BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (406 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 828 0.0 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 460 e-128 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 358 2e-97 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 342 1e-92 UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 309 1e-82 UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea b... 244 5e-63 UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK... 241 4e-62 UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH 236 1e-60 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 219 1e-55 UniRef50_B2Q2V0 Putative uncharacterized protein n=1 Tax=Provide... 217 6e-55 UniRef50_C0B3V0 Putative uncharacterized protein n=1 Tax=Proteus... 211 3e-53 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 206 1e-51 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 201 4e-50 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 197 8e-49 UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 196 2e-48 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 193 1e-47 UniRef50_D1NYQ4 Protein mlc n=3 Tax=Providencia RepID=D1NYQ4_9ENTR 191 6e-47 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 189 2e-46 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 185 3e-45 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 182 1e-44 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 182 2e-44 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 182 3e-44 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 176 2e-42 UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 175 3e-42 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 175 3e-42 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 174 4e-42 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 174 7e-42 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 170 1e-40 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 168 3e-40 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 167 6e-40 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 166 2e-39 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 164 7e-39 UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=M... 163 1e-38 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 163 1e-38 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 161 4e-38 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 160 9e-38 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 160 1e-37 UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 159 1e-37 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 159 2e-37 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 159 2e-37 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 159 2e-37 UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus ... 157 7e-37 UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU 157 9e-37 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 157 9e-37 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 157 9e-37 UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR... 156 1e-36 UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acid... 156 1e-36 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 155 3e-36 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 154 7e-36 UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium ... 153 1e-35 UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n... 152 2e-35 UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostri... 152 2e-35 UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n... 152 3e-35 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 151 4e-35 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 151 5e-35 UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID... 150 6e-35 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 150 7e-35 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 150 7e-35 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 150 7e-35 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 150 9e-35 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 150 1e-34 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 149 2e-34 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 149 3e-34 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 148 3e-34 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 147 5e-34 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 147 5e-34 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 147 5e-34 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 146 1e-33 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 146 1e-33 UniRef50_C6JJM8 Transcription regulator n=2 Tax=Fusobacterium Re... 146 2e-33 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 145 3e-33 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 145 3e-33 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 144 5e-33 UniRef50_Q9K992 Transcriptional repressor of the xylose operon n... 144 5e-33 UniRef50_UPI00016C4534 transcriptional repressor n=1 Tax=Gemmata... 144 6e-33 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 144 7e-33 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 144 8e-33 UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D... 143 1e-32 UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminoc... 143 1e-32 UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipart... 143 1e-32 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 143 1e-32 UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiph... 142 2e-32 UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix oreni... 142 2e-32 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 142 2e-32 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 142 2e-32 UniRef50_C2KRE7 Possible N-acetylglucosamine repressor n=1 Tax=M... 141 3e-32 UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepI... 141 4e-32 UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus monil... 141 4e-32 UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM... 140 7e-32 UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bif... 140 8e-32 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 139 2e-31 UniRef50_D1NUM3 Transcriptional repressor in the Rok family prot... 139 2e-31 UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=C... 139 2e-31 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 138 4e-31 UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostri... 137 6e-31 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 137 6e-31 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 137 7e-31 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 137 8e-31 UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsul... 137 1e-30 UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifi... 136 1e-30 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 135 2e-30 UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepI... 135 3e-30 UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillu... 135 3e-30 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 135 3e-30 UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp... 135 3e-30 UniRef50_C7IE75 ROK family protein n=1 Tax=Clostridium papyrosol... 134 4e-30 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 134 8e-30 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 134 8e-30 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 133 1e-29 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 133 1e-29 UniRef50_D2BD51 Transcriptional repressor of the xylose operon n... 133 1e-29 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 132 2e-29 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 132 2e-29 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 132 2e-29 UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitan... 132 3e-29 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 131 4e-29 UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobact... 131 4e-29 UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterale... 131 4e-29 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 131 4e-29 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 131 6e-29 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 131 6e-29 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 130 6e-29 UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida f... 130 7e-29 UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=... 130 8e-29 UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophil... 130 1e-28 UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostri... 129 1e-28 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 129 2e-28 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 129 2e-28 UniRef50_C7Q3N2 ROK family protein n=1 Tax=Catenulispora acidiph... 129 2e-28 UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (N... 129 2e-28 UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n... 129 2e-28 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 129 2e-28 UniRef50_D2R4U5 ROK family protein n=1 Tax=Pirellula staleyi DSM... 129 3e-28 UniRef50_C1IAS4 Xylose repressor n=1 Tax=Clostridium sp. 7_2_43F... 128 3e-28 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 127 5e-28 UniRef50_A6DFD9 Probable transcription repressor n=1 Tax=Lentisp... 127 6e-28 UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=... 126 2e-27 UniRef50_A4FHJ7 Xylose operon repressor n=4 Tax=Actinobacteria (... 125 2e-27 UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c Rep... 125 2e-27 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 125 3e-27 UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=... 125 3e-27 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 125 3e-27 UniRef50_B5GKQ2 ROK family transcriptional regulator (Fragment) ... 125 3e-27 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 125 3e-27 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 125 4e-27 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 125 4e-27 UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae... 125 4e-27 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 124 5e-27 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 124 5e-27 UniRef50_B0MYS3 Putative uncharacterized protein n=1 Tax=Alistip... 124 5e-27 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 124 6e-27 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 124 8e-27 UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=... 124 8e-27 UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID... 123 1e-26 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 123 1e-26 UniRef50_C7MQ22 Transcriptional regulator/sugar kinase n=1 Tax=S... 123 1e-26 UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp.... 123 1e-26 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 123 1e-26 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 123 2e-26 UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminoc... 122 2e-26 UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar... 122 2e-26 UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiph... 122 2e-26 UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus Rep... 122 2e-26 UniRef50_C2BRU2 Transcriptional regulator n=3 Tax=Mobiluncus Rep... 122 3e-26 UniRef50_B8E378 ROK family protein n=1 Tax=Dictyoglomus turgidum... 122 3e-26 UniRef50_B2J5U6 ROK family protein n=5 Tax=Cyanobacteria RepID=B... 122 3e-26 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 122 3e-26 UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp.... 122 4e-26 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 121 4e-26 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 121 5e-26 UniRef50_D1AW58 ROK family protein n=7 Tax=Fusobacteriaceae RepI... 121 5e-26 UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O... 121 5e-26 UniRef50_B9YHG7 ROK family protein n=2 Tax=Nostocaceae RepID=B9Y... 121 6e-26 UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metallir... 120 6e-26 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 120 6e-26 UniRef50_A4XCV6 ROK family protein n=2 Tax=Salinispora RepID=A4X... 120 7e-26 UniRef50_D2B9Z8 Transcriptional regulator, ROK family n=1 Tax=St... 120 7e-26 UniRef50_D2PPN2 ROK family protein n=1 Tax=Kribbella flavida DSM... 120 8e-26 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 120 9e-26 UniRef50_D1AFT6 ROK family protein n=1 Tax=Sebaldella termitidis... 120 1e-25 UniRef50_D1ANS5 ROK family protein n=2 Tax=Fusobacteriaceae RepI... 120 1e-25 UniRef50_A9B0V9 ROK family protein n=1 Tax=Herpetosiphon auranti... 120 1e-25 UniRef50_C0ZA86 Putative glucokinase n=1 Tax=Brevibacillus brevi... 120 1e-25 UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum D... 119 1e-25 UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agroba... 119 1e-25 UniRef50_C8QA05 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 119 2e-25 UniRef50_Q0SHP3 Glucokinase n=22 Tax=Actinomycetales RepID=Q0SHP... 119 2e-25 UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM ... 119 2e-25 UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavid... 119 2e-25 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 119 2e-25 UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia... 119 2e-25 UniRef50_B4D7W0 ROK family protein n=1 Tax=Chthoniobacter flavus... 119 3e-25 UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulol... 119 3e-25 UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetal... 118 3e-25 UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Re... 118 3e-25 UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella for... 118 4e-25 UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacteriu... 118 4e-25 UniRef50_B3YF83 Putative ROK family protein n=2 Tax=Salmonella e... 118 4e-25 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 118 4e-25 UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulol... 118 5e-25 UniRef50_C3RN66 ROK family protein (Fragment) n=2 Tax=Bacteria R... 118 5e-25 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 117 6e-25 UniRef50_A6CEE9 Transcriptional repressor of the xylose operon n... 117 6e-25 UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenen... 117 6e-25 UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G39... 117 6e-25 UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 117 7e-25 UniRef50_A5UW86 Glucokinase n=2 Tax=Roseiflexus RepID=A5UW86_ROSS1 117 8e-25 UniRef50_B2GIX7 Putative NagC family transcriptional regulator n... 117 9e-25 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 117 9e-25 UniRef50_C5ESA4 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_... 117 1e-24 UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenu... 116 1e-24 UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X... 116 1e-24 UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium ros... 116 1e-24 UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N... 116 2e-24 UniRef50_D1BZ00 ROK family protein n=1 Tax=Xylanimonas cellulosi... 116 2e-24 UniRef50_C1CMC6 ROK family protein, putative n=18 Tax=Streptococ... 116 2e-24 UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostri... 116 2e-24 UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=M... 115 2e-24 UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=... 115 3e-24 UniRef50_A4FI29 Crp-family transcriptional regulator n=4 Tax=Act... 115 3e-24 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 115 3e-24 UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytoferm... 115 4e-24 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 115 4e-24 UniRef50_C5C4B6 ROK family protein n=1 Tax=Beutenbergia cavernae... 114 5e-24 UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS61... 114 5e-24 UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostrid... 114 5e-24 UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae A... 114 6e-24 UniRef50_C7IBW3 ROK family protein n=1 Tax=Clostridium papyrosol... 114 6e-24 UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A... 114 7e-24 UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacteriu... 114 7e-24 UniRef50_B5JLF7 ROK family protein n=1 Tax=Verrucomicrobiae bact... 114 7e-24 UniRef50_B9XME9 ROK family protein n=1 Tax=bacterium Ellin514 Re... 114 8e-24 UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5... 114 9e-24 UniRef50_Q023J0 Glucokinase n=1 Tax=Candidatus Solibacter usitat... 113 1e-23 UniRef50_C2BT73 Transcriptional repressor n=1 Tax=Mobiluncus cur... 113 1e-23 UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=S... 113 1e-23 UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=S... 113 1e-23 UniRef50_UPI00017890E0 ROK family protein n=1 Tax=Geobacillus sp... 113 1e-23 UniRef50_C3JBE1 Glucokinase n=16 Tax=Bacteria RepID=C3JBE1_9PORP 113 1e-23 UniRef50_C3WAJ9 Glucokinase n=1 Tax=Fusobacterium mortiferum ATC... 113 2e-23 UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobact... 112 2e-23 UniRef50_C1A104 Glucokinase n=9 Tax=Actinomycetales RepID=C1A104... 112 2e-23 UniRef50_Q7NF96 Sugar kinase n=1 Tax=Gloeobacter violaceus RepID... 112 2e-23 UniRef50_C8QHM3 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 112 2e-23 UniRef50_C8SG46 ROK family protein n=1 Tax=Mesorhizobium opportu... 112 2e-23 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 112 3e-23 UniRef50_C0W6S3 Xylose operon repressor n=1 Tax=Actinomyces urog... 112 3e-23 UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobac... 112 3e-23 UniRef50_C6JE45 ROK family protein n=3 Tax=Clostridiales RepID=C... 112 3e-23 UniRef50_C1XFK4 Transcriptional regulator/sugar kinase n=1 Tax=M... 112 3e-23 >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/406 (100%), Positives = 406/406 (100%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG Sbjct: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER Sbjct: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE Sbjct: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG Sbjct: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI Sbjct: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN Sbjct: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN Sbjct: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/405 (56%), Positives = 292/405 (72%), Gaps = 3/405 (0%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MT G QI NVDL+KQ+NSAAVYRLID GPISR++IAE SQLAPASVTKITRQLIE G Sbjct: 22 MTGG---QIANVDLIKQVNSAAVYRLIDLQGPISRVKIAELSQLAPASVTKITRQLIEHG 78 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 LIKE QASTGGRRAIS+ T F + +LGR + L+DL K L + + E Sbjct: 79 LIKETSPQASTGGRRAISLTTIKHRFQFVSAKLGRGYLQLALYDLDGKELDQHITQVTEI 138 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 QQ + LL I FIDS Q + R LI+I++ +PGLV+P+SG + Y P Q+ N L + Sbjct: 139 EQQPVVDMLLREIGAFIDSQQDRSRNLISIALTMPGLVNPESGMVIYTPKYQIRNLALAK 198 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 LE F + C+VG+D RSLALAEH+FG S+DC DSILV VH+G G+GII+ G++F+G+N Sbjct: 199 LLENHFNLPCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLGQNR 258 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 NVGEIGHIQVEPLG+RCHCGNFGCLETIA+N AI +V L+ +G+ S + TI+ + Sbjct: 259 NVGEIGHIQVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSSLQEKHITIQEV 318 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 CKAA GD LA VIE VG HLG+ +AI +NLFNPQK++IAGEIT A+++L PAI C+ Sbjct: 319 CKAAMAGDELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIRRCVE 378 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 Q+L +F LP+V++ ++ +G FALVKRA+L G LLQ ++E Sbjct: 379 HQSLPSFHRGLPIVKARFQNQPTVGGFALVKRALLEGDLLQIIME 423 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 358 bits (919), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 176/395 (44%), Positives = 263/395 (66%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I +VD +KQLNSA +Y++I++Y PISR++IA S+LAPASVTKITRQL+++G+I E +Q Sbjct: 12 IASVDHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLLQQGIICETARQ 71 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 ASTGGR AIS+ T N H + +++G+ +++ ++L+++ L + + +Q L Sbjct: 72 ASTGGRCAISLAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQLTTKKIKIKSEDEQQLLAF 131 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L++ I FI Q+ + ++ AI++ L GL++P G + Y P+ + N+ L +E+ F++ Sbjct: 132 LISEIDNFIKKQQKNMGKISAIAISLSGLINPKKGVVLYSPYHPLVNFPLANKIEQHFQL 191 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+G+ RSLALAEHYFGAS++C DSIL+ +H G G+GII G+ +G+N N+GEIGHI Sbjct: 192 PTFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIEGKALLGQNFNIGEIGHI 251 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 Q P G +CHCGNFGCLET ++ I ++V +KQG +R+ LD I+ I +AA D Sbjct: 252 QANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIKQGSFTRLSLDSLNIEKIYQAAEDND 311 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 L +++E +LGK IAI INL NPQKI+IAG+I A LL IE CI Q L F+ Sbjct: 312 PLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTSLLSTIEQCIAHQVLPNFQ 371 Query: 369 TNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHL 403 + + S L+ + + AFAL+K+A+ G LLQ + Sbjct: 372 HKVQIETSLLEPDTTLAAFALIKQAIYEGDLLQQI 406 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 342 bits (878), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 176/401 (43%), Positives = 265/401 (66%), Gaps = 2/401 (0%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 AQ G++D +KQ+N+ VY+LID GPISRI ++++S+LAPAS+TKITR+LIE L+ E Sbjct: 34 AQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKITRELIEAHLVHETT 93 Query: 67 -QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 Q+A + GR A+ + + + +RLGR TI L +L +VL + + ER Q + Sbjct: 94 VQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQDDV 153 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 LL+ I +F +Y +L + +I++ LPGLV+ + G + MPH VEN L + + Sbjct: 154 LARLLHEIEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVENLALGPEIYKA 213 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + F+ +D R+ ALAE FG SQ E+S+L+ +H G GAGII +GR+ GR+GN+GE+ Sbjct: 214 TGLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGNIGEL 273 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIKTICKAA 304 GHIQ++P G+ CHCGN GCLET+A++ AI + V+ + G S + L+D TI++IC+AA Sbjct: 274 GHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESICEAA 333 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD+LA +VIE +GR+LG IAI INLFNP+K++I G I +A +VL PAI CI Q+L Sbjct: 334 ANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIEEQSL 393 Query: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 + +L +V S ++ + AL+K+A+ +G+LL ++E Sbjct: 394 PVYHQDLELVESRFYKQATMPGAALIKQALYDGLLLMKVVE 434 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 162/400 (40%), Positives = 252/400 (63%), Gaps = 2/400 (0%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD- 66 Q G++D +KQ N+ AVYRLIDQ GP+SRI ++ +QLAPAS+TKI R+++E L++E++ Sbjct: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 ++A GR A+ +V ET +H + +R+ R + + L DLSSK++ EE L + L Sbjct: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEER 185 +++ I QF +Q+KL L +I++ LPG++D ++G +H MP + V+ L EALE+ Sbjct: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 V ++ HDI + +AE FGAS+ D I V + GAG+I++G + + ++ EI Sbjct: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH QV+P G+RC+CGN GCLETIA+ +I + L Q S + T+ ++C+AA Sbjct: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +GD LA ++I VG H+G+ +AI +NLFNPQKI+I +++A +L P I I QAL Sbjct: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 Query: 366 AFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 A+ ++ V ++ ++ + ALVK AM NG LL LL+ Sbjct: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 >UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea blandensis MED297 RepID=A4BDK2_9GAMM Length = 402 Score = 244 bits (622), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 138/400 (34%), Positives = 225/400 (56%), Gaps = 7/400 (1%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 + N+D VKQ N ++R+I +YG ISR Q+ E S LA SVTK+TR LIE+ L+ EV QQ Sbjct: 7 VANLDSVKQYNLMRLFRIIVEYGLISRTQLVEVSDLAAGSVTKLTRLLIEQNLVHEVAQQ 66 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S GR+A+ + +T + + R R + L DLS +L E PL + Sbjct: 67 QSERGRKAVLLAPKTDDIQILAARADRQHLYVGLCDLSGNLLQREAEPLNADNEDEFVAQ 126 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L ++ F+ ++ ++R ++ I V +PGLVD + G +++MPH+ V L + + + ++ Sbjct: 127 LTRSLRHFLTTHADQVRNVVGIGVTMPGLVDANRGIVNFMPHVPVHELPLADIITDALEM 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 C++ ++ALAE GAS +S+ + VH G GAGII N ++ G VGEIGHI Sbjct: 187 PCYINSFASAMALAEKQIGASFHARNSVFIEVHNGVGAGIILNNELYSGT--GVGEIGHI 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 Q++ LG+ C CGN+GCLET +++AI + +Q QS TI+ + +AA + + Sbjct: 245 QIDRLGKPCICGNYGCLETEVSDSAIVEHFNQ--RQALQSVDTERAETIQDVLQAAGELN 302 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A V++ H+G +A NLF P I++AG +T+A ++ P +E + T++L+ R Sbjct: 303 ENALAVLKEAAAHIGTAMATVANLFRPDSIILAGAVTQAWSLIHPVLEQQLKTKSLQV-R 361 Query: 369 TNLPV--VRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 P+ +RS++ +ALV++ +L G + L + Sbjct: 362 GLKPIELLRSDIYDSPWYSGYALVRQGLLEGDIFHTLFTD 401 >UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK-family transcriptional regulator) n=2 Tax=Proteus mirabilis RepID=B4EVY3_PROMH Length = 403 Score = 241 bits (614), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 129/397 (32%), Positives = 225/397 (56%), Gaps = 1/397 (0%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 ++D VKQ N V+RLID++GPISRI +++++ LAPAS+TKITR+L+E LI E + Sbjct: 6 SHIDHVKQFNLGTVFRLIDEHGPISRISLSKKATLAPASITKITRELVEAHLIHETEFPG 65 Query: 70 -STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 GR A+ + E++ + + +R+ +L +L ++++ E+ + P++ H Sbjct: 66 LGFRGRPAVGLKLESKGWQFLCIRVNNGSLLFSLRELDNQLVVEDTFDFPKQNSDAFLHH 125 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L AI F YQ ++ L AIS+ + +VDP SG I+ P+ +++ L + ++E+ V Sbjct: 126 FLAAIDTFFQRYQSRVERLTAISITMNAIVDPISGVIYSSPYYAIQDIPLADKIQEKTGV 185 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ H + + +AE +GA+++ D + + + GAG+++NG+ + + EIGH Sbjct: 186 AVFLQHSVTAWTMAESLYGAAKNNTDILQIVIDDIVGAGVVTNGKTLHSNSHSAVEIGHT 245 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 +V +C+CG GCLET + + ++ +L ++ S + T++T+C A GD Sbjct: 246 KVIDSQTQCYCGAKGCLETEISIPQLIKKAQHLAQENPTSILNQYPITVETLCDAVLIGD 305 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A ++I V + LG +A+ +N+FNPQKI+I + A L P I S I L + Sbjct: 306 KQALDIINLVAQRLGFILAVMVNIFNPQKILIGSPLCRAKSALFPLILSSIQHHVLPRYA 365 Query: 369 TNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 NL + +EL ++ + A +LVK A+ NG LL L++ Sbjct: 366 HNLVIEETELRNKGTLPAASLVKEALYNGSLLLELMQ 402 >UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH Length = 411 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 126/395 (31%), Positives = 218/395 (55%), Gaps = 4/395 (1%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G++DL++QLN VY ++++ +SR ++ + L+PAS+TKITR+L++ GL+ + + Sbjct: 15 GSIDLIRQLNYGLVYASLEEHKELSRTDLSRLTGLSPASITKITRELLDGGLVVTCGESS 74 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 GRR + R F + +RLGR + LFDL+ + LA + E + L +L Sbjct: 75 VGRGRRQTLLRINERRFQFLSMRLGRGYVDMALFDLAGRSLARHRHVFSEGERADLLASL 134 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + AI F+ +K L I++ LPG V+ SG + + P + NW L L+E F V Sbjct: 135 VRAIEGFLP---KKALRLACIALCLPGQVERHSGMVKHFPFYDLRNWPLGPTLQEAFAVP 191 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V D+R+ AE +GA+++C D++LV VH G G++ NG++ + +G++ H+Q Sbjct: 192 VLVSGDVRTWIQAEREWGAAKNCADAVLVFVHNDIGVGMVVNGQLIESESALLGDLSHLQ 251 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 +EP G+RC+CG FGC T+ N A+E + +L ++ + +P + TI+ +C+ A G+S Sbjct: 252 LEPYGQRCYCGGFGCACTLVTNQALEAQYRDLRERMQEYDLP-ESVTIRELCELALAGNS 310 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 L +++ L + ++ I L NP K+++ GEIT AD++L P + + +Q + Sbjct: 311 LCQDILHQAAGRLSRVLSNLICLLNPGKLLLGGEITRADRLLFPMLHQSLASQLPAEYLV 370 Query: 370 NLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLL 404 L + + V +A+ +G LL LL Sbjct: 371 RLQIESTHFYEDPTKPTSVQVHKALRDGSLLLDLL 405 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 219 bits (559), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/398 (32%), Positives = 214/398 (53%), Gaps = 12/398 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIE-RGLIKEVD 66 Q G+ + +K LN A+ +I GPISR +IA+ ++L P +V I +LI+ + +I+E Sbjct: 6 QTGSFEGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMVIEETG 65 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA--EEHYPLPERTQQT 124 + S GGR+ I + +++ IG+ R + L K+ EE P + Sbjct: 66 ESKSHGGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPPTKDEY 125 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 ++ L N + + + + K +++ I V + GLVDP G + PH+ +EN + + LE Sbjct: 126 ID-LLKNGVEKVLQQKRIKQNKVLGIGVGMHGLVDPQKGISIFSPHLHIENIPIKQELES 184 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 F + V +D+R+LALAE ++G +D + + + V G G+GI+ NG I+ G+ + GE Sbjct: 185 AFDIPVLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQYHSAGE 244 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS------RVPLDDCTIK 298 IGH V+ G RC CGN+GCLE A+ AI RV L+ G + + TI+ Sbjct: 245 IGHTVVDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKETDSQLTIE 304 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIES 357 + AA KGD+ EV+E GR LG +A IN+ P K+++ G I EA LL ++ Sbjct: 305 MVFDAAEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAGGNTLLSPLKE 364 Query: 358 CINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAM 394 I +L+++ ++ +V S+L + IGAF LV + + Sbjct: 365 IIKKSSLRSYSDDVSIVTSDLGKKGMVIGAFTLVLKEL 402 >UniRef50_B2Q2V0 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q2V0_PROST Length = 402 Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 125/392 (31%), Positives = 215/392 (54%), Gaps = 4/392 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q G++D +KQLN+ VYR+IDQYGPISRI +++QSQLAPAS+TKITR+LI+ L+KE++ Sbjct: 4 QTGHIDQIKQLNTGIVYRVIDQYGPISRIALSKQSQLAPASITKITRELIDAHLVKEIEF 63 Query: 68 QA-STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 GR AI +V E+ + + +RL + +++L +++++ + E+ YP + + Sbjct: 64 PVLGLRGRPAIGLVIESEGWQFLSIRLACNSISLSLKEINTQTIVEQDYPFDVKGNEQFS 123 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + L + I+ F +Y R L + AIS++L GLV+P SG I+ +P+ ++N L L E+ Sbjct: 124 NTLSSLISHFFATYSRHLERVTAISIVLDGLVEPFSGVIYALPYYDIDNLPLGHFLTEQT 183 Query: 187 KVTCFVGHDIRSLALAEHY-FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + ++ + +LALA+++ + ++ I +++ A II+NG Sbjct: 184 GLPTYIQPYVNALALADYFSLYEKRTAKNIIYLQIDCVVSAAIINNGIALDSHTRRAIHF 243 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+Q + GE C+CG GCLE A AI + + L S D TI + C A Sbjct: 244 GHVQTQNTGETCYCGGIGCLEGAIAIPAILKHAVELQHLYPSSSFFNHDITIDSFCLAVE 303 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 D L V+ + + L K + IN+F + I+I + V + ++Q++ Sbjct: 304 DQDPLCLHVLNDIAQILAKQLGQLINIFGTELILINSPLNRISSVFYSLLHQYCHSQSIP 363 Query: 366 AFRTNLPVVRSELDHRSAIGAFALVKRAMLNG 397 +R L + +SE+ + + ALV++A+ +G Sbjct: 364 LYRGELRIEQSEVTKKES--ETALVQQALYDG 393 >UniRef50_C0B3V0 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V0_9ENTR Length = 335 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 193/331 (58%), Gaps = 1/331 (0%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD- 66 Q ++D VKQ N V+RLID++GPISRI ++++++LAPAS+TKITR+L+E LI E + Sbjct: 4 QPSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKAELAPASITKITRELVEAHLIHETEF 63 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 GR A+ + E++ + + +R+ + + +L +L SK++ E+ + P+ Sbjct: 64 PDVGFRGRPAVGLKLESQGWQFLCIRVNKGNLLFSLRELDSKLVTEDTFDFPKEYSDDFL 123 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + L AI +F + YQ + L AIS+ + +VDP SG I+ P+ +++ L + + E+ Sbjct: 124 NHFLVAIDKFFERYQSHVERLTAISITMNAIVDPISGVIYSSPYYDIKDIPLADKIHEKT 183 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V+ F+ H + + +AE+ +GA+++ D + + + GAG+ISNG+ + + EIG Sbjct: 184 GVSVFLQHSVTAWTMAEYLYGAAKNNLDVLQIVIDDIVGAGVISNGKTLHSHSHSAVEIG 243 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H +V C+CG GCLET A + ++ L ++ S + T++T+C A Sbjct: 244 HTKVIDSENSCYCGAKGCLETEIAIPQLIKKAQLLAQEDPTSLLNKYPITVETLCDAILV 303 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQK 337 GD A E++ V + LG +A+ IN+FNPQK Sbjct: 304 GDKSALEIVNLVAQRLGFILAVMINIFNPQK 334 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 206 bits (524), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/389 (33%), Positives = 211/389 (54%), Gaps = 8/389 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ L+K +N + + I GPISR IA++++L P +VT I +LIE L++E Sbjct: 5 GSFQLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEKLVRESKMGE 64 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHA 128 S GGR+ I + + +N IG+ +G + L DL+ +V + L + T++TL Sbjct: 65 SRGGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGEVEGQTTVELSSDLTEETLIDQ 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L+ + + + ++I I + + G+VD SG + P+ Q+ N L E F V Sbjct: 125 LIKITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQLTNIDLKTPFESTFDV 184 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 FV +D R+LAL E +FG Q + I V V G GAGI+ N R+F G +G GEIGH Sbjct: 185 PVFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIAGEIGHT 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICK 302 V+ G++C CGN+GCL+T+A +++R ++ + G ++ + +D + + I + Sbjct: 245 TVDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRISGEIIHQ 304 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A GD L+ E++E G++LG I IN NP +I++ G +++A +L + + + Sbjct: 305 CALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVLEPLRKMVKER 364 Query: 363 ALKAFRTNLPVVRSEL-DHRSAIGAFALV 390 AL A VV +EL + +AIGA LV Sbjct: 365 ALTAKARETEVVTAELGEWGTAIGAVTLV 393 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 201 bits (511), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/393 (31%), Positives = 197/393 (50%), Gaps = 21/393 (5%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +L++ +N V RL+ G +SR +AE++ L +V+ + +L+E G ++E+ S+G Sbjct: 6 ELIRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGESSG 65 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVL------AEEHYPLPERTQQTLE 126 GR I + R IG LG L DL+ V E PL E Q Sbjct: 66 GRPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFKQRVESRDPLIEVDQ---- 121 Query: 127 HALLNAIAQFIDSYQR--KLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L A+ +D R + + + + G++DP+ G Y PH QV + + L+E Sbjct: 122 --LERAVRYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHYQVRDLPVAPMLQE 179 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 R + ++ +D R++A E FGA+Q ++ +RV G GAGII +GR++ G + GE Sbjct: 180 RLSLPVWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGE 239 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIK 298 IGHI V+ G RC CG+ GCLET+ + AI +R + + QG ++ + Sbjct: 240 IGHIMVKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIAT 299 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 T+ +AA+ GD +A E++ GR LG I INL NP ++I G + A L+ + Sbjct: 300 TVIEAADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAGDYLIEPLRQA 359 Query: 359 INTQALKAFRTNLPVVRSELDHRSA-IGAFALV 390 + L A R + +VR+EL + +G ALV Sbjct: 360 ALERTLPALRERVKIVRTELGEDAGPLGGAALV 392 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 197 bits (500), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 121/392 (30%), Positives = 205/392 (52%), Gaps = 14/392 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + +IGN +L+K +N + V I GPISR I++ L ++VT I +L + L+ EV Sbjct: 2 KLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHEV 61 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 + STGGR+ I + + IG+++ ++ L +L S+++ + P + T Sbjct: 62 GEADSTGGRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNS-- 119 Query: 126 EHALLNAIAQFIDSYQRKL---RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA- 181 + +LN + + I+ K+ + L+ I V + GLVD GK+ Y + NW VE Sbjct: 120 -NTVLNMVVENIEKLITKIPYNKNLMGIGVAVSGLVDQQKGKLIYSGML---NWSNVEIG 175 Query: 182 --LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 LE +F V ++ +D+ + LAE ++G ++ + I+V G G+GI+ N +++ G Sbjct: 176 NILENKFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDF 235 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL-DDCTIK 298 G GEIGH+ + G +C CG GCLE A+ I + + +K +S++ L +D +I+ Sbjct: 236 GGAGEIGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIE 295 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + + A +GD LA +V+ ++LG + INL NP I++AGE A ++LP I Sbjct: 296 KVYEYAKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDI 355 Query: 359 INTQALKAFRTNLPVVRSEL-DHRSAIGAFAL 389 + K + + SEL D IGA L Sbjct: 356 VKNNFFKMHEKKVQIKVSELGDEGWVIGASTL 387 >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 205/395 (51%), Gaps = 13/395 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 Q G+ L+K LN + V +I + GPISR I++Q+ L P +VT I L++ GL+KE Sbjct: 3 QGMTGSFRLMKSLNRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVKEG 62 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ--- 122 AS GGRR + + N + IGV +G + L +L++++L + LP + Sbjct: 63 RTGASKGGRRPVLLSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIKAGE 122 Query: 123 -QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 T+ + L++ + D + K+ + I + + G+VD + G Y PH L E Sbjct: 123 FMTILYRLVDDMITNSDVSRDKI---VGIGIGMHGIVDEEKGISIYAPHFDFGELPLKER 179 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 LE R+++ V +D R A+AE +FG ++ + + + V G GAG+I NG+I G + Sbjct: 180 LEARYEIPVKVENDARCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQIHRGHHHI 239 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS-----RVPLDDCT 296 GE+GH+ V+ G +C CG++GCL T+A+ I +R ++ + G + R +D Sbjct: 240 AGELGHMIVDLNGRQCTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMRENKEDID 299 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 + I +AA GD A E+ GR LG + IN NP +IV+ G + +A ++ + Sbjct: 300 GEVIYEAALHGDEFAEELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFVMKPLV 359 Query: 357 SCINTQALKAFRTNLPVVRSEL-DHRSAIGAFALV 390 +N +AL + S L H + +GA +L+ Sbjct: 360 ETVNRRALTDDARKTEITVSSLGSHSALLGAVSLI 394 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/398 (31%), Positives = 205/398 (51%), Gaps = 16/398 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q G L+K +N + + I PISR +IA+++++ P +V+ I ++LI +GL+KE Sbjct: 2 QRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTL 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE----HYPLP-ERTQ 122 S+GGR+ + T ++ IG+ G L DL+ +L PL ER Sbjct: 62 GRSSGGRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERFM 121 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + L+ ++ AI D Q K+ I I + + G+VD ++G P + + N + + L Sbjct: 122 EVLKESVY-AILGRADVEQEKI---IGIGIAMHGVVDAETGMSRIAPILNLTNIPIKDVL 177 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E+ F +T V +D R++AL E +FG D V + RG GAGI+ NG+++ G G Sbjct: 178 EQEFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIA 237 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GE+GH+ ++ GE+C CGN GCL+TI + AI +R LK+ D T K + + Sbjct: 238 GELGHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKE------STDSLTAKDLFE 291 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A G E+ + G +G + I+L NP KIV+ G + + + +LPAI I + Sbjct: 292 MAENGCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQK 351 Query: 363 ALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAMLNGIL 399 AL A V ++L D + GA +L+ + + +L Sbjct: 352 ALTAEARQTEVTITKLGDEATLYGAVSLLLAELFDPVL 389 >UniRef50_D1NYQ4 Protein mlc n=3 Tax=Providencia RepID=D1NYQ4_9ENTR Length = 403 Score = 191 bits (484), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 121/401 (30%), Positives = 219/401 (54%), Gaps = 5/401 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q G++D +KQLN+ VYR+I Q+GPISRI +++QSQLAPAS+TKITR+L++ LI+E + Sbjct: 4 QTGHIDQIKQLNTGIVYRVIAQHGPISRIALSKQSQLAPASITKITRELMDAHLIQEREF 63 Query: 68 QA-STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 GR AI +VTE+ + + +R+ + T++L ++SSK LAE Y + Q Sbjct: 64 PVLGLRGRPAIGLVTESEGWQFLAIRIENNQLTLSLKEISSKTLAENSYSFDVKGNQQFC 123 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 L ++ F + + L + AIS++L G++D SG I+ +P+ ++ + L E+ Sbjct: 124 LQLSALMSLFFEQNKNCLERVTAISILLDGILDSSSGVIYRLPNYDLDALPISNYLTEQT 183 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSIL-VRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + ++ + +LAL ++ ++Q +I+ +++H +++ + + Sbjct: 184 GLPVYLNPSVNALALMDNLSYSTQRRNKNIIYLQLHDVVNIAVLNQEKSLDSSTRHPILF 243 Query: 246 GHIQVEPL-GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GHI VE L G C+CG GCLET+ + ++I ++ LL S + + I+ IC+ A Sbjct: 244 GHIPVEILQGLDCYCGGKGCLETLVSVSSILKQARILLADYPASILNQKEINIEAICQGA 303 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 N DSL ++++ V + L +A+ IN+ Q I+I + +D+ + IN Sbjct: 304 NIADSLCLKILDSVAQQLAHPLAMMINILGTQLILINSPLNSSDEYWYTQLHHYINLYVN 363 Query: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 +R+ L + +S + + A++ ++ +G LL LL+ Sbjct: 364 PLYRSKLLIEKSTFSIKES--ETAVIHHSLYDGSLLLKLLQ 402 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/362 (30%), Positives = 188/362 (51%), Gaps = 8/362 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G++ L+++LN + I Q+GPISR IA++ ++P +VT +LI G++ E Sbjct: 5 GDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAEDGTGE 64 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHA 128 S GGR+ I + IGV + TI +L + ++ YP+ + Sbjct: 65 SKGGRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEAATKQKKIYPVKAGLVSDLIIQY 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 +L++I F+ S R L IS+I PG+VD SG I + +++ + L + EERF + Sbjct: 125 VLDSIGDFLQSVDDVSRCL-GISIIAPGIVDAASGVIRFNSKLRLHDVPLKDMAEERFGL 183 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ +D ++ALAE FG + ++ + V V G G+G++ NG IF G G GE GH Sbjct: 184 NTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGSRGGAGEFGHT 243 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICK 302 V+ G RC CGN GCLE A AI +L+ + +G ++ V + T + Sbjct: 244 TVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADGDMTRITFDVFRQ 303 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A ++GD + ++++ + ++ I +NLFNP I++ GE+ ++VL I+ + Q Sbjct: 304 ALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGGEMIRDNQVLFERIQKQVMAQ 363 Query: 363 AL 364 A+ Sbjct: 364 AM 365 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 108/374 (28%), Positives = 189/374 (50%), Gaps = 20/374 (5%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 GN L++ LN + V I GPISRI++A++++L+P++V ++LI G + E+ + Sbjct: 7 GNHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVSEIGTGS 66 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 S+GGR+ I + N + V + + +L +KV A+E +P+ + + L Sbjct: 67 SSGGRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAKETHPIAGLQGEAVIERL 126 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 L + F+ + Q L + IS+ +PG+V G +HY +++ N L E+R+ + Sbjct: 127 LQLMDDFM-AGQEDLERCVGISINVPGIVSDSHGVVHYNTKLRMTNVPLKRIFEDRYGMR 185 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 +V +D+ S+ LAE FG + I + + G G+GI+ N + G++G GE GH Sbjct: 186 TWVENDMNSVVLAERRFG-DYAFANLIYISIGDGLGSGILINDHLLRGKHGGAGEFGHTS 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQG------------YQSRVPLDDCTI 297 V G RC CGN GCL++ + A+ R++ + G Y VP Sbjct: 245 VNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKIVP------ 298 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 +A KGD LA ++ E V HLG I +N+FNP+ +++ G++ + LL + Sbjct: 299 SVFKEALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALILGGDLAHGNPELLDMVSV 358 Query: 358 CINTQALKAFRTNL 371 I+ A+ + ++ Sbjct: 359 YIDRHAMPILKDDM 372 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 124/408 (30%), Positives = 205/408 (50%), Gaps = 27/408 (6%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 ++GN+ LVK+LN ++ +I ++ ISR Q+A+ + L PA++T I R L+ G + E Sbjct: 4 EVGNLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKGL 63 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S GGRR + + + + +G + R+ T+ + +L +K L + Y + Q Sbjct: 64 GKSNGGRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQYNIDMTDPQQGLS 123 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPH-------IQVENWGLVE 180 L + + + I + + ++ + V PGLVD + + P+ I +ENW Sbjct: 124 RLADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRDIPIENW---- 179 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 L+E + FV ++ + A+AE+ FG ++ ++ + + G AGII NG + G G Sbjct: 180 -LQEMTGIKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRG 238 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD------- 293 GEIGH+ ++ G C+CGN GCLE++ A A+ ++ N L Y + PL Sbjct: 239 YTGEIGHLVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSL-YNQKDPLKAIWLEKG 297 Query: 294 DCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLL- 352 + I+ I AN S A ++I G ++GK IA IN+FNP+ I I G + EA LL Sbjct: 298 EVKIEDIMANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLD 357 Query: 353 PAIESCIN---TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNG 397 P IES + ++ R L +R + GA A+ RA+ G Sbjct: 358 PLIESVQKHAFPELVREVRIELSSMRKDTGF---YGACAIAIRALFEG 402 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 195/361 (54%), Gaps = 12/361 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 ++GN +K LN +++LI + GPI+R ++A+ + + +++ + LI++G + E Sbjct: 2 NVKVGNSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIET 61 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQ 123 ++ S+GGR+ + + + I V + I LF+L KV+A+ +P+ P + ++ Sbjct: 62 EKGYSSGGRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVAKTVFPINGPAQAKE 121 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 T+ + + I + + + K +++ I V +PGL+D + G + + P++ +V+ E Sbjct: 122 TISQ-IFSEIEKILSEREIKPDKILGIGVAVPGLIDKEEGLLEFAPNLGWSKVPIVKYFE 180 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 +++ V + ++ + A+ E F D +D + V ++ G G G+I NGR++ G GN G Sbjct: 181 DKYGVPVVLENEANAAAVGEKEF-VYPDIKDMVYVSINEGIGCGLIFNGRLYRGAGGNAG 239 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E GHI ++ G CHCGN GC ET+A+ N +++ YQ ++ I + Sbjct: 240 EFGHIIIDSDGPLCHCGNSGCWETLASE--------NHIQKEYQELTGEENVEKNEIYRK 291 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A +G+ A V++ ++G +A +N +P+ IV+ G I EAD +++ ++S + + Sbjct: 292 AIEGEDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGGGIIEADTLIIDTVQSILKEKC 351 Query: 364 L 364 L Sbjct: 352 L 352 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 103/359 (28%), Positives = 189/359 (52%), Gaps = 7/359 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N+ ++ N + V I + GPISR I++ ++L+P++V+ I LI G++KE + + Sbjct: 5 NIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLINVGIVKETPAKVT 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 GRR I + ++ IG+ + + T L LS K+L + L + +++ Sbjct: 65 KVGRRPIELTLNETGYYPIGIEIEKDKITGILMALSGKILKSKVINLNTTDVNEVLGSVV 124 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK-VT 189 N I+ ++ E+I + V +PG ++ G + P++ N + E L + K Sbjct: 125 NVYRSLIEDVNKE--EIIGVGVAVPGTINRKEGVCIFSPNLGWRNINIKEYLGQYIKDYP 182 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 F+ H I+++ E ++GA ++ I VRV G AG + +G+++ G N GE GH Sbjct: 183 LFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRGPNDRAGEFGHTV 242 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT----IKTICKAAN 305 +E G++C CG++GCLET + + ++V +++ ++V +++ T + I +A Sbjct: 243 IERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKNAYTKVNIENKTKDEILDEIIEAGK 302 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD + E +G +LG IA INLFNP+ I+IAG +++A ++LL + +N A Sbjct: 303 SGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLLEPVRRIVNLHAF 361 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/371 (30%), Positives = 192/371 (51%), Gaps = 9/371 (2%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 L K +N + +I + GPISR I++++ L P +VT + +L+E L+ E S+GG Sbjct: 11 LQKGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVLEDIMGESSGG 70 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 R + F+ + + + T L D KV + Y + +Q + + I Sbjct: 71 RPPQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVYDIERLEKQKILDLMFEVI 130 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 + I S + E+ A+ V++ G V G + P+I N + + ++ERFK V Sbjct: 131 DELIKSASQ---EVPALGVVVHGPVKAREGVSVFAPNIGWRNVPIKKLVQERFKKPVCVE 187 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D+R++ L E Y+G+ + ++ + +++ G G+ II +G+IF G + + GE GH V+ Sbjct: 188 NDVRAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDSAGEFGHTTVDIG 247 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKG 307 G RC+CGN+GCLE +++ AI + V+ LK G S V L+ T + +AA++G Sbjct: 248 GPRCNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKVTPDHVYRAADRG 307 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D L+ V++ R+LG IA IN NP+ IVI G I +A + I + +AL Sbjct: 308 DELSLSVLQEAARYLGIGIANIINSINPKVIVIGGGIIKARLHIEEIINKSVEERALTNA 367 Query: 368 RTNLPVVRSEL 378 + +V SEL Sbjct: 368 YQSCDIVFSEL 378 >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 22/382 (5%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR--RA 76 N AV I PI R +IA + L+ +V KIT + E GLI E ++ S G+ + Sbjct: 13 NKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYESGKRTSEVGKPPKL 72 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP------LPERTQQTLEHALL 130 +S V + + + IGV +G L DLS+K+L E P P+ +QT++ Sbjct: 73 LSFVPDAK--YIIGVDVGTTHVGAVLMDLSAKILLREWAPTHDGHTFPQVLEQTIQ---- 126 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 I + +D+ +++ I V +PGL+ ++GKI P I + L+ERF++ Sbjct: 127 -CIQKILDASSEYAGKILGIGVGVPGLISVETGKIILSPAIGWHEGNFLAPLKERFRLPV 185 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V + +R++A+ E +FGA + E+ + + G G+ I+ +I+ G G GE GH+ + Sbjct: 186 VVDNVVRAMAMGELWFGAGRGLENFFCIGLGYGIGSSIVIGKQIYSGSTGTSGEFGHMTI 245 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAA 304 + G C CG +GCLE IA+ AI ++ + G S + L+D K + AA Sbjct: 246 DKSGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAKVVFDAA 305 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GDSLA+ ++ V +LG I+ INL +PQ I++ G +++A LL + ++ L Sbjct: 306 KAGDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDEVSRHVL 365 Query: 365 KAFRTNLPVVRSELDHRSAIGA 386 ++ V+ S + AIGA Sbjct: 366 PVKEPHI-VISSLGEDAVAIGA 386 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 127/397 (31%), Positives = 204/397 (51%), Gaps = 26/397 (6%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 +TPG QA + +Q N V + + G +++ +IA + L+ ASV+ I R L G Sbjct: 7 VTPGSQAAL------RQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEH--YPLP 118 ++ ++ S+ GRRA ++ + + + T+ L + +VL EE Y + Sbjct: 61 VVSV--RETSSNGRRARAVTLQRPPGVLVAIDFTHSRLTVALGNTDGRVLQEESIAYDVS 118 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELI-AISVILPGLVDPDS---GKIHYMPHIQVE 174 E + + A+ + + + + R R ++ ++ +PG VDP + G I MPH Sbjct: 119 EDPVRGVRRAVW--LTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIGDITSMPHWAGF 176 Query: 175 NWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI 234 N G L+ER + V +D ALAE GA++ E + V+V G GAG+I GR+ Sbjct: 177 NPG--AELQERLGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRL 234 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 F G NGN GEIGHI ++ G+ C CGN GCLET+ + L++L Q Q RV Sbjct: 235 FRGMNGNAGEIGHIGLDERGQVCRCGNRGCLETLVGTPYL----LDMLPQ--QGRVK-HG 287 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 ++ + +AA +GD +I G LG+ +A+ +N+ NPQ +++ GEI EA ++LL Sbjct: 288 ASLVDLLEAAQEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDP 347 Query: 355 IESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALV 390 + + AL T L +V EL R+A+ GA +V Sbjct: 348 MRRAMELGALGNALTGLRLVTGELGERAALRGALQVV 384 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 114/384 (29%), Positives = 197/384 (51%), Gaps = 28/384 (7%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MTPG Q + ++ N A + + Q G ++++++A + L+PA+V+ I ++L G Sbjct: 1 MTPGSQTSL------REANRARIVSAVQQRGSLTQVELAGVTGLSPATVSNIVKELTGAG 54 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIG-VRLGRHDATITLFDLSSKVLAEEHYPLP- 118 ++ S GRRA VT RN +G + G + + D++ +++A++ PLP Sbjct: 55 VLHT--SPTSRSGRRAQQ-VTLARNLGLVGGIHFGSRSLRVAVADVAHRIVADQRMPLPP 111 Query: 119 -ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG 177 R LE A L + + ++S L+E++A+ V +P VD +G+I + ++ W Sbjct: 112 DHRADAGLERAAL-LLTEMVESVDSSLQEVLAVGVGVPAPVDVRTGQISTIGVLR--GWD 168 Query: 178 LV---EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI 234 + E LE R + +V ++ ALAE FGA++ + + +R+ G G GI+ NG + Sbjct: 169 GICVPEVLERRLGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLNGEV 228 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 F GR+G GEIGH+ ++ G C CGN GCLET + L++L + Sbjct: 229 FHGRSGTAGEIGHVTIDDNGPICRCGNRGCLETFVGAPVL----LSMLTASH------GH 278 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 T+ + A +GD VI GR+LG A NLF+P+ +V+ G + EA +L+ Sbjct: 279 LTLPDVIARAQQGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPILMDP 338 Query: 355 IESCINTQALKAFRTNLPVVRSEL 378 + + + + + + + VV SEL Sbjct: 339 LRTVLAQRTVPSTAGPVEVVASEL 362 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 110/398 (27%), Positives = 194/398 (48%), Gaps = 16/398 (4%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N VK+ N V LI ++GPI R ++A+ + L P ++T I R+L+E GL+ E S Sbjct: 7 NSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIRELLELGLVHEDGYGES 66 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 GGRR + + ++ + IGV + R + T+ + DL + YPL +L Sbjct: 67 RGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARYPLDMSEPAAGLASLA 126 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI--QVENWGLVEALEERFKV 188 + + ++ ++ R + + + PGLV +G + ++ ++ L E LE+ + Sbjct: 127 ELLRRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKLEDVLGL 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ + LAE +FG C D + V + G AG+I + RI G G GEIGHI Sbjct: 187 PVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYAGEIGHI 246 Query: 249 QVEPLGERCHCGNFGCLETIAA-NAAIEQRVLNL--------LKQGYQSRVPLDDCTIKT 299 ++ G +C+CGN GCLE + + A I+Q +L LK +QS ++ + Sbjct: 247 VIDESGPQCNCGNHGCLEALCSVPALIKQARRDLPGLADGDPLKARWQSSGDIELADLLA 306 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + + ++L S + ++GR +A INL+NP+ + + G++ A P + + Sbjct: 307 VAQPGTYANALLSRAVHWIGR----AVAAVINLYNPEAVFLGGQLAGAMARFEPILRDAV 362 Query: 360 NTQALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAMLN 396 A + + S L ++ IGA AL + +L+ Sbjct: 363 AAHAFPEIASATRIAFSALGEYPGVIGACALALKGLLH 400 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 99/337 (29%), Positives = 168/337 (49%), Gaps = 5/337 (1%) Query: 48 SVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSS 107 SVT + +LI+ + + + GRR + T++ + + + HD I ++ Sbjct: 54 SVTSLVEELIDNQWVTPIGTATGSNGRRPVLFGLNTKSHYVAVLDVSTHDTKILFMNVQR 113 Query: 108 KVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHY 167 KV+ Y L + +L++ + + + +LIA+ + +PGLVD G Sbjct: 114 KVIFRGDYDLRLNDNPSFLTSLVHYFHNALADSEISIDDLIAVGISMPGLVDARRGLNLT 173 Query: 168 MPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAG 227 ++ L + L ++ +D ++ L E FG +Q + + + + G G G Sbjct: 174 YKNLHQTGESLPQWLSAELNKPVYLINDTKATVLGESRFGGAQGKKQVLAINIDWGVGLG 233 Query: 228 IISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ 287 II NG +F G +G GE+GHIQV+P GE C CG GCL TI + +A+ +R + G Sbjct: 234 IIVNGEVFQGASGFAGELGHIQVDPDGELCFCGKIGCLSTITSASALVKRAQTDILAGQV 293 Query: 288 SRVP-----LDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG 342 S++ +D I + AAN GDS A +++ G LGK +AIAI+LFNP+ IV+ G Sbjct: 294 SKLATFRDHVDQIDIDEVINAANSGDSYAIDILHETGYQLGKGLAIAISLFNPEIIVVDG 353 Query: 343 EITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 + +A +L IE I+ L FR ++ + ++L+ Sbjct: 354 VLFKAAAFILNTIEQAISKYCLSDFRNDMTIEVTQLN 390 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 119/392 (30%), Positives = 203/392 (51%), Gaps = 13/392 (3%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 NS+ + +I + ISR +IA +++L+P++V+ I L GL++ + S GGRR Sbjct: 19 NSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSGLVRSIGAGVSRGGRRPTL 78 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEH--YPLPERTQQTLEHALLNAIAQF 136 I F IGV +G T L DL +V A H + + E + TL+ + + + Sbjct: 79 IGFCDDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVREDPKGTLQK-VRELVQEV 137 Query: 137 IDSYQRKLRELIAISVILPGLVDPDS-GKIHYMPHIQVENWGLVEALEERFKVTCFVGHD 195 +D+ + R + + + +P V P + GK+ + ++ + E+L F + FV +D Sbjct: 138 LDAERVPRRSVAGMGIAVPSPVHPSAPGKLSPLLVPAWRDYDVQESLRSAFGLPVFVDND 197 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 AL+E Y+GA + ED +++ G G+G I +G ++ G G GEI H+ V+ G Sbjct: 198 ANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGAGGTAGEISHMAVDSSGP 257 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 +C CG GCL T+ +AA+ +R L+ G + + L T++ + + A G+ A +VI Sbjct: 258 QCVCGLRGCLVTLIGSAALLERARELM--GRKDKRAL---TVRELVEGARAGEPAARQVI 312 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 + +G +LG +A +NL NP +V+ GEI+ +LL + + + +AL +V Sbjct: 313 DGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRASVRKRALSTSMAETRIVT 372 Query: 376 SELDHRS-AIGAFALVKRAMLNG---ILLQHL 403 S L R+ A+GA LV +A L LQH+ Sbjct: 373 SALGDRAIAVGAATLVLQAALRDRTLFPLQHI 404 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 111/387 (28%), Positives = 190/387 (49%), Gaps = 22/387 (5%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G A G+ +++ N + + + Q+G ++++++A + L+ A+++ I ++L+ G+++ Sbjct: 3 GRAATSGSQSSLREANRSLIVDTVKQFGGLTQVELAGATGLSAATISTIVKELLGAGVVE 62 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 + S GRRA + R A GV++G + L D S V+AE+ PLP + Sbjct: 63 V--RPTSRSGRRAQMVTLARRVGLAAGVQVGHRSMRVVLGDFSHTVVAEQSLPLPH--EH 118 Query: 124 TLEHALLNA---IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG--- 177 L+ L A IA ++ + EL+ + + LP VD +G I ++ W Sbjct: 119 LLDTGLDRASLLIADLLERVGSPIDELVGVGLGLPAPVDGATGMISVRGVMR--GWDGEH 176 Query: 178 LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 L + +R V +D ALAEH GAS++ DS+ VR G GAG++ NG ++ G Sbjct: 177 LAHVMSKRLARPVHVDNDANLGALAEHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRG 236 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 G GEIGH+QV+P G C CGN GCL+T+ A+ + R + T+ Sbjct: 237 YAGTAGEIGHVQVDPQGAICRCGNRGCLDTVVGADALLASL----------RASHGNLTL 286 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 + + A GD + ++ G +G +A NPQ +V+ GE+ E ++LL + Sbjct: 287 RDVIALATDGDRGCARLVADAGEAIGTVVAGLCAAVNPQVVVVGGELAETGEILLGPLRD 346 Query: 358 CINTQALKAFRTNLPVVRSELDHRSAI 384 + L+ L VV +EL R+ + Sbjct: 347 AVRRGVLRNQIAPLEVVAAELGPRAEV 373 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 119/393 (30%), Positives = 200/393 (50%), Gaps = 23/393 (5%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N LV+++NSA ++ +I Q IS+ ++++ S + PA+++ I L G+++ D A Sbjct: 7 NSALVRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRR-DTDAP 65 Query: 71 TG--GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 TG GR ++ + R + G+ + I + + A+ P T A Sbjct: 66 TGRAGRPTTALSLDPRAGYLAGISVEPDAIRIVISTIDGTACADLAVP-----GSTAPEA 120 Query: 129 LLNAIAQFIDSYQRKLRE----LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + A + + R LR L+A V +P LV G+I + P+I + + E L + Sbjct: 121 AIAAARSGVTAALRSLRATRATLLAAGVAMPALVS-TGGRIVFAPNIGWRDLDVAENLAQ 179 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + KV V +D+++ ALAEH FGAS+D D + V G G G+ G ++ G +G GE Sbjct: 180 KLKVPVRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHGLAGE 239 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IGH+++ P G C CG GC E + AI + +L +G+ +R D +++ C+A Sbjct: 240 IGHMKIVPGGRACGCGGQGCFEAYVSEKAI---LSDLAARGHGAR---DVASVRKACEA- 292 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD +A V+ GRHLG +A IN+ +P++IV+ G + + LLPA + AL Sbjct: 293 --GDPVARAVLAEAGRHLGLALANLINIISPRRIVLGGSLAQLAPFLLPAAMETLEANAL 350 Query: 365 KAFRTNLPVVRSELD-HRSAIGAFALVKRAMLN 396 A ++ +V SE+ +A+G AL + L+ Sbjct: 351 AAIYRDVEIVVSEMSGSAAAMGGIALALQQFLD 383 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 109/380 (28%), Positives = 185/380 (48%), Gaps = 22/380 (5%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +K++N + LI+ GPISR +IAE + L PA+V+ I + L++ L++E Q S GGR Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDLLKMDLVRETRQGESRGGR 60 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 + I + + IG+ G + L +L+ KV+ + + + I Sbjct: 61 KPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIKKQVDSFKPEWFLKTTV-TIF 119 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 + + Y ++ + + + GLVDPD G Y PH EN + + L++ ++ + + Sbjct: 120 EEVTGYVENPDKVFGLGIGIHGLVDPDEGVSLYAPHFGWENIKIGKLLKQELQIPIMLDN 179 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 D+R +ALAE + G ++ I + G G+ I+ G + GR+ GE GH+ + G Sbjct: 180 DVRMMALAEKWEGR----DNFIFINTGPGIGSAIVIKGELLYGRDFGAGEFGHMTIVEDG 235 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE- 313 C CGN GC+E + + V NL+++ Y +P + + I + N LA E Sbjct: 236 ALCSCGNRGCIEALVS-------VNNLVRE-YNDSLP-EHISFHDIKREWNLLIDLAREE 286 Query: 314 ------VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 +IE G +LGK I +NL NP+ +VI G+ A ++ P I+ + ALK Sbjct: 287 KSRAYSIIEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIFPVIKEQVLETALKVP 346 Query: 368 RTNLPVVRSELDHR-SAIGA 386 +L + + + AIGA Sbjct: 347 SRDLEITGTAFGEKVGAIGA 366 >UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=Micrococcineae RepID=D1BAZ9_SANKS Length = 420 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 117/391 (29%), Positives = 196/391 (50%), Gaps = 23/391 (5%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ +++ N A + I ++G ++++++ + L+PA+++ I ++L+ G+ VD Q+ Sbjct: 5 GSQSSLREANRALIVDTIKKFGGLTQVELVAATGLSPATISTIVKELLGGGI---VDTQS 61 Query: 70 ST-GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLE 126 +T GRRA + R GV+ G + L D V+AE+ PLP R+ L+ Sbjct: 62 TTRSGRRAQMVTLARRVGLVAGVQFGHRHLKVALGDFGRTVVAEQTMPLPVDHRSDTGLD 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG---LVEALE 183 A L + + ++ + EL+ I + +P VD +G+I H + W L + L Sbjct: 122 RAAL-LVVELLERVGAPIDELLTIGLTVPAPVDVSTGEISV--HGIMRGWDGQQLGQVLS 178 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 ER V +D + ALAEH GA + +D + VR+ TGAGI+ G + G G G Sbjct: 179 ERLARPVVVDNDANAAALAEHELGAGRGYQDVVFVRMSYSTGAGIMLGGHLHRGFAGTAG 238 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 EIGH+QV+P G+ C CGN GCL+T+ ++ A+ L+LL+ + D T++ + Sbjct: 239 EIGHVQVDPRGDICRCGNRGCLDTVVSSTAL----LDLLRGSH------GDLTLRDLVSR 288 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD V+ G +G +A NPQ +V+ GE+ A +V++ + + Sbjct: 289 ALAGDLGCRRVLADAGERIGGVVATLAGTLNPQLVVVGGELAAAGEVIVEPLRQAVLRHV 348 Query: 364 LKAFRTNLPVVRSELDHRSAI-GAFALVKRA 393 L VV EL ++ + GA L RA Sbjct: 349 APNTVAPLEVVPGELGEQAEVTGALLLALRA 379 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/369 (28%), Positives = 187/369 (50%), Gaps = 10/369 (2%) Query: 33 ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVR 92 ISRI+++ +L PA+VTKI ++L LI+ + STGGR S+ R +G+ Sbjct: 21 ISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTGGRPEKSLKINHRYKMILGIN 80 Query: 93 LGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISV 152 G L L ++L + R+Q+ + L I ++ Y + +++ I + Sbjct: 81 FGPEFIETALSYLDGELLCMKRRNFYIRSQEKILRILFEEIDNVLEEYSKD--DILGIGL 138 Query: 153 ILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDC 212 L G V+ + G + PH +N + E +E+++ + + +D+R++A+AEH FG +Q+ Sbjct: 139 ALHGTVNREKGISIFSPHFGWKNLNIQELIEKKYSLPVIIDNDVRAMAIAEHEFGRAQNT 198 Query: 213 EDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ-VEPLGERCHCGNFGCLETIAAN 271 ++ +++ + G G I NG+ + G + + GEIGHI VE RC CG +GCLE +++ Sbjct: 199 DNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITAVENSSRRCSCGKYGCLEAESSD 258 Query: 272 AAIEQRVLNLLKQGYQSRVPLDDCTIKT--ICKAANKGDSLASEVIEYVGRHLGKTIAIA 329 AI+ +VL L++ Q +V D ++KT I K A + V+ +GK + Sbjct: 259 EAIKNKVLTELEK-IQEKV---DISLKTEDIYKMAAEKKEPYFSVVRNSSYEIGKAVGNL 314 Query: 330 INLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL-DHRSAIGAFA 388 +N+ N + +++AG I D + + I L +L V ++L D GAF+ Sbjct: 315 LNILNIKLVIVAGRIVNTDSLFFVNLNKGIKKNILDGLEKDLHTVPAKLYDSIGIYGAFS 374 Query: 389 LVKRAMLNG 397 LV + G Sbjct: 375 LVTTNLFKG 383 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 107/357 (29%), Positives = 186/357 (52%), Gaps = 9/357 (2%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 QLN +V +I PI++ QIA Q+ L+ +V KIT + LI+ + S GG+R Sbjct: 3 QLNRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFERNHLIRVNGKGESNGGKRP 62 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQQTLEHALLNAIA 134 + ++ IGV +GR + DLS K++ +E +QQ +E L+ I Sbjct: 63 ELLEIIPDAYYIIGVDVGRSRIKAIIMDLSGKLIVKESIKTGRTVPSQQLIER-LIYLIH 121 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 Q + + + + + + +PGL+D ++G + + P EN LV+ +E+ F + + Sbjct: 122 QVVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFHWENVELVKPIEDHFPFYTILEN 181 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 R++A+ EH+FGA + I + + G G+ I+ NG + G G+ GEIGHI +E G Sbjct: 182 SNRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHITLEKDG 241 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGD 308 C CGN GCLE +A+ A+ + L++QG R+ ++ K I AA +GD Sbjct: 242 PLCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDAAKEGD 301 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 + A+ +++ ++G +A INL +P +++AG +T A L+ ++ I + +K Sbjct: 302 AAAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKRVIKARQMK 358 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 160 bits (405), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 107/388 (27%), Positives = 192/388 (49%), Gaps = 22/388 (5%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 ++N LI GP+S+ IA+Q Q++P + I +LI+ G ++E STGGR+ Sbjct: 5 EVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYVQEEGVGHSTGGRKP 64 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQF 136 + I + L I +L V +E++ + + ++ +++F Sbjct: 65 VLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSEQYGQVDSLRGEAYIDFVMKTLSEF 124 Query: 137 IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDI 196 I ++ KL E + IS+++PG+V + G + Y + + + L + +E F + +V +D+ Sbjct: 125 IGRFE-KLDECLGISIVVPGIVQAERGIVSYNAKLDLYDVHLKQKVEAAFGLRTYVDNDM 183 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 ++ +AE FG ++ ++ + + V G G+G+ NG I+ G +G+ GEIGH+ V P G Sbjct: 184 NAMMMAEKQFGTAR-YKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIGHMSVLPGGPA 242 Query: 257 CHCGNFGCLETIAANAAIEQRVLN-LLKQGYQSRV------------PLDDCTIKTICKA 303 C CGN GCLE AI R+L+ L QG ++ + P D +A Sbjct: 243 CPCGNQGCLENYVNWPAIYSRILSAWLTQGVKTAIIESAAGRPEAIKPTD------FVEA 296 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD A V+E + L I +++L NPQ +V+ G + + L + IN++A Sbjct: 297 ACAGDPFALTVVEEMAESLAVAITNSLHLLNPQAVVLTGPHVQNNLPLFKRLNEKINSRA 356 Query: 364 LKAFRTNLPVVRSELD-HRSAIGAFALV 390 L + V + L+ ++ +GA A++ Sbjct: 357 LNPIARHTEVKPASLETNKDILGALAVL 384 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/378 (28%), Positives = 189/378 (50%), Gaps = 14/378 (3%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 D +K+ N V+++I PISR IA+Q+ ++P +V++I +L E G + E ++QAS G Sbjct: 7 DFMKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAG 66 Query: 73 -GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALL 130 GR++ I +IGV L RH A I D+ VL + + T + Sbjct: 67 RGRKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETADVTVTRIA 126 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 I + I R ++ I V LPG++D D+G +++ + +N GL E L+E + Sbjct: 127 ETIEELIAECDIDRRRVVGIGVGLPGIIDVDAGIVNFSVQLGWKNVGLAERLKELTGLQA 186 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V ++++ ALAE G++ ++L+ G G+ +I G I+ G + GEIGH V Sbjct: 187 VVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSAGEIGHTTV 246 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 +P G C CG GCL+T + +LL + + + P+ TI+ + G Sbjct: 247 DPEGMMCDCGKAGCLQTYI-------NIPSLLSEASKIK-PVR--TIEELFAERRAGTRW 296 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAFRT 369 AS +I+ ++ TI ++++NP ++++GE + +V + C + + + Sbjct: 297 ASYLIDRALAYMAITINNVVSMYNPDSVILSGEFLDKFPEVYEEITDLCYSQYIWEPLQD 356 Query: 370 NLPVVRSEL-DHRSAIGA 386 + +VRSEL +H IG+ Sbjct: 357 SFSIVRSELHEHGVTIGS 374 >UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T9_PAESJ Length = 387 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 106/376 (28%), Positives = 193/376 (51%), Gaps = 14/376 (3%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G++ L+K++N++ V + + P+SR QI+E + L A+V+ + + LI+ L+ E+ Sbjct: 7 GDLTLIKKINTSIVLEAVLKQAPLSRAQISELTGLNKATVSNLVQDLIDSDLVVEIGPGE 66 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 S+GGR+ + ++ + +A+G+ LG + L DL V+AE L + + L Sbjct: 67 SSGGRKPVMLLFNGKAGYAVGIDLGVNYIRGVLADLEGNVIAERKRSLKKHQLEFTLKEL 126 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + I + I ++ I + +PG+VD D G I + P+++ + L + LEE+F++ Sbjct: 127 VQCIEELIGKAPASPYGIVGIGIGVPGIVD-DQGSILFAPNLEWRHVELQQMLEEQFQLP 185 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 + ++ + A E +G + I V V G G GII N ++ G G GE+GH+ Sbjct: 186 VTIDNEANAGAQGEQKYGIGRGIAHQIYVSVGIGIGTGIILNKELYKGATGFSGELGHLS 245 Query: 250 VEPLGERCHCGNFGCLETIAA-NAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 +E G+ C CGN GC E A+ NA +EQ PL +++ + AA G+ Sbjct: 246 IEYNGKPCRCGNEGCWELYASENALLEQ------------AAPLGFDSLEDLLDAAEAGN 293 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 + +G ++G I+ +N+FNP ++I ++ A L A++S + + L R Sbjct: 294 EEVRALFYKIGEYMGAGISNIVNVFNPDVVIIGNRMSRAKTWLEEAVQSSVTRRTLPYHR 353 Query: 369 TNLPVVRSELDHRSAI 384 L ++ +EL +SA+ Sbjct: 354 ERLRILFAELQDQSAV 369 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/337 (30%), Positives = 168/337 (49%), Gaps = 8/337 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 GN DL+K +N V LI + G I+R +IA++ +++T I L + G+I E + + Sbjct: 7 GNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILEGAETS 66 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 STGGRRA + + V++ L DL+++++ E+ +P +++ E A+ Sbjct: 67 STGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIM--ENTSIPFSSEKKPEEAI 124 Query: 130 LNAIAQFIDSY--QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF- 186 IA+ + R + L+ + + + GLV+ G + + EN L L F Sbjct: 125 -ELIAKNVKKMCENRDMNHLLGVGIAISGLVNRRKGTVIRSTMLGWENVALEAMLHAYFP 183 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + +V +I LAE + G + + V V G G ++ N +I+ G G GE G Sbjct: 184 DIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQGGAGEFG 243 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H ++P G +CHCG GCLE A+ R LK+ Y + L D + K+A Sbjct: 244 HTTIQPGGYKCHCGQKGCLEMYASEFYFRNRG-EELKEAYPTS-ELKDFHFDKVAKSARA 301 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE 343 GD +A+E++ +G +LG I IN FNP+K++I GE Sbjct: 302 GDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGE 338 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 104/318 (32%), Positives = 164/318 (51%), Gaps = 19/318 (5%) Query: 88 AIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQR----K 143 A+GV LG + L D KVL + P +++ +H ++N I ID+ K Sbjct: 4 AVGVDLGGTKINVLLVDDQGKVLGRDKQP--TESEKGKDH-VINKIKSMIDNVLNQAGLK 60 Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHIQVENWG----LVEALEERFKVTCFVGHDIRSL 199 + E+ I + PGL+D D Y P++ E W L + LEE F V ++ +D+ + Sbjct: 61 ITEIEGIGIGFPGLMDRDKKTTLYAPNLGDE-WKKEVLLGKELEETFNVPVYLENDVNLI 119 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 A AE GA + + I V + G G+GI+ NG+++IG +G GE GH V P G C C Sbjct: 120 AWAEWLVGAGRGTKTMICVALGTGIGSGIVLNGKLWIGAHGMAGEFGHTTVLPDGPVCGC 179 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVP------LDDCTIKTICKAANKGDSLASE 313 GN GC+E IA+ IE+ ++L Q S + LD+ T+K I +AA +GD LA + Sbjct: 180 GNRGCIEAIASGTGIEKYAKSILPQYPNSLIWELCNGNLDEVTVKIIYQAAERGDKLAVD 239 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 + Y G +LG +A +++ +P+KIVI G + + + ++ + L +FR + Sbjct: 240 IFNYAGYYLGIALANYVHIIDPEKIVIGGGVANVREYIGKPMKEEFYKRVLPSFRDKVTF 299 Query: 374 VRSEL-DHRSAIGAFALV 390 +EL + IGA LV Sbjct: 300 SWAELGEDAGGIGAALLV 317 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 182/378 (48%), Gaps = 8/378 (2%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 +D+ K +++ + Q G S ++A+ + S T I L+ G I E + Sbjct: 12 IDIRKNRIRSSLLLHLYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWITETGTGPAR 71 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GR + ++ + + + + RHD + +FDL ++++ + + L Sbjct: 72 AGRPPVLYGLNSKKYLTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDDSANFLEELFA 131 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSG-KIHYMPHIQVENWGLVEALEERFKVTC 190 + F+ S +L I V +PGL++ G + Y+ ++ LV L+E F + Sbjct: 132 STDDFLKSNNISHSKLWGIGVSMPGLINSSQGINLTYL-NLTPPGVPLVTYLKEHFDLPV 190 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 + +D ++ + EH FG + D + + + G G GII NG +F G +G GE+GHIQV Sbjct: 191 CLFNDTKATTIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGASGFAGELGHIQV 250 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP------LDDCTIKTICKAA 304 +P G CHCG GCL+TI + A+ ++ + G + + L+ I +A Sbjct: 251 KPDGMLCHCGKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLEQLETSHIIEAV 310 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 + GD + +++ VG LGK +A A++LFNP+ I++ G + EA + IE IN L Sbjct: 311 HAGDEFSIDLLSTVGTELGKGLATAVHLFNPEVIIVGGLLAEAGPFISNPIEQAINKYCL 370 Query: 365 KAFRTNLPVVRSELDHRS 382 F+ L + S+L ++ Sbjct: 371 SDFKNPLSIHISKLGSKA 388 >UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus licheniformis RepID=Q65DK2_BACLD Length = 387 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 184/384 (47%), Gaps = 14/384 (3%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 LVK++N A ++ I + GP+SR +++E + L A+V+ L+++ +I E S+GG Sbjct: 8 LVKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSLLQKDIIYETGPGESSGG 67 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 RR + + + +A+GV +G + + L DL ++ + L E Q E AL+ Sbjct: 68 RRPVMLKFNRKAGYAVGVDVGTNYIIVALTDLEGHLIEQFERTLDEEDIQATEEALIELT 127 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 +D L I V +PGLVD + + + P+ + + E LEERF V + Sbjct: 128 GLAVDKIPPSPFGLTGIGVCVPGLVDNER-HVVFTPNKPIHLIPIKEKLEERFGVPILIE 186 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 ++ + A+ E +G E ++ V ++ G G GI+ NG++F G G GE GH+ + Sbjct: 187 NEANAGAVGEKEYGEGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEAGHMSIHFD 246 Query: 254 GERCHCGNFGCLETIAANAAI-EQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G C CGN GC E A+ A+ N Q Y+ T+ + A++GD Sbjct: 247 GPLCRCGNRGCWELYASEKAVFSHYAANSGAQLYE-----------TVKELADRGDPGMM 295 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 E E G H+G + + NP I++ I E+ ++ AI+ I +++ +N Sbjct: 296 ETFERFGFHIGIGLLNILKTLNPDTIILRNTIVESYPSIVDAIKKTIASRSAAEALSNYH 355 Query: 373 VVRSELDHR-SAIGAFALVKRAML 395 + S L SA+G +LV L Sbjct: 356 LKISTLGRTASALGMSSLVTERFL 379 >UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU Length = 384 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 98/393 (24%), Positives = 200/393 (50%), Gaps = 12/393 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I + VK++N + + I + PISR +++E + L ++V+ L++ ++ E+ Q Sbjct: 3 IADQTFVKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTLMKESMVFEIGQG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGRR + +V + +++G+ +G L DL ++ +++ L + + + Sbjct: 63 QSSGGRRPVMLVFNKKAGYSVGIDVGVDYINGILTDLEGTIVLDQYRHLESNSPEITKDI 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L++ I FI + LI I + +PGL+D D KI + P+ + L +++E++ V Sbjct: 123 LIDMIHHFITQMPQSPYGLIGIGICVPGLIDKDQ-KIVFTPNSNWRDIDLKSSIQEKYNV 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ + A E FGA+++ ++ I V + G G G+I N ++ G +G GE+GH+ Sbjct: 182 PVFIENEANAGAYGEKVFGAAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGHM 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++ G +C CGN GC E A+ A+ + + Q + ++ D I A+ D Sbjct: 242 TIDFNGPKCSCGNRGCWELYASEKALLKSL-----QTKEKKLSYQD-----IINLAHLND 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 ++ G +LG + +N FNPQ +++ I E+ ++L ++ S ++++ Sbjct: 292 IGTLNALQNFGFYLGIGLTNILNTFNPQAVILRNSIIESHPMVLNSMRSEVSSRVYSQLG 351 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILL 400 + ++ S L + A+G ++V L+ I + Sbjct: 352 NSYELLPSSLGQNAPALGMSSIVIDHFLDMITM 384 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 98/385 (25%), Positives = 186/385 (48%), Gaps = 14/385 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 ++ GN+ L+++LN + + I + GPISR IA++ ++P +VT +LIE ++ E Sbjct: 1 MSRTGNLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSELIEGKIVYED 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 S GGR+ + + IGV + I +L KV + + + Sbjct: 61 GVGNSNGGRKPVLLRFNPDTHSIIGVSITNSKIKIAEMNLEGKVKKKSVEITNNEQGEDI 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 ++ + FI + + L +S+I PG+V+ + G I Y H+ + N L + +E Sbjct: 121 IKLVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNSHLGLYNIPLKKMVEST 180 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + F+ +D+ + AE YFG+ + + + G G+GI+ N I+ G G+ GEI Sbjct: 181 IGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAGEI 240 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLN-LLKQGYQSRVP------LDDCTIK 298 GH V P G +C CGN GC+E +I R+++ ++ +G + + T Sbjct: 241 GHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGNDFTKITPD 300 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 A + D L E+++ + +L TI AI+ +P+ I+++G I ++V + ++ Sbjct: 301 MFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSGAIIHGNQVFIDQLQEE 360 Query: 359 INTQALKAFRTNLPVVRSELDHRSA 383 + + LP++R +++ +S Sbjct: 361 VKKRL-------LPIIREDVNFQST 378 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 102/374 (27%), Positives = 194/374 (51%), Gaps = 14/374 (3%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV-DQQASTGG 73 +K+ N+A +++ + GP++R +IA +++L P++V+ IT LI + ++KEV + S G Sbjct: 9 LKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEVGSEDVSRVG 68 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 ++ I + +F IG +G + + + + +L + + + E+ + LL I Sbjct: 69 KKGILLDINYDDFLFIGYDVGSAYSRVIVSNGKGDILYSKRF-VSEKNDK-----LLKQI 122 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 + I + K +I I + PG +DP++G + +I + N+ + + +++ F + +V Sbjct: 123 YENIKMVKNKFN-IIGIGMAFPGYIDPENGVVIRSHNIDISNFEVKKVMKKEFNLPAYVD 181 Query: 194 HDIRSLALAEHYFGASQDCE-DSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 H+ ++ +A + + E D ++ + G G GI+SNG+I G GE+GH+ V P Sbjct: 182 HN--TIMMARNLISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGELGHVTVNP 239 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G +C+CG GCLET +++ AI + + + + C K + + A KGD A Sbjct: 240 EGRKCNCGKNGCLETESSSKAIVRNYEEISGKNLECE---GSCESKLVYELAKKGDENAI 296 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 + E G++LG IA +N+ NP+K+ IAG ++ + L + E N A + Sbjct: 297 KAFERAGKYLGIGIATLVNILNPEKVYIAGGVSNGWEFLKDSTEQSYNQHIFYANKDVTI 356 Query: 373 VVRSELDHRSAIGA 386 V S ++ +A GA Sbjct: 357 EVSSIGEYITACGA 370 >UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D7F4_PAESJ Length = 396 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 113/387 (29%), Positives = 189/387 (48%), Gaps = 24/387 (6%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N++ V+++N + V RL+ + SR ++ + S L +++T I +LI G++ E Sbjct: 11 NLEDVQEMNRSLVIRLMRRREVCSRAELTQDSGLNQSTITNIINELISWGIVVETGVIEG 70 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 GRR+I I + IG+RL R T+ L+DL + P+ T Sbjct: 71 KKGRRSIGIKLNCEPYKIIGIRLARKSITVALYDLGGSEYKRQQIPINMADGST---NAF 127 Query: 131 NAIAQFI-DSYQRK-LRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFK 187 N + + I D Q + +IAI V+ PG + D G+I M + E + E L + F+ Sbjct: 128 NRMKELIRDMMQSNAVGNVIAIGVVTPGPLLRDEGRIGLMTYFPGWEKINIQEELMQEFE 187 Query: 188 VTCFVGHDIRSLALAEHYFGAS-QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + ++ HD ++ ALA +FG Q+ I V +G GAGI+ G++F G G GEIG Sbjct: 188 LPVYMEHDAKAGALAHWWFGTPLQEQGVMIYVAAGQGVGAGIVIEGKVFRGSLGMAGEIG 247 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC---KA 303 H+ ++ G++C CGN GCLE + +A+ L LK+ + S +K+I K Sbjct: 248 HMSIDYKGQQCECGNRGCLELYCSTSAL----LQTLKKEHAS--------LKSIWQELKE 295 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 G++ E + +LG + IN FNP +I++ E+ EA +LL ++S I Sbjct: 296 VKSGET--REAVRQAAWYLGFGLVNIINTFNPDRIILGDEMAEAGDLLLDTVKSVIKEHV 353 Query: 364 LKAFRTNLPVVRSELDHRSAIGAFALV 390 L + L + + D + + A+V Sbjct: 354 LPDVYSQLTIELASDDMDTMLVGSAIV 380 >UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP1_ALIAD Length = 409 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 112/380 (29%), Positives = 181/380 (47%), Gaps = 13/380 (3%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 L+K++N + V I + PISR QI+ ++ L A+V+ +T +LI GL+ EV Q S G Sbjct: 20 LMKEINKSIVLNRIRFHSPISRSQISSETGLNKATVSALTDELIRDGLVLEVGQGRSRVG 79 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQQTLEHALLN 131 RR I ++ IGV LG + + D +++ L+ PLP ++ LE L Sbjct: 80 RRPIMLLFNASAGSVIGVELGVEYVRVAITDFAARALSVREEPLPRNLGAEEVLER-LRA 138 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 +IAQ + +I I V +PGLVD G + PHI+ EN L +E F Sbjct: 139 SIAQALAEAPESRYGVIGIGVGVPGLVDFARGVVLRAPHIKWENIPLKAMMESWFGKPVL 198 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V ++ + AL E +GA+ + + G G GI+ + G +G GE GH+ ++ Sbjct: 199 VDNEANAGALGEKLYGAATHVSSLVYISAGTGIGTGIVIGDELIRGADGVAGEFGHMSID 258 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 GE C CGN GC E A+ A L Y +++ ++ + D A Sbjct: 259 LHGETCPCGNVGCWELYASERA--------LVAAY-AKLTGEELDFDGVLARFRASDPAA 309 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + + VGR+LG +N NP +++ + E +++ A++ I ++ L + + Sbjct: 310 LQAFQTVGRYLGAGAVNLVNGLNPAMMILGNRLAEGGRMVTDAMQQAILSRCLVSSYAKV 369 Query: 372 PVVRSELDHRS-AIGAFALV 390 V S L + AIG+ ALV Sbjct: 370 VVQVSALGRDACAIGSAALV 389 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/388 (26%), Positives = 191/388 (49%), Gaps = 9/388 (2%) Query: 15 VKQLNSAAVYRLIDQY---GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 +++LN YR++++ +SR +A++ +L A+++K ++L+ + +I E ST Sbjct: 9 IRKLNRTD-YRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHATLEST 67 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GGR S++ IGV LG I L+ +++ +TQ+ + L Sbjct: 68 GGRPRKSLIVNKEYKKIIGVNLGAGFINIVASHLNGEIIQIRQRKFVYKTQEKVLDLLYE 127 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 I+ ++ + + +I I + GLVD G + + PH + + + LE +F + Sbjct: 128 GISDMVEKFGEE--SIIGIGLATHGLVDRKKGTVIFSPHFKWKKLDIRRELERKFNLKVI 185 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV- 250 V +D+R++ AEH +G + + ++ +L+ + G GA I NG+IF G N + GE+GH V Sbjct: 186 VENDVRAMLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGHFIVN 245 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 E +C CG FGCLET + A+ +V+ L++ ++ + TI I + + Sbjct: 246 EKSTIQCRCGKFGCLETECSEQALINKVVWELEKKDKNESK-EKITIDKIYSRSKHKEEP 304 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 +++ GK I +N+ + +V+AG+I +K+ + ++ L+ F Sbjct: 305 YYSIVKEAAYETGKVIGNILNILDIDNVVVAGDIIMTEKLYMNNFRKGVDRMILEDFNKK 364 Query: 371 LPVVRSELDHRSAI-GAFALVKRAMLNG 397 + +V S LD I GA +LV + G Sbjct: 365 VKIVSSALDDMIGIYGAISLVTSNLFVG 392 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 154 bits (388), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 102/374 (27%), Positives = 190/374 (50%), Gaps = 13/374 (3%) Query: 31 GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIG 90 G + ++ ++ ++ ++TK+ ++L++ ++ ++ + + GGRR + + G Sbjct: 38 GECTLSELTKELHISVPTITKLVQELVQENIVSDLGKVETPGGRRPNVFGLASSAIYFAG 97 Query: 91 VRLGRHDATITLFDLSSKVLAEE---HYPLPERTQQTLEHALLNAIAQFIDSYQRKLREL 147 V +GR + + + DL + ++ EE + L +R Q LE N IA FID+ + ++ Sbjct: 98 VNIGRDNMSFLITDLHNNIVKEELLTDFELQDRPQ-CLEKICSN-IAHFIDTCGVERAKI 155 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 + + V + G V+P +G+ + + L + +E+R + + +D ++ AE+ Sbjct: 156 LGVGVSVSGRVNPTTGRSY--RYFTSSEQSLRDMIEQRIGIRVLLENDSQARCYAEYTNS 213 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 S+D D + + + RG GI+ NG+++ G++G GE GHI C CG GCLET Sbjct: 214 KSKDEMDVLYLHLGRGLAIGIVMNGKLYYGKSGFAGEFGHIPFFDNEIICSCGKKGCLET 273 Query: 268 IAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKGDSLASEVIEYVGRHL 322 + AIEQ+ L+ QG + + + + I AA D+L+ E+IE VG Sbjct: 274 EVSGIAIEQKFGRLISQGVNTILREKYNKHEAIHVDEIIDAAKHDDNLSIELIEEVGEKA 333 Query: 323 GKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHR- 381 GK +A IN FNP+ +++ GE+ EA L+ ++S N +L + S++ Sbjct: 334 GKAVAFLINTFNPETVIVGGELAEAGDYLMLPLKSATNKYSLNLVYKDTKFRLSKMGKTA 393 Query: 382 SAIGAFALVKRAML 395 SA GA L++ +L Sbjct: 394 SAWGAAMLIRNQVL 407 >UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC4091 Length = 384 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 183/350 (52%), Gaps = 15/350 (4%) Query: 33 ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI-VTETRNFHAIGV 91 ISRI +A+ Q P +V I +L+++ I+EV+ +ASTGGR+A + + E + +G+ Sbjct: 19 ISRISLAKLLQWNPTTVGSIVAELLKKSYIQEVEMEASTGGRKATLLSLKEDMSPSILGI 78 Query: 92 RLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAIS 151 I + + K+ E L + + L Q ID K +E+ IS Sbjct: 79 SFAPSFLQIGIGSIQGKIFETEKIVLTPLIIEKIWQFLF----QIIDKKLNKWKEIRQIS 134 Query: 152 VILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQD 211 VI+ GLV+ + G + PH Q N + + LEER++ FV +D+R++AL E FG+ + Sbjct: 135 VIISGLVNSEKGVSIFSPHYQWRNIEIKKILEERYQKKVFVENDVRAMALLEKSFGSCKK 194 Query: 212 CEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG-ERCHCGNFGCLETIAA 270 + +++ + G G+ I + +++IG GE+GH+QV G RC CG GCLE+ + Sbjct: 195 KRNFVVLNIGDGVGSSIFIDNKLYIGSYSGSGELGHMQVNAKGLRRCSCGKIGCLESEVS 254 Query: 271 NAAIEQRVLNLLKQGYQS----RVPLD-DCTIKTICKAANKGDSLASEVIEYVGRHLGKT 325 N +I ++ + +K G S ++ D + +I+ A + D LA ++ E + + Sbjct: 255 NLSILDKISSQIKLGQYSILRQKLKRDGNLSIEDFLFALGEKDLLALQIAEESVEMITRA 314 Query: 326 IAIAINLFNPQKIVIAGEITEADKV---LLPAIES-CINTQALKAFRTNL 371 + I+L NP+++++ G I +++ + +L I+S I+ Q K +N Sbjct: 315 LDAIISLLNPERVILYGSIFQSEYLYREILKKIQSILISEQGYKISLSNF 364 >UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKJ0_BACSK Length = 391 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 176/373 (47%), Gaps = 11/373 (2%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 + +K +N + V+RLI ++ PISR IA++S L A+V+ + QLIE + E+ S+G Sbjct: 7 ETMKDMNKSTVFRLIQRHAPISRADIAKRSGLNKATVSALVAQLIENQFVYEIGTGDSSG 66 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ + + R HAI V +G + + DLS K +A+ L + + Sbjct: 67 GRKPVLLYCNDRASHAISVDIGVNGLLGIITDLSGKTIAKREMALTSKEFNIVLANTEAI 126 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I Q I + I+ +PG+VD G I P++ EN + ALE FK+ V Sbjct: 127 IEQLIHEAPPSPYGICGITASVPGIVD-SKGNILLAPNLGWENVDIKTALEHTFKLPVVV 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 ++ + AL E +G + + V G G G I +G++F G NG GE GH+ ++ Sbjct: 186 INEANAGALGEKQYGVGKPYSAISYISVSIGIGTGQIIDGKLFTGANGFAGEFGHMSIDR 245 Query: 253 LGERCHCGNFGCLETIAANAA-IEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 G++C CGN GC E ++ A +E +N+ ++ + + + AA G+ A Sbjct: 246 HGKQCRCGNQGCWELYSSEKALLEIAAINMNRR---------SISFEEVLAAAETGNQAA 296 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + VG LG + I+ NP+ I+I + + IE + ++ + Sbjct: 297 LDAFATVGHSLGIGLVSMIHSMNPEAIIIGNRFAKLKPYIQIPIEETLAKHLPSYYQKAV 356 Query: 372 PVVRSELDHRSAI 384 ++ SEL + + Sbjct: 357 KLLFSELGQEAPL 369 >UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG91_9CLOT Length = 403 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/390 (29%), Positives = 193/390 (49%), Gaps = 25/390 (6%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N + ++ +N + L+ + G +R +A SQL A+VT I I+ GL+KEV Sbjct: 9 NQENIQDMNRTLLLNLLRKEGICARAHLANLSQLKQATVTNIVSDFIDWGLVKEVGFLVG 68 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL----PERTQQTLE 126 GRR+I I +F + +RL R + T+ +F+LS ++L ++ L P R T E Sbjct: 69 NKGRRSIGISINNDDFGVLAIRLARKNYTVGIFNLSGRLLDKKRVELDVNQPPRV--TFE 126 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV---EALE 183 A+++ + I S + R++IAI + +PG G+I M V W + E L+ Sbjct: 127 -AIIHEAGELIRSSES--RKIIAIGMAIPGPYSEKRGRIELMTG--VLGWNEIPIQEKLQ 181 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVR--VHRGTGAGIISNGRIFIGRNGN 241 + FK+ F+ D + ALA+ Y+ +D ++ ++V V +G GAGII+NG + G G Sbjct: 182 DIFKIPVFLEQDANAGALAQ-YWHNDEDYKNGVVVYIAVGQGVGAGIINNGELLKGCIGV 240 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GE+GH + G RC CGN+GCLE ++ A + V +L+ P + + + Sbjct: 241 AGEVGHTSICYNGPRCACGNYGCLENYCSSIAFTKEVNRVLR-------PEIEYNFRQVS 293 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCIN 360 + GD + +++ L I IN FNP IVI E++ V+L ++S + Sbjct: 294 QLLRDGDQVVTDIFLDACDKLSVGIVNIINSFNPSVIVIGDEMSHILPSVMLERVKSNVK 353 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALV 390 + L N+ + S + + S A+V Sbjct: 354 ERVLPEIYANMNITMSVVSNDSMAHGAAIV 383 >UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n=3 Tax=Bacillaceae RepID=Q8ELU2_OCEIH Length = 400 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/384 (29%), Positives = 191/384 (49%), Gaps = 9/384 (2%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 +VKQ N + V+ I Q PISR IA+Q L ++V+ + +LI LI EV S+GG Sbjct: 11 VVKQENKSLVFNTIRQNSPISRADIAQQLGLNKSTVSSLVSELINEELIGEVGPGESSGG 70 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 RR + + ++IG+ LG + L DL +L +E T + + L I Sbjct: 71 RRPVMLFFNNTAGYSIGIDLGVNYILGVLTDLQGNILEQEQVTFDNLTYEEILVHLNEVI 130 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 + I + +I I V +PG+V+ + KI P++ N L E LE +F + + Sbjct: 131 QKLITMTSKSPYGVIGIGVAVPGIVNKEE-KILLAPNLNWRNISLKEELENQFNIPVIIE 189 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 ++ + A E FG ++ ++ + V V G G G++ N +++ G NG GE+GH+ ++ Sbjct: 190 NEANAGAYGEVQFGIGKENKEIVYVSVGVGIGVGLVLNNQLYKGNNGFSGEMGHMTIDAH 249 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQG-YQSRVPLDDCTIKTICKAANKGDSLAS 312 G +C CG+ GC E A+ E+ +L L K+ + P D + + + A DS+A Sbjct: 250 GAKCSCGSEGCWELYAS----EKALLQLAKRNKIYTTDPYD--LLDHMIQLAKNNDSVAL 303 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 E + ++L I IN FNP++++I ++ A K + + IN Q+L + +L Sbjct: 304 EAFNEISKYLAIGINNIINSFNPEQVIIGNRMSAAKKWIEKPLLDSINNQSLWFSQKDLK 363 Query: 373 VVRSELD-HRSAIGAFALVKRAML 395 + S L+ H +A+G A L Sbjct: 364 IDFSSLNTHSNALGMAAFSSERFL 387 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 13/311 (4%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI------AQFIDSY 140 + IGV LG L D ++ + Y LP + ++ ++ L N I F Sbjct: 5 YVIGVDLGGTKIAAALVDFKGTIICK--YTLPTKAEEGEKYILDNIIKIIEKVVNFGGVC 62 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLA 200 +K++ I + PG +D D GKI P++ +N+ +V L+ FK+ F+ +D + A Sbjct: 63 SKKIK---CIGLGAPGPLDIDKGKIICTPNLPFKNFNIVSPLKNHFKMPIFLDNDGNAAA 119 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCG 260 +AEH FGA + + + + V G G G I NG+I+ G N EIGH+ ++ G C+CG Sbjct: 120 IAEHMFGAGKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCNCG 179 Query: 261 NFGCLETIAANAAIEQRVLNLLKQGYQSRVPL-DDCTIKTICKAANKGDSLASEVIEYVG 319 NFGC E +A+ AI + +K GY + + L + T K + K A GDS++ +++ Sbjct: 180 NFGCAEVMASGTAIAREAKKAVKMGYNTTLALYKNITSKEVFKEAQLGDSISQNILDTTL 239 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 +LG +A I +P+ ++I G +++ K++ I + + N ++ + L Sbjct: 240 NYLGICVANIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCFGTVSKNTRILPALLG 299 Query: 380 HRSA-IGAFAL 389 + IGA AL Sbjct: 300 TDAGVIGAAAL 310 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 109/383 (28%), Positives = 192/383 (50%), Gaps = 20/383 (5%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 ++G+ +L++++NS+ V + + G +SR ++A+++ L+ +V++I +LI G+++E + Sbjct: 5 RVGSKELIREINSSLVLGEL-RGGLVSRTELAKRTGLSLPTVSEIVGELIGTGVVEEREI 63 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 +S GGRR + + + + IG++L L DL++ ++ + T+ Sbjct: 64 ASSGGGRRPVLLGLKPDAGYVIGIKLTETRVVAVLTDLNAAIVQRATVAVANDDVDTVVR 123 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + + +F K+ + + V L G++D SG + + + + L LE+R Sbjct: 124 TVAAVVKRF----TAKVGPVYGVGVGLAGMIDRASGVVRHATYSDWHDVDLAALLEKRTG 179 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + V +D+ +L E +FGA + D +V + RG G G++ +GR++ G G GE GH Sbjct: 180 LPVVVDNDVNTLVANEQWFGAGRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGGAGEFGH 239 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 +V P G C CG GCLE++ AI L G S I+ A G Sbjct: 240 TKVAPDGPVCACGARGCLESLIGEPAI------LTATGTSS--------IEQAVDLARGG 285 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D A V ++VGR LG + +NL NP+ IV+AGE T A +LLP ++ + Sbjct: 286 DDAARAVFDHVGRTLGTAVGNLVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQAVFDGL 345 Query: 368 RTNLPVVRSELDHRS-AIGAFAL 389 + +L VV + D + A GA L Sbjct: 346 QRDLEVVVDDWDDEAWAQGAAGL 368 >UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID=A8FE34_BACP2 Length = 386 Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 109/388 (28%), Positives = 192/388 (49%), Gaps = 12/388 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I + + VK++N + + I Q+ PISR +++E++ L ++V+ L++ L+ E+ Q Sbjct: 3 IADQNFVKKINQKLLLKEILQHAPISRAKLSERTGLNKSTVSSQVSTLMKEQLVYEIGQG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGRR + ++ R +IG+ +G L DL +L EE LP Sbjct: 63 ESSGGRRPVLLMFNKRAGCSIGIDVGVDYVNGILTDLEGSILHEEQINLPSSAPDVTIRI 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L I Q + LI I + +PGLVD D +I + PH + +N L +AL++ F+V Sbjct: 123 LTELIQQLMSQIPSSPYGLIGIGLCIPGLVDADQ-QIVFTPHSKWKNVDLKKALQDAFQV 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ + A E FGA++ + I + G G GII N ++ G G GE+GH+ Sbjct: 182 PVFIENEANAGAYGEKIFGAAKHYDHLIYASIGTGIGIGIIINHHLYRGAYGFSGEMGHM 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++ G C CGN GC E A+ A+ Q + Q + + D + + A D Sbjct: 242 TIDFNGPTCSCGNRGCWELYASEKALFQSL-----QTNEKPISHQD-----VEQLATLND 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 + G +LG + ++ FNPQ I++ ++ E+ +L I+ ++++ F Sbjct: 292 MKTLNALRNFGFYLGVGLTNVLHTFNPQAIILRNKVIESQPTVLRVIQEEVSSRIDTQFS 351 Query: 369 TNLPVVRSELDHRSAI-GAFALVKRAML 395 +++ ++ S L H + + G +LV A L Sbjct: 352 SHVELLPSSLGHNAPVLGMTSLVIEAFL 379 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 107/384 (27%), Positives = 185/384 (48%), Gaps = 15/384 (3%) Query: 11 NVDL--VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 NVD ++++N A V +LI SRI I++ + L A+V+ I +LI L+ EV Sbjct: 4 NVDASAMRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEVGYG 63 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 +S+GGR+ I + +AIGV + T + ++ + + + L + Sbjct: 64 SSSGGRKPILLRFNANAAYAIGVDVQLSHMTTVVCNIRGEPVYRQVRTLGLSEAPDVRAV 123 Query: 129 LLNAIAQ----FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 LL AI + I + L+ + PG+VD G ++Y+P + V W ++ L Sbjct: 124 LLEAIEEELRKAIAAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSLFVGEWEILADLGR 183 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + F+ +D A E Y + ++ + V + G GAGI+ G+++ GR+G GE Sbjct: 184 SVDIPLFLDNDANCGAWNE-YMAQAMKLKNLVFVNMGLGIGAGIVIEGKLYRGRDGIAGE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ--SRVPLDDCTIKTICK 302 GH+ + P+G C CG +GC E A+ E+ ++ L++ S + L D ++ + Sbjct: 243 AGHMTINPMGSACMCGGYGCWEEYAS----ERGLMRYLREAGADLSALSLRDSLLEQALE 298 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A + +G++LG IA +NL NP ++++ G + A +LP +E I + Sbjct: 299 QAQNDNRACIRAFHSLGQYLGLGIANLLNLLNPDEVILGGSVARAATFVLPEVERVIKHR 358 Query: 363 ALKAFRTNLPVVRSELDHRSAIGA 386 AL + +P VR H AIGA Sbjct: 359 ALLQNK-QIP-VRVGSQHAVAIGA 380 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 193/387 (49%), Gaps = 23/387 (5%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 N ++ I + I+R IA++ L+ +V IT LI++G+I + + S+GG+R Sbjct: 16 NRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIYVIGKGKSSGGKRPEL 75 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQF-- 136 + F +GV +GR + + + V+ Y + + T+ L+N I + Sbjct: 76 LAVVPDRFFFVGVDVGRTSVRVVVMNNCRDVV----YKVSKPTESVEPDELINQITEMTM 131 Query: 137 --IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 I+ + L ++ I V +PGL++ +G++ + P+ N L + L++ V + Sbjct: 132 ESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNFGWNNIALQDELKKHLPFNVLVEN 191 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAG---IISNGRIFIGRNGNVGEIGHIQVE 251 R+L + E +Q S +V V+ G G G ++ NG ++ G +G GEIGHI VE Sbjct: 192 ANRALVIGE--IKNTQPNPTSCIVGVNLGYGIGSAIVLPNG-LYYGVSGTSGEIGHIIVE 248 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAAN 305 G C CGN+GC+E+IA+ AI + + QS V L K + AA Sbjct: 249 NHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKIDAKMVFDAAK 308 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +GD LA ++E ++GK +AI IN+ +P++I++ G +T + + I+ ++ ++ Sbjct: 309 EGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMIKKAVSKYQMR 368 Query: 366 AFRTNLPVV--RSELDHRSAIGAFALV 390 N+ +V +S L + +AIG +V Sbjct: 369 YAGGNVKIVVGKSGL-YATAIGGAWIV 394 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 101/384 (26%), Positives = 193/384 (50%), Gaps = 3/384 (0%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + GN L+K++N ++ LI +S+ +A+ + L+P + I L+++G I+E Sbjct: 3 MGKAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIREA 62 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQT 124 S GGRR I ++ +IGV + L D++ +V ++ R Sbjct: 63 GIGTSKGGRRPILYELTPGSYFSIGVDIDIDYIRFILMDITGQVEFKDRISCDFARAASE 122 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + I++ I + + L+ + V +PG++D + +I + P++ E L ++ Sbjct: 123 SIRLMEEKISEIIKIHNIEHDRLLGVGVSVPGMIDNLTHEIIFAPNLGWERVNLEHMMDR 182 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 +V ++ AL E++ G D D + + + G G+ I + G ++ G G+ GE Sbjct: 183 IGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRGCCGSAGE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIKTICKA 303 IGHI V+ G RC CGN+GCLE + + ++ ++ L++QG + ++ T+ I + Sbjct: 243 IGHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAITVDEIFRL 302 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A +G+ A ++ +LG IA IN NP KIV+ E+ + + ++ ++S + +A Sbjct: 303 AREGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSEDIVDHLKSIASAKA 362 Query: 364 LKAFRTNLPVVRSEL-DHRSAIGA 386 LK + + VV S++ + SA+GA Sbjct: 363 LKYPASRVQVVVSKIGEDTSALGA 386 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 112/388 (28%), Positives = 187/388 (48%), Gaps = 26/388 (6%) Query: 34 SRIQIAEQSQL---APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETR-NFHAI 89 S IAE S L + S++KI +L+E L+ E STGGRRAI + N + + Sbjct: 22 STYTIAELSGLTNKSIPSISKIVNELLEDKLLIEDGLAPSTGGRRAIHYALNAKLNCYIL 81 Query: 90 GVRLGRHDATITLFDLSSKVLA-----EEHYPLPERTQQTLEHALLNAIAQFIDSYQRKL 144 V + +H ++ ++DL +K + E H PE + ++ I + + + Sbjct: 82 TVAIDQHYTSVIVYDLHNKEVTPVHTIENHLDHPEEAFSNI----VSLINELLTKHHLSA 137 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 ++ I V +PG VD SG Q+ N + + E F + F+ +D ++A+AE Sbjct: 138 DNILGIGVSMPGFVDNVSGTNGSFKDFQLFN--IKKEFERVFAIPTFIENDSTAIAIAEQ 195 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 FG +++ ++++ V G G GII + ++F G +G GE HI + + C CG GC Sbjct: 196 NFGKAKEISHALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGC 255 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDC-----TIKTICKAANKGDSLASEVIEYVG 319 LE A+ +A + L G +S + +D + + AA GD LA + Sbjct: 256 LEVEASLSAAVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSA 315 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 LGK IA I++ NPQKI+I+G EA K+L+P I++ I+ + + S++ Sbjct: 316 YMLGKGIATLIHIMNPQKIIISGRGAEAGKILMPQIQTAIHEFCIPKISNKTVLEISDMK 375 Query: 380 HRSAIGA------FALVKRAMLNGILLQ 401 + IG ++L K A LN L++ Sbjct: 376 NAQLIGTASIVFEYSLTKFANLNKSLIK 403 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/347 (30%), Positives = 176/347 (50%), Gaps = 12/347 (3%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 D++K N V R I Q G +SR I++++ L+ AS+T IT +L+E LIKE S G Sbjct: 6 DILKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRLLEANLIKENRYGKSKG 65 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GRR + + ++ AIGV++G + DL + E+ PL + +A++ Sbjct: 66 GRRPVLLGINEKHSWAIGVKVGYLYLYFVVTDLLGTPVLEQKIPLNTASY----NAVVEK 121 Query: 133 IAQFIDSY----QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 IA F+++ + R+ + I V + G VD + G + ++ N + LEER K Sbjct: 122 IADFVNTIVKIPEYVDRKFLGIGVAVSGSVDSEHGIVKSSYILEWGNVPIGPVLEERIKA 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V +D+ S A+A + G ++ ++ I + + G G +I G+++ GR G GEIGH+ Sbjct: 182 PVLVYNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGKLYTGR-GGAGEIGHM 240 Query: 249 QVEPLGERCHCGNFGCLET-IAANAAIE--QRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 V G++C CG++GCLE I+ NA ++ ++ N+ +S + +D I I KA Sbjct: 241 TVICDGKKCSCGSYGCLEAEISFNALVDRIKKKTNIESLKNRSCLTTEDEAIHYIHKALQ 300 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLL 352 E + + LG I IN+F P ++I GE E + L Sbjct: 301 IDREAVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFL 347 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/389 (26%), Positives = 188/389 (48%), Gaps = 9/389 (2%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +K N V I + G ++ +A + L ++ KI +L E LI++ ++ GR Sbjct: 10 LKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLIRDGQMESGGMGR 69 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQQTLEHALLNA 132 +A+S V + IG+ + + I L +L ++LA E Y + + Q L A Sbjct: 70 KAVSYVINENYRYTIGIHINKFITGIALLNLRGQILAIERYSMDKEFENQNDFVTMLAEA 129 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW-GLVEALEERFKVTCF 191 + I+ K +++ I V PG +D +SG I P++ + ++ L E LE R F Sbjct: 130 VELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPLKETLEGRTGFPVF 189 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 + D +A AE+++ ++DC + V V G G+G+I +G++ +G N GE GHI ++ Sbjct: 190 LNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGANCIAGEFGHITID 249 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL----DDCTIKTICKAANKG 307 G C+CGN GCLE +++ A+ + + L+ Q PL + TI+ + + +K Sbjct: 250 INGPLCNCGNRGCLEAMSSGIAVLRMLGEQLEN--QKDHPLYHKRNALTIEDVFEMTDKK 307 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D L ++ ++G ++ IN F+P+ I++ G + + + ++ N + +K Sbjct: 308 DLLTISILNRSAFYVGVAVSNLINTFDPEMIILGGILIQKYPMYFNIVQDVANQRKVKGA 367 Query: 368 RTNLPVVRSELDHRSAIGAFALVKRAMLN 396 + N V ++ IGA +V N Sbjct: 368 KENYMAVSVLGENAGVIGAGEIVTDHFFN 396 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 192/397 (48%), Gaps = 17/397 (4%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-QQASTGG 73 VK LN + L+ YG +++ +IA + L +V +T +L++ LI E S+ G Sbjct: 12 VKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIAEAGFYDESSRG 71 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ-TLEHALLNA 132 R+ + + + + +GV + + +L K + +++ P + + ++ + +++ Sbjct: 72 RKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNANRGSVVNVIIST 131 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI----QVENWGLVEALEERFKV 188 I +D K R +I I V PG +DP GKI P++ QV GL+E E ++ Sbjct: 132 IQAVLDESGLKSR-IIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKGLIE---ENTEL 187 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + D +AL E ++G + + V G G+G+I N +I+ G GEIGH Sbjct: 188 PTQIEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPFGAGEIGHC 247 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQG----YQSRVPLDD--CTIKTICK 302 ++ G RC+CGN GCLE IA+ AI +RV L++G QS +D I + Sbjct: 248 TIDIDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHGLDITDVIT 307 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A GD LA+ ++ R++G ++A INL P+ I+I G + + + Sbjct: 308 AGVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYFTYVRETSYNR 367 Query: 363 ALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAMLNGI 398 +L +F + + SEL ++ IGA +V LN I Sbjct: 368 SLSSFHDKIMLQPSELGEYAGVIGAGTIVFEKYLNEI 404 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 180/372 (48%), Gaps = 14/372 (3%) Query: 37 QIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRH 96 + ++ + +VTK+ +LIE G++ + + + GGRR + + IGV + + Sbjct: 36 DLGKELNFSVPTVTKMVGELIEDGIVMDFGKMETPGGRRPNIYGLNQSSGYFIGVDISQK 95 Query: 97 DATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKL----RELIAISV 152 I L + ++ E+ + ++ H + + I+ + ++++I + Sbjct: 96 RVHIGLINFKGDLIDEQ---MDISFEEAHPHERFERLCEIIEDFMSHTVVPKDKILSIGI 152 Query: 153 ILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDC 212 + G V+P +G H + L E EE+ + + +D R++A E+ G Q Sbjct: 153 NISGRVNPQTG--HSYSFFYFDERPLTEMFEEKLGIDVSIDNDSRAMAYGEYIKGRVQAE 210 Query: 213 EDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANA 272 ++ I V V G G G+I NG+++ G++G GE GHI CHCG GCLET A+ + Sbjct: 211 KNIIYVNVGWGLGLGVIVNGQLYYGKSGFSGEFGHITAFENEILCHCGKKGCLETEASGS 270 Query: 273 AIEQRVLNLLKQG-----YQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIA 327 A+ ++ L L G Q + D+ T+ I A + D LA E+IE VG LGK +A Sbjct: 271 ALYRKFLEKLHNGQSSLLTQQKENEDEITLNDIIDVALQEDILAIELIEEVGNTLGKHVA 330 Query: 328 IAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAF 387 INLFNP+ ++I G + A L+ + S I +L + + S+L ++ + Sbjct: 331 GLINLFNPELVIIGGTLANAGDYLILPLRSAIKKYSLNLVNKDSSIKVSKLGDKAGLLGA 390 Query: 388 ALVKRAMLNGIL 399 +L+ R+ G++ Sbjct: 391 SLLARSKFIGLI 402 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 110/388 (28%), Positives = 193/388 (49%), Gaps = 10/388 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ L+K++N V I Q P+SR I+ L A+V+ + +LI+ L+ E+ Sbjct: 5 GDQQLIKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEIGPGE 64 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 S+GGR+ ++ +AIG+ + +D L DL VL E+ PL + + + + + Sbjct: 65 SSGGRKPTLLLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQEKLVPLSDFSPEHVLEQI 124 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 I QF + ++ I + +PGLVD D ++ P++ L E L F Sbjct: 125 RQTIRQFKEQLPESPYGIVGIGIGVPGLVD-DKSRVISAPNLDWNKVELYEPLASEFGAN 183 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 + ++ + A+ E FGA ++ ++ I + + G G+GII G ++ G + GE+GH+ Sbjct: 184 LHIDNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYRGTSNFSGEVGHMT 243 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + G C CGN GC ET+A+ A+ R L + + P ++ + + A+ GDS Sbjct: 244 IAENGPLCRCGNRGCWETLASEKALLDRAAKL----WGDKHP----DLEEMIQLAHSGDS 295 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A E++ +G LG +A +N+ NP+ IVI ++ A ++ A+ I ++L R Sbjct: 296 RAIELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDAMLRTIENRSLSYHRK 355 Query: 370 NLPVVRSELDHRS-AIGAFALVKRAMLN 396 V + L RS A+GA ++ A L+ Sbjct: 356 KSGVAFANLGIRSTALGAASMPITAFLS 383 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 104/399 (26%), Positives = 198/399 (49%), Gaps = 12/399 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI-KEVD 66 Q G+ +L++ +N V I ++ P+SR I +++ L+ +V+ + L++ GLI +E D Sbjct: 2 QTGDTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESD 61 Query: 67 QQASTGGR-RAISIVTETRNF-HAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQ 123 + ++G R R +++ N + +G +L H + + +L + LA PL P + Sbjct: 62 ETTNSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVP 121 Query: 124 TLEHALLN-AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW--GLVE 180 ALL+ + + KL ++ + + LPG +D +G H+ P + E L + Sbjct: 122 DAIVALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVALAD 181 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 + R + + +D L LAE +FG Q+ ++ ++V + G G G+ +G ++ G++G Sbjct: 182 MVRRRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQHG 241 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD----DCT 296 E GH +++ G RC CG +GC+E A+ AI + +++ D + Sbjct: 242 MGTEFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAHEGADDTAEAETR 301 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 + T+ + A +G+ ++ G LG IA IN+ +P KIVI+G T A ++ PA+ Sbjct: 302 VATVVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISGSGTRAVDLIEPALR 361 Query: 357 SCINTQALKAFRTNLPVV-RSELDHRSAIGAFALVKRAM 394 + + L + ++ + D A GA +LV +A+ Sbjct: 362 AAVAANTLAVLQNRCEIIFHDQGDEVWARGAASLVLQAL 400 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 101/355 (28%), Positives = 173/355 (48%), Gaps = 25/355 (7%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA-- 76 N V++ I G ISR+ +A + L P +V+ L+E L++EV S GG+ A Sbjct: 17 NYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELVQEVGLAPSGGGKPATL 76 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE---HALLNAI 133 +S++ + R H IG+ + H+ T+ +L + R +QTL +L + Sbjct: 77 LSVLDDGR--HLIGLDVAGHELRGTIINLRGAI----------RQRQTLALNGGNVLEQL 124 Query: 134 AQFIDSYQRKLRE-LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 Q ID ++ I + PG+++ +G + ++ N L + L +R+ + ++ Sbjct: 125 YQLIDQLLANTHSPVLGIGIGAPGVINTTAGVVQQAVNLGWHNLALRDLLGKRYGLPVYL 184 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D A+AEH FG+ ++ + +++ V RG GAGI NGRI G GEIGH+ V+P Sbjct: 185 ANDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAWGAGEIGHVVVQP 244 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G C CG++GCLET+A+ +A LL + ++ TI + A D Sbjct: 245 HGTLCRCGHYGCLETVASTSA-------LLTKLDATQPQSQPWTIAEVQAALAANDPTVR 297 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 +++ +LG IA + L N Q I++AG + + LL + + AL+ Sbjct: 298 ALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRRSLAQHALQTL 352 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 182/386 (47%), Gaps = 24/386 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 V+ N AAV + P SR IA + L A+VT I +LI + L +E +Q + GR Sbjct: 25 VRATNLAAVLGFLRANAPCSRAAIASGTGLNKATVTSIVGELIAQRLARETEQTQNHVGR 84 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY--PLPERTQQTLEHALLNA 132 A +V + + AIG+ +G T +D + L H P PE + AL Sbjct: 85 PATLLVLDGSAYAAIGMEVGVRGLTAIAYDSAGGQLLRWHRSGPGPEASPAKTIAALAAL 144 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW-------GLVEALEER 185 + I + R+++ ++V PGL+D D G + + W L+ AL R Sbjct: 145 ARRAISAVHSSGRDVLGLTVGAPGLIDHD-GSVVLAAGL---GWRDVPLRSDLIAALG-R 199 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 V +D ALAEH +G D I + G GAG+I +GR G +G VGEI Sbjct: 200 PAFPVMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLRGHHGYVGEI 259 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT--ICKA 303 GH++++P G C CG GCLE +A AI R+ + P D ++T + + Sbjct: 260 GHLRIQPDGPVCGCGRRGCLEAVAGMPAILARL-------EPADAPETDPQLRTEQLVRR 312 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A +GD+ + + VG LG+ I++ ++L +P+ +V+ G + L+PAIE + A Sbjct: 313 AEEGDTATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGRWLVPAIEQELADGA 372 Query: 364 LKAFRTNLPVVRSELDH-RSAIGAFA 388 L VV S H ++IGA A Sbjct: 373 LVTVSGRCRVVVSTFGHDATSIGAVA 398 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/399 (27%), Positives = 203/399 (50%), Gaps = 6/399 (1%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 P G+ G+ LV++LN + V ++ ++ P+SR +A + L A+V+ + +L GL+ Sbjct: 2 PTGK-HTGDQALVRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLV 60 Query: 63 KEVDQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-R 120 EV +A+ GR + + IG+ +G + + D SS+++ + L + + Sbjct: 61 WEVGIEATDDVGRPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGK 120 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + + + + I + ++ ++ +++ + V +PGLVD G + + P++ + + Sbjct: 121 SPEEVLGLAADLIQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNLGWRDVPVRS 180 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 EERF T +V ++ AL E YFG ++ + + G G GI+ G+I G G Sbjct: 181 MFEERFPFTVYVENEANMAALGESYFGVARGYNCVLYISAGVGVGGGIVLGGQIMRGAMG 240 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ--SRVPLDDCTIK 298 GE+GH+ + G C CGN GC ET+A+ +A+ +R+L L++ + S D T+ Sbjct: 241 FSGEVGHMTMVEDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTVP 300 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 T+ +AA GD LA V+ V R +G IA +N+ NP+ +V+ G ++ ++LP I Sbjct: 301 TVLEAARAGDRLARGVLNEVARDVGLGIANLVNVLNPEIVVLGGMLSMGGDLMLPTIRET 360 Query: 359 INTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLN 396 + + L+ L + + L S + G A V +L+ Sbjct: 361 LEHRGLRWLVQPLRLELAALGRESCVLGGIATVYDRVLS 399 >UniRef50_C6JJM8 Transcription regulator n=2 Tax=Fusobacterium RepID=C6JJM8_FUSVA Length = 402 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/347 (30%), Positives = 177/347 (51%), Gaps = 23/347 (6%) Query: 26 LIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRN 85 I ISR ++A++ + PA + KI +++G+IKE + STGGR+ + + N Sbjct: 26 FIKNSNGISRAELAKELNITPAGIGKIVNGFLKKGIIKEYGEGISTGGRKPLILKINEEN 85 Query: 86 FHAI-GVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKL 144 I GV L I++ D++ KVL Y L +R Q E+ +L + I K Sbjct: 86 IGVILGVSLAPRFIQISIGDINGKVLRTIKYSLKKRLAQK-ENNILKTVEVIIKRELNKN 144 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 +E+ ISVI+ G+VD ++G + PH +N L E LE++F F+ +D+R +AL E Sbjct: 145 KEITIISVIMNGMVDSEAGISIFSPHYNWKNIKLKELLEKKFNRRVFIENDVRGMALTEK 204 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE-PLGERCHCGNFG 263 FG+ ++ + +++ + G G I N ++ G GE+GH+ V+ E+C CG G Sbjct: 205 IFGSCKEKHNFVVLNIGDGVGGSIFLNDSLYKGYGSMSGELGHMVVKRNSSEKCSCGKRG 264 Query: 264 CLETIAANAAIEQRV--------LNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 CLET +N AI +++ + LK + LD ++ I KA + D L ++ Sbjct: 265 CLETEVSNIAIIKKIISQIKLNNYSSLKNVLNEKGTLD---MEDIIKAVKEKDMLTLNIM 321 Query: 316 E---YVGRHLGKTIAIAINLFNPQKIVIAGEITEAD---KVLLPAIE 356 Y+ H I I++ NP+KI++ G I ++ K+L+ +E Sbjct: 322 NEAIYLTAH---AIDGIISVINPEKIILFGAIFKSSFLFKMLVNEVE 365 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 118/402 (29%), Positives = 194/402 (48%), Gaps = 40/402 (9%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 PG Q+ + + N V ++ + G +++ +IA + L+PA+V+ I +L E G Sbjct: 21 PGSQSSL------RAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESG-- 72 Query: 63 KEVD-QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT 121 +VD + A +GGRRA+ + R+ IG+ G + + DL+ +VLAE+ + Sbjct: 73 -DVDVRPAVSGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDI---- 127 Query: 122 QQTLEHALLNAIA---QFIDSYQRKLR----ELIAISVILPGLVDPDSGKIHYMPHIQVE 174 ++H IA + +D +L +++ + + LPG +D +G + + Sbjct: 128 --DVDHQAQEGIATAGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGS--SAILP 183 Query: 175 NWGLVEA---LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISN 231 W V A + ER + V +D ALAE ++GA Q D ++ G G+G++ + Sbjct: 184 GWVGVPAAAQMSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVID 243 Query: 232 GRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP 291 GR+ G G GEIGH ++ G C CGN GCLETI + LL+ S P Sbjct: 244 GRVHRGGAGTAGEIGHTTLDENGSVCRCGNRGCLETIVGTSV-------LLESLRTSHGP 296 Query: 292 LDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVL 351 D T++ + A GD+ + V+ GR +G A NL NPQ IV+ G++ A + L Sbjct: 297 --DLTVRGMIDRAVAGDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETL 354 Query: 352 LPAIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKR 392 L + ++ A+ A +V L R+ + GA ALV R Sbjct: 355 LEPMRQVVHRFAVPAAVPT--IVAGVLGERAEVLGALALVLR 394 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 106/355 (29%), Positives = 170/355 (47%), Gaps = 17/355 (4%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAI- 77 NS V R+I + ISR IA ++ L +V+ + +LIE+GLI+E S+GGR I Sbjct: 17 NSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLIEETGAGQSSGGRLPIL 76 Query: 78 -SIVTETRNFHAIGVRLGRHDATIT--LFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 +V E+ A L D I L D+ + PL Q L + Sbjct: 77 LRVVHESHCVAA----LSFEDTQIVGALVDMRGGIQRRVSVPL----QGYRPEDLPGYLT 128 Query: 135 QFIDSYQRK-LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 Q +D ++ I + +PG+VDP G + + + + L + L++++++ ++ Sbjct: 129 QLLDDLTADPAPHILGIGLSMPGIVDPVRGMVRRAVNFGLVDTPLRQLLQDQYRLPVYLD 188 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 + R ALAE+ FG + +++ + G GAGI+ NG +F G GEIGH+ V Sbjct: 189 NAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGFGAGEIGHVVVADN 248 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQ----GYQSRVPLDDCTIKTICKAANKGDS 309 G RC+CGN GCLET+A+ AI + L T C+A +GD Sbjct: 249 GIRCNCGNVGCLETVASVTAIVRAARRLATDPSSRLRSLASAAAAIDFNTFCRALEEGDD 308 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 + ++ VGR+LG +A + L N ++IV+ G I LL A+++ + AL Sbjct: 309 GVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAVKTSLARHAL 363 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 110/390 (28%), Positives = 188/390 (48%), Gaps = 12/390 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 ++LN + V L+ ++GPISR +A S L +V+ I +L++ G +++V + S GGR Sbjct: 15 RELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRDVGTE-SRGGRP 73 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL----PERTQQTLEHALLN 131 A + + +G+ +G + + D ++ A P P RT + + LL Sbjct: 74 ARLLEFNDDSAAFLGIEIGVEQTAVAVADARGRLRARLEQPTVLRDPHRTVRDIVE-LLP 132 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + Q +++LR A+ LPGL++ SG P++ E + + L ++ Sbjct: 133 KVLQLSGVPRKRLRGACAV---LPGLIERPSGVCVLAPNLGWERFPVRAELSRALRMQVP 189 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V + ++ A+AE GA++ + + V G GAG++++GR+F G G GEIGH +V Sbjct: 190 VYNLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYSGEIGHCRVA 249 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 G C CG GCLET A+ A+ + + Q + + AA GD A Sbjct: 250 DDGPPCGCGRRGCLETFASVMALRRAAEAASARSPQLAALARPHAVSAVASAALAGDESA 309 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + G L + IA+ +NL NPQ IV+ GE+ A +LL + + A++ ++ Sbjct: 310 RAIFHDAGAQLARGIAVLLNLLNPQLIVLGGELLAAPDILLAGVRDGLPRHAVRG--ADV 367 Query: 372 PVVRSELDHRSAI-GAFALVKRAMLNGILL 400 PVV S L + + GA L + + + L Sbjct: 368 PVVASPLGSEAGVLGALLLAREGAVRSLRL 397 >UniRef50_Q9K992 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9K992_BACHD Length = 386 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 102/374 (27%), Positives = 188/374 (50%), Gaps = 16/374 (4%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ +KQ+N V + I + P+SR Q++ + L +V+ + +LI L+ EV Sbjct: 5 GDQRFIKQMNKQIVLQTIRKEAPLSRAQVSLTTGLNKGTVSSLVAELIADNLVYEVGPGE 64 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 S+GGRR + ++ + + +AIG+ + + + L DL V+ + + L + + + Sbjct: 65 SSGGRRPVMLMFQNKAAYAIGINIAVNYLSGVLTDLVGNVIEKVEWSLHVKEFDHVNQQM 124 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + I Q + + +I I V +PG+V+ + G + + P++ L + LEE F++ Sbjct: 125 VQLIEQLMKAAPPSTYGIIGIGVAVPGIVN-EEGDVLFAPNLNWREIPLKKQLEEHFQLP 183 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V ++ + AL E FG ++ E+ I + G G+GII ++ G+ G GE+GH+ Sbjct: 184 IAVENEANAGALGEKVFGKGKESENMIFFSIGIGIGSGIIFGNSLYRGKGGYSGEVGHMS 243 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQG---YQSRVPLDDCTIKTICKAANK 306 +E G C CGN GC E A+ A+ L+QG Y+ + LDD + + A K Sbjct: 244 IETNGPLCTCGNKGCWELFASEKAV-------LQQGEALYEEVLTLDD-----LFEKARK 291 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 G+ A ++ + +G +LG IA IN NP+ +V+ + + L +++ + +AL Sbjct: 292 GEQTAIDLFQKIGVYLGTGIANMINALNPELVVVGNRMVKGRPWLEHSLKQTVADRALSF 351 Query: 367 FRTNLPVVRSELDH 380 + V S+L+ Sbjct: 352 HAEQVLVEFSDLNE 365 >UniRef50_UPI00016C4534 transcriptional repressor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4534 Length = 388 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 116/372 (31%), Positives = 176/372 (47%), Gaps = 18/372 (4%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 LV +LN V R+I G +SR ++A +S L+ +V+K L++ GLI+ D T G Sbjct: 11 LVGKLNERQVLRVIQSRGSLSRAEVARESGLSAPTVSKAVESLLKAGLIEATDAPELTRG 70 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE-HYPLPERTQQTLEHALLNA 132 R A + T + +GV + + L + + P P T L AL A Sbjct: 71 RPAPKLRLATTSAQVLGVAIDVCHCEVVSTGLDGALRDDTLTVPTPA-TYPELIDALTRA 129 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA-LEERFKVTCF 191 F+ R + + V LPGLVD G P++ + N A L ER + C Sbjct: 130 ARTFM---ARPGVTTLGLGVSLPGLVDYRKGCGVLSPNVAITNNHCPAADLAERLGIECT 186 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V + +L LAE ++G ++ +D L+ V G G GI+S GR+ GR+G GEIGH Sbjct: 187 VLQESHALCLAERHYGLAKGLDDFALLDVGAGVGLGIMSGGRLLKGRSGLAGEIGHFTAV 246 Query: 252 PL-GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD-S 309 P+ G RC CGN GCLET+A+++A+ L Q V +D+ + A G Sbjct: 247 PVGGRRCGCGNTGCLETVASDSALAW----LASQKLGRTVNVDE-----VIDLARSGSVD 297 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 L++E+ E G + +A INLFNP + I + E D+ L + +AL Sbjct: 298 LSAELREVAG-FVAVGLAAVINLFNPATVFIHTPLFEIDEALFGTVVGRARERALPPSFA 356 Query: 370 NLPVVRSELDHR 381 + +VR++ R Sbjct: 357 DCTIVRAKGSKR 368 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 111/394 (28%), Positives = 200/394 (50%), Gaps = 6/394 (1%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 +GN L+KQ+N V + I ISR +I++ L A+V+ +T +LI+ G + E Sbjct: 1 MGNHTLLKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYG 60 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEH 127 S GGRR + + IG+ LG I L + +V+ EE+ + ++ L Sbjct: 61 KSKGGRRPVLLQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFEEYANMKIGEDKEKLLR 120 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L + I + + + + ++ I + +PG+++ +SG + P+++ +N L ++++F Sbjct: 121 LLFDLIEKSVKKAPQTPKGILGIGIGVPGIIEKESGTVLLAPNLKWQNVPLRSIVQQKFN 180 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + ++ ++ + AL E +FG D I + V G GAGII + ++F G G GE+GH Sbjct: 181 LPVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVGH 240 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV----PLDDCTIKTICKA 303 + + C CGN GCLE A+ A+ + L+KQG + R +D+ T I +A Sbjct: 241 TTINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWENVDEITPSRIIQA 300 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A +G + I V +G +A +N+FNP+ ++I + + ++ L + IN ++ Sbjct: 301 AKEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQRS 360 Query: 364 LKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLN 396 A NL + S+L R+ + G A+V ML+ Sbjct: 361 FIAQFYNLKIEVSKLKDRAVVLGCIAMVISDMLS 394 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 171/354 (48%), Gaps = 10/354 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N ++ N A V RLI + PISR+++A+Q++L +V+ I +LI L+ E + S Sbjct: 8 NSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLVMERELGVS 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 GGR+ I + + + IG+ H + DLS + E T + L A++ Sbjct: 68 NGGRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGNTIHEVETMGKFDTNEELMEAVV 127 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 Q ID+ ++ + I + + G+V+P++G I + P + + L E LE+RF Sbjct: 128 QLCQQLIDATD-QVGTIHGIGISVHGMVNPETGVILFAPRFHLHDVALKEHLEQRFAYPV 186 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 F+ +D+R+LA E FG + + G G + +G++ G N GE+GH+++ Sbjct: 187 FIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENHITGEVGHMRL 246 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 + G C CGN GCLE +A A L + +++ P T+ + + D Sbjct: 247 DLDGPICSCGNRGCLEALAGEKA--------LLRDFEAVDP-QVKTLTELRRRLTDQDPH 297 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 A+ G ++G + I+L NP++I++ G + E ++ I+ + AL Sbjct: 298 ATAAYHRAGEYIGIGVLNTIHLINPKRILLGGPMFELAPSIVDQIKERVEHTAL 351 >UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D498_GEOSW Length = 397 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 110/384 (28%), Positives = 195/384 (50%), Gaps = 8/384 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 GN+ LVK++N V +LI + ISR +IA+ + L A+V+ + +LI + E Sbjct: 5 GNIGLVKKINKQIVLKLIREKNNISRAEIAKITGLNKATVSALVDELISEHFVSESGIGV 64 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHA 128 STGGRR + + IG+ LG + L DL+++++ E+ P Q+T+ Sbjct: 65 STGGRRPLMLRFNEAAGSLIGIELGVNYIYAVLTDLNAEIIWEKMCPFRANEKQETIIEK 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF-K 187 ++ I + I ++ I + +PG+VD + G + + P++ ++ L L++++ Sbjct: 125 MIAMIHEAIRQAPTTPYGIMGIGIGVPGIVDAEEGLVVFAPNLHWDHVSLSSILQKQWPN 184 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + ++ + AL E +FGA ++ + + V G GAG+I + +++ G +G GEIGH Sbjct: 185 YPIIIENEAKLAALGEKWFGAGKEFANFVYVSAGIGIGAGVIIHNQLYRGIDGIAGEIGH 244 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 ++ G RC CGN GC E A+ I++R L ++ Y S L+ +++ + A G Sbjct: 245 HVIDVHGFRCSCGNNGCWEMYASEKYIQRR---LEQEHYHSM--LEGFSVEKVRALAESG 299 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK-VLLPAIESCINTQALKA 366 D ++++ VG +LG I I +NP+ +++ I +A K VL PA E +K Sbjct: 300 DKQMAQILAEVGHYLGIGILHIIYAYNPEAVIVGSTIGKAGKWVLEPAREEVEKRILVKN 359 Query: 367 FRTNLPVVRSELDHRSAIGAFALV 390 + L+ AIGA A V Sbjct: 360 GNGPFIIPSQLLEKSCAIGAVASV 383 >UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP32_9FIRM Length = 406 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 116/409 (28%), Positives = 192/409 (46%), Gaps = 19/409 (4%) Query: 1 MTPGGQAQIG-NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIER 59 M G A+ G N L+KQ N + +LI SRI++++++ LA +VT I + +ER Sbjct: 1 MGAGKMAKSGVNNTLLKQRNRGLILKLIATGQCSSRIELSQKTGLAKMTVTYIVNEFLER 60 Query: 60 