKKRKSTFGTYPKT 67 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNS------FSAIYKEWYEHKKQVWSVGY 112 TL+EARDK T I GIDP+ A++ FS + W++ ++ Sbjct: 68 TLKEARDKRETYLNLIKQGIDPIDAQREEKAEVKLQKESDFSNVVNLWFQSQESHIVHST 127 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + +FD ++P++ I +I+ +L+++I + + E A + +++++A Sbjct: 128 YKKKRALFDTTVIPVLKHKSIAEIKHDELVQII-KIKAIQTPETAKRLLGYFHDLWQFAC 186 Query: 173 VTGRAKYNPAPDL--ADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLR 229 G +N P++ + KK++ + + ++ T+ G I + A K + Sbjct: 187 THGYCDFNIVPNIHAKSVLPKIVKKHYACITDPSILKQLVNSIYTYGGHISTKNALKFVL 246 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVM--KGRKIHVVPMSDQVVELLTTLSSITKP 287 + LR L S+ W VDFE +ITI M K ++P+SD+ + +L T Sbjct: 247 HVPLRAGNLVSLKWAYVDFEKHLITIPRKEMKAKSGDDFILPLSDEAIAILQEQYLYTSH 306 Query: 288 VSEFVFAGRNDKKKPICENAVLLVIKQIGYE-----GLESGHGFRHEFS----TIMNEHE 338 EFVF D I E ++++G+ + H FR F T EH Sbjct: 307 K-EFVF--VADNGLHIDEVTPSRALQRMGFNNETLGNKQRLHSFRATFRSLVDTHQMEHR 363 Query: 339 WPADAIEVQLAHANGGSVRGIY-NHAQYLDKRREMMQWWADWLDEKVE 385 +A E L H G V Y A Y ++ R ++ WW+ ++ ++ Sbjct: 364 SSYEAKEKVLDHIVGSGVERAYTQKAIYTEEMRLLLTWWSGYILAMMD 411 >UniRef50_A4SXW8 Phage integrase family protein n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SXW8_POLSQ Length = 434 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 97/407 (23%), Positives = 171/407 (42%), Gaps = 41/407 (10%) Query: 15 KPYRLLD--GNGLYLYVPV---SGKKVWQLRYKIDG--KEKILTVGKYPLMTLQEARDKA 67 P D GLY+ V + K+ W RY K + + +G +L +AR K Sbjct: 19 SPGYHADPESKGLYIQVSKGVNNFKRSWIFRYTSPTLFKRREMGLGSLEARSLADARRKT 78 Query: 68 WTARKDISVGIDPVKAKKASSNNN--------SFSAIYKEWYEHKKQVWSV-GYATELAK 118 R+ + GIDP + + + + +F + E +K W +A + Sbjct: 79 LELRQLVMDGIDPTEDRCKAKSKRITAINNGITFKEAAERCIEGRKAEWKSSKHADQWRN 138 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRR-FEDRGAM----------ERANKARRRCGEV 167 P IG L + I + +++ + +++ E A + R+R + Sbjct: 139 TISTFAYPEIGELRVDQINTSHIAKLLEQEIKNKNGTVEGTFWNVRTETATRVRQRIEVI 198 Query: 168 FRYAIVTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 F + K NPA L A K +K + P LP +I F K L +G Sbjct: 199 FDWCKAHEYIKGDNPARLKGALGHLLPKAKKIQKKSHHPALPFQRIGEFVKDLREHNG-- 256 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 S +A ++L TA RT E+ W + E ++ I A+ MK K H VP++ + +E+L Sbjct: 257 YSALALELLILTATRTSEVIEAKWTEFNLETKVWVIPAARMKAGKEHRVPLNTRAMEILE 316 Query: 280 TLSSITKPVSEFVFAGR-NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-H 337 L +I+ VS ++F G + ++ + A+L +++++ HGFR F E Sbjct: 317 HLKTIS--VSSYLFPGSLHKEESHLSNMALLSMMRKMPKYSGYVPHGFRSTFRDWAAETT 374 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ++P + +E+ LAH Y L+KR +M+ W ++ + Sbjct: 375 DYPNETVELALAHTIKNKAEAAYRRQDQLEKRTVLMEEWGAIVNAAI 421 >UniRef50_C8Q013 Phage integrase n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q013_9GAMM Length = 455 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 96/407 (23%), Positives = 165/407 (40%), Gaps = 27/407 (6%) Query: 3 TVKQIEAAKPKEKPYRLLDGNG--LYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLM 58 + + I + K + K Y + LYL V + K W RY GK + ++ G YP + Sbjct: 9 SDRSISSHKAEAKEYLVPVKGRPKLYLMVRPNETKSWLFRYTSPNTGKSQRISFGIYPSI 68 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGY 112 TL A D + +S IDP +KA +F E+++ K + Sbjct: 69 TLARAHDIWQEYQDLLSKNIDPRDNRKAVKQALLENDDRTFGRFADEYFDTLKTILKPNT 128 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFE-----DRGAM-ERANKARRRCGE 166 + I +I P Q+L ++ + G E+A + + Sbjct: 129 LQRKLNCLKL-LKDSFAETPIDEITPPQMLSMLIDVQNQFVKADGKPTEKAERCASIASD 187 Query: 167 VFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFL-PADQIPAFNKALATFSG--SIVSLI 223 +F+YA G +PA + + + P + D+ + + + + Sbjct: 188 IFKYASARGFCSTDPASMVKSQLIKPVYGHRPAIIQPDKFAKLLQDIDSLKDKVDSNTNS 247 Query: 224 ATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGR----KIHVVPMSDQVVELLT 279 + ++L +R +LR M W ++DF +G+ + VVP+ Q +E+L Sbjct: 248 SLRLLPMLFVRNGDLRRMRWADLDFNEAKWRFQPLKGEGKEHMVRDMVVPLPRQAIEILQ 307 Query: 280 TLSSITKPVSEFVFAGRN-DKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-H 337 I SEFVF + K I +N +K++GY+ + HGFR T++ E Sbjct: 308 HQYKINGH-SEFVFYSPSAKKNGIISDNTANKHLKELGYQNVHCVHGFRASAKTMLQEQL 366 Query: 338 EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 ++PA +E+ L H Y ++L+ R EMMQ WAD+LD Sbjct: 367 KYPAVIVEMGLGHITKDQNGTAYGRFEFLEDRAEMMQTWADYLDALR 413 >UniRef50_A6X006 Phage integrase family protein n=2 Tax=Alphaproteobacteria RepID=A6X006_OCHA4 Length = 426 Score = 310 bits (794), Expect = 9e-83, Method: Composition-based stats. Identities = 81/412 (19%), Positives = 154/412 (37%), Gaps = 36/412 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKE---KILTVGKYP 56 LT I+ +P +K D G + V +KV+ + ++ G K T+G Y Sbjct: 7 LTKSYIDNLRPTDKDAIYWDSELKGFGVKVTPKNRKVFLVMHRPKGHTGAAKKYTIGTYG 66 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNS---FSAIYKEWYEHKKQVWSVGYA 113 T+Q+ARD+A + S G D ++ S + + E+ + Sbjct: 67 EWTVQQARDRAREVLTEGSKGNDVGAIERVERQRKSSDILTDLVDEFLKKHAAQNK--TH 124 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 E ++ + ++L G I + +L V+ DRGA AN+ + + + Sbjct: 125 DETKRILERELLSKHGKKSIHVVTKHDILSVLEGIRDRGAPYMANRVLAAIRKFMNWCVS 184 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 +PA ++ + L AD+ A A + ++L TA Sbjct: 185 RDIIAISPANGIS--LPTREVSRDRVLTADETRAALMAAKSVGYPYG--NIVELLFLTAQ 240 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV---SE 290 R E+ M W ++ + TI A +K K H V +S + LL ++ S+ Sbjct: 241 RRDEVGDMRWSELNLDKATWTIPAERVKNGKAHDVHLSKDALALLHSIPRFVSADNVESD 300 Query: 291 FVFAGRND-------KKKPICENAVLLVIKQIGYEG----------LESGHGFRHEFSTI 333 VF + K K + +L V++++ + H R +T Sbjct: 301 LVFTTTGNTPFSGYSKSKTTLDKKMLEVLQKMAEDKGVNPELVKLTPWRLHDIRRTVTTE 360 