HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/e0347f8a936690ad/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/e0347f8a936690ad/query.hhm DATE Mon Jan 16 21:07:37 2012 LENG 119 match states, 119 columns in multiple alignment FILT 12 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.3763 -2.6250 SEQ >ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH HHHHHHHHHHHHHHHHHHC >ss_conf 9754330366899999977521457776422115789999999999989999970377668863899999999999667688521743104279999999 9999999997378887509 >Consensus mexxxxekktLllsxvxGlcxxasxxxLxxsxVpFSiFPlIaLvLavyxlYQxYlxxpxxxxxpxxaxxcFfiGxfgySAxvkxqyPElGSNFfsxxxxl ilxxWixxkxxxrKxxxax >batch____ MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSV IMVFWIGAKMRNRKQEVAE >UniRef50_A6FGY0(1-119:120) Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FGY0_9GAMM E=1e-14 s/c=0.68 id=39% cov=92% --------KPLYFSFLAGLCGNATFATLTTSEVAFSIFPLIALVLVAYNWYQVYMTSAIESHISKSSLGLFVIGVLTYTTFVRMEYPELGSNFLPLMLVL GLSVWVAKTVGvfDRKAQ--- >UniRef50_B6ENT5(4-120:124) Inner membrane protein n=6 Tax=Vibrionaceae RepID=B6ENT5_ALISL E=1e-36 s/c=1.31 id=36% cov=99% -ENSRNERKTLALSVVTGLCLNAVWVGFTVTEVTFSIFPIIALILAAQGLYQEYLREPKGDDTSLIAVACFFVGLFGHSALVKAQYPEVGSNFFSILVAL ALLLWIGIKVGVLKKKEA- >UniRef50_B4F1H3(1-116:133) Putative membrane protein n=3 Tax=Proteus RepID=B4F1H3_PROMH E=1e-35 s/c=1.29 id=43% cov=97% MEQNRCEKSTLLLSVVIGVALHGSYSTLFNPLTgPWSIFPLISLVLAVYCLYQRYLNQPMTDGMPKLIFSFFLLGLFGYNAYLKTSNPEMGSNFFSSVCI VIIALWIYRQIKQRKR---- >UniRef50_B8KEB4(9-117:128) ATPase of the AAA+ class n=10 Tax=Vibrio RepID=B8KEB4_VIBPA E=4e-32 s/c=1.27 id=37% cov=89% ------EKKTLVLALVAGMCGDAMLSWLTMSQVSFSIFPLIALVLAVQTLYQEYLSKPVSEDIPLVGLACFFVGAFGHSAFIKAQYPDAGSNMLAIFITL GLLLWVAKKLG-------- >UniRef50_A0KF75(7-125:125) ATPase of the AAA+ class n=2 Tax=Aeromonas RepID=A0KF75_AERHH E=1e-26 s/c=1.01 id=35% cov=92% -------KKPLLLALLIGICGDASLTVLSESVVPFSFFPMIALVLAAYQLYQHYRHVSLEGNTPVCMLLCFFIGVFGHSALVKVQYPELGSNFFSLIMML LLLAVLSIKLGisvGKKEK--- >UniRef50_A1SR76(20-129:138) Putative uncharacterized protein n=2 Tax=Psychromonas RepID=A1SR76_PSYIN E=5e-26 s/c=1.07 id=27% cov=87% --------KWLVYTYIIGLSLSACYSMLTKEPVPFSFFAFLTLFFSVNHFYGLYIKEPDNEISIRPAWVSFFIGIFSYSAFIGTQYPELGSNLFSVTLTL ILTIWLIYKL--------- >UniRef50_D2TCM7(5-114:117) Inner membrane protein yijD n=3 Tax=Erwinia RepID=D2TCM7_ERWPY E=7e-26 s/c=1.07 id=63% cov=93% ---TGRDKGTLLLTFLTGLAINGSFAALFSSVVPFSIFPLIVLGLSAWGLHQRYLNRAMPDGMPSLAAAFFLLGILVYSAIVRAEYPDIGSNFVPVIFMV IVVFWIGLRLKRR------ >UniRef50_D1P7M9(1-57:70) Inner membrane protein YijD n=4 Tax=Providencia