GLIKEVDQ-QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP 118 G+ +E + Q GR + + + IGV L R ++ L D+ K+L + +P+ Sbjct: 61 GIFEERQKVQVEGKGRNPVQLCISDKAPKLIGVHLYREICSVILCDIQLKLLKKICFPVT 120 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWG 177 E T L + +A+ Q +++ + I I I P VD + GKI P+ + + Sbjct: 121 EETAPQLMEHIFHALDQIMETLGDEKIYGIGIGAIGP--VDKNRGKILAPPNFYGLHDLE 178 Query: 178 LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 + +EE + F + A+ E Y+GA DCED I V + G G+G++ NG ++ Sbjct: 179 IAREIEEHCHMPVFFDGESNCAAIMEKYYGAGTDCEDFIYVDLANGVGSGLVVNGELYAN 238 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIE---QRVLNLLKQGYQSRVPLDD 294 +G + E+GH ++ GE C CGN GCLE ++ +E Q+V +K ++ D Sbjct: 239 TSGMICELGHTSIDWQGEPCSCGNRGCLERYISSNVLESQLQKVTGDMKD-FRGFCQEMD 297 Query: 295 CTIK-----TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 IK T K D + +E+ E L + +N NPQKI+I E Sbjct: 298 EAIKEGEGNTFTKRQQDMDRVFTEMTE----KLSCALVGFVNSLNPQKIIIGHEGYWIPD 353 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAMLNG 397 L IE +N + ++ + VV+S D + G + A+ G Sbjct: 354 PYLCKIEKLVNERHIERKYRQIQVVKSGFKDEATVYGCTGALLTAVFEG 402 >UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGH9_NAKMY Length = 386 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 108/390 (27%), Positives = 186/390 (47%), Gaps = 27/390 (6%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST-GGRRAI 77 + AA+ RL+ +GP SR +A + +L+PAS+T+I R L + GL+ E + GR + Sbjct: 15 SRAALVRLL-VHGPASRADLARRLRLSPASLTRIVRTLEDSGLVVESETTVPQRMGRPSQ 73 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFI 137 ++ H +G++L + + D+ S VL PL Q ++ I + I Sbjct: 74 AMEVNVDAVHLVGIKLLAGEINLVRTDMRSTVLGHRTIPL----QTVPLDPAIDRITEAI 129 Query: 138 DSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIR 197 + + A+ + L G VDP S + + P + E+ L + ER + + +D+R Sbjct: 130 LAEVAVDPAVGAVGISLAGPVDPSSDMVTHSPFLGWEDVPLARLVSERTGLPTVIENDVR 189 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 +L AEH+FGA+ D +LV + G G G++ R+ G G G+IGH+ + P G C Sbjct: 190 ALTAAEHWFGAAAGATDFVLVTIGAGIGCGVVIGDRLVDGNTGGAGQIGHLPITPSGPLC 249 Query: 258 HCGNFGCLET-IAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIE 316 G+ GC + +A++A + Q + L + D T + A++G+ +AS V+ Sbjct: 250 ERGHRGCARSYLASSAMVGQASMALHRP---------DLTYAELVSLAHQGERVASRVVR 300 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 G LG I + + P K++I+GE ++P + + +A + +P V Sbjct: 301 DAGYALGTLIGLVTAITAPSKVIISGE----GVTMVPLVMDVVQERASEVEHWAVPDVPI 356 Query: 377 ELDHRSAIGAFALVKRAMLNGIL-LQHLLE 405 E I F V+ A ++ LQ LLE Sbjct: 357 E------IAEFGFVEWARGAAVIALQQLLE 380 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 183/382 (47%), Gaps = 26/382 (6%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 TPG Q+ + ++ N + I Q+G ++++++A + L+ A+V+ I ++L G+ Sbjct: 7 TPGSQSSL------RESNRTRIIDAIKQFGGLTQVELAGATGLSAATVSNIVKELTTLGV 60 Query: 62 IKEVDQQASTGGRRAISIVTETRNFHAIG-VRLGRHDATITLFDLSSKVLAEEHYPL--P 118 ++ S GRRA VT R +G V+ G + L D S +L++ PL Sbjct: 61 VQTSPSTRS--GRRA-QHVTLARTPGLVGAVQFGLRHMRVALADSSGSLLSDHQLPLGAD 117 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ--VENW 176 R L+ A L IA ++++ + EL ++V LP V+ SG I P I +N Sbjct: 118 HRADAGLDRAAL-LIADMMETFDAESAELQGVAVALPAPVEHSSGLI-TSPGIMRGWDNV 175 Query: 177 GLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 + + ER +V + AL E GA+ + ++ ++V + GA +I NG +F Sbjct: 176 AVAHVMSERIGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELFW 235 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT 296 G NG+ GE GH +P G+ C CGN GCLET+A N+L + RV T Sbjct: 236 GANGSAGEFGHTTTDPDGQICRCGNRGCLETVAGG--------NVLLEAL--RVSHGVMT 285 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 +K + + A GD I GR +G A N+FNP+++V+ G++ +LL + Sbjct: 286 LKDMMRYARDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDPLR 345 Query: 357 SCINTQALKAFRTNLPVVRSEL 378 I +L + + +V L Sbjct: 346 ETIERFSLPSTAECITIVPGSL 367 >UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJQ5_CATAD Length = 390 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 109/381 (28%), Positives = 183/381 (48%), Gaps = 10/381 (2%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG--R 74 + AV L+ + GP+SR QIAE +L+PA++T+ TR+L+ GL+ E + S GG R Sbjct: 11 DMTRTAVLALLARRGPLSRAQIAEMLELSPATITQGTRRLLAEGLLVEEAPRPSAGGGGR 70 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 ++ + + H IG+++ T L + V+ + + +E L I Sbjct: 71 PSVPLSLVPGSAHTIGIQVAHEHVTGVTSRLDATVVHSFRHAFDPASPDAVE-TLTALIR 129 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 I+ +R+ L + V +PG+V+P++G + + L L E V FV + Sbjct: 130 SEIEEIERRGLPLAGVGVAVPGIVEPETGTLSMSVRLGWTGLPLAARLREALGVPVFVDN 189 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 DI ++ AE +G D D +L + +G G G++ +G + G G GE GH+ V+P G Sbjct: 190 DISAVTAAERLYGPGADEADFLLAAIGQGIGLGMVLDGAPYRGAAGAAGEFGHMPVQPDG 249 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 +C CGN GCLE++ + A LL+ +++ + + + + AA GD A ++ Sbjct: 250 PQCVCGNRGCLESLVSTEA-------LLRTAHEAGILPAESDLDDLGTAARHGDPAAVQL 302 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 + LG+ +A +NL P+ ++I GEIT +L + + L A R V Sbjct: 303 LHNAATLLGRALAGVVNLLGPRSVIIIGEITAIWDLLDDPLHEALLDHLLPAVRDTRIEV 362 Query: 375 RSELDHRSAIGAFALVKRAML 395 R D A A +V A L Sbjct: 363 RPWHDEVIAASAARVVLAAPL 383 >UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D084_HALOH Length = 378 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/375 (25%), Positives = 174/375 (46%), Gaps = 23/375 (6%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q GN+ L+K++N A + + + Q GP+SR + + + L+P +++ IT +LI+ GLI EV + Sbjct: 2 QRGNMKLMKKINRALIIQTLSQQGPLSRADLTKITDLSPTTISSITEELIQEGLIVEVGE 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S GGRR I + +F+ + V + + LF+L +V+ H + + L+ Sbjct: 62 GESKGGRRPILLDINPEDFYILSVNIAVDVMYVYLFNLKFQVINSVHDLIKKPVSPNLDS 121 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L + + +++ + ++ + + G+++ + G I Y + + ++ L++ ++ + Sbjct: 122 QLKELVQKVVENSNIGKKNVVGMGIGATGIINKEKGLITYSASLGISDYPLLDKVKREYD 181 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + +D AL E FG + + + + G GII + I+ G+ G GE GH Sbjct: 182 FPILLENDTNLAALGEKKFGCGRQLTNFFYIMIGSAIGGGIIIDNEIYRGKFGGAGEFGH 241 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP---LDDCTIKTICKAA 304 I VE G C CGN GCL + I R ++ +Q + D C C+ Sbjct: 242 ITVEKDGPLCECGNQGCLNAVLT-PYITVRSREEFRKSFQEIIKDDNFDSCRYHEFCE-- 298 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIESCINTQA 363 +L I LF+P+ IV+ GEI A + +E I + Sbjct: 299 ----------------YLAMAITNYTKLFDPEAIVLGGEIARIAPERFYIDLEKYIKRMS 342 Query: 364 LKAFRTNLPVVRSEL 378 LK + +PV+ S + Sbjct: 343 LKGMNSKIPVLPSSI 357 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 12/339 (3%) Query: 31 GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-QQASTGGRRAIS--IVTETRNFH 87 GP+SR+ +A + ++ A+VTK R ++ G + E+D ++ + G R +S +T R F Sbjct: 27 GPLSRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITPDREF- 85 Query: 88 AIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLREL 147 IGV++ + + DL +++ H LP+ T+ L + + +D+ + Sbjct: 86 VIGVKVTADEVIGVVADLKARIRNSAHRQLPDCEPATVLATLAALVEELLDADPELRGKT 145 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 + V + G VD G + P + ++ L + + + V +D+++L +AEH+FG Sbjct: 146 RRMGVAVSGDVDRVRGVVRLSPLLGWQDVDLAGPVGDATGLVVVVENDVKALTVAEHWFG 205 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 +D LV V G G GI++ GR+ G G GE+GH+ V+ G CHCG GC+E Sbjct: 206 DGVGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGARGCVEA 265 Query: 268 IAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIA 327 IAA AI R L + D T + A G + G +G I Sbjct: 266 IAATEAIVGRARLLTGR--------DGLTFTEAAELARSGSPEVCALFSEAGTAIGLAIT 317 Query: 328 IAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 +NL P++IV++GE +A + I T A A Sbjct: 318 AVVNLIGPERIVVSGEGLDAYDLFETEIRQAYATHAFGA 356 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/366 (29%), Positives = 183/366 (50%), Gaps = 10/366 (2%) Query: 31 GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIG 90 GP+SR +IA + L+ A+V + +L+E G+++E + S GGR + +G Sbjct: 35 GPVSRQEIAAATGLSFATVANLVAELLEAGVLREAGHEDSKGGRPRARLAVNAERGALVG 94 Query: 91 VRLGRHDATITLFDLSSKVLAEEHYPLPE---RTQQTLEHALLNAIAQFIDSYQRKLREL 147 + + + LFDL+ VL PLP+ R Q ++ A++ + DS R + Sbjct: 95 IDVAETSVQVELFDLALTVLRGVRLPLPQTDVRPQDVVD-AIVAGVEGLSDSAVEAPR-I 152 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 + V +PGLV+ + G + P+ + L L ER + ++ + +++ +AE +FG Sbjct: 153 LGAGVSVPGLVEREGGVSVFSPYWSWRDVPLRSLLAERLPMPLYLDNPLKAGTVAEMWFG 212 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A ++ +D +++ + G GAGI +G ++ G + GE GH + G C CG GC+E Sbjct: 213 AGREVDDLVVLTLRAGVGAGIAVDGALYRGATNSAGEWGHTCLVRGGRACRCGRQGCVEA 272 Query: 268 IAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIA 327 ++ I V L + P +D + + +AA +GD++A+E + R+LG+ A Sbjct: 273 YVSSRGIADTVRELDAESPLLD-PDEDVVVTKVARAAAEGDAVAAEAVARTARYLGEAAA 331 Query: 328 IAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAFRTNLPVVRSEL-DHRSAIG 385 +NLFNPQ +V+ G + E + LL I AL A L RS + D+ +G Sbjct: 332 DLLNLFNPQTLVLGGWVAERLGEPLLRQTRDVIAAHALPATLQALTFQRSTVPDNPVTLG 391 Query: 386 A--FAL 389 A FAL Sbjct: 392 AATFAL 397 >UniRef50_C2KRE7 Possible N-acetylglucosamine repressor n=1 Tax=Mobiluncus mulieris ATCC 35243 RepID=C2KRE7_9ACTO Length = 409 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/383 (27%), Positives = 192/383 (50%), Gaps = 35/383 (9%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG-GRRAISI 79 AAV + +G SR +A + +++PA +T++ ++L++ GLI+E++ +T GR ++ + Sbjct: 21 AAVIASLGLHGSQSRADLARRLEVSPALITQVVKKLLDEGLIQELNSAETTQMGRPSVQL 80 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDS 139 ++ ++ A+G+++ + LS +V PL + + E + + +F+ S Sbjct: 81 GLKSVDYTAVGLKVASDHISCVESTLSGEVCKSTEIPLNASSLEVAE-IIARELKKFMGS 139 Query: 140 -YQRKLR----------ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 Y+ ++ + + I + L+ D+ MP L + L ++ Sbjct: 140 GYENRVLGVGVGVPGTVDALEIGEVNSTLLGWDT-----MP--------LGKLLRNELRL 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILV-RVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 V +++ +LA+AE+ FG D DS+LV + G G+G + G + G G G +GH Sbjct: 187 PVIVENNVNALAVAEYLFGVG-DVYDSLLVVTLGTGVGSGYCNEGTVLHGMRGAAGNLGH 245 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 + V+P GE+CHCGN GCLET+ +A L+ + +D I+ + AN G Sbjct: 246 VIVKPGGEKCHCGNSGCLETLIGESA-------LITAARSRGLIREDQKIEALIDLANSG 298 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 + A+++ HLG++IA +N+ P+ IVI GE T+A K + + + +K Sbjct: 299 NEDAAKIFSRGAEHLGRSIAAVVNVLAPEVIVIQGEGTQAWKYWDSVFKHTLRSNIIKEL 358 Query: 368 RTNLPVVRSELDHRSAIGAFALV 390 R V+R D + A+GA +LV Sbjct: 359 RDIDVVIRQWRDDKWALGAASLV 381 >UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepID=B7GQ98_BIFLI Length = 404 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 104/359 (28%), Positives = 173/359 (48%), Gaps = 19/359 (5%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 V + N + + + + G SR QIA+ +L PA++TKIT +LIE G+I+E + R Sbjct: 14 VSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETGDLEGSKNR 73 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 R+I + +T F IG++ R I +FDL L+ E+ LP T+ ++ I Sbjct: 74 RSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFEN--LPTVYDNTINDTIVT-IH 130 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE---RFKVTCF 191 Q ++ ++AI + +PG + G+ + +Q W + ++E F+V F Sbjct: 131 QRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSSMQ--GWRKINFIDEFATAFRVPVF 188 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVR-VHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 + D R+ ALA + F S + ++ V G G G+I NGR+ G G EIGHI + Sbjct: 189 IEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAATEIGHISI 248 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTICKAAN 305 + G C CGN GCLE + AI L+ G + VP + + + A Sbjct: 249 DVNGRPCDCGNVGCLERYCSTPAIHDM---LIADG--TVVPGAADMTNTAAARALFAKAG 303 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD A ++ V +++G N +NP+ I+I + EA +LL + + + +A+ Sbjct: 304 DGDEAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAI 362 >UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWX4_STRM9 Length = 388 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 101/390 (25%), Positives = 189/390 (48%), Gaps = 15/390 (3%) Query: 15 VKQLNSAA--VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +K+LN + LI + ++R+ ++ + ++PA+++K ++LIE L+ E D +S G Sbjct: 1 MKRLNETEYEILELISKNHCVTRMDLSLKLNISPAAISKTMKKLIEENLVLEDDTLSSKG 60 Query: 73 G--RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 G R+ + I +E + IG+ G I++ + ++ + Q L L Sbjct: 61 GRPRKILKINSEYK--KVIGINFGPGFIYISVSKIDGSIIETRKKKFQFKVSQKLITLLT 118 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 + + + Y + E++ I + + G+V+ G + PH++ N L E LE +F + Sbjct: 119 DELDLLFERYNK--NEILGIGLAVNGIVNTRDGSSIFSPHLKWSNIKLREYLENKFNLPV 176 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V +D+R++ AE Y + + + + + G G+ I+ N +IF G N GEIGH + Sbjct: 177 IVDNDVRAMLKAEIY--KVKKLSNVMYIYIRDGIGSSIMINNKIFEGVNFCTGEIGHFII 234 Query: 251 EPL-GERCHCGNFGCLETIAANAAIEQRVL-NLLKQGYQSRVPLDDCTIKTICKAANKGD 308 P RC CG +GCLE ++ I +V+ L KQG + + + T K I + A+ G+ Sbjct: 235 NPTSNSRCQCGKYGCLEAEYSSKMIRNKVIWELEKQGIE--LENNYITYKEIFEKASFGE 292 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 +++ +G T+ +N+ + I+IAG+I A + L E I+ +F Sbjct: 293 EPYKAIVKEASIKIGSTVGNILNVLDIGNIIIAGDILHAKNIFLKNFEKGIDLMKTHSFE 352 Query: 369 TNLPVVRSEL-DHRSAIGAFALVKRAMLNG 397 + + + +E D GA LV + +G Sbjct: 353 SMVNIYTTEFGDDVEKYGAIFLVIMNLFSG 382 >UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX6_9ACTO Length = 396 Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 186/396 (46%), Gaps = 27/396 (6%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 PG QA + ++ N V ++ Q+GP+++++IA S L+ A+V+ + ++L + GL Sbjct: 7 APGSQASL------REANRERVLGVVRQHGPLTQVEIAAASGLSAATVSNMVKELDQAGL 60 Query: 62 IKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER- 120 + + GRRA+ + + GV G D + + S ++LAE+ PL Sbjct: 61 VGL--SPSIRNGRRAVLVSLASGGGLLAGVAFGERDVRVAIASESREILAEQLMPLQADH 118 Query: 121 -TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG-- 177 +E A +A +S +++ ++ AI LP VD SG+ + W Sbjct: 119 VADDGMERAA-RLLADLTESVGQRVEDIGAIGFGLPTPVDSVSGEAGS--DAVLPGWRGV 175 Query: 178 -LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 + EA+ + + + AL E GA +D + ++ G GAGI+ G +F Sbjct: 176 HVAEAMSGYLRAPVVLDNTANLAALGELRAGALRDVQHGCYIKFSYGVGAGIVLGGEVFR 235 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT 296 G G GEIGH+ ++ G C CGN GCL+T + A LL S PL Sbjct: 236 GSAGTAGEIGHLTIDENGPICRCGNRGCLDTFVGSRA-------LLNSLAASHGPL---R 285 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 ++ + A GD VIE GR +G +A +NLFNP+ IV+ G++ EA ++++ + Sbjct: 286 LRDVITRALAGDLGCRRVIEDAGRRVGVAVAGLVNLFNPEVIVVGGKLAEAGELVMLPLR 345 Query: 357 SCINTQALKAFRTNLPVVRSEL-DHRSAIGAFALVK 391 ++ A+ + + + +EL D +GA L Sbjct: 346 EALDRCAIPSAAATVELRPAELGDTADVLGAIELAS 381 >UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bifidobacterium RepID=C6A8T4_BIFLB Length = 401 Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 101/358 (28%), Positives = 158/358 (44%), Gaps = 19/358 (5%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 + + N A + + +G SR QIA+ L PA+++KI+ L+ G I E G R Sbjct: 12 LSEYNRARTLQYLHHHGIASRAQIAKALHLTPAALSKISNHLLASGAIVETGALEGKGNR 71 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 R+I + R F +GV+ R I LFDL+ K P E T I Sbjct: 72 RSIGLAVNARAFQVLGVKFARSLIEIGLFDLAGKPSFIRELPTVENT----------TIP 121 Query: 135 QFIDSYQRKLRELIA-------ISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERF 186 Q I+S ++R L+A I + +PG D G + + Q E F Sbjct: 122 QAIESLHAEIRRLLAEHPHILAIGMAVPGPYLRDRGHTAVVSSMGQWRQVNFRAEFEHAF 181 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V + D R+ ALA++ F + E+ + G G G+I +G + G G EIG Sbjct: 182 DVPVIIEQDARAGALAQYLFDPNPANENLAYYLLGEGIGLGVIDHGTVINGSLGAATEIG 241 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ ++ G+ C CGN GCLE + AI + +L SR+ + + + A Sbjct: 242 HVSIDVNGKACDCGNVGCLERYCSAVAIHEAMLGNGMLATDSRLTHREACAELFAR-AQS 300 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD A E++E +G +G N FNP +IVI + +A + LL + + + + Sbjct: 301 GDGQARELVERIGTFVGYGCVTICNAFNPSRIVIGDIVAQAGEPLLQRVREVVGERVI 358 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/398 (28%), Positives = 195/398 (48%), Gaps = 18/398 (4%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAE---QSQLAPASVTKITRQLIERGLIKEVDQ 67 NV V N + +I + I IA+ + L+ +T + LI GLIK+ + Sbjct: 13 NVTGVAYKNVSLKKYVISYFANIGNATIADLCKELNLSAPKITNLLSDLIADGLIKDYGK 72 Query: 68 QASTGGRRA--ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVL-AEEHYPLP-ERTQQ 123 STGGR+ +V ++ F IGV + ++ I L +L ++ E P + ++ Sbjct: 73 VESTGGRKPNLYGLVPDSAFF--IGVDIKQNHINIGLSNLQKNLIRITEKIPYHLDNNKE 130 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 +LE AL I FI +L+ + + L G ++ +G + + E L + +E Sbjct: 131 SLE-ALCKLINDFIGELTIPKEKLLGLGINLSGRINYATGYSYSFFYFNEE--PLSKIIE 187 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 + + F+ +D +S+A E G + ++ + + + G G GI+ NG+++ G++G G Sbjct: 188 SKIGIRVFLENDSKSMAYGEFSAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSG 247 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQG-----YQSRVPLDDCTIK 298 E GHI + C CG GCLET A+ A+ + L +G Q+ +D ++ Sbjct: 248 EFGHIPMFDNEIICRCGKKGCLETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKME 307 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 I AA D LA E+I +G +LG+ IA+ INLFNP+ +++ G + ++ + I+S Sbjct: 308 DIINAAIHDDVLAIELIAKIGDNLGRGIALLINLFNPELVILGGSLAATEEYIRLPIKSA 367 Query: 359 INTQALKAFRTNLPVVRSELDHRSA-IGAFALVKRAML 395 IN +L + + S+L R+ IGA LV+ +L Sbjct: 368 INKYSLSLVNQDTNLKMSKLGERAGIIGACLLVRNRLL 405 >UniRef50_D1NUM3 Transcriptional repressor in the Rok family protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUM3_9BIFI Length = 417 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/403 (26%), Positives = 178/403 (44%), Gaps = 41/403 (10%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 N + V + +GP+SR IA+ +L PA+++KIT +LIE GL++E G RR+I Sbjct: 33 NRSRVLHHVYHHGPVSRATIAKALELTPAAISKITAKLIEAGLLEETGDMQGEGRRRSIG 92 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSS------KVLAEEHYPLPERTQQTLEHALLNA 132 + FH V+ R I ++DL+ ++ A EH +PE L+ Sbjct: 93 LRMNKSAFHVASVKFARTLVCIGVYDLAGNQLSMQEITAVEHTQIPE---------TLDT 143 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE---RFKVT 189 + ++ K R +IAI + +PG G+ + +Q W V ++E V Sbjct: 144 VHSMLEKLLAKDRRIIAIGMAVPGPYLRAVGRTAMVSSMQ--EWRAVNFIDEFSHSLSVP 201 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 F+ D R+ L+ FG + G G G+I G G EIGH+ Sbjct: 202 VFIEQDARAGVLSYRLFGQGDADRHLAYYLLGEGVGLGVIDGDETINGELGAATEIGHVS 261 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD--DCTIKTICKA---- 303 ++ G C CGN GCLE + +I + LN +S + D T + C+A Sbjct: 262 IDVNGRSCECGNVGCLERYCSAVSIHEE-LN------ESGIVADSESMTHREACEALFRL 314 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A G+S A +++ +G ++G IN FNP +I++ ++ +LL AI ++ + Sbjct: 315 AASGNSQAVAMVQRIGTYVGYGAVTIINTFNPSRIIVGDIVSGGGDLLLSAIRRVVDARI 374 Query: 364 LKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 L +V ++ ++ A G+ ++H L N Sbjct: 375 LPELNARTTIVLADASADASTKGAA--------GVAVEHFLAN 409 >UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=Clostridia RepID=A5CYL2_PELTS Length = 337 Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 30/332 (9%) Query: 85 NFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHALLNAIAQFIDSYQRK 143 +F+ IGV LG L +VL+E P R Q + +++++ Q ++ Sbjct: 3 SFYVIGVDLGGTKIYTALAADDGRVLSEIKLPTEAGRGLQGVIDRIVHSVEQVRENVAVP 62 Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAE 203 ++++A+++ PG +D G IH+ P+++ N + + LEER + + +D AL E Sbjct: 63 PQKVLALALGAPGPLDTAGGVIHFAPNLRWNNVPIRQILEERLSLPVLLDNDANLAALGE 122 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFG 263 H FGA + C + + + V G G G+I +G+++ G + GEIGH+ V P G C CGN G Sbjct: 123 HVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAGEIGHMTVLPDGPVCSCGNRG 182 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS-------------- 309 CLE +A+ AI + L+ G ++ AA GD Sbjct: 183 CLEAMASGTAIARAAAELVASGGGRKI-----------LAAAGGDPGRINAAAVAAAAAG 231 Query: 310 ---LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 A+ +I+ +LG +A +NL NP +V+ G + E + + + + +AL+A Sbjct: 232 GDPEAAAIIDRAAGYLGIGVASILNLLNPAMVVLGGGVMEIGEPVWKGVRREVQARALQA 291 Query: 367 FRTNLPVVRSELDHRSAI-GAFALVKRAMLNG 397 R+ +V +EL R+ + GA AL + + +G Sbjct: 292 ARSRARLVPAELGGRAGVMGAIALALQEIADG 323 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 155/317 (48%), Gaps = 16/317 (5%) Query: 33 ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHA---I 89 I+RI IA+ + ++PA+VT IT +L+ GLI+E+ + + G RR V A Sbjct: 62 IARIDIAQATGMSPATVTAITAELLAAGLIEEIAPELAPGARRGRPRVALRLRGAARLIA 121 Query: 90 GVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRK----LR 145 G+++ H + + D + LA PL + T E L I + +D K + Sbjct: 122 GLKVSHHVISTVITDFVGQELASHEMPLVQGTMPVPE--LCAQIRRALDLTCEKGGFSIE 179 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 +L + + + G++D D G I++ ++ N A+ F+ +D +A AEH Sbjct: 180 DLSGVGLGMAGMMDADRGFIYWSSSLEERNVAFTAAISAELPCPVFLDNDANLVAKAEHL 239 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 FG + C++ I++ + G G GI+ + +I+ G G E+GH +V G C CG GCL Sbjct: 240 FGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELGHTKVHLEGALCQCGQRGCL 299 Query: 266 ETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKT 325 E + A LL++ S TI ++ ++A GD +A +++ R Sbjct: 300 EAYVGDYA-------LLREANISSGSERHTTIASLFQSAENGDVVAKSILDRARRMFAMG 352 Query: 326 IAIAINLFNPQKIVIAG 342 +A +N+F+P KI++AG Sbjct: 353 LANVVNIFDPSKIILAG 369 >UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357A7 Length = 405 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 159/350 (45%), Gaps = 11/350 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV----- 65 N+ VK+ N A + +I +YGPISR +IAE L P ++T LIERGL+ E Sbjct: 7 NLPRVKKQNEALIKEIIYKYGPISRSKIAEMLSLTPPTITTNVTSLIERGLVYEFAADDS 66 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 D + + GR+ + I +A+GV + + I + DL YP RT Sbjct: 67 DVEERSLGRKPVKINFVQEAKYAVGVEMNPYHTAICMLDLRGNEKISMRYPPMNRTYVEE 126 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 L I + I + +++ + V LPG V+PD G + + + L R Sbjct: 127 MDVLARNINKLIQDSGTEPEKILGVGVGLPGFVEPDVGVLRESFKTEWNGKNIARDLSRR 186 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + + ++ R A+ E FG + + + G + R+ G N + GE Sbjct: 187 LDLPVLIENNARVRAIGEEMFGKTLRPDSFAYYLISYGIACPLFVKNRMITGDNASAGEA 246 Query: 246 GHIQVEPLGERCH-CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKT 299 GH+ V+ G +C CG+ GCLE +A+ AI ++ + G + + ++ T+K Sbjct: 247 GHMVVDINGPKCETCGHNGCLEELASERAIIKKCKAAARAGVSTMLTELCPDIEGLTMKD 306 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 + A D+ +V+E +LG T+A INL +P +++ G + + + Sbjct: 307 VLMAEECNDAYVVKVMEEAVMYLGVTLANIINLISPPLVIVDGYMMKVKR 356 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 126/391 (32%), Positives = 180/391 (46%), Gaps = 42/391 (10%) Query: 36 IQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ-----ASTG-----GRRAISIVTETRN 85 + +A + L+ ++++ I +L++ GL++E Q+ AS G GRRA + R Sbjct: 1 MDLARELGLSRSAISSIVTELMDAGLVREAGQRVAGNGASRGAGGPVGRRATLLSLNARA 60 Query: 86 FHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ-------TLEHALLNAIAQFID 138 H + V LG A + L DL LA RT Q +ALL +AQ + Sbjct: 61 AHLLAVDLGASHARVDLLDLRCTTLAT-------RTAQHDILRGPAATYALLKELAQAVL 113 Query: 139 SYQRKLRELIA-ISVILPGLVDPDSGKI---HYMPHIQVENWGLVEALEERFKVTCFVGH 194 RE +A + +PG VD +G + MP EN ++ LE + V + Sbjct: 114 EEAGVPRERVAAVGAGVPGPVDYATGCVVQPPNMPGWDGEN--VMAGLERVLDLPTRVDN 171 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 D ALAE FG + D I V+V G GAG++ GR+ G G GEIGHI + G Sbjct: 172 DANLGALAESRFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQG 231 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 GN G LE+ AA + + G S +P D T+ + AN D LA V Sbjct: 232 PVGRSGNPGSLESYAAAQVLLETARARRAGGVPSTLP-DPLTLADLIAFANT-DPLARAV 289 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI-ESCINTQALKAFRTNLPV 373 G HLG I+ A+NLFNP +VI G + +A +V L A+ ES ++ + R N Sbjct: 290 WAEAGHHLGVAISTALNLFNPSAVVIGGRLAQAGEVFLHAVRESALS----RTMRINADR 345 Query: 374 VRSELDHRSAIGAFALVKRAMLNGILLQHLL 404 R +L S +G A V A +LL HL Sbjct: 346 ARIDL---STLGEGAGVLGA--GAMLLDHLF 371 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 183/389 (47%), Gaps = 22/389 (5%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 TPG Q+ + ++ N V ++ + G ++ ++A + L+ ASV+ I R L G Sbjct: 7 TPGSQSAL------RRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGT 60 Query: 62 IKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEH--YPLPE 119 + D S+ GRRA +I + + V + + D +LA E Y + Sbjct: 61 VLVRDT--SSNGRRAKAITLVRQPGAVVAVDFTADSVRVAVGDSDGNMLAREEIGYDVAS 118 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVI-LPGLVDPDSGKIHYMPHIQVENW-G 177 ++ + A +A+ I R R ++ V +PG +DP +G++ + + W G Sbjct: 119 DAERGVRRAAW--LAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLP--RWAG 174 Query: 178 LVEA--LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIF 235 A L ER + +D LAE + GA E + + ++ G GAGI+ +G++F Sbjct: 175 FRPARELTERLGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLF 234 Query: 236 IGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC 295 G G GEIGHI ++P G C CGN GCLET + + L++L Q D Sbjct: 235 RGAGGTAGEIGHIALDPRGHVCRCGNRGCLETFVGASYL----LDMLPQNTDVARGPDPV 290 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 I + AA +GD + +I G LG+ AI NLFNP ++V+ GE+ +A +LL + Sbjct: 291 RIPDMVAAALEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPM 350 Query: 356 ESCINTQALKAFRTNLPVVRSELDHRSAI 384 + +L + L +V S L +++ Sbjct: 351 RRSMELGSLSSALDRLELVPSALGRDASL 379 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 169/384 (44%), Gaps = 20/384 (5%) Query: 25 RLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG--------GRRA 76 R++ Q GPI R+QIA ++ L+ A+VTK LIE G + + + G GR Sbjct: 22 RILTQ-GPIPRVQIARRTGLSQAAVTKAVAPLIEAGFVTDEPVAPTEGSGESQLGIGRPV 80 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH---ALLNAI 133 + + IGV++ DL++ + H PL + + +T+ L + Sbjct: 81 SPLTVLADSVSVIGVKVTPTGLIGVTTDLTAGIRTVRHSPLRDSSTETVIPRIVELAREL 140 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 F+D LI I V + G VD G + P + L L E V Sbjct: 141 MDFLDDQANGAGPLIGIGVAVSGDVDAAHGVVRDSPFMGWREVPLAATLTEELGAPVVVT 200 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D+R+L +AEH+FG D + +V + G G G+ NG + G G GE+GH+ + P Sbjct: 201 NDVRALTVAEHWFGVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLPLAPG 260 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 C CG GC+ET+A++ AI R + R LD + + A+ GD A E Sbjct: 261 ELICTCGRRGCVETVASSDAILAR-----TRETTGRPELD---LAGAIELAHAGDEHARE 312 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 + G +G +A +NL P+ +VIAGE + + + A A + Sbjct: 313 AFDQAGEVIGSALAAMVNLVGPELVVIAGEGVADYDLYEQRMRRAFSAHAFGAAGDCRLM 372 Query: 374 VRSELDHRSAIGAFALVKRAMLNG 397 +RS A GA A V R+ + G Sbjct: 373 LRSHTFDDWARGAAATVIRSYVRG 396 >UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F498_ACIC5 Length = 402 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 179/378 (47%), Gaps = 14/378 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 +A++ + + +++N + +I PISR +A S L ++V++I QLIE I+E Sbjct: 8 RAELASSETARRINRDILLEIIRARQPISRADLARVSGLQRSTVSQIIEQLIEELWIREG 67 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 GRR +V + + L A I + DL+ +VL+ L + + Sbjct: 68 AVARLPRGRRPTMLVL-NEDVVVLTADLHPRKAAIAVIDLNGRVLSHAELSLSHDPAK-V 125 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 A+L + + ++ K + V LPG VD + ++ + P++ ++ L +AL + Sbjct: 126 ATAILECMRRLRQAHPEK--SFRGVGVSLPGRVDSQTQRLIFAPNLHWPDFDLRQALAKG 183 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 ++ + + + +E +FG Q ++++L+ V G G GI++NG++ G+NG GE Sbjct: 184 LRMPVEMENAANACLTSELWFGRMQGVQNAVLITVSEGIGGGILANGQLVTGQNGMAGEF 243 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GHI ++P G RC CG GC ET A+ A + G R+ D + A Sbjct: 244 GHISLDPRGPRCGCGQRGCWETFASCKAALRHYQE--SSGASRRIAYQDL----LALGAE 297 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 K + E R +G+ + + I +P+ ++IAGE+T A ++ PA+ + Q L Sbjct: 298 KNPHAVGALTEQA-RQIGRGLRLVIASLSPELVLIAGEVTSAWNLVAPALRKEMEAQWLG 356 Query: 366 AFRTNLPVVRSELDHRSA 383 +P + D +A Sbjct: 357 G---TMPRIEPTFDSDAA 371 >UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifidobacteriaceae RepID=B3DR20_BIFLD Length = 389 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/343 (28%), Positives = 165/343 (48%), Gaps = 20/343 (5%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ N A + I ++G ++++++AE + L+ A+V+ + QL++ ++ + GR Sbjct: 12 LREANRANLLASIHKFGAMTQVELAEVTGLSTATVSTLVHQLVDEDQLET--KSTVRNGR 69 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHALLNA 132 RA + +G+ + R T+++ D S ++AE PLP + TLE A+L Sbjct: 70 RATLVTLARHQGLGVGLWIARRHLTLSIVDFSKSIIAEHTLPLPLGHKADTTLERAML-L 128 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE---ALEERFKVT 189 I + + S + EL+ I V + V I +P I + W V+ L F V Sbjct: 129 INETLSSIDAEASELVGIGVAVAAPVATSDHTI-AIPGI-LPGWDGVDITSPLRTAFNVP 186 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 +V +D A E G + + + + G GAGI+ NG I G G GEIGHIQ Sbjct: 187 VYVDNDANFAAYGESRMGVAAGKRNFVYISASDGVGAGIVINGEIMHGVTGLAGEIGHIQ 246 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 V+PLG C CGN GCL+T+ A E R++ LL + + LDD + AN+GD Sbjct: 247 VDPLGAICSCGNRGCLDTVVA----ENRLVQLLSVTH-GNMTLDD-----LVSFANEGDP 296 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLL 352 +I +G+ A +P+ IV+ G++ V + Sbjct: 297 GCRRIIADAAVRIGQVAADLCISVDPEVIVLGGKLAMTGDVFI 339 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 161/331 (48%), Gaps = 6/331 (1%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 V+ N A+V + + GPISR IA ++ ++ A+ + QL+E G++ E Q S GGR Sbjct: 11 VRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLEEGVLGEAGQMPSNGGR 70 Query: 75 RAISIVTETRNFHAI-GVRLGRHDATITLFDLS--SKVLAEEHYPLPERTQQTLEHALLN 131 A S+ + A+ GV LG + LFDL+ +L + E+ + + + Sbjct: 71 PA-SLTGINPGYGAVVGVDLGETAVRLELFDLALQRTLLVDTPVRAGEQGAEAIAELIAA 129 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + + + L+ + V +PG+V+ + + P + E L LE+R + Sbjct: 130 GVERLLSESGVARERLLGLGVGVPGIVEDSGTSLVHAPSMGWEGAPLAALLEQRTGLPAT 189 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V + ++L AE +FGA+ + +D ++ + G GA ++ G ++ G + + GE GH + Sbjct: 190 VSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGASASAGEWGHTTIV 249 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 G+ C CG GCLE AI +R + G + ++ I+ + AA G A Sbjct: 250 LDGDTCRCGAHGCLEAYVGAPAIVRRWAAV--SGEATAGLGEEEVIEQLAVAAEAGGEQA 307 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAG 342 EV+ R+LG ++ +NL NP +IVI G Sbjct: 308 LEVLRETARYLGAGVSDLVNLVNPDRIVIGG 338 >UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepID=A4WVU3_RHOS5 Length = 425 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 18/331 (5%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVT- 81 V+ + G +R+Q+A ++PASVT I +LIE GL++EV + R +V Sbjct: 35 VFERVRAAGLTARVQVARDLGVSPASVTTIVSELIEAGLVEEVATRRGGESGRGRPVVAL 94 Query: 82 --ETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA-LLNAIAQFID 138 +G+++ D + + D + ++LAE H ER L A LL + +D Sbjct: 95 GVRGAAHRVVGLKISDRDLSAVVMDFAGRLLAEHHE---ERRPVALAPASLLAVLETLLD 151 Query: 139 SYQRKL----RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 K +EL A+ + LPG VD G++ + + + L ER + V + Sbjct: 152 RVTAKAGLARQELAAVGIGLPGYVDSTGGRVLWSSILAERDVPLGRLATERLGLPVQVDN 211 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 D A+AE +FGA + D ++V + G G G+++N RIF G G E+GH +V+ G Sbjct: 212 DANLCAMAELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIFRGARGIGMELGHTKVQLDG 271 Query: 255 ERCHCGNFGCLETIAANAAIEQR---VLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 C CG GCLE A+ A+ + LN + QS L ++++ A G+ A Sbjct: 272 ALCRCGQRGCLEAYVADYALAREATTALNWTHRESQSMAIL----LESLHDHAKAGNQAA 327 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAG 342 + GR+L +A +NL +P I++AG Sbjct: 328 RSIFRRAGRYLAVGLANIVNLVDPPLIILAG 358 >UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillus sp. B14905 RepID=A3I7X3_9BACI Length = 383 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/339 (27%), Positives = 166/339 (48%), Gaps = 23/339 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ N V I Q PISRIQ+++ ++++P ++T+I ++L G I E + + GR Sbjct: 9 MRRQNKYIVLDAIRQMAPISRIQLSKYTKMSPTTITRIVQELEAEGFILEGVSEETAIGR 68 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA--EEHYPLPERTQQTLEHALLNA 132 R I + IG+ + + + D K++A E + R ++ + H L N+ Sbjct: 69 RPTLIHMREDALYTIGIEIDCFTIRLGILDFLGKLIAFQEIKCSIKHRYEEAI-HLLKNS 127 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 IA + YQ +L+ I + +PG+++ + G I ++ EN + E L F V Sbjct: 128 IATIMSEYQIAQEKLLGIGIGVPGVINNEEGIIVSSEQLKWENCRIGEDLNGVFDCEVIV 187 Query: 193 GHDIRSLALAEH---YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 ++++ +AE Y +C ILV + G GA I+ NG ++ G GEI HI Sbjct: 188 DNELKMQIIAEIGDIYTPLYSNC---ILVGMGTGVGASILLNGEVYRGIQNKAGEISHIT 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP--LDDCTIKTICKAANKG 307 + P GE CHCG GCL + E +LN R P L +I+ + + ++G Sbjct: 245 INPFGEMCHCGKRGCLSMYIS----EMTLLN--------RTPKNLTIQSIEEVLQCVDRG 292 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE 346 + A ++ + V +L I + L+ P+ ++++GEI E Sbjct: 293 EQWAVDIQQDVATYLAIAINNLVCLYEPEAVIVSGEIIE 331 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 113/379 (29%), Positives = 192/379 (50%), Gaps = 25/379 (6%) Query: 26 LIDQY---GPISRIQIAEQSQLAPASVTKITRQLIERGLI--KEVDQQASTGGRRAISIV 80 L+D+ G ISR ++A ++ L+ ++V+ + L +GL+ +EVD GGR + + Sbjct: 21 LVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLVAEREVDGAGPQGGRPPVLLS 80 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA---QFI 137 E A+G+ G+ + + DL+ VLA+ P+ T+Q+ A+A Q + Sbjct: 81 LERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPM--ETEQSAPEGFEVAVALVHQAL 138 Query: 138 DSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW-GLV--EALEERFKVTCFVGH 194 + ++I + +PG +D +G++ + W GL E + R + V + Sbjct: 139 ADAGVEQTDVIGAGMGVPGPIDISTGEVGSSAILP--GWIGLRPREDMSARLGLAVRVEN 196 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 D ALAE +GA +D +D + V+V G G+G++ G+++ G G GEIGH V+ G Sbjct: 197 DANLGALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGAGGIAGEIGHSMVDERG 256 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CGN GCLETIA+ I + LL+ + D TI+ + A +GD + V Sbjct: 257 AVCRCGNRGCLETIASTRQIRE----LLRPARGA-----DLTIEEVIAHAREGDRASRRV 307 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 I R +G +A N+ NP K+++ G+++ A VLL + ++ A+ A ++ +V Sbjct: 308 IGDAARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPLRDEVSRHAVPAAGGHVEIV 367 Query: 375 RSELDHRSAI-GAFALVKR 392 L R+ + GA ALV R Sbjct: 368 PGVLGRRAEVLGAAALVLR 386 >UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788127 Length = 390 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 105/378 (27%), Positives = 184/378 (48%), Gaps = 13/378 (3%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ LVK++N++ + I Q+ P+SR ++++ + L A+V+ + ++L L++E+ Sbjct: 6 GDQALVKKINTSIILDTIRQHAPVSRAKVSKLTGLNKATVSNLVQELCSNHLVQEIGPGE 65 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 S+GGR+ ++ + +AIGV L T L DL ++LAEE L +++ + Sbjct: 66 SSGGRKPQLLLFNGQAGYAIGVELRVKQITAVLTDLEGRILAEEDTALEAHGVESVTRLM 125 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + I + +I I V +PG+VD D G + + P++ + L E LE + Sbjct: 126 VGMIHGLMRQAPPSPYGIIGIGVGVPGMVDGD-GTVLFAPNLGWDMVPLQEQLELELGLP 184 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 + ++ + A E FGA +D + + G G+GII NG ++ G G GE GH+ Sbjct: 185 VTIDNEANAGAQGELRFGAGRDARHLLYISAGSGIGSGIIINGELYKGARGYAGESGHMS 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 +E G C CGN GC E A+ + + G + +P + + A G Sbjct: 245 IEAEGRECSCGNRGCWELYASEKSYD---------GKDAVLPSRRTS--ELVHHAELGHK 293 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 E +GR+LG I +N FNPQ ++I G +++A + ++ + + L R Sbjct: 294 DTIRHFEELGRYLGIGITNLVNGFNPQSVIIGGPLSDARAWIEETLQQVVAQRTLPYHRE 353 Query: 370 NLPVVRSELDHRSA-IGA 386 + + +EL RS IGA Sbjct: 354 RMEIRFAELGSRSTMIGA 371 >UniRef50_C7IE75 ROK family protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IE75_9CLOT Length = 412 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/353 (28%), Positives = 172/353 (48%), Gaps = 25/353 (7%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE--VDQQASTG 72 VK N +++ LI + G ISR +IA + L PA++T IT LI G++ E V+Q + Sbjct: 16 VKIKNRSSILYLIYRSGGISRKEIANKLNLTPAAITLITTDLINEGILVESAVEQNNNRK 75 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE----------HYPLPERTQ 122 GR+ I + + + IG+ + + I DL++ V+ E+ + ++ Sbjct: 76 GRKEILLDINRKKYATIGIYISTNKFQILCMDLNNIVIFEDTVFTADCHKKSSAILDKVC 135 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 LEH L+ + D + R ++ + V + G+V+ +G ++ +N +VE + Sbjct: 136 TILEHNLI-----YYDIV--RTRTILGVGVSVKGIVNSRAGVSINSYNVWEDNVNVVEYI 188 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 ++R KV + ++I SLA E +F + +D + ++ G GA + + N Sbjct: 189 QKRMKVPAILTNNICSLAHGESFFANMEHPKDMLFIKYGPGVGAARVFYQDTLSVYDFNA 248 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCT 296 ++GH +P G C CGN GCLETIA AIE+ N+L + ++ Sbjct: 249 IQLGHTIADPNGAICECGNRGCLETIAGYDAIERNAANILSNKLTPYLFSYTDGNTENIN 308 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 IK I KA GD L ++++ L I A+ LF+P+ I++ GE+ E +K Sbjct: 309 IKNIIKAYYDGDKLIEDILDRSIYFLSIAIKNAMCLFDPKSIILYGELFENEK 361 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 10/353 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ L+K++N + + I + I R IA+ + L+PA+VTKIT +LI RG++ E Sbjct: 12 GSKHLIKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVLEAGSAE 71 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 S+GGR+ I + + +GV++G + + D + ++ T+ + + Sbjct: 72 SSGGRKPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIVESARCDTESSDPGTIVNVI 131 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 N + Q K L+ I + + G+VD G + + + + L+E FK Sbjct: 132 KNCWEK---CRQEKQSILLGIGIAVSGVVDSKEGIVRDSFLLGWRDVPIASLLKEVFKCE 188 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D+ S A++ + G ++D +++++ + G G +I +G+I + G VGEIGH+ Sbjct: 189 VLVMNDVDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKIHNAK-GGVGEIGHMT 247 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNL-----LKQGYQSRVPLDDCTIKTICKAA 304 V G +C CG+ GCLE A+ A+ +++ ++ LK+ Y+S + I+ + +A Sbjct: 248 VVKDGAKCTCGSNGCLEAEASFGALAKKISSITESKKLKELYKSVKQSESSEIEYLREAL 307 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIE 356 + + V E +G + IN+ P ++I GE E +K L AI+ Sbjct: 308 KRDRKAFNHVFEEYAVLVGIALKNIINMLAPDYLLIGGEALEFQEKFLNKAIQ 360 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 168/345 (48%), Gaps = 22/345 (6%) Query: 34 SRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHA----- 88 SR +AEQ + + + L+E+GL+ E Q S+GGRRA E HA Sbjct: 14 SRHAMAEQLGFSKSKANALIAGLVEQGLLAEAGLQRSSGGRRA-----ENLQLHAGLGVL 68 Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA-QFIDSYQRKLREL 147 +G+ +G + + VLA+ P R + A + + + + + + Sbjct: 69 VGIDIGATSLDVAVLRPDLSVLAQHDEPADVREGPAVVLARVRVLMRELLARCGHGPKNV 128 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQV-ENWGLVEALEERFKVTCFVGHDIRSLALAEHYF 206 + I + +PG V+ + G++ P + +++ + + L E + FV +D+ +AL E + Sbjct: 129 LGIGIGVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLREDYAAPVFVDNDVNLMALGELWR 188 Query: 207 GASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLE 266 + + +++++ G G GI+ +G ++ G G+ G++GHI V+ G RCHCGN GC+E Sbjct: 189 -LKRSLNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAGDVGHICVDQDGPRCHCGNVGCVE 247 Query: 267 TIAANAAIEQRVLNLLKQGYQSRVPLDDC-------TIKTICKAANKGDSLASEVIEYVG 319 +AA AI + + + G + L +C + +A+ GD+ A+ +I+ G Sbjct: 248 AMAAGPAITRMAVQAAEAGESAM--LAECLRVHGRIDAIDVGQASRAGDTAANGIIQRAG 305 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +G+ +A +N FNP + I G IT + L A+ + ++L Sbjct: 306 NLIGQMLASVVNFFNPSHVFIGGGITRIGPLFLAAVRQSVYQRSL 350 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/325 (26%), Positives = 168/325 (51%), Gaps = 5/325 (1%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA--STGGRRAISIV 80 ++ L+ G I+R +IA ++P SVT +T +LI G ++EV++ + ++ GR +++ Sbjct: 37 IFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPVALE 96 Query: 81 TETRNFHAIGVRLGR--HDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFID 138 + IGV+L H AT+T F ++ A + +++ L I + Sbjct: 97 LVPDALYVIGVKLSDELHTATLTDFGGNALASASQITTADKKSADELLTETEAIIRKVCK 156 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRS 198 S + +++ AI V + G+V+ ++G + + P ++ + L + FK + +D Sbjct: 157 SAKISQKKISAIGVGISGIVNYETGVVAWSPLLEELDTPLGDIFSTYFKTPVCIDNDANV 216 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCH 258 L LAE +FGA + + ++ + G G G +S+ R+F G + E+GH +V+ G C Sbjct: 217 LTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDGALCR 276 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYV 318 CG GCLE A+ A+ + L R L+D +K++ + A GD + ++ + Sbjct: 277 CGQRGCLEAYLADYALAREASTALITPSSKRQDLNDY-LKSLYEMAKLGDQASLKIFKRA 335 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGE 343 GR+L ++ I+LF+P+ I+++G+ Sbjct: 336 GRYLAVALSNIIHLFDPKLIILSGK 360 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/386 (26%), Positives = 188/386 (48%), Gaps = 28/386 (7%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 +Q N V R + ++ +R ++A + L+ +V+ +T +L++ G++ + + GR Sbjct: 12 RQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHEDTQPRTGRP 71 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA--- 132 + + + +A+G+ +G + + DLS ++L E R+ ++HA + + Sbjct: 72 PVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHE------RSAADVDHAPVESFDL 125 Query: 133 ----IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA---LEER 185 + + L +I + + L VD +G + + I + +WG V+ +E R Sbjct: 126 AGELVHGALGQAGVPLDRVIGVGMALAAPVDRATGTV-FADGI-LPSWGRVQPAIEMEAR 183 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + V +D AL EH FGA +D + + VR+ G G G++ GR + G +G GE+ Sbjct: 184 LDLPVMVHNDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGEL 243 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH++V P G C CGN GCLET+A++ A+ + LL V +++ + + Sbjct: 244 GHVRVAPEGLICRCGNRGCLETVASSTAVAR----LLAHSRDEPV-----SVERLLELVA 294 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 GD A + G+ +G+ +A +NLFNP+ I++ G++ LL + + I+ A+ Sbjct: 295 DGDRGARRAVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPLRTAIDEYAVA 354 Query: 366 AFRTNLPVVRSEL-DHRSAIGAFALV 390 + V L D +GA ALV Sbjct: 355 PAAGAVTVSLGALGDKAEVLGAVALV 380 >UniRef50_D2BD51 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangineae RepID=D2BD51_STRRD Length = 401 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 167/349 (47%), Gaps = 16/349 (4%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 V+ N A V R + ++ P SR IA + L A+V+ + LI+R L++E + GR Sbjct: 16 VRATNLAVVLRFVREHAPCSRADIAASTGLNKATVSSLVADLIDRRLVRETGLTENRVGR 75 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT--QQTLEHALLNA 132 A +V + + AIGV + T DLS + L T + Sbjct: 76 PATMLVLDGSPYAAIGVEVNVDYVTAVAVDLSGERLLSWRRSFSGATITAAQAVATVAAI 135 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF- 191 + + ++ ++ R+++ ++V +PGLV D G + P++ + L L + + F Sbjct: 136 VRRVVNRMAKEERQVLGLAVGVPGLVGTD-GTVRIAPNLGWRDADLCGDLTKALRDPGFP 194 Query: 192 --VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D ALAEH FG + + + G GAG++ +GR+ G G GEIGHIQ Sbjct: 195 VQVDNDANLAALAEHRFGPRAGTANLVYLTGEIGVGAGVVLDGRLRRGGQGYGGEIGHIQ 254 Query: 250 VEPLGERCHCGNFGCLETIAA-NAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++PLG C CG GCLE +A A +E L+ + + LD+ + + A D Sbjct: 255 LDPLGAECRCGRLGCLEAVAGIGAVLEHAALS----PAEVEIELDE-----VVRLARAAD 305 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 V+ VG +LGK +A+ NL NP+ +++ G LLPA+E+ Sbjct: 306 PRILAVLATVGHNLGKGVAVIANLLNPEVVILGGYYVPLAPWLLPAVEA 354 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/402 (28%), Positives = 192/402 (47%), Gaps = 42/402 (10%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 PG Q+ + +Q N + + GP+++ +++ + L+ A+V+ + + + + GL+ Sbjct: 57 PGSQSAL------RQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGLV 110 Query: 63 KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 +S GRRA S+ + A+G+ +GR + + L +V+AE LP Sbjct: 111 STAPTTSS--GRRATSVRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLP---- 164 Query: 123 QTLEHALLNAIAQFIDSYQRKLRE-------LIAISVILPGLVDPDSGKIHYMPHIQ--- 172 L H + + D Q L + ++ V +PG +D +G + IQ Sbjct: 165 --LGHLAVEGVKAAADLLQGLLHDAGLPASAVVGAGVGIPGPIDSRTGTV-----IQGAI 217 Query: 173 VENW---GLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGII 229 + W ++E LE+ KV +V + ALA+ +G ED + V++ G GAG+I Sbjct: 218 LPEWVGINILEMLEDALKVPVYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLI 277 Query: 230 SNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR 289 G + G G GEIGH + G C CGN GCLET+A+ A + + LL +G + Sbjct: 278 LGGSPYYGNIGVTGEIGHATISEQGLICRCGNRGCLETVASTAIM----IELLSRGAPAP 333 Query: 290 VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 + +D I + A + DS VI+ G+ +G+ IA NL NP+ IV+ G + E + Sbjct: 334 ITTED-----IIRLAREKDSATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGE 388 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALV 390 VLL I + A+ +V S + +R+ A+G ALV Sbjct: 389 VLLEPIRRGLIRHAVPVVGETTHLVMSSMGNRAEALGGAALV 430 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 109/394 (27%), Positives = 183/394 (46%), Gaps = 30/394 (7%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 +++L+ P +R ++A + A +++ L+ GL+ + +STGGR + Sbjct: 19 LFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAGEASSTGGRPPATFAFS 78 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQ----FID 138 + V LG A + + DL+S VLAE P+ + +L +AQ + Sbjct: 79 PAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDV---ILGWVAQTGEELVL 135 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE---ALEERFKVTCFVGHD 195 S R L +L+++ V LPG V+ +G+ P + W V+ L R + V +D Sbjct: 136 STGRTLDDLVSVGVGLPGPVEHSTGRPINPPIMPA--WDDVDVPGGLSARLGASVLVDND 193 Query: 196 IRSLALAEH---YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 + +AL EH + G S D + V+V G GAGIIS+G + G G G+IGH+ V Sbjct: 194 VNIMALGEHRTEWPGVS----DLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHVAVSD 249 Query: 253 LGE-RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 E C CGN GCLE +A+ A+ + L G + D + GD A Sbjct: 250 RSEVPCRCGNLGCLEAVASGQAVAAQ---LAATGLAATSSND------VVALVRAGDLYA 300 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 S + GR +G +A ++L NP IV+ G + + + L+ I + ++L +L Sbjct: 301 SRAVRQAGRDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGIREVVYRRSLPLATQHL 360 Query: 372 PVVRSELDHRSAI-GAFALVKRAMLNGILLQHLL 404 +V S +R+ + GA A+ +L+ + L+ Sbjct: 361 RIVASRTGNRAGVLGASAMAVDHVLSSAAIDALI 394 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 174/377 (46%), Gaps = 23/377 (6%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 ++ LI +R ++A + L A+V++ L+E GL+ E + STGGR + + Sbjct: 12 IFGLIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLVVETKEGVSTGGRPPMVLGFN 71 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL---LNAIAQFIDS 139 + LG + + DL + L E P Q + L + + ++ Sbjct: 72 KDAGVVLAADLGATHCRLAVADLGGRPLVE--LPADLDIAQGPDAVLGWVQDRFEELLEE 129 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV---EALEERFK-VTCFVGHD 195 R E+ I V +PG VD G+ P + W V E ERF V V +D Sbjct: 130 AGRSREEVWGIGVGVPGPVDFARGQAVSPPIMP--GWDRVPIPERFRERFGGVPVLVDND 187 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 + +AL EH S D E + V+V G G GI++ GRI G G G+IGHI++ E Sbjct: 188 VNIMALGEHRVNWS-DVEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEE 246 Query: 256 R-CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CGN C+E +A A+ +++ L GY + + + G+ A+ + Sbjct: 247 TVCRCGNVACVEAVAGGWALAKQLSGL---GYPA------TGSRDVVGLVRAGNPAAARL 297 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 + G +G+ +A +N FNP I+I G++ A + L I S + ++L +L +V Sbjct: 298 VRTAGELIGEVLASLVNFFNPAVIIIGGDLAHAHEQLFAGIRSVVYQRSLPLATRHLQIV 357 Query: 375 RSELDHRSAI-GAFALV 390 SELD R+ I GA A+V Sbjct: 358 PSELDDRAGIHGAAAMV 374 >UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K724_THENN Length = 388 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 177/365 (48%), Gaps = 28/365 (7%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA-STGG 73 +K LN + ++I + P+SR I+E + L P+SVT++T++LI+ G I+E+ ++ G Sbjct: 18 IKILNKKTILKVIHENHPLSRSDISEITGLTPSSVTRLTKELIDEGYIREIGTMGKNSPG 77 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 RR + + + F ++ +G + T + +V + P+ ++ + A Sbjct: 78 RRRVLLDLKKEAFLSLVFDIGVNITTYGIGFFDGEVELRGTFNTPKNPEEFFKTAR---- 133 Query: 134 AQFIDSYQRKLRE--LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + Y+R RE + IS +PG+VD + KI P++ EN + + LE V Sbjct: 134 ----EIYERISREHSITRISFSVPGMVDLEEKKILLAPNLGWENVNIEDLLE--VDVPVL 187 Query: 192 VGHDIRSLALAEHYFGAS-QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 ++ LAE Y ++ E+++ + + G G G++ +G+IF G + GE GH+ V Sbjct: 188 ADNEANLSMLAEKYHSEDLRNVEEAVFIIIREGVGTGLMVDGKIFRGPSFTAGEAGHMTV 247 Query: 251 EPLGER-CHCGNFGCLETIAA-NAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 +R CHC N+GC E +++ N AIEQ L +G S I+ K D Sbjct: 248 NMYSDRQCHCSNWGCWELVSSINWAIEQYGKEL--EGRNS--------IEKFQALKQKND 297 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A V+ ++ I +N+ NP+ +++ GE+ + IE + +ALKA Sbjct: 298 --AKRVLMRFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFFSIIEDFVRQRALKAAV 355 Query: 369 TNLPV 373 NL + Sbjct: 356 RNLKI 360 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 176/368 (47%), Gaps = 16/368 (4%) Query: 34 SRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRL 93 SR ++ + + +V+ QLI L+ E + STGGR + +R + V L Sbjct: 24 SRAELVALTGASRNTVSARVDQLIAANLLAEGGRGWSTGGRPPTLLQFNSRAGCVLAVDL 83 Query: 94 GRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFI-DSYQRKLRELIAISV 152 G + + DLS++VLA +P+ A ++ +AQ + + ++ A+ + Sbjct: 84 GVTSVDVAVTDLSAQVLATVGHPIDIADGPRPVLAEVDRLAQLVLADAGLEPADVCAVGI 143 Query: 153 ILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDC 212 +PG V+ SG+ + P + + + + R++ +V +D+ +AL E GA+ Sbjct: 144 GVPGPVEHSSGRPSHPPIMPGWHDFPIPSAFGRYECPVYVDNDVNVMALGE--MGAAGSV 201 Query: 213 EDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER---CHCGNFGCLETIA 269 +D ++V+V G G G+I +GR++ G G+ G+IGHI V R C CG CLE +A Sbjct: 202 QDVLVVKVGTGIGCGVIVDGRVYRGAQGSAGDIGHIHVTTPDGRLVTCRCGQENCLEALA 261 Query: 270 ANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIA 329 A LL+ + +P+ T + + + A +GD A E++ GR +G +A Sbjct: 262 GGGA-------LLRDAVAAGLPVS--TTREVVERAAQGDGAAIELVREAGRTIGTVLAAL 312 Query: 330 INLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA-IGAFA 388 +N FNP +IV+ G + +A LL I + +++ L + SE S +GA Sbjct: 313 VNFFNPHRIVVTGGVAQAGVPLLAGIRESVYRRSMPLAARALEITVSEAPELSGRVGAAL 372 Query: 389 LVKRAMLN 396 + L+ Sbjct: 373 MAIEGFLD 380 >UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobacterium dentium RepID=D2Q6V0_9BIFI Length = 390 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 105/394 (26%), Positives = 183/394 (46%), Gaps = 26/394 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ N A + I ++G +++I++AE + L+ +V+ QL+E G ++ GR Sbjct: 12 LRRANKANLLESIHKFGAMTQIELAEITGLSTGTVSTQVHQLVEEGKLET--HNTIRNGR 69 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHALLNA 132 RA + +G+ + R D + + D S ++AE PLP + TLE A+ Sbjct: 70 RATLVALSHDQGLGVGLSITRRDLFLVIIDYSKDIIAEHRLPLPPKHKADTTLERAI-RL 128 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE---ALEERFKVT 189 I + +++ E++ I V L VD + + +P I + W ++ L F V Sbjct: 129 INETLENAGTDAGEIVGIGVALGAPVDFHA-QTAAIPGI-LPGWDGIDIHTPLTTAFHVP 186 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D + A+ E G + ++ + + + G G+GI+ NG I G G GEIGHIQ Sbjct: 187 VMVDNDANAAAICEARMGVALGKQNFVYIGTNDGVGSGIMVNGDIMHGVTGLAGEIGHIQ 246 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 V+PLG C CGN GCL TI E R+++LL V + T++ + + AN GD Sbjct: 247 VDPLGSICSCGNRGCLNTIVD----EARLVSLLS------VTHGNMTMEDLVQTANAGDP 296 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 VI +G + +P+ +V+ G + + + + T Sbjct: 297 GCRRVIADAAVRIGTVASDLCISVDPEMVVVGGSLAMSGDTFIEPFSETLQRLLFPNALT 356 Query: 370 NLPVVRSEL-DHRSAIGAFALV-----KRAMLNG 397 + V+ ++ D SA+GA +V K+ +L G Sbjct: 357 PIQVLAAQYPDSGSALGAAIMVIELAEKKKLLQG 390 >UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterales RepID=B0K1L9_THEPX Length = 400 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 112/383 (29%), Positives = 188/383 (49%), Gaps = 6/383 (1%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 LVKQ+N + V I + G ISR IA + L ++V+ + +LI G ++E AS GG Sbjct: 8 LVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGPGASKGG 67 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNA 132 R+ I + IG+ L + I L DL + V+ E+ + +QQ + L+ Sbjct: 68 RKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAIIERLIEL 127 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I + I + +R ++ I + +PG+VD G I P+++ ++ L E +E +FK+ + Sbjct: 128 IDEAILNAPNTIRGILGIGIGVPGIVDYKKGSILMAPNLKWQDVPLKEIIENKFKIKVHI 187 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 ++ A+ E +FG + + V G G GII NG ++ G G GE+GH+ + Sbjct: 188 DNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEMGHMTINI 247 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQG----YQSRVPLDDCTIKTICKAANKGD 308 +C CGN GC E A+ A+ + L G Y ++ + + I A KG Sbjct: 248 HDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDIINYAQKGS 307 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 +A E ++ +GR LG I IN FNP+ ++I ++ A ++L + + + L Sbjct: 308 EIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEKKCLVYRY 367 Query: 369 TNLPVVRSELD-HRSAIGAFALV 390 + + S+L H AIGA +LV Sbjct: 368 YKVKIKTSKLQFHAGAIGAVSLV 390 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/329 (28%), Positives = 154/329 (46%), Gaps = 22/329 (6%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG---GRRAISI 79 V + I G ISR IA +PA+VT L++ GLI+E + S GR + + Sbjct: 21 VLQCIRSAGTISRTDIARALDSSPATVTSACGALLDAGLIREERRMPSENVQRGRPRVML 80 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL------PERTQQTLEHALLNAI 133 F G+++ R + + D + PL P+ Q + AL A Sbjct: 81 QINGEAFAVAGLKVAREAIVVMIVDFRGDEIGSFVSPLEASCMDPDGLVQEVRRALDAAC 140 Query: 134 AQF-IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 A+ +D+ + + +S+ +PG V+ ++G +H+ + N + F+ Sbjct: 141 ARHGLDTAR-----IAGLSLGIPGFVNGETGFMHWSSSVTERNVDFAPLFRKHLPCPTFL 195 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D +A AEH FGA + + ++V + G G GII NG ++ G G E+GH++V+ Sbjct: 196 DNDANLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGELYRGERGCGAELGHMKVQF 255 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G C CG GCLE + A+ + G QS +I+ I AA GD LA Sbjct: 256 GGALCQCGQRGCLEAYVGDYALVRDT----STGQQSDAAK---SIQDILHAARNGDRLAR 308 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIA 341 EV++ + LG +A +NLF+P+ IV+A Sbjct: 309 EVLDRASQILGVALANLVNLFDPEHIVLA 337 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 152/308 (49%), Gaps = 14/308 (4%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQTLEHALLNAIAQFIDSYQRKLR 145 +AIG+ +G I L +V + P + + + + AI + + Sbjct: 3 YAIGIDIGGTKTAIGLIGTDGEVRTKVSLPTDQTVGPEVMVDRMAAAIQDILTAQGIAES 62 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 EL+ I V PG ++ GKI P+++ N+ +V++L+ F + + +D + ALAE Sbjct: 63 ELLGIGVGAPGPLNTKEGKIAEPPNLRGWWNFPIVDSLKRYFSLPIRLENDATAAALAEK 122 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + GA++D E + + + G GAGI S+G++ G +GN G++GHI V+P C CG GC Sbjct: 123 WLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGNAGDVGHIVVDPSVGTCVCGQKGC 182 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 E +A+ A+ ++ LL + S+ D A G + E++ V ++G Sbjct: 183 WEFVASGTAVARQASELLGREVSSKEAFD---------LAAAGQPVIQELVAKVFENIGV 233 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA- 383 IN F+P+K+VI G +++ L A+ ++ AL P+V + L H+ A Sbjct: 234 GCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVSKYALNPSGRQTPIVPAAL-HQDAG 292 Query: 384 -IGAFALV 390 IGA AL+ Sbjct: 293 LIGAAALI 300 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 159/313 (50%), Gaps = 12/313 (3%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRK--- 143 + +GV LG L D K++A++ P R + E + N ++ Q K Sbjct: 4 YYVGVDLGGTKILTALADARGKIVAKKKLPTEARKGE--EKVIQNIVSSIDAVLQEKGLS 61 Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAE 203 ++I + V PG ++ G I+ P++ N + + LEE + + +D + AL E Sbjct: 62 REDVITLGVGSPGPLNTQEGIIYLAPNLGWRNVHIKDILEEETGIPVILENDANAAALGE 121 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFG 263 +FGA QD ++ I + V G G GII N +IF G N GE+GH+ +EP G C CGN G Sbjct: 122 KWFGAGQDVDNLIYITVSTGIGGGIIINKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRG 181 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVIEY 317 C E +A+ AI + +K+ + + + I +AA +GD +A ++ + Sbjct: 182 CFEAVASGTAINKMGREAVKENKATLLMELSGGDPEKIDGSLIARAARQGDEVARKIWDK 241 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 G +LG +A +N+FNP+ I++ G + A +++ ++ + AL++ ++ + ++E Sbjct: 242 AGYYLGIGLANLLNIFNPEMIILGGGVMNAGDLIMEPMKKSLKDHALESAFNSVEIRQAE 301 Query: 378 LDHRSA-IGAFAL 389 L + + IGA A+ Sbjct: 302 LGNDTGVIGAVAV 314 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 174/359 (48%), Gaps = 11/359 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + Q + ++V+ +N V L+ PISR +A S L ++++ I QLIE + E Sbjct: 7 RPQGASSEVVRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVLEG 66 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 GRR + + + IGV + T+ L D + K ++E P + L Sbjct: 67 PTGRLPRGRRP-TFLRLNDDRVIIGVDIRPIQTTVALADANGKFTSQEVMSTPGDPKLAL 125 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 L+ AI + + + K+ E I IS LPG D S ++ + P+++ + + + + E+ Sbjct: 126 TQ-LIAAIKRIKSTCRGKMIEGIGIS--LPGRFDHSSNRLVFAPNLKWTDIDIRDPIVEQ 182 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + + + + LAE +F +C + ++V V G G G+++NG + G +G GE Sbjct: 183 TGLDVELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGMAGEF 242 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ ++P G C CG+ GC E A+N A L+ ++ + + A+ Sbjct: 243 GHVPLDPTGPTCGCGSRGCWEIFASNRAA-------LRYYLETGSTETGLSFTDLLSRAD 295 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +GDS A + ++ + +LG+ + + + P++IV+ G++T + + IE+ I Q L Sbjct: 296 QGDSRAEKALDMMAHYLGRGMRMIVAGLAPERIVVVGDLTRSWQRFGSVIEAEIQAQVL 354 >UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida fusca YX RepID=Q47PH9_THEFY Length = 417 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 118/406 (29%), Positives = 183/406 (45%), Gaps = 32/406 (7%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE---VDQQAST 71 V++ N V R I P SR +A + L A+V+ + +LI+RGL+ E V+++ Sbjct: 14 VRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLVCETGLVNERRV- 72 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL------PERTQQTL 125 GR + + A+G+ + + DL + + H PE + L Sbjct: 73 -GRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARAAGPEECAKQL 131 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 + LL +A D R R L+ +SV +P LVD SG + P++ N+ L + L E Sbjct: 132 KTLLLETVA---DPLLRD-RPLLGVSVAIPALVDVSSGTVTNAPNLGWRNFPLQQRLTEL 187 Query: 186 FKVTCFVGHDIRS------LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 T G +R A+AE+ G D + + G GAG++ NG G + Sbjct: 188 LADTPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLMNGEPLRGAS 247 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQR-VLNLLKQGYQSRVPLDDCTIK 298 G GE+GHI + G C CG GCLE +A +I +R V +L+ +G ++ + Sbjct: 248 GFAGEVGHIPLLKDGPACACGQDGCLEALAGLDSILRRAVPDLVPEGPVRGSVVESLVAE 307 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 T+ + A GD+ A + +E G LG+ A +NL NP I++ G LLP SC Sbjct: 308 TV-RRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGYFVPLSPWLLP---SC 363 Query: 359 INTQALKAFRTNLPVVRSE-----LDHRSAIGAFALVKRAMLNGIL 399 A +F N R E L + GA AL+ A+ G+L Sbjct: 364 REAMAAYSFAPNSGNCRIEPSTLGLSAAARGGAMALID-ALDTGLL 408 >UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGR1_9MICO Length = 421 Score = 130 bits (327), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 174/358 (48%), Gaps = 7/358 (1%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-QQASTGG 73 ++ N + R + +G SR +A ++ L+ A+ + + L ERGL++E + +A + G Sbjct: 27 MRAANMGLILRQLQLHGGRSRAGLATETGLSKATTSSLIADLAERGLVREGEIHRAGSVG 86 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEHALLN 131 R +++ + R +G+ + +T DL+ V+ E P+ PE + + + Sbjct: 87 RPGLTVNLDGRRVAGLGLEISIDYVAVTAVDLTGNVIRESITPMDVPELAVEVVLDRVAG 146 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + ++S + ++ +V PG++D D+G + + P++ + L L ER C Sbjct: 147 IAQRMLESLRSAGHIVVGFTVAPPGVIDYDAGIVRFAPNLGWRSVALAAGLSERIGPECP 206 Query: 192 VGH---DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 H D + A+AE+ A + +D + + G GAGII+ GR+ G +G GE+GH+ Sbjct: 207 EIHLENDAKLAAVAEYGAYADSEVQDLVYLSGEVGVGAGIIAEGRLVRGWSGFSGEVGHL 266 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + P C CG GC E + + + + SR +DD ++ + + A GD Sbjct: 267 ALGPSELECSCGRRGCWELVVGLHHFLRLAAPVGDVVHDSRRSMDD-RLEILRERAASGD 325 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 E + + R L + +++ +++ NP++IV+ G + LL ++S ++ + + A Sbjct: 326 ERTLEALAAIARDLIRGLSVLVDVLNPRRIVLGGYFAPFGEQLLAPVKSALDERRMDA 383 >UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAB7_DICT6 Length = 375 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/328 (27%), Positives = 163/328 (49%), Gaps = 32/328 (9%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 N V ++ + GP SR ++A S+L ++++I +LIE+ ++ E+ + ++ GRR Sbjct: 14 NKNLVLEILIKTGPKSRAELARISKLTKTAISEIVDELIEKNILVEIGKVETSRGRRPTK 73 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFID 138 + T + + + L + + D S KV + +YP+ + + + ID Sbjct: 74 L-TINPDLKILAIDLSGLEGRSGIVDASGKVEEDFYYPIKRKED----------LFELID 122 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF-KVTCFVGHDIR 197 +K + +IAIS+ +PG+++ +G++ + N+ L E L+ER+ + ++ D Sbjct: 123 PLLKKYKNIIAISISVPGIINKYNGEVILSVGLNWRNFLLKEFLKERYPNLPIYIEKDTN 182 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE-PLGER 256 S L+E +FG + + +G G GI NG I G N GEIGH V + E Sbjct: 183 SGLLSELWFGEGKKFNILFYLLFEKGIGLGIYYNGNIIEGFNNIEGEIGHTIVNGDIAEI 242 Query: 257 CHCGNFGCLETIAANAAIEQRV--LNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CGN GCLETIA+ I+++ LL++ K+ N+GD Sbjct: 243 CWCGNKGCLETIASFPKIQEKFSDFKLLEES---------------LKSYNQGDK--DPF 285 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAG 342 +E + R+LG ++A A+++ P+ I +AG Sbjct: 286 LEEIFRYLGISLANAVHIIAPEAICVAG 313 >UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV97_9CLOT Length = 406 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/358 (23%), Positives = 171/358 (47%), Gaps = 20/358 (5%) Query: 33 ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVR 92 ISR + + + + ++V I LI G++ E D + GR+ + + + IG Sbjct: 28 ISRYDVKKMTMYSMSTVLDIIDDLIASGMVYEADCEEPRVGRKPVWLRLNPEGGYFIGAE 87 Query: 93 LGRHDATITLFDLSSKVLAE-EHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAIS 151 + D + +++ + E LP++ + + L+ I ID+ + K ++ AIS Sbjct: 88 FNAFHLHCAMLDFTGEIIYQSEEDLLPDQGKDAILALLIRHIHAAIDAVKGKPGQIFAIS 147 Query: 152 VILPGLVDPDSGKIHYMPHIQVENWGLV---EALEERFKVTCFVGHDIRSLALAEHYFGA 208 V +PG ++ D K + H ++++W V + LE+ F + C++ +++ +A A + Sbjct: 148 VGIPGYLNED--KSIALSHFRLKDWENVPVKKILEDEFHLPCYLDNNVNVMAFAYKWLRY 205 Query: 209 SQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETI 268 + DC D + V + G + N + + R G GE+GH++V P G C CG GCL + Sbjct: 206 NGDCRDFLFVSIRTGVRIVPVINNHLILSRGGLSGELGHVKVAPHGTLCSCGGIGCLNSE 265 Query: 269 AANAAIEQRVLNLLKQGYQ-SRVP---------LDDCTIKTICKAANKGDSLASEVIEYV 318 ++ +I L LK G++ R P D T++ C++A + S + +++ + Sbjct: 266 ISDLSI----LGKLKAGFEFGRFPEIMEMAGGDPDKVTLEMFCESAAQEHSDSVKLMLDL 321 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 LG+ + +A+N+ P+ +V++G++ + + I + ++ L V S Sbjct: 322 ANILGEALGMAVNILAPEVVVLSGQLAQLGEPFFQEISKVLERNVVQEIYQGLKVTAS 379 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 110/400 (27%), Positives = 191/400 (47%), Gaps = 42/400 (10%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE---VDQQASTG- 72 L + + + + +SR + + LA +V+ + LI GL++E V + + T Sbjct: 20 NLGRVRILQALTSHARLSRADLVRHTGLARTTVSSVIFDLISAGLVRESPDVRENSDTAA 79 Query: 73 ------------GRRAISIVTETRNFHAIGVRLGRHD---ATITLFDLSSKVLAEEHYPL 117 GR + + E +A+G+ +G HD A +T + + E + Sbjct: 80 AAAAGAAPGQRTGRPPLLLRLEPEAAYAVGLDVG-HDHVRAIVTDVVGTPRWDRTEALAV 138 Query: 118 PERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIH---YMPHIQVE 174 + ++ L+ A+ IA+ + +++ + + + VD +G +H MP Sbjct: 139 DDDPRRALDTAV-RLIAEAVKDTAVPPHKILGLGLGIACPVDKTTGGLHAEGIMP----- 192 Query: 175 NW-GLVEA--LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISN 231 W G A L ER + + +D + LAE FGA+++ + + VR+ G GAG++S Sbjct: 193 GWVGTRPADDLAERTGLPTQIINDANAGVLAERRFGAAREATNVVYVRLAAGIGAGMMSE 252 Query: 232 GRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP 291 GR+ +G +G GE+GH+ VE G C CG+ GCLET+A+ AAI LL + + P Sbjct: 253 GRMLLGHHGLAGELGHVMVELNGAVCRCGSRGCLETVASPAAIA----GLLARSWGQ--P 306 Query: 292 LDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVL 351 D + + + +GD A V+E G +G+ ++ A+ L NPQ +VI G++ EA + L Sbjct: 307 ADSIDLPELLR---RGDRGALRVVEDAGEAVGRALSAAVQLLNPQLVVIGGDLAEAGEAL 363 Query: 352 LPAIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALV 390 L I + + + L +V S L + + GA ALV Sbjct: 364 LEPIRRTLRRGTMGSLNQRLRIVPSTLGDSAGVRGAAALV 403 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 102/396 (25%), Positives = 181/396 (45%), Gaps = 23/396 (5%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ N A V L+ ++G SR ++++ S L +++T I LI+ G++ E GR Sbjct: 14 LRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIETGSLVGGRGR 73 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ--QTLEHALLNA 132 R+I I T +G+R+ R T+ + D+ ++ E + + + + E L +A Sbjct: 74 RSIGIRLNTEKLIVLGIRVTRSSYTLAIIDIFGELKNLEKHSITKDLEDPSVFERILEDA 133 Query: 133 IAQFIDSYQRKLRELIAISVILPG--LVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 + + Q+ + + + LPG L++ D+ ++ + +++ + E R + Sbjct: 134 STFLLKNDQKP----VGVGMALPGPYLINEDTS--LFLTNQGWKSFTFTKKFESRLHLPV 187 Query: 191 FVGHDIRSLALAEHYFGASQDCEDS-ILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 FV D A+ E +FG S+ + + + V G GAGI+ +G+I G G GEIGH+ Sbjct: 188 FVEQDSNVGAMGEWWFGNSEIGQGTKVFVSTGDGVGAGIVVDGKIQRGALGAAGEIGHMS 247 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + G +C CGN GCLE + AI + L K P+ +++ G+S Sbjct: 248 INFEGPQCQCGNKGCLELYCSEKAILKAAKCLSK-------PI--LNFESLVTEYRAGNS 298 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 +E++ G IA LFNP +V+ G + L + + F Sbjct: 299 AVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNRTVRRHIYPLFYQ 358 Query: 370 NLPVVRSELDHRSA-IGAFALVKRAMLN--GILLQH 402 N+ + S L+H S IG A+V +L LL H Sbjct: 359 NIGLQFSALEHDSCLIGIAAVVFDRLLKKPSFLLDH 394 >UniRef50_C7Q3N2 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q3N2_CATAD Length = 401 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 179/373 (47%), Gaps = 30/373 (8%) Query: 31 GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIG 90 GP+SR ++A ++ L+ ++VTK+ LIE G + EV ++S GR + + IG Sbjct: 40 GPLSRTELARRADLSQSTVTKVVNPLIEAGYVVEVGAKSSGMGRPHRLLRVAADRYAVIG 99 Query: 91 VRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELI-- 148 V++ T L DL ++VLA PL T H A+ +D+ +REL+ Sbjct: 100 VKIAPGSVTGVLADLEARVLAHRTRPL------TAGHD----PAEALDAAVAVVRELVDD 149 Query: 149 --------AISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLA 200 + V L G VD SG++ + + +N + E L + V +D+ +LA Sbjct: 150 PTAHGEVLGLGVGLGGHVDTASGRVAHSGVLGWDNVQVAEPLAAATGLPTVVDNDVNALA 209 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCG 260 +AE +FGA +D + +LV G G G++ G+++ G G GE+GHI ++ G C CG Sbjct: 210 IAERWFGAGRDIDSFVLVTTGPGVGCGLLLGGQLYAGSTGLAGELGHIPLQANGVVCDCG 269 Query: 261 NFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGR 320 N GCLET+A++ A+ L++ + D I AA GD A E +G Sbjct: 270 NRGCLETVASDRAV-------LREIAAHGGSITD--IGEAITAARSGDERALAAFETMGT 320 Query: 321 HLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDH 380 LG +A NLFNPQ+IV+ GE A + A E A + +V E D Sbjct: 321 ALGLGLATVCNLFNPQRIVLTGERASAYDLFGSACEKSWREHAFSTAAQDCELVVDEADD 380 Query: 381 -RSAIGAFALVKR 392 A GA LV R Sbjct: 381 LMWARGAGCLVIR 393 >UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (NagC/XylR) family n=1 Tax=Vibrio splendidus 12B01 RepID=A3UNW3_VIBSP Length = 405 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/375 (26%), Positives = 172/375 (45%), Gaps = 19/375 (5%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++D V+ N + + G SR +I++ L A+VT+ + LIE+GLI E + + Sbjct: 8 SLDDVQNHNKRVILNALHNSGSCSRKEISQLVGLDQATVTRAIKPLIEQGLIVETGVRKA 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 GR +I + T++ + VR+ R + +I +DL+ L P+ T + E + Sbjct: 68 ARGRSSIYLGFNTQHLRIVSVRIQRTNFSIDTYDLNGVSLTNVVKPI--NTDNSPEELIE 125 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW---GLVEALEERF- 186 Q D + + +++ I+V +PG KI M +NW + + E+F Sbjct: 126 YLTKQVSDVLKEQECDVLGIAVAMPGPFLEQDNKIMLM--TDAKNWQDIDFISHMREQFP 183 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVH--RGTGAGIISNGRIFIGRNGNVGE 244 + GHD + ALA + E S+L+ V +G G+G++ G+++ G G GE Sbjct: 184 DYPIYAGHDAKLAALAV-WRQLQSTYEASVLLYVSLGQGVGSGLVIEGQVYHGSLGTAGE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IGH + G +C CGN GCLE ++ A+ +R Y+ L + + A Sbjct: 243 IGHTSINFQGPQCKCGNLGCLELYSSTTALVER--------YKQEASLVSADFEMVVNAF 294 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 + +S A ++Y+ + L + IN NP +VI E+T+ L ++ L Sbjct: 295 HDRESAAINAVDYLAKCLAHGLVNNINQLNPDLVVIGDELTQLGADFLSRVKEYTYRLLL 354 Query: 365 KAFRTNLPVVRSELD 379 +N+ +V E D Sbjct: 355 PDLASNIELVLDESD 369 >UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus sp. SG-1 RepID=A6CIT4_9BACI Length = 372 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/344 (26%), Positives = 166/344 (48%), Gaps = 28/344 (8%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ +L+KQ+N + + P+SR ++ + L+ ++V+ I +LI++ LI E Q Sbjct: 4 GDYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEEGQGE 63 Query: 70 ST--GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 ST GGR+ I + + IGV +G + + DL +++ +E +P + ++ Sbjct: 64 STKEGGRKGIQLFFNPKCSFGIGVDIGGTKILLVVTDLDGEIIFKEEHPTEKNPEK---- 119 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 ++ I FID L + A+ + +P +++ G + P ++ ++ ++ L+E+F+ Sbjct: 120 -IVKLIYNFIDRSNTPLDLISAMGIGVPSIINTKEGIVVDAPALKWRDYRFLDFLKEKFE 178 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 CF+ +D+ E FGA +DC D + + + G G+ + +NG+I G + GEIG+ Sbjct: 179 FPCFLNNDVNCAMYGELRFGAGRDCSDLLFIAIGTGVGSAVYANGQIVEGATFSAGEIGY 238 Query: 248 I----QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 + VE G + G FG E + A L K G T K + Sbjct: 239 LVDKSDVEN-GYKRVPGEFGAFENKTSGTA-------LTKYG---------MTPKELFDQ 281 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 +GD A E+I+ +L IA A L N K++I G ++ + Sbjct: 282 YYQGDREAQEIIKDFTLNLAIAIANASCLLNSSKVIIGGGVSRS 325 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 103/383 (26%), Positives = 186/383 (48%), Gaps = 15/383 (3%) Query: 25 RLIDQY---GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVT 81 R+I Y G + ++++ L+ +VTK ++ + G I + + ++GGR Sbjct: 21 RIITHYIYNGSSTIPDLSKELDLSVPTVTKFIGEMCDDGYINDYGKLETSGGRHPNLYGL 80 Query: 82 ETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE--HALLNAIAQFIDS 139 + + +GV + R I L + + E +P + + ++E + L I FI Sbjct: 81 NPESGYFLGVDIKRFAVNIGLINFKGD-MVELKMNIPYKFENSIEGMNELCKHILNFIKK 139 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSL 199 +++ I+V + G V+P+SG + E L + L E+ + +D R++ Sbjct: 140 LTINKEKILNINVNVSGRVNPESG--YSFSQFNFEERPLADVLSEKLGYKVTIDNDTRAM 197 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 E+ G + +D I V V G G GII +G+I+ G++G GE GH+ CHC Sbjct: 198 TYGEYMQGCVKGEKDIIFVNVSWGVGIGIIIDGKIYTGKSGFSGEFGHMSAYDNEIICHC 257 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQS----RVPLDD--CTIKTICKAANKGDSLASE 313 G GCLET A+ +A+ + +L ++ G S R+ ++ T+ I A NK D L E Sbjct: 258 GKKGCLETEASGSALHRILLERIQSGESSILSTRIATEENPITLDEIIAAVNKEDLLCIE 317 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 ++E +G+ LGK IA IN+FNP+ ++I G ++ + I++ + +L + + Sbjct: 318 IVEEIGQKLGKQIAGLINIFNPELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKDSAI 377 Query: 374 VRSELDHRSAI-GAFALVKRAML 395 + S+L ++ I GA L + M Sbjct: 378 ITSKLKDKAGIVGACMLARSRMF 400 >UniRef50_D2R4U5 ROK family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4U5_9PLAN Length = 391 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 178/378 (47%), Gaps = 18/378 (4%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 ++++LN V + ++GP+SR I + ++ +VT+ L++ G+ +E Q + G Sbjct: 12 MLRELNVRQVVAAVQKHGPLSRADITRLTGISGPTVTRAVMSLLDAGVFEEGALQQAAVG 71 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE--HYPLPERTQQTLEHALLN 131 R + ++ +GV +G + L ++L + P + +Q L + Sbjct: 72 RPGKVVQLASKTVTVLGVVVGARTCEVVASGLDGEMLEGSIVQFATPAKYEQ-LVSEICR 130 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTC 190 A Q +D+ R +A+ V LPGL D +G P++ Q L L ++ ++ Sbjct: 131 AAQQLVDAGGRTA---LAVGVSLPGLYDSRTGSTVVSPNVPQTNGRQLGADLAKKLELKT 187 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V + SL AE FG ++ C D ++ + G G G++ GR+ G +G GE+GH+ V Sbjct: 188 AVLQECDSLCQAEQTFGEARGCSDFAMLDISEGLGLGVMHGGRLLDGHSGLAGELGHVTV 247 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 G +C CGN GCLET A + A+ L + + DD ++ I + Sbjct: 248 NLAGRKCGCGNVGCLETEATDTALA----TALGERLGRTLSFDD-AMQMIQSGELDPEQE 302 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 ++V+EY L +A IN+FNP K+ I G + + + + + + +AL R + Sbjct: 303 LTQVLEY----LAVGVAAVINIFNPSKLFIYGRVLDVQPTVFERLLALVARRALAPSRAD 358 Query: 371 LPVVRSELDHRSAIGAFA 388 ++R+ + R +GA A Sbjct: 359 CEIIRARGNKR--LGAIA 374 >UniRef50_C1IAS4 Xylose repressor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IAS4_9CLOT Length = 382 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 107/388 (27%), Positives = 182/388 (46%), Gaps = 27/388 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV--DQQASTG 72 +++ N + L+ + ISRI I++ L ASV++I L+E+ L+ E+ +S+G Sbjct: 7 IRKFNIVEILNLLFKKPNISRIDISKLINLNKASVSEIVSLLVEKNLVSEIGTGSSSSSG 66 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I + + ++G+ LG + L DL+ VL ++Y +E Sbjct: 67 GRKPILLKINEKAGCSLGIDLGIDYVSFLLTDLNRNVLFYDYYEEIINKNNVIE-----I 121 Query: 133 IAQFIDSYQRKLRE----LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 I + I S + +E LI ++ + G V + KI + P+ ++ LVE L Sbjct: 122 IVKVITSLENVFKEYEYGLIGATLAVHGRVFDN--KIKFTPYYDLDEIDLVEDLSLLMPN 179 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F + +LA + + ++++++ VH G GAGII N +++ G G+ GEIGHI Sbjct: 180 INFYIENESNLAAVGEFENSIDPLDNAVVINVHSGIGAGIIINSKLYTGFEGHAGEIGHI 239 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + P G+ C CGN GC E + A L + + S+ L TIK +C N D Sbjct: 240 VLVPNGKECPCGNKGCFEQYCSLPA--------LLEDFNSKSYLKIRTIKELCDLYNSND 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 +A + I + I+ NLF I I EIT +P + IN + F Sbjct: 292 KIAVDTITKNIELMSIGISNIFNLFAADNIFIHSEITHY----IPDYLTLINNKINTIFS 347 Query: 369 TNLPVVRSELDHRSAIGAFALVKRAMLN 396 + ++ ++LD++S + F V R + N Sbjct: 348 KAITILPNKLDNKSNL--FGGVNRCIYN 373 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/365 (25%), Positives = 176/365 (48%), Gaps = 11/365 (3%) Query: 38 IAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA--ISIVTETRNFHAIGVRLGR 95 + + L+ VT LI G++K+ + STGGRR +V ++ F +GV + Sbjct: 41 LCREMNLSIPKVTTSVTMLITEGVVKDFGKVGSTGGRRPNIYGLVPDSGFF--LGVDVKH 98 Query: 96 HDATITLFDLSSKVLAEEHY-PLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVIL 154 I L DL ++ Y P + + L I +FI + +++ + + L Sbjct: 99 QHINIGLIDLQKVIIKITKYIPYQLINNKDALYELCRLIKEFIYNTSIPKYKILGLGINL 158 Query: 155 PGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCED 214 G ++ ++G + + + + LE+ + V +D R++A E G ++ ED Sbjct: 159 SGRINHETGYSYNFFNFYEDPLSTI--LEKELGIKTMVENDSRAMAYGEFSAGVVKEEED 216 Query: 215 SILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAI 274 + + + G G GI+ N +++ G++G GE+GH+ + C CG GCLET A+ + Sbjct: 217 VLFLNLDYGIGMGIMLNKKLYYGKSGFAGELGHVPLLNNEIICQCGKKGCLETEASGQGL 276 Query: 275 EQRVLNLLKQGYQSRV---PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAIN 331 + ++ G + + L ++ I +AAN D L+ E++ +G LG+ IA+ IN Sbjct: 277 IRMFKTRVEAGSTTTIDKNKLGQLQVQDIIRAANNDDVLSIELLAKMGEILGRGIAMLIN 336 Query: 332 LFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA-IGAFALV 390 +FNP+ IV+ G + E + + I+S +N +L + + S+L + IG+ L+ Sbjct: 337 IFNPELIVLGGLLAETGEYIQLPIKSAVNKYSLSLMNNDTKLKLSKLGEEAGVIGSCLLI 396 Query: 391 KRAML 395 + +L Sbjct: 397 RNKLL 401 >UniRef50_A6DFD9 Probable transcription repressor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFD9_9BACT Length = 320 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/255 (31%), Positives = 137/255 (53%), Gaps = 21/255 (8%) Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAE 203 + +L AI PGLV+P +G ++ P++ +N+ L E L + F + + +D+ + E Sbjct: 61 VSDLSAIGGCAPGLVEPKTGLVYDTPNLGFKNFPLQEKLSQDFNIPVHIENDVNAGLYGE 120 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFG 263 +FGA++ E+ + + G G I+ +G++ G G GE GHI V+P G C CG G Sbjct: 121 LHFGAARGMENVLALSPGTGVGGAIVIDGKLIRGSRGGAGEFGHIIVQPDGPLCGCGQRG 180 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRVPL--DDC-----TIKT--ICKAANKGDSLASEV 314 CLE I++ A+ Q++L+ +G RVPL D+ +K+ I +A N GD + Sbjct: 181 CLEAISSRTALSQQILSFAVRG---RVPLVIDEAKGNLKKVKSGLIARAYNSGDEDVQAI 237 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL--KAFRTN-- 370 ++Y R+LG ++ +N FNP+ I++ G + EA LP I+T+ + KA N Sbjct: 238 VDYAARYLGVGMSNLVNSFNPEAIILGGGLIEA----LPEPFLKISTKVMREKAMGVNGE 293 Query: 371 -LPVVRSELDHRSAI 384 + V+ +EL + I Sbjct: 294 KVKVLAAELGDDAVI 308 >UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=A5IKW0_THEP1 Length = 379 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 187/382 (48%), Gaps = 27/382 (7%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ--QASTG 72 +K LN ++ ++I + PISR I+E + L P+SVT++T++LI+ G I+E+ + S G Sbjct: 8 IKILNKKSILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIGTMGKNSPG 67 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 RR I + F ++ +G + T + +V + P + N Sbjct: 68 RRRRILLDLRKNAFLSLVFDIGVNITTYGVGFFDGEVEPRGTFNTPREPVE-----FFNI 122 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 + + + + R + IS+ +PG+VD + KI P+++ EN + E L + V Sbjct: 123 VKEIYERISGEYR-ISRISLSVPGMVDMEEKKILLAPNLEWENVSIKELL--KVDVPVLA 179 Query: 193 GHDIRSLALAEHYFGAS-QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 ++ LAE Y ++ ++++ + + G GAG++ +G+IF G + GE GH+ V Sbjct: 180 DNEANLSMLAEKYHSEDLRNVKEAVFIIIREGVGAGLMIDGKIFRGPSFTAGEAGHMTVN 239 Query: 252 PLGER-CHCGNFGCLETIAA-NAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 +R CHC N+GC E +++ N AIEQ Y +P + K A K + Sbjct: 240 MYSDRQCHCSNWGCWELVSSINWAIEQ---------YGKELPGKNAIEKF---QALKQRN 287 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A ++ ++ I +N+ NP+ +++ GE+ + L ++ ++ +ALKA Sbjct: 288 DAKRILMKFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFLDIVKDFVHQRALKAAVK 347 Query: 370 NLPVVRSELDHRSA--IGAFAL 389 +L + +E + S+ +GA L Sbjct: 348 DLKIRTTEFRNISSNLVGAAVL 369 >UniRef50_A4FHJ7 Xylose operon repressor n=4 Tax=Actinobacteria (class) RepID=A4FHJ7_SACEN Length = 406 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 179/388 (46%), Gaps = 24/388 (6%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 L+ AA+ L G +SR +IA + +L+PASVT++T+ LIERGL+ E+ S GGR A Sbjct: 7 DLHRAAILALAGTAGSLSRTEIARRLELSPASVTQLTKDLIERGLLAELAAAPSRGGRPA 66 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSS---KVLAEEHYPLPERTQQTLEHALLNAI 133 + HAIGV++ I L +V + P L A+L+ Sbjct: 67 QLLGLAGTARHAIGVKVTPDHLAIADVQLDGTVRRVETADFDPGSADALGALADAILSFA 126 Query: 134 AQ----FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 L +S G+V+ D + +P L L + Sbjct: 127 GDCEGGTASLLGVGLGVPGGVSDRWEGVVNADILGWNGLP--------LGRRLRSMLGLP 178 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D+ +LA+AE +G + + +++ + G GA I+S G ++ G +G+ GE+GH Sbjct: 179 VLVDNDVNALAVAECLYGRGRTRRNLVIITIGVGIGAAIVSGGSVYRGAHGDAGELGHTP 238 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 E G RC CGN GCLE + + A L+ Q + + D I + AA GD+ Sbjct: 239 FELDGPRCVCGNNGCLEAVIGDRA-------LVAQARRDGILSADQGIAALHDAAAAGDA 291 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 AS ++ GR LG+++A +N+ +P+ +V+ GE + P E + L R Sbjct: 292 GASAILREAGRKLGRSVASLLNVIDPESVVVYGEGIAGWRYWEPGFEPALRAH-LPRSRN 350 Query: 370 NLPVVRSELDHRSAI-GAFALVKRAMLN 396 ++PV D R+ GA ALV L+ Sbjct: 351 DVPVEVDRWDDRNWTQGAAALVMSVPLD 378 >UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c RepID=D1VEG0_9ACTO Length = 423 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 103/393 (26%), Positives = 171/393 (43%), Gaps = 38/393 (9%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIER-GLIKEVDQQASTG- 72 +++ N + + R + GP R + Q+ L +++ + L GL++E +G Sbjct: 18 LRRHNLSLLLRYVHLAGPTQRATLTAQTGLNRSTIGALAADLASTAGLVREESPDTHSGA 77 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR ++ +V ET + + LG L +L+ E PLP + A Sbjct: 78 GRPSLVVVPETERYQVLAFDLGVDRIIAARVGLGGALLSREVVPLPPGERG------FTA 131 Query: 133 IAQFIDSYQRKLRELIA-------ISVILPGLVDPDSGKIHYMPHIQVENW--------G 177 + + R+L E + I V +P +V G + + P++ E Sbjct: 132 VVDLTAATARRLAEALGPLTHCAGIGVAVPAVVRSADGFVRFAPNLGWEQQPLGAALRAA 191 Query: 178 LVEALEERF------KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISN 231 LV+AL +R V +D ALAEH G ++ +D + + G GAGII N Sbjct: 192 LVDALPDRAIGGPVGSPAVQVANDADLGALAEHARGVARGHDDIVYLSGQVGLGAGIICN 251 Query: 232 GRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP 291 GR G G GE GH+ V P G+RC CG GC ET AI L G++ P Sbjct: 252 GRPLRGHGGYAGEAGHMIVNPTGQRCRCGARGCWETEIGTDAI------LRAAGHE---P 302 Query: 292 LDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVL 351 D +++ + A+ GD+ A + V R L + +NLFNP+ ++ GE+ + +V+ Sbjct: 303 GDGGSVRAVVAEASAGDARARLALYEVSRWLAVGVGNLVNLFNPELVIFGGELRDLLEVV 362 Query: 352 LPAIESCINTQALKAFRTNLPVVRSELDHRSAI 384 + + L R ++ +V S L S++ Sbjct: 363 EHDVVGRMGAGGLTVSREHVALVPSALGGDSSL 395 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 102/381 (26%), Positives = 171/381 (44%), Gaps = 27/381 (7%) Query: 22 AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ----ASTGGRRAI 77 AV RL+ + G +SR IA L+ ++V+ I L+ L+ E+D + GR Sbjct: 16 AVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVELDAKLAPAGGGAGRPGA 75 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHALLNAIAQ 135 +++ + AIGV G + + +++ V + LP Q + A + I Sbjct: 76 AVMLNPASGEAIGVDFGYRHVHVIIANVAHAVRIAKSVRLPVGYDPAQGFDVAS-DLIRT 134 Query: 136 FIDSYQRKLRELIAISVILPGLVD-----PDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 ID ++ + V +PG D P SG I V L R + Sbjct: 135 AIDEAGTDPSRILGVGVSVPGPFDTKRGVPSSGMPSRWAGIPVAT-----ELAARLNLPV 189 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 D R ALAE +GA++ C++ + +++H G G +SNG++ G NG GEIGH+ V Sbjct: 190 LADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGINGGAGEIGHLVV 249 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 + G C CGN GCLET V+ L+ Y R+ T++ + A +GD Sbjct: 250 DATGPLCRCGNRGCLETFVGLPV----VMRALEPAYGDRL-----TLRNVITMAWQGDRG 300 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 + G G+ + + N+ NPQ ++I G ++ A ++L+ + T +L Sbjct: 301 CIRALSDAGTMAGRAVGMLGNILNPQSVIIGGALSAAGELLMGPLREAAATASLPLAGDA 360 Query: 371 LPVVRSELDHRS-AIGAFALV 390 + + L ++ A+GA A+V Sbjct: 361 MTLQVGSLGPQACALGAVAMV 381 >UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFQ9_9ACTN Length = 405 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 159/351 (45%), Gaps = 40/351 (11%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 V V+Q N + R + G SR IA +S L+ ASVT + +LI GL+ E AS Sbjct: 14 TVSDVRQRNRSQALRSVILTGETSRAAIARESGLSVASVTNLISELISEGLVMEAGSVAS 73 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 +GGR + + +G +G + LFDLS + E + E + Sbjct: 74 SGGRPVTLLAPNPSGAYFLGADVGERGVAVELFDLSMTRIDREF-------RGGREGEPI 126 Query: 131 NAIAQFIDSYQRKLRE--------LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 AIA +D LRE +I I + LPG+V+ D+ + + Q W Sbjct: 127 EAIAADLDEALNALRERNPAAWDRMIGIGLGLPGIVESDAEGRQVL-YAQSLGW------ 179 Query: 183 EERFKVTCFVGHDI--------RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI 234 V V HDI ++ A+AE + GA++ ++++V + RG G I+SNG + Sbjct: 180 -SPIPVADLVSHDIPVFAENGAKTQAMAELWDGAARGVNEALVVLLGRGVGLAIVSNGEL 238 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET-IAANAAIEQRVLNLLKQGYQSRVPLD 293 G N + GE GH+++ G C CG GC+E + A+A +L L ++ D Sbjct: 239 ARGLNSSAGEWGHVKIVRNGRLCRCGGRGCVEAYLGADA-----ILELWREAGGV---FD 290 Query: 294 DCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEI 344 + + D +A V++ + LG + +NL NP++++I G + Sbjct: 291 GSGWGAVGQLLESHDPVAVGVVDELIETLGSALGGLVNLTNPERVIIGGWV 341 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 23/334 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ N A + R + GP SR +++ + L+ ASV+ +T LI G+I E S GGR Sbjct: 12 LRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGIIVEAGLVESDGGR 71 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTL--EHALLN 131 + + + +AIGV +G + LFDL A+ YPL P R L H +L+ Sbjct: 72 PRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADYPLRPGRHDVDLVVRH-ILS 130 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA---LEERFKV 188 I + + ++ + + +PG+V+ SG + H Q W V L + Sbjct: 131 GIDAVLAAGGVDPARVLGVGIGVPGIVE--SGP-EALIHAQTFGWDAVPLGTLLRAGTSL 187 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 +V + +++ AE +FGA + +I+ + G GA II++G + G N + GE GH Sbjct: 188 PLYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRGANSSAGEWGHT 247 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++ G C CG GCLE +I L + G + + + + + ++ Sbjct: 248 KIMMGGRACRCGGRGCLEAYIGAESI------LDRAGLSAEIADEQAVLAELVRSGGP-- 299 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG 342 VI+ +LG +A INLFNP++IVI G Sbjct: 300 -----VIDETADYLGAGLANLINLFNPERIVIGG 328 >UniRef50_B5GKQ2 ROK family transcriptional regulator (Fragment) n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKQ2_9ACTO Length = 446 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/319 (30%), Positives = 154/319 (48%), Gaps = 28/319 (8%) Query: 34 SRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRL 93 SR ++A AP++++ QL+ERGL+ E Q+STGGR + + +A+ + Sbjct: 38 SRAELAALLGAAPSTISLTVAQLVERGLVAEEGTQSSTGGRPRKVLRVGGNDEYAVAADV 97 Query: 94 GRHDATI--TLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAIS 151 G A I L + +A + + + + L + A +LR + Sbjct: 98 GGRHARIGVVLPGGGLREVANVPFEIDDGPETALPRLAEHLEALAAARGHARLR---GVG 154 Query: 152 VILPGLVDPDSGKI---HYMP---HIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 + LPG VD +G + MP V +W LEERF VT V +D +A+ E Sbjct: 155 LSLPGPVDAAAGAVVLPSRMPGWNRFPVADW-----LEERFGVTAVVDNDANCMAVGEQS 209 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE--RCHCGNFG 263 + SI+V++ GAG+I++GR++ G G G+I HI+V+ G C CGN G Sbjct: 210 VRPAGH-RQSIMVKIGSAIGAGVIADGRLYRGATGAAGDITHIRVDAGGADVPCSCGNTG 268 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLG 323 CLET+A+ AA+ V L ++G LD + + + + A D A+ + G HLG Sbjct: 269 CLETVASGAAL---VRILRERG------LDVTSTEDVVRLAGDADPEATRAVRRAGDHLG 319 Query: 324 KTIAIAINLFNPQKIVIAG 342 + +A +N FNP + + G Sbjct: 320 QVLAANVNFFNPDAVYLGG 338 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/374 (23%), Positives = 180/374 (48%), Gaps = 20/374 (5%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 N +R + + S+++I++ ++ +VTKI + + LI E GR+AI Sbjct: 13 NENRTFRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGTNNGKLGRKAIK 72 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFID 138 + +IG+++ + ++ L +L K+L + + ++N + +F+ Sbjct: 73 YQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEFINSENFVFLVINELKKFLW 132 Query: 139 SYQRKLRELI-AISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIR 197 + +K E I I ++LPG+V+P++ I + + N + E +EE F + F+ ++ Sbjct: 133 EFDKK--EFIKGIGIVLPGIVNPENNMIKLGGNFSLLNQDMKE-IEEEFGLPIFLENEAN 189 Query: 198 SLALAEHYFGAS--QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 + A+ E+ S Q ++ + V + G G+GII +++ G+ GEIGHI + P G+ Sbjct: 190 AGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSGEIGHIPIIPNGD 249 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK---TICKAANKGDSLAS 312 +C CG+ GCLE +N A+ + ++ +Q C IK I + G+ Sbjct: 250 KCACGSEGCLEQYCSNLALMKE----FEKEFQ-------CEIKEYEDIFQEKFIGNEKGK 298 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 +++E L I A+ + N KI+I G+I++ + P ++ I + + + ++ Sbjct: 299 KILERYTWILALGIKTALMMLNSDKIIIGGKISDYKEYFEPMLKEIIFSNNIFSNDADIL 358 Query: 373 VVRSELDHRSAIGA 386 S D+ + +GA Sbjct: 359 EFSSLSDNANLLGA 372 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 105/383 (27%), Positives = 178/383 (46%), Gaps = 13/383 (3%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 A V L+ +R +I +S L VT+ QL+ GL++E S+GGR + Sbjct: 26 ATVLDLVRSGAARTRPEIGRRSGLGRTVVTQRVNQLMACGLLEEGALGPSSGGRAPRELK 85 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-----PERTQQTLEHALLNAIAQ 135 + LG + + DL+ VLAE PE + +E L + Q Sbjct: 86 FRAHAGVILAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLERVEEVLDELLDQ 145 Query: 136 FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGH 194 + + + LPG V+ +G+ P + + + + + L R+ +V + Sbjct: 146 VRAEQNDPDLTVWGVGIGLPGPVEFATGRPSAPPIMPGWDGYPVRDRLARRYNTPVWVDN 205 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 ++ ++AL E G+++ D + V++ G GAG++S G + G G G+IGH V Sbjct: 206 EVNTMALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTLHRGSQGCAGDIGHAAVSDET 265 Query: 255 ER-CHCGNFGCLETIAANAAIEQRVLNLLKQGYQ---SRVPLDDCTIKT--ICKAANKGD 308 E C CGN GCLE A AA+ + L+ ++G + V D TI I +AA GD Sbjct: 266 EVVCRCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLADTGTITAADISRAAQSGD 325 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 + E++ GR +G +A ++ FNP ++I G + A +LL A+ + ++L Sbjct: 326 RTSVELLTRAGRFIGGLLATLVSFFNPALVIIGGGVAGAGDLLLAAVRETVYRRSLPLAT 385 Query: 369 TNLPVVRSELDHRSA-IGAFALV 390 L ++RS L+ R+ +GA +V Sbjct: 386 RELRIIRSTLNDRAGLVGAAFMV 408 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 147/285 (51%), Gaps = 11/285 (3%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT---LEHALLNAIAQFIDSYQRKLR 145 +GV +G TI + L++ + + +P Q + + +A+ + + + + Sbjct: 7 VGVDVGG--TTIKMAFLTTAGEIVDKWEIPTNKQDGGALITTNIADALDKRLSGHHKSKS 64 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 +LI I + PG ++ D+G I++ +I ++ L + LEE K+ V +D AL E + Sbjct: 65 DLIGIGLGAPGFIEMDTGFIYHAVNIGWRDFPLKDKLEEETKLPVIVDNDANIAALGEMW 124 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL-GERCHCGNFGC 264 GA ++ +L+ + G G GI++NG I G NG GEIGHI V P G C+CG GC Sbjct: 125 KGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITVIPEGGAPCNCGKTGC 184 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDD-----CTIKTICKAANKGDSLASEVIEYVG 319 LET+A+ I + + + +S++ LD T K + AA+ D+ A V++++ Sbjct: 185 LETVASATGIARIATEGVTEHKESQLALDYDKHGVLTAKDVFSAADASDAFALSVVDHIA 244 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +LG IA N NP+KIVI G +++A LL I+ AL Sbjct: 245 YYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPIKQHFEAYAL 289 >UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C348_BEUC1 Length = 410 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 102/391 (26%), Positives = 183/391 (46%), Gaps = 23/391 (5%) Query: 15 VKQLNSAA-VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD--QQAST 71 +KQ +AA V+ I +GP+SR ++ + L ++V ++T L GL+ E S Sbjct: 4 LKQGTTAARVFGEIWHHGPLSRSELVALTGLTKSTVFQLTEDLQRDGLVVETGLRTSGSQ 63 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHALL 130 GGRRA + +GV LG ++ + D +VL P + R +++ Sbjct: 64 GGRRATLLQANPDAVRVVGVHLGGTRTSVAITDTFGRVLDARSRPTVRRRPDESVAR--- 120 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 +A+ I + A+ V +PGL+D D+G P++ + + + E + Sbjct: 121 --VAEMIGELSAEHGAPSAVGVAVPGLIDRDTGLCLVAPNLGWRDVPVATLIGEAVQAPT 178 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAG--IISNGRIFIGRNGNVGEIGHI 248 + ++++A+AE + E L ++ GTG G +I++G + G G GE+GH+ Sbjct: 179 IALNTVQAMAVAE--MAQLRPDERMTLAMLYVGTGVGTALITDGNLLRGARGLAGELGHL 236 Query: 249 QV----EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 QV +P +C CG GCLE++ AI +R R+ T + + + A Sbjct: 237 QVRDPGDPEAVKCACGRVGCLESLVGADAIVRRATQRGIAAAGRRL-----TPELVGELA 291 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 + GD+ A +I+ + +G+ A + L NP +V+AG + +LL + + + Sbjct: 292 SDGDAAARSLIQDIAVEMGEAAAALVQLTNPDTVVVAGSVASMGDMLLDPLRETVVRRTQ 351 Query: 365 KAFRTNLPVVRSELDHRSAI-GAFALVKRAM 394 R +L V RS LD++ + GA L +A+ Sbjct: 352 PELRESLDVRRSLLDNQGKLRGAITLALQAL 382 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 100/358 (27%), Positives = 164/358 (45%), Gaps = 12/358 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 + +N V RLI + G +SR +A + L +V+ + +LIERGL+ E G R Sbjct: 14 RDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELIERGLVIETGLATGGGIGR 73 Query: 76 A---ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 +S+ +R AI V + L L V + Q LN Sbjct: 74 TPMLLSVAEWSRPVAAISVNADSVEGA--LVSLRGNV----GRRISRSIQGQTGADALNT 127 Query: 133 IAQFIDSY-QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + + +D Q + L+ I V PGL++ SG I ++ + L + L ER+ + Sbjct: 128 LQETLDELIQTANQPLLGIGVTTPGLINASSGMIVRAVGLEWADLPLGQLLHERYGLPVK 187 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V +D + LALAEH FG + + +++++ +G GAGI+ NG+++ G GEIGH+ Sbjct: 188 VVNDSQCLALAEHLFGEWRGVANLVVLKIGKGVGAGIVLNGQLYAGEGFGAGEIGHLAFT 247 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP--LDDCTIKTICKAANKGDS 309 G C CGN GCLET+ + A+ + + S + D ++ I + A GD Sbjct: 248 ANGLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLGRIAEGAAMGDP 307 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 +A VI G +A I+L + + ++I G IT + + + +AL A Sbjct: 308 VAQHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRREVAQRALPAL 365 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/384 (23%), Positives = 173/384 (45%), Gaps = 21/384 (5%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 D +++ N + V + + + GP++RI + + ++L+PA+VT IT L+++ LI ++ + Sbjct: 8 DQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSLESEEPKA 67 Query: 73 ----GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE--HYPLPERTQQTLE 126 GR + + IGVRL ++ + L + + +V+ E H+ + Sbjct: 68 PQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSATEDAASFP 127 Query: 127 HALLNAIAQFIDS---YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 L+ I QF++ ++RE I V G+V+ ++G + + P +V L Sbjct: 128 ETLIGTIRQFLNDAGIVPSRVRE---IGVAAQGVVETETGVVAWSPAFAGRKIPIVGPLH 184 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 + F C++ +D + A H+ ++ ++ + G G G+ + R+F G +G Sbjct: 185 DAFGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSGASGTAA 244 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E GH P G C CG GCLE ++ A+ + +L + S + + + + Sbjct: 245 EFGHANHLPGGALCRCGKKGCLEAYLSDYALVRAASHLPENTDPSTIKAGVGGLARLIEL 304 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA----DKVLLPAIESCI 359 A GD A GR LG +A I + +P++IV+ G A +K + +E + Sbjct: 305 AGSGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVLTGAAMRAFSFMEKGMWEGLEEAL 364 Query: 360 -----NTQALKAFRTNLPVVRSEL 378 N +L N +RS L Sbjct: 365 VADLRNNFSLDVMPWNEDFIRSGL 388 >UniRef50_B0MYS3 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MYS3_9BACT Length = 331 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/330 (28%), Positives = 155/330 (46%), Gaps = 35/330 (10%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELI 148 IGV +G + + L D + +V A + +T E+ + + +++ R LREL Sbjct: 6 IGVDIGGINTVLGLVDRTGEVYARSSF-------RTAEYPFFDDYSAYVEMLVRTLRELC 58 Query: 149 AI---SVILPGL------VDPDSGKIHYMPHIQVENWGLVEALE-ERFKVTC------FV 192 A +L G+ + +G+I ++ G E RF C F Sbjct: 59 AAMPAGAVLSGIGIGAPNANYHTGRIERPVNLWKFRSGEPNPEEGRRFFSLCKEVGNSFP 118 Query: 193 G------HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 G +D + AL E +G + D I+V + G G+G ++ GR+ G +G GE+G Sbjct: 119 GIPVRITNDANAAALGEIAYGNAGGMRDFIMVTLGTGLGSGFVAGGRMIYGHDGMAGELG 178 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQ----GYQSRVPLDDCTIKTICK 302 H+ VEP G +C CG GCLET + I++ V L+ + VP D + I + Sbjct: 179 HVVVEPGGRQCGCGRRGCLETYVSATGIKRTVFELMARETVPSVLRDVPYDKFDARIITE 238 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA KGDSLA EV LG+ +A A+ + +P+ + G + +A ++LL + Sbjct: 239 AAQKGDSLALEVFRCTAERLGRALANAVAITSPEAVFFFGGLAQAGELLLEPTRRYLEEN 298 Query: 363 ALKAFRTNLPVVRSELDHRSA--IGAFALV 390 L +R N+ V+ S + ++A +GA AL+ Sbjct: 299 LLPVYRGNVKVLPSGIPAQNAAILGASALI 328 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 118/389 (30%), Positives = 177/389 (45%), Gaps = 36/389 (9%) Query: 34 SRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST-GGRRAISIVTETRNFHAIGVR 92 +R+ IA ++ ++++ I +LI GL++E + + S GRRA + R + + Sbjct: 32 ARVDIARDLGMSRSAISSIVSELIGVGLVQEGNTRGSGRAGRRATLLSLNARAAALLAID 91 Query: 93 LGRHDATITLFDLSSKVLAEEHYPL-----PERTQQTLEHALLNAIAQFIDSYQRKLR-- 145 LG + L DL + LA P P T H LL + D+ QR+ Sbjct: 92 LGASHVRMDLMDLRCRTLASRTVPHEVISGPAETY----HLLL----RLADAVQREAHVP 143 Query: 146 --ELIAISVILPGLVDPDSGKIHYMPHIQVENWG---LVEALEERFKVTCFVGHDIRSLA 200 + + + +PG VD D+G++ P++ W + EAL+ + V +D A Sbjct: 144 ADHVALVGLGVPGPVDQDTGRVIRPPNM--PGWDGEPVREALQRHLGLEVLVDNDANLGA 201 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCG 260 AE FG + D I V+ G GAG++ GR+ G G GEIGHI + G G Sbjct: 202 QAEARFGPHRGVSDLIYVKAATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSG 261 Query: 261 NFGCLETIAAN----AAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIE 316 N G LE+ AA A E R + + D T+ + + A D LA E+ E Sbjct: 262 NPGSLESYAAAQVLVATAEAR-----RAAGAPTLLTDPVTLPALVRHAET-DPLARELWE 315 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI--NTQALKAFRTNLPVV 374 VG HLG I+ A+NLFNP +VI G + EA V L A+ S T + A RT + + Sbjct: 316 DVGHHLGVAISTALNLFNPAVVVIGGRLAEAGPVFLNAVRSSALSRTMQINAERTRIDLS 375 Query: 375 RSELDHRSAIGAFALVKRAMLNGILLQHL 403 D +GA A++ +L L HL Sbjct: 376 TLGGD-AGVLGAGAMMLDQLLTSSGLPHL 403 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 172/349 (49%), Gaps = 9/349 (2%) Query: 56 LIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY 115 L++ G++ EV Q S+GGRRA ++ +GV + + L VLA + Sbjct: 19 LLDEGVLDEVGLQESSGGRRAETLRLSESLGAVLGVDMDATSMQLALMRPDMAVLARQCE 78 Query: 116 PLP-ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QV 173 + R + L + + + +LIAI + +PG VD SG++ P + Sbjct: 79 TIDVRRGPGVILAQLCGLMRELMARCGLSSSQLIAIGMGVPGPVDFASGQLVNPPLMPDW 138 Query: 174 ENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGR 233 + + + + L E F FV +D+ +AL + + + D ++++V G G GI+ +G+ Sbjct: 139 DGFSIRDYLREAFVAPVFVDNDVNLMALGKLWR-LQRTLSDFLVIKVGTGIGCGIVCHGQ 197 Query: 234 IFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV--- 290 ++ G NG+ G++GHI V+ G RCHCGN GC+E +AA A+ + + + ++G S + Sbjct: 198 VYRGTNGSAGDVGHICVDQAGPRCHCGNQGCVEAMAAAPALVRAAIEVAQKGESSWLAER 257 Query: 291 --PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEAD 348 I+ + +A+ GD A+ +I+ G +G+ +A +N FNP + I G + + Sbjct: 258 LQASGSLGIEDLAQASRVGDVAANILIQRAGSLVGQMLASVVNFFNPSHVFIGGLVADMG 317 Query: 349 KVLLPAIESCINTQALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAMLN 396 + L ++ + ++L +L + + L D + +GA L + L Sbjct: 318 PLFLASVRQSVYHRSLALSTRHLEIQCAPLADDAALVGAGVLAMQESLT 366 >UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=1 Tax=Streptomyces avermitilis RepID=Q82LB9_STRAW Length = 424 Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 167/361 (46%), Gaps = 17/361 (4%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 ++ N V R I P SR ++A + L+ A+V + +L++ G++ EV + S GGR Sbjct: 18 IRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLGMLTEVGFEDSAGGR 77 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA---EEHYPLPERTQQTLEHALLN 131 + + IGV + + LFDL LA E+ P R +Q + H Sbjct: 78 PRGLVAVNSGGGALIGVDIAETYVRVELFDLGLGQLARADEDMRPGESRPEQVVGHVAAA 137 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + + R ++ + V +PG VD D G Y P+ + L+ L E + Sbjct: 138 VGSVVAQAGVDGAR-VLGVGVSVPGQVDRDRGIAEYAPNWDWHDVPLLSLLAEHITHPLY 196 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 + + +R+ A+AE +FGA++ D+++V + G GAG+ G + G + + GE GH + Sbjct: 197 LDNPLRACAVAELWFGAARGRGDAVVVNLGTGVGAGLALGGALHRGVSNSAGEWGHTTLV 256 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLN------LLKQGYQSRVPLDDCTIKTICKAAN 305 G CHCGN GC+ET I Q + LL G Q+ TI + + Sbjct: 257 LDGRLCHCGNHGCVETYVGAPGIMQNLRELSPADPLLHPGDQT------ATIDALARGVA 310 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQAL 364 D +A +V+ R+LG IA +NL NP+ +V++ + + LL + + AL Sbjct: 311 ARDPVALKVVRDTARYLGAGIADLVNLLNPEVVVLSSWVAATLGEPLLDEVREAVARHAL 370 Query: 365 K 365 + Sbjct: 371 R 371 >UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID=C5C1Z1_BEUC1 Length = 403 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 168/356 (47%), Gaps = 26/356 (7%) Query: 38 IAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHD 97 +AE Q T++ L+ GL+ V +ASTGGR + + + +GV LG Sbjct: 42 VAETGQSRSTIATRVD-ALLATGLVASVGSRASTGGRPPTAFAFDPTSRVVLGVDLGAAH 100 Query: 98 ATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA----QFIDSYQRKLRELIAISVI 153 + + DL+ +LAE P+ R E +L +A + +D R +L + + Sbjct: 101 GRLAVTDLAGSILAEHAEPV--RISDAPEK-VLGWVARTGHELLDRAGRPSTDLAGLGLG 157 Query: 154 LPGLVDPDSGKIHYMPHIQVENWGLVEA---LEERFKVTCFVGHDIRSLALAEHYFGASQ 210 LPG V+ +G+ P + W V+ L F V +D+ +AL EH G Sbjct: 158 LPGPVEHSTGRPVDPPIM--PGWHGVDVPGILGAHFAAPILVDNDVNLMALGEHAMG-FP 214 Query: 211 DCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER--CHCGNFGCLETI 268 D +D + V+V G GAGII++G + G G G++GH+ V P GE C CGN GC+E + Sbjct: 215 DVDDLLFVKVATGIGAGIIADGELRRGAQGAAGDLGHMAV-PGGEPRLCTCGNTGCVEAL 273 Query: 269 AANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAI 328 A+ AI + L + G +D T + GD A+ + GR LG +A Sbjct: 274 ASGNAIATK---LREAG------IDATTSDDVVALVRAGDPTATATLRQAGRELGAVLAG 324 Query: 329 AINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI 384 ++L NP +VI G ++ A + LL I + ++L +L +V + ++A+ Sbjct: 325 TVSLLNPSVVVIGGSLSAAGEQLLAGIREVVYARSLPLATQHLQIVGTRTARQAAV 380 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 153/319 (47%), Gaps = 8/319 (2%) Query: 49 VTKITRQLIERGLIKEVDQQASTGGRRAIS-IVTETRNFHAIGVRLGRHDATITLFDLSS 107 VT I L++ G + E STGGRRA++ ++ + + + V + + T+ ++D+ + Sbjct: 18 VTGIVNDLVQDGYVVEHGLAPSTGGRRALTFLLNKEKQKFIVAVSVDQLITTVVIYDMLN 77 Query: 108 KVLAE-EHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIH 166 + E L +QT ++ I +I +++ I + +PG+++ G H Sbjct: 78 NIQVEPAKIYLNLADEQTSMALFISFITGYIAKSGISEEQILGIGIGMPGVINAKLGVNH 137 Query: 167 YMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGA 226 I+ E L L + K ++ +D +ALAE FG ++ +D ++V + G G Sbjct: 138 TFFKIKNEG-NLKNYLSDALKFPVYIDNDSSLIALAELKFGEGRNMKDVMVVNIGWGIGL 196 Query: 227 GIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGY 286 G+I NG IF G +G GE HI + + C CG GCLE + + +R + G Sbjct: 197 GMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVDTSLLVLVERAKAEIAAGI 256 Query: 287 QSRVP---LDDCTI--KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIA 341 SR+ LDD + + AA GD LA ++ +GK ++ I++ NP+ IV+ Sbjct: 257 SSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIGKGLSTLIHILNPELIVLG 316 Query: 342 GEITEADKVLLPAIESCIN 360 G A K+ + I+ IN Sbjct: 317 GRGATAGKIFMAPIQHAIN 335 >UniRef50_C7MQ22 Transcriptional regulator/sugar kinase n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQ22_SACVD Length = 384 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 106/382 (27%), Positives = 177/382 (46%), Gaps = 27/382 (7%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 V ++ GP++R ++ E+ ++ A++ + L GL++ V + S+GGRRA + Sbjct: 12 VLGVLRAAGPLTRQELQERVGVSRATMVERLDVLRRAGLLRRVGHRESSGGRRAELLAVN 71 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHALLNAIAQFIDSY 140 A+ LG+ AT+ + DL V A + L + Q+TL + + DS Sbjct: 72 DTGHTALVADLGQSHATLAVVDLRGTVFARAGHELSPHDSPQETLSRLVETGKSLITDSG 131 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG--LVEALEERFKVTCFVGHDIRS 198 K L A+ + +PG +D D G + P E G L + +E F V + +D + Sbjct: 132 --KAETLCAVGLSVPGQIDHDEG-VTAAPWSMREWDGVRLRDPFKEAFDVPVLLENDANA 188 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCH 258 LA+AE Y+ + + V+V G GAG++ GR G G GEIGH+++E RC Sbjct: 189 LAMAE-YYAMGRPEATMVGVKVGTGIGAGVVIAGRPHRGETGAAGEIGHMRIEGGDRRCV 247 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYV 318 CG GC +AA A+ V L +G +S + + + +G + A + + Sbjct: 248 CGRRGC---VAAEASGRALVRMLRSKGVRS--------VNDVVRWVEEGRAEAVDAVSAA 296 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT---NLPVVR 375 GR +G +A + + NP+ + + G I VL P +E+ T A + L + Sbjct: 297 GRLVGTVLATVVTIVNPRYVRLGGAI----GVLPPFVEALRRTVEANAHTSALRKLDIAA 352 Query: 376 SELDHRSA-IGAFALVKRAMLN 396 S+L R +G LV ML+ Sbjct: 353 SQLGDRGVLVGMSGLVADEMLS 374 >UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2A3_9CLOT Length = 397 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 164/344 (47%), Gaps = 29/344 (8%) Query: 24 YRLIDQY---GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ---QASTGGRRAI 77 ++++D+ GPISRI I+ ++ + PA+V++IT +I+ LI E+ + + + GR+ I Sbjct: 12 FKILDKIYAKGPISRIDISNETGITPATVSEITGNMIQENLIHEIGEVIPEENKSGRKKI 71 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL--EHALLNAIAQ 135 + + IG L + L D K+ E+ L + + E +N ++ Sbjct: 72 LLGISPNHSFYIGTELSPKYISFCLTDNIGKIYKEKTIQLDNSNLEEILSEEFYINKLSS 131 Query: 136 FIDS---YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 FIDS Y K I + LPG D + I + +N+ + L ERF + + Sbjct: 132 FIDSCTNYNPK-----GIGIALPGHFDEVNKSI-ITNNSFWKNFD-ITILLERFDLPIYF 184 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 ++++ + L+E F + + ++ I V RG + NG ++ N VGEIGHI V P Sbjct: 185 ENNVKCMTLSERLFSFNGNDDNFIFFHVGRGMFCSYMYNGELYAKDNFLVGEIGHIVVHP 244 Query: 253 LGERCHCGNFGCLETIAANAAI--EQRVL------NLLKQGYQSRVPLDDCTIKTICKAA 304 GE C CG GCL+T + A I + ++L LKQ R + TI+TI KA Sbjct: 245 NGELCECGKRGCLQTYGSEAWIIKKSQILFDNSETTYLKQLVSER---NKITIETILKAY 301 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEAD 348 GD +++ +L TI + + KI+I GE+ D Sbjct: 302 RLGDEGIIKILNSAINYLSITINNLSMMIDSSKIIIHGELFNED 345 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 146/302 (48%), Gaps = 10/302 (3%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQR-KLREL 147 +G+ LG L D++ K+L + P T + +A+ + Q L EL Sbjct: 4 LGIDLGGTSIKAGLVDINGKILKKGQVPTGAGEGTTAVLKRIKNLARDLAGEQGLALGEL 63 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 I + +PG VD G +H P++ ++ L + L + + +D AL E + G Sbjct: 64 EGIGIGIPGSVDVARGLVHLAPNLFWRDFSLRDELAALLDLPVAIENDAHVAALGEMWQG 123 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A + ++V + G G+G+I +GR+ G G E+GHI++ G +CHCG GCLET Sbjct: 124 AGRGYTSLLMVTIGTGIGSGLIIDGRVHHGLFGYGAEMGHIKMVCDGRQCHCGGHGCLET 183 Query: 268 IAANAAIEQRVLNLLKQGYQSRVP-LDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTI 326 +A+ A+ + L GY S + + K I AA GD LA VI+ +LG + Sbjct: 184 LASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAACYLGTAL 243 Query: 327 AIAINLFNPQKIVIAGEITEADKVLLPAIE----SCINTQALKAFRTNLPVVRSELDHRS 382 A A+ L P+ I+I G +A +V+L I + + T LK +PV+++ L + + Sbjct: 244 ANAVLLVGPEAIIIGGGPAQAGEVILDPIRKHLAAAMGTWQLK----QVPVLQAALGNDA 299 Query: 383 AI 384 I Sbjct: 300 GI 301 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/377 (26%), Positives = 184/377 (48%), Gaps = 12/377 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 A ++ L+++LN A V +LI + G ISR IA+ ++L+ ++V+ I LI+ L+ E Sbjct: 5 SALTADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTET 64 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 S GGRR I + + + IG+ + R+ + + DL++++ + T+ Sbjct: 65 GIGTSKGGRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTV 124 Query: 126 EHALLNA-IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALE 183 L+ I+ + + AI V +PG +D +G+ P + +N + E L Sbjct: 125 GMPLIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELS 184 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHR-GTGAGIISNGRIFIGRNGNV 242 + F++ + +D A+AE+ +GA Q ++ + + + G GAG+I + +F G G+ Sbjct: 185 QTFRLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSA 244 Query: 243 GEIGHIQVEPLGERCHCG-NFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GE+GH + + N G LE +A+ + VL L ++ Q + DD + T+ Sbjct: 245 GEVGHTTLSVENDESFGPINAGSLEALAS----QITVLRLARE--QKLISADD-DVHTLV 297 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + A + + ++ +LG IA IN+FNP ++VI G I E +L+ I + + Sbjct: 298 RKAESSPEIQA-ILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATVAR 356 Query: 362 QALKAFRTNLPVVRSEL 378 +AL N +V L Sbjct: 357 RALSIAVNNTSIVPGAL 373 >UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZML3_9FIRM Length = 410 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 186/387 (48%), Gaps = 18/387 (4%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS-TGGR 74 KQ N +++LI +RI+++ ++ LA +VT I + +E+G++KE +++ + GR Sbjct: 35 KQFNRGLIFQLIATGTCNTRIELSRRTGLAKTTVTNIVAEFMEKGIVKECEEELTEVCGR 94 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 I + + IG+ + R + L L ++ E E T L + NA Sbjct: 95 NPIILKVADQAPKIIGILVFRTNIQAVLCSLDMQIFRTETIEFGELTGDIL---IQNAF- 150 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVG 193 + ID + + ++ I + G VD +G I P V++ + EA+++++ + + Sbjct: 151 ELIDRMMEEEKNILGIGIASIGPVDIRNGIILNPPRFYGVKHVPIKEAIQKKYNLPVYFD 210 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 HD ALAE FG + +D +L+ V G G+G + G +F G E+GH+ + Sbjct: 211 HDNNCAALAEKLFGIGKAEQDFLLLAVSNGIGSGFVCGGEVFHSHRGFETELGHVSINCK 270 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G +C CGN GCLE A++ + ++ LK+ +P D K ++ + + Sbjct: 271 GLQCSCGNRGCLEMYASSYVVREK----LKKITGLNLPYAD-----YFKIHDRPE--VED 319 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 ++E + + + + IN+ P+ IV+ + + + + +E IN + + N+PV Sbjct: 320 ILEEMIQDISAGLVSIINMLQPEMIVLGYDGIDWPEDYVKKLEILINDRKIAQDGWNIPV 379 Query: 374 VRSELDHRSA-IGAFALVKRAMLNGIL 399 ++ ++ +GA ALV ++ G L Sbjct: 380 KKAYFGKQAQLVGAAALVVNSIFKGEL 406 >UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AF76_LISW6 Length = 378 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 181/389 (46%), Gaps = 20/389 (5%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N ++++ N V I Q GP SR +++ L A+++ I ++LI + LI EV S Sbjct: 4 NRTVIRESNERIVLNTIAQKGPHSRALLSDTIGLNKATISDIVKKLIAQKLINEVGIGES 63 Query: 71 T--GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 T GGR+ I + + ++ V +G + + L E +P ++T+ Sbjct: 64 TNLGGRKPIMLELNAKAGFSVSVDIGYNYIDVMAQRLDGTAYKRELFPFIVIKRETIIQE 123 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + + + F+ S + ++ I + + G+V + +I + P + AL E+F Sbjct: 124 ISDILDVFLSSLPKSPFGIVGILIAIHGVVLDN--QIQFTPAYDLAGLDFSSALHEQFAC 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ ++ LA+++H + + + + +H G G+G+I N ++ G NG GEIGH+ Sbjct: 182 PVYLENEANLLAVSDH--TKEESYANLVSISIHSGIGSGVILNNELYTGINGYAGEIGHM 239 Query: 249 Q-VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 Q V G C CG GCLE A+ E+ +L+ YQ+R + + +C+A + Sbjct: 240 QIVTENGRPCPCGASGCLECYAS----EKNILDT----YQTRTGNKNALVTDLCRAFTEK 291 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 + A VI + R+L I L+NP+ I I EI+ L+P I ++ Sbjct: 292 EEEAMAVINDMVRYLATGIQNLTALYNPEIIFINSEISR----LIPDFTKQIESRLTSFT 347 Query: 368 RTNLPVVRSELDHRSAI-GAFALVKRAML 395 N+ + S L + + GA L+ + L Sbjct: 348 SKNIAIKESHLGEEAILYGAGYLIIQRFL 376 >UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PW32_CATAD Length = 396 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 154/347 (44%), Gaps = 26/347 (7%) Query: 33 ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVR 92 ++R +A Q ++ A+ I +L GL+ E S GGR A + + +GV Sbjct: 27 LTRGDVAAQLGVSVATAGTIIGELTAAGLLAETQSPRSGGGRPASQLTMRAGAPYLVGVD 86 Query: 93 LGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAIS- 151 L +FD + + P+ + + +DS Q + L +S Sbjct: 87 LAETYVIAEIFDQAMTRVGHFQTPVAPTDDDPD-----SVVGHVVDSVQGVIAALDGVSA 141 Query: 152 -------VILPGLVDPDSGKIHYMPHIQVENWG-----LVEALEERFKVTCFVGHDIRSL 199 V LPG VD + G + P NWG +R + + + ++++ Sbjct: 142 ADVAGVGVSLPGQVDREGGVSVHAP-----NWGWHGVPFTSLFHKRCDLPVLLDNPLKAI 196 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 LAE FG + D +D+++V + G G G+++ GR+ GR GE GH + G CHC Sbjct: 197 TLAEMMFGEAGDHDDAVVVNLGTGVGLGVVAEGRLLRGRTNTAGEWGHTILVADGLPCHC 256 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD-CTIKTICKAANKGDSLASEVIEYV 318 G+ GC+E AA+ +L + VP D T+ + +A D +A +E Sbjct: 257 GSRGCVEAYVGAAALLD-LLTDVDPDSPLLVPGDQAATVARLAEAVASADPVAVATLERF 315 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQAL 364 R LG +A A+N+ NP+ +V+ G ++ A + LL A+E + +L Sbjct: 316 ARPLGMALANAVNMLNPELLVVGGWVSAAFGEPLLAAVEPVVKQFSL 362 >UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus RepID=C8ZX67_ENTGA Length = 388 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/385 (25%), Positives = 176/385 (45%), Gaps = 19/385 (4%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD--QQASTG 72 +++ N AAV + I ISR +++ + L ASV++I ++LIE +KEV S G Sbjct: 8 IREQNEAAVLKTIIDNEHISRAEVSNLTNLNKASVSQIMKKLIETDFVKEVGIGDSTSIG 67 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I + ++ AI +G + L ++ + +A T+ + + + Sbjct: 68 GRKPIQLQFNHQSSLAITFDIGYNYVNGMLSYINGQRIAILEKQDILITKDNVFTTIDSI 127 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 +A+F L+ I + + G+V+ ++ I + P+ +E+ LV L +++ ++ Sbjct: 128 MAEFTPKMPPTTHGLVGICLAIHGIVNQEN--ITFTPYYDLEHIDLVSPLSQKYHTAVYI 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 ++ AL E+ F S D + + V +H G G GII NGR+ G +G GE+GH + P Sbjct: 186 ENEANLTALGEYCF--SSDSTNLLSVSIHSGIGVGIIVNGRLQTGTHGTAGEVGHSTLFP 243 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G C CGN GCLE A+N + + K+ + D K I LA Sbjct: 244 HGNLCPCGNRGCLEQYASNKVLFDTYSHYTKK----ELVNSDIFAKAIRSGEKSALELAQ 299 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 + +E++ L I F+P+++ I + +P + + + F N Sbjct: 300 QNVEFLSIGLNNVIT----FFDPEEVYINSSVYRK----IPQLTKDLQQKLTSQFTQNTK 351 Query: 373 VVRSELDHRSAI-GAFALVKRAMLN 396 + S L ++ + G L+ + LN Sbjct: 352 IKNSRLGEQAPLFGGNVLIAKNFLN 376 >UniRef50_C2BRU2 Transcriptional regulator n=3 Tax=Mobiluncus RepID=C2BRU2_9ACTO Length = 403 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 112/399 (28%), Positives = 189/399 (47%), Gaps = 26/399 (6%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ ++ N V I G IS+ +I+ ++ LAPA+V+ I R+L E +++ + Sbjct: 13 GSPSSLRVANQKRVLSAIIDAGGISQAEISRRTGLAPATVSNIVRELTEAEILRLAE--- 69 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 + GRR +I +A+GV L R + + L +++ + PLP T+ + Sbjct: 70 AASGRRGNTIAFAPEIGYAMGVSLEREQVRVGIVTLDHEIVDTQVIPLPPEANATINKEM 129 Query: 130 LNAIAQFIDSYQRKLRE---LIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEER 185 ++A F K E ++A +++ V D +Y I + L + +E Sbjct: 130 --SVALFDSMMAAKGLENAQIVAGCIVVADAVRSDGRMSNYTSMIPGLNGINLEDIAQEV 187 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 +D + ALAEH +G ++D +D + V G GAGI++ G+I G G GEI Sbjct: 188 SPFPILTENDANAGALAEHMWGVAKDVDDFVYVEASSGIGAGIMAGGKILYGTGGISGEI 247 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH + E C CG GCLE IA+ +AI + +L +P+ T++ + + Sbjct: 248 GHFPIPSHHELCKCGGSGCLEMIASVSAIMASLRSL-------EIPVH--TLRDLYRLIE 298 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +GD + I+ GR +G +A N+ NP+ IVI GE++ A + L I IN A Sbjct: 299 EGDVRVTRRIQEAGRAIGYVLAQVCNILNPKMIVIGGELSFAGESFLNQIRETINQFA-- 356 Query: 366 AFRTNLPVVRSELDHR-SAIGAFALVKRAMLNGILLQHL 403 LP ++ R SA+G+ A ++ AM + + L Sbjct: 357 -----LPDCAADTTLRLSALGSSAPLRGAMAKAVSMVDL 390 >UniRef50_B8E378 ROK family protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E378_DICTD Length = 376 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 163/327 (49%), Gaps = 29/327 (8%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 N V ++ + GP SR ++A S+L ++++I +LIE+ ++ EV + ++ GRR Sbjct: 14 NKNLVLEILIKIGPKSRAELARISKLTKTAISEIVDELIEKNILIEVGKVETSRGRRPTK 73 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFID 138 + T + + L + + + + + K+ + ++P+ ++ + Q ID Sbjct: 74 L-TINPELKVLAIDLSGLEGRVGVVNANGKIEEDRYHPIEKKED----------LFQLID 122 Query: 139 SYQRKLRE-LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF-KVTCFVGHDI 196 K + ++AIS+ +PG++D +G++ + +N+ L E L+E++ ++ D Sbjct: 123 PLLIKYKNNVVAISLSVPGIIDKYNGEVILSVGLNWKNFKLKEFLKEKYPNYPIYMEKDT 182 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV-EPLGE 255 S L+E +FG ++ + +G G GI G I G N GEIGH V + +GE Sbjct: 183 NSGLLSELWFGEGKNFNILFYLLFEKGIGLGIYYKGNIIEGFNNIEGEIGHTIVSKEIGE 242 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 +C CGN GCLE+IA+ I++++L+L L+ I I N S+ E+ Sbjct: 243 KCWCGNKGCLESIASIPKIQEKILDL--------GSLEKALINYIQDNKN---SVLQEIF 291 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAG 342 E++G L TI I P+ I I+G Sbjct: 292 EFLGISLANTIHI----LAPEAICISG 314 >UniRef50_B2J5U6 ROK family protein n=5 Tax=Cyanobacteria RepID=B2J5U6_NOSP7 Length = 319 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 109/231 (47%), Gaps = 15/231 (6%) Query: 149 AISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 AI V G VD +G + H+ EN L LEE F V+ V +D AL EH FG Sbjct: 62 AIGVSFGGPVDASTGTVRLSHHVAGWENIPLKGLLEEEFGVSVGVDNDANVAALGEHRFG 121 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A Q + + V G G G I NG+ + G G GEIGHI V+P G C CG GC+E Sbjct: 122 AGQGYDSLFYITVSTGVGGGWILNGQPWRGAGGMAGEIGHIVVDPSGPVCLCGKRGCVER 181 Query: 268 IAANAAIEQRVLNLLKQGYQSR-----------VPLDDCTIKT---ICKAANKGDSLASE 313 +A+ + Q V +L+ Q R + DD T+ T + +AA GD LA E Sbjct: 182 LASGPYMAQNVREILENEPQRRGGFRDGEILRGLAGDDLTLLTGQLVSEAAAAGDDLAKE 241 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 V+ LG I NL NPQ+ V+ G +T+A + + AL Sbjct: 242 VLHKAAWALGVGIGNVANLMNPQRFVLGGGVTKAGEDFWRVVRQVARETAL 292 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 166/339 (48%), Gaps = 10/339 (2%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 ++ N V R I P SR ++A + L+ A+V + +L++ +I EV + S GGR Sbjct: 11 IRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMITEVGFEDSAGGR 70 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA---EEHYPLPERTQQTLEHALLN 131 + IGV + + LFDL+ VLA E P +Q + H Sbjct: 71 PRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGENLPEQMVGHVAAA 130 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + + R ++ + V +PG VD +G Y P+ + L++ L E + Sbjct: 131 VGSVVAQAGIEGAR-VLGVGVSVPGQVDRATGISEYAPNWDWHDVPLLDLLTEHIAYPLY 189 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 + + +R++A+AE +FGA++ D+++V + G GAG++ G + G + + GE GH + Sbjct: 190 LDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGVSNSAGEWGHTTIV 249 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV--PLDD-CTIKTICKAANKGD 308 G CHCGN GC+ET I +LNL + +S + P D TI + + + D Sbjct: 250 LDGRLCHCGNHGCVETYVGAPGI---MLNLRELSPRSTLLHPEDQTATIAALARGVARQD 306 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 +A +V+ R+LG IA +NLFNP+ +V++ + A Sbjct: 307 PVAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAA 345 >UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7J1_9RHOB Length = 402 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/339 (27%), Positives = 153/339 (45%), Gaps = 6/339 (1%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ----AS 70 V++ N V + ++ ++R+ + + L+ A+VT IT L +RGLI EV++Q A+ Sbjct: 10 VRRQNRFVVLSTLRRHTTLARVDLGRLTGLSLAAVTSITADLKDRGLIAEVEEQPNPDAN 69 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ--QTLEHA 128 T GR + H I V+L ++ L D + AE + + Sbjct: 70 TRGRPRTYLRLRDDVAHVITVKLSVDRVSLALVDYTGHQHAEAKFMVESSDMGGDAFIAL 129 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L I + + + R ++ I+V G+V +G I + P I L L + + Sbjct: 130 LAREIKALLKTEPLRARSVMEITVATQGIVGKHNGSIIWSPTIAERQVELTAKLSKTLGI 189 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 TC + +D +A A H A + + ++V + RG G GI ++ G G E GH Sbjct: 190 TCTLYNDTNMIAEALHRQDAEKYSGNFVVVYIDRGVGMGIFIKNALYRGETGAAAEYGHS 249 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 P G C CG GCLE A+ A+ + L K+ S + I+ + A GD Sbjct: 250 PFTPDGAACRCGKKGCLEAYIADYALYREAQKLPKETSPSAMFYGPEYIQNLRARARVGD 309 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 + A +V G LG ++A I+L +P +IV+ G+ +A Sbjct: 310 AQAQKVFTDAGFALGVSLARTISLLDPSRIVLTGKAMQA 348 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 88/316 (27%), Positives = 147/316 (46%), Gaps = 16/316 (5%) Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ---TLEHALLNAIAQFIDS 139 T N +A + LG L D +LA H L R ++ T+ +++++ Q ++ Sbjct: 2 TNNLYA-AIDLGGTKIYSVLADSKGDILA--HTRLETRAREGSETVMDQMVSSVDQLLEK 58 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA---LEERFKVTCFVGHDI 196 K +L I V + G D + + + P++ W V+ L+++ + +D Sbjct: 59 SGGKKEQLAKIGVCIAGFYDWEKRLLIHSPNMA--GWSDVDVESRLQDKLGIPVIAENDA 116 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 + AL E GA Q D + + V G GAG+I++G+I+ G G GE GH+ V+P G Sbjct: 117 NAAALGESRRGAGQGSGDMVFITVSTGIGAGLITDGKIYRGSRGFAGEAGHMVVKPDGPL 176 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQS-----RVPLDDCTIKTICKAANKGDSLA 311 C CG GCLET+A+ AI + ++ G ++ T + AA K D LA Sbjct: 177 CGCGRRGCLETVASGTAIARIANEQMQNGRKTILSEITAQNSKVTAPDVFAAAKKKDPLA 236 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 EV++ +LG + +NL NPQ IVI G + EA L + I A+ ++ Sbjct: 237 QEVLQGAIHYLGIGLVNLVNLLNPQVIVIGGGVAEAGDDLFVPLRQIIAEHAVPPAAASV 296 Query: 372 PVVRSELDHRSAIGAF 387 + ++EL + + Sbjct: 297 TLRKAELGVEAGVAGM 312 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 87/335 (25%), Positives = 157/335 (46%), Gaps = 21/335 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ N + + I ++GP+SR ++ ++ L+ ASV+ + +L++ G+++E S GGR Sbjct: 11 MRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAGSVESDGGR 70 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA------EEHYPLPERTQQTLEHA 128 + + + +G +G + LFDL+ V+A E P PE +++ Sbjct: 71 PRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSPIETPKPAPELAVRSVLQG 130 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG---LVEALEER 185 L IA + +R L +A++ ++ G D + H Q W L L Sbjct: 131 LDEVIAGAGVAKERVLGLGVAVAGVVEGPADA-------VVHAQTLGWDGVPLGAMLAAG 183 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 ++ V + +L AE +FGA + D+++ V G GA +++ G + G + GE Sbjct: 184 TEIPIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTRSSAGEW 243 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH + G +C CG GCLE A+ +R ++ DD + + A Sbjct: 244 GHTTIMYGGRQCRCGALGCLEAYVGAEAVLER----YREAGGPSAATDDEEAEFVALLAA 299 Query: 306 KGDS-LASEVIEYVGRHLGKTIAIAINLFNPQKIV 339 G S +A++V+E +LG A +NL NP++IV Sbjct: 300 VGTSEVAAKVVEDTIGYLGAGFANLVNLVNPERIV 334 >UniRef50_D1AW58 ROK family protein n=7 Tax=Fusobacteriaceae RepID=D1AW58_STRM9 Length = 317 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 154/317 (48%), Gaps = 19/317 (5%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLR 145 + +GV LG + I + D +L EE +R + + N I + + Sbjct: 3 YFVGVDLGGTNVKIGILDSEYNILTEESIKTESKRGPEDTFTRIWNKIQELFTKISVDIS 62 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVE-NWGLVEALEERFK----VTCFVGHDIRSLA 200 EL I +PG V S + I +WG +E F+ T V +D+R++A Sbjct: 63 ELEGIGFGIPGPVVNKS-----IVKIAANFSWGNDFNAKELFERISGKTVIVENDVRAIA 117 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCG 260 L E+ FGAS+ ++SI++ + G AG+I NG + G +G GEIGHI V+ G +C CG Sbjct: 118 LGENLFGASKGYKNSIILPIGTGIAAGMIINGELISGNDGAAGEIGHISVDLNGYKCGCG 177 Query: 261 NFGCLETIAANAAIEQRVLNLLKQG-----YQS-RVPLDDCTIKTICKAANKGDSLASEV 314 GCLE + I + + +LKQ Y++ + + I A KGD +A + Sbjct: 178 LTGCLELFTSAKGIVREGIKVLKQEKKGILYETFKDDFEKLEAFHIFLEARKGDEVAEII 237 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 ++ L I + INL NP+ IVIAG + ++ +++ ++ + AL ++P+V Sbjct: 238 VDNFCNKLAYGIGVLINLVNPEIIVIAGGLAKSSDLIIAGVKKHLPKYALN-MSIDIPIV 296 Query: 375 RSE-LDHRSAIGAFALV 390 +SE LD GA +L+ Sbjct: 297 KSELLDSAGVKGAASLI 313 >UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O82844_TETHA Length = 386 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/376 (25%), Positives = 178/376 (47%), Gaps = 28/376 (7%) Query: 27 IDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE--VDQQASTGGRRAISIVTETR 84 I Y ISR ++ + + L +SV+ IT+ L+++ +I E V ++GGRR I + Sbjct: 18 IIDYQEISRAKLTKITNLTKSSVSDITKTLLDKDIIYESKVGNSTNSGGRRPIYLKFNEN 77 Query: 85 NFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKL 144 + IG+ +GR+ L ++ ++ E+ Y + + L I Q + Sbjct: 78 SALVIGIEIGRNYIKGGLSYINGSLIREKSYTQITINRYNIIDTLSQIIQQLCSDLPKSS 137 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 +I + V + G + + KI ++P+ ++ L E L + F+ ++ + AL E+ Sbjct: 138 YGIIGVGVAIHGSIYKN--KITFVPYSDMDEIELQEKLSSHTHLPVFLINEANASALGEY 195 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 F + + E I + + G GAGII G ++ G+NGN GEIGH + P G C CGN GC Sbjct: 196 TF--TSNSESLISISIQDGIGAGIIEKGILYSGKNGNAGEIGHTTLYPDGRLCPCGNHGC 253 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 LE A+ + + + L + Y C + + + + EVI+ + ++ K Sbjct: 254 LEQYASTTILYKEISKLKEVEY--------CDLHQVINYWHNDE----EVIQLL-KNNAK 300 Query: 325 TIAIAIN----LFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDH 380 I+I +N +++P+ +VI E+ +P + + I + N+ + + L+ Sbjct: 301 LISIGVNNIVSMYDPETVVINNELYRE----IPDLINVIEKHLTRRNNRNVFIKNTSLED 356 Query: 381 RSAI-GAFALVKRAML 395 ++ + G +LV R L Sbjct: 357 