Query: 334 MNEHEWPADAIEVQLAHANG--GSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 +++ + L H +G V +Y ++ +R++ + W D L++ Sbjct: 361 LSKLGVAIHVADAILNHKSGVISGVAAVYQKNAFIQERQDALNKWCDHLNKI 412 >UniRef50_C5V760 Integrase family protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V760_9PROT Length = 384 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 107/392 (27%), Positives = 182/392 (46%), Gaps = 17/392 (4%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 +LT I+ AKP+EKPY + D GL++++ V G K ++ + K+DGK KI+ +G + M Sbjct: 3 ILTTVAIKNAKPEEKPYLIYDSKERGLHVHISVVGTKTFRFKTKLDGKAKIIKLGDFKHM 62 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQV--WSVGYATEL 116 TL++AR +A+ I GIDP + +F+ + KE+ K+ + G + Sbjct: 63 TLEQARQRAFDLNVQIQNGIDPTV--QIVPEFKTFAEVSKEFVAWKRDEFGRAEGTIRKY 120 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D+D+LP I++I + + VI + R + A K V +AI G Sbjct: 121 QECLDNDLLPAFANTSIKEIHTKESVAVIEKINAR-SNSLAIKNIEMLNMVVMFAIQRGY 179 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 +L+ +K K P + + + + + + A + + LR Sbjct: 180 RDSYTQLNLSGLIKEKPVK--PKIMPSSLKDTFDKIDQYP-TFIMRCAITIQFHVFLRGS 236 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+ W+ +DFE + + A MK ++ H+VP++ Q +ELLT L S T S F+F Sbjct: 237 EIMGGRWEEIDFEKKQWVVPADRMKMKRTHIVPLTSQTIELLTKLKSATGD-SAFLFPSS 295 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSV 356 + I +A+ + + HG R T M +++ +E QL+H + Sbjct: 296 KSV-EHIGRDALSKAFRAADLK--IVPHGCRTLAGTWMRNNKYLPHLVETQLSHCESNQI 352 Query: 357 RGIYN---HAQYLDKRREMMQWWADWLDEKVE 385 Y H YLD+RR MMQ W++ L E + Sbjct: 353 AAAYQTEPHMLYLDERRGMMQEWSNHLSESAK 384 >UniRef50_A6VNS1 Phage integrase family protein n=7 Tax=Pasteurellaceae RepID=A6VNS1_ACTSZ Length = 427 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 107/414 (25%), Positives = 182/414 (43%), Gaps = 33/414 (7%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMT 59 L+ QI AAKPK+K Y L DG GL L + +G K W Y K T+G+YP ++ Sbjct: 8 LSAAQINAAKPKDKIYYLSDGLGLRLAIKPNGTKTWLFNYTKPYIKKRTDKTIGQYPSVS 67 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHK------KQV 107 L +AR KA R+ ++ IDP + + N+FS + EW ++ ++ Sbjct: 68 LADARAKAHEFRELLAKNIDPHQNEIEKEKQERLPMSNTFSHVANEWLVYREKIGMERKD 127 Query: 108 WSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV 167 +S T+ + +D + I+G ++++ L ++ RG K + Sbjct: 128 YSEKTKTDTIRRV-NDAIEILGDTSFKELKLQHGLALLDAHRTRGQYTEMKKRLFVLKSI 186 Query: 168 FRYAIVTGRAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 YA G N L + + + K+F + ++P F L + SL+A Sbjct: 187 AEYAERFGYWDRNEWRYLGEDLPSPDKNKHFAAIHYKELPEFLFELRKANIHYSSLLAIL 246 Query: 227 VLRYTALRTKELRSMLWKNVDFENRI-----ITIDASVM-KGRKIHVVPMSDQVVELLTT 280 R E + ++ + +T+ + KG + H++P+S Q +LLT Sbjct: 247 WGLLNVTRASETVGAKFSDISENENLPGELVLTVQVNKGGKGARDHLIPLSRQAGKLLTF 306 Query: 281 LSSITKPVSEFVFAGRNDKKK--PICENAVLLVIKQIG---YEGLESGHGFRHEFSTIMN 335 + S+++F + + I VIK +G Y+G+ + HG R FS+ N Sbjct: 307 IRK--NSTSDYLFPAAYKRGRLVHINPQTPNDVIKSMGAGKYKGIMTNHGMRTLFSSYCN 364 Query: 336 ----EHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 E + IE+ L+H NG VR YN A+YL R + +Q WAD+++ + Sbjct: 365 DNRLELGLDPEIIEICLSHLNGDKVRNAYNRAEYLPYRLKTLQAWADYVELCAK 418 >UniRef50_Q31FR8 Tyrosine recombinase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FR8_THICR Length = 396 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 109/396 (27%), Positives = 176/396 (44%), Gaps = 20/396 (5%) Query: 2 LTVKQIEAAK-PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYK--IDGKEKILTVGKYPLM 58 L+ QI A P K L DG GL + + K ++ RY+ ++ K L +G YP M Sbjct: 5 LSDVQIRKAVHPSTK--SLSDGKGLSIEIMPK-AKRFKFRYQRPVNKKINNLVLGYYPSM 61 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 +L+ AR+ A R+ + GIDP + + F I + + + K WS + Sbjct: 62 SLKAAREIAQQYRELLKKGIDPKYQTSSEKVD--FDHIIQLYLKKGKADWSEKHFNTTKG 119 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 +++ + G + I + ++ G+ A K + A + G K Sbjct: 120 RYENFLKNPFGNRDAAQITSFDIYNLLESVAQSGSYGTAEKLSYIISGAYSQAAILGMVK 179 Query: 179 YNPAPDL-ADAMKGYRKKNFPFL------PADQIPAFNKALATF-SGSIVSLIATKVLRY 230 +NPA + K + + P ++++ F + +I A + Sbjct: 180 FNPAAGVMKQVTKTKKTQQMPHFNLTRKGESERLGRFLNDIKALNKTNIAVKTALLLSPL 239 Query: 231 TALRTKELRSMLWKNVDFENRIITIDASVMKG-RKIHVVPMSDQVVELLTTLSSITKPVS 289 +R+ L S+ ++ D +N+ + I+A MK +VP+S Q + LL TL + TKP Sbjct: 240 LFMRSGSLASLKLESYDKDNKWLLINAEDMKKDHSDFIVPLSTQAINLLETLIAATKPK- 298 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQL 348 +VF R K I A+ + G+ + HG RH +T + E + + E+QL Sbjct: 299 IYVFESRASKLGHIRIEAINKAKSRSGWRFDDVTIHGLRHTATTYLTEIGFDYEVTEMQL 358 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 H G VRGIYN A +LDKRREMMQ WAD+LD Sbjct: 359 HHKLVG-VRGIYNKAMHLDKRREMMQKWADYLDNLR 393 >UniRef50_B9R123 Site-specific recombinase, phage integrase family protein n=3 Tax=Alphaproteobacteria RepID=B9R123_9RHOB Length = 451 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 97/415 (23%), Positives = 174/415 (41%), Gaps = 43/415 (10%) Query: 2 LTVKQIEAAKPKEKPY----RLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 LT +++ K + + +GL + + SG K W LR + K + + +G YP Sbjct: 29 LTPLEVKRLKNSGRGGNELHFVGGVSGLAIQLLSSGGKTWILRTTVGYKRRDIGLGGYPD 88 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNN--------SFSAIYKEWYEHKKQVWS 109 ++L +AR++A ++ I G+DP++ +K+ + SFS + K Sbjct: 89 VSLAQARERARETKELIRQGVDPIEHRKSLQSQLVASQMRGLSFSDAVDRYLSVKSAELR 148 Query: 110 -VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + + A LP +G + + +I +L V++ E A++ R R V Sbjct: 149 NEKHKEQWASTLQTYALPHLGKMLVDNITTQDILLVLQPIWTD-KTETASRLRGRIEAVL 207 Query: 169 RYAIVTG-RAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIV 220 ++ V+G R NPA L K + N+P + + ++ + L G+ Sbjct: 208 SWSTVSGHRTGENPARWAGNLKELLPSPSKIAKSGNWPAIALVEADSWFEGLRLRDGT-- 