RepID=D1P7M9_9ENTR E=5e-08 s/c=1.03 id=38% cov=49% ----------------------------------------------------------MPMGLPKFVAGSLFLGMFGYAAILRVQHPEVGSNFIPATVIV IIALWMYTSWKARKR---- >UniRef50_D0I395(1-124:127) ATPase of the AAA+ class n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I395_VIBHO E=2e-34 s/c=1.18 id=44% cov=100% MEQNHQsERKFLLLAVVAGLCGSASLATLFVDSVAFSAFPIIAFVLAVYCFYQQHVNQPLTEGTPIIAFACFLVGAFGYSAFVRMQVPELGGNFFSIIVT MVLAFWVAFKMGwlgnsGKKEEAA- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1772 0 0 K 2 * * * 387 * * * * 2088 * * * * * * * * * * * 2 0 * * * * * * 2024 0 0 Q 3 * * * * * * * * * * * 1591 * 582 * * * * * * 3 0 * * * * * * 2024 0 0 A 4 2562 * * * * * * * * * * 1440 * * * 1807 2504 * * * 4 0 * * * * * * 2160 0 0 N 5 * * * * * 2504 2466 * * * * 2562 * * 1079 * * * * * 5 0 * * * * * * 2160 0 0 Q 6 * 2415 * * * * * * * * * 1807 * 1513 2504 * * * * * 6 288 2466 * 0 * * * 2160 1000 0 D 7 * * 1721 522 * * * * * * * * * * * * * * * * 7 0 * * * * * * 2220 0 0 R 8 * * * * * * * * 871 * * * * * 1142 * * * * * 8 0 * * * * * * 2368 0 0 G 9 * * * * * 2353 * * 539 * * * * * * 3107 * * * * 9 0 * * * * * * 2756 0 0 T 10 * * * * 3392 * * * * * * * 2215 * * * 870 * 2814 * 10 0 * * * * * * 2756 0 0 L 11 * * * * * * * * * 0 * * * * * * * * * * 11 0 * * * * * * 2756 0 0 L 12 2775 * * * * * * * * 971 * * * * * * * 2112 * 3153 12 0 * * * * * * 2756 0 0 L 13 * * * * 3153 * * * * 424 * * * * * * * * * 2814 13 0 * * * * * * 2756 0 0 A 14 1376 * * * * * * * * * * * * * * 1417 2058 * * * 14 0 * * * * * * 2756 0 0 L 15 * * * * 2250 * * * * 1786 * * * * * * * 1484 * 2814 15 0 * * * * * * 2756 0 0 V 16 * * * * * * * 2814 * 1674 * * * * * * * 877 * * 16 0 * * * * * * 2756 0 0 A 17 1115 * * * * * * 1468 * * * * * * * * 2499 * * * 17 0 * * * * * * 2756 0 0 G 18 * * * * * 0 * * * * * * * * * * * * * * 18 0 * * * * * * 2772 0 0 L 19 * * * * * * * 2791 * 601 3570 * * * * * * 3161 * * 19 0 * * * * * * 2772 0 0 S 20 2279 827 * * * * * * * * * * * * * 2119 * * * * 20 0 * * * * * * 2772 0 0 I 21 * * * * * 1230 * 2421 * 1369 * * * * * * * * * * 21 0 * * * * * * 2772 0 0 N 22 * * 2128 * * * 3161 * * * * 1211 * * * 2135 * * * * 22 0 * * * * * * 2772 0 0 G 23 512 * * * * 1744 * * * * * * * * * * * * * * 23 0 * * * * * * 2772 0 0 T 24 * 2862 * * * * * * * * 3570 * * * * 1183 2322 2861 * * 24 0 * * * * * * 2772 0 0 F 25 * * * * 1765 * * * * 1649 * * * * * * * * 2861 2004 25 0 * * * * * * 2772 0 0 A 26 1380 * * * * * * * * * * * * * * 1584 2791 2861 * * 26 0 * * * * * * 2772 0 0 A 27 2421 * * * * 2861 * * * * 2862 * * * * * 1693 2791 3570 * 27 0 * * * * * * 2772 0 0 L 28 * * * * 3740 * * * * 112 * * * * * * * * * * 28 0 * * * * * * 2772 0 0 F 29 * * * * 1363 * * * * * * * * * * 2791 1099 * * * 29 0 * * * * * * 2772 0 0 S 30 * * * 2791 * * * * 2862 * 3570 3161 * * * 2421 3219 2135 * * 30 0 * * * * * * 2772 0 0 S 31 * * 3473 2862 * * * * * * * * 3161 * * 935 2861 * * * 31 0 * * * * * * 2772 0 0 I 32 * * * 2029 * * * 3432 * 3161 * * 2862 3570 * 3473 * 2067 * * 32 0 * * * * * * 2772 0 0 V 33 * * * * * * * * * * * * * * * * 3161 171 * * 33 171 3161 * 0 * * * 2772 1000 0 P 34 1942 * * * * * * * * * * * 784 * * 3570 3740 * * * 34 0 * * * * * * 2772 0 0 F 35 * * * * 171 * * * * * * * * * * * * * 3161 * 35 0 * * * * * * 2772 0 0 S 36 * * * * * * * * * * * * * * * 0 * * * * 36 0 * * * * * * 2772 0 0 V 37 3473 * * * 1826 * * 902 * * * * * * * * * 3432 * * 37 0 * * * * * * 2772 0 0 F 38 * * * * 0 * * * * * * * * * * * * * * * 38 0 * * * * * * 2772 0 0 P 39 2862 * * * * * * * * * * * 213 * * * * * * * 39 0 * * * * * * 2772 0 0 I 40 * * * * 2862 * * 1642 * 1331 2791 * * * * * * * * * 40 0 * * * * * * 2772 0 0 I 41 * * * * * * * 213 * 2862 * * * * * * * * * * 41 0 * * * * * * 2772 0 0 S 42 827 * * * * * * * * * * * * * * 2290 2862 3409 * * 42 0 * * * * * * 2772 0 0 L 43 * * * * 3473 * * * * 136 * * * * * * * * * * 43 0 * * * * * * 2772 0 0 V 44 * * * * 2862 3409 * 3740 * * * * * * * * * 528 * * 44 0 * * * * * * 2772 0 0 L 45 * * * * 2862 * * * * 213 * * * * * * * * * * 45 0 * * * * * * 2772 0 0 T 46 815 * * * * * * * * * * * * * * 2110 3432 3219 * * 46 0 * * * * * * 2772 0 0 V 47 1048 * * * * * * * * * * * * * * * * 954 * * 47 0 * * * * * * 2772 0 0 Y 48 * * * * * * * * * * * 2862 * 2172 * * * * 3409 872 48 0 * * * * * * 2772 0 0 C 49 * 1764 * * * 2109 2862 * * * * 3219 * 2791 * * 3570 * * * 49 0 * * * * * * 2772 0 0 L 50 * * * * 2135 * * * * 589 * * * * * * * * 3219 * 50 0 * * * * * * 2772 0 0 H 51 * * * * * * 2421 * * * * * * * * * * * * 298 51 0 * * * * * * 2772 0 0 Q 52 * * * * * 2862 * * * * * * * 213 * * * * * * 52 0 * * * * * * 2772 0 0 R 53 * * * 2172 * * 2791 * * 2862 * * * 3473 1744 * * 3219 * * 53 0 * * * * * * 2772 0 0 Y 54 * * * * * * 3473 * * * * * * * * * * * * 136 54 0 * * * * * * 2772 0 0 L 55 * * * * * * * 2862 * 942 3219 * * * 2791 * * 3473 * * 55 0 * * * * * * 2772 0 0 N 56 * * * * * * 2791 * 2862 * * 1363 * * 2861 3570 3219 * * * 56 0 * * * * * * 2772 0 0 R 57 * * * 2235 * * * * 3570 * * * 3993 2308 2421 3219 * 2791 * * 57 0 * * * * * * 2772 0 0 T 58 2311 * * * * * * * * * * * 833 * * 2791 3432 * * * 58 0 * * * * * * 2772 0 0 M 59 * * 2976 * * * * 3350 3827 2125 1583 * * * * * * 2822 * * 59 0 * * * * * * 2849 0 0 P 60 * * * 2053 * 3827 * * * * * 2976 2104 * * 2822 2415 * * * 60 0 * * * * * * 2849 0 0 V 61 * * 1958 1495 * 2807 * * * * 4094 * * * * 3350 * 3503 * * 61 0 * * * * * * 2849 0 0 G 62 * * 2239 * * 1251 3350 2976 * * * 2807 * * * * * * * * 62 0 * * * * * * 2849 0 0 L 63 * * * * * * * 2473 * 2768 2420 * * * * 2976 1477 * * * 63 0 * * * * * * 2849 0 0 P 64 * * * * * * * 2976 * * * * 506 * * 2569 * * * * 64 0 * * * * * * 2849 0 0 G 65 * * * * * 3503 * 3533 1956 2239 * * * * 2976 3543 * 2807 * * 65 0 * * * * * * 2849 0 0 L 66 * 2807 * * 4094 * * 2210 * 1862 * * 2976 * * 3350 * 3607 * * 66 0 * * * * * * 2849 0 0 A 67 951 * * * * 3607 * 3306 * * 2807 * * * * 3350 * 4094 * * 67 0 * * * * * * 2849 0 0 A 68 2104 * * * 2415 * * * * 1630 * * * * * * * 2946 2976 * 68 0 * * * * * * 2849 0 0 A 69 1082 * * * * 2675 * * * 2807 * * * * * 3306 * 2976 * * 69 0 * * * * * * 2849 0 0 C 70 * 918 * * 2420 * * * * 3350 * * * * * 2429 * * * * 70 0 * * * * * * 2849 0 0 F 71 * * * * 87 * * * * 4094 * * * * * * * * * * 71 0 * * * * * * 2849 0 0 I 72 * * * * 888 * * 3503 * 1871 * * * * * * * 3350 * * 72 0 * * * * * * 2849 0 0 L 73 * * * * * * * 1442 * 1583 * * * * * * * 1745 * * 73 0 * * * * * * 2849 0 0 G 74 * * * * * 0 * * * * * * * * * * * * * * 74 0 * * * * * * 2849 0 0 V 75 2570 * * * * * * 2232 * 2114 4094 * * * * * * 1603 * * 75 0 * * * * * * 2849 0 0 L 76 * * * * 458 * * * * 1878 * * * * * * * * * * 76 0 * * * * * * 2849 0 0 L 77 * * * * * 735 * * * 3503 * * * * * 2976 3350 3543 * * 77 0 * * * * * * 2849 0 0 Y 78 * * * * * * 1495 * * * * * * * * * * * * 632 78 0 * * * * * * 2849 0 0 S 79 4094 * * * * * * * * * * 3306 * * * 430 3350 * * * 79 0 * * * * * * 2849 0 0 T 80 297 * * * * * * * * * * * * * * * 2425 * * * 80 0 * * * * * * 2849 0 0 V 81 * * * * 1345 * * 2792 * 1874 * * * * * * * 3503 * 3306 81 0 * * * * * * 2849 0 0 V 82 * * * * * * * 2257 * 2646 * * * * * * * 664 * * 82 0 * * * * * * 2849 0 0 R 83 * * * * * 2976 * * 1133 * * * * * 1262 * * * * * 83 0 * * * * * * 2849 0 0 A 84 1374 * * * * * * * * * 2439 * * * * * 2132 2311 * * 84 0 * * * * * * 2849 0 0 E 85 * * * 1878 * * * * * * * * * 674 * 3306 * * * * 85 0 * * * * * * 2849 0 0 Y 86 * * * * * * 4094 * * * * 3306 * * * * * 3533 * 408 86 0 * * * * * * 2849 0 0 P 87 * * * * * * * * * * * * 0 * * * * * * * 87 0 * * * * * * 2849 0 0 D 88 * * 1966 427 * * * * * * * * * * * * * * * * 88 0 * * * * * * 2849 0 0 I 89 2822 * * * * * * 2523 * 1138 3306 * * * * * * 2954 * * 89 0 * * * * * * 2849 