KTTLYGCLSLVIRQFL 372 >UniRef50_B9YHG7 ROK family protein n=2 Tax=Nostocaceae RepID=B9YHG7_ANAAZ Length = 345 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 116/257 (45%), Gaps = 18/257 (7%) Query: 149 AISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 AI V G VD +G + H+ EN L + LEE + V V +D A+ EH FG Sbjct: 85 AIGVSFGGPVDAATGLVRLSHHVPGWENIPLKQLLEEEYNVPVSVDNDANVAAVGEHRFG 144 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A Q + + + G G G I NG+ + G G GEIGHI V+P G C CG GC+E Sbjct: 145 AGQGYDSLFYITISTGVGGGWILNGKPWQGAGGMAGEIGHIVVDPTGPVCLCGKRGCVER 204 Query: 268 IAANAAIEQRVLNLL-KQGYQSRVP-------------LDDCTIKTICKAANKGDSLASE 313 +A+ + Q LL K+ + S LD T + + AA GD LA E Sbjct: 205 LASGPYMAQNARELLEKEAHNSPTSTRGEILKYLVGNDLDLITGQIVSAAAAHGDELARE 264 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 V+ LG I NL NPQ+ V+ G +T+A + AL N V Sbjct: 265 VLYKAAWALGVGIGNVANLMNPQRFVLGGGVTKAGDSFWATVRKVAQETALP--EVNFEV 322 Query: 374 VRSEL-DHRSAIGAFAL 389 VR+ L D GA AL Sbjct: 323 VRALLGDDAPLWGAVAL 339 >UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUP6_ALKMQ Length = 392 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 181/389 (46%), Gaps = 17/389 (4%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 D +K++N + + +I Q I++ +IA +L+ ++T QLIE GL++E STG Sbjct: 10 DQIKEINRSNIINMIKQKYEITKHEIAVALKLSIPTITTNINQLIEEGLVEEAGVGNSTG 69 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHALLN 131 GR+ + + ++GV + I L DL++ ++ E + + + + + + + Sbjct: 70 GRKPMILKLVENARFSVGVDVSPDKVRILLIDLNNTIIDEASFDYVKDLSFKGVLDEVKT 129 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 I +F+ +++ + + LPGLVD D + P+I V ++ E ++ ++ F Sbjct: 130 EIERFMTQNNISKNKILGVGISLPGLVDEDRLILENAPNIGVRDFNFQE-FQDSLQLRVF 188 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 + ++ A AE G + + + + V + G G GII N I+ N GE GH+++ Sbjct: 189 IENEANIAAYAEKEIGKTVNMRNVVYVSITEGVGTGIIVNQHIYKSSNKKAGEFGHMRIS 248 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 C+CG GC E A+ A L + Y+ L T+ I + + ++ Sbjct: 249 DEPRPCNCGRTGCWELYASKKA--------LSRYYEESTGLKVSTLDEIF--SEESFNMP 298 Query: 312 SEVIEYVGRHLGKTIAIAINL---FNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 S V E +GR++ N+ NP+ ++I GE+ + +K +L I N ++ Sbjct: 299 S-VKEAIGRYIDCLFIGIENIILGLNPEFVIIGGELGKYEKEMLTLINGRNNMKSSFVEY 357 Query: 369 TNLPVVRSEL-DHRSAIGAFALVKRAMLN 396 VV S L D S IGA L + N Sbjct: 358 EGTKVVFSALKDKGSLIGAALLPLEDLFN 386 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 94/321 (29%), Positives = 148/321 (46%), Gaps = 21/321 (6%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA---LLNAIAQFIDSYQRK 143 +AIGV LG + I + +L E L + Q+ E+ + +AI YQ Sbjct: 3 YAIGVDLGGTNLRIAAVEERGTLL--EKVTLGTQVQRGREYVVGQMTDAIRHVTTKYQDH 60 Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALA 202 + LI I + +PG +D D+G + P++ N+ + + +E R + +D + A+ Sbjct: 61 GK-LIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGTKVILENDANAAAMG 119 Query: 203 EHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNF 262 E + GA +D +D ++ + G G GII GR++ G NG GE+GH V P G C CGN Sbjct: 120 EKWLGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHHTVLPDGHICGCGNH 179 Query: 263 GCLETIAANAAI----EQRVLNLLKQGYQSRVPLD-DCTIKTICKAANKGDSLASEVIEY 317 GCLE A+ A+ + V N L + D + + K I + A +GD A E+ Sbjct: 180 GCLEQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQLAIQGDKAAQEIFNT 239 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAFRTNLPVVRS 376 VG +G +A +N N VI G + A D P +E + +R P + Sbjct: 240 VGHSIGIAVANMVNALNFPMYVIGGGVASAWDAFHNPMMEEVRKRSFI--YRVTAPEAVA 297 Query: 377 ELDHRSAIGAFALVKRAMLNG 397 R+ +V RA+L G Sbjct: 298 AGQKRT------IVTRALLGG 312 >UniRef50_A4XCV6 ROK family protein n=2 Tax=Salinispora RepID=A4XCV6_SALTO Length = 381 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 100/364 (27%), Positives = 173/364 (47%), Gaps = 19/364 (5%) Query: 26 LIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA-ISIVTETR 84 L+ + SR + E Q+AP++VT + R+L+E G++ E STGGR I + ET+ Sbjct: 16 LLSRGAATSRADLVEALQVAPSTVTAMVRRLLEEGVLAEEGMGRSTGGRPPRILRLRETK 75 Query: 85 NFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKL 144 A+ GRH A + L + E + A++ A + + Sbjct: 76 GVLAVAELGGRH-ARVGLCTPGGGLRTTEEVAIDIAAGPEEVFAVVGATFTRLLAATTPD 134 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA---LEERFKVTCFVGHDIRSLAL 201 + L+ + + LPG V G++ + ++ W V+A L + F+V V +D ++ A+ Sbjct: 135 QVLLGVGLALPGPVGFPEGRL--VGPARMPGWSGVDAGAHLTDHFQVPVIVENDAKAAAM 192 Query: 202 AEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER-CHCG 260 E Y Q+ D I V+ G GA +++ G+I G G G++ H++V GER C CG Sbjct: 193 GE-YVTRRQETGDMIYVKAGTGIGACLVTGGQIHRGGRGLSGDVTHVRVADSGERHCSCG 251 Query: 261 NFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGR 320 + GCLET+A+ AA+ ++ L +QG + T+ I A D ++ + G Sbjct: 252 SQGCLETVASGAALARQ---LAEQGSSA------VTVPEIITAVGDADPTVVTMVRHAGG 302 Query: 321 HLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDH 380 LG ++ +N NP +VI G ++ D V + A S + + L + +L + S Sbjct: 303 LLGVALSGLVNFLNPDTVVIGGALSSLD-VYVAATRSMLYERCLPSMTQSLTIEASGAGS 361 Query: 381 RSAI 384 +A+ Sbjct: 362 NAAL 365 >UniRef50_D2B9Z8 Transcriptional regulator, ROK family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B9Z8_STRRD Length = 407 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 18/348 (5%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 V ++ + GP SR ++ + L+ +++ I L+ R + + Q+ + G R ++V Sbjct: 18 VLAILVERGPCSRRELENATGLSRTTMSAIVADLVRRRAVADDAQRPAPGRGRPTTLVRL 77 Query: 83 TRNFHA---IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE-HALLNAIAQFID 138 N HA +GV LGR ++ + D++ VLA P+ + ++ A L+ + + Sbjct: 78 --NPHAAAAVGVELGRGHVSVAVADIARTVLAHVTEPIGMESGLSVRMDAALSLLKRVAA 135 Query: 139 SYQRKLRELIAISVILPGL-VDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIR 197 + L L A + L G DP +G + V + L E L V ++IR Sbjct: 136 GRRLALEGLAAAGLGLWGHHPDPRAGGGDPAGDLVVTD--LAERLGGTLDVPVTWDNNIR 193 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 A+AE Y S C D + + + G G+G++ NG + G +G GEIGH+ VEP G C Sbjct: 194 LAAVAERYTVESPACADLVYIALSHGVGSGVVINGTLARGASGTAGEIGHVSVEPSGPPC 253 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEY 317 CG GCLE + A+ RV V D + + A ++GD +V+++ Sbjct: 254 WCGGRGCLEQYLSIDAVLGRV---------RAVAPDVADVAGLVAALDRGDRSVRDVVDW 304 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 LG+ + L +P ++VI GE+ + LL + + + Q L Sbjct: 305 SAELLGRALGTVAILLDPHRVVIGGELADLGDHLLDPVRASLARQKLS 352 >UniRef50_D2PPN2 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PPN2_9ACTO Length = 402 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 170/380 (44%), Gaps = 20/380 (5%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 L + + L+ GP +R IA L+PA+VT++T+ LI RGLI+E++ S GGR A Sbjct: 12 DLVPSGIVGLLGTQGPTARTAIARTLGLSPATVTQVTKDLIARGLIEELESVPSNGGRPA 71 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKV---LAEEHYPLPERTQQTLEHALLNAI 133 + A+G ++ I +L V ++ ++ P + L L + Sbjct: 72 RLLGLVQDAGVALGAKVTADHVAIVTVELDGTVRSSVSHDYDPGADDALPRLGRILAQEV 131 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 A D L+ + V +PG VD + I P + + + +L V Sbjct: 132 AALDD-------RLLGVGVGVPGSVDSQASGIVDAPTLSWQAAPVGPSLRAAIGSPVLVD 184 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV--- 250 +D+ +LA AE +G + ++V + RG G GI+ +G I+ G NG GEIGHI V Sbjct: 185 NDVNTLAAAERLYGIGRAHSSYLVVTIGRGIGCGIVVDGGIYRGANGGAGEIGHIPVWHD 244 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 E C CG+ GCLE A + + + G + +P T+ +AA GD Sbjct: 245 EQDQLPCTCGSTGCLEAHVGAAGLCRTARDRGVIGPRGTLP-------TLLRAAATGDEA 297 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 A +V G LG+ +A I+ +P+ +V+ GE + + E L A + Sbjct: 298 ARQVFAAAGAMLGRALAGVIHTIDPEVVVLMGEGVDGWQYWQTGFEPSFRRSLLPARKAV 357 Query: 371 LPVVRSELDHRSAIGAFALV 390 VV + + A GA +LV Sbjct: 358 PVVVEPWTEDQWARGAASLV 377 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 92/345 (26%), Positives = 162/345 (46%), Gaps = 19/345 (5%) Query: 11 NVDLVKQLNSAAVYRLIDQYGP-ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 N+D V N V I + +SR+++A + L+ +++ ITR+L++ GL++E +Q Sbjct: 15 NLDRVGGFNDTVVLDAIRRAEQRLSRVELAAATGLSGQAISNITRRLLDAGLVREAGRQK 74 Query: 70 STG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S G G+ + E +A+GV L T+ L DL+ +V+A P + A Sbjct: 75 SAGLGKPRTLLELEPTGQYAVGVHLDPAVVTVVLLDLTGQVIARRRAQTPAADGPDVLIA 134 Query: 129 LLNAIAQFIDSYQRKLRE-LIAISVILPGLVDPDSGKIHYMPHIQVENWGLV---EALEE 184 + A + + + R+ ++ + + PG +D D G + P++ W LV +AL + Sbjct: 135 GIAATVEDVIAEAGVPRQRVVGVGIAAPGPIDVDRGVVVDPPNLTA--WHLVPLRDALRD 192 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 R + + D+ + A AE + G + + G GAG++ + G + NVGE Sbjct: 193 RTGLPVLLDKDVTAAASAEKWAGGPNGRGSFVFFYLGTGIGAGLVIGDEVVRGSSSNVGE 252 Query: 245 IGHIQVEPLGERCHCGNFGCL-ETIAANAAIEQRVLNLLKQGYQSR-VPLD-----DCTI 297 IGH+ V+P G C CG GC+ E+ ++Q V G +R + LD D Sbjct: 253 IGHVIVDPEGPLCFCGRRGCVGESSRPRYLVQQAV----DAGVVARGIDLDDRHAVDVAF 308 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG 342 +C AA G A E++ + + K + NL + +++V G Sbjct: 309 TALCTAATGGPGAAREIVTALAERIAKVVEDIANLLDLERVVFGG 353 >UniRef50_D1AFT6 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AFT6_SEBTE Length = 316 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/318 (26%), Positives = 161/318 (50%), Gaps = 12/318 (3%) Query: 86 FHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ-QTLEHALLNAIAQFIDSYQRKL 144 + IG+ LG LFD + V+ + + + +E L + I D ++ Sbjct: 1 MNYIGIDLGGTKILGALFDDNGTVIYKNKKKTKAKNGIKAVEEQLFSLIDDLTDKSGKE- 59 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 E+ AI + +PGLVD +G + + P+I + N+ + + + +++K+ FVG+D+ L E Sbjct: 60 -EIKAIGIGVPGLVDVKTGTVKFAPNIAMNNYPIGDLIRDKYKIDVFVGNDVNVGTLGEW 118 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + + I + V G G GII + +++ G G GE+GH+ ++ G C CG+ GC Sbjct: 119 KYSPEGKSSNFIGIFVGTGIGGGIIIDNKLYTGSGGVAGELGHMTIDSNGAICGCGSRGC 178 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK------AANKGDSLASEVIEYV 318 LE +A+ I+ + +K+G + + + + I K A +KGD + E +E Sbjct: 179 LEAVASKTGIQAEIKARIKRGEDTDIK-ESLEKEGILKSGPLRAAYDKGDIVVRETVERA 237 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 ++LG +A IN+F+P+ +V G I E ++LP ++ + A+++ N+ +++ Sbjct: 238 AKYLGVGVANLINIFDPEAVVFGGGVIEELGDIILPIVKEEASRYAMRSIFENVKFEKAQ 297 Query: 378 L-DHRSAIGAFALVKRAM 394 L D +GAF L + + Sbjct: 298 LGDDAGIMGAFVLAQEGV 315 >UniRef50_D1ANS5 ROK family protein n=2 Tax=Fusobacteriaceae RepID=D1ANS5_SEBTE Length = 381 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/358 (25%), Positives = 171/358 (47%), Gaps = 21/358 (5%) Query: 33 ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVR 92 I++IQ+++ + +VT +LI+ GLIKE S GR+ + ++N + IG+ Sbjct: 22 ITKIQLSKFLDVTIPTVTLYLNELIKMGLIKESGVINSEAGRKPVVFEINSQNSYTIGIE 81 Query: 93 LGRHDATITLFDLSSKVL--AEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAI 150 + + T+ + DL ++ ++E+Y + L+ L N + + I K+ +L+ I Sbjct: 82 IRQELITVIILDLELNLIYKSQENYNI-----NNLQEELKNLVYKSIVHSNIKMEQLLGI 136 Query: 151 SVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQ 210 + PG+V+ K P + ++ + L E L+E F + ++G++ A AE+ G+S+ Sbjct: 137 GIAFPGIVNDRKLKFEESPIVDIKEYSL-EGLKESFNIPIYIGNEADYAAYAENLIGSSK 195 Query: 211 DCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAA 270 ++SI + VH G G GII ++ G + GE+GH+ +E G C CG GC E + Sbjct: 196 KYKNSIYLSVHEGIGGGIILENSLYSGGLQHAGEVGHMVIEYKGRECECGRHGCWEKYVS 255 Query: 271 NAAIEQRVLNLLKQGYQSRV-PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIA 329 + I + ++K + V PL D + NK D + ++ +L I Sbjct: 256 SNIINK----IIKDNSLAGVDPLLDIYL-------NKSDDVIFRQMDEYFDYLAAGIMNL 304 Query: 330 INLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE-LDHRSAIGA 386 +F+ I+I G + +K + + I + K + +V + L SAIGA Sbjct: 305 FLIFDLDCIIIGGILAPYEKQIQNLLIEKIKNENCKLEKNAEKIVFPQLLTTASAIGA 362 >UniRef50_A9B0V9 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0V9_HERA2 Length = 336 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/307 (28%), Positives = 136/307 (44%), Gaps = 4/307 (1%) Query: 85 NFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKL 144 N +GV +G L D ++V A P T +L +AI + + + Sbjct: 10 NGWRLGVDVGGTKIATLLVDGDNRVWASVQRPTDTATPDHALKSLADAIWETLKQADLPI 69 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 R L I + +PG VD SG + + ++ + L + F C + +D+R+ AL Sbjct: 70 RLLAGIGIGIPGQVDTQSGIVRHAVNLGWQAVDLRGFINATFGTACVIENDVRAAALGIQ 129 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + + + + V + G AG+I +G ++ G +G GEIGH + RC CGN+GC Sbjct: 130 RYWLAGSIDSMLYVSIGTGIAAGMILDGTVYRGSHGMAGEIGHARFGSSTIRCRCGNYGC 189 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIKTICKAANKGDSLASEVIEYVGRHLG 323 LE I A AI +LL S++ LD T + AA GD LA V VG L Sbjct: 190 LEAIVAGPAIANYAHSLLSTFPHSQLHQLDSITTPAVYAAAEAGDDLALAVAHMVGEQLA 249 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT--QALKAFRTNLPVVRSE-LDH 380 + + + ++ IV+ G ++ A IE ++ Q + LP R + LD Sbjct: 250 QALYTMVLAYDCDHIVLGGGVSRAGSAFFAPIEQALDVLRQQSSLATSLLPTGRVKLLDR 309 Query: 381 RSAIGAF 387 A GA+ Sbjct: 310 DFAAGAW 316 >UniRef50_C0ZA86 Putative glucokinase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA86_BREBN Length = 328 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 153/320 (47%), Gaps = 11/320 (3%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLR 145 +AIG+ LG + D +L + + E Q + + + + +D L Sbjct: 7 YAIGIDLGGTKIIAAIVDEHGNILRQANAATQTEEAAQAVIGRIGDLVQTVLDESGINLS 66 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 + I + G++D + + ++ + + L+ERF V + +D + A+AE Sbjct: 67 RIRGIGIATAGIIDTQRQMVIFASNLNWSDVPIGAILQERFGVAVQLINDANAAAVAEWA 126 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 FG+++ +D I V V G GAGIIS GR+ G + GE GHI ++P G C CGN GCL Sbjct: 127 FGSARGTKDLIYVTVSTGVGAGIISGGRLITGVGDSAGEFGHISLDPEGPLCVCGNRGCL 186 Query: 266 ETIAANAAIEQRVLNLLKQGYQSRVPLDD------CTIKTICKAANKGDSLASEVIEYVG 319 E + A+ R L QG S + +++ T K + +AA +GD L+ +++ G Sbjct: 187 ENYTSGLALASRAREQLLQGATSSLLVENGNDLSRITAKEVGEAAVRGDLLSMTLMKEAG 246 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT----NLPVVR 375 +LG + I+LFNPQ IV+ G + + ++LL ++ I +++ L + Sbjct: 247 YYLGVGLTNLIHLFNPQVIVMGGGVMKNGQLLLAEAKNVIRERSISRMANQASIQLTTIG 306 Query: 376 SELDHRSAIGAFALVKRAML 395 +E A G + +R M+ Sbjct: 307 AEAGVLGAAGMYYPSEREMV 326 >UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WP29_ACTMD Length = 410 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/348 (25%), Positives = 172/348 (49%), Gaps = 26/348 (7%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 V+ LN+ V R + P +++Q+A ++ L+ A+V+ + +L + G++ EVD+ G+ Sbjct: 23 VRALNTRRVLRAV-MVLPATQVQLARRTGLSQATVSGVVGRLQQEGVV-EVDEGEGERGK 80 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE--HYPLPERTQQTLEHALLNA 132 R + A+G+ +G + L + ++ + + + + R + + Sbjct: 81 R---VRVAPMRGAAVGIEVGHDRLIVALRRIDNEEVLHQGGNRLVVGRDDRAWVGEAVRL 137 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVEN-------WGLVEALEER 185 I ++S ++++I + LP VDP G+++ E+ W EE Sbjct: 138 IDDLLESTGMVAADVVSIGLGLPAAVDPRRGRVNQSVTAMKEDLRGNPATW-----FEEH 192 Query: 186 FK-VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + V V ++ A E+ +G +D E + V+ G GAG++ G +F GR+G GE Sbjct: 193 YPGVPVVVDNEANFAAYGEYTYGVGRDAEVLLFVKASTGIGAGLVIGGTVFRGRHGFAGE 252 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS-RVPLDDCTIKTICKA 303 +GH+ ++P G C CGN GCLET+ + R++ ++Q Y+ RV L T+ + + Sbjct: 253 VGHLTMDPNGLVCRCGNRGCLETLVSGP----RLVEEVRQAYRGHRVDL-PMTLAGLIER 307 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVL 351 A D + V++ GR++G +A N+ NP +V+ GE+ EA ++ Sbjct: 308 ARAHDPVCVRVLQDAGRNIGLALARVCNIVNPDLVVLGGELGEAGDLV 355 >UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JL48_AGRRK Length = 345 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 129/251 (51%), Gaps = 11/251 (4%) Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWG---LVEALEERFKVTCFVGHDIRSLALAEH 204 I I + PG +DP++G + P + W L + L RF++ + +D + A+ E Sbjct: 64 IGIGIGAPGPLDPEAGVVIAAPTLT--GWNEVPLADILSSRFQLPVRLENDANAAAVGEW 121 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 +GA + + V V G G G+I++ RI GR G EIGH+ + GERC CG GC Sbjct: 122 RYGAGRGARSIVFVTVSTGIGGGVIADSRILHGRRGLAAEIGHMTITNEGERCFCGAVGC 181 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRV----PLDDCTIKTICKAANKGDSLASEVIEYVGR 320 E +A+ A+ ++ ++ S + D T + + AA GD+LA E++ R Sbjct: 182 FEAVASGTALGRQATARTRRSDGSMLRKLSANADVTGRHVVDAARNGDALALELLNAEAR 241 Query: 321 HLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD- 379 LG ++L++P +V+ G I+ +L I + I +A+ A+R ++P+V ++L Sbjct: 242 WLGIGFTNLLHLYSPDVLVMGGGISHGFDLLHDTIMATICDRAMPAYR-DVPIVAAQLGR 300 Query: 380 HRSAIGAFALV 390 H IGA +L+ Sbjct: 301 HAGLIGAASLI 311 >UniRef50_C8QA05 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8QA05_9ENTR Length = 377 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/310 (26%), Positives = 144/310 (46%), Gaps = 23/310 (7%) Query: 34 SRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ-QASTGGRRAISIVTETRNFHAIGVR 92 SR +A+ L+ +V+ I L+ +GLI E+ + GR I I + G+ Sbjct: 30 SRQDLAQALTLSKNTVSLIVDDLLAQGLINELGPVSVAAAGRPKIEIALRPEKLKSAGIM 89 Query: 93 LGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISV 152 + R + D S+V+AE+ + RT + ALL + + + + ELI +++ Sbjct: 90 VERQAIHWRVCDYFSQVIAEQTW----RTDTSDPAALLQELVECCQALRAAHPELIGVAM 145 Query: 153 ILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDC 212 PG+VDP G +H+ H+ ++ L+ L + + +++++ AL A Sbjct: 146 GFPGIVDPLRGWMHFSSHLGWQDVDLLTPLRRGIDLPLRIMNNVKAAALLSVQQLALDKS 205 Query: 213 EDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANA 272 + +R+ G G ++ +G +F G + GE+GH+ V+P G RC CG GCLE + + Sbjct: 206 QSHFYLRIAEGIGGALVQHGEVFTGSSWTAGEVGHLTVQPNGARCSCGRLGCLEALVSQP 265 Query: 273 AIEQRVLNLLKQG--YQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAI 330 AI+Q+ L K G +Q R + ++ V+ G LG ++ + Sbjct: 266 AIQQQ-LTRRKPGLRWQQR---------------DSEPAIVDAVMGEAGAQLGSALSQVM 309 Query: 331 NLFNPQKIVI 340 L NP I+I Sbjct: 310 LLLNPASIMI 319 >UniRef50_Q0SHP3 Glucokinase n=22 Tax=Actinomycetales RepID=Q0SHP3_RHOSR Length = 337 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 14/272 (5%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELI 148 IG+ +G ++ D + +VL P P + + LE+ L A+ + + ++ Sbjct: 23 IGIDVGGTSIRASVVDSAGEVLDSLQSPTPA-SAKALENGLDRAVRELSARH-----DVA 76 Query: 149 AISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGA 208 A+ + + G + PD + + PH+ + L +R + + HD+ + A AEH FGA Sbjct: 77 AVGLAVAGFITPDRTTVRFAPHLPWVGAPVGRDLGQRLGLPVILEHDVNAAAWAEHRFGA 136 Query: 209 SQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETI 268 + + +++ + G GA ++++GR++ G +G E+GHIQV P G C CG GC E Sbjct: 137 AAGGRNVVMLAIGTGIGAALLADGRLYRGSHGVAPELGHIQVVPDGRPCACGKHGCWERY 196 Query: 269 AANAAIEQRVLNLLKQGYQSRVPL--------DDCTIKTICKAANKGDSLASEVIEYVGR 320 + A+ + LL + L T + I AA GD LA E + R Sbjct: 197 CSGTALVDTAIELLAADPATSTVLARDVAVDPGALTGRRIAGAAQDGDPLALETMREFAR 256 Query: 321 HLGKTIAIAINLFNPQKIVIAGEITEADKVLL 352 LG +A+ ++++P +VIAG + + + + Sbjct: 257 WLGVGLALIGDVYDPDLVVIAGGVASSSPLFI 288 >UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L9I3_RUMHA Length = 393 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/340 (23%), Positives = 153/340 (45%), Gaps = 12/340 (3%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV---DQQAS 70 + Q N + + I + P++R IA+Q+Q+ PA+VT I+ I+ G+I+E+ D A Sbjct: 1 MTNQENRSTILEYIFRNAPVARSTIAKQTQITPATVTSISGNFIQEGIIQEIGAEDNAAD 60 Query: 71 -TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 + GR+ I + +A+G+ ++ +L + + + + E + + Sbjct: 61 CSPGRKRILLDIVPDKVYAMGIEFTSRHIRFSICNLRGDTVFQSSFSVKETDNGNITDFI 120 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + ++ + + +PG +D K+ + + G EAL++R + Sbjct: 121 AEKAEDILKENPSFAASIVGMGIAVPGHIDAHQDKVITNSSLCPQFSG--EALKKRLNIP 178 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 +++R +A + F S + V G +I N ++F G N GEIGH Sbjct: 179 IICENNVRCMAFGRYLFDRSSP-DTFAFFHVGAGMFCALIENSKLFQGTNYYAGEIGHTI 237 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTICKAA 304 V P G++C CG +GCL+T + + + L + + +P D TI+ I A Sbjct: 238 VNPNGKKCECGKYGCLQTYCSETWLLKYCRLLYESNADTILPSLKPCADALTIEDISNAF 297 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEI 344 + GD+L I ++LG T++ + NP KI + G + Sbjct: 298 SLGDTLVGNYISTALKYLGITVSNLAIITNPDKIYLHGNL 337 >UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavida DSM 17836 RepID=D2Q094_9ACTO Length = 423 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 30/343 (8%) Query: 69 ASTGGRRAISIVTETRNFH-----AIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 A TG R+ E R IG+ +G + D +L P + + Sbjct: 8 AGTGEGRSWGYREEGRAMALTQALTIGIDIGGTKVAAGVVDPEGNILDRLRRDTPTKDPK 67 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 E +AIA+ + + + ++IA+ + G VD + + PH+ + L +A+E Sbjct: 68 ETE----DAIAEVVHDLESR-HDVIAVGIGAAGFVDGTRSSVLFAPHLAWRHEPLRDAVE 122 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 R + V +D + A +E FG Q + V + G G I+++G + G+ G G Sbjct: 123 RRLGLPVVVENDANAAAWSEWRFGGGQGESHLVCVTLGTGIGGAILNDGALQRGKFGIAG 182 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAI--EQRVL---------NLLK--QGYQSRV 290 E GH+QV P G RC CGN GC E A+ A+ E R L NLL+ +G R+ Sbjct: 183 EFGHMQVVPGGHRCECGNRGCWEQYASGNALTREARELALSGSPVAHNLLRAAEGDPRRI 242 Query: 291 PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKV 350 + + A GD +A E++E VGR LG +A +P VI G +++A ++ Sbjct: 243 -----NGPMVTELAKDGDPVAVELLEDVGRWLGIGLANLAAALDPGTFVIGGGVSDAGEL 297 Query: 351 LL-PAIESCINTQALKAFRTNLPVVRSELDHRSA-IGAFALVK 391 LL PA E+ T + FR +VR+ L + +GA L + Sbjct: 298 LLAPAREAFKRTLTGRGFRPEARIVRAVLGPEAGMVGAADLAR 340 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 14/332 (4%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I N ++++ N V I P+SR ++A+Q L A+++ I ++L+E+ I+E+ Sbjct: 17 IANQEMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGSA 76 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 ++ GR+ I + A+ + + L +L +V +E +P Q L Sbjct: 77 QTSMGRKPILLEFNKAYGFALSLEIQPQQIIALLTNLKGEV--QEIKKIPFCPQDNLLQH 134 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L + +I ++I +S+ + G+V + +I + P+ + GL L+E F++ Sbjct: 135 LEQILNFYIRENTAFKNKIIGVSIGIYGVVQKN--EILFTPYYPLPKSGLGTHLQETFQI 192 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 FV ++ L E F ++ I + VH G G GI+ NGR++ GR+G GE GH Sbjct: 193 PVFVENEANLSVLGEAAF--HHKYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGEFGHT 250 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + P G+ C CGN GC E A+ AI + Y +R ++ TI K + Sbjct: 251 ILFPDGKPCPCGNQGCFELYASQRAI--------LENYAARQKKENVTISEFLKDYDANL 302 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVI 340 LA E+++ +++ I IN FN IV+ Sbjct: 303 PLAHEMMDLFVKYISIGINNIINTFNTDIIVL 334 >UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG9_9FIRM Length = 322 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/312 (26%), Positives = 153/312 (49%), Gaps = 11/312 (3%) Query: 93 LGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA---IAQFIDSYQRKLRELIA 149 +G T LF K++ + Y T + E N + ++ +Q L++++ Sbjct: 10 IGGTKTTGALFTEDGKIVDDYTYVSKSPTFEGKEAVYQNTRGVLDHIVERFQVDLKDVLG 69 Query: 150 ISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGAS 209 I V PG +D G I + P ++ +N+ LVE L F++ + +D ALAE G + Sbjct: 70 IGVGCPGPLDSRKGIIIHAPLMRWKNFPLVERLSHDFQLPVALDNDGNLGALAEQRCGVA 129 Query: 210 QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIA 269 + ++ + + V G G G++ NG I+ G++ GE+GH+ ++P G C CG GC E A Sbjct: 130 KGLDNVMYMTVSTGCGGGLVINGEIYHGKHDGAGEVGHMSIDPEGLDCPCGGKGCFELYA 189 Query: 270 ANAAIEQRVLNLLKQGYQSRV----PLDDCTI--KTICKAANKGDSLASEVIEYVGRHLG 323 + A+ +R+ + G +S V D I + + +AA KGD+ A + +LG Sbjct: 190 SGTAMNRRMREDMAAGKKSMVFELAQHDPKKIEGRLLTEAAEKGDTYALAFFKQQAYYLG 249 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA 383 I+ NL++P+ +V+ G +T+A + I ++ L+ + + S ++ R Sbjct: 250 VGISNLFNLYDPEVLVLGGGVTKAKAFYHDEMMRVIRSRCLQPVEDD-SIRYSVMNDRVV 308 Query: 384 I-GAFALVKRAM 394 + GA+ L+K + Sbjct: 309 LYGAYHLIKDKL 320 >UniRef50_B4D7W0 ROK family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7W0_9BACT Length = 359 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 133/275 (48%), Gaps = 6/275 (2%) Query: 113 EHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ 172 +H + E T+ AL+ I I + + E+ A+ V LPG +D +G +H + Sbjct: 73 QHGDVIETTEHHGAPALIEEILGVIAALRITHPEVAALGVGLPGFIDSLNGIVHEL--TN 130 Query: 173 VENWG---LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGII 229 V W L L+ER + + +D +++A E +GA++ C + + + G G ++ Sbjct: 131 VPGWDEVPLRRILQERTGLPTIIENDAKAMAYGEFKYGAAKGCRFVLCITLGTGVGGALV 190 Query: 230 SNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR 289 +GR++ G GE+GH ++ G N G LE N I R L K ++ Sbjct: 191 LDGRLYRGAQLAAGELGHASIDYRGTPGLYKNPGDLEMFVGNHRIAARASQLYKVAGRN- 249 Query: 290 VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 VP+++CT + KAA GD +A ++ E VG LG + I L NP IVI G + +A Sbjct: 250 VPVEECTPYDLEKAARNGDPVAKQMWENVGLELGCALVNMIWLLNPDAIVIGGGVAKAGD 309 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI 384 +L I+ I + L F NL VV + L + + I Sbjct: 310 LLFGPIQRTIRERTLPLFNQNLRVVPAALGNEAGI 344 >UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSD8_ACIC1 Length = 420 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 116/397 (29%), Positives = 189/397 (47%), Gaps = 22/397 (5%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 D V++L A + LI + ++R ++ + S ++ + L+ GLI E + STG Sbjct: 10 DHVEEL--AQLLALIRRGSAVTRSELVQSSGFGRTAIARRLDHLMALGLIAESEPLPSTG 67 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA--EEHYPL---PERTQQTLEH 127 GR + + LG + DL +VL+ EE + + PE T LE Sbjct: 68 GRMPRGVYFRADAGRLLVAELGATSIAAGICDLDCRVLSSREEAWDIAAGPESTLARLE- 126 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERF 186 ALL+ + + +Q K+ I V LPG ++ +G+ P + + + + E L +RF Sbjct: 127 ALLS---ELLRDHQAKV---WGIGVGLPGPIEFATGRPVSPPIMPGWDRYPVRERLAKRF 180 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 +V +D+ LAL E G + D I +++ G GAGI+S GR+ G G G+IG Sbjct: 181 SAPVWVDNDVNVLALGELRAGVGRAHSDLIYIKIGTGIGAGIVSGGRLHRGAQGCAGDIG 240 Query: 247 HIQV-EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQG-----YQSRVPLDDCTIKTI 300 H+ V + C CGN GCLE +A AA+ +R ++G Q D T TI Sbjct: 241 HVAVTDDQAVVCRCGNIGCLEAVAGGAALARRATAWAREGRSGYLQQRLTEGGDLTAATI 300 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 A GD+ E++ R +G ++A +N FNP ++I G + +A L +I + Sbjct: 301 AAGAAAGDTGCVELLAAAARQIGDSLATFVNFFNPSIVIIGGGVAQAGNAFLASIRQRVY 360 Query: 361 TQALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAMLN 396 +++L +L +V S L D IGA +V +L+ Sbjct: 361 SRSLPLATRDLQIVLSSLGDIGGLIGAAHMVVDEILS 397 >UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetales RepID=Q0SE61_RHOSR Length = 400 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/350 (27%), Positives = 159/350 (45%), Gaps = 23/350 (6%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 V+ LI +R +I + L+ +V L GL+ E ++ STGGR + + Sbjct: 19 VFALIRAGQATTRTEIGTLTGLSRTAVAARVSSLQASGLVVEREEGVSTGGRPPVKLSFH 78 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQR 142 + + +GR + + DL+ V+ E E+ T L+ IAQ + + + Sbjct: 79 VQAGVVLSAAIGRSRTQLAICDLAGDVIVAEDV---EQEIGTSPAELMPVIAQRLIALRE 135 Query: 143 KLREL----IAISVILPGLVDPDSGKIHYMPHIQVENWG---LVEALEERFKVTCFVGHD 195 L E + I + LPG VD + G P + W L L + FV +D Sbjct: 136 SLGETAGRTVGIGISLPGTVDTERGCSLNSPMMS--GWDGVPLQPFLADVTDAPVFVDND 193 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL-G 254 + LAE G +D D +L++ G GAG++S G + G G GEIGH + G Sbjct: 194 ANVMVLAERR-GERRDFADMLLIKASTGLGAGLVSGGVLQRGALGAAGEIGHTKTAAAQG 252 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CG+ GC+E +A A+ V NL +QG + I+ + A GD+ A + Sbjct: 253 VVCRCGDVGCIEAVAGGWAL---VRNLQEQGREV------THIRDVITLALAGDAEARRM 303 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 I GR +G+ ++ AINL NP+ +++ G++ +A + + + A+ Sbjct: 304 IRESGRQIGEVLSGAINLLNPEVVIVGGDMAQAYDTFVAGLRETLYGNAI 353 >UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WTI5_RENSM Length = 403 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 163/348 (46%), Gaps = 42/348 (12%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA--I 77 S+A+ LI SR +A + LAP+++T+ +LIE GLI E TGGRR + Sbjct: 29 SSAILSLIASNPASSRADLARKLNLAPSTITQRINELIEAGLIAESGAGGHTGGRRPTLL 88 Query: 78 SIVTE-----TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 S+V + + A +GR + + L D S +++ + PE + A+ + Sbjct: 89 SLVADAGCILAADLGAAHAWVGRLNMSCALLD--SSLISIDISAGPEAVLPIISEAMRS- 145 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ------VENWGLVEALEERF 186 I+ LR + + LPG VD G + ++ V +W L F Sbjct: 146 ---LIEDDTPPLR---GVGLALPGPVDFTRGMVDSPSRMRGWHQYPVRDW-----LSREF 194 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCE-----DSILVRVHRGTGAGIISNGRIFIGRNGN 241 V +D +AL E+ Q+ + D++ ++ G G+I G+++ G +G Sbjct: 195 DTAASVDNDANMMALGEYSLRQRQNPDTKNRTDTLFLKAGAAIGCGLILQGQLYRGASGT 254 Query: 242 VGEIGHIQVEPLGE-RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 G+I H+QV GE C CG+ GCLET+A+ AI V L++ G + + + + Sbjct: 255 SGDIAHVQVSAAGELPCACGHRGCLETVASGTAI---VSQLIEAGVEVK------DLADV 305 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEAD 348 + A GD+ + + GR LG+T++ +N NP +V+ G +++ + Sbjct: 306 IRFALNGDTQTTTRLRAAGRLLGQTLSTVVNFINPSLVVLGGGLSQVE 353 >UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF86_9FIRM Length = 381 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/340 (26%), Positives = 163/340 (47%), Gaps = 18/340 (5%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 GN +L++ +N+ +V R I +G ISR IA + L A+V+ I + L++RG+I E + Sbjct: 4 GNQELIRDINTQSVLRTIITHGAISRASIASELGLTKATVSAIVQVLLDRGIIFEAESSD 63 Query: 70 ST----GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 + GR+ I + + + + L + T+ +L +P PE+T+ L Sbjct: 64 TAPEGRKGRKPIFLQLNKDCGYVVAIDLATENITLMTANLLGGNCRLTQFPTPEKTELLL 123 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 L I + I++ + L+ I++ + G+V + KI ++P+ + V L + Sbjct: 124 P-LLKERIDRAINALPKTRYGLLGIALGIHGVVHHN--KIIFLPYSSFGDIDFVSRLGDI 180 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + V + ++ AL E + D + + + VH G GAGII ++ G+NG GE Sbjct: 181 YGVPVVMENEANLSALGE--WAHCHDTNEMLYISVHSGIGAGIIMKNQLVKGKNGYAGEF 238 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH +E G C CGN GCLE A+ A+ + ++GY P++ + + Sbjct: 239 GHTIIEVDGRPCPCGNHGCLEQYASERALFAEL--SAQKGY----PVN---AEVYGRLYR 289 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT 345 +GD A ++ +++ I +N FNP IV+ +T Sbjct: 290 QGDPAAVRAMQQFIKYMSVGINNLLNTFNPDIIVLNSSLT 329 >UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN99_9FIRM Length = 450 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 186/404 (46%), Gaps = 25/404 (6%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ--Q 68 N++ VK N +A+ +L++ +G +SR IA + L PA+VT I QL+ G++ E + + Sbjct: 56 NLENVKVSNRSAILKLLNDHGAMSRKDIALELGLTPATVTLICTQLLSAGILVEKGEMEE 115 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 GR+ +SI + + + V + + I++ DL +++A +T LE Sbjct: 116 EKRAGRKKVSIDINYQYKYVLSVSIEAPETCISISDLKGRLIAGRKL----KTDGALEPQ 171 Query: 129 LLNAIAQFIDSYQRKLRE-------LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 + + Q D + + E ++ + LPG V D+G + I E + E Sbjct: 172 VF--LKQVADEGKSLMWEQGISKESVLGAGISLPGPVKRDTGVSLHAYRIWNEAVPVGEY 229 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 ++ + V +++++ A E +G ++ E+ + ++ G G+ II +I+ +N Sbjct: 230 MKMYLDLPVVVENNVKAFAEGELIYGTGKNQENLLFIKWGPGVGSAIIIQNKIYDSQNSK 289 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQ----GYQSRVPLD--DC 295 EIGH VEP G C CG GCLET A A+ +RV + G + V D Sbjct: 290 TAEIGHYIVEPGGLPCRCGRRGCLETHVATHAMAERVRRACTKESMPGLYAFVDGDVEKI 349 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 ++ + + D ++I+ + L +T+ I L P K++I G + E D + + Sbjct: 350 EVRNMEQWIEIEDPGLQKIIDDIVERLARTVVNTITLLAPDKVIIYGFMFEMDHIQKRFL 409 Query: 356 ESCINTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNGI 398 + C +L +++S L R IG A+V M G+ Sbjct: 410 DFCTYYDSLYDGDY---ILKSGLSDRIGYIGPLAIVVNEMFLGM 450 >UniRef50_B3YF83 Putative ROK family protein n=2 Tax=Salmonella enterica subsp. enterica serovar Kentucky RepID=B3YF83_SALET Length = 390 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/381 (24%), Positives = 180/381 (47%), Gaps = 33/381 (8%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N + K+ + + V L+ GP S+ I+ ++ L+PA V + ++L E G VD Sbjct: 3 NNSIKKRKSVSLVRELLLNEGPHSQASISRKTGLSPAMVNYVVKKLRELG---NVDIHWV 59 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 G +S++++T + +I V + + ++ F+ S + E + ++ HA++ Sbjct: 60 NGREGIVSLISKTGRYISILVAVDKISCSLFSFE-SEQRFDYECFVDQNSPEENNPHAVV 118 Query: 131 NAIAQFIDSYQRKLREL--IAISVILP------GLVDPDSGKIHYMPHIQVENWGLVEAL 182 I + +++ + ++ +AIS++ P ++ +G++ I+++++ Sbjct: 119 QIINDLLKNHELSIGDISGVAISIVAPLDINGETIISWSAGRLPGWCDIKIKSF-----F 173 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E ++ +G+D ALAE +G+ + E+ I + R G GII N I+ G NG Sbjct: 174 ERELQLPIIIGNDANHSALAEWSWGSGKGVENFIYISCSRQIGGGIIINNHIYKGGNGMA 233 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 E GH+ ++ G C CG GCL T + AI ++ L S+ + ++ I Sbjct: 234 AEFGHLIIDNSGAVCFCGCRGCLTTFISERAI---IMTL------SKSEIYKNSLTEIIL 284 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA +GD V+ GRHLGK +A + + P I I G++++A + ++ S I Q Sbjct: 285 AAAEGDVACQRVLFDAGRHLGKALANIVKILAPDVISIGGDLSKAGAIFFDSVISTIEEQ 344 Query: 363 ALKAFRTNLPVVRSELDHRSA 383 NL +D +SA Sbjct: 345 -------NLGTTSPTVDLKSA 358 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 163/353 (46%), Gaps = 10/353 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ +K++N + + + I + G +SR +++ + L A+V+ L++ L+ E + + Sbjct: 4 GDASYIKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEIEY 63 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 + GR+ I + +AIG+ L + + DL ++ + L + L Sbjct: 64 NQVGRKPIMLSINAEAGYAIGIDLEYDQISFAISDLKGSLVLTDTIKLQSHAYADILSLL 123 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 I + + + +I I + + GLV D IHY+P + L LE + Sbjct: 124 TGQIKHYQERFAASRYGIIGIVIAIHGLVSTDE-VIHYIPSFGWHDVPLKSDLENALGLQ 182 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 + ++ A AE F + +D I V ++ G G G++ N F G++G GEIGH+ Sbjct: 183 VKLENNANLSAFAERVF-FHHETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGEIGHMI 241 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 V P G C+CGN GC E A+ E V LL+ ++ P D T I + Sbjct: 242 VVPGGLPCNCGNKGCWEKYAS----ETSVFQLLR----AKKPDADITYAQIGNWIEAKEP 293 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A+E+IE +L + IN++NP+ +V+ E+ L IES +N++ Sbjct: 294 DATELIEQFIYYLSIGLNNIINIYNPEVVVLDSELLRIYPDSLQHIESNLNSR 346 >UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LTZ1_ACIC1 Length = 436 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 159/356 (44%), Gaps = 18/356 (5%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE-VDQQAST 71 D+++Q N + + R + G +SR + L +++ + +L L+ E + A Sbjct: 8 DVIRQRNLSVLLRRLHVDGALSRADLTAAMGLNRSTIKALVEELAAMNLVTETIPGTAQR 67 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEHAL 129 GR + + + + +G T+ F L +LA YPL P + + L Sbjct: 68 AGRPSHVVAVRCDTAYVLAANVGVDTVTVAAFGLGGHILARRDYPLGGPGASADAVIARL 127 Query: 130 LNAIAQFIDSYQRKL-RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 A + +R R L+ I V +PG+V + G++ + P++ N L V Sbjct: 128 AAECAAIRSALERSPDRRLVGIGVAIPGMVHAEDGRVEFAPNLMWRNVPFAAPLSAALDV 187 Query: 189 TC--FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 +G+D ALAE GA + + + G G GII +GR+ +GR+G GEIG Sbjct: 188 DVPIRIGNDGDLGALAEQVRGAGRGVAHLVYIAGEVGIGGGIIVDGRLVLGRHGFAGEIG 247 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ V P G C CG GCLET AI + G Q+ + +AA + Sbjct: 248 HVMVHPDGRPCRCGGRGCLETEVGEEAILTACGRDPRAGRQA--------THEVFEAARR 299 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 GD A + + ++ LG+ + IN+F+P+ ++I G ++ LLP E I + Sbjct: 300 GDRRAQDGLRHIAVWLGRGLGSIINVFDPEVVIIGGPLSS----LLPLAEPVIREE 351 >UniRef50_C3RN66 ROK family protein (Fragment) n=2 Tax=Bacteria RepID=C3RN66_9MOLU Length = 298 Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 18/264 (6%) Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV---EALEERFKVTCFVGHDIRSLA 200 ++ A+ + +PGL++ + G + P+ NW V E E ++ + + +D+R Sbjct: 40 FEQIDALGIGVPGLLNRNDGISLFSPNFN--NWHNVKIKEWFEHKWLIPTVIDNDVRMHL 97 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCG 260 E YFGA + ++ IL+ + G G+GI+ +G + G N +VGEIGH+ + G C CG Sbjct: 98 YGELYFGAGKGFKNIILIAIGTGLGSGIVVDGHVLYGANDSVGEIGHMNMYRHGRACRCG 157 Query: 261 NFGCLETIAANAAIEQRVLNLLKQGYQSRVPL--------DDCTIKTICKAANKGDSLAS 312 + GCL + + +N K+ + + D+ T K IC+A + DS+ Sbjct: 158 SSGCLGRYVSAVGM----INTFKEKDIDHMSIVNRWVNNCDEITAKMICQAYDLNDSIVV 213 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 ++ G LG I INLFNP++I+I G ++ A + LL + AL+ N Sbjct: 214 ATLKETGEILGYGITNLINLFNPERIIIGGGVSNAGERLLASTREVAAIHALEIASNNCD 273 Query: 373 VVRSELDHRSAI-GAFALVKRAML 395 +V +EL ++ + GA KR ++ Sbjct: 274 LVVAELGEQAGMYGAAKYAKRKLI 297 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 162/367 (44%), Gaps = 13/367 (3%) Query: 31 GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIG 90 GP SR IA L+PA+VT + L+E G++ E GRR I + + A+G Sbjct: 26 GPRSRADIATVIGLSPAAVTFVVADLLEEGIVIEGKTVPGLTGRRPIPVDINYEHALAVG 85 Query: 91 VRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAI 150 +L DL++ +A L + L + + + + R +L I Sbjct: 86 FKLMVDSVECVATDLATNPVAAMRVSLGGHDPDKVADLLASTVPELVKLAGRPNAKLAGI 145 Query: 151 SVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQ 210 + +PG+++ + + +N L + R V ++ D + A+A+ FG + Sbjct: 146 GISMPGVINHEQTACVRSYRFKWDNVPLASLVASRVHVPVWLEDDTNAYAIAQQLFGLGR 205 Query: 211 DCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAA 270 + ++ V G ++ +G+++ G NG G+ GH E G C CG GCL + Sbjct: 206 QHRNMAVLAVGVGISCALVIDGKLYRGANGAAGKFGHTLYEENGRLCECGKRGCLMAYHS 265 Query: 271 NAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAI 330 ++ +R ++ ++ + + A GD+ A ++ GR +G +A + Sbjct: 266 EISMLRR--------WREATGREELGLPELSAALASGDTTALALVADSGRGIGTALANLV 317 Query: 331 NLFNPQKIVIAGE-ITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFAL 389 N+ +P+ IV GE ++ D L P E+ + + FRT P++ D+ A GA AL Sbjct: 318 NITDPEVIVAGGEAVSLGDPFLTPLREAL----SARTFRTAPPLLPDWEDNSWARGAAAL 373 Query: 390 VKRAMLN 396 V + + + Sbjct: 374 VTQKIFD 380 >UniRef50_A6CEE9 Transcriptional repressor of the xylose operon n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CEE9_9PLAN Length = 375 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 91/365 (24%), Positives = 171/365 (46%), Gaps = 19/365 (5%) Query: 18 LNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAI 77 +N V +I G ++R + S ++ +V+K L+E GL++E + + GR Sbjct: 1 MNVRKVLEVIQSQGTLTRADVMRCSGISAPTVSKAVSALLEAGLLEERETAEFSVGRPGK 60 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAE--EHYPLPERTQQTLEHALLNAIAQ 135 + + IGV L +I L + + + + P+ + +E + Sbjct: 61 LLQLPRFSAQVIGVVLEWDYCSIVASGLDGHLHEDKLDRFKTPQSYSELIEII----SGK 116 Query: 136 FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE--ERFKVTCFVG 193 ++ +++ + + + +PGLV+ + G+I ++ + + G A++ R + C + Sbjct: 117 ILNLVEKEEIPALGVGITVPGLVNSNDGRIFLASNLHIVD-GQAPAVDIASRTDLECVLV 175 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 SL L+E +GA Q ED I + V G G G+ + G++ G++G GEI HI VEP Sbjct: 176 QKSTSLCLSEKTYGAGQSVEDFINLDVTSGFGMGVFTGGQLLDGQHGLAGEIAHITVEPE 235 Query: 254 GER-CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G R C CGN GCLET+A + A+ V N L + + + I + +G+ + Sbjct: 236 GGRMCGCGNLGCLETVATDLALTHYVSNRLGK---------ELEFEAIAELVKQGELDIT 286 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 +++ L +A AIN+FNP I I + + + + S ++AL+ ++ Sbjct: 287 PELDHTIEFLAIGVAAAINIFNPSNIFITARLFDLRDDVFDKMCSIAKSRALQPSASSCE 346 Query: 373 VVRSE 377 + RS+ Sbjct: 347 IERSK 351 >UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3C7_9BACT Length = 322 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/294 (26%), Positives = 151/294 (51%), Gaps = 11/294 (3%) Query: 93 LGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISV 152 +GR + F + + AE Q + H + IA I + + + +++ I + Sbjct: 23 VGRDGNILYQFSIKTNAHAE---------SQVISHQICELIAGIIKNVRIEKSDILGIGL 73 Query: 153 ILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQD 211 PGL+D I + P++ + + + + + + F + C + +D + A E + GA +D Sbjct: 74 GSPGLIDKKGETILFSPNLSKWRDIPIKKIISDTFGLPCILENDANAAAWGEKWVGAGKD 133 Query: 212 CEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAAN 271 +++ + G G GII + +++ G N GEIGH+ ++ G C+CGN+GC+E A+ Sbjct: 134 VSSLVMLTLGTGIGGGIILDNKLWRGINNTAGEIGHMSIQTDGPLCNCGNYGCIEVYASA 193 Query: 272 AAIEQRVLNLLKQGYQSRVPLD-DCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAI 330 + +R LL+ G S + D + T K I +AA +GD + +IE GR+LG I I Sbjct: 194 PGMVRRFRELLESGKASLLKKDEEITAKRINEAAVQGDGASLSIIEETGRYLGIAIVNII 253 Query: 331 NLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI 384 ++ NP +V++G + + ++L+ ++ I + LKA + ++ S+L + I Sbjct: 254 HILNPGAVVLSGGLIGSGELLMRPVKRTIEERVLKASYKDTKILFSQLGTDAGI 307 >UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G397_GEOUR Length = 328 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 147/307 (47%), Gaps = 7/307 (2%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYP--LPERTQQTLEHALLNAIAQFIDSYQRKLRE 146 IG+ +G + L D KVL E + + +Q L+ + IA +E Sbjct: 11 IGIDVGGTNLRFALVDELGKVLFRERRSTEIHQGKEQFLKR-FFSVIASLRTWADSSGKE 69 Query: 147 LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYF 206 ++AI +PGL+ D + + +E L E + + V +D + A E + Sbjct: 70 IVAIGAGVPGLISNDGIIYSSVNLLPLEGLNLRELITAAAGLPAIVVNDANASAWGEKCY 129 Query: 207 GASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLE 266 GA + +++ + G G+G++ N +++ G +G GE GH+ VEP G+ C CGN GCLE Sbjct: 130 GAGRSMNSFLMLTLGTGVGSGLVLNDKLWTGCDGVAGEFGHVTVEPDGKPCPCGNHGCLE 189 Query: 267 TIAANAAIEQRVLNLLKQGYQ---SRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLG 323 A+ A+ ++ G + VP + + AA+ GD+LA + E GR+LG Sbjct: 190 QYASATALVAEAGEAIQAGGGGALANVPASMLNAEVLADAAHGGDALAKAIFENAGRYLG 249 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA 383 A A+NL N + I++ G + + +++ + I +A + +VR+EL+ + Sbjct: 250 IASAAAVNLLNLEGIILGGGVAASYDLIVEPMRREILARAFAIPARRVRLVRAELEDDAG 309 Query: 384 I-GAFAL 389 I GA A+ Sbjct: 310 ILGAAAM 316 >UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8E8_9ENTR Length = 377 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 165/360 (45%), Gaps = 10/360 (2%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 + RL+ +SR IA++ +L+ A+++ + ++++ GL++E +A+ GR ++ + Sbjct: 9 IIRLLIASHGMSRTAIAQKMKLSKAAISTLIKEMLNAGLVEESIPEATGQGRPSVLLKMR 68 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQR 142 + + +G L T+ L D+ + LA PL Q L A+ +AI + Sbjct: 69 ADSAYFLGASLLGEAITLVLIDMHGRTLATRVLPLNLDPHQ-LTRAIADAIPSLVTQQGI 127 Query: 143 KLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALA 202 +LI + V L G VD + ++ L + L+ + + + +D ++LA++ Sbjct: 128 SPDQLIGLGVTLSGFVDEHQAVCVQSALLGWKDVPLADMLKAQTGLEVSLENDAKALAVS 187 Query: 203 EHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNF 262 E FG ++ + L+ G G+ G++ G +G GEI H +EP G C CG Sbjct: 188 EKIFGLAKKVRNFTLISHSDGIGSAHFFQGQLHRGAHGGAGEIAHCTIEPGGRPCRCGKR 247 Query: 263 GCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHL 322 GCL+T+A+ AI + + + + T+ + A KG S A ++ G L Sbjct: 248 GCLDTLASLTAIREHMRD---------KAIAAQTLPELETQAIKGSSAAIAILHQAGNAL 298 Query: 323 GKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS 382 G IA + + +P+ IVIA D +L + I+ L + P+ L+ S Sbjct: 299 GLAIANIVQMNDPELIVIAHHPGAFDGLLKTVVMQAIDANVLPSIMGKTPISTIVLNDES 358 >UniRef50_A5UW86 Glucokinase n=2 Tax=Roseiflexus RepID=A5UW86_ROSS1 Length = 340 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT---C 190 AQ L + AI + +PG++D + G +P++ W V +T Sbjct: 63 AQVCTQANVALEHIPAIGIGVPGVIDLERGVTVLLPNLP-SGWRNVPLAANITHLTGRPT 121 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 + +D R+ LAE FGA +D + + + G G GI NGR+ +G +G GE+GH+ + Sbjct: 122 AIINDARAFTLAEATFGAGRDASSVVGITLGTGIGGGIAFNGRLHLGIDGTAGEVGHMTI 181 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAA 304 +P G RC CGN GCLET A+ +I L + QG +++ L+ T I +AA Sbjct: 182 DPYGPRCGCGNRGCLETFASGPSITAMGLRAVAQGMTTQIGALVDYDLNKITPGVIARAA 241 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLL 352 GD++A E+++ G +LG IA I +F+P+++VI G ++ + LL Sbjct: 242 ENGDTVAREILQRAGSYLGIGIANLITIFSPERVVIGGGLSRLGEWLL 289 >UniRef50_B2GIX7 Putative NagC family transcriptional regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GIX7_KOCRD Length = 421 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 115/402 (28%), Positives = 189/402 (47%), Gaps = 39/402 (9%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 PG QA + + N V + G +++ +IA ++ LAP++V+ I ++L L Sbjct: 41 APGSQAAL------RLANRRRVVDAVRGLGAVTQARIARETALAPSTVSSIVKELTACDL 94 Query: 62 IK-EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 + E D GGRR + H +GV +G + L DL+ ++LA+ L R Sbjct: 95 LTVEPDH----GGRRGQRVRFSASAGHLLGVDVGHRHVAVALADLNLEILAQRRAELSPR 150 Query: 121 --TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP-----DSGKIHYMPHIQV 173 ++ L+ A A + D ++ + LP VD DS I +PH Sbjct: 151 HGAREVLDVARGMA-DELRDELGIPAERVLRAGIGLPAPVDAQGRGLDSAVI--LPH--- 204 Query: 174 ENWGLVEALEERFKV---TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIIS 230 W ++ E V V +D + A++EH GA + D ++V G GAG++ Sbjct: 205 --WSGLDVRELAAHVLGCPVVVENDANAGAVSEHALGAGRGARDMAYLKVSHGVGAGLVL 262 Query: 231 NGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV 290 G ++ G G GEIGHI ++ C CGN GCLET ++AA VL L++ Q Sbjct: 263 GGTLYRGATGAAGEIGHITLDERAGLCRCGNRGCLETFVSSAA----VLELVRPSGQ--- 315 Query: 291 PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKV 350 P++ ++ + AA GD S V+ GR +G +A NL NP+ +V+ G++ A ++ Sbjct: 316 PVE--SVSDVVDAALAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPELVVLGGDLARAGEL 373 Query: 351 LLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR 392 LL + + ++ L + + VV SEL R+ + L+ R Sbjct: 374 LLEPLRTAVDRYTLHGS-SPVRVVPSELGPRAHLTGALLLAR 414 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 84/339 (24%), Positives = 163/339 (48%), Gaps = 10/339 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE---VDQ 67 + + ++ N + + +GPI+R+ + + +L+PA+VT IT +L + + E + Sbjct: 5 DTEQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEHPATTE 64 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 + +T GR + I FH +G++L ++ + L + +V E L R E Sbjct: 65 KTNTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTRALS--EE 122 Query: 128 ALLNAIAQFIDSYQRKL---RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L +AIA + + + + A+ + + G+V+ +G+I + P + V L LE+ Sbjct: 123 GLFDAIASAVRRFNASVPAHKRPKALGIAVQGVVNGLNGEIIWSPALAVRKVPLKHELEQ 182 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 R ++ + +D L +A + Q D ++ + G G G++ NG +++G +G E Sbjct: 183 RIQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGAAAE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIKTICKA 303 GH + P G +C CG GC+E + A+ + L + + + P +D + KA Sbjct: 243 FGHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALFPLSWDNSLHPTEDSMQVLVNKA 302 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG 342 + L ++ + GR LG I+ I L + +KI+I+G Sbjct: 303 ESDSKEL-RDLFQRAGRVLGHGISNLIALLSLEKIIISG 340 >UniRef50_C5ESA4 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESA4_9FIRM Length = 314 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/299 (27%), Positives = 152/299 (50%), Gaps = 20/299 (6%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQ--RKLRE 146 GV +G + F + +L E + P + ++ +A+ I Y + +RE Sbjct: 5 FGVDIGGTEIKFGAFSEAGDLL--EKWSAPTDISD-MGRKIIPDVARHIRQYTVGKGVRE 61 Query: 147 --LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF-KVTCFVGHDIRSLALAE 203 + I + +PG VD +G + +++ + VE L++ F V G+D + AL E Sbjct: 62 DGVAGIGMGIPGPVDK-AGYVRTCVNLRWNGFNPVEELKKEFPDVKIAAGNDANTAALGE 120 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE-PLGERCHCGNF 262 +Y GA ++ + +L+ + G G GII NG++ +G +G GEIGH+ P E+C CGN Sbjct: 121 YYRGAGKNYDSMMLITLGTGVGGGIIMNGKVLLGAHGLAGEIGHVSAAVPEKEQCSCGNT 180 Query: 263 GCLETIAANAAIEQRVLNLLKQGYQSRV--PLDDCTIKTICKAANKGDSLASEVIEYVGR 320 GC++ A+ I + + LLK+ Q + + + K +C+AA +GD+LA I+ Sbjct: 181 GCIDQFASATGIVRIMKRLLKERKQDSILRKQEKISAKDVCEAACQGDALAVRCIDICMG 240 Query: 321 HLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 LG +A + F+P+ VI G ++ A ++++ A++ KA+R + +++ D Sbjct: 241 ALGNGLAYFSHAFDPEVYVIGGGVSGAGEIIISAVK--------KAYREKMFLIQDGAD 291 >UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDD5_THET1 Length = 321 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 154/312 (49%), Gaps = 10/312 (3%) Query: 85 NFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKL 144 N + IGV LG L + + L + P + L + +L I + + S Sbjct: 3 NRYVIGVDLGGSRVRAVLANEKGEFL--DRCEFPTLADKGL-YFVLERILECVRSVSSNA 59 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAE 203 + AI V PG ++ G + P++ N L + +EE+ + F+G+D AL E Sbjct: 60 PRIDAIGVGAPGPINSKEGVVSNPPNLPGWVNVPLAKLIEEKTGIPTFLGNDANLAALGE 119 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFG 263 +G+ + + I + V G G GII +G++ G NG GE+GH+ V+P G +C CG +G Sbjct: 120 FTYGSGKYVQHLIYITVSTGVGGGIIIDGQLLEGHNGAAGEVGHMVVQPGGPKCSCGGYG 179 Query: 264 CLETIAANAAIEQRV-----LNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYV 318 LE +++ AI +R LN + +D K + +AA KGD LA +++E Sbjct: 180 HLEALSSGTAIAKRAREAASLNKDTIMIELAGSVDKINAKIVDEAAKKGDPLALKLLEQA 239 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 G+ LG + I++FNPQ I I G ++EA ++LL + + F+ +L +V++ L Sbjct: 240 GQWLGYALINLIHIFNPQMISIGGGVSEAGELLLGPARKVVFEGLMPVFKQDLQIVKASL 299 Query: 379 DHRSAI-GAFAL 389 + GA AL Sbjct: 300 GGDVGLAGAVAL 311 >UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X1U5_OCHA4 Length = 417 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 17/340 (5%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N + ++ N V ++ ++GP+ R+ IA + L ++ I +L+ L+ ++ + Sbjct: 32 NPERIRDHNRRVVLDVVRRHGPLGRMHIARLTHLTAQAIANIVDELVSENLLMQLGRLKK 91 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 G+ I IGV +G T+ DLS K + P+ + + + L L Sbjct: 92 GRGQPPIQFAVNPEGAMTIGVEMGSTHMVTTVLDLSGKPRTQHVRPIQDVSPERLSTQLR 151 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA---LEERFK 187 + S+ +L + I V++PG D + + + + W ++A L E Sbjct: 152 KEVDAVKTSFPARL---LGIGVVMPGPFDIEG--MSSVGPTTLPGWSGIDAAAVLSEACG 206 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + V +D + A+ E FGA + ++ G G G+I +G F G GN GEIGH Sbjct: 207 ESVLVENDANAAAVGERLFGAGHAISNFAMIYFGAGIGLGMIQDGAPFRGAFGNAGEIGH 266 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 I + P G C CG GCLET A+ L+ L++ + ++D + K Sbjct: 267 IVITPNGRSCACGQKGCLETYAS--------LHTLREKLHA-AGIEDTDFDALEKLHGNR 317 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 + + ++ HL IA+ N+ +P+ I++ G + +A Sbjct: 318 NPVLMGWVQEAADHLAPMIAMIENILDPETIILGGMLPDA 357 >UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATI4_STRRD Length = 457 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 114/387 (29%), Positives = 170/387 (43%), Gaps = 42/387 (10%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 GG AQ +++ N + V R + +G SR IAE + L A+V+ + +L+ER L++ Sbjct: 12 GGAAQPAGHASLRRTNLSLVLRHLRDHGSSSRADIAEATGLHRATVSNLMAELLERRLVR 71 Query: 64 EVD-QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 EV + A T GR ++ + + +G+ + + DL +VL E Sbjct: 72 EVGIEHAGTVGRPRRAVALDGAHVGVLGLEINVDYVAVHGTDLGGRVLVERRVGFDAMGS 131 Query: 123 QTLEHAL--LNAIA-QFIDSYQRK-------------------------LRELIAISVIL 154 T H+L L +A Q ID R + I V + Sbjct: 132 GT-NHSLRELGRVARQAIDELTRAGAGPSGLGPGDLAAAGASGIAAAGGGIRVAGIGVAV 190 Query: 155 PGLVDPDSGKIHYMPHIQVENWGLVEAL-----EERFKVTCFVGHDIRSLALAEHYFGAS 209 PGLVD G + P++ + L L + R VT V +D ALAE+ G + Sbjct: 191 PGLVDVGHGVVALAPNLGWRDVSLASRLSVALGDVRAPVT--VDNDANLAALAEYTSGVA 248 Query: 210 QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIA 269 D + + G G GII GR+ G +G GE+GH+ V+P G RC CG GC ET Sbjct: 249 AGTADMVYLTGEVGVGGGIIVGGRLLRGADGFSGEVGHMPVDPGGSRCGCGRSGCWETKV 308 Query: 270 ANAAIEQRVLNLLKQGY---QSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTI 326 AA+ + + Q Y + VP + + I + GD L + VGR LG Sbjct: 309 GLAALVR--MATPDQAYGMGTTPVPDPEERVAEIARGLAGGDPLMLAAVAEVGRWLGLGG 366 Query: 327 AIAINLFNPQKIVIAGEITEADKVLLP 353 +I +NLFNP+ IV+ G + LLP Sbjct: 367 SILVNLFNPRVIVVGGYFATLARWLLP 393 >UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA6_9BACI Length = 387 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 162/352 (46%), Gaps = 12/352 (3%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 VKQ N + + + Q PISR +A+ L A+V+ + +L++ +++V S+GGR Sbjct: 8 VKQQNKKLILKTVYQLEPISRADLAKVLSLTKATVSNLVDELVQEHYLEQVGLGKSSGGR 67 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 R + + + + I V +G + L DL ++ + + + + Sbjct: 68 RPLMLKINEKAGYTISVDIGVNYIRSILTDLKGGIMKKAVETTDTNVYEDTMRYIETMVN 127 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 I+ L+ I +PGLVD D G + P++ + + + E F V V + Sbjct: 128 NLINDMDDAPFGLVGIGFGVPGLVDSD-GTVISTPNLDWQESDIRKRFEAAFDVHVIVEN 186 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 + + A E FG + I + G G G+I +G ++ GRNG GE+GH ++ G Sbjct: 187 EANAGAFGEKSFGEGISSDHFIYISGGIGIGVGLIFDGVLYRGRNGFTGELGHTIIQMDG 246 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR-VPLDDCTI-KTICKAANKGDSLAS 312 C CG GC E A+ L +LK+ + + +P T+ + + +AA D A Sbjct: 247 LTCSCGKKGCWERYASE-------LYILKEYEKLKGMPWHQLTLEEAVTEAAADEDVRA- 298 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 + RH + IN FNP+KI++ +T+A++ +LP IE I A+ Sbjct: 299 -IFHRAARHFAIGLTNIINSFNPEKIIVGNRLTQAEQYMLPVIEEVIAETAI 349 >UniRef50_D1BZ00 ROK family protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZ00_XYLCX Length = 383 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 102/388 (26%), Positives = 172/388 (44%), Gaps = 48/388 (12%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG-GRRAI 77 N A V + + GP SR +A + L +V+ + L+ GL++E+ Q G G+ AI Sbjct: 32 NRAMVLQHLFHEGPTSRADLARATSLTRVTVSDLINVLMAEGLVEELGVQRGRGVGKPAI 91 Query: 78 SIVTETRNFHAIGVRLGRHDATI---TLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 + T F + V L D T+ + L+ + + + +RT L Sbjct: 92 LVGMRTDAFQIVAVDL--SDDTVMRGAVLTLTGEAVVRRSLAVDDRTGDEL--------V 141 Query: 135 QFIDSYQRKL-----RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 I+ + R+L + +I + + PG++D SG++H P+ + + L L +R + Sbjct: 142 ALIERFARRLVAAATQPVIGVGIGAPGVID-GSGRVHEAPNRKWVDLPLAAILSDRLGLP 200 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D AL E+ +G + D ++V V +G GAG++ +G G N GE+GH+ Sbjct: 201 VQVANDADVAALGEYTYGGASDS--LLVVTVGQGVGAGLVVDGSRVYGTNSAAGELGHVT 258 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 V GE C CG GCLET+ + + + V NL D+ T+ Sbjct: 259 VVDDGEECACGRRGCLETLLSAPNLRRAVENL---------DADEATM------------ 297 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 V+ VGR LG T+A ++ N ++++ G D L A + + + + A Sbjct: 298 ----VLARVGRILGTTLAPVVSALNLGEVLLCGPADLLDGALREAAHATVVERTMPAVSA 353 Query: 370 NLPVVRSELDHRSAI-GAFALVKRAMLN 396 L + + LD + GA LV A L Sbjct: 354 GLRLRMATLDDDVVLAGAAVLVLGAQLG 381 >UniRef50_C1CMC6 ROK family protein, putative n=18 Tax=Streptococcus pneumoniae RepID=C1CMC6_STRZP Length = 392 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 175/385 (45%), Gaps = 18/385 (4%) Query: 16 KQLN-SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV--DQQASTG 72 KQL A + + GPISRI+IA ++ + PA+ + IT LI+ ++ E+ D+ ++ Sbjct: 6 KQLQLRAKILETVYTLGPISRIEIATKTGITPATTSSITNDLIKENILLELGEDEHDTSV 65 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN- 131 GR+ I + + + F+ IG L T L D +L EE + ++ Q + L+N Sbjct: 66 GRKKILLDIQAKRFYYIGCELSEKHFTFALGDNLGNILKEEKEIVTKQLIQEKGNQLINQ 125 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + QF+++ E+ AI + LPG D P Q + +E ++ F F Sbjct: 126 TLKQFLNNCSD--YEIEAIGIALPGRYLDDYKITTNNPLWQHID---LEMIQSHFDKPLF 180 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 +++ +A+ + F Q+ + RG I +G I+ N +GEIGH V Sbjct: 181 FSNNVNCMAIGKRLFSRQQNDPNFAYFHFARGMHCSYIYDGNIYGKGNLMIGEIGHTVVS 240 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTICKAANK 306 GE C CG GCL+T A + + ++ L Q S +P DD I+ I A Sbjct: 241 SEGEECSCGRKGCLQTFAGESWLIKKSKILYHQSPYSLLPSLVKNADDIDIQVILTAYQL 300 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 GD+ +I +L +TI + + QKI + + ++ ++ + S +N + K Sbjct: 301 GDTGIITLIHQALLYLSQTILNISMMIDSQKIYLHSPLL-TNQHIIQKLYSEMNYKP-KL 358 Query: 367 FRTNLP--VVRSELDHRSAIGAFAL 389 LP ++ D +A A AL Sbjct: 359 LYNRLPEVIIEPYNDFTAAHSAIAL 383 >UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3V9_9CLOT Length = 386 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 162/352 (46%), Gaps = 31/352 (8%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M GG + +++L++++N + + ++ + P+SR Q+A L+ +V+ I +L+ + Sbjct: 6 MAKGGNPR--HLELIRRINRSLILNMVKERQPVSRAQLARALNLSKTTVSSIVDELVRKK 63 Query: 61 LIKEVDQQASTGG--RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP 118 L+ E +GG R ++ + R+ + IG+ + + + + DL+ + L E P Sbjct: 64 LLVEYGDCCPSGGAGRPSVMLGFNPRSAYCIGIDIASANLRLIITDLAGEALYETKRPPS 123 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL 178 R + L+ + + + K+ + + + +PG+V + G + + N+ L Sbjct: 124 SRMGE-----LIGVVEEAVRDCGLKMEAVFGMGIGVPGIVTAE-GSVVRAKFLGWSNFPL 177 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 +EE F FV + + AL E + G+ +D + VR+ G G +I G++ G Sbjct: 178 KRLMEEHFPFPVFVENGVNLAALGERWLGSGDQVDDMLFVRIGTGIGGAVICGGQLIHGA 237 Query: 239 NGNVGEIGHI----QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 GN GEIG+ VE LG G G LE + AA L G + Sbjct: 238 GGNAGEIGYFLESRDVE-LGNVNQPGQQGVLERKCSGAA-------LTGHGRPT------ 283 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE 346 + + A +GD A+ V+E R L IA ++L P K VI G+++E Sbjct: 284 ---EELFAAYGQGDREAARVVEPFIRDLSVAIANCVSLLGPAKAVIGGDVSE 332 >UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XND9_MEIRU Length = 397 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 101/392 (25%), Positives = 177/392 (45%), Gaps = 35/392 (8%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +K+LN + + ++GP SR +A L ++V+ + ++++E GL+ E + GR Sbjct: 12 IKRLNRRLILEALRRHGPQSRAALARAVGLTKSTVSTLVQEMLEEGLLDEGSRHKPGLGR 71 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKV------LAEEHYPLPERTQQTLEHA 128 ++ R+ A+GV LG + + L DL++ + + H PL ER Sbjct: 72 PGTALEFSPRHTLALGVELGVENTQLVLLDLNNTIHDKWDWVESPHTPLAER-------- 123 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L +A+ + S L+ I + +PG+V + ++ Y P N E LE KV Sbjct: 124 -LTKLAEQVQSRLSDPTRLLGIGLAVPGVV--NGRRLLYAPGPGWHNEQPAEMLEALLKV 180 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V +D + AL E ++G Q + V + G G G++ +G+++ GR G GE+GH Sbjct: 181 PTLVDNDANAAALGETFWGEQQS--PLVYVLMTTGLGTGLVVDGQVYRGRLGAAGELGHW 238 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQ-RVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 R G+ T++ A +E+ + + K+G+ I + A Sbjct: 239 LTGQPHSRSRAGDVEG--TLSLRAMVERYQAASNRKEGFWG-----------ILQRAEHQ 285 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D A + ++ + LG+ + F+P +V+ G EA K L + I+ A Sbjct: 286 DPYALQALQNLAYELGRFVVNLCVAFDPAVVVLGGAGAEAWKWLEAPLRQTIHNLAFIPE 345 Query: 368 RTNLPVVRSELDHRS-AIGAFALV-KRAMLNG 397 +PV S H + A+GA ALV +R + NG Sbjct: 346 HAEIPVKPSAFGHLAPAMGAAALVLQRFLANG 377 >UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=Meiothermus silvanus DSM 9946 RepID=C1XPR1_9DEIN Length = 777 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 106/417 (25%), Positives = 187/417 (44%), Gaps = 41/417 (9%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 + P ++ G+ +K++N A+ + ++R ++A + L ++++ + QL+ G Sbjct: 377 LVPMSPSRKGDPLEMKRINRRAILEALKGSRSLTRAELARRLGLTKSTISSLMDQLVSEG 436 Query: 61 LI---KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY-- 115 L+ + + S GR + + A+G LG ++ + D + +L E + Sbjct: 437 LVLSRGDTLRPKSQLGRPGVEVGLNPAGAVALGAELGVENSVVLAVDWTGTLLFREEWGA 496 Query: 116 ----PLPERTQ---QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYM 168 PL ER + Q HAL ++ E + + + LPG+VD G +HY Sbjct: 497 DPRTPLSERLERLTQVTRHAL------------QRHPEALGLGLALPGVVD-ARGWLHYA 543 Query: 169 PHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGI 228 P++ ++ + EAL+ R + +D S A E +F Q +++ G G G+ Sbjct: 544 PNLGWRDFSVAEALQARLPFPVHIENDANSSAAGEVFFTPRQGQLAYLMLGT--GLGVGL 601 Query: 229 ISNGRIFIGRNGNVGEIGH-IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ 287 + G + G NG GE+GH + P +RC CG CLET + A+ + L G + Sbjct: 602 VHAGTVLRGANGAFGEVGHWLGSSP--KRCRCGRVSCLETEVSLRAMLEHYHAL---GGK 656 Query: 288 SRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 ++ + K A G LA E + +GR LG+ IA ++P+++V+ G EA Sbjct: 657 AK------DFWEVLKQAQTGHRLAVESLAELGRALGRLIANLAVAYDPERVVLGGAGAEA 710 Query: 348 DKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML-NGILLQH 402 L + + A L V S H + A+GA ALV + L +G L +H Sbjct: 711 WDYLQQPLRQAVEEHAFLRQHQRLEVQPSLFGHLAPAMGAAALVLHSFLASGGLREH 767 >UniRef50_A4FI29 Crp-family transcriptional regulator n=4 Tax=Actinomycetales RepID=A4FI29_SACEN Length = 414 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 105/389 (26%), Positives = 179/389 (46%), Gaps = 29/389 (7%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST-- 71 LV++ + V R + + G +SR +IA+ L+ +V++ITR L+ RG I VD A+ Sbjct: 16 LVRRTHKERVLRALRERGALSRGEIAKIVGLSRTTVSEITRDLLRRGAIVVVDTDAAVRE 75 Query: 72 -GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA------EEHYPLPERTQQT 124 GR A + + R+ +GV G + + D + +++A +E PER Sbjct: 76 GSGRPAERLALDPRSAQFMGVDFGHRRVRVAVADAAHEIVASGRQRYQEDAGWPERISAA 135 Query: 125 LEHALLNAIAQFIDSYQRKLREL-IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 L++ + + L+ + I ++ P P + + + P + + Sbjct: 136 F--GLIDRLGDECGVHFHALQGIGIGVTGPYPRSSAPHAPEGAFGPGFAAARDDVDVSFA 193 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 ERF + V ++ R ALAE G +D + VR+ G G ++ GR+ G G G Sbjct: 194 ERFGASVIVDNNTRFAALAEAITGGGA-VDDLLYVRLSDGVGGALVVGGRLVGGATGLAG 252 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ--RVLNLLKQGYQSRVPLDDCTIKTIC 301 E+GH+ +EP G C CG GCLET+A+ AI RV D ++ + Sbjct: 253 ELGHVTIEPGGPLCRCGKAGCLETVASVPAIMAACRVRG-----------ADVGSLDELR 301 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 A +GD +V+ LG+ + + FNP ++VI GEI V++ + + + T Sbjct: 302 SAVERGDPAVEQVLRDAASALGRVVGMVAMAFNPAEVVIGGEIAHLAPVIVGQVTATVAT 361 Query: 362 QALKAFRTNLPVVR-SEL-DHRSAIGAFA 388 + L + P +R ++L D A+GA A Sbjct: 362 E-LFPWAAAKPAIRCAQLSDDDGALGALA 389 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/392 (25%), Positives = 181/392 (46%), Gaps = 20/392 (5%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 +++ V I G ISR+ IA+ + L A+V+ + R+L++ L+ E+ + STGG+ + Sbjct: 13 STSVVLDAIRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLVIEIGRAESTGGKPRVL 72 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFI 137 + +A+GV L T + +L+ +A P P + + + + I + Sbjct: 73 LELNPTARYAVGVHLDHGAITYAVTNLAGAPVARLARPGPGNASPADVVIRMADEINMLV 132 Query: 138 DSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI--QVENWGLVEALEERFKVTCFVGHD 195 +S +L+ + ++ PG + +G +H P E++ L L + ++ + +D Sbjct: 133 ESIGIARDKLLGLGLVSPGPLSSRAG-MHLTPPFMRSWEDFPLDTQLADVAQLPVLLEND 191 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 + A+ E++ G +Q E + + G GAGI+ NG + G +GN GEIGH G Sbjct: 192 ATAAAIGEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTSGNAGEIGHTCANIDGP 251 Query: 256 RCHCGNFGCLETIAANAAI------EQRVLNLLK-QGYQSRVPLDDCTIKTICKAANKGD 308 C CG GC E +A AA+ + R++ P+ I +A+ GD Sbjct: 252 ECWCGARGCFEALAGPAAVVNEAYSDPRIVTAAALDTLGDHTPITQ-RFAAIARASRMGD 310 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPAIESCINTQALKAF 367 + + +++E R++G NL + + +V+ G A + +PAI +T A F Sbjct: 311 TPSRQLLERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYVPAIR---DTLAASFF 367 Query: 368 RTNLPVVRSELDHRS----AIGAFALVKRAML 395 + V +L + AIGA ALV +A Sbjct: 368 ARDNHAVHVQLSQSAETAPAIGAAALVLQAQF 399 >UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KTE3_CLOPH Length = 381 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 175/388 (45%), Gaps = 23/388 (5%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 +G+ +L++ +NS V I Q PISR I+++ L A+++ I I L+ E+ + Sbjct: 3 LGSKELIRDINSKLVLETIIQNEPISRAAISKKLGLTKATISAIVSDFINDKLVVEIGSE 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 + GR+ I + + +AI V + + + DL + + + P ++ L Sbjct: 63 DTGLGRKPILLSFHKKAGYAICVDIEVSRISCMISDLKGEQRSVKQIKTP--SESNLVPV 120 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L++ I Y++ LI I++ + G+V + ++ + P+ + L E L F V Sbjct: 121 LIDLIQSMESEYEKTPYGLIGIAIGIHGVVHQN--EVLFTPYYNLNGINLSEQLGSYFGV 178 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ AL E + + L +H G G GII N +++ G +GN GE GH Sbjct: 179 PVFLENEANLSALGEKAYLPETYTSLANL-SIHSGVGLGIILNKQLYTGYHGNAGEFGHT 237 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 V G C CGN GCLE A+ A LLK+ Y LDD + A K + Sbjct: 238 IVVMNGRTCPCGNQGCLEQYASERA-------LLKE-YSEDASLDDLLL-----AYEKKE 284 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A V+E+ ++ + N +P+ I+I T A L I +N + + Sbjct: 285 PKAMGVMEHFVNYMAVCVNNLQNTISPEIIIINSAFTNAYPELAEMIAKKVNNKLVD--- 341 Query: 369 TNLPVVRSEL-DHRSAIGAFALVKRAML 395 +P++ S L DH +G ++ + L Sbjct: 342 -KIPLIASNLKDHSILLGGITVLVKNFL 368 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 9/338 (2%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 G A+ GN +K N V +++ YGP+SR +IA ++ L+ + T I L GLI E Sbjct: 3 GTARGGNAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLIAE 62 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 +++ GRR I + G+ +GR L DLS++++A E Sbjct: 63 EKGESAGAGRRPGLIRLSPASPLVCGITIGRRRCEAVLADLSAQIVARESACYDNALDGP 122 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALE 183 LL + + +R R + I V G +D +G + P+ + + + L Sbjct: 123 RLSELLARLCSRL--LKRVDRPVAGIGVAALGPLDARAGTLLNPPNFYGIGHLPVRAILS 180 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 + + C + HD+ + ALAE +GA Q E +++ G GAG++ +G +F G G G Sbjct: 181 DASGLPCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGVAGLSG 240 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC-TIKTICK 302 E+GH+ + G +C CG GCLE A+ +R L + Y +R Sbjct: 241 ELGHVSINFEGPQCACGGRGCLECYAS-----ERALLAYAREYAARTGTAAPENWSDAIS 295 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVI 340 AA GD+ + +E ++ ++ A+ L + ++ + Sbjct: 296 AAGTGDAACAAALERYCGYVAAALSNALCLIDVHRVFV 333 >UniRef50_C5C4B6 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C4B6_BEUC1 Length = 405 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 103/393 (26%), Positives = 176/393 (44%), Gaps = 41/393 (10%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG-GRRAI 77 + ++ +LI ++ +IA ++ ++VT+ L+ GL+ E D + G GR + Sbjct: 24 GAGSILQLIRSGSAVTISRIAATLGVSRSTVTERVDLLMSSGLV-ESDGETQMGRGRPSA 82 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFI 137 +G++LG + + + DL+ +VL + T H +L+A+ + + Sbjct: 83 RFAFRPDTGLTVGIQLGMSGSRVAVTDLAGEVLTSRTV---DVDVATGPHVVLDAVCEAV 139 Query: 138 DS----YQRKLRELIAISVILPGLVD-------PDSGKIHYMPHIQVENWG---LVEALE 183 D R+ EL +V +PG V+ PDS +W + + Sbjct: 140 DDELALVGREREELWGAAVGVPGRVELATADVTPDS-----------PSWAGFDVAAHVG 188 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 V +G D+ LALAEH + D + V+V G GI+ + R G G G Sbjct: 189 AALGVPVRMGRDVSMLALAEHRYN-WPDARVLLCVKVGTAIGCGIVVDHRTIDGGAGLAG 247 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 EIGH V +C CGN GCL +A AA+ R L + G + + + I + Sbjct: 248 EIGHTAVSGSTAQCPCGNRGCLNATSAGAALLPR---LAEMGVTA------SSTREIMRL 298 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A +GD ++++ GR +G+ +A AINL NP +V+ G + +A LL I + T+A Sbjct: 299 ALQGDPTTAQLVRQAGREVGEVLAGAINLLNPDVVVVWGYLADARDNLLAGIREAVATRA 358 Query: 364 LKAFRTNLPVVRSEL-DHRSAIGAFALVKRAML 395 + +L + R+ L + +GA L +L Sbjct: 359 VPPATESLTIARASLGEDAGTLGAATLAIEMLL 391 >UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS614 RepID=A1SG81_NOCSJ Length = 400 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 96/362 (26%), Positives = 175/362 (48%), Gaps = 28/362 (7%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG-LIKEV 65 AQ G++ ++ N A V I+Q G +SR + ++ L+ ++V+ + QL+++G L++ + Sbjct: 2 AQGGSLGELRAANLALVISTIEQTGALSRADLMRRTGLSRSTVSSLVVQLLDQGVLVERL 61 Query: 66 DQQASTGGRRA-ISIVTETRNFHAI--GVRLGRHDATITLFDLSSKVLAEEHYPLP--ER 120 D+ GR I+ E + G+ +G + L S ++ E L + Sbjct: 62 DRGTPYKGRSGRPPILLELAALTGVVAGIDVGHRHVRVALARPDSTIVLERSVALDVDDS 121 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW-GLV 179 +++++ + + + + +L ++ + +PG VD + M + W GL Sbjct: 122 PRESMDR-VATLLDELLAESGHELSDVRGAGLGIPGPVD----RGGRMTSGILPTWRGLQ 176 Query: 180 EALE--ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 A E ER V V +D A E +GA+ D I V+ G GAG+I +G + G Sbjct: 177 PAAELAERTGVIARVHNDAHLGARGELAYGAACGHRDVIYVKASTGIGAGLIVDGHLVTG 236 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 G GE+GH+QV+ G C CG+ GCLET + +++ LL+ Y ++ T+ Sbjct: 237 ATGIAGELGHVQVDVNGVMCRCGSRGCLETEVSG----PKLVELLQPAYDEQL-----TV 287 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 I + A GD+ A+ + GR +G+ +A N+ NP+++V+ G A PA+++ Sbjct: 288 PRILELAQSGDAGATRALNDFGRRIGRVLANIANMLNPEQVVVGGGFGAA-----PALQA 342 Query: 358 CI 359 I Sbjct: 343 GI 344 >UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35AB4 Length = 401 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 155/342 (45%), Gaps = 20/342 (5%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ----QAST 71 K N + + I + PI+R IAE++++ PA+VT LI G ++E+ + +AS+ Sbjct: 8 KASNRSRILECIYRNAPIARTDIAEETEITPATVTMNVTTLISEGFVRELGEVSTDEASS 67 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 G +R + + R + +IG+ + I + DL ++ + P E + A++ Sbjct: 68 GRKRVLIDIIPDRAY-SIGLEFTQKALVICITDLKGRIRFQRTEPFNEELAGRITDAIIG 126 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA--LEERFKVT 189 + + E++ I +PG ++ + + + W + +E+ + Sbjct: 127 GVKDLVAESGISWDEIVGIGAAVPGHMNGSASSLI----TNRKTWQNFDPKRIEQELPLP 182 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 ++ R +AL E+ F + + V G + +G +F+G N GEIGH Sbjct: 183 IVCENNARCMALGEYLFSPQESPDSFAFFHVGMGMFCASVVDGEMFLGENYVAGEIGHTI 242 Query: 250 VEPLGERCHCGNFGCLETIAA------NAAIEQRVLNLLKQGYQSRVPLDD-CTIKTICK 302 V G RC CG +GCL+T A+ NA + R N +S V D TI+TI Sbjct: 243 VSEGGRRCECGKYGCLQTYASENHLIRNARLLYR--NTPNTILRSLVSDDSQITIETITT 300 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEI 344 A + GD + I ++LG TI+ + NP KI + G++ Sbjct: 301 AYSMGDPVIGMYIAEALKYLGITISNIAIITNPGKIFLHGQL 342 >UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1T2_ERYRH Length = 392 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 155/325 (47%), Gaps = 20/325 (6%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV--DQQASTGG 73 K +A + L+ GP+SRI I++ + PA+V+ +T+ LI +I E+ D + G Sbjct: 7 KTKQTALILDLLYSKGPLSRIDISKSLHITPATVSDLTQHLINDKIICEIGEDTDNTRVG 66 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 RR I + + + +GV L H T+ L D +++ EE + L + +H + + Sbjct: 67 RRKILLGLLPNHSYYLGVELFEHSFTLALSDNLNEICFEEAFTLSKS-----DHVRHDLL 121 Query: 134 AQFIDSYQRKLRE--LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + I+ + +K + + +I + +PG D S I H N+ L + L++ K + Sbjct: 122 VKTINDFLKKHSDTAVTSIGIAIPGHYDKTSAHILTNNH-SWANFSL-DYLKKHLKYPVY 179 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 +++ ++A+ E FG + + + + RG + G ++ N VGEIGH+ V Sbjct: 180 FENNVNAMAIRERLFGHDKTDANFLFLHFRRGIFCSYVYQGDLYARNNYFVGEIGHLVVN 239 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL-----DDCTIKTICKAANK 306 P GE+C CG GCL+T A+ + + L + + + ++ + +A + Sbjct: 240 PFGEQCECGKIGCLQTYASQTWLLHKASLLFNSSANTYLKQLVNEEHELSMDILLQAYHL 299 Query: 307 GDSLASEVIEYVGRHLGKTIAIAIN 331 GDS +++E L AIA+N Sbjct: 300 GDSAVIQLLENAINFL----AIALN 320 >UniRef50_C7IBW3 ROK family protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IBW3_9CLOT Length = 323 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 13/309 (4%) Query: 91 VRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAI 150 VR+ +D T+ KV + + + + + I I+ +++ + L I Sbjct: 15 VRIATYDETLGYISDIKKV----KFKKSGICELEISENICDLITSAINEMKQENKVLKGI 70 Query: 151 SVILPGLVDPDSGKIHYMPHIQVEN-WGLVEALEERFKVTCFVGHDIRSLALAEHYFGAS 209 + L L + +G I P+ N + L + L+ +F V + D S AL E GA Sbjct: 71 GISLAALFERTTGNIVKWPNNMTWNGFELKKYLQSKFNVPVILEDDANSAALGEKLEGAG 130 Query: 210 QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIA 269 + ++ + + G G G+I N + G NG GEIGHI+V G C+CGN GCL+ + Sbjct: 131 KGHDNLAYITISTGVGCGLILNNTLITGANGWAGEIGHIKVVEEGPECNCGNKGCLQALV 190 Query: 270 ANAAIEQRVLNLLKQ-GYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAI 328 + A+ +R L K G + L + + A KGD+ A EV G H+GK IA Sbjct: 191 SGPALLKRFKELKKGCGDTELIQLPEVAV-----LAEKGDADAIEVFSRAGMHIGKIIAN 245 Query: 329 AINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL-DHRSAIGAF 387 + L + VI G + EA +LL ++ Q LK F + + +S L D IGA Sbjct: 246 IVMLLDISAFVIGGGVAEAGNILLDSVRETAAHQ-LKYFNREVKIEKSALADINGVIGAL 304 Query: 388 ALVKRAMLN 396 ++ R + N Sbjct: 305 GIIYRHINN 313 >UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A233_RHILW Length = 321 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 19/307 (6%) Query: 88 AIGVRLGRHDATITLFDLSSKVLAEEHYPL-----PERTQQTLEHALLNAIAQFIDSY-- 140 AIG+ LG L D ++L P P+R +L I D Sbjct: 5 AIGIDLGGTQVRAALVDEHGRILTRLAEPTDALAGPDR--------VLAQICGLADRLLA 56 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSL 199 K ++ + V PG +D +G +P + ++ L L++RF + +D + Sbjct: 57 ASKPASVVGVGVSAPGPLDTVTGVATDIPTLPGFVDFPLKAELQKRFAFPVDLENDAIAA 116 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 A+ E FG + ++ + V V G G G+IS+GR+ GR G +GH+ V P GE C C Sbjct: 117 AVGEWQFGIGKGLDNLVYVTVSTGIGGGVISDGRVVRGRKGMAAHVGHMSVVPNGELCPC 176 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI--KTICKAANKGDSLASEVIEY 317 GN GC E + A +R + + + + I +++ AA GD LA+++++ Sbjct: 177 GNRGCFEAYGSGPAFARRAQMRAMESRDTTLGSNGGAIDSRSVFAAARNGDRLANQLVDE 236 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 LG+ I++F+P IV+ G ++ L P I++ I+ A+ AF+ ++ VV + Sbjct: 237 EAEILGRGFTNLIHIFSPDIIVMGGGLSHEFDRLQPGIQAYISQWAMPAFK-DVKVVLAA 295 Query: 378 LDHRSAI 384 LD S + Sbjct: 296 LDQNSGL 302 >UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KQ9_SYMTH Length = 391 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 94/344 (27%), Positives = 158/344 (45%), Gaps = 16/344 (4%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N L+KQLN AV I GPISR+++A + L+ +VT I R L++ GL++E S Sbjct: 6 NARLMKQLNRQAVLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEKGLGQS 65 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 +GGR I ++ + V L L DLS + E L ++ Sbjct: 66 SGGRPPIMLLFNPAARFVLAVCLEGERLWGGLADLSGALQVEAEGVLSPDPHDP-ARSVC 124 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG----LVEALEERF 186 + + ID + L A++V +PG+ + G + + P + W L + L + F Sbjct: 125 DFLQGLIDRSGVEASRLAAVAVGVPGIAHTE-GTVSHAPSL---GWWQEVPLRDRLRQCF 180 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V V +D+ +AL E++ GA + L+ V G GAGI+ +G +F G GE+G Sbjct: 181 GVPVVVENDVNLMALGEYFQGAGVGVANLALMHVSEGIGAGILIDGNLFRGARNAAGEVG 240 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC-TIKTICKAAN 305 ++ + PL R +FG E ++ AI Q++ Q P DD ++ + + A Sbjct: 241 YLPLGPLSPR-RPQDFGLFELHYSSRAIRQQL-----QAALPEAPGDDGRPVRRLRELAE 294 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 G A + RH +A + NP+ +++AG+ + + Sbjct: 295 AGLPWARSLFGDALRHWAHAVASITCILNPELVLLAGDAVDCGR 338 >UniRef50_B5JLF7 ROK family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLF7_9BACT Length = 400 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 102/385 (26%), Positives = 166/385 (43%), Gaps = 6/385 (1%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 ++++N+ + + + GP+SR QIAE+ L A+V+ I LI L+ E + + GR Sbjct: 10 IRRMNAVSALNQLRRGGPMSRAQIAERLGLTRATVSNIVADLIGVSLVTESEFEEGGLGR 69 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT--QQTLEHALLNA 132 R + + I V L + L ++ L L ++ + AL Sbjct: 70 RGMLLELNPACGSMIAVELDIDRVAVVLANVGMDFLWRGEVALARNVSPEEGMRSALELV 129 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 + R LR + I V GLV+ SG++ P + + E RF V FV Sbjct: 130 EEVMEEGESRLLR-CLGICVAWAGLVERKSGELALGPTSGWAGVAIKQNWEARFGVPVFV 188 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 ++ + A+A H+ G + D I + + G AG+ +G + GR G G++GH+ Sbjct: 189 ENEAHAGAIAAHHLGEPRGEADLIYLSLGVGLSAGVFVDGELLRGRQGFAGQVGHVPFVA 248 Query: 253 LGERCHCGNFGCLET-IAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 GE C CG GC T I A+ + R L G+ + D I+ IC A GD Sbjct: 249 GGELCGCGKCGCWVTEIGASGVL--RKLERAGVGFGAGEGGDLGWIERICDLAAAGDERV 306 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + GR +G+ + + +FNP ++VI G + K+ I + L R L Sbjct: 307 LAALAEEGRQIGEGLVQLVQVFNPSRVVIGGHLRRLVKLCEGEIRRALEAGVLFPMRDGL 366 Query: 372 PVVRSELDHRSAIGAFALVKRAMLN 396 V SE + +G A V A++ Sbjct: 367 TVAVSESEEDQLMGCLATVFDAVMK 391 >UniRef50_B9XME9 ROK family protein n=1 Tax=bacterium Ellin514 RepID=B9XME9_9BACT Length = 327 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/314 (25%), Positives = 151/314 (48%), Gaps = 8/314 (2%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLR 145 + +GV LG +F S K++ PER T+ + + +D L+ Sbjct: 10 YLVGVDLGGTKILAGVFTPSLKIVGRSKMSTKPERGTSTVIERVARCVQDAVDECDLDLK 69 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 ++ + + PG VDP+SGK+ + ++ ++ L + LE++ +V F+G+D L H Sbjct: 70 QVRGVGIGSPGAVDPESGKVMFAGNLGWKDVSLKKELEKQLEVPVFLGNDCNVCTLGVHE 129 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 + + + + G G G+I G+ F G N GE+GH+ +E G +C CGN GC Sbjct: 130 VELESKPRNMVGIFLGTGIGGGLIIEGKPFSGFNRTAGEVGHMVLEVNGPKCTCGNRGCW 189 Query: 266 ETIAANAAIEQRVLNLLKQGYQSRVP------LDDCTIKTICKAANKGDSLASEVIEYVG 319 E +++ +A+ +++L +K G ++ + L D + KA +GD ++E Sbjct: 190 EALSSRSALFRQILEAVKDGQKTVLTEMLGSDLKDLRSGDLRKAIKQGDKFVEHIVEEAA 249 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 ++ G +A IN+ +P+ +VI G + +A + +L I C A + ++ S+L Sbjct: 250 KYTGIAVANLINVLSPEVVVIGGGLMDALENEMLSVIIECAREHAFPGSDKGVKILASKL 309 Query: 379 DHRSAIGAFALVKR 392 + I A++ R Sbjct: 310 GDDAGITGGAVLAR 323 >UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5VW31_BRUO2 Length = 402 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 160/360 (44%), Gaps = 31/360 (8%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ-----ASTGGRRAI 77 V +++ GP SR ++A + L+ ++T +T QL++ G I E D + GR + Sbjct: 8 VLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMPGRPPV 67 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ-TLEHALLNAIAQF 136 S+ + GV +G + + DL+++++ + L H + + Sbjct: 68 SVRLVPSAHYVAGVYIGAEAVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTADVLRNL 127 Query: 137 IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDI 196 + + L L+ I + +PG VD + + + +A+E + V H++ Sbjct: 128 VQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSINTGWRDVAFADAMEAELNIPTVVEHNV 187 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIF-IGRNGNVGEIGHIQVEPLGE 255 ++ALAE ++G Q C + V + G G++ +G F G +G V E+GHIQ++P G Sbjct: 188 TAMALAEAHYGIGQGCPAVLYVYL----GTGLVVDGMPFRPGGHGAV-ELGHIQIDPQGA 242 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 C CGN GCLET + +RVL ++G S PL A + +L E Sbjct: 243 LCACGNRGCLETF-----VSERVLR--ERGAGSAEPL--------LAALARNPTLHDE-- 285 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 V H +A A+NL P IV+ G EA + + + + L R L + R Sbjct: 286 --VAGHFTTALANAVNLLTPDLIVLGGHFAEAPEAFYARLRCDLPPRVLPHMRDVLRIER 343 >UniRef50_Q023J0 Glucokinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023J0_SOLUE Length = 313 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 81/318 (25%), Positives = 150/318 (47%), Gaps = 28/318 (8%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELI 148 +G+ +G + + D +LA P P + F+ + Q +R L+ Sbjct: 3 LGIDIGGNQIRAGMVDADGAILASRTLPTP------------GDLDTFLPTLQDAIRWLM 50 Query: 149 -------AISVILPGLVDPDSGKIHYMPHIQ--VENWGLVEALEERFKVTCFVGHDIRSL 199 + V G++DPD+ +I +P ++ + + + +V F +D R Sbjct: 51 ETTSLPEGVGVGCKGIIDPDTTRIEALPGTMHFLQGLRIADLVGLPLEVPVFADNDARVA 110 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 E +GA++ ++ +++ + G G I NGR+ G +G G +GHI +EP G C C Sbjct: 111 LAGEMVWGAARGHDNVLMLTLGNGVGGAAILNGRLLRGHSGVAGHMGHITIEPNGAVCAC 170 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQS------RVPLDDCTIKTICKAANKGDSLASE 313 GN GCLET+ + AIE + +G S R T +TI +AA + D++A Sbjct: 171 GNRGCLETVFSARAIEAEAQAAVLRGCDSVLTRLFREQPQLATCRTIFQAAREEDAVARA 230 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 VI LG +A ++LF+P+ +++ G + +A + L+ ++ + +++ ++P+ Sbjct: 231 VIGRAIFKLGAALAGLLHLFDPEIVILGGSVADAGEDLIIPLQEEVWSRSRGLLGRDVPI 290 Query: 374 VRSELDHRSAI-GAFALV 390 V + +S I GA LV Sbjct: 291 VEQMVADKSGIVGAAGLV 308 >UniRef50_C2BT73 Transcriptional repressor n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BT73_9ACTO Length = 442 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/346 (23%), Positives = 153/346 (44%), Gaps = 21/346 (6%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 YR+I +SR +A ++ L ++VT++ L++ G+I+E + GR +I + Sbjct: 46 TYRIITGSEVMSRADLAHETGLNRSTVTRLIEHLLDFGIIREGSTRVGPSGRPSIMLTPA 105 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAE--EHYPLPERTQQTLEHALLNAIAQFIDSY 140 R IG +GR + + DL ++AE + +P + Q+ L + + Sbjct: 106 RRTHGGIGAEVGRDYISACVMDLRGNIIAEQFDQVDVPAYSPQSTLGKLATMVNELTSQI 165 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH----DI 196 Q L I+ G++ + +H PH+ N L + + + V + ++ Sbjct: 166 QHSGLSLCGITCGFSGIISSSTSNLHMSPHLGWRNIDLEKHFRSKLHIEVPVDYQNTANL 225 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 +LA + + D I + + G+ ++ +G++ G +G GEI HI V + Sbjct: 226 SALAESIARQKTGHELSDFIFISQNSAIGSALVLDGKVSSGLHGWAGEIAHITVSDEDKP 285 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIE 316 C CG GCL+ A + +R G + P + + + +KG++ +E + Sbjct: 286 CDCGAVGCLDAYIDKANLLERA------GLPANAPWEQ-----LFASLHKGNAQVTETVR 334 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 GR+LG+ ++ INL + IV+ G + K LLP E + + Sbjct: 335 LCGRYLGRALSTYINLVDVTTIVLGGVL----KKLLPYYEDALRDE 376 >UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCW6_SANKS Length = 429 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 167/361 (46%), Gaps = 15/361 (4%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 + +++ + I G +SR+ + + L A+V+ + R+LI+ GL+ E + STGG+ Sbjct: 6 RSASTSVIVDAIRASGTVSRVGLTVTTGLTGATVSTVVRRLIDDGLVVETGRAESTGGKP 65 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA--I 133 + + + +A+GV L T T+ DL+ +A +P P T+ E + A + Sbjct: 66 RVLLELDPTARYAVGVHLDHASITCTVTDLAGTSVALSTHPGPG-TRSPAEVLVETAAEV 124 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQV-ENWGLVEALEERFKVTCFV 192 + +D ++ I + PG + D G P ++ ++ + L + + Sbjct: 125 DRLVDEAGVDRSRVLGIGFVAPGPLTSDGGMHRTPPEMRAWTDYPITSELGRLTGLPVVL 184 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D + A+ EH+ G + ++ + G GAG++ +G + G +GN GEIGH ++ Sbjct: 185 ENDATASAIGEHWAGGTGTENSFAVLYMGTGLGAGLVLDGVAYRGSSGNAGEIGHTTLDL 244 Query: 253 LGERCHCGNFGCLETIAANAAI---EQRVLNL-----LKQGYQSRVPLDDCT--IKTICK 302 G C CG GC+E +A AA+ +R +L L G P + + + Sbjct: 245 DGPVCWCGTRGCVEVLAGPAAVVAEARRSPDLAAAAGLSTGTSGSEPQPSVVSDLAAVAR 304 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPAIESCINT 361 AA G A +V+E R++ A+NL + + +V+ G + A + LPA+ + + Sbjct: 305 AAAAGHPGARDVLERSARYVAAAALTAVNLLDVRMLVLTGASLAAAGDIYLPAVRGVLAS 364 Query: 362 Q 362 Sbjct: 365 S 365 >UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MXJ9_SACVD Length = 413 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 177/404 (43%), Gaps = 34/404 (8%) Query: 8 QIGNVD--LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 IG D V++ N A V I ISR +A ++ L A+V+ + +L+ L++E Sbjct: 3 DIGPADQHTVRRHNCALVLDTIAASPGISRAGVAARTGLTKATVSSLVDRLVTASLVRED 62 Query: 66 DQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 +Q +G GRR S+ H +GV + T L L+ +V +EH + ++ Sbjct: 63 GRQHRSGPGRRGTSLSLSPHGPHGLGVEIAVDHVTTCLIGLTGEV-RDEHTRRVDNRGRS 121 Query: 125 LEHALLNAIAQFIDSYQRKLRELI---AISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 + L + ++ R R I I V +PGLV+ +G + P++ + L+ Sbjct: 122 VGRVLARIAREMNEALDRAHRNGIVVGGIGVAVPGLVEAANGWVRMAPNLGWRDVDLITE 181 Query: 182 LEERFKVTC--FVGHDIRSLALAEHYFGASQDCEDS-----ILVRVHRGTGAGIISNGRI 234 L R V V + LA CED+ + V G GAGI+ +G + Sbjct: 182 LHRRVAVPFGELVVGNEADLAALAELAAPRLHCEDAAPDSFVYVSGEVGVGAGIVLDGEL 241 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 F G +G GE+GH V+ G RC CG GCLE +A AI R +DD Sbjct: 242 FRGTHGFGGELGHFPVQQRGPRCSCGARGCLERLAGQDAI------------LDRAGVDD 289 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 + T+C GD A+ GR LG ++ +NL + +V+ G L P Sbjct: 290 --VDTLCVRLEDGDRTAAAAARSAGRLLGTALSGVVNLLDVSTVVLGGIYAR----LYPW 343 Query: 355 IESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGI 398 + ++T+ L A + P RS RS +G A V+ A ++ + Sbjct: 344 LAGPLHTE-LTARVVSTP-WRSVDVRRSTVGPEAAVRGAAISAL 385 >UniRef50_UPI00017890E0 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017890E0 Length = 391 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 162/342 (47%), Gaps = 33/342 (9%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI---KEVDQQAS 70 L+K +N V LI GPISR+++AE++ L+ +VT I +L++ +I + +D +A Sbjct: 12 LLKSINQQKVLFLIYSEGPISRVELAEKTGLSRQTVTNIVNRLLKEKIIVTGELIDLEAG 71 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH--A 128 +G R+ + + + +F+AIG+ L +F+L + +A ERT Sbjct: 72 SG-RKRVGLHINSGHFYAIGLELAGKYIRGKVFNLRQEAVAS-----AERTSNKYGSIDV 125 Query: 129 LLNAIAQFIDSYQRKL---RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 L+ + + ID ++ ++ I + + GLVD G + P I V L + LE++ Sbjct: 126 LMQLLHEVIDELLTQVPNTSKVKGIGISMQGLVDSQHGIVLRTPGIGVHRLPLKQLLEDK 185 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + + ++ +D+ L++ E+ G +D ++I ++ GTG I+ + +I G + GE Sbjct: 186 YDIPVYIENDVNLLSVNENMNGCLKDSNNNITIKFDYGTGGAIVHDKQIIAGSSFVAGEF 245 Query: 246 GHIQVEPLGER---CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GH + GE CHCG GCL T+A+++ + + CT++ + Sbjct: 246 GHYK-GFYGEDAYPCHCGRSGCLTTLASSSGLSVSI---------------KCTLEEFAE 289 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEI 344 GD + E + + + I NP +++ G + Sbjct: 290 GIRTGDPKFLGLYEKIVDGIAIAVTNIITFINPDSLLMTGRV 331 >UniRef50_C3JBE1 Glucokinase n=16 Tax=Bacteria RepID=C3JBE1_9PORP Length = 331 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 145/292 (49%), Gaps = 13/292 (4%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRE 146 + IG+ +G + + + + +LA E +P R+ + I ++I + ++ Sbjct: 5 YTIGIDIGGTNTVVGVVATNGTILAREKFP--TRSCGANFTCFTDKIERYIYALTQQYNL 62 Query: 147 LIAISVILPGLVDPD----SGKIHYMPHIQV-ENWGLVEALEERFKVTCFVGHDIRSLAL 201 I I G+ P+ +G I + ++ E + +V L+ER + + +D ++ A+ Sbjct: 63 AGKIDGI--GIGAPNGNHGNGTIAFASNLPWKEPFPIVRLLQERTHLPVALINDAKAAAI 120 Query: 202 AEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGN 261 E +GA++ D I++ + G G+GI++NG + G +G GE+GH + G C CG Sbjct: 121 GERTYGAARGMRDFIIITLGTGVGSGIVANGELIFGHDGLAGELGHFIIRRGGRPCGCGR 180 Query: 262 FGCLETIAANAAIEQRVLNLLKQGYQS----RVPLDDCTIKTICKAANKGDSLASEVIEY 317 GCLET + + + + LL++ + V ++ T K + AA GD +A +V E Sbjct: 181 CGCLETYCSARGMARTAIELLQESTEDSPLRHVKEEEITSKAVYDAAEAGDPIAQKVFEM 240 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 G LG+++A + +P+ I++ G +T A + LL I +N L ++T Sbjct: 241 TGEILGESLADFMTFSSPEAIILFGGVTAAGERLLQPIRKALNKNLLCVYQT 292 >UniRef50_C3WAJ9 Glucokinase n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAJ9_FUSMR Length = 350 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 155/309 (50%), Gaps = 13/309 (4%) Query: 51 KITRQLIERGLIKEVDQQASTGGRR-AISIVTETRNFHAIGVRLGRHDATITLFDLSSKV 109 KI + +E+ +I E + STGGRR ++ + + + +GV IT D+ + Sbjct: 3 KIINEFLEKKIIIEEREGESTGGRRPSLLNINKEKIGQVLGVYFAPTFVQITCGDIDGSI 62 Query: 110 LAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMP 169 + Y L + L ++ + I+ +K +++ ISV++ GLVD + G + P Sbjct: 63 FSTRRYRLGD-----LGVEIIEETEKIIEKELKKNKKIKVISVVMNGLVDGEKGISIFSP 117 Query: 170 HIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGII 229 H +N +V+ +++FK ++ +D+R++AL E FG + + +++ V G G I Sbjct: 118 HYNTKNIPIVDRFQKKFKKKVYIENDVRAMALVEKVFGECKKNYNFVVLNVEEGVGGSIY 177 Query: 230 SNGRIFIGRNGNVGEIGHIQVEPLG-ERCHCGNFGCLETIAANAAIEQRVLNLLK--QGY 286 N ++ G GE+GH+ V+ E+C CG GCLET +N AI ++++ ++ Y Sbjct: 178 LNDMLYHGYGSMSGELGHMVVKRNSLEKCSCGKRGCLETEVSNRAIIKKIMTQIRINNQY 237 Query: 287 QSRVPLDD----CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG 342 S + D IK + ++ D L+ V +++ I + I++ NP+KI++ G Sbjct: 238 SSLKKILDEGKKLEIKDVLNGVDERDMLSLSVTGEAIQYIAYAIDMIISVINPEKIILYG 297 Query: 343 EITEADKVL 351 E + + + Sbjct: 298 EFFQNEYIF 306 >UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobacteriaceae RepID=Q11DN8_MESSB Length = 442 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 106/409 (25%), Positives = 177/409 (43%), Gaps = 26/409 (6%) Query: 8 QIGNV------DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 Q GNV D +++ N A V + Q SR +IA+ + L+ ++++ I+ LI G Sbjct: 18 QGGNVTAGIRHDEMRKRNRALVIAAVRQSDQPSRTEIAKLTGLSHSTISTISAGLIAEGT 77 Query: 62 IKEVDQQASTG-GRRAISIVTETRNFHAIGVR---LGRHDATITLFDLSSKVLAEEHYPL 117 ++EV+Q T RR V + N A V L + ++ L D V+ + + L Sbjct: 78 MREVEQDGDTAPTRRGRPQVALSLNPDAASVACLYLSFNSLSVVLADYRGDVINQRTHRL 137 Query: 118 PERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG 177 T LL A + R E + IS + G+ D ++ + P + + Sbjct: 138 --DTLAMSRQDLLEATIAALQDLTRDRGEFLRISCAVQGITDSAGRELLWSPITPLSHLP 195 Query: 178 LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 + ALE+ F V V +D +A A + + ++ I + + G G G++ NG++F G Sbjct: 196 VGAALEDAFGVPTTVQNDSNMMAEALRWLNPKRYSDNFIAILLSHGIGMGLMLNGKMFSG 255 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 + GE GH+ +P G C CG GC+E A N AI +R + P+ D Sbjct: 256 TRSSAGEFGHMIHKPGGALCRCGRMGCIEAYAGNYAIWRRASGRSPE----ERPVADIEA 311 Query: 298 KTICKAANKG---DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 + K A + + A + GR +G + L +P + I G+ T A +L P Sbjct: 312 GEMEKLAQRARCEEGPARQAFREAGRAIGFGLGNLFALIDPAPVAIIGQGTAAFDILEPE 371 Query: 355 IESCINTQA------LKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNG 397 I S + A +F T +P R + H +A+ A + R + G Sbjct: 372 IRSALAETAGGQHAEAISFET-MPRARPLILHGAAMTALTDLDRHVFAG 419 >UniRef50_C1A104 Glucokinase n=9 Tax=Actinomycetales RepID=C1A104_RHOE4 Length = 333 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 14/272 (5%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELI 148 +G+ +G ++ D+ +VL P P+ + + LE L + + + + E+ Sbjct: 7 VGIDVGGTSIRASVVDVDGQVLEMIQAPTPQ-SARALEDGLDRVVRELVTRH-----EVS 60 Query: 149 AISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGA 208 A+ + + G + D + + PH+ + + L +R + + HD + A AEH FGA Sbjct: 61 AVGLAVAGFITSDRSSVRFAPHLPWVDAPVGSDLSKRLGLPVVLEHDANAAAFAEHRFGA 120 Query: 209 SQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETI 268 + + ++V + G G ++ NG ++ G +G E+GHIQV P G +C CG GC E Sbjct: 121 AAGGRNVVMVAIGTGIGGALLINGELYRGSHGVAPELGHIQVVPGGRQCACGKRGCWERY 180 Query: 269 AANAAIEQRVLNLLKQGYQSRVPL--------DDCTIKTICKAANKGDSLASEVIEYVGR 320 + A+ + LL + L T + I AA GD LA I R Sbjct: 181 CSGTALVDTAIELLAADPAASTVLAREVAVDPGSLTGRRIANAAQDGDPLALATIAEFTR 240 Query: 321 HLGKTIAIAINLFNPQKIVIAGEITEADKVLL 352 L +A+ ++++P +VIAG + + + L Sbjct: 241 WLAVGLAMVGDVYDPDLVVIAGGVASSAPLFL 272 >UniRef50_Q7NF96 Sugar kinase n=1 Tax=Gloeobacter violaceus RepID=Q7NF96_GLOVI Length = 294 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 33/306 (10%) Query: 85 NFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKL 144 + ++ GR+D +L+S +A P P + L A L+A+ +D Sbjct: 8 DLGGTAIKAGRYDGQGR--ELASATIAT---PRPSTPEAVL--AALSALVAVLDPG---- 56 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQVENW---GLVEALEERFKVTCFVGHDIRSLAL 201 RE +A+ V +PGLVD G++ Y I ++ W + LEE+ ++ +G+D L Sbjct: 57 REAVALGVGVPGLVDV-GGRLVYT-CINLDGWRDVPMARLLEEKTGLSTVLGNDANLAGL 114 Query: 202 AEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGN 261 E++ G++ I + + G G +I N R+F G +G GE+GH+ +P G RC+CG+ Sbjct: 115 GENWLGSASRFGHVIFITLGTGVGGSLIHNRRLFTGAHGLGGELGHMVFDPRGPRCNCGS 174 Query: 262 FGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRH 321 GCLE A AI + R LD + + A GD A E VGR Sbjct: 175 SGCLEQFIAAPAIAR------------RFGLDPAVLG---ERAAAGDPQALECWRQVGRD 219 Query: 322 LGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHR 381 LG + +NL +P+ +VI G ++++ L E+ I+ +++ R L ++++EL + Sbjct: 220 LGYALVGLVNLLDPEAVVIGGGVSKSCPYFLSEAEAEIDRRSIIK-RPWLQLLQAELGNE 278 Query: 382 SA-IGA 386 + IGA Sbjct: 279 AGCIGA 284 >UniRef50_C8QHM3 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8QHM3_9ENTR Length = 373 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/357 (27%), Positives = 172/357 (48%), Gaps = 38/357 (10%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 +A + RLI + PIS+ + +S L+ ++V++ T +L+ G+++E+ + + GR + Sbjct: 7 TARILRLIVENAPISQSDLKVRSGLSMSTVSQATNRLLTGGIVQELGLRRVSMGRPKTLL 66 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDS 139 + +G++L I L DL ++ E+ P T + L AL A+F+ Sbjct: 67 GLNPDHASVVGIQLNAERNLIVLTDLGGNIIGEQQMPSGAMTPKQLGDAL----AKFLRG 122 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG---LVEALEERFKVTCFVGHDI 196 + K ++ AI + L GLVD +G Y +V +W + LEERF + F+ +D Sbjct: 123 VEGK--KVGAIGLALSGLVDASNG---YCVRSRVLDWDNVPIARLLEERFSLPVFIENDA 177 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 +LA+A FG + +I+ +G GAGI+ + +++ GR+G GEIG+ + ER Sbjct: 178 NALAMAALVFGQLGHAQSAIIATFGKGIGAGILLDRQLYRGRHGKAGEIGNALLGDGSER 237 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP--LDDCTIKTICKAANKGDSLASEV 314 LE +A++ AI QRV Q VP L D ++ + + V Sbjct: 238 -------LLEDVASSQAILQRV----AASLQDEVPQALRDLDMRPTPEVLS--------V 278 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + G LG ++A ++P + +A E A ++LL I TQ+ + +R L Sbjct: 279 LAEAGHQLGMSLANLSIAYDPDVVYLAMEPQMASRILLDHI-----TQSFQNYRLKL 330 >UniRef50_C8SG46 ROK family protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SG46_9RHIZ Length = 401 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 100/384 (26%), Positives = 172/384 (44%), Gaps = 27/384 (7%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS---TGGRRAISI 79 + R + + G +S QI + LA ++V+ L + G++ E + GR A ++ Sbjct: 22 IVRCLSERGVLSASQITHVTGLARSTVSTALNGLRKSGMVIEAPTSRDGIRSIGRPAAAL 81 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP--LPERTQQTLEHALLNAIAQFI 137 +G+ LG + + + D+S V+AE+ P L + QQ + A +AIAQ Sbjct: 82 TLNPTAGTCVGIHLGLQEMRLIVADVSHSVIAEQTIPMALDYQPQQAAQMAK-SAIAQSY 140 Query: 138 DSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV---EALEERFKVTCFVGH 194 + L+ + V + G V D + V W V + + F + Sbjct: 141 EENGLPAAGLLGVGVSVSGPVSRDGVVLRAS---IVPTWAGVNIRDVFGPVLERPIFADN 197 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 + A+AE +GA+ +D +L ++ G G I+ +GR+ G G GE GHI ++P G Sbjct: 198 ESNCSAIAELMWGAAIGQDDFVLFKIDLGVGGAIVQHGRLVTGIAGGAGEFGHISIDPGG 257 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 + C CGN GCLE A+ A R L + + + +V +DD + A +GD A + Sbjct: 258 DLCRCGNRGCLELYASFA----RPLEQISRIVRRQVTMDD-----VITMAEQGDIRALRM 308 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 IE G+ + + ++ NP I+I G + A +LL + + L R P + Sbjct: 309 IEDTAEIAGRGLGLIGSVLNPPLIIIGGHMALAGDILLTPLIASYERHTLIKSRDIAPAL 368 Query: 375 RSEL------DHRSAIGAFALVKR 392 R+ + + + +GA LV R Sbjct: 369 RTRITVGKHTQNDALLGAVGLVLR 392 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/386 (26%), Positives = 175/386 (45%), Gaps = 20/386 (5%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV-DQQASTGG 73 +++ N A V + GP+SR +A + L A+V+ + +LI GL++E+ ++ G Sbjct: 30 MRRRNLARVMHTVSAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELGPERPGRVG 89 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVL--AEEHYPLPERTQQTLEHALLN 131 R ++ R IG +G + DL +V A + R+ + + L + Sbjct: 90 RPGSALAVSGRGPAGIGAEVGVDHLAVCAVDLRGQVRSRAVRYGANRGRSPEPVIAELAS 149 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 ++Q + + + ++V +PGLV D + P++ + L L + +T Sbjct: 150 LVSQVVAEGEGEGLWPAGLAVAVPGLVARDVRTVVRAPNLDWHDTDLGALLPQDLPLT-- 207 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 VG++ ALAE + G D + V G GA ++ +G++ G G GE+GH+ V Sbjct: 208 VGNEANFGALAELWLGDGTP-HDFLHVSAEIGIGAALVVDGQLLRGTRGFAGELGHVPVH 266 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 P G RC CG GCLE A A+ L G + P +D + + + A GD Sbjct: 267 PDGPRCPCGGRGCLEQYAGEEAV------LRAAGLE---PGED-RVGLLAQHAADGDEAV 316 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + G+ LG + A+NL +P+ +V+ G + LLP++ + A + Sbjct: 317 RGALREAGQALGIALTGAVNLLDPEAVVLGGALAGLAPWLLPSLR---DELARRTAGPAC 373 Query: 372 PVVRSELDHRSA-IGAFALVKRAMLN 396 PV S L + +GA V RA+L+ Sbjct: 374 PVSVSGLGSQGPLLGAAHSVVRAVLD 399 >UniRef50_C0W6S3 Xylose operon repressor n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6S3_9ACTO Length = 379 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/359 (27%), Positives = 167/359 (46%), Gaps = 20/359 (5%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 S A+ LI GP+SR IA Q ++PAS+T +TR LIE G+++E AS+GGR A + Sbjct: 10 SDAIIGLIGTRGPLSRASIARQLGVSPASITHLTRSLIEEGVLREAGTDASSGGRPATLL 69 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDS 139 R +A+GV++ + +T +++ + L R+ L+ + A+AQ S Sbjct: 70 DLNDRRRYALGVKITPNHLAVTEVEMNKEQGPSTSLDLDMRSPGALDQ-ITQAVAQAARS 128 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSL 199 +Q EL+ + + +PG P I P + L + ER + + +D+ +L Sbjct: 129 HQ---DELMGVGLAIPGFSKPQDPDIVTAPILGWNQVDLGRLVRERTGLPVIIDNDVNAL 185 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 LA H + Q D +L+ + G GA S G+I G G GE+GH + C C Sbjct: 186 LLA-HRLYSPQPTGDDLLITIGIGIGAAFTSQGQIIHGGRGGAGELGHTMITESDVPCSC 244 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 G GCLE + + L++Q ++ + + A G+ A V + Sbjct: 245 GLSGCLEALIGDDG-------LVRQARKAGLLTATQGKDHLNALALSGNEAARSVFYHAA 297 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 LG+ A ++L +P + I+GE + + P E+ + FR+ LP+ R ++ Sbjct: 298 LLLGRAAANLVHLLDPDTVTISGEGVD----VWPLWEAGFS----HGFRSRLPIHRRDI 348 >UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobacterales RepID=C5RVI1_9THEO Length = 315 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 7/308 (2%) Query: 90 GVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHALLNAIAQFIDSYQRKLRELI 148 GV LG + L D ++ P + E+ + + + ++ + KL +L Sbjct: 7 GVDLGGTKISTGLVDEKGNIIRSTKIPTMAEKGPEEVIKRIEQSVYDVLKEAGLKLSDLK 66 Query: 149 AISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 + + PG +D G + P++ +N +V+ L + V + +D + A+ EH FG Sbjct: 67 GVGIGSPGPLDAKRGVVISPPNLPGWDNVPIVDILSHKLGVKVKLENDANAAAIGEHLFG 126 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A + ++ + + V G G G+I G+++ G N N EIGH + G RC+CGN+GC E Sbjct: 127 AGKGIDNFVYITVSTGIGGGVIIEGKLYSGENSNAAEIGHHTINFNGPRCNCGNYGCFEA 186 Query: 268 IAANAAIEQRVLNLLKQGYQS--RVPLDDCTIKT--ICKAANKGDSLASEVIEYVGRHLG 323 A+ AI + ++ G + R D +K+ + +AA GD A E+++ +LG Sbjct: 187 FASGTAIARFAQEGIQNGKDTMIRDLAKDGVVKSEHVFEAAKLGDEFAKELVDNEAFYLG 246 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL-DHRS 382 I+ + +NP+KI I G ++ +L + I +ALK VVR+EL ++ Sbjct: 247 VGISNIMAFYNPKKIAIGGGVSTQWDMLYDKMMETIKKKALKPNAEVCEVVRAELGENVG 306 Query: 383 AIGAFALV 390 +GA AL+ Sbjct: 307 VLGAAALL 314 >UniRef50_C6JE45 ROK family protein n=3 Tax=Clostridiales RepID=C6JE45_9FIRM Length = 377 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 136/265 (51%), Gaps = 9/265 (3%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +K++N + VY+ I + S++QI ++ Q+ ++V++ L + GLI++ STGGR Sbjct: 11 LKKINKSKVYQYIYRKKTTSKLQIVQELQMGLSTVSQNLNLLEQEGLIEKNGFFESTGGR 70 Query: 75 R--AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 + A+ IV++ + IG+ G IT DL + PLP + +A Sbjct: 71 KANALQIVSDFKISIGIGILKGMFH--ITAVDLYGNAFYTDTIPLPYSNTPDYYKQVTDA 128 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL-VEALEERFKVTCF 191 + +FI S Q +++ IS+ G+ PD + Y + N G+ ++ C+ Sbjct: 129 VKEFISSRQYDNDKVLGISIATQGITSPDHTTVLYGD--IMNNAGMKLDDFSRYLPYPCY 186 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 + HD +S A E + + + ++++ ++R G GII+N +I G + + G + H+ + Sbjct: 187 LEHDSKSAAFLELW--NHPELDSAVIILLNRNLGGGIITNHQIHQGISMHSGTLEHMCIN 244 Query: 252 PLGERCHCGNFGCLETIAANAAIEQ 276 P G C+CG+ GCLET + A+EQ Sbjct: 245 PDGPLCYCGSRGCLETYCSANALEQ 269 >UniRef50_C1XFK4 Transcriptional regulator/sugar kinase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XFK4_MEIRU Length = 290 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 104/210 (49%), Gaps = 13/210 (6%) Query: 155 PGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCE 213 PG + + G+I PH + N LVE L+ ++ HD A A F S E Sbjct: 52 PGPISFERGQILTPPHFPDLHNMYLVERLQRDLDRPTYLEHDS---AAAARRFLRSTSAE 108 Query: 214 DSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAA 273 + I + + +G GAGI+ +++ G +G GE+GH+ V GE C CGN GCLE +A A Sbjct: 109 NFIYILLQQGIGAGIVIKRQVYRGHHGFAGELGHMSVNMDGEPCPCGNRGCLENVAGTTA 168 Query: 274 IEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLF 333 IE R L L KQ + TI + A+ G+ A E GR LG +NLF Sbjct: 169 IEFRYLRLTKQ---------SLPLSTIAELAHAGNPQALLSFEQAGRALGWAAVNLVNLF 219 Query: 334 NPQKIVIAGEITEADKVLLPAIESCINTQA 363 +P+ +V+ G +L+P++ +NT A Sbjct: 220 DPELLVLGGPGAAYADLLIPSLRHHLNTHA 249 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 525 e-147 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 434 e-120 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 425 e-117 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 421 e-116 UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 419 e-116 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 417 e-115 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 415 e-114 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 412 e-113 UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU 408 e-112 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 407 e-112 UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 404 e-111 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 404 e-111 UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 400 e-110 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 394 e-108 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 392 e-107 UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acid... 392 e-107 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 391 e-107 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 387 e-106 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 386 e-106 UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n... 386 e-105 UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID... 383 e-105 UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D... 382 e-104 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 382 e-104 UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus ... 381 e-104 UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n... 380 e-104 UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 379 e-103 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 378 e-103 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 377 e-103 UniRef50_Q9K992 Transcriptional repressor of the xylose operon n... 377 e-103 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 375 e-102 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 375 e-102 UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp... 373 e-102 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 373 e-102 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 371 e-101 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 370 e-101 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 366 e-100 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 365 2e-99 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 361 2e-98 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 360 4e-98 UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterale... 359 1e-97 UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK... 359 1e-97 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 358 2e-97 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 358 2e-97 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 357 3e-97 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 355 1e-96 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 353 5e-96 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 352 2e-95 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 351 3e-95 UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N... 350 7e-95 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 349 9e-95 UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea b... 348 3e-94 UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR... 347 3e-94 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 346 9e-94 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 345 1e-93 UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=... 345 1e-93 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 345 3e-93 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 342 2e-92 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 342 2e-92 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 341 2e-92 UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix oreni... 340 6e-92 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 340 7e-92 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 339 1e-91 UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5R... 338 2e-91 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 337 4e-91 UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH 337 5e-91 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 336 1e-90 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 335 1e-90 UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida f... 335 2e-90 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 335 2e-90 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 335 2e-90 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 335 3e-90 UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=... 334 3e-90 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 334 3e-90 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 333 7e-90 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 333 1e-89 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 333 1e-89 UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytoferm... 332 1e-89 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 332 2e-89 UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n... 331 2e-89 UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metallir... 331 2e-89 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 331 2e-89 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 331 3e-89 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 331 3e-89 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 331 3e-89 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 331 4e-89 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 330 4e-89 UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=A... 327 4e-88 UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsul... 327 4e-88 UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Sa... 327 4e-88 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 326 7e-88 UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella for... 326 8e-88 UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostri... 326 9e-88 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 326 1e-87 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 325 1e-87 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 325 2e-87 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 325 2e-87 UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6L... 325 3e-87 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 325 3e-87 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 324 4e-87 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 324 5e-87 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 323 9e-87 UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminoc... 322 1e-86 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 322 1e-86 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 322 1e-86 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 322 1e-86 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 322 2e-86 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 321 2e-86 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 321 3e-86 UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiph... 321 3e-86 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 321 4e-86 UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n... 320 5e-86 UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus fae... 319 1e-85 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 319 1e-85 UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5E... 319 1e-85 UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostri... 318 2e-85 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 318 2e-85 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 318 2e-85 UniRef50_D2BD51 Transcriptional repressor of the xylose operon n... 318 3e-85 UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae... 317 4e-85 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 317 4e-85 UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID... 317 5e-85 UniRef50_B2V1I0 Putative transcriptional repressor of the xylose... 316 7e-85 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 316 8e-85 UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitan... 316 8e-85 UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bif... 316 1e-84 UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar... 315 1e-84 UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevi... 315 1e-84 UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterale... 315 2e-84 UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostrid... 314 3e-84 UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus Rep... 314 3e-84 UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS61... 314 4e-84 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 314 4e-84 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 314 5e-84 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 313 7e-84 UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=M... 313 8e-84 UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM... 313 8e-84 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 312 2e-83 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 312 2e-83 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 311 4e-83 UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile R... 311 4e-83 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 310 5e-83 UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=S... 310 5e-83 UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curviba... 310 5e-83 UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminoc... 310 6e-83 UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O... 310 6e-83 UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifi... 309 1e-82 UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B... 309 1e-82 UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostri... 309 1e-82 UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillu... 309 2e-82 UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 308 3e-82 UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=M... 308 3e-82 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 308 3e-82 UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiph... 308 3e-82 UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostri... 307 4e-82 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 307 5e-82 UniRef50_B2GIX7 Putative NagC family transcriptional regulator n... 307 6e-82 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 306 6e-82 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 306 6e-82 UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus monil... 306 8e-82 UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318... 306 9e-82 UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium ros... 305 1e-81 UniRef50_B2Q2V0 Putative uncharacterized protein n=1 Tax=Provide... 305 2e-81 UniRef50_D1NUM3 Transcriptional repressor in the Rok family prot... 305 2e-81 UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobact... 305 3e-81 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 304 5e-81 UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiph... 304 5e-81 UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidi... 303 6e-81 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 303 6e-81 UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacteriu... 303 7e-81 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 303 7e-81 UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulol... 303 8e-81 UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiph... 303 8e-81 UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enteroc... 303 9e-81 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 303 1e-80 UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostri... 303 1e-80 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 303 1e-80 UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavid... 302 1e-80 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 302 2e-80 UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM ... 302 2e-80 UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerot... 302 2e-80 UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacteriu... 302 2e-80 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 302 2e-80 UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 302 2e-80 UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia... 302 2e-80 UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetal... 301 2e-80 UniRef50_C0B3V0 Putative uncharacterized protein n=1 Tax=Proteus... 301 3e-80 UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp.... 301 3e-80 UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=... 301 3e-80 UniRef50_Q185Y3 Putative regulator of a specific sugar metabolis... 301 3e-80 UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=... 301 3e-80 UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Mic... 300 5e-80 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 300 6e-80 UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulol... 300 7e-80 UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp.... 299 1e-79 UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus ... 299 1e-79 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 299 1e-79 UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=C... 299 1e-79 UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepI... 298 2e-79 UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Re... 297 4e-79 UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridi... 297 5e-79 UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Mi... 296 7e-79 UniRef50_C4Z4E9 N-acetylglucosamine repressor n=1 Tax=Eubacteriu... 296 8e-79 UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobac... 296 8e-79 UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces R... 296 8e-79 UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5... 296 8e-79 UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID... 296 9e-79 UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 296 9e-79 UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium ... 296 1e-78 UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acid... 295 2e-78 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 295 3e-78 UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenen... 295 3e-78 UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=... 294 3e-78 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 294 4e-78 UniRef50_A5N1R7 Predicted transcriptional regulator n=2 Tax=Clos... 294 5e-78 UniRef50_A8F699 ROK family protein n=1 Tax=Thermotoga lettingae ... 293 7e-78 UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepI... 293 8e-78 UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium... 293 1e-77 UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C... 293 1e-77 UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp... 293 1e-77 UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiph... 292 1e-77 UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae A... 292 1e-77 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 292 2e-77 UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (N... 291 2e-77 UniRef50_B0NGA7 Putative uncharacterized protein n=3 Tax=Clostri... 291 2e-77 UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Strepto... 291 3e-77 UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipart... 291 4e-77 UniRef50_D1W4V6 ROK family protein n=2 Tax=Prevotella RepID=D1W4... 290 5e-77 UniRef50_D1NYQ4 Protein mlc n=3 Tax=Providencia RepID=D1NYQ4_9ENTR 290 6e-77 UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=... 290 6e-77 UniRef50_C6JJM8 Transcription regulator n=2 Tax=Fusobacterium Re... 290 7e-77 UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter Re... 290 7e-77 UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobact... 290 8e-77 UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5... 290 8e-77 UniRef50_A6NTH3 Putative uncharacterized protein n=1 Tax=Bactero... 290 9e-77 UniRef50_D2PPN2 ROK family protein n=1 Tax=Kribbella flavida DSM... 290 9e-77 UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=S... 289 1e-76 UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acn... 289 1e-76 UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces h... 288 2e-76 UniRef50_C2BT73 Transcriptional repressor n=1 Tax=Mobiluncus cur... 288 3e-76 UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c Rep... 288 3e-76 UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum D... 288 3e-76 UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenu... 288 4e-76 UniRef50_B2UXG9 ROK family protein n=4 Tax=Clostridium RepID=B2U... 287 4e-76 UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophil... 287 4e-76 UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=... 287 4e-76 UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1... 