265 Query: 221 SLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTT 280 + A + L A R+ E+R W +D + + I MK K H VP+S + LL Sbjct: 266 AARALEFLALCASRSGEVRKATWSEIDHKQKTWVIPGERMKVGKDHRVPLSATALALLDA 325 Query: 281 LSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQI----------GYEGLE-----SGHG 325 L + S F+F P+ + A+ V++++ G+ HG Sbjct: 326 LPK--REDSPFIFPAPRGG--PLSDMALSAVMRRMHSVELDNGRPGWRDPRNGHPAVPHG 381 Query: 326 FRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 R F E + D E+ L+H+ G V Y + +++RR MM WA++L Sbjct: 382 LRSTFRDWAAESGFARDMAEIALSHSVGSEVERAYRRSDLIERRRGMMSAWAEFL 436 >UniRef50_D1R6D1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6D1_9CHLA Length = 464 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 84/422 (19%), Positives = 157/422 (37%), Gaps = 44/422 (10%) Query: 4 VKQIEAAKPKEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKID-----GKEKILTVGKYP 56 + +PKEKPY + D GL L V +G K W Y + +E+ +G + Sbjct: 33 DDYCQKLQPKEKPYYVRDSQVKGLVLRVKPTGSKSWIFCYTVPCHKRKWRERKKGLGCFK 92 Query: 57 L-------MTLQEARDKAWTARKDIS-VGIDPVKAKKASSNNN--------SFSAIYKEW 100 ++++ AR +A + ++ G DPV+ K+ + +++ W Sbjct: 93 GGRTGVAGVSVKTARTEAERMKHEVRHNGADPVEDKRKRAAEVIREQASRVLVKDLFERW 152 Query: 101 YEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKA 160 A E +M D++P IG L I+++ + E+ + RG A Sbjct: 153 ANTDLVNRKDKGA-EARRMMLKDVIPSIGELNIKEVRKGHITEITDQLLQRGVNRMAKVV 211 Query: 161 RRRCGEVFRYAIVTGRAKYNPAPDLADA-MKGYRKKNFPFLPADQIPAFNKALATFSGSI 219 ++FR+A+ +++P ++ + G + L D+I L++ + Sbjct: 212 FSLIRQMFRFAVTRDLLEFDPTAAISKTTIGGANVERDRVLSEDEIQELGIKLSSAGMAD 271 Query: 220 VSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLT 279 + IA ++ T R EL W + DF ++ I + K + H++ +S L T Sbjct: 272 TATIAIWLVLGTCCRIGELLKARWSHFDFNRKLWRIPSENSKNDREHIIFLSLFTFSLFT 331 Query: 280 TLSSITKPVSEFVFAGRNDKKKPICENAVLLVI------------------KQIGYEGLE 321 L +IT E+ F +C + I + GL Sbjct: 332 QLKAITGE-GEWCFPASRLDDHHVCPKTITKQITDRQRSLPNLKNRTKNNAALMLSRGLW 390 Query: 322 SGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 H R +T+M + E L H V+ IY Y + + + + L+ Sbjct: 391 KPHDLRRTGATLMTALGVLPEVAERCLNHTEENRVKRIYQRHTYESEMKMAWEKLGNHLE 450 Query: 382 EK 383 + Sbjct: 451 KL 452 >UniRef50_Q5LLE0 Site-specific recombinase, phage integrase family n=2 Tax=Rhodobacteraceae RepID=Q5LLE0_SILPO Length = 400 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 149/391 (38%), Gaps = 18/391 (4%) Query: 2 LTVKQIEAAKP-KEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLM 58 LT K IE+ KP K D GL L + SG K + L +I GK + LT+G++ ++ Sbjct: 5 LTTKFIESQKPNPSKRLDFRDELMPGLVLRISTSGTKTFCLHKRISGKMRRLTIGRFGVV 64 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATELAK 118 +L EAR++ +I G + + + ++ E +V + + + Sbjct: 65 SLAEARERVRKVLYEIETGRFEDRTGVEVETKPTLGDVIPDYIEKHAKVHNRDWKRK-EA 123 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 + + I +I+ +++ + A AN+A + + + G Sbjct: 124 LLAK--FAALHVKRIDEIKRADVVKACD-LIHKSAPVSANRALAHLKHLMGWCVERGMID 180 Query: 179 YNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 +P + + L D++ A A K+L + R E+ Sbjct: 181 ASPIAGMKPL--SKERSRERVLTDDELGALWTACDAEGYPFG--DCMKLLILSGQRRAEV 236 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 M W +D E R+ T+ + K + H VP++D ++++L + S++VF Sbjct: 237 AEMRWTELDLEKRLWTLPSQRAKNGRQHTVPITDAMIDVLRRVPRFLG--SDYVFT-TTG 293 Query: 299 KKKPICENAVLLVIKQIGYEG--LESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG--G 354 K + + + EG H R ST M P E L H G Sbjct: 294 KSPVSGFGRLKDRLDKALPEGTEPWIIHDLRRTMSTNMAMLGVPQPVTEALLNHKTGVVS 353 Query: 355 SVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 V IYN Y D++ E ++ W L + + Sbjct: 354 GVAAIYNVYSYTDEKCEALEQWNRHLTKMTQ 384 >UniRef50_Q8DF52 Phage integrase n=1 Tax=Vibrio vulnificus RepID=Q8DF52_VIBVU Length = 452 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 109/429 (25%), Positives = 189/429 (44%), Gaps = 57/429 (13%) Query: 9 AAKPKEKPYRLLDGNGLYLYVP----VSGKKVWQLRYKID--GKEKILTVGKYPLMTLQE 62 + + +K + DG+ LYL + KK WQ Y K LT+G YP +TL++ Sbjct: 15 SLQDGKKEQLISDGDNLYLRLRLGKNKKTKKSWQFNYHHPLTKKRIKLTIGNYPALTLKD 74 Query: 63 ARDKAWTARKDISVGIDPVKAKKA------SSNNNSFSAIYKEWYEHK-----KQVWSVG 111 AR KA + + IDP + ++ + F + ++W+E K K+ Sbjct: 75 ARKKAENYLELLEKNIDPQEYERTGGINAIDPDKRLFKDVAEKWFEEKILAEDKKKRQEK 134 Query: 112 -----------------------------YATELAKMFDDDILPIIGGLEIQDIEPMQLL 142 Y+ ++ D+ ILP +G + I +E Sbjct: 135 IDDANKRAKDEGREKASEQELEAVLRDIRYSKDIRGRLDNHILPALGNIPITKMETYLAQ 194 Query: 143 EVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPA 202 E ++ +G +K + V YA G K NP DL++ RK+ P + Sbjct: 195 EALQPSYAKGIN--MDKICQISSRVMGYAKKLGYMKSNPLSDLSEVFVNKRKQKQPSIKP 252 Query: 203 DQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKG 262 + + KA+ + + V+ ++ +T R E+ M W VDFEN +I I + MK Sbjct: 253 EGLSELMKAMGERNITKVTRAGFEMQMHTLARASEIAKMRWDEVDFENNLIKIPSYRMKR 312 Query: 263 RKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG-RNDKKKPICENAVLLVIKQIGYEGLE 321 H +P++ LL L + + E+VF + + + ++ +K+ G++G Sbjct: 313 LNEHFIPLTKYTRGLLEYLKPFSSHL-EYVFPADPRSSRPHMNQQSINANLKRAGFKGEL 371 Query: 322 SGHGFRHEFSTIMNEH-------EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQ 374 HGFRH ST +N+ ++ AD IE LAH + +R IYN A+Y++ RRE+++ Sbjct: 372 VSHGFRHMGSTFLNDSKKYGANEKFDADVIEACLAHCDNDKIREIYNSAEYIEMRREILE 431 Query: 375 WWADWLDEK 383 +W D++ E+ Sbjct: 432 FWGDYIVEQ 440 >UniRef50_B6JEM3 Phage integrase n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JEM3_OLICO Length = 390 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 170/393 (43%), Gaps = 24/393 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL---- 57 L+ +I+A KP DG+GL++ V +G + W Y+ + + +G Y Sbjct: 6 LSETKIKAI---SKPGIYGDGDGLFIRVQKTGSRNWLFVYRRGQQRNEIGLGGYGQGTAP 