BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (119 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AF42 Inner membrane protein yijD n=157 Tax=Enterobact... 242 3e-63 UniRef50_D2TCM7 Inner membrane protein yijD n=3 Tax=Erwinia RepI... 138 5e-32 UniRef50_B4F1H3 Putative membrane protein n=3 Tax=Proteus RepID=... 109 3e-23 UniRef50_D0I395 ATPase of the AAA+ class n=1 Tax=Grimontia holli... 104 7e-22 UniRef50_B5FCA7 Acetyl-coenzyme A synthetase n=39 Tax=Vibrionale... 94 1e-18 UniRef50_B6ENT5 Inner membrane protein n=6 Tax=Vibrionaceae RepI... 87 1e-16 UniRef50_B8KEB4 ATPase of the AAA+ class n=10 Tax=Vibrio RepID=B... 83 3e-15 UniRef50_A6FGY0 Putative uncharacterized protein n=1 Tax=Moritel... 81 1e-14 UniRef50_A0KF75 ATPase of the AAA+ class n=2 Tax=Aeromonas RepID... 69 3e-11 UniRef50_D1P7M9 Inner membrane protein YijD n=4 Tax=Providencia ... 55 5e-07 UniRef50_A1SR76 Putative uncharacterized protein n=2 Tax=Psychro... 51 1e-05 >UniRef50_P0AF42 Inner membrane protein yijD n=157 Tax=Enterobacteriaceae RepID=YIJD_ECO57 Length = 119 Score = 242 bits (617), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 119/119 (100%), Positives = 119/119 (100%) Query: 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP Sbjct: 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60 Query: 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE Sbjct: 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119 >UniRef50_D2TCM7 Inner membrane protein yijD n=3 Tax=Erwinia RepID=D2TCM7_ERWPY Length = 117 Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 70/111 (63%), Positives = 90/111 (81%) Query: 5 NQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLP 64 +D+GTLLL + GL+ING+FAALFSS+VPFS+FP+I L L+ + LHQRYLNR MP G+P Sbjct: 6 GRDKGTLLLTFLTGLAINGSFAALFSSVVPFSIFPLIVLGLSAWGLHQRYLNRAMPDGMP 65 Query: 65 GLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQ 115 LAAA F+LG+L+YS +VRAEYPDIGSNF P + VI+VFWIG +++ R Sbjct: 66 SLAAAFFLLGILVYSAIVRAEYPDIGSNFVPVIFMVIVVFWIGLRLKRRSS 116 >UniRef50_B4F1H3 Putative membrane protein n=3 Tax=Proteus RepID=B4F1H3_PROMH Length = 133 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 84/116 (72%), Gaps = 1/116 (0%) Query: 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIV-PFSVFPIISLVLTVYCLHQRYLNRTM 59 M+Q ++ TLLL++V G++++G+++ LF+ + P+S+FP+ISLVL VYCL+QRYLN+ M Sbjct: 1 MEQNRCEKSTLLLSVVIGVALHGSYSTLFNPLTGPWSIFPLISLVLAVYCLYQRYLNQPM 60 Query: 60 PVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQ 115 G+P L + F+LG+ Y+ ++ P++GSNFF +V VI+ WI +++ RK+ Sbjct: 61 TDGMPKLIFSFFLLGLFGYNAYLKTSNPEMGSNFFSSVCIVIIALWIYRQIKQRKR 116 >UniRef50_D0I395 ATPase of the AAA+ class n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I395_VIBHO Length = 127 Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 80/124 (64%), Gaps = 6/124 (4%) Query: 1 MKQANQ-DRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTM 59 M+Q +Q +R LLLA+VAGL + + A LF V FS FPII+ VL VYC +Q+++N+ + Sbjct: 1 MEQNHQSERKFLLLAVVAGLCGSASLATLFVDSVAFSAFPIIAFVLAVYCFYQQHVNQPL 60 Query: 60 PVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKM-----RNRK 114 G P +A ACF++G YS VR + P++G NFF ++++++ FW+ KM +K Sbjct: 61 TEGTPIIAFACFLVGAFGYSAFVRMQVPELGGNFFSIIVTMVLAFWVAFKMGWLGNSGKK 120 Query: 115 QEVA 118 +E A Sbjct: 121 EEAA 124 >UniRef50_B5FCA7 Acetyl-coenzyme A synthetase n=39 Tax=Vibrionales RepID=B5FCA7_VIBFM Length = 124 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 74/115 (64%) Query: 2 KQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPV 61 + + +R TL L++VAGL +N + L + V FS+FPII+LVL L+Q YL + Sbjct: 4 ENSRNERKTLALSVVAGLCLNAVWVGLTVTEVAFSIFPIIALVLAAQGLYQEYLRPPVSE 63 Query: 62 GLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQE 116 P +A ACF +G+ +S +V+A+YP+ GSNFF ++++ ++ WIG KM K++ Sbjct: 64 DTPLIAVACFFVGLFGHSALVKAQYPEAGSNFFSILVALALLLWIGVKMGILKKK 118 >UniRef50_B6ENT5 Inner membrane protein n=6 Tax=Vibrionaceae RepID=B6ENT5_ALISL Length = 124 Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 72/117 (61%) Query: 2 KQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPV 61 + + +R TL L++V GL +N + + V FS+FPII+L+L L+Q YL Sbjct: 4 ENSRNERKTLALSVVTGLCLNAVWVGFTVTEVTFSIFPIIALILAAQGLYQEYLREPKGD 63 Query: 62 GLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVA 118 +A ACF +G+ +S +V+A+YP++GSNFF ++++ ++ WIG K+ K++ A Sbjct: 64 DTSLIAVACFFVGLFGHSALVKAQYPEVGSNFFSILVALALLLWIGIKVGVLKKKEA 120 >UniRef50_B8KEB4 ATPase of the AAA+ class n=10 Tax=Vibrio RepID=B8KEB4_VIBPA Length = 128 Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 66/104 (63%) Query: 7 DRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGL 66 ++ TL+LALVAG+ + + L S V FS+FP+I+LVL V L+Q YL++ + +P + Sbjct: 13 EKKTLVLALVAGMCGDAMLSWLTMSQVSFSIFPLIALVLAVQTLYQEYLSKPVSEDIPLV 72 Query: 67 AAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKM 110 ACF +G +S ++A+YPD GSN +++ ++ W+ K+ Sbjct: 73 GLACFFVGAFGHSAFIKAQYPDAGSNMLAIFITLGLLLWVAKKL 116 >UniRef50_A6FGY0 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FGY0_9GAMM Length = 120 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 1 MKQANQ-DRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTM 59 M NQ L + +AGL N TFA L +S V FS+FP+I+LVL Y +Q Y+ + Sbjct: 1 MTTKNQAGYKPLYFSFLAGLCGNATFATLTTSEVAFSIFPLIALVLVAYNWYQVYMTSAI 60 Query: 60 PVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMR--NRKQE 116 + + F++GVL Y+T VR EYP++GSNF P +L + + W+ + +RK + Sbjct: 61 ESHISKSSLGLFVIGVLTYTTFVRMEYPELGSNFLPLMLVLGLSVWVAKTVGVFDRKAQ 119 >UniRef50_A0KF75 ATPase of the AAA+ class n=2 Tax=Aeromonas RepID=A0KF75_AERHH Length = 125 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 8/103 (7%) Query: 18 GLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLL 77 G+ + + L S+VPFS FP+I+LVL Y L+Q Y + ++ P CF +GV Sbjct: 23 GICGDASLTVLSESVVPFSFFPMIALVLAAYQLYQHYRHVSLEGNTPVCMLLCFFIGVFG 82 Query: 78 YSTVVRAEYPDIGSNFFP--------AVLSVIMVFWIGAKMRN 112 +S +V+ +YP++GSNFF AVLS+ + +G K + Sbjct: 83 HSALVKVQYPELGSNFFSLIMMLLLLAVLSIKLGISVGKKEKE 125 >UniRef50_D1P7M9 Inner membrane protein YijD n=4 Tax=Providencia RepID=D1P7M9_9ENTR Length = 70 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%) Query: 