287 5e-76 UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella for... 287 6e-76 UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X... 286 9e-76 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 285 1e-75 UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID... 285 1e-75 Sequences not found previously or not previously below threshold: >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 406/406 (100%), Positives = 406/406 (100%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG Sbjct: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER Sbjct: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE Sbjct: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG Sbjct: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI Sbjct: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN Sbjct: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN Sbjct: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 229/405 (56%), Positives = 292/405 (72%), Gaps = 3/405 (0%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MT G QI NVDL+KQ+NSAAVYRLID GPISR++IAE SQLAPASVTKITRQLIE G Sbjct: 22 MTGG---QIANVDLIKQVNSAAVYRLIDLQGPISRVKIAELSQLAPASVTKITRQLIEHG 78 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 LIKE QASTGGRRAIS+ T F + +LGR + L+DL K L + + E Sbjct: 79 LIKETSPQASTGGRRAISLTTIKHRFQFVSAKLGRGYLQLALYDLDGKELDQHITQVTEI 138 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 QQ + LL I FIDS Q + R LI+I++ +PGLV+P+SG + Y P Q+ N L + Sbjct: 139 EQQPVVDMLLREIGAFIDSQQDRSRNLISIALTMPGLVNPESGMVIYTPKYQIRNLALAK 198 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 LE F + C+VG+D RSLALAEH+FG S+DC DSILV VH+G G+GII+ G++F+G+N Sbjct: 199 LLENHFNLPCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLGQNR 258 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 NVGEIGHIQVEPLG+RCHCGNFGCLETIA+N AI +V L+ +G+ S + TI+ + Sbjct: 259 NVGEIGHIQVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSSLQEKHITIQEV 318 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 CKAA GD LA VIE VG HLG+ +AI +NLFNPQK++IAGEIT A+++L PAI C+ Sbjct: 319 CKAAMAGDELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIRRCVE 378 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 Q+L +F LP+V++ ++ +G FALVKRA+L G LLQ ++E Sbjct: 379 HQSLPSFHRGLPIVKARFQNQPTVGGFALVKRALLEGDLLQIIME 423 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 175/402 (43%), Positives = 264/402 (65%), Gaps = 2/402 (0%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 AQ G++D +KQ+N+ VY+LID GPISRI ++++S+LAPAS+TKITR+LIE L+ E Sbjct: 33 MAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKITRELIEAHLVHET 92 Query: 66 DQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 Q + + GR A+ + + + +RLGR TI L +L +VL + + ER Q Sbjct: 93 TVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQDD 152 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + LL+ I +F +Y +L + +I++ LPGLV+ + G + MPH VEN L + + Sbjct: 153 VLARLLHEIEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVENLALGPEIYK 212 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + F+ +D R+ ALAE FG SQ E+S+L+ +H G GAGII +GR+ GR+GN+GE Sbjct: 213 ATGLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGNIGE 272 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIKTICKA 303 +GHIQ++P G+ CHCGN GCLET+A++ AI + V+ + G S + L+D TI++IC+A Sbjct: 273 LGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESICEA 332 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD+LA +VIE +GR+LG IAI INLFNP+K++I G I +A +VL PAI CI Q+ Sbjct: 333 AANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIEEQS 392 Query: 364 LKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 L + +L +V S ++ + AL+K+A+ +G+LL ++E Sbjct: 393 LPVYHQDLELVESRFYKQATMPGAALIKQALYDGLLLMKVVE 434 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 210/399 (52%), Gaps = 10/399 (2%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI-KEV 65 Q G+ + +K LN A+ +I GPISR +IA+ ++L P +V I +LI+ ++ +E Sbjct: 5 PQTGSFEGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMVIEET 64 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQT 124 + S GGR+ I + +++ IG+ R + L K+ L T+ Sbjct: 65 GESKSHGGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPPTKDE 124 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L N + + + + K +++ I V + GLVDP G + PH+ +EN + + LE Sbjct: 125 YIDLLKNGVEKVLQQKRIKQNKVLGIGVGMHGLVDPQKGISIFSPHLHIENIPIKQELES 184 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 F + V +D+R+LALAE ++G +D + + + V G G+GI+ NG I+ G+ + GE Sbjct: 185 AFDIPVLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQYHSAGE 244 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP------LDDCTIK 298 IGH V+ G RC CGN+GCLE A+ AI RV L+ G + + TI+ Sbjct: 245 IGHTVVDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKETDSQLTIE 304 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIES 357 + AA KGD+ EV+E GR LG +A IN+ P K+++ G I EA LL ++ Sbjct: 305 MVFDAAEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAGGNTLLSPLKE 364 Query: 358 CINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML 395 I +L+++ ++ +V S+L + IGAF LV + + Sbjct: 365 IIKKSSLRSYSDDVSIVTSDLGKKGMVIGAFTLVLKELY 403 >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 419 bits (1079), Expect = e-116, Method: Composition-based stats. Identities = 121/398 (30%), Positives = 200/398 (50%), Gaps = 7/398 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 Q G+ L+K LN + V +I + GPISR I++Q+ L P +VT I L++ GL+KE Sbjct: 3 QGMTGSFRLMKSLNRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVKEG 62 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQT 124 AS GGRR + + N + IGV +G + L +L++++L + LP Sbjct: 63 RTGASKGGRRPVLLSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIKAGE 122 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L + I + +++ I + + G+VD + G Y PH L E LE Sbjct: 123 FMTILYRLVDDMITNSDVSRDKIVGIGIGMHGIVDEEKGISIYAPHFDFGELPLKERLEA 182 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 R+++ V +D R A+AE +FG ++ + + + V G GAG+I NG+I G + GE Sbjct: 183 RYEIPVKVENDARCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQIHRGHHHIAGE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS-----RVPLDDCTIKT 299 +GH+ V+ G +C CG++GCL T+A+ I +R ++ + G + R +D + Sbjct: 243 LGHMIVDLNGRQCTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMRENKEDIDGEV 302 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 I +AA GD A E+ GR LG + IN NP +IV+ G + +A ++ + + Sbjct: 303 IYEAALHGDEFAEELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFVMKPLVETV 362 Query: 360 NTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLN 396 N +AL + S L H + +GA +L+ + Sbjct: 363 NRRALTDDARKTEITVSSLGSHSALLGAVSLILHDVFE 400 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 417 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 129/394 (32%), Positives = 210/394 (53%), Gaps = 8/394 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ L+K +N + + I GPISR IA++++L P +VT I +LIE L++E Sbjct: 5 GSFQLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEKLVRESKMGE 64 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHA 128 S GGR+ I + + +N IG+ +G + L DL+ +V + L T++TL Sbjct: 65 SRGGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGEVEGQTTVELSSDLTEETLIDQ 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L+ + + + ++I I + + G+VD SG + P+ Q+ N L E F V Sbjct: 125 LIKITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQLTNIDLKTPFESTFDV 184 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 FV +D R+LAL E +FG Q + I V V G GAGI+ N R+F G +G GEIGH Sbjct: 185 PVFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIAGEIGHT 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICK 302 V+ G++C CGN+GCL+T+A +++R ++ + G ++ + +D + + I + Sbjct: 245 TVDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRISGEIIHQ 304 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A GD L+ E++E G++LG I IN NP +I++ G +++A +L + + + Sbjct: 305 CALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVLEPLRKMVKER 364 Query: 363 ALKAFRTNLPVVRSELD-HRSAIGAFALVKRAML 395 AL A VV +EL +AIGA LV + Sbjct: 365 ALTAKARETEVVTAELGEWGTAIGAVTLVLEDLF 398 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 121/399 (30%), Positives = 197/399 (49%), Gaps = 9/399 (2%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 +L++ +N V RL+ G +SR +AE++ L +V+ + +L+E G ++E+ S+ Sbjct: 5 PELIRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGESS 64 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GGR I + R IG LG L DL+ V + R L Sbjct: 65 GGRPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFKQRVESRDPLIEVDQLER 124 Query: 132 AIAQFIDSYQR--KLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 A+ +D R + + + + G++DP+ G Y PH QV + + L+ER + Sbjct: 125 AVRYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHYQVRDLPVAPMLQERLSLP 184 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 ++ +D R++A E FGA+Q ++ +RV G GAGII +GR++ G + GEIGHI Sbjct: 185 VWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGEIGHIM 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKA 303 V+ G RC CG+ GCLET+ + AI +R + + QG ++ + T+ +A Sbjct: 245 VKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIATTVIEA 304 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A+ GD +A E++ GR LG I INL NP ++I G + A L+ + + Sbjct: 305 ADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAGDYLIEPLRQAALERT 364 Query: 364 LKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGILLQ 401 L A R + +VR+EL + +G ALV + L+ Sbjct: 365 LPALRERVKIVRTELGEDAGPLGGAALVIEELFRTPTLK 403 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 117/399 (29%), Positives = 203/399 (50%), Gaps = 4/399 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + +IGN +L+K +N + V I GPISR I++ L ++VT I +L + L+ EV Sbjct: 2 KLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHEV 61 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQT 124 + STGGR+ I + + IG+++ ++ L +L S+++ + P + T T Sbjct: 62 GEADSTGGRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSNT 121 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + + ++ I + I + L+ I V + GLVD GK+ Y + N + LE Sbjct: 122 VLNMVVENIEKLITKIPYN-KNLMGIGVAVSGLVDQQKGKLIYSGMLNWSNVEIGNILEN 180 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 +F V ++ +D+ + LAE ++G ++ + I+V G G+GI+ N +++ G G GE Sbjct: 181 KFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGE 240 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL-DDCTIKTICKA 303 IGH+ + G +C CG GCLE A+ I + + +K +S++ L +D +I+ + + Sbjct: 241 IGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEY 300 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A +GD LA +V+ ++LG + INL NP I++AGE A ++LP I + Sbjct: 301 AKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNF 360 Query: 364 LKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNGILLQ 401 K + + SEL IGA L + L + Sbjct: 361 FKMHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPLYE 399 >UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU Length = 384 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 198/393 (50%), Gaps = 12/393 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I + VK++N + + I + PISR +++E + L ++V+ L++ ++ E+ Q Sbjct: 3 IADQTFVKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTLMKESMVFEIGQG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGRR + +V + +++G+ +G L DL ++ +++ L + + + Sbjct: 63 QSSGGRRPVMLVFNKKAGYSVGIDVGVDYINGILTDLEGTIVLDQYRHLESNSPEITKDI 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L++ I FI + LI I + +PGL+D D KI + P+ + L +++E++ V Sbjct: 123 LIDMIHHFITQMPQSPYGLIGIGICVPGLIDKDQ-KIVFTPNSNWRDIDLKSSIQEKYNV 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ + A E FGA+++ ++ I V + G G G+I N ++ G +G GE+GH+ Sbjct: 182 PVFIENEANAGAYGEKVFGAAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGHM 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++ G +C CGN GC E A+ A+ + + + + + I A+ D Sbjct: 242 TIDFNGPKCSCGNRGCWELYASEKALLKSL----------QTKEKKLSYQDIINLAHLND 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 ++ G +LG + +N FNPQ +++ I E+ ++L ++ S ++++ Sbjct: 292 IGTLNALQNFGFYLGIGLTNILNTFNPQAVILRNSIIESHPMVLNSMRSEVSSRVYSQLG 351 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILL 400 + ++ S L + A+G ++V L+ I + Sbjct: 352 NSYELLPSSLGQNAPALGMSSIVIDHFLDMITM 384 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 118/394 (29%), Positives = 201/394 (51%), Gaps = 8/394 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q G L+K +N + + I PISR +IA+++++ P +V+ I ++LI +GL+KE Sbjct: 2 QRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTL 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLE 126 S+GGR+ + T ++ IG+ G L DL+ +L L + T + Sbjct: 62 GRSSGGRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERFM 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 L ++ + + ++I I + + G+VD ++G P + + N + + LE+ F Sbjct: 122 EVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPILNLTNIPIKDVLEQEF 181 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 +T V +D R++AL E +FG D V + RG GAGI+ NG+++ G G GE+G Sbjct: 182 NLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGELG 241 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ ++ GE+C CGN GCL+TI + AI +R LK+ D T K + + A Sbjct: 242 HMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKE------STDSLTAKDLFEMAEN 295 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 G E+ + G +G + I+L NP KIV+ G + + + +LPAI I +AL A Sbjct: 296 GCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQKALTA 355 Query: 367 FRTNLPVVRSELDHRSAI-GAFALVKRAMLNGIL 399 V ++L + + GA +L+ + + +L Sbjct: 356 EARQTEVTITKLGDEATLYGAVSLLLAELFDPVL 389 >UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T9_PAESJ Length = 387 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 105/388 (27%), Positives = 194/388 (50%), Gaps = 13/388 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 G++ L+K++N++ V + + P+SR QI+E + L A+V+ + + LI+ L+ E+ Sbjct: 6 TGDLTLIKKINTSIVLEAVLKQAPLSRAQISELTGLNKATVSNLVQDLIDSDLVVEIGPG 65 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGR+ + ++ + +A+G+ LG + L DL V+AE L + + Sbjct: 66 ESSGGRKPVMLLFNGKAGYAVGIDLGVNYIRGVLADLEGNVIAERKRSLKKHQLEFTLKE 125 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L+ I + I ++ I + +PG+VD D G I + P+++ + L + LEE+F++ Sbjct: 126 LVQCIEELIGKAPASPYGIVGIGIGVPGIVD-DQGSILFAPNLEWRHVELQQMLEEQFQL 184 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ + A E +G + I V V G G GII N ++ G G GE+GH+ Sbjct: 185 PVTIDNEANAGAQGEQKYGIGRGIAHQIYVSVGIGIGTGIILNKELYKGATGFSGELGHL 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 +E G+ C CGN GC E A+ A+ ++ PL +++ + AA G+ Sbjct: 245 SIEYNGKPCRCGNEGCWELYASENALLEQAA-----------PLGFDSLEDLLDAAEAGN 293 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 + +G ++G I+ +N+FNP ++I ++ A L A++S + + L R Sbjct: 294 EEVRALFYKIGEYMGAGISNIVNVFNPDVVIIGNRMSRAKTWLEEAVQSSVTRRTLPYHR 353 Query: 369 TNLPVVRSELDHRSAI-GAFALVKRAML 395 L ++ +EL +SA+ GA Sbjct: 354 ERLRILFAELQDQSAVRGAAYYAISKFF 381 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 176/395 (44%), Positives = 263/395 (66%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I +VD +KQLNSA +Y++I++Y PISR++IA S+LAPASVTKITRQL+++G+I E +Q Sbjct: 12 IASVDHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLLQQGIICETARQ 71 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 ASTGGR AIS+ T N H + +++G+ +++ ++L+++ L + + +Q L Sbjct: 72 ASTGGRCAISLAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQLTTKKIKIKSEDEQQLLAF 131 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L++ I FI Q+ + ++ AI++ L GL++P G + Y P+ + N+ L +E+ F++ Sbjct: 132 LISEIDNFIKKQQKNMGKISAIAISLSGLINPKKGVVLYSPYHPLVNFPLANKIEQHFQL 191 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+G+ RSLALAEHYFGAS++C DSIL+ +H G G+GII G+ +G+N N+GEIGHI Sbjct: 192 PTFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIEGKALLGQNFNIGEIGHI 251 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 Q P G +CHCGNFGCLET ++ I ++V +KQG +R+ LD I+ I +AA D Sbjct: 252 QANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIKQGSFTRLSLDSLNIEKIYQAAEDND 311 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 L +++E +LGK IAI INL NPQKI+IAG+I A LL IE CI Q L F+ Sbjct: 312 PLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTSLLSTIEQCIAHQVLPNFQ 371 Query: 369 TNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHL 403 + + S L+ + + AFAL+K+A+ G LLQ + Sbjct: 372 HKVQIETSLLEPDTTLAAFALIKQAIYEGDLLQQI 406 >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 115/391 (29%), Positives = 190/391 (48%), Gaps = 10/391 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + +V N AV I PI R +IA + L+ +V KIT + E GLI E ++ S Sbjct: 5 DKSIVGIHNKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYESGKRTS 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHAL 129 G+ + + IGV +G L DLS+K+L E P T + Sbjct: 65 EVGKPPKLLSFVPDAKYIIGVDVGTTHVGAVLMDLSAKILLREWAPTHDGHTFPQVLEQT 124 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + I + +D+ +++ I V +PGL+ ++GKI P I + L+ERF++ Sbjct: 125 IQCIQKILDASSEYAGKILGIGVGVPGLISVETGKIILSPAIGWHEGNFLAPLKERFRLP 184 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V + +R++A+ E +FGA + E+ + + G G+ I+ +I+ G G GE GH+ Sbjct: 185 VVVDNVVRAMAMGELWFGAGRGLENFFCIGLGYGIGSSIVIGKQIYSGSTGTSGEFGHMT 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKA 303 ++ G C CG +GCLE IA+ AI ++ + G S + L+D K + A Sbjct: 245 IDKSGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAKVVFDA 304 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GDSLA+ ++ V +LG I+ INL +PQ I++ G +++A LL + ++ Sbjct: 305 AKAGDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDEVSRHV 364 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 L + +V S L + AIGA + + Sbjct: 365 LPVKEPH--IVISSLGEDAVAIGAATFLLKE 393 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 118/392 (30%), Positives = 200/392 (51%), Gaps = 10/392 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + L K +N + +I + GPISR I++++ L P +VT + +L+E L+ E S Sbjct: 8 SYKLQKGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVLEDIMGES 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 +GGR + F+ + + + T L D KV + Y + +Q + + Sbjct: 68 SGGRPPQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVYDIERLEKQKILDLMF 127 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 I + I S +E+ A+ V++ G V G + P+I N + + ++ERFK Sbjct: 128 EVIDELIKSAS---QEVPALGVVVHGPVKAREGVSVFAPNIGWRNVPIKKLVQERFKKPV 184 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V +D+R++ L E Y+G+ + ++ + +++ G G+ II +G+IF G + + GE GH V Sbjct: 185 CVENDVRAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDSAGEFGHTTV 244 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAA 304 + G RC+CGN+GCLE +++ AI + V+ LK G S V L+ T + +AA Sbjct: 245 DIGGPRCNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKVTPDHVYRAA 304 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 ++GD L+ V++ R+LG IA IN NP+ IVI G I +A + I + +AL Sbjct: 305 DRGDELSLSVLQEAARYLGIGIANIINSINPKVIVIGGGIIKARLHIEEIINKSVEERAL 364 Query: 365 KAFRTNLPVVRSELDHRSAI-GAFALVKRAML 395 + +V SEL + GA +V +L Sbjct: 365 TNAYQSCDIVFSELGDIGTLKGAGNIVMDEIL 396 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 99/390 (25%), Positives = 198/390 (50%), Gaps = 11/390 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 ++GN +K LN +++LI + GPI+R ++A+ + + +++ + LI++G + E Sbjct: 2 NVKVGNSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIET 61 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ-T 124 ++ S+GGR+ + + + I V + I LF+L KV+A+ +P+ Q Sbjct: 62 EKGYSSGGRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVAKTVFPINGPAQAKE 121 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + + I + + + K +++ I V +PGL+D + G + + P++ +V+ E+ Sbjct: 122 TISQIFSEIEKILSEREIKPDKILGIGVAVPGLIDKEEGLLEFAPNLGWSKVPIVKYFED 181 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 ++ V + ++ + A+ E F D +D + V ++ G G G+I NGR++ G GN GE Sbjct: 182 KYGVPVVLENEANAAAVGEKEF-VYPDIKDMVYVSINEGIGCGLIFNGRLYRGAGGNAGE 240 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GHI ++ G CHCGN GC ET+A+ I++ L + ++ I + A Sbjct: 241 FGHIIIDSDGPLCHCGNSGCWETLASENHIQKEYQELTGE--------ENVEKNEIYRKA 292 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +G+ A V++ ++G +A +N +P+ IV+ G I EAD +++ ++S + + L Sbjct: 293 IEGEDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGGGIIEADTLIIDTVQSILKEKCL 352 Query: 365 KAFRTNLPVVRSELDHRSAI-GAFALVKRA 393 + + + L + + G + V Sbjct: 353 LLSYDKVDIEFTRLKDLACLYGLASYVFNK 382 >UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP1_ALIAD Length = 409 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 110/392 (28%), Positives = 179/392 (45%), Gaps = 11/392 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + + L+K++N + V I + PISR QI+ ++ L A+V+ +T +LI GL+ EV Q Sbjct: 14 KTADQALMKEINKSIVLNRIRFHSPISRSQISSETGLNKATVSALTDELIRDGLVLEVGQ 73 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLE 126 S GRR I ++ IGV LG + + D +++ L+ PLP + + Sbjct: 74 GRSRVGRRPIMLLFNASAGSVIGVELGVEYVRVAITDFAARALSVREEPLPRNLGAEEVL 133 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 L +IAQ + +I I V +PGLVD G + PHI+ EN L +E F Sbjct: 134 ERLRASIAQALAEAPESRYGVIGIGVGVPGLVDFARGVVLRAPHIKWENIPLKAMMESWF 193 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V ++ + AL E +GA+ + + G G GI+ + G +G GE G Sbjct: 194 GKPVLVDNEANAGALGEKLYGAATHVSSLVYISAGTGIGTGIVIGDELIRGADGVAGEFG 253 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ ++ GE C CGN GC E A+ A+ L ++ + Sbjct: 254 HMSIDLHGETCPCGNVGCWELYASERALVAAYAKL---------TGEELDFDGVLARFRA 304 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 D A + + VGR+LG +N NP +++ + E +++ A++ I ++ L + Sbjct: 305 SDPAALQAFQTVGRYLGAGAVNLVNGLNPAMMILGNRLAEGGRMVTDAMQQAILSRCLVS 364 Query: 367 FRTNLPVVRSELDHRS-AIGAFALVKRAMLNG 397 + V S L + AIG+ ALV G Sbjct: 365 SYAKVVVQVSALGRDACAIGSAALVLHDFFAG 396 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 113/399 (28%), Positives = 197/399 (49%), Gaps = 9/399 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 ++GN+ LVK+LN ++ +I ++ ISR Q+A+ + L PA++T I R L+ G + E Sbjct: 4 EVGNLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKGL 63 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S GGRR + + + + +G + R+ T+ + +L +K L + Y + Q Sbjct: 64 GKSNGGRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQYNIDMTDPQQGLS 123 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ--VENWGLVEALEER 185 L + + + I + + ++ + V PGLVD + + P++ + + L+E Sbjct: 124 RLADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRDIPIENWLQEM 183 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + FV ++ + A+AE+ FG ++ ++ + + G AGII NG + G G GEI Sbjct: 184 TGIKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRGYTGEI 243 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR------VPLDDCTIKT 299 GH+ ++ G C+CGN GCLE++ A A+ ++ N L Q + + I+ Sbjct: 244 GHLVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSLYNQKDPLKAIWLEKGEVKIED 303 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 I AN S A ++I G ++GK IA IN+FNP+ I I G + EA LL + + Sbjct: 304 IMANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLDPLIESV 363 Query: 360 NTQALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNG 397 A + + S + + GA A+ RA+ G Sbjct: 364 QKHAFPELVREVRIELSSMRKDTGFYGACAIAIRALFEG 402 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 110/404 (27%), Positives = 203/404 (50%), Gaps = 15/404 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N+ ++ N + V I + GPISR I++ ++L+P++V+ I LI G++KE Sbjct: 2 KPVNIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLINVGIVKETPA 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 + + GRR I + ++ IG+ + + T L LS K+L + L + Sbjct: 62 KVTKVGRRPIELTLNETGYYPIGIEIEKDKITGILMALSGKILKSKVINLNTTDVNEVLG 121 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF- 186 +++N I+ + E+I + V +PG ++ G + P++ N + E L + Sbjct: 122 SVVNVYRSLIEDVNK--EEIIGVGVAVPGTINRKEGVCIFSPNLGWRNINIKEYLGQYIK 179 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 F+ H I+++ E ++GA ++ I VRV G AG + +G+++ G N GE G Sbjct: 180 DYPLFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRGPNDRAGEFG 239 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT----IKTICK 302 H +E G++C CG++GCLET + + ++V +++ ++V +++ T + I + Sbjct: 240 HTVIERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKNAYTKVNIENKTKDEILDEIIE 299 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A GD + E +G +LG IA INLFNP+ I+IAG +++A ++LL + +N Sbjct: 300 AGKSGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLLEPVRRIVNLH 359 Query: 363 ALKAFRTNLPVVRSELDH-RSAIGAFALVKRAMLNGILLQHLLE 405 A ++ ++L IGA + V LL+ + E Sbjct: 360 AFPPI---PEIMVTKLGALTGPIGAASEVIEE----TLLKKIFE 396 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 109/389 (28%), Positives = 191/389 (49%), Gaps = 10/389 (2%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 G+ L+K++N V I Q P+SR I+ L A+V+ + +LI+ L+ E+ Sbjct: 4 TGDQQLIKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEIGPG 63 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGR+ ++ +AIG+ + +D L DL VL E+ PL + + + + Sbjct: 64 ESSGGRKPTLLLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQEKLVPLSDFSPEHVLEQ 123 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + I QF + ++ I + +PGLVD D ++ P++ L E L F Sbjct: 124 IRQTIRQFKEQLPESPYGIVGIGIGVPGLVD-DKSRVISAPNLDWNKVELYEPLASEFGA 182 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ + A+ E FGA ++ ++ I + + G G+GII G ++ G + GE+GH+ Sbjct: 183 NLHIDNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYRGTSNFSGEVGHM 242 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G C CGN GC ET+A+ A+ R L + ++ + + A+ GD Sbjct: 243 TIAENGPLCRCGNRGCWETLASEKALLDRAAKLWGDKHP--------DLEEMIQLAHSGD 294 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 S A E++ +G LG +A +N+ NP+ IVI ++ A ++ A+ I ++L R Sbjct: 295 SRAIELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDAMLRTIENRSLSYHR 354 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLN 396 V + L RS A+GA ++ A L+ Sbjct: 355 KKSGVAFANLGIRSTALGAASMPITAFLS 383 >UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKJ0_BACSK Length = 391 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 104/387 (26%), Positives = 176/387 (45%), Gaps = 10/387 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + + +K +N + V+RLI ++ PISR IA++S L A+V+ + QLIE + E+ S Sbjct: 5 DHETMKDMNKSTVFRLIQRHAPISRADIAKRSGLNKATVSALVAQLIENQFVYEIGTGDS 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 +GGR+ + + R HAI V +G + + DLS K +A+ L + + Sbjct: 65 SGGRKPVLLYCNDRASHAISVDIGVNGLLGIITDLSGKTIAKREMALTSKEFNIVLANTE 124 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 I Q I + I+ +PG+VD G I P++ EN + ALE FK+ Sbjct: 125 AIIEQLIHEAPPSPYGICGITASVPGIVDS-KGNILLAPNLGWENVDIKTALEHTFKLPV 183 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V ++ + AL E +G + + V G G G I +G++F G NG GE GH+ + Sbjct: 184 VVINEANAGALGEKQYGVGKPYSAISYISVSIGIGTGQIIDGKLFTGANGFAGEFGHMSI 243 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 + G++C CGN GC E ++ A+ + + + + + AA G+ Sbjct: 244 DRHGKQCRCGNQGCWELYSSEKALLEIAAI--------NMNRRSISFEEVLAAAETGNQA 295 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 A + VG LG + I+ NP+ I+I + + IE + ++ Sbjct: 296 ALDAFATVGHSLGIGLVSMIHSMNPEAIIIGNRFAKLKPYIQIPIEETLAKHLPSYYQKA 355 Query: 371 LPVVRSELDHRS-AIGAFALVKRAMLN 396 + ++ SEL + +G L N Sbjct: 356 VKLLFSELGQEAPLLGGSLLATSQFFN 382 >UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID=A8FE34_BACP2 Length = 386 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 107/393 (27%), Positives = 191/393 (48%), Gaps = 12/393 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I + + VK++N + + I Q+ PISR +++E++ L ++V+ L++ L+ E+ Q Sbjct: 3 IADQNFVKKINQKLLLKEILQHAPISRAKLSERTGLNKSTVSSQVSTLMKEQLVYEIGQG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGRR + ++ R +IG+ +G L DL +L EE LP Sbjct: 63 ESSGGRRPVLLMFNKRAGCSIGIDVGVDYVNGILTDLEGSILHEEQINLPSSAPDVTIRI 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L I Q + LI I + +PGLVD D + + PH + +N L +AL++ F+V Sbjct: 123 LTELIQQLMSQIPSSPYGLIGIGLCIPGLVDADQQIV-FTPHSKWKNVDLKKALQDAFQV 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ + A E FGA++ + I + G G GII N ++ G G GE+GH+ Sbjct: 182 PVFIENEANAGAYGEKIFGAAKHYDHLIYASIGTGIGIGIIINHHLYRGAYGFSGEMGHM 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++ G C CGN GC E A+ A+ Q + + + + + + A D Sbjct: 242 TIDFNGPTCSCGNRGCWELYASEKALFQSL----------QTNEKPISHQDVEQLATLND 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 + G +LG + ++ FNPQ I++ ++ E+ +L I+ ++++ F Sbjct: 292 MKTLNALRNFGFYLGVGLTNVLHTFNPQAIILRNKVIESQPTVLRVIQEEVSSRIDTQFS 351 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILL 400 +++ ++ S L H + +G +LV A L L Sbjct: 352 SHVELLPSSLGHNAPVLGMTSLVIEAFLQDATL 384 >UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D498_GEOSW Length = 397 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 109/399 (27%), Positives = 202/399 (50%), Gaps = 8/399 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + GN+ LVK++N V +LI + ISR +IA+ + L A+V+ + +LI + E Sbjct: 1 MVRTGNIGLVKKINKQIVLKLIREKNNISRAEIAKITGLNKATVSALVDELISEHFVSES 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQT 124 STGGRR + + IG+ LG + L DL+++++ E+ P Q+T Sbjct: 61 GIGVSTGGRRPLMLRFNEAAGSLIGIELGVNYIYAVLTDLNAEIIWEKMCPFRANEKQET 120 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + ++ I + I ++ I + +PG+VD + G + + P++ ++ L L++ Sbjct: 121 IIEKMIAMIHEAIRQAPTTPYGIMGIGIGVPGIVDAEEGLVVFAPNLHWDHVSLSSILQK 180 Query: 185 RF-KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 ++ + ++ + AL E +FGA ++ + + V G GAG+I + +++ G +G G Sbjct: 181 QWPNYPIIIENEAKLAALGEKWFGAGKEFANFVYVSAGIGIGAGVIIHNQLYRGIDGIAG 240 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 EIGH ++ G RC CGN GC E A+ I++R L ++ Y S L+ +++ + Sbjct: 241 EIGHHVIDVHGFRCSCGNNGCWEMYASEKYIQRR---LEQEHYHSM--LEGFSVEKVRAL 295 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD ++++ VG +LG I I +NP+ +++ I +A K +L + + Sbjct: 296 AESGDKQMAQILAEVGHYLGIGILHIIYAYNPEAVIVGSTIGKAGKWVLEPAREEVEKRI 355 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQ 401 L ++ S+L +S AIGA A V ++ L+ Sbjct: 356 LVKNGNGPFIIPSQLLEKSCAIGAVASVLEKVVMPSELE 394 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 105/397 (26%), Positives = 185/397 (46%), Gaps = 10/397 (2%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 N VK+ N V LI ++GPI R ++A+ + L P ++T I R+L+E GL+ E Sbjct: 5 GANSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIRELLELGLVHEDGYG 64 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S GGRR + + ++ + IGV + R + T+ + DL + YPL + Sbjct: 65 ESRGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARYPLDMSEPAAGLAS 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ--VENWGLVEALEERF 186 L + + ++ ++ R + + + PGLV +G + ++ ++ L E LE+ Sbjct: 125 LAELLRRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKLEDVL 184 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + F+ ++ + LAE +FG C D + V + G AG+I + RI G G GEIG Sbjct: 185 GLPVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYAGEIG 244 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLL------KQGYQSRVPLDDCTIKTI 300 HI ++ G +C+CGN GCLE + + A+ ++ L D + + Sbjct: 245 HIVIDESGPQCNCGNHGCLEALCSVPALIKQARRDLPGLADGDPLKARWQSSGDIELADL 304 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 A G + A+ ++ +G+ +A INL+NP+ + + G++ A P + + Sbjct: 305 LAVAQPG-TYANALLSRAVHWIGRAVAAVINLYNPEAVFLGGQLAGAMARFEPILRDAVA 363 Query: 361 TQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAMLN 396 A + + S L IGA AL + +L+ Sbjct: 364 AHAFPEIASATRIAFSALGEYPGVIGACALALKGLLH 400 >UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus licheniformis RepID=Q65DK2_BACLD Length = 387 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 106/389 (27%), Positives = 182/389 (46%), Gaps = 12/389 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 + LVK++N A ++ I + GP+SR +++E + L A+V+ L+++ +I E Sbjct: 3 TADQALVKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSLLQKDIIYETGPG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGRR + + + +A+GV +G + + L DL ++ + L E Q E A Sbjct: 63 ESSGGRRPVMLKFNRKAGYAVGVDVGTNYIIVALTDLEGHLIEQFERTLDEEDIQATEEA 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L+ +D L I V +PGLVD + + + P+ + + E LEERF V Sbjct: 123 LIELTGLAVDKIPPSPFGLTGIGVCVPGLVDNER-HVVFTPNKPIHLIPIKEKLEERFGV 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ + A+ E +G E ++ V ++ G G GI+ NG++F G G GE GH+ Sbjct: 182 PILIENEANAGAVGEKEYGEGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEAGHM 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G C CGN GC E A+ A+ +T+ + A++GD Sbjct: 242 SIHFDGPLCRCGNRGCWELYASEKAVFSHYAA----------NSGAQLYETVKELADRGD 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 E E G H+G + + NP I++ I E+ ++ AI+ I +++ Sbjct: 292 PGMMETFERFGFHIGIGLLNILKTLNPDTIILRNTIVESYPSIVDAIKKTIASRSAAEAL 351 Query: 369 TNLPVVRSELDH-RSAIGAFALVKRAMLN 396 +N + S L SA+G +LV L Sbjct: 352 SNYHLKISTLGRTASALGMSSLVTERFLE 380 >UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n=3 Tax=Bacillaceae RepID=Q8ELU2_OCEIH Length = 400 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 112/390 (28%), Positives = 189/390 (48%), Gaps = 7/390 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N +VKQ N + V+ I Q PISR IA+Q L ++V+ + +LI LI EV Sbjct: 5 RTWNQYVVKQENKSLVFNTIRQNSPISRADIAQQLGLNKSTVSSLVSELINEELIGEVGP 64 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S+GGRR + + ++IG+ LG + L DL +L +E T + + Sbjct: 65 GESSGGRRPVMLFFNNTAGYSIGIDLGVNYILGVLTDLQGNILEQEQVTFDNLTYEEILV 124 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L I + I + +I I V +PG+V+ + KI P++ N L E LE +F Sbjct: 125 HLNEVIQKLITMTSKSPYGVIGIGVAVPGIVNKEE-KILLAPNLNWRNISLKEELENQFN 183 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + + ++ + A E FG ++ ++ + V V G G G++ N +++ G NG GE+GH Sbjct: 184 IPVIIENEANAGAYGEVQFGIGKENKEIVYVSVGVGIGVGLVLNNQLYKGNNGFSGEMGH 243 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 + ++ G +C CG+ GC E A+ A+ Q + + P D + + A Sbjct: 244 MTIDAHGAKCSCGSEGCWELYASEKALLQLAK---RNKIYTTDPYDLLD--HMIQLAKNN 298 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 DS+A E + ++L I IN FNP++++I ++ A K + + IN Q+L Sbjct: 299 DSVALEAFNEISKYLAIGINNIINSFNPEQVIIGNRMSAAKKWIEKPLLDSINNQSLWFS 358 Query: 368 RTNLPVVRSELD-HRSAIGAFALVKRAMLN 396 + +L + S L+ H +A+G A L Sbjct: 359 QKDLKIDFSSLNTHSNALGMAAFSSERFLK 388 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 162/403 (40%), Positives = 252/403 (62%), Gaps = 2/403 (0%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + Q G++D +KQ N+ AVYRLIDQ GP+SRI ++ +QLAPAS+TKI R+++E L++E Sbjct: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 Query: 65 VD-QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 ++ ++A GR A+ +V ET +H + +R+ R + + L DLSSK++ EE L + Sbjct: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 L +++ I QF +Q+KL L +I++ LPG++D ++G +H MP V+ L EAL Sbjct: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E+ V ++ HDI + +AE FGAS+ D I V + GAG+I++G + + ++ Sbjct: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 EIGH QV+P G+RC+CGN GCLETIA+ +I + L Q S + T+ ++C+ Sbjct: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA +GD LA ++I VG H+G+ +AI +NLFNPQKI+I +++A +L P I I Q Sbjct: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 Query: 363 ALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 AL A+ ++ V ++ ++ + ALVK AM NG LL LL+ Sbjct: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 195/395 (49%), Gaps = 3/395 (0%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + GN L+K++N ++ LI +S+ +A+ + L+P + I L+++G I+ Sbjct: 1 MRMGKAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIR 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 E S GGRR I ++ +IGV + L D++ +V ++ R Sbjct: 61 EAGIGTSKGGRRPILYELTPGSYFSIGVDIDIDYIRFILMDITGQVEFKDRISCDFARAA 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + I++ I + + L+ + V +PG++D + +I + P++ E L + Sbjct: 121 SESIRLMEEKISEIIKIHNIEHDRLLGVGVSVPGMIDNLTHEIIFAPNLGWERVNLEHMM 180 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + +V ++ AL E++ G D D + + + G G+ I + G ++ G G+ Sbjct: 181 DRIGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRGCCGSA 240 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIKTIC 301 GEIGHI V+ G RC CGN+GCLE + + ++ ++ L++QG + ++ T+ I Sbjct: 241 GEIGHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAITVDEIF 300 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + A +G+ A ++ +LG IA IN NP KIV+ E+ + + ++ ++S + Sbjct: 301 RLAREGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSEDIVDHLKSIASA 360 Query: 362 QALKAFRTNLPVVRSELDHR-SAIGAFALVKRAML 395 +ALK + + VV S++ SA+GA + + + Sbjct: 361 KALKYPASRVQVVVSKIGEDTSALGAAIIPVKKLF 395 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 103/383 (26%), Positives = 183/383 (47%), Gaps = 8/383 (2%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +K++N + LI+ GPISR +IAE + L PA+V+ I + L++ L++E Q S GGR Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDLLKMDLVRETRQGESRGGR 60 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 + I + + IG+ G + L +L+ KV+ + + + I Sbjct: 61 KPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIKKQVDSFKPEWFLKTTV-TIF 119 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 + + Y ++ + + + GLVDPD G Y PH EN + + L++ ++ + + Sbjct: 120 EEVTGYVENPDKVFGLGIGIHGLVDPDEGVSLYAPHFGWENIKIGKLLKQELQIPIMLDN 179 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 D+R +ALAE + + ++ I + G G+ I+ G + GR+ GE GH+ + G Sbjct: 180 DVRMMALAEKW----EGRDNFIFINTGPGIGSAIVIKGELLYGRDFGAGEFGHMTIVEDG 235 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CGN GC+E + + + + + L + + + + A + S A + Sbjct: 236 ALCSCGNRGCIEALVSVNNLVREYNDSLPEHISFHDIKREWNL--LIDLAREEKSRAYSI 293 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 IE G +LGK I +NL NP+ +VI G+ A ++ P I+ + ALK +L + Sbjct: 294 IEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIFPVIKEQVLETALKVPSRDLEIT 353 Query: 375 RSELDHR-SAIGAFALVKRAMLN 396 + + AIGA V + + Sbjct: 354 GTAFGEKVGAIGAGTRVLQEIFK 376 >UniRef50_Q9K992 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9K992_BACHD Length = 386 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 101/392 (25%), Positives = 193/392 (49%), Gaps = 11/392 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + G+ +KQ+N V + I + P+SR Q++ + L +V+ + +LI L+ EV Sbjct: 1 MSVTGDQRFIKQMNKQIVLQTIRKEAPLSRAQVSLTTGLNKGTVSSLVAELIADNLVYEV 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 S+GGRR + ++ + + +AIG+ + + + L DL V+ + + L + + Sbjct: 61 GPGESSGGRRPVMLMFQNKAAYAIGINIAVNYLSGVLTDLVGNVIEKVEWSLHVKEFDHV 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 ++ I Q + + +I I V +PG+V+ + G + + P++ L + LEE Sbjct: 121 NQQMVQLIEQLMKAAPPSTYGIIGIGVAVPGIVN-EEGDVLFAPNLNWREIPLKKQLEEH 179 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 F++ V ++ + AL E FG ++ E+ I + G G+GII ++ G+ G GE+ Sbjct: 180 FQLPIAVENEANAGALGEKVFGKGKESENMIFFSIGIGIGSGIIFGNSLYRGKGGYSGEV 239 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ +E G C CGN GC E A+ A+ Q+ L + + T+ + + A Sbjct: 240 GHMSIETNGPLCTCGNKGCWELFASEKAVLQQGEALYE---------EVLTLDDLFEKAR 290 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 KG+ A ++ + +G +LG IA IN NP+ +V+ + + L +++ + +AL Sbjct: 291 KGEQTAIDLFQKIGVYLGTGIANMINALNPELVVVGNRMVKGRPWLEHSLKQTVADRALS 350 Query: 366 AFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 + V S+L+ ++G L+ + L Sbjct: 351 FHAEQVLVEFSDLNENGISLGVSYLLIDSFLE 382 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 8/393 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + G++ L+++LN + I Q+GPISR IA++ ++P +VT +LI G++ E Sbjct: 1 MRRTGDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAED 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQT 124 S GGR+ I + IGV + TI +L + ++ YP+ Sbjct: 61 GTGESKGGRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEAATKQKKIYPVKAGLVSDL 120 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + +L++I F+ S + + IS+I PG+VD SG I + +++ + L + EE Sbjct: 121 IIQYVLDSIGDFLQSVD-DVSRCLGISIIAPGIVDAASGVIRFNSKLRLHDVPLKDMAEE 179 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 RF + ++ +D ++ALAE FG + ++ + V V G G+G++ NG IF G G GE Sbjct: 180 RFGLNTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGSRGGAGE 239 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIK 298 GH V+ G RC CGN GCLE A AI +L+ + +G ++ V + T Sbjct: 240 FGHTTVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADGDMTRITFD 299 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 +A ++GD + ++++ + ++ I +NLFNP I++ GE+ ++VL I+ Sbjct: 300 VFRQALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGGEMIRDNQVLFERIQKQ 359 Query: 359 INTQALKAFRTNLPVVRSELDHRSAIGAFALVK 391 + QA+ L + L + A A V Sbjct: 360 VMAQAMGTMVEGLEFRPTVLGADFEVKAAAAVL 392 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 108/372 (29%), Positives = 189/372 (50%), Gaps = 7/372 (1%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 QLN +V +I PI++ QIA Q+ L+ +V KIT + LI+ + S GG+R Sbjct: 3 QLNRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFERNHLIRVNGKGESNGGKRP 62 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ-QTLEHALLNAIAQ 135 + ++ IGV +GR + DLS K++ +E Q L L+ I Q Sbjct: 63 ELLEIIPDAYYIIGVDVGRSRIKAIIMDLSGKLIVKESIKTGRTVPSQQLIERLIYLIHQ 122 Query: 136 FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHD 195 + + + + + + +PGL+D ++G + + P EN LV+ +E+ F + + Sbjct: 123 VVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFHWENVELVKPIEDHFPFYTILENS 182 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 R++A+ EH+FGA + I + + G G+ I+ NG + G G+ GEIGHI +E G Sbjct: 183 NRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHITLEKDGP 242 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDS 309 C CGN GCLE +A+ A+ + L++QG R+ ++ K I AA +GD+ Sbjct: 243 LCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDAAKEGDA 302 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A+ +++ ++G +A INL +P +++AG +T A L+ ++ I + +K Sbjct: 303 AAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKRVIKARQMKFAGR 362 Query: 370 NLPVVRSELDHR 381 + + S+L + Sbjct: 363 KVKIRISKLGND 374 >UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788127 Length = 390 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 106/391 (27%), Positives = 185/391 (47%), Gaps = 13/391 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 G+ LVK++N++ + I Q+ P+SR ++++ + L A+V+ + ++L L++E+ Sbjct: 5 TGDQALVKKINTSIILDTIRQHAPVSRAKVSKLTGLNKATVSNLVQELCSNHLVQEIGPG 64 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGR+ ++ + +AIGV L T L DL ++LAEE L +++ Sbjct: 65 ESSGGRKPQLLLFNGQAGYAIGVELRVKQITAVLTDLEGRILAEEDTALEAHGVESVTRL 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 ++ I + +I I V +PG+VD D G + + P++ + L E LE + Sbjct: 125 MVGMIHGLMRQAPPSPYGIIGIGVGVPGMVDGD-GTVLFAPNLGWDMVPLQEQLELELGL 183 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ + A E FGA +D + + G G+GII NG ++ G G GE GH+ Sbjct: 184 PVTIDNEANAGAQGELRFGAGRDARHLLYISAGSGIGSGIIINGELYKGARGYAGESGHM 243 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 +E G C CGN GC E A+ + G + +P + + A G Sbjct: 244 SIEAEGRECSCGNRGCWELYASEKS---------YDGKDAVLPSRRTS--ELVHHAELGH 292 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 E +GR+LG I +N FNPQ ++I G +++A + ++ + + L R Sbjct: 293 KDTIRHFEELGRYLGIGITNLVNGFNPQSVIIGGPLSDARAWIEETLQQVVAQRTLPYHR 352 Query: 369 TNLPVVRSELDHRSA-IGAFALVKRAMLNGI 398 + + +EL RS IGA L + Sbjct: 353 ERMEIRFAELGSRSTMIGAAYSAISQFLGPV 383 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 98/398 (24%), Positives = 186/398 (46%), Gaps = 8/398 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 ++ GN+ L+++LN + + I + GPISR IA++ ++P +VT +LIE ++ E Sbjct: 1 MSRTGNLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSELIEGKIVYED 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 S GGR+ + + IGV + I +L KV + + + Sbjct: 61 GVGNSNGGRKPVLLRFNPDTHSIIGVSITNSKIKIAEMNLEGKVKKKSVEITNNEQGEDI 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 ++ + FI + + L +S+I PG+V+ + G I Y H+ + N L + +E Sbjct: 121 IKLVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNSHLGLYNIPLKKMVEST 180 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + F+ +D+ + AE YFG+ + + + G G+GI+ N I+ G G+ GEI Sbjct: 181 IGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAGEI 240 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-------PLDDCTIK 298 GH V P G +C CGN GC+E +I R+++ + + + T Sbjct: 241 GHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGNDFTKITPD 300 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 A + D L E+++ + +L TI AI+ +P+ I+++G I ++V + ++ Sbjct: 301 MFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSGAIIHGNQVFIDQLQEE 360 Query: 359 INTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAML 395 + + L R ++ + L +GA +++ + Sbjct: 361 VKKRLLPIIREDVNFQSTSLGPDFDLLGAASVILQGRF 398 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 178/386 (46%), Gaps = 11/386 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N ++ N A V RLI + PISR+++A+Q++L +V+ I +LI L+ E + S Sbjct: 8 NSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLVMERELGVS 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 GGR+ I + + + IG+ H + DLS + E T + L A++ Sbjct: 68 NGGRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGNTIHEVETMGKFDTNEELMEAVV 127 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 Q ID+ ++ + I + + G+V+P++G I + P + + L E LE+RF Sbjct: 128 QLCQQLIDATD-QVGTIHGIGISVHGMVNPETGVILFAPRFHLHDVALKEHLEQRFAYPV 186 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 F+ +D+R+LA E FG + + G G + +G++ G N GE+GH+++ Sbjct: 187 FIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENHITGEVGHMRL 246 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 + G C CGN GCLE +A A+ + V T+ + + D Sbjct: 247 DLDGPICSCGNRGCLEALAGEKALLRDF---------EAVDPQVKTLTELRRRLTDQDPH 297 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 A+ G ++G + I+L NP++I++ G + E ++ I+ + AL Sbjct: 298 ATAAYHRAGEYIGIGVLNTIHLINPKRILLGGPMFELAPSIVDQIKERVEHTALTTASRE 357 Query: 371 LPVV-RSELDHRSAIGAFALVKRAML 395 V + + A+ A AL ++ Sbjct: 358 TDVKMVPWSEKQGALSAAALATNSIF 383 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 107/395 (27%), Positives = 199/395 (50%), Gaps = 5/395 (1%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 G+ LV++LN + V ++ ++ P+SR +A + L A+V+ + +L GL+ EV Sbjct: 5 KHTGDQALVRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLVWEVG 64 Query: 67 QQAST-GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQT 124 +A+ GR + + IG+ +G + + D SS+++ + L ++ + Sbjct: 65 IEATDDVGRPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGKSPEE 124 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + + I + ++ ++ +++ + V +PGLVD G + + P++ + + EE Sbjct: 125 VLGLAADLIQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNLGWRDVPVRSMFEE 184 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 RF T +V ++ AL E YFG ++ + + G G GI+ G+I G G GE Sbjct: 185 RFPFTVYVENEANMAALGESYFGVARGYNCVLYISAGVGVGGGIVLGGQIMRGAMGFSGE 244 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ--SRVPLDDCTIKTICK 302 +GH+ + G C CGN GC ET+A+ +A+ +R+L L++ + S D T+ T+ + Sbjct: 245 VGHMTMVEDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTVPTVLE 304 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA GD LA V+ V R +G IA +N+ NP+ +V+ G ++ ++LP I + + Sbjct: 305 AARAGDRLARGVLNEVARDVGLGIANLVNVLNPEIVVLGGMLSMGGDLMLPTIRETLEHR 364 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 L+ L + + L S +G A V +L+ Sbjct: 365 GLRWLVQPLRLELAALGRESCVLGGIATVYDRVLS 399 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 117/409 (28%), Positives = 202/409 (49%), Gaps = 11/409 (2%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M G + ++ NS+ + +I + ISR +IA +++L+P++V+ I L G Sbjct: 1 MRVGTAVTTVDAAGMRAQNSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 L++ + S GGRR I F IGV +G T L DL +V A H R Sbjct: 61 LVRSIGAGVSRGGRRPTLIGFCDDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVR 120 Query: 121 -TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDS-GKIHYMPHIQVENWGL 178 + + + + +D+ + R + + + +P V P + GK+ + ++ + Sbjct: 121 EDPKGTLQKVRELVQEVLDAERVPRRSVAGMGIAVPSPVHPSAPGKLSPLLVPAWRDYDV 180 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 E+L F + FV +D AL+E Y+GA + ED +++ G G+G I +G ++ G Sbjct: 181 QESLRSAFGLPVFVDNDANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGA 240 Query: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK 298 G GEI H+ V+ G +C CG GCL T+ +AA+ +R L+ + + + T++ Sbjct: 241 GGTAGEISHMAVDSSGPQCVCGLRGCLVTLIGSAALLERARELMGRKDKRAL-----TVR 295 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + + A G+ A +VI+ +G +LG +A +NL NP +V+ GEI+ +LL + + Sbjct: 296 ELVEGARAGEPAARQVIDGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRAS 355 Query: 359 INTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNG---ILLQHL 403 + +AL +V S L R+ A+GA LV +A L LQH+ Sbjct: 356 VRKRALSTSMAETRIVTSALGDRAIAVGAATLVLQAALRDRTLFPLQHI 404 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 103/391 (26%), Positives = 178/391 (45%), Gaps = 7/391 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + GN DL+K +N V LI + G I+R +IA++ +++T I L + G+I E + Sbjct: 5 RKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILEGAE 64 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLE 126 +STGGRRA + + V++ L DL+++++ P E+ + Sbjct: 65 TSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIMENTSIPFSSEKKPEEAI 124 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + + + ++ R + L+ + + + GLV+ G + + EN L L F Sbjct: 125 ELIAKNVKKMCEN--RDMNHLLGVGIAISGLVNRRKGTVIRSTMLGWENVALEAMLHAYF 182 Query: 187 -KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + +V +I LAE + G + + V V G G ++ N +I+ G G GE Sbjct: 183 PDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQGGAGEF 242 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH ++P G +CHCG GCLE A+ R L + S + D + K+A Sbjct: 243 GHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSELK--DFHFDKVAKSAR 300 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 GD +A+E++ +G +LG I IN FNP+K++I GE + L I+ + Sbjct: 301 AGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKIDEIASQNFFS 360 Query: 366 AFRTNLPVVRSELDHRSAI-GAFALVKRAML 395 + + L+ + + GA LV + Sbjct: 361 GAGFETEITTTSLEDPAWLQGAALLVIHQLF 391 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 110/401 (27%), Positives = 203/401 (50%), Gaps = 9/401 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + GN L++ LN + V I GPISRI++A++++L+P++V ++LI G + E+ Sbjct: 5 KKGNHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVSEIGT 64 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 +S+GGR+ I + N + V + + +L +KV A+E +P+ + + Sbjct: 65 GSSSGGRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAKETHPIAGLQGEAVIE 124 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 LL + F+ + Q L + IS+ +PG+V G +HY +++ N L E+R+ Sbjct: 125 RLLQLMDDFM-AGQEDLERCVGISINVPGIVSDSHGVVHYNTKLRMTNVPLKRIFEDRYG 183 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + +V +D+ S+ LAE FG + I + + G G+GI+ N + G++G GE GH Sbjct: 184 MRTWVENDMNSVVLAERRFG-DYAFANLIYISIGDGLGSGILINDHLLRGKHGGAGEFGH 242 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTIC 301 V G RC CGN GCL++ + A+ R++ + G + + Sbjct: 243 TSVNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKIVPSVFK 302 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 +A KGD LA ++ E V HLG I +N+FNP+ +++ G++ + LL + I+ Sbjct: 303 EALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALILGGDLAHGNPELLDMVSVYIDR 362 Query: 362 QALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLNGILLQ 401 A+ + ++ + L +GA +++ + +L L++ Sbjct: 363 HAMPILKDDMVFGLASLGEEDKLMGAASVLLQDLLGFSLME 403 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 360 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 101/396 (25%), Positives = 188/396 (47%), Gaps = 5/396 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 A N +K N V I + G ++ +A + L ++ KI +L E LI++ Sbjct: 1 MADQNNQVQLKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLIRDG 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQQ 123 ++ GR+A+S V + IG+ + + I L +L ++LA E Y + + Q Sbjct: 61 QMESGGMGRKAVSYVINENYRYTIGIHINKFITGIALLNLRGQILAIERYSMDKEFENQN 120 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW-GLVEAL 182 L A+ I+ K +++ I V PG +D +SG I P++ + ++ L E L Sbjct: 121 DFVTMLAEAVELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPLKETL 180 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E R F+ D +A AE+++ ++DC + V V G G+G+I +G++ +G N Sbjct: 181 EGRTGFPVFLNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGANCIA 240 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV--PLDDCTIKTI 300 GE GHI ++ G C+CGN GCLE +++ A+ + + L+ + + TI+ + Sbjct: 241 GEFGHITIDINGPLCNCGNRGCLEAMSSGIAVLRMLGEQLENQKDHPLYHKRNALTIEDV 300 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 + +K D L ++ ++G ++ IN F+P+ I++ G + + + ++ N Sbjct: 301 FEMTDKKDLLTISILNRSAFYVGVAVSNLINTFDPEMIILGGILIQKYPMYFNIVQDVAN 360 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLN 396 + +K + N V ++ IGA +V N Sbjct: 361 QRKVKGAKENYMAVSVLGENAGVIGAGEIVTDHFFN 396 >UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterales RepID=B0K1L9_THEPX Length = 400 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 112/393 (28%), Positives = 190/393 (48%), Gaps = 6/393 (1%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 + LVKQ+N + V I + G ISR IA + L ++V+ + +LI G ++E Sbjct: 3 TADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGPG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEH 127 AS GGR+ I + IG+ L + I L DL + V+ E+ + +QQ + Sbjct: 63 ASKGGRKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAIIE 122 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L+ I + I + +R ++ I + +PG+VD G I P+++ ++ L E +E +FK Sbjct: 123 RLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSILMAPNLKWQDVPLKEIIENKFK 182 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + + ++ A+ E +FG + + V G G GII NG ++ G G GE+GH Sbjct: 183 IKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEMGH 242 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQG----YQSRVPLDDCTIKTICKA 303 + + +C CGN GC E A+ A+ + L G Y ++ + + I Sbjct: 243 MTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDIINY 302 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A KG +A E ++ +GR LG I IN FNP+ ++I ++ A ++L + + + Sbjct: 303 AQKGSEIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEKKC 362 Query: 364 LKAFRTNLPVVRSELD-HRSAIGAFALVKRAML 395 L + + S+L H AIGA +LV + Sbjct: 363 LVYRYYKVKIKTSKLQFHAGAIGAVSLVISELF 395 >UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK-family transcriptional regulator) n=2 Tax=Proteus mirabilis RepID=B4EVY3_PROMH Length = 403 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 225/398 (56%), Gaps = 1/398 (0%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-Q 67 ++D VKQ N V+RLID++GPISRI +++++ LAPAS+TKITR+L+E LI E + Sbjct: 5 PSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKATLAPASITKITRELVEAHLIHETEFP 64 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 GR A+ + E++ + + +R+ +L +L ++++ E+ + P++ H Sbjct: 65 GLGFRGRPAVGLKLESKGWQFLCIRVNNGSLLFSLRELDNQLVVEDTFDFPKQNSDAFLH 124 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L AI F YQ ++ L AIS+ + +VDP SG I+ P+ +++ L + ++E+ Sbjct: 125 HFLAAIDTFFQRYQSRVERLTAISITMNAIVDPISGVIYSSPYYAIQDIPLADKIQEKTG 184 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 V F+ H + + +AE +GA+++ D + + + GAG+++NG+ + + EIGH Sbjct: 185 VAVFLQHSVTAWTMAESLYGAAKNNTDILQIVIDDIVGAGVVTNGKTLHSNSHSAVEIGH 244 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 +V +C+CG GCLET + + ++ +L ++ S + T++T+C A G Sbjct: 245 TKVIDSQTQCYCGAKGCLETEISIPQLIKKAQHLAQENPTSILNQYPITVETLCDAVLIG 304 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D A ++I V + LG +A+ +N+FNPQKI+I + A L P I S I L + Sbjct: 305 DKQALDIINLVAQRLGFILAVMVNIFNPQKILIGSPLCRAKSALFPLILSSIQHHVLPRY 364 Query: 368 RTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 NL + +EL ++ + A +LVK A+ NG LL L++ Sbjct: 365 AHNLVIEETELRNKGTLPAASLVKEALYNGSLLLELMQ 402 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 358 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 111/393 (28%), Positives = 199/393 (50%), Gaps = 6/393 (1%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 GN L+KQ+N V + I ISR +I++ L A+V+ +T +LI+ G + E Sbjct: 2 GNHTLLKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYGK 61 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHA 128 S GGRR + + IG+ LG I L + +V+ EE+ + ++ L Sbjct: 62 SKGGRRPVLLQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFEEYANMKIGEDKEKLLRL 121 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L + I + + + + ++ I + +PG+++ +SG + P+++ +N L ++++F + Sbjct: 122 LFDLIEKSVKKAPQTPKGILGIGIGVPGIIEKESGTVLLAPNLKWQNVPLRSIVQQKFNL 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ ++ + AL E +FG D I + V G GAGII + ++F G G GE+GH Sbjct: 182 PVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVGHT 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR----VPLDDCTIKTICKAA 304 + + C CGN GCLE A+ A+ + L+KQG + R +D+ T I +AA Sbjct: 242 TINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWENVDEITPSRIIQAA 301 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +G + I V +G +A +N+FNP+ ++I + + ++ L + IN ++ Sbjct: 302 KEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQRSF 361 Query: 365 KAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 A NL + S+L R+ +G A+V ML+ Sbjct: 362 IAQFYNLKIEVSKLKDRAVVLGCIAMVISDMLS 394 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 183/395 (46%), Gaps = 9/395 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + ++++N A V +LI SRI I++ + L A+V+ I +LI L+ EV +S Sbjct: 6 DASAMRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEVGYGSS 65 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 +GGR+ I + +AIGV + T + ++ + + + L + LL Sbjct: 66 SGGRKPILLRFNANAAYAIGVDVQLSHMTTVVCNIRGEPVYRQVRTLGLSEAPDVRAVLL 125 Query: 131 NAIAQ----FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 AI + I + L+ + PG+VD G ++Y+P + V W ++ L Sbjct: 126 EAIEEELRKAIAAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSLFVGEWEILADLGRSV 185 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + F+ +D A E+ A + ++ + V + G GAGI+ G+++ GR+G GE G Sbjct: 186 DIPLFLDNDANCGAWNEYMAQAMK-LKNLVFVNMGLGIGAGIVIEGKLYRGRDGIAGEAG 244 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ + P+G C CG +GC E A+ + + + S + L D ++ + A Sbjct: 245 HMTINPMGSACMCGGYGCWEEYASERGLMRYLREAGADL--SALSLRDSLLEQALEQAQN 302 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 + +G++LG IA +NL NP ++++ G + A +LP +E I +AL Sbjct: 303 DNRACIRAFHSLGQYLGLGIANLLNLLNPDEVILGGSVARAATFVLPEVERVIKHRALLQ 362 Query: 367 FRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQ 401 + V S+ H AIGA L L ++ Sbjct: 363 NKQIPVRVGSQ--HAVAIGASLLAVHETLFASAME 395 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 357 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 106/396 (26%), Positives = 184/396 (46%), Gaps = 11/396 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-QQA 69 N VK LN + L+ YG +++ +IA + L +V +T +L++ LI E Sbjct: 8 NNRHVKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIAEAGFYDE 67 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHA 128 S+ GR+ + + + + +GV + + +L K + +++ P + ++ + Sbjct: 68 SSRGRKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNANRGSVVNV 127 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFK 187 +++ I +D K +I I V PG +DP GKI P++ + L +EE + Sbjct: 128 IISTIQAVLDESGLK-SRIIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKGLIEENTE 186 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + + D +AL E ++G + + V G G+G+I N +I+ G GEIGH Sbjct: 187 LPTQIEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPFGAGEIGH 246 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTIC 301 ++ G RC+CGN GCLE IA+ AI +RV L++G S + I + Sbjct: 247 CTIDIDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHGLDITDVI 306 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 A GD LA+ ++ R++G ++A INL P+ I+I G + + Sbjct: 307 TAGVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYFTYVRETSYN 366 Query: 362 QALKAFRTNLPVVRSELDH-RSAIGAFALVKRAMLN 396 ++L +F + + SEL IGA +V LN Sbjct: 367 RSLSSFHDKIMLQPSELGEYAGVIGAGTIVFEKYLN 402 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 355 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 178/394 (45%), Gaps = 15/394 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 G+ +K++N + + + I + G +SR +++ + L A+V+ L++ L+ E + + Sbjct: 3 TGDASYIKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEIE 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 + GR+ I + +AIG+ L + + DL ++ + L + Sbjct: 63 YNQVGRKPIMLSINAEAGYAIGIDLEYDQISFAISDLKGSLVLTDTIKLQSHAYADILSL 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L I + + + +I I + + GLV D IHY+P + L LE + Sbjct: 123 LTGQIKHYQERFAASRYGIIGIVIAIHGLVSTDE-VIHYIPSFGWHDVPLKSDLENALGL 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ A AE F + +D I V ++ G G G++ N F G++G GEIGH+ Sbjct: 182 QVKLENNANLSAFAERVF-FHHETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGEIGHM 240 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 V P G C+CGN GC E A+ ++ Q + ++ P D T I + Sbjct: 241 IVVPGGLPCNCGNKGCWEKYASETSVFQLLR--------AKKPDADITYAQIGNWIEAKE 292 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A+E+IE +L + IN++NP+ +V+ E+ L IES +N++ + Sbjct: 293 PDATELIEQFIYYLSIGLNNIINIYNPEVVVLDSELLRIYPDSLQHIESNLNSRV--SHY 350 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQ 401 + + S + +S +GA A+ + L +L Sbjct: 351 REIKI--STIGKKSCVLGACAIAIQNFLRVPVLN 382 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 353 bits (908), Expect = 5e-96, Method: Composition-based stats. Identities = 99/400 (24%), Positives = 186/400 (46%), Gaps = 12/400 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD- 66 Q G+ +L++ +N V I ++ P+SR I +++ L+ +V+ + L++ GLI E Sbjct: 2 QTGDTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESD 61 Query: 67 --QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQ 122 + T GR + + +G +L H + + +L + LA PL Sbjct: 62 ETTNSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVP 121 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVEN--WGLVE 180 + L + + KL ++ + + LPG +D +G H+ P + E L + Sbjct: 122 DAIVALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVALAD 181 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 + R + + +D L LAE +FG Q+ ++ ++V + G G G+ +G ++ G++G Sbjct: 182 MVRRRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQHG 241 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK-- 298 E GH +++ G RC CG +GC+E A+ AI + +++ D + Sbjct: 242 MGTEFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAHEGADDTAEAETR 301 Query: 299 --TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 T+ + A +G+ ++ G LG IA IN+ +P KIVI+G T A ++ PA+ Sbjct: 302 VATVVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISGSGTRAVDLIEPALR 361 Query: 357 SCINTQALKAFRTNLPVVR-SELDHRSAIGAFALVKRAML 395 + + L + ++ + D A GA +LV +A+ Sbjct: 362 AAVAANTLAVLQNRCEIIFHDQGDEVWARGAASLVLQALY 401 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 95/377 (25%), Positives = 176/377 (46%), Gaps = 12/377 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 ++ L+++LN A V +LI + G ISR IA+ ++L+ ++V+ I LI+ L+ E Sbjct: 8 TADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIG 67 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S GGRR I + + + IG+ + R+ + + DL++++ + T+ Sbjct: 68 TSKGGRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMP 127 Query: 129 LL-NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERF 186 L+ I+ + + AI V +PG +D +G+ P + +N + E L + F Sbjct: 128 LIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELSQTF 187 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHR-GTGAGIISNGRIFIGRNGNVGEI 245 ++ + +D A+AE+ +GA Q ++ + + + G GAG+I + +F G G+ GE+ Sbjct: 188 RLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSAGEV 247 Query: 246 GHIQV-EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GH + E N G LE +A+ + + ++ D + T+ + A Sbjct: 248 GHTTLSVENDESFGPINAGSLEALASQITVLRLAREQ-------KLISADDDVHTLVRKA 300 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 ++ +LG IA IN+FNP ++VI G I E +L+ I + + +AL Sbjct: 301 ESS-PEIQAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATVARRAL 359 Query: 365 KAFRTNLPVVRSELDHR 381 N +V L Sbjct: 360 SIAVNNTSIVPGALGRN 376 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 188/393 (47%), Gaps = 20/393 (5%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MTPG Q +++ N A + + Q G ++++++A + L+PA+V+ I ++L G Sbjct: 1 MTPGSQTS------LREANRARIVSAVQQRGSLTQVELAGVTGLSPATVSNIVKELTGAG 54 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-E 119 ++ S GRRA + G+ G + + D++ +++A++ PLP + Sbjct: 55 VLHTSPTSRS--GRRAQQVTLARNLGLVGGIHFGSRSLRVAVADVAHRIVADQRMPLPPD 112 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGL 178 + + ++S L+E++A+ V +P VD +G+I + + + + Sbjct: 113 HRADAGLERAALLLTEMVESVDSSLQEVLAVGVGVPAPVDVRTGQISTIGVLRGWDGICV 172 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 E LE R + +V ++ ALAE FGA++ + + +R+ G G GI+ NG +F GR Sbjct: 173 PEVLERRLGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLNGEVFHGR 232 Query: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK 298 +G GEIGH+ ++ G C CGN GCLET + + T+ Sbjct: 233 SGTAGEIGHVTIDDNGPICRCGNRGCLETFVGAPVLLSMLTA----------SHGHLTLP 282 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + A +GD VI GR+LG A NLF+P+ +V+ G + EA +L+ + + Sbjct: 283 DVIARAQQGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPILMDPLRTV 342 Query: 359 INTQALKAFRTNLPVVRSELDHRSAIGAFALVK 391 + + + + + VV SEL + + +V Sbjct: 343 LAQRTVPSTAGPVEVVASELGSAAEVRGALVVA 375 >UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA6_9BACI Length = 387 Score = 350 bits (898), Expect = 7e-95, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 163/383 (42%), Gaps = 9/383 (2%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 VKQ N + + + Q PISR +A+ L A+V+ + +L++ +++V S+GGR Sbjct: 8 VKQQNKKLILKTVYQLEPISRADLAKVLSLTKATVSNLVDELVQEHYLEQVGLGKSSGGR 67 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 R + + + + I V +G + L DL ++ + + + + Sbjct: 68 RPLMLKINEKAGYTISVDIGVNYIRSILTDLKGGIMKKAVETTDTNVYEDTMRYIETMVN 127 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 I+ L+ I +PGLVD D G + P++ + + + E F V V + Sbjct: 128 NLINDMDDAPFGLVGIGFGVPGLVDSD-GTVISTPNLDWQESDIRKRFEAAFDVHVIVEN 186 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 + + A E FG + I + G G G+I +G ++ GRNG GE+GH ++ G Sbjct: 187 EANAGAFGEKSFGEGISSDHFIYISGGIGIGVGLIFDGVLYRGRNGFTGELGHTIIQMDG 246 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CG GC E A+ I + L +P T++ A D + Sbjct: 247 LTCSCGKKGCWERYASELYILKEYEKL------KGMPWHQLTLEEAVTEAAA-DEDVRAI 299 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 RH + IN FNP+KI++ +T+A++ +LP IE I A+ + + Sbjct: 300 FHRAARHFAIGLTNIINSFNPEKIIVGNRLTQAEQYMLPVIEEVIAETAISPIAKGVGIH 359 Query: 375 RSELDHRS-AIGAFALVKRAMLN 396 + D + +G A + Sbjct: 360 FNNTDQLATVLGLSAFSIERFFD 382 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 349 bits (897), Expect = 9e-95, Method: Composition-based stats. Identities = 97/391 (24%), Positives = 186/391 (47%), Gaps = 7/391 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 +++ + N ++ I + I+R IA++ L+ +V IT LI++G+I + + S Sbjct: 8 DLNSITSNNRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIYVIGKGKS 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 +GG+R + F +GV +GR + + + V+ + P L + + Sbjct: 68 SGGKRPELLAVVPDRFFFVGVDVGRTSVRVVVMNNCRDVVYKVSKPTESVEPDELINQIT 127 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 + I+ + L ++ I V +PGL++ +G++ + P+ N L + L++ Sbjct: 128 EMTMESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNFGWNNIALQDELKKHLPFNV 187 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V + R+L + E + V + G G+ I+ ++ G +G GEIGHI V Sbjct: 188 LVENANRALVIGEIKNTQPNPTSCIVGVNLGYGIGSAIVLPNGLYYGVSGTSGEIGHIIV 247 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAA 304 E G C CGN+GC+E+IA+ AI + + QS V L K + AA Sbjct: 248 ENHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKIDAKMVFDAA 307 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +GD LA ++E ++GK +AI IN+ +P++I++ G +T + + I+ ++ + Sbjct: 308 KEGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMIKKAVSKYQM 367 Query: 365 KAFRTNLPVVRSELD-HRSAIGAFALVKRAM 394 + N+ +V + + +AIG +V + Sbjct: 368 RYAGGNVKIVVGKSGLYATAIGGAWIVANNI 398 >UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea blandensis MED297 RepID=A4BDK2_9GAMM Length = 402 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 136/399 (34%), Positives = 224/399 (56%), Gaps = 5/399 (1%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 + N+D VKQ N ++R+I +YG ISR Q+ E S LA SVTK+TR LIE+ L+ EV QQ Sbjct: 7 VANLDSVKQYNLMRLFRIIVEYGLISRTQLVEVSDLAAGSVTKLTRLLIEQNLVHEVAQQ 66 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S GR+A+ + +T + + R R + L DLS +L E PL + Sbjct: 67 QSERGRKAVLLAPKTDDIQILAARADRQHLYVGLCDLSGNLLQREAEPLNADNEDEFVAQ 126 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L ++ F+ ++ ++R ++ I V +PGLVD + G +++MPH+ V L + + + ++ Sbjct: 127 LTRSLRHFLTTHADQVRNVVGIGVTMPGLVDANRGIVNFMPHVPVHELPLADIITDALEM 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 C++ ++ALAE GAS +S+ + VH G GAGII N ++ G VGEIGHI Sbjct: 187 PCYINSFASAMALAEKQIGASFHARNSVFIEVHNGVGAGIILNNELYSGT--GVGEIGHI 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 Q++ LG+ C CGN+GCLET +++AI + +Q QS TI+ + +AA + + Sbjct: 245 QIDRLGKPCICGNYGCLETEVSDSAIVEHFNQ--RQALQSVDTERAETIQDVLQAAGELN 302 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A V++ H+G +A NLF P I++AG +T+A ++ P +E + T++L+ Sbjct: 303 ENALAVLKEAAAHIGTAMATVANLFRPDSIILAGAVTQAWSLIHPVLEQQLKTKSLQVRG 362 Query: 369 -TNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 + ++RS++ +ALV++ +L G + L + Sbjct: 363 LKPIELLRSDIYDSPWYSGYALVRQGLLEGDIFHTLFTD 401 >UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D7F4_PAESJ Length = 396 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 109/403 (27%), Positives = 192/403 (47%), Gaps = 23/403 (5%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M + N++ V+++N + V RL+ + SR ++ + S L +++T I +LI G Sbjct: 1 MIVTKTKRGTNLEDVQEMNRSLVIRLMRRREVCSRAELTQDSGLNQSTITNIINELISWG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 ++ E GRR+I I + IG+RL R T+ L+DL + P+ Sbjct: 61 IVVETGVIEGKKGRRSIGIKLNCEPYKIIGIRLARKSITVALYDLGGSEYKRQQIPINMA 120 Query: 121 TQQT-LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGL 178 T + + I + S + +IAI V+ PG + D G+I M + E + Sbjct: 121 DGSTNAFNRMKELIRDMMQS--NAVGNVIAIGVVTPGPLLRDEGRIGLMTYFPGWEKINI 178 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFG-ASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 E L + F++ ++ HD ++ ALA +FG Q+ I V +G GAGI+ G++F G Sbjct: 179 QEELMQEFELPVYMEHDAKAGALAHWWFGTPLQEQGVMIYVAAGQGVGAGIVIEGKVFRG 238 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 G GEIGH+ ++ G++C CGN GCLE + +A+ Q + + ++ Sbjct: 239 SLGMAGEIGHMSIDYKGQQCECGNRGCLELYCSTSALLQ------------TLKKEHASL 286 Query: 298 KTI---CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 K+I K G++ E + +LG + IN FNP +I++ E+ EA +LL Sbjct: 287 KSIWQELKEVKSGET--REAVRQAAWYLGFGLVNIINTFNPDRIILGDEMAEAGDLLLDT 344 Query: 355 IESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 ++S I L + L + + D + +G+ + ++L+ Sbjct: 345 VKSVIKEHVLPDVYSQLTIELASDDMDTMLVGSAIVAIESILD 387 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 346 bits (889), Expect = 9e-94, Method: Composition-based stats. Identities = 105/391 (26%), Positives = 177/391 (45%), Gaps = 15/391 (3%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 ++ LI +R ++A + L A+V++ L+E GL+ E + STGGR + + Sbjct: 10 GQIFGLIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLVVETKEGVSTGGRPPMVLG 69 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDS 139 + LG + + DL + L E L + + + + + ++ Sbjct: 70 FNKDAGVVLAADLGATHCRLAVADLGGRPLVELPADLDIAQGPDAVLGWVQDRFEELLEE 129 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERF-KVTCFVGHDIR 197 R E+ I V +PG VD G+ P + + + E ERF V V +D+ Sbjct: 130 AGRSREEVWGIGVGVPGPVDFARGQAVSPPIMPGWDRVPIPERFRERFGGVPVLVDNDVN 189 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE-R 256 +AL EH D E + V+V G G GI++ GRI G G G+IGHI++ E Sbjct: 190 IMALGEHRV-NWSDVEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEETV 248 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIE 316 C CGN C+E +A A+ +++ L SR + G+ A+ ++ Sbjct: 249 CRCGNVACVEAVAGGWALAKQLSGLGYPATGSR---------DVVGLVRAGNPAAARLVR 299 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 G +G+ +A +N FNP I+I G++ A + L I S + ++L +L +V S Sbjct: 300 TAGELIGEVLASLVNFFNPAVIIIGGDLAHAHEQLFAGIRSVVYQRSLPLATRHLQIVPS 359 Query: 377 ELDHRSAI-GAFALVKRAMLNGILLQHLLEN 406 ELD R+ I GA A+V +L ++ + + Sbjct: 360 ELDDRAGIHGAAAMVIEHVLRPETIEEMAQE 390 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 104/403 (25%), Positives = 174/403 (43%), Gaps = 8/403 (1%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + NS V R+I + ISR IA ++ L +V+ + +LIE+GLI+E Sbjct: 3 SLLAKATRQHTRNHNSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLIEE 62 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 S+GGR I + + + L D+ + PL + Sbjct: 63 TGAGQSSGGRLPILLRVVHESHCVAALSFEDTQIVGALVDMRGGIQRRVSVPLQGYRPED 122 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L L + ++ I + +PG+VDP G + + + + L + L++ Sbjct: 123 LPGYLTQLLDDLTAD---PAPHILGIGLSMPGIVDPVRGMVRRAVNFGLVDTPLRQLLQD 179 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 ++++ ++ + R ALAE+ FG + +++ + G GAGI+ NG +F G GE Sbjct: 180 QYRLPVYLDNAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGFGAGE 239 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQ----GYQSRVPLDDCTIKTI 300 IGH+ V G RC+CGN GCLET+A+ AI + L T Sbjct: 240 IGHVVVADNGIRCNCGNVGCLETVASVTAIVRAARRLATDPSSRLRSLASAAAAIDFNTF 299 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 C+A +GD + ++ VGR+LG +A + L N ++IV+ G I LL A+++ + Sbjct: 300 CRALEEGDDGVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAVKTSLA 359 Query: 361 TQALKAFRTNLPV-VRSELDHRSAIGAFALVKRAMLNGILLQH 402 AL V + E +G A+V + L Sbjct: 360 RHALAPLAAMTRVDLVPERHDAVLLGIAAMVLDHEFGLLRLDS 402 >UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=Meiothermus silvanus DSM 9946 RepID=C1XPR1_9DEIN Length = 777 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 100/407 (24%), Positives = 177/407 (43%), Gaps = 21/407 (5%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 + P ++ G+ +K++N A+ + ++R ++A + L ++++ + QL+ G Sbjct: 377 LVPMSPSRKGDPLEMKRINRRAILEALKGSRSLTRAELARRLGLTKSTISSLMDQLVSEG 436 Query: 61 LIKEVD---QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL 117 L+ + S GR + + A+G LG ++ + D + +L E + Sbjct: 437 LVLSRGDTLRPKSQLGRPGVEVGLNPAGAVALGAELGVENSVVLAVDWTGTLLFREEWGA 496 Query: 118 PERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWG 177 RT L + Q ++ E + + + LPG+VD G +HY P++ ++ Sbjct: 497 DPRTP---LSERLERLTQVTRHALQRHPEALGLGLALPGVVDA-RGWLHYAPNLGWRDFS 552 Query: 178 LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 + EAL+ R + +D S A E +F Q + + G G G++ G + G Sbjct: 553 VAEALQARLPFPVHIENDANSSAAGEVFFTPRQGQ--LAYLMLGTGLGVGLVHAGTVLRG 610 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 NG GE+GH + +RC CG CLET + A+ + L + Sbjct: 611 ANGAFGEVGHW-LGSSPKRCRCGRVSCLETEVSLRAMLEHYHALGGKAK---------DF 660 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 + K A G LA E + +GR LG+ IA ++P+++V+ G EA L + Sbjct: 661 WEVLKQAQTGHRLAVESLAELGRALGRLIANLAVAYDPERVVLGGAGAEAWDYLQQPLRQ 720 Query: 358 CINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML-NGILLQH 402 + A L V S H + A+GA ALV + L +G L +H Sbjct: 721 AVEEHAFLRQHQRLEVQPSLFGHLAPAMGAAALVLHSFLASGGLREH 767 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 106/391 (27%), Positives = 186/391 (47%), Gaps = 7/391 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQY-GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 +++ N R + GP+SR +IA + L+ A+V + +L+E G+++E + Sbjct: 14 TAQDIRRRNRFDALRCVFAAPGPVSRQEIAAATGLSFATVANLVAELLEAGVLREAGHED 73 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT--QQTLEH 127 S GGR + +G+ + + LFDL+ VL PLP+ Q + Sbjct: 74 SKGGRPRARLAVNAERGALVGIDVAETSVQVELFDLALTVLRGVRLPLPQTDVRPQDVVD 133 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 A++ + DS R ++ V +PGLV+ + G + P+ + L L ER Sbjct: 134 AIVAGVEGLSDSAVEAPR-ILGAGVSVPGLVEREGGVSVFSPYWSWRDVPLRSLLAERLP 192 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + ++ + +++ +AE +FGA ++ +D +++ + G GAGI +G ++ G + GE GH Sbjct: 193 MPLYLDNPLKAGTVAEMWFGAGREVDDLVVLTLRAGVGAGIAVDGALYRGATNSAGEWGH 252 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 + G C CG GC+E ++ I V L + P +D + + +AA +G Sbjct: 253 TCLVRGGRACRCGRQGCVEAYVSSRGIADTVRELDAESPL-LDPDEDVVVTKVARAAAEG 311 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIESCINTQALKA 366 D++A+E + R+LG+ A +NLFNPQ +V+ G + E + LL I AL A Sbjct: 312 DAVAAEAVARTARYLGEAAADLLNLFNPQTLVLGGWVAERLGEPLLRQTRDVIAAHALPA 371 Query: 367 FRTNLPVVRSEL-DHRSAIGAFALVKRAMLN 396 L RS + D+ +GA L+ Sbjct: 372 TLQALTFQRSTVPDNPVTLGAATFALEGFLD 402 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 176/370 (47%), Gaps = 8/370 (2%) Query: 36 IQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGR 95 + ++ + +VTK+ +LIE G++ + + + GGRR + + IGV + + Sbjct: 35 ADLGKELNFSVPTVTKMVGELIEDGIVMDFGKMETPGGRRPNIYGLNQSSGYFIGVDISQ 94 Query: 96 HDATITLFDLSSKVLAEE-HYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVIL 154 I L + ++ E+ E L I F+ ++++I + + Sbjct: 95 KRVHIGLINFKGDLIDEQMDISFEEAHPHERFERLCEIIEDFMSHTVVPKDKILSIGINI 154 Query: 155 PGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCED 214 G V+P +G + + L E EE+ + + +D R++A E+ G Q ++ Sbjct: 155 SGRVNPQTGHSYSFFYFDER--PLTEMFEEKLGIDVSIDNDSRAMAYGEYIKGRVQAEKN 212 Query: 215 SILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAI 274 I V V G G G+I NG+++ G++G GE GHI CHCG GCLET A+ +A+ Sbjct: 213 IIYVNVGWGLGLGVIVNGQLYYGKSGFSGEFGHITAFENEILCHCGKKGCLETEASGSAL 272 Query: 275 EQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIA 329 ++ L L G S + D+ T+ I A + D LA E+IE VG LGK +A Sbjct: 273 YRKFLEKLHNGQSSLLTQQKENEDEITLNDIIDVALQEDILAIELIEEVGNTLGKHVAGL 332 Query: 330 INLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFAL 389 INLFNP+ ++I G + A L+ + S I +L + + S+L ++ + +L Sbjct: 333 INLFNPELVIIGGTLANAGDYLILPLRSAIKKYSLNLVNKDSSIKVSKLGDKAGLLGASL 392 Query: 390 VKRAMLNGIL 399 + R+ G++ Sbjct: 393 LARSKFIGLI 402 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 175/396 (44%), Gaps = 17/396 (4%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 + +++ N A V L+ ++G SR ++++ S L +++T I LI+ G++ E Sbjct: 11 LKDLRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIETGSLVGG 70 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ-TLEHALL 130 GRR+I I T +G+R+ R T+ + D+ ++ E + + + + ++ +L Sbjct: 71 RGRRSIGIRLNTEKLIVLGIRVTRSSYTLAIIDIFGELKNLEKHSITKDLEDPSVFERIL 130 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 + F+ +K + + + LPG + ++ + +++ + E R + Sbjct: 131 EDASTFLLKNDQKP---VGVGMALPGPYLINEDTSLFLTNQGWKSFTFTKKFESRLHLPV 187 Query: 191 FVGHDIRSLALAEHYFGASQ-DCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 FV D A+ E +FG S+ + V G GAGI+ +G+I G G GEIGH+ Sbjct: 188 FVEQDSNVGAMGEWWFGNSEIGQGTKVFVSTGDGVGAGIVVDGKIQRGALGAAGEIGHMS 247 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + G +C CGN GCLE + AI + L K +++ G+S Sbjct: 248 INFEGPQCQCGNKGCLELYCSEKAILKAAKCLSKPI---------LNFESLVTEYRAGNS 298 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 +E++ G IA LFNP +V+ G + L + + F Sbjct: 299 AVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNRTVRRHIYPLFYQ 358 Query: 370 NLPVVRSELDHRS-AIGAFALVKRAMLN--GILLQH 402 N+ + S L+H S IG A+V +L LL H Sbjct: 359 NIGLQFSALEHDSCLIGIAAVVFDRLLKKPSFLLDH 394 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 105/384 (27%), Positives = 192/384 (50%), Gaps = 10/384 (2%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 ++N LI GP+S+ IA+Q Q++P + I +LI+ G ++E STGGR+ Sbjct: 5 EVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYVQEEGVGHSTGGRKP 64 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQF 136 + I + L I +L V +E++ + + ++ +++F Sbjct: 65 VLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSEQYGQVDSLRGEAYIDFVMKTLSEF 124 Query: 137 IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDI 196 I ++ KL E + IS+++PG+V + G + Y + + + L + +E F + +V +D+ Sbjct: 125 IGRFE-KLDECLGISIVVPGIVQAERGIVSYNAKLDLYDVHLKQKVEAAFGLRTYVDNDM 183 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 ++ +AE FG ++ ++ + + V G G+G+ NG I+ G +G+ GEIGH+ V P G Sbjct: 184 NAMMMAEKQFGTAR-YKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIGHMSVLPGGPA 242 Query: 257 CHCGNFGCLETIAANAAIEQRVLNL-LKQGYQSRVP------LDDCTIKTICKAANKGDS 309 C CGN GCLE AI R+L+ L QG ++ + + +AA GD Sbjct: 243 CPCGNQGCLENYVNWPAIYSRILSAWLTQGVKTAIIESAAGRPEAIKPTDFVEAACAGDP 302 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A V+E + L I +++L NPQ +V+ G + + L + IN++AL Sbjct: 303 FALTVVEEMAESLAVAITNSLHLLNPQAVVLTGPHVQNNLPLFKRLNEKINSRALNPIAR 362 Query: 370 NLPVVRSELD-HRSAIGAFALVKR 392 + V + L+ ++ +GA A++ + Sbjct: 363 HTEVKPASLETNKDILGALAVLLQ 386 >UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D084_HALOH Length = 378 Score = 340 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 97/393 (24%), Positives = 181/393 (46%), Gaps = 18/393 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q GN+ L+K++N A + + + Q GP+SR + + + L+P +++ IT +LI+ GLI EV + Sbjct: 2 QRGNMKLMKKINRALIIQTLSQQGPLSRADLTKITDLSPTTISSITEELIQEGLIVEVGE 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S GGRR I + +F+ + V + + LF+L +V+ H + + L+ Sbjct: 62 GESKGGRRPILLDINPEDFYILSVNIAVDVMYVYLFNLKFQVINSVHDLIKKPVSPNLDS 121 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L + + +++ + ++ + + G+++ + G I Y + + ++ L++ ++ + Sbjct: 122 QLKELVQKVVENSNIGKKNVVGMGIGATGIINKEKGLITYSASLGISDYPLLDKVKREYD 181 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + +D AL E FG + + + + G GII + I+ G+ G GE GH Sbjct: 182 FPILLENDTNLAALGEKKFGCGRQLTNFFYIMIGSAIGGGIIIDNEIYRGKFGGAGEFGH 241 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 I VE G C CGN GCL + I R ++ +Q + D+ C+ Sbjct: 242 ITVEKDGPLCECGNQGCLNAVL-TPYITVRSREEFRKSFQEIIKDDNFDS---CR----- 292 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIESCINTQALKA 366 +L I LF+P+ IV+ GEI A + +E I +LK Sbjct: 293 -------YHEFCEYLAMAITNYTKLFDPEAIVLGGEIARIAPERFYIDLEKYIKRMSLKG 345 Query: 367 FRTNLPVVRSELD-HRSAIGAFALVKRAMLNGI 398 + +PV+ S + + +G L + N + Sbjct: 346 MNSKIPVLPSSIRTNAVVLGGACLCFDNLYNNV 378 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 340 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 102/388 (26%), Positives = 177/388 (45%), Gaps = 16/388 (4%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 G+ ++ N V ++ + G +++ +IA + L+PA+V+ I +L E G + Sbjct: 21 PGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESGDVDVRPAV 80 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEH 127 +GGRRA+ + R+ IG+ G + + DL+ +VLAE+ + + Q Sbjct: 81 --SGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQAQEGIA 138 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERF 186 + + +++ + + LPG +D +G + + + ER Sbjct: 139 TAGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQMSERL 198 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + V +D ALAE ++GA Q D ++ G G+G++ +GR+ G G GEIG Sbjct: 199 GLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVIDGRVHRGGAGTAGEIG 258 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H ++ G C CGN GCLETI + + + + D T++ + A Sbjct: 259 HTTLDENGSVCRCGNRGCLETIVGTSVLLESLR---------TSHGPDLTVRGMIDRAVA 309 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 GD+ + V+ GR +G A NL NPQ IV+ G++ A + LL + ++ A+ A Sbjct: 310 GDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVHRFAVPA 369 Query: 367 FRTNLPVVRSELDHRS-AIGAFALVKRA 393 +V L R+ +GA ALV R Sbjct: 370 AVP--TIVAGVLGERAEVLGALALVLRE 395 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 339 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 99/377 (26%), Positives = 173/377 (45%), Gaps = 13/377 (3%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 G + + + K N V++ I G ISR+ +A + L P +V+ L+E L++E Sbjct: 3 GLPKKASREQSKLHNYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELVQE 62 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 V S GG+ A + H IG+ + H+ T+ +L + + L Sbjct: 63 VGLAPSGGGKPATLLSVLDDGRHLIGLDVAGHELRGTIINLRGAIRQRQTLAL---NGGN 119 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + L I Q + + ++ I + PG+++ +G + ++ N L + L + Sbjct: 120 VLEQLYQLIDQLLAN---THSPVLGIGIGAPGVINTTAGVVQQAVNLGWHNLALRDLLGK 176 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 R+ + ++ +D A+AEH FG+ ++ + +++ V RG GAGI NGRI G GE Sbjct: 177 RYGLPVYLANDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAWGAGE 236 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IGH+ V+P G C CG++GCLET+A+ +A+ L + ++ TI + A Sbjct: 237 IGHVVVQPHGTLCRCGHYGCLETVASTSAL-------LTKLDATQPQSQPWTIAEVQAAL 289 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 D +++ +LG IA + L N Q I++AG + + LL + + AL Sbjct: 290 AANDPTVRALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRRSLAQHAL 349 Query: 365 KAFRTNLPVVRSELDHR 381 + V S L Sbjct: 350 QTLVAATDVQVSTLGSD 366 >UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5RGV2_CLOCL Length = 393 Score = 338 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 168/384 (43%), Gaps = 19/384 (4%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + + +K++N V L+ ++ +++ IA++ ++ +V +LIE G ++E S Sbjct: 11 DQETIKKINQNNVLYLLYRHDQLTKHDIAKKLGISIPTVVTNINELIELGFVEEAGVGKS 70 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 TGGR+ + + + +++GV + + + L +L +++ E + E Q ++ Sbjct: 71 TGGRKPVIVKFLPDSRYSMGVVITKDYVRMVLTNLHFEIIKEVSISIDEELQS--IDYII 128 Query: 131 NAIAQF----IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 A+ +F + +++ I LPG V+ + + ++ ++N F Sbjct: 129 EAVKEFQKNVCEELSIDENKILGIGFSLPGTVNEKTLILENAINLGIKNIDFKNY---DF 185 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 ++ ++ + A AE++ + I V + G G GI+ N ++ G N GE G Sbjct: 186 NCPVYIENEANASAYAEYFVYPDKSNSKLIFVSITEGIGTGIVFNSLLYKGANKRAGEWG 245 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ + G+ C CG GC E A++ A+ + Y L I I ++ Sbjct: 246 HMTIVKDGKSCACGKNGCWEVYASSKALLKT--------YNKDTGLKRRNISEIFMELDE 297 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 D +V++ +L + I I + +P KIVI GEI + + A+ + Sbjct: 298 -DYKTQKVVDEYLEYLAEGIKNIILIMDPDKIVIGGEIAFYEDYIKEALNEKVYKPNAFF 356 Query: 367 FRTNLPVVRSELD-HRSAIGAFAL 389 + + ++L + S IGA L Sbjct: 357 TAKDCKIEFTKLKANASVIGAALL 380 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 337 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 95/398 (23%), Positives = 182/398 (45%), Gaps = 10/398 (2%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G + G+ L+K++N + + I + I R IA+ + L+PA+VTKIT +LI RG++ Sbjct: 6 DGVKRRGSKHLIKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVL 65 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 E S+GGR+ I + + +GV++G + + D + ++ Sbjct: 66 EAGSAESSGGRKPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIVESARCDTESSDPG 125 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 T+ + + N + Q K L+ I + + G+VD G + + + + L+ Sbjct: 126 TIVNVIKNCWEKC---RQEKQSILLGIGIAVSGVVDSKEGIVRDSFLLGWRDVPIASLLK 182 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 E FK V +D+ S A++ + G ++D +++++ + G G +I +G+I G VG Sbjct: 183 EVFKCEVLVMNDVDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKIHN-AKGGVG 241 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNL-----LKQGYQSRVPLDDCTIK 298 EIGH+ V G +C CG+ GCLE A+ A+ +++ ++ LK+ Y+S + I+ Sbjct: 242 EIGHMTVVKDGAKCTCGSNGCLEAEASFGALAKKISSITESKKLKELYKSVKQSESSEIE 301 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + +A + + V E +G + IN+ P ++I GE E + L Sbjct: 302 YLREALKRDRKAFNHVFEEYAVLVGIALKNIINMLAPDYLLIGGEALEFQEKFLNKAIQY 361 Query: 359 INTQALKAFRTNLPVVRSELDHRSA-IGAFALVKRAML 395 A + +L + +G ++ + Sbjct: 362 AQKNAFGKLGEKVMFNVDDLGEVAWNLGVIFVLMDNLF 399 >UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH Length = 411 Score = 337 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 127/402 (31%), Positives = 220/402 (54%), Gaps = 4/402 (0%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 P + G++DL++QLN VY ++++ +SR ++ + L+PAS+TKITR+L++ GL+ Sbjct: 8 PMNEIVKGSIDLIRQLNYGLVYASLEEHKELSRTDLSRLTGLSPASITKITRELLDGGLV 67 Query: 63 KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 + + GRR + R F + +RLGR + LFDL+ + LA + E + Sbjct: 68 VTCGESSVGRGRRQTLLRINERRFQFLSMRLGRGYVDMALFDLAGRSLARHRHVFSEGER 127 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 L +L+ AI F+ +K L I++ LPG V+ SG + + P + NW L L Sbjct: 128 ADLLASLVRAIEGFL---PKKALRLACIALCLPGQVERHSGMVKHFPFYDLRNWPLGPTL 184 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 +E F V V D+R+ AE +GA+++C D++LV VH G G++ NG++ + + Sbjct: 185 QEAFAVPVLVSGDVRTWIQAEREWGAAKNCADAVLVFVHNDIGVGMVVNGQLIESESALL 244 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 G++ H+Q+EP G+RC+CG FGC T+ N A+E + +L ++ + +P + TI+ +C+ Sbjct: 245 GDLSHLQLEPYGQRCYCGGFGCACTLVTNQALEAQYRDLRERMQEYDLP-ESVTIRELCE 303 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A G+SL +++ L + ++ I L NP K+++ GEIT AD++L P + + +Q Sbjct: 304 LALAGNSLCQDILHQAAGRLSRVLSNLICLLNPGKLLLGGEITRADRLLFPMLHQSLASQ 363 Query: 363 ALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLL 404 + L + + V +A+ +G LL LL Sbjct: 364 LPAEYLVRLQIESTHFYEDPTKPTSVQVHKALRDGSLLLDLL 405 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 106/388 (27%), Positives = 193/388 (49%), Gaps = 14/388 (3%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI--KEVDQ 67 G++ ++ N + + + G ISR ++A ++ L+ ++V+ + L +GL+ +EVD Sbjct: 8 GSLASLRDRNRRLLVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLVAEREVDG 67 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLE 126 GGR + + E A+G+ G+ + + DL+ VLA+ P+ E++ Sbjct: 68 AGPQGGRPPVLLSLERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPMETEQSAPEGF 127 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEER 185 + + Q + + ++I + +PG +D +G++ + E + R Sbjct: 128 EVAVALVHQALADAGVEQTDVIGAGMGVPGPIDISTGEVGSSAILPGWIGLRPREDMSAR 187 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + V +D ALAE +GA +D +D + V+V G G+G++ G+++ G G GEI Sbjct: 188 LGLAVRVENDANLGALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGAGGIAGEI 247 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH V+ G C CGN GCLETIA+ +++ LL+ + D TI+ + A Sbjct: 248 GHSMVDERGAVCRCGNRGCLETIAS----TRQIRELLRPARGA-----DLTIEEVIAHAR 298 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +GD + VI R +G +A N+ NP K+++ G+++ A VLL + ++ A+ Sbjct: 299 EGDRASRRVIGDAARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPLRDEVSRHAVP 358 Query: 366 AFRTNLPVVRSELDHRS-AIGAFALVKR 392 A ++ +V L R+ +GA ALV R Sbjct: 359 AAGGHVEIVPGVLGRRAEVLGAAALVLR 386 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 100/392 (25%), Positives = 187/392 (47%), Gaps = 7/392 (1%) Query: 15 VKQLNSA--AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +++LN + + + +SR +A++ +L A+++K ++L+ + +I E STG Sbjct: 9 IRKLNRTDYRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHATLESTG 68 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR S++ IGV LG I L+ +++ +TQ+ + L Sbjct: 69 GRPRKSLIVNKEYKKIIGVNLGAGFINIVASHLNGEIIQIRQRKFVYKTQEKVLDLLYEG 128 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I+ ++ + +I I + GLVD G + + PH + + + LE +F + V Sbjct: 129 ISDMVEKFGE--ESIIGIGLATHGLVDRKKGTVIFSPHFKWKKLDIRRELERKFNLKVIV 186 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D+R++ AEH +G + + ++ +L+ + G GA I NG+IF G N + GE+GH V Sbjct: 187 ENDVRAMLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGHFIVNE 246 Query: 253 -LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 +C CG FGCLET + A+ +V+ L++ ++ + TI I + + Sbjct: 247 KSTIQCRCGKFGCLETECSEQALINKVVWELEKKDKNESK-EKITIDKIYSRSKHKEEPY 305 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 +++ GK I +N+ + +V+AG+I +K+ + ++ L+ F + Sbjct: 306 YSIVKEAAYETGKVIGNILNILDIDNVVVAGDIIMTEKLYMNNFRKGVDRMILEDFNKKV 365 Query: 372 PVVRSELDHRSAI-GAFALVKRAMLNGILLQH 402 +V S LD I GA +LV + G L Sbjct: 366 KIVSSALDDMIGIYGAISLVTSNLFVGEKLMK 397 >UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida fusca YX RepID=Q47PH9_THEFY Length = 417 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 102/406 (25%), Positives = 166/406 (40%), Gaps = 10/406 (2%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G V++ N V R I P SR +A + L A+V+ + +LI+RGL+ Sbjct: 3 GATEGPAGFQAVRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLVC 62 Query: 64 EVDQ-QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT- 121 E GR + + A+G+ + + DL + + H R Sbjct: 63 ETGLVNERRVGRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARAA 122 Query: 122 -QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + L + + + + R L+ +SV +P LVD SG + P++ N+ L + Sbjct: 123 GPEECAKQLKTLLLETVADPLLRDRPLLGVSVAIPALVDVSSGTVTNAPNLGWRNFPLQQ 182 Query: 181 ALEERF------KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI 234 L E V +D A+AE+ G D + + G GAG++ NG Sbjct: 183 RLTELLADTPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLMNGEP 242 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 G +G GE+GHI + G C CG GCLE +A +I +R + L R + + Sbjct: 243 LRGASGFAGEVGHIPLLKDGPACACGQDGCLEALAGLDSILRRAVPDLVPEGPVRGSVVE 302 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 + + A GD+ A + +E G LG+ A +NL NP I++ G LLP+ Sbjct: 303 SLVAETVRRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGYFVPLSPWLLPS 362 Query: 355 IESCINTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLNGIL 399 + + N + S L +A G + A+ G+L Sbjct: 363 CREAMAAYSFAPNSGNCRIEPSTLGLSAAARGGAMALIDALDTGLL 408 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 111/388 (28%), Positives = 195/388 (50%), Gaps = 13/388 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK-EVDQQA 69 N LV+++NSA ++ +I Q IS+ ++++ S + PA+++ I L G+++ + D Sbjct: 7 NSALVRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRRDTDAPT 66 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 GR ++ + R + G+ + I + + A+ P + + A Sbjct: 67 GRAGRPTTALSLDPRAGYLAGISVEPDAIRIVISTIDGTACADLAVPGSTAPEAAIAAA- 125 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + + + S + L+A V +P LV G+I + P+I + + E L ++ KV Sbjct: 126 RSGVTAALRSLRATRATLLAAGVAMPALV-STGGRIVFAPNIGWRDLDVAENLAQKLKVP 184 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D+++ ALAEH FGAS+D D + V G G G+ G ++ G +G GEIGH++ Sbjct: 185 VRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHGLAGEIGHMK 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + P G C CG GC E + AI + +L +G+ +R + ++ KA GD Sbjct: 245 IVPGGRACGCGGQGCFEAYVSEKAI---LSDLAARGHGAR------DVASVRKACEAGDP 295 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 +A V+ GRHLG +A IN+ +P++IV+ G + + LLPA + AL A Sbjct: 296 VARAVLAEAGRHLGLALANLINIISPRRIVLGGSLAQLAPFLLPAAMETLEANALAAIYR 355 Query: 370 NLPVVRSEL-DHRSAIGAFALVKRAMLN 396 ++ +V SE+ +A+G AL + L+ Sbjct: 356 DVEIVVSEMSGSAAAMGGIALALQQFLD 383 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 99/395 (25%), Positives = 193/395 (48%), Gaps = 14/395 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + ++ +K+ N+A +++ + GP++R +IA +++L P++V+ IT LI + ++KEV Sbjct: 2 KKASLSSLKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEVGS 61 Query: 68 QA-STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 + S G++ I + +F IG +G + + + + +L + + + Sbjct: 62 EDVSRVGKKGILLDINYDDFLFIGYDVGSAYSRVIVSNGKGDILYSKRFVSEKN------ 115 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 LL I + I + K +I I + PG +DP++G + +I + N+ + + +++ F Sbjct: 116 DKLLKQIYENIKMVKNKF-NIIGIGMAFPGYIDPENGVVIRSHNIDISNFEVKKVMKKEF 174 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + +V H+ +A S +D ++ + G G GI+SNG+I G GE+G Sbjct: 175 NLPAYVDHNTIMMARN-LISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGELG 233 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ V P G +C+CG GCLET +++ AI + + + + + K + + A K Sbjct: 234 HVTVNPEGRKCNCGKNGCLETESSSKAIVRNYEEISGKNLECEGSCES---KLVYELAKK 290 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 GD A + E G++LG IA +N+ NP+K+ IAG ++ + L + E N Sbjct: 291 GDENAIKAFERAGKYLGIGIATLVNILNPEKVYIAGGVSNGWEFLKDSTEQSYNQHIF-Y 349 Query: 367 FRTNLPVVRSELDH-RSAIGAFALVKRAMLNGILL 400 ++ + S + +A GA + L+ Sbjct: 350 ANKDVTIEVSSIGEYITACGAATYAFEKYVREELI 384 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 189/387 (48%), Gaps = 6/387 (1%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ--QASTGGRRAI 77 ++ L+ G I+R +IA ++P SVT +T +LI G ++EV++ + ++ GR + Sbjct: 34 RQQIFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPV 93 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEHALLNAIAQ 135 ++ + IGV+L T TL D LA +++ L I + Sbjct: 94 ALELVPDALYVIGVKLSDELHTATLTDFGGNALASASQITTADKKSADELLTETEAIIRK 153 Query: 136 FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHD 195 S + +++ AI V + G+V+ ++G + + P ++ + L + FK + +D Sbjct: 154 VCKSAKISQKKISAIGVGISGIVNYETGVVAWSPLLEELDTPLGDIFSTYFKTPVCIDND 213 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 L LAE +FGA + + ++ + G G G +S+ R+F G + E+GH +V+ G Sbjct: 214 ANVLTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDGA 273 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 C CG GCLE A+ A+ + L R L+D +K++ + A GD + ++ Sbjct: 274 LCRCGQRGCLEAYLADYALAREASTALITPSSKRQDLNDY-LKSLYEMAKLGDQASLKIF 332 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV-V 374 + GR+L ++ I+LF+P+ I+++G+ + + + ++ + + AL R + + + Sbjct: 333 KRAGRYLAVALSNIIHLFDPKLIILSGKPMQYEFLYDEEMQIEMRSLALYKSRFDTQIEI 392 Query: 375 RSELDHRSAIGAFALVKRAMLNGILLQ 401 +S A GA AL + I+++ Sbjct: 393 QSWGSMVWARGATALALTELTKTIIVE 419 >UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=1 Tax=Streptomyces avermitilis RepID=Q82LB9_STRAW Length = 424 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 170/392 (43%), Gaps = 4/392 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++ N V R I P SR ++A + L+ A+V + +L++ G++ EV + S Sbjct: 14 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLGMLTEVGFEDS 73 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHA 128 GGR + + IGV + + LFDL LA + E + + Sbjct: 74 AGGRPRGLVAVNSGGGALIGVDIAETYVRVELFDLGLGQLARADEDMRPGESRPEQVVGH 133 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + A+ + ++ + V +PG VD D G Y P+ + L+ L E Sbjct: 134 VAAAVGSVVAQAGVDGARVLGVGVSVPGQVDRDRGIAEYAPNWDWHDVPLLSLLAEHITH 193 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ + +R+ A+AE +FGA++ D+++V + G GAG+ G + G + + GE GH Sbjct: 194 PLYLDNPLRACAVAELWFGAARGRGDAVVVNLGTGVGAGLALGGALHRGVSNSAGEWGHT 253 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G CHCGN GC+ET I Q + L TI + + D Sbjct: 254 TLVLDGRLCHCGNHGCVETYVGAPGIMQNLRELSPADPLLHPGDQTATIDALARGVAARD 313 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIESCINTQALKAF 367 +A +V+ R+LG IA +NL NP+ +V++ + + LL + + AL+ Sbjct: 314 PVALKVVRDTARYLGAGIADLVNLLNPEVVVLSSWVAATLGEPLLDEVREAVARHALRRP 373 Query: 368 RTNLPVVRSELDHRSA-IGAFALVKRAMLNGI 398 + +V S + +GA L + Sbjct: 374 FASTEIVLSPIPTDPVCLGAATFALEGALQSV 405 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 100/355 (28%), Positives = 168/355 (47%), Gaps = 4/355 (1%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 D++K N V R I Q G +SR I++++ L+ AS+T IT +L+E LIKE S G Sbjct: 6 DILKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRLLEANLIKENRYGKSKG 65 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GRR + + ++ AIGV++G + DL + E+ PL + + + + Sbjct: 66 GRRPVLLGINEKHSWAIGVKVGYLYLYFVVTDLLGTPVLEQKIPLNTASYNAVVEKIADF 125 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 + + + R+ + I V + G VD + G + ++ N + LEER K V Sbjct: 126 VNTIVKIPEYVDRKFLGIGVAVSGSVDSEHGIVKSSYILEWGNVPIGPVLEERIKAPVLV 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D+ S A+A + G ++ ++ I + + G G +I G+++ G G GEIGH+ V Sbjct: 186 YNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGKLYTG-RGGAGEIGHMTVIC 244 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVL---NLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 G++C CG++GCLE + A+ R+ N+ +S + +D I I KA Sbjct: 245 DGKKCSCGSYGCLEAEISFNALVDRIKKKTNIESLKNRSCLTTEDEAIHYIHKALQIDRE 304 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 E + + LG I IN+F P ++I GE E + L + Sbjct: 305 AVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFLKKAILIARENSF 359 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 333 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 106/396 (26%), Positives = 185/396 (46%), Gaps = 12/396 (3%) Query: 11 NVDLVKQLNSAA---VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 NV V N + V G + + ++ L+ +T + LI GLIK+ + Sbjct: 13 NVTGVAYKNVSLKKYVISYFANIGNATIADLCKELNLSAPKITNLLSDLIADGLIKDYGK 72 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA-EEHYPLPERTQQTLE 126 STGGR+ + IGV + ++ I L +L ++ E P + Sbjct: 73 VESTGGRKPNLYGLVPDSAFFIGVDIKQNHINIGLSNLQKNLIRITEKIPYHLDNNKESL 132 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 AL I FI +L+ + + L G ++ +G + + E L + +E + Sbjct: 133 EALCKLINDFIGELTIPKEKLLGLGINLSGRINYATGYSYSFFYFNEE--PLSKIIESKI 190 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + F+ +D +S+A E G + ++ + + + G G GI+ NG+++ G++G GE G Sbjct: 191 GIRVFLENDSKSMAYGEFSAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSGEFG 250 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTIC 301 HI + C CG GCLET A+ A+ + L +G S + +D ++ I Sbjct: 251 HIPMFDNEIICRCGKKGCLETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKMEDII 310 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 AA D LA E+I +G +LG+ IA+ INLFNP+ +++ G + ++ + I+S IN Sbjct: 311 NAAIHDDVLAIELIAKIGDNLGRGIALLINLFNPELVILGGSLAATEEYIRLPIKSAINK 370 Query: 362 QALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLN 396 +L + + S+L R+ IGA LV+ +L+ Sbjct: 371 YSLSLVNQDTNLKMSKLGERAGIIGACLLVRNRLLS 406 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 176/392 (44%), Gaps = 4/392 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++ N V R I P SR ++A + L+ A+V + +L++ +I EV + S Sbjct: 7 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMITEVGFEDS 66 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHA 128 GGR + IGV + + LFDL+ VLA + E + + Sbjct: 67 AGGRPRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGENLPEQMVGH 126 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + A+ + + ++ + V +PG VD +G Y P+ + L++ L E Sbjct: 127 VAAAVGSVVAQAGIEGARVLGVGVSVPGQVDRATGISEYAPNWDWHDVPLLDLLTEHIAY 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ + +R++A+AE +FGA++ D+++V + G GAG++ G + G + + GE GH Sbjct: 187 PLYLDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGVSNSAGEWGHT 246 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G CHCGN GC+ET I + L + TI + + + D Sbjct: 247 TIVLDGRLCHCGNHGCVETYVGAPGIMLNLRELSPRSTLLHPEDQTATIAALARGVARQD 306 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAF 367 +A +V+ R+LG IA +NLFNP+ +V++ + A + L+ + + AL Sbjct: 307 PVAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAALGEPLVAEVREAVARHALPRP 366 Query: 368 RTNLPVVRSELDHR-SAIGAFALVKRAMLNGI 398 +V S + + +GA L + Sbjct: 367 MAATDIVLSLIPTDPACLGAATFALEGALQSV 398 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 98/389 (25%), Positives = 178/389 (45%), Gaps = 18/389 (4%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 + R + SR ++ + + +V+ QLI L+ E + STGGR + Sbjct: 13 LLRHVRTGRARSRAELVALTGASRNTVSARVDQLIAANLLAEGGRGWSTGGRPPTLLQFN 72 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQ 141 +R + V LG + + DLS++VLA +P+ + + + + Sbjct: 73 SRAGCVLAVDLGVTSVDVAVTDLSAQVLATVGHPIDIADGPRPVLAEVDRLAQLVLADAG 132 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLA 200 + ++ A+ + +PG V+ SG+ + P + ++ + A R++ +V +D+ +A Sbjct: 133 LEPADVCAVGIGVPGPVEHSSGRPSHPPIMPGWHDFPIPSAF-GRYECPVYVDNDVNVMA 191 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV-EPLGER--C 257 L E GA+ +D ++V+V G G G+I +GR++ G G+ G+IGHI V P G C Sbjct: 192 LGEM--GAAGSVQDVLVVKVGTGIGCGVIVDGRVYRGAQGSAGDIGHIHVTTPDGRLVTC 249 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEY 317 CG CLE +A A+ + + L T + + + A +GD A E++ Sbjct: 250 RCGQENCLEALAGGGALLRDAVAA---------GLPVSTTREVVERAAQGDGAAIELVRE 300 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 GR +G +A +N FNP +IV+ G + +A LL I + +++ L + SE Sbjct: 301 AGRTIGTVLAALVNFFNPHRIVVTGGVAQAGVPLLAGIRESVYRRSMPLAARALEITVSE 360 Query: 378 LDHRSA-IGAFALVKRAMLNGILLQHLLE 405 S +GA + L+ ++ L Sbjct: 361 APELSGRVGAALMAIEGFLDEESVEQALA 389 >UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KTE3_CLOPH Length = 381 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 172/388 (44%), Gaps = 23/388 (5%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 +G+ +L++ +NS V I Q PISR I+++ L A+++ I I L+ E+ + Sbjct: 3 LGSKELIRDINSKLVLETIIQNEPISRAAISKKLGLTKATISAIVSDFINDKLVVEIGSE 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 + GR+ I + + +AI V + + + DL + + + P ++ L Sbjct: 63 DTGLGRKPILLSFHKKAGYAICVDIEVSRISCMISDLKGEQRSVKQIKTP--SESNLVPV 120 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L++ I Y++ LI I++ + G+V + + + P+ + L E L F V Sbjct: 121 LIDLIQSMESEYEKTPYGLIGIAIGIHGVVHQNE--VLFTPYYNLNGINLSEQLGSYFGV 178 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ AL E + + + +H G G GII N +++ G +GN GE GH Sbjct: 179 PVFLENEANLSALGEKAYLP-ETYTSLANLSIHSGVGLGIILNKQLYTGYHGNAGEFGHT 237 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 V G C CGN GCLE A+ A+ + +D ++ + A K + Sbjct: 238 IVVMNGRTCPCGNQGCLEQYASERALLKEYS-------------EDASLDDLLLAYEKKE 284 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A V+E+ ++ + N +P+ I+I T A L I +N + + Sbjct: 285 PKAMGVMEHFVNYMAVCVNNLQNTISPEIIIINSAFTNAYPELAEMIAKKVNNKLV---- 340 Query: 369 TNLPVVRSEL-DHRSAIGAFALVKRAML 395 +P++ S L DH +G ++ + L Sbjct: 341 DKIPLIASNLKDHSILLGGITVLVKNFL 368 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 101/377 (26%), Positives = 179/377 (47%), Gaps = 6/377 (1%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 +D+ K +++ + Q G S ++A+ + S T I L+ G I E + Sbjct: 12 IDIRKNRIRSSLLLHLYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWITETGTGPAR 71 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GR + ++ + + + + RHD + +FDL ++++ + + L Sbjct: 72 AGRPPVLYGLNSKKYLTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDDSANFLEELFA 131 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + F+ S +L I V +PGL++ G ++ LV L+E F + Sbjct: 132 STDDFLKSNNISHSKLWGIGVSMPGLINSSQGINLTYLNLTPPGVPLVTYLKEHFDLPVC 191 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 + +D ++ + EH FG + D + + + G G GII NG +F G +G GE+GHIQV+ Sbjct: 192 LFNDTKATTIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGASGFAGELGHIQVK 251 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP------LDDCTIKTICKAAN 305 P G CHCG GCL+TI + A+ ++ + G + + L+ I +A + Sbjct: 252 PDGMLCHCGKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLEQLETSHIIEAVH 311 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 GD + +++ VG LGK +A A++LFNP+ I++ G + EA + IE IN L Sbjct: 312 AGDEFSIDLLSTVGTELGKGLATAVHLFNPEVIIVGGLLAEAGPFISNPIEQAINKYCLS 371 Query: 366 AFRTNLPVVRSELDHRS 382 F+ L + S+L ++ Sbjct: 372 DFKNPLSIHISKLGSKA 388 >UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus sp. SG-1 RepID=A6CIT4_9BACI Length = 372 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 182/394 (46%), Gaps = 33/394 (8%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + G+ +L+KQ+N + + P+SR ++ + L+ ++V+ I +LI++ LI E Q Sbjct: 2 KKGDYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEEGQ 61 Query: 68 QAST--GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 ST GGR+ I + + IGV +G + + DL +++ +E +P + ++ Sbjct: 62 GESTKEGGRKGIQLFFNPKCSFGIGVDIGGTKILLVVTDLDGEIIFKEEHPTEKNPEK-- 119 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 ++ I FID L + A+ + +P +++ G + P ++ ++ ++ L+E+ Sbjct: 120 ---IVKLIYNFIDRSNTPLDLISAMGIGVPSIINTKEGIVVDAPALKWRDYRFLDFLKEK 176 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 F+ CF+ +D+ E FGA +DC D + + + G G+ + +NG+I G + GEI Sbjct: 177 FEFPCFLNNDVNCAMYGELRFGAGRDCSDLLFIAIGTGVGSAVYANGQIVEGATFSAGEI 236 Query: 246 GHIQ----VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 G++ VE G + G FG E + A+ + T K + Sbjct: 237 GYLVDKSDVE-NGYKRVPGEFGAFENKTSGTALTKY----------------GMTPKELF 279 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 +GD A E+I+ +L IA A L N K++I G ++ + ++ I+ N Sbjct: 280 DQYYQGDREAQEIIKDFTLNLAIAIANASCLLNSSKVIIGGGVSRSMVGIIQHIQRLANQ 339 Query: 362 QALKAFRTNLPVVRSELD-HRSAIGAFALVKRAM 394 F + + S+ AIGA A + Sbjct: 340 WT-PFF---VEIESSQFQTDAGAIGAVAYAFEML 369 >UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUP6_ALKMQ Length = 392 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 97/388 (25%), Positives = 174/388 (44%), Gaps = 11/388 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + D +K++N + + +I Q I++ +IA +L+ ++T QLIE GL++E S Sbjct: 8 SQDQIKEINRSNIINMIKQKYEITKHEIAVALKLSIPTITTNINQLIEEGLVEEAGVGNS 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHAL 129 TGGR+ + + ++GV + I L DL++ ++ E + + + + + + + Sbjct: 68 TGGRKPMILKLVENARFSVGVDVSPDKVRILLIDLNNTIIDEASFDYVKDLSFKGVLDEV 127 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 I +F+ +++ + + LPGLVD D + P+I V ++ E ++ ++ Sbjct: 128 KTEIERFMTQNNISKNKILGVGISLPGLVDEDRLILENAPNIGVRDFNFQE-FQDSLQLR 186 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 F+ ++ A AE G + + + + V + G G GII N I+ N GE GH++ Sbjct: 187 VFIENEANIAAYAEKEIGKTVNMRNVVYVSITEGVGTGIIVNQHIYKSSNKKAGEFGHMR 246 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + C+CG GC E A+ A+ + Y+ L T+ I + Sbjct: 247 ISDEPRPCNCGRTGCWELYASKKALSRY--------YEESTGLKVSTLDEIFSEESFNMP 298 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 E I L I I NP+ ++I GE+ + +K +L I N ++ Sbjct: 299 SVKEAIGRYIDCLFIGIENIILGLNPEFVIIGGELGKYEKEMLTLINGRNNMKSSFVEYE 358 Query: 370 NLPVVRSEL-DHRSAIGAFALVKRAMLN 396 VV S L D S IGA L + N Sbjct: 359 GTKVVFSALKDKGSLIGAALLPLEDLFN 386 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 104/388 (26%), Positives = 181/388 (46%), Gaps = 13/388 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + D +K+ N V+++I PISR IA+Q+ ++P +V++I +L E G + E ++QAS Sbjct: 5 DQDFMKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQAS 64 Query: 71 TG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHA 128 G GR++ I +IGV L RH A I D+ VL + + T Sbjct: 65 AGRGRKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETADVTVTR 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + I + I R ++ I V LPG++D D+G +++ + +N GL E L+E + Sbjct: 125 IAETIEELIAECDIDRRRVVGIGVGLPGIIDVDAGIVNFSVQLGWKNVGLAERLKELTGL 184 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V ++++ ALAE G++ ++L+ G G+ +I G I+ G + GEIGH Sbjct: 185 QAVVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSAGEIGHT 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 V+P G C CG GCL+T ++ + TI+ + G Sbjct: 245 TVDPEGMMCDCGKAGCLQTYINIPSLLSEASKI----------KPVRTIEELFAERRAGT 294 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES-CINTQALKAF 367 AS +I+ ++ TI ++++NP ++++GE + + I C + + Sbjct: 295 RWASYLIDRALAYMAITINNVVSMYNPDSVILSGEFLDKFPEVYEEITDLCYSQYIWEPL 354 Query: 368 RTNLPVVRSELDHRSAIGAFALVKRAML 395 + + +VRSEL LV + Sbjct: 355 QDSFSIVRSELHEHGVTIGSGLVAQDRY 382 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 178/389 (45%), Gaps = 3/389 (0%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + N ++LN + V L+ ++GPISR +A S L +V+ I +L++ G +++ Sbjct: 4 ANDKTANNRTPRELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRD 63 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 V S GGR A + + +G+ +G + + D ++ A P R Sbjct: 64 VGT-ESRGGRPARLLEFNDDSAAFLGIEIGVEQTAVAVADARGRLRARLEQPTVLRDPHR 122 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 ++ + + + + L +LPGL++ SG P++ E + + L Sbjct: 123 TVRDIVELLPKVLQLSGVPRKRLRGACAVLPGLIERPSGVCVLAPNLGWERFPVRAELSR 182 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 ++ V + ++ A+AE GA++ + + V G GAG++++GR+F G G GE Sbjct: 183 ALRMQVPVYNLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYSGE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IGH +V G C CG GCLET A+ A+ + + Q + + AA Sbjct: 243 IGHCRVADDGPPCGCGRRGCLETFASVMALRRAAEAASARSPQLAALARPHAVSAVASAA 302 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD A + G L + IA+ +NL NPQ IV+ GE+ A +LL + + A+ Sbjct: 303 LAGDESARAIFHDAGAQLARGIAVLLNLLNPQLIVLGGELLAAPDILLAGVRDGLPRHAV 362 Query: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRA 393 + ++PVV S L + + L+ R Sbjct: 363 RGA--DVPVVASPLGSEAGVLGALLLARE 389 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 113/399 (28%), Positives = 193/399 (48%), Gaps = 14/399 (3%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MT Q G+ ++Q N V + + G +++ +IA + L+ ASV+ I R L G Sbjct: 1 MTTDAQVTPGSQAALRQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEH--YPLP 118 ++ ++ S+ GRRA ++ + + + T+ L + +VL EE Y + Sbjct: 61 VV--SVRETSSNGRRARAVTLQRPPGVLVAIDFTHSRLTVALGNTDGRVLQEESIAYDVS 118 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWG 177 E + + A+ + + ++ ++ +PG VDP +G I + + + Sbjct: 119 EDPVRGVRRAVW-LTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIGDITSMPHWAGFN 177 Query: 178 LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 L+ER + V +D ALAE GA++ E + V+V G GAG+I GR+F G Sbjct: 178 PGAELQERLGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRLFRG 237 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 NGN GEIGHI ++ G+ C CGN GCLET+ + + + + ++ Sbjct: 238 MNGNAGEIGHIGLDERGQVCRCGNRGCLETLVGTPYLLDMLPQQGRVKHG-------ASL 290 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 + +AA +GD +I G LG+ +A+ +N+ NPQ +++ GEI EA ++LL + Sbjct: 291 VDLLEAAQEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDPMRR 350 Query: 358 CINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAML 395 + AL T L +V EL R+A+ GA +V + Sbjct: 351 AMELGALGNALTGLRLVTGELGERAALRGALQVVLDSTF 389 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 115/399 (28%), Positives = 180/399 (45%), Gaps = 12/399 (3%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 + V+ N AAV + P SR IA + L A+VT I +LI + L +E + Sbjct: 17 PHTADHTDVRATNLAAVLGFLRANAPCSRAAIASGTGLNKATVTSIVGELIAQRLARETE 76 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY--PLPERTQQT 124 Q + GR A +V + + AIG+ +G T +D + L H P PE + Sbjct: 77 QTQNHVGRPATLLVLDGSAYAAIGMEVGVRGLTAIAYDSAGGQLLRWHRSGPGPEASPAK 136 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 AL + I + R+++ ++V PGL+D D G + + + L L Sbjct: 137 TIAALAALARRAISAVHSSGRDVLGLTVGAPGLIDHD-GSVVLAAGLGWRDVPLRSDLIA 195 Query: 185 RFK---VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 V +D ALAEH +G D I + G GAG+I +GR G +G Sbjct: 196 ALGRPAFPVMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLRGHHGY 255 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 VGEIGH++++P G C CG GCLE +A AI R+ + + + + Sbjct: 256 VGEIGHLRIQPDGPVCGCGRRGCLEAVAGMPAILARL-----EPADAPETDPQLRTEQLV 310 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + A +GD+ + + VG LG+ I++ ++L +P+ +V+ G + L+PAIE + Sbjct: 311 RRAEEGDTATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGRWLVPAIEQELAD 370 Query: 362 QALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGIL 399 AL VV S H + IGA A + +G L Sbjct: 371 GALVTVSGRCRVVVSTFGHDATSIGAVARSLDRLDSGRL 409 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 105/395 (26%), Positives = 187/395 (47%), Gaps = 20/395 (5%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 ++G+ +L++++NS+ V + G +SR ++A+++ L+ +V++I +LI G+++E Sbjct: 3 PVRVGSKELIREINSSLVLGELR-GGLVSRTELAKRTGLSLPTVSEIVGELIGTGVVEER 61 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 + +S GGRR + + + + IG++L L DL++ ++ + T+ Sbjct: 62 EIASSGGGRRPVLLGLKPDAGYVIGIKLTETRVVAVLTDLNAAIVQRATVAVANDDVDTV 121 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 + + +F + L G++D SG + + + + L LE+R Sbjct: 122 VRTVAAVVKRFTAKVGPVYGVGV----GLAGMIDRASGVVRHATYSDWHDVDLAALLEKR 177 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + V +D+ +L E +FGA + D +V + RG G G++ +GR++ G G GE Sbjct: 178 TGLPVVVDNDVNTLVANEQWFGAGRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGGAGEF 237 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH +V P G C CG GCLE++ AI +I+ A Sbjct: 238 GHTKVAPDGPVCACGARGCLESLIGEPAIL--------------TATGTSSIEQAVDLAR 283 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 GD A V ++VGR LG + +NL NP+ IV+AGE T A +LLP ++ + Sbjct: 284 GGDDAARAVFDHVGRTLGTAVGNLVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQAVFD 343 Query: 366 AFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGIL 399 + +L VV + D + A GA L + L Sbjct: 344 GLQRDLEVVVDDWDDEAWAQGAAGLFLGELFQPNL 378 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 330 bits (848), Expect = 4e-89, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 171/380 (45%), Gaps = 14/380 (3%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 G+ +++ N + I Q+G ++++++A + L+ A+V+ I ++L G+++ Sbjct: 4 KPPTPGSQSSLRESNRTRIIDAIKQFGGLTQVELAGATGLSAATVSNIVKELTTLGVVQT 63 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQ 123 S GRRA + V+ G + L D S +L++ PL + Sbjct: 64 SPSTRS--GRRAQHVTLARTPGLVGAVQFGLRHMRVALADSSGSLLSDHQLPLGADHRAD 121 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 IA ++++ + EL ++V LP V+ SG I + +N + + Sbjct: 122 AGLDRAALLIADMMETFDAESAELQGVAVALPAPVEHSSGLITSPGIMRGWDNVAVAHVM 181 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 ER +V + AL E GA+ + ++ ++V + GA +I NG +F G NG+ Sbjct: 182 SERIGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELFWGANGSA 241 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GE GH +P G+ C CGN GCLET+A + + + RV T+K + + Sbjct: 242 GEFGHTTTDPDGQICRCGNRGCLETVAGGNVLLEAL----------RVSHGVMTLKDMMR 291 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A GD I GR +G A N+FNP+++V+ G++ +LL + I Sbjct: 292 YARDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDPLRETIERF 351 Query: 363 ALKAFRTNLPVVRSELDHRS 382 +L + + +V L + Sbjct: 352 SLPSTAECITIVPGSLGADA 371 >UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=Actinomycetales RepID=D1BAX4_SANKS Length = 410 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 169/391 (43%), Gaps = 4/391 (1%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 ++ + +AV R +R ++++ + L+ A+V+ + ++ + G++ +S G Sbjct: 8 DLRSDSRSAVLRAFFSLRTATRQELSQHTGLSVATVSTLVKEFLTAGVVHVEAVVSSGVG 67 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQQTLEHALLN 131 R + + + +GV + T+FDLS PL E + Q + + Sbjct: 68 RPLEQLRLDPSRGYIVGVDVAETYVETTVFDLSLDPRGTVSVPLDEHQNSPQYVVDGIRL 127 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 A+ + ++ + V LPG V PD G + P+ + + E L + Sbjct: 128 AVHGVLALAGVSTSSVVGVGVSLPGQVQPDLGVSVFAPNWAWHDVRIKELLTAELGMHVH 187 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V + ++++A+AE +FGA ++ D +V + G G+G++ NG + G + N GE GH + Sbjct: 188 VDNPLKAIAVAELWFGAGREHRDLAIVNLGTGVGSGLVINGELVRGVSNNAGEWGHTLLA 247 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 G C CG GC+E ++ + + + + + GD + Sbjct: 248 LDGRLCRCGRQGCVEAYVGVNGMKATLSEIQPDHPALLQQEQRRFVDAVYEGVVAGDPVF 307 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQALKAFRTN 370 E+++ R+L ++ +N+ NP+ +V+ G + L+P + + I AL++ Sbjct: 308 VELVDETARYLAASLGDLVNMINPEHVVLTGWTVARLGDWLIPLVRAKIPDAALRSSVAV 367 Query: 371 LPVVRSEL-DHRSAIGAFALVKRAMLNGILL 400 L V S L A+G L L + L Sbjct: 368 LTVSASSLASSTVALGMSTLTLEHFLAAVGL 398 >UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F498_ACIC5 Length = 402 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 183/395 (46%), Gaps = 16/395 (4%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 +A++ + + +++N + +I PISR +A S L ++V++I QLIE I+E Sbjct: 8 RAELASSETARRINRDILLEIIRARQPISRADLARVSGLQRSTVSQIIEQLIEELWIREG 67 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 GRR +V + L A I + DL+ +VL+ L + Sbjct: 68 AVARLPRGRRPTMLVLNED-VVVLTADLHPRKAAIAVIDLNGRVLSHAELSL-SHDPAKV 125 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 A+L + + ++ K + V LPG VD + ++ + P++ ++ L +AL + Sbjct: 126 ATAILECMRRLRQAHPEKSFR--GVGVSLPGRVDSQTQRLIFAPNLHWPDFDLRQALAKG 183 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 ++ + + + +E +FG Q ++++L+ V G G GI++NG++ G+NG GE Sbjct: 184 LRMPVEMENAANACLTSELWFGRMQGVQNAVLITVSEGIGGGILANGQLVTGQNGMAGEF 243 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GHI ++P G RC CG GC ET A+ A L+ +S + + Sbjct: 244 GHISLDPRGPRCGCGQRGCWETFASCKA-------ALRHYQESSGASRRIAYQDLLALGA 296 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 + + A + R +G+ + + I +P+ ++IAGE+T A ++ PA+ + Q L Sbjct: 297 EKNPHAVGALTEQARQIGRGLRLVIASLSPELVLIAGEVTSAWNLVAPALRKEMEAQWLG 356 Query: 366 AFRTNLPVVRSELDHRSA--IGAFALVKRAMLNGI 398 + D +A GA A++ + + I Sbjct: 357 GTMPRIE---PTFDSDAARLRGAAAMLLQRRASAI 388 >UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FQW3_SACEN Length = 405 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 7/396 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q N+ V N A V I +G +SR+++AE++ L +++ I R L+ GL+ E Sbjct: 7 QGTNLPRVGGFNRAVVLDTIRAHGEVSRVELAERTGLTAQTMSNIVRALMADGLVAENGH 66 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLE 126 STGG+R + + + ++G+ L T L DL+ V +P+ + T+ Sbjct: 67 APSTGGKRRVLLRVVPDAYSSVGLHLDPESITGVLLDLAGGVRLRSRRRVPQDASPATVA 126 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEER 185 AL + Q + ++ + + +PG +D D ++ P++ ++ L + +E+R Sbjct: 127 AALTRTLKQLVRRSGIDESRVLGVGLAVPGPLDADHRRVLGPPNLPGWDDVALADLVEQR 186 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + + +D + A+ E + + V + G G G++ ++ G + N GEI Sbjct: 187 AGMPVVMDNDATAAAIGERWAAGKARRGSFVYVYLGAGVGVGVVLGDQVHRGTSNNAGEI 246 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ G C CG GCLE + AI L+ V D + IC+AA Sbjct: 247 GHVNGGGAGRPCSCGKRGCLEAYCSMRAIVDEWLSATGSPEGDSVSAD---YEEICRAAA 303 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQAL 364 GD+ A ++ LG+ +A +++ + +V+ G + ++++ +E + Sbjct: 304 GGDATAVRLLRQAATKLGQALATVVSVLDVDHVVLGGPALRHVEELVRSRVEKTLAAHVW 363 Query: 365 KAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGIL 399 + V + + + A+GA +LV + L Sbjct: 364 APAVRPVRVRTALIGEDAGAVGAASLVLDHAYSPRL 399 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 326 bits (838), Expect = 7e-88, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 181/393 (46%), Gaps = 13/393 (3%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + Q + ++V+ +N V L+ PISR +A S L ++++ I QLIE + E Sbjct: 6 KRPQGASSEVVRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVLE 65 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 GRR + + IGV + T+ L D + K ++E P + Sbjct: 66 GPTGRLPRGRRPTFLRLN-DDRVIIGVDIRPIQTTVALADANGKFTSQEVMSTPGDPKLA 124 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L L+ AI + + + K+ + I + LPG D S ++ + P+++ + + + + E Sbjct: 125 LTQ-LIAAIKRIKSTCRGKM--IEGIGISLPGRFDHSSNRLVFAPNLKWTDIDIRDPIVE 181 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + + + + + LAE +F +C + ++V V G G G+++NG + G +G GE Sbjct: 182 QTGLDVELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGMAGE 241 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GH+ ++P G C CG+ GC E A+N A + L + + + A Sbjct: 242 FGHVPLDPTGPTCGCGSRGCWEIFASNRAALRYYLE-------TGSTETGLSFTDLLSRA 294 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 ++GDS A + ++ + +LG+ + + + P++IV+ G++T + + IE+ I Q L Sbjct: 295 DQGDSRAEKALDMMAHYLGRGMRMIVAGLAPERIVVVGDLTRSWQRFGSVIEAEIQAQVL 354 Query: 365 KAFRTNLPVVRS-ELDHRSAIGAFALVKRAMLN 396 +V + E G ALV + + Sbjct: 355 PGGVVP-KLVPAFEDGMARLRGTVALVLQKHFS 386 >UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF86_9FIRM Length = 381 Score = 326 bits (837), Expect = 8e-88, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 171/392 (43%), Gaps = 23/392 (5%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 GN +L++ +N+ +V R I +G ISR IA + L A+V+ I + L++RG+I E + Sbjct: 3 TGNQELIRDINTQSVLRTIITHGAISRASIASELGLTKATVSAIVQVLLDRGIIFEAESS 62 Query: 69 ----ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 GR+ I + + + + L + T+ +L +P PE+T + Sbjct: 63 DTAPEGRKGRKPIFLQLNKDCGYVVAIDLATENITLMTANLLGGNCRLTQFPTPEKT-EL 121 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L L I + I++ + L+ I++ + G+V + I ++P+ + V L + Sbjct: 122 LLPLLKERIDRAINALPKTRYGLLGIALGIHGVVHHNK--IIFLPYSSFGDIDFVSRLGD 179 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + V + ++ AL E + D + + + VH G GAGII ++ G+NG GE Sbjct: 180 IYGVPVVMENEANLSALGE--WAHCHDTNEMLYISVHSGIGAGIIMKNQLVKGKNGYAGE 237 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GH +E G C CGN GCLE A+ A+ + S + + Sbjct: 238 FGHTIIEVDGRPCPCGNHGCLEQYASERALFAEL---------SAQKGYPVNAEVYGRLY 288 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +GD A ++ +++ I +N FNP IV+ +T + + I Q Sbjct: 289 RQGDPAAVRAMQQFIKYMSVGINNLLNTFNPDIIVLNSSLT----MCHAGLCDDIAAQLH 344 Query: 365 KAFRTNLPVVRSELDHRSA-IGAFALVKRAML 395 + +V S L + +G L++ L Sbjct: 345 NNMKDYCRLVPSTLQDTAVLLGGVYLIRERFL 376 >UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357A7 Length = 405 Score = 326 bits (837), Expect = 9e-88, Method: Composition-based stats. Identities = 99/401 (24%), Positives = 173/401 (43%), Gaps = 13/401 (3%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE-- 64 A+ N+ VK+ N A + +I +YGPISR +IAE L P ++T LIERGL+ E Sbjct: 3 ARGTNLPRVKKQNEALIKEIIYKYGPISRSKIAEMLSLTPPTITTNVTSLIERGLVYEFA 62 Query: 65 ---VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT 121 D + + GR+ + I +A+GV + + I + DL YP RT Sbjct: 63 ADDSDVEERSLGRKPVKINFVQEAKYAVGVEMNPYHTAICMLDLRGNEKISMRYPPMNRT 122 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 L I + I + +++ + V LPG V+PD G + + + Sbjct: 123 YVEEMDVLARNINKLIQDSGTEPEKILGVGVGLPGFVEPDVGVLRESFKTEWNGKNIARD 182 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L R + + ++ R A+ E FG + + + G + R+ G N + Sbjct: 183 LSRRLDLPVLIENNARVRAIGEEMFGKTLRPDSFAYYLISYGIACPLFVKNRMITGDNAS 242 Query: 242 VGEIGHIQVEPLGERCH-CGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDC 295 GE GH+ V+ G +C CG+ GCLE +A+ AI ++ + G + + ++ Sbjct: 243 AGEAGHMVVDINGPKCETCGHNGCLEELASERAIIKKCKAAARAGVSTMLTELCPDIEGL 302 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 T+K + A D+ +V+E +LG T+A INL +P +++ G + + + + Sbjct: 303 TMKDVLMAEECNDAYVVKVMEEAVMYLGVTLANIINLISPPLVIVDGYMMKVKRNRRQLL 362 Query: 356 ESCINTQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAML 395 E + + + + A G AL + + Sbjct: 363 EET-KKHIFGLNDQEIEIEFIDFNPLTGARGGAALAIKQLF 402 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 157/367 (42%), Gaps = 11/367 (2%) Query: 30 YGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAI 89 GP SR IA L+PA+VT + L+E G++ E GRR I + + A+ Sbjct: 25 EGPRSRADIATVIGLSPAAVTFVVADLLEEGIVIEGKTVPGLTGRRPIPVDINYEHALAV 84 Query: 90 GVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIA 149 G +L DL++ +A L + L + + + + R +L Sbjct: 85 GFKLMVDSVECVATDLATNPVAAMRVSLGGHDPDKVADLLASTVPELVKLAGRPNAKLAG 144 Query: 150 ISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGAS 209 I + +PG+++ + + +N L + R V ++ D + A+A+ FG Sbjct: 145 IGISMPGVINHEQTACVRSYRFKWDNVPLASLVASRVHVPVWLEDDTNAYAIAQQLFGLG 204 Query: 210 QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIA 269 + + ++ V G ++ +G+++ G NG G+ GH E G C CG GCL Sbjct: 205 RQHRNMAVLAVGVGISCALVIDGKLYRGANGAAGKFGHTLYEENGRLCECGKRGCLMAYH 264 Query: 270 ANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIA 329 + ++ +R + ++ + + A GD+ A ++ GR +G +A Sbjct: 265 SEISMLRRWREATGR--------EELGLPELSAALASGDTTALALVADSGRGIGTALANL 316 Query: 330 INLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFAL 389 +N+ +P+ IV GE L + ++ + FRT P++ D+ A GA AL Sbjct: 317 VNITDPEVIVAGGEAVSLGDPFLTPLREALSART---FRTAPPLLPDWEDNSWARGAAAL 373 Query: 390 VKRAMLN 396 V + + + Sbjct: 374 VTQKIFD 380 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 167/389 (42%), Gaps = 17/389 (4%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 V +++ N A + R + GP SR +++ + L+ ASV+ +T LI G+I E S Sbjct: 8 TVRDLRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGIIVEAGLVES 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHA 128 GGR + + + +AIGV +G + LFDL A+ YPL + Sbjct: 68 DGGRPRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADYPLRPGRHDVDLVVRH 127 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 +L+ I + + ++ + + +PG+V+ + + + L L + Sbjct: 128 ILSGIDAVLAAGGVDPARVLGVGIGVPGIVESGPEALIHAQTFGWDAVPLGTLLRAGTSL 187 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 +V + +++ AE +FGA + +I+ + G GA II++G + G N + GE GH Sbjct: 188 PLYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRGANSSAGEWGHT 247 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++ G C CG GCLE +I R G + + + + + G Sbjct: 248 KIMMGGRACRCGGRGCLEAYIGAESILDRA------GLSAEIADEQA---VLAELVRSGG 298 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCINTQALKAF 367 VI+ +LG +A INLFNP++IVI G + L I +L Sbjct: 299 P----VIDETADYLGAGLANLINLFNPERIVIGGWAGLLLGRHHLTRIRRSAADNSLTQP 354 Query: 368 RTNLPVVRSELDHRS-AIGAFALVKRAML 395 +V L + A+GA LV L Sbjct: 355 YGTASIVLGRLGPDAVALGAATLVVEEFL 383 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 179/399 (44%), Gaps = 10/399 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 V +++ N + + I ++GP+SR ++ ++ L+ ASV+ + +L++ G+++E S Sbjct: 7 TVRDMRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAGSVES 66 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEHA 128 GGR + + + +G +G + LFDL+ V+A P+ P+ + + Sbjct: 67 DGGRPRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSPIETPKPAPELAVRS 126 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 +L + + I ++ + V + G+V+ + + + + + L L ++ Sbjct: 127 VLQGLDEVIAGAGVAKERVLGLGVAVAGVVEGPADAVVHAQTLGWDGVPLGAMLAAGTEI 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V + +L AE +FGA + D+++ V G GA +++ G + G + GE GH Sbjct: 187 PIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTRSSAGEWGHT 246 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG- 307 + G +C CG GCLE A+ +R + DD + + A G Sbjct: 247 TIMYGGRQCRCGALGCLEAYVGAEAVLERYREAGGPSAAT----DDEEAEFVALLAAVGT 302 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIV-IAGEITEADKVLLPAIESCINTQALKA 366 +A++V+E +LG A +NL NP++IV + LP + + AL+ Sbjct: 303 SEVAAKVVEDTIGYLGAGFANLVNLVNPERIVLGGWAGLLLGERYLPQLREAVGRHALRR 362 Query: 367 FRTNLPVVRSELDHRS-AIGAFAL-VKRAMLNGILLQHL 403 + + EL + A GA L V R + G + + L Sbjct: 363 PYAQVAIELCELGSDAVARGAATLPVLRLLREGGVTRKL 401 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 98/412 (23%), Positives = 177/412 (42%), Gaps = 28/412 (6%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 QA + L + + + + +SR + + LA +V+ + LI GL Sbjct: 5 AGDTQAAPQTPINLHNLGRVRILQALTSHARLSRADLVRHTGLARTTVSSVIFDLISAGL 64 Query: 62 IKEVDQQASTG----------------GRRAISIVTETRNFHAIGVRLGRHDATITLFDL 105 ++E GR + + E +A+G+ +G + D+ Sbjct: 65 VRESPDVRENSDTAAAAAAGAAPGQRTGRPPLLLRLEPEAAYAVGLDVGHDHVRAIVTDV 124 Query: 106 SSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGK 164 + L + + + IA+ + +++ + + + VD +G Sbjct: 125 VGTPRWDRTEALAVDDDPRRALDTAVRLIAEAVKDTAVPPHKILGLGLGIACPVDKTTGG 184 Query: 165 IHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRG 223 +H + + L ER + + +D + LAE FGA+++ + + VR+ G Sbjct: 185 LHAEGIMPGWVGTRPADDLAERTGLPTQIINDANAGVLAERRFGAAREATNVVYVRLAAG 244 Query: 224 TGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283 GAG++S GR+ +G +G GE+GH+ VE G C CG+ GCLET+A+ AAI Sbjct: 245 IGAGMMSEGRMLLGHHGLAGELGHVMVELNGAVCRCGSRGCLETVASPAAI--------- 295 Query: 284 QGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE 343 G +R + + +GD A V+E G +G+ ++ A+ L NPQ +VI G+ Sbjct: 296 AGLLARSWGQPADSIDLPELLRRGDRGALRVVEDAGEAVGRALSAAVQLLNPQLVVIGGD 355 Query: 344 ITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAM 394 + EA + LL I + + + L +V S L + + GA ALV ++ Sbjct: 356 LAEAGEALLEPIRRTLRRGTMGSLNQRLRIVPSTLGDSAGVRGAAALVLDSV 