62 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVW-SVGYATEL 116 ++L AR+KA R+ ++ G DP ++ A +F + ++ K+ W + +A + Sbjct: 63 VSLPLAREKADAIRQQLARGEDPRASRNAIK-PKTFGEVMEQLLTAKESEWTNPKHAEQW 121 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 P + L + DI + + I E A + R R V YAI Sbjct: 122 KMTLRTYAKP-LHRLPVADIVMGDVKDCILPHWAE-RPETAARLRSRIQAVIDYAIAHEW 179 Query: 177 AKY-NPAPD---LADAMKGYRK---KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLR 229 NPA L M +K + L P +AL SG+ + A + + Sbjct: 180 RSAGNPARWGGLLEKVMPKRQKLSRGHHAALAYADAPQTIEALRHSSGT--AARAVEFIA 237 Query: 230 YTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVS 289 T R+ E R + VD + + T+ A MK K H+VP++ + ++++ + + Sbjct: 238 LTVARSGEARYSTFAEVDVKAKTWTVPAERMKAGKEHIVPLTARALQIVEAMRQ--RATG 295 Query: 290 EFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE-HEWPADAIEVQL 348 +++F G D KPI + A++ ++ + + HG R F + ++P D E+ L Sbjct: 296 DYIFGGAQD-SKPISDTAMVKALRLASPDKAATLHGLRSTFRDWAGDKTKFPRDIAEMAL 354 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 AHA G Y + L +RR++M W +L+ Sbjct: 355 AHAVGDETERAYRRSTALAQRRKLMDAWERYLN 387 >UniRef50_A6U968 Phage integrase family protein n=2 Tax=Rhizobiales RepID=A6U968_SINMW Length = 391 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 102/397 (25%), Positives = 172/397 (43%), Gaps = 28/397 (7%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYP---- 56 +LTV +I+ + PK K L DG+GL+L+ SG + + Y G+ + + +G Y Sbjct: 5 LLTVTEIKNS-PKPK---LRDGDGLWLHTSSSGNRHFVFIYIRHGRRREMGLGTYGTGTG 60 Query: 57 LMTLQEARDKAWTARKDISVGIDP---VKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGY 112 ++L AR KA R + G DP + ++ +F + + + W + Sbjct: 61 QVSLAAARTKAEEIRTILGRGGDPFTEMGERQEKVKPTTFGQCADDLVDAMESQWRNEKH 120 Query: 113 ATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 + + I L + ++ ++ V++ A E A++ R R +V +A Sbjct: 121 RAQWRMTLTEYAK-AIRKLPVAEVTTDDVVRVLKPIWSTKA-ETASRLRGRIEKVLDHAK 178 Query: 173 VTGRAK-YNPAPD------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIAT 225 V G NPA + ++ + +P +PAF K + SG V A Sbjct: 179 VRGLRTGENPARWKGHLDHILPKAGKLKRGHHAAMPYADVPAFIKKIREASG--VGARAL 236 Query: 226 KVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT 285 + TA RT E W DF + T+ A MKG + H VP++D+V+ +LT + Sbjct: 237 EFTILTASRTGETMGAKWAEFDFRENVWTVPAERMKGGREHRVPLTDRVLAVLTEMKK-- 294 Query: 286 KPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN-EHEWPADAI 344 + V++FVF G + PI + V+K + HGFR F + E E+ + Sbjct: 295 RSVNDFVFPG-SKANTPISNMTMTKVMKTY-EADAFTVHGFRSAFRDWASEETEFQGEVA 352 Query: 345 EVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 E LAH G Y L+KRR++M+ W + + Sbjct: 353 EAALAHITGDETERAYRRGDVLEKRRKLMEAWETYCE 389 >UniRef50_Q7V8P5 Phage integrase n=3 Tax=Cyanobacteria RepID=Q7V8P5_PROMM Length = 422 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 110/420 (26%), Positives = 183/420 (43%), Gaps = 37/420 (8%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPV---SGKKVWQLRYKIDGKEKILTVGKYPL- 57 LT +++ + K K Y G+ LY+ V SG K + + + +GK+ + +G + Sbjct: 3 LTEREVRSLSVKSKRYSRSVGDSLYVLVEPVKGSGGKSFVGKMRSNGKQIDVRIGVFGKG 62 Query: 58 ---MTLQEARDKAWTARKDISV-GIDPVKAKKASSNN-------NSFSAIYKEWYEHKKQ 106 TL+ ARD+ + R G DP + +K + + + + K Sbjct: 63 PGQWTLKAARDEWFRLRSWYRETGRDPRELQKDEKRQLAKQSSDQTLNELVDSYLIACKT 122 Query: 107 VWS--VGYATELAKMFDDDILPIIG-GLEIQDIE----------PMQLLEVIRRFEDRGA 153 + + ++I+P +G + + + E+ E RG+ Sbjct: 123 KYKQSETTIKDKKNKLSNEIIPALGGSTPVSRLGWDEKSKGRTGREAVFEITDSIEKRGS 182 Query: 154 MERANKARRRCGEVFRYAIVTGRAKY--NPAPDLADAMKGYRKKNFPFLPADQIPAFNKA 211 + +A K +F YAI G + NPA G+ ++ P L D++P Sbjct: 183 LNQARKVLGVMRHLFDYAIERGWMERGQNPAVQARSVGAGHEVQHNPCLSWDELPQLLDD 242 Query: 212 LATFSG--SIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVP 269 L G S V L A K+ T LR L M W VD+ + T+ S MK K H VP Sbjct: 243 LNRNKGNGSQVVLAAIKLDLMTFLRVGSLVPMRWDEVDYAANLWTVPGSRMKSGKNHWVP 302 Query: 270 MSDQVVELLTTLSSITKPVSEFVFAGRNDK-KKPICENAVLLVIK-QIGYEGLESGHGFR 327 ++D + +LL L I ++VF + K I E+A+ +K ++GY G ++ HG R Sbjct: 303 LTDPIKDLLAHLRKINGDQ-DYVFWSPRGRSKPHIDESALNQHLKVRLGYGGRQTAHGLR 361 Query: 328 HEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWAD-WLDEKVE 385 T E ++ A+ I+ Q+ HA G VR Y+ +Q LD+R + M+ W D LD+ +E Sbjct: 362 SLPLTAGQEVLKFSAEVIQRQMDHAVGDKVRQAYDKSQLLDERWKFMRAWCDALLDQGLE 421 >UniRef50_Q1R2C9 Integrase-like protein n=9 Tax=root RepID=Q1R2C9_ECOUT Length = 404 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 82/401 (20%), Positives = 162/401 (40%), Gaps = 22/401 (5%) Query: 2 LTVKQIEAA--KPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 L+ + + K ++K D +GL + V G+ V+Q RY+ GK + L +G YP Sbjct: 3 LSDAWLRSVVGKERDKVLVKSDRDGLSVRVSPKGRVVFQYRYQWAGKGERLDIGTYPATG 62 Query: 60 LQEARDKAWTARKDISVGIDPV----KAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115 L+EAR++ R ++ +P K+ ++ + ++ + WYE V + + + Sbjct: 63 LKEAREEVIRLRGELESNRNPRLVKQAEKRKATEAMTVESVIRAWYEAY-CVKNKKGSEQ 121 Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175 + + F+ + IG + LEV+ + A++ + +A Sbjct: 122 ILRSFELHLFSKIGNIPHDAATLHDWLEVLEPLSTK-TPAIADRLLINAKQAHVWAYKRK 180 Query: 176 RAKYNPAPDLADAMKGYRK-KNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALR 234 + P D+ RK + FL D+I A+ K+L + R Sbjct: 181 LIETRPLSDITGKDMDIRKGQKKRFLTHDEIKILYAAIDGSRMVPKYRAFIKLLLHFGCR 240 Query: 235 TKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSIT---KPVSEF 291 + EL + + DF N++ T+ K +I P+ ++E + L S+ Sbjct: 241 SSELITARVDDFDFINKVWTVPPERHKTGEITGEPLKRPIIEPVEELIKYAISMNNGSDM 300 Query: 292 VFAGRNDKKKP-------ICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADA 343 +F ++ + N + +++GY+ S H R T ++ P Sbjct: 301 LFTKEGSREPVGRTSLQSLPYNLMQYAWRRLGYQFPHWSLHDLRRTARTNFSDLTAP-HI 