59 MPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQ 115 MP+GLP A LG+ Y+ ++R ++P++GSNF PA + VI+ W+ + RK+ Sbjct: 1 MPMGLPKFVAGSLFLGMFGYAAILRVQHPEVGSNFIPATVIVIIALWMYTSWKARKR 57 >UniRef50_A1SR76 Putative uncharacterized protein n=2 Tax=Psychromonas RepID=A1SR76_PSYIN Length = 138 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 52/110 (47%) Query: 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60 M Q L+ + GLS++ ++ L VPFS F ++L +V + Y+ Sbjct: 20 MNQPIISLKWLVYTYIIGLSLSACYSMLTKEPVPFSFFAFLTLFFSVNHFYGLYIKEPDN 79 Query: 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKM 110 A F +G+ YS + +YP++GSN F L++I+ W+ K+ Sbjct: 80 EISIRPAWVSFFIGIFSYSAFIGTQYPELGSNLFSVTLTLILTIWLIYKL 129 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AF42 Inner membrane protein yijD n=157 Tax=Enterobact... 151 6e-36 UniRef50_B5FCA7 Acetyl-coenzyme A synthetase n=39 Tax=Vibrionale... 150 9e-36 UniRef50_B4F1H3 Putative membrane protein n=3 Tax=Proteus RepID=... 150 2e-35 UniRef50_B6ENT5 Inner membrane protein n=6 Tax=Vibrionaceae RepI... 149 3e-35 UniRef50_D0I395 ATPase of the AAA+ class n=1 Tax=Grimontia holli... 139 3e-32 UniRef50_B8KEB4 ATPase of the AAA+ class n=10 Tax=Vibrio RepID=B... 134 7e-31 UniRef50_A6FGY0 Putative uncharacterized protein n=1 Tax=Moritel... 121 4e-27 UniRef50_A1SR76 Putative uncharacterized protein n=2 Tax=Psychro... 121 8e-27 UniRef50_A0KF75 ATPase of the AAA+ class n=2 Tax=Aeromonas RepID... 118 4e-26 UniRef50_D2TCM7 Inner membrane protein yijD n=3 Tax=Erwinia RepI... 116 2e-25 UniRef50_D1P7M9 Inner membrane protein YijD n=4 Tax=Providencia ... 73 2e-12 Sequences not found previously or not previously below threshold: UniRef50_A9AYQ1 Putative uncharacterized protein n=1 Tax=Herpeto... 39 0.039 CONVERGED! >UniRef50_P0AF42 Inner membrane protein yijD n=157 Tax=Enterobacteriaceae RepID=YIJD_ECO57 Length = 119 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 119/119 (100%), Positives = 119/119 (100%) Query: 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP Sbjct: 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60 Query: 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE Sbjct: 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119 >UniRef50_B5FCA7 Acetyl-coenzyme A synthetase n=39 Tax=Vibrionales RepID=B5FCA7_VIBFM Length = 124 Score = 150 bits (380), Expect = 9e-36, Method: Composition-based stats. Identities = 46/115 (40%), Positives = 74/115 (64%) Query: 2 KQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPV 61 + + +R TL L++VAGL +N + L + V FS+FPII+LVL L+Q YL + Sbjct: 4 ENSRNERKTLALSVVAGLCLNAVWVGLTVTEVAFSIFPIIALVLAAQGLYQEYLRPPVSE 63 Query: 62 GLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQE 116 P +A ACF +G+ +S +V+A+YP+ GSNFF ++++ ++ WIG KM K++ Sbjct: 64 DTPLIAVACFFVGLFGHSALVKAQYPEAGSNFFSILVALALLLWIGVKMGILKKK 118 >UniRef50_B4F1H3 Putative membrane protein n=3 Tax=Proteus RepID=B4F1H3_PROMH Length = 133 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 50/116 (43%), Positives = 84/116 (72%), Gaps = 1/116 (0%) Query: 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIV-PFSVFPIISLVLTVYCLHQRYLNRTM 59 M+Q ++ TLLL++V G++++G+++ LF+ + P+S+FP+ISLVL VYCL+QRYLN+ M Sbjct: 1 MEQNRCEKSTLLLSVVIGVALHGSYSTLFNPLTGPWSIFPLISLVLAVYCLYQRYLNQPM 60 Query: 60 PVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQ 115 G+P L + F+LG+ Y+ ++ P++GSNFF +V VI+ WI +++ RK+ Sbjct: 61 TDGMPKLIFSFFLLGLFGYNAYLKTSNPEMGSNFFSSVCIVIIALWIYRQIKQRKR 116 >UniRef50_B6ENT5 Inner membrane protein n=6 Tax=Vibrionaceae RepID=B6ENT5_ALISL Length = 124 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 72/117 (61%) Query: 2 KQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPV 61 + + +R TL L++V GL +N + + V FS+FPII+L+L L+Q YL Sbjct: 4 ENSRNERKTLALSVVTGLCLNAVWVGFTVTEVTFSIFPIIALILAAQGLYQEYLREPKGD 63 Query: 62 GLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVA 118 +A ACF +G+ +S +V+A+YP++GSNFF ++++ ++ WIG K+ K++ A Sbjct: 64 DTSLIAVACFFVGLFGHSALVKAQYPEVGSNFFSILVALALLLWIGIKVGVLKKKEA 120 >UniRef50_D0I395 ATPase of the AAA+ class n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I395_VIBHO Length = 127 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 52/124 (41%), Positives = 80/124 (64%), Gaps = 6/124 (4%) Query: 1 MKQANQ-DRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTM 59 M+Q +Q +R LLLA+VAGL + + A LF V FS FPII+ VL VYC +Q+++N+ + Sbjct: 1 MEQNHQSERKFLLLAVVAGLCGSASLATLFVDSVAFSAFPIIAFVLAVYCFYQQHVNQPL 60 Query: 60 PVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMR-----NRK 114 G P +A ACF++G YS VR + P++G NFF ++++++ FW+ KM +K Sbjct: 61 TEGTPIIAFACFLVGAFGYSAFVRMQVPELGGNFFSIIVTMVLAFWVAFKMGWLGNSGKK 120 Query: 115 QEVA 118 +E A Sbjct: 121 EEAA 124 >UniRef50_B8KEB4 ATPase of the AAA+ class n=10 Tax=Vibrio RepID=B8KEB4_VIBPA Length = 128 Score = 134 bits (338), Expect = 7e-31, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 66/109 (60%) Query: 3 QANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVG 62 ++ TL+LALVAG+ + + L S V FS+FP+I+LVL V L+Q YL++ + Sbjct: 9 NRGSEKKTLVLALVAGMCGDAMLSWLTMSQVSFSIFPLIALVLAVQTLYQEYLSKPVSED 68 Query: 63 LPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMR 111 +P + ACF +G +S ++A+YPD GSN +++ ++ W+ K+ Sbjct: 69 IPLVGLACFFVGAFGHSAFIKAQYPDAGSNMLAIFITLGLLLWVAKKLG 117 >UniRef50_A6FGY0 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FGY0_9GAMM Length = 120 Score = 121 bits (305), Expect = 4e-27, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 64/116 (55%) Query: 2 KQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPV 61 + L + +AGL N TFA L +S V FS+FP+I+LVL Y +Q Y+ + Sbjct: 3 TKNQAGYKPLYFSFLAGLCGNATFATLTTSEVAFSIFPLIALVLVAYNWYQVYMTSAIES 62 Query: 62 GLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEV 117 + + F++GVL Y+T VR EYP++GSNF P +L + + W+ + ++ Sbjct: 63 HISKSSLGLFVIGVLTYTTFVRMEYPELGSNFLPLMLVLGLSVWVAKTVGVFDRKA 118 >UniRef50_A1SR76 Putative uncharacterized protein n=2 Tax=Psychromonas RepID=A1SR76_PSYIN Length = 138 Score = 121 bits (303), Expect = 8e-27, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 52/110 (47%) Query: 