407 >UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6LW15_CLOB8 Length = 382 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 165/387 (42%), Gaps = 12/387 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N +K+ N + L+ + I+++ I+ ++ +V+ +L G++++V S Sbjct: 5 NHSKIKETNRKKIIALLLKKNEITKLDISRILDISITTVSTNITELKSEGIVEDVRSLES 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 TGGR+AI+I ++IGV L + I+L ++ KV+ + + + L Sbjct: 65 TGGRKAIAIKLNENCRYSIGVALTPNHIKISLVNIKKKVIESMRVRHNSDGIENIINLLN 124 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 I + Y L+ I + LPG VD G I Y + +++ L E E + Sbjct: 125 ENIDLLMKKYNLCSANLLGIGISLPGTVDFKEGIIKYSYLLGAKDFNLKEKFE-YLDIPV 183 Query: 191 FVGHDIRSLALAEHYFGASQDC-EDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 +V ++ A E F +D + + V + G G GII NG+I+ G N + GE+GH + Sbjct: 184 YVDNEANLSAYYE--FLNKRDILRNLLYVSITEGLGLGIIINGKIYRGDNNSSGELGHTK 241 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + G++C CG GCLE + ++ Y + I + N+ D Sbjct: 242 IAIDGKKCKCGARGCLEAYTSMNSLI--------DSYNEANSSNISDIDEFEERYNQNDK 293 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A +V+ + L ++ + +F+P IVI G+I + ++ + L Sbjct: 294 DAHDVLNDYLKTLSLGLSNLVMIFDPSSIVIGGDINNLLNDKIDMLKKEVYKDNLFTNEN 353 Query: 370 NLPVVRSELDHRSAIGAFALVKRAMLN 396 N + + +GA + L Sbjct: 354 NCSISIASFKESYLLGAAMMPIEEFLE 380 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 111/393 (28%), Positives = 189/393 (48%), Gaps = 15/393 (3%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G A G+ +++ N + + + Q+G ++++++A + L+ A+++ I ++L+ G+++ Sbjct: 3 GRAATSGSQSSLREANRSLIVDTVKQFGGLTQVELAGATGLSAATISTIVKELLGAGVVE 62 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 S GRRA + R A GV++G + L D S V+AE+ PLP E Sbjct: 63 VRPTSRS--GRRAQMVTLARRVGLAAGVQVGHRSMRVVLGDFSHTVVAEQSLPLPHEHLL 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEA 181 T IA ++ + EL+ + + LP VD +G I + + L Sbjct: 121 DTGLDRASLLIADLLERVGSPIDELVGVGLGLPAPVDGATGMISVRGVMRGWDGEHLAHV 180 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 + +R V +D ALAEH GAS++ DS+ VR G GAG++ NG ++ G G Sbjct: 181 MSKRLARPVHVDNDANLGALAEHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRGYAGT 240 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GEIGH+QV+P G C CGN GCL+T+ A+ + + T++ + Sbjct: 241 AGEIGHVQVDPQGAICRCGNRGCLDTVVGADALLASLRA----------SHGNLTLRDVI 290 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 A GD + ++ G +G +A NPQ +V+ GE+ E ++LL + + Sbjct: 291 ALATDGDRGCARLVADAGEAIGTVVAGLCAAVNPQVVVVGGELAETGEILLGPLRDAVRR 350 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 L+ L VV +EL R+ +GA V ++ Sbjct: 351 GVLRNQIAPLEVVAAELGPRAEVLGALVHVLQS 383 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 105/395 (26%), Positives = 182/395 (46%), Gaps = 14/395 (3%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 T G+ ++Q N + + GP+++ +++ + L+ A+V+ + + + + GL Sbjct: 50 TKSLPRNPGSQSALRQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGL 109 Query: 62 IKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ER 120 + +S GRRA S+ + A+G+ +GR + + L +V+AE LP Sbjct: 110 VSTAPTTSS--GRRATSVRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLPLGH 167 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLV 179 A + + + ++ V +PG +D +G + + ++ Sbjct: 168 LAVEGVKAAADLLQGLLHDAGLPASAVVGAGVGIPGPIDSRTGTVIQGAILPEWVGINIL 227 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 E LE+ KV +V + ALA+ +G ED + V++ G GAG+I G + G Sbjct: 228 EMLEDALKVPVYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLILGGSPYYGNI 287 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGH + G C CGN GCLET+A+ A + + + SR T + Sbjct: 288 GVTGEIGHATISEQGLICRCGNRGCLETVASTAIMIELL---------SRGAPAPITTED 338 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 I + A + DS VI+ G+ +G+ IA NL NP+ IV+ G + E +VLL I + Sbjct: 339 IIRLAREKDSATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGEVLLEPIRRGL 398 Query: 360 NTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 A+ +V S + +R+ A+G ALV + Sbjct: 399 IRHAVPVVGETTHLVMSSMGNRAEALGGAALVFQH 433 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 192/395 (48%), Gaps = 12/395 (3%) Query: 11 NVDLVKQLN---SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 N+ + N + + G + ++ ++ ++ ++TK+ ++L++ ++ ++ + Sbjct: 15 NLKGISHKNNLFKRNIIAHMAVNGECTLSELTKELHISVPTITKLVQELVQENIVSDLGK 74 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY-PLPERTQQTLE 126 + GGRR + + GV +GR + + + DL + ++ EE + + Sbjct: 75 VETPGGRRPNVFGLASSAIYFAGVNIGRDNMSFLITDLHNNIVKEELLTDFELQDRPQCL 134 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + + IA FID+ + +++ + V + G V+P +G+ + + L + +E+R Sbjct: 135 EKICSNIAHFIDTCGVERAKILGVGVSVSGRVNPTTGRSYR--YFTSSEQSLRDMIEQRI 192 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + + +D ++ AE+ S+D D + + + RG GI+ NG+++ G++G GE G Sbjct: 193 GIRVLLENDSQARCYAEYTNSKSKDEMDVLYLHLGRGLAIGIVMNGKLYYGKSGFAGEFG 252 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTIC 301 HI C CG GCLET + AIEQ+ L+ QG + + + + I Sbjct: 253 HIPFFDNEIICSCGKKGCLETEVSGIAIEQKFGRLISQGVNTILREKYNKHEAIHVDEII 312 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 AA D+L+ E+IE VG GK +A IN FNP+ +++ GE+ EA L+ ++S N Sbjct: 313 DAAKHDDNLSIELIEEVGEKAGKAVAFLINTFNPETVIVGGELAEAGDYLMLPLKSATNK 372 Query: 362 QALKAFRTNLPVVRSELDH-RSAIGAFALVKRAML 395 +L + S++ SA GA L++ +L Sbjct: 373 YSLNLVYKDTKFRLSKMGKTASAWGAAMLIRNQVL 407 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 323 bits (828), Expect = 9e-87, Method: Composition-based stats. Identities = 99/315 (31%), Positives = 161/315 (51%), Gaps = 11/315 (3%) Query: 88 AIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLRE 146 A+GV LG + L D KVL + P E+ + + + + + I ++ K+ E Sbjct: 4 AVGVDLGGTKINVLLVDDQGKVLGRDKQPTESEKGKDHVINKIKSMIDNVLNQAGLKITE 63 Query: 147 LIAISVILPGLVDPDSGKIHYMPHIQ--VE-NWGLVEALEERFKVTCFVGHDIRSLALAE 203 + I + PGL+D D Y P++ + L + LEE F V ++ +D+ +A AE Sbjct: 64 IEGIGIGFPGLMDRDKKTTLYAPNLGDEWKKEVLLGKELEETFNVPVYLENDVNLIAWAE 123 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFG 263 GA + + I V + G G+GI+ NG+++IG +G GE GH V P G C CGN G Sbjct: 124 WLVGAGRGTKTMICVALGTGIGSGIVLNGKLWIGAHGMAGEFGHTTVLPDGPVCGCGNRG 183 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVIEY 317 C+E IA+ IE+ ++L Q S + LD+ T+K I +AA +GD LA ++ Y Sbjct: 184 CIEAIASGTGIEKYAKSILPQYPNSLIWELCNGNLDEVTVKIIYQAAERGDKLAVDIFNY 243 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 G +LG +A +++ +P+KIVI G + + + ++ + L +FR + +E Sbjct: 244 AGYYLGIALANYVHIIDPEKIVIGGGVANVREYIGKPMKEEFYKRVLPSFRDKVTFSWAE 303 Query: 378 LDHRS-AIGAFALVK 391 L + IGA LV Sbjct: 304 LGEDAGGIGAALLVL 318 >UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZML3_9FIRM Length = 410 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 179/387 (46%), Gaps = 18/387 (4%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG-GR 74 KQ N +++LI +RI+++ ++ LA +VT I + +E+G++KE +++ + GR Sbjct: 35 KQFNRGLIFQLIATGTCNTRIELSRRTGLAKTTVTNIVAEFMEKGIVKECEEELTEVCGR 94 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 I + + IG+ + R + L L ++ E E T L I Sbjct: 95 NPIILKVADQAPKIIGILVFRTNIQAVLCSLDMQIFRTETIEFGELTGDILIQNAFELID 154 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVG 193 + ++ + ++ I + G VD +G I P V++ + EA+++++ + + Sbjct: 155 RMMEE----EKNILGIGIASIGPVDIRNGIILNPPRFYGVKHVPIKEAIQKKYNLPVYFD 210 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 HD ALAE FG + +D +L+ V G G+G + G +F G E+GH+ + Sbjct: 211 HDNNCAALAEKLFGIGKAEQDFLLLAVSNGIGSGFVCGGEVFHSHRGFETELGHVSINCK 270 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G +C CGN GCLE A++ + +++ + + + L I + Sbjct: 271 GLQCSCGNRGCLEMYASSYVVREKLKKI------TGLNLPYADYFKIHDR-----PEVED 319 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 ++E + + + + IN+ P+ IV+ + + + + +E IN + + N+PV Sbjct: 320 ILEEMIQDISAGLVSIINMLQPEMIVLGYDGIDWPEDYVKKLEILINDRKIAQDGWNIPV 379 Query: 374 VRSELDHRS-AIGAFALVKRAMLNGIL 399 ++ ++ +GA ALV ++ G L Sbjct: 380 KKAYFGKQAQLVGAAALVVNSIFKGEL 406 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 92/382 (24%), Positives = 178/382 (46%), Gaps = 7/382 (1%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 + + + G + + + L+ VT LI G++K+ + STGGRR Sbjct: 23 KKIIISYLAEKGHATIADLCREMNLSIPKVTTSVTMLITEGVVKDFGKVGSTGGRRPNIY 82 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLA-EEHYPLPERTQQTLEHALLNAIAQFID 138 + +GV + I L DL ++ ++ P + + L I +FI Sbjct: 83 GLVPDSGFFLGVDVKHQHINIGLIDLQKVIIKITKYIPYQLINNKDALYELCRLIKEFIY 142 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRS 198 + +++ + + L G ++ ++G + + + L LE+ + V +D R+ Sbjct: 143 NTSIPKYKILGLGINLSGRINHETGYSYNFFNFYED--PLSTILEKELGIKTMVENDSRA 200 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCH 258 +A E G ++ ED + + + G G GI+ N +++ G++G GE+GH+ + C Sbjct: 201 MAYGEFSAGVVKEEEDVLFLNLDYGIGMGIMLNKKLYYGKSGFAGELGHVPLLNNEIICQ 260 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRV---PLDDCTIKTICKAANKGDSLASEVI 315 CG GCLET A+ + + ++ G + + L ++ I +AAN D L+ E++ Sbjct: 261 CGKKGCLETEASGQGLIRMFKTRVEAGSTTTIDKNKLGQLQVQDIIRAANNDDVLSIELL 320 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 +G LG+ IA+ IN+FNP+ IV+ G + E + + I+S +N +L + + Sbjct: 321 AKMGEILGRGIAMLINIFNPELIVLGGLLAETGEYIQLPIKSAVNKYSLSLMNNDTKLKL 380 Query: 376 SELDHRSA-IGAFALVKRAMLN 396 S+L + IG+ L++ +L Sbjct: 381 SKLGEEAGVIGSCLLIRNKLLE 402 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 97/394 (24%), Positives = 177/394 (44%), Gaps = 14/394 (3%) Query: 16 KQLNS----AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 + LN+ + V I G ISR+ IA+ + L A+V+ + R+L++ L+ E+ + ST Sbjct: 6 RTLNTTGSTSVVLDAIRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLVIEIGRAEST 65 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALL 130 GG+ + + +A+GV L T + +L+ +A P P + + + Sbjct: 66 GGKPRVLLELNPTARYAVGVHLDHGAITYAVTNLAGAPVARLARPGPGNASPADVVIRMA 125 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVT 189 + I ++S +L+ + ++ PG + +G P ++ E++ L L + ++ Sbjct: 126 DEINMLVESIGIARDKLLGLGLVSPGPLSSRAGMHLTPPFMRSWEDFPLDTQLADVAQLP 185 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 + +D + A+ E++ G +Q E + + G GAGI+ NG + G +GN GEIGH Sbjct: 186 VLLENDATAAAIGEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTSGNAGEIGHTC 245 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRV----LNLLKQGYQSRVPLDDCT--IKTICKA 303 G C CG GC E +A AA+ + + T I +A Sbjct: 246 ANIDGPECWCGARGCFEALAGPAAVVNEAYSDPRIVTAAALDTLGDHTPITQRFAAIARA 305 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPAIESCINTQ 362 + GD+ + +++E R++G NL + + +V+ G A + +PAI + Sbjct: 306 SRMGDTPSRQLLERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYVPAIRDTLAAS 365 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML 395 + V S+ + AIGA ALV +A Sbjct: 366 FFARDNHAVHVQLSQSAETAPAIGAAALVLQAQF 399 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 104/376 (27%), Positives = 178/376 (47%), Gaps = 5/376 (1%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 VD K V + G + + + SVT + +LI+ + + + Sbjct: 18 VDYKKNQKQRKVLAHLYSEGTCTLAHLTRMLHSSVPSVTSLVEELIDNQWVTPIGTATGS 77 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GRR + T++ + + + HD I ++ KV+ Y L + +L++ Sbjct: 78 NGRRPVLFGLNTKSHYVAVLDVSTHDTKILFMNVQRKVIFRGDYDLRLNDNPSFLTSLVH 137 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + + + +LIA+ + +PGLVD G ++ L + L + Sbjct: 138 YFHNALADSEISIDDLIAVGISMPGLVDARRGLNLTYKNLHQTGESLPQWLSAELNKPVY 197 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 + +D ++ L E FG +Q + + + + G G GII NG +F G +G GE+GHIQV+ Sbjct: 198 LINDTKATVLGESRFGGAQGKKQVLAINIDWGVGLGIIVNGEVFQGASGFAGELGHIQVD 257 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTICKAANK 306 P GE C CG GCL TI + +A+ +R + G S++ +D I + AAN Sbjct: 258 PDGELCFCGKIGCLSTITSASALVKRAQTDILAGQVSKLATFRDHVDQIDIDEVINAANS 317 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 GDS A +++ G LGK +AIAI+LFNP+ IV+ G + +A +L IE I+ L Sbjct: 318 GDSYAIDILHETGYQLGKGLAIAISLFNPEIIVVDGVLFKAAAFILNTIEQAISKYCLSD 377 Query: 367 FRTNLPVVRSELDHRS 382 FR ++ + ++L+ + Sbjct: 378 FRNDMTIEVTQLNGTA 393 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 100/397 (25%), Positives = 179/397 (45%), Gaps = 22/397 (5%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 I N ++++ N V I P+SR ++A+Q L A+++ I ++L+E+ I+E+ Sbjct: 16 SIANQEMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGS 75 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 ++ GR+ I + A+ + + L +L +V +E +P Q L Sbjct: 76 AQTSMGRKPILLEFNKAYGFALSLEIQPQQIIALLTNLKGEV--QEIKKIPFCPQDNLLQ 133 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L + +I ++I +S+ + G+V +I + P+ + GL L+E F+ Sbjct: 134 HLEQILNFYIRENTAFKNKIIGVSIGIYGVV--QKNEILFTPYYPLPKSGLGTHLQETFQ 191 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + FV ++ L E F ++ I + VH G G GI+ NGR++ GR+G GE GH Sbjct: 192 IPVFVENEANLSVLGEAAF--HHKYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGEFGH 249 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 + P G+ C CGN GC E A+ AI + Y +R ++ TI K + Sbjct: 250 TILFPDGKPCPCGNQGCFELYASQRAILE--------NYAARQKKENVTISEFLKDYDAN 301 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 LA E+++ +++ I IN FN IV+ + +P I I+ Sbjct: 302 LPLAHEMMDLFVKYISIGINNIINTFNTDIIVLNSAFSNH----IPDINQRISEYLAGHQ 357 Query: 368 RTNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQHL 403 + ++ S+L + S +G + L+ + HL Sbjct: 358 NRDCNIIPSKLGNLSCLLGGARISVENFLD---IHHL 391 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 160/380 (42%), Gaps = 13/380 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS---TG 72 + V + I G ISR IA +PA+VT L++ GLI+E + S Sbjct: 14 RDATRLRVLQCIRSAGTISRTDIARALDSSPATVTSACGALLDAGLIREERRMPSENVQR 73 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQQTLEHALL 130 GR + + F G+++ R + + D + PL L + Sbjct: 74 GRPRVMLQINGEAFAVAGLKVAREAIVVMIVDFRGDEIGSFVSPLEASCMDPDGLVQEVR 133 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 A+ + + +S+ +PG V+ ++G +H+ + N + Sbjct: 134 RALDAACARHGLDTARIAGLSLGIPGFVNGETGFMHWSSSVTERNVDFAPLFRKHLPCPT 193 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 F+ +D +A AEH FGA + + ++V + G G GII NG ++ G G E+GH++V Sbjct: 194 FLDNDANLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGELYRGERGCGAELGHMKV 253 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 + G C CG GCLE + A+ + + +I+ I AA GD L Sbjct: 254 QFGGALCQCGQRGCLEAYVGDYALVR-------DTSTGQQSDAAKSIQDILHAARNGDRL 306 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 A EV++ + LG +A +NLF+P+ IV+A D A+ + + ++ Sbjct: 307 AREVLDRASQILGVALANLVNLFDPEHIVLARSRPPFDHPYTEAMLTSLRRNTVQVDAPL 366 Query: 371 LPVVRSELDH-RSAIGAFAL 389 + LD A GA AL Sbjct: 367 PEITVRNLDEMMWAKGAAAL 386 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 108/387 (27%), Positives = 190/387 (49%), Gaps = 8/387 (2%) Query: 15 VKQLNSA--AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +K+LN I ISRI+++ +L PA+VTKI ++L LI+ + STG Sbjct: 1 MKKLNITDYKALEEIRTNNKISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTG 60 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR S+ R +G+ G L L ++L + R+Q+ + L Sbjct: 61 GRPEKSLKINHRYKMILGINFGPEFIETALSYLDGELLCMKRRNFYIRSQEKILRILFEE 120 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I ++ Y +++ I + L G V+ + G + PH +N + E +E+++ + + Sbjct: 121 IDNVLEEY--SKDDILGIGLALHGTVNREKGISIFSPHFGWKNLNIQELIEKKYSLPVII 178 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ-VE 251 +D+R++A+AEH FG +Q+ ++ +++ + G G I NG+ + G + + GEIGHI VE Sbjct: 179 DNDVRAMAIAEHEFGRAQNTDNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITAVE 238 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 RC CG +GCLE +++ AI+ +VL L++ Q +V + T + I K A + Sbjct: 239 NSSRRCSCGKYGCLEAESSDEAIKNKVLTELEK-IQEKVDISLKT-EDIYKMAAEKKEPY 296 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 V+ +GK + +N+ N + +++AG I D + + I L +L Sbjct: 297 FSVVRNSSYEIGKAVGNLLNILNIKLVIVAGRIVNTDSLFFVNLNKGIKKNILDGLEKDL 356 Query: 372 PVVRSELDHRSAI-GAFALVKRAMLNG 397 V ++L I GAF+LV + G Sbjct: 357 HTVPAKLYDSIGIYGAFSLVTTNLFKG 383 >UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PW32_CATAD Length = 396 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 168/386 (43%), Gaps = 5/386 (1%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 +++ N V R ++R +A Q ++ A+ I +L GL+ E S GG Sbjct: 8 DLRRANRVEVMRSFYGGRTLTRGDVAAQLGVSVATAGTIIGELTAAGLLAETQSPRSGGG 67 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHALLN 131 R A + + +GV L +FD + + P+ + ++ +++ Sbjct: 68 RPASQLTMRAGAPYLVGVDLAETYVIAEIFDQAMTRVGHFQTPVAPTDDDPDSVVGHVVD 127 Query: 132 AIAQFIDSY-QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 ++ I + ++ + V LPG VD + G + P+ +R + Sbjct: 128 SVQGVIAALDGVSAADVAGVGVSLPGQVDREGGVSVHAPNWGWHGVPFTSLFHKRCDLPV 187 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 + + ++++ LAE FG + D +D+++V + G G G+++ GR+ GR GE GH + Sbjct: 188 LLDNPLKAITLAEMMFGEAGDHDDAVVVNLGTGVGLGVVAEGRLLRGRTNTAGEWGHTIL 247 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 G CHCG+ GC+E AA+ + ++ T+ + +A D + Sbjct: 248 VADGLPCHCGSRGCVEAYVGAAALLDLLTDVDPDSPLLVPGDQAATVARLAEAVASADPV 307 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAFRT 369 A +E R LG +A A+N+ NP+ +V+ G ++ A + LL A+E + +L Sbjct: 308 AVATLERFARPLGMALANAVNMLNPELLVVGGWVSAAFGEPLLAAVEPVVKQFSLAVPYD 367 Query: 370 NLPVVRSEL-DHRSAIGAFALVKRAM 394 + + S + D+ ++G L Sbjct: 368 AVTLAASRIADNPVSLGMAVLAFETF 393 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 99/400 (24%), Positives = 180/400 (45%), Gaps = 13/400 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 A V L+ +R +I +S L VT+ QL+ GL++E S+GGR + Sbjct: 25 LATVLDLVRSGAARTRPEIGRRSGLGRTVVTQRVNQLMACGLLEEGALGPSSGGRAPREL 84 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFID 138 + LG + + DL+ VLAE + + + + + +D Sbjct: 85 KFRAHAGVILAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLERVEEVLDELLD 144 Query: 139 SYQRKLRE----LIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVG 193 + + + + + + LPG V+ +G+ P + + + + + L R+ +V Sbjct: 145 QVRAEQNDPDLTVWGVGIGLPGPVEFATGRPSAPPIMPGWDGYPVRDRLARRYNTPVWVD 204 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +++ ++AL E G+++ D + V++ G GAG++S G + G G G+IGH V Sbjct: 205 NEVNTMALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTLHRGSQGCAGDIGHAAVSDE 264 Query: 254 GE-RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKG 307 E C CGN GCLE A AA+ + L+ ++G + T I +AA G Sbjct: 265 TEVVCRCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLADTGTITAADISRAAQSG 324 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D + E++ GR +G +A ++ FNP ++I G + A +LL A+ + ++L Sbjct: 325 DRTSVELLTRAGRFIGGLLATLVSFFNPALVIIGGGVAGAGDLLLAAVRETVYRRSLPLA 384 Query: 368 RTNLPVVRSELDHRSAI-GAFALVKRAMLNGILLQHLLEN 406 L ++RS L+ R+ + GA +V + L + Sbjct: 385 TRELRIIRSTLNDRAGLVGAAFMVIDELFTPERLARWVTE 424 >UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9KEZ9_BACHD Length = 388 Score = 320 bits (822), Expect = 5e-86, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 162/385 (42%), Gaps = 15/385 (3%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +K++N A+ I + ISR +++ + L +V+ L+E LI E S+G Sbjct: 7 TFIKKMNRRAILEKIIEKQEISRSDLSKITNLNKVTVSSQVASLLEEHLIIEKQYAESSG 66 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I + +G+ L T L +L V+ +E + L + + +++ Sbjct: 67 GRKPILLTLNENAAFTLGIDLDIKTLTFMLCNLKGAVIKKEQWKLANVDFDDVVNEMISL 126 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I F+ ++ I + + G+VD D I + P N + + +E+ + V Sbjct: 127 IQSFLKDIPASKYGVVGIGIGIHGIVDNDE-TIAFTPGHHWSNVNVKQPIEQAVNIPVVV 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 + ALAE+ + + ++ + + G G G+I + I+ G +G GE+GH+ + P Sbjct: 186 ENSTNLCALAENVV-SDHEADNLLCISSFSGVGMGLIVHNAIYKGFHGYAGEVGHMIIVP 244 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G+ C CGN GC E A+ A+ Q + K+ + + GD Sbjct: 245 EGKPCRCGNKGCWELYASEKALYQEISESTKR--------EHVDRDVVLALIEAGDEETL 296 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 + ++ + + IN +NP+ IVI+ + LP IE I + Sbjct: 297 KKLDQFIYYFSLGLNNIINSYNPETIVISSGLM----PHLPNIEHKIQSHLHSKISHYKT 352 Query: 373 VVRSELDHRS-AIGAFALVKRAMLN 396 + S L + A+GA + + L Sbjct: 353 LKISNLGKEACALGACFIGIKQFLE 377 >UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus faecium 1,141,733 RepID=C9BHD6_ENTFC Length = 386 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 180/391 (46%), Gaps = 19/391 (4%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE--VD 66 I + +++LN A + + I + + R ++A + L ASV+ IT++L++ LI E V Sbjct: 2 ISSKYTIRELNQATLLKTIIEKKEVFRAELAAATGLNKASVSDITKKLLDDQLIVETRVG 61 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 ++ GGR+ I + ++ A+ +G + L + VL+ + Sbjct: 62 DASTAGGRKPIMLTFNPQSATALSFDIGYNYLEGMLSYIDGTVLSSISKRRISIDATNVF 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + +I Q I ++ +++ + G+V D + P+ + L + L + + Sbjct: 122 DHIQESIHQLIRDLPETPHGIVGMTIGIHGVVFEDH--PIFTPYYDLHKIDLQKELADHY 179 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 ++ ++ AL E+ F S ++ + + +H G G GI+++G++ +G++G GE+G Sbjct: 180 DFPIYLHNEANLAALGEYTF--SSHYQNLVSISIHSGIGCGIVASGKLQVGKHGKAGELG 237 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H + P G C CGN GCLE A++ A+ + L LD + K Sbjct: 238 HSILYPDGRPCPCGNSGCLEQYASSKAVYEEFARL--------KGLDYVNSDILTDYVKK 289 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 GD+ A+ +++ L I I +++P IVI ++ E + ++ I + + +Q Sbjct: 290 GDTDATALLKKNAALLSIGINNIIMMYDPDVIVINSKLYEKNPQMIEQIHANLTSQ---- 345 Query: 367 FRTNLPVVRSEL-DHRSAIGAFALVKRAMLN 396 F ++ V + L + GA A+ + LN Sbjct: 346 FTKDILVRNTRLKGNAILYGALAVTAQHFLN 376 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 86/313 (27%), Positives = 159/313 (50%), Gaps = 8/313 (2%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLR 145 + +GV LG L D K++A++ P R ++ + ++++I + Sbjct: 4 YYVGVDLGGTKILTALADARGKIVAKKKLPTEARKGEEKVIQNIVSSIDAVLQEKGLSRE 63 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 ++I + V PG ++ G I+ P++ N + + LEE + + +D + AL E + Sbjct: 64 DVITLGVGSPGPLNTQEGIIYLAPNLGWRNVHIKDILEEETGIPVILENDANAAALGEKW 123 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 FGA QD ++ I + V G G GII N +IF G N GE+GH+ +EP G C CGN GC Sbjct: 124 FGAGQDVDNLIYITVSTGIGGGIIINKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRGCF 183 Query: 266 ETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVIEYVG 319 E +A+ AI + +K+ + + + I +AA +GD +A ++ + G Sbjct: 184 EAVASGTAINKMGREAVKENKATLLMELSGGDPEKIDGSLIARAARQGDEVARKIWDKAG 243 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 +LG +A +N+FNP+ I++ G + A +++ ++ + AL++ ++ + ++EL Sbjct: 244 YYLGIGLANLLNIFNPEMIILGGGVMNAGDLIMEPMKKSLKDHALESAFNSVEIRQAELG 303 Query: 380 HR-SAIGAFALVK 391 + IGA A+ Sbjct: 304 NDTGVIGAVAVAM 316 >UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5EFJ1_9FIRM Length = 383 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 170/391 (43%), Gaps = 17/391 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 +I ++ N + + I ISR +I+E++ L A+V+ I ++ + L++E Sbjct: 2 KISQTKDIRSANRLTIIKHILNKKQISRARISEETGLNKATVSTIVKEWMSLKLVEETTM 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S+GGRR I + + + I + +G + L DL++++++ + P+ ++ + Sbjct: 62 GDSSGGRRPIILTLAAKAGYCIAIDIGARRLGLILTDLNNEIISRQSIPIEKQAFSHVYQ 121 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + AI + I LI IS+ + G++D D G I ++P +Q N + LE+R+ Sbjct: 122 QIYIAIDRMIREIPPCPYGLIGISLAVRGIIDLD-GVIRFIPKLQWHNIDIKSLLEQRYH 180 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 V ++ +D A E + + + G+ISNGR+ G G +GH Sbjct: 181 VPVYIDNDGNLAASMESRLHPQYEELTVLCLT--DVISCGMISNGRLIRGYLGFANAVGH 238 Query: 248 IQVEP-LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 + ++C CG +GC E ++ + L+ PL+D + K Sbjct: 239 HTINIQETKQCSCGKYGCWEQYCSDQYLLDEANLHLE------TPLEDIDG--FIELVRK 290 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 + LA +++ ++L ++ I N + I++ + ++ L+P I I L Sbjct: 291 QNPLALGILDTYIKNLAIGLSNIIFFVNCEMIILNSHLIQSLPYLMPEIMKDI---ILPI 347 Query: 367 FRTNLPVVRSELDHRSAIGAFAL-VKRAMLN 396 T ++ S L + + I +L Sbjct: 348 THTQ-EILISTLGNEAPILGASLKAIEEFFE 377 >UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG91_9CLOT Length = 403 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 109/392 (27%), Positives = 192/392 (48%), Gaps = 16/392 (4%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N + ++ +N + L+ + G +R +A SQL A+VT I I+ GL+KEV Sbjct: 9 NQENIQDMNRTLLLNLLRKEGICARAHLANLSQLKQATVTNIVSDFIDWGLVKEVGFLVG 68 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHAL 129 GRR+I I +F + +RL R + T+ +F+LS ++L ++ L + + A+ Sbjct: 69 NKGRRSIGISINNDDFGVLAIRLARKNYTVGIFNLSGRLLDKKRVELDVNQPPRVTFEAI 128 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPH-IQVENWGLVEALEERFKV 188 ++ + I S + R++IAI + +PG G+I M + + E L++ FK+ Sbjct: 129 IHEAGELIRSS--ESRKIIAIGMAIPGPYSEKRGRIELMTGVLGWNEIPIQEKLQDIFKI 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCED--SILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 F+ D + ALA+++ +D ++ + + V +G GAGII+NG + G G GE+G Sbjct: 187 PVFLEQDANAGALAQYWH-NDEDYKNGVVVYIAVGQGVGAGIINNGELLKGCIGVAGEVG 245 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H + G RC CGN+GCLE ++ A + V +L+ P + + + + Sbjct: 246 HTSICYNGPRCACGNYGCLENYCSSIAFTKEVNRVLR-------PEIEYNFRQVSQLLRD 298 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIESCINTQALK 365 GD + +++ L I IN FNP IVI E++ V+L ++S + + L Sbjct: 299 GDQVVTDIFLDACDKLSVGIVNIINSFNPSVIVIGDEMSHILPSVMLERVKSNVKERVLP 358 Query: 366 AFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 N+ + S + + S A GA + + N Sbjct: 359 EIYANMNITMSVVSNDSMAHGAAIVAINDIFN 390 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 164/374 (43%), Gaps = 6/374 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI--- 62 + + D +++ N + V + + + GP++RI + + ++L+PA+VT IT L+++ LI Sbjct: 1 MTRKADRDQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSL 60 Query: 63 -KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE--HYPLPE 119 E + GR + + IGVRL ++ + L + + +V+ E H+ Sbjct: 61 ESEEPKAPQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSAT 120 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV 179 + L+ I QF++ + I V G+V+ ++G + + P +V Sbjct: 121 EDAASFPETLIGTIRQFLNDAGIVPSRVREIGVAAQGVVETETGVVAWSPAFAGRKIPIV 180 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 L + F C++ +D + A H+ ++ ++ + G G G+ + R+F G + Sbjct: 181 GPLHDAFGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSGAS 240 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G E GH P G C CG GCLE ++ A+ + +L + S + + Sbjct: 241 GTAAEFGHANHLPGGALCRCGKKGCLEAYLSDYALVRAASHLPENTDPSTIKAGVGGLAR 300 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + + A GD A GR LG +A I + +P++IV+ G A + + + Sbjct: 301 LIELAGSGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVLTGAAMRAFSFMEKGMWEGL 360 Query: 360 NTQALKAFRTNLPV 373 + R N + Sbjct: 361 EEALVADLRNNFSL 374 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 86/307 (28%), Positives = 154/307 (50%), Gaps = 3/307 (0%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLR 145 + IGV LG L D ++ + P E ++ + ++ I + ++ + Sbjct: 5 YVIGVDLGGTKIAAALVDFKGTIICKYTLPTKAEEGEKYILDNIIKIIEKVVNFGGVCSK 64 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 ++ I + PG +D D GKI P++ +N+ +V L+ FK+ F+ +D + A+AEH Sbjct: 65 KIKCIGLGAPGPLDIDKGKIICTPNLPFKNFNIVSPLKNHFKMPIFLDNDGNAAAIAEHM 124 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 FGA + + + + V G G G I NG+I+ G N EIGH+ ++ G C+CGNFGC Sbjct: 125 FGAGKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCNCGNFGCA 184 Query: 266 ETIAANAAIEQRVLNLLKQGYQSRVPL-DDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 E +A+ AI + +K GY + + L + T K + K A GDS++ +++ +LG Sbjct: 185 EVMASGTAIAREAKKAVKMGYNTTLALYKNITSKEVFKEAQLGDSISQNILDTTLNYLGI 244 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA- 383 +A I +P+ ++I G +++ K++ I + + N ++ + L + Sbjct: 245 CVANIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCFGTVSKNTRILPALLGTDAGV 304 Query: 384 IGAFALV 390 IGA AL Sbjct: 305 IGAAALA 311 >UniRef50_D2BD51 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangineae RepID=D2BD51_STRRD Length = 401 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 172/382 (45%), Gaps = 14/382 (3%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 +T Q + V+ N A V R + ++ P SR IA + L A+V+ + LI+R Sbjct: 2 ITSTTDPQPADFADVRATNLAVVLRFVREHAPCSRADIAASTGLNKATVSSLVADLIDRR 61 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVL--AEEHYPLP 118 L++E + GR A +V + + AIGV + T DLS + L + Sbjct: 62 LVRETGLTENRVGRPATMLVLDGSPYAAIGVEVNVDYVTAVAVDLSGERLLSWRRSFSGA 121 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL 178 T + + + ++ ++ R+++ ++V +PGLV D G + P++ + L Sbjct: 122 TITAAQAVATVAAIVRRVVNRMAKEERQVLGLAVGVPGLVGTD-GTVRIAPNLGWRDADL 180 Query: 179 VEALEERF---KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIF 235 L + V +D ALAEH FG + + + G GAG++ +GR+ Sbjct: 181 CGDLTKALRDPGFPVQVDNDANLAALAEHRFGPRAGTANLVYLTGEIGVGAGVVLDGRLR 240 Query: 236 IGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC 295 G G GEIGHIQ++PLG C CG GCLE +A A+ + + + Sbjct: 241 RGGQGYGGEIGHIQLDPLGAECRCGRLGCLEAVAGIGAVLEHAALSPAEV--------EI 292 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 + + + A D V+ VG +LGK +A+ NL NP+ +++ G LLPA+ Sbjct: 293 ELDEVVRLARAADPRILAVLATVGHNLGKGVAVIANLLNPEVVILGGYYVPLAPWLLPAV 352 Query: 356 ESCINTQALKAFRTNLPVVRSE 377 E+ + + + VV S Sbjct: 353 EAELRGRTIAPDAGGCQVVAST 374 >UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C348_BEUC1 Length = 410 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 171/381 (44%), Gaps = 16/381 (4%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST--GGRRAIS 78 A V+ I +GP+SR ++ + L ++V ++T L GL+ E + S GGRRA Sbjct: 11 ARVFGEIWHHGPLSRSELVALTGLTKSTVFQLTEDLQRDGLVVETGLRTSGSQGGRRATL 70 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFID 138 + +GV LG ++ + D +VL P R + I + Sbjct: 71 LQANPDAVRVVGVHLGGTRTSVAITDTFGRVLDARSRPTVRRRPDESVARVAEMIGELSA 130 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRS 198 + A+ V +PGL+D D+G P++ + + + E + + +++ Sbjct: 131 EHGAPS----AVGVAVPGLIDRDTGLCLVAPNLGWRDVPVATLIGEAVQAPTIALNTVQA 186 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV----EPLG 254 +A+AE + ++ V G G +I++G + G G GE+GH+QV +P Sbjct: 187 MAVAEMAQLRPDERMTLAMLYVGTGVGTALITDGNLLRGARGLAGELGHLQVRDPGDPEA 246 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 +C CG GCLE++ AI +R R+ T + + + A+ GD+ A + Sbjct: 247 VKCACGRVGCLESLVGADAIVRRATQRGIAAAGRRL-----TPELVGELASDGDAAARSL 301 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 I+ + +G+ A + L NP +V+AG + +LL + + + R +L V Sbjct: 302 IQDIAVEMGEAAAALVQLTNPDTVVVAGSVASMGDMLLDPLRETVVRRTQPELRESLDVR 361 Query: 375 RSELDHRSAI-GAFALVKRAM 394 RS LD++ + GA L +A+ Sbjct: 362 RSLLDNQGKLRGAITLALQAL 382 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 108/380 (28%), Positives = 167/380 (43%), Gaps = 15/380 (3%) Query: 37 QIAEQSQLAPASVTKITRQLIERGLIKEVDQ-----QASTG-----GRRAISIVTETRNF 86 +A + L+ ++++ I +L++ GL++E Q AS G GRRA + R Sbjct: 2 DLARELGLSRSAISSIVTELMDAGLVREAGQRVAGNGASRGAGGPVGRRATLLSLNARAA 61 Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHALLNAIAQFIDSYQRKLR 145 H + V LG A + L DL LA R L ++ Sbjct: 62 HLLAVDLGASHARVDLLDLRCTTLATRTAQHDILRGPAATYALLKELAQAVLEEAGVPRE 121 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 + A+ +PG VD +G + P++ + ++ LE + V +D ALAE Sbjct: 122 RVAAVGAGVPGPVDYATGCVVQPPNMPGWDGENVMAGLERVLDLPTRVDNDANLGALAES 181 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 FG + D I V+V G GAG++ GR+ G G GEIGHI + G GN G Sbjct: 182 RFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSGNPGS 241 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 LE+ AA + + G S +P D T+ + AN D LA V G HLG Sbjct: 242 LESYAAAQVLLETARARRAGGVPSTLP-DPLTLADLIAFANT-DPLARAVWAEAGHHLGV 299 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA- 383 I+ A+NLFNP +VI G + +A +V L A+ ++ ++ + S L + Sbjct: 300 AISTALNLFNPSAVVIGGRLAQAGEVFLHAVRESALSRTMRINADRARIDLSTLGEGAGV 359 Query: 384 IGAFALVKRAMLNGILLQHL 403 +GA A++ + L+HL Sbjct: 360 LGAGAMLLDHLFTPAGLRHL 379 >UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID=C6WCK9_ACTMD Length = 435 Score = 317 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 99/410 (24%), Positives = 173/410 (42%), Gaps = 16/410 (3%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 P A+ V +++ N +A+ + GP+SR ++ ++ L+ A+V+ T L++ L+ Sbjct: 9 PTMPAKRATVRDLRRHNRSALLSTLYFEGPLSRQELVARTGLSAATVSTATAGLVDERLV 68 Query: 63 KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 S GGR + H +GV +G + LFDL+ + +A + LP Sbjct: 69 VGAGTVESDGGRPRSLLRVNPGYGHVVGVDVGETGVAVELFDLALRRIAALDHDLPPTDP 128 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSG-----KIHYMPHIQVENWG 177 + + A+ + I ++ + + +PG V+ G + + + Sbjct: 129 LAVGALIAAAVPEVIALAGADQGSVLGVGIGVPGEVERRGGAWGAATLVHAQTLGWSGVP 188 Query: 178 LVEALEE-RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 L E + + FV + ++ AE +FGA + ++ + G GA ++++G + Sbjct: 189 LAELVRAGGTTLPLFVENGAKTQGQAEMWFGAGRGSRHVVVALLASGVGAAVVADGAVQR 248 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLL--------KQGYQS 288 G + GE GH V G RC CG GCLE A+ +R L + + Sbjct: 249 GSTSSAGEWGHTTVVHGGRRCRCGAHGCLEAYVGAGAVLERYRGLGGELGEGDERAAFAE 308 Query: 289 RVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA- 347 V L G LA+ V+E +LG IA +NLFNP+ IV+ G A Sbjct: 309 LVALAGGGTLGGGSPPAGGAQLATRVLEEAVGYLGAGIATLVNLFNPELIVLGGWAGAAL 368 Query: 348 DKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 + LP+I + AL+ + + L + A+GA L A+L Sbjct: 369 GEGWLPSIVAATREHALRHPFARVRLEAGRLGPDAVAVGAATLPVAALLE 418 >UniRef50_B2V1I0 Putative transcriptional repressor of the xylose operon n=2 Tax=Clostridium botulinum E RepID=B2V1I0_CLOBA Length = 379 Score = 316 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 165/388 (42%), Gaps = 18/388 (4%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 ++ LN + + I ISR ++ + L A+V+ I ++L++ LI+E STG Sbjct: 7 KDLRSLNKIKIIQSILYKKQISRADLSTFTSLNKATVSVIVKELLDLRLIEESTIGDSTG 66 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I + + I + + I + +LS+K+L+ + +T+ + L + Sbjct: 67 GRKPIILTINEDIGYVIAIDINITMIDIIVTNLSNKILSSYSIKNEDNNFETIFNNLFSL 126 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I + + + L+ IS+ + G+VD + G I ++P + +N + LE F V ++ Sbjct: 127 IHKIQNVMPSSIYNLVGISLAVRGVVDLN-GLIKFIPQLGWKNIDIRSKLENEFNVPIYI 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D A+AEH + D ++V + +GII N ++ G G IGH + Sbjct: 186 ENDGNLSAMAEHKL--MPNYNDMLVVDIDDVITSGIICNSQLVKGFLGFANAIGHHVINC 243 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G++C CG GCLE +N AI + L I+ + + A Sbjct: 244 DGKQCTCGKRGCLEQYCSNLAILSHINQSLPVK----------DIEEFVNLVKEENPYAL 293 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 ++Y HL + I + N + IV+ I +P ++ + Sbjct: 294 STLDYFIDHLAIGLTNLIFILNCEVIVLNSYILRE----IPVAMQKLHEKIFLPITRYQD 349 Query: 373 VVRSELDHRS-AIGAFALVKRAMLNGIL 399 + S+L ++ IGA + IL Sbjct: 350 LYLSKLGKKAPLIGACNICVEQFYKSIL 377 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 170/396 (42%), Gaps = 20/396 (5%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 G+ +++ N A V + GP+SR +A + L A+V+ + +LI GL++E Sbjct: 20 GRGLPDTQQGMRRRNLARVMHTVSAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEE 79 Query: 65 VDQQ-ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY--PLPERT 121 + + GR ++ R IG +G + DL +V + R+ Sbjct: 80 LGPERPGRVGRPGSALAVSGRGPAGIGAEVGVDHLAVCAVDLRGQVRSRAVRYGANRGRS 139 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 + + L + ++Q + + + ++V +PGLV D + P++ + L Sbjct: 140 PEPVIAELASLVSQVVAEGEGEGLWPAGLAVAVPGLVARDVRTVVRAPNLDWHDTDLGAL 199 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L + + VG++ ALAE + G D + V G GA ++ +G++ G G Sbjct: 200 LPQ--DLPLTVGNEANFGALAELWLGDGTPH-DFLHVSAEIGIGAALVVDGQLLRGTRGF 256 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GE+GH+ V P G RC CG GCLE A A+ + + + + + Sbjct: 257 AGELGHVPVHPDGPRCPCGGRGCLEQYAGEEAVLRAA----------GLEPGEDRVGLLA 306 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + A GD + G+ LG + A+NL +P+ +V+ G + LLP++ + Sbjct: 307 QHAADGDEAVRGALREAGQALGIALTGAVNLLDPEAVVLGGALAGLAPWLLPSLRDELAR 366 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 + PV S L + +GA V RA+L+ Sbjct: 367 RT---AGPACPVSVSGLGSQGPLLGAAHSVVRAVLD 399 >UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K724_THENN Length = 388 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 182/392 (46%), Gaps = 26/392 (6%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ-QA 69 N +K LN + ++I + P+SR I+E + L P+SVT++T++LI+ G I+E+ Sbjct: 14 NSPRIKILNKKTILKVIHENHPLSRSDISEITGLTPSSVTRLTKELIDEGYIREIGTMGK 73 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 ++ GRR + + + F ++ +G + T + +V + P+ ++ Sbjct: 74 NSPGRRRVLLDLKKEAFLSLVFDIGVNITTYGIGFFDGEVELRGTFNTPKNPEE-----F 128 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + + R+ + IS +PG+VD + KI P++ EN + + LE V Sbjct: 129 FKTAREIYERISREHS-ITRISFSVPGMVDLEEKKILLAPNLGWENVNIEDLLE--VDVP 185 Query: 190 CFVGHDIRSLALAEHYFGAS-QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ LAE Y ++ E+++ + + G G G++ +G+IF G + GE GH+ Sbjct: 186 VLADNEANLSMLAEKYHSEDLRNVEEAVFIIIREGVGTGLMVDGKIFRGPSFTAGEAGHM 245 Query: 249 QVE-PLGERCHCGNFGCLETIAA-NAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 V +CHC N+GC E +++ N AIEQ L + +I+ K Sbjct: 246 TVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELEGRN----------SIEKFQALKQK 295 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 D A V+ ++ I +N+ NP+ +++ GE+ + IE + +ALKA Sbjct: 296 ND--AKRVLMRFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFFSIIEDFVRQRALKA 353 Query: 367 FRTNLPVVRSELDHRSA--IGAFALVKRAMLN 396 NL + + + S+ +GA L ++ Sbjct: 354 AVRNLKIRPTAFRNISSNLVGAAVLAVEDIIE 385 >UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bifidobacterium RepID=C6A8T4_BIFLB Length = 401 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 159/369 (43%), Gaps = 7/369 (1%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 + + N A + + +G SR QIA+ L PA+++KI+ L+ G I E Sbjct: 9 QQTLSEYNRARTLQYLHHHGIASRAQIAKALHLTPAALSKISNHLLASGAIVETGALEGK 68 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ-QTLEHALL 130 G RR+I + R F +GV+ R I LFDL+ K P E T +L Sbjct: 69 GNRRSIGLAVNARAFQVLGVKFARSLIEIGLFDLAGKPSFIRELPTVENTTIPQAIESLH 128 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVT 189 I + + + ++AI + +PG D G + + E F V Sbjct: 129 AEIRRLLAEHPH----ILAIGMAVPGPYLRDRGHTAVVSSMGQWRQVNFRAEFEHAFDVP 184 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 + D R+ ALA++ F + E+ + G G G+I +G + G G EIGH+ Sbjct: 185 VIIEQDARAGALAQYLFDPNPANENLAYYLLGEGIGLGVIDHGTVINGSLGAATEIGHVS 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 ++ G+ C CGN GCLE + AI + +L SR+ + + + A GD Sbjct: 245 IDVNGKACDCGNVGCLERYCSAVAIHEAMLGNGMLATDSRLTHREACAE-LFARAQSGDG 303 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A E++E +G +G N FNP +IVI + +A + LL + + + + Sbjct: 304 QARELVERIGTFVGYGCVTICNAFNPSRIVIGDIVAQAGEPLLQRVREVVGERVIPEITQ 363 Query: 370 NLPVVRSEL 378 + + S L Sbjct: 364 STQIELSAL 372 >UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AF76_LISW6 Length = 378 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 98/389 (25%), Positives = 175/389 (44%), Gaps = 20/389 (5%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N ++++ N V I Q GP SR +++ L A+++ I ++LI + LI EV S Sbjct: 4 NRTVIRESNERIVLNTIAQKGPHSRALLSDTIGLNKATISDIVKKLIAQKLINEVGIGES 63 Query: 71 T--GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 T GGR+ I + + ++ V +G + + L E +P ++T+ Sbjct: 64 TNLGGRKPIMLELNAKAGFSVSVDIGYNYIDVMAQRLDGTAYKRELFPFIVIKRETIIQE 123 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + + + F+ S + ++ I + + G+V + I + P + AL E+F Sbjct: 124 ISDILDVFLSSLPKSPFGIVGILIAIHGVVLDNQ--IQFTPAYDLAGLDFSSALHEQFAC 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ ++ LA+++H S + + + +H G G+G+I N ++ G NG GEIGH+ Sbjct: 182 PVYLENEANLLAVSDHTKEES--YANLVSISIHSGIGSGVILNNELYTGINGYAGEIGHM 239 Query: 249 QVE-PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 Q+ G C CG GCLE A+ I YQ+R + + +C+A + Sbjct: 240 QIVTENGRPCPCGASGCLECYASEKNIL--------DTYQTRTGNKNALVTDLCRAFTEK 291 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 + A VI + R+L I L+NP+ I I EI+ IES + + Sbjct: 292 EEEAMAVINDMVRYLATGIQNLTALYNPEIIFINSEISRLIPDFTKQIESRLTSFT---- 347 Query: 368 RTNLPVVRSELDHRSAI-GAFALVKRAML 395 N+ + S L + + GA L+ + L Sbjct: 348 SKNIAIKESHLGEEAILYGAGYLIIQRFL 376 >UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJD3_BREBN Length = 392 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 174/391 (44%), Gaps = 13/391 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + GN LVK+LN V + + +G ISR I++Q+QL+ V+ + ++I+ GL++EV Sbjct: 4 PKKTGNSKLVKKLNKEEVLQQVVLHGQISRADISKQTQLSRPCVSALVDEMIQEGLLQEV 63 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQT 124 S GGR+ I + + + G + + D+ + LA L + +T Sbjct: 64 GMGDSKGGRKPILLEYNYQAYAIAGAIFEGSTLDMAIADMKGEFLARYRKRLAQPANGET 123 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + L + + + L+ + V L G+ SG + + P + + +E Sbjct: 124 VIEDLAAGLDRLLRESGIPRERLLGMGVGLQGVTQRGSGTVSFSPSTGWMGSPIQQTIEA 183 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 R + + +D+ + L E+ GA + + + V G GAGII +G+ + G GE Sbjct: 184 RLGLPVIIDNDVNMMTLGEYVRGAGVGHTNVVYMYVGTGIGAGIILDGQFYRGSREAAGE 243 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IG + + P+ R + G G ET + I+++ +G+ S + I+ + + A Sbjct: 244 IGFMMIGPVHNRPN-GASGVFETHYSIPGIQEQA-----KGFLSDLQEGSSVIEELIRHA 297 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 + A +++ V RH +A I++ NP+ ++++GE+ D + I + Sbjct: 298 KH-NPEAEKLLADVYRHWAYGMANIISILNPEILILSGEMVHVDGEGVKQIHEWLREWV- 355 Query: 365 KAFRTNLPVVRSELDHRSA-IGAFALVKRAM 394 + ++ L R+ IGA V A Sbjct: 356 ---PEVPNLEKASLGERAGLIGAVHSVLEAF 383 >UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterales RepID=C6P958_CLOTS Length = 382 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 182/390 (46%), Gaps = 23/390 (5%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 Q + G L+K +N+A V +I + PISRI+I++ ++ ++V+ I +LI+ GL+ E Sbjct: 3 QYRKGTNYLIKNINTANVLDVIKKMQPISRIKISKVLNMSKSTVSGIVDELIKEGLVSEE 62 Query: 66 DQQAST-GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 +T GR+ I + +IG+ + + L +L K++ + P + + Sbjct: 63 GYGKTTSAGRKPIELTFNPNAKFSIGIDIESTNTIGVLTNLEGKIIKKIKRPTGVKDEA- 121 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 ++ I + +D +E+ I V PG+ + + G + Y P + ++ L+ L+E Sbjct: 122 -FDNAVDIIRELLDC----QKEITGIGVGAPGITNIEKGTV-YAPGLSWVDFNLLPKLKE 175 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 F F+ + + AL E + G+ +D + +LV + G G+GI NG++ G + GE Sbjct: 176 VFDYDIFIDNSVNYAALGERWIGSCKDVNNFVLVTIGNGIGSGIYINGKLVRGHKYSAGE 235 Query: 245 IGHIQV--EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 +G++ + + L ++ ++G E+ A+ + + NL + T++ Sbjct: 236 VGYMAIGRDILNKKYFYEDYGYFESKASLLGLVSSLKNLSNGKFN--------TMEDFIN 287 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 D + +L I++ NP+ IVIAG++ ++ ++ I+ Sbjct: 288 GYLAKDEICIRAFNEFIENLSMGFTNIISILNPELIVIAGDVINLGINIVENLKRLIDKM 347 Query: 363 ALKAFRTNLPVVRSEL-DHRSAIGAFALVK 391 ++ ++ ++L + +AIGA A V Sbjct: 348 IPF----DVKIIYTKLNEDAAAIGASADVL 373 >UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35AB4 Length = 401 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 168/391 (42%), Gaps = 15/391 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ---QASTG 72 K N + + I + PI+R IAE++++ PA+VT LI G ++E+ + ++ Sbjct: 8 KASNRSRILECIYRNAPIARTDIAEETEITPATVTMNVTTLISEGFVRELGEVSTDEASS 67 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ + I ++IG+ + I + DL ++ + P E + A++ Sbjct: 68 GRKRVLIDIIPDRAYSIGLEFTQKALVICITDLKGRIRFQRTEPFNEELAGRITDAIIGG 127 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 + + E++ I +PG ++ + + +N+ + +E+ + Sbjct: 128 VKDLVAESGISWDEIVGIGAAVPGHMNGSASSLI-TNRKTWQNFD-PKRIEQELPLPIVC 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 ++ R +AL E+ F + + V G + +G +F+G N GEIGH V Sbjct: 186 ENNARCMALGEYLFSPQESPDSFAFFHVGMGMFCASVVDGEMFLGENYVAGEIGHTIVSE 245 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKG 307 G RC CG +GCL+T A+ + + L + + + TI+TI A + G Sbjct: 246 GGRRCECGKYGCLQTYASENHLIRNARLLYRNTPNTILRSLVSDDSQITIETITTAYSMG 305 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL--- 364 D + I ++LG TI+ + NP KI + G++ + + + I Q + Sbjct: 306 DPVIGMYIAEALKYLGITISNIAIITNPGKIFLHGQLFDNQD-IQNELMDYIERQLIFVD 364 Query: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRAML 395 + + N+ ++ A+GA AL Sbjct: 365 RTYAGNVEILP-YGAADGAVGASALAILRFF 394 >UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus RepID=C8ZX67_ENTGA Length = 388 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 97/385 (25%), Positives = 176/385 (45%), Gaps = 19/385 (4%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST--G 72 +++ N AAV + I ISR +++ + L ASV++I ++LIE +KEV ST G Sbjct: 8 IREQNEAAVLKTIIDNEHISRAEVSNLTNLNKASVSQIMKKLIETDFVKEVGIGDSTSIG 67 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I + ++ AI +G + L ++ + +A T+ + + + Sbjct: 68 GRKPIQLQFNHQSSLAITFDIGYNYVNGMLSYINGQRIAILEKQDILITKDNVFTTIDSI 127 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 +A+F L+ I + + G+V+ ++ I + P+ +E+ LV L +++ ++ Sbjct: 128 MAEFTPKMPPTTHGLVGICLAIHGIVNQEN--ITFTPYYDLEHIDLVSPLSQKYHTAVYI 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 ++ AL E+ F S D + + V +H G G GII NGR+ G +G GE+GH + P Sbjct: 186 ENEANLTALGEYCF--SSDSTNLLSVSIHSGIGVGIIVNGRLQTGTHGTAGEVGHSTLFP 243 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G C CGN GCLE A+N + + K+ + KA G+ A Sbjct: 244 HGNLCPCGNRGCLEQYASNKVLFDTYSHYTKK--------ELVNSDIFAKAIRSGEKSAL 295 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 E+ + L + I F+P+++ I + +P + + + F N Sbjct: 296 ELAQQNVEFLSIGLNNVITFFDPEEVYINSSVYRK----IPQLTKDLQQKLTSQFTQNTK 351 Query: 373 VVRSELDHRSAI-GAFALVKRAMLN 396 + S L ++ + G L+ + LN Sbjct: 352 IKNSRLGEQAPLFGGNVLIAKNFLN 376 >UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS614 RepID=A1SG81_NOCSJ Length = 400 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 172/393 (43%), Gaps = 17/393 (4%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE- 64 AQ G++ ++ N A V I+Q G +SR + ++ L+ ++V+ + QL+++G++ E Sbjct: 1 MAQGGSLGELRAANLALVISTIEQTGALSRADLMRRTGLSRSTVSSLVVQLLDQGVLVER 60 Query: 65 ---VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ER 120 GR I + G+ +G + L S ++ E L + Sbjct: 61 LDRGTPYKGRSGRPPILLELAALTGVVAGIDVGHRHVRVALARPDSTIVLERSVALDVDD 120 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + + + + + + +L ++ + +PG VD G++ Sbjct: 121 SPRESMDRVATLLDELLAESGHELSDVRGAGLGIPGPVDR-GGRMTSGILPTWRGLQPAA 179 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 L ER V V +D A E +GA+ D I V+ G GAG+I +G + G G Sbjct: 180 ELAERTGVIARVHNDAHLGARGELAYGAACGHRDVIYVKASTGIGAGLIVDGHLVTGATG 239 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 GE+GH+QV+ G C CG+ GCLET + +++ LL+ Y + T+ I Sbjct: 240 IAGELGHVQVDVNGVMCRCGSRGCLETEVSGP----KLVELLQPAYD-----EQLTVPRI 290 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 + A GD+ A+ + GR +G+ +A N+ NP+++V+ G A L I ++ Sbjct: 291 LELAQSGDAGATRALNDFGRRIGRVLANIANMLNPEQVVVGGGFGAA-PALQAGIRDALD 349 Query: 361 TQALKAFRTNLPVVRSELDHRS-AIGAFALVKR 392 + + V+ L R+ +GA A+ Sbjct: 350 RYSQPTTAAAITVLGGALGERAEVMGAIAVALD 382 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 100/397 (25%), Positives = 176/397 (44%), Gaps = 9/397 (2%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 A G+ +++ N V ++ + G ++ ++A + L+ ASV+ I R L G + Sbjct: 4 AAATPGSQSALRRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGTVLV 63 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQ 123 D S+ GRRA +I + + V + + D +LA E + Sbjct: 64 RDT--SSNGRRAKAITLVRQPGAVVAVDFTADSVRVAVGDSDGNMLAREEIGYDVASDAE 121 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEAL 182 + + + ++ +PG +DP +G++ + + + L Sbjct: 122 RGVRRAAWLAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLPRWAGFRPAREL 181 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 ER + +D LAE + GA E + + ++ G GAGI+ +G++F G G Sbjct: 182 TERLGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLFRGAGGTA 241 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GEIGHI ++P G C CGN GCLET + + L++L Q D I + Sbjct: 242 GEIGHIALDPRGHVCRCGNRGCLETFVGASYL----LDMLPQNTDVARGPDPVRIPDMVA 297 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA +GD + +I G LG+ AI NLFNP ++V+ GE+ +A +LL + + Sbjct: 298 AALEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPMRRSMELG 357 Query: 363 ALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGI 398 +L + L +V S L +++ GA + + + + Sbjct: 358 SLSSALDRLELVPSALGRDASLYGALRMAAQQVKSAS 394 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 175/371 (47%), Gaps = 9/371 (2%) Query: 34 SRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRL 93 SR +AEQ + + + L+E+GL+ E Q S+GGRRA ++ +G+ + Sbjct: 14 SRHAMAEQLGFSKSKANALIAGLVEQGLLAEAGLQRSSGGRRAENLQLHAGLGVLVGIDI 73 Query: 94 GRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLRELIAISV 152 G + + VLA+ P R + + + + + + ++ I + Sbjct: 74 GATSLDVAVLRPDLSVLAQHDEPADVREGPAVVLARVRVLMRELLARCGHGPKNVLGIGI 133 Query: 153 ILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQD 211 +PG V+ + G++ P + +++ + + L E + FV +D+ +AL E + + Sbjct: 134 GVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLREDYAAPVFVDNDVNLMALGELWR-LKRS 192 Query: 212 CEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAAN 271 + +++++ G G GI+ +G ++ G G+ G++GHI V+ G RCHCGN GC+E +AA Sbjct: 193 LNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAGDVGHICVDQDGPRCHCGNVGCVEAMAAG 252 Query: 272 AAIEQRVLNLLKQGYQSRVPL-----DDCTIKTICKAANKGDSLASEVIEYVGRHLGKTI 326 AI + + + G + + + +A+ GD+ A+ +I+ G +G+ + Sbjct: 253 PAITRMAVQAAEAGESAMLAECLRVHGRIDAIDVGQASRAGDTAANGIIQRAGNLIGQML 312 Query: 327 AIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI-G 385 A +N FNP + I G IT + L A+ + ++L +L + + L + + G Sbjct: 313 ASVVNFFNPSHVFIGGGITRIGPLFLAAVRQSVYQRSLALSTRHLEIQYTPLGVQGGLVG 372 Query: 386 AFALVKRAMLN 396 A L L Sbjct: 373 AGVLAMHETLK 383 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 313 bits (803), Expect = 7e-84, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 168/398 (42%), Gaps = 9/398 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGP-ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 + N+D V N V I + +SR+++A + L+ +++ ITR+L++ GL++E Sbjct: 12 RGTNLDRVGGFNDTVVLDAIRRAEQRLSRVELAAATGLSGQAISNITRRLLDAGLVREAG 71 Query: 67 QQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQT 124 +Q S G G+ + E +A+GV L T+ L DL+ +V+A P Sbjct: 72 RQKSAGLGKPRTLLELEPTGQYAVGVHLDPAVVTVVLLDLTGQVIARRRAQTPAADGPDV 131 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALE 183 L + + I + ++ + + PG +D D G + P++ L +AL Sbjct: 132 LIAGIAATVEDVIAEAGVPRQRVVGVGIAAPGPIDVDRGVVVDPPNLTAWHLVPLRDALR 191 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 +R + + D+ + A AE + G + + G GAG++ + G + NVG Sbjct: 192 DRTGLPVLLDKDVTAAASAEKWAGGPNGRGSFVFFYLGTGIGAGLVIGDEVVRGSSSNVG 251 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD---DCTIKTI 300 EIGH+ V+P G C CG GC+ + + Q+ ++ + D + Sbjct: 252 EIGHVIVDPEGPLCFCGRRGCVGESSRPRYLVQQAVDAGVVARGIDLDDRHAVDVAFTAL 311 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCI 359 C AA G A E++ + + K + NL + +++V G AI + Sbjct: 312 CTAATGGPGAAREIVTALAERIAKVVEDIANLLDLERVVFGGPHWDRLAPFFGDAIRETL 371 Query: 360 NTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLN 396 + L V + L A+GA +LV + Sbjct: 372 EERFLVRSVHPFTVTGTALGADVGAVGAASLVLDHTFS 409 >UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XND9_MEIRU Length = 397 Score = 313 bits (803), Expect = 8e-84, Method: Composition-based stats. Identities = 94/393 (23%), Positives = 167/393 (42%), Gaps = 20/393 (5%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + + +K+LN + + ++GP SR +A L ++V+ + ++++E GL+ Sbjct: 1 MARTTPLDQQAIKRLNRRLILEALRRHGPQSRAALARAVGLTKSTVSTLVQEMLEEGLLD 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 E + GR ++ R+ A+GV LG + + L DL++ + + + E Sbjct: 61 EGSRHKPGLGRPGTALEFSPRHTLALGVELGVENTQLVLLDLNNTI--HDKWDWVESPHT 118 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 L L Q + S L+ I + +PG+V+ ++ Y P N E LE Sbjct: 119 PLAERLTKLAEQ-VQSRLSDPTRLLGIGLAVPGVVN--GRRLLYAPGPGWHNEQPAEMLE 175 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 KV V +D + AL E ++G Q + V + G G G++ +G+++ GR G G Sbjct: 176 ALLKVPTLVDNDANAAALGETFWGEQQSP--LVYVLMTTGLGTGLVVDGQVYRGRLGAAG 233 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E+GH G+ G +E + A+ +R + I + Sbjct: 234 ELGHWL---TGQPHSRSRAGDVEGTLSLRAMVERYQAASNRKEG---------FWGILQR 281 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A D A + ++ + LG+ + F+P +V+ G EA K L + I+ A Sbjct: 282 AEHQDPYALQALQNLAYELGRFVVNLCVAFDPAVVVLGGAGAEAWKWLEAPLRQTIHNLA 341 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRAML 395 +PV S H + A+GA ALV + L Sbjct: 342 FIPEHAEIPVKPSAFGHLAPAMGAAALVLQRFL 374 >UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX6_9ACTO Length = 396 Score = 313 bits (803), Expect = 8e-84, Method: Composition-based stats. Identities = 98/389 (25%), Positives = 178/389 (45%), Gaps = 17/389 (4%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + G+ +++ N V ++ Q+GP+++++IA S L+ A+V+ + ++L + GL+ Sbjct: 5 RPAPGSQASLREANRERVLGVVRQHGPLTQVEIAAASGLSAATVSNMVKELDQAGLV--- 61 Query: 66 DQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQ 123 S GRRA+ + + GV G D + + S ++LAE+ PL + Sbjct: 62 GLSPSIRNGRRAVLVSLASGGGLLAGVAFGERDVRVAIASESREILAEQLMPLQADHVAD 121 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKI-HYMPHIQVENWGLVEAL 182 +A +S +++ ++ AI LP VD SG+ + EA+ Sbjct: 122 DGMERAARLLADLTESVGQRVEDIGAIGFGLPTPVDSVSGEAGSDAVLPGWRGVHVAEAM 181 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + + + AL E GA +D + ++ G GAGI+ G +F G G Sbjct: 182 SGYLRAPVVLDNTANLAALGELRAGALRDVQHGCYIKFSYGVGAGIVLGGEVFRGSAGTA 241 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GEIGH+ ++ G C CGN GCL+T + A+ + ++ + Sbjct: 242 GEIGHLTIDENGPICRCGNRGCLDTFVGSRALLNSLAA----------SHGPLRLRDVIT 291 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A GD VIE GR +G +A +NLFNP+ IV+ G++ EA ++++ + ++ Sbjct: 292 RALAGDLGCRRVIEDAGRRVGVAVAGLVNLFNPEVIVVGGKLAEAGELVMLPLREALDRC 351 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALV 390 A+ + + + +EL + +GA L Sbjct: 352 AIPSAAATVELRPAELGDTADVLGAIELA 380 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 166/386 (43%), Gaps = 19/386 (4%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG--------GR 74 V I GPI R+QIA ++ L+ A+VTK LIE G + + + G GR Sbjct: 19 VLTRILTQGPIPRVQIARRTGLSQAAVTKAVAPLIEAGFVTDEPVAPTEGSGESQLGIGR 78 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 + + IGV++ DL++ + H PL + + +T+ ++ Sbjct: 79 PVSPLTVLADSVSVIGVKVTPTGLIGVTTDLTAGIRTVRHSPLRDSSTETVIPRIVELAR 138 Query: 135 Q---FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + F+D LI I V + G VD G + P + L L E Sbjct: 139 ELMDFLDDQANGAGPLIGIGVAVSGDVDAAHGVVRDSPFMGWREVPLAATLTEELGAPVV 198 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V +D+R+L +AEH+FG D + +V + G G G+ NG + G G GE+GH+ + Sbjct: 199 VTNDVRALTVAEHWFGVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLPLA 258 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 P C CG GC+ET+A++ AI R + + + + A+ GD A Sbjct: 259 PGELICTCGRRGCVETVASSDAILARTRETTGRP--------ELDLAGAIELAHAGDEHA 310 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 E + G +G +A +NL P+ +VIAGE + + + A A Sbjct: 311 REAFDQAGEVIGSALAAMVNLVGPELVVIAGEGVADYDLYEQRMRRAFSAHAFGAAGDCR 370 Query: 372 PVVRSELDHRSAIGAFALVKRAMLNG 397 ++RS A GA A V R+ + G Sbjct: 371 LMLRSHTFDDWARGAAATVIRSYVRG 396 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 101/391 (25%), Positives = 176/391 (45%), Gaps = 6/391 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 V+ N A+V + + GPISR IA ++ ++ A+ + QL+E G++ E Q S Sbjct: 7 TTRDVRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLEEGVLGEAGQMPS 66 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSK--VLAEEHYPLPERTQQTLEHA 128 GGR A +GV LG + LFDL+ + +L + E+ + + Sbjct: 67 NGGRPASLTGINPGYGAVVGVDLGETAVRLELFDLALQRTLLVDTPVRAGEQGAEAIAEL 126 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + + + + L+ + V +PG+V+ + + P + E L LE+R + Sbjct: 127 IAAGVERLLSESGVARERLLGLGVGVPGIVEDSGTSLVHAPSMGWEGAPLAALLEQRTGL 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V + ++L AE +FGA+ + +D ++ + G GA ++ G ++ G + + GE GH Sbjct: 187 PATVSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGASASAGEWGHT 246 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G+ C CG GCLE AI +R + G + ++ I+ + AA G Sbjct: 247 TIVLDGDTCRCGAHGCLEAYVGAPAIVRRWAAV--SGEATAGLGEEEVIEQLAVAAEAGG 304 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQALKAF 367 A EV+ R+LG ++ +NL NP +IVI G +LLP + +AL Sbjct: 305 EQALEVLRETARYLGAGVSDLVNLVNPDRIVIGGWVGLRLGPLLLPLVREQARRRALGPP 364 Query: 368 RTNLPVVRSELDHRS-AIGAFALVKRAMLNG 397 L + L + A+GA ++ Sbjct: 365 FERLTLDLCHLGPDAVALGAATMIVDRFFAA 395 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 168/385 (43%), Gaps = 13/385 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ---ASTG 72 ++ + +I I+RI IA+ + ++PA+VT IT +L+ GLI+E+ + + Sbjct: 45 RESGRQQILDVIRAQESIARIDIAQATGMSPATVTAITAELLAAGLIEEIAPELAPGARR 104 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEHALL 130 GR +++ G+++ H + + D + LA PL L + Sbjct: 105 GRPRVALRLRGAARLIAGLKVSHHVISTVITDFVGQELASHEMPLVQGTMPVPELCAQIR 164 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 A+ + + +L + + + G++D D G I++ ++ N A+ Sbjct: 165 RALDLTCEKGGFSIEDLSGVGLGMAGMMDADRGFIYWSSSLEERNVAFTAAISAELPCPV 224 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 F+ +D +A AEH FG + C++ I++ + G G GI+ + +I+ G G E+GH +V Sbjct: 225 FLDNDANLVAKAEHLFGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELGHTKV 284 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 G C CG GCLE + A+ + S TI ++ ++A GD + Sbjct: 285 HLEGALCQCGQRGCLEAYVGDYALLREANI-------SSGSERHTTIASLFQSAENGDVV 337 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 A +++ R +A +N+F+P KI++AG D + + + ++ Sbjct: 338 AKSILDRARRMFAMGLANVVNIFDPSKIILAGARLSFDYLYSDKLIEEMRQWVVQVDAPL 397 Query: 371 LPVVRSELDH-RSAIGAFALVKRAM 394 V+ + A GA A + Sbjct: 398 PEVMVHDWGDLMWAKGAAAYALEEV 422 >UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile RepID=C9XQA7_CLODC Length = 408 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 89/389 (22%), Positives = 174/389 (44%), Gaps = 27/389 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST--G 72 ++++N V I + GPISR IA L A+++ IT++LI+ L+ E+ ST G Sbjct: 30 IREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGIGNSTHSG 89 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I +V ++ + +G +L L ++ + Q + ++ Sbjct: 90 GRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKKL----TDIQVSKDNVIQL 145 Query: 133 IAQFIDSYQRK----LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 I + I+SY ++I +++ + G+ + + + P+ + L L +++ Sbjct: 146 IDEIINSYNISKIDTPYKVIGLTLAIHGITCENK--VLFTPYYNLNEIDLYSILSKKYDF 203 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ ALAE+ F + + + +H G G+GII N +++ GRNG GEIGH Sbjct: 204 PIHIENEANLTALAENTFSTVHN--SLLSLSIHSGFGSGIIINNKLYSGRNGMSGEIGHT 261 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + P G+ C CGN GCLE + + +++ +L + + + + + Sbjct: 262 IIMPNGKLCPCGNRGCLEQYCSEKKVFEQLSSL--------ENIPKIDSDIVKQLYYEDN 313 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A +VI +L I AI + P+ I + +I +P I + +F Sbjct: 314 QNAKKVIHEFCSYLTIAINNAITTYAPEIIYLNSQIISD----IPEILQITKDMLVSSFN 369 Query: 369 TNLPVVRSELDHRSAI-GAFALVKRAMLN 396 + + S L +++ G A+ ++ LN Sbjct: 370 KGINIEISSLGSEASLYGGSAVNIKSFLN 398 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 310 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 175/386 (45%), Gaps = 14/386 (3%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 +++L+ P +R ++A + A +++ L+ GL+ + +STGGR + Sbjct: 19 LFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAGEASSTGGRPPATFAFS 78 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQ 141 + V LG A + + DL+S VLAE P+ + + + + S Sbjct: 79 PAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDVILGWVAQTGEELVLSTG 138 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLA 200 R L +L+++ V LPG V+ +G+ P + ++ + L R + V +D+ +A Sbjct: 139 RTLDDLVSVGVGLPGPVEHSTGRPINPPIMPAWDDVDVPGGLSARLGASVLVDNDVNIMA 198 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE-RCHC 259 L EH D + V+V G GAGIIS+G + G G G+IGH+ V E C C Sbjct: 199 LGEHRT-EWPGVSDLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHVAVSDRSEVPCRC 257 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 GN GCLE +A+ A+ ++ S + GD AS + G Sbjct: 258 GNLGCLEAVASGQAVAAQLAATGLAATSSN---------DVVALVRAGDLYASRAVRQAG 308 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 R +G +A ++L NP IV+ G + + + L+ I + ++L +L +V S Sbjct: 309 RDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGIREVVYRRSLPLATQHLRIVASRTG 368 Query: 380 HRSA-IGAFALVKRAMLNGILLQHLL 404 +R+ +GA A+ +L+ + L+ Sbjct: 369 NRAGVLGASAMAVDHVLSSAAIDALI 394 >UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCW6_SANKS Length = 429 Score = 310 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 169/391 (43%), Gaps = 14/391 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 + +++ + I G +SR+ + + L A+V+ + R+LI+ GL+ E + STGG+ Sbjct: 6 RSASTSVIVDAIRASGTVSRVGLTVTTGLTGATVSTVVRRLIDDGLVVETGRAESTGGKP 65 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIA 134 + + + +A+GV L T T+ DL+ +A +P P R+ + + Sbjct: 66 RVLLELDPTARYAVGVHLDHASITCTVTDLAGTSVALSTHPGPGTRSPAEVLVETAAEVD 125 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVG 193 + +D ++ I + PG + D G P ++ ++ + L + + Sbjct: 126 RLVDEAGVDRSRVLGIGFVAPGPLTSDGGMHRTPPEMRAWTDYPITSELGRLTGLPVVLE 185 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D + A+ EH+ G + ++ + G GAG++ +G + G +GN GEIGH ++ Sbjct: 186 NDATASAIGEHWAGGTGTENSFAVLYMGTGLGAGLVLDGVAYRGSSGNAGEIGHTTLDLD 245 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLN----LLKQGYQSRVPLDDCTIKTICKA------ 303 G C CG GC+E +A AA+ G + + + Sbjct: 246 GPVCWCGTRGCVEVLAGPAAVVAEARRSPDLAAAAGLSTGTSGSEPQPSVVSDLAAVARA 305 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPAIESCINTQ 362 A G A +V+E R++ A+NL + + +V+ G + A + LPA+ + + Sbjct: 306 AAAGHPGARDVLERSARYVAAAALTAVNLLDVRMLVLTGASLAAAGDIYLPAVRGVLASS 365 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKR 392 + V S + A+G ALV + Sbjct: 366 LFARGAHPVDVRLSRTAATAPALGGAALVLQ 396 >UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7Z7_9BURK Length = 413 Score = 310 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 162/405 (40%), Gaps = 43/405 (10%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 P G+ LVK++N + + R + +SR Q+A +S L ++V+ + R+LI+ G Sbjct: 18 APQIMKTTGDQQLVKRINRSVLLRQLRAQPGLSRAQLATESGLTKSTVSLLVRELIDEGW 77 Query: 62 IKEVDQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 + E D + + GR + + +TR+ IGV + + L+ +VL L Sbjct: 78 VTETDVTTTQSQGRPSTPLHIDTRSRGLIGVEVAVEALRVVGVSLTGQVLCAAEEALNGT 137 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + + IA+ Q++ E + + V LPG D +G + + P++ N L+ Sbjct: 138 KPEDVCRQAARLIARTYKQLQQRNIEALGVGVGLPGAFDEATGMLRFAPNLGWRNVDLMP 197 Query: 181 ALEERF------KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI 234 + E ++ + ++ + AL+E+ F + I V G GAGI+ N R+ Sbjct: 198 PIAEALAKAKLPELKVHLQNEADTAALSEYEFSDGDAKDSLIFVTCGVGVGAGIVLNDRL 257 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 F G G GEIGH ++ G C CG GC ET + Sbjct: 258 FTGVQGMAGEIGHNILQIDGPLCSCGRRGCAETFFGARTL-------------------- 297 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 A D G +LG + FNP +V+ G + ++ A Sbjct: 298 ---------AKLPDPT------QGGHYLGVVLQNLWTTFNPSTLVVGGPSCDTYPGIVKA 342 Query: 355 IESCINTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLNGI 398 + + A A V + SA+GA ALV L + Sbjct: 343 AQDTLQRYADAAGMAAPTVRPARYGLLASAVGAAALVLHHELRPM 387 >UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP32_9FIRM Length = 406 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 108/413 (26%), Positives = 186/413 (45%), Gaps = 19/413 (4%) Query: 1 MTPGGQAQIG-NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIER 59 M G A+ G N L+KQ N + +LI SRI++++++ LA +VT I + +ER Sbjct: 1 MGAGKMAKSGVNNTLLKQRNRGLILKLIATGQCSSRIELSQKTGLAKMTVTYIVNEFLER 60 Query: 60 GLIKEVDQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP 118 G+ +E + G GR + + + IGV L R ++ L D+ K+L + +P+ Sbjct: 61 GIFEERQKVQVEGKGRNPVQLCISDKAPKLIGVHLYREICSVILCDIQLKLLKKICFPVT 120 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWG 177 E T L + +A+ Q +++ + I I I P VD + GKI P+ + + Sbjct: 121 EETAPQLMEHIFHALDQIMETLGDEKIYGIGIGAIGP--VDKNRGKILAPPNFYGLHDLE 178 Query: 178 LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 + +EE + F + A+ E Y+GA DCED I V + G G+G++ NG ++ Sbjct: 179 IAREIEEHCHMPVFFDGESNCAAIMEKYYGAGTDCEDFIYVDLANGVGSGLVVNGELYAN 238 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 +G + E+GH ++ GE C CGN GCLE ++ +E ++ + R + Sbjct: 239 TSGMICELGHTSIDWQGEPCSCGNRGCLERYISSNVLESQLQKVTGDMKDFRGFCQEMD- 297 Query: 298 KTICKAANKGD--------SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 +A +G+ V + L + +N NPQKI+I E Sbjct: 298 ----EAIKEGEGNTFTKRQQDMDRVFTEMTEKLSCALVGFVNSLNPQKIIIGHEGYWIPD 353 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGILLQ 401 L IE +N + ++ + VV+S + + G + A+ G Sbjct: 354 PYLCKIEKLVNERHIERKYRQIQVVKSGFKDEATVYGCTGALLTAVFEGSFFD 406 >UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O82844_TETHA Length = 386 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 176/378 (46%), Gaps = 20/378 (5%) Query: 22 AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE--VDQQASTGGRRAISI 79 + + I Y ISR ++ + + L +SV+ IT+ L+++ +I E V ++GGRR I + Sbjct: 13 LILKNIIDYQEISRAKLTKITNLTKSSVSDITKTLLDKDIIYESKVGNSTNSGGRRPIYL 72 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDS 139 + IG+ +GR+ L ++ ++ E+ Y + + L I Q Sbjct: 73 KFNENSALVIGIEIGRNYIKGGLSYINGSLIREKSYTQITINRYNIIDTLSQIIQQLCSD 132 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSL 199 + +I + V + G + + I ++P+ ++ L E L + F+ ++ + Sbjct: 133 LPKSSYGIIGVGVAIHGSIYKNK--ITFVPYSDMDEIELQEKLSSHTHLPVFLINEANAS 190 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 AL E+ F + + E I + + G GAGII G ++ G+NGN GEIGH + P G C C Sbjct: 191 ALGEYTF--TSNSESLISISIQDGIGAGIIEKGILYSGKNGNAGEIGHTTLYPDGRLCPC 248 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 GN GCLE A+ + + + L + ++ C + + + D ++++ Sbjct: 249 GNHGCLEQYASTTILYKEISKLKE--------VEYCDLHQVINYWH-NDEEVIQLLKNNA 299 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 + + + +++++P+ +VI E+ L+ IE + + N+ + + L+ Sbjct: 300 KLISIGVNNIVSMYDPETVVINNELYREIPDLINVIEKHLTRR----NNRNVFIKNTSLE 355 Query: 380 HRSAI-GAFALVKRAMLN 396 ++ + G +LV R L Sbjct: 356 DKTTLYGCLSLVIRQFLK 373 >UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifidobacteriaceae RepID=B3DR20_BIFLD Length = 389 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 94/381 (24%), Positives = 163/381 (42%), Gaps = 15/381 (3%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ +++ N A + I ++G ++++++AE + L+ A+V+ + QL++ ++ + Sbjct: 7 GSQTSLREANRANLLASIHKFGAMTQVELAEVTGLSTATVSTLVHQLVDEDQLET--KST 64 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHA 128 GRRA + +G+ + R T+++ D S ++AE PLP T Sbjct: 65 VRNGRRATLVTLARHQGLGVGLWIARRHLTLSIVDFSKSIIAEHTLPLPLGHKADTTLER 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFK 187 + I + + S + EL+ I V + V I + + + L F Sbjct: 125 AMLLINETLSSIDAEASELVGIGVAVAAPVATSDHTIAIPGILPGWDGVDITSPLRTAFN 184 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 V +V +D A E G + + + + G GAGI+ NG I G G GEIGH Sbjct: 185 VPVYVDNDANFAAYGESRMGVAAGKRNFVYISASDGVGAGIVINGEIMHGVTGLAGEIGH 244 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 IQV+PLG C CGN GCL+T+ A + Q + V + T+ + AN+G Sbjct: 245 IQVDPLGAICSCGNRGCLDTVVAENRLVQLL----------SVTHGNMTLDDLVSFANEG 294 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D +I +G+ A +P+ IV+ G++ V + + Sbjct: 295 DPGCRRIIADAAVRIGQVAADLCISVDPEVIVLGGKLAMTGDVFIQPFNEALQRMLFPDA 354 Query: 368 RTNLPV-VRSELDHRSAIGAF 387 + V V S D A+G Sbjct: 355 VAPIDVLVSSHPDDNCALGGA 375 >UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B8FTN1_DESHD Length = 406 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 170/388 (43%), Gaps = 10/388 (2%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 + LI G +++ Q+A+ + L ++ ++ L + LI + STGGR+ + Sbjct: 20 KKILGLILHKGGMTKSQLAKVAGLKLTTLNRMMLPLEKADLILPTETGESTGGRKPVIYD 79 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQTLEHALLNAIAQFIDS 139 R ++ IG+ + R + + L +L +++ ++ + + + Q + +L+ I + ++ Sbjct: 80 VNPRRYYVIGIDISRLYSQVVLTNLKMELIEKDRFDMDRNSSPQATLNRILDWIGRVMEK 139 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHI---QVENWGLVEALEERFKVTCFVGHDI 196 +I + + G +D SG I + EN L +EER + + + Sbjct: 140 RGHGY--VIGVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIIDNGA 197 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 LAE +G+ + + I + G G+IS+G + N H+ ++ G+ Sbjct: 198 NGAVLAETRYGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVIDVNGKP 257 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD--CTIKTICKAANKGDSLASEV 314 CHCGN GC+E ++ AI + + + QG R D + +C+ A + D++A +V Sbjct: 258 CHCGNQGCVERYSSIYAIMEALAEEMPQGKDRRNHKADRPVSYLELCREAEENDTIARQV 317 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 ++ +G +A I L NP +V++G + ++ + +L Sbjct: 318 LQNAAVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRRRPWDKGGHLVFS 377 Query: 375 RSEL--DHRSAIGAFALVKRAMLNGILL 400 R ++ +IGA ALV L L Sbjct: 378 RGGAFEENAISIGAAALVVEHYLEPETL 405 >UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3V9_9CLOT Length = 386 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 172/399 (43%), Gaps = 35/399 (8%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M GG + +++L++++N + + ++ + P+SR Q+A L+ +V+ I +L+ + Sbjct: 6 MAKGGNPR--HLELIRRINRSLILNMVKERQPVSRAQLARALNLSKTTVSSIVDELVRKK 63 Query: 61 LIKEVDQ--QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP 118 L+ E + GR ++ + R+ + IG+ + + + + DL+ + L E P Sbjct: 64 LLVEYGDCCPSGGAGRPSVMLGFNPRSAYCIGIDIASANLRLIITDLAGEALYETKRPPS 123 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL 178 R + L+ + + + K+ + + + +PG+V G + + N+ L Sbjct: 124 SRMGE-----LIGVVEEAVRDCGLKMEAVFGMGIGVPGIV-TAEGSVVRAKFLGWSNFPL 177 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 +EE F FV + + AL E + G+ +D + VR+ G G +I G++ G Sbjct: 178 KRLMEEHFPFPVFVENGVNLAALGERWLGSGDQVDDMLFVRIGTGIGGAVICGGQLIHGA 237 Query: 239 NGNVGEIGHIQVEPL---GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC 295 GN GEIG+ G G G LE + AA+ Sbjct: 238 GGNAGEIGYFLESRDVELGNVNQPGQQGVLERKCSGAALTGHGRP--------------- 282 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 + + A +GD A+ V+E R L IA ++L P K VI G+++E ++ + Sbjct: 283 -TEELFAAYGQGDREAARVVEPFIRDLSVAIANCVSLLGPAKAVIGGDVSEQMSPVIYRL 341 Query: 356 ESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAM 394 + L R + V + L R+ GA V AM Sbjct: 342 REEVER--LTPIRAD--VCLASLGGRA--GALGAVFHAM 374 >UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillus sp. B14905 RepID=A3I7X3_9BACI Length = 383 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 179/389 (46%), Gaps = 14/389 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + +++ N V I Q PISRIQ+++ ++++P ++T+I ++L G I E + + Sbjct: 5 DQVQMRRQNKYIVLDAIRQMAPISRIQLSKYTKMSPTTITRIVQELEAEGFILEGVSEET 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLA--EEHYPLPERTQQTLEHA 128 GRR I + IG+ + + + D K++A E + R ++ + H Sbjct: 65 AIGRRPTLIHMREDALYTIGIEIDCFTIRLGILDFLGKLIAFQEIKCSIKHRYEEAI-HL 123 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L N+IA + YQ +L+ I + +PG+++ + G I ++ EN + E L F Sbjct: 124 LKNSIATIMSEYQIAQEKLLGIGIGVPGVINNEEGIIVSSEQLKWENCRIGEDLNGVFDC 183 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V ++++ +AE + + ILV + G GA I+ NG ++ G GEI HI Sbjct: 184 EVIVDNELKMQIIAEIGDIYTPLYSNCILVGMGTGVGASILLNGEVYRGIQNKAGEISHI 243 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + P GE CHCG GCL + + R + L +I+ + + ++G+ Sbjct: 244 TINPFGEMCHCGKRGCLSMYISEMTLLNR----------TPKNLTIQSIEEVLQCVDRGE 293 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A ++ + V +L I + L+ P+ ++++GEI E + + K + Sbjct: 294 QWAVDIQQDVATYLAIAINNLVCLYEPEAVIVSGEIIEHNVTFQKLLSEKCKQYIWKELQ 353 Query: 369 TNLPVVRS-ELDHRSAIGAFALVKRAMLN 396 + + S +L GA ++ +L+ Sbjct: 354 PHFVLQFSNQLKEGVVKGAALQAQKQLLS 382 >UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8E8_9ENTR Length = 377 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 165/366 (45%), Gaps = 10/366 (2%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 + + RL+ +SR IA++ +L+ A+++ + ++++ GL++E +A+ GR + Sbjct: 3 NAHQQQIIRLLIASHGMSRTAIAQKMKLSKAAISTLIKEMLNAGLVEESIPEATGQGRPS 62 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQF 136 + + + + +G L T+ L D+ + LA PL Q L A+ +AI Sbjct: 63 VLLKMRADSAYFLGASLLGEAITLVLIDMHGRTLATRVLPLNLDPHQ-LTRAIADAIPSL 121 Query: 137 IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDI 196 + +LI + V L G VD + ++ L + L+ + + + +D Sbjct: 122 VTQQGISPDQLIGLGVTLSGFVDEHQAVCVQSALLGWKDVPLADMLKAQTGLEVSLENDA 181 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 ++LA++E FG ++ + L+ G G+ G++ G +G GEI H +EP G Sbjct: 182 KALAVSEKIFGLAKKVRNFTLISHSDGIGSAHFFQGQLHRGAHGGAGEIAHCTIEPGGRP 241 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIE 316 C CG GCL+T+A+ AI + + + T+ + A KG S A ++ Sbjct: 242 CRCGKRGCLDTLASLTAIREHMRDKAIAAQ---------TLPELETQAIKGSSAAIAILH 292 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 G LG IA + + +P+ IVIA D +L + I+ L + P+ Sbjct: 293 QAGNALGLAIANIVQMNDPELIVIAHHPGAFDGLLKTVVMQAIDANVLPSIMGKTPISTI 352 Query: 377 ELDHRS 382 L+ S Sbjct: 353 VLNDES 358 >UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=Micrococcineae RepID=D1BAZ9_SANKS Length = 420 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 107/391 (27%), Positives = 184/391 (47%), Gaps = 15/391 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 A G+ +++ N A + I ++G ++++++ + L+PA+++ I ++L+ G++ Sbjct: 1 MAISGSQSSLREANRALIVDTIKKFGGLTQVELVAATGLSPATISTIVKELLGGGIVDT- 59 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQT 124 Q + GRRA + R GV+ G + L D V+AE+ PLP + T Sbjct: 60 -QSTTRSGRRAQMVTLARRVGLVAGVQFGHRHLKVALGDFGRTVVAEQTMPLPVDHRSDT 118 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALE 183 + + ++ + EL+ I + +P VD +G+I + + L + L Sbjct: 119 GLDRAALLVVELLERVGAPIDELLTIGLTVPAPVDVSTGEISVHGIMRGWDGQQLGQVLS 178 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 ER V +D + ALAEH GA + +D + VR+ TGAGI+ G + G G G Sbjct: 179 ERLARPVVVDNDANAAALAEHELGAGRGYQDVVFVRMSYSTGAGIMLGGHLHRGFAGTAG 238 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 EIGH+QV+P G+ C CGN GCL+T+ ++ A+ + D T++ + Sbjct: 239 EIGHVQVDPRGDICRCGNRGCLDTVVSSTALLDLLRG----------SHGDLTLRDLVSR 288 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD V+ G +G +A NPQ +V+ GE+ A +V++ + + Sbjct: 289 ALAGDLGCRRVLADAGERIGGVVATLAGTLNPQLVVVGGELAAAGEVIVEPLRQAVLRHV 348 Query: 364 LKAFRTNLPVVRSELDHRSAI-GAFALVKRA 393 L VV EL ++ + GA L RA Sbjct: 349 APNTVAPLEVVPGELGEQAEVTGALLLALRA 379 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 90/379 (23%), Positives = 175/379 (46%), Gaps = 12/379 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 +Q N V R + ++ +R ++A + L+ +V+ +T +L++ G++ + + GR Sbjct: 12 RQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHEDTQPRTGRP 71 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIA 134 + + + +A+G+ +G + + DLS ++L E + + Sbjct: 72 PVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHERSAADVDHAPVESFDLAGELVH 131 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVG 193 + L +I + + L VD +G + + +E R + V Sbjct: 132 GALGQAGVPLDRVIGVGMALAAPVDRATGTVFADGILPSWGRVQPAIEMEARLDLPVMVH 191 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D AL EH FGA +D + + VR+ G G G++ GR + G +G GE+GH++V P Sbjct: 192 NDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGELGHVRVAPE 251 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G C CGN GCLET+A++ A+ + + + + +++ + + GD A Sbjct: 252 GLICRCGNRGCLETVASSTAVARLLAHSRD---------EPVSVERLLELVADGDRGARR 302 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 + G+ +G+ +A +NLFNP+ I++ G++ LL + + I+ A+ + V Sbjct: 303 AVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPLRTAIDEYAVAPAAGAVTV 362 Query: 374 VRSELDHRS-AIGAFALVK 391 L ++ +GA ALV Sbjct: 363 SLGALGDKAEVLGAVALVL 381 >UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q516_CATAD Length = 404 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 157/396 (39%), Gaps = 4/396 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 QA +++ + A + I +SR ++A + ++ A+V+ + LI GL+ E Sbjct: 3 QAGAQTTRDLRRRSRATLLSCIYLGRAVSRPELARLAGMSSAAVSNVVSDLISDGLVAEA 62 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAE--EHYPLPERTQQ 123 S GGR + +A+GV +G + LFD + LA + Sbjct: 63 GSVDSNGGRPRTMLAARPGFGYAVGVDIGETHIHVVLFDWTLSTLATSTHEIRVGRLDPD 122 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 + +++ + +DS L+ I + +PG V + + P + L +AL Sbjct: 123 VVVRLVVSGVRSLLDSTGVPHERLLGIGIGVPGAVQEGERGVVHAPTLGWSGVPLGDALR 182 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 + + R+L AE + GA +D +++ G GA I + + + Sbjct: 183 AELDAPILIDNCARTLGQAEAWRGAGRDARRAVVALWGVGVGAAIAEGSSLAESGSSSTS 242 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E GH +E G C CG+ GCLE AI L + + + +A Sbjct: 243 EWGHAVIEARGRACRCGSHGCLEAYVGATAILDAYLAHPAGKPFTSDGTEAKMAELAARA 302 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCINTQ 362 D A+ + +LG + IN+ NP ++++AG + + +L+PAI Sbjct: 303 TTGADEAATATFDEAAEYLGIGVGNLINMINPDQVILAGWVGEQLGPLLMPAIREAARRH 362 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNG 397 AL + EL + A+GA L +L Sbjct: 363 ALPYLFDQTRIDVGELGPGAVALGAATLPVARLLAA 398 >UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1Z3_9CLOT Length = 388 Score = 307 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 156/391 (39%), Gaps = 17/391 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N+ VK+ N VY I + ++ IA + L+ +VT + +++ L+ + Sbjct: 2 KGNNLSDVKKANRQVVYECIWSHKAVTMTDIAYMTHLSRPTVTSLVQEMTADNLVVKSGY 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSK-VLAEEHYPLPERTQQTLE 126 S GGR + +A+G+ L + + +L + + + + + Sbjct: 62 GTSNGGRNPVLYHANAGAAYAMGIDLEFPKVRMAISNLECENICFSVRVYPRDSDKDQMI 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGK-IHYMPHIQVENWGLVEALEER 185 L + I L+ + + +PG++D + + EN + + ++ Sbjct: 122 RLLKQQMDDLIQDSGIDRSRLLGVGMGIPGVIDYKQNHSVLFERIEGWENVPIGDIIQRY 181 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 ++ +D+ L+ AE +D ++ + + + G G I ++G + G GN G I Sbjct: 182 VGKPVYICNDVNLLSWAERKAAHLEDVQNMLYIVIRSGIGMAIWTDGSLMQGEMGNSGRI 241 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ V+ G C CG+ GCL + A+ + L + + + A Sbjct: 242 GHMTVDKNGLECKCGSRGCLGLYTSEKAMMRIYSELTGKEIKQ--------AGDLVPLAE 293 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK--VLLPAIESCINTQA 363 GD A +V E GR+LG I NLF+ ++V ++ + +L + ++ + Sbjct: 294 SGDKAALQVFETCGRYLGIGIVNVANLFDISEVV----VSASFDVSYILRNAQYALDVRK 349 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 + R + + L +G LV Sbjct: 350 MNTIRREVKIREGLLAESGFGLGGCLLVLDK 380 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 8/312 (2%) Query: 90 GVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLRELI 148 + LG L D +LA R +T+ +++++ Q ++ K +L Sbjct: 8 AIDLGGTKIYSVLADSKGDILAHTRLETRAREGSETVMDQMVSSVDQLLEKSGGKKEQLA 67 Query: 149 AISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 I V + G D + + + P++ + + L+++ + +D + AL E G Sbjct: 68 KIGVCIAGFYDWEKRLLIHSPNMAGWSDVDVESRLQDKLGIPVIAENDANAAALGESRRG 127 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A Q D + + V G GAG+I++G+I+ G G GE GH+ V+P G C CG GCLET Sbjct: 128 AGQGSGDMVFITVSTGIGAGLITDGKIYRGSRGFAGEAGHMVVKPDGPLCGCGRRGCLET 187 Query: 268 IAANAAIEQRVLNLLKQGYQSRVPL-----DDCTIKTICKAANKGDSLASEVIEYVGRHL 322 +A+ AI + ++ G ++ + T + AA K D LA EV++ +L Sbjct: 188 VASGTAIARIANEQMQNGRKTILSEITAQNSKVTAPDVFAAAKKKDPLAQEVLQGAIHYL 247 Query: 323 GKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS 382 G + +NL NPQ IVI G + EA L + I A+ ++ + ++EL + Sbjct: 248 GIGLVNLVNLLNPQVIVIGGGVAEAGDDLFVPLRQIIAEHAVPPAAASVTLRKAELGVEA 307 Query: 383 AI-GAFALVKRA 393 + G L+ + Sbjct: 308 GVAGMLCLLTES 319 >UniRef50_B2GIX7 Putative NagC family transcriptional regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GIX7_KOCRD Length = 421 Score = 307 bits (787), Expect = 6e-82, Method: Composition-based stats. Identities = 98/394 (24%), Positives = 173/394 (43%), Gaps = 15/394 (3%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 + G+ ++ N V + G +++ +IA ++ LAP++V+ I ++L L Sbjct: 35 GADRASAPGSQAALRLANRRRVVDAVRGLGAVTQARIARETALAPSTVSSIVKELTACDL 94 Query: 62 IKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PER 120 + + GGRR + H +GV +G + L DL+ ++LA+ L P Sbjct: 95 LT---VEPDHGGRRGQRVRFSASAGHLLGVDVGHRHVAVALADLNLEILAQRRAELSPRH 151 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLV 179 + + + D ++ + LP VD + + + Sbjct: 152 GAREVLDVARGMADELRDELGIPAERVLRAGIGLPAPVDAQGRGLDSAVILPHWSGLDVR 211 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 E V +D + A++EH GA + D ++V G GAG++ G ++ G Sbjct: 212 ELAAHVLGCPVVVENDANAGAVSEHALGAGRGARDMAYLKVSHGVGAGLVLGGTLYRGAT 271 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGHI ++ C CGN GCLET ++AA+ + V S P++ + Sbjct: 272 GAAGEIGHITLDERAGLCRCGNRGCLETFVSSAAVLELVR-------PSGQPVESVS--D 322 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + AA GD S V+ GR +G +A NL NP+ +V+ G++ A ++LL + + + Sbjct: 323 VVDAALAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPELVVLGGDLARAGELLLEPLRTAV 382 Query: 360 NTQALKAFRTNLPVVRSELDHRSAIGAFALVKRA 393 + L + + VV SEL R+ + L+ R Sbjct: 383 DRYTLHGS-SPVRVVPSELGPRAHLTGALLLARE 415 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 84/383 (21%), Positives = 178/383 (46%), Gaps = 12/383 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 K N +R + + S+++I++ ++ +VTKI + + LI E GR+ Sbjct: 10 KLRNENRTFRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGTNNGKLGRK 69 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQ 135 AI + +IG+++ + ++ L +L K+L + + ++N + + Sbjct: 70 AIKYQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEFINSENFVFLVINELKK 129 Query: 136 FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHD 195 F+ + +K + I ++LPG+V+P++ I + + N + E +EE F + F+ ++ Sbjct: 130 FLWEFDKK-EFIKGIGIVLPGIVNPENNMIKLGGNFSLLNQDMKE-IEEEFGLPIFLENE 187 Query: 196 IRSLALAEHYFGAS--QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 + A+ E+ S Q ++ + V + G G+GII +++ G+ GEIGHI + P Sbjct: 188 ANAGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSGEIGHIPIIPN 247 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G++C CG+ GCLE +N A+ + ++ + + I + G+ + Sbjct: 248 GDKCACGSEGCLEQYCSNLALMKE--------FEKEFQCEIKEYEDIFQEKFIGNEKGKK 299 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 ++E L I A+ + N KI+I G+I++ + P ++ I + + + ++ Sbjct: 300 ILERYTWILALGIKTALMMLNSDKIIIGGKISDYKEYFEPMLKEIIFSNNIFSNDADILE 359 Query: 374 VRSELDHRSAIGAFALVKRAMLN 396 S D+ + +GA + Sbjct: 360 FSSLSDNANLLGAAFIPLGEFYK 382 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 175/364 (48%), Gaps = 9/364 (2%) Query: 36 IQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETR-NFHAIGVRLG 94 +++ + + S++KI +L+E L+ E STGGRRAI + N + + V + Sbjct: 27 AELSGLTNKSIPSISKIVNELLEDKLLIEDGLAPSTGGRRAIHYALNAKLNCYILTVAID 86 Query: 95 RHDATITLFDLSSKVLA-EEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVI 153 +H ++ ++DL +K + + +++ I + + + ++ I V Sbjct: 87 QHYTSVIVYDLHNKEVTPVHTIENHLDHPEEAFSNIVSLINELLTKHHLSADNILGIGVS 146 Query: 154 LPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCE 213 +PG VD SG Q+ + + + E F + F+ +D ++A+AE FG +++ Sbjct: 147 MPGFVDNVSGTNGSFKDFQL--FNIKKEFERVFAIPTFIENDSTAIAIAEQNFGKAKEIS 204 Query: 214 DSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAA 273 ++++ V G G GII + ++F G +G GE HI + + C CG GCLE A+ +A Sbjct: 205 HALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGCLEVEASLSA 264 Query: 274 IEQRVLNLLKQGYQSRVPLDDC-----TIKTICKAANKGDSLASEVIEYVGRHLGKTIAI 328 + L G +S + +D + + AA GD LA + LGK IA Sbjct: 265 AVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSAYMLGKGIAT 324 Query: 329 AINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFA 388 I++ NPQKI+I+G EA K+L+P I++ I+ + + S++ + IG + Sbjct: 325 LIHIMNPQKIIISGRGAEAGKILMPQIQTAIHEFCIPKISNKTVLEISDMKNAQLIGTAS 384 Query: 389 LVKR 392 +V Sbjct: 385 IVFE 388 >UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWX4_STRM9 Length = 388 Score = 306 bits (785), Expect = 8e-82, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 184/388 (47%), Gaps = 11/388 (2%) Query: 15 VKQLNSAA--VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +K+LN + LI + ++R+ ++ + ++PA+++K ++LIE L+ E D +S G Sbjct: 1 MKRLNETEYEILELISKNHCVTRMDLSLKLNISPAAISKTMKKLIEENLVLEDDTLSSKG 60 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR + + IG+ G I++ + ++ + Q L L + Sbjct: 61 GRPRKILKINSEYKKVIGINFGPGFIYISVSKIDGSIIETRKKKFQFKVSQKLITLLTDE 120 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 + + Y + E++ I + + G+V+ G + PH++ N L E LE +F + V Sbjct: 121 LDLLFERYNK--NEILGIGLAVNGIVNTRDGSSIFSPHLKWSNIKLREYLENKFNLPVIV 178 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D+R++ AE Y + + + + + G G+ I+ N +IF G N GEIGH + P Sbjct: 179 DNDVRAMLKAEIY--KVKKLSNVMYIYIRDGIGSSIMINNKIFEGVNFCTGEIGHFIINP 236 Query: 253 -LGERCHCGNFGCLETIAANAAIEQRVL-NLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 RC CG +GCLE ++ I +V+ L KQG + + + T K I + A+ G+ Sbjct: 237 TSNSRCQCGKYGCLEAEYSSKMIRNKVIWELEKQGIE--LENNYITYKEIFEKASFGEEP 294 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 +++ +G T+ +N+ + I+IAG+I A + L E I+ +F + Sbjct: 295 YKAIVKEASIKIGSTVGNILNVLDIGNIIIAGDILHAKNIFLKNFEKGIDLMKTHSFESM 354 Query: 371 LPVVRSELDHRS-AIGAFALVKRAMLNG 397 + + +E GA LV + +G Sbjct: 355 VNIYTTEFGDDVEKYGAIFLVIMNLFSG 382 >UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318_DEIGD Length = 400 Score = 306 bits (785), Expect = 9e-82, Method: Composition-based stats. Identities = 88/400 (22%), Positives = 162/400 (40%), Gaps = 21/400 (5%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 A+ G+ +KQLN +AV LI + ISR ++A ++QL +V + ++L+++G + E Sbjct: 7 HARAGDQGFLKQLNRSAVLELIRREPGISRAELAARTQLTKVTVGAMVQELLDQGWLVEG 66 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 Q + GR ++ R +G +G + L+ + L + +P T + Sbjct: 67 SLQQGSLGRPGRALHLNERRHVLLGAEVGVQGLRVVACTLTGRALGQRAILVPSTTPEAT 126 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE-- 183 L I + + + RE++ + V +PG V + + P++ + + L+ Sbjct: 127 AQHLATLIMEVLTYPEVAGREVLGLGVAVPGPVALHDPTLLFAPNLGWRDVPFLTVLKPF 186 Query: 184 -ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGR---IFIGRN 239 + ++ ++ A E YF E + + G G+G++ + G Sbjct: 187 LPDLPGPWLLENEAKAAAFGEVYFSGGDKPELLAYLSLGTGIGSGLMVGAPVPYLLRGAQ 246 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGH ++ G CHCGN GC ET+ + AI R + G L Sbjct: 247 GLAGEIGHSVLQSGGLYCHCGNRGCAETLVSGWAI--RAALDIPPGVPLEPALQP----- 299 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 D+ + G LG + + NP IV+ G +T + LL + Sbjct: 300 -----RMQDADVQVTLRRAGEALGMLLTNLHHTLNPSDIVLGGSLTRLGEPLLGPALAFF 354 Query: 360 NTQALKAFRTNLPV---VRSELDHRSAIGAFALVKRAMLN 396 + + +R++ A GA A V ++ + Sbjct: 355 REHQHDLYTRTASISIHIRTDSTFLPARGAAAQVLASVFH 394 >UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATI4_STRRD Length = 457 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 113/426 (26%), Positives = 176/426 (41%), Gaps = 33/426 (7%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 GG AQ +++ N + V R + +G SR IAE + L A+V+ + +L+ER L++ Sbjct: 12 GGAAQPAGHASLRRTNLSLVLRHLRDHGSSSRADIAEATGLHRATVSNLMAELLERRLVR 71 Query: 64 EVD-QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE--R 120 EV + A T GR ++ + + +G+ + + DL +VL E Sbjct: 72 EVGIEHAGTVGRPRRAVALDGAHVGVLGLEINVDYVAVHGTDLGGRVLVERRVGFDAMGS 131 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLR-------------------------ELIAISVILP 155 L Q ID R + I V +P Sbjct: 132 GTNHSLRELGRVARQAIDELTRAGAGPSGLGPGDLAAAGASGIAAAGGGIRVAGIGVAVP 191 Query: 156 GLVDPDSGKIHYMPHIQVENWGLVEALEERFK---VTCFVGHDIRSLALAEHYFGASQDC 212 GLVD G + P++ + L L V +D ALAE+ G + Sbjct: 192 GLVDVGHGVVALAPNLGWRDVSLASRLSVALGDVRAPVTVDNDANLAALAEYTSGVAAGT 251 Query: 213 EDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANA 272 D + + G G GII GR+ G +G GE+GH+ V+P G RC CG GC ET A Sbjct: 252 ADMVYLTGEVGVGGGIIVGGRLLRGADGFSGEVGHMPVDPGGSRCGCGRSGCWETKVGLA 311 Query: 273 AIEQRVLNLLKQGYQSR-VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAIN 331 A+ + G + VP + + I + GD L + VGR LG +I +N Sbjct: 312 ALVRMATPDQAYGMGTTPVPDPEERVAEIARGLAGGDPLMLAAVAEVGRWLGLGGSILVN 371 Query: 332 LFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA-IGAFALV 390 LFNP+ IV+ G + LLP ++ + + V S+L +A +GA +V Sbjct: 372 LFNPRVIVVGGYFATLARWLLPFAQAELEDLVVAGPAARCRFVASDLGFGAASLGAANVV 431 Query: 391 KRAMLN 396 +++ Sbjct: 432 INQLID 437 >UniRef50_B2Q2V0 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q2V0_PROST Length = 402 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 125/393 (31%), Positives = 215/393 (54%), Gaps = 4/393 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q G++D +KQLN+ VYR+IDQYGPISRI +++QSQLAPAS+TKITR+LI+ L+KE++ Sbjct: 4 QTGHIDQIKQLNTGIVYRVIDQYGPISRIALSKQSQLAPASITKITRELIDAHLVKEIEF 63 Query: 68 QA-STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 GR AI +V E+ + + +RL + +++L +++++ + E+ YP + + Sbjct: 64 PVLGLRGRPAIGLVIESEGWQFLSIRLACNSISLSLKEINTQTIVEQDYPFDVKGNEQFS 123 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + L + I+ F +Y R L + AIS++L GLV+P SG I+ +P+ ++N L L E+ Sbjct: 124 NTLSSLISHFFATYSRHLERVTAISIVLDGLVEPFSGVIYALPYYDIDNLPLGHFLTEQT 183 Query: 187 KVTCFVGHDIRSLALAEHY-FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + ++ + +LALA+++ + ++ I +++ A II+NG Sbjct: 184 GLPTYIQPYVNALALADYFSLYEKRTAKNIIYLQIDCVVSAAIINNGIALDSHTRRAIHF 243 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+Q + GE C+CG GCLE A AI + + L S D TI + C A Sbjct: 244 GHVQTQNTGETCYCGGIGCLEGAIAIPAILKHAVELQHLYPSSSFFNHDITIDSFCLAVE 303 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 D L V+ + + L K + IN+F + I+I + V + ++Q++ Sbjct: 304 DQDPLCLHVLNDIAQILAKQLGQLINIFGTELILINSPLNRISSVFYSLLHQYCHSQSIP 363 Query: 366 AFRTNLPVVRSELDHRSAIGAFALVKRAMLNGI 398 +R L + +SE+ + + ALV++A+ +G Sbjct: 364 LYRGELRIEQSEVTKKES--ETALVQQALYDGS 394 >UniRef50_D1NUM3 Transcriptional repressor in the Rok family protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUM3_9BIFI Length = 417 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 165/383 (43%), Gaps = 6/383 (1%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 + + N + V + +GP+SR IA+ +L PA+++KIT +LIE GL++E G R Sbjct: 29 LSEHNRSRVLHHVYHHGPVSRATIAKALELTPAAISKITAKLIEAGLLEETGDMQGEGRR 88 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 R+I + FH V+ R I ++DL+ L+ + E TQ L+ + Sbjct: 89 RSIGLRMNKSAFHVASVKFARTLVCIGVYDLAGNQLSMQEITAVEHTQ---IPETLDTVH 145 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVG 193 ++ K R +IAI + +PG G+ + +Q ++ V F+ Sbjct: 146 SMLEKLLAKDRRIIAIGMAVPGPYLRAVGRTAMVSSMQEWRAVNFIDEFSHSLSVPVFIE 205 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 D R+ L+ FG + G G G+I G G EIGH+ ++ Sbjct: 206 QDARAGVLSYRLFGQGDADRHLAYYLLGEGVGLGVIDGDETINGELGAATEIGHVSIDVN 265 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G C CGN GCLE + +I + + + + + + + A G+S A Sbjct: 266 GRSCECGNVGCLERYCSAVSIHEELNESGIVADSESMTHREAC-EALFRLAASGNSQAVA 324 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 +++ +G ++G IN FNP +I++ ++ +LL AI ++ + L + Sbjct: 325 MVQRIGTYVGYGAVTIINTFNPSRIIVGDIVSGGGDLLLSAIRRVVDARILPELNARTTI 384 Query: 374 VRSELD-HRSAIGAFALVKRAML 395 V ++ S GA + L Sbjct: 385 VLADASADASTKGAAGVAVEHFL 407 >UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobacterium dentium RepID=D2Q6V0_9BIFI Length = 390 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 171/392 (43%), Gaps = 15/392 (3%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + G+ +++ N A + I ++G +++I++AE + L+ +V+ QL+E G ++ Sbjct: 1 MARRTNGSQTSLRRANKANLLESIHKFGAMTQIELAEITGLSTGTVSTQVHQLVEEGKLE 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 + + GRRA + +G+ + R D + + D S ++AE PLP + Sbjct: 61 THNTIRN--GRRATLVALSHDQGLGVGLSITRRDLFLVIIDYSKDIIAEHRLPLPPKHKA 118 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEA 181 T + I + +++ E++ I V L VD + + + + Sbjct: 119 DTTLERAIRLINETLENAGTDAGEIVGIGVALGAPVDFHAQTAAIPGILPGWDGIDIHTP 178 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L F V V +D + A+ E G + ++ + + + G G+GI+ NG I G G Sbjct: 179 LTTAFHVPVMVDNDANAAAICEARMGVALGKQNFVYIGTNDGVGSGIMVNGDIMHGVTGL 238 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GEIGHIQV+PLG C CGN GCL TI A + + V + T++ + Sbjct: 239 AGEIGHIQVDPLGSICSCGNRGCLNTIVDEARLVSLL----------SVTHGNMTMEDLV 288 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + AN GD VI +G + +P+ +V+ G + + + + Sbjct: 289 QTANAGDPGCRRVIADAAVRIGTVASDLCISVDPEMVVVGGSLAMSGDTFIEPFSETLQR 348 Query: 362 QALKAFRTNLPVVRSEL-DHRSAIGAFALVKR 392 T + V+ ++ D SA+GA +V Sbjct: 349 LLFPNALTPIQVLAAQYPDSGSALGAAIMVIE 380 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 109/397 (27%), Positives = 180/397 (45%), Gaps = 7/397 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++ ++ ++A + +L+ + +R+ IA ++ ++++ I +LI GL++E + + S Sbjct: 10 DLAAIRARHTALLLQLLWERD-RARVDIARDLGMSRSAISSIVSELIGVGLVQEGNTRGS 68 Query: 71 TG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHA 128 GRRA + R + + LG + L DL + LA P H Sbjct: 69 GRAGRRATLLSLNARAAALLAIDLGASHVRMDLMDLRCRTLASRTVPHEVISGPAETYHL 128 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFK 187 LL + + + +PG VD D+G++ P++ + + EAL+ Sbjct: 129 LLRLADAVQREAHVPADHVALVGLGVPGPVDQDTGRVIRPPNMPGWDGEPVREALQRHLG 188 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + V +D A AE FG + D I V+ G GAG++ GR+ G G GEIGH Sbjct: 189 LEVLVDNDANLGAQAEARFGPHRGVSDLIYVKAATGIGAGVLLGGRLHRGVRGGAGEIGH 248 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 I + G GN G LE+ AA + G + + D T+ + + A Sbjct: 249 ISINEQGPVGRSGNPGSLESYAAAQVLVATAEARRAAGAPTLLT-DPVTLPALVRHAET- 306 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D LA E+ E VG HLG I+ A+NLFNP +VI G + EA V L A+ S ++ ++ Sbjct: 307 DPLARELWEDVGHHLGVAISTALNLFNPAVVVIGGRLAEAGPVFLNAVRSSALSRTMQIN 366 Query: 368 RTNLPVVRSELDHRSA-IGAFALVKRAMLNGILLQHL 403 + S L + +GA A++ +L L HL Sbjct: 367 AERTRIDLSTLGGDAGVLGAGAMMLDQLLTSSGLPHL 403 >UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q736_CATAD Length = 402 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 101/404 (25%), Positives = 173/404 (42%), Gaps = 19/404 (4%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 +AQ DL + N A + + +R +A S L+ A+++ + LI GL+ Sbjct: 2 TSRAQKTTRDL-RWHNRADLLTRLYLGEATNRNDLARASGLSAATISNVVSDLIGDGLVG 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP--LPERT 121 E Q+S GGR + H +G+ +G + + LFD + +AEE P +P Sbjct: 61 ENGSQSSAGGRPRSLLRVLPAFGHVVGIDIGETEIRVGLFDWTLHPVAEEARPVDIPRVP 120 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 Q + +L+ IA + +L+ + + +PG G + + P + L Sbjct: 121 PQQVADQVLSEIAAVTARAGIAVDDLLGVGIGVPG----AGGSVIHAPTLGWSAVPLAGL 176 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L +R T + + +L AE + GA++ E ++ + + G G + + G G Sbjct: 177 LRDRLGFTPDIDNGAMALGQAEAWRGAARGAERAVALLLGTGAGGAL----SLAAGPGGR 232 Query: 242 V----GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 E GH V+ G C CG GCLET AI R + ++ Sbjct: 233 ARSFTMEWGHTVVDLEGPHCRCGARGCLETYIGAEAILARYAATPGSTPLAEDGVEAQLS 292 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA--DKVLLPAI 355 + + +A+ +S A EV++ +LG I+ INL P +++I+G D LLPA+ Sbjct: 293 ELVARASQHHESAALEVLDATATYLGVGISNLINLVAPDRVIISGWAGALLCDAALLPAV 352 Query: 356 ESCINTQALKAFRTNLPVVRSELDHRS-AIGAFAL-VKRAMLNG 397 + AL + + EL + A+GA L V R + +G Sbjct: 353 RRVVRRHALPYLQEFTRIEPGELGPSATALGAATLPVARLLADG 396 >UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY82_9CLOT Length = 400 Score = 303 bits (778), Expect = 6e-81, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 174/396 (43%), Gaps = 17/396 (4%) Query: 13 DLVKQL-NSAA-VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++++L N +I + G I++ I + + ++ ++ + L ++ LI E S Sbjct: 3 KILRELSNRELETLDIIQKKGLITKKSIQAITGMTLTTLNRVMKSLEDKKLISEAGISKS 62 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHAL 129 TGGR+A+ +AIGV + R I + +L +L ++ + + + + + + Sbjct: 63 TGGRKAVKYDVAQSGIYAIGVDMSRTYVRIVILNLKMTILEKKEFFMDDSFSPEKTVEKI 122 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ---VENWGLVEALEERF 186 N I + + E++ I + G +D + G + + N + + E+R Sbjct: 123 GNIIDEGLLKLSIDKSEVLGIGIGTVGPLDREKGVMINPKNFFNELWSNVPIRDMFEKRT 182 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + CF+ + + LAE+ FG +D ++ + V G + +I+NG I + Sbjct: 183 SLPCFIDNGTNAAVLAEYLFGKGKDFKNIVYVHCGIGIRSAVINNGIIIRTMRDSEDAFA 242 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK-QGYQSRVPLDDCTIKTICKAAN 305 H+ V+ GE C CGN GCL++ ++ AI + ++LK + + + K I + Sbjct: 243 HMVVDFNGEECSCGNKGCLDSYSSINAIVKSFNSILKNNNNDTNEEIKEEDYKKILELTV 302 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA-IESCINTQAL 364 + A E+I LG +A + + NPQ +++ G + + K+ I++ + L Sbjct: 303 NNNKSAVEIINKGAEILGVGLANMVRILNPQLVILYGPLIKNYKLYYNKCIDAFNKSNCL 362 Query: 365 KAFRTNLPVVRSEL----DHRSAIGAFALVKRAMLN 396 V+ S+ + A+G+ +V L Sbjct: 363 NN-----EVIFSDGGEFKGNAIAVGSGLIVIENYLK 393 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 303 bits (778), Expect = 6e-81, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 10/372 (2%) Query: 26 LIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE--VDQQASTGGRRAISIVTET 83 ++ GP+SR+ +A + ++ A+VTK R ++ G + E ++ A GR + Sbjct: 22 MVLTEGPLSRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITP 81 Query: 84 RNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRK 143 IGV++ + + DL +++ H LP+ T+ L + + +D+ Sbjct: 82 DREFVIGVKVTADEVIGVVADLKARIRNSAHRQLPDCEPATVLATLAALVEELLDADPEL 141 Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAE 203 + + V + G VD G + P + ++ L + + + V +D+++L +AE Sbjct: 142 RGKTRRMGVAVSGDVDRVRGVVRLSPLLGWQDVDLAGPVGDATGLVVVVENDVKALTVAE 201 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFG 263 H+FG +D LV V G G GI++ GR+ G G GE+GH+ V+ G CHCG G Sbjct: 202 HWFGDGVGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGARG 261 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLG 323 C+E IAA AI R L + D T + A G + G +G Sbjct: 262 CVEAIAATEAIVGRARLLTGR--------DGLTFTEAAELARSGSPEVCALFSEAGTAIG 313 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA 383 I +NL P++IV++GE +A + I T A A +R A Sbjct: 314 LAITAVVNLIGPERIVVSGEGLDAYDLFETEIRQAYATHAFGAAARCPLTIRPLPFEEWA 373 Query: 384 IGAFALVKRAML 395 GA A+ + + Sbjct: 374 RGAAAVGIQTLF 385 >UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN99_9FIRM Length = 450 Score = 303 bits (777), Expect = 7e-81, Method: Composition-based stats. Identities = 92/400 (23%), Positives = 175/400 (43%), Gaps = 17/400 (4%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ--Q 68 N++ VK N +A+ +L++ +G +SR IA + L PA+VT I QL+ G++ E + + Sbjct: 56 NLENVKVSNRSAILKLLNDHGAMSRKDIALELGLTPATVTLICTQLLSAGILVEKGEMEE 115 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEH 127 GR+ +SI + + + V + + I++ DL +++A Q Sbjct: 116 EKRAGRKKVSIDINYQYKYVLSVSIEAPETCISISDLKGRLIAGRKLKTDGALEPQVFLK 175 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + + + ++ + LPG V D+G + I E + E ++ Sbjct: 176 QVADEGKSLMWEQGISKESVLGAGISLPGPVKRDTGVSLHAYRIWNEAVPVGEYMKMYLD 235 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + V +++++ A E +G ++ E+ + ++ G G+ II +I+ +N EIGH Sbjct: 236 LPVVVENNVKAFAEGELIYGTGKNQENLLFIKWGPGVGSAIIIQNKIYDSQNSKTAEIGH 295 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTIC 301 VEP G C CG GCLET A A+ +RV + + ++ ++ + Sbjct: 296 YIVEPGGLPCRCGRRGCLETHVATHAMAERVRRACTKESMPGLYAFVDGDVEKIEVRNME 355 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + D ++I+ + L +T+ I L P K++I G + E + I+ Sbjct: 356 QWIEIEDPGLQKIIDDIVERLARTVVNTITLLAPDKVIIYGFMFE-----MDHIQKRFLD 410 Query: 362 QA--LKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGI 398 + +++S L R IG A+V M G+ Sbjct: 411 FCTYYDSLYDGDYILKSGLSDRIGYIGPLAIVVNEMFLGM 450 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 303 bits (777), Expect = 7e-81, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 177/404 (43%), Gaps = 8/404 (1%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 + + +N V RLI + G +SR +A + L +V+ + +LIERGL+ E Sbjct: 5 GEKATRQHTRDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELIERGLVIETG 64 Query: 67 QQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 G GR + + + + + L L V + +T Sbjct: 65 LATGGGIGRTPMLLSVAEWSRPVAAISVNADSVEGALVSLRGNVGRRISRSIQGQTGADA 124 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 + L + + I + + L+ I V PGL++ SG I ++ + L + L ER Sbjct: 125 LNTLQETLDELIQTANQP---LLGIGVTTPGLINASSGMIVRAVGLEWADLPLGQLLHER 181 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + + V +D + LALAEH FG + + +++++ +G GAGI+ NG+++ G GEI Sbjct: 182 YGLPVKVVNDSQCLALAEHLFGEWRGVANLVVLKIGKGVGAGIVLNGQLYAGEGFGAGEI 241 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP--LDDCTIKTICKA 303 GH+ G C CGN GCLET+ + A+ + + S + D ++ I + Sbjct: 242 GHLAFTANGLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLGRIAEG 301 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD +A VI G +A I+L + + ++I G IT + + + +A Sbjct: 302 AAMGDPVAQHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRREVAQRA 361 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQHLLEN 406 L A + + + + IGA A V L G++ H E Sbjct: 362 LPALVRDTEIRLAPAPTITPLIGAAAPVLTGEL-GLIRLHRREE 404 >UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSD8_ACIC1 Length = 420 Score = 303 bits (777), Expect = 8e-81, Method: Composition-based stats. Identities = 103/396 (26%), Positives = 179/396 (45%), Gaps = 12/396 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 A + LI + ++R ++ + S ++ + L+ GLI E + STGGR + Sbjct: 15 LAQLLALIRRGSAVTRSELVQSSGFGRTAIARRLDHLMALGLIAESEPLPSTGGRMPRGV 74 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFID 138 + LG + DL +VL+ ++ L +++ + Sbjct: 75 YFRADAGRLLVAELGATSIAAGICDLDCRVLSSREEAWDIAAGPESTLARLEALLSELLR 134 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIR 197 +Q K + I V LPG ++ +G+ P + + + + E L +RF +V +D+ Sbjct: 135 DHQAK---VWGIGVGLPGPIEFATGRPVSPPIMPGWDRYPVRERLAKRFSAPVWVDNDVN 191 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV-EPLGER 256 LAL E G + D I +++ G GAGI+S GR+ G G G+IGH+ V + Sbjct: 192 VLALGELRAGVGRAHSDLIYIKIGTGIGAGIVSGGRLHRGAQGCAGDIGHVAVTDDQAVV 251 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTICKAANKGDSLA 311 C CGN GCLE +A AA+ +R ++G + D T TI A GD+ Sbjct: 252 CRCGNIGCLEAVAGGAALARRATAWAREGRSGYLQQRLTEGGDLTAATIAAGAAAGDTGC 311 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 E++ R +G ++A +N FNP ++I G + +A L +I + +++L +L Sbjct: 312 VELLAAAARQIGDSLATFVNFFNPSIVIIGGGVAQAGNAFLASIRQRVYSRSLPLATRDL 371 Query: 372 PVVRSELDHRSA-IGAFALVKRAMLNGILLQHLLEN 406 +V S L IGA +V +L+ +L ++ Sbjct: 372 QIVLSSLGDIGGLIGAAHMVVDEILSPKVLSLWIKE 407 >UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q6P6_CATAD Length = 429 Score = 303 bits (777), Expect = 8e-81, Method: Composition-based stats. Identities = 92/391 (23%), Positives = 159/391 (40%), Gaps = 32/391 (8%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV--------- 65 +++ V +++ SR ++ + L+ A+V+ + LI GL+ E Sbjct: 18 LREEGRLRVLQVLLASTTTSRPELVRLTGLSRATVSVLVADLISAGLVVEENGANGSGGS 77 Query: 66 -------------DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAE 112 + ++ + GR A+ + +AIG +G + L DL + E Sbjct: 78 SGSSGSGGSSGTPEAESRSMGRPALPLALNRSVAYAIGADIGHAHVRVALCDLHGTPVWE 137 Query: 113 EHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI 171 +R + + + + ++ + V + VD D Sbjct: 138 TSRAKEVDRAPHETLDLAADLVRRALTENGVSGERVLGLGVGIAAPVDADGALSAEGIMP 197 Query: 172 QVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISN 231 LE R + + +D + ALAEH +GA +D ED + +R+ G GAG+I+ Sbjct: 198 GWTGIRPGPELERRTGLATELTNDANAGALAEHMYGAGRDIEDMVYIRLSAGIGAGVIAA 257 Query: 232 GRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP 291 GR+ G G GEIGH+ G C CGN GCLETIA+ A+ + LL+ + V Sbjct: 258 GRLQRGAGGLAGEIGHLPAVRDGLVCRCGNRGCLETIASPVAVAR----LLQDSWGEPVA 313 Query: 292 LDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVL 351 D + G + V+E G +G+ +A + L NP+ IV+ G++ + L Sbjct: 314 PGD-----LPALLAAGTPGTARVVEDTGEAVGRALAGLVTLLNPRLIVVGGDLAAIGEPL 368 Query: 352 LPAIESCINTQALKAFRTNLPVVRSELDHRS 382 + I AL + + VV L + Sbjct: 369 FEPLRRGIARYALPSAARQVAVVAGRLGSSA 399 >UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C4_ENTGA Length = 388 Score = 303 bits (777), Expect = 9e-81, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 160/391 (40%), Gaps = 22/391 (5%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST--GG 73 + N + LI +SR ++ + L A+ + I ++LIE L+ E+ S+ GG Sbjct: 13 RTKNESLCLELIMNNHNLSRADLSTMTGLTKATTSAIVKKLIEDQLVIEIGTGESSNVGG 72 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 R+ I + ++ +I + +G + L L + + + T++ Sbjct: 73 RKPIILQYNGKSGLSISIDIGYNYINGLLAFLDGEEVQSIQKKPIHLDEHTIKDHFTELF 132 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 F S +I + + + G V G + + PH ++ + EE ++ Sbjct: 133 NHFKKSLPETYYGIIGVVIAVHGPV--HEGNVIFTPHHELAQIPFRDIAEELVDYPVYLE 190 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 ++ AL E+ F S I + +H G GAGI+ NG + G NG GEIGH V Sbjct: 191 NEANLSALGEYTF--SSKSSSLICINMHSGIGAGIVQNGILQTGTNGLAGEIGHQIVVLD 248 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G C CGN GCLE AAN ++ N+ +D + + D A Sbjct: 249 GIECPCGNHGCLEMYAANKVCFEKFANI--------KSMDYVNAIILREYYQNNDPDAIH 300 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 V E +L I + ++P+ I++ + ++ + ++++ F + V Sbjct: 301 VTEENVHYLSAGINNLVVHYDPEVIILNSSLYHEIPDMIGQLTKSLHSR----FSEKVIV 356 Query: 374 VRSELDHRSA-IGAFALVKRAMLNGILLQHL 403 S LD ++ +G + LN ++HL Sbjct: 357 RSSLLDEKATLLGGLVFNLQRFLN---IKHL 384 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 93/365 (25%), Positives = 177/365 (48%), Gaps = 9/365 (2%) Query: 39 AEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDA 98 A + + + + L++ G++ EV Q S+GGRRA ++ +GV + Sbjct: 2 ARRLAYSKSKANAMVAALLDEGVLDEVGLQESSGGRRAETLRLSESLGAVLGVDMDATSM 61 Query: 99 TITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGL 157 + L VLA + + R + L + + + +LIAI + +PG Sbjct: 62 QLALMRPDMAVLARQCETIDVRRGPGVILAQLCGLMRELMARCGLSSSQLIAIGMGVPGP 121 Query: 158 VDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSI 216 VD SG++ P + + + + + L E F FV +D+ +AL + + + D + Sbjct: 122 VDFASGQLVNPPLMPDWDGFSIRDYLREAFVAPVFVDNDVNLMALGKLWR-LQRTLSDFL 180 Query: 217 LVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ 276 +++V G G GI+ +G+++ G NG+ G++GHI V+ G RCHCGN GC+E +AA A+ + Sbjct: 181 VIKVGTGIGCGIVCHGQVYRGTNGSAGDVGHICVDQAGPRCHCGNQGCVEAMAAAPALVR 240 Query: 277 RVLNLLKQGYQSRVPL-----DDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAIN 331 + + ++G S + I+ + +A+ GD A+ +I+ G +G+ +A +N Sbjct: 241 AAIEVAQKGESSWLAERLQASGSLGIEDLAQASRVGDVAANILIQRAGSLVGQMLASVVN 300 Query: 332 LFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL-DHRSAIGAFALV 390 FNP + I G + + + L ++ + ++L +L + + L D + +GA L Sbjct: 301 FFNPSHVFIGGLVADMGPLFLASVRQSVYHRSLALSTRHLEIQCAPLADDAALVGAGVLA 360 Query: 391 KRAML 395 + L Sbjct: 361 MQESL 365 >UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV97_9CLOT Length = 406 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 77/369 (20%), Positives = 166/369 (44%), Gaps = 8/369 (2%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 + +I ISR + + + + ++V I LI G++ E D + GR+ + + Sbjct: 15 RNKILNIIRSNENISRYDVKKMTMYSMSTVLDIIDDLIASGMVYEADCEEPRVGRKPVWL 74 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFID 138 + IG + D + +++ + L P++ + + L+ I ID Sbjct: 75 RLNPEGGYFIGAEFNAFHLHCAMLDFTGEIIYQSEEDLLPDQGKDAILALLIRHIHAAID 134 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIR 197 + + K ++ AISV +PG ++ D + EN + + LE+ F + C++ +++ Sbjct: 135 AVKGKPGQIFAISVGIPGYLNEDKSIALSHFRLKDWENVPVKKILEDEFHLPCYLDNNVN 194 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 +A A + + DC D + V + G + N + + R G GE+GH++V P G C Sbjct: 195 VMAFAYKWLRYNGDCRDFLFVSIRTGVRIVPVINNHLILSRGGLSGELGHVKVAPHGTLC 254 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLA 311 CG GCL + ++ +I ++ + G + D T++ C++A + S + Sbjct: 255 SCGGIGCLNSEISDLSILGKLKAGFEFGRFPEIMEMAGGDPDKVTLEMFCESAAQEHSDS 314 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 +++ + LG+ + +A+N+ P+ +V++G++ + + I + ++ L Sbjct: 315 VKLMLDLANILGEALGMAVNILAPEVVVLSGQLAQLGEPFFQEISKVLERNVVQEIYQGL 374 Query: 372 PVVRSELDH 380 V S + Sbjct: 375 KVTASVFNE 383 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 182/393 (46%), Gaps = 7/393 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE--- 64 + + + ++ N + + +GPI+R+ + + +L+PA+VT IT +L + + E Sbjct: 2 KKTDTEQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEHPA 61 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQ 122 ++ +T GR + I FH +G++L ++ + L + +V E L R ++ Sbjct: 62 TTEKTNTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTRALSE 121 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + L A+ +A+ +F ++ + A+ + + G+V+ +G+I + P + V L L Sbjct: 122 EGLFDAIASAVRRF-NASVPAHKRPKALGIAVQGVVNGLNGEIIWSPALAVRKVPLKHEL 180 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E+R ++ + +D L +A + Q D ++ + G G G++ NG +++G +G Sbjct: 181 EQRIQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGAA 240 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 E GH + P G +C CG GC+E + A+ + L + + + + +++ + Sbjct: 241 AEFGHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALFPLSWDNSLHPTEDSMQVLVN 300 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A ++ + GR LG I+ I L + +KI+I+G + A ++ + + + Sbjct: 301 KAESDSKELRDLFQRAGRVLGHGISNLIALLSLEKIIISGPGSRAYHLMEAGLMTNLEDS 360 Query: 363 ALKAFRTNLPVVRSELDHRSAI-GAFALVKRAM 394 + + + D I G L A+ Sbjct: 361 LVSDLIAETTIEHAAWDEDMTIKGIVVLALEAI 393 >UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavida DSM 17836 RepID=D2Q094_9ACTO Length = 423 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 132/318 (41%), Gaps = 15/318 (4%) Query: 86 FHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLR 145 IG+ +G + D +L P + + E A+ + Sbjct: 30 ALTIGIDIGGTKVAAGVVDPEGNILDRLRRDTPTKDPKETEDAIAEVVHDL-----ESRH 84 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 ++IA+ + G VD + + PH+ + L +A+E R + V +D + A +E Sbjct: 85 DVIAVGIGAAGFVDGTRSSVLFAPHLAWRHEPLRDAVERRLGLPVVVENDANAAAWSEWR 144 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 FG Q + V + G G I+++G + G+ G GE GH+QV P G RC CGN GC Sbjct: 145 FGGGQGESHLVCVTLGTGIGGAILNDGALQRGKFGIAGEFGHMQVVPGGHRCECGNRGCW 204 Query: 266 ETIAANAAIEQRVLNLLKQG--------YQSRVPLDDCTIKTICKAANKGDSLASEVIEY 317 E A+ A+ + L G + + + A GD +A E++E Sbjct: 205 EQYASGNALTREARELALSGSPVAHNLLRAAEGDPRRINGPMVTELAKDGDPVAVELLED 264 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL-KAFRTNLPVVRS 376 VGR LG +A +P VI G +++A ++LL + FR +VR+ Sbjct: 265 VGRWLGIGLANLAAALDPGTFVIGGGVSDAGELLLAPAREAFKRTLTGRGFRPEARIVRA 324 Query: 377 ELDHRSA-IGAFALVKRA 393 L + +GA L + Sbjct: 325 VLGPEAGMVGAADLAREE 342 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 12/307 (3%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLR 145 +AIG+ +G I L +V + P + + + + AI + + Sbjct: 3 YAIGIDIGGTKTAIGLIGTDGEVRTKVSLPTDQTVGPEVMVDRMAAAIQDILTAQGIAES 62 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 EL+ I V PG ++ GKI P++ N+ +V++L+ F + + +D + ALAE Sbjct: 63 ELLGIGVGAPGPLNTKEGKIAEPPNLRGWWNFPIVDSLKRYFSLPIRLENDATAAALAEK 122 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + GA++D E + + + G GAGI S+G++ G +GN G++GHI V+P C CG GC Sbjct: 123 WLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGNAGDVGHIVVDPSVGTCVCGQKGC 182 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 E +A+ A+ ++ LL + + + K A G + E++ V ++G Sbjct: 183 WEFVASGTAVARQASELLGR---------EVSSKEAFDLAAAGQPVIQELVAKVFENIGV 233 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA- 383 IN F+P+K+VI G +++ L A+ ++ AL P+V + L + Sbjct: 234 GCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVSKYALNPSGRQTPIVPAALHQDAGL 293 Query: 384 IGAFALV 390 IGA AL+ Sbjct: 294 IGAAALI 300 >UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L9I3_RUMHA Length = 393 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 82/355 (23%), Positives = 158/355 (44%), Gaps = 15/355 (4%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS----TG 72 Q N + + I + P++R IA+Q+Q+ PA+VT I+ I+ G+I+E+ + + + Sbjct: 4 QENRSTILEYIFRNAPVARSTIAKQTQITPATVTSISGNFIQEGIIQEIGAEDNAADCSP 63 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I + +A+G+ ++ +L + + + + E + + Sbjct: 64 GRKRILLDIVPDKVYAMGIEFTSRHIRFSICNLRGDTVFQSSFSVKETDNGNITDFIAEK 123 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 + ++ + + +PG +D K+ + + EAL++R + Sbjct: 124 AEDILKENPSFAASIVGMGIAVPGHIDAHQDKVITNSSL-CPQFS-GEALKKRLNIPIIC 181 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +++R +A + F S + V G +I N ++F G N GEIGH V P Sbjct: 182 ENNVRCMAFGRYLFDRSS-PDTFAFFHVGAGMFCALIENSKLFQGTNYYAGEIGHTIVNP 240 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTICKAANKG 307 G++C CG +GCL+T + + + L + + +P D TI+ I A + G Sbjct: 241 NGKKCECGKYGCLQTYCSETWLLKYCRLLYESNADTILPSLKPCADALTIEDISNAFSLG 300 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEI---TEADKVLLPAIESCI 359 D+L I ++LG T++ + NP KI + G + TE + L+ I + Sbjct: 301 DTLVGNYISTALKYLGITVSNLAIITNPDKIYLHGNLFSNTEIKEELMDYITKQL 355 >UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL5_9FIRM Length = 380 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 71/375 (18%), Positives = 158/375 (42%), Gaps = 13/375 (3%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 + +I +SR +IA + ++P S T+I L E GL++++ ++ GR+A+ + E Sbjct: 4 ILDIIRDSREVSRSEIARMTGMSPTSATRIVGSLEECGLVRDMAAVSNGVGRKAVMLDVE 63 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT--QQTLEHALLNAIAQFIDSY 140 F+ IG+ + + + + + +++A P P + + + + Sbjct: 64 ENAFYCIGLDISETNLKLCILNFGGQIVARGAAPAPGDSFQPEEVVEIFYRMYQRLAIQA 123 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLA 200 + + ++ AI G VD +G++ + I+ + + + +E RF + +V +D++ Sbjct: 124 KIPMEKVAAIGAGAVGTVDSKTGEVIFGDLIRWSHVPIGQMIEARFGLPTYVDNDVKCAI 183 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP-LGERCHC 259 + + + +D +L+ G G +I GR+ G + GEIGH V+ G C C Sbjct: 184 IGDCSTPPIKGADDVVLLSFGCGVGGAVIHRGRLVRGSINSAGEIGHTIVDYTDGRLCSC 243 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 G GC I Q+ ++ +++ I A + + A +++ + Sbjct: 244 GRRGCAAAYLTKDQIIQQA---------AKSCPGISSLEEIMAAWERREPWAEALLDRIS 294 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 ++ T++ A NP+ +++ G++ L + + R +RS L Sbjct: 295 TYMAITVSNAACFLNPRNMILGGKLMNESPFLFDLVLEKYSAMMYPPLRGATTFIRSPLG 354 Query: 380 HRSA-IGAFALVKRA 393 + +G + Sbjct: 355 TDATCVGGAMIAVEK 369 >UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KQ9_SYMTH Length = 391 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 171/388 (44%), Gaps = 13/388 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + N L+KQLN AV I GPISR+++A + L+ +VT I R L++ GL++E Sbjct: 1 MPRPANARLMKQLNRQAVLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEK 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 S+GGR I ++ + V L L DLS + E L Sbjct: 61 GLGQSSGGRPPIMLLFNPAARFVLAVCLEGERLWGGLADLSGALQVEAEGVLSPDPHDP- 119 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQV-ENWGLVEALEE 184 ++ + + ID + L A++V +PG + G + + P + + L + L + Sbjct: 120 ARSVCDFLQGLIDRSGVEASRLAAVAVGVPG-IAHTEGTVSHAPSLGWWQEVPLRDRLRQ 178 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 F V V +D+ +AL E++ GA + L+ V G GAGI+ +G +F G GE Sbjct: 179 CFGVPVVVENDVNLMALGEYFQGAGVGVANLALMHVSEGIGAGILIDGNLFRGARNAAGE 238 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 +G++ + PL R +FG E ++ AI Q++ L + D ++ + + A Sbjct: 239 VGYLPLGPLSPR-RPQDFGLFELHYSSRAIRQQLQAALPEAPGD----DGRPVRRLRELA 293 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 G A + RH +A + NP+ +++AG+ + + L + + Sbjct: 294 EAGLPWARSLFGDALRHWAHAVASITCILNPELVLLAGDAVDCGREGLSEVNRIVADLV- 352 Query: 365 KAFRTNLPVVRSELDHRSAI-GAFALVK 391 + + L R+A+ GA A+ Sbjct: 353 ---PDPPEIRFAVLGSRAALTGAVAMAL 377 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 91/319 (28%), Positives = 158/319 (49%), Gaps = 9/319 (2%) Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA-LLNAIAQFIDSYQ 141 + ++ +GV +G + + +++ + P ++ L + +A+ + + + Sbjct: 2 SDRWY-VGVDVGGTTIKMAFLTTAGEIVDKWEIPTNKQDGGALITTNIADALDKRLSGHH 60 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLAL 201 + +LI I + PG ++ D+G I++ +I ++ L + LEE K+ V +D AL Sbjct: 61 KSKSDLIGIGLGAPGFIEMDTGFIYHAVNIGWRDFPLKDKLEEETKLPVIVDNDANIAAL 120 Query: 202 AEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP-LGERCHCG 260 E + GA ++ +L+ + G G GI++NG I G NG GEIGHI V P G C+CG Sbjct: 121 GEMWKGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITVIPEGGAPCNCG 180 Query: 261 NFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD-----DCTIKTICKAANKGDSLASEVI 315 GCLET+A+ I + + + +S++ LD T K + AA+ D+ A V+ Sbjct: 181 KTGCLETVASATGIARIATEGVTEHKESQLALDYDKHGVLTAKDVFSAADASDAFALSVV 240 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 +++ +LG IA N NP+KIVI G +++A LL I+ AL Sbjct: 241 DHIAYYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPIKQHFEAYALPRVADGAEFRI 300 Query: 376 SELDHRSA-IGAFALVKRA 393 + L + + IG LVK+ Sbjct: 301 ATLGNDAGVIGGGWLVKQQ 319 >UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH81_KOSOT Length = 386 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 174/395 (44%), Gaps = 19/395 (4%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA-S 70 + N+ + ++ + ISR++++ + L +V+ I ++ + G+++E + Sbjct: 6 PKDTRIKNAITLLHILLKQDGISRVELSRITGLTKTTVSSIIKEFLAAGIVEESPTKPNG 65 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEH-YPLPERTQQTLEHAL 129 G+ IS+ + + +GV LGRH+ L D S KVL E + + ++ L Sbjct: 66 NVGKTPISLHIKKNAVYTLGVHLGRHNIKTVLMDASMKVLMESNGLSYKKNDPDSVLEKL 125 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKV 188 I ++ ++ ++ I + +PG +DP++G I P N L E +++++K+ Sbjct: 126 YLDINHIMEKAEKHGIKVGVIGIGIPGPLDPETGVIKCPPKFEGWINIPLGEIIQKKYKL 185 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ +D ALAE + G ++ ++ + + V+ G GAG++ N ++ G + VGEIGH Sbjct: 186 PVWIENDANVAALAEKWHGGAKYLKNFVYILVNEGIGAGVVINDELYQGTHDYVGEIGHS 245 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 G F LE + + ++ + L+ +I+ + + Sbjct: 246 LFYVH------GQFKYLEDLYGVDVLTSQIKS---------CGLNAHSIEDVANLLKADN 290 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 + ++ + L + I+L NPQ + I G + L+ ++ ++ Sbjct: 291 KIVYSIVRDSAKWLSIVVLNVIHLLNPQAVFIGGTMAALGNYLIQPVKEIVSQYLFGDQE 350 Query: 369 TNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHL 403 T++ + D+ AIGA L ++H+ Sbjct: 351 TDVKLSEIS-DNAVAIGAGIYATAKWLEAKSIEHV 384 >UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG9_9FIRM Length = 322 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 78/320 (24%), Positives = 154/320 (48%), Gaps = 11/320 (3%) Query: 85 NFHAIGVRLGRHDATITLFDLSSKVLAEEHY---PLPERTQQTLEHALLNAIAQFIDSYQ 141 + + + + +G T LF K++ + Y ++ + + ++ +Q Sbjct: 2 SKYYLIMDIGGTKTTGALFTEDGKIVDDYTYVSKSPTFEGKEAVYQNTRGVLDHIVERFQ 61 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLAL 201 L++++ I V PG +D G I + P ++ +N+ LVE L F++ + +D AL Sbjct: 62 VDLKDVLGIGVGCPGPLDSRKGIIIHAPLMRWKNFPLVERLSHDFQLPVALDNDGNLGAL 121 Query: 202 AEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGN 261 AE G ++ ++ + + V G G G++ NG I+ G++ GE+GH+ ++P G C CG Sbjct: 122 AEQRCGVAKGLDNVMYMTVSTGCGGGLVINGEIYHGKHDGAGEVGHMSIDPEGLDCPCGG 181 Query: 262 FGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVI 315 GC E A+ A+ +R+ + G +S V + + +AA KGD+ A Sbjct: 182 KGCFELYASGTAMNRRMREDMAAGKKSMVFELAQHDPKKIEGRLLTEAAEKGDTYALAFF 241 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 + +LG I+ NL++P+ +V+ G +T+A + I ++ L+ + + Sbjct: 242 KQQAYYLGVGISNLFNLYDPEVLVLGGGVTKAKAFYHDEMMRVIRSRCLQPVEDD-SIRY 300 Query: 376 SELDHRSAI-GAFALVKRAM 394 S ++ R + GA+ L+K + Sbjct: 301 SVMNDRVVLYGAYHLIKDKL 320 >UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetales RepID=Q0SE61_RHOSR Length = 400 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 14/387 (3%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 V+ LI +R +I + L+ +V L GL+ E ++ STGGR + + Sbjct: 19 VFALIRAGQATTRTEIGTLTGLSRTAVAARVSSLQASGLVVEREEGVSTGGRPPVKLSFH 78 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVL-AEEHYPLPERTQQTLEHALLNAIAQFIDSYQ 141 + + +GR + + DL+ V+ AE+ + L + + +S Sbjct: 79 VQAGVVLSAAIGRSRTQLAICDLAGDVIVAEDVEQEIGTSPAELMPVIAQRLIALRESLG 138 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLA 200 + I + LPG VD + G P + + L L + FV +D + Sbjct: 139 ETAGRTVGIGISLPGTVDTERGCSLNSPMMSGWDGVPLQPFLADVTDAPVFVDNDANVMV 198 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI-QVEPLGERCHC 259 LAE G +D D +L++ G GAG++S G + G G GEIGH G C C Sbjct: 199 LAERR-GERRDFADMLLIKASTGLGAGLVSGGVLQRGALGAAGEIGHTKTAAAQGVVCRC 257 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 G+ GC+E +A A+ + + + + I+ + A GD+ A +I G Sbjct: 258 GDVGCIEAVAGGWALVRNLQEQGR---------EVTHIRDVITLALAGDAEARRMIRESG 308 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 R +G+ ++ AINL NP+ +++ G++ +A + + + A+ L ++ Sbjct: 309 RQIGEVLSGAINLLNPEVVIVGGDMAQAYDTFVAGLRETLYGNAIAVATQQLQILPWTHG 368 Query: 380 HRSA-IGAFALVKRAMLNGILLQHLLE 405 S +G+ + +L+ + LL Sbjct: 369 ELSGVVGSATMALDHVLSVRAVDRLLA 395 >UniRef50_C0B3V0 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V0_9ENTR Length = 335 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 112/331 (33%), Positives = 193/331 (58%), Gaps = 1/331 (0%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q ++D VKQ N V+RLID++GPISRI ++++++LAPAS+TKITR+L+E LI E + Sbjct: 4 QPSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKAELAPASITKITRELVEAHLIHETEF 63 Query: 68 QAST-GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 GR A+ + E++ + + +R+ + + +L +L SK++ E+ + P+ Sbjct: 64 PDVGFRGRPAVGLKLESQGWQFLCIRVNKGNLLFSLRELDSKLVTEDTFDFPKEYSDDFL 123 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + L AI +F + YQ + L AIS+ + +VDP SG I+ P+ +++ L + + E+ Sbjct: 124 NHFLVAIDKFFERYQSHVERLTAISITMNAIVDPISGVIYSSPYYDIKDIPLADKIHEKT 183 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V+ F+ H + + +AE+ +GA+++ D + + + GAG+ISNG+ + + EIG Sbjct: 184 GVSVFLQHSVTAWTMAEYLYGAAKNNLDVLQIVIDDIVGAGVISNGKTLHSHSHSAVEIG 243 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H +V C+CG GCLET A + ++ L ++ S + T++T+C A Sbjct: 244 HTKVIDSENSCYCGAKGCLETEIAIPQLIKKAQLLAQEDPTSLLNKYPITVETLCDAILV 303 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQK 337 GD A E++ V + LG +A+ IN+FNPQK Sbjct: 304 GDKSALEIVNLVAQRLGFILAVMINIFNPQK 334 >UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2A3_9CLOT Length = 397 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 101/387 (26%), Positives = 171/387 (44%), Gaps = 15/387 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ---QASTGGRRA 76 + I GPISRI I+ ++ + PA+V++IT +I+ LI E+ + + + GR+ Sbjct: 11 RFKILDKIYAKGPISRIDISNETGITPATVSEITGNMIQENLIHEIGEVIPEENKSGRKK 70 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL--EHALLNAIA 134 I + + IG L + L D K+ E+ L + + E +N ++ Sbjct: 71 ILLGISPNHSFYIGTELSPKYISFCLTDNIGKIYKEKTIQLDNSNLEEILSEEFYINKLS 130 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 FIDS I + LPG D + I + +N+ + L ERF + + + Sbjct: 131 SFIDSC--TNYNPKGIGIALPGHFDEVNKSII-TNNSFWKNFDIT-ILLERFDLPIYFEN 186 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 +++ + L+E F + + ++ I V RG + NG ++ N VGEIGHI V P G Sbjct: 187 NVKCMTLSERLFSFNGNDDNFIFFHVGRGMFCSYMYNGELYAKDNFLVGEIGHIVVHPNG 246 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL-----DDCTIKTICKAANKGDS 309 E C CG GCL+T + A I ++ L + + + TI+TI KA GD Sbjct: 247 ELCECGKRGCLQTYGSEAWIIKKSQILFDNSETTYLKQLVSERNKITIETILKAYRLGDE 306 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 +++ +L TI + + KI+I GE+ D + E L + Sbjct: 307 GIIKILNSAINYLSITINNLSMMIDSSKIIIHGELFNEDLLKNLLEELLKQNINLLSKNI 366 Query: 370 NLPVVRSELDH-RSAIGAFALVKRAML 395 ++ E ++ A+ A AL +L Sbjct: 367 KQDILLKEYNNYNGALAAAALCVSKLL 393 >UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGR1_9MICO Length = 421 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 184/392 (46%), Gaps = 7/392 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-QQA 69 + ++ N + R + +G SR +A ++ L+ A+ + + L ERGL++E + +A Sbjct: 23 DQAQMRAANMGLILRQLQLHGGRSRAGLATETGLSKATTSSLIADLAERGLVREGEIHRA 82 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEH 127 + GR +++ + R +G+ + +T DL+ V+ E P+ PE + + Sbjct: 83 GSVGRPGLTVNLDGRRVAGLGLEISIDYVAVTAVDLTGNVIRESITPMDVPELAVEVVLD 142 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + + ++S + ++ +V PG++D D+G + + P++ + L L ER Sbjct: 143 RVAGIAQRMLESLRSAGHIVVGFTVAPPGVIDYDAGIVRFAPNLGWRSVALAAGLSERIG 202 Query: 188 VTC---FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 