359 Query: 344 IEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 E+ L H G V +Y+ + YL+++R+ Q W + ++ V Sbjct: 360 AEIMLGHKLPG-VWQVYDKSDYLEEQRKAYQAWWERVESIV 399 >UniRef50_A3JW30 Site-specfic recombinase, phage integrase family protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW30_9RHOB Length = 389 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 163/385 (42%), Gaps = 17/385 (4%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMT 59 LT + K P R D GL LYV SG+ W R ++G + + +G P+ T Sbjct: 4 LTAAFVRTVK---NPGRYSDRGAVGLQLYVKKSGRSYWVQRLTVNGIRRDIGLGSPPITT 60 Query: 60 LQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWS-VGYATELAK 118 L EAR+ A+ ++ G DP+ K+ + SF ++ W A Sbjct: 61 LAEAREVAFENKRIARAGGDPLAQKRQKAVIPSFEQAARQVVVELGPTWRGAKEAASFIS 120 Query: 119 MFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAK 178 + + P IGG + +++ + +I + A A + + R VF+++I Sbjct: 121 TMECYVFPRIGGSRVSNVQSSDVRNIIMDV-RKTAPTVAARLQTRISAVFKFSIAKNWRT 179 Query: 179 YNPA--PDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 NPA LA ++ K LP Q+ A+ + + +A + TA R+ Sbjct: 180 DNPATSSALALPKPTHKPKPRVSLPYLQVSGCIHAVNNSHAWVGTKLAIEFTILTASRSG 239 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 E+R W +D + + + MK H VP+S++ + +L I S +F Sbjct: 240 EVRKAEWCEIDGD--LWNRPSEHMKEEIAHSVPLSERALAILEKAQEIN-NESGLIFPAP 296 Query: 297 NDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQLAHANGGS 355 + + + +IK++G+ HGFR F T E + + EV LAH+ GG Sbjct: 297 RGG--MLSDMTMSKLIKELGFAAD--VHGFRTSFRTWSQEQTNFAWEVGEVALAHSVGGK 352 Query: 356 VRGIYNHAQYLDKRREMMQWWADWL 380 Y + YL+KRR MM W+ +L Sbjct: 353 SERAYARSDYLEKRRLMMAAWSSYL 377 >UniRef50_C8PUK8 Phage integrase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PUK8_9GAMM Length = 446 Score = 303 bits (777), Expect = 7e-81, Method: Composition-based stats. Identities = 92/415 (22%), Positives = 178/415 (42%), Gaps = 37/415 (8%) Query: 4 VKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID--GKEKILTVGKYPLMTLQ 61 K I+A K+ Y + GL L + +GK ++ RY GK +T+G YP +L Sbjct: 13 DKFIKAGVSKDTSYPIAGFKGLELRIRPNGKAEFRHRYTHPYTGKRPYMTLGSYPAFSLA 72 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN------NSFSAIYKEWYEHKKQVWSVGYATE 115 +A+ ++ IDP+ K+ + N+F A+ K+W + A + Sbjct: 73 QAKQAYNDNMALLAQTIDPLTHKEQENAKQAYALDNTFEAVAKDWLNEQTNNPDYVRAKQ 132 Query: 116 LAKMFDDDILPI---IGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 172 ++ + P+ G + I I Q+L ++R + + +++ N+ + G +F +A+ Sbjct: 133 TIVNWEYQLKPLIATFGKMPIGSITTPQVLRLLREIQ-KTHIQKGNRVKAIAGRIFAHAV 191 Query: 173 VTGRAKYNPAPDLA--DAMKGYRKKNFPFL-PADQIPAFNKALATFSG-SIVSLIATKVL 228 + G ++NP LA A+K R + P L + K + + + ++L Sbjct: 192 INGLIEHNPVLQLAGARALKPTRSDHRPALITPAEFAELLKEIDNITNAKLFQKEILQLL 251 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHV----VPMSDQVVELLTTLSSI 284 T +R ++ +M W ++ E ++ + K R V VP++ Q + +L + I Sbjct: 252 ALTFVRIGDVCAMKWADIHLEAKMWVFEPQKGKNRHDMVDCLVVPLAPQTIAILERMHEI 311 Query: 285 TKPVSEFVF-AGRNDKKKPICENAVLLVIKQ--------------IGYEGLESGHGFRHE 329 T + E+VF G+ K + + ++ GY + S HGFR Sbjct: 312 TGGM-EYVFYTGKRKKGQHADPQQINRILNDPSMNKAGMGKNYCGKGYLNVHSPHGFRAS 370 Query: 330 FSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEK 383 T++ E + E+Q + YN + +++R +MM WA++LD+ Sbjct: 371 AKTLLMERLGYNHLITEIQSGRSMPDVYGNTYNRMEAINERIKMMNDWANYLDQL 425 >UniRef50_A0Q3W3 Phage integrase n=8 Tax=Francisella RepID=A0Q3W3_FRATN Length = 413 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 111/406 (27%), Positives = 185/406 (45%), Gaps = 38/406 (9%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT ++++ K K YRL DGNGLY+ V +G K WQ RY K K L +G YP ++L+ Sbjct: 5 LTASKLQSLKATGKDYRLNDGNGLYIKVSKAGSKSWQFRY----KGKWLGIGSYPAISLK 60 Query: 62 EARDKAWTARKDISVGIDPVKAKKASS--NNNSFSAIYKEWYEHKKQV-----WSVGYAT 114 +ARD+A+ + ++ G DP K+ +NN FS + + +E K S Sbjct: 61 QARDEAFKYNQMLAGGKDPKLEKEKGKYQDNNLFSIVSAKAFETKDPSKPYGWKSEEVYN 120 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 +++ ILP + I DIEP QL ++ K + +F YA+ Sbjct: 121 RNLSIYNRFILPSLKTFNINDIEPYQLAGILE----TTTPSNQRKIKNLLNMIFTYAVGK 176 Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLPADQ----IPAFNKALATFSGSIVSLIATKVLRY 230 G KYN A D+ + + F F+ + + + G + +A K+ Sbjct: 177 GILKYNIARDIQAEKEDPK--GFEFINPVEDKYNFSQLLNDIYNYKGQYNTKMALKLAVL 234 Query: 231 TALRTKELRSMLWKNV---DFENRII---TIDASVMKGRKIHVVPMSDQVVELLTTLSSI 284 R + SM W+++ + + + I I A MK + P+S Q +LL + Sbjct: 235 VGFRPNNIVSMKWEDIQEANIDGKKIPFVFISADNMKMSRDFRQPLSKQAYKLLMEIKEY 294 Query: 285 TKPVSEFVFAGRNDKKKPICENAVLLVIKQ-IGYEG----LESGHGFRHEFSTIMNEH-- 337 E+VF KKK I ++ ++ +GY G + HGFR T ++ Sbjct: 295 NGGF-EYVFHSL-SKKKHITIESLSKALRDTLGYNGTDKPKQHTHGFRKSVRTYISSIRS 352 Query: 338 --EWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLD 381 W +D+I + L+H+ ++ IY+ +L +R +M+Q WAD++D Sbjct: 353 KYNWCSDSIRMILSHSKENAIDNIYDKNDFLLERSQMLQLWADYVD 398 >UniRef50_A6X585 Phage integrase family protein n=1 Tax=Ochrobactrum anthropi ATCC 49188 RepID=A6X585_OCHA4 Length = 444 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 84/428 (19%), Positives = 151/428 (35%), Gaps = 51/428 (11%) Query: 2 LTVKQIEAAKPKEKPYRL--LDG--NGLYLYVPVSGKKVWQLRYKID-GKEKILTVGKYP 56 LT K I+AAK E +L D GL + V G K + Y GK +G+Y Sbjct: 6 LTDKTIKAAKVSEGTRKLDLFDTLARGLCIRVGAGGVKTFYFVYSDASGKRVWNKLGEYG 65 Query: 57 L----MTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKKQVWSVGY 112 TL AR +A R ++ G DP K++ + + + + + V S Sbjct: 66 EHTGQFTLAAARKQAKELRGYVAGGNDPAAEKRSERAALTVFDMVENYLT--RAVASRRS 123 Query: 113 ATELAKMFDDDI--------------------LPIIGGLEIQDIEPMQLLEVIRRFEDRG 152 E+A+ ++ +IG +++ D+ L + I +DRG Sbjct: 124 VDEIARRLRKNVSGKDSEGNPLVDDKGKSTASEGVIGNVKLSDLHRRDLTKCIDALKDRG 183 Query: 153 AMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKAL 212 A AN+ + R+A G N ++ + +L D+I KAL Sbjct: 184 AHVEANRLFEDIRAMVRWARGRGDLDENLTENMRKPTET--APRERWLTEDEIKIVWKAL 241 Query: 213 ATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSD 272 + ++ T R E+ M + + + + TI K ++ H VP+S Sbjct: 242 PDADMRESTRRIIRLCLITGQRVGEVSGMTREELSDDATLWTIPGERAKNKQQHKVPLSS 301 Query: 273 QVVELLTTLS--------SITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGL---- 320 ++++ + V + +F P +++ +K++ G Sbjct: 302 LAMQIILEQQADVEALAARKGRDVPDEIFPSP-GFHGPAGADSIPKALKRLDVNGNVLGV 360 Query: 321 --ESGHGFRHEFSTIMNEHEWPADAIEVQLAHAN---GGSVRGIYNHAQYLDKRREMMQW 375 + H R +T M I L H + +Y Y ++ E + Sbjct: 361 PAWTPHDLRRTCATHMEMLGVSPHVIGHCLNHISTTKATVTTAVYARYDYAKEKAEALSL 420 Query: 376 WADWLDEK 383 W+D L Sbjct: 421 WSDRLTAI 428 >UniRef50_B6JJF3 Phage integrase family protein n=2 Tax=Bradyrhizobiaceae RepID=B6JJF3_OLICO Length = 414 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 137/394 (34%), Gaps = 21/394 (5%) Query: 2 LTVKQIEAAKPKEKPYRLLDGN--GLYLYVPVSGKKVWQLRYKIDG---KEKILTVGKYP 56 LT I+A D G + V G+KV+ + Y+ G + + T+G Y Sbjct: 19 LTKSAIDALPTPSHDLVYWDLGCPGFGVKVTPKGRKVFVVMYRTAGSGSRLRKYTIGPYG 78 Query: 57 LMTLQEARDKAWTARKDISVGIDPVKAKKASSN---NNSFSAIYKEWYEHKKQVWSVGYA 113 +TL +AR A G D K AS + + + + A Sbjct: 79 RVTLNQARVAAQKVFAAKLEGRDLAAEKAASRRRIVADRVEDLLEAFIAQHVSQNR--SA 136 Query: 114 TELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIV 173 E+++M ++ + G I +I ++ ++ E RGA ANK + FR+ + Sbjct: 137 REISRMLRREVGAVWGSRSIHEISKRDVIAIVNSIEQRGAPIAANKMLKTIKTFFRWCVG 196 Query: 174 TGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233 +PA + + + L D++ A G ++L T Sbjct: 197 RALLDRSPADGV--PLPAKQVARDRVLSDDELVRVILAARQLGGPYG--NIVEMLALTGQ 252 Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293 R +E+ W ++ R + + K K H + +SDQ V +L ++FVF Sbjct: 253 RREEVARCTWDEINLTTRTWRLPSERTKNGKAHEIYLSDQAVAVLARA----TTGTKFVF 308 Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANG 353 + I ++ H R + M + L H G Sbjct: 309 -SKTGAFAFQGFGPAKDEIDKLSDVTGWRLHDLRRTCVSGMARLGVAPHVADKILNHQTG 367 Query: 354 --GSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 V +Y +L +R+ ++ W + ++ Sbjct: 368 TISGVAAVYQRHDFLAERKAALELWGAHVATIID 401 >UniRef50_Q483M1 Site-specific recombinase, phage integrase family n=3 Tax=Gammaproteobacteria RepID=Q483M1_COLP3 Length = 390 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 160/390 (41%), Gaps = 9/390 (2%) Query: 2 LTVKQIEAAK-PKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60 L+ ++ K P L D +GL + V + R++ +GK++ + +G+YP + L Sbjct: 3 LSDTKLRKIKAPYNGEAELADRDGLSVRVSPKALITFNYRFRWEGKQQRIKLGRYPGLKL 62 Query: 61 QEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEHKK-QVWSVGYATELAKM 119 +AR K R ++ G+DP + S ++N F + + + T Sbjct: 63 IDARKKVNEYRHNLDEGLDPRVVQNESRSHNLFGDMCEAFMTKYVMTELRPKTQTLYKST 122 Query: 120 FDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 179 F+ + P ++I+ + + + + A +R V +A G+ K+ Sbjct: 123 FNKYVTPY-KNIDIERYKYTDWIAYFDWVKKESSSANAGSVLKRFKAVANWAKARGQIKH 181 Query: 180 NPAPDLA-DAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKEL 238 + D+ A+ +++K L D++ + + + + ++L T R E+ Sbjct: 182 SHLIDIPIKAIGSHQQKRERCLEWDEVIGLWRQIESSKSTPQCKTCIQLLLLTGARNAEI 241 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 R D + I + K +K P+S V+EL+ L I E++ AG Sbjct: 242 REARRDEFDLDKNIWLLPPERSKTKKQVRRPLSTGVIELINKLDLIYGQDREYLIAGD-I 300 Query: 299 KKKPICENAVLLVIKQIGYE---GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 K KP+ +AV ++++ H FR T ++EH+ E L H GG Sbjct: 301 KGKPLTTHAVNRFVQRMNNHLKYPHFVPHDFRRTIVTRLSEHKVELHVTEKMLGHELGGI 360 Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 + YN ++D++RE + + + ++ Sbjct: 361 LTR-YNKHDWIDEQREAYELYWQKVTLLLK 389 >UniRef50_D1UFB2 Integrase family protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UFB2_9BURK Length = 431 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 101/397 (25%), Positives = 171/397 (43%), Gaps = 24/397 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKIL-TVGKYPLMTL 60 LT Q+ A +P+ Y + DGNGL + V +G KVW+ RY ++GK + L T+G Y +++L Sbjct: 36 LTESQVRALEPRAARYSVADGNGLVIEVMTTGTKVWRFRYSLNGKRQPLATIGDYRMISL 95 Query: 61 QEARDKAWTARKDISVGIDPVK----AKKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 + AR KA + ++ GI PV + A + + + + + S Y Sbjct: 96 RVARAKAQKYAELVAQGISPVATARRDRGAEAKADVLREAAELYMATEMAGKSDEYRRTT 155 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + D D+LP IGGL ++ + ++ + + RG+ + A R ++ Y I Sbjct: 156 RRALDKDVLPAIGGLPVKSVTAQHVVAICDSIKSRGSPKMALHTRNVIKRLYEYLIARQL 215 Query: 177 AKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRTK 236 A NPA + + L D+I A A+ T S IA +L T +R Sbjct: 216 ATANPAQVVPARSIATFESRTRVLSGDEIGATLHAIDTSSIRRPLKIALHLLVLTMVRKS 275 Query: 237 ELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGR 296 +L W+ D E I A+ +K +V + Q V LL L + + FVF Sbjct: 276 DLVESTWEEFDLEKASWRIPAARLKQDADQLVYLPQQAVTLLRELHR-ARAATRFVFPSV 334 Query: 297 NDKKKPICENAVLLVIKQIGYE-GLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355 +PI ++ + +K +G + H FR S + E HA Sbjct: 335 RGDDRPIAKSTLNQAVKALGLDVEHFVLHDFRRTASVHLREMA----------RHAQEDK 384 Query: 356 VRG-IYNHAQYL------DKRREMMQWWADWLDEKVE 385 HA+++ + R++ Q WAD++D +++ Sbjct: 385 SSAQTRQHARHVEAASAAAEARQIAQRWADFVDARLD 421 >UniRef50_A1WQF8 Phage integrase family protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WQF8_VEREI Length = 419 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 88/403 (21%), Positives = 159/403 (39%), Gaps = 27/403 (6%) Query: 3 TVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGK----KVWQLRYKIDGKEKILTVGKYPLM 58 T K + A P G GL +G W LRY+ G + +G+YP + Sbjct: 8 TDKTLRAWLNTG-PVDRGIGGGLTFVATAAGALKGQASWILRYRFGGGAREKVLGRYPDL 