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60 M Q L+ + GLS++ ++ L VPFS F ++L +V + Y+ Sbjct: 20 MNQPIISLKWLVYTYIIGLSLSACYSMLTKEPVPFSFFAFLTLFFSVNHFYGLYIKEPDN 79 Query: 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKM 110 A F +G+ YS + +YP++GSN F L++I+ W+ K+ Sbjct: 80 EISIRPAWVSFFIGIFSYSAFIGTQYPELGSNLFSVTLTLILTIWLIYKL 129 >UniRef50_A0KF75 ATPase of the AAA+ class n=2 Tax=Aeromonas RepID=A0KF75_AERHH Length = 125 Score = 118 bits (297), Expect = 4e-26, Method: Composition-based stats. Identities = 38/110 (34%), Positives = 65/110 (59%) Query: 2 KQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPV 61 Q + LLLAL+ G+ + + L S+VPFS FP+I+LVL Y L+Q Y + ++ Sbjct: 7 DQNPIPKKPLLLALLIGICGDASLTVLSESVVPFSFFPMIALVLAAYQLYQHYRHVSLEG 66 Query: 62 GLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMR 111 P CF +GV +S +V+ +YP++GSNFF ++ ++++ + K+ Sbjct: 67 NTPVCMLLCFFIGVFGHSALVKVQYPELGSNFFSLIMMLLLLAVLSIKLG 116 >UniRef50_D2TCM7 Inner membrane protein yijD n=3 Tax=Erwinia RepID=D2TCM7_ERWPY Length = 117 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 70/111 (63%), Positives = 90/111 (81%) Query: 5 NQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLP 64 +D+GTLLL + GL+ING+FAALFSS+VPFS+FP+I L L+ + LHQRYLNR MP G+P Sbjct: 6 GRDKGTLLLTFLTGLAINGSFAALFSSVVPFSIFPLIVLGLSAWGLHQRYLNRAMPDGMP 65 Query: 65 GLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQ 115 LAAA F+LG+L+YS +VRAEYPDIGSNF P + VI+VFWIG +++ R Sbjct: 66 SLAAAFFLLGILVYSAIVRAEYPDIGSNFVPVIFMVIVVFWIGLRLKRRSS 116 >UniRef50_D1P7M9 Inner membrane protein YijD n=4 Tax=Providencia RepID=D1P7M9_9ENTR Length = 70 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 36/57 (63%) Query: 59 MPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQ 115 MP+GLP A LG+ Y+ ++R ++P++GSNF PA + VI+ W+ + RK+ Sbjct: 1 MPMGLPKFVAGSLFLGMFGYAAILRVQHPEVGSNFIPATVIVIIALWMYTSWKARKR 57 >UniRef50_A9AYQ1 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYQ1_HERA2 Length = 444 Score = 39.2 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 22 NGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTV 81 + T + L + V FS+ +++LVL R + M F +G +YS + Sbjct: 64 SVTSSMLTVTTVTFSII-MVALVLASQQFSPRIIRNVMRDTPSQYVLGTF-IGTFIYSLL 121 Query: 82 VRAEYPDIGSNFFPAVLSVIMVF 104 V + D S F +LS+ Sbjct: 122 VLGQINDQASFVFVPILSLATSI 144 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.322 0.146 0.400 Lambda K H 0.267 0.0441 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 445,106,816 Number of Sequences: 3077464 Number of extensions: 16792129 Number of successful extensions: 71502 Number of sequences better than 1.0e-01: 16 Number of HSP's better than 0.1 without gapping: 23 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 71472 Number of HSP's gapped (non-prelim): 28 length of query: 119 length of database: 1,040,396,356 effective HSP length: 86 effective length of query: 33 effective length of database: 775,734,452 effective search space: 25599236916 effective search space used: 25599236916 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 87 (38.0 bits)