C + +D + A+AE+ A + +D + + G GAGII+ GR+ G +G GE Sbjct: 203 PECPEIHLENDAKLAAVAEYGAYADSEVQDLVYLSGEVGVGAGIIAEGRLVRGWSGFSGE 262 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 +GH+ + P C CG GC E + + + + SR +DD ++ + + A Sbjct: 263 VGHLALGPSELECSCGRRGCWELVVGLHHFLRLAAPVGDVVHDSRRSMDD-RLEILRERA 321 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD E + + R L + +++ +++ NP++IV+ G + LL ++S ++ + + Sbjct: 322 ASGDERTLEALAAIARDLIRGLSVLVDVLNPRRIVLGGYFAPFGEQLLAPVKSALDERRM 381 Query: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRAMLN 396 A + V + ++ G A+ Sbjct: 382 DAGSEVVVAVSALGLSAASRGGALAALEAVFE 413 >UniRef50_Q185Y3 Putative regulator of a specific sugar metabolism n=6 Tax=Clostridium difficile RepID=Q185Y3_CLOD6 Length = 404 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 88/402 (21%), Positives = 176/402 (43%), Gaps = 8/402 (1%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 Q N+ VK N + +L+ P+SR+ +A+ + L +++ + +LI +I+ Sbjct: 2 MSNKQGSNIKDVKIKNKLIILKLLSTNTPMSRVDLAKSTGLTKMTLSNLVTELINENMIR 61 Query: 64 EVDQQ---ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 E++ A + GR+ I + + G+ + R+ + + DL ++ + P+ Sbjct: 62 EIESSTLNAHSSGRKPILLDISNISPCICGILIRRNICKVIISDLKGNIVKQLSETYPKC 121 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLV 179 + ++ + F + R++I I + G VD +G I P V N +V Sbjct: 122 LSNDVLKDIIKRM--FTKIMKINKRDIIGIGISSIGPVDDINGTILNPPDFGNVSNLNIV 179 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 + ++E + F+ +D S ALAE +G ++ + I + + G GAG++ ++ G Sbjct: 180 DFIKEMSDLPIFLINDANSGALAEKMYGLGKNISNYIYLHIMNGIGAGLVLENKLHTGNL 239 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS-RVPLDDCTIK 298 G GEIGH + G C CGN GCL+ + + + +R+ +L S + D ++ Sbjct: 240 GQSGEIGHTSINFSGPLCSCGNNGCLDYYTSVSNLIKRIESLSHIYPNSPLINCKDFSLV 299 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + AN DSLA +++ ++ + + L + I+I + + + Sbjct: 300 KLIDEANNKDSLAMFLLDEFCTYVSYALVNTLTLIDCSSIIIGYDFNIPGTFIENTLLKK 359 Query: 359 INTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLNGIL 399 + A + + V S + IG+ A+V NG + Sbjct: 360 LTASASFSKYKKISVRHSNFGANAPLIGSIAIVSYNFFNGSI 401 >UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFQ9_9ACTN Length = 405 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 166/396 (41%), Gaps = 14/396 (3%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 + V V+Q N + R + G SR IA +S L+ ASVT + +LI GL+ E Sbjct: 10 SAPATVSDVRQRNRSQALRSVILTGETSRAAIARESGLSVASVTNLISELISEGLVMEAG 69 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ-QTL 125 AS+GGR + + +G +G + LFDLS + E E + + Sbjct: 70 SVASSGGRPVTLLAPNPSGAYFLGADVGERGVAVELFDLSMTRIDREFRGGREGEPIEAI 129 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLV--DPDSGKIHYMPHIQVENWGLVEALE 183 L A+ + +I I + LPG+V D + ++ Y + + + + Sbjct: 130 AADLDEALNALRERNPAAWDRMIGIGLGLPGIVESDAEGRQVLYAQSLGWSPIPVADLVS 189 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 + F + ++ A+AE + GA++ ++++V + RG G I+SNG + G N + G Sbjct: 190 H--DIPVFAENGAKTQAMAELWDGAARGVNEALVVLLGRGVGLAIVSNGELARGLNSSAG 247 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E GH+++ G C CG GC+E AI + D + + Sbjct: 248 EWGHVKIVRNGRLCRCGGRGCVEAYLGADAILELWREA-------GGVFDGSGWGAVGQL 300 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCINTQ 362 D +A V++ + LG + +NL NP++++I G + + L +E + Sbjct: 301 LESHDPVAVGVVDELIETLGSALGGLVNLTNPERVIIGGWVGLRLMEALASRMEEATRAE 360 Query: 363 ALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAMLNG 397 AL + A+GA + A+L Sbjct: 361 ALARPGGQFSLHACSFGGDTVALGAAIMPLEALLAA 396 >UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIY1_9ACTO Length = 423 Score = 300 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 9/382 (2%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 + L+ +SR+++AE S L A++T + R+LI+ GL+ EV ++ G+ + Sbjct: 33 GRMLDLLRTRSTLSRVELAELSGLTQATITHVVRRLIDGGLVLEVGREQQGRGQPRRLLE 92 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHALLNAIAQFIDS 139 ++A+GV++ R TI + D + + +A + AL + I + S Sbjct: 93 LNADAWYAVGVQVDRTTTTIVVIDFAGRRVATAGFRGTGTSGPDAAVSALADHIDDLLHS 152 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYM-PHIQVENWGLVEALEERFKVTCFVGHDIRS 198 +I + ++ G D + G + P + L L R + + +D + Sbjct: 153 TAVPRERVIGVGLVTHGPQDRERGMLLMAHPTPDWLQYPLTSTLSNRLGLPVLLENDATA 212 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCH 258 A E + G + L+ + G G GI++NG + GR N EIGH+ + C Sbjct: 213 AATGEQWSGTVP-TDTFGLIYLGSGLGGGIVANGNAYRGRASNAVEIGHVGLMGASAPCV 271 Query: 259 CGNFGCLETIAANAAIEQRVLN----LLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 CGN GC E A + +VL + G ++ + + +A D A+ + Sbjct: 272 CGNCGCAEAEAGPHTVVAQVLAHPDLAGRLGIKAHEEDTLADFERVARAWQADDPDATAI 331 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQALKAFRTNLPV 373 ++ R +G+ +NLF+ +V+AG + A + +E+ + AL + V Sbjct: 332 LQRSARWIGRAAVTMVNLFDLDTVVLAGPALISAGPLYQHFVEAELTRHALSRALSRPRV 391 Query: 374 VRSE-LDHRSAIGAFALVKRAM 394 + S +D +AIG V R++ Sbjct: 392 LLSANVDTAAAIGGALHVLRSI 413 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 300 bits (770), Expect = 6e-80, Method: Composition-based stats. Identities = 93/381 (24%), Positives = 164/381 (43%), Gaps = 15/381 (3%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ----QASTG 72 + + AV RL+ + G +SR IA L+ ++V+ I L+ L+ E+D Sbjct: 11 ERSRLAVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVELDAKLAPAGGGA 70 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLN 131 GR +++ + AIGV G + + +++ V + LP + Sbjct: 71 GRPGAAVMLNPASGEAIGVDFGYRHVHVIIANVAHAVRIAKSVRLPVGYDPAQGFDVASD 130 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 I ID ++ + V +PG D G + + L R + Sbjct: 131 LIRTAIDEAGTDPSRILGVGVSVPGPFDTKRGVPSSGMPSRWAGIPVATELAARLNLPVL 190 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 D R ALAE +GA++ C++ + +++H G G +SNG++ G NG GEIGH+ V+ Sbjct: 191 ADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGINGGAGEIGHLVVD 250 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 G C CGN GCLET + + + D T++ + A +GD Sbjct: 251 ATGPLCRCGNRGCLETFVGLPVVMRALEPAYG---------DRLTLRNVITMAWQGDRGC 301 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + G G+ + + N+ NPQ ++I G ++ A ++L+ + T +L + Sbjct: 302 IRALSDAGTMAGRAVGMLGNILNPQSVIIGGALSAAGELLMGPLREAAATASLPLAGDAM 361 Query: 372 PVVRSELDHRS-AIGAFALVK 391 + L ++ A+GA A+V Sbjct: 362 TLQVGSLGPQACALGAVAMVL 382 >UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LTZ1_ACIC1 Length = 436 Score = 300 bits (769), Expect = 7e-80, Method: Composition-based stats. Identities = 100/398 (25%), Positives = 171/398 (42%), Gaps = 16/398 (4%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + D+++Q N + + R + G +SR + L +++ + +L L+ E Sbjct: 1 MPGVATQDVIRQRNLSVLLRRLHVDGALSRADLTAAMGLNRSTIKALVEELAAMNLVTET 60 Query: 66 -DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQ 122 A GR + + + + +G T+ F L +LA YPL P + Sbjct: 61 IPGTAQRAGRPSHVVAVRCDTAYVLAANVGVDTVTVAAFGLGGHILARRDYPLGGPGASA 120 Query: 123 QTLEHALLNAIAQFIDSYQRKL-RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 + L A + +R R L+ I V +PG+V + G++ + P++ N Sbjct: 121 DAVIARLAAECAAIRSALERSPDRRLVGIGVAIPGMVHAEDGRVEFAPNLMWRNVPFAAP 180 Query: 182 LEERFKV--TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 L V +G+D ALAE GA + + + G G GII +GR+ +GR+ Sbjct: 181 LSAALDVDVPIRIGNDGDLGALAEQVRGAGRGVAHLVYIAGEVGIGGGIIVDGRLVLGRH 240 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGH+ V P G C CG GCLET AI + G Q+ Sbjct: 241 GFAGEIGHVMVHPDGRPCRCGGRGCLETEVGEEAILTACGRDPRAGRQAT--------HE 292 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + +AA +GD A + + ++ LG+ + IN+F+P+ ++I G ++ + P I + Sbjct: 293 VFEAARRGDRRAQDGLRHIAVWLGRGLGSIINVFDPEVVIIGGPLSSLLPLAEPVIREEL 352 Query: 360 NTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLN 396 L R ++ + L S++ GA L +L Sbjct: 353 AASTLP-HRRSVQIRPPGLGEDSSLFGAAELAFERLLE 389 >UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7J1_9RHOB Length = 402 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 93/375 (24%), Positives = 163/375 (43%), Gaps = 6/375 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + + + V++ N V + ++ ++R+ + + L+ A+VT IT L +RGLI EV Sbjct: 1 MIEKASREQVRRQNRFVVLSTLRRHTTLARVDLGRLTGLSLAAVTSITADLKDRGLIAEV 60 Query: 66 DQQ----ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT 121 ++Q A+T GR + H I V+L ++ L D + AE + + Sbjct: 61 EEQPNPDANTRGRPRTYLRLRDDVAHVITVKLSVDRVSLALVDYTGHQHAEAKFMVESSD 120 Query: 122 --QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV 179 L I + + + R ++ I+V G+V +G I + P I L Sbjct: 121 MGGDAFIALLAREIKALLKTEPLRARSVMEITVATQGIVGKHNGSIIWSPTIAERQVELT 180 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 L + +TC + +D +A A H A + + ++V + RG G GI ++ G Sbjct: 181 AKLSKTLGITCTLYNDTNMIAEALHRQDAEKYSGNFVVVYIDRGVGMGIFIKNALYRGET 240 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G E GH P G C CG GCLE A+ A+ + L K+ S + I+ Sbjct: 241 GAAAEYGHSPFTPDGAACRCGKKGCLEAYIADYALYREAQKLPKETSPSAMFYGPEYIQN 300 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + A GD+ A +V G LG ++A I+L +P +IV+ G+ +A + + + Sbjct: 301 LRARARVGDAQAQKVFTDAGFALGVSLARTISLLDPSRIVLTGKAMQAYDLFKHGMNKGL 360 Query: 360 NTQALKAFRTNLPVV 374 + L + + Sbjct: 361 ESSLLAPLLDAVNLE 375 >UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus faecalis RepID=C0X1R1_ENTFA Length = 388 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 169/391 (43%), Gaps = 19/391 (4%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I + +++ N A + I ++ ISR ++++ + L ASV+ IT +LI G I E Sbjct: 2 ISSKYTIREQNEAQILNQIIKHREISRAELSKITSLNKASVSSITNKLINDGFIIEKRIG 61 Query: 69 AST-GGRRAISIVTE-TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 +T GR+ I + + + I + LG + L L K + ++ ++ Sbjct: 62 EATNRGRKPIMLTFNGSSSALVIAIDLGYNYIDGALASLDGKEIHRVQLIDTYVNKKNVQ 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + Q ++ +++ L G V + I + + LVE L + + Sbjct: 122 DLIHKVFNQLTSDCPHTHYGIVGMTIALQGQVLNNK--IISTSYNDLAEINLVEMLNQEY 179 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 F+ ++ AL E+ F S D E+ + +H G G G++ NG++ +G G G++G Sbjct: 180 NFPVFLQNEANLSALGEYTF--SSDIENLASISLHSGIGVGLVKNGKLDVGNKGYAGQLG 237 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H + P G +C CGN GCLE + I + L+ + N Sbjct: 238 HTILFPNGRKCTCGNHGCLEKYCSTQVIYHEISK--------EKNLNKINSDVVSILYNN 289 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 +S ++IE +L + AI L+ P+ ++ +T+ ++ I+ +N Q Sbjct: 290 KESKVVKMIEQYAYYLSIGVNNAIMLYAPELVIFNSPLTKKIPDIINIIQRNLNNQ---- 345 Query: 367 FRTNLPVVRSELDHRSAI-GAFALVKRAMLN 396 F ++ V+ S ++ I GA +L + LN Sbjct: 346 FTKDVLVINSPIEWNPVISGAISLSIQKFLN 376 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 173/397 (43%), Gaps = 11/397 (2%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 G A+ GN +K N V +++ YGP+SR +IA ++ L+ + T I L GLI E Sbjct: 3 GTARGGNAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLIAE 62 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQ 123 +++ GRR I + G+ +GR L DLS++++A E Sbjct: 63 EKGESAGAGRRPGLIRLSPASPLVCGITIGRRRCEAVLADLSAQIVARESACYDNALDGP 122 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 L L ++ + R + I V G +D +G + P+ + + + L Sbjct: 123 RLSELLARLCSRLLKRVDRP---VAGIGVAALGPLDARAGTLLNPPNFYGIGHLPVRAIL 179 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + + C + HD+ + ALAE +GA Q E +++ G GAG++ +G +F G G Sbjct: 180 SDASGLPCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGVAGLS 239 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GE+GH+ + G +C CG GCLE A+ A+ + Sbjct: 240 GELGHVSINFEGPQCACGGRGCLECYASERALLAYAREYAAR----TGTAAPENWSDAIS 295 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA GD+ + +E ++ ++ A+ L + ++ + + +L +E +N + Sbjct: 296 AAGTGDAACAAALERYCGYVAAALSNALCLIDVHRVFVG-YDGDGGGLLERLLEQRVNER 354 Query: 363 ALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGI 398 A + V RS +++ GA AL R + +G Sbjct: 355 LHIAGCRRITVRRSSFGSDASVYGAAALAARCVFDGA 391 >UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=Clostridia RepID=A5CYL2_PELTS Length = 337 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 163/336 (48%), Gaps = 30/336 (8%) Query: 84 RNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHALLNAIAQFIDSYQR 142 +F+ IGV LG L +VL+E P R Q + +++++ Q ++ Sbjct: 2 NSFYVIGVDLGGTKIYTALAADDGRVLSEIKLPTEAGRGLQGVIDRIVHSVEQVRENVAV 61 Query: 143 KLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALA 202 ++++A+++ PG +D G IH+ P+++ N + + LEER + + +D AL Sbjct: 62 PPQKVLALALGAPGPLDTAGGVIHFAPNLRWNNVPIRQILEERLSLPVLLDNDANLAALG 121 Query: 203 EHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNF 262 EH FGA + C + + + V G G G+I +G+++ G + GEIGH+ V P G C CGN Sbjct: 122 EHVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAGEIGHMTVLPDGPVCSCGNR 181 Query: 263 GCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS------------- 309 GCLE +A+ AI + L+ G ++ AA GD Sbjct: 182 GCLEAMASGTAIARAAAELVASGGGRKIL-----------AAAGGDPGRINAAAVAAAAA 230 Query: 310 ----LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 A+ +I+ +LG +A +NL NP +V+ G + E + + + + +AL+ Sbjct: 231 GGDPEAAAIIDRAAGYLGIGVASILNLLNPAMVVLGGGVMEIGEPVWKGVRREVQARALQ 290 Query: 366 AFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGILL 400 A R+ +V +EL R+ + GA AL + + +G L Sbjct: 291 AARSRARLVPAELGGRAGVMGAIALALQEIADGNCL 326 >UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepID=B7GQ98_BIFLI Length = 404 Score = 298 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 164/364 (45%), Gaps = 5/364 (1%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 A + V + N + + + + G SR QIA+ +L PA++TKIT +LIE G+I+E Sbjct: 6 AHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETG 65 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 + RR+I + +T F IG++ R I +FDL L+ E+ P Sbjct: 66 DLEGSKNRRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPT---VYDNTI 122 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEER 185 + + I Q ++ ++AI + +PG + G+ + + ++ Sbjct: 123 NDTIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDEFATA 182 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCE-DSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 F+V F+ D R+ ALA + F S + + V G G G+I NGR+ G G E Sbjct: 183 FRVPVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAATE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IGHI ++ G C CGN GCLE + AI ++ + + + + A Sbjct: 243 IGHISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARALFAKA 302 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD A ++ V +++G N +NP+ I+I + EA +LL + + + +A+ Sbjct: 303 GDGDEAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAI 362 Query: 365 KAFR 368 Sbjct: 363 PEIN 366 >UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WTI5_RENSM Length = 403 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 94/384 (24%), Positives = 170/384 (44%), Gaps = 22/384 (5%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 +A+ LI SR +A + LAP+++T+ +LIE GLI E TGGRR + Sbjct: 30 SAILSLIASNPASSRADLARKLNLAPSTITQRINELIEAGLIAESGAGGHTGGRRPTLLS 89 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDS 139 + LG A + ++S +L + + + + A+ I+ Sbjct: 90 LVADAGCILAADLGAAHAWVGRLNMSCALLDSSLISIDISAGPEAVLPIISEAMRSLIED 149 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRS 198 LR + + LPG VD G + + + + + L F V +D Sbjct: 150 DTPPLR---GVGLALPGPVDFTRGMVDSPSRMRGWHQYPVRDWLSREFDTAASVDNDANM 206 Query: 199 LALAEHYFGASQDCE-----DSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +AL E+ Q+ + D++ ++ G G+I G+++ G +G G+I H+QV Sbjct: 207 MALGEYSLRQRQNPDTKNRTDTLFLKAGAAIGCGLILQGQLYRGASGTSGDIAHVQVSAA 266 Query: 254 GE-RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 GE C CG+ GCLET+A+ AI +++ ++ + + + A GD+ + Sbjct: 267 GELPCACGHRGCLETVASGTAIVSQLIEA---------GVEVKDLADVIRFALNGDTQTT 317 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 + GR LG+T++ +N NP +V+ G +++ + + AI S + NL Sbjct: 318 TRLRAAGRLLGQTLSTVVNFINPSLVVLGGGLSQVEPY-VAAIRSQLYAGCHPLAAKNLL 376 Query: 373 VVRSELDHRSA-IGAFALVKRAML 395 + S+ ++ +GA RA+L Sbjct: 377 IEPSQAGSQAGLLGAGQQCLRAVL 400 >UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridium acetobutylicum RepID=Q97D10_CLOAB Length = 385 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 176/380 (46%), Gaps = 12/380 (3%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 N + L+ + ++++ I+ + ++ +V +LI G ++E +STGGR+ I Sbjct: 9 NKGKILNLLYRKRELTKLDISNEIGVSVPTVISNVNELIREGFVEESGVASSTGGRKPII 68 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHALLNAIAQFI 137 + + +A GV + + A + L +L ++ + + + E + +++ + + + + Sbjct: 69 VSFIPNSRYAFGVDINPYMARVVLTNLDLEIKYDVEFLIEELKDIKSIMKRISLIVKEAL 128 Query: 138 DSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIR 197 + + ++++ I L G VD ++ + +I V++W E F+ F+ ++ Sbjct: 129 EFTKIDEKKVLGIGFSLQGTVDEENLVLKRAINIGVKDWDFK-LFENLFQFPLFIENEAN 187 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 + ALAE G +++ + + + V G G GI+ G+++ G+N GE+GH+ + P G+ C Sbjct: 188 AAALAELKIGIAKEERNLVYISVSSGLGTGIVIEGQLYKGKNKRAGEMGHMTLVPHGKLC 247 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEY 317 CG GC E A+ A+ L + ++ + +A + + Sbjct: 248 RCGRKGCWEMYASQKALLDEFNEL--------SDVKVTKLEQFFNLIMIKNKVAEKCLNN 299 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 +L I + +F+P IV+ GEI+ V L +++ I + R + + S Sbjct: 300 YLNNLASGIQNIVLIFDPHYIVLGGEISGYSDVYLDSLKDKIFDENEFYNRGDFKLFPSR 359 Query: 378 LDHRSAIGAFAL--VKRAML 395 L S+I AL +++A L Sbjct: 360 LKRNSSILGAALLPIQKAFL 379 >UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Micrococcaceae RepID=A9WVF3_RENSM Length = 426 Score = 296 bits (760), Expect = 7e-79, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 167/393 (42%), Gaps = 6/393 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYG-PISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + + N+ + N + + I + +SR+++A LA +V+ I R+L+++ LI E Sbjct: 18 RRRGTNLPRMGDFNLSVILDAIRRSPEGLSRVELAGIVGLAAQTVSNICRRLLDQNLIVE 77 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQ 123 + S G+ + +A+GV L + L DL+ V+ + P+ Q Sbjct: 78 AGKYGSGPGKPRTILRLNPGGMYAVGVHLDPVETNYALLDLTGAVVTTRTHLTQPDAEPQ 137 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 A+ I I + ++ + + PG +D +G I PH+ L E L Sbjct: 138 QTIDAMAEEIESIISEQNIERNKIAGLGIAAPGPIDGATGAIVEPPHMPGWGTVELRERL 197 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + ++ + D+ + A+AE + G I V + G G+G++ + + G +GN Sbjct: 198 HKAVELPVLLDKDVTAAAVAEIWAGGLSGSGSFIFVYIGTGIGSGLVLDDEVVRGSSGNA 257 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNL-LKQGYQSRVPLDDCTIKTIC 301 GE+GHI +P G C CG GC++ I K ++ + + Sbjct: 258 GEVGHIIADPDGPDCDCGKRGCVKVTCMPENIVAEAAAAGFKAVLDNKGKSLQVQMAALS 317 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIESCIN 360 +AA GD+ A ++++ +++ NL + +V G + + L + IN Sbjct: 318 EAALAGDAAAQKILDLAAERFATAVSVQANLLDVDHVVFGGPFWKHFEPTFLAKLPQRIN 377 Query: 361 TQALKAFRTNLPVVRSELDHR-SAIGAFALVKR 392 ++ + ++ VV + + A+GA LV Sbjct: 378 ERSATSKVHSVEVVGTGVGSDVGAVGAACLVLE 410 >UniRef50_C4Z4E9 N-acetylglucosamine repressor n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z4E9_EUBE2 Length = 378 Score = 296 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 164/393 (41%), Gaps = 20/393 (5%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 +Q VK+LN ++RLI ISR +IA+Q L+ +V + + L+E GLI+ V Sbjct: 4 SQKLTNTDVKKLNKNRIFRLIYNSDKISRQEIADQLGLSLPTVNQNLKMLMEDGLIEYVG 63 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 STGGRRA +I + AI V + + + L +++ Sbjct: 64 NFTSTGGRRAQAITIDNNARKAISVNIKADYINVDVVGLKGQIIYSMAVKAHFSKSSAYI 123 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 L +A+ +D +++ + + +PG++D + + P ++ +N+ + + Sbjct: 124 EKLKDAVRHAVDYVGADADDILGVGITVPGILDDEKQILISAPPLKAKNYDFTKLIS-AI 182 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V +D R+ A A+H+F + ++ I + + G G I+ I G + GE G Sbjct: 183 DYPVVVMNDARAEAYADHWF-NGKPEDEKIYIMLGEGVGGAYINASAIRNGVHNRGGEFG 241 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ + P G++C CG GC E + + + D T+ + A + Sbjct: 242 HMVIHPEGKQCLCGKKGCFEAYVSEKVLSSEL---------------DMTLDNFFELAVQ 286 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC-INTQALK 365 G+ S V++ +L I + + IV+ G + K +I+ +N + Sbjct: 287 GNKNNSNVLDEYMDNLALGINNIYTMMDCD-IVLGGTVAPYLKQYENSIKERLVNDYSFD 345 Query: 366 AFRTNLPVVRSELDHRSAIGAFALVKRAMLNGI 398 L + +S +GA ++G+ Sbjct: 346 TDADYLRI-SDGGGRKSGLGAALSFVARFIDGV 377 >UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobacterales RepID=C5RVI1_9THEO Length = 315 Score = 296 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 144/309 (46%), Gaps = 7/309 (2%) Query: 90 GVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLRELI 148 GV LG + L D ++ P E+ + + + ++ + KL +L Sbjct: 7 GVDLGGTKISTGLVDEKGNIIRSTKIPTMAEKGPEEVIKRIEQSVYDVLKEAGLKLSDLK 66 Query: 149 AISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 + + PG +D G + P++ +N +V+ L + V + +D + A+ EH FG Sbjct: 67 GVGIGSPGPLDAKRGVVISPPNLPGWDNVPIVDILSHKLGVKVKLENDANAAAIGEHLFG 126 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A + ++ + + V G G G+I G+++ G N N EIGH + G RC+CGN+GC E Sbjct: 127 AGKGIDNFVYITVSTGIGGGVIIEGKLYSGENSNAAEIGHHTINFNGPRCNCGNYGCFEA 186 Query: 268 IAANAAIEQRVLNLLKQGYQSRV----PLDDCTIKTICKAANKGDSLASEVIEYVGRHLG 323 A+ AI + ++ G + + + + +AA GD A E+++ +LG Sbjct: 187 FASGTAIARFAQEGIQNGKDTMIRDLAKDGVVKSEHVFEAAKLGDEFAKELVDNEAFYLG 246 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHR-S 382 I+ + +NP+KI I G ++ +L + I +ALK VVR+EL Sbjct: 247 VGISNIMAFYNPKKIAIGGGVSTQWDMLYDKMMETIKKKALKPNAEVCEVVRAELGENVG 306 Query: 383 AIGAFALVK 391 +GA AL+ Sbjct: 307 VLGAAALLL 315 >UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces RepID=C9ZFY3_STRSW Length = 406 Score = 296 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 94/401 (23%), Positives = 164/401 (40%), Gaps = 20/401 (4%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 G+ N +++ N A V ++ GP+SR +A + L A+V+ + +LI GL Sbjct: 11 GGSGRRLPDNQQGMRRRNLARVLHAVNAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGL 70 Query: 62 IKEVDQQ-ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 ++E+ + GR ++ R IG +G + DL +V A R Sbjct: 71 LEELGPERPGRVGRPGSALALSGRGPAGIGAEIGVDHLAVCAVDLRGEVRARAVRQGTNR 130 Query: 121 --TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL 178 + + + L + Q + + + ++V +PGLV D+ + P++ + L Sbjct: 131 GRSPEPVVDDLTRLVRQVVAEAESEGLWPAGLAVAVPGLVASDARTVVRAPNLDWHDTDL 190 Query: 179 VEALEERFKVT--CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 L V ++ LAE + G D + V G G ++ +GR+ Sbjct: 191 GALLPGGLPGGLPVTVDNEANFGGLAELWLGDG-TPPDFLHVSAEIGIGGAVVVDGRLLR 249 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT 296 G G GE+GH+ V P G C CG GCLE A A+ + + + Sbjct: 250 GTRGFAGELGHVPVRPEGPACACGGRGCLEQYAGEEAVLRAA----------GLEPAEHR 299 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 ++ + + A GD + G LG + A+NL +P+ +V+ G + LLP++E Sbjct: 300 VEFLAERAAAGDKEVHRALRGAGTALGIALTGAVNLLDPETVVLGGALAALAPWLLPSLE 359 Query: 357 SCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 + + V S L +GA V RA+L+ Sbjct: 360 RELARRT---AGPACAVTVSRLGSDGPLLGAAHSVVRAVLD 397 >UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5VW31_BRUO2 Length = 402 Score = 296 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 86/372 (23%), Positives = 155/372 (41%), Gaps = 29/372 (7%) Query: 18 LNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-----QQASTG 72 ++ V +++ GP SR ++A + L+ ++T +T QL++ G I E D + Sbjct: 3 IHLGMVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMP 62 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ-TLEHALLN 131 GR +S+ + GV +G + + DL+++++ + L H + Sbjct: 63 GRPPVSVRLVPSAHYVAGVYIGAEAVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTAD 122 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + + + L L+ I + +PG VD + + + +A+E + Sbjct: 123 VLRNLVQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSINTGWRDVAFADAMEAELNIPTV 182 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V H++ ++ALAE ++G Q C + V + G ++ +G F E+GHIQ++ Sbjct: 183 VEHNVTAMALAEAHYGIGQGCPAVLYVYLGTG----LVVDGMPFRPGGHGAVELGHIQID 238 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 P G C CGN GCLET + + +R G S PL AA + Sbjct: 239 PQGALCACGNRGCLETFVSERVLRER-------GAGSAEPLL---------AALARNPTL 282 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + V H +A A+NL P IV+ G EA + + + + L R L Sbjct: 283 H---DEVAGHFTTALANAVNLLTPDLIVLGGHFAEAPEAFYARLRCDLPPRVLPHMRDVL 339 Query: 372 PVVRSELDHRSA 383 + R + + Sbjct: 340 RIERGGFGNNAG 351 >UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID=C5C1Z1_BEUC1 Length = 403 Score = 296 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 174/386 (45%), Gaps = 16/386 (4%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 + +L+ +R + ++ + +++ L+ GL+ V +ASTGGR + + Sbjct: 26 LLQLLRDGRARTRADLVAETGQSRSTIATRVDALLATGLVASVGSRASTGGRPPTAFAFD 85 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQ 141 + +GV LG + + DL+ +LAE P+ + + + + +D Sbjct: 86 PTSRVVLGVDLGAAHGRLAVTDLAGSILAEHAEPVRISDAPEKVLGWVARTGHELLDRAG 145 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLA 200 R +L + + LPG V+ +G+ P + + L F V +D+ +A Sbjct: 146 RPSTDLAGLGLGLPGPVEHSTGRPVDPPIMPGWHGVDVPGILGAHFAAPILVDNDVNLMA 205 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER--CH 258 L EH G D +D + V+V G GAGII++G + G G G++GH+ V P GE C Sbjct: 206 LGEHAMGF-PDVDDLLFVKVATGIGAGIIADGELRRGAQGAAGDLGHMAV-PGGEPRLCT 263 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYV 318 CGN GC+E +A+ AI ++ +D T + GD A+ + Sbjct: 264 CGNTGCVEALASGNAIATKLREA---------GIDATTSDDVVALVRAGDPTATATLRQA 314 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 GR LG +A ++L NP +VI G ++ A + LL I + ++L +L +V + Sbjct: 315 GRELGAVLAGTVSLLNPSVVVIGGSLSAAGEQLLAGIREVVYARSLPLATQHLQIVGTRT 374 Query: 379 DHRSA-IGAFALVKRAMLNGILLQHL 403 ++A +GA L L+ + L Sbjct: 375 ARQAAVLGASVLASDFALSTARIDAL 400 >UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E0R0_DICTD Length = 396 Score = 296 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 83/413 (20%), Positives = 175/413 (42%), Gaps = 41/413 (9%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + G +++N + + ISR +IA++ L+ ++VT++ LI+ G+I E Sbjct: 5 RTGRGGRASQQREVNKTIILNAFLRCRNISRTEIAKRFNLSKSTVTRLVNNLIDEGMIIE 64 Query: 65 VDQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 ++ + GR+AI + +A+ +++G ++ D + + + + P+ Q Sbjct: 65 IEPSSEKKIGRKAIVLGLNPEYRNALAIKVGVTYTYLSKIDFAMNIKEIKSFLTPKNPQD 124 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 L+ L Q + + L + A+ + +PG+VD + P++ +N L + + Sbjct: 125 FLDE--LEKATQML--FPEGLEKTHAVGIGIPGIVDNTFKNVVVAPNLNWKNLPLGDMIA 180 Query: 184 ERFK------VTCFVGHDIRSLALAEHYFGASQDCEDS--ILVRVHRGTGAGIISNGRIF 235 ER + + + ++ +AE G + D + V V G G G+I +G+++ Sbjct: 181 ERMRRAFSVEIPVKMDNEANMAVVAEGMLGTKIEYNDLNIVYVYVGEGIGTGLILDGKLY 240 Query: 236 IGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAA-IEQRVLNLLKQGYQSRVPLDD 294 GR GE GH+ + G +C CGN GC E A+ I ++ L++ Sbjct: 241 RGRYNTAGEFGHMTIMKDGIKCKCGNLGCWERYASLGGDIAEKAGFDLEK---------- 290 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-----ADK 349 + A D A ++ L + IN NP I++ G + + + Sbjct: 291 -------ETAEIADEKA---LKKYVDELTVGLINIINGLNPDVIILGGPLIKKDTKDVWE 340 Query: 350 VLLPAIESCINTQALKAFRTNLPVV-RSELDHRS-AIGAFALVKRAMLNGILL 400 + ++ + +++ + + + S LD+ + +GA + G +L Sbjct: 341 FIRQEVKKIVEEKSITSDAGKVRIELTSFLDYPAELVGAGIWAFWDIFEGPVL 393 >UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC4091 Length = 384 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 183/375 (48%), Gaps = 14/375 (3%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ + I + ISRI +A+ Q P +V I +L+++ I+EV+ +ASTGGR Sbjct: 1 MRKEKEERILECIREQEKISRISLAKLLQWNPTTVGSIVAELLKKSYIQEVEMEASTGGR 60 Query: 75 RAISIVTETR-NFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 +A + + + +G+ I + + K+ E L + + + Sbjct: 61 KATLLSLKEDMSPSILGISFAPSFLQIGIGSIQGKIFETEKIVLT----PLIIEKIWQFL 116 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 Q ID K +E+ ISVI+ GLV+ + G + PH Q N + + LEER++ FV Sbjct: 117 FQIIDKKLNKWKEIRQISVIISGLVNSEKGVSIFSPHYQWRNIEIKKILEERYQKKVFVE 176 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D+R++AL E FG+ + + +++ + G G+ I + +++IG GE+GH+QV Sbjct: 177 NDVRAMALLEKSFGSCKKKRNFVVLNIGDGVGSSIFIDNKLYIGSYSGSGELGHMQVNAK 236 Query: 254 G-ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL-----DDCTIKTICKAANKG 307 G RC CG GCLE+ +N +I ++ + +K G S + + +I+ A + Sbjct: 237 GLRRCSCGKIGCLESEVSNLSILDKISSQIKLGQYSILRQKLKRDGNLSIEDFLFALGEK 296 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D LA ++ E + + + I+L NP+++++ G I +++ + ++ Q++ Sbjct: 297 DLLALQIAEESVEMITRALDAIISLLNPERVILYGSIFQSEYLYREILKKI---QSILIS 353 Query: 368 RTNLPVVRSELDHRS 382 + S + Sbjct: 354 EQGYKISLSNFYKEA 368 >UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DT25_9BACL Length = 389 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 161/396 (40%), Gaps = 19/396 (4%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + LV++LN + + ++ +SR + Q L+ ++++I +L+ G I+E+ Sbjct: 1 MPMKASPPLVRRLNERRIMNALREHKRLSRADLERQLNLSAPTISRIVEKLLRDGWIREL 60 Query: 66 DQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 S T GR+ I + A+GV LGR I ++ +++ A Sbjct: 61 YPGESQTAGRKPILLDINPEGSGALGVELGRGCTRIVYTNMLAELRASRTISRSATGPND 120 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ--VENWGLVEAL 182 L + F+ LI + V PG P+ + P + + L Sbjct: 121 ----LAEMVKSFLVEESLTEERLIGLGVAAPGACFPNRDMVVPAPDLGTEWSKSEAAQQL 176 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E V + +D + LAE +FG +Q + V G GAG+ G I+ G Sbjct: 177 ERELGVPVHLANDANAAVLAETWFGTAQHAQHVAFVLADVGLGAGLAVAGSIYEGAARKA 236 Query: 243 GEIGHIQVEPLGE-RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GE H V + RC G+ GC+E+ A+ AI R+ + + TI+ + Sbjct: 237 GEFSHTIVNFESDVRCDDGHAGCVESQASGKAIFARLKAVREVHAHE-------TIEYVV 289 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 K A G + VI+ R+L IA + F+P+ +V+ G + A ++ + ++ Sbjct: 290 KRACSGVEPDASVIDRAFRYLAAGIANLVRAFDPEVVVLGGRMVLASQIAYERLRGYVHD 349 Query: 362 QALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLN 396 + + + A+GA +LV + + + Sbjct: 350 CLRPEHKL---ITCARFGLDAVAMGAASLVLQTVYD 382 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 162/366 (44%), Gaps = 9/366 (2%) Query: 36 IQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRN-FHAIGVRLG 94 +++ + + VT I L++ G + E STGGRRA++ + + V + Sbjct: 5 TDLSKLTHKSLPLVTGIVNDLVQDGYVVEHGLAPSTGGRRALTFLLNKEKQKFIVAVSVD 64 Query: 95 RHDATITLFDLSSKVLAE-EHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVI 153 + T+ ++D+ + + E L +QT ++ I +I +++ I + Sbjct: 65 QLITTVVIYDMLNNIQVEPAKIYLNLADEQTSMALFISFITGYIAKSGISEEQILGIGIG 124 Query: 154 LPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCE 213 +PG+++ G H I+ E L L + K ++ +D +ALAE FG ++ + Sbjct: 125 MPGVINAKLGVNHTFFKIKNEG-NLKNYLSDALKFPVYIDNDSSLIALAELKFGEGRNMK 183 Query: 214 DSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAA 273 D ++V + G G G+I NG IF G +G GE HI + + C CG GCLE + Sbjct: 184 DVMVVNIGWGIGLGMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVDTSLLV 243 Query: 274 IEQRVLNLLKQGYQSR-----VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAI 328 + +R + G SR + + AA GD LA ++ +GK ++ Sbjct: 244 LVERAKAEIAAGISSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIGKGLST 303 Query: 329 AINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAF 387 I++ NP+ IV+ G A K+ + I+ IN + + + S RS +GA Sbjct: 304 LIHILNPELIVLGGRGATAGKIFMAPIQHAINEFCIPRLADHTKISVSASAERSELLGAA 363 Query: 388 ALVKRA 393 LV Sbjct: 364 ILVVEN 369 >UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3C7_9BACT Length = 322 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 155/305 (50%), Gaps = 3/305 (0%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ-QTLEHALLNAIAQFIDSYQRKLR 145 + IGV LG + + +L + + Q + H + IA I + + + Sbjct: 7 YIIGVDLGGTNLKAGIVGRDGNILYQFSIKTNAHAESQVISHQICELIAGIIKNVRIEKS 66 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 +++ I + PGL+D I + P++ + + + + + + F + C + +D + A E Sbjct: 67 DILGIGLGSPGLIDKKGETILFSPNLSKWRDIPIKKIISDTFGLPCILENDANAAAWGEK 126 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + GA +D +++ + G G GII + +++ G N GEIGH+ ++ G C+CGN+GC Sbjct: 127 WVGAGKDVSSLVMLTLGTGIGGGIILDNKLWRGINNTAGEIGHMSIQTDGPLCNCGNYGC 186 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLD-DCTIKTICKAANKGDSLASEVIEYVGRHLG 323 +E A+ + +R LL+ G S + D + T K I +AA +GD + +IE GR+LG Sbjct: 187 IEVYASAPGMVRRFRELLESGKASLLKKDEEITAKRINEAAVQGDGASLSIIEETGRYLG 246 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA 383 I I++ NP +V++G + + ++L+ ++ I + LKA + ++ S+L + Sbjct: 247 IAIVNIIHILNPGAVVLSGGLIGSGELLMRPVKRTIEERVLKASYKDTKILFSQLGTDAG 306 Query: 384 IGAFA 388 I A Sbjct: 307 IIGAA 311 >UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=A5IKW0_THEP1 Length = 379 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 186/393 (47%), Gaps = 27/393 (6%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ-- 68 N +K LN ++ ++I + PISR I+E + L P+SVT++T++LI+ G I+E+ Sbjct: 4 NSPRIKILNKKSILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIGTMGK 63 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S G RR I + F ++ +G + T + +V + P + Sbjct: 64 NSPGRRRRILLDLRKNAFLSLVFDIGVNITTYGVGFFDGEVEPRGTFNTPREPVE----- 118 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 N + + + + + IS+ +PG+VD + KI P+++ EN + E L+ V Sbjct: 119 FFNIVKEIYERISGE-YRISRISLSVPGMVDMEEKKILLAPNLEWENVSIKELLK--VDV 175 Query: 189 TCFVGHDIRSLALAEHYFGAS-QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 ++ LAE Y ++ ++++ + + G GAG++ +G+IF G + GE GH Sbjct: 176 PVLADNEANLSMLAEKYHSEDLRNVKEAVFIIIREGVGAGLMIDGKIFRGPSFTAGEAGH 235 Query: 248 IQVE-PLGERCHCGNFGCLETIAA-NAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 + V +CHC N+GC E +++ N AIEQ L + + +A Sbjct: 236 MTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELPGKNAIEK-----------FQALK 284 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 + + A ++ ++ I +N+ NP+ +++ GE+ + L ++ ++ +ALK Sbjct: 285 QRN-DAKRILMKFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFLDIVKDFVHQRALK 343 Query: 366 AFRTNLPVVRSELDHRSA--IGAFALVKRAMLN 396 A +L + +E + S+ +GA L ++ Sbjct: 344 AAVKDLKIRTTEFRNISSNLVGAAVLAVEDIIE 376 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 294 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 183/386 (47%), Gaps = 13/386 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 + I G + ++++ L+ +VTK ++ + G I + + ++GGR Sbjct: 20 KRIITHYIY-NGSSTIPDLSKELDLSVPTVTKFIGEMCDDGYINDYGKLETSGGRHPNLY 78 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE--HALLNAIAQFI 137 + + +GV + R I L + ++ E +P + + ++E + L I FI Sbjct: 79 GLNPESGYFLGVDIKRFAVNIGLINFKGDMV-ELKMNIPYKFENSIEGMNELCKHILNFI 137 Query: 138 DSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIR 197 +++ I+V + G V+P+SG + E L + L E+ + +D R Sbjct: 138 KKLTINKEKILNINVNVSGRVNPESG--YSFSQFNFEERPLADVLSEKLGYKVTIDNDTR 195 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 ++ E+ G + +D I V V G G GII +G+I+ G++G GE GH+ C Sbjct: 196 AMTYGEYMQGCVKGEKDIIFVNVSWGVGIGIIIDGKIYTGKSGFSGEFGHMSAYDNEIIC 255 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL------DDCTIKTICKAANKGDSLA 311 HCG GCLET A+ +A+ + +L ++ G S + + T+ I A NK D L Sbjct: 256 HCGKKGCLETEASGSALHRILLERIQSGESSILSTRIATEENPITLDEIIAAVNKEDLLC 315 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 E++E +G+ LGK IA IN+FNP+ ++I G ++ + I++ + +L + Sbjct: 316 IEIVEEIGQKLGKQIAGLINIFNPELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKDS 375 Query: 372 PVVRSELDHRSAI-GAFALVKRAMLN 396 ++ S+L ++ I GA L + M Sbjct: 376 AIITSKLKDKAGIVGACMLARSRMFE 401 >UniRef50_A5N1R7 Predicted transcriptional regulator n=2 Tax=Clostridium kluyveri RepID=A5N1R7_CLOK5 Length = 402 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 173/391 (44%), Gaps = 14/391 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 ++ L+ + G +S+ +I+ ++ + ++ + L + +I E STGGRR I Sbjct: 15 EKKIFNLLQKNGRLSKNKISSRTDIKLTTLNYVMEPLEKSKMIVESCIGESTGGRRPILY 74 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFID 138 +F+ IG+ + + + +L ++L +E + + + T ++ I + Sbjct: 75 DININDFYIIGIDISILYTQVVITNLKMEILYKELFNMDDSYTPCETVKKVVEIINRAYA 134 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHI---QVENWGLVEALEERFKVTCFVGHD 195 + +L+ I V G +D +G I + + + + LEE+ K V + Sbjct: 135 NLNLSHMKLLGIGVGSVGPLDIKNGIIKNPVDFFADKWTDVPIKKMLEEKLKHPVIVENG 194 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 + +AE+++G + E+ G G IS+G + N GH+ ++ GE Sbjct: 195 ANAAVVAEYFYGVGRGIENIAFFNCGIGIRTGTISSGHLIRTINDEEEAFGHMTIDIDGE 254 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV--PLDDCTIKTICKAANKGDSLASE 313 +C CGN+GCLE + AI + + +K+G + + P+++ K +C AA GD L+ + Sbjct: 255 KCKCGNYGCLECYSTIKAIIKNISKKIKKGRHTIINKPVEEIDYKDVCLAAEMGDELSID 314 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA-IESCINTQALKAFRTNLP 372 +I LG ++ I L +P+ +++ G + K+ ++S + Sbjct: 315 IITDAALILGSGLSNYIKLLSPKLVILTGPLIINSKLFYEVCVKSTLKNL---NSTKGKS 371 Query: 373 VVRSELDHRSA----IGAFALVKRAMLNGIL 399 V+ + + S IGA A+V L + Sbjct: 372 VIFNRCGYFSGDAISIGASAMVIERCLESGI 402 >UniRef50_A8F699 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F699_THELT Length = 375 Score = 293 bits (751), Expect = 7e-78, Method: Composition-based stats. Identities = 91/386 (23%), Positives = 180/386 (46%), Gaps = 18/386 (4%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 ++++ + + R++ + G ISR +++ Q+ L+ +V++I LI G+I+EV + S+ Sbjct: 1 MIQKNSEREILRILRRSGHISRSKLSLQTGLSKPAVSEIVSGLISLGVIREVKKGKSSSK 60 Query: 74 R--RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 R I + + + I + +G + L DL S+V+ T++ LLN Sbjct: 61 GGKRPILLEFKPDYRYIIAIDVGGTKLRVALTDLESRVIETRVVSSKGVTRK---DDLLN 117 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 I + I + + +++ I + +PG VD +G ++YMP + N L +++ + Sbjct: 118 LICKNISPFLEEREKILGIGIGVPGTVDMKNGFVYYMPAFNLRNIELKSMVQKEVDLPTL 177 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V +D+ AL E + GA++ ++ +L+ + GTGAGII + + G G GEIG++ + Sbjct: 178 VANDVNLNALGEMWKGAARGHKNVLLISLGTGTGAGIILDRHMCNGSRGMAGEIGYMITD 237 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 E+ + FG LE + A+E+++ + ++ ++K + L Sbjct: 238 WSREKYNDFPFGNLEKWFSGYALEKKLKEI----------GENMSLKDFFGRTASSEDL- 286 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEI-TEADKVLLPAIESCINTQALKAFRTN 370 + ++ HL + AI L +P+ +VI G I ++ I + Sbjct: 287 NNILNEACEHLALAMVNAICLLDPEVVVITGGIGFNQYDKIIEKIMPVFEKTVPAEIFQS 346 Query: 371 LPVVRSELDHRSAI-GAFALVKRAML 395 + +SEL I GA LV++ Sbjct: 347 ISFKKSELGDMGVIVGANYLVQKEFF 372 >UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepID=A4WVU3_RHOS5 Length = 425 Score = 293 bits (751), Expect = 8e-78, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 6/360 (1%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR---RA 76 V+ + G +R+Q+A ++PASVT I +LIE GL++EV + Sbjct: 32 RQQVFERVRAAGLTARVQVARDLGVSPASVTTIVSELIEAGLVEEVATRRGGESGRGRPV 91 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHALLNAIA 134 +++ +G+++ D + + D + ++LAE H +L L + Sbjct: 92 VALGVRGAAHRVVGLKISDRDLSAVVMDFAGRLLAEHHEERRPVALAPASLLAVLETLLD 151 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 + +EL A+ + LPG VD G++ + + + L ER + V + Sbjct: 152 RVTAKAGLARQELAAVGIGLPGYVDSTGGRVLWSSILAERDVPLGRLATERLGLPVQVDN 211 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 D A+AE +FGA + D ++V + G G G+++N RIF G G E+GH +V+ G Sbjct: 212 DANLCAMAELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIFRGARGIGMELGHTKVQLDG 271 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CG GCLE A+ A+ + L ++ + ++++ A G+ A + Sbjct: 272 ALCRCGQRGCLEAYVADYALAREATTALNWTHRESQSM-AILLESLHDHAKAGNQAARSI 330 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 GR+L +A +NL +P I++AG D + + +N L R + Sbjct: 331 FRRAGRYLAVGLANIVNLVDPPLIILAGARLRFDYLYAEDTLAEMNALVLATGRPLPEIE 390 >UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDS2_CLOTS Length = 311 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 140/309 (45%), Gaps = 7/309 (2%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLREL 147 IGV +G + + L D + K++A P P+R + + + I + ++ Sbjct: 3 IGVDVGGTNIAVGLVDENGKIIATGSRPAEPKRGYAAIAKDIAEISLELIKRCGLDISDV 62 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 ++ + +PG+ D + G + ++ LV+ + + + + +D ALAE FG Sbjct: 63 ESMGIGVPGVADNEKGIVLRAVNLYWTKVPLVKEIHKYIDIPINMDNDANVAALAEGIFG 122 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A + S+ + + G G+G I NG++F G + E+GHI + G C+CG GC ET Sbjct: 123 AGKGTNSSVTITLGTGVGSGFILNGKVFNGAHHFAPELGHIVLGDNGVMCNCGKIGCFET 182 Query: 268 IAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVIEYVGRH 321 A+ A+ + + + S + ++ T K + AA + D A + ++ Sbjct: 183 YASATALIREGKKAVMKDSNSLILKLAGGEIESITAKNVIDAAKQFDEAAMMIFNDYVKY 242 Query: 322 LGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHR 381 L I IN+ +P+ I+I G + A LL ++ ++ L + ++EL + Sbjct: 243 LAMGIVNIINILDPEVIIIGGGVANAGDFLLKPLKEEVSKNILFKDLPYADIKKAELGND 302 Query: 382 SAIGAFALV 390 + I +++ Sbjct: 303 AGIIGASIL 311 >UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C9NFC9_9ACTO Length = 418 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 153/378 (40%), Gaps = 23/378 (6%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPI---SRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + D V++ N + V R + G +R ++ + L A+V+ + QL++ G + Sbjct: 9 GSKADKDTVRRHNLSLVLRAVRDEGEAGEATRAGVSARVGLTRAAVSSLVEQLLDSGFVT 68 Query: 64 EVDQQAST-GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSS--KVLAEEHYPLPER 120 E + S GR ++ +GV + ++ + DL+ +V EH Sbjct: 69 ESGKTFSGQAGRPGTALKVARTGPAGLGVEINIDYVSVCVVDLAGTGRVRQTEHLDNRGA 128 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + A+ +DS + + + ++ LPGLV G + P++ + Sbjct: 129 PPGEVLARAAGIAARTLDSAREQDLCPVGTALALPGLV--SGGSVRQAPNLGWNQVAAED 186 Query: 181 ALEERFK--------VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNG 232 E + ++ ALAE +FG + + G G ++ +G Sbjct: 187 LFGEALAGLRPGTAALPVRSENEANLAALAELWFGGLGTVRSFLYLTGEIGVGGALVLDG 246 Query: 233 RIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL 292 + G +G GEIGH+ V+P G C CG+ GCLE A +A+ + G + V Sbjct: 247 ELLRGAHGFAGEIGHVVVDPAGPECRCGSRGCLEQYAGQSALLRAAGIGEGAGGAAGVM- 305 Query: 293 DDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLL 352 + + A GD +A + GR LG+ ++ A+NLF+P +V+ G L Sbjct: 306 ------ELERRAQAGDPVALAAVADAGRMLGQVLSGAVNLFDPDAVVLGGIYRGLMPWLA 359 Query: 353 PAIESCINTQALKAFRTN 370 P + + + + + Sbjct: 360 PPADEELTGRVVSGLWSR 377 >UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178996E Length = 317 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 138/315 (43%), Gaps = 12/315 (3%) Query: 82 ETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSY 140 + +GV LG LFD ++L E RT + + + N I + Sbjct: 6 NKQQEFVVGVDLGGTKIAAALFDSEGQLLNREQMETAGARTAEEVVARITNMIRSVSGGH 65 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSL 199 L + + PG V+ G + + ++ N L +E V +D + Sbjct: 66 P-----LRGVGMASPGTVNSREGIVIHGTNLPEWTNVPLKAWMERDLNTEVQVLNDANAA 120 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 A E+ GA + + + V + G G+GI+ +G++F+G N GE+GH ++P G +C+C Sbjct: 121 AWGEYVRGAGRGSTNMVYVTLSTGIGSGIVLDGKLFLGSNSFAGELGHHIIDPSGPQCNC 180 Query: 260 GNFGCLETIAANAAI----EQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 G+ GC E A+ AI QR+L + + + +A D +A EVI Sbjct: 181 GSHGCWEVFASGTAIGLAASQRMLTQTSVISELAAADGGVNARHVFEAKRLHDPVAVEVI 240 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 + ++ + I+ FNP +IV+ G ++ A ++L P + + + ++ +V Sbjct: 241 DRAVYYMALGLVNVIHSFNPDRIVVGGGVSRAGELLFPQLREMTDKLVMPSYLGTYEIVP 300 Query: 376 SEL-DHRSAIGAFAL 389 + L D +GA AL Sbjct: 301 AGLRDDVGLVGAAAL 315 >UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJQ5_CATAD Length = 390 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 108/383 (28%), Positives = 179/383 (46%), Gaps = 10/383 (2%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS--TGGR 74 + AV L+ + GP+SR QIAE +L+PA++T+ TR+L+ GL+ E + S GGR Sbjct: 11 DMTRTAVLALLARRGPLSRAQIAEMLELSPATITQGTRRLLAEGLLVEEAPRPSAGGGGR 70 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 ++ + + H IG+++ T L + V+ + + +E L I Sbjct: 71 PSVPLSLVPGSAHTIGIQVAHEHVTGVTSRLDATVVHSFRHAFDPASPDAVE-TLTALIR 129 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 I+ +R+ L + V +PG+V+P++G + + L L E V FV + Sbjct: 130 SEIEEIERRGLPLAGVGVAVPGIVEPETGTLSMSVRLGWTGLPLAARLREALGVPVFVDN 189 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 DI ++ AE +G D D +L + +G G G++ +G + G G GE GH+ V+P G Sbjct: 190 DISAVTAAERLYGPGADEADFLLAAIGQGIGLGMVLDGAPYRGAAGAAGEFGHMPVQPDG 249 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 +C CGN GCLE++ + A+ + +S + + AA GD A ++ Sbjct: 250 PQCVCGNRGCLESLVSTEALLRTAHEAGILPAES-------DLDDLGTAARHGDPAAVQL 302 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 + LG+ +A +NL P+ ++I GEIT +L + + L A R V Sbjct: 303 LHNAATLLGRALAGVVNLLGPRSVIIIGEITAIWDLLDDPLHEALLDHLLPAVRDTRIEV 362 Query: 375 RSELDHRSAIGAFALVKRAMLNG 397 R D A A +V A L Sbjct: 363 RPWHDEVIAASAARVVLAAPLAA 385 >UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1T2_ERYRH Length = 392 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 83/352 (23%), Positives = 159/352 (45%), Gaps = 15/352 (4%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA--STGG 73 K +A + L+ GP+SRI I++ + PA+V+ +T+ LI +I E+ + + G Sbjct: 7 KTKQTALILDLLYSKGPLSRIDISKSLHITPATVSDLTQHLINDKIICEIGEDTDNTRVG 66 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 RR I + + + +GV L H T+ L D +++ EE + L ++ L+ I Sbjct: 67 RRKILLGLLPNHSYYLGVELFEHSFTLALSDNLNEICFEEAFTL-SKSDHVRHDLLVKTI 125 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 F+ + + +I + +PG D S I + N+ L + L++ K + Sbjct: 126 NDFLKKHSDTA--VTSIGIAIPGHYDKTSAHIL-TNNHSWANFSL-DYLKKHLKYPVYFE 181 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +++ ++A+ E FG + + + + RG + G ++ N VGEIGH+ V P Sbjct: 182 NNVNAMAIRERLFGHDKTDANFLFLHFRRGIFCSYVYQGDLYARNNYFVGEIGHLVVNPF 241 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL-----DDCTIKTICKAANKGD 308 GE+C CG GCL+T A+ + + L + + + ++ + +A + GD Sbjct: 242 GEQCECGKIGCLQTYASQTWLLHKASLLFNSSANTYLKQLVNEEHELSMDILLQAYHLGD 301 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT---EADKVLLPAIES 357 S +++E L + I + I + G++ + +LL I Sbjct: 302 SAVIQLLENAINFLAIALNNIIVTLDTDIIYLHGQLFDDEQLSTLLLNKIRE 353 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 3/307 (0%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLREL 147 +G+ LG L D++ K+L + P + + N L EL Sbjct: 4 LGIDLGGTSIKAGLVDINGKILKKGQVPTGAGEGTTAVLKRIKNLARDLAGEQGLALGEL 63 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 I + +PG VD G +H P++ ++ L + L + + +D AL E + G Sbjct: 64 EGIGIGIPGSVDVARGLVHLAPNLFWRDFSLRDELAALLDLPVAIENDAHVAALGEMWQG 123 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A + ++V + G G+G+I +GR+ G G E+GHI++ G +CHCG GCLET Sbjct: 124 AGRGYTSLLMVTIGTGIGSGLIIDGRVHHGLFGYGAEMGHIKMVCDGRQCHCGGHGCLET 183 Query: 268 IAANAAIEQRVLNLLKQGYQSRVPLD-DCTIKTICKAANKGDSLASEVIEYVGRHLGKTI 326 +A+ A+ + L GY S + + K I AA GD LA VI+ +LG + Sbjct: 184 LASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAACYLGTAL 243 Query: 327 AIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA-IG 385 A A+ L P+ I+I G +A +V+L I + +PV+++ L + + IG Sbjct: 244 ANAVLLVGPEAIIIGGGPAQAGEVILDPIRKHLAAAMGTWQLKQVPVLQAALGNDAGIIG 303 Query: 386 AFALVKR 392 A L + Sbjct: 304 AAYLAMK 310 >UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (NagC/XylR) family n=1 Tax=Vibrio splendidus 12B01 RepID=A3UNW3_VIBSP Length = 405 Score = 291 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 181/398 (45%), Gaps = 22/398 (5%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++D V+ N + + G SR +I++ L A+VT+ + LIE+GLI E + + Sbjct: 8 SLDDVQNHNKRVILNALHNSGSCSRKEISQLVGLDQATVTRAIKPLIEQGLIVETGVRKA 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHAL 129 GR +I + T++ + VR+ R + +I +DL+ L P+ + + + L L Sbjct: 68 ARGRSSIYLGFNTQHLRIVSVRIQRTNFSIDTYDLNGVSLTNVVKPINTDNSPEELIEYL 127 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGL-VDPDSGKIHYMPHIQVENWGLVEALEERF-K 187 ++ + + +++ I+V +PG ++ D+ + ++ + + E+F Sbjct: 128 TKQVSDVLKEQEC---DVLGIAVAMPGPFLEQDNKIMLMTDAKNWQDIDFISHMREQFPD 184 Query: 188 VTCFVGHDIRSLALAEHY-FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + GHD + ALA ++ + + V + +G G+G++ G+++ G G GEIG Sbjct: 185 YPIYAGHDAKLAALAVWRQLQSTYEASVLLYVSLGQGVGSGLVIEGQVYHGSLGTAGEIG 244 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H + G +C CGN GCLE ++ A+ +R Y+ L + + A + Sbjct: 245 HTSINFQGPQCKCGNLGCLELYSSTTALVER--------YKQEASLVSADFEMVVNAFHD 296 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 +S A ++Y+ + L + IN NP +VI E+T+ L ++ L Sbjct: 297 RESAAINAVDYLAKCLAHGLVNNINQLNPDLVVIGDELTQLGADFLSRVKEYTYRLLLPD 356 Query: 367 FRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLL 404 +N+ +V E D LV + + ++ LL Sbjct: 357 LASNIELVLDESDED-------LVHKGNYHNVMSNELL 387 >UniRef50_B0NGA7 Putative uncharacterized protein n=3 Tax=Clostridium RepID=B0NGA7_EUBSP Length = 390 Score = 291 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 80/407 (19%), Positives = 161/407 (39%), Gaps = 35/407 (8%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + + VK+LN V+R ++ S +I+ ++ +V KI +L E LI+EV Sbjct: 1 MKRSTSNQEVKKLNRNRVFRYVNSREETSMPEISAALSISGPTVLKIVNELKEEKLIREV 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 + STGGR+A +I +AIG+ + ++ I DLS K L E P + QT Sbjct: 61 GEFESTGGRKAKAIAAVRDVKYAIGLDITKNHVGIVYTDLSGKALKHERVRKPFKYTQTY 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 H + + +F++ + + ++ + + +P ++D I + + + E L Sbjct: 121 LHEVAAIVRRFVEESRIPKKRILGMGISVPAIIDVQRDYITNSHALGIYDVP-CEELTAC 179 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGR------------ 233 C + +D + A+ E S+ C + + + + G II Sbjct: 180 MPYPCELLNDANAAAITES--NRSRTCSNLVYLFLSNTVGGAIIFGNETGIVRTAQEKDR 237 Query: 234 ----IFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR 289 ++ G N GE GH+ + P G+RC+CG GCL+ + + + Sbjct: 238 GSVYMYKGNNWRSGEFGHMVIHPEGKRCYCGKIGCLDAYCSALRLADQ------------ 285 Query: 290 VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 D ++ + G+ ++ + L + F+ + IV+ G + + + Sbjct: 286 ---TDGDLERFFREMEAGNQDLKKIWNEYLKDLAIAVDNLRMCFDCE-IVLGGYVGSSME 341 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLN 396 + + + + + + V SA+GA ++ Sbjct: 342 PYIQEFRNLVAEKDIFENSGDYVYVCQYQQEASALGAAIFQIEKFID 388 >UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57B53 Length = 381 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 159/379 (41%), Gaps = 17/379 (4%) Query: 22 AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVT 81 + L+ SR+ +A L ++V+ T+ L+ G++ E + S GGRR + Sbjct: 8 RLLWLVAHGHATSRMDLARALGLPQSTVSVRTQALMSAGVLSESGEGRSAGGRRPKLLTV 67 Query: 82 ETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSY 140 H +G I D++ ++L PL + + L L A+ + Sbjct: 68 NAEFGHVWAADVGSRHVRIGALDIAGRLLEVHERPLDISQEPRELVAGLAAAVRDVMAGA 127 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSL 199 + + V PG VD D+G I + + + AL E F++ V +D L Sbjct: 128 D-CPGRALGLGVAFPGPVDVDAGTITLPSRMPGWRGFAVRAALAEHFELPVVVDNDANML 186 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE-PLGERCH 258 AL E GA ++V+ G G+GI+ G ++ GR G G+I H++V + C Sbjct: 187 ALGESVAGA--PGRTLLVVKAGTGIGSGIVLGGELYRGRAGVAGDISHVRVPAAEDQPCT 244 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYV 318 CGN GCLE +A+ AA+ ++ L T + A G A+ + Sbjct: 245 CGNRGCLEVVASGAALVGQLQAQ---------GLKLETTAQVMATAEDGHPEATTAVRRA 295 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 G LG+ +A +N NP ++++ G ++ + + A+ + + L L + R Sbjct: 296 GLRLGEVLATVVNFSNPDEVLLGGALS-GSEAFVAAVRGALYERCLPLATRELRIDRVRF 354 Query: 379 DHRSAI-GAFALVKRAMLN 396 + + GA AL A+ Sbjct: 355 GADAGLYGAGALALDAVFE 373 >UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGH9_NAKMY Length = 386 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 98/394 (24%), Positives = 182/394 (46%), Gaps = 16/394 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + + + + + AA+ RL+ +GP SR +A + +L+PAS+T+I R L + GL+ E + Sbjct: 4 RTESFPALSEGSRAALVRLLV-HGPASRADLARRLRLSPASLTRIVRTLEDSGLVVESET 62 Query: 68 QAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 GR + ++ H +G++L + + D+ S VL PL Sbjct: 63 TVPQRMGRPSQAMEVNVDAVHLVGIKLLAGEINLVRTDMRSTVLGHRTIPLQTVPLDPAI 122 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + AI + + A+ + L G VDP S + + P + E+ L + ER Sbjct: 123 DRITEAI---LAEVAVDPA-VGAVGISLAGPVDPSSDMVTHSPFLGWEDVPLARLVSERT 178 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + + +D+R+L AEH+FGA+ D +LV + G G G++ R+ G G G+IG Sbjct: 179 GLPTVIENDVRALTAAEHWFGAAAGATDFVLVTIGAGIGCGVVIGDRLVDGNTGGAGQIG 238 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ + P G C G+ GC + A++A+ + L + D T + A++ Sbjct: 239 HLPITPSGPLCERGHRGCARSYLASSAMVGQASMALHRP--------DLTYAELVSLAHQ 290 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 G+ +AS V+ G LG I + + P K++I+GE +++ ++ ++ Sbjct: 291 GERVASRVVRDAGYALGTLIGLVTAITAPSKVIISGEGVTMVPLVMDVVQER-ASEVEHW 349 Query: 367 FRTNLPVVRSELDH-RSAIGAFALVKRAMLNGIL 399 ++P+ +E A GA + + +L + Sbjct: 350 AVPDVPIEIAEFGFVEWARGAAVIALQQLLEAAI 383 >UniRef50_D1W4V6 ROK family protein n=2 Tax=Prevotella RepID=D1W4V6_9BACT Length = 400 Score = 290 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 170/381 (44%), Gaps = 9/381 (2%) Query: 19 NSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS 78 N + + + + + +I++ ++ + TKI L+ +G + ++ T GR Sbjct: 16 NYKTILKYLMLHDGCTIPEISKHIGISVPTTTKIITNLMSKGFVVSKGKRDQTHGRLPTV 75 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE-HYPLPERTQQTLEHALLNAIAQFI 137 T + + +G+ + L D S ++ E+ P Q LL+ + ++I Sbjct: 76 YGLSTDSGYFLGIDPSYDSLAMALCDFSGNIVFEKNKIPFQLENTQQCLDTLLDLVNEYI 135 Query: 138 DSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIR 197 S + ++ S+ + G V+P +G + N L + + ++ + + +D R Sbjct: 136 GSLDIQKESILHASMNVSGRVNPFTGVSYS--IFDFLNQPLAKYISDQIGIPTCIENDTR 193 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 ++ E+ G + ++ + V G GII G+I+ G++G GE GH++ C Sbjct: 194 AMTFGEYLVGCCKSAKNVLFVNASWGIAIGIIVGGKIYYGKSGFSGEFGHVKAYDNEVLC 253 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL------DDCTIKTICKAANKGDSLA 311 CG GCLET + A+ + + + +G +S + + T+ + A K D+L Sbjct: 254 RCGKKGCLETEVSGMALLRETVKNVLKGKRSILSDKVLKENKELTLSDVLYAIQKEDTLC 313 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 E ++ + LG+ +A IN+FNP ++I G++++ + ++ I +L + Sbjct: 314 IETLQKIADQLGRNLAGMINIFNPDMLIIGGDLSQTGDYITQPVQMAIKKYSLNIVNEDS 373 Query: 372 PVVRSELDHRSAIGAFALVKR 392 VV S L R+ + +V R Sbjct: 374 EVVTSTLRERAGVVGACMVAR 394 >UniRef50_D1NYQ4 Protein mlc n=3 Tax=Providencia RepID=D1NYQ4_9ENTR Length = 403 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 119/401 (29%), Positives = 217/401 (54%), Gaps = 5/401 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q G++D +KQLN+ VYR+I Q+GPISRI +++QSQLAPAS+TKITR+L++ LI+E + Sbjct: 4 QTGHIDQIKQLNTGIVYRVIAQHGPISRIALSKQSQLAPASITKITRELMDAHLIQEREF 63 Query: 68 QA-STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 GR AI +VTE+ + + +R+ + T++L ++SSK LAE Y + Q Sbjct: 64 PVLGLRGRPAIGLVTESEGWQFLAIRIENNQLTLSLKEISSKTLAENSYSFDVKGNQQFC 123 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 L ++ F + + L + AIS++L G++D SG I+ +P+ ++ + L E+ Sbjct: 124 LQLSALMSLFFEQNKNCLERVTAISILLDGILDSSSGVIYRLPNYDLDALPISNYLTEQT 183 Query: 187 KVTCFVGHDIRSLALAEHY-FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + ++ + +LAL ++ + + ++ I +++H +++ + + Sbjct: 184 GLPVYLNPSVNALALMDNLSYSTQRRNKNIIYLQLHDVVNIAVLNQEKSLDSSTRHPILF 243 Query: 246 GHIQVEP-LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GHI VE G C+CG GCLET+ + ++I ++ LL S + + I+ IC+ A Sbjct: 244 GHIPVEILQGLDCYCGGKGCLETLVSVSSILKQARILLADYPASILNQKEINIEAICQGA 303 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 N DSL ++++ V + L +A+ IN+ Q I+I + +D+ + IN Sbjct: 304 NIADSLCLKILDSVAQQLAHPLAMMINILGTQLILINSPLNSSDEYWYTQLHHYINLYVN 363 Query: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 +R+ L + +S + + A++ ++ +G LL LL+ Sbjct: 364 PLYRSKLLIEKSTFSIKES--ETAVIHHSLYDGSLLLKLLQ 402 >UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=Actinobacteria (class) RepID=A9WL96_RENSM Length = 416 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 172/383 (44%), Gaps = 14/383 (3%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 ++++ +R ++AE + LA ++V L GLI + S+GGR + Sbjct: 38 LFQIFRDGQARTRAELAELTGLARSTVAARLDALTALGLIGPAGEAVSSGGRPPSRVAFN 97 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQ 141 V +G + L DL ++L E + + ++ + + Sbjct: 98 PTARIVFAVDVGATHLLVALTDLGGRLLGERKVAADVSDGPEKVLDLVIRQCQELLAESG 157 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLA 200 R +EL I + +PG V+ SGK P + + + + ++ F V +D+ +A Sbjct: 158 RSAKELAGIGIGVPGPVEHSSGKPASPPIMPGWDRFDIPSYIQRVFDTDVLVDNDVNIMA 217 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL-GERCHC 259 L E ++ +D + ++V G G+GIIS G + G +G G++GH++V G C C Sbjct: 218 LGE-RAAHWREAQDLLFIKVATGIGSGIISGGLLQRGADGTAGDLGHVRVARGEGIICRC 276 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 GN GCLE IA+ AI + + S VP ++ + I G+ A +V G Sbjct: 277 GNEGCLEAIASGPAIARALTE-------SGVPANN--GEEILALVRAGNVQAIQVFRQAG 327 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 R +G +A +++ NP +VI G ++ A + LL + + ++L + L +V+S+ Sbjct: 328 RDVGDVLATCVSMLNPAVVVIGGSLSAAGEHLLAGVREVVYARSLPLATSRLSIVQSKAG 387 Query: 380 -HRSAIGAFALVKRAMLNGILLQ 401 +GA +V +L+ + Sbjct: 388 AEAGVLGASRMVTDHVLSASRID 410 >UniRef50_C6JJM8 Transcription regulator n=2 Tax=Fusobacterium RepID=C6JJM8_FUSVA Length = 402 Score = 290 bits (743), Expect = 7e-77, Method: Composition-based stats. Identities = 102/364 (28%), Positives = 177/364 (48%), Gaps = 11/364 (3%) Query: 24 YRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTET 83 I ISR ++A++ + PA + KI +++G+IKE + STGGR+ + + Sbjct: 24 LEFIKNSNGISRAELAKELNITPAGIGKIVNGFLKKGIIKEYGEGISTGGRKPLILKINE 83 Query: 84 RN-FHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQR 142 N +GV L I++ D++ KVL Y L +R Q E+ +L + I Sbjct: 84 ENIGVILGVSLAPRFIQISIGDINGKVLRTIKYSLKKRLAQK-ENNILKTVEVIIKRELN 142 Query: 143 KLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALA 202 K +E+ ISVI+ G+VD ++G + PH +N L E LE++F F+ +D+R +AL Sbjct: 143 KNKEITIISVIMNGMVDSEAGISIFSPHYNWKNIKLKELLEKKFNRRVFIENDVRGMALT 202 Query: 203 EHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL-GERCHCGN 261 E FG+ ++ + +++ + G G I N ++ G GE+GH+ V+ E+C CG Sbjct: 203 EKIFGSCKEKHNFVVLNIGDGVGGSIFLNDSLYKGYGSMSGELGHMVVKRNSSEKCSCGK 262 Query: 262 FGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTICKAANKGDSLASEVIE 316 GCLET +N AI +++++ +K S + ++ I KA + D L ++ Sbjct: 263 RGCLETEVSNIAIIKKIISQIKLNNYSSLKNVLNEKGTLDMEDIIKAVKEKDMLTLNIMN 322 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 I I++ NP+KI++ G I ++ L + + + L N + S Sbjct: 323 EAIYLTAHAIDGIISVINPEKIILFGAIFKSS-FLFKMLVNEVEKVTLNE--QNYEIKVS 379 Query: 377 ELDH 380 E Sbjct: 380 EFSD 383 >UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter RepID=B0K0J6_THEPX Length = 381 Score = 290 bits (743), Expect = 7e-77, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 172/385 (44%), Gaps = 24/385 (6%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G L+K +N A V +I + PISRI++++ +++ ++++ I +LIE GL+ E Sbjct: 7 GTSGLIKNINKANVLDVIKKMQPISRIEVSKVLKMSKSTISAIVDELIEEGLVIENGYGE 66 Query: 70 -STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 T GR+ I + IG+ + ++ L +L K+L + + + + + Sbjct: 67 KGTVGRKPIQLSFNPDARFVIGISVESTNSIGILTNLEGKILKKIKWETGIK--EQAFNG 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 ++ I + + + + I + I D G + P ++ N+ L + L E F Sbjct: 125 IVKGIKELAEEDKNIIGIGIGLPGIT----DIQKGIV-DAPGLKWSNFDLKKRLSEIFNY 179 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 +V + + AL E + G ++ E+ +L+ + G G+GI NG + G + GE+G++ Sbjct: 180 NIYVDNSVNYAALGERWIGCCREIENFVLINIGNGIGSGIYVNGTLLRGNSYAAGEVGYM 239 Query: 249 QVEPL--GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 + ++G E A+ +A+ + V S+ T++ + K K Sbjct: 240 AIGEDAFERVYSYEDYGYFERKASLSALVESV---------SKSLPYVKTMEGVVKEYKK 290 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 + + + ++L IA +++ NP+ I+I G+I + + ++ + Sbjct: 291 QNPACVQAVSQFIKNLSMGIANIVSILNPEVIIIGGDILNYEIDIRQELKEKVKR----I 346 Query: 367 FRTNLPVVRSELDHRS-AIGAFALV 390 + + ++L + AIGA A V Sbjct: 347 VPFDFDIKVAQLGEDASAIGAVADV 371 >UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobacteriaceae RepID=Q11DN8_MESSB Length = 442 Score = 290 bits (743), Expect = 8e-77, Method: Composition-based stats. Identities = 95/407 (23%), Positives = 172/407 (42%), Gaps = 18/407 (4%) Query: 6 QAQIGNV------DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIER 59 Q GNV D +++ N A V + Q SR +IA+ + L+ ++++ I+ LI Sbjct: 16 PVQGGNVTAGIRHDEMRKRNRALVIAAVRQSDQPSRTEIAKLTGLSHSTISTISAGLIAE 75 Query: 60 GLIKEVD----QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY 115 G ++EV+ + GR +++ + L + ++ L D V+ + + Sbjct: 76 GTMREVEQDGDTAPTRRGRPQVALSLNPDAASVACLYLSFNSLSVVLADYRGDVINQRTH 135 Query: 116 PLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVEN 175 L T LL A + R E + IS + G+ D ++ + P + + Sbjct: 136 RLD--TLAMSRQDLLEATIAALQDLTRDRGEFLRISCAVQGITDSAGRELLWSPITPLSH 193 Query: 176 WGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIF 235 + ALE+ F V V +D +A A + + ++ I + + G G G++ NG++F Sbjct: 194 LPVGAALEDAFGVPTTVQNDSNMMAEALRWLNPKRYSDNFIAILLSHGIGMGLMLNGKMF 253 Query: 236 IGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC 295 G + GE GH+ +P G C CG GC+E A N AI +R + ++ Sbjct: 254 SGTRSSAGEFGHMIHKPGGALCRCGRMGCIEAYAGNYAIWRRASGRSPEERP-VADIEAG 312 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 ++ + + A + A + GR +G + L +P + I G+ T A +L P I Sbjct: 313 EMEKLAQRARCEEGPARQAFREAGRAIGFGLGNLFALIDPAPVAIIGQGTAAFDILEPEI 372 Query: 356 ESCIN-----TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNG 397 S + A +P R + H +A+ A + R + G Sbjct: 373 RSALAETAGGQHAEAISFETMPRARPLILHGAAMTALTDLDRHVFAG 419 >UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5GK61_9ACTO Length = 402 Score = 290 bits (742), Expect = 8e-77, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 155/381 (40%), Gaps = 7/381 (1%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 A V LI GPISR+++ + + L +++ I R+LIE G+++E +T G+ + Sbjct: 8 RALVVDLIRSSGPISRVELVKSTGLTQPTISNIVRRLIEDGVVRETGDTVATRGKPRSLL 67 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFID 138 V + + IG+ L T + D + P + + AL + Sbjct: 68 VINSHAAYGIGIHLATDALTCVVTDTRGGTVGRLLVAAPPSGDPEAVTEALAGLYRDVVA 127 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPH-IQVENWGLVEALEERFKVTCFVGHDIR 197 R + ++V+ PG VD G +P L AL V V D Sbjct: 128 GLGLPARGVAGLAVVGPGPVDVAQGSFLALPGRSPATGLALAPALGGALGVPVLVDSDAS 187 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 + + E + + ++ G G+G++ +G + G + N G++GH V G C Sbjct: 188 AATVGEFWGRQVSRARTFGCLYMNSGIGSGVVLDGALHRGASSNAGKLGHTAVVRGGREC 247 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD---DCTIKTICKAANKGDSLASEV 314 CGN GCLE AA + +R L + R+ D + +AA GD A + Sbjct: 248 PCGNRGCLEQYAAPRVLVERARALPGLARRLRIAEGDPVDRAFDVLARAALYGDEAARAL 307 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPAIESCINTQALKAFRTNLPV 373 ++ L + NL++ +V+AG A + + AI + + A + V Sbjct: 308 LDESAELLAEAAVTLTNLWDLDTLVLAGPGFAAAGSLYVSAIRARLAASAFTRGVHEVTV 367 Query: 374 -VRSELDHRSAIGAFALVKRA 393 + S +AIG ALV + Sbjct: 368 DLSSNPRDAAAIGGAALVLQG 388 >UniRef50_A6NTH3 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NTH3_9BACE Length = 377 Score = 290 bits (742), Expect = 9e-77, Method: Composition-based stats. Identities = 78/376 (20%), Positives = 154/376 (40%), Gaps = 24/376 (6%) Query: 15 VKQLNSAAVYRLIDQY-GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 ++++N V+R + P+++ +A Q ++ ++T+ +L+ GL+ + S+GG Sbjct: 12 LRKMNRNRVFRALYHTTQPLTKQDLAYQLSMSLPTLTQNLSELMAMGLVDNSETAGSSGG 71 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 R+ + A+GV + + DL + L + LP + L + Sbjct: 72 RKPRILSVVPGARWALGVEISSRHIRLVALDLQVRELGFRAFDLPFHAGEEYAVRLAQTV 131 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 FID +L+ + V +PG+VD + P + V + A+ + + Sbjct: 132 ECFIDELALDREKLLGVGVSIPGIVDAAQQSVTTAPTLGVNRLDVR-AIAQHIPYPVCLV 190 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D + AE + +D + + RG G I ++G ++G +G GE GH+ + P Sbjct: 191 NDANAGGFAECW--GRSGVQDMAYLSLSRGVGGAIFTSGTAYLGASGRSGEFGHMCIHPG 248 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G C CG GCLE + A + + T++ + ++GD + Sbjct: 249 GVPCSCGRKGCLEAYCSTARLSDDM---------------GITLEDFFQTLSQGDDAFAA 293 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN--L 371 + L I + Q IV+ G+++ + I+ + + A++ L Sbjct: 294 LWAQYLDDLSVGILNIHAALDCQ-IVLGGKLSRFMEEKFDDIDGRL-RRLDPAYQEAPYL 351 Query: 372 PVVRSELDHRSAIGAF 387 + R DH + IGA Sbjct: 352 SICR-YYDHSNGIGAA 366 >UniRef50_D2PPN2 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PPN2_9ACTO Length = 402 Score = 290 bits (742), Expect = 9e-77, Method: Composition-based stats. Identities = 104/377 (27%), Positives = 168/377 (44%), Gaps = 14/377 (3%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 + L+ GP +R IA L+PA+VT++T+ LI RGLI+E++ S GGR A + Sbjct: 18 IVGLLGTQGPTARTAIARTLGLSPATVTQVTKDLIARGLIEELESVPSNGGRPARLLGLV 77 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQR 142 A+G ++ I +L V + + L L +AQ + + Sbjct: 78 QDAGVALGAKVTADHVAIVTVELDGTVRSSVSHDYDPGADDALPR-LGRILAQEVAALD- 135 Query: 143 KLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALA 202 L+ + V +PG VD + I P + + + +L V +D+ +LA A Sbjct: 136 --DRLLGVGVGVPGSVDSQASGIVDAPTLSWQAAPVGPSLRAAIGSPVLVDNDVNTLAAA 193 Query: 203 EHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV---EPLGERCHC 259 E +G + ++V + RG G GI+ +G I+ G NG GEIGHI V E C C Sbjct: 194 ERLYGIGRAHSSYLVVTIGRGIGCGIVVDGGIYRGANGGAGEIGHIPVWHDEQDQLPCTC 253 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 G+ GCLE A + + + G + +P T+ +AA GD A +V G Sbjct: 254 GSTGCLEAHVGAAGLCRTARDRGVIGPRGTLP-------TLLRAAATGDEAARQVFAAAG 306 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 LG+ +A I+ +P+ +V+ GE + + E L A + VV + Sbjct: 307 AMLGRALAGVIHTIDPEVVVLMGEGVDGWQYWQTGFEPSFRRSLLPARKAVPVVVEPWTE 366 Query: 380 HRSAIGAFALVKRAMLN 396 + A GA +LV + + Sbjct: 367 DQWARGAASLVLASPFD 383 >UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MXJ9_SACVD Length = 413 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 94/402 (23%), Positives = 159/402 (39%), Gaps = 46/402 (11%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 + V++ N A V I ISR +A ++ L A+V+ + +L+ L++E +Q Sbjct: 6 PADQHTVRRHNCALVLDTIAASPGISRAGVAARTGLTKATVSSLVDRLVTASLVREDGRQ 65 Query: 69 ASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT--L 125 +G GRR S+ H +GV + T L L+ +V E + R + + Sbjct: 66 HRSGPGRRGTSLSLSPHGPHGLGVEIAVDHVTTCLIGLTGEVRDEHTRRVDNRGRSVGRV 125 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 + + + +D R + I V +PGLV+ +G + P++ + L+ L R Sbjct: 126 LARIAREMNEALDRAHRNGIVVGGIGVAVPGLVEAANGWVRMAPNLGWRDVDLITELHRR 185 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDC------------------EDSILVRVHRGTGAG 227 V E G D + + V G GAG Sbjct: 186 VAVP-----------FGELVVGNEADLAALAELAAPRLHCEDAAPDSFVYVSGEVGVGAG 234 Query: 228 IISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ 287 I+ +G +F G +G GE+GH V+ G RC CG GCLE +A AI R Sbjct: 235 IVLDGELFRGTHGFGGELGHFPVQQRGPRCSCGARGCLERLAGQDAILDRA--------- 285 Query: 288 SRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 + T+C GD A+ GR LG ++ +NL + +V+ G Sbjct: 286 -----GVDDVDTLCVRLEDGDRTAAAAARSAGRLLGTALSGVVNLLDVSTVVLGGIYARL 340 Query: 348 DKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFAL 389 L + + + + + ++ V RS + +A+ A+ Sbjct: 341 YPWLAGPLHTELTARVVSTPWRSVDVRRSTVGPEAAVRGAAI 382 >UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acnes RepID=D1Y8Z8_PROAC Length = 403 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 85/395 (21%), Positives = 166/395 (42%), Gaps = 14/395 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE-VDQQA 69 + ++ +N A + + PISR +++ ++ L+ AS+T + +L RGL++E + Sbjct: 12 DHGTMRTINLALLLGALRSE-PISRAELSRRTHLSKASITNLAAELAARGLVREGSPDRN 70 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ--TLEH 127 T GR + E +G+ + + + DL VL + P + + Sbjct: 71 GTVGRPGTMLTLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDVASLPISDVLD 130 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + + ++ R + + V PG++ +G +H ++ + L L +R Sbjct: 131 EVAGIMRDTLEQLHSARRHVAQVMVSAPGVIKQPAGTVHLASNLGWRDVPLRSQLLQRLD 190 Query: 188 VTC--FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 V +D + A+AE+ D D + + G GAGII+ G++ G +G GE+ Sbjct: 191 ADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLMRGWSGFSGEV 250 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ ++P CHCG GC E + L R+ + I A Sbjct: 251 GHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLDAQPIDRLLI------QIQDRAT 304 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +GD ++ + L + +++ I++ NP+ +V+ G + L+P I + + + L Sbjct: 305 RGDQQVLNALDNLATSLAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTARRLD 364 Query: 366 AFRTNLPVVRSELDH-RSAIGAFALVKRAMLNGIL 399 L + ++L SA GA ++ L Sbjct: 365 PGAGAL-LAGAQLGMVSSAHGAALTALDSVFANPL 398 >UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B509AF Length = 408 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 168/391 (42%), Gaps = 13/391 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 V L+ SR +IA +S L +V K L+ RG+++E++ S GR + Sbjct: 21 LRKVLDLVVSGEATSRAEIARRSGLVRTTVGKQVDHLVARGILEELESSESVRGRPPRVL 80 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFID 138 R + + + + DL+ +VLA+E + +T+ + + + Sbjct: 81 TLSPRAGTVAVADVDTLASQVAIADLTGRVLAQETVGVRIATGPETVLETVTERLMALLA 140 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIR 197 R + A+ + LP VD G + + + + L +RF+ V +D Sbjct: 141 QCGRDSGRVRAVVMGLPAPVDFQRGCTVRPTGMPGWGGYPVADELRKRFRCPALVDNDAN 200 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGII-SNGRIFIGRNGNVGEIGHIQVEPLG-- 254 +AL E G QD + +++ G GAGI+ + G ++ G +G G+IGHI+ G Sbjct: 201 LMALGEA--GQEQDGTPLVCIKISAGVGAGIVTAEGELYRGADGAAGDIGHIRAVGGGGD 258 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CGN GCL +A+ A+ + + +S ++ + + + A Sbjct: 259 VLCSCGNDGCLSALASRPAVLRSLGI-----PESTDEDPLHGVRVLAERVADNEPNAVRA 313 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 + G +G+ A+ +++FNP+ +V+ G ++E LL + + + + L + + + Sbjct: 314 LRQAGTDVGEIAAMLVSMFNPRTLVVGGPLSELRDDLLSGVRAVVYQRGLALATSKMTIT 373 Query: 375 RSELDHRSAI-GAFALVKRAMLNGILLQHLL 404 L + I G AL R + + + ++ Sbjct: 374 TPRLGESAGIHGGIALATREVFSAQGVARMM 404 >UniRef50_C2BT73 Transcriptional repressor n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BT73_9ACTO Length = 442 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 168/393 (42%), Gaps = 19/393 (4%) Query: 13 DLVKQLNSAAV-YRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 + ++ N + YR+I +SR +A ++ L ++VT++ L++ G+I+E + Sbjct: 35 ESLRNHNLQLLTYRIITGSEVMSRADLAHETGLNRSTVTRLIEHLLDFGIIREGSTRVGP 94 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAE--EHYPLPERTQQTLEHAL 129 GR +I + R IG +GR + + DL ++AE + +P + Q+ L Sbjct: 95 SGRPSIMLTPARRTHGGIGAEVGRDYISACVMDLRGNIIAEQFDQVDVPAYSPQSTLGKL 154 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + + Q L I+ G++ + +H PH+ N L + + + Sbjct: 155 ATMVNELTSQIQHSGLSLCGITCGFSGIISSSTSNLHMSPHLGWRNIDLEKHFRSKLHIE 214 Query: 190 CFVG--HDIRSLALAE--HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 V + ALAE + D I + + G+ ++ +G++ G +G GEI Sbjct: 215 VPVDYQNTANLSALAESIARQKTGHELSDFIFISQNSAIGSALVLDGKVSSGLHGWAGEI 274 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 HI V + C CG GCL+ A + +R G + P + + + + Sbjct: 275 AHITVSDEDKPCDCGAVGCLDAYIDKANLLERA------GLPANAPW-----EQLFASLH 323 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 KG++ +E + GR+LG+ ++ INL + IV+ G + + A+ + +AL Sbjct: 324 KGNAQVTETVRLCGRYLGRALSTYINLVDVTTIVLGGVLKKLLPYYEDALRDELTRRALC 383 Query: 366 AFRTNLPVVRSELDHRSAI-GAFALVKRAMLNG 397 + + + S + S++ GA L+ Sbjct: 384 SNWMEIDLQESIVKEGSSLQGAAWNSLLRFLSA 416 >UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c RepID=D1VEG0_9ACTO Length = 423 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 103/407 (25%), Positives = 170/407 (41%), Gaps = 29/407 (7%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIE-RGLIKE-VDQQA 69 + +++ N + + R + GP R + Q+ L +++ + L GL++E Sbjct: 15 QEELRRHNLSLLLRYVHLAGPTQRATLTAQTGLNRSTIGALAADLASTAGLVREESPDTH 74 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEH 127 S GR ++ +V ET + + LG L +L+ E PLP ER + Sbjct: 75 SGAGRPSLVVVPETERYQVLAFDLGVDRIIAARVGLGGALLSREVVPLPPGERGFTAVVD 134 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF- 186 + ++ L I V +P +V G + + P++ E L AL Sbjct: 135 LTAATARRLAEALG-PLTHCAGIGVAVPAVVRSADGFVRFAPNLGWEQQPLGAALRAALV 193 Query: 187 -KVT------------CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGR 233 + V +D ALAEH G ++ +D + + G GAGII NGR Sbjct: 194 DALPDRAIGGPVGSPAVQVANDADLGALAEHARGVARGHDDIVYLSGQVGLGAGIICNGR 253 Query: 234 IFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD 293 G G GE GH+ V P G+RC CG GC ET AI + P D Sbjct: 254 PLRGHGGYAGEAGHMIVNPTGQRCRCGARGCWETEIGTDAILRAA---------GHEPGD 304 Query: 294 DCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLP 353 +++ + A+ GD+ A + V R L + +NLFNP+ ++ GE+ + +V+ Sbjct: 305 GGSVRAVVAEASAGDARARLALYEVSRWLAVGVGNLVNLFNPELVIFGGELRDLLEVVEH 364 Query: 354 AIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGIL 399 + + L R ++ +V S L S++ GA L +L+ L Sbjct: 365 DVVGRMGAGGLTVSREHVALVPSALGGDSSLFGAAELAFAHLLDDPL 411 >UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCX5_ACTMD Length = 382 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 170/388 (43%), Gaps = 25/388 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG-G 73 +++LNSA V I SR +A ++ L A+V+ + ++I L+ E +A +G G Sbjct: 1 MRRLNSALVLDAIASAPGSSRASVATRTGLTKATVSSLVDRMIGAALVVEGAAEARSGPG 60 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 RR ++ H +GV +G L DL+ +V + + + + +L + Sbjct: 61 RRGTALHLSPAGPHGLGVEVGVDYLATCLVDLTGRV--RKRWVRDSDNRASSPALVLGEV 118 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK-----V 188 A + R+ + I V +PGLV+ SG + P++ + L + Sbjct: 119 AAAVRIATREDVPVGGIGVAVPGLVESASGVLRVAPNLGWREVDVRGELGRLLGADAGGL 178 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 VG++ ALAE + G + +D + V G GAGI+ + +F G +G GEIGH+ Sbjct: 179 PVQVGNEANLAALAELWHGDAP--QDFVHVSGEIGIGAGIVVDAGLFEGVSGFGGEIGHL 236 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 V+P G RC CG+ GCLE +A I + + + + D Sbjct: 237 SVDPSGPRCTCGSRGCLERLAGQDEILRAA--------------GAADVADLLARLDADD 282 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A + R LG ++ A+NL +V+ G + L P +E+ + + + A Sbjct: 283 REAVAAVRTAARWLGIALSGAVNLLGLPAVVLGGAYARLEPWLRPTLEAELGGRVVSAAW 342 Query: 369 TNLPVVRSELDHRSAI-GAFALVKRAML 395 + + V S L +A+ GA RA+L Sbjct: 343 SPVAVTASSLGDEAAVRGAATSAVRAIL 370 >UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDD5_THET1 Length = 321 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 90/317 (28%), Positives = 152/317 (47%), Gaps = 10/317 (3%) Query: 84 RNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRK 143 N + IGV LG L + + L +P + +L I + + S Sbjct: 2 SNRYVIGVDLGGSRVRAVLANEKGEFLDRCEFPT---LADKGLYFVLERILECVRSVSSN 58 Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALA 202 + AI V PG ++ G + P++ N L + +EE+ + F+G+D AL Sbjct: 59 APRIDAIGVGAPGPINSKEGVVSNPPNLPGWVNVPLAKLIEEKTGIPTFLGNDANLAALG 118 Query: 203 EHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNF 262 E +G+ + + I + V G G GII +G++ G NG GE+GH+ V+P G +C CG + Sbjct: 119 EFTYGSGKYVQHLIYITVSTGVGGGIIIDGQLLEGHNGAAGEVGHMVVQPGGPKCSCGGY 178 Query: 263 GCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKGDSLASEVIEY 317 G LE +++ AI +R + + +D K + +AA KGD LA +++E Sbjct: 179 GHLEALSSGTAIAKRAREAASLNKDTIMIELAGSVDKINAKIVDEAAKKGDPLALKLLEQ 238 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 G+ LG + I++FNPQ I I G ++EA ++LL + + F+ +L +V++ Sbjct: 239 AGQWLGYALINLIHIFNPQMISIGGGVSEAGELLLGPARKVVFEGLMPVFKQDLQIVKAS 298 Query: 378 LDHRSAI-GAFALVKRA 393 L + GA AL + Sbjct: 299 LGGDVGLAGAVALALQE 315 >UniRef50_B2UXG9 ROK family protein n=4 Tax=Clostridium RepID=B2UXG9_CLOBA Length = 375 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 167/392 (42%), Gaps = 26/392 (6%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N++ VK+ N +YR I S+ +IA+ +++ ++T+ + L+E GLI E + Sbjct: 5 KTTNIE-VKKYNKNTIYRFIYNSEKTSKQEIAKNLEVSLPTITQHLKSLLEDGLIIEDGE 63 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 STGGR+A +I+ + A+G+ + ++ +I L DL +L Sbjct: 64 FESTGGRKAKAIMCVKDSRLAVGLDITKNHISIVLIDLGGNILRNIRIEKRFENIADYYK 123 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + + +FI++ K +++ + + +PG+V D +I +Q++N E L++ Sbjct: 124 NVGKVLCEFIENSTFKNSKILGVGISIPGIVSADQKEITNSHVLQIKNVQ-CEELKKYIP 182 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 C +D + AE + S+ ++ I + + G I N +++ G N GE GH Sbjct: 183 YDCIFCNDANAAGKAELWNDDSK--KNIIYLSLSNSVGGAIFYNKKMYFGDNERSGEFGH 240 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 + + P G++C+CG GC++ + + L N Sbjct: 241 MIIIPDGKQCYCGQKGCVDAYCSAKVLADSAGGSLSN---------------FFTLLNNK 285 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 + ++ + +L I +F+ I++ G + + I+ ++ F Sbjct: 286 NKEQVQIWKEYINNLSIVINNLRMVFDC-TIILGGYVGAYLDENIKGIKEIVSKH--NTF 342 Query: 368 RTNLPVVRS---ELDHRSAIGAFALVKRAMLN 396 +RS +L SA+GA L +N Sbjct: 343 GIETKYLRSCHYKL-ESSAVGAALLQIEKFMN 373 >UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAB7_DICT6 Length = 375 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 92/384 (23%), Positives = 177/384 (46%), Gaps = 31/384 (8%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 + + N V ++ + GP SR ++A S+L ++++I +LIE+ ++ E+ + ++ Sbjct: 7 PEYIGLYNKNLVLEILIKTGPKSRAELARISKLTKTAISEIVDELIEKNILVEIGKVETS 66 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GRR + + + L + + D S KV + +YP+ + Sbjct: 67 RGRRPTKLTINPD-LKILAIDLSGLEGRSGIVDASGKVEEDFYYPIKRKED--------- 116 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF-KVTC 190 + + ID +K + +IAIS+ +PG+++ +G++ + N+ L E L+ER+ + Sbjct: 117 -LFELIDPLLKKYKNIIAISISVPGIINKYNGEVILSVGLNWRNFLLKEFLKERYPNLPI 175 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 ++ D S L+E +FG + + +G G GI NG I G N GEIGH V Sbjct: 176 YIEKDTNSGLLSELWFGEGKKFNILFYLLFEKGIGLGIYYNGNIIEGFNNIEGEIGHTIV 235 Query: 251 EPL-GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 E C CGN GCLETIA+ I+++ D ++ K+ N+GD Sbjct: 236 NGDIAEICWCGNKGCLETIASFPKIQEKFS-------------DFKLLEESLKSYNQGDK 282 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG--EITE-ADKVLLPAIESCINTQALKA 366 +E + R+LG ++A A+++ P+ I +AG +T + ++ ++ + Sbjct: 283 D--PFLEEIFRYLGISLANAVHIIAPEAICVAGNRGMTRNILNLFTEILKKEVDKYIFEY 340 Query: 367 FRTNLPVVRSELDHRSAIGAFALV 390 + + S L + + ++ Sbjct: 341 LKDKIYFYASPLGNDGLLIGAGIL 364 >UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=2 Tax=Clavibacter michiganensis RepID=B0RFZ3_CLAMS Length = 444 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 91/412 (22%), Positives = 164/412 (39%), Gaps = 22/412 (5%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQY-GPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + N+ + N V + + SR +IAE++ L+ +VT ++R+LI+ GL++E Sbjct: 24 MRRGTNLPAIGGYNRTVVLDAVRRAAEGASRSEIAERTGLSAQTVTNVSRRLIDEGLVRE 83 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQ 123 G+ + A+GV + T L DL VL P P + Sbjct: 84 GGTVIRGPGKPRTLLHLVAGGRFAVGVHMDPAVITSVLLDLEGTVLRHVSSPTPSASRPD 143 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEAL 182 + + + I ++ + + PG +D +G + P + + L AL Sbjct: 144 EVVALVARLVDGLIAGAGVDRGAVLGVGLAAPGPIDVGAGLVLDPPMLPHWRHVPLRSAL 203 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + + D+ + A+AE +FG D V G G G++ G G + N Sbjct: 204 STATGLPVLLEKDVTAAAVAELWFGPG-DRRHLAFVYYGTGFGTGLVLGGEPVRGASSNA 262 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLN--LLKQGYQSRVPLDDCTI--- 297 G+ GHI V G RC CG GC+ + A+ ++ + +L+ G S L++ Sbjct: 263 GDAGHIMVAARGRRCTCGRVGCVGELITPHALVRQAVEGGVLRAGDVSDAALEEAAASGD 322 Query: 298 -----------KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE 346 + A+ D A ++E RHL + I I +NL + ++V G Sbjct: 323 AVDMRLIGEAFHALAARADTEDGSARRIVEAAARHLARAIVIQVNLLDLDEVVCGGPFWH 382 Query: 347 -ADKVLLPAIESCINTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLN 396 +++L + + + + VV S + +A+GA LV + Sbjct: 383 PIARLVLETLPEEVRRSPALIAKHPVRVVESAVGEDVAAVGAACLVLDNAFS 434 >UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGB0_EUBR3 Length = 412 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 87/409 (21%), Positives = 175/409 (42%), Gaps = 22/409 (5%) Query: 6 QAQIG-NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + G ++D VK N + + +++ + G +SR IA Q L PA+VT + ++E +I E Sbjct: 1 MVKTGISLDSVKNNNKSQILKILQKNGAMSRKDIANQIGLTPAAVTMLCNDMMEAHMILE 60 Query: 65 VDQ--QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-T 121 + + GR+ + + + + V + D +IT+ ++ VL E Sbjct: 61 KGEMKEQKRAGRKKVLVDINYDFKYIVSVNIEAVDTSITVTNIRGNVLVETKVHTRTDIE 120 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 Q L I + + KL +++ I + +PG+VD ++G + I + E Sbjct: 121 PQLFLEELAKEIKLQLWEKELKLSDILGIGICVPGIVDRNNGISIHAYGIWNNQVKIREI 180 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 LE++ + + +++++ A AE +G + + + ++ G G+ I+ + +++ G N Sbjct: 181 LEKQIQCPVILENNVKAFAEAEMLYGVGKYGNNIVFIKWGPGVGSAIVVDNKLYEGNQHN 240 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQG-----YQSRVPLDDCT 296 EIGH +EP G +C CG GCLET + A+ R+ + + Y+ + Sbjct: 241 AAEIGHYIIEPDGLKCRCGRQGCLETRVSMFALCDRIKEIYSKENTPVLYEETAGDKNLI 300 Query: 297 IKTICKAANKG---------DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 + + + + D SE++ + + + + P ++ G + E Sbjct: 301 TRELLTSWVENEGNGYITRMDKTISEILVGAIERMARVAVNVLTILAPDCTIVFGSMFEN 360 Query: 348 DKVLLPAIESCINTQALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAML 395 + I+ C T+ + RS L D + IG AL+ Sbjct: 361 TSIYKLFIQYCTK---YDENYTDKLISRSHLSDKMAYIGGTALIASTYF 406 >UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LD35_9FIRM Length = 459 Score = 287 bits (735), Expect = 6e-76, Method: Composition-based stats. Identities = 104/411 (25%), Positives = 182/411 (44%), Gaps = 32/411 (7%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG-GR 74 KQ N + +LI +RI++++ + L +VT I + I++GL+ E ++ + GR Sbjct: 54 KQFNRGLLLKLIATQNCRTRIELSKATGLTKMTVTNIVSEFIQQGLVAEREEVQTEVCGR 113 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 I + + IG+ + R L LS + LA E T++ L + I Sbjct: 114 NPILLEISGKAPKVIGLLIFRDRIEAVLCTLSMQKLASESIHFDSLTKEQLYAHCFSVID 173 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVG 193 + ++ K + + I V G VD G I P ++N + EALE+R+ + F Sbjct: 174 RLLE----KEKNIFGIGVAAIGPVDIWKGVILNPPRFYGIQNVPVREALEKRYALPVFFD 229 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 HD S ALAE FG ++ +D + V + G G+GI+S GR++ G EIGHI ++ Sbjct: 230 HDNNSAALAELLFGIGRNVQDFLFVGISNGIGSGIVSGGRVYHSHRGLPPEIGHISIDRR 289 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR--VPLDDCTIKTICKAANKGDSLA 311 G C CGN GCLE A + +++ + + D C+ A +G S A Sbjct: 290 GPLCACGNRGCLELYANTHIVLEKLRAAKGRAFSGERCAGPGDALSANFCR-AEEGASFA 348 Query: 312 ----------------------SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 E+ E + + + + ++N+ +P+ IV+ + + D+ Sbjct: 349 DFCREEGASFADFCRAPQTAETEEIFEEMLQDVSAALVTSVNILHPEMIVLGHDCIDWDE 408 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGIL 399 L+ +E +N + + + LPV ++ + IGA M G + Sbjct: 409 RLVGRLEELVNERKVVHDQRPLPVKKAYFGKEAQLIGAACNAVDQMFRGFV 459 >UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X1U5_OCHA4 Length = 417 Score = 286 bits (733), Expect = 9e-76, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 162/388 (41%), Gaps = 27/388 (6%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N + ++ N V ++ ++GP+ R+ IA + L ++ I +L+ L+ ++ + Sbjct: 32 NPERIRDHNRRVVLDVVRRHGPLGRMHIARLTHLTAQAIANIVDELVSENLLMQLGRLKK 91 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 G+ I IGV +G T+ DLS K + P+ + + + L L Sbjct: 92 GRGQPPIQFAVNPEGAMTIGVEMGSTHMVTTVLDLSGKPRTQHVRPIQDVSPERLSTQLR 151 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVT 189 + S+ L+ I V++PG D + + L E + Sbjct: 152 KEVDAVKTSFPA---RLLGIGVVMPGPFDIEGMSSVGPTTLPGWSGIDAAAVLSEACGES 208 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D + A+ E FGA + ++ G G G+I +G F G GN GEIGHI Sbjct: 209 VLVENDANAAAVGERLFGAGHAISNFAMIYFGAGIGLGMIQDGAPFRGAFGNAGEIGHIV 268 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + P G C CG GCLET A+ + +++ ++D + K + Sbjct: 269 ITPNGRSCACGQKGCLETYASLHTLREKLHAA---------GIEDTDFDALEKLHGNRNP 319 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA--DKVL-----LPAIESCINTQ 362 + ++ HL IA+ N+ +P+ I++ G + +A D ++ LP + + Sbjct: 320 VLMGWVQEAADHLAPMIAMIENILDPETIILGGMLPDAIIDDLIWHMGGLPISVASRRAR 379 Query: 363 ALKAFRTNLPVVRSELDH-RSAIGAFAL 389 AL V+R + +A+GA +L Sbjct: 380 ALP------RVIRGQTGQFTAALGAASL 401 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 19/321 (5%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLR 145 +AIGV LG + I + +L + +R ++ + + +AI YQ Sbjct: 3 YAIGVDLGGTNLRIAAVEERGTLLEKVTLGTQVQRGREYVVGQMTDAIRHVTTKYQ-DHG 61 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 +LI I + +PG +D D+G + P++ N+ + + +E R + +D + A+ E Sbjct: 62 KLIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGTKVILENDANAAAMGEK 121 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + GA +D +D ++ + G G GII GR++ G NG GE+GH V P G C CGN GC Sbjct: 122 WLGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHHTVLPDGHICGCGNHGC 181 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLD-----DCTIKTICKAANKGDSLASEVIEYVG 319 LE A+ A+ + + G + + + K I + A +GD A E+ VG Sbjct: 182 LEQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQLAIQGDKAAQEIFNTVG 241 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL----------KAFRT 369 +G +A +N N VI G + A + + ++ A + Sbjct: 242 HSIGIAVANMVNALNFPMYVIGGGVASAWDAFHNPMMEEVRKRSFIYRVTAPEAVAAGQK 301 Query: 370 NLPVVRSELDHRSAI-GAFAL 389 V R+ L + + GA L Sbjct: 302 RTIVTRALLGGDAGLFGAARL 322 >UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID=A6WEF3_KINRD Length = 390 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 33/383 (8%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-QQASTGGR 74 + N + V L+ GP+SR +A + L +V++I L+ GL+ E+ + G+ Sbjct: 35 RAHNRSVVLGLLFHEGPVSRADLARATGLTRVTVSEIVGDLLTDGLVAELGLRPEGRVGK 94 Query: 75 RAISIVTETRNFHAIGVRLGRH-DATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 A+ + H + V L R A + + DLS V++E + + AL + Sbjct: 95 PAMMVGLRAAEHHVVAVDLQRLPAARVAVLDLSGTVVSETTADVTGLRGEDATAALEDLC 154 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 I + ++ + + PG+VD +G++ + + L E L V V Sbjct: 155 RAGIAGAP---QRVVGVGIGTPGIVDA-TGRVVESARLGWRSVPLAERLSHALGVGVHVA 210 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D + ALAE +G + ++V V +G GAG++ +G + G GEIGH+ V+P Sbjct: 211 NDADTAALAEFTYGEASPSG-FMVVAVGQGVGAGLVLDGHLVRGHRLAAGEIGHLTVDPR 269 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 GE C CG GCLETI A A +++ + +S Sbjct: 270 GEPCECGRRGCLETIVAPAYLDRTLAGRTPARRRS------------------------- 304 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 + G LG +A + + +++++ G D LL A + T L T V Sbjct: 305 ALRDAGHRLGAVLAPVVAALDLEEVILTGPAELLDGPLLEAARETVQTTCLPTEGTAPQV 364 Query: 374 VRSELDHRSAI-GAFALVKRAML 395 ++L + GA ALV Sbjct: 365 RMAQLGANGVLQGAAALVLSGEF 387 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 446 e-124 UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 445 e-123 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 444 e-123 UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU 442 e-123 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 440 e-122 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 440 e-122 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 440 e-122 UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 434 e-120 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 433 e-120 UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 432 e-119 UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acid... 424 e-117 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 422 e-116 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 421 e-116 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 421 e-116 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 420 e-116 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 418 e-115 UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n... 416 e-115 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 414 e-114 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 412 e-113 UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D... 410 e-113 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 410 e-113 UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID... 407 e-112 UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus ... 407 e-112 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 407 e-112 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 404 e-111 UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n... 403 e-111 UniRef50_Q9K992 Transcriptional repressor of the xylose operon n... 403 e-111 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 401 e-110 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 400 e-110 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 400 e-110 UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp... 400 e-110 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 397 e-109 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 395 e-108 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 394 e-108 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 393 e-108 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 393 e-108 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 385 e-105 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 384 e-105 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 384 e-105 UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterale... 384 e-105 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 383 e-105 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 383 e-105 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 381 e-104 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 381 e-104 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 380 e-104 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 380 e-104 UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR... 378 e-103 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 375 e-102 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 375 e-102 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 374 e-102 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 374 e-102 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 373 e-102 UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 369 e-101 UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=... 369 e-100 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 368 e-100 UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N... 367 e-100 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 366 1e-99 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 365 2e-99 UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6L... 363 7e-99 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 363 7e-99 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 363 8e-99 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 363 9e-99 UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida f... 362 1e-98 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 362 1e-98 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 361 2e-98 UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metallir... 361 3e-98 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 361 3e-98 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 360 4e-98 UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5R... 360 6e-98 UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=... 359 7e-98 UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Sa... 359 1e-97 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 359 1e-97 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 358 2e-97 UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=A... 358 2e-97 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 357 4e-97 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 357 4e-97 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 357 5e-97 UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n... 356 7e-97 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 356 8e-97 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 356 8e-97 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 356 9e-97 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 356 1e-96 UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK... 355 1e-96 UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella for... 354 2e-96 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 354 2e-96 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 354 3e-96 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 354 3e-96 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 353 6e-96 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 353 7e-96 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 353 8e-96 UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytoferm... 353 1e-95 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 352 1e-95 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 352 1e-95 UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsul... 352 1e-95 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 352 1e-95 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 351 2e-95 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 351 4e-95 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 350 5e-95 UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n... 350 7e-95 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 349 8e-95 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 349 1e-94 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 348 2e-94 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 348 2e-94 UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix oreni... 348 2e-94 UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiph... 348 2e-94 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 348 3e-94 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 347 4e-94 UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevi... 347 5e-94 UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS61... 347 5e-94 UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea b... 346 6e-94 UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5E... 346 1e-93 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 346 1e-93 UniRef50_B2V1I0 Putative transcriptional repressor of the xylose... 345 2e-93 UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus fae... 345 2e-93 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 344 2e-93 UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostri... 344 3e-93 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 344 3e-93 UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminoc... 344 3e-93 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 343 1e-92 UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=S... 342 1e-92 UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitan... 342 2e-92 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 342 2e-92 UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM... 341 2e-92 UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID... 341 2e-92 UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curviba... 341 3e-92 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 341 4e-92 UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterale... 340 4e-92 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 339 9e-92 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 339 1e-91 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 338 2e-91 UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae... 338 2e-91 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 338 3e-91 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 338 3e-91 UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bif... 338 3e-91 UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostri... 338 3e-91 UniRef50_D2BD51 Transcriptional repressor of the xylose operon n... 337 4e-91 UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=M... 337 6e-91 UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Mi... 336 6e-91 UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifi... 336 7e-91 UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiph... 336 7e-91 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 336 8e-91 UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostri... 336 9e-91 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 336 9e-91 UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B... 335 2e-90 UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar... 334 3e-90 UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulol... 334 3e-90 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 334 4e-90 UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiph... 334 4e-90 UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetal... 334 4e-90 UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostrid... 334 5e-90 UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 333 7e-90 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 333 8e-90 UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostri... 332 1e-89 UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavid... 332 1e-89 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 332 1e-89 UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enteroc... 332 2e-89 UniRef50_B2GIX7 Putative NagC family transcriptional regulator n... 332 2e-89 UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobact... 332 2e-89 UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=... 331 2e-89 UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacteriu... 331 2e-89 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 331 3e-89 UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile R... 331 3e-89 UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiph... 330 5e-89 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 330 6e-89 UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillu... 330 6e-89 UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerot... 329 1e-88 UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH 329 1e-88 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 329 1e-88 UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=S... 329 1e-88 UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobac... 329 1e-88 UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 328 2e-88 UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=... 328 2e-88 UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium ros... 328 2e-88 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 328 2e-88 UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318... 328 2e-88 UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=C... 328 2e-88 UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulol... 327 5e-88 UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Re... 327 6e-88 UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=M... 327 6e-88 UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Mic... 327 6e-88 UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus Rep... 326 9e-88 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 326 9e-88 UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O... 326 1e-87 UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=... 326 1e-87 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 325 1e-87 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 325 2e-87 UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidi... 325 2e-87 UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID... 324 3e-87 UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces R... 324 4e-87 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 324 4e-87 UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium... 324 5e-87 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 323 6e-87 UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 323 8e-87 UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminoc... 323 9e-87 UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acid... 323 1e-86 UniRef50_B0NGA7 Putative uncharacterized protein n=3 Tax=Clostri... 323 1e-86 UniRef50_D1NUM3 Transcriptional repressor in the Rok family prot... 322 1e-86 UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenen... 322 2e-86 UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp.... 321 2e-86 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 321 3e-86 UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C... 321 3e-86 UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacteriu... 321 3e-86 UniRef50_C4Z4E9 N-acetylglucosamine repressor n=1 Tax=Eubacteriu... 321 3e-86 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 321 4e-86 UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostri... 320 5e-86 UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia... 320 5e-86 UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c Rep... 320 6e-86 UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp... 320 6e-86 UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces h... 319 8e-86 UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Strepto... 319 1e-85 UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipart... 319 1e-85 UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepI... 319 1e-85 UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acn... 318 2e-85 UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepI... 318 2e-85 UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=... 318 3e-85 UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter Re... 317 5e-85 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 317 5e-85 UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridi... 317 6e-85 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 317 6e-85 UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=... 316 6e-85 UniRef50_B5GCP5 Transcriptional regulator n=2 Tax=Streptomyces R... 316 7e-85 UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus ... 316 8e-85 UniRef50_Q185Y3 Putative regulator of a specific sugar metabolis... 316 1e-84 UniRef50_C8XDB9 ROK family protein n=1 Tax=Nakamurella multipart... 316 1e-84 UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=... 316 1e-84 UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5... 315 2e-84 UniRef50_A6NTH3 Putative uncharacterized protein n=1 Tax=Bactero... 314 3e-84 UniRef50_C2BT73 Transcriptional repressor n=1 Tax=Mobiluncus cur... 314 4e-84 UniRef50_A8F699 ROK family protein n=1 Tax=Thermotoga lettingae ... 313 9e-84 UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum D... 313 9e-84 UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum D... 313 9e-84 UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID... 312 1e-83 UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A... 312 1e-83 UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (N... 312 1e-83 UniRef50_B9K0Q3 Transcriptional regulator ROK family n=3 Tax=Rhi... 312 2e-83 UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella va... 311 2e-83 UniRef50_A5N1R7 Predicted transcriptional regulator n=2 Tax=Clos... 311 3e-83 UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella for... 311 3e-83 UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID... 311 3e-83 UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophil... 311 4e-83 UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenu... 311 4e-83 UniRef50_A6DFD9 Probable transcription repressor n=1 Tax=Lentisp... 310 5e-83 UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1... 310 6e-83 UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium ... 310 7e-83 UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiph... 310 7e-83 UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5... 310 7e-83 UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X... 309 1e-82 UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G39... 309 1e-82 UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Pr... 309 2e-82 UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_... 308 3e-82 Sequences not found previously or not previously below threshold: >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 446 bits (1148), Expect = e-124, Method: Composition-based stats. Identities = 120/400 (30%), Positives = 200/400 (50%), Gaps = 7/400 (1%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 Q G+ L+K LN + V +I + GPISR I++Q+ L P +VT I L++ GL+K Sbjct: 1 MVQGMTGSFRLMKSLNRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVK 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQ 122 E AS GGRR + + N + IGV +G + L +L++++L + LP Sbjct: 61 EGRTGASKGGRRPVLLSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIKA 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 L + I + +++ I + + G+VD + G Y PH L E L Sbjct: 121 GEFMTILYRLVDDMITNSDVSRDKIVGIGIGMHGIVDEEKGISIYAPHFDFGELPLKERL 180 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E R+++ V +D R A+AE +FG ++ + + + V G GAG+I NG+I G + Sbjct: 181 EARYEIPVKVENDARCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQIHRGHHHIA 240 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTI 297 GE+GH+ V+ G +C CG++GCL T+A+ I +R ++ + G + + +D Sbjct: 241 GELGHMIVDLNGRQCTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMRENKEDIDG 300 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 + I +AA GD A E+ GR LG + IN NP +IV+ G + +A ++ + Sbjct: 301 EVIYEAALHGDEFAEELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFVMKPLVE 360 Query: 358 CINTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLN 396 +N +AL + S L H + +GA +L+ + Sbjct: 361 TVNRRALTDDARKTEITVSSLGSHSALLGAVSLILHDVFE 400 >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 406/406 (100%), Positives = 406/406 (100%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG Sbjct: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER Sbjct: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE Sbjct: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG Sbjct: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI Sbjct: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN Sbjct: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN Sbjct: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 210/399 (52%), Gaps = 10/399 (2%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI-KEV 65 Q G+ + +K LN A+ +I GPISR +IA+ ++L P +V I +LI+ ++ +E Sbjct: 5 PQTGSFEGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMVIEET 64 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQT 124 + S GGR+ I + +++ IG+ R + L K+ L T+ Sbjct: 65 GESKSHGGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPPTKDE 124 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L N + + + + K +++ I V + GLVDP G + PH+ +EN + + LE Sbjct: 125 YIDLLKNGVEKVLQQKRIKQNKVLGIGVGMHGLVDPQKGISIFSPHLHIENIPIKQELES 184 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 F + V +D+R+LALAE ++G +D + + + V G G+GI+ NG I+ G+ + GE Sbjct: 185 AFDIPVLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQYHSAGE 244 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP------LDDCTIK 298 IGH V+ G RC CGN+GCLE A+ AI RV L+ G + + TI+ Sbjct: 245 IGHTVVDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKETDSQLTIE 304 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIES 357 + AA KGD+ EV+E GR LG +A IN+ P K+++ G I EA LL ++ Sbjct: 305 MVFDAAEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAGGNTLLSPLKE 364 Query: 358 CINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML 395 I +L+++ ++ +V S+L + IGAF LV + + Sbjct: 365 IIKKSSLRSYSDDVSIVTSDLGKKGMVIGAFTLVLKELY 403 >UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU Length = 384 Score = 442 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 197/393 (50%), Gaps = 12/393 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I + VK++N + + I + PISR +++E + L ++V+ L++ ++ E+ Q Sbjct: 3 IADQTFVKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTLMKESMVFEIGQG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGRR + +V + +++G+ +G L DL ++ +++ L + + + Sbjct: 63 QSSGGRRPVMLVFNKKAGYSVGIDVGVDYINGILTDLEGTIVLDQYRHLESNSPEITKDI 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L++ I FI + LI I + +PGL+D D KI + P+ + L +++E++ V Sbjct: 123 LIDMIHHFITQMPQSPYGLIGIGICVPGLIDKDQ-KIVFTPNSNWRDIDLKSSIQEKYNV 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ + A E FGA+++ ++ I V + G G G+I N ++ G +G GE+GH+ Sbjct: 182 PVFIENEANAGAYGEKVFGAAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGHM 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++ G +C CGN GC E A+ A+ + + + + I A+ D Sbjct: 242 TIDFNGPKCSCGNRGCWELYASEKALLKSLQ----------TKEKKLSYQDIINLAHLND 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 ++ G +LG + +N FNPQ +++ I E+ ++L ++ S ++++ Sbjct: 292 IGTLNALQNFGFYLGIGLTNILNTFNPQAVILRNSIIESHPMVLNSMRSEVSSRVYSQLG 351 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILL 400 + ++ S L + A+G ++V L+ I + Sbjct: 352 NSYELLPSSLGQNAPALGMSSIVIDHFLDMITM 384 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 129/400 (32%), Positives = 210/400 (52%), Gaps = 8/400 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 G+ L+K +N + + I GPISR IA++++L P +VT I +LIE L++E Sbjct: 1 MPVAGSFQLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEKLVRES 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQT 124 S GGR+ I + + +N IG+ +G + L DL+ +V + L T++T Sbjct: 61 KMGESRGGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGEVEGQTTVELSSDLTEET 120 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L L+ + + + ++I I + + G+VD SG + P+ Q+ N L E Sbjct: 121 LIDQLIKITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQLTNIDLKTPFES 180 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 F V FV +D R+LAL E +FG Q + I V V G GAGI+ N R+F G +G GE Sbjct: 181 TFDVPVFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIAGE 240 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIK 298 IGH V+ G++C CGN+GCL+T+A +++R ++ + G ++ + +D + + Sbjct: 241 IGHTTVDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRISGE 300 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 I + A GD L+ E++E G++LG I IN NP +I++ G +++A +L + Sbjct: 301 IIHQCALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVLEPLRKM 360 Query: 359 INTQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAMLNG 397 + +AL A VV +EL +AIGA LV + Sbjct: 361 VKERALTAKARETEVVTAELGEWGTAIGAVTLVLEDLFAP 400 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 121/399 (30%), Positives = 197/399 (49%), Gaps = 9/399 (2%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 +L++ +N V RL+ G +SR +AE++ L +V+ + +L+E G ++E+ S+ Sbjct: 5 PELIRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGESS 64 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GGR I + R IG LG L DL+ V + R L Sbjct: 65 GGRPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFKQRVESRDPLIEVDQLER 124 Query: 132 AIAQFIDSYQR--KLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 A+ +D R + + + + G++DP+ G Y PH QV + + L+ER + Sbjct: 125 AVRYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHYQVRDLPVAPMLQERLSLP 184 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 ++ +D R++A E FGA+Q ++ +RV G GAGII +GR++ G + GEIGHI Sbjct: 185 VWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGEIGHIM 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKA 303 V+ G RC CG+ GCLET+ + AI +R + + QG ++ + T+ +A Sbjct: 245 VKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIATTVIEA 304 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A+ GD +A E++ GR LG I INL NP ++I G + A L+ + + Sbjct: 305 ADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAGDYLIEPLRQAALERT 364 Query: 364 LKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGILLQ 401 L A R + +VR+EL + +G ALV + L+ Sbjct: 365 LPALRERVKIVRTELGEDAGPLGGAALVIEELFRTPTLK 403 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 116/397 (29%), Positives = 200/397 (50%), Gaps = 4/397 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 +IGN +L+K +N + V I GPISR I++ L ++VT I +L + L+ EV + Sbjct: 4 RIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHEVGE 63 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLE 126 STGGR+ I + + IG+++ ++ L +L S+++ + P T+ Sbjct: 64 ADSTGGRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSNTVL 123 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + ++ I + I + L+ I V + GLVD GK+ Y + N + LE +F Sbjct: 124 NMVVENIEKLITKIP-YNKNLMGIGVAVSGLVDQQKGKLIYSGMLNWSNVEIGNILENKF 182 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V ++ +D+ + LAE ++G ++ + I+V G G+GI+ N +++ G G GEIG Sbjct: 183 NVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGEIG 242 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL-DDCTIKTICKAAN 305 H+ + G +C CG GCLE A+ I + + +K +S++ L +D +I+ + + A Sbjct: 243 HMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEYAK 302 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +GD LA +V+ ++LG + INL NP I++AGE A ++LP I + K Sbjct: 303 EGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNFFK 362 Query: 366 AFRTNLPVVRSELDHR-SAIGAFALVKRAMLNGILLQ 401 + + SEL IGA L + L + Sbjct: 363 MHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPLYE 399 >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 116/399 (29%), Positives = 192/399 (48%), Gaps = 10/399 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + +V N AV I PI R +IA + L+ +V KIT + E GLI E ++ S Sbjct: 5 DKSIVGIHNKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYESGKRTS 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHAL 129 G+ + + IGV +G L DLS+K+L E P T + Sbjct: 65 EVGKPPKLLSFVPDAKYIIGVDVGTTHVGAVLMDLSAKILLREWAPTHDGHTFPQVLEQT 124 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + I + +D+ +++ I V +PGL+ ++GKI P I + L+ERF++ Sbjct: 125 IQCIQKILDASSEYAGKILGIGVGVPGLISVETGKIILSPAIGWHEGNFLAPLKERFRLP 184 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V + +R++A+ E +FGA + E+ + + G G+ I+ +I+ G G GE GH+ Sbjct: 185 VVVDNVVRAMAMGELWFGAGRGLENFFCIGLGYGIGSSIVIGKQIYSGSTGTSGEFGHMT 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKA 303 ++ G C CG +GCLE IA+ AI ++ + G S + L+D K + A Sbjct: 245 IDKSGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAKVVFDA 304 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GDSLA+ ++ V +LG I+ INL +PQ I++ G +++A LL + ++ Sbjct: 305 AKAGDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDEVSRHV 364 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQ 401 L +V S L + AIGA + + + +Q Sbjct: 365 LP--VKEPHIVISSLGEDAVAIGAATFLLKEYVESGKVQ 401 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 118/394 (29%), Positives = 201/394 (51%), Gaps = 8/394 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q G L+K +N + + I PISR +IA+++++ P +V+ I ++LI +GL+KE Sbjct: 2 QRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTL 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLE 126 S+GGR+ + T ++ IG+ G L DL+ +L L + T + Sbjct: 62 GRSSGGRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERFM 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 L ++ + + ++I I + + G+VD ++G P + + N + + LE+ F Sbjct: 122 EVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPILNLTNIPIKDVLEQEF 181 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 +T V +D R++AL E +FG D V + RG GAGI+ NG+++ G G GE+G Sbjct: 182 NLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGELG 241 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ ++ GE+C CGN GCL+TI + AI +R LK+ S T K + + A Sbjct: 242 HMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDS------LTAKDLFEMAEN 295 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 G E+ + G +G + I+L NP KIV+ G + + + +LPAI I +AL A Sbjct: 296 GCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQKALTA 355 Query: 367 FRTNLPVVRSELDHRSAI-GAFALVKRAMLNGIL 399 V ++L + + GA +L+ + + +L Sbjct: 356 EARQTEVTITKLGDEATLYGAVSLLLAELFDPVL 389 >UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T9_PAESJ Length = 387 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 105/393 (26%), Positives = 194/393 (49%), Gaps = 13/393 (3%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G++ L+K++N++ V + + P+SR QI+E + L A+V+ + + LI+ L+ Sbjct: 1 MKVTTTGDLTLIKKINTSIVLEAVLKQAPLSRAQISELTGLNKATVSNLVQDLIDSDLVV 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 E+ S+GGR+ + ++ + +A+G+ LG + L DL V+AE L + + Sbjct: 61 EIGPGESSGGRKPVMLLFNGKAGYAVGIDLGVNYIRGVLADLEGNVIAERKRSLKKHQLE 120 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 L+ I + I ++ I + +PG+VD D G I + P+++ + L + LE Sbjct: 121 FTLKELVQCIEELIGKAPASPYGIVGIGIGVPGIVD-DQGSILFAPNLEWRHVELQQMLE 179 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 E+F++ + ++ + A E +G + I V V G G GII N ++ G G G Sbjct: 180 EQFQLPVTIDNEANAGAQGEQKYGIGRGIAHQIYVSVGIGIGTGIILNKELYKGATGFSG 239 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E+GH+ +E G+ C CGN GC E A+ A+ ++ PL +++ + A Sbjct: 240 ELGHLSIEYNGKPCRCGNEGCWELYASENALLEQAA-----------PLGFDSLEDLLDA 288 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A G+ + +G ++G I+ +N+FNP ++I ++ A L A++S + + Sbjct: 289 AEAGNEEVRALFYKIGEYMGAGISNIVNVFNPDVVIIGNRMSRAKTWLEEAVQSSVTRRT 348 Query: 364 LKAFRTNLPVVRSELDHRSAI-GAFALVKRAML 395 L R L ++ +EL +SA+ GA Sbjct: 349 LPYHRERLRILFAELQDQSAVRGAAYYAISKFF 381 >UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP1_ALIAD Length = 409 Score = 424 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 110/393 (27%), Positives = 179/393 (45%), Gaps = 11/393 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + + L+K++N + V I + PISR QI+ ++ L A+V+ +T +LI GL+ EV Q Sbjct: 14 KTADQALMKEINKSIVLNRIRFHSPISRSQISSETGLNKATVSALTDELIRDGLVLEVGQ 73 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLE 126 S GRR I ++ IGV LG + + D +++ L+ PLP + + Sbjct: 74 GRSRVGRRPIMLLFNASAGSVIGVELGVEYVRVAITDFAARALSVREEPLPRNLGAEEVL 133 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 L +IAQ + +I I V +PGLVD G + PHI+ EN L +E F Sbjct: 134 ERLRASIAQALAEAPESRYGVIGIGVGVPGLVDFARGVVLRAPHIKWENIPLKAMMESWF 193 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V ++ + AL E +GA+ + + G G GI+ + G +G GE G Sbjct: 194 GKPVLVDNEANAGALGEKLYGAATHVSSLVYISAGTGIGTGIVIGDELIRGADGVAGEFG 253 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ ++ GE C CGN GC E A+ A+ L ++ + Sbjct: 254 HMSIDLHGETCPCGNVGCWELYASERALVAAYAKLTG---------EELDFDGVLARFRA 304 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 D A + + VGR+LG +N NP +++ + E +++ A++ I ++ L + Sbjct: 305 SDPAALQAFQTVGRYLGAGAVNLVNGLNPAMMILGNRLAEGGRMVTDAMQQAILSRCLVS 364 Query: 367 FRTNLPVVRSELDHRS-AIGAFALVKRAMLNGI 398 + V S L + AIG+ ALV G Sbjct: 365 SYAKVVVQVSALGRDACAIGSAALVLHDFFAGP 397 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 118/399 (29%), Positives = 201/399 (50%), Gaps = 10/399 (2%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + + L K +N + +I + GPISR I++++ L P +VT + +L+E L+ Sbjct: 1 MKKVYPVSYKLQKGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVL 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 E S+GGR + F+ + + + T L D KV + Y + +Q Sbjct: 61 EDIMGESSGGRPPQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVYDIERLEKQ 120 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 + + I + I S +E+ A+ V++ G V G + P+I N + + ++ Sbjct: 121 KILDLMFEVIDELIKSA---SQEVPALGVVVHGPVKAREGVSVFAPNIGWRNVPIKKLVQ 177 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 ERFK V +D+R++ L E Y+G+ + ++ + +++ G G+ II +G+IF G + + G Sbjct: 178 ERFKKPVCVENDVRAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDSAG 237 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTI 297 E GH V+ G RC+CGN+GCLE +++ AI + V+ LK G S V L+ T Sbjct: 238 EFGHTTVDIGGPRCNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKVTP 297 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 + +AA++GD L+ V++ R+LG IA IN NP+ IVI G I +A + I Sbjct: 298 DHVYRAADRGDELSLSVLQEAARYLGIGIANIINSINPKVIVIGGGIIKARLHIEEIINK 357 Query: 358 CINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAML 395 + +AL + +V SEL + GA +V +L Sbjct: 358 SVEERALTNAYQSCDIVFSELGDIGTLKGAGNIVMDEIL 396 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 98/389 (25%), Positives = 198/389 (50%), Gaps = 11/389 (2%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 ++GN +K LN +++LI + GPI+R ++A+ + + +++ + LI++G + E + Sbjct: 3 VKVGNSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIETE 62 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQTL 125 + S+GGR+ + + + I V + I LF+L KV+A+ +P+ + Sbjct: 63 KGYSSGGRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVAKTVFPINGPAQAKET 122 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 + + I + + + K +++ I V +PGL+D + G + + P++ +V+ E++ Sbjct: 123 ISQIFSEIEKILSEREIKPDKILGIGVAVPGLIDKEEGLLEFAPNLGWSKVPIVKYFEDK 182 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + V + ++ + A+ E F D +D + V ++ G G G+I NGR++ G GN GE Sbjct: 183 YGVPVVLENEANAAAVGEKEF-VYPDIKDMVYVSINEGIGCGLIFNGRLYRGAGGNAGEF 241 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GHI ++ G CHCGN GC ET+A+ I++ L + ++ I + A Sbjct: 242 GHIIIDSDGPLCHCGNSGCWETLASENHIQKEYQELTGE--------ENVEKNEIYRKAI 293 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +G+ A V++ ++G +A +N +P+ IV+ G I EAD +++ ++S + + L Sbjct: 294 EGEDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGGGIIEADTLIIDTVQSILKEKCLL 353 Query: 366 AFRTNLPVVRSELDHRSAI-GAFALVKRA 393 + + + L + + G + V Sbjct: 354 LSYDKVDIEFTRLKDLACLYGLASYVFNK 382 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 175/405 (43%), Positives = 264/405 (65%), Gaps = 2/405 (0%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 AQ G++D +KQ+N+ VY+LID GPISRI ++++S+LAPAS+TKITR+LIE L+ Sbjct: 30 KMYMAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKITRELIEAHLV 89 Query: 63 KEVDQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT 121 E Q + + GR A+ + + + +RLGR TI L +L +VL + + ER Sbjct: 90 HETTVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERD 149 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 Q + LL+ I +F +Y +L + +I++ LPGLV+ + G + MPH VEN L Sbjct: 150 QDDVLARLLHEIEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVENLALGPE 209 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 + + + F+ +D R+ ALAE FG SQ E+S+L+ +H G GAGII +GR+ GR+GN Sbjct: 210 IYKATGLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGN 269 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIKTI 300 +GE+GHIQ++P G+ CHCGN GCLET+A++ AI + V+ + G S + L+D TI++I Sbjct: 270 IGELGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESI 329 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 C+AA GD+LA +VIE +GR+LG IAI INLFNP+K++I G I +A +VL PAI CI Sbjct: 330 CEAAANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIE 389 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 Q+L + +L +V S ++ + AL+K+A+ +G+LL ++E Sbjct: 390 EQSLPVYHQDLELVESRFYKQATMPGAALIKQALYDGLLLMKVVE 434 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 420 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 195/397 (49%), Gaps = 9/397 (2%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 GN+ LVK+LN ++ +I ++ ISR Q+A+ + L PA++T I R L+ G + E Sbjct: 6 GNLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKGLGK 65 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 S GGRR + + + + +G + R+ T+ + +L +K L + Y + Q L Sbjct: 66 SNGGRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQYNIDMTDPQQGLSRL 125 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ--VENWGLVEALEERFK 187 + + + I + + ++ + V PGLVD + + P++ + + L+E Sbjct: 126 ADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRDIPIENWLQEMTG 185 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + FV ++ + A+AE+ FG ++ ++ + + G AGII NG + G G GEIGH Sbjct: 186 IKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRGYTGEIGH 245 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR------VPLDDCTIKTIC 301 + ++ G C+CGN GCLE++ A A+ ++ N L Q + + I+ I Sbjct: 246 LVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSLYNQKDPLKAIWLEKGEVKIEDIM 305 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 AN S A ++I G ++GK IA IN+FNP+ I I G + EA LL + + Sbjct: 306 ANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLDPLIESVQK 365 Query: 362 QALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNG 397 A + + S + + GA A+ RA+ G Sbjct: 366 