66 Query: 59 TLQEARDKAWTARKDISVGIDPVKAKKASS----NNNSFSAIYKEWYEHKKQVWSVGYAT 114 +L++AR+ R I G+D K+A + +A+ + WY+ + + Sbjct: 67 SLKDAREATRQNRARIQQGVDVAAEKRAERLKAHEQVAVAALAQAWYDRHIA-KTYKHPE 125 Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174 + ++ I P IG L + ++ P+ + +V+ R D G AN A R +F +A+ Sbjct: 126 VVLRVIRRHIEPAIGKLGVTEVRPLHIDKVLTRILDAGTPTVANDALRHLFRMFHFAVKR 185 Query: 175 GRAKYNPAPDLADAMKGY-RKKNFPFLPADQIPAFNKALATFSG-SIVSLIATKVLRYTA 232 NP + G +L +++ AF KA+ + +A +L Sbjct: 186 RWIDANPVSGFEISDAGGFEVSRQRWLNREELAAFAKAMQDTPNFGRQNELAVWLLLALC 245 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 +R EL S W D E + ++ S K + +P++ V+ L + + SE++ Sbjct: 246 VRKMELLSARWTEFDLERGVWSLHPSRTKMNQSIDIPLAAPVLRWLEEVQVFS-CNSEYL 304 Query: 293 FA-----------GRNDKKKPICENAVLLVIKQIGYEG--LESGHGFRHEFSTIMNEHEW 339 F R ++ I + + + + ++ + + H R T M Sbjct: 305 FPPRRLIHMKGGVPRRNRFGHISPDTLNVALLRLPLDDIEHFTVHDMRRTARTHMAALGV 364 Query: 340 PADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 E L H V G+YN Y D+R+ + WA L++ Sbjct: 365 DRFVAERALNHKVRD-VEGVYNQYDYFDERKVALDRWAQLLEK 406 >UniRef50_B4SNF6 Integrase family protein n=2 Tax=Proteobacteria RepID=B4SNF6_STRM5 Length = 397 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 107/395 (27%), Positives = 175/395 (44%), Gaps = 27/395 (6%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ +P DG GLYL V S K W RY+ +GK + +G ++ L Sbjct: 8 LTARRVATIT---EPGYHPDGGGLYLQVTASCAKSWVFRYRFEGKRPEMGLGPLHVIGLA 64 Query: 62 EARDKAWTARKDISVGIDPVKAKKASSNN----NSFSAIYKEWYEHKKQVW-SVGYATEL 116 EAR+ A ARK + G DP+ ++A++ +F + ++ W + +A + Sbjct: 65 EAREAAGAARKMVQSGQDPLAGRRAAAVATASIPTFWEAATAYIAEREAGWTNPKHAGQW 124 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYA-IVTG 175 + + P++G L + IE +L V+R E A++ R+R V + Sbjct: 125 TRTLETYAKPVLGDLRVDRIETEHVLAVLRPIW-TTKTETASRVRQRMEAVLDAVTVQKK 183 Query: 176 RAKYNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVL 228 R+ NPA L + +NF LP ++P+F AL + G + A + Sbjct: 184 RSGENPARWRGHLAVILPKPTAVTKVENFAALPYAELPSFMAALRSRHGE--AARALEFT 241 Query: 229 RYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPV 288 TA RT VD T+ S MK + H VP+S + L I + Sbjct: 242 ILTAARTGMTLGATPGEVDLAAGTWTVPGSRMKAKVEHTVPLSTPALAL--ARPRIKR-- 297 Query: 289 SEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEH-EWPADAIEVQ 347 + +F +P+ ENA+L ++K++GY G + HGFR F +E ++P D E Sbjct: 298 -DLLFPNDLS-NEPLSENAMLALLKRMGY-GYITVHGFRSTFKDWASEMTDYPDDLSEAA 354 Query: 348 LAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 LAH + Y + KRRE+M WA++ + Sbjct: 355 LAHRIRDKAKAAYKRGTMIQKRRELMNSWAEYCAQ 389 >UniRef50_A3WKP7 Site-specific recombinase, phage integrase family protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WKP7_9GAMM Length = 411 Score = 300 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 85/407 (20%), Positives = 167/407 (41%), Gaps = 32/407 (7%) Query: 5 KQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGK-YPLMTLQEA 63 QI+A + R G+GLY + G W +RY GK K +T+ + YP +L +A Sbjct: 4 SQIKALVRAGEDVRKSVGDGLYFRIEQ-GTASWFVRYTYAGKRKTITLSEGYPNCSLADA 62 Query: 64 RDKAWTARKDISVGIDPVKAKKASS--NNNSFSAIYKEWYEHKKQVWSVGYATELAKMFD 121 + +A R + GIDP ++ + ++ ++ +W++ + V + +++ Sbjct: 63 KIQAAAIRSKVKNGIDPQLERRRETGGAIHTVHDLFNDWFDRAVKN-RVKHPGNDERVYR 121 Query: 122 DDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 181 + + +G ++DI P+ + V+ + G +++A +F + I NP Sbjct: 122 NYLKSRLGKYSLKDITPIDVRNVLDELQQTGNKTTSSRALSIMKRMFNHGIKLNLVSSNP 181 Query: 182 APDLADAMKGYR-KKNFPFLPADQIPAFNKALATFSG--SIVSLIATKVLRYTALRTKEL 238 A G L AD+I + + +A +L + R E+ Sbjct: 182 AIYFTGVDVGQDYSPRERSLSADEIKTAFSVFRKQQDIFTRDNYLACLLLLHLGCRKSEI 241 Query: 239 RSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRND 298 S W+ +D E++ K K VP+ +Q++ ++ L + SE+VF R Sbjct: 242 ISSRWEQIDLEDQTWFFP--ENKTSKPITVPIPNQMLPVIEELK-VRCAGSEYVFPSRRR 298 Query: 299 KKK--PICENAVLLVIKQIGYE------------------GLESGHGFRHEFSTIMNEHE 338 K+ I ++ + + ++ + + H R + T++ + + Sbjct: 299 SKRRGYISDDTLNHALAKLFGQKVDSKKQPYPNVLGSAGVDHFTVHDLRRTYRTLLAKLK 358 Query: 339 WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE 385 P E L H G V +YN YL++RRE AD+L+ ++ Sbjct: 359 VPDAIAERCLNHELRG-VLKVYNQYDYLEERREANAKVADFLEPLIQ 404 >UniRef50_Q3J2T0 Putative P4-family integrase n=5 Tax=Rhodobacteraceae RepID=Q3J2T0_RHOS4 Length = 439 Score = 300 bits (769), Expect = 6e-80, Method: Composition-based stats. Identities = 100/417 (23%), Positives = 167/417 (40%), Gaps = 50/417 (11%) Query: 8 EAAKPKEKP-YRLLDGN--GLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQEAR 64 AA P + G GL L + +G K W LR + G + + +G YP + L EAR Sbjct: 15 RAAHPGDGANVWHAVGGVAGLLLQITPTGAKSWLLRTTVAGTRRAMGLGSYPEVGLAEAR 74 Query: 65 DKAWTARKDISVGIDPVKA--------KKASSNNNSFSAIYKEWYEHKKQVWSVGYATEL 116 ++A A++ I+ G+DP++ A + +F+ +W + K + Sbjct: 75 ERAREAKRKIAAGVDPIEERKATRAALAAAQRRSLTFADAADKWIKAKLSDRPEKSQKAV 134 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 P IG L +Q++ P ++ + + A K R + +A V+G Sbjct: 135 RATLTAYSFPEIGALTVQELTPQDVVRALNTIWTA-KPDTATKMRGYLEAILSWATVSGY 193 Query: 177 AK-YNPAPD---LADAMKGY------RKKNFPFLPADQIPAFNKALATFSGSIVSLIATK 226 NPA L + + R NFP +P ++ + + L G + A + Sbjct: 194 RTGDNPARWAGNLKELLPAPSVVAKGRAGNFPAVPVARLADWWEELGQREGMGAT--ALR 251 Query: 227 VLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITK 286 TA R+ E+R LW VD + + + + MK + H VP+S V LL L + Sbjct: 252 FAALTAARSGEVRGALWSEVDLDAALWVVPGARMKMGREHRVPLSGPAVALLRGLPRLAG 311 Query: 287 PVSEFVFAGRNDKKKPICENAVLLVIKQI------------------GYEGLES-----G 323 + +F G + + +V V++++ G+ + Sbjct: 312 -TGDLIFPGPRGG--ILSDMSVSAVMRRMQEDAETEAKMAGRPVSAAGWRDTRTGRPAVP 368 Query: 324 HGFRHEFSTIMNEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWL 380 HG R