0 0 G 90 * * * * * 0 * * * * * * * * * * * * * * 90 0 * * * * * * 2849 0 0 S 91 * * * * * 3533 * * * * * * * * * 130 * * * * 91 0 * * * * * * 2849 0 0 N 92 * * * * * * * * * * * 0 * * * * * * * * 92 0 * * * * * * 2849 0 0 F 93 * * * * 338 * * * * 2976 3607 * * * * * * * * * 93 0 * * * * * * 2849 0 0 F 94 * * * * 566 * * 4094 * 2473 * * * * * * * 3543 * * 94 0 * * * * * * 2849 0 0 P 95 3607 * * * * * * * * * * * 1597 * * 768 * * * * 95 107 3808 * 3000 193 * * 2849 1000 0 A 96 2196 * * * * * * 1745 * 2560 * * * * * 3306 * 2232 * * 96 0 * * * * * * 2849 0 0 V 97 * * * * 3607 * * 2037 * 2946 3350 * * * * * 2429 1939 * * 97 0 * * * * * * 2849 0 0 L 98 * 3306 * * 3543 * * 3607 * 1378 3805 * * * * * * 1864 * * 98 0 * * * * * * 2849 0 0 S 99 2946 * * * * * * 2646 * * 2668 * * * * 2647 1759 3350 * * 99 0 * * * * * * 2849 0 0 V 100 * * * * * * * 3808 * 976 3533 * * * * * * 1583 * * 100 0 * * * * * * 2849 0 0 I 101 2946 * * * * 2473 * 1118 3808 3805 * * * * * * * 3533 * * 101 0 * * * * * * 2849 0 0 M 102 * * * * * * * 2646 * 586 3503 * * * * * * 3543 * * 102 0 * * * * * * 2849 0 0 V 103 2023 * * * * 3808 * * * 1819 * * * * * 3350 2976 2523 * * 103 0 * * * * * * 2849 0 0 F 104 3805 * * * 1941 * * 2333 * 1428 * * * * * * * 3350 * * 104 0 * * * * * * 2849 0 0 W 105 * * * * * * * * * * * * * * * 3808 * 3805 223 * 105 0 * * * * * * 2849 0 0 I 106 * * * * * * * 1304 * 2332 4094 * * * * * * 1565 * * 106 0 * * * * * * 2849 0 0 G 107 1908 * * * * 1414 * 2976 * * * * * * * 3805 * * * 2646 107 0 * * * * * * 2849 0 0 A 108 3503 * * * 3533 * * 2816 1991 3543 * * * * 3306 * 4094 4075 * 2976 108 0 * * * * * * 2849 0 0 K 109 * * * * * * * * 607 * * * * 3306 3543 4094 3350 * * * 109 0 * * * * * * 2849 0 0 M 110 * * * 3808 * * * 3306 * 1448 2096 * * * * * * 2569 4094 * 110 0 * * * * * * 2849 0 0 R 111 * * * * * 891 * * 1468 * * * * * 3331 * * * * * 111 563 1630 * 1734 516 * * 2668 1780 0 N 112 3859 * 3020 3471 * 2301 * 3576 * * * 3232 * 3018 3226 * * 3412 * * 112 0 * * * * * * 2601 0 0 R 113 * * * * * * * * 2167 2523 * * * * 729 * * * * * 113 0 * * * * * * 2892 0 0 K 114 * * * * * * * * 0 * * * * * * * * * * * 114 0 * * * * * * 2794 0 0 Q 115 2692 * * 2050 * * * * 2402 * * * * 2873 1847 * * * * * 115 0 * * * * * * 2794 0 0 E 116 * * * 1460 * * * * 1177 * * * * 2365 * * * * * * 116 0 * * * * * * 2222 0 0 V 117 1654 * * 1570 * * * * * * * * * * * * * 1533 * * 117 0 * * * * * * 1806 0 0 A 118 0 * * * * * * * * * * * * * * * * * * * 118 0 * * * * * * 1806 0 0 E 119 * * * 0 * * * * * * * * * * * * * * * * 119 0 * * 0 * * * 1000 0 0 //