HAFPELVREVRIELSSMRKDTGFYGACAIAIRALFEG 402 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 229/406 (56%), Positives = 292/406 (71%), Gaps = 3/406 (0%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MT G QI NVDL+KQ+NSAAVYRLID GPISR++IAE SQLAPASVTKITRQLIE G Sbjct: 22 MTGG---QIANVDLIKQVNSAAVYRLIDLQGPISRVKIAELSQLAPASVTKITRQLIEHG 78 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 LIKE QASTGGRRAIS+ T F + +LGR + L+DL K L + + E Sbjct: 79 LIKETSPQASTGGRRAISLTTIKHRFQFVSAKLGRGYLQLALYDLDGKELDQHITQVTEI 138 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 QQ + LL I FIDS Q + R LI+I++ +PGLV+P+SG + Y P Q+ N L + Sbjct: 139 EQQPVVDMLLREIGAFIDSQQDRSRNLISIALTMPGLVNPESGMVIYTPKYQIRNLALAK 198 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 LE F + C+VG+D RSLALAEH+FG S+DC DSILV VH+G G+GII+ G++F+G+N Sbjct: 199 LLENHFNLPCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLGQNR 258 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 NVGEIGHIQVEPLG+RCHCGNFGCLETIA+N AI +V L+ +G+ S + TI+ + Sbjct: 259 NVGEIGHIQVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSSLQEKHITIQEV 318 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 CKAA GD LA VIE VG HLG+ +AI +NLFNPQK++IAGEIT A+++L PAI C+ Sbjct: 319 CKAAMAGDELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIRRCVE 378 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 Q+L +F LP+V++ ++ +G FALVKRA+L G LLQ ++E Sbjct: 379 HQSLPSFHRGLPIVKARFQNQPTVGGFALVKRALLEGDLLQIIMEQ 424 >UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKJ0_BACSK Length = 391 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 104/387 (26%), Positives = 176/387 (45%), Gaps = 10/387 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + + +K +N + V+RLI ++ PISR IA++S L A+V+ + QLIE + E+ S Sbjct: 5 DHETMKDMNKSTVFRLIQRHAPISRADIAKRSGLNKATVSALVAQLIENQFVYEIGTGDS 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 +GGR+ + + R HAI V +G + + DLS K +A+ L + + Sbjct: 65 SGGRKPVLLYCNDRASHAISVDIGVNGLLGIITDLSGKTIAKREMALTSKEFNIVLANTE 124 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 I Q I + I+ +PG+VD G I P++ EN + ALE FK+ Sbjct: 125 AIIEQLIHEAPPSPYGICGITASVPGIVDS-KGNILLAPNLGWENVDIKTALEHTFKLPV 183 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V ++ + AL E +G + + V G G G I +G++F G NG GE GH+ + Sbjct: 184 VVINEANAGALGEKQYGVGKPYSAISYISVSIGIGTGQIIDGKLFTGANGFAGEFGHMSI 243 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 + G++C CGN GC E ++ A+ + + + + + AA G+ Sbjct: 244 DRHGKQCRCGNQGCWELYSSEKALLEIAAI--------NMNRRSISFEEVLAAAETGNQA 295 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 A + VG LG + I+ NP+ I+I + + IE + ++ Sbjct: 296 ALDAFATVGHSLGIGLVSMIHSMNPEAIIIGNRFAKLKPYIQIPIEETLAKHLPSYYQKA 355 Query: 371 LPVVRSELDHRS-AIGAFALVKRAMLN 396 + ++ SEL + +G L N Sbjct: 356 VKLLFSELGQEAPLLGGSLLATSQFFN 382 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 107/392 (27%), Positives = 190/392 (48%), Gaps = 10/392 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 G+ L+K++N V I Q P+SR I+ L A+V+ + +LI+ L+ E+ Sbjct: 1 MKITGDQQLIKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEI 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 S+GGR+ ++ +AIG+ + +D L DL VL E+ PL + + + + Sbjct: 61 GPGESSGGRKPTLLLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQEKLVPLSDFSPEHV 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 + I QF + ++ I + +PGLVD D ++ P++ L E L Sbjct: 121 LEQIRQTIRQFKEQLPESPYGIVGIGIGVPGLVD-DKSRVISAPNLDWNKVELYEPLASE 179 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 F + ++ + A+ E FGA ++ ++ I + + G G+GII G ++ G + GE+ Sbjct: 180 FGANLHIDNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYRGTSNFSGEV 239 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ + G C CGN GC ET+A+ A+ R L + ++ + + A+ Sbjct: 240 GHMTIAENGPLCRCGNRGCWETLASEKALLDRAAKLWGDKHP--------DLEEMIQLAH 291 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 GDS A E++ +G LG +A +N+ NP+ IVI ++ A ++ A+ I ++L Sbjct: 292 SGDSRAIELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDAMLRTIENRSLS 351 Query: 366 AFRTNLPVVRSELD-HRSAIGAFALVKRAMLN 396 R V + L +A+GA ++ A L+ Sbjct: 352 YHRKKSGVAFANLGIRSTALGAASMPITAFLS 383 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 108/401 (26%), Positives = 201/401 (50%), Gaps = 11/401 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N+ ++ N + V I + GPISR I++ ++L+P++V+ I LI G++KE Sbjct: 2 KPVNIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLINVGIVKETPA 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 + + GRR I + ++ IG+ + + T L LS K+L + L + Sbjct: 62 KVTKVGRRPIELTLNETGYYPIGIEIEKDKITGILMALSGKILKSKVINLNTTDVNEVLG 121 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF- 186 +++N I+ E+I + V +PG ++ G + P++ N + E L + Sbjct: 122 SVVNVYRSLIED--VNKEEIIGVGVAVPGTINRKEGVCIFSPNLGWRNINIKEYLGQYIK 179 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 F+ H I+++ E ++GA ++ I VRV G AG + +G+++ G N GE G Sbjct: 180 DYPLFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRGPNDRAGEFG 239 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT----IKTICK 302 H +E G++C CG++GCLET + + ++V +++ ++V +++ T + I + Sbjct: 240 HTVIERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKNAYTKVNIENKTKDEILDEIIE 299 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A GD + E +G +LG IA INLFNP+ I+IAG +++A ++LL + +N Sbjct: 300 AGKSGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLLEPVRRIVNLH 359 Query: 363 ALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGILLQH 402 A ++ ++L + IGA + V L + + Sbjct: 360 AFPPI---PEIMVTKLGALTGPIGAASEVIEETLLKKIFEK 397 >UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D498_GEOSW Length = 397 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 106/399 (26%), Positives = 199/399 (49%), Gaps = 8/399 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + GN+ LVK++N V +LI + ISR +IA+ + L A+V+ + +LI + E Sbjct: 1 MVRTGNIGLVKKINKQIVLKLIREKNNISRAEIAKITGLNKATVSALVDELISEHFVSES 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQT 124 STGGRR + + IG+ LG + L DL+++++ E+ P Q+T Sbjct: 61 GIGVSTGGRRPLMLRFNEAAGSLIGIELGVNYIYAVLTDLNAEIIWEKMCPFRANEKQET 120 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + ++ I + I ++ I + +PG+VD + G + + P++ ++ L L++ Sbjct: 121 IIEKMIAMIHEAIRQAPTTPYGIMGIGIGVPGIVDAEEGLVVFAPNLHWDHVSLSSILQK 180 Query: 185 RF-KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 ++ + ++ + AL E +FGA ++ + + V G GAG+I + +++ G +G G Sbjct: 181 QWPNYPIIIENEAKLAALGEKWFGAGKEFANFVYVSAGIGIGAGVIIHNQLYRGIDGIAG 240 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 EIGH ++ G RC CGN GC E A+ I++R+ + L+ +++ + Sbjct: 241 EIGHHVIDVHGFRCSCGNNGCWEMYASEKYIQRRL-----EQEHYHSMLEGFSVEKVRAL 295 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD ++++ VG +LG I I +NP+ +++ I +A K +L + + Sbjct: 296 AESGDKQMAQILAEVGHYLGIGILHIIYAYNPEAVIVGSTIGKAGKWVLEPAREEVEKRI 355 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQ 401 L ++ S+L +S AIGA A V ++ L+ Sbjct: 356 LVKNGNGPFIIPSQLLEKSCAIGAVASVLEKVVMPSELE 394 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 109/409 (26%), Positives = 188/409 (45%), Gaps = 13/409 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 N VK+ N V LI ++GPI R ++A+ + L P ++T I R+L+E GL+ E Sbjct: 5 GANSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIRELLELGLVHEDGYG 64 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S GGRR + + ++ + IGV + R + T+ + DL + YPL + Sbjct: 65 ESRGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARYPLDMSEPAAGLAS 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ--VENWGLVEALEERF 186 L + + ++ ++ R + + + PGLV +G + ++ ++ L E LE+ Sbjct: 125 LAELLRRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKLEDVL 184 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + F+ ++ + LAE +FG C D + V + G AG+I + RI G G GEIG Sbjct: 185 GLPVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYAGEIG 244 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ------SRVPLDDCTIKTI 300 HI ++ G +C+CGN GCLE + + A+ ++ L D + + Sbjct: 245 HIVIDESGPQCNCGNHGCLEALCSVPALIKQARRDLPGLADGDPLKARWQSSGDIELADL 304 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 A G + A+ ++ +G+ +A INL+NP+ + + G++ A P + + Sbjct: 305 LAVAQPG-TYANALLSRAVHWIGRAVAAVINLYNPEAVFLGGQLAGAMARFEPILRDAVA 363 Query: 361 TQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAML---NGILLQHLLE 405 A + + S L IGA AL + +L LL LE Sbjct: 364 AHAFPEIASATRIAFSALGEYPGVIGACALALKGLLHLPEARLLDAHLE 412 >UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID=A8FE34_BACP2 Length = 386 Score = 407 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 107/393 (27%), Positives = 190/393 (48%), Gaps = 12/393 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I + + VK++N + + I Q+ PISR +++E++ L ++V+ L++ L+ E+ Q Sbjct: 3 IADQNFVKKINQKLLLKEILQHAPISRAKLSERTGLNKSTVSSQVSTLMKEQLVYEIGQG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGRR + ++ R +IG+ +G L DL +L EE LP Sbjct: 63 ESSGGRRPVLLMFNKRAGCSIGIDVGVDYVNGILTDLEGSILHEEQINLPSSAPDVTIRI 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L I Q + LI I + +PGLVD D + + PH + +N L +AL++ F+V Sbjct: 123 LTELIQQLMSQIPSSPYGLIGIGLCIPGLVDADQQIV-FTPHSKWKNVDLKKALQDAFQV 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ ++ + A E FGA++ + I + G G GII N ++ G G GE+GH+ Sbjct: 182 PVFIENEANAGAYGEKIFGAAKHYDHLIYASIGTGIGIGIIINHHLYRGAYGFSGEMGHM 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 ++ G C CGN GC E A+ A+ Q + + + + + A D Sbjct: 242 TIDFNGPTCSCGNRGCWELYASEKALFQSLQ----------TNEKPISHQDVEQLATLND 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 + G +LG + ++ FNPQ I++ ++ E+ +L I+ ++++ F Sbjct: 292 MKTLNALRNFGFYLGVGLTNVLHTFNPQAIILRNKVIESQPTVLRVIQEEVSSRIDTQFS 351 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILL 400 +++ ++ S L H + +G +LV A L L Sbjct: 352 SHVELLPSSLGHNAPVLGMTSLVIEAFLQDATL 384 >UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus licheniformis RepID=Q65DK2_BACLD Length = 387 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 105/389 (26%), Positives = 182/389 (46%), Gaps = 12/389 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 + LVK++N A ++ I + GP+SR +++E + L A+V+ L+++ +I E Sbjct: 3 TADQALVKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSLLQKDIIYETGPG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGRR + + + +A+GV +G + + L DL ++ + L E Q E A Sbjct: 63 ESSGGRRPVMLKFNRKAGYAVGVDVGTNYIIVALTDLEGHLIEQFERTLDEEDIQATEEA 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L+ +D L I V +PGLVD + + + P+ + + E LEERF V Sbjct: 123 LIELTGLAVDKIPPSPFGLTGIGVCVPGLVDNER-HVVFTPNKPIHLIPIKEKLEERFGV 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ + A+ E +G E ++ V ++ G G GI+ NG++F G G GE GH+ Sbjct: 182 PILIENEANAGAVGEKEYGEGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEAGHM 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G C CGN GC E A+ A+ +T+ + A++GD Sbjct: 242 SIHFDGPLCRCGNRGCWELYASEKAVFSHYAA----------NSGAQLYETVKELADRGD 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 E E G H+G + + NP I++ I E+ ++ AI+ I +++ Sbjct: 292 PGMMETFERFGFHIGIGLLNILKTLNPDTIILRNTIVESYPSIVDAIKKTIASRSAAEAL 351 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLN 396 +N + S L + A+G +LV L Sbjct: 352 SNYHLKISTLGRTASALGMSSLVTERFLE 380 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 102/383 (26%), Positives = 182/383 (47%), Gaps = 8/383 (2%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +K++N + LI+ GPISR +IAE + L PA+V+ I + L++ L++E Q S GGR Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDLLKMDLVRETRQGESRGGR 60 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 + I + + IG+ G + L +L+ KV+ + + + Sbjct: 61 KPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIKKQVDSFKPEWFLKTTVTIFE 120 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 + + Y ++ + + + GLVDPD G Y PH EN + + L++ ++ + + Sbjct: 121 E-VTGYVENPDKVFGLGIGIHGLVDPDEGVSLYAPHFGWENIKIGKLLKQELQIPIMLDN 179 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 D+R +ALAE + + ++ I + G G+ I+ G + GR+ GE GH+ + G Sbjct: 180 DVRMMALAEKW----EGRDNFIFINTGPGIGSAIVIKGELLYGRDFGAGEFGHMTIVEDG 235 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CGN GC+E + + + + + L + + + + A + S A + Sbjct: 236 ALCSCGNRGCIEALVSVNNLVREYNDSLPEHISFHDIKREWNL--LIDLAREEKSRAYSI 293 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 IE G +LGK I +NL NP+ +VI G+ A ++ P I+ + ALK +L + Sbjct: 294 IEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIFPVIKEQVLETALKVPSRDLEIT 353 Query: 375 RSELDHR-SAIGAFALVKRAMLN 396 + + AIGA V + + Sbjct: 354 GTAFGEKVGAIGAGTRVLQEIFK 376 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 195/395 (49%), Gaps = 3/395 (0%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + GN L+K++N ++ LI +S+ +A+ + L+P + I L+++G I+ Sbjct: 1 MRMGKAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIR 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 E S GGRR I ++ +IGV + L D++ +V ++ R Sbjct: 61 EAGIGTSKGGRRPILYELTPGSYFSIGVDIDIDYIRFILMDITGQVEFKDRISCDFARAA 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + I++ I + + L+ + V +PG++D + +I + P++ E L + Sbjct: 121 SESIRLMEEKISEIIKIHNIEHDRLLGVGVSVPGMIDNLTHEIIFAPNLGWERVNLEHMM 180 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + +V ++ AL E++ G D D + + + G G+ I + G ++ G G+ Sbjct: 181 DRIGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRGCCGSA 240 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR-VPLDDCTIKTIC 301 GEIGHI V+ G RC CGN+GCLE + + ++ ++ L++QG + ++ T+ I Sbjct: 241 GEIGHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAITVDEIF 300 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + A +G+ A ++ +LG IA IN NP KIV+ E+ + + ++ ++S + Sbjct: 301 RLAREGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSEDIVDHLKSIASA 360 Query: 362 QALKAFRTNLPVVRSELDHR-SAIGAFALVKRAML 395 +ALK + + VV S++ SA+GA + + + Sbjct: 361 KALKYPASRVQVVVSKIGEDTSALGAAIIPVKKLF 395 >UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n=3 Tax=Bacillaceae RepID=Q8ELU2_OCEIH Length = 400 Score = 403 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 107/408 (26%), Positives = 180/408 (44%), Gaps = 35/408 (8%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + N +VKQ N + V+ I Q PISR IA+Q L ++V+ + +LI LI Sbjct: 1 MKINRTWNQYVVKQENKSLVFNTIRQNSPISRADIAQQLGLNKSTVSSLVSELINEELIG 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 EV S+GGRR + + ++IG+ LG + L DL +L +E T + Sbjct: 61 EVGPGESSGGRRPVMLFFNNTAGYSIGIDLGVNYILGVLTDLQGNILEQEQVTFDNLTYE 120 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 + L I + I + +I I V +PG+V+ + KI P++ N L E LE Sbjct: 121 EILVHLNEVIQKLITMTSKSPYGVIGIGVAVPGIVNKEE-KILLAPNLNWRNISLKEELE 179 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGII-------------- 229 +F + + ++ + A E FG ++ ++ I Sbjct: 180 NQFNIPVIIENEANAGAYGEVQFGIGKENKE--------------IVYVSVGVGIGVGLV 225 Query: 230 SNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR 289 N +++ G NG GE+GH+ ++ G +C CG+ GC E A+ A+ Q + Sbjct: 226 LNNQLYKGNNGFSGEMGHMTIDAHGAKCSCGSEGCWELYASEKALLQLAK----RNKIYT 281 Query: 290 VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 D + + + A DS+A E + ++L I IN FNP++++I ++ A K Sbjct: 282 TDPYDL-LDHMIQLAKNNDSVALEAFNEISKYLAIGINNIINSFNPEQVIIGNRMSAAKK 340 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 + + IN Q+L + +L + S L+ S A+G A L Sbjct: 341 WIEKPLLDSINNQSLWFSQKDLKIDFSSLNTHSNALGMAAFSSERFLK 388 >UniRef50_Q9K992 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9K992_BACHD Length = 386 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 101/392 (25%), Positives = 193/392 (49%), Gaps = 11/392 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + G+ +KQ+N V + I + P+SR Q++ + L +V+ + +LI L+ EV Sbjct: 1 MSVTGDQRFIKQMNKQIVLQTIRKEAPLSRAQVSLTTGLNKGTVSSLVAELIADNLVYEV 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 S+GGRR + ++ + + +AIG+ + + + L DL V+ + + L + + Sbjct: 61 GPGESSGGRRPVMLMFQNKAAYAIGINIAVNYLSGVLTDLVGNVIEKVEWSLHVKEFDHV 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 ++ I Q + + +I I V +PG+V+ + G + + P++ L + LEE Sbjct: 121 NQQMVQLIEQLMKAAPPSTYGIIGIGVAVPGIVN-EEGDVLFAPNLNWREIPLKKQLEEH 179 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 F++ V ++ + AL E FG ++ E+ I + G G+GII ++ G+ G GE+ Sbjct: 180 FQLPIAVENEANAGALGEKVFGKGKESENMIFFSIGIGIGSGIIFGNSLYRGKGGYSGEV 239 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ +E G C CGN GC E A+ A+ Q+ L + + T+ + + A Sbjct: 240 GHMSIETNGPLCTCGNKGCWELFASEKAVLQQGEALYE---------EVLTLDDLFEKAR 290 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 KG+ A ++ + +G +LG IA IN NP+ +V+ + + L +++ + +AL Sbjct: 291 KGEQTAIDLFQKIGVYLGTGIANMINALNPELVVVGNRMVKGRPWLEHSLKQTVADRALS 350 Query: 366 AFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 + V S+L+ ++G L+ + L Sbjct: 351 FHAEQVLVEFSDLNENGISLGVSYLLIDSFLE 382 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 176/395 (44%), Positives = 263/395 (66%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I +VD +KQLNSA +Y++I++Y PISR++IA S+LAPASVTKITRQL+++G+I E +Q Sbjct: 12 IASVDHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLLQQGIICETARQ 71 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 ASTGGR AIS+ T N H + +++G+ +++ ++L+++ L + + +Q L Sbjct: 72 ASTGGRCAISLAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQLTTKKIKIKSEDEQQLLAF 131 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L++ I FI Q+ + ++ AI++ L GL++P G + Y P+ + N+ L +E+ F++ Sbjct: 132 LISEIDNFIKKQQKNMGKISAIAISLSGLINPKKGVVLYSPYHPLVNFPLANKIEQHFQL 191 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+G+ RSLALAEHYFGAS++C DSIL+ +H G G+GII G+ +G+N N+GEIGHI Sbjct: 192 PTFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIEGKALLGQNFNIGEIGHI 251 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 Q P G +CHCGNFGCLET ++ I ++V +KQG +R+ LD I+ I +AA D Sbjct: 252 QANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIKQGSFTRLSLDSLNIEKIYQAAEDND 311 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 L +++E +LGK IAI INL NPQKI+IAG+I A LL IE CI Q L F+ Sbjct: 312 PLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTSLLSTIEQCIAHQVLPNFQ 371 Query: 369 TNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHL 403 + + S L+ + + AFAL+K+A+ G LLQ + Sbjct: 372 HKVQIETSLLEPDTTLAAFALIKQAIYEGDLLQQI 406 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 400 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 190/374 (50%), Gaps = 7/374 (1%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 + QLN +V +I PI++ QIA Q+ L+ +V KIT + LI+ + S GG+ Sbjct: 1 MAQLNRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFERNHLIRVNGKGESNGGK 60 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ-QTLEHALLNAI 133 R + ++ IGV +GR + DLS K++ +E Q L L+ I Sbjct: 61 RPELLEIIPDAYYIIGVDVGRSRIKAIIMDLSGKLIVKESIKTGRTVPSQQLIERLIYLI 120 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 Q + + + + + + +PGL+D ++G + + P EN LV+ +E+ F + Sbjct: 121 HQVVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFHWENVELVKPIEDHFPFYTILE 180 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 + R++A+ EH+FGA + I + + G G+ I+ NG + G G+ GEIGHI +E Sbjct: 181 NSNRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHITLEKD 240 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKG 307 G C CGN GCLE +A+ A+ + L++QG R+ ++ K I AA +G Sbjct: 241 GPLCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDAAKEG 300 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D+ A+ +++ ++G +A INL +P +++AG +T A L+ ++ I + +K Sbjct: 301 DAAAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKRVIKARQMKFA 360 Query: 368 RTNLPVVRSELDHR 381 + + S+L + Sbjct: 361 GRKVKIRISKLGND 374 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 400 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 100/402 (24%), Positives = 188/402 (46%), Gaps = 8/402 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 ++ GN+ L+++LN + + I + GPISR IA++ ++P +VT +LIE ++ E Sbjct: 1 MSRTGNLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSELIEGKIVYED 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 S GGR+ + + IGV + I +L KV + + + Sbjct: 61 GVGNSNGGRKPVLLRFNPDTHSIIGVSITNSKIKIAEMNLEGKVKKKSVEITNNEQGEDI 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 ++ + FI + + L +S+I PG+V+ + G I Y H+ + N L + +E Sbjct: 121 IKLVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNSHLGLYNIPLKKMVEST 180 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + F+ +D+ + AE YFG+ + + + G G+GI+ N I+ G G+ GEI Sbjct: 181 IGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAGEI 240 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAI-EQRVLNLLKQGYQSRV------PLDDCTIK 298 GH V P G +C CGN GC+E +I + V ++ +G + + T Sbjct: 241 GHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGNDFTKITPD 300 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 A + D L E+++ + +L TI AI+ +P+ I+++G I ++V + ++ Sbjct: 301 MFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSGAIIHGNQVFIDQLQEE 360 Query: 359 INTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNGIL 399 + + L R ++ + L +GA +++ + L Sbjct: 361 VKKRLLPIIREDVNFQSTSLGPDFDLLGAASVILQGRFRFQL 402 >UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788127 Length = 390 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 106/393 (26%), Positives = 185/393 (47%), Gaps = 13/393 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 G+ LVK++N++ + I Q+ P+SR ++++ + L A+V+ + ++L L++E+ Sbjct: 5 TGDQALVKKINTSIILDTIRQHAPVSRAKVSKLTGLNKATVSNLVQELCSNHLVQEIGPG 64 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S+GGR+ ++ + +AIGV L T L DL ++LAEE L +++ Sbjct: 65 ESSGGRKPQLLLFNGQAGYAIGVELRVKQITAVLTDLEGRILAEEDTALEAHGVESVTRL 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 ++ I + +I I V +PG+VD D G + + P++ + L E LE + Sbjct: 125 MVGMIHGLMRQAPPSPYGIIGIGVGVPGMVDGD-GTVLFAPNLGWDMVPLQEQLELELGL 183 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ + A E FGA +D + + G G+GII NG ++ G G GE GH+ Sbjct: 184 PVTIDNEANAGAQGELRFGAGRDARHLLYISAGSGIGSGIIINGELYKGARGYAGESGHM 243 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 +E G C CGN GC E A+ G + +P + + A G Sbjct: 244 SIEAEGRECSCGNRGCWELYAS---------EKSYDGKDAVLPSRRTS--ELVHHAELGH 292 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 E +GR+LG I +N FNPQ ++I G +++A + ++ + + L R Sbjct: 293 KDTIRHFEELGRYLGIGITNLVNGFNPQSVIIGGPLSDARAWIEETLQQVVAQRTLPYHR 352 Query: 369 TNLPVVRSELDHRSA-IGAFALVKRAMLNGILL 400 + + +EL RS IGA L + + Sbjct: 353 ERMEIRFAELGSRSTMIGAAYSAISQFLGPVRV 385 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 397 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 106/395 (26%), Positives = 198/395 (50%), Gaps = 5/395 (1%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 G+ LV++LN + V ++ ++ P+SR +A + L A+V+ + +L GL+ EV Sbjct: 5 KHTGDQALVRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLVWEVG 64 Query: 67 QQAST-GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQT 124 +A+ GR + + IG+ +G + + D SS+++ + ++ + Sbjct: 65 IEATDDVGRPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGKSPEE 124 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + + I + ++ ++ +++ + V +PGLVD G + + P++ + + EE Sbjct: 125 VLGLAADLIQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNLGWRDVPVRSMFEE 184 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 RF T +V ++ AL E YFG ++ + + G G GI+ G+I G G GE Sbjct: 185 RFPFTVYVENEANMAALGESYFGVARGYNCVLYISAGVGVGGGIVLGGQIMRGAMGFSGE 244 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ--SRVPLDDCTIKTICK 302 +GH+ + G C CGN GC ET+A+ +A+ +R+L L++ + S D T+ T+ + Sbjct: 245 VGHMTMVEDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTVPTVLE 304 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA GD LA V+ V R +G IA +N+ NP+ +V+ G ++ ++LP I + + Sbjct: 305 AARAGDRLARGVLNEVARDVGLGIANLVNVLNPEIVVLGGMLSMGGDLMLPTIRETLEHR 364 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 L+ L + + L S +G A V +L+ Sbjct: 365 GLRWLVQPLRLELAALGRESCVLGGIATVYDRVLS 399 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 178/388 (45%), Gaps = 11/388 (2%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 N ++ N A V RLI + PISR+++A+Q++L +V+ I +LI L+ E + Sbjct: 6 PRNSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLVMERELG 65 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 S GGR+ I + + + IG+ H + DLS + E T + L A Sbjct: 66 VSNGGRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGNTIHEVETMGKFDTNEELMEA 125 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 ++ Q ID+ ++ + I + + G+V+P++G I + P + + L E LE+RF Sbjct: 126 VVQLCQQLIDATD-QVGTIHGIGISVHGMVNPETGVILFAPRFHLHDVALKEHLEQRFAY 184 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 F+ +D+R+LA E FG + + G G + +G++ G N GE+GH+ Sbjct: 185 PVFIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENHITGEVGHM 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 +++ G C CGN GCLE +A A+ + V T+ + + D Sbjct: 245 RLDLDGPICSCGNRGCLEALAGEKALLRDFEA---------VDPQVKTLTELRRRLTDQD 295 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A+ G ++G + I+L NP++I++ G + E ++ I+ + AL Sbjct: 296 PHATAAYHRAGEYIGIGVLNTIHLINPKRILLGGPMFELAPSIVDQIKERVEHTALTTAS 355 Query: 369 TNLPVV-RSELDHRSAIGAFALVKRAML 395 V + + A+ A AL ++ Sbjct: 356 RETDVKMVPWSEKQGALSAAALATNSIF 383 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 114/402 (28%), Positives = 200/402 (49%), Gaps = 9/402 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + G++ L+++LN + I Q+GPISR IA++ ++P +VT +LI G++ E Sbjct: 1 MRRTGDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAED 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQT 124 S GGR+ I + IGV + TI +L + ++ YP+ Sbjct: 61 GTGESKGGRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEAATKQKKIYPVKAGLVSDL 120 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + +L++I F+ S + + IS+I PG+VD SG I + +++ + L + EE Sbjct: 121 IIQYVLDSIGDFLQSVD-DVSRCLGISIIAPGIVDAASGVIRFNSKLRLHDVPLKDMAEE 179 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 RF + ++ +D ++ALAE FG + ++ + V V G G+G++ NG IF G G GE Sbjct: 180 RFGLNTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGSRGGAGE 239 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIK 298 GH V+ G RC CGN GCLE A AI +L+ + +G ++ V + T Sbjct: 240 FGHTTVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADGDMTRITFD 299 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 +A ++GD + ++++ + ++ I +NLFNP I++ GE+ ++VL I+ Sbjct: 300 VFRQALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGGEMIRDNQVLFERIQKQ 359 Query: 359 INTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNGIL 399 + QA+ L + L A A++ + + + L Sbjct: 360 VMAQAMGTMVEGLEFRPTVLGADFEVKAAAAVLLQDVFHFSL 401 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 393 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 115/403 (28%), Positives = 197/403 (48%), Gaps = 8/403 (1%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M G + ++ NS+ + +I + ISR +IA +++L+P++V+ I L G Sbjct: 1 MRVGTAVTTVDAAGMRAQNSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 L++ + S GGRR I F IGV +G T L DL +V A H R Sbjct: 61 LVRSIGAGVSRGGRRPTLIGFCDDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVR 120 Query: 121 -TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDS-GKIHYMPHIQVENWGL 178 + + + + +D+ + R + + + +P V P + GK+ + ++ + Sbjct: 121 EDPKGTLQKVRELVQEVLDAERVPRRSVAGMGIAVPSPVHPSAPGKLSPLLVPAWRDYDV 180 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 E+L F + FV +D AL+E Y+GA + ED +++ G G+G I +G ++ G Sbjct: 181 QESLRSAFGLPVFVDNDANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGA 240 Query: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK 298 G GEI H+ V+ G +C CG GCL T+ +AA+ +R L+ + T++ Sbjct: 241 GGTAGEISHMAVDSSGPQCVCGLRGCLVTLIGSAALLERARELMGRK-----DKRALTVR 295 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + + A G+ A +VI+ +G +LG +A +NL NP +V+ GEI+ +LL + + Sbjct: 296 ELVEGARAGEPAARQVIDGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRAS 355 Query: 359 INTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGILL 400 + +AL +V S L R+ A+GA LV +A L L Sbjct: 356 VRKRALSTSMAETRIVTSALGDRAIAVGAATLVLQAALRDRTL 398 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 7/398 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + GN DL+K +N V LI + G I+R +IA++ +++T I L + G+I E + Sbjct: 5 RKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILEGAE 64 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLE 126 +STGGRRA + + V++ L DL+++++ P E+ + Sbjct: 65 TSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIMENTSIPFSSEKKPEEAI 124 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + + + + R + L+ + + + GLV+ G + + EN L L F Sbjct: 125 ELIAKNVKKMCE--NRDMNHLLGVGIAISGLVNRRKGTVIRSTMLGWENVALEAMLHAYF 182 Query: 187 -KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + +V +I LAE + G + + V V G G ++ N +I+ G G GE Sbjct: 183 PDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQGGAGEF 242 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH ++P G +CHCG GCLE A+ R L + S + D + K+A Sbjct: 243 GHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSELK--DFHFDKVAKSAR 300 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 GD +A+E++ +G +LG I IN FNP+K++I GE + L I+ + Sbjct: 301 AGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKIDEIASQNFFS 360 Query: 366 AFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGILLQH 402 + + L+ + + GA LV + + + Sbjct: 361 GAGFETEITTTSLEDPAWLQGAALLVIHQLFQVPIYEE 398 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 110/405 (27%), Positives = 202/405 (49%), Gaps = 9/405 (2%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + GN L++ LN + V I GPISRI++A++++L+P++V ++LI G + Sbjct: 1 MNNMKKGNHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVS 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 E+ +S+GGR+ I + N + V + + +L +KV A+E +P+ + Sbjct: 61 EIGTGSSSGGRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAKETHPIAGLQGE 120 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 + LL + F+ Q L + IS+ +PG+V G +HY +++ N L E Sbjct: 121 AVIERLLQLMDDFMAG-QEDLERCVGISINVPGIVSDSHGVVHYNTKLRMTNVPLKRIFE 179 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 +R+ + +V +D+ S+ LAE FG + I + + G G+GI+ N + G++G G Sbjct: 180 DRYGMRTWVENDMNSVVLAERRFGD-YAFANLIYISIGDGLGSGILINDHLLRGKHGGAG 238 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTI 297 E GH V G RC CGN GCL++ + A+ R++ + G + + Sbjct: 239 EFGHTSVNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKIVP 298 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 +A KGD LA ++ E V HLG I +N+FNP+ +++ G++ + LL + Sbjct: 299 SVFKEALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALILGGDLAHGNPELLDMVSV 358 Query: 358 CINTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLNGILLQ 401 I+ A+ + ++ + L +GA +++ + +L L++ Sbjct: 359 YIDRHAMPILKDDMVFGLASLGEEDKLMGAASVLLQDLLGFSLME 403 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 175/394 (44%), Gaps = 15/394 (3%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 G+ +K++N + + + I + G +SR +++ + L A+V+ L++ L+ E + + Sbjct: 3 TGDASYIKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEIE 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 + GR+ I + +AIG+ L + + DL ++ + L + Sbjct: 63 YNQVGRKPIMLSINAEAGYAIGIDLEYDQISFAISDLKGSLVLTDTIKLQSHAYADILSL 122 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L I + + + +I I + + GLV D IHY+P + L LE + Sbjct: 123 LTGQIKHYQERFAASRYGIIGIVIAIHGLVSTDE-VIHYIPSFGWHDVPLKSDLENALGL 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 + ++ A AE F + +D I V ++ G G G++ N F G++G GEIGH+ Sbjct: 182 QVKLENNANLSAFAERVF-FHHETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGEIGHM 240 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 V P G C+CGN GC E A+ ++ Q + + P D T I + Sbjct: 241 IVVPGGLPCNCGNKGCWEKYASETSVFQLLRA--------KKPDADITYAQIGNWIEAKE 292 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A+E+IE +L + IN++NP+ +V+ E+ L IES +N++ Sbjct: 293 PDATELIEQFIYYLSIGLNNIINIYNPEVVVLDSELLRIYPDSLQHIESNLNSRV----S 348 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQ 401 + S + +S +GA A+ + L +L Sbjct: 349 HYREIKISTIGKKSCVLGACAIAIQNFLRVPVLN 382 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 102/397 (25%), Positives = 188/397 (47%), Gaps = 7/397 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 A N +K N V I + G ++ +A + L ++ KI +L E LI++ Sbjct: 1 MADQNNQVQLKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLIRDG 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQQ 123 ++ GR+A+S V + IG+ + + I L +L ++LA E Y + + Q Sbjct: 61 QMESGGMGRKAVSYVINENYRYTIGIHINKFITGIALLNLRGQILAIERYSMDKEFENQN 120 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW-GLVEAL 182 L A+ I+ K +++ I V PG +D +SG I P++ + ++ L E L Sbjct: 121 DFVTMLAEAVELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPLKETL 180 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E R F+ D +A AE+++ ++DC + V V G G+G+I +G++ +G N Sbjct: 181 EGRTGFPVFLNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGANCIA 240 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV--PLDDCTIKTI 300 GE GHI ++ G C+CGN GCLE +++ A+ + + L+ + + TI+ + Sbjct: 241 GEFGHITIDINGPLCNCGNRGCLEAMSSGIAVLRMLGEQLENQKDHPLYHKRNALTIEDV 300 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 + +K D L ++ ++G ++ IN F+P+ I++ G + + + ++ N Sbjct: 301 FEMTDKKDLLTISILNRSAFYVGVAVSNLINTFDPEMIILGGILIQKYPMYFNIVQDVAN 360 Query: 361 TQALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLN 396 + +K + N S L + IGA +V N Sbjct: 361 QRKVKGAKENYM-AVSVLGENAGVIGAGEIVTDHFFN 396 >UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterales RepID=B0K1L9_THEPX Length = 400 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 111/393 (28%), Positives = 188/393 (47%), Gaps = 6/393 (1%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 + LVKQ+N + V I + G ISR IA + L ++V+ + +LI G ++E Sbjct: 3 TADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGPG 62 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEH 127 AS GGR+ I + IG+ L + I L DL + V+ E+ + +QQ + Sbjct: 63 ASKGGRKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAIIE 122 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L+ I + I + +R ++ I + +PG+VD G I P+++ ++ L E +E +FK Sbjct: 123 RLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSILMAPNLKWQDVPLKEIIENKFK 182 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + + ++ A+ E +FG + + V G G GII NG ++ G G GE+GH Sbjct: 183 IKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEMGH 242 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS----RVPLDDCTIKTICKA 303 + + +C CGN GC E A+ A+ + L G + + + I Sbjct: 243 MTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDIINY 302 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A KG +A E ++ +GR LG I IN FNP+ ++I ++ A ++L + + + Sbjct: 303 AQKGSEIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEKKC 362 Query: 364 LKAFRTNLPVVRSELD-HRSAIGAFALVKRAML 395 L + + S+L H AIGA +LV + Sbjct: 363 LVYRYYKVKIKTSKLQFHAGAIGAVSLVISELF 395 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 106/396 (26%), Positives = 185/396 (46%), Gaps = 11/396 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-QQA 69 N VK LN + L+ YG +++ +IA + L +V +T +L++ LI E Sbjct: 8 NNRHVKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIAEAGFYDE 67 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHA 128 S+ GR+ + + + + +GV + + +L K + +++ P + ++ + Sbjct: 68 SSRGRKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNANRGSVVNV 127 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFK 187 +++ I +D K +I I V PG +DP GKI P++ + L +EE + Sbjct: 128 IISTIQAVLDESGLK-SRIIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKGLIEENTE 186 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + + D +AL E ++G + + V G G+G+I N +I+ G GEIGH Sbjct: 187 LPTQIEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPFGAGEIGH 246 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTIC 301 ++ G RC+CGN GCLE IA+ AI +RV L++G S + I + Sbjct: 247 CTIDIDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHGLDITDVI 306 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 A GD LA+ ++ R++G ++A INL P+ I+I G + + Sbjct: 307 TAGVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYFTYVRETSYN 366 Query: 362 QALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLN 396 ++L +F + + SEL + IGA +V LN Sbjct: 367 RSLSSFHDKIMLQPSELGEYAGVIGAGTIVFEKYLN 402 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 175/382 (45%), Gaps = 20/382 (5%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 ++ L+++LN A V +LI + G ISR IA+ ++L+ ++V+ I LI+ L+ E Sbjct: 8 TADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIG 67 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL-EH 127 S GGRR I + + + IG+ + R+ + + DL++++ + T+ Sbjct: 68 TSKGGRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMP 127 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERF 186 + I+ + + AI V +PG +D +G+ P + +N + E L + F Sbjct: 128 LIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELSQTF 187 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHR-GTGAGIISNGRIFIGRNGNVGEI 245 ++ + +D A+AE+ +GA Q ++ + + + G GAG+I + +F G G+ GE+ Sbjct: 188 RLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSAGEV 247 Query: 246 GHIQVEPL-----GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 GH + G N G LE +A+ + + ++ D + T+ Sbjct: 248 GHTTLSVENDESFGPI----NAGSLEALASQITVLRLAREQ-------KLISADDDVHTL 296 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 + A ++ +LG IA IN+FNP ++VI G I E +L+ I + + Sbjct: 297 VRKAESS-PEIQAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATVA 355 Query: 361 TQALKAFRTNLPVVRSELDHRS 382 +AL N +V L Sbjct: 356 RRALSIAVNNTSIVPGALGRNV 377 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 381 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 100/389 (25%), Positives = 185/389 (47%), Gaps = 15/389 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 G+ +++ N A + + Q G ++++++A + L+PA+V+ I ++L G++ Sbjct: 2 TPGSQTSLREANRARIVSAVQQRGSLTQVELAGVTGLSPATVSNIVKELTGAGVLHTSPT 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLE 126 S GRRA + G+ G + + D++ +++A++ PLP + Sbjct: 62 --SRSGRRAQQVTLARNLGLVGGIHFGSRSLRVAVADVAHRIVADQRMPLPPDHRADAGL 119 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEER 185 + + ++S L+E++A+ V +P VD +G+I + + + + E LE R Sbjct: 120 ERAALLLTEMVESVDSSLQEVLAVGVGVPAPVDVRTGQISTIGVLRGWDGICVPEVLERR 179 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + +V ++ ALAE FGA++ + + +R+ G G GI+ NG +F GR+G GEI Sbjct: 180 LGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLNGEVFHGRSGTAGEI 239 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ ++ G C CGN GCLET + + T+ + A Sbjct: 240 GHVTIDDNGPICRCGNRGCLETFVGAPVLLSMLTA----------SHGHLTLPDVIARAQ 289 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +GD VI GR+LG A NLF+P+ +V+ G + EA +L+ + + + + + Sbjct: 290 QGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPILMDPLRTVLAQRTVP 349 Query: 366 AFRTNLPVVRSELDHRS-AIGAFALVKRA 393 + + VV SEL + GA + Sbjct: 350 STAGPVEVVASELGSAAEVRGALVVALDH 378 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 104/391 (26%), Positives = 177/391 (45%), Gaps = 15/391 (3%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 ++ LI +R ++A + L A+V++ L+E GL+ E + STGGR + + Sbjct: 10 GQIFGLIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLVVETKEGVSTGGRPPMVLG 69 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDS 139 + LG + + DL + L E L + + + + + ++ Sbjct: 70 FNKDAGVVLAADLGATHCRLAVADLGGRPLVELPADLDIAQGPDAVLGWVQDRFEELLEE 129 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERF-KVTCFVGHDIR 197 R E+ I V +PG VD G+ P + + + E ERF V V +D+ Sbjct: 130 AGRSREEVWGIGVGVPGPVDFARGQAVSPPIMPGWDRVPIPERFRERFGGVPVLVDNDVN 189 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE-R 256 +AL EH D E + V+V G G GI++ GRI G G G+IGHI++ E Sbjct: 190 IMALGEHRV-NWSDVEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEETV 248 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIE 316 C CGN C+E +A A+ +++ L S + + G+ A+ ++ Sbjct: 249 CRCGNVACVEAVAGGWALAKQLSGLGYPATGS---------RDVVGLVRAGNPAAARLVR 299 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 G +G+ +A +N FNP I+I G++ A + L I S + ++L +L +V S Sbjct: 300 TAGELIGEVLASLVNFFNPAVIIIGGDLAHAHEQLFAGIRSVVYQRSLPLATRHLQIVPS 359 Query: 377 ELDHRSAI-GAFALVKRAMLNGILLQHLLEN 406 ELD R+ I GA A+V +L ++ + + Sbjct: 360 ELDDRAGIHGAAAMVIEHVLRPETIEEMAQE 390 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 380 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 104/399 (26%), Positives = 174/399 (43%), Gaps = 8/399 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + NS V R+I + ISR IA ++ L +V+ + +LIE+GLI+E Sbjct: 6 AKATRQHTRNHNSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLIEETGA 65 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S+GGR I + + + L D+ + PL + L Sbjct: 66 GQSSGGRLPILLRVVHESHCVAALSFEDTQIVGALVDMRGGIQRRVSVPLQGYRPEDLPG 125 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L + ++ I + +PG+VDP G + + + + L + L+++++ Sbjct: 126 YLTQLLDDLTAD---PAPHILGIGLSMPGIVDPVRGMVRRAVNFGLVDTPLRQLLQDQYR 182 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + ++ + R ALAE+ FG + +++ + G GAGI+ NG +F G GEIGH Sbjct: 183 LPVYLDNAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGFGAGEIGH 242 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQG----YQSRVPLDDCTIKTICKA 303 + V G RC+CGN GCLET+A+ AI + L T C+A Sbjct: 243 VVVADNGIRCNCGNVGCLETVASVTAIVRAARRLATDPSSRLRSLASAAAAIDFNTFCRA 302 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 +GD + ++ VGR+LG +A + L N ++IV+ G I LL A+++ + A Sbjct: 303 LEEGDDGVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAVKTSLARHA 362 Query: 364 LKAFRTNLPV-VRSELDHRSAIGAFALVKRAMLNGILLQ 401 L V + E +G A+V + L Sbjct: 363 LAPLAAMTRVDLVPERHDAVLLGIAAMVLDHEFGLLRLD 401 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 111/395 (28%), Positives = 199/395 (50%), Gaps = 6/395 (1%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 GN L+KQ+N V + I ISR +I++ L A+V+ +T +LI+ G + E Sbjct: 2 GNHTLLKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYGK 61 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHA 128 S GGRR + + IG+ LG I L + +V+ EE+ + ++ L Sbjct: 62 SKGGRRPVLLQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFEEYANMKIGEDKEKLLRL 121 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L + I + + + + ++ I + +PG+++ +SG + P+++ +N L ++++F + Sbjct: 122 LFDLIEKSVKKAPQTPKGILGIGIGVPGIIEKESGTVLLAPNLKWQNVPLRSIVQQKFNL 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ ++ + AL E +FG D I + V G GAGII + ++F G G GE+GH Sbjct: 182 PVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVGHT 241 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ----SRVPLDDCTIKTICKAA 304 + + C CGN GCLE A+ A+ + L+KQG + S +D+ T I +AA Sbjct: 242 TINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWENVDEITPSRIIQAA 301 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +G + I V +G +A +N+FNP+ ++I + + ++ L + IN ++ Sbjct: 302 KEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQRSF 361 Query: 365 KAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGI 398 A NL + S+L R+ +G A+V ML+ Sbjct: 362 IAQFYNLKIEVSKLKDRAVVLGCIAMVISDMLSFP 396 >UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D7F4_PAESJ Length = 396 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 106/402 (26%), Positives = 185/402 (46%), Gaps = 17/402 (4%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M + N++ V+++N + V RL+ + SR ++ + S L +++T I +LI G Sbjct: 1 MIVTKTKRGTNLEDVQEMNRSLVIRLMRRREVCSRAELTQDSGLNQSTITNIINELISWG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-E 119 ++ E GRR+I I + IG+RL R T+ L+DL + P+ Sbjct: 61 IVVETGVIEGKKGRRSIGIKLNCEPYKIIGIRLARKSITVALYDLGGSEYKRQQIPINMA 120 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGL 178 + + I + S +IAI V+ PG + D G+I M + E + Sbjct: 121 DGSTNAFNRMKELIRDMMQSNAV--GNVIAIGVVTPGPLLRDEGRIGLMTYFPGWEKINI 178 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFG-ASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 E L + F++ ++ HD ++ ALA +FG Q+ I V +G GAGI+ G++F G Sbjct: 179 QEELMQEFELPVYMEHDAKAGALAHWWFGTPLQEQGVMIYVAAGQGVGAGIVIEGKVFRG 238 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 G GEIGH+ ++ G++C CGN GCLE + +A+ Q + L + Sbjct: 239 SLGMAGEIGHMSIDYKGQQCECGNRGCLELYCSTSALLQTLKKEHASLKSIWQELKEV-- 296 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 G++ E + +LG + IN FNP +I++ E+ EA +LL ++S Sbjct: 297 -------KSGET--REAVRQAAWYLGFGLVNIINTFNPDRIILGDEMAEAGDLLLDTVKS 347 Query: 358 CINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGI 398 I L + L + + D + +G+ + ++L+ Sbjct: 348 VIKEHVLPDVYSQLTIELASDDMDTMLVGSAIVAIESILDNP 389 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 182/395 (46%), Gaps = 9/395 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + ++++N A V +LI SRI I++ + L A+V+ I +LI L+ EV +S Sbjct: 6 DASAMRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEVGYGSS 65 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL----E 126 +GGR+ I + +AIGV + T + ++ + + + L + Sbjct: 66 SGGRKPILLRFNANAAYAIGVDVQLSHMTTVVCNIRGEPVYRQVRTLGLSEAPDVRAVLL 125 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 A+ + + I + L+ + PG+VD G ++Y+P + V W ++ L Sbjct: 126 EAIEEELRKAIAAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSLFVGEWEILADLGRSV 185 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + F+ +D A E+ A + ++ + V + G GAGI+ G+++ GR+G GE G Sbjct: 186 DIPLFLDNDANCGAWNEYMAQAMK-LKNLVFVNMGLGIGAGIVIEGKLYRGRDGIAGEAG 244 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ + P+G C CG +GC E A+ + + + S + L D ++ + A Sbjct: 245 HMTINPMGSACMCGGYGCWEEYASERGLMRYLREAGAD--LSALSLRDSLLEQALEQAQN 302 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 + +G++LG IA +NL NP ++++ G + A +LP +E I +AL Sbjct: 303 DNRACIRAFHSLGQYLGLGIANLLNLLNPDEVILGGSVARAATFVLPEVERVIKHRALLQ 362 Query: 367 FRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQ 401 + V S+ H AIGA L L ++ Sbjct: 363 NKQIPVRVGSQ--HAVAIGASLLAVHETLFASAME 395 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 97/391 (24%), Positives = 186/391 (47%), Gaps = 7/391 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 +++ + N ++ I + I+R IA++ L+ +V IT LI++G+I + + S Sbjct: 8 DLNSITSNNRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIYVIGKGKS 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 +GG+R + F +GV +GR + + + V+ + P L + + Sbjct: 68 SGGKRPELLAVVPDRFFFVGVDVGRTSVRVVVMNNCRDVVYKVSKPTESVEPDELINQIT 127 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 + I+ + L ++ I V +PGL++ +G++ + P+ N L + L++ Sbjct: 128 EMTMESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNFGWNNIALQDELKKHLPFNV 187 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V + R+L + E + V + G G+ I+ ++ G +G GEIGHI V Sbjct: 188 LVENANRALVIGEIKNTQPNPTSCIVGVNLGYGIGSAIVLPNGLYYGVSGTSGEIGHIIV 247 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAA 304 E G C CGN+GC+E+IA+ AI + + QS V L K + AA Sbjct: 248 ENHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKIDAKMVFDAA 307 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +GD LA ++E ++GK +AI IN+ +P++I++ G +T + + I+ ++ + Sbjct: 308 KEGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMIKKAVSKYQM 367 Query: 365 KAFRTNLPVVRSELD-HRSAIGAFALVKRAM 394 + N+ +V + + +AIG +V + Sbjct: 368 RYAGGNVKIVVGKSGLYATAIGGAWIVANNI 398 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 98/377 (25%), Positives = 173/377 (45%), Gaps = 13/377 (3%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 G + + + K N V++ I G ISR+ +A + L P +V+ L+E L++E Sbjct: 3 GLPKKASREQSKLHNYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELVQE 62 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 V S GG+ A + H IG+ + H+ T+ +L + + L Sbjct: 63 VGLAPSGGGKPATLLSVLDDGRHLIGLDVAGHELRGTIINLRGAIRQRQTLALNGGN--- 119 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + L I Q + + ++ I + PG+++ +G + ++ N L + L + Sbjct: 120 VLEQLYQLIDQLLAN---THSPVLGIGIGAPGVINTTAGVVQQAVNLGWHNLALRDLLGK 176 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 R+ + ++ +D A+AEH FG+ ++ + +++ V RG GAGI NGRI G GE Sbjct: 177 RYGLPVYLANDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAWGAGE 236 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IGH+ V+P G C CG++GCLET+A+ +A+ ++ ++ TI + A Sbjct: 237 IGHVVVQPHGTLCRCGHYGCLETVASTSALLTKL-------DATQPQSQPWTIAEVQAAL 289 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 D +++ +LG IA + L N Q I++AG + + LL + + AL Sbjct: 290 AANDPTVRALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRRSLAQHAL 349 Query: 365 KAFRTNLPVVRSELDHR 381 + V S L Sbjct: 350 QTLVAATDVQVSTLGSD 366 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 185/401 (46%), Gaps = 12/401 (2%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV-- 65 Q G+ +L++ +N V I ++ P+SR I +++ L+ +V+ + L++ GLI E Sbjct: 2 QTGDTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESD 61 Query: 66 -DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT--Q 122 + T GR + + +G +L H + + +L + LA PL Sbjct: 62 ETTNSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVP 121 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVEN--WGLVE 180 + L + + KL ++ + + LPG +D +G H+ P + E L + Sbjct: 122 DAIVALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVALAD 181 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 + R + + +D L LAE +FG Q+ ++ ++V + G G G+ +G ++ G++G Sbjct: 182 MVRRRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQHG 241 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK-- 298 E GH +++ G RC CG +GC+E A+ AI + +++ D + Sbjct: 242 MGTEFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAHEGADDTAEAETR 301 Query: 299 --TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 T+ + A +G+ ++ G LG IA IN+ +P KIVI+G T A ++ PA+ Sbjct: 302 VATVVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISGSGTRAVDLIEPALR 361 Query: 357 SCINTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLN 396 + + L + ++ + A GA +LV +A+ Sbjct: 362 AAVAANTLAVLQNRCEIIFHDQGDEVWARGAASLVLQALYR 402 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 373 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 102/393 (25%), Positives = 178/393 (45%), Gaps = 16/393 (4%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + G+ ++ N V ++ + G +++ +IA + L+PA+V+ I +L E G + Sbjct: 16 MPRTPPGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESGDVD 75 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 +GGRRA+ + R+ IG+ G + + DL+ +VLAE+ + + Sbjct: 76 VRPAV--SGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQA 133 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEA 181 Q + + +++ + + LPG +D +G + + Sbjct: 134 QEGIATAGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQ 193 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 + ER + V +D ALAE ++GA Q D ++ G G+G++ +GR+ G G Sbjct: 194 MSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVIDGRVHRGGAGT 253 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GEIGH ++ G C CGN GCLETI + + + + D T++ + Sbjct: 254 AGEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLESLR---------TSHGPDLTVRGMI 304 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 A GD+ + V+ GR +G A NL NPQ IV+ G++ A + LL + ++ Sbjct: 305 DRAVAGDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVHR 364 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 A+ A +V L R+ +GA ALV R Sbjct: 365 FAVPAAV--PTIVAGVLGERAEVLGALALVLRE 395 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 162/403 (40%), Positives = 252/403 (62%), Gaps = 2/403 (0%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + Q G++D +KQ N+ AVYRLIDQ GP+SRI ++ +QLAPAS+TKI R+++E L++E Sbjct: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 Query: 65 VD-QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 ++ ++A GR A+ +V ET +H + +R+ R + + L DLSSK++ EE L + Sbjct: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 L +++ I QF +Q+KL L +I++ LPG++D ++G +H MP V+ L EAL Sbjct: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E+ V ++ HDI + +AE FGAS+ D I V + GAG+I++G + + ++ Sbjct: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 EIGH QV+P G+RC+CGN GCLETIA+ +I + L Q S + T+ ++C+ Sbjct: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA +GD LA ++I VG H+G+ +AI +NLFNPQKI+I +++A +L P I I Q Sbjct: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 Query: 363 ALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 AL A+ ++ V ++ ++ + ALVK AM NG LL LL+ Sbjct: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 >UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=Meiothermus silvanus DSM 9946 RepID=C1XPR1_9DEIN Length = 777 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 174/408 (42%), Gaps = 23/408 (5%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 + P ++ G+ +K++N A+ + ++R ++A + L ++++ + QL+ G Sbjct: 377 LVPMSPSRKGDPLEMKRINRRAILEALKGSRSLTRAELARRLGLTKSTISSLMDQLVSEG 436 Query: 61 LIKEVD---QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL 117 L+ + S GR + + A+G LG ++ + D + +L E + Sbjct: 437 LVLSRGDTLRPKSQLGRPGVEVGLNPAGAVALGAELGVENSVVLAVDWTGTLLFREEWGA 496 Query: 118 PERTQ-QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW 176 RT L + + + + + LPG+VD G +HY P++ ++ Sbjct: 497 DPRTPLSERLERLTQVTRHALQRHPEA----LGLGLALPGVVDA-RGWLHYAPNLGWRDF 551 Query: 177 GLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 + EAL+ R + +D S A E +F Q + + G G G++ G + Sbjct: 552 SVAEALQARLPFPVHIENDANSSAAGEVFFTPRQGQ--LAYLMLGTGLGVGLVHAGTVLR 609 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT 296 G NG GE+GH + +RC CG CLET + A+ + L + Sbjct: 610 GANGAFGEVGHW-LGSSPKRCRCGRVSCLETEVSLRAMLEHYHALGGKAK---------D 659 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 + K A G LA E + +GR LG+ IA ++P+++V+ G EA L + Sbjct: 660 FWEVLKQAQTGHRLAVESLAELGRALGRLIANLAVAYDPERVVLGGAGAEAWDYLQQPLR 719 Query: 357 SCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML-NGILLQH 402 + A L V S H + A+GA ALV + L +G L +H Sbjct: 720 QAVEEHAFLRQHQRLEVQPSLFGHLAPAMGAAALVLHSFLASGGLREH 767 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 96/399 (24%), Positives = 171/399 (42%), Gaps = 23/399 (5%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 + +++ N A V L+ ++G SR ++++ S L +++T I LI+ G++ E Sbjct: 11 LKDLRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIETGSLVGG 70 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKV--LAEEHYPLPERTQQTLEHAL 129 GRR+I I T +G+R+ R T+ + D+ ++ L + ++ + Sbjct: 71 RGRRSIGIRLNTEKLIVLGIRVTRSSYTLAIIDIFGELKNLEKHSITKDLEDP-SVFERI 129 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 L + F+ +K + + + LPG + ++ + +++ + E R + Sbjct: 130 LEDASTFLLKNDQKP---VGVGMALPGPYLINEDTSLFLTNQGWKSFTFTKKFESRLHLP 186 Query: 190 CFVGHDIRSLALAEHYFGA---SQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 FV D A+ E +FG Q + + V G GAGI+ +G+I G G GEIG Sbjct: 187 VFVEQDSNVGAMGEWWFGNSEIGQGTK--VFVSTGDGVGAGIVVDGKIQRGALGAAGEIG 244 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ + G +C CGN GCLE + AI + + +++ Sbjct: 245 HMSINFEGPQCQCGNKGCLELYCSEKAILKAAK---------CLSKPILNFESLVTEYRA 295 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 G+S +E++ G IA LFNP +V+ G + L + + Sbjct: 296 GNSAVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNRTVRRHIYPL 355 Query: 367 FRTNLPVVRSELDHRS-AIGAFALVKRAMLN--GILLQH 402 F N+ + S L+H S IG A+V +L LL H Sbjct: 356 FYQNIGLQFSALEHDSCLIGIAAVVFDRLLKKPSFLLDH 394 >UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA6_9BACI Length = 387 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 89/399 (22%), Positives = 157/399 (39%), Gaps = 35/399 (8%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 VKQ N + + + Q PISR +A+ L A+V+ + +L++ +++V S+ Sbjct: 5 QLEVKQQNKKLILKTVYQLEPISRADLAKVLSLTKATVSNLVDELVQEHYLEQVGLGKSS 64 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GGRR + + + + I V +G + L DL ++ + + + Sbjct: 65 GGRRPLMLKINEKAGYTISVDIGVNYIRSILTDLKGGIMKKAVETTDTNVYEDTMRYIET 124 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + I+ L+ I +PGLVD D G + P++ + + + E F V Sbjct: 125 MVNNLINDMDDAPFGLVGIGFGVPGLVDSD-GTVISTPNLDWQESDIRKRFEAAFDVHVI 183 Query: 192 VGHDIRSLALAEHYFGASQDCEDSI-------------LVRVHRGTGAGIISNGRIFIGR 238 V ++ + A E FG + I +G ++ GR Sbjct: 184 VENEANAGAFGEKSFGEGISSDHFIYISGGIGIGVGLIF-------------DGVLYRGR 230 Query: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK 298 NG GE+GH ++ G C CG GC E A+ I + L +P T++ Sbjct: 231 NGFTGELGHTIIQMDGLTCSCGKKGCWERYASELYILKEYEKLKG------MPWHQLTLE 284 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 A D + RH + IN FNP+KI++ +T+A++ +LP IE Sbjct: 285 EAVTEAAA-DEDVRAIFHRAARHFAIGLTNIINSFNPEKIIVGNRLTQAEQYMLPVIEEV 343 Query: 359 INTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 I A+ + + + D + +G A + Sbjct: 344 IAETAISPIAKGVGIHFNNTDQLATVLGLSAFSIERFFD 382 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 176/370 (47%), Gaps = 8/370 (2%) Query: 36 IQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGR 95 + ++ + +VTK+ +LIE G++ + + + GGRR + + IGV + + Sbjct: 35 ADLGKELNFSVPTVTKMVGELIEDGIVMDFGKMETPGGRRPNIYGLNQSSGYFIGVDISQ 94 Query: 96 HDATITLFDLSSKVLAEE-HYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVIL 154 I L + ++ E+ E L I F+ ++++I + + Sbjct: 95 KRVHIGLINFKGDLIDEQMDISFEEAHPHERFERLCEIIEDFMSHTVVPKDKILSIGINI 154 Query: 155 PGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCED 214 G V+P +G + + L E EE+ + + +D R++A E+ G Q ++ Sbjct: 155 SGRVNPQTGHSYSFFYFDER--PLTEMFEEKLGIDVSIDNDSRAMAYGEYIKGRVQAEKN 212 Query: 215 SILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAI 274 I V V G G G+I NG+++ G++G GE GHI CHCG GCLET A+ +A+ Sbjct: 213 IIYVNVGWGLGLGVIVNGQLYYGKSGFSGEFGHITAFENEILCHCGKKGCLETEASGSAL 272 Query: 275 EQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIA 329 ++ L L G S + D+ T+ I A + D LA E+IE VG LGK +A Sbjct: 273 YRKFLEKLHNGQSSLLTQQKENEDEITLNDIIDVALQEDILAIELIEEVGNTLGKHVAGL 332 Query: 330 INLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFAL 389 INLFNP+ ++I G + A L+ + S I +L + + S+L ++ + +L Sbjct: 333 INLFNPELVIIGGTLANAGDYLILPLRSAIKKYSLNLVNKDSSIKVSKLGDKAGLLGASL 392 Query: 390 VKRAMLNGIL 399 + R+ G++ Sbjct: 393 LARSKFIGLI 402 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 102/392 (26%), Positives = 184/392 (46%), Gaps = 7/392 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQY-GPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 +++ N R + GP+SR +IA + L+ A+V + +L+E G+++E + Sbjct: 14 TAQDIRRRNRFDALRCVFAAPGPVSRQEIAAATGLSFATVANLVAELLEAGVLREAGHED 73 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT--QQTLEH 127 S GGR + +G+ + + LFDL+ VL PLP+ Q + Sbjct: 74 SKGGRPRARLAVNAERGALVGIDVAETSVQVELFDLALTVLRGVRLPLPQTDVRPQDVVD 133 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 A++ + + + ++ V +PGLV+ + G + P+ + L L ER Sbjct: 134 AIVAGVEG-LSDSAVEAPRILGAGVSVPGLVEREGGVSVFSPYWSWRDVPLRSLLAERLP 192 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + ++ + +++ +AE +FGA ++ +D +++ + G GAGI +G ++ G + GE GH Sbjct: 193 MPLYLDNPLKAGTVAEMWFGAGREVDDLVVLTLRAGVGAGIAVDGALYRGATNSAGEWGH 252 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 + G C CG GC+E ++ I V L + P +D + + +AA +G Sbjct: 253 TCLVRGGRACRCGRQGCVEAYVSSRGIADTVRELDAESPL-LDPDEDVVVTKVARAAAEG 311 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCINTQALKA 366 D++A+E + R+LG+ A +NLFNPQ +V+ G + + LL I AL A Sbjct: 312 DAVAAEAVARTARYLGEAAADLLNLFNPQTLVLGGWVAERLGEPLLRQTRDVIAAHALPA 371 Query: 367 FRTNLPVVRSEL-DHRSAIGAFALVKRAMLNG 397 L RS + D+ +GA L+ Sbjct: 372 TLQALTFQRSTVPDNPVTLGAATFALEGFLDD 403 >UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6LW15_CLOB8 Length = 382 Score = 363 bits (933), Expect = 7e-99, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 163/387 (42%), Gaps = 12/387 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N +K+ N + L+ + I+++ I+ ++ +V+ +L G++++V S Sbjct: 5 NHSKIKETNRKKIIALLLKKNEITKLDISRILDISITTVSTNITELKSEGIVEDVRSLES 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 TGGR+AI+I ++IGV L + I+L ++ KV+ + + + L Sbjct: 65 TGGRKAIAIKLNENCRYSIGVALTPNHIKISLVNIKKKVIESMRVRHNSDGIENIINLLN 124 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 I + Y L+ I + LPG VD G I Y + +++ L E E + Sbjct: 125 ENIDLLMKKYNLCSANLLGIGISLPGTVDFKEGIIKYSYLLGAKDFNLKEKFE-YLDIPV 183 Query: 191 FVGHDIRSLALAEHYFGASQDC-EDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 +V ++ A E F +D + + V + G G GII NG+I+ G N + GE+GH + Sbjct: 184 YVDNEANLSAYYE--FLNKRDILRNLLYVSITEGLGLGIIINGKIYRGDNNSSGELGHTK 241 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + G++C CG GCLE + ++ I + N+ D Sbjct: 242 IAIDGKKCKCGARGCLEAYTSMNSLIDSYNEANSSNIS--------DIDEFEERYNQNDK 293 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A +V+ + L ++ + +F+P IVI G+I + ++ + L Sbjct: 294 DAHDVLNDYLKTLSLGLSNLVMIFDPSSIVIGGDINNLLNDKIDMLKKEVYKDNLFTNEN 353 Query: 370 NLPVVRSELDHRSAIGAFALVKRAMLN 396 N + + +GA + L Sbjct: 354 NCSISIASFKESYLLGAAMMPIEEFLE 380 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 363 bits (933), Expect = 7e-99, Method: Composition-based stats. Identities = 94/398 (23%), Positives = 178/398 (44%), Gaps = 10/398 (2%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G + G+ L+K++N + + I + I R IA+ + L+PA+VTKIT +LI RG++ Sbjct: 6 DGVKRRGSKHLIKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVL 65 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 E S+GGR+ I + + +GV++G + + D + ++ Sbjct: 66 EAGSAESSGGRKPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIVESARCDTESSDPG 125 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 T+ + + N + K L+ I + + G+VD G + + + + L+ Sbjct: 126 TIVNVIKNCWEKCRQE---KQSILLGIGIAVSGVVDSKEGIVRDSFLLGWRDVPIASLLK 182 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 E FK V +D+ S A++ + G ++D +++++ + G G +I +G+I G VG Sbjct: 183 EVFKCEVLVMNDVDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKIHN-AKGGVG 241 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRV-----LNLLKQGYQSRVPLDDCTIK 298 EIGH+ V G +C CG+ GCLE A+ A+ +++ LK+ Y+S + I+ Sbjct: 242 EIGHMTVVKDGAKCTCGSNGCLEAEASFGALAKKISSITESKKLKELYKSVKQSESSEIE 301 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + +A + + V E +G + IN+ P ++I GE E + L Sbjct: 302 YLREALKRDRKAFNHVFEEYAVLVGIALKNIINMLAPDYLLIGGEALEFQEKFLNKAIQY 361 Query: 359 INTQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAML 395 A + +L +G ++ + Sbjct: 362 AQKNAFGKLGEKVMFNVDDLGEVAWNLGVIFVLMDNLF 399 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 363 bits (932), Expect = 8e-99, Method: Composition-based stats. Identities = 98/389 (25%), Positives = 178/389 (45%), Gaps = 18/389 (4%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 + R + SR ++ + + +V+ QLI L+ E + STGGR + Sbjct: 13 LLRHVRTGRARSRAELVALTGASRNTVSARVDQLIAANLLAEGGRGWSTGGRPPTLLQFN 72 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQ 141 +R + V LG + + DLS++VLA +P+ + + + + Sbjct: 73 SRAGCVLAVDLGVTSVDVAVTDLSAQVLATVGHPIDIADGPRPVLAEVDRLAQLVLADAG 132 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLA 200 + ++ A+ + +PG V+ SG+ + P + ++ + A R++ +V +D+ +A Sbjct: 133 LEPADVCAVGIGVPGPVEHSSGRPSHPPIMPGWHDFPIPSAFG-RYECPVYVDNDVNVMA 191 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV-EPLGER--C 257 L E GA+ +D ++V+V G G G+I +GR++ G G+ G+IGHI V P G C Sbjct: 192 LGEM--GAAGSVQDVLVVKVGTGIGCGVIVDGRVYRGAQGSAGDIGHIHVTTPDGRLVTC 249 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEY 317 CG CLE +A A+ + + L T + + + A +GD A E++ Sbjct: 250 RCGQENCLEALAGGGALLRDAVAA---------GLPVSTTREVVERAAQGDGAAIELVRE 300 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 GR +G +A +N FNP +IV+ G + +A LL I + +++ L + SE Sbjct: 301 AGRTIGTVLAALVNFFNPHRIVVTGGVAQAGVPLLAGIRESVYRRSMPLAARALEITVSE 360 Query: 378 LDHRSA-IGAFALVKRAMLNGILLQHLLE 405 S +GA + L+ ++ L Sbjct: 361 APELSGRVGAALMAIEGFLDEESVEQALA 389 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 363 bits (932), Expect = 9e-99, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 172/392 (43%), Gaps = 15/392 (3%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 G+ +++ N + I Q+G ++++++A + L+ A+V+ I ++L G+++ Sbjct: 4 KPPTPGSQSSLRESNRTRIIDAIKQFGGLTQVELAGATGLSAATVSNIVKELTTLGVVQT 63 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQ 123 S GRRA + V+ G + L D S +L++ PL + Sbjct: 64 SPSTRS--GRRAQHVTLARTPGLVGAVQFGLRHMRVALADSSGSLLSDHQLPLGADHRAD 121 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 IA ++++ + EL ++V LP V+ SG I + +N + + Sbjct: 122 AGLDRAALLIADMMETFDAESAELQGVAVALPAPVEHSSGLITSPGIMRGWDNVAVAHVM 181 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 ER +V + AL E GA+ + ++ ++V + GA +I NG +F G NG+ Sbjct: 182 SERIGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELFWGANGSA 241 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GE GH +P G+ C CGN GCLET+A + + + V T+K + + Sbjct: 242 GEFGHTTTDPDGQICRCGNRGCLETVAGGNVLLEALR----------VSHGVMTLKDMMR 291 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A GD I GR +G A N+FNP+++V+ G++ +LL + I Sbjct: 292 YARDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDPLRETIERF 351 Query: 363 ALKAFRTNLPVVRSELDHRSA-IGAFALVKRA 393 +L + + +V L + IG Sbjct: 352 SLPSTAECITIVPGSLGADAEMIGTITYALDR 383 >UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida fusca YX RepID=Q47PH9_THEFY Length = 417 Score = 362 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 102/406 (25%), Positives = 166/406 (40%), Gaps = 10/406 (2%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G V++ N V R I P SR +A + L A+V+ + +LI+RGL+ Sbjct: 3 GATEGPAGFQAVRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLVC 62 Query: 64 EVDQQ-ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-- 120 E GR + + A+G+ + + DL + + H R Sbjct: 63 ETGLVNERRVGRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARAA 122 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + L + + + + R L+ +SV +P LVD SG + P++ N+ L + Sbjct: 123 GPEECAKQLKTLLLETVADPLLRDRPLLGVSVAIPALVDVSSGTVTNAPNLGWRNFPLQQ 182 Query: 181 ALEERF------KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI 234 L E V +D A+AE+ G D + + G GAG++ NG Sbjct: 183 RLTELLADTPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLMNGEP 242 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 G +G GE+GHI + G C CG GCLE +A +I +R + L R + + Sbjct: 243 LRGASGFAGEVGHIPLLKDGPACACGQDGCLEALAGLDSILRRAVPDLVPEGPVRGSVVE 302 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 + + A GD+ A + +E G LG+ A +NL NP I++ G LLP+ Sbjct: 303 SLVAETVRRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGYFVPLSPWLLPS 362 Query: 355 IESCINTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLNGIL 399 + + N + S L +A G + A+ G+L Sbjct: 363 CREAMAAYSFAPNSGNCRIEPSTLGLSAAARGGAMALIDALDTGLL 408 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 110/398 (27%), Positives = 186/398 (46%), Gaps = 12/398 (3%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MT Q G+ ++Q N V + + G +++ +IA + L+ ASV+ I R L G Sbjct: 1 MTTDAQVTPGSQAALRQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-E 119 ++ + S+ GRRA ++ + + + T+ L + +VL EE Sbjct: 61 VVSVRET--SSNGRRARAVTLQRPPGVLVAIDFTHSRLTVALGNTDGRVLQEESIAYDVS 118 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGL 178 + + + ++ ++ +PG VDP +G I + + + Sbjct: 119 EDPVRGVRRAVWLTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIGDITSMPHWAGFNP 178 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 L+ER + V +D ALAE GA++ E + V+V G GAG+I GR+F G Sbjct: 179 GAELQERLGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRLFRGM 238 Query: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK 298 NGN GEIGHI ++ G+ C CGN GCLET+ + + + + + + Sbjct: 239 NGNAGEIGHIGLDERGQVCRCGNRGCLETLVGTPYLLDMLPQQGRVKHGASLV------- 291 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + +AA +GD +I G LG+ +A+ +N+ NPQ +++ GEI EA ++LL + Sbjct: 292 DLLEAAQEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDPMRRA 351 Query: 359 INTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAML 395 + AL T L +V EL R+A+ GA +V + Sbjct: 352 MELGALGNALTGLRLVTGELGERAALRGALQVVLDSTF 389 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 106/397 (26%), Positives = 192/397 (48%), Gaps = 15/397 (3%) Query: 4 GGQAQI-GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 +A G++ ++ N + + + G ISR ++A ++ L+ ++V+ + L +GL+ Sbjct: 1 MRRAAPSGSLASLRDRNRRLLVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLV 60 Query: 63 --KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-E 119 +EVD GGR + + E A+G+ G+ + + DL+ VLA+ P+ E Sbjct: 61 AEREVDGAGPQGGRPPVLLSLERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPMETE 120 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGL 178 ++ + + Q + + ++I + +PG +D +G++ + Sbjct: 121 QSAPEGFEVAVALVHQALADAGVEQTDVIGAGMGVPGPIDISTGEVGSSAILPGWIGLRP 180 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 E + R + V +D ALAE +GA +D +D + V+V G G+G++ G+++ G Sbjct: 181 REDMSARLGLAVRVENDANLGALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGA 240 Query: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK 298 G GEIGH V+ G C CGN GCLETIA+ I + + D TI+ Sbjct: 241 GGIAGEIGHSMVDERGAVCRCGNRGCLETIASTRQIRELLRPARGA---------DLTIE 291 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + A +GD + VI R +G +A N+ NP K+++ G+++ A VLL + Sbjct: 292 EVIAHAREGDRASRRVIGDAARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPLRDE 351 Query: 359 INTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAM 394 ++ A+ A ++ +V L R+ +GA ALV R + Sbjct: 352 VSRHAVPAAGGHVEIVPGVLGRRAEVLGAAALVLRDV 388 >UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUP6_ALKMQ Length = 392 Score = 361 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 172/388 (44%), Gaps = 11/388 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + D +K++N + + +I Q I++ +IA +L+ ++T QLIE GL++E S Sbjct: 8 SQDQIKEINRSNIINMIKQKYEITKHEIAVALKLSIPTITTNINQLIEEGLVEEAGVGNS 67 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHAL 129 TGGR+ + + ++GV + I L DL++ ++ E + + + + + + + Sbjct: 68 TGGRKPMILKLVENARFSVGVDVSPDKVRILLIDLNNTIIDEASFDYVKDLSFKGVLDEV 127 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 I +F+ +++ + + LPGLVD D + P+I V ++ E ++ ++ Sbjct: 128 KTEIERFMTQNNISKNKILGVGISLPGLVDEDRLILENAPNIGVRDFNFQE-FQDSLQLR 186 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 F+ ++ A AE G + + + + V + G G GII N I+ N GE GH++ Sbjct: 187 VFIENEANIAAYAEKEIGKTVNMRNVVYVSITEGVGTGIIVNQHIYKSSNKKAGEFGHMR 246 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + C+CG GC E A+ A+ + L T+ I + Sbjct: 247 ISDEPRPCNCGRTGCWELYASKKALSRYYEE--------STGLKVSTLDEIFSEESFNMP 298 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 E I L I I NP+ ++I GE+ + +K +L I N ++ Sbjct: 299 SVKEAIGRYIDCLFIGIENIILGLNPEFVIIGGELGKYEKEMLTLINGRNNMKSSFVEYE 358 Query: 370 NLPVVRSELDHR-SAIGAFALVKRAMLN 396 VV S L + S IGA L + N Sbjct: 359 GTKVVFSALKDKGSLIGAALLPLEDLFN 386 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 361 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 186/387 (48%), Gaps = 6/387 (1%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ--QASTGGRRAI 77 ++ L+ G I+R +IA ++P SVT +T +LI G ++EV++ + ++ GR + Sbjct: 34 RQQIFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPV 93 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEHALLNAIAQ 135 ++ + IGV+L T TL D LA +++ L I + Sbjct: 94 ALELVPDALYVIGVKLSDELHTATLTDFGGNALASASQITTADKKSADELLTETEAIIRK 153 Query: 136 FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHD 195 S + +++ AI V + G+V+ ++G + + P ++ + L + FK + +D Sbjct: 154 VCKSAKISQKKISAIGVGISGIVNYETGVVAWSPLLEELDTPLGDIFSTYFKTPVCIDND 213 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 L LAE +FGA + + ++ + G G G +S+ R+F G + E+GH +V+ G Sbjct: 214 ANVLTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDGA 273 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 C CG GCLE A+ A+ + L R L+D +K++ + A GD + ++ Sbjct: 274 LCRCGQRGCLEAYLADYALAREASTALITPSSKRQDLNDY-LKSLYEMAKLGDQASLKIF 332 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 + GR+L ++ I+LF+P+ I+++G+ + + + ++ + + AL R + + Sbjct: 333 KRAGRYLAVALSNIIHLFDPKLIILSGKPMQYEFLYDEEMQIEMRSLALYKSRFDTQIEI 392 Query: 376 SELDHR-SAIGAFALVKRAMLNGILLQ 401 A GA AL + I+++ Sbjct: 393 QSWGSMVWARGATALALTELTKTIIVE 419 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 360 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 191/396 (48%), Gaps = 14/396 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + ++ +K+ N+A +++ + GP++R +IA +++L P++V+ IT LI + ++KEV Sbjct: 2 KKASLSSLKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEVGS 61 Query: 68 QA-STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 + S G++ I + +F IG +G + + + + +L + + + L Sbjct: 62 EDVSRVGKKGILLDINYDDFLFIGYDVGSAYSRVIVSNGKGDILYSKRFVSEKND--KLL 119 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + I + + +I I + PG +DP++G + +I + N+ + + +++ F Sbjct: 120 KQIYENIKMVKNKFN-----IIGIGMAFPGYIDPENGVVIRSHNIDISNFEVKKVMKKEF 174 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + +V H+ +A S +D ++ + G G GI+SNG+I G GE+G Sbjct: 175 NLPAYVDHNTIMMARN-LISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGELG 233 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ V P G +C+CG GCLET +++ AI + + + + + K + + A K Sbjct: 234 HVTVNPEGRKCNCGKNGCLETESSSKAIVRNYEEISGKNLECEGSCE---SKLVYELAKK 290 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 GD A + E G++LG IA +N+ NP+K+ IAG ++ + L + E N Sbjct: 291 GDENAIKAFERAGKYLGIGIATLVNILNPEKVYIAGGVSNGWEFLKDSTEQSYNQHIF-Y 349 Query: 367 FRTNLPVVRSELDH-RSAIGAFALVKRAMLNGILLQ 401 ++ + S + +A GA + L+ Sbjct: 350 ANKDVTIEVSSIGEYITACGAATYAFEKYVREELIP 385 >UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5RGV2_CLOCL Length = 393 Score = 360 bits (925), Expect = 6e-98, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 170/400 (42%), Gaps = 19/400 (4%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M + + + + +K++N V L+ ++ +++ IA++ ++ +V +LIE G Sbjct: 1 MRNLTKIKKLDQETIKKINQNNVLYLLYRHDQLTKHDIAKKLGISIPTVVTNINELIELG 60 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 ++E STGGR+ + + + +++GV + + + L +L +++ E + E Sbjct: 61 FVEEAGVGKSTGGRKPVIVKFLPDSRYSMGVVITKDYVRMVLTNLHFEIIKEVSISIDEE 120 Query: 121 TQQTLEHALLNAIAQF----IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW 176 ++ A+ +F + +++ I LPG V+ + + ++ ++N Sbjct: 121 L--QSIDYIIEAVKEFQKNVCEELSIDENKILGIGFSLPGTVNEKTLILENAINLGIKNI 178 Query: 177 GLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 F ++ ++ + A AE++ + I V + G G GI+ N ++ Sbjct: 179 DFKNY---DFNCPVYIENEANASAYAEYFVYPDKSNSKLIFVSITEGIGTGIVFNSLLYK 235 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT 296 G N GE GH+ + G+ C CG GC E A++ A+ + L Sbjct: 236 GANKRAGEWGHMTIVKDGKSCACGKNGCWEVYASSKALLKTYNK--------DTGLKRRN 287 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 I I ++ D +V++ +L + I I + +P KIVI GEI + + A+ Sbjct: 288 ISEIFMELDE-DYKTQKVVDEYLEYLAEGIKNIILIMDPDKIVIGGEIAFYEDYIKEALN 346 Query: 357 SCINTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAML 395 + + + ++L + S IGA L + Sbjct: 347 EKVYKPNAFFTAKDCKIEFTKLKANASVIGAALLPVMPLF 386 >UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=1 Tax=Streptomyces avermitilis RepID=Q82LB9_STRAW Length = 424 Score = 359 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 170/392 (43%), Gaps = 4/392 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++ N V R I P SR ++A + L+ A+V + +L++ G++ EV + S Sbjct: 14 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLGMLTEVGFEDS 73 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHA 128 GGR + + IGV + + LFDL LA + E + + Sbjct: 74 AGGRPRGLVAVNSGGGALIGVDIAETYVRVELFDLGLGQLARADEDMRPGESRPEQVVGH 133 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + A+ + ++ + V +PG VD D G Y P+ + L+ L E Sbjct: 134 VAAAVGSVVAQAGVDGARVLGVGVSVPGQVDRDRGIAEYAPNWDWHDVPLLSLLAEHITH 193 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ + +R+ A+AE +FGA++ D+++V + G GAG+ G + G + + GE GH Sbjct: 194 PLYLDNPLRACAVAELWFGAARGRGDAVVVNLGTGVGAGLALGGALHRGVSNSAGEWGHT 253 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G CHCGN GC+ET I Q + L TI + + D Sbjct: 254 TLVLDGRLCHCGNHGCVETYVGAPGIMQNLRELSPADPLLHPGDQTATIDALARGVAARD 313 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIESCINTQALKAF 367 +A +V+ R+LG IA +NL NP+ +V++ + + LL + + AL+ Sbjct: 314 PVALKVVRDTARYLGAGIADLVNLLNPEVVVLSSWVAATLGEPLLDEVREAVARHALRRP 373 Query: 368 RTNLPVVRSELDHR-SAIGAFALVKRAMLNGI 398 + +V S + +GA L + Sbjct: 374 FASTEIVLSPIPTDPVCLGAATFALEGALQSV 405 >UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FQW3_SACEN Length = 405 Score = 359 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 175/396 (44%), Gaps = 7/396 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q N+ V N A V I +G +SR+++AE++ L +++ I R L+ GL+ E Sbjct: 7 QGTNLPRVGGFNRAVVLDTIRAHGEVSRVELAERTGLTAQTMSNIVRALMADGLVAENGH 66 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLE 126 STGG+R + + + ++G+ L T L DL+ V +P + + T+ Sbjct: 67 APSTGGKRRVLLRVVPDAYSSVGLHLDPESITGVLLDLAGGVRLRSRRRVPQDASPATVA 126 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEER 185 AL + Q + ++ + + +PG +D D ++ P++ ++ L + +E+R Sbjct: 127 AALTRTLKQLVRRSGIDESRVLGVGLAVPGPLDADHRRVLGPPNLPGWDDVALADLVEQR 186 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 + + +D + A+ E + + V + G G G++ ++ G + N GEI Sbjct: 187 AGMPVVMDNDATAAAIGERWAAGKARRGSFVYVYLGAGVGVGVVLGDQVHRGTSNNAGEI 246 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ G C CG GCLE + AI L+ V + IC+AA Sbjct: 247 GHVNGGGAGRPCSCGKRGCLEAYCSMRAIVDEWLSATGSPEGDSVS---ADYEEICRAAA 303 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQAL 364 GD+ A ++ LG+ +A +++ + +V+ G + ++++ +E + Sbjct: 304 GGDATAVRLLRQAATKLGQALATVVSVLDVDHVVLGGPALRHVEELVRSRVEKTLAAHVW 363 Query: 365 KAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGIL 399 + V + + + A+GA +LV + L Sbjct: 364 APAVRPVRVRTALIGEDAGAVGAASLVLDHAYSPRL 399 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 169/396 (42%), Gaps = 17/396 (4%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + + V +++ N A + R + GP SR +++ + L+ ASV+ +T LI G+I Sbjct: 1 MVRPERRTVRDLRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGIIV 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERT 121 E S GGR + + + +AIGV +G + LFDL A+ YPL Sbjct: 61 EAGLVESDGGRPRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADYPLRPGRHD 120 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 + +L+ I + + ++ + + +PG+V+ + + + L Sbjct: 121 VDLVVRHILSGIDAVLAAGGVDPARVLGVGIGVPGIVESGPEALIHAQTFGWDAVPLGTL 180 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L + +V + +++ AE +FGA + +I+ + G GA II++G + G N + Sbjct: 181 LRAGTSLPLYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRGANSS 240 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GE GH ++ G C CG GCLE +I R G + + + + Sbjct: 241 AGEWGHTKIMMGGRACRCGGRGCLEAYIGAESILDRA------GLSAEIADEQ---AVLA 291 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCIN 360 + G VI+ +LG +A INLFNP++IVI G + L I Sbjct: 292 ELVRSGGP----VIDETADYLGAGLANLINLFNPERIVIGGWAGLLLGRHHLTRIRRSAA 347 Query: 361 TQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML 395 +L +V L + A+GA LV L Sbjct: 348 DNSLTQPYGTASIVLGRLGPDAVALGAATLVVEEFL 383 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 358 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 179/381 (46%), Gaps = 9/381 (2%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 V G + + ++ L+ +T + LI GLIK+ + STGGR+ Sbjct: 28 VISYFANIGNATIADLCKELNLSAPKITNLLSDLIADGLIKDYGKVESTGGRKPNLYGLV 87 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLA-EEHYPLPERTQQTLEHALLNAIAQFIDSYQ 141 + IGV + ++ I L +L ++ E P + AL I FI Sbjct: 88 PDSAFFIGVDIKQNHINIGLSNLQKNLIRITEKIPYHLDNNKESLEALCKLINDFIGELT 147 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLAL 201 +L+ + + L G ++ +G + + L + +E + + F+ +D +S+A Sbjct: 148 IPKEKLLGLGINLSGRINYATGYSYSFFYF--NEEPLSKIIESKIGIRVFLENDSKSMAY 205 Query: 202 AEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGN 261 E G + ++ + + + G G GI+ NG+++ G++G GE GHI + C CG Sbjct: 206 GEFSAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSGEFGHIPMFDNEIICRCGK 265 Query: 262 FGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKGDSLASEVIE 316 GCLET A+ A+ + L +G S + +D ++ I AA D LA E+I Sbjct: 266 KGCLETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKMEDIINAAIHDDVLAIELIA 325 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 +G +LG+ IA+ INLFNP+ +++ G + ++ + I+S IN +L + + S Sbjct: 326 KIGDNLGRGIALLINLFNPELVILGGSLAATEEYIRLPIKSAINKYSLSLVNQDTNLKMS 385 Query: 377 ELDHRSA-IGAFALVKRAMLN 396 +L R+ IGA LV+ +L+ Sbjct: 386 KLGERAGIIGACLLVRNRLLS 406 >UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=Actinomycetales RepID=D1BAX4_SANKS Length = 410 Score = 358 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 85/395 (21%), Positives = 169/395 (42%), Gaps = 4/395 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++ + +AV R +R ++++ + L+ A+V+ + ++ + G++ +S Sbjct: 5 TARDLRSDSRSAVLRAFFSLRTATRQELSQHTGLSVATVSTLVKEFLTAGVVHVEAVVSS 64 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQQTLEHA 128 GR + + + +GV + T+FDLS PL E + Q + Sbjct: 65 GVGRPLEQLRLDPSRGYIVGVDVAETYVETTVFDLSLDPRGTVSVPLDEHQNSPQYVVDG 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + A+ + ++ + V LPG V PD G + P+ + + E L + Sbjct: 125 IRLAVHGVLALAGVSTSSVVGVGVSLPGQVQPDLGVSVFAPNWAWHDVRIKELLTAELGM 184 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V + ++++A+AE +FGA ++ D +V + G G+G++ NG + G + N GE GH Sbjct: 185 HVHVDNPLKAIAVAELWFGAGREHRDLAIVNLGTGVGSGLVINGELVRGVSNNAGEWGHT 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G C CG GC+E ++ + + + + + GD Sbjct: 245 LLALDGRLCRCGRQGCVEAYVGVNGMKATLSEIQPDHPALLQQEQRRFVDAVYEGVVAGD 304 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQALKAF 367 + E+++ R+L ++ +N+ NP+ +V+ G + L+P + + I AL++ Sbjct: 305 PVFVELVDETARYLAASLGDLVNMINPEHVVLTGWTVARLGDWLIPLVRAKIPDAALRSS 364 Query: 368 RTNLPVVRSELDHR-SAIGAFALVKRAMLNGILLQ 401 L V S L A+G L L + L Sbjct: 365 VAVLTVSASSLASSTVALGMSTLTLEHFLAAVGLP 399 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 357 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 180/400 (45%), Gaps = 13/400 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 A V L+ +R +I +S L VT+ QL+ GL++E S+GGR + Sbjct: 25 LATVLDLVRSGAARTRPEIGRRSGLGRTVVTQRVNQLMACGLLEEGALGPSSGGRAPREL 84 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFID 138 + LG + + DL+ VLAE + + + + + +D Sbjct: 85 KFRAHAGVILAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLERVEEVLDELLD 144 Query: 139 SYQRKLRE----LIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVG 193 + + + + + + LPG V+ +G+ P + + + + + L R+ +V Sbjct: 145 QVRAEQNDPDLTVWGVGIGLPGPVEFATGRPSAPPIMPGWDGYPVRDRLARRYNTPVWVD 204 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV-EP 252 +++ ++AL E G+++ D + V++ G GAG++S G + G G G+IGH V + Sbjct: 205 NEVNTMALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTLHRGSQGCAGDIGHAAVSDE 264 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKG 307 C CGN GCLE A AA+ + L+ ++G + T I +AA G Sbjct: 265 TEVVCRCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLADTGTITAADISRAAQSG 324 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D + E++ GR +G +A ++ FNP ++I G + A +LL A+ + ++L Sbjct: 325 DRTSVELLTRAGRFIGGLLATLVSFFNPALVIIGGGVAGAGDLLLAAVRETVYRRSLPLA 384 Query: 368 RTNLPVVRSELDHRSAI-GAFALVKRAMLNGILLQHLLEN 406 L ++RS L+ R+ + GA +V + L + Sbjct: 385 TRELRIIRSTLNDRAGLVGAAFMVIDELFTPERLARWVTE 424 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 357 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 93/403 (23%), Positives = 179/403 (44%), Gaps = 10/403 (2%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 + V +++ N + + I ++GP+SR ++ ++ L+ ASV+ + +L++ G+++E Sbjct: 3 VRRTTVRDMRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAG 62 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP--LPERTQQT 124 S GGR + + + +G +G + LFDL+ V+A P P+ + Sbjct: 63 SVESDGGRPRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSPIETPKPAPEL 122 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 ++L + + I ++ + V + G+V+ + + + + + L L Sbjct: 123 AVRSVLQGLDEVIAGAGVAKERVLGLGVAVAGVVEGPADAVVHAQTLGWDGVPLGAMLAA 182 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 ++ V + +L AE +FGA + D+++ V G GA +++ G + G + GE Sbjct: 183 GTEIPIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTRSSAGE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GH + G +C CG GCLE A+ +R + DD + + A Sbjct: 243 WGHTTIMYGGRQCRCGALGCLEAYVGAEAVLERYREAGGPSAAT----DDEEAEFVALLA 298 Query: 305 NKG-DSLASEVIEYVGRHLGKTIAIAINLFNPQKIV-IAGEITEADKVLLPAIESCINTQ 362 G +A++V+E +LG A +NL NP++IV + LP + + Sbjct: 299 AVGTSEVAAKVVEDTIGYLGAGFANLVNLVNPERIVLGGWAGLLLGERYLPQLREAVGRH 358 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFAL-VKRAMLNGILLQHL 403 AL+ + + EL + A GA L V R + G + + L Sbjct: 359 ALRRPYAQVAIELCELGSDAVARGAATLPVLRLLREGGVTRKL 401 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 357 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 100/392 (25%), Positives = 185/392 (47%), Gaps = 7/392 (1%) Query: 15 VKQLNSA--AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +++LN + + + +SR +A++ +L A+++K ++L+ + +I E STG Sbjct: 9 IRKLNRTDYRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHATLESTG 68 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR S++ IGV LG I L+ +++ +TQ+ + L Sbjct: 69 GRPRKSLIVNKEYKKIIGVNLGAGFINIVASHLNGEIIQIRQRKFVYKTQEKVLDLLYEG 128 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I+ ++ + +I I + GLVD G + + PH + + + LE +F + V Sbjct: 129 ISDMVEKFG--EESIIGIGLATHGLVDRKKGTVIFSPHFKWKKLDIRRELERKFNLKVIV 186 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D+R++ AEH +G + + ++ +L+ + G GA I NG+IF G N + GE+GH V Sbjct: 187 ENDVRAMLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGHFIVNE 246 Query: 253 -LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 +C CG FGCLET + A+ +V+ L++ + TI I + + Sbjct: 247 KSTIQCRCGKFGCLETECSEQALINKVVWELEK-KDKNESKEKITIDKIYSRSKHKEEPY 305 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 +++ GK I +N+ + +V+AG+I +K+ + ++ L+ F + Sbjct: 306 YSIVKEAAYETGKVIGNILNILDIDNVVVAGDIIMTEKLYMNNFRKGVDRMILEDFNKKV 365 Query: 372 PVVRSELDHRSAI-GAFALVKRAMLNGILLQH 402 +V S LD I GA +LV + G L Sbjct: 366 KIVSSALDDMIGIYGAISLVTSNLFVGEKLMK 397 >UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus sp. SG-1 RepID=A6CIT4_9BACI Length = 372 Score = 356 bits (916), Expect = 7e-97, Method: Composition-based stats. Identities = 94/394 (23%), Positives = 180/394 (45%), Gaps = 33/394 (8%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + G+ +L+KQ+N + + P+SR ++ + L+ ++V+ I +LI++ LI E Q Sbjct: 2 KKGDYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEEGQ 61 Query: 68 QAST--GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 ST GGR+ I + + IGV +G + + DL +++ +E +P + Sbjct: 62 GESTKEGGRKGIQLFFNPKCSFGIGVDIGGTKILLVVTDLDGEIIFKEEHPTEKNP---- 117 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 ++ I FID L + A+ + +P +++ G + P ++ ++ ++ L+E+ Sbjct: 118 -EKIVKLIYNFIDRSNTPLDLISAMGIGVPSIINTKEGIVVDAPALKWRDYRFLDFLKEK 176 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 F+ CF+ +D+ E FGA +DC D + + + G G+ + +NG+I G + GEI Sbjct: 177 FEFPCFLNNDVNCAMYGELRFGAGRDCSDLLFIAIGTGVGSAVYANGQIVEGATFSAGEI 236 Query: 246 GHIQVE----PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 G++ V+ G + G FG E + A+ + T K + Sbjct: 237 GYL-VDKSDVENGYKRVPGEFGAFENKTSGTALTKY----------------GMTPKELF 279 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 +GD A E+I+ +L IA A L N K++I G ++ + ++ I+ N Sbjct: 280 DQYYQGDREAQEIIKDFTLNLAIAIANASCLLNSSKVIIGGGVSRSMVGIIQHIQRLANQ 339 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALVKRAM 394 + + S+ + AIGA A + Sbjct: 340 WTPFF----VEIESSQFQTDAGAIGAVAYAFEML 369 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 356 bits (915), Expect = 8e-97, Method: Composition-based stats. Identities = 102/387 (26%), Positives = 188/387 (48%), Gaps = 10/387 (2%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 + ++N LI GP+S+ IA+Q Q++P + I +LI+ G ++E STGG Sbjct: 2 QLHEVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYVQEEGVGHSTGG 61 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 R+ + I + L I +L V +E++ + + ++ + Sbjct: 62 RKPVLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSEQYGQVDSLRGEAYIDFVMKTL 121 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 ++FI ++ KL E + IS+++PG+V + G + Y + + + L + +E F + +V Sbjct: 122 SEFIGRFE-KLDECLGISIVVPGIVQAERGIVSYNAKLDLYDVHLKQKVEAAFGLRTYVD 180 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D+ ++ +AE FG ++ ++ + + V G G+G+ NG I+ G +G+ GEIGH+ V P Sbjct: 181 NDMNAMMMAEKQFGTAR-YKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIGHMSVLPG 239 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQG-------YQSRVPLDDCTIKTICKAANK 306 G C CGN GCLE AI R+L+ + + +AA Sbjct: 240 GPACPCGNQGCLENYVNWPAIYSRILSAWLTQGVKTAIIESAAGRPEAIKPTDFVEAACA 299 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 GD A V+E + L I +++L NPQ +V+ G + + L + IN++AL Sbjct: 300 GDPFALTVVEEMAESLAVAITNSLHLLNPQAVVLTGPHVQNNLPLFKRLNEKINSRALNP 359 Query: 367 FRTNLPVVRSELD-HRSAIGAFALVKR 392 + V + L+ ++ +GA A++ + Sbjct: 360 IARHTEVKPASLETNKDILGALAVLLQ 386 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 356 bits (915), Expect = 8e-97, Method: Composition-based stats. Identities = 105/400 (26%), Positives = 187/400 (46%), Gaps = 20/400 (5%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 ++G+ +L++++NS+ V + G +SR ++A+++ L+ +V++I +LI G+++ Sbjct: 1 MQPVRVGSKELIREINSSLVLGELR-GGLVSRTELAKRTGLSLPTVSEIVGELIGTGVVE 59 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 E + +S GGRR + + + + IG++L L DL++ ++ + Sbjct: 60 EREIASSGGGRRPVLLGLKPDAGYVIGIKLTETRVVAVLTDLNAAIVQRATVAVANDDVD 119 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 T+ + + +F + L G++D SG + + + + L LE Sbjct: 120 TVVRTVAAVVKRFTAKVGPVYGVGV----GLAGMIDRASGVVRHATYSDWHDVDLAALLE 175 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 +R + V +D+ +L E +FGA + D +V + RG G G++ +GR++ G G G Sbjct: 176 KRTGLPVVVDNDVNTLVANEQWFGAGRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGGAG 235 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E GH +V P G C CG GCLE++ AI +I+ Sbjct: 236 EFGHTKVAPDGPVCACGARGCLESLIGEPAIL--------------TATGTSSIEQAVDL 281 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD A V ++VGR LG + +NL NP+ IV+AGE T A +LLP ++ + Sbjct: 282 ARGGDDAARAVFDHVGRTLGTAVGNLVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQAV 341 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQH 402 + +L VV + D + A GA L + L Sbjct: 342 FDGLQRDLEVVVDDWDDEAWAQGAAGLFLGELFQPNLRPD 381 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 356 bits (915), Expect = 9e-97, Method: Composition-based stats. Identities = 108/390 (27%), Positives = 187/390 (47%), Gaps = 13/390 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK-EVDQQA 69 N LV+++NSA ++ +I Q IS+ ++++ S + PA+++ I L G+++ + D Sbjct: 7 NSALVRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRRDTDAPT 66 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 GR ++ + R + G+ + I + + A+ P + A Sbjct: 67 GRAGRPTTALSLDPRAGYLAGISVEPDAIRIVISTIDGTACADLAVP-GSTAPEAAIAAA 125 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + + + S + L+A V +P LV G+I + P+I + + E L ++ KV Sbjct: 126 RSGVTAALRSLRATRATLLAAGVAMPALV-STGGRIVFAPNIGWRDLDVAENLAQKLKVP 184 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D+++ ALAEH FGAS+D D + V G G G+ G ++ G +G GEIGH++ Sbjct: 185 VRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHGLAGEIGHMK 244 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + P G C CG GC E + AI + + ++ KA GD Sbjct: 245 IVPGGRACGCGGQGCFEAYVSEKAILSDLAAR---------GHGARDVASVRKACEAGDP 295 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 +A V+ GRHLG +A IN+ +P++IV+ G + + LLPA + AL A Sbjct: 296 VARAVLAEAGRHLGLALANLINIISPRRIVLGGSLAQLAPFLLPAAMETLEANALAAIYR 355 Query: 370 NLPVVRSEL-DHRSAIGAFALVKRAMLNGI 398 ++ +V SE+ +A+G AL + L+ Sbjct: 356 DVEIVVSEMSGSAAAMGGIALALQQFLDDP 385 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 115/399 (28%), Positives = 180/399 (45%), Gaps = 12/399 (3%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 + V+ N AAV + P SR IA + L A+VT I +LI + L +E + Sbjct: 17 PHTADHTDVRATNLAAVLGFLRANAPCSRAAIASGTGLNKATVTSIVGELIAQRLARETE 76 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY--PLPERTQQT 124 Q + GR A +V + + AIG+ +G T +D + L H P PE + Sbjct: 77 QTQNHVGRPATLLVLDGSAYAAIGMEVGVRGLTAIAYDSAGGQLLRWHRSGPGPEASPAK 136 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 AL + I + R+++ ++V PGL+D D G + + + L L Sbjct: 137 TIAALAALARRAISAVHSSGRDVLGLTVGAPGLIDHD-GSVVLAAGLGWRDVPLRSDLIA 195 Query: 185 RFK---VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 V +D ALAEH +G D I + G GAG+I +GR G +G Sbjct: 196 ALGRPAFPVMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLRGHHGY 255 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 VGEIGH++++P G C CG GCLE +A AI R+ + + + + Sbjct: 256 VGEIGHLRIQPDGPVCGCGRRGCLEAVAGMPAILARL-----EPADAPETDPQLRTEQLV 310 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + A +GD+ + + VG LG+ I++ ++L +P+ +V+ G + L+PAIE + Sbjct: 311 RRAEEGDTATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGRWLVPAIEQELAD 370 Query: 362 QALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGIL 399 AL VV S H + IGA A + +G L Sbjct: 371 GALVTVSGRCRVVVSTFGHDATSIGAVARSLDRLDSGRL 409 >UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK-family transcriptional regulator) n=2 Tax=Proteus mirabilis RepID=B4EVY3_PROMH Length = 403 Score = 355 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 225/398 (56%), Gaps = 1/398 (0%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-Q 67 ++D VKQ N V+RLID++GPISRI +++++ LAPAS+TKITR+L+E LI E + Sbjct: 5 PSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKATLAPASITKITRELVEAHLIHETEFP 64 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 GR A+ + E++ + + +R+ +L +L ++++ E+ + P++ H Sbjct: 65 GLGFRGRPAVGLKLESKGWQFLCIRVNNGSLLFSLRELDNQLVVEDTFDFPKQNSDAFLH 124 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L AI F YQ ++ L AIS+ + +VDP SG I+ P+ +++ L + ++E+ Sbjct: 125 HFLAAIDTFFQRYQSRVERLTAISITMNAIVDPISGVIYSSPYYAIQDIPLADKIQEKTG 184 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 V F+ H + + +AE +GA+++ D + + + GAG+++NG+ + + EIGH Sbjct: 185 VAVFLQHSVTAWTMAESLYGAAKNNTDILQIVIDDIVGAGVVTNGKTLHSNSHSAVEIGH 244 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 +V +C+CG GCLET + + ++ +L ++ S + T++T+C A G Sbjct: 245 TKVIDSQTQCYCGAKGCLETEISIPQLIKKAQHLAQENPTSILNQYPITVETLCDAVLIG 304 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D A ++I V + LG +A+ +N+FNPQKI+I + A L P I S I L + Sbjct: 305 DKQALDIINLVAQRLGFILAVMVNIFNPQKILIGSPLCRAKSALFPLILSSIQHHVLPRY 364 Query: 368 RTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 NL + +EL ++ + A +LVK A+ NG LL L++ Sbjct: 365 AHNLVIEETELRNKGTLPAASLVKEALYNGSLLLELMQ 402 >UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF86_9FIRM Length = 381 Score = 354 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 96/397 (24%), Positives = 171/397 (43%), Gaps = 23/397 (5%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 GN +L++ +N+ +V R I +G ISR IA + L A+V+ I + L++RG+I E + Sbjct: 3 TGNQELIRDINTQSVLRTIITHGAISRASIASELGLTKATVSAIVQVLLDRGIIFEAESS 62 Query: 69 ----ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 GR+ I + + + + L + T+ +L +P PE+T + Sbjct: 63 DTAPEGRKGRKPIFLQLNKDCGYVVAIDLATENITLMTANLLGGNCRLTQFPTPEKT-EL 121 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L L I + I++ + L+ I++ + G+V + I ++P+ + V L + Sbjct: 122 LLPLLKERIDRAINALPKTRYGLLGIALGIHGVVHHNK--IIFLPYSSFGDIDFVSRLGD 179 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + V + ++ AL E D + + + VH G GAGII ++ G+NG GE Sbjct: 180 IYGVPVVMENEANLSALGEWAH--CHDTNEMLYISVHSGIGAGIIMKNQLVKGKNGYAGE 237 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GH +E G C CGN GCLE A+ A+ + S + + Sbjct: 238 FGHTIIEVDGRPCPCGNHGCLEQYASERALFAEL---------SAQKGYPVNAEVYGRLY 288 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 +GD A ++ +++ I +N FNP IV+ +T + + I Q Sbjct: 289 RQGDPAAVRAMQQFIKYMSVGINNLLNTFNPDIIVLNSSLT----MCHAGLCDDIAAQLH 344 Query: 365 KAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGILL 400 + +V S L + +G L++ L + Sbjct: 345 NNMKDYCRLVPSTLQDTAVLLGGVYLIRERFLYPNRI 381 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 354 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 178/389 (45%), Gaps = 3/389 (0%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + N ++LN + V L+ ++GPISR +A S L +V+ I +L++ G +++ Sbjct: 4 ANDKTANNRTPRELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRD 63 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 V S GGR A + + +G+ +G + + D ++ A P R Sbjct: 64 VGT-ESRGGRPARLLEFNDDSAAFLGIEIGVEQTAVAVADARGRLRARLEQPTVLRDPHR 122 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 ++ + + + + L +LPGL++ SG P++ E + + L Sbjct: 123 TVRDIVELLPKVLQLSGVPRKRLRGACAVLPGLIERPSGVCVLAPNLGWERFPVRAELSR 182 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 ++ V + ++ A+AE GA++ + + V G GAG++++GR+F G G GE Sbjct: 183 ALRMQVPVYNLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYSGE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IGH +V G C CG GCLET A+ A+ + + Q + + AA Sbjct: 243 IGHCRVADDGPPCGCGRRGCLETFASVMALRRAAEAASARSPQLAALARPHAVSAVASAA 302 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD A + G L + IA+ +NL NPQ IV+ GE+ A +LL + + A+ Sbjct: 303 LAGDESARAIFHDAGAQLARGIAVLLNLLNPQLIVLGGELLAAPDILLAGVRDGLPRHAV 362 Query: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRA 393 + ++PVV S L + + L+ R Sbjct: 363 RGA--DVPVVASPLGSEAGVLGALLLARE 389 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 354 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 103/396 (26%), Positives = 187/396 (47%), Gaps = 10/396 (2%) Query: 8 QIGNVDLVKQLNS--AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + +V +++ N +++ + Q G S ++A+ + S T I L+ G I E Sbjct: 7 EPSSVIDIRK-NRIRSSLLLHLYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWITET 65 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 + GR + ++ + + + + RHD + +FDL ++++ + + Sbjct: 66 GTGPARAGRPPVLYGLNSKKYLTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDDSANF 125 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 L + F+ S +L I V +PGL++ G ++ LV L+E Sbjct: 126 LEELFASTDDFLKSNNISHSKLWGIGVSMPGLINSSQGINLTYLNLTPPGVPLVTYLKEH 185 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 F + + +D ++ + EH FG + D + + + G G GII NG +F G +G GE+ Sbjct: 186 FDLPVCLFNDTKATTIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGASGFAGEL 245 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKT 299 GHIQV+P G CHCG GCL+TI + A+ ++ + G + + L+ Sbjct: 246 GHIQVKPDGMLCHCGKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLEQLETSH 305 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 I +A + GD + +++ VG LGK +A A++LFNP+ I++ G + EA + IE I Sbjct: 306 IIEAVHAGDEFSIDLLSTVGTELGKGLATAVHLFNPEVIIVGGLLAEAGPFISNPIEQAI 365 Query: 360 NTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAM 394 N L F+ L + S+L ++ +G A + + Sbjct: 366 NKYCLSDFKNPLSIHISKLGSKARLLGTQAYLFDNL 401 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 93/401 (23%), Positives = 168/401 (41%), Gaps = 9/401 (2%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGP-ISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + N+D V N V I + +SR+++A + L+ +++ ITR+L++ GL++E Sbjct: 11 RRGTNLDRVGGFNDTVVLDAIRRAEQRLSRVELAAATGLSGQAISNITRRLLDAGLVREA 70 Query: 66 DQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQ 123 +Q S G G+ + E +A+GV L T+ L DL+ +V+A P Sbjct: 71 GRQKSAGLGKPRTLLELEPTGQYAVGVHLDPAVVTVVLLDLTGQVIARRRAQTPAADGPD 130 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 L + + I + ++ + + PG +D D G + P++ L +AL Sbjct: 131 VLIAGIAATVEDVIAEAGVPRQRVVGVGIAAPGPIDVDRGVVVDPPNLTAWHLVPLRDAL 190 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 +R + + D+ + A AE + G + + G GAG++ + G + NV Sbjct: 191 RDRTGLPVLLDKDVTAAASAEKWAGGPNGRGSFVFFYLGTGIGAGLVIGDEVVRGSSSNV 250 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD---DCTIKT 299 GEIGH+ V+P G C CG GC+ + + Q+ ++ + D Sbjct: 251 GEIGHVIVDPEGPLCFCGRRGCVGESSRPRYLVQQAVDAGVVARGIDLDDRHAVDVAFTA 310 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESC 358 +C AA G A E++ + + K + NL + +++V G AI Sbjct: 311 LCTAATGGPGAAREIVTALAERIAKVVEDIANLLDLERVVFGGPHWDRLAPFFGDAIRET 370 Query: 359 INTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNGI 398 + + L V + L A+GA +LV + Sbjct: 371 LEERFLVRSVHPFTVTGTALGADVGAVGAASLVLDHTFSPN 411 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 353 bits (908), Expect = 6e-96, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 163/400 (40%), Gaps = 15/400 (3%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MT + V + I G ISR IA +PA+VT L++ G Sbjct: 1 MTSDFAPAGT--LDARDATRLRVLQCIRSAGTISRTDIARALDSSPATVTSACGALLDAG 58 Query: 61 LIKEVDQQAST---GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL 117 LI+E + S GR + + F G+++ R + + D + PL Sbjct: 59 LIREERRMPSENVQRGRPRVMLQINGEAFAVAGLKVAREAIVVMIVDFRGDEIGSFVSPL 118 Query: 118 PER--TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVEN 175 L + A+ + + +S+ +PG V+ ++G +H+ + N Sbjct: 119 EASCMDPDGLVQEVRRALDAACARHGLDTARIAGLSLGIPGFVNGETGFMHWSSSVTERN 178 Query: 176 WGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIF 235 + F+ +D +A AEH FGA + + ++V + G G GII NG ++ Sbjct: 179 VDFAPLFRKHLPCPTFLDNDANLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGELY 238 Query: 236 IGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC 295 G G E+GH++V+ G C CG GCLE + A+ + + Sbjct: 239 RGERGCGAELGHMKVQFGGALCQCGQRGCLEAYVGDYALVR-------DTSTGQQSDAAK 291 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 +I+ I AA GD LA EV++ + LG +A +NLF+P+ IV+A D A+ Sbjct: 292 SIQDILHAARNGDRLAREVLDRASQILGVALANLVNLFDPEHIVLARSRPPFDHPYTEAM 351 Query: 356 ESCINTQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAM 394 + + ++ + LD A GA AL + Sbjct: 352 LTSLRRNTVQVDAPLPEITVRNLDEMMWAKGAAALGIEMV 391 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 353 bits (907), Expect = 7e-96, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 173/385 (44%), Gaps = 10/385 (2%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 + V I G ISR+ IA+ + L A+V+ + R+L++ L+ E+ + STGG+ + + Sbjct: 15 SVVLDAIRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLVIEIGRAESTGGKPRVLLE 74 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDS 139 +A+GV L T + +L+ +A P P + + + + I ++S Sbjct: 75 LNPTARYAVGVHLDHGAITYAVTNLAGAPVARLARPGPGNASPADVVIRMADEINMLVES 134 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRS 198 +L+ + ++ PG + +G P ++ E++ L L + ++ + +D + Sbjct: 135 IGIARDKLLGLGLVSPGPLSSRAGMHLTPPFMRSWEDFPLDTQLADVAQLPVLLENDATA 194 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCH 258 A+ E++ G +Q E + + G GAGI+ NG + G +GN GEIGH G C Sbjct: 195 AAIGEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTSGNAGEIGHTCANIDGPECW 254 Query: 259 CGNFGCLETIAANAAIEQRV----LNLLKQGYQSRVPLDDCT--IKTICKAANKGDSLAS 312 CG GC E +A AA+ + + T I +A+ GD+ + Sbjct: 255 CGARGCFEALAGPAAVVNEAYSDPRIVTAAALDTLGDHTPITQRFAAIARASRMGDTPSR 314 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPAIESCINTQALKAFRTNL 371 +++E R++G NL + + +V+ G A + +PAI + + Sbjct: 315 QLLERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYVPAIRDTLAASFFARDNHAV 374 Query: 372 PVVRSELDHRS-AIGAFALVKRAML 395 V S+ + AIGA ALV +A Sbjct: 375 HVQLSQSAETAPAIGAAALVLQAQF 399 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 353 bits (906), Expect = 8e-96, Method: Composition-based stats. Identities = 98/412 (23%), Positives = 177/412 (42%), Gaps = 28/412 (6%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 QA + L + + + + +SR + + LA +V+ + LI GL Sbjct: 5 AGDTQAAPQTPINLHNLGRVRILQALTSHARLSRADLVRHTGLARTTVSSVIFDLISAGL 64 Query: 62 IKEVDQQAS----------------TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDL 105 ++E GR + + E +A+G+ +G + D+ Sbjct: 65 VRESPDVRENSDTAAAAAAGAAPGQRTGRPPLLLRLEPEAAYAVGLDVGHDHVRAIVTDV 124 Query: 106 SSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGK 164 + L + + + IA+ + +++ + + + VD +G Sbjct: 125 VGTPRWDRTEALAVDDDPRRALDTAVRLIAEAVKDTAVPPHKILGLGLGIACPVDKTTGG 184 Query: 165 IHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRG 223 +H + + L ER + + +D + LAE FGA+++ + + VR+ G Sbjct: 185 LHAEGIMPGWVGTRPADDLAERTGLPTQIINDANAGVLAERRFGAAREATNVVYVRLAAG 244 Query: 224 TGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK 283 GAG++S GR+ +G +G GE+GH+ VE G C CG+ GCLET+A+ AAI + Sbjct: 245 IGAGMMSEGRMLLGHHGLAGELGHVMVELNGAVCRCGSRGCLETVASPAAIAGLLARSWG 304 Query: 284 QGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE 343 Q S + + +GD A V+E G +G+ ++ A+ L NPQ +VI G+ Sbjct: 305 QPADSI---------DLPELLRRGDRGALRVVEDAGEAVGRALSAAVQLLNPQLVVIGGD 355 Query: 344 ITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAM 394 + EA + LL I + + + L +V S L + + GA ALV ++ Sbjct: 356 LAEAGEALLEPIRRTLRRGTMGSLNQRLRIVPSTLGDSAGVRGAAALVLDSV 407 >UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KTE3_CLOPH Length = 381 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 168/387 (43%), Gaps = 23/387 (5%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 G+ +L++ +NS V I Q PISR I+++ L A+++ I I L+ E+ + Sbjct: 4 GSKELIRDINSKLVLETIIQNEPISRAAISKKLGLTKATISAIVSDFINDKLVVEIGSED 63 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 + GR+ I + + +AI V + + + DL + + + P + L L Sbjct: 64 TGLGRKPILLSFHKKAGYAICVDIEVSRISCMISDLKGEQRSVKQIKTPSES--NLVPVL 121 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 ++ I Y++ LI I++ + G+V + + + P+ + L E L F V Sbjct: 122 IDLIQSMESEYEKTPYGLIGIAIGIHGVVHQNE--VLFTPYYNLNGINLSEQLGSYFGVP 179 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 F+ ++ AL E + + + +H G G GII N +++ G +GN GE GH Sbjct: 180 VFLENEANLSALGEKAYLP-ETYTSLANLSIHSGVGLGIILNKQLYTGYHGNAGEFGHTI 238 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 V G C CGN GCLE A+ A+ + D ++ + A K + Sbjct: 239 VVMNGRTCPCGNQGCLEQYASERALLKEYSE-------------DASLDDLLLAYEKKEP 285 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A V+E+ ++ + N +P+ I+I T A L I +N + + Sbjct: 286 KAMGVMEHFVNYMAVCVNNLQNTISPEIIIINSAFTNAYPELAEMIAKKVNNKLV----D 341 Query: 370 NLPVVRSELDHRS-AIGAFALVKRAML 395 +P++ S L S +G ++ + L Sbjct: 342 KIPLIASNLKDHSILLGGITVLVKNFL 368 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 176/392 (44%), Gaps = 4/392 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++ N V R I P SR ++A + L+ A+V + +L++ +I EV + S Sbjct: 7 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMITEVGFEDS 66 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHA 128 GGR + IGV + + LFDL+ VLA + E + + Sbjct: 67 AGGRPRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGENLPEQMVGH 126 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + A+ + + ++ + V +PG VD +G Y P+ + L++ L E Sbjct: 127 VAAAVGSVVAQAGIEGARVLGVGVSVPGQVDRATGISEYAPNWDWHDVPLLDLLTEHIAY 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ + +R++A+AE +FGA++ D+++V + G GAG++ G + G + + GE GH Sbjct: 187 PLYLDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGVSNSAGEWGHT 246 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G CHCGN GC+ET I + L + TI + + + D Sbjct: 247 TIVLDGRLCHCGNHGCVETYVGAPGIMLNLRELSPRSTLLHPEDQTATIAALARGVARQD 306 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAF 367 +A +V+ R+LG IA +NLFNP+ +V++ + A + L+ + + AL Sbjct: 307 PVAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAALGEPLVAEVREAVARHALPRP 366 Query: 368 RTNLPVVRSELDHR-SAIGAFALVKRAMLNGI 398 +V S + + +GA L + Sbjct: 367 MAATDIVLSLIPTDPACLGAATFALEGALQSV 398 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 99/317 (31%), Positives = 161/317 (50%), Gaps = 11/317 (3%) Query: 86 FHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKL 144 A+GV LG + L D KVL + P E+ + + + + + I ++ K+ Sbjct: 2 RKAVGVDLGGTKINVLLVDDQGKVLGRDKQPTESEKGKDHVINKIKSMIDNVLNQAGLKI 61 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQ--VE-NWGLVEALEERFKVTCFVGHDIRSLAL 201 E+ I + PGL+D D Y P++ + L + LEE F V ++ +D+ +A Sbjct: 62 TEIEGIGIGFPGLMDRDKKTTLYAPNLGDEWKKEVLLGKELEETFNVPVYLENDVNLIAW 121 Query: 202 AEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGN 261 AE GA + + I V + G G+GI+ NG+++IG +G GE GH V P G C CGN Sbjct: 122 AEWLVGAGRGTKTMICVALGTGIGSGIVLNGKLWIGAHGMAGEFGHTTVLPDGPVCGCGN 181 Query: 262 FGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVI 315 GC+E IA+ IE+ ++L Q S + LD+ T+K I +AA +GD LA ++ Sbjct: 182 RGCIEAIASGTGIEKYAKSILPQYPNSLIWELCNGNLDEVTVKIIYQAAERGDKLAVDIF 241 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 Y G +LG +A +++ +P+KIVI G + + + ++ + L +FR + Sbjct: 242 NYAGYYLGIALANYVHIIDPEKIVIGGGVANVREYIGKPMKEEFYKRVLPSFRDKVTFSW 301 Query: 376 SELDHRS-AIGAFALVK 391 +EL + IGA LV Sbjct: 302 AELGEDAGGIGAALLVL 318 >UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F498_ACIC5 Length = 402 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 96/391 (24%), Positives = 179/391 (45%), Gaps = 16/391 (4%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 +A++ + + +++N + +I PISR +A S L ++V++I QLIE I+E Sbjct: 7 TRAELASSETARRINRDILLEIIRARQPISRADLARVSGLQRSTVSQIIEQLIEELWIRE 66 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 GRR +V + L A I + DL+ +VL+ L Sbjct: 67 GAVARLPRGRRPTMLVLNED-VVVLTADLHPRKAAIAVIDLNGRVLSHAELSL-SHDPAK 124 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + A+L + + ++ K + V LPG VD + ++ + P++ ++ L +AL + Sbjct: 125 VATAILECMRRLRQAHPEKSFR--GVGVSLPGRVDSQTQRLIFAPNLHWPDFDLRQALAK 182 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 ++ + + + +E +FG Q ++++L+ V G G GI++NG++ G+NG GE Sbjct: 183 GLRMPVEMENAANACLTSELWFGRMQGVQNAVLITVSEGIGGGILANGQLVTGQNGMAGE 242 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GHI ++P G RC CG GC ET A+ A + S + + Sbjct: 243 FGHISLDPRGPRCGCGQRGCWETFASCKAALRHYQE-------SSGASRRIAYQDLLALG 295 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 + + A + R +G+ + + I +P+ ++IAGE+T A ++ PA+ + Q L Sbjct: 296 AEKNPHAVGALTEQARQIGRGLRLVIASLSPELVLIAGEVTSAWNLVAPALRKEMEAQWL 355 Query: 365 KAFRTNLPVVRSELDHRSA--IGAFALVKRA 393 + D +A GA A++ + Sbjct: 356 GGTMPRIE---PTFDSDAARLRGAAAMLLQR 383 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 179/393 (45%), Gaps = 13/393 (3%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + Q + ++V+ +N V L+ PISR +A S L ++++ I QLIE + E Sbjct: 6 KRPQGASSEVVRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVLE 65 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 GRR + IGV + T+ L D + K ++E P + Sbjct: 66 GPTGRLPRGRRPTFLRLNDD-RVIIGVDIRPIQTTVALADANGKFTSQEVMSTPG-DPKL 123 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 L+ AI + + + K+ + I + LPG D S ++ + P+++ + + + + E Sbjct: 124 ALTQLIAAIKRIKSTCRGKM--IEGIGISLPGRFDHSSNRLVFAPNLKWTDIDIRDPIVE 181 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + + + + + LAE +F +C + ++V V G G G+++NG + G +G GE Sbjct: 182 QTGLDVELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGMAGE 241 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 GH+ ++P G C CG+ GC E A+N A + L + + + A Sbjct: 242 FGHVPLDPTGPTCGCGSRGCWEIFASNRAALRYYLE-------TGSTETGLSFTDLLSRA 294 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 ++GDS A + ++ + +LG+ + + + P++IV+ G++T + + IE+ I Q L Sbjct: 295 DQGDSRAEKALDMMAHYLGRGMRMIVAGLAPERIVVVGDLTRSWQRFGSVIEAEIQAQVL 354 Query: 365 KAFRTNLPVVRS-ELDHRSAIGAFALVKRAMLN 396 +V + E G ALV + + Sbjct: 355 PGGV-VPKLVPAFEDGMARLRGTVALVLQKHFS 386 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 161/319 (50%), Gaps = 9/319 (2%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLR 145 + +GV LG L D K++A++ P R ++ + ++++I + Sbjct: 4 YYVGVDLGGTKILTALADARGKIVAKKKLPTEARKGEEKVIQNIVSSIDAVLQEKGLSRE 63 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 ++I + V PG ++ G I+ P++ N + + LEE + + +D + AL E + Sbjct: 64 DVITLGVGSPGPLNTQEGIIYLAPNLGWRNVHIKDILEEETGIPVILENDANAAALGEKW 123 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 FGA QD ++ I + V G G GII N +IF G N GE+GH+ +EP G C CGN GC Sbjct: 124 FGAGQDVDNLIYITVSTGIGGGIIINKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRGCF 183 Query: 266 ETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVIEYVG 319 E +A+ AI + +K+ + + + I +AA +GD +A ++ + G Sbjct: 184 EAVASGTAINKMGREAVKENKATLLMELSGGDPEKIDGSLIARAARQGDEVARKIWDKAG 243 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 +LG +A +N+FNP+ I++ G + A +++ ++ + AL++ ++ + ++EL Sbjct: 244 YYLGIGLANLLNIFNPEMIILGGGVMNAGDLIMEPMKKSLKDHALESAFNSVEIRQAELG 303 Query: 380 HR-SAIGAFALVK-RAMLN 396 + IGA A+ +L Sbjct: 304 NDTGVIGAVAVAMGDRLLE 322 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 351 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 165/391 (42%), Gaps = 11/391 (2%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 G+ + +N + L+ + GP SR IA L+PA+VT + L+E G++ E Sbjct: 1 MKLKGDQTTARAMNRRLILNLLRREGPRSRADIATVIGLSPAAVTFVVADLLEEGIVIEG 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 GRR I + + A+G +L DL++ +A L + Sbjct: 61 KTVPGLTGRRPIPVDINYEHALAVGFKLMVDSVECVATDLATNPVAAMRVSLGGHDPDKV 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 L + + + + R +L I + +PG+++ + + +N L + R Sbjct: 121 ADLLASTVPELVKLAGRPNAKLAGIGISMPGVINHEQTACVRSYRFKWDNVPLASLVASR 180 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 V ++ D + A+A+ FG + + ++ V G ++ +G+++ G NG G+ Sbjct: 181 VHVPVWLEDDTNAYAIAQQLFGLGRQHRNMAVLAVGVGISCALVIDGKLYRGANGAAGKF 240 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH E G C CG GCL + ++ +R + ++ + + A Sbjct: 241 GHTLYEENGRLCECGKRGCLMAYHSEISMLRRWREATGR--------EELGLPELSAALA 292 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 GD+ A ++ GR +G +A +N+ +P+ IV GE L + ++ + Sbjct: 293 SGDTTALALVADSGRGIGTALANLVNITDPEVIVAGGEAVSLGDPFLTPLREALSARTF- 351 Query: 366 AFRTNLPVVRSELDHRSAIGAFALVKRAMLN 396 RT P++ D+ A GA ALV + + + Sbjct: 352 --RTAPPLLPDWEDNSWARGAAALVTQKIFD 380 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 350 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 174/384 (45%), Gaps = 4/384 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 D++K N V R I Q G +SR I++++ L+ AS+T IT +L+E LIKE S Sbjct: 4 TRDILKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRLLEANLIKENRYGKS 63 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 GGRR + + ++ AIGV++G + DL + E+ PL + + + Sbjct: 64 KGGRRPVLLGINEKHSWAIGVKVGYLYLYFVVTDLLGTPVLEQKIPLNTASYNAVVEKIA 123 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 + + + + R+ + I V + G VD + G + ++ N + LEER K Sbjct: 124 DFVNTIVKIPEYVDRKFLGIGVAVSGSVDSEHGIVKSSYILEWGNVPIGPVLEERIKAPV 183 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 V +D+ S A+A + G ++ ++ I + + G G +I G+++ G G GEIGH+ V Sbjct: 184 LVYNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGKLYTG-RGGAGEIGHMTV 242 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLK---QGYQSRVPLDDCTIKTICKAANKG 307 G++C CG++GCLE + A+ R+ +S + +D I I KA Sbjct: 243 ICDGKKCSCGSYGCLEAEISFNALVDRIKKKTNIESLKNRSCLTTEDEAIHYIHKALQID 302 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 E + + LG I IN+F P ++I GE E + L + Sbjct: 303 REAVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFLKKAILIARENSFGDL 362 Query: 368 RTNLPVVRSELDHRSAIGAFALVK 391 ++ + ++ + + L Sbjct: 363 GDDVVIDIDDMGEVAWVQGVILNL 386 >UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9KEZ9_BACHD Length = 388 Score = 350 bits (899), Expect = 7e-95, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 164/390 (42%), Gaps = 15/390 (3%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +K++N A+ I + ISR +++ + L +V+ L+E LI E S+G Sbjct: 7 TFIKKMNRRAILEKIIEKQEISRSDLSKITNLNKVTVSSQVASLLEEHLIIEKQYAESSG 66 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I + +G+ L T L +L V+ +E + L + + +++ Sbjct: 67 GRKPILLTLNENAAFTLGIDLDIKTLTFMLCNLKGAVIKKEQWKLANVDFDDVVNEMISL 126 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I F+ ++ I + + G+VD D I + P N + + +E+ + V Sbjct: 127 IQSFLKDIPASKYGVVGIGIGIHGIVDNDE-TIAFTPGHHWSNVNVKQPIEQAVNIPVVV 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 + ALAE+ + + ++ + + G G G+I + I+ G +G GE+GH+ + P Sbjct: 186 ENSTNLCALAENVV-SDHEADNLLCISSFSGVGMGLIVHNAIYKGFHGYAGEVGHMIIVP 244 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G+ C CGN GC E A+ A+ Q + K+ + + GD Sbjct: 245 EGKPCRCGNKGCWELYASEKALYQEISESTKR--------EHVDRDVVLALIEAGDEETL 296 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 + ++ + + IN +NP+ IVI+ + LP IE I + Sbjct: 297 KKLDQFIYYFSLGLNNIINSYNPETIVISSGLM----PHLPNIEHKIQSHLHSKISHYKT 352 Query: 373 VVRSELDHRS-AIGAFALVKRAMLNGILLQ 401 + S L + A+GA + + L L+ Sbjct: 353 LKISNLGKEACALGACFIGIKQFLEINTLK 382 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 349 bits (898), Expect = 8e-95, Method: Composition-based stats. Identities = 103/388 (26%), Positives = 180/388 (46%), Gaps = 13/388 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + D +K+ N V+++I PISR IA+Q+ ++P +V++I +L E G + E ++QAS Sbjct: 5 DQDFMKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQAS 64 Query: 71 -TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHA 128 GR++ I +IGV L RH A I D+ VL + + T Sbjct: 65 AGRGRKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETADVTVTR 124 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + I + I R ++ I V LPG++D D+G +++ + +N GL E L+E + Sbjct: 125 IAETIEELIAECDIDRRRVVGIGVGLPGIIDVDAGIVNFSVQLGWKNVGLAERLKELTGL 184 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V ++++ ALAE G++ ++L+ G G+ +I G I+ G + GEIGH Sbjct: 185 QAVVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSAGEIGHT 244 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 V+P G C CG GCL+T ++ + TI+ + G Sbjct: 245 TVDPEGMMCDCGKAGCLQTYINIPSLLSEASKIKPVR----------TIEELFAERRAGT 294 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES-CINTQALKAF 367 AS +I+ ++ TI ++++NP ++++GE + + I C + + Sbjct: 295 RWASYLIDRALAYMAITINNVVSMYNPDSVILSGEFLDKFPEVYEEITDLCYSQYIWEPL 354 Query: 368 RTNLPVVRSELDHRSAIGAFALVKRAML 395 + + +VRSEL LV + Sbjct: 355 QDSFSIVRSELHEHGVTIGSGLVAQDRY 382 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 108/380 (28%), Positives = 167/380 (43%), Gaps = 15/380 (3%) Query: 37 QIAEQSQLAPASVTKITRQLIERGLIKEVDQ-----QASTG-----GRRAISIVTETRNF 86 +A + L+ ++++ I +L++ GL++E Q AS G GRRA + R Sbjct: 2 DLARELGLSRSAISSIVTELMDAGLVREAGQRVAGNGASRGAGGPVGRRATLLSLNARAA 61 Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLR 145 H + V LG A + L DL LA R L ++ Sbjct: 62 HLLAVDLGASHARVDLLDLRCTTLATRTAQHDILRGPAATYALLKELAQAVLEEAGVPRE 121 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 + A+ +PG VD +G + P++ + ++ LE + V +D ALAE Sbjct: 122 RVAAVGAGVPGPVDYATGCVVQPPNMPGWDGENVMAGLERVLDLPTRVDNDANLGALAES 181 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 FG + D I V+V G GAG++ GR+ G G GEIGHI + G GN G Sbjct: 182 RFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSGNPGS 241 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 LE+ AA + + G S +P D T+ + AN D LA V G HLG Sbjct: 242 LESYAAAQVLLETARARRAGGVPSTLP-DPLTLADLIAFANT-DPLARAVWAEAGHHLGV 299 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA- 383 I+ A+NLFNP +VI G + +A +V L A+ ++ ++ + S L + Sbjct: 300 AISTALNLFNPSAVVIGGRLAQAGEVFLHAVRESALSRTMRINADRARIDLSTLGEGAGV 359 Query: 384 IGAFALVKRAMLNGILLQHL 403 +GA A++ + L+HL Sbjct: 360 LGAGAMLLDHLFTPAGLRHL 379 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 348 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 152/308 (49%), Gaps = 3/308 (0%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT-LEHALLNAIAQFIDSYQRKLR 145 + IGV LG L D ++ + P + + ++ I + ++ + Sbjct: 5 YVIGVDLGGTKIAAALVDFKGTIICKYTLPTKAEEGEKYILDNIIKIIEKVVNFGGVCSK 64 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 ++ I + PG +D D GKI P++ +N+ +V L+ FK+ F+ +D + A+AEH Sbjct: 65 KIKCIGLGAPGPLDIDKGKIICTPNLPFKNFNIVSPLKNHFKMPIFLDNDGNAAAIAEHM 124 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 FGA + + + + V G G G I NG+I+ G N EIGH+ ++ G C+CGNFGC Sbjct: 125 FGAGKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCNCGNFGCA 184 Query: 266 ETIAANAAIEQRVLNLLKQGYQSRVPL-DDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 E +A+ AI + +K GY + + L + T K + K A GDS++ +++ +LG Sbjct: 185 EVMASGTAIAREAKKAVKMGYNTTLALYKNITSKEVFKEAQLGDSISQNILDTTLNYLGI 244 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA- 383 +A I +P+ ++I G +++ K++ I + + N ++ + L + Sbjct: 245 CVANIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCFGTVSKNTRILPALLGTDAGV 304 Query: 384 IGAFALVK 391 IGA AL Sbjct: 305 IGAAALAF 312 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 178/387 (45%), Gaps = 10/387 (2%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 + + + G + + + L+ VT LI G++K+ + STGGRR Sbjct: 23 KKIIISYLAEKGHATIADLCREMNLSIPKVTTSVTMLITEGVVKDFGKVGSTGGRRPNIY 82 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLA-EEHYPLPERTQQTLEHALLNAIAQFID 138 + +GV + I L DL ++ ++ P + + L I +FI Sbjct: 83 GLVPDSGFFLGVDVKHQHINIGLIDLQKVIIKITKYIPYQLINNKDALYELCRLIKEFIY 142 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRS 198 + +++ + + L G ++ ++G + + + L LE+ + V +D R+ Sbjct: 143 NTSIPKYKILGLGINLSGRINHETGYSYNFFNFYED--PLSTILEKELGIKTMVENDSRA 200 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCH 258 +A E G ++ ED + + + G G GI+ N +++ G++G GE+GH+ + C Sbjct: 201 MAYGEFSAGVVKEEEDVLFLNLDYGIGMGIMLNKKLYYGKSGFAGELGHVPLLNNEIICQ 260 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP---LDDCTIKTICKAANKGDSLASEVI 315 CG GCLET A+ + + ++ G + + L ++ I +AAN D L+ E++ Sbjct: 261 CGKKGCLETEASGQGLIRMFKTRVEAGSTTTIDKNKLGQLQVQDIIRAANNDDVLSIELL 320 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 +G LG+ IA+ IN+FNP+ IV+ G + E + + I+S +N +L + + Sbjct: 321 AKMGEILGRGIAMLINIFNPELIVLGGLLAETGEYIQLPIKSAVNKYSLSLMNNDTKLKL 380 Query: 376 SELDHRSAIGAFALVKRAMLNGILLQH 402 S+L + + L+ R LL+H Sbjct: 381 SKLGEEAGVIGSCLLIRN----KLLEH 403 >UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D084_HALOH Length = 378 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 179/393 (45%), Gaps = 18/393 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 Q GN+ L+K++N A + + + Q GP+SR + + + L+P +++ IT +LI+ GLI EV + Sbjct: 2 QRGNMKLMKKINRALIIQTLSQQGPLSRADLTKITDLSPTTISSITEELIQEGLIVEVGE 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S GGRR I + +F+ + V + + LF+L +V+ H + + L+ Sbjct: 62 GESKGGRRPILLDINPEDFYILSVNIAVDVMYVYLFNLKFQVINSVHDLIKKPVSPNLDS 121 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 L + + +++ + ++ + + G+++ + G I Y + + ++ L++ ++ + Sbjct: 122 QLKELVQKVVENSNIGKKNVVGMGIGATGIINKEKGLITYSASLGISDYPLLDKVKREYD 181 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 + +D AL E FG + + + + G GII + I+ G+ G GE GH Sbjct: 182 FPILLENDTNLAALGEKKFGCGRQLTNFFYIMIGSAIGGGIIIDNEIYRGKFGGAGEFGH 241 Query: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKG 307 I VE G C CGN GCL + I R ++ +Q + D+ Sbjct: 242 ITVEKDGPLCECGNQGCLNAVL-TPYITVRSREEFRKSFQEIIKDDNFDS---------- 290 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE-ADKVLLPAIESCINTQALKA 366 +L I LF+P+ IV+ GEI A + +E I +LK Sbjct: 291 ---CR--YHEFCEYLAMAITNYTKLFDPEAIVLGGEIARIAPERFYIDLEKYIKRMSLKG 345 Query: 367 FRTNLPVVRSELD-HRSAIGAFALVKRAMLNGI 398 + +PV+ S + + +G L + N + Sbjct: 346 MNSKIPVLPSSIRTNAVVLGGACLCFDNLYNNV 378 >UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PW32_CATAD Length = 396 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 168/386 (43%), Gaps = 5/386 (1%) Query: 14 LVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGG 73 +++ N V R ++R +A Q ++ A+ I +L GL+ E S GG Sbjct: 8 DLRRANRVEVMRSFYGGRTLTRGDVAAQLGVSVATAGTIIGELTAAGLLAETQSPRSGGG 67 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHALLN 131 R A + + +GV L +FD + + P+ + ++ +++ Sbjct: 68 RPASQLTMRAGAPYLVGVDLAETYVIAEIFDQAMTRVGHFQTPVAPTDDDPDSVVGHVVD 127 Query: 132 AIAQFIDSY-QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 ++ I + ++ + V LPG VD + G + P+ +R + Sbjct: 128 SVQGVIAALDGVSAADVAGVGVSLPGQVDREGGVSVHAPNWGWHGVPFTSLFHKRCDLPV 187 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 + + ++++ LAE FG + D +D+++V + G G G+++ GR+ GR GE GH + Sbjct: 188 LLDNPLKAITLAEMMFGEAGDHDDAVVVNLGTGVGLGVVAEGRLLRGRTNTAGEWGHTIL 247 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 G CHCG+ GC+E AA+ + ++ T+ + +A D + Sbjct: 248 VADGLPCHCGSRGCVEAYVGAAALLDLLTDVDPDSPLLVPGDQAATVARLAEAVASADPV 307 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAFRT 369 A +E R LG +A A+N+ NP+ +V+ G ++ A + LL A+E + +L Sbjct: 308 AVATLERFARPLGMALANAVNMLNPELLVVGGWVSAAFGEPLLAAVEPVVKQFSLAVPYD 367 Query: 370 NLPVVRSEL-DHRSAIGAFALVKRAM 394 + + S + D+ ++G L Sbjct: 368 AVTLAASRIADNPVSLGMAVLAFETF 393 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 