F E + D E+ LAH G V Y + L++RR MM+ WAD L Sbjct: 369 HGLRSSFRDWAAEVGYDRDMAEIALAHLVGSEVERAYRRSDMLERRRAMMERWADVL 425 >UniRef50_Q98MP8 Probable prophage integrase n=2 Tax=Proteobacteria RepID=Q98MP8_RHILO Length = 402 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 99/407 (24%), Positives = 184/407 (45%), Gaps = 32/407 (7%) Query: 1 MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVG---KYPL 57 MLT+++I++ K +P + LY ++ SG+ W +RY + G+ + +++ + Sbjct: 1 MLTIREIQSLVHKGEPGQWSHTKALYFFIAPSGRPFWAIRYMLKGRRRQMSLTDSIPATV 60 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNN--------NSFSAIYKEWYEHKKQVWS 109 L++ + T R+ + GIDP+ ++A+ +F ++ ++ + W Sbjct: 61 RELKQIELLSETEREKVRKGIDPLAEREAAKAASPEPVRQLVTFKSVALDYIAANRGGWK 120 Query: 110 -VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVF 168 + + + P+IG LE Q I ++L++++ E A++ R R + Sbjct: 121 NAKHVQQWENTLATYVYPVIGHLEPQSITTAEVLKILQPLWA-TKRETASRVRSRVETII 179 Query: 169 RYAIVTGRAK--------YNPAPDLA----DAMKGYRKKNFPFLPADQIPAFNKALATFS 216 A G ++ +NPA K +F +P +IPAF +++A Sbjct: 180 GAAKAKGMSEKPEIWANHHNPARWADNLEFWLNGKQEKNHFSAMPYPEIPAFAQSIAERE 239 Query: 217 GSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVE 276 + A + L TA RT E W +D E + TI AS MK K H VP+S + ++ Sbjct: 240 -DYSTK-ALQFLILTATRTNETLGAEWSEIDTEKAVWTIPASRMKSGKEHRVPLSSEALK 297 Query: 277 LLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNE 336 L+ +L I + ++F G + K + A+L+V++ + G HGFR F E Sbjct: 298 LVASLLRIEG--NPYLFPGA-IRNKSLSNMALLMVMRGLKL-GHYVPHGFRSAFRDWAAE 353 Query: 337 HE-WPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDE 382 +P +E+ LAH V Y ++KRR++M+ W+ +L Sbjct: 354 ETVYPNHIVEMALAHTIKNKVEAAYRRGDLMEKRRQLMEDWSAYLAS 400 >UniRef50_B8GZR1 Bacteriophage P4 integrase n=3 Tax=Proteobacteria RepID=B8GZR1_CAUCN Length = 517 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 108/427 (25%), Positives = 170/427 (39%), Gaps = 54/427 (12%) Query: 2 LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61 LT +++ K DG GLYL V G K W RY + G+ + + +G ++L Sbjct: 93 LTALEVKRL---AKVGMHPDGRGLYLQVHNGGSKSWIYRYTLKGRVRAMGLGPTHRVSLA 149 Query: 62 EARDKAWTARKDISVGID------------------PVKAKKASSNNNSFSAIYKEWYEH 103 EAR +A AR G+D + + +F + Sbjct: 150 EARAQAQAARLLRDQGLDPIAARAAATPPPEPPSPPKTREIAVAEAGLAFKDAAAAYIRT 209 Query: 104 KKQVWS-VGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARR 162 W + + + P+ G + +I+ +L V+ A E A++ R Sbjct: 210 NSAAWRNAKHQAQWSATLATYAYPVFGDRPVSEIDTAMVLSVLEPIWSTKA-ETASRLRG 268 Query: 163 RCGEVFRYAIVTGRAK-YNPAPD-------LADAMKGYRKKNFPFLPADQIPAFNKALAT 214 R V +A V G + NPA L K R ++ LP IPAF + L T Sbjct: 269 RIEAVLDWASVRGHRQGENPARWKGHLDKILPAKSKIARVEHHAALPFSTIPAFMRDLGT 328 Query: 215 FSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQV 274 G + A + TA RT E+ W +DFE R+ T A K RK H VP+ D Sbjct: 329 RPG--AAARALEFAILTAARTGEVIGAQWSEIDFEARLWTQPAERTKTRKEHRVPLCDAA 386 Query: 275 VELLTTLSS--ITKPV----------------SEFVFAGRNDKKKPICENAVLLVIKQIG 316 + +L ++ +T F+FAG + K + A+L ++++G Sbjct: 387 MAILASMREAFLTGRREFLLLYNKPVPDDMPLEGFIFAGMR-RGKGLSNMAMLKTLERMG 445 Query: 317 YEGLESGHGFRHEFSTIMNE-HEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQW 375 + + HGFR F E + + +E+ LAHA G V Y L+KRR++M+ Sbjct: 446 HPD-LTTHGFRSTFRDWAAETTGYQNEVVEMALAHAIAGKVEAAYRRGDLLEKRRDLMRD 504 Query: 376 WADWLDE 382 WA + Sbjct: 505 WAAYCAS 511 >UniRef50_B9KC61 Site-specific recombinase, phage integrase family n=5 Tax=Campylobacter RepID=B9KC61_CAMLR Length = 392 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 104/396 (26%), Positives = 182/396 (45%), Gaps = 27/396 (6%) Query: 2 LTVKQIEAAKP--KEKPYRLLDG--NGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPL 57 LT +++ K +K + D GLY++V SG+K+++ + +T+G+YPL Sbjct: 7 LTDSFLKSVKCDNGKKFIKFSDPSIKGLYVFVYPSGRKLFK---TRQANDTYITLGEYPL 63 Query: 58 MTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYEH-KKQVWSVGYATEL 116 ++L E R+ A + K + G + AK+ F +Y E E+ +K + Sbjct: 64 LSLAELREIAINSHKLKAKGQNISNAKRLK-----FGVLYDEVLENARKSNLAAKTIQRG 118 Query: 117 AKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGR 176 + + I + I DI+ + ++ +++ E + A KA+ +VF YA+ Sbjct: 119 LS-YKEGIFKSLEYKNINDIKRVDIVNILKTIEHKSA--TLQKAKIWINKVFEYALQLEI 175 Query: 177 AKYNPAPDLADAMKGYRKK---NFPFL-PADQIPAFNKALATFSGSIVSLIATKVLRYTA 232 + NP + + + + + P L I + L + TA Sbjct: 176 IENNPVASIKNNIVFKKPNQVIHQPTLLDESDIKEYINTLIHSDIKQSHKNLMLFVLLTA 235 Query: 233 LRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFV 292 R + W +DF+N I TI A MK RK H + +S Q + +L +I V+++V Sbjct: 236 QRPGNVIKATWDEIDFKNEIWTISAQKMKMRKEHNIALSKQAISILKNQYAI--KVNDYV 293 Query: 293 FAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMN----EHEWPADAIEVQL 348 FAG + KK EN K++GY+G++S HGFR F +I N EH D E L Sbjct: 294 FAG-SSKKGCNSENITCNTNKRLGYKGIQSAHGFRAMFRSIANEKQLEHGVSMDIAEQCL 352 Query: 349 AHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKV 384 AH ++ YN ++ ++ +R +MQWW D++++ Sbjct: 353 AHEQKNAILKAYNRSKNIELKRILMQWWGDYIEKLA 388 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.178 0.550 Lambda K H 0.267 0.0547 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,604,693,367 Number of Sequences: 3077464 Number of extensions: 127030298 Number of successful extensions: 394466 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 5159 Number of HSP's successfully gapped in prelim test: 5850 Number of HSP's that attempted gapping in prelim test: 367205 Number of HSP's gapped (non-prelim): 12252 length of query: 385 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 255 effective length of database: 640,326,036 effective search space: 163283139180 effective search space used: 163283139180 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 95 (40.8 bits)