105/395 (26%), Positives = 182/395 (46%), Gaps = 14/395 (3%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 T G+ ++Q N + + GP+++ +++ + L+ A+V+ + + + + GL Sbjct: 50 TKSLPRNPGSQSALRQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGL 109 Query: 62 IKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ER 120 + +S GRRA S+ + A+G+ +GR + + L +V+AE LP Sbjct: 110 VSTAPTTSS--GRRATSVRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLPLGH 167 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLV 179 A + + + ++ V +PG +D +G + + ++ Sbjct: 168 LAVEGVKAAADLLQGLLHDAGLPASAVVGAGVGIPGPIDSRTGTVIQGAILPEWVGINIL 227 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 E LE+ KV +V + ALA+ +G ED + V++ G GAG+I G + G Sbjct: 228 EMLEDALKVPVYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLILGGSPYYGNI 287 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGH + G C CGN GCLET+A+ A + + + SR T + Sbjct: 288 GVTGEIGHATISEQGLICRCGNRGCLETVASTAIMIELL---------SRGAPAPITTED 338 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 I + A + DS VI+ G+ +G+ IA NL NP+ IV+ G + E +VLL I + Sbjct: 339 IIRLAREKDSATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGEVLLEPIRRGL 398 Query: 360 NTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 A+ +V S + +R+ A+G ALV + Sbjct: 399 IRHAVPVVGETTHLVMSSMGNRAEALGGAALVFQH 433 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 347 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 111/393 (28%), Positives = 188/393 (47%), Gaps = 15/393 (3%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G A G+ +++ N + + + Q+G ++++++A + L+ A+++ I ++L+ G+++ Sbjct: 3 GRAATSGSQSSLREANRSLIVDTVKQFGGLTQVELAGATGLSAATISTIVKELLGAGVVE 62 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 S GRRA + R A GV++G + L D S V+AE+ PLP E Sbjct: 63 VRPT--SRSGRRAQMVTLARRVGLAAGVQVGHRSMRVVLGDFSHTVVAEQSLPLPHEHLL 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKI-HYMPHIQVENWGLVEA 181 T IA ++ + EL+ + + LP VD +G I + L Sbjct: 121 DTGLDRASLLIADLLERVGSPIDELVGVGLGLPAPVDGATGMISVRGVMRGWDGEHLAHV 180 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 + +R V +D ALAEH GAS++ DS+ VR G GAG++ NG ++ G G Sbjct: 181 MSKRLARPVHVDNDANLGALAEHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRGYAGT 240 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GEIGH+QV+P G C CGN GCL+T+ A+ + + T++ + Sbjct: 241 AGEIGHVQVDPQGAICRCGNRGCLDTVVGADALLASLRA----------SHGNLTLRDVI 290 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 A GD + ++ G +G +A NPQ +V+ GE+ E ++LL + + Sbjct: 291 ALATDGDRGCARLVADAGEAIGTVVAGLCAAVNPQVVVVGGELAETGEILLGPLRDAVRR 350 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 L+ L VV +EL R+ +GA V ++ Sbjct: 351 GVLRNQIAPLEVVAAELGPRAEVLGALVHVLQS 383 >UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJD3_BREBN Length = 392 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 175/399 (43%), Gaps = 13/399 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + GN LVK+LN V + + +G ISR I++Q+QL+ V+ + ++I+ GL++EV Sbjct: 4 PKKTGNSKLVKKLNKEEVLQQVVLHGQISRADISKQTQLSRPCVSALVDEMIQEGLLQEV 63 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQT 124 S GGR+ I + + + G + + D+ + LA L +T Sbjct: 64 GMGDSKGGRKPILLEYNYQAYAIAGAIFEGSTLDMAIADMKGEFLARYRKRLAQPANGET 123 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEE 184 + L + + + L+ + V L G+ SG + + P + + +E Sbjct: 124 VIEDLAAGLDRLLRESGIPRERLLGMGVGLQGVTQRGSGTVSFSPSTGWMGSPIQQTIEA 183 Query: 185 RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 R + + +D+ + L E+ GA + + + V G GAGII +G+ + G GE Sbjct: 184 RLGLPVIIDNDVNMMTLGEYVRGAGVGHTNVVYMYVGTGIGAGIILDGQFYRGSREAAGE 243 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 IG + + P+ R + G G ET + I+++ G+ S + I+ + + A Sbjct: 244 IGFMMIGPVHNRPN-GASGVFETHYSIPGIQEQAK-----GFLSDLQEGSSVIEELIRHA 297 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 + A +++ V RH +A I++ NP+ ++++GE+ D + I + Sbjct: 298 KH-NPEAEKLLADVYRHWAYGMANIISILNPEILILSGEMVHVDGEGVKQIHEWLREWVP 356 Query: 365 KAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGILLQH 402 + + ++ L R+ IGA V A LL Sbjct: 357 EVPN----LEKASLGERAGLIGAVHSVLEAFPFTRLLDK 391 >UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS614 RepID=A1SG81_NOCSJ Length = 400 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 169/395 (42%), Gaps = 17/395 (4%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE- 64 AQ G++ ++ N A V I+Q G +SR + ++ L+ ++V+ + QL+++G++ E Sbjct: 1 MAQGGSLGELRAANLALVISTIEQTGALSRADLMRRTGLSRSTVSSLVVQLLDQGVLVER 60 Query: 65 ---VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ER 120 GR I + G+ +G + L S ++ E L + Sbjct: 61 LDRGTPYKGRSGRPPILLELAALTGVVAGIDVGHRHVRVALARPDSTIVLERSVALDVDD 120 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + + + + + + +L ++ + +PG VD G++ Sbjct: 121 SPRESMDRVATLLDELLAESGHELSDVRGAGLGIPGPVDR-GGRMTSGILPTWRGLQPAA 179 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 L ER V V +D A E +GA+ D I V+ G GAG+I +G + G G Sbjct: 180 ELAERTGVIARVHNDAHLGARGELAYGAACGHRDVIYVKASTGIGAGLIVDGHLVTGATG 239 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 GE+GH+QV+ G C CG+ GCLET + + + + + T+ I Sbjct: 240 IAGELGHVQVDVNGVMCRCGSRGCLETEVSGPKLVELLQPAY---------DEQLTVPRI 290 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 + A GD+ A+ + GR +G+ +A N+ NP+++V+ G A L I ++ Sbjct: 291 LELAQSGDAGATRALNDFGRRIGRVLANIANMLNPEQVVVGGGFGAA-PALQAGIRDALD 349 Query: 361 TQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAM 394 + + V+ L R+ +GA A+ + Sbjct: 350 RYSQPTTAAAITVLGGALGERAEVMGAIAVALDPL 384 >UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea blandensis MED297 RepID=A4BDK2_9GAMM Length = 402 Score = 346 bits (890), Expect = 6e-94, Method: Composition-based stats. Identities = 138/407 (33%), Positives = 224/407 (55%), Gaps = 7/407 (1%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MT N+D VKQ N ++R+I +YG ISR Q+ E S LA SVTK+TR LIE+ Sbjct: 1 MTNTNPV--ANLDSVKQYNLMRLFRIIVEYGLISRTQLVEVSDLAAGSVTKLTRLLIEQN 58 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 L+ EV QQ S GR+A+ + +T + + R R + L DLS +L E PL Sbjct: 59 LVHEVAQQQSERGRKAVLLAPKTDDIQILAARADRQHLYVGLCDLSGNLLQREAEPLNAD 118 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + L ++ F+ ++ ++R ++ I V +PGLVD + G +++MPH+ V L + Sbjct: 119 NEDEFVAQLTRSLRHFLTTHADQVRNVVGIGVTMPGLVDANRGIVNFMPHVPVHELPLAD 178 Query: 181 ALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNG 240 + + ++ C++ ++ALAE GAS +S+ + VH G GAGII N ++ G Sbjct: 179 IITDALEMPCYINSFASAMALAEKQIGASFHARNSVFIEVHNGVGAGIILNNELYSGT-- 236 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 VGEIGHIQ++ LG+ C CGN+GCLET +++AI + Q QS TI+ + Sbjct: 237 GVGEIGHIQIDRLGKPCICGNYGCLETEVSDSAIVEHFNQR--QALQSVDTERAETIQDV 294 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 +AA + + A V++ H+G +A NLF P I++AG +T+A ++ P +E + Sbjct: 295 LQAAGELNENALAVLKEAAAHIGTAMATVANLFRPDSIILAGAVTQAWSLIHPVLEQQLK 354 Query: 361 TQALK-AFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLEN 406 T++L+ + ++RS++ +ALV++ +L G + L + Sbjct: 355 TKSLQVRGLKPIELLRSDIYDSPWYSGYALVRQGLLEGDIFHTLFTD 401 >UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5EFJ1_9FIRM Length = 383 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 167/391 (42%), Gaps = 17/391 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 +I ++ N + + I ISR +I+E++ L A+V+ I ++ + L++E Sbjct: 2 KISQTKDIRSANRLTIIKHILNKKQISRARISEETGLNKATVSTIVKEWMSLKLVEETTM 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 S+GGRR I + + + I + +G + L DL++++++ + P+ ++ + Sbjct: 62 GDSSGGRRPIILTLAAKAGYCIAIDIGARRLGLILTDLNNEIISRQSIPIEKQAFSHVYQ 121 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + AI + I LI IS+ + G++D D G I ++P +Q N + LE+R+ Sbjct: 122 QIYIAIDRMIREIPPCPYGLIGISLAVRGIIDLD-GVIRFIPKLQWHNIDIKSLLEQRYH 180 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 V ++ +D A E + + + G+ISNGR+ G G +GH Sbjct: 181 VPVYIDNDGNLAASMESRLHPQYEELTVLCLT--DVISCGMISNGRLIRGYLGFANAVGH 238 Query: 248 IQVEP-LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 + ++C CG +GC E ++ + L+ + I + K Sbjct: 239 HTINIQETKQCSCGKYGCWEQYCSDQYLLDEANLHLETPLE--------DIDGFIELVRK 290 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 + LA +++ ++L ++ I N + I++ + ++ L+P I I + Sbjct: 291 QNPLALGILDTYIKNLAIGLSNIIFFVNCEMIILNSHLIQSLPYLMPEIMKDI----ILP 346 Query: 367 FRTNLPVVRSELDHRSAIGAFAL-VKRAMLN 396 ++ S L + + I +L Sbjct: 347 ITHTQEILISTLGNEAPILGASLKAIEEFFE 377 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 95/403 (23%), Positives = 171/403 (42%), Gaps = 20/403 (4%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 G+ +++ N A V + GP+SR +A + L A+V+ + +LI GL Sbjct: 17 AGPGRGLPDTQQGMRRRNLARVMHTVSAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGL 76 Query: 62 IKEVDQQ-ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY--PLP 118 ++E+ + GR ++ R IG +G + DL +V + Sbjct: 77 LEELGPERPGRVGRPGSALAVSGRGPAGIGAEVGVDHLAVCAVDLRGQVRSRAVRYGANR 136 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL 178 R+ + + L + ++Q + + + ++V +PGLV D + P++ + L Sbjct: 137 GRSPEPVIAELASLVSQVVAEGEGEGLWPAGLAVAVPGLVARDVRTVVRAPNLDWHDTDL 196 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 L + + VG++ ALAE + G D + V G GA ++ +G++ G Sbjct: 197 GALLPQ--DLPLTVGNEANFGALAELWLGDGTPH-DFLHVSAEIGIGAALVVDGQLLRGT 253 Query: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIK 298 G GE+GH+ V P G RC CG GCLE A A+ + + + + Sbjct: 254 RGFAGELGHVPVHPDGPRCPCGGRGCLEQYAGEEAVLRAA----------GLEPGEDRVG 303 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + + A GD + G+ LG + A+NL +P+ +V+ G + LLP++ Sbjct: 304 LLAQHAADGDEAVRGALREAGQALGIALTGAVNLLDPEAVVLGGALAGLAPWLLPSLRDE 363 Query: 359 INTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGILL 400 + + PV S L + +GA V RA+L+ + Sbjct: 364 LARRT---AGPACPVSVSGLGSQGPLLGAAHSVVRAVLDDPAV 403 >UniRef50_B2V1I0 Putative transcriptional repressor of the xylose operon n=2 Tax=Clostridium botulinum E RepID=B2V1I0_CLOBA Length = 379 Score = 345 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 165/388 (42%), Gaps = 18/388 (4%) Query: 13 DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 ++ LN + + I ISR ++ + L A+V+ I ++L++ LI+E STG Sbjct: 7 KDLRSLNKIKIIQSILYKKQISRADLSTFTSLNKATVSVIVKELLDLRLIEESTIGDSTG 66 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ I + + I + + I + +LS+K+L+ + +T+ + L + Sbjct: 67 GRKPIILTINEDIGYVIAIDINITMIDIIVTNLSNKILSSYSIKNEDNNFETIFNNLFSL 126 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I + + + L+ IS+ + G+VD +G I ++P + +N + LE F V ++ Sbjct: 127 IHKIQNVMPSSIYNLVGISLAVRGVVDL-NGLIKFIPQLGWKNIDIRSKLENEFNVPIYI 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 +D A+AEH + D ++V + +GII N ++ G G IGH + Sbjct: 186 ENDGNLSAMAEHKL--MPNYNDMLVVDIDDVITSGIICNSQLVKGFLGFANAIGHHVINC 243 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 G++C CG GCLE +N AI + L I+ + + A Sbjct: 244 DGKQCTCGKRGCLEQYCSNLAILSHINQSLPVK----------DIEEFVNLVKEENPYAL 293 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 ++Y HL + I + N + IV+ I +P ++ + Sbjct: 294 STLDYFIDHLAIGLTNLIFILNCEVIVLNSYILRE----IPVAMQKLHEKIFLPITRYQD 349 Query: 373 VVRSELDHRS-AIGAFALVKRAMLNGIL 399 + S+L ++ IGA + IL Sbjct: 350 LYLSKLGKKAPLIGACNICVEQFYKSIL 377 >UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus faecium 1,141,733 RepID=C9BHD6_ENTFC Length = 386 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 181/396 (45%), Gaps = 19/396 (4%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV--D 66 I + +++LN A + + I + + R ++A + L ASV+ IT++L++ LI E Sbjct: 2 ISSKYTIRELNQATLLKTIIEKKEVFRAELAAATGLNKASVSDITKKLLDDQLIVETRVG 61 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 ++ GGR+ I + ++ A+ +G + L + VL+ + Sbjct: 62 DASTAGGRKPIMLTFNPQSATALSFDIGYNYLEGMLSYIDGTVLSSISKRRISIDATNVF 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + +I Q I ++ +++ + G+V D + P+ + L + L + + Sbjct: 122 DHIQESIHQLIRDLPETPHGIVGMTIGIHGVVFEDH--PIFTPYYDLHKIDLQKELADHY 179 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 ++ ++ AL E+ F S ++ + + +H G G GI+++G++ +G++G GE+G Sbjct: 180 DFPIYLHNEANLAALGEYTF--SSHYQNLVSISIHSGIGCGIVASGKLQVGKHGKAGELG 237 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H + P G C CGN GCLE A++ A+ + L LD + K Sbjct: 238 HSILYPDGRPCPCGNSGCLEQYASSKAVYEEFARL--------KGLDYVNSDILTDYVKK 289 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 GD+ A+ +++ L I I +++P IVI ++ E + ++ I + + +Q Sbjct: 290 GDTDATALLKKNAALLSIGINNIIMMYDPDVIVINSKLYEKNPQMIEQIHANLTSQ---- 345 Query: 367 FRTNLPVVRSEL-DHRSAIGAFALVKRAMLNGILLQ 401 F ++ V + L + GA A+ + LN L+ Sbjct: 346 FTKDILVRNTRLKGNAILYGALAVTAQHFLNIRKLK 381 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 344 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 168/385 (43%), Gaps = 13/385 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ---ASTG 72 ++ + +I I+RI IA+ + ++PA+VT IT +L+ GLI+E+ + + Sbjct: 45 RESGRQQILDVIRAQESIARIDIAQATGMSPATVTAITAELLAAGLIEEIAPELAPGARR 104 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEHALL 130 GR +++ G+++ H + + D + LA PL L + Sbjct: 105 GRPRVALRLRGAARLIAGLKVSHHVISTVITDFVGQELASHEMPLVQGTMPVPELCAQIR 164 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTC 190 A+ + + +L + + + G++D D G I++ ++ N A+ Sbjct: 165 RALDLTCEKGGFSIEDLSGVGLGMAGMMDADRGFIYWSSSLEERNVAFTAAISAELPCPV 224 Query: 191 FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV 250 F+ +D +A AEH FG + C++ I++ + G G GI+ + +I+ G G E+GH +V Sbjct: 225 FLDNDANLVAKAEHLFGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELGHTKV 284 Query: 251 EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSL 310 G C CG GCLE + A+ + S TI ++ ++A GD + Sbjct: 285 HLEGALCQCGQRGCLEAYVGDYALLREANI-------SSGSERHTTIASLFQSAENGDVV 337 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 A +++ R +A +N+F+P KI++AG D + + + ++ Sbjct: 338 AKSILDRARRMFAMGLANVVNIFDPSKIILAGARLSFDYLYSDKLIEEMRQWVVQVDAPL 397 Query: 371 LPVVRSELDH-RSAIGAFALVKRAM 394 V+ + A GA A + Sbjct: 398 PEVMVHDWGDLMWAKGAAAYALEEV 422 >UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357A7 Length = 405 Score = 344 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 172/401 (42%), Gaps = 13/401 (3%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE-- 64 A+ N+ VK+ N A + +I +YGPISR +IAE L P ++T LIERGL+ E Sbjct: 3 ARGTNLPRVKKQNEALIKEIIYKYGPISRSKIAEMLSLTPPTITTNVTSLIERGLVYEFA 62 Query: 65 ---VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT 121 D + + GR+ + I +A+GV + + I + DL YP RT Sbjct: 63 ADDSDVEERSLGRKPVKINFVQEAKYAVGVEMNPYHTAICMLDLRGNEKISMRYPPMNRT 122 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 L I + I + +++ + V LPG V+PD G + + + Sbjct: 123 YVEEMDVLARNINKLIQDSGTEPEKILGVGVGLPGFVEPDVGVLRESFKTEWNGKNIARD 182 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L R + + ++ R A+ E FG + + + G + R+ G N + Sbjct: 183 LSRRLDLPVLIENNARVRAIGEEMFGKTLRPDSFAYYLISYGIACPLFVKNRMITGDNAS 242 Query: 242 VGEIGHIQVEPLGERC-HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDC 295 GE GH+ V+ G +C CG+ GCLE +A+ AI ++ + G + + ++ Sbjct: 243 AGEAGHMVVDINGPKCETCGHNGCLEELASERAIIKKCKAAARAGVSTMLTELCPDIEGL 302 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 T+K + A D+ +V+E +LG T+A INL +P +++ G + + + + Sbjct: 303 TMKDVLMAEECNDAYVVKVMEEAVMYLGVTLANIINLISPPLVIVDGYMMKVKRN-RRQL 361 Query: 356 ESCINTQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAML 395 + + + + A G AL + + Sbjct: 362 LEETKKHIFGLNDQEIEIEFIDFNPLTGARGGAALAIKQLF 402 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 99/393 (25%), Positives = 172/393 (43%), Gaps = 9/393 (2%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 A G+ +++ N V ++ + G ++ ++A + L+ ASV+ I R L G + Sbjct: 4 AAATPGSQSALRRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGTVLV 63 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQ 123 D S+ GRRA +I + + V + + D +LA E + Sbjct: 64 RDT--SSNGRRAKAITLVRQPGAVVAVDFTADSVRVAVGDSDGNMLAREEIGYDVASDAE 121 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEAL 182 + + + ++ +PG +DP +G++ + + + L Sbjct: 122 RGVRRAAWLAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLPRWAGFRPAREL 181 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 ER + +D LAE + GA E + + ++ G GAGI+ +G++F G G Sbjct: 182 TERLGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLFRGAGGTA 241 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GEIGHI ++P G C CGN GCLET + + L Q D I + Sbjct: 242 GEIGHIALDPRGHVCRCGNRGCLETFVGASYLLDM----LPQNTDVARGPDPVRIPDMVA 297 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA +GD + +I G LG+ AI NLFNP ++V+ GE+ +A +LL + + Sbjct: 298 AALEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPMRRSMELG 357 Query: 363 ALKAFRTNLPVVRSELDHRSAI-GAFALVKRAM 394 +L + L +V S L +++ GA + + + Sbjct: 358 SLSSALDRLELVPSALGRDASLYGALRMAAQQV 390 >UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZML3_9FIRM Length = 410 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 181/399 (45%), Gaps = 18/399 (4%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + N KQ N +++LI +RI+++ ++ LA +VT I + +E+G++K Sbjct: 23 MKKGNGKNSITSKQFNRGLIFQLIATGTCNTRIELSRRTGLAKTTVTNIVAEFMEKGIVK 82 Query: 64 EVDQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 E +++ + GR I + + IG+ + R + L L ++ E E T Sbjct: 83 ECEEELTEVCGRNPIILKVADQAPKIIGILVFRTNIQAVLCSLDMQIFRTETIEFGELTG 142 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEA 181 L I + ++ + ++ I + G VD +G I P V++ + EA Sbjct: 143 DILIQNAFELIDRMMEE----EKNILGIGIASIGPVDIRNGIILNPPRFYGVKHVPIKEA 198 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 +++++ + + HD ALAE FG + +D +L+ V G G+G + G +F G Sbjct: 199 IQKKYNLPVYFDHDNNCAALAEKLFGIGKAEQDFLLLAVSNGIGSGFVCGGEVFHSHRGF 258 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 E+GH+ + G +C CGN GCLE A++ + +++ + + + L I Sbjct: 259 ETELGHVSINCKGLQCSCGNRGCLEMYASSYVVREKLKKI------TGLNLPYADYFKIH 312 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 +++E + + + + IN+ P+ IV+ + + + + +E IN Sbjct: 313 DR-----PEVEDILEEMIQDISAGLVSIINMLQPEMIVLGYDGIDWPEDYVKKLEILIND 367 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGIL 399 + + N+PV ++ ++ +GA ALV ++ G L Sbjct: 368 RKIAQDGWNIPVKKAYFGKQAQLVGAAALVVNSIFKGEL 406 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 175/371 (47%), Gaps = 9/371 (2%) Query: 34 SRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRL 93 SR +AEQ + + + L+E+GL+ E Q S+GGRRA ++ +G+ + Sbjct: 14 SRHAMAEQLGFSKSKANALIAGLVEQGLLAEAGLQRSSGGRRAENLQLHAGLGVLVGIDI 73 Query: 94 GRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLRELIAISV 152 G + + VLA+ P R + + + + + + ++ I + Sbjct: 74 GATSLDVAVLRPDLSVLAQHDEPADVREGPAVVLARVRVLMRELLARCGHGPKNVLGIGI 133 Query: 153 ILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQD 211 +PG V+ + G++ P + +++ + + L E + FV +D+ +AL E + + Sbjct: 134 GVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLREDYAAPVFVDNDVNLMALGELWRLK-RS 192 Query: 212 CEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAAN 271 + +++++ G G GI+ +G ++ G G+ G++GHI V+ G RCHCGN GC+E +AA Sbjct: 193 LNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAGDVGHICVDQDGPRCHCGNVGCVEAMAAG 252 Query: 272 AAIEQRVLNLLKQGYQSRVPL-----DDCTIKTICKAANKGDSLASEVIEYVGRHLGKTI 326 AI + + + G + + + +A+ GD+ A+ +I+ G +G+ + Sbjct: 253 PAITRMAVQAAEAGESAMLAECLRVHGRIDAIDVGQASRAGDTAANGIIQRAGNLIGQML 312 Query: 327 AIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI-G 385 A +N FNP + I G IT + L A+ + ++L +L + + L + + G Sbjct: 313 ASVVNFFNPSHVFIGGGITRIGPLFLAAVRQSVYQRSLALSTRHLEIQYTPLGVQGGLVG 372 Query: 386 AFALVKRAMLN 396 A L L Sbjct: 373 AGVLAMHETLK 383 >UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCW6_SANKS Length = 429 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 169/391 (43%), Gaps = 14/391 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 + +++ + I G +SR+ + + L A+V+ + R+LI+ GL+ E + STGG+ Sbjct: 6 RSASTSVIVDAIRASGTVSRVGLTVTTGLTGATVSTVVRRLIDDGLVVETGRAESTGGKP 65 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHALLNAIA 134 + + + +A+GV L T T+ DL+ +A +P P R+ + + Sbjct: 66 RVLLELDPTARYAVGVHLDHASITCTVTDLAGTSVALSTHPGPGTRSPAEVLVETAAEVD 125 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVG 193 + +D ++ I + PG + D G P ++ ++ + L + + Sbjct: 126 RLVDEAGVDRSRVLGIGFVAPGPLTSDGGMHRTPPEMRAWTDYPITSELGRLTGLPVVLE 185 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D + A+ EH+ G + ++ + G GAG++ +G + G +GN GEIGH ++ Sbjct: 186 NDATASAIGEHWAGGTGTENSFAVLYMGTGLGAGLVLDGVAYRGSSGNAGEIGHTTLDLD 245 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLN----LLKQGYQSRVPLDDCTIKTICKA------ 303 G C CG GC+E +A AA+ G + + + Sbjct: 246 GPVCWCGTRGCVEVLAGPAAVVAEARRSPDLAAAAGLSTGTSGSEPQPSVVSDLAAVARA 305 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPAIESCINTQ 362 A G A +V+E R++ A+NL + + +V+ G + A + LPA+ + + Sbjct: 306 AAAGHPGARDVLERSARYVAAAALTAVNLLDVRMLVLTGASLAAAGDIYLPAVRGVLASS 365 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKR 392 + V S + A+G ALV + Sbjct: 366 LFARGAHPVDVRLSRTAATAPALGGAALVLQ 396 >UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K724_THENN Length = 388 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 177/392 (45%), Gaps = 26/392 (6%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ-QA 69 N +K LN + ++I + P+SR I+E + L P+SVT++T++LI+ G I+E+ Sbjct: 14 NSPRIKILNKKTILKVIHENHPLSRSDISEITGLTPSSVTRLTKELIDEGYIREIGTMGK 73 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 ++ GRR + + + F ++ +G + T + +V + P + + Sbjct: 74 NSPGRRRVLLDLKKEAFLSLVFDIGVNITTYGIGFFDGEVELRGTFNTP-KNPEEFFKTA 132 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + + IS +PG+VD + KI P++ EN + + LE V Sbjct: 133 REIYERISREHSITR-----ISFSVPGMVDLEEKKILLAPNLGWENVNIEDLLE--VDVP 185 Query: 190 CFVGHDIRSLALAEHYFGAS-QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ LAE Y ++ E+++ + + G G G++ +G+IF G + GE GH+ Sbjct: 186 VLADNEANLSMLAEKYHSEDLRNVEEAVFIIIREGVGTGLMVDGKIFRGPSFTAGEAGHM 245 Query: 249 QVE-PLGERCHCGNFGCLETIAA-NAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 V +CHC N+GC E +++ N AIEQ L + + +A + Sbjct: 246 TVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELEGRNSIEK-----------FQALKQ 294 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 + A V+ ++ I +N+ NP+ +++ GE+ + IE + +ALKA Sbjct: 295 KN-DAKRVLMRFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFFSIIEDFVRQRALKA 353 Query: 367 FRTNLPVVRSELDHRS--AIGAFALVKRAMLN 396 NL + + + S +GA L ++ Sbjct: 354 AVRNLKIRPTAFRNISSNLVGAAVLAVEDIIE 385 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 8/315 (2%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLR 145 + LG L D +LA R +T+ +++++ Q ++ K Sbjct: 5 LYAAIDLGGTKIYSVLADSKGDILAHTRLETRAREGSETVMDQMVSSVDQLLEKSGGKKE 64 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 +L I V + G D + + + P++ + + L+++ + +D + AL E Sbjct: 65 QLAKIGVCIAGFYDWEKRLLIHSPNMAGWSDVDVESRLQDKLGIPVIAENDANAAALGES 124 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 GA Q D + + V G GAG+I++G+I+ G G GE GH+ V+P G C CG GC Sbjct: 125 RRGAGQGSGDMVFITVSTGIGAGLITDGKIYRGSRGFAGEAGHMVVKPDGPLCGCGRRGC 184 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPL-----DDCTIKTICKAANKGDSLASEVIEYVG 319 LET+A+ AI + ++ G ++ + T + AA K D LA EV++ Sbjct: 185 LETVASGTAIARIANEQMQNGRKTILSEITAQNSKVTAPDVFAAAKKKDPLAQEVLQGAI 244 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 +LG + +NL NPQ IVI G + EA L + I A+ ++ + ++EL Sbjct: 245 HYLGIGLVNLVNLLNPQVIVIGGGVAEAGDDLFVPLRQIIAEHAVPPAAASVTLRKAELG 304 Query: 380 HRSAI-GAFALVKRA 393 + + G L+ + Sbjct: 305 VEAGVAGMLCLLTES 319 >UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX6_9ACTO Length = 396 Score = 341 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 98/390 (25%), Positives = 177/390 (45%), Gaps = 17/390 (4%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + G+ +++ N V ++ Q+GP+++++IA S L+ A+V+ + ++L + GL+ Sbjct: 4 TRPAPGSQASLREANRERVLGVVRQHGPLTQVEIAAASGLSAATVSNMVKELDQAGLV-- 61 Query: 65 VDQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQ 122 S GRRA+ + + GV G D + + S ++LAE+ PL Sbjct: 62 -GLSPSIRNGRRAVLVSLASGGGLLAGVAFGERDVRVAIASESREILAEQLMPLQADHVA 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKI-HYMPHIQVENWGLVEA 181 +A +S +++ ++ AI LP VD SG+ + EA Sbjct: 121 DDGMERAARLLADLTESVGQRVEDIGAIGFGLPTPVDSVSGEAGSDAVLPGWRGVHVAEA 180 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 + + + + AL E GA +D + ++ G GAGI+ G +F G G Sbjct: 181 MSGYLRAPVVLDNTANLAALGELRAGALRDVQHGCYIKFSYGVGAGIVLGGEVFRGSAGT 240 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GEIGH+ ++ G C CGN GCL+T + A+ + ++ + Sbjct: 241 AGEIGHLTIDENGPICRCGNRGCLDTFVGSRALLNSLAA----------SHGPLRLRDVI 290 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 A GD VIE GR +G +A +NLFNP+ IV+ G++ EA ++++ + ++ Sbjct: 291 TRALAGDLGCRRVIEDAGRRVGVAVAGLVNLFNPEVIVVGGKLAEAGELVMLPLREALDR 350 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALV 390 A+ + + + +EL + +GA L Sbjct: 351 CAIPSAAATVELRPAELGDTADVLGAIELA 380 >UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID=C6WCK9_ACTMD Length = 435 Score = 341 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 98/410 (23%), Positives = 172/410 (41%), Gaps = 16/410 (3%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 P A+ V +++ N +A+ + GP+SR ++ ++ L+ A+V+ T L++ L+ Sbjct: 9 PTMPAKRATVRDLRRHNRSALLSTLYFEGPLSRQELVARTGLSAATVSTATAGLVDERLV 68 Query: 63 KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 S GGR + H +GV +G + LFDL+ + +A + LP Sbjct: 69 VGAGTVESDGGRPRSLLRVNPGYGHVVGVDVGETGVAVELFDLALRRIAALDHDLPPTDP 128 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSG-----KIHYMPHIQVENWG 177 + + A+ + I ++ + + +PG V+ G + + + Sbjct: 129 LAVGALIAAAVPEVIALAGADQGSVLGVGIGVPGEVERRGGAWGAATLVHAQTLGWSGVP 188 Query: 178 LVEALEE-RFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 L E + + FV + ++ AE +FGA + ++ + G GA ++++G + Sbjct: 189 LAELVRAGGTTLPLFVENGAKTQGQAEMWFGAGRGSRHVVVALLASGVGAAVVADGAVQR 248 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLL--------KQGYQS 288 G + GE GH V G RC CG GCLE A+ +R L + + Sbjct: 249 GSTSSAGEWGHTTVVHGGRRCRCGAHGCLEAYVGAGAVLERYRGLGGELGEGDERAAFAE 308 Query: 289 RVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEA 347 V L G LA+ V+E +LG IA +NLFNP+ IV+ G Sbjct: 309 LVALAGGGTLGGGSPPAGGAQLATRVLEEAVGYLGAGIATLVNLFNPELIVLGGWAGAAL 368 Query: 348 DKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 + LP+I + AL+ + + L + A+GA L A+L Sbjct: 369 GEGWLPSIVAATREHALRHPFARVRLEAGRLGPDAVAVGAATLPVAALLE 418 >UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7Z7_9BURK Length = 413 Score = 341 bits (876), Expect = 3e-92, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 162/405 (40%), Gaps = 43/405 (10%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 P G+ LVK++N + + R + +SR Q+A +S L ++V+ + R+LI+ G Sbjct: 18 APQIMKTTGDQQLVKRINRSVLLRQLRAQPGLSRAQLATESGLTKSTVSLLVRELIDEGW 77 Query: 62 IKEVDQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 + E D + + GR + + +TR+ IGV + + L+ +VL L Sbjct: 78 VTETDVTTTQSQGRPSTPLHIDTRSRGLIGVEVAVEALRVVGVSLTGQVLCAAEEALNGT 137 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVE 180 + + IA+ Q++ E + + V LPG D +G + + P++ N L+ Sbjct: 138 KPEDVCRQAARLIARTYKQLQQRNIEALGVGVGLPGAFDEATGMLRFAPNLGWRNVDLMP 197 Query: 181 ALEERF------KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI 234 + E ++ + ++ + AL+E+ F + I V G GAGI+ N R+ Sbjct: 198 PIAEALAKAKLPELKVHLQNEADTAALSEYEFSDGDAKDSLIFVTCGVGVGAGIVLNDRL 257 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 F G G GEIGH ++ G C CG GC ET + Sbjct: 258 FTGVQGMAGEIGHNILQIDGPLCSCGRRGCAETFFGARTL-------------------- 297 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 A D G +LG + FNP +V+ G + ++ A Sbjct: 298 ---------AKLPDPT------QGGHYLGVVLQNLWTTFNPSTLVVGGPSCDTYPGIVKA 342 Query: 355 IESCINTQALKAFRTNLPVVRSELD-HRSAIGAFALVKRAMLNGI 398 + + A A V + SA+GA ALV L + Sbjct: 343 AQDTLQRYADAAGMAAPTVRPARYGLLASAVGAAALVLHHELRPM 387 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 192/395 (48%), Gaps = 12/395 (3%) Query: 11 NVDLVKQLN---SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 N+ + N + + G + ++ ++ ++ ++TK+ ++L++ ++ ++ + Sbjct: 15 NLKGISHKNNLFKRNIIAHMAVNGECTLSELTKELHISVPTITKLVQELVQENIVSDLGK 74 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY-PLPERTQQTLE 126 + GGRR + + GV +GR + + + DL + ++ EE + + Sbjct: 75 VETPGGRRPNVFGLASSAIYFAGVNIGRDNMSFLITDLHNNIVKEELLTDFELQDRPQCL 134 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + + IA FID+ + +++ + V + G V+P +G+ + + L + +E+R Sbjct: 135 EKICSNIAHFIDTCGVERAKILGVGVSVSGRVNPTTGRSYR--YFTSSEQSLRDMIEQRI 192 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + + +D ++ AE+ S+D D + + + RG GI+ NG+++ G++G GE G Sbjct: 193 GIRVLLENDSQARCYAEYTNSKSKDEMDVLYLHLGRGLAIGIVMNGKLYYGKSGFAGEFG 252 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTIC 301 HI C CG GCLET + AIEQ+ L+ QG + + + + I Sbjct: 253 HIPFFDNEIICSCGKKGCLETEVSGIAIEQKFGRLISQGVNTILREKYNKHEAIHVDEII 312 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 AA D+L+ E+IE VG GK +A IN FNP+ +++ GE+ EA L+ ++S N Sbjct: 313 DAAKHDDNLSIELIEEVGEKAGKAVAFLINTFNPETVIVGGELAEAGDYLMLPLKSATNK 372 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML 395 +L + S++ + A GA L++ +L Sbjct: 373 YSLNLVYKDTKFRLSKMGKTASAWGAAMLIRNQVL 407 >UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterales RepID=C6P958_CLOTS Length = 382 Score = 340 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 179/392 (45%), Gaps = 23/392 (5%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 Q + G L+K +N+A V +I + PISRI+I++ ++ ++V+ I +LI+ GL+ Sbjct: 1 MTQYRKGTNYLIKNINTANVLDVIKKMQPISRIKISKVLNMSKSTVSGIVDELIKEGLVS 60 Query: 64 EVDQQAST-GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 E +T GR+ I + +IG+ + + L +L K++ + P + Sbjct: 61 EEGYGKTTSAGRKPIELTFNPNAKFSIGIDIESTNTIGVLTNLEGKIIKKIKRPTGVKD- 119 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 ++ I + +D +E+ I V PG+ + + G + Y P + ++ L+ L Sbjct: 120 -EAFDNAVDIIRELLD----CQKEITGIGVGAPGITNIEKGTV-YAPGLSWVDFNLLPKL 173 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 +E F F+ + + AL E + G+ +D + +LV + G G+GI NG++ G + Sbjct: 174 KEVFDYDIFIDNSVNYAALGERWIGSCKDVNNFVLVTIGNGIGSGIYINGKLVRGHKYSA 233 Query: 243 GEIGHIQVEPL--GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 GE+G++ + ++ ++G E+ A+ + + NL + T++ Sbjct: 234 GEVGYMAIGRDILNKKYFYEDYGYFESKASLLGLVSSLKNLSNGKFN--------TMEDF 285 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 D + +L I++ NP+ IVIAG++ ++ ++ I+ Sbjct: 286 INGYLAKDEICIRAFNEFIENLSMGFTNIISILNPELIVIAGDVINLGINIVENLKRLID 345 Query: 361 TQALKAFRTNLPVVRSELDHR-SAIGAFALVK 391 ++ ++ ++L+ +AIGA A V Sbjct: 346 KMIPF----DVKIIYTKLNEDAAAIGASADVL 373 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 339 bits (871), Expect = 9e-92, Method: Composition-based stats. Identities = 104/387 (26%), Positives = 165/387 (42%), Gaps = 19/387 (4%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG--------GR 74 V I GPI R+QIA ++ L+ A+VTK LIE G + + + G GR Sbjct: 19 VLTRILTQGPIPRVQIARRTGLSQAAVTKAVAPLIEAGFVTDEPVAPTEGSGESQLGIGR 78 Query: 75 RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIA 134 + + IGV++ DL++ + H PL + + +T+ ++ Sbjct: 79 PVSPLTVLADSVSVIGVKVTPTGLIGVTTDLTAGIRTVRHSPLRDSSTETVIPRIVELAR 138 Query: 135 QF---IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + +D LI I V + G VD G + P + L L E Sbjct: 139 ELMDFLDDQANGAGPLIGIGVAVSGDVDAAHGVVRDSPFMGWREVPLAATLTEELGAPVV 198 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V +D+R+L +AEH+FG D + +V + G G G+ NG + G G GE+GH+ + Sbjct: 199 VTNDVRALTVAEHWFGVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLPLA 258 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 P C CG GC+ET+A++ AI R + + + + A+ GD A Sbjct: 259 PGELICTCGRRGCVETVASSDAILARTRETTGR--------PELDLAGAIELAHAGDEHA 310 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 E + G +G +A +NL P+ +VIAGE + + + A A Sbjct: 311 REAFDQAGEVIGSALAAMVNLVGPELVVIAGEGVADYDLYEQRMRRAFSAHAFGAAGDCR 370 Query: 372 PVVRSELDHRSAIGAFALVKRAMLNGI 398 ++RS A GA A V R+ + G Sbjct: 371 LMLRSHTFDDWARGAAATVIRSYVRGE 397 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 175/386 (45%), Gaps = 14/386 (3%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 +++L+ P +R ++A + A +++ L+ GL+ + +STGGR + Sbjct: 19 LFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAGEASSTGGRPPATFAFS 78 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQ 141 + V LG A + + DL+S VLAE P+ + + + + S Sbjct: 79 PAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDVILGWVAQTGEELVLSTG 138 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLA 200 R L +L+++ V LPG V+ +G+ P + ++ + L R + V +D+ +A Sbjct: 139 RTLDDLVSVGVGLPGPVEHSTGRPINPPIMPAWDDVDVPGGLSARLGASVLVDNDVNIMA 198 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV-EPLGERCHC 259 L EH D + V+V G GAGIIS+G + G G G+IGH+ V + C C Sbjct: 199 LGEHRT-EWPGVSDLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHVAVSDRSEVPCRC 257 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 GN GCLE +A+ A+ ++ S + GD AS + G Sbjct: 258 GNLGCLEAVASGQAVAAQLAATGLAATSSN---------DVVALVRAGDLYASRAVRQAG 308 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 R +G +A ++L NP IV+ G + + + L+ I + ++L +L +V S Sbjct: 309 RDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGIREVVYRRSLPLATQHLRIVASRTG 368 Query: 380 HRSA-IGAFALVKRAMLNGILLQHLL 404 +R+ +GA A+ +L+ + L+ Sbjct: 369 NRAGVLGASAMAVDHVLSSAAIDALI 394 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 22/396 (5%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I N ++++ N V I P+SR ++A+Q L A+++ I ++L+E+ I+E+ Sbjct: 17 IANQEMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGSA 76 Query: 69 ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 ++ GR+ I + A+ + + L +L +V + P Q L Sbjct: 77 QTSMGRKPILLEFNKAYGFALSLEIQPQQIIALLTNLKGEVQEIKKIPF--CPQDNLLQH 134 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 L + +I ++I +S+ + G+V + I + P+ + GL L+E F++ Sbjct: 135 LEQILNFYIRENTAFKNKIIGVSIGIYGVVQKNE--ILFTPYYPLPKSGLGTHLQETFQI 192 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 FV ++ L E F ++ I + VH G G GI+ NGR++ GR+G GE GH Sbjct: 193 PVFVENEANLSVLGEAAF--HHKYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGEFGHT 250 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + P G+ C CGN GC E A+ AI + K+ ++ TI K + Sbjct: 251 ILFPDGKPCPCGNQGCFELYASQRAILENYAARQKK--------ENVTISEFLKDYDANL 302 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 LA E+++ +++ I IN FN IV+ + +P I I+ Sbjct: 303 PLAHEMMDLFVKYISIGINNIINTFNTDIIVLNSAFSNH----IPDINQRISEYLAGHQN 358 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQHL 403 + ++ S+L + S +G + L+ + HL Sbjct: 359 RDCNIIPSKLGNLSCLLGGARISVENFLD---IHHL 391 >UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C348_BEUC1 Length = 410 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 170/381 (44%), Gaps = 16/381 (4%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST--GGRRAIS 78 A V+ I +GP+SR ++ + L ++V ++T L GL+ E + S GGRRA Sbjct: 11 ARVFGEIWHHGPLSRSELVALTGLTKSTVFQLTEDLQRDGLVVETGLRTSGSQGGRRATL 70 Query: 79 IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFID 138 + +GV LG ++ + D +VL P R + I + Sbjct: 71 LQANPDAVRVVGVHLGGTRTSVAITDTFGRVLDARSRPTVRRRPDESVARVAEMIGELSA 130 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRS 198 + A+ V +PGL+D D+G P++ + + + E + + +++ Sbjct: 131 EHGAPS----AVGVAVPGLIDRDTGLCLVAPNLGWRDVPVATLIGEAVQAPTIALNTVQA 186 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV----EPLG 254 +A+AE + ++ V G G +I++G + G G GE+GH+QV +P Sbjct: 187 MAVAEMAQLRPDERMTLAMLYVGTGVGTALITDGNLLRGARGLAGELGHLQVRDPGDPEA 246 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 +C CG GCLE++ AI +R R+ T + + + A+ GD+ A + Sbjct: 247 VKCACGRVGCLESLVGADAIVRRATQRGIAAAGRRL-----TPELVGELASDGDAAARSL 301 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 I+ + +G+ A + L NP +V+AG + +LL + + + R +L V Sbjct: 302 IQDIAVEMGEAAAALVQLTNPDTVVVAGSVASMGDMLLDPLRETVVRRTQPELRESLDVR 361 Query: 375 RSELDHRS-AIGAFALVKRAM 394 RS LD++ GA L +A+ Sbjct: 362 RSLLDNQGKLRGAITLALQAL 382 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 109/392 (27%), Positives = 191/392 (48%), Gaps = 8/392 (2%) Query: 15 VKQLNSA--AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG 72 +K+LN I ISRI+++ +L PA+VTKI ++L LI+ + STG Sbjct: 1 MKKLNITDYKALEEIRTNNKISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTG 60 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR S+ R +G+ G L L ++L + R+Q+ + L Sbjct: 61 GRPEKSLKINHRYKMILGINFGPEFIETALSYLDGELLCMKRRNFYIRSQEKILRILFEE 120 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 I ++ Y +++ I + L G V+ + G + PH +N + E +E+++ + + Sbjct: 121 IDNVLEEY--SKDDILGIGLALHGTVNREKGISIFSPHFGWKNLNIQELIEKKYSLPVII 178 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ-VE 251 +D+R++A+AEH FG +Q+ ++ +++ + G G I NG+ + G + + GEIGHI VE Sbjct: 179 DNDVRAMAIAEHEFGRAQNTDNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITAVE 238 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 RC CG +GCLE +++ AI+ +VL L++ Q +V + T + I K A + Sbjct: 239 NSSRRCSCGKYGCLEAESSDEAIKNKVLTELEK-IQEKVDISLKT-EDIYKMAAEKKEPY 296 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 V+ +GK + +N+ N + +++AG I D + + I L +L Sbjct: 297 FSVVRNSSYEIGKAVGNLLNILNIKLVIVAGRIVNTDSLFFVNLNKGIKKNILDGLEKDL 356 Query: 372 PVVRSELDHRSAI-GAFALVKRAMLNGILLQH 402 V ++L I GAF+LV + G L Sbjct: 357 HTVPAKLYDSIGIYGAFSLVTTNLFKGRKLIK 388 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 104/386 (26%), Positives = 179/386 (46%), Gaps = 6/386 (1%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 K V + G + + + SVT + +LI+ + + + GRR Sbjct: 22 KNQKQRKVLAHLYSEGTCTLAHLTRMLHSSVPSVTSLVEELIDNQWVTPIGTATGSNGRR 81 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQ 135 + T++ + + + HD I ++ KV+ Y L + +L++ Sbjct: 82 PVLFGLNTKSHYVAVLDVSTHDTKILFMNVQRKVIFRGDYDLRLNDNPSFLTSLVHYFHN 141 Query: 136 FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHD 195 + + + +LIA+ + +PGLVD G ++ L + L ++ +D Sbjct: 142 ALADSEISIDDLIAVGISMPGLVDARRGLNLTYKNLHQTGESLPQWLSAELNKPVYLIND 201 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 ++ L E FG +Q + + + + G G GII NG +F G +G GE+GHIQV+P GE Sbjct: 202 TKATVLGESRFGGAQGKKQVLAINIDWGVGLGIIVNGEVFQGASGFAGELGHIQVDPDGE 261 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP-----LDDCTIKTICKAANKGDSL 310 C CG GCL TI + +A+ +R + G S++ +D I + AAN GDS Sbjct: 262 LCFCGKIGCLSTITSASALVKRAQTDILAGQVSKLATFRDHVDQIDIDEVINAANSGDSY 321 Query: 311 ASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTN 370 A +++ G LGK +AIAI+LFNP+ IV+ G + +A +L IE I+ L FR + Sbjct: 322 AIDILHETGYQLGKGLAIAISLFNPEIIVVDGVLFKAAAFILNTIEQAISKYCLSDFRND 381 Query: 371 LPVVRSEL-DHRSAIGAFALVKRAML 395 + + ++L +G A + + Sbjct: 382 MTIEVTQLNGTAKWLGTHAYMMEDIF 407 >UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bifidobacterium RepID=C6A8T4_BIFLB Length = 401 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 158/380 (41%), Gaps = 7/380 (1%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + + N A + + +G SR QIA+ L PA+++KI+ L+ G I Sbjct: 1 MNSRTTTEQQTLSEYNRARTLQYLHHHGIASRAQIAKALHLTPAALSKISNHLLASGAIV 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQ 122 E G RR+I + R F +GV+ R I LFDL+ K P T Sbjct: 61 ETGALEGKGNRRSIGLAVNARAFQVLGVKFARSLIEIGLFDLAGKPSFIRELPTVENTTI 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEA 181 +L I + + + ++AI + +PG D G + + Sbjct: 121 PQAIESLHAEIRRLLAEHPH----ILAIGMAVPGPYLRDRGHTAVVSSMGQWRQVNFRAE 176 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 E F V + D R+ ALA++ F + E+ + G G G+I +G + G G Sbjct: 177 FEHAFDVPVIIEQDARAGALAQYLFDPNPANENLAYYLLGEGIGLGVIDHGTVINGSLGA 236 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 EIGH+ ++ G+ C CGN GCLE + AI + +L SR+ + + + Sbjct: 237 ATEIGHVSIDVNGKACDCGNVGCLERYCSAVAIHEAMLGNGMLATDSRLTHREACAE-LF 295 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 A GD A E++E +G +G N FNP +IVI + +A + LL + + Sbjct: 296 ARAQSGDGQARELVERIGTFVGYGCVTICNAFNPSRIVIGDIVAQAGEPLLQRVREVVGE 355 Query: 362 QALKAFRTNLPVVRSELDHR 381 + + + + S L Sbjct: 356 RVIPEITQSTQIELSALPTD 375 >UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG91_9CLOT Length = 403 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 110/398 (27%), Positives = 193/398 (48%), Gaps = 16/398 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N + ++ +N + L+ + G +R +A SQL A+VT I I+ GL+KEV Sbjct: 6 RGFNQENIQDMNRTLLLNLLRKEGICARAHLANLSQLKQATVTNIVSDFIDWGLVKEVGF 65 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL-E 126 GRR+I I +F + +RL R + T+ +F+LS ++L ++ L + Sbjct: 66 LVGNKGRRSIGISINNDDFGVLAIRLARKNYTVGIFNLSGRLLDKKRVELDVNQPPRVTF 125 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPH-IQVENWGLVEALEER 185 A+++ + I S + R++IAI + +PG G+I M + + E L++ Sbjct: 126 EAIIHEAGELIRSS--ESRKIIAIGMAIPGPYSEKRGRIELMTGVLGWNEIPIQEKLQDI 183 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCED--SILVRVHRGTGAGIISNGRIFIGRNGNVG 243 FK+ F+ D + ALA+++ +D ++ + + V +G GAGII+NG + G G G Sbjct: 184 FKIPVFLEQDANAGALAQYWH-NDEDYKNGVVVYIAVGQGVGAGIINNGELLKGCIGVAG 242 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E+GH + G RC CGN+GCLE ++ A + V +L+ P + + + + Sbjct: 243 EVGHTSICYNGPRCACGNYGCLENYCSSIAFTKEVNRVLR-------PEIEYNFRQVSQL 295 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK-VLLPAIESCINTQ 362 GD + +++ L I IN FNP IVI E++ V+L ++S + + Sbjct: 296 LRDGDQVVTDIFLDACDKLSVGIVNIINSFNPSVIVIGDEMSHILPSVMLERVKSNVKER 355 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGIL 399 L N+ + S + + S A GA + + N L Sbjct: 356 VLPEIYANMNITMSVVSNDSMAHGAAIVAINDIFNHPL 393 >UniRef50_D2BD51 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangineae RepID=D2BD51_STRRD Length = 401 Score = 337 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 171/382 (44%), Gaps = 14/382 (3%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 +T Q + V+ N A V R + ++ P SR IA + L A+V+ + LI+R Sbjct: 2 ITSTTDPQPADFADVRATNLAVVLRFVREHAPCSRADIAASTGLNKATVSSLVADLIDRR 61 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 L++E + GR A +V + + AIGV + T DLS + L Sbjct: 62 LVRETGLTENRVGRPATMLVLDGSPYAAIGVEVNVDYVTAVAVDLSGERLLSWRRSFSGA 121 Query: 121 T--QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL 178 T + + + ++ ++ R+++ ++V +PGLV D G + P++ + L Sbjct: 122 TITAAQAVATVAAIVRRVVNRMAKEERQVLGLAVGVPGLVGTD-GTVRIAPNLGWRDADL 180 Query: 179 VEALEERF---KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIF 235 L + V +D ALAEH FG + + + G GAG++ +GR+ Sbjct: 181 CGDLTKALRDPGFPVQVDNDANLAALAEHRFGPRAGTANLVYLTGEIGVGAGVVLDGRLR 240 Query: 236 IGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDC 295 G G GEIGHIQ++PLG C CG GCLE +A A+ + + + Sbjct: 241 RGGQGYGGEIGHIQLDPLGAECRCGRLGCLEAVAGIGAVLEHAALSPAEV--------EI 292 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI 355 + + + A D V+ VG +LGK +A+ NL NP+ +++ G LLPA+ Sbjct: 293 ELDEVVRLARAADPRILAVLATVGHNLGKGVAVIANLLNPEVVILGGYYVPLAPWLLPAV 352 Query: 356 ESCINTQALKAFRTNLPVVRSE 377 E+ + + + VV S Sbjct: 353 EAELRGRTIAPDAGGCQVVAST 374 >UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XND9_MEIRU Length = 397 Score = 337 bits (865), Expect = 6e-91, Method: Composition-based stats. Identities = 93/393 (23%), Positives = 165/393 (41%), Gaps = 20/393 (5%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + + +K+LN + + ++GP SR +A L ++V+ + ++++E GL+ Sbjct: 1 MARTTPLDQQAIKRLNRRLILEALRRHGPQSRAALARAVGLTKSTVSTLVQEMLEEGLLD 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 E + GR ++ R+ A+GV LG + + L DL++ + + + E Sbjct: 61 EGSRHKPGLGRPGTALEFSPRHTLALGVELGVENTQLVLLDLNNTI--HDKWDWVESPHT 118 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 L L Q L+ I + +PG+V+ ++ Y P N E LE Sbjct: 119 PLAERLTKLAEQVQSRL-SDPTRLLGIGLAVPGVVN--GRRLLYAPGPGWHNEQPAEMLE 175 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 KV V +D + AL E ++G Q + V + G G G++ +G+++ GR G G Sbjct: 176 ALLKVPTLVDNDANAAALGETFWGEQQSP--LVYVLMTTGLGTGLVVDGQVYRGRLGAAG 233 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E+GH G+ G +E + A+ +R + I + Sbjct: 234 ELGHW---LTGQPHSRSRAGDVEGTLSLRAMVERYQAASNRKEGFWG---------ILQR 281 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A D A + ++ + LG+ + F+P +V+ G EA K L + I+ A Sbjct: 282 AEHQDPYALQALQNLAYELGRFVVNLCVAFDPAVVVLGGAGAEAWKWLEAPLRQTIHNLA 341 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRAML 395 +PV S H + A+GA ALV + L Sbjct: 342 FIPEHAEIPVKPSAFGHLAPAMGAAALVLQRFL 374 >UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Micrococcaceae RepID=A9WVF3_RENSM Length = 426 Score = 336 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 86/398 (21%), Positives = 166/398 (41%), Gaps = 6/398 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQY-GPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + + N+ + N + + I + +SR+++A LA +V+ I R+L+++ LI E Sbjct: 18 RRRGTNLPRMGDFNLSVILDAIRRSPEGLSRVELAGIVGLAAQTVSNICRRLLDQNLIVE 77 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQ 123 + S G+ + +A+GV L + L DL+ V+ + P+ Q Sbjct: 78 AGKYGSGPGKPRTILRLNPGGMYAVGVHLDPVETNYALLDLTGAVVTTRTHLTQPDAEPQ 137 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 A+ I I + ++ + + PG +D +G I PH+ L E L Sbjct: 138 QTIDAMAEEIESIISEQNIERNKIAGLGIAAPGPIDGATGAIVEPPHMPGWGTVELRERL 197 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + ++ + D+ + A+AE + G I V + G G+G++ + + G +GN Sbjct: 198 HKAVELPVLLDKDVTAAAVAEIWAGGLSGSGSFIFVYIGTGIGSGLVLDDEVVRGSSGNA 257 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLL-KQGYQSRVPLDDCTIKTIC 301 GE+GHI +P G C CG GC++ I K ++ + + Sbjct: 258 GEVGHIIADPDGPDCDCGKRGCVKVTCMPENIVAEAAAAGFKAVLDNKGKSLQVQMAALS 317 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCIN 360 +AA GD+ A ++++ +++ NL + +V G + L + IN Sbjct: 318 EAALAGDAAAQKILDLAAERFATAVSVQANLLDVDHVVFGGPFWKHFEPTFLAKLPQRIN 377 Query: 361 TQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNG 397 ++ + ++ VV + + A+GA LV Sbjct: 378 ERSATSKVHSVEVVGTGVGSDVGAVGAACLVLEDTFGP 415 >UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifidobacteriaceae RepID=B3DR20_BIFLD Length = 389 Score = 336 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 162/392 (41%), Gaps = 15/392 (3%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G+ +++ N A + I ++G ++++++AE + L+ A+V+ + QL++ ++ Sbjct: 1 MATRLFGSQTSLREANRANLLASIHKFGAMTQVELAEVTGLSTATVSTLVHQLVDEDQLE 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 GRRA + +G+ + R T+++ D S ++AE PLP Sbjct: 61 TKSTV--RNGRRATLVTLARHQGLGVGLWIARRHLTLSIVDFSKSIIAEHTLPLPLGHKA 118 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEA 181 T + I + + S + EL+ I V + V I + + + Sbjct: 119 DTTLERAMLLINETLSSIDAEASELVGIGVAVAAPVATSDHTIAIPGILPGWDGVDITSP 178 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L F V +V +D A E G + + + + G GAGI+ NG I G G Sbjct: 179 LRTAFNVPVYVDNDANFAAYGESRMGVAAGKRNFVYISASDGVGAGIVINGEIMHGVTGL 238 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GEIGHIQV+PLG C CGN GCL+T+ A + Q + V + T+ + Sbjct: 239 AGEIGHIQVDPLGAICSCGNRGCLDTVVAENRLVQLLS----------VTHGNMTLDDLV 288 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 AN+GD +I +G+ A +P+ IV+ G++ V + + Sbjct: 289 SFANEGDPGCRRIIADAAVRIGQVAADLCISVDPEVIVLGGKLAMTGDVFIQPFNEALQR 348 Query: 362 QALKAFRTNLPV-VRSELDHRSAIGAFALVKR 392 + V V S D A+G Sbjct: 349 MLFPDAVAPIDVLVSSHPDDNCALGGALCAIE 380 >UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q516_CATAD Length = 404 Score = 336 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 157/398 (39%), Gaps = 4/398 (1%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 QA +++ + A + I +SR ++A + ++ A+V+ + LI GL+ Sbjct: 1 MIQAGAQTTRDLRRRSRATLLSCIYLGRAVSRPELARLAGMSSAAVSNVVSDLISDGLVA 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAE--EHYPLPERT 121 E S GGR + +A+GV +G + LFD + LA + Sbjct: 61 EAGSVDSNGGRPRTMLAARPGFGYAVGVDIGETHIHVVLFDWTLSTLATSTHEIRVGRLD 120 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 + +++ + +DS L+ I + +PG V + + P + L +A Sbjct: 121 PDVVVRLVVSGVRSLLDSTGVPHERLLGIGIGVPGAVQEGERGVVHAPTLGWSGVPLGDA 180 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L + + R+L AE + GA +D +++ G GA I + + + Sbjct: 181 LRAELDAPILIDNCARTLGQAEAWRGAGRDARRAVVALWGVGVGAAIAEGSSLAESGSSS 240 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 E GH +E G C CG+ GCLE AI L + + + Sbjct: 241 TSEWGHAVIEARGRACRCGSHGCLEAYVGATAILDAYLAHPAGKPFTSDGTEAKMAELAA 300 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCIN 360 +A D A+ + +LG + IN+ NP ++++AG + + +L+PAI Sbjct: 301 RATTGADEAATATFDEAAEYLGIGVGNLINMINPDQVILAGWVGEQLGPLLMPAIREAAR 360 Query: 361 TQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNG 397 AL + EL + A+GA L +L Sbjct: 361 RHALPYLFDQTRIDVGELGPGAVALGAATLPVARLLAA 398 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 336 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 163/374 (43%), Gaps = 6/374 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI--- 62 + + D +++ N + V + + + GP++RI + + ++L+PA+VT IT L+++ LI Sbjct: 1 MTRKADRDQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSL 60 Query: 63 -KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEH--YPLPE 119 E + GR + + IGVRL ++ + L + + +V+ E + Sbjct: 61 ESEEPKAPQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSAT 120 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV 179 + L+ I QF++ + I V G+V+ ++G + + P +V Sbjct: 121 EDAASFPETLIGTIRQFLNDAGIVPSRVREIGVAAQGVVETETGVVAWSPAFAGRKIPIV 180 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 L + F C++ +D + A H+ ++ ++ + G G G+ + R+F G + Sbjct: 181 GPLHDAFGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSGAS 240 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G E GH P G C CG GCLE ++ A+ + +L + S + + Sbjct: 241 GTAAEFGHANHLPGGALCRCGKKGCLEAYLSDYALVRAASHLPENTDPSTIKAGVGGLAR 300 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + + A GD A GR LG +A I + +P++IV+ G A + + + Sbjct: 301 LIELAGSGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVLTGAAMRAFSFMEKGMWEGL 360 Query: 360 NTQALKAFRTNLPV 373 + R N + Sbjct: 361 EEALVADLRNNFSL 374 >UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1Z3_9CLOT Length = 388 Score = 336 bits (863), Expect = 9e-91, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 156/391 (39%), Gaps = 17/391 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N+ VK+ N VY I + ++ IA + L+ +VT + +++ L+ + Sbjct: 2 KGNNLSDVKKANRQVVYECIWSHKAVTMTDIAYMTHLSRPTVTSLVQEMTADNLVVKSGY 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSK-VLAEEHYPLPERTQQTLE 126 S GGR + +A+G+ L + + +L + + + + + Sbjct: 62 GTSNGGRNPVLYHANAGAAYAMGIDLEFPKVRMAISNLECENICFSVRVYPRDSDKDQMI 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGK-IHYMPHIQVENWGLVEALEER 185 L + I L+ + + +PG++D + + EN + + ++ Sbjct: 122 RLLKQQMDDLIQDSGIDRSRLLGVGMGIPGVIDYKQNHSVLFERIEGWENVPIGDIIQRY 181 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 ++ +D+ L+ AE +D ++ + + + G G I ++G + G GN G I Sbjct: 182 VGKPVYICNDVNLLSWAERKAAHLEDVQNMLYIVIRSGIGMAIWTDGSLMQGEMGNSGRI 241 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ V+ G C CG+ GCL + A+ + L + + + A Sbjct: 242 GHMTVDKNGLECKCGSRGCLGLYTSEKAMMRIYSELTGK--------EIKQAGDLVPLAE 293 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK--VLLPAIESCINTQA 363 GD A +V E GR+LG I NLF+ ++V ++ + +L + ++ + Sbjct: 294 SGDKAALQVFETCGRYLGIGIVNVANLFDISEVV----VSASFDVSYILRNAQYALDVRK 349 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 + R + + L +G LV Sbjct: 350 MNTIRREVKIREGLLAESGFGLGGCLLVLDK 380 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 336 bits (863), Expect = 9e-91, Method: Composition-based stats. Identities = 101/391 (25%), Positives = 175/391 (44%), Gaps = 6/391 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 V+ N A+V + + GPISR IA ++ ++ A+ + QL+E G++ E Q S Sbjct: 7 TTRDVRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLEEGVLGEAGQMPS 66 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSS--KVLAEEHYPLPERTQQTLEHA 128 GGR A +GV LG + LFDL+ +L + E+ + + Sbjct: 67 NGGRPASLTGINPGYGAVVGVDLGETAVRLELFDLALQRTLLVDTPVRAGEQGAEAIAEL 126 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + + + + L+ + V +PG+V+ + + P + E L LE+R + Sbjct: 127 IAAGVERLLSESGVARERLLGLGVGVPGIVEDSGTSLVHAPSMGWEGAPLAALLEQRTGL 186 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 V + ++L AE +FGA+ + +D ++ + G GA ++ G ++ G + + GE GH Sbjct: 187 PATVSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGASASAGEWGHT 246 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + G+ C CG GCLE AI +R + G + ++ I+ + AA G Sbjct: 247 TIVLDGDTCRCGAHGCLEAYVGAPAIVRRWAAV--SGEATAGLGEEEVIEQLAVAAEAGG 304 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQALKAF 367 A EV+ R+LG ++ +NL NP +IVI G +LLP + +AL Sbjct: 305 EQALEVLRETARYLGAGVSDLVNLVNPDRIVIGGWVGLRLGPLLLPLVREQARRRALGPP 364 Query: 368 RTNLPVVRSELDHRS-AIGAFALVKRAMLNG 397 L + L + A+GA ++ Sbjct: 365 FERLTLDLCHLGPDAVALGAATMIVDRFFAA 395 >UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B8FTN1_DESHD Length = 406 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 169/390 (43%), Gaps = 14/390 (3%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 + LI G +++ Q+A+ + L ++ ++ L + LI + STGGR+ + Sbjct: 20 KKILGLILHKGGMTKSQLAKVAGLKLTTLNRMMLPLEKADLILPTETGESTGGRKPVIYD 79 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDS 139 R ++ IG+ + R + + L +L +++ ++ + + + Q + +L+ I + ++ Sbjct: 80 VNPRRYYVIGIDISRLYSQVVLTNLKMELIEKDRFDMDRNSSPQATLNRILDWIGRVMEK 139 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHI---QVENWGLVEALEERFKVTCFVGHDI 196 +I + + G +D SG I + EN L +EER + + + Sbjct: 140 RG--HGYVIGVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIIDNGA 197 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 LAE +G+ + + I + G G+IS+G + N H+ ++ G+ Sbjct: 198 NGAVLAETRYGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVIDVNGKP 257 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR--VPLDDCTIKTICKAANKGDSLASEV 314 CHCGN GC+E ++ AI + + + QG R + +C+ A + D++A +V Sbjct: 258 CHCGNQGCVERYSSIYAIMEALAEEMPQGKDRRNHKADRPVSYLELCREAEENDTIARQV 317 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 ++ +G +A I L NP +V++G + ++ + +L V Sbjct: 318 LQNAAVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRRRPWDKGGHL--V 375 Query: 375 RSELD----HRSAIGAFALVKRAMLNGILL 400 S + +IGA ALV L L Sbjct: 376 FSRGGAFEENAISIGAAALVVEHYLEPETL 405 >UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AF76_LISW6 Length = 378 Score = 334 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 173/392 (44%), Gaps = 20/392 (5%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 N ++++ N V I Q GP SR +++ L A+++ I ++LI + LI EV Sbjct: 3 TNRTVIRESNERIVLNTIAQKGPHSRALLSDTIGLNKATISDIVKKLIAQKLINEVGIGE 62 Query: 70 ST--GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 ST GGR+ I + + ++ V +G + + L E +P ++T+ Sbjct: 63 STNLGGRKPIMLELNAKAGFSVSVDIGYNYIDVMAQRLDGTAYKRELFPFIVIKRETIIQ 122 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + + + F+ S + ++ I + + G+V + I + P + AL E+F Sbjct: 123 EISDILDVFLSSLPKSPFGIVGILIAIHGVVLDNQ--IQFTPAYDLAGLDFSSALHEQFA 180 Query: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 ++ ++ LA+++H S + + + +H G G+G+I N ++ G NG GEIGH Sbjct: 181 CPVYLENEANLLAVSDHTKEES--YANLVSISIHSGIGSGVILNNELYTGINGYAGEIGH 238 Query: 248 IQVE-PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 +Q+ G C CG GCLE A+ I +R + + +C+A + Sbjct: 239 MQIVTENGRPCPCGASGCLECYASEKNILDTYQ--------TRTGNKNALVTDLCRAFTE 290 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 + A VI + R+L I L+NP+ I I EI+ IES + + Sbjct: 291 KEEEAMAVINDMVRYLATGIQNLTALYNPEIIFINSEISRLIPDFTKQIESRLTSFT--- 347 Query: 367 FRTNLPVVRSELDHRSAI-GAFALVKRAMLNG 397 N+ + S L + + GA L+ + L Sbjct: 348 -SKNIAIKESHLGEEAILYGAGYLIIQRFLAS 378 >UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSD8_ACIC1 Length = 420 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 12/396 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 A + LI + ++R ++ + S ++ + L+ GLI E + STGGR + Sbjct: 15 LAQLLALIRRGSAVTRSELVQSSGFGRTAIARRLDHLMALGLIAESEPLPSTGGRMPRGV 74 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFID 138 + LG + DL +VL+ ++ L +++ + Sbjct: 75 YFRADAGRLLVAELGATSIAAGICDLDCRVLSSREEAWDIAAGPESTLARLEALLSELLR 134 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIR 197 +Q ++ I V LPG ++ +G+ P + + + + E L +RF +V +D+ Sbjct: 135 DHQA---KVWGIGVGLPGPIEFATGRPVSPPIMPGWDRYPVRERLAKRFSAPVWVDNDVN 191 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV-EPLGER 256 LAL E G + D I +++ G GAGI+S GR+ G G G+IGH+ V + Sbjct: 192 VLALGELRAGVGRAHSDLIYIKIGTGIGAGIVSGGRLHRGAQGCAGDIGHVAVTDDQAVV 251 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI-----CKAANKGDSLA 311 C CGN GCLE +A AA+ +R ++G + + A GD+ Sbjct: 252 CRCGNIGCLEAVAGGAALARRATAWAREGRSGYLQQRLTEGGDLTAATIAAGAAAGDTGC 311 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 E++ R +G ++A +N FNP ++I G + +A L +I + +++L +L Sbjct: 312 VELLAAAARQIGDSLATFVNFFNPSIVIIGGGVAQAGNAFLASIRQRVYSRSLPLATRDL 371 Query: 372 PVVRSELDHRSA-IGAFALVKRAMLNGILLQHLLEN 406 +V S L IGA +V +L+ +L ++ Sbjct: 372 QIVLSSLGDIGGLIGAAHMVVDEILSPKVLSLWIKE 407 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 334 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 90/379 (23%), Positives = 175/379 (46%), Gaps = 12/379 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRR 75 +Q N V R + ++ +R ++A + L+ +V+ +T +L++ G++ + + GR Sbjct: 12 RQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHEDTQPRTGRP 71 Query: 76 AISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIA 134 + + + +A+G+ +G + + DLS ++L E + + Sbjct: 72 PVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHERSAADVDHAPVESFDLAGELVH 131 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVG 193 + L +I + + L VD +G + + +E R + V Sbjct: 132 GALGQAGVPLDRVIGVGMALAAPVDRATGTVFADGILPSWGRVQPAIEMEARLDLPVMVH 191 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D AL EH FGA +D + + VR+ G G G++ GR + G +G GE+GH++V P Sbjct: 192 NDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGELGHVRVAPE 251 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G C CGN GCLET+A++ A+ + + + + +++ + + GD A Sbjct: 252 GLICRCGNRGCLETVASSTAVARLLAH---------SRDEPVSVERLLELVADGDRGARR 302 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 + G+ +G+ +A +NLFNP+ I++ G++ LL + + I+ A+ + V Sbjct: 303 AVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPLRTAIDEYAVAPAAGAVTV 362 Query: 374 VRSELDHRS-AIGAFALVK 391 L ++ +GA ALV Sbjct: 363 SLGALGDKAEVLGAVALVL 381 >UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q6P6_CATAD Length = 429 Score = 334 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 156/394 (39%), Gaps = 32/394 (8%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV------ 65 +++ V +++ SR ++ + L+ A+V+ + LI GL+ E Sbjct: 15 PPNLREEGRLRVLQVLLASTTTSRPELVRLTGLSRATVSVLVADLISAGLVVEENGANGS 74 Query: 66 ----------------DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKV 109 + ++ + GR A+ + +AIG +G + L DL Sbjct: 75 GGSSGSSGSGGSSGTPEAESRSMGRPALPLALNRSVAYAIGADIGHAHVRVALCDLHGTP 134 Query: 110 LAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYM 168 + E +R + + + + ++ + V + VD D Sbjct: 135 VWETSRAKEVDRAPHETLDLAADLVRRALTENGVSGERVLGLGVGIAAPVDADGALSAEG 194 Query: 169 PHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGI 228 LE R + + +D + ALAEH +GA +D ED + +R+ G GAG+ Sbjct: 195 IMPGWTGIRPGPELERRTGLATELTNDANAGALAEHMYGAGRDIEDMVYIRLSAGIGAGV 254 Query: 229 ISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS 288 I+ GR+ G G GEIGH+ G C CGN GCLETIA+ A+ + + + Sbjct: 255 IAAGRLQRGAGGLAGEIGHLPAVRDGLVCRCGNRGCLETIASPVAVARLLQDSWG----- 309 Query: 289 RVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEAD 348 + + G + V+E G +G+ +A + L NP+ IV+ G++ Sbjct: 310 ----EPVAPGDLPALLAAGTPGTARVVEDTGEAVGRALAGLVTLLNPRLIVVGGDLAAIG 365 Query: 349 KVLLPAIESCINTQALKAFRTNLPVVRSELDHRS 382 + L + I AL + + VV L + Sbjct: 366 EPLFEPLRRGIARYALPSAARQVAVVAGRLGSSA 399 >UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetales RepID=Q0SE61_RHOSR Length = 400 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 91/409 (22%), Positives = 165/409 (40%), Gaps = 18/409 (4%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M + V+ LI +R +I + L+ +V L G Sbjct: 1 MACMRTPRSTTSPATG----GDVFALIRAGQATTRTEIGTLTGLSRTAVAARVSSLQASG 56 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVL-AEEHYPLPE 119 L+ E ++ STGGR + + + + +GR + + DL+ V+ AE+ Sbjct: 57 LVVEREEGVSTGGRPPVKLSFHVQAGVVLSAAIGRSRTQLAICDLAGDVIVAEDVEQEIG 116 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGL 178 + L + + +S + I + LPG VD + G P + + L Sbjct: 117 TSPAELMPVIAQRLIALRESLGETAGRTVGIGISLPGTVDTERGCSLNSPMMSGWDGVPL 176 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 L + FV +D + LAE G +D D +L++ G GAG++S G + G Sbjct: 177 QPFLADVTDAPVFVDNDANVMVLAERR-GERRDFADMLLIKASTGLGAGLVSGGVLQRGA 235 Query: 239 NGNVGEIGHI-QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 G GEIGH G C CG+ GC+E +A A+ + + + + I Sbjct: 236 LGAAGEIGHTKTAAAQGVVCRCGDVGCIEAVAGGWALVRNLQEQGR---------EVTHI 286 Query: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIES 357 + + A GD+ A +I GR +G+ ++ AINL NP+ +++ G++ +A + + Sbjct: 287 RDVITLALAGDAEARRMIRESGRQIGEVLSGAINLLNPEVVIVGGDMAQAYDTFVAGLRE 346 Query: 358 CINTQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAMLNGILLQHLLE 405 + A+ L ++ +G+ + +L+ + LL Sbjct: 347 TLYGNAIAVATQQLQILPWTHGELSGVVGSATMALDHVLSVRAVDRLLA 395 >UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35AB4 Length = 401 Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 167/391 (42%), Gaps = 15/391 (3%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ---ASTG 72 K N + + I + PI+R IAE++++ PA+VT LI G ++E+ + ++ Sbjct: 8 KASNRSRILECIYRNAPIARTDIAEETEITPATVTMNVTTLISEGFVRELGEVSTDEASS 67 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNA 132 GR+ + I ++IG+ + I + DL ++ + P E + A++ Sbjct: 68 GRKRVLIDIIPDRAYSIGLEFTQKALVICITDLKGRIRFQRTEPFNEELAGRITDAIIGG 127 Query: 133 IAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFV 192 + + E++ I +PG ++ + + +N+ +E+ + Sbjct: 128 VKDLVAESGISWDEIVGIGAAVPGHMNGSASSLI-TNRKTWQNFDPK-RIEQELPLPIVC 185 Query: 193 GHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP 252 ++ R +AL E+ F + + V G + +G +F+G N GEIGH V Sbjct: 186 ENNARCMALGEYLFSPQESPDSFAFFHVGMGMFCASVVDGEMFLGENYVAGEIGHTIVSE 245 Query: 253 LGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKG 307 G RC CG +GCL+T A+ + + L + + + TI+TI A + G Sbjct: 246 GGRRCECGKYGCLQTYASENHLIRNARLLYRNTPNTILRSLVSDDSQITIETITTAYSMG 305 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL--- 364 D + I ++LG TI+ + NP KI + G++ + + + I Q + Sbjct: 306 DPVIGMYIAEALKYLGITISNIAIITNPGKIFLHGQLFDNQD-IQNELMDYIERQLIFVD 364 Query: 365 KAFRTNLPVVRSELDHRSAIGAFALVKRAML 395 + + N+ ++ A+GA AL Sbjct: 365 RTYAGNVEILP-YGAADGAVGASALAILRFF 394 >UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH81_KOSOT Length = 386 Score = 333 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 82/396 (20%), Positives = 172/396 (43%), Gaps = 21/396 (5%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA-S 70 + N+ + ++ + ISR++++ + L +V+ I ++ + G+++E + Sbjct: 6 PKDTRIKNAITLLHILLKQDGISRVELSRITGLTKTTVSSIIKEFLAAGIVEESPTKPNG 65 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEH-YPLPERTQQTLEHAL 129 G+ IS+ + + +GV LGRH+ L D S KVL E + + ++ L Sbjct: 66 NVGKTPISLHIKKNAVYTLGVHLGRHNIKTVLMDASMKVLMESNGLSYKKNDPDSVLEKL 125 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKV 188 I ++ ++ ++ I + +PG +DP++G I P N L E +++++K+ Sbjct: 126 YLDINHIMEKAEKHGIKVGVIGIGIPGPLDPETGVIKCPPKFEGWINIPLGEIIQKKYKL 185 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ +D ALAE + G ++ ++ + + V+ G GAG++ N ++ G + VGEIGH Sbjct: 186 PVWIENDANVAALAEKWHGGAKYLKNFVYILVNEGIGAGVVINDELYQGTHDYVGEIGHS 245 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 G F LE + + ++ L+ +I+ + + Sbjct: 246 LFYVH------GQFKYLEDLYGVDVLTSQIK---------SCGLNAHSIEDVANLLKADN 290 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 + ++ + L + I+L NPQ + I G + L+ ++ ++ Sbjct: 291 KIVYSIVRDSAKWLSIVVLNVIHLLNPQAVFIGGTMAALGNYLIQPVKEIVSQYLFGD-- 348 Query: 369 TNLPVVRSELDHRS-AIGAFALVKRAMLNGILLQHL 403 V SE+ + AIGA L ++H+ Sbjct: 349 QETDVKLSEISDNAVAIGAGIYATAKWLEAKSIEHV 384 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 333 bits (855), Expect = 8e-90, Method: Composition-based stats. Identities = 109/403 (27%), Positives = 181/403 (44%), Gaps = 7/403 (1%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 + ++ ++ ++A + +L+ + +R+ IA ++ ++++ I +LI GL++E + Sbjct: 6 SAPLDLAAIRARHTALLLQLLWERD-RARVDIARDLGMSRSAISSIVSELIGVGLVQEGN 64 Query: 67 QQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQT 124 + S GRRA + R + + LG + L DL + LA P Sbjct: 65 TRGSGRAGRRATLLSLNARAAALLAIDLGASHVRMDLMDLRCRTLASRTVPHEVISGPAE 124 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALE 183 H LL + + + +PG VD D+G++ P++ + + EAL+ Sbjct: 125 TYHLLLRLADAVQREAHVPADHVALVGLGVPGPVDQDTGRVIRPPNMPGWDGEPVREALQ 184 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 + V +D A AE FG + D I V+ G GAG++ GR+ G G G Sbjct: 185 RHLGLEVLVDNDANLGAQAEARFGPHRGVSDLIYVKAATGIGAGVLLGGRLHRGVRGGAG 244 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 EIGHI + G GN G LE+ AA + G + + D T+ + + Sbjct: 245 EIGHISINEQGPVGRSGNPGSLESYAAAQVLVATAEARRAAGAPTLL-TDPVTLPALVRH 303 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A D LA E+ E VG HLG I+ A+NLFNP +VI G + EA V L A+ S ++ Sbjct: 304 AET-DPLARELWEDVGHHLGVAISTALNLFNPAVVVIGGRLAEAGPVFLNAVRSSALSRT 362 Query: 364 LKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGILLQHLLE 405 ++ + S L + +GA A++ +L L HL Sbjct: 363 MQINAERTRIDLSTLGGDAGVLGAGAMMLDQLLTSSGLPHLYA 405 >UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3V9_9CLOT Length = 386 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 88/402 (21%), Positives = 168/402 (41%), Gaps = 33/402 (8%) Query: 1 MTPGGQAQIGNV---DLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLI 57 M A+ GN +L++++N + + ++ + P+SR Q+A L+ +V+ I +L+ Sbjct: 1 MEVNAMAKGGNPRHLELIRRINRSLILNMVKERQPVSRAQLARALNLSKTTVSSIVDELV 60 Query: 58 ERGLIKEVDQ--QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY 115 + L+ E + GR ++ + R+ + IG+ + + + + DL+ + L E Sbjct: 61 RKKLLVEYGDCCPSGGAGRPSVMLGFNPRSAYCIGIDIASANLRLIITDLAGEALYETKR 120 Query: 116 PLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVEN 175 P + L+ + + + K+ + + + +PG+V G + + N Sbjct: 121 P-----PSSRMGELIGVVEEAVRDCGLKMEAVFGMGIGVPGIV-TAEGSVVRAKFLGWSN 174 Query: 176 WGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIF 235 + L +EE F FV + + AL E + G+ +D + VR+ G G +I G++ Sbjct: 175 FPLKRLMEEHFPFPVFVENGVNLAALGERWLGSGDQVDDMLFVRIGTGIGGAVICGGQLI 234 Query: 236 IGRNGNVGEIGHIQVEPL---GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPL 292 G GN GEIG+ G G G LE + AA+ Sbjct: 235 HGAGGNAGEIGYFLESRDVELGNVNQPGQQGVLERKCSGAALTGHGRP------------ 282 Query: 293 DDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLL 352 + + A +GD A+ V+E R L IA ++L P K VI G+++E ++ Sbjct: 283 ----TEELFAAYGQGDREAARVVEPFIRDLSVAIANCVSLLGPAKAVIGGDVSEQMSPVI 338 Query: 353 PAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAM 394 + + L R ++ + S A+GA + Sbjct: 339 YRLREEVER--LTPIRADVCL-ASLGGRAGALGAVFHAMTEV 377 >UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavida DSM 17836 RepID=D2Q094_9ACTO Length = 423 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 131/318 (41%), Gaps = 15/318 (4%) Query: 86 FHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLR 145 IG+ +G + D +L P + + E A+ + Sbjct: 30 ALTIGIDIGGTKVAAGVVDPEGNILDRLRRDTPTKDPKETEDAIAEVVHDL-----ESRH 84 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 ++IA+ + G VD + + PH+ + L +A+E R + V +D + A +E Sbjct: 85 DVIAVGIGAAGFVDGTRSSVLFAPHLAWRHEPLRDAVERRLGLPVVVENDANAAAWSEWR 144 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 FG Q + V + G G I+++G + G+ G GE GH+QV P G RC CGN GC Sbjct: 145 FGGGQGESHLVCVTLGTGIGGAILNDGALQRGKFGIAGEFGHMQVVPGGHRCECGNRGCW 204 Query: 266 ETIAANAAIEQRVLNLLKQG--------YQSRVPLDDCTIKTICKAANKGDSLASEVIEY 317 E A+ A+ + L G + + + A GD +A E++E Sbjct: 205 EQYASGNALTREARELALSGSPVAHNLLRAAEGDPRRINGPMVTELAKDGDPVAVELLED 264 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA-FRTNLPVVRS 376 VGR LG +A +P VI G +++A ++LL FR +VR+ Sbjct: 265 VGRWLGIGLANLAAALDPGTFVIGGGVSDAGELLLAPAREAFKRTLTGRGFRPEARIVRA 324 Query: 377 ELDHRSA-IGAFALVKRA 393 L + +GA L + Sbjct: 325 VLGPEAGMVGAADLAREE 342 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 91/316 (28%), Positives = 155/316 (49%), Gaps = 8/316 (2%) Query: 86 FHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA-LLNAIAQFIDSYQRKL 144 +GV +G + + +++ + P ++ L + +A+ + + + + Sbjct: 4 RWYVGVDVGGTTIKMAFLTTAGEIVDKWEIPTNKQDGGALITTNIADALDKRLSGHHKSK 63 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 +LI I + PG ++ D+G I++ +I ++ L + LEE K+ V +D AL E Sbjct: 64 SDLIGIGLGAPGFIEMDTGFIYHAVNIGWRDFPLKDKLEEETKLPVIVDNDANIAALGEM 123 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP-LGERCHCGNFG 263 + GA ++ +L+ + G G GI++NG I G NG GEIGHI V P G C+CG G Sbjct: 124 WKGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITVIPEGGAPCNCGKTG 183 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRVPLD-----DCTIKTICKAANKGDSLASEVIEYV 318 CLET+A+ I + + + +S++ LD T K + AA+ D+ A V++++ Sbjct: 184 CLETVASATGIARIATEGVTEHKESQLALDYDKHGVLTAKDVFSAADASDAFALSVVDHI 243 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 +LG IA N NP+KIVI G +++A LL I+ AL + L Sbjct: 244 AYYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPIKQHFEAYALPRVADGAEFRIATL 303 Query: 379 DHRSA-IGAFALVKRA 393 + + IG LVK+ Sbjct: 304 GNDAGVIGGGWLVKQQ 319 >UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C4_ENTGA Length = 388 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 158/391 (40%), Gaps = 22/391 (5%) Query: 16 KQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST--GG 73 + N + LI +SR ++ + L A+ + I ++LIE L+ E+ S+ GG Sbjct: 13 RTKNESLCLELIMNNHNLSRADLSTMTGLTKATTSAIVKKLIEDQLVIEIGTGESSNVGG 72 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 R+ I + ++ +I + +G + L L + + + T++ Sbjct: 73 RKPIILQYNGKSGLSISIDIGYNYINGLLAFLDGEEVQSIQKKPIHLDEHTIKDHFTELF 132 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 F S +I + + + G V G + + PH ++ + EE ++ Sbjct: 133 NHFKKSLPETYYGIIGVVIAVHGPV--HEGNVIFTPHHELAQIPFRDIAEELVDYPVYLE 190 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 ++ AL E+ F S I + +H G GAGI+ NG + G NG GEIGH V Sbjct: 191 NEANLSALGEYTF--SSKSSSLICINMHSGIGAGIVQNGILQTGTNGLAGEIGHQIVVLD 248 Query: 254 GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASE 313 G C CGN GCLE A + + + + +D + + D A Sbjct: 249 GIECPCGNHGCLEMYA--------ANKVCFEKFANIKSMDYVNAIILREYYQNNDPDAIH 300 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 V E +L I + ++P+ I++ + ++ + ++++ F + V Sbjct: 301 VTEENVHYLSAGINNLVVHYDPEVIILNSSLYHEIPDMIGQLTKSLHSR----FSEKVIV 356 Query: 374 VRSELDHRS-AIGAFALVKRAMLNGILLQHL 403 S LD ++ +G + LN ++HL Sbjct: 357 RSSLLDEKATLLGGLVFNLQRFLN---IKHL 384 >UniRef50_B2GIX7 Putative NagC family transcriptional regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GIX7_KOCRD Length = 421 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 169/394 (42%), Gaps = 15/394 (3%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 + G+ ++ N V + G +++ +IA ++ LAP++V+ I ++L L Sbjct: 35 GADRASAPGSQAALRLANRRRVVDAVRGLGAVTQARIARETALAPSTVSSIVKELTACDL 94 Query: 62 IKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PER 120 + + GGRR + H +GV +G + L DL+ ++LA+ L P Sbjct: 95 LT---VEPDHGGRRGQRVRFSASAGHLLGVDVGHRHVAVALADLNLEILAQRRAELSPRH 151 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLV 179 + + + D ++ + LP VD + + + Sbjct: 152 GAREVLDVARGMADELRDELGIPAERVLRAGIGLPAPVDAQGRGLDSAVILPHWSGLDVR 211 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 E V +D + A++EH GA + D ++V G GAG++ G ++ G Sbjct: 212 ELAAHVLGCPVVVENDANAGAVSEHALGAGRGARDMAYLKVSHGVGAGLVLGGTLYRGAT 271 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGHI ++ C CGN GCLET ++AA+ + V ++ Sbjct: 272 GAAGEIGHITLDERAGLCRCGNRGCLETFVSSAAVLELVR---------PSGQPVESVSD 322 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + AA GD S V+ GR +G +A NL NP+ +V+ G++ A ++LL + + + Sbjct: 323 VVDAALAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPELVVLGGDLARAGELLLEPLRTAV 382 Query: 360 NTQALKAFRTNLPVVRSELDHRSAIGAFALVKRA 393 + L + VV SEL R+ + L+ R Sbjct: 383 DRYTLHGSS-PVRVVPSELGPRAHLTGALLLARE 415 >UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobacterium dentium RepID=D2Q6V0_9BIFI Length = 390 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 171/392 (43%), Gaps = 15/392 (3%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + G+ +++ N A + I ++G +++I++AE + L+ +V+ QL+E G ++ Sbjct: 1 MARRTNGSQTSLRRANKANLLESIHKFGAMTQIELAEITGLSTGTVSTQVHQLVEEGKLE 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 + + GRRA + +G+ + R D + + D S ++AE PLP + Sbjct: 61 THNTIRN--GRRATLVALSHDQGLGVGLSITRRDLFLVIIDYSKDIIAEHRLPLPPKHKA 118 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEA 181 T + I + +++ E++ I V L VD + + + + Sbjct: 119 DTTLERAIRLINETLENAGTDAGEIVGIGVALGAPVDFHAQTAAIPGILPGWDGIDIHTP 178 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L F V V +D + A+ E G + ++ + + + G G+GI+ NG I G G Sbjct: 179 LTTAFHVPVMVDNDANAAAICEARMGVALGKQNFVYIGTNDGVGSGIMVNGDIMHGVTGL 238 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GEIGHIQV+PLG C CGN GCL TI A + + V + T++ + Sbjct: 239 AGEIGHIQVDPLGSICSCGNRGCLNTIVDEARLVSLLS----------VTHGNMTMEDLV 288 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 + AN GD VI +G + +P+ +V+ G + + + + Sbjct: 289 QTANAGDPGCRRVIADAAVRIGTVASDLCISVDPEMVVVGGSLAMSGDTFIEPFSETLQR 348 Query: 362 QALKAFRTNLPVVRSEL-DHRSAIGAFALVKR 392 T + V+ ++ D SA+GA +V Sbjct: 349 LLFPNALTPIQVLAAQYPDSGSALGAAIMVIE 380 >UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFQ9_9ACTN Length = 405 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 95/397 (23%), Positives = 166/397 (41%), Gaps = 14/397 (3%) Query: 7 AQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66 + V V+Q N + R + G SR IA +S L+ ASVT + +LI GL+ E Sbjct: 10 SAPATVSDVRQRNRSQALRSVILTGETSRAAIARESGLSVASVTNLISELISEGLVMEAG 69 Query: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ-QTL 125 AS+GGR + + +G +G + LFDLS + E E + + Sbjct: 70 SVASSGGRPVTLLAPNPSGAYFLGADVGERGVAVELFDLSMTRIDREFRGGREGEPIEAI 129 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLV--DPDSGKIHYMPHIQVENWGLVEALE 183 L A+ + +I I + LPG+V D + ++ Y + + + + Sbjct: 130 AADLDEALNALRERNPAAWDRMIGIGLGLPGIVESDAEGRQVLYAQSLGWSPIPVADLVS 189 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 + F + ++ A+AE + GA++ ++++V + RG G I+SNG + G N + G Sbjct: 190 H--DIPVFAENGAKTQAMAELWDGAARGVNEALVVLLGRGVGLAIVSNGELARGLNSSAG 247 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E GH+++ G C CG GC+E AI + S + + Sbjct: 248 EWGHVKIVRNGRLCRCGGRGCVEAYLGADAILELWREAGGVFDGSGWG-------AVGQL 300 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCINTQ 362 D +A V++ + LG + +NL NP++++I G + + L +E + Sbjct: 301 LESHDPVAVGVVDELIETLGSALGGLVNLTNPERVIIGGWVGLRLMEALASRMEEATRAE 360 Query: 363 ALKAFRTNLPVVRSEL-DHRSAIGAFALVKRAMLNGI 398 AL + A+GA + A+L Sbjct: 361 ALARPGGQFSLHACSFGGDTVALGAAIMPLEALLAAP 397 >UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KQ9_SYMTH Length = 391 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 98/390 (25%), Positives = 171/390 (43%), Gaps = 17/390 (4%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + N L+KQLN AV I GPISR+++A + L+ +VT I R L++ GL++E Sbjct: 1 MPRPANARLMKQLNRQAVLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEK 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSS--KVLAEEHYPLPERTQQ 123 S+GGR I ++ + V L L DLS +V AE Sbjct: 61 GLGQSSGGRPPIMLLFNPAARFVLAVCLEGERLWGGLADLSGALQVEAEGVLSPDPHDPA 120 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQV-ENWGLVEAL 182 ++ + + ID + L A++V +PG + G + + P + + L + L Sbjct: 121 ---RSVCDFLQGLIDRSGVEASRLAAVAVGVPG-IAHTEGTVSHAPSLGWWQEVPLRDRL 176 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + F V V +D+ +AL E++ GA + L+ V G GAGI+ +G +F G Sbjct: 177 RQCFGVPVVVENDVNLMALGEYFQGAGVGVANLALMHVSEGIGAGILIDGNLFRGARNAA 236 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GE+G++ + PL R +FG E ++ AI Q++ L + ++ + + Sbjct: 237 GEVGYLPLGPLSPR-RPQDFGLFELHYSSRAIRQQLQAALPEAPGDDGRP----VRRLRE 291 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A G A + RH +A + NP+ +++AG+ + + L + + Sbjct: 292 LAEAGLPWARSLFGDALRHWAHAVASITCILNPELVLLAGDAVDCGREGLSEVNRIVADL 351 Query: 363 ALKAFRTNLPVVRSELDHRSAI-GAFALVK 391 + + L R+A+ GA A+ Sbjct: 352 VP----DPPEIRFAVLGSRAALTGAVAMAL 377 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 103/407 (25%), Positives = 176/407 (43%), Gaps = 8/407 (1%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + + +N V RLI + G +SR +A + L +V+ + +LIERGL+ Sbjct: 2 TTLGEKATRQHTRDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELIERGLVI 61 Query: 64 EVDQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 E G GR + + + + + L L V + +T Sbjct: 62 ETGLATGGGIGRTPMLLSVAEWSRPVAAISVNADSVEGALVSLRGNVGRRISRSIQGQTG 121 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + L + + I + + L+ I V PGL++ SG I ++ + L + L Sbjct: 122 ADALNTLQETLDELIQTANQP---LLGIGVTTPGLINASSGMIVRAVGLEWADLPLGQLL 178 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 ER+ + V +D + LALAEH FG + + +++++ +G GAGI+ NG+++ G Sbjct: 179 HERYGLPVKVVNDSQCLALAEHLFGEWRGVANLVVLKIGKGVGAGIVLNGQLYAGEGFGA 238 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP--LDDCTIKTI 300 GEIGH+ G C CGN GCLET+ + A+ + + S + D ++ I Sbjct: 239 GEIGHLAFTANGLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLGRI 298 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 + A GD +A VI G +A I+L + + ++I G IT + + + Sbjct: 299 AEGAAMGDPVAQHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRREVA 358 Query: 361 TQALKAFRTNLPVVRSELDH-RSAIGAFALVKRAMLNGILLQHLLEN 406 +AL A + + + IGA A V L G++ H E Sbjct: 359 QRALPALVRDTEIRLAPAPTITPLIGAAAPVLTGEL-GLIRLHRREE 404 >UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile RepID=C9XQA7_CLODC Length = 408 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 173/394 (43%), Gaps = 27/394 (6%) Query: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 + ++++N V I + GPISR IA L A+++ IT++LI+ L+ E+ Sbjct: 25 TDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGIGN 84 Query: 70 ST--GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 ST GGR+ I +V ++ + +G +L L ++ + Q + Sbjct: 85 STHSGGRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKKL----TDIQVSKD 140 Query: 128 ALLNAIAQFIDSYQRK----LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 ++ I + I+SY ++I +++ + G+ + + + P+ + L L Sbjct: 141 NVIQLIDEIINSYNISKIDTPYKVIGLTLAIHGITCENK--VLFTPYYNLNEIDLYSILS 198 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 +++ + ++ ALAE+ F + + +H G G+GII N +++ GRNG G Sbjct: 199 KKYDFPIHIENEANLTALAENTFSTV--HNSLLSLSIHSGFGSGIIINNKLYSGRNGMSG 256 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 EIGH + P G+ C CGN GCLE + + +++ S + + + Sbjct: 257 EIGHTIIMPNGKLCPCGNRGCLEQYCSEKKVFEQL--------SSLENIPKIDSDIVKQL 308 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 + + A +VI +L I AI + P+ I + +I +P I Sbjct: 309 YYEDNQNAKKVIHEFCSYLTIAINNAITTYAPEIIYLNSQIISD----IPEILQITKDML 364 Query: 364 LKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLN 396 + +F + + S L +++ G A+ ++ LN Sbjct: 365 VSSFNKGINIEISSLGSEASLYGGSAVNIKSFLN 398 >UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q736_CATAD Length = 402 Score = 330 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 98/406 (24%), Positives = 169/406 (41%), Gaps = 20/406 (4%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 MT Q ++ N A + + +R +A S L+ A+++ + LI G Sbjct: 1 MTSRAQKTT---RDLRWHNRADLLTRLYLGEATNRNDLARASGLSAATISNVVSDLIGDG 57 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP--LP 118 L+ E Q+S GGR + H +G+ +G + + LFD + +AEE P +P Sbjct: 58 LVGENGSQSSAGGRPRSLLRVLPAFGHVVGIDIGETEIRVGLFDWTLHPVAEEARPVDIP 117 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL 178 Q + +L+ IA + +L+ + + +PG G + + P + L Sbjct: 118 RVPPQQVADQVLSEIAAVTARAGIAVDDLLGVGIGVPG----AGGSVIHAPTLGWSAVPL 173 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 L +R T + + +L AE + GA++ E ++ + + G G + + G Sbjct: 174 AGLLRDRLGFTPDIDNGAMALGQAEAWRGAARGAERAVALLLGTGAGGAL----SLAAGP 229 Query: 239 NGNV----GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 G E GH V+ G C CG GCLET AI R + ++ Sbjct: 230 GGRARSFTMEWGHTVVDLEGPHCRCGARGCLETYIGAEAILARYAATPGSTPLAEDGVEA 289 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA--DKVLL 352 + + +A+ +S A EV++ +LG I+ INL P +++I+G D LL Sbjct: 290 QLSELVARASQHHESAALEVLDATATYLGVGISNLINLVAPDRVIISGWAGALLCDAALL 349 Query: 353 PAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNG 397 PA+ + AL + + EL + A+GA L +L Sbjct: 350 PAVRRVVRRHALPYLQEFTRIEPGELGPSATALGAATLPVARLLAD 395 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 164/375 (43%), Gaps = 10/375 (2%) Query: 26 LIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE--VDQQASTGGRRAISIVTET 83 ++ GP+SR+ +A + ++ A+VTK R ++ G + E ++ A GR + Sbjct: 22 MVLTEGPLSRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITP 81 Query: 84 RNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRK 143 IGV++ + + DL +++ H LP+ T+ L + + +D+ Sbjct: 82 DREFVIGVKVTADEVIGVVADLKARIRNSAHRQLPDCEPATVLATLAALVEELLDADPEL 141 Query: 144 LRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAE 203 + + V + G VD G + P + ++ L + + + V +D+++L +AE Sbjct: 142 RGKTRRMGVAVSGDVDRVRGVVRLSPLLGWQDVDLAGPVGDATGLVVVVENDVKALTVAE 201 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFG 263 H+FG +D LV V G G GI++ GR+ G G GE+GH+ V+ G CHCG G Sbjct: 202 HWFGDGVGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGARG 261 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLG 323 C+E IAA AI R L + D T + A G + G +G Sbjct: 262 CVEAIAATEAIVGRARLLTGR--------DGLTFTEAAELARSGSPEVCALFSEAGTAIG 313 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA 383 I +NL P++IV++GE +A + I T A A +R A Sbjct: 314 LAITAVVNLIGPERIVVSGEGLDAYDLFETEIRQAYATHAFGAAARCPLTIRPLPFEEWA 373 Query: 384 IGAFALVKRAMLNGI 398 GA A+ + + Sbjct: 374 RGAAAVGIQTLFAPA 388 >UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillus sp. B14905 RepID=A3I7X3_9BACI Length = 383 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 92/391 (23%), Positives = 177/391 (45%), Gaps = 12/391 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + + +++ N V I Q PISRIQ+++ ++++P ++T+I ++L G I E Sbjct: 2 KKQDQVQMRRQNKYIVLDAIRQMAPISRIQLSKYTKMSPTTITRIVQELEAEGFILEGVS 61 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLE 126 + + GRR I + IG+ + + + D K++A + + + Sbjct: 62 EETAIGRRPTLIHMREDALYTIGIEIDCFTIRLGILDFLGKLIAFQEIKCSIKHRYEEAI 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 H L N+IA + YQ +L+ I + +PG+++ + G I ++ EN + E L F Sbjct: 122 HLLKNSIATIMSEYQIAQEKLLGIGIGVPGVINNEEGIIVSSEQLKWENCRIGEDLNGVF 181 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 V ++++ +AE + + ILV + G GA I+ NG ++ G GEI Sbjct: 182 DCEVIVDNELKMQIIAEIGDIYTPLYSNCILVGMGTGVGASILLNGEVYRGIQNKAGEIS 241 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 HI + P GE CHCG GCL + + R + L +I+ + + ++ Sbjct: 242 HITINPFGEMCHCGKRGCLSMYISEMTLLNR----------TPKNLTIQSIEEVLQCVDR 291 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 G+ A ++ + V +L I + L+ P+ ++++GEI E + + K Sbjct: 292 GEQWAVDIQQDVATYLAIAINNLVCLYEPEAVIVSGEIIEHNVTFQKLLSEKCKQYIWKE 351 Query: 367 FRTNLPVVRS-ELDHRSAIGAFALVKRAMLN 396 + + + S +L GA ++ +L+ Sbjct: 352 LQPHFVLQFSNQLKEGVVKGAALQAQKQLLS 382 >UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL5_9FIRM Length = 380 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 71/375 (18%), Positives = 156/375 (41%), Gaps = 13/375 (3%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 + +I +SR +IA + ++P S T+I L E GL++++ ++ GR+A+ + E Sbjct: 4 ILDIIRDSREVSRSEIARMTGMSPTSATRIVGSLEECGLVRDMAAVSNGVGRKAVMLDVE 63 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT--QQTLEHALLNAIAQFIDSY 140 F+ IG+ + + + + + +++A P P + + + + Sbjct: 64 ENAFYCIGLDISETNLKLCILNFGGQIVARGAAPAPGDSFQPEEVVEIFYRMYQRLAIQA 123 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLA 200 + + ++ AI G VD +G++ + I+ + + + +E RF + +V +D++ Sbjct: 124 KIPMEKVAAIGAGAVGTVDSKTGEVIFGDLIRWSHVPIGQMIEARFGLPTYVDNDVKCAI 183 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEP-LGERCHC 259 + + + +D +L+ G G +I GR+ G + GEIGH V+ G C C Sbjct: 184 IGDCSTPPIKGADDVVLLSFGCGVGGAVIHRGRLVRGSINSAGEIGHTIVDYTDGRLCSC 243 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 G GC I Q+ +++ I A + + A +++ + Sbjct: 244 GRRGCAAAYLTKDQIIQQAAK---------SCPGISSLEEIMAAWERREPWAEALLDRIS 294 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 ++ T++ A NP+ +++ G++ L + + R +RS L Sbjct: 295 TYMAITVSNAACFLNPRNMILGGKLMNESPFLFDLVLEKYSAMMYPPLRGATTFIRSPLG 354 Query: 380 HRSA-IGAFALVKRA 393 + +G + Sbjct: 355 TDATCVGGAMIAVEK 369 >UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH Length = 411 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 127/402 (31%), Positives = 220/402 (54%), Gaps = 4/402 (0%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 P + G++DL++QLN VY ++++ +SR ++ + L+PAS+TKITR+L++ GL+ Sbjct: 8 PMNEIVKGSIDLIRQLNYGLVYASLEEHKELSRTDLSRLTGLSPASITKITRELLDGGLV 67 Query: 63 KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 + + GRR + R F + +RLGR + LFDL+ + LA + E + Sbjct: 68 VTCGESSVGRGRRQTLLRINERRFQFLSMRLGRGYVDMALFDLAGRSLARHRHVFSEGER 127 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 L +L+ AI F+ +K L I++ LPG V+ SG + + P + NW L L Sbjct: 128 ADLLASLVRAIEGFL---PKKALRLACIALCLPGQVERHSGMVKHFPFYDLRNWPLGPTL 184 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 +E F V V D+R+ AE +GA+++C D++LV VH G G++ NG++ + + Sbjct: 185 QEAFAVPVLVSGDVRTWIQAEREWGAAKNCADAVLVFVHNDIGVGMVVNGQLIESESALL 244 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 G++ H+Q+EP G+RC+CG FGC T+ N A+E + +L ++ + +P + TI+ +C+ Sbjct: 245 GDLSHLQLEPYGQRCYCGGFGCACTLVTNQALEAQYRDLRERMQEYDLP-ESVTIRELCE 303 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A G+SL +++ L + ++ I L NP K+++ GEIT AD++L P + + +Q Sbjct: 304 LALAGNSLCQDILHQAAGRLSRVLSNLICLLNPGKLLLGGEITRADRLLFPMLHQSLASQ 363 Query: 363 ALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLL 404 + L + + V +A+ +G LL LL Sbjct: 364 LPAEYLVRLQIESTHFYEDPTKPTSVQVHKALRDGSLLLDLL 405 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 175/366 (47%), Gaps = 9/366 (2%) Query: 34 SRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETR-NFHAIGVR 92 + +++ + + S++KI +L+E L+ E STGGRRAI + N + + V Sbjct: 25 TIAELSGLTNKSIPSISKIVNELLEDKLLIEDGLAPSTGGRRAIHYALNAKLNCYILTVA 84 Query: 93 LGRHDATITLFDLSSKVLA-EEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAIS 151 + +H ++ ++DL +K + + +++ I + + + ++ I Sbjct: 85 IDQHYTSVIVYDLHNKEVTPVHTIENHLDHPEEAFSNIVSLINELLTKHHLSADNILGIG 144 Query: 152 VILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQD 211 V +PG VD SG + + + + E F + F+ +D ++A+AE FG +++ Sbjct: 145 VSMPGFVDNVSGT--NGSFKDFQLFNIKKEFERVFAIPTFIENDSTAIAIAEQNFGKAKE 202 Query: 212 CEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAAN 271 ++++ V G G GII + ++F G +G GE HI + + C CG GCLE A+ Sbjct: 203 ISHALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGCLEVEASL 262 Query: 272 AAIEQRVLNLLKQGYQSRVPLDDCT-----IKTICKAANKGDSLASEVIEYVGRHLGKTI 326 +A + L G +S + +D + + AA GD LA + LGK I Sbjct: 263 SAAVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSAYMLGKGI 322 Query: 327 AIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGA 386 A I++ NPQKI+I+G EA K+L+P I++ I+ + + S++ + IG Sbjct: 323 ATLIHIMNPQKIIISGRGAEAGKILMPQIQTAIHEFCIPKISNKTVLEISDMKNAQLIGT 382 Query: 387 FALVKR 392 ++V Sbjct: 383 ASIVFE 388 >UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MXJ9_SACVD Length = 413 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 95/408 (23%), Positives = 159/408 (38%), Gaps = 47/408 (11%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 + V++ N A V I ISR +A ++ L A+V+ + +L+ L++E +Q Sbjct: 6 PADQHTVRRHNCALVLDTIAASPGISRAGVAARTGLTKATVSSLVDRLVTASLVREDGRQ 65 Query: 69 -ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ--TL 125 S GRR S+ H +GV + T L L+ +V E + R + + Sbjct: 66 HRSGPGRRGTSLSLSPHGPHGLGVEIAVDHVTTCLIGLTGEVRDEHTRRVDNRGRSVGRV 125 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 + + + +D R + I V +PGLV+ +G + P++ + L+ L R Sbjct: 126 LARIAREMNEALDRAHRNGIVVGGIGVAVPGLVEAANGWVRMAPNLGWRDVDLITELHRR 185 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQ------------------DCEDSILVRVHRGTGAG 227 V E G + + V G GAG Sbjct: 186 VAVP-----------FGELVVGNEADLAALAELAAPRLHCEDAAPDSFVYVSGEVGVGAG 234 Query: 228 IISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ 287 I+ +G +F G +G GE+GH V+ G RC CG GCLE +A AI R Sbjct: 235 IVLDGELFRGTHGFGGELGHFPVQQRGPRCSCGARGCLERLAGQDAILDRA--------- 285 Query: 288 SRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 + T+C GD A+ GR LG ++ +NL + +V+ G Sbjct: 286 -----GVDDVDTLCVRLEDGDRTAAAAARSAGRLLGTALSGVVNLLDVSTVVLGGIYARL 340 Query: 348 DKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAM 394 L + + + + + ++ V RS + +A+ GA R + Sbjct: 341 YPWLAGPLHTELTARVVSTPWRSVDVRRSTVGPEAAVRGAAISALRTI 388 >UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobacterales RepID=C5RVI1_9THEO Length = 315 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 144/309 (46%), Gaps = 7/309 (2%) Query: 90 GVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLRELI 148 GV LG + L D ++ P E+ + + + ++ + KL +L Sbjct: 7 GVDLGGTKISTGLVDEKGNIIRSTKIPTMAEKGPEEVIKRIEQSVYDVLKEAGLKLSDLK 66 Query: 149 AISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 + + PG +D G + P++ +N +V+ L + V + +D + A+ EH FG Sbjct: 67 GVGIGSPGPLDAKRGVVISPPNLPGWDNVPIVDILSHKLGVKVKLENDANAAAIGEHLFG 126 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A + ++ + + V G G G+I G+++ G N N EIGH + G RC+CGN+GC E Sbjct: 127 AGKGIDNFVYITVSTGIGGGVIIEGKLYSGENSNAAEIGHHTINFNGPRCNCGNYGCFEA 186 Query: 268 IAANAAIEQRVLNLLKQGYQSRV----PLDDCTIKTICKAANKGDSLASEVIEYVGRHLG 323 A+ AI + ++ G + + + + +AA GD A E+++ +LG Sbjct: 187 FASGTAIARFAQEGIQNGKDTMIRDLAKDGVVKSEHVFEAAKLGDEFAKELVDNEAFYLG 246 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA 383 I+ + +NP+KI I G ++ +L + I +ALK VVR+EL Sbjct: 247 VGISNIMAFYNPKKIAIGGGVSTQWDMLYDKMMETIKKKALKPNAEVCEVVRAELGENVG 306 Query: 384 -IGAFALVK 391 +GA AL+ Sbjct: 307 VLGAAALLL 315 >UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8E8_9ENTR Length = 377 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 88/366 (24%), Positives = 164/366 (44%), Gaps = 10/366 (2%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 + + RL+ +SR IA++ +L+ A+++ + ++++ GL++E +A+ GR + Sbjct: 3 NAHQQQIIRLLIASHGMSRTAIAQKMKLSKAAISTLIKEMLNAGLVEESIPEATGQGRPS 62 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQF 136 + + + + +G L T+ L D+ + LA PL L A+ +AI Sbjct: 63 VLLKMRADSAYFLGASLLGEAITLVLIDMHGRTLATRVLPLN-LDPHQLTRAIADAIPSL 121 Query: 137 IDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDI 196 + +LI + V L G VD + ++ L + L+ + + + +D Sbjct: 122 VTQQGISPDQLIGLGVTLSGFVDEHQAVCVQSALLGWKDVPLADMLKAQTGLEVSLENDA 181 Query: 197 RSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGER 256 ++LA++E FG ++ + L+ G G+ G++ G +G GEI H +EP G Sbjct: 182 KALAVSEKIFGLAKKVRNFTLISHSDGIGSAHFFQGQLHRGAHGGAGEIAHCTIEPGGRP 241 Query: 257 CHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIE 316 C CG GCL+T+A+ AI + + + T+ + A KG S A ++ Sbjct: 242 CRCGKRGCLDTLASLTAIREHMRDKAIAAQ---------TLPELETQAIKGSSAAIAILH 292 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 G LG IA + + +P+ IVIA D +L + I+ L + P+ Sbjct: 293 QAGNALGLAIANIVQMNDPELIVIAHHPGAFDGLLKTVVMQAIDANVLPSIMGKTPISTI 352 Query: 377 ELDHRS 382 L+ S Sbjct: 353 VLNDES 358 >UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=2 Tax=Clavibacter michiganensis RepID=B0RFZ3_CLAMS Length = 444 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 164/413 (39%), Gaps = 22/413 (5%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQY-GPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + N+ + N V + + SR +IAE++ L+ +VT ++R+LI+ GL++E Sbjct: 24 MRRGTNLPAIGGYNRTVVLDAVRRAAEGASRSEIAERTGLSAQTVTNVSRRLIDEGLVRE 83 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQ 123 G+ + A+GV + T L DL VL P P + Sbjct: 84 GGTVIRGPGKPRTLLHLVAGGRFAVGVHMDPAVITSVLLDLEGTVLRHVSSPTPSASRPD 143 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEAL 182 + + + I ++ + + PG +D +G + P + + L AL Sbjct: 144 EVVALVARLVDGLIAGAGVDRGAVLGVGLAAPGPIDVGAGLVLDPPMLPHWRHVPLRSAL 203 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + + D+ + A+AE +FG D V G G G++ G G + N Sbjct: 204 STATGLPVLLEKDVTAAAVAELWFGPG-DRRHLAFVYYGTGFGTGLVLGGEPVRGASSNA 262 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLN--LLKQGYQSRVPLDDCTI--- 297 G+ GHI V G RC CG GC+ + A+ ++ + +L+ G S L++ Sbjct: 263 GDAGHIMVAARGRRCTCGRVGCVGELITPHALVRQAVEGGVLRAGDVSDAALEEAAASGD 322 Query: 298 -----------KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE 346 + A+ D A ++E RHL + I I +NL + ++V G Sbjct: 323 AVDMRLIGEAFHALAARADTEDGSARRIVEAAARHLARAIVIQVNLLDLDEVVCGGPFWH 382 Query: 347 -ADKVLLPAIESCINTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNG 397 +++L + + + + VV S + +A+GA LV + Sbjct: 383 PIARLVLETLPEEVRRSPALIAKHPVRVVESAVGEDVAAVGAACLVLDNAFSP 435 >UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATI4_STRRD Length = 457 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 113/430 (26%), Positives = 176/430 (40%), Gaps = 33/430 (7%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 GG AQ +++ N + V R + +G SR IAE + L A+V+ + +L+ER L+ Sbjct: 11 AGGAAQPAGHASLRRTNLSLVLRHLRDHGSSSRADIAEATGLHRATVSNLMAELLERRLV 70 Query: 63 KEVDQQ-ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-- 119 +EV + A T GR ++ + + +G+ + + DL +VL E Sbjct: 71 REVGIEHAGTVGRPRRAVALDGAHVGVLGLEINVDYVAVHGTDLGGRVLVERRVGFDAMG 130 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLR-------------------------ELIAISVIL 154 L Q ID R + I V + Sbjct: 131 SGTNHSLRELGRVARQAIDELTRAGAGPSGLGPGDLAAAGASGIAAAGGGIRVAGIGVAV 190 Query: 155 PGLVDPDSGKIHYMPHIQVENWGLVEALEERFK---VTCFVGHDIRSLALAEHYFGASQD 211 PGLVD G + P++ + L L V +D ALAE+ G + Sbjct: 191 PGLVDVGHGVVALAPNLGWRDVSLASRLSVALGDVRAPVTVDNDANLAALAEYTSGVAAG 250 Query: 212 CEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAAN 271 D + + G G GII GR+ G +G GE+GH+ V+P G RC CG GC ET Sbjct: 251 TADMVYLTGEVGVGGGIIVGGRLLRGADGFSGEVGHMPVDPGGSRCGCGRSGCWETKVGL 310 Query: 272 AAIEQRVLNLLKQGYQSR-VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAI 330 AA+ + G + VP + + I + GD L + VGR LG +I + Sbjct: 311 AALVRMATPDQAYGMGTTPVPDPEERVAEIARGLAGGDPLMLAAVAEVGRWLGLGGSILV 370 Query: 331 NLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA-IGAFAL 389 NLFNP+ IV+ G + LLP ++ + + V S+L +A +GA + Sbjct: 371 NLFNPRVIVVGGYFATLARWLLPFAQAELEDLVVAGPAARCRFVASDLGFGAASLGAANV 430 Query: 390 VKRAMLNGIL 399 V +++ Sbjct: 431 VINQLIDDPT 440 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 179/393 (45%), Gaps = 7/393 (1%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + + + ++ N + + +GPI+R+ + + +L+PA+VT IT +L + + E Sbjct: 2 KKTDTEQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEHPA 61 Query: 68 QA---STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQ 122 +T GR + I FH +G++L ++ + L + +V E L R ++ Sbjct: 62 TTEKTNTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTRALSE 121 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + L A+ +A+ +F S + A+ + + G+V+ +G+I + P + V L L Sbjct: 122 EGLFDAIASAVRRFNASVPA-HKRPKALGIAVQGVVNGLNGEIIWSPALAVRKVPLKHEL 180 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E+R ++ + +D L +A + Q D ++ + G G G++ NG +++G +G Sbjct: 181 EQRIQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGAA 240 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 E GH + P G +C CG GC+E + A+ + L + + + + +++ + Sbjct: 241 AEFGHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALFPLSWDNSLHPTEDSMQVLVN 300 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 A ++ + GR LG I+ I L + +KI+I+G + A ++ + + + Sbjct: 301 KAESDSKELRDLFQRAGRVLGHGISNLIALLSLEKIIISGPGSRAYHLMEAGLMTNLEDS 360 Query: 363 ALKAFRTNLPVVRSELDHRSAI-GAFALVKRAM 394 + + + D I G L A+ Sbjct: 361 LVSDLIAETTIEHAAWDEDMTIKGIVVLALEAI 393 >UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318_DEIGD Length = 400 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 162/400 (40%), Gaps = 21/400 (5%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 A+ G+ +KQLN +AV LI + ISR ++A ++QL +V + ++L+++G + E Sbjct: 7 HARAGDQGFLKQLNRSAVLELIRREPGISRAELAARTQLTKVTVGAMVQELLDQGWLVEG 66 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 Q + GR ++ R +G +G + L+ + L + +P T + Sbjct: 67 SLQQGSLGRPGRALHLNERRHVLLGAEVGVQGLRVVACTLTGRALGQRAILVPSTTPEAT 126 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 L I + + + RE++ + V +PG V + + P++ + + L+ Sbjct: 127 AQHLATLIMEVLTYPEVAGREVLGLGVAVPGPVALHDPTLLFAPNLGWRDVPFLTVLKPF 186 Query: 186 F-KV--TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGR---IFIGRN 239 + + ++ ++ A E YF E + + G G+G++ + G Sbjct: 187 LPDLPGPWLLENEAKAAAFGEVYFSGGDKPELLAYLSLGTGIGSGLMVGAPVPYLLRGAQ 246 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGH ++ G CHCGN GC ET+ + AI + + + Sbjct: 247 GLAGEIGHSVLQSGGLYCHCGNRGCAETLVSGWAIRAALDIPPGVPLEPALQP------- 299 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 D+ + G LG + + NP IV+ G +T + LL + Sbjct: 300 -----RMQDADVQVTLRRAGEALGMLLTNLHHTLNPSDIVLGGSLTRLGEPLLGPALAFF 354 Query: 360 NTQALKAFRTNLPV---VRSELDHRSAIGAFALVKRAMLN 396 + + +R++ A GA A V ++ + Sbjct: 355 REHQHDLYTRTASISIHIRTDSTFLPARGAAAQVLASVFH 394 >UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=Clostridia RepID=A5CYL2_PELTS Length = 337 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 94/326 (28%), Positives = 164/326 (50%), Gaps = 8/326 (2%) Query: 84 RNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHALLNAIAQFIDSYQR 142 +F+ IGV LG L +VL+E P R Q + +++++ Q ++ Sbjct: 2 NSFYVIGVDLGGTKIYTALAADDGRVLSEIKLPTEAGRGLQGVIDRIVHSVEQVRENVAV 61 Query: 143 KLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALA 202 ++++A+++ PG +D G IH+ P+++ N + + LEER + + +D AL Sbjct: 62 PPQKVLALALGAPGPLDTAGGVIHFAPNLRWNNVPIRQILEERLSLPVLLDNDANLAALG 121 Query: 203 EHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNF 262 EH FGA + C + + + V G G G+I +G+++ G + GEIGH+ V P G C CGN Sbjct: 122 EHVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAGEIGHMTVLPDGPVCSCGNR 181 Query: 263 GCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVIE 316 GCLE +A+ AI + L+ G ++ + AA GD A+ +I+ Sbjct: 182 GCLEAMASGTAIARAAAELVASGGGRKILAAAGGDPGRINAAAVAAAAAGGDPEAAAIID 241 Query: 317 YVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRS 376 +LG +A +NL NP +V+ G + E + + + + +AL+A R+ +V + Sbjct: 242 RAAGYLGIGVASILNLLNPAMVVLGGGVMEIGEPVWKGVRREVQARALQAARSRARLVPA 301 Query: 377 ELDHRSAI-GAFALVKRAMLNGILLQ 401 EL R+ + GA AL + + +G L Sbjct: 302 ELGGRAGVMGAIALALQEIADGNCLP 327 >UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LTZ1_ACIC1 Length = 436 Score = 327 bits (840), Expect = 5e-88, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 171/403 (42%), Gaps = 16/403 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + D+++Q N + + R + G +SR + L +++ + +L L+ E Sbjct: 1 MPGVATQDVIRQRNLSVLLRRLHVDGALSRADLTAAMGLNRSTIKALVEELAAMNLVTET 60 Query: 66 DQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQ 122 + GR + + + + +G T+ F L +LA YPL P + Sbjct: 61 IPGTAQRAGRPSHVVAVRCDTAYVLAANVGVDTVTVAAFGLGGHILARRDYPLGGPGASA 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRE-LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 + L A + +R L+ I V +PG+V + G++ + P++ N Sbjct: 121 DAVIARLAAECAAIRSALERSPDRRLVGIGVAIPGMVHAEDGRVEFAPNLMWRNVPFAAP 180 Query: 182 LEERFKV--TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 L V +G+D ALAE GA + + + G G GII +GR+ +GR+ Sbjct: 181 LSAALDVDVPIRIGNDGDLGALAEQVRGAGRGVAHLVYIAGEVGIGGGIIVDGRLVLGRH 240 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGH+ V P G C CG GCLET AI + G Q+ Sbjct: 241 GFAGEIGHVMVHPDGRPCRCGGRGCLETEVGEEAILTACGRDPRAGRQAT--------HE 292 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + +AA +GD A + + ++ LG+ + IN+F+P+ ++I G ++ + P I + Sbjct: 293 VFEAARRGDRRAQDGLRHIAVWLGRGLGSIINVFDPEVVIIGGPLSSLLPLAEPVIREEL 352 Query: 360 NTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGILLQ 401 L R ++ + L S++ GA L +L + Sbjct: 353 AASTLP-HRRSVQIRPPGLGEDSSLFGAAELAFERLLEDPSMM 394 >UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WTI5_RENSM Length = 403 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 169/384 (44%), Gaps = 22/384 (5%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 +A+ LI SR +A + LAP+++T+ +LIE GLI E TGGRR + Sbjct: 30 SAILSLIASNPASSRADLARKLNLAPSTITQRINELIEAGLIAESGAGGHTGGRRPTLLS 89 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDS 139 + LG A + ++S +L + + + + A+ I+ Sbjct: 90 LVADAGCILAADLGAAHAWVGRLNMSCALLDSSLISIDISAGPEAVLPIISEAMRSLIED 149 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRS 198 L + + LPG VD G + + + + + L F V +D Sbjct: 150 ---DTPPLRGVGLALPGPVDFTRGMVDSPSRMRGWHQYPVRDWLSREFDTAASVDNDANM 206 Query: 199 LALAEHYFGASQDCE-----DSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +AL E+ Q+ + D++ ++ G G+I G+++ G +G G+I H+QV Sbjct: 207 MALGEYSLRQRQNPDTKNRTDTLFLKAGAAIGCGLILQGQLYRGASGTSGDIAHVQVSAA 266 Query: 254 GE-RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLAS 312 GE C CG+ GCLET+A+ AI +++ ++ + + + A GD+ + Sbjct: 267 GELPCACGHRGCLETVASGTAIVSQLIEA---------GVEVKDLADVIRFALNGDTQTT 317 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 + GR LG+T++ +N NP +V+ G +++ + + AI S + NL Sbjct: 318 TRLRAAGRLLGQTLSTVVNFINPSLVVLGGGLSQV-EPYVAAIRSQLYAGCHPLAAKNLL 376 Query: 373 VVRSELDHRSA-IGAFALVKRAML 395 + S+ ++ +GA RA+L Sbjct: 377 IEPSQAGSQAGLLGAGQQCLRAVL 400 >UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=Micrococcineae RepID=D1BAZ9_SANKS Length = 420 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 107/391 (27%), Positives = 183/391 (46%), Gaps = 15/391 (3%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 A G+ +++ N A + I ++G ++++++ + L+PA+++ I ++L+ G++ Sbjct: 1 MAISGSQSSLREANRALIVDTIKKFGGLTQVELVAATGLSPATISTIVKELLGGGIVDT- 59 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQT 124 Q + GRRA + R GV+ G + L D V+AE+ PLP + T Sbjct: 60 -QSTTRSGRRAQMVTLARRVGLVAGVQFGHRHLKVALGDFGRTVVAEQTMPLPVDHRSDT 118 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALE 183 + + ++ + EL+ I + +P VD +G+I + + L + L Sbjct: 119 GLDRAALLVVELLERVGAPIDELLTIGLTVPAPVDVSTGEISVHGIMRGWDGQQLGQVLS 178 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 ER V +D + ALAEH GA + +D + VR+ TGAGI+ G + G G G Sbjct: 179 ERLARPVVVDNDANAAALAEHELGAGRGYQDVVFVRMSYSTGAGIMLGGHLHRGFAGTAG 238 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 EIGH+QV+P G+ C CGN GCL+T+ ++ A+ + D T++ + Sbjct: 239 EIGHVQVDPRGDICRCGNRGCLDTVVSSTALLDLLR----------GSHGDLTLRDLVSR 288 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 A GD V+ G +G +A NPQ +V+ GE+ A +V++ + + Sbjct: 289 ALAGDLGCRRVLADAGERIGGVVATLAGTLNPQLVVVGGELAAAGEVIVEPLRQAVLRHV 348 Query: 364 LKAFRTNLPVVRSELDHRS-AIGAFALVKRA 393 L VV EL ++ GA L RA Sbjct: 349 APNTVAPLEVVPGELGEQAEVTGALLLALRA 379 >UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIY1_9ACTO Length = 423 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 9/382 (2%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 + L+ +SR+++AE S L A++T + R+LI+ GL+ EV ++ G+ + Sbjct: 33 GRMLDLLRTRSTLSRVELAELSGLTQATITHVVRRLIDGGLVLEVGREQQGRGQPRRLLE 92 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHALLNAIAQFIDS 139 ++A+GV++ R TI + D + + +A + AL + I + S Sbjct: 93 LNADAWYAVGVQVDRTTTTIVVIDFAGRRVATAGFRGTGTSGPDAAVSALADHIDDLLHS 152 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYM-PHIQVENWGLVEALEERFKVTCFVGHDIRS 198 +I + ++ G D + G + P + L L R + + +D + Sbjct: 153 TAVPRERVIGVGLVTHGPQDRERGMLLMAHPTPDWLQYPLTSTLSNRLGLPVLLENDATA 212 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCH 258 A E + G + L+ + G G GI++NG + GR N EIGH+ + C Sbjct: 213 AATGEQWSGTVP-TDTFGLIYLGSGLGGGIVANGNAYRGRASNAVEIGHVGLMGASAPCV 271 Query: 259 CGNFGCLETIAANAAIEQRVLN----LLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 CGN GC E A + +VL + G ++ + + +A D A+ + Sbjct: 272 CGNCGCAEAEAGPHTVVAQVLAHPDLAGRLGIKAHEEDTLADFERVARAWQADDPDATAI 331 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGE-ITEADKVLLPAIESCINTQALKAFRTNLPV 373 ++ R +G+ +NLF+ +V+AG + A + +E+ + AL + V Sbjct: 332 LQRSARWIGRAAVTMVNLFDLDTVVLAGPALISAGPLYQHFVEAELTRHALSRALSRPRV 391 Query: 374 VRSE-LDHRSAIGAFALVKRAM 394 + S +D +AIG V R++ Sbjct: 392 LLSANVDTAAAIGGALHVLRSI 413 >UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus RepID=C8ZX67_ENTGA Length = 388 Score = 326 bits (837), Expect = 9e-88, Method: Composition-based stats. Identities = 99/394 (25%), Positives = 179/394 (45%), Gaps = 19/394 (4%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N +++ N AAV + I ISR +++ + L ASV++I ++LIE +KEV S Sbjct: 4 NKMGIREQNEAAVLKTIIDNEHISRAEVSNLTNLNKASVSQIMKKLIETDFVKEVGIGDS 63 Query: 71 T--GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHA 128 T GGR+ I + ++ AI +G + L ++ + +A T+ + Sbjct: 64 TSIGGRKPIQLQFNHQSSLAITFDIGYNYVNGMLSYINGQRIAILEKQDILITKDNVFTT 123 Query: 129 LLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKV 188 + + +A+F L+ I + + G+V+ ++ I + P+ +E+ LV L +++ Sbjct: 124 IDSIMAEFTPKMPPTTHGLVGICLAIHGIVNQEN--ITFTPYYDLEHIDLVSPLSQKYHT 181 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 ++ ++ AL E+ F S D + + V +H G G GII NGR+ G +G GE+GH Sbjct: 182 AVYIENEANLTALGEYCF--SSDSTNLLSVSIHSGIGVGIIVNGRLQTGTHGTAGEVGHS 239 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 + P G C CGN GCLE A+N + + K+ + KA G+ Sbjct: 240 TLFPHGNLCPCGNRGCLEQYASNKVLFDTYSHYTKK--------ELVNSDIFAKAIRSGE 291 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A E+ + L + I F+P+++ I + +P + + + F Sbjct: 292 KSALELAQQNVEFLSIGLNNVITFFDPEEVYINSSVYRK----IPQLTKDLQQKLTSQFT 347 Query: 369 TNLPVVRSELDHRSAI-GAFALVKRAMLNGILLQ 401 N + S L ++ + G L+ + LN L+ Sbjct: 348 QNTKIKNSRLGEQAPLFGGNVLIAKNFLNIEDLR 381 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 326 bits (837), Expect = 9e-88, Method: Composition-based stats. Identities = 93/365 (25%), Positives = 177/365 (48%), Gaps = 9/365 (2%) Query: 39 AEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDA 98 A + + + + L++ G++ EV Q S+GGRRA ++ +GV + Sbjct: 2 ARRLAYSKSKANAMVAALLDEGVLDEVGLQESSGGRRAETLRLSESLGAVLGVDMDATSM 61 Query: 99 TITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGL 157 + L VLA + + R + L + + + +LIAI + +PG Sbjct: 62 QLALMRPDMAVLARQCETIDVRRGPGVILAQLCGLMRELMARCGLSSSQLIAIGMGVPGP 121 Query: 158 VDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSI 216 VD SG++ P + + + + + L E F FV +D+ +AL + + + D + Sbjct: 122 VDFASGQLVNPPLMPDWDGFSIRDYLREAFVAPVFVDNDVNLMALGKLWR-LQRTLSDFL 180 Query: 217 LVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ 276 +++V G G GI+ +G+++ G NG+ G++GHI V+ G RCHCGN GC+E +AA A+ + Sbjct: 181 VIKVGTGIGCGIVCHGQVYRGTNGSAGDVGHICVDQAGPRCHCGNQGCVEAMAAAPALVR 240 Query: 277 RVLNLLKQGYQSRVPL-----DDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAIN 331 + + ++G S + I+ + +A+ GD A+ +I+ G +G+ +A +N Sbjct: 241 AAIEVAQKGESSWLAERLQASGSLGIEDLAQASRVGDVAANILIQRAGSLVGQMLASVVN 300 Query: 332 LFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALV 390 FNP + I G + + + L ++ + ++L +L + + L +A+ GA L Sbjct: 301 FFNPSHVFIGGLVADMGPLFLASVRQSVYHRSLALSTRHLEIQCAPLADDAALVGAGVLA 360 Query: 391 KRAML 395 + L Sbjct: 361 MQESL 365 >UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O82844_TETHA Length = 386 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 90/378 (23%), Positives = 175/378 (46%), Gaps = 20/378 (5%) Query: 22 AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST--GGRRAISI 79 + + I Y ISR ++ + + L +SV+ IT+ L+++ +I E ST GGRR I + Sbjct: 13 LILKNIIDYQEISRAKLTKITNLTKSSVSDITKTLLDKDIIYESKVGNSTNSGGRRPIYL 72 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDS 139 + IG+ +GR+ L ++ ++ E+ Y + + L I Q Sbjct: 73 KFNENSALVIGIEIGRNYIKGGLSYINGSLIREKSYTQITINRYNIIDTLSQIIQQLCSD 132 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSL 199 + +I + V + G + KI ++P+ ++ L E L + F+ ++ + Sbjct: 133 LPKSSYGIIGVGVAIHGSI--YKNKITFVPYSDMDEIELQEKLSSHTHLPVFLINEANAS 190 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 AL E+ F + + E I + + G GAGII G ++ G+NGN GEIGH + P G C C Sbjct: 191 ALGEYTF--TSNSESLISISIQDGIGAGIIEKGILYSGKNGNAGEIGHTTLYPDGRLCPC 248 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 GN GCLE A+ + + + L + ++ C + + + D ++++ Sbjct: 249 GNHGCLEQYASTTILYKEISKLKE--------VEYCDLHQVINYWHN-DEEVIQLLKNNA 299 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 + + + +++++P+ +VI E+ L+ IE + + N+ + + L+ Sbjct: 300 KLISIGVNNIVSMYDPETVVINNELYREIPDLINVIEKHLTRR----NNRNVFIKNTSLE 355 Query: 380 HRSAI-GAFALVKRAMLN 396 ++ + G +LV R L Sbjct: 356 DKTTLYGCLSLVIRQFLK 373 >UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGR1_9MICO Length = 421 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 184/396 (46%), Gaps = 9/396 (2%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ-QA 69 + ++ N + R + +G SR +A ++ L+ A+ + + L ERGL++E + +A Sbjct: 23 DQAQMRAANMGLILRQLQLHGGRSRAGLATETGLSKATTSSLIADLAERGLVREGEIHRA 82 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL--PERTQQTLEH 127 + GR +++ + R +G+ + +T DL+ V+ E P+ PE + + Sbjct: 83 GSVGRPGLTVNLDGRRVAGLGLEISIDYVAVTAVDLTGNVIRESITPMDVPELAVEVVLD 142 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + + ++S + ++ +V PG++D D+G + + P++ + L L ER Sbjct: 143 RVAGIAQRMLESLRSAGHIVVGFTVAPPGVIDYDAGIVRFAPNLGWRSVALAAGLSERIG 202 Query: 188 --VT-CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + +D + A+AE+ A + +D + + G GAGII+ GR+ G +G GE Sbjct: 203 PECPEIHLENDAKLAAVAEYGAYADSEVQDLVYLSGEVGVGAGIIAEGRLVRGWSGFSGE 262 Query: 245 IGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAA 304 +GH+ + P C CG GC E + + + + SR +DD ++ + + A Sbjct: 263 VGHLALGPSELECSCGRRGCWELVVGLHHFLRLAAPVGDVVHDSRRSMDD-RLEILRERA 321 Query: 305 NKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL 364 GD E + + R L + +++ +++ NP++IV+ G + LL ++S ++ + + Sbjct: 322 ASGDERTLEALAAIARDLIRGLSVLVDVLNPRRIVLGGYFAPFGEQLLAPVKSALDERRM 381 Query: 365 KAFRTNLPVVRSELD-HRSAIGAFALVKRAMLNGIL 399 + + V S L ++ G A+ Sbjct: 382 -DAGSEVVVAVSALGLSAASRGGALAALEAVFEDPT 416 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 174/397 (43%), Gaps = 11/397 (2%) Query: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 G A+ GN +K N V +++ YGP+SR +IA ++ L+ + T I L GLI E Sbjct: 3 GTARGGNAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLIAE 62 Query: 65 VDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQ 123 +++ GRR I + G+ +GR L DLS++++A E Sbjct: 63 EKGESAGAGRRPGLIRLSPASPLVCGITIGRRRCEAVLADLSAQIVARESACYDNALDGP 122 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEAL 182 L L ++ + R + I V G +D +G + P+ + + + L Sbjct: 123 RLSELLARLCSRLLKRVDRP---VAGIGVAALGPLDARAGTLLNPPNFYGIGHLPVRAIL 179 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + + C + HD+ + ALAE +GA Q E +++ G GAG++ +G +F G G Sbjct: 180 SDASGLPCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGVAGLS 239 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GE+GH+ + G +C CG GCLE A+ A+ + + Sbjct: 240 GELGHVSINFEGPQCACGGRGCLECYASERALLAYAREYAARTGTAA----PENWSDAIS 295 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 AA GD+ + +E ++ ++ A+ L + ++ + + +L +E +N + Sbjct: 296 AAGTGDAACAAALERYCGYVAAALSNALCLIDVHRVFVG-YDGDGGGLLERLLEQRVNER 354 Query: 363 ALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGI 398 A + V RS +++ GA AL R + +G Sbjct: 355 LHIAGCRRITVRRSSFGSDASVYGAAALAARCVFDGA 391 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 149/307 (48%), Gaps = 12/307 (3%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLR 145 +AIG+ +G I L +V + P + + + + AI + + Sbjct: 3 YAIGIDIGGTKTAIGLIGTDGEVRTKVSLPTDQTVGPEVMVDRMAAAIQDILTAQGIAES 62 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 EL+ I V PG ++ GKI P++ N+ +V++L+ F + + +D + ALAE Sbjct: 63 ELLGIGVGAPGPLNTKEGKIAEPPNLRGWWNFPIVDSLKRYFSLPIRLENDATAAALAEK 122 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + GA++D E + + + G GAGI S+G++ G +GN G++GHI V+P C CG GC Sbjct: 123 WLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGNAGDVGHIVVDPSVGTCVCGQKGC 182 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 E +A+ A+ ++ LL + + + K A G + E++ V ++G Sbjct: 183 WEFVASGTAVARQASELLGR---------EVSSKEAFDLAAAGQPVIQELVAKVFENIGV 233 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA- 383 IN F+P+K+VI G +++ L A+ ++ AL P+V + L + Sbjct: 234 GCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVSKYALNPSGRQTPIVPAALHQDAGL 293 Query: 384 IGAFALV 390 IGA AL+ Sbjct: 294 IGAAALI 300 >UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY82_9CLOT Length = 400 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 171/396 (43%), Gaps = 17/396 (4%) Query: 13 DLVKQL-NSAA-VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 ++++L N +I + G I++ I + + ++ ++ + L ++ LI E S Sbjct: 3 KILRELSNRELETLDIIQKKGLITKKSIQAITGMTLTTLNRVMKSLEDKKLISEAGISKS 62 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHAL 129 TGGR+A+ +AIGV + R I + +L +L ++ + + + + + + Sbjct: 63 TGGRKAVKYDVAQSGIYAIGVDMSRTYVRIVILNLKMTILEKKEFFMDDSFSPEKTVEKI 122 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ---VENWGLVEALEERF 186 N I + + E++ I + G +D + G + + N + + E+R Sbjct: 123 GNIIDEGLLKLSIDKSEVLGIGIGTVGPLDREKGVMINPKNFFNELWSNVPIRDMFEKRT 182 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + CF+ + + LAE+ FG +D ++ + V G + +I+NG I + Sbjct: 183 SLPCFIDNGTNAAVLAEYLFGKGKDFKNIVYVHCGIGIRSAVINNGIIIRTMRDSEDAFA 242 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK-QGYQSRVPLDDCTIKTICKAAN 305 H+ V+ GE C CGN GCL++ ++ AI + ++LK + + + K I + Sbjct: 243 HMVVDFNGEECSCGNKGCLDSYSSINAIVKSFNSILKNNNNDTNEEIKEEDYKKILELTV 302 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT-QAL 364 + A E+I LG +A + + NPQ +++ G + + K+ N L Sbjct: 303 NNNKSAVEIINKGAEILGVGLANMVRILNPQLVILYGPLIKNYKLYYNKCIDAFNKSNCL 362 Query: 365 KAFRTNLPVVRSEL----DHRSAIGAFALVKRAMLN 396 V+ S+ + A+G+ +V L Sbjct: 363 NN-----EVIFSDGGEFKGNAIAVGSGLIVIENYLK 393 >UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID=C5C1Z1_BEUC1 Length = 403 Score = 324 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 173/388 (44%), Gaps = 16/388 (4%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 + +L+ +R + ++ + +++ L+ GL+ V +ASTGGR + + Sbjct: 26 LLQLLRDGRARTRADLVAETGQSRSTIATRVDALLATGLVASVGSRASTGGRPPTAFAFD 85 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQTLEHALLNAIAQFIDSYQ 141 + +GV LG + + DL+ +LAE P+ + + + + +D Sbjct: 86 PTSRVVLGVDLGAAHGRLAVTDLAGSILAEHAEPVRISDAPEKVLGWVARTGHELLDRAG 145 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLA 200 R +L + + LPG V+ +G+ P + + L F V +D+ +A Sbjct: 146 RPSTDLAGLGLGLPGPVEHSTGRPVDPPIMPGWHGVDVPGILGAHFAAPILVDNDVNLMA 205 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG--ERCH 258 L EH G D +D + V+V G GAGII++G + G G G++GH+ V P G C Sbjct: 206 LGEHAMGF-PDVDDLLFVKVATGIGAGIIADGELRRGAQGAAGDLGHMAV-PGGEPRLCT 263 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYV 318 CGN GC+E +A+ AI ++ +D T + GD A+ + Sbjct: 264 CGNTGCVEALASGNAIATKLREA---------GIDATTSDDVVALVRAGDPTATATLRQA 314 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 GR LG +A ++L NP +VI G ++ A + LL I + ++L +L +V + Sbjct: 315 GRELGAVLAGTVSLLNPSVVVIGGSLSAAGEQLLAGIREVVYARSLPLATQHLQIVGTRT 374 Query: 379 DHRSA-IGAFALVKRAMLNGILLQHLLE 405 ++A +GA L L+ + L Sbjct: 375 ARQAAVLGASVLASDFALSTARIDALTA 402 >UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces RepID=C9ZFY3_STRSW Length = 406 Score = 324 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 94/404 (23%), Positives = 164/404 (40%), Gaps = 20/404 (4%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGL 61 G+ N +++ N A V ++ GP+SR +A + L A+V+ + +LI GL Sbjct: 11 GGSGRRLPDNQQGMRRRNLARVLHAVNAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGL 70 Query: 62 IKEVDQQ-ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP--LP 118 ++E+ + GR ++ R IG +G + DL +V A Sbjct: 71 LEELGPERPGRVGRPGSALALSGRGPAGIGAEIGVDHLAVCAVDLRGEVRARAVRQGTNR 130 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGL 178 R+ + + L + Q + + + ++V +PGLV D+ + P++ + L Sbjct: 131 GRSPEPVVDDLTRLVRQVVAEAESEGLWPAGLAVAVPGLVASDARTVVRAPNLDWHDTDL 190 Query: 179 VEALEERFKVT--CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 L V ++ LAE + G D + V G G ++ +GR+ Sbjct: 191 GALLPGGLPGGLPVTVDNEANFGGLAELWLGDG-TPPDFLHVSAEIGIGGAVVVDGRLLR 249 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCT 296 G G GE+GH+ V P G C CG GCLE A A+ + + + Sbjct: 250 GTRGFAGELGHVPVRPEGPACACGGRGCLEQYAGEEAVLRAA----------GLEPAEHR 299 Query: 297 IKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIE 356 ++ + + A GD + G LG + A+NL +P+ +V+ G + LLP++E Sbjct: 300 VEFLAERAAAGDKEVHRALRGAGTALGIALTGAVNLLDPETVVLGGALAALAPWLLPSLE 359 Query: 357 SCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGIL 399 + + V S L +GA V RA+L+ Sbjct: 360 RELARRT---AGPACAVTVSRLGSDGPLLGAAHSVVRAVLDDPA 400 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 176/388 (45%), Gaps = 14/388 (3%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 K N +R + + S+++I++ ++ +VTKI + + LI E Sbjct: 6 QKREKLRNENRTFRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGTNNGK 65 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLN 131 GR+AI + +IG+++ + ++ L +L K+L + + ++N Sbjct: 66 LGRKAIKYQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEFINSENFVFLVIN 125 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + +F+ + K + I ++LPG+V+P++ I + + N + E +EE F + F Sbjct: 126 ELKKFLWEFD-KKEFIKGIGIVLPGIVNPENNMIKLGGNFSLLNQDMKE-IEEEFGLPIF 183 Query: 192 VGHDIRSLALAEHYFGAS--QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 + ++ + A+ E+ S Q ++ + V + G G+GII +++ G+ GEIGHI Sbjct: 184 LENEANAGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSGEIGHIP 243 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + P G++C CG+ GCLE +N A+ + + + + I + G+ Sbjct: 244 IIPNGDKCACGSEGCLEQYCSNLALMKEFEKEFQ--------CEIKEYEDIFQEKFIGNE 295 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 +++E L I A+ + N KI+I G+I++ + P ++ I + + + Sbjct: 296 KGKKILERYTWILALGIKTALMMLNSDKIIIGGKISDYKEYFEPMLKEIIFSNNIFSNDA 355 Query: 370 NLPVVRSELDHRS-AIGAFALVKRAMLN 396 ++ + S L + +GA + Sbjct: 356 DI-LEFSSLSDNANLLGAAFIPLGEFYK 382 >UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDS2_CLOTS Length = 311 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 140/309 (45%), Gaps = 7/309 (2%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLREL 147 IGV +G + + L D + K++A P P+R + + + I + ++ Sbjct: 3 IGVDVGGTNIAVGLVDENGKIIATGSRPAEPKRGYAAIAKDIAEISLELIKRCGLDISDV 62 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 ++ + +PG+ D + G + ++ LV+ + + + + +D ALAE FG Sbjct: 63 ESMGIGVPGVADNEKGIVLRAVNLYWTKVPLVKEIHKYIDIPINMDNDANVAALAEGIFG 122 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A + S+ + + G G+G I NG++F G + E+GHI + G C+CG GC ET Sbjct: 123 AGKGTNSSVTITLGTGVGSGFILNGKVFNGAHHFAPELGHIVLGDNGVMCNCGKIGCFET 182 Query: 268 IAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVIEYVGRH 321 A+ A+ + + + S + ++ T K + AA + D A + ++ Sbjct: 183 YASATALIREGKKAVMKDSNSLILKLAGGEIESITAKNVIDAAKQFDEAAMMIFNDYVKY 242 Query: 322 LGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHR 381 L I IN+ +P+ I+I G + A LL ++ ++ L + ++EL + Sbjct: 243 LAMGIVNIINILDPEVIIIGGGVANAGDFLLKPLKEEVSKNILFKDLPYADIKKAELGND 302 Query: 382 SAIGAFALV 390 + I +++ Sbjct: 303 AGIIGASIL 311 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 323 bits (830), Expect = 6e-87, Method: Composition-based stats. Identities = 93/381 (24%), Positives = 164/381 (43%), Gaps = 15/381 (3%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ----QASTG 72 + + AV RL+ + G +SR IA L+ ++V+ I L+ L+ E+D Sbjct: 11 ERSRLAVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVELDAKLAPAGGGA 70 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLN 131 GR +++ + AIGV G + + +++ V + LP + Sbjct: 71 GRPGAAVMLNPASGEAIGVDFGYRHVHVIIANVAHAVRIAKSVRLPVGYDPAQGFDVASD 130 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 I ID ++ + V +PG D G + + L R + Sbjct: 131 LIRTAIDEAGTDPSRILGVGVSVPGPFDTKRGVPSSGMPSRWAGIPVATELAARLNLPVL 190 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 D R ALAE +GA++ C++ + +++H G G +SNG++ G NG GEIGH+ V+ Sbjct: 191 ADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGINGGAGEIGHLVVD 250 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 G C CGN GCLET + + + D T++ + A +GD Sbjct: 251 ATGPLCRCGNRGCLETFVGLPVVMRALEPAYG---------DRLTLRNVITMAWQGDRGC 301 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + G G+ + + N+ NPQ ++I G ++ A ++L+ + T +L + Sbjct: 302 IRALSDAGTMAGRAVGMLGNILNPQSVIIGGALSAAGELLMGPLREAAATASLPLAGDAM 361 Query: 372 PVVRSELDHRS-AIGAFALVK 391 + L ++ A+GA A+V Sbjct: 362 TLQVGSLGPQACALGAVAMVL 382 >UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E0R0_DICTD Length = 396 Score = 323 bits (829), Expect = 8e-87, Method: Composition-based stats. Identities = 80/417 (19%), Positives = 168/417 (40%), Gaps = 41/417 (9%) Query: 1 MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERG 60 M + G +++N + + ISR +IA++ L+ ++VT++ LI+ G Sbjct: 1 MVFIRTGRGGRASQQREVNKTIILNAFLRCRNISRTEIAKRFNLSKSTVTRLVNNLIDEG 60 Query: 61 LIKEVDQQ-ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE 119 +I E++ GR+AI + +A+ +++G ++ D + + + + P Sbjct: 61 MIIEIEPSSEKKIGRKAIVLGLNPEYRNALAIKVGVTYTYLSKIDFAMNIKEIKSFLTP- 119 Query: 120 RTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV 179 + Q L A + L + A+ + +PG+VD + P++ +N L Sbjct: 120 KNPQDFLDELEKATQML---FPEGLEKTHAVGIGIPGIVDNTFKNVVVAPNLNWKNLPLG 176 Query: 180 EALEER------FKVTCFVGHDIRSLALAEHYFGASQDCEDS--ILVRVHRGTGAGIISN 231 + + ER ++ + ++ +AE G + D + V V G G G+I + Sbjct: 177 DMIAERMRRAFSVEIPVKMDNEANMAVVAEGMLGTKIEYNDLNIVYVYVGEGIGTGLILD 236 Query: 232 GRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAA-IEQRVLNLLKQGYQSRV 290 G+++ GR GE GH+ + G +C CGN GC E A+ I ++ L++ Sbjct: 237 GKLYRGRYNTAGEFGHMTIMKDGIKCKCGNLGCWERYASLGGDIAEKAGFDLEK------ 290 Query: 291 PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE---- 346 + A D A ++ L + IN NP I++ G + + Sbjct: 291 -----------ETAEIADEKA---LKKYVDELTVGLINIINGLNPDVIILGGPLIKKDTK 336 Query: 347 -ADKVLLPAIESCINTQALKAFRTNLPVVRSELDH--RSAIGAFALVKRAMLNGILL 400 + + ++ + +++ + + + + +GA + G +L Sbjct: 337 DVWEFIRQEVKKIVEEKSITSDAGKVRIELTSFLDYPAELVGAGIWAFWDIFEGPVL 393 >UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP32_9FIRM Length = 406 Score = 323 bits (828), Expect = 9e-87, Method: Composition-based stats. Identities = 108/413 (26%), Positives = 186/413 (45%), Gaps = 19/413 (4%) Query: 1 MTPGGQAQIG-NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIER 59 M G A+ G N L+KQ N + +LI SRI++++++ LA +VT I + +ER Sbjct: 1 MGAGKMAKSGVNNTLLKQRNRGLILKLIATGQCSSRIELSQKTGLAKMTVTYIVNEFLER 60 Query: 60 GLIKEVDQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP 118 G+ +E + G GR + + + IGV L R ++ L D+ K+L + +P+ Sbjct: 61 GIFEERQKVQVEGKGRNPVQLCISDKAPKLIGVHLYREICSVILCDIQLKLLKKICFPVT 120 Query: 119 ERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWG 177 E T L + +A+ Q +++ + I I I P VD + GKI P+ + + Sbjct: 121 EETAPQLMEHIFHALDQIMETLGDEKIYGIGIGAIGP--VDKNRGKILAPPNFYGLHDLE 178 Query: 178 LVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIG 237 + +EE + F + A+ E Y+GA DCED I V + G G+G++ NG ++ Sbjct: 179 IAREIEEHCHMPVFFDGESNCAAIMEKYYGAGTDCEDFIYVDLANGVGSGLVVNGELYAN 238 Query: 238 RNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTI 297 +G + E+GH ++ GE C CGN GCLE ++ +E ++ + R + Sbjct: 239 TSGMICELGHTSIDWQGEPCSCGNRGCLERYISSNVLESQLQKVTGDMKDFRGFCQEMD- 297 Query: 298 KTICKAANKGD--------SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 +A +G+ V + L + +N NPQKI+I E Sbjct: 298 ----EAIKEGEGNTFTKRQQDMDRVFTEMTEKLSCALVGFVNSLNPQKIIIGHEGYWIPD 353 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGILLQ 401 L IE +N + ++ + VV+S + + G + A+ G Sbjct: 354 PYLCKIEKLVNERHIERKYRQIQVVKSGFKDEATVYGCTGALLTAVFEGSFFD 406 >UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DT25_9BACL Length = 389 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 19/396 (4%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + LV++LN + + ++ +SR + Q L+ ++++I +L+ G I+E+ Sbjct: 1 MPMKASPPLVRRLNERRIMNALREHKRLSRADLERQLNLSAPTISRIVEKLLRDGWIREL 60 Query: 66 DQQAS-TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQT 124 S T GR+ I + A+GV LGR I ++ +++ A Sbjct: 61 YPGESQTAGRKPILLDINPEGSGALGVELGRGCTRIVYTNMLAELRASRTISRSATGP-- 118 Query: 125 LEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ--VENWGLVEAL 182 + L + F+ LI + V PG P+ + P + + L Sbjct: 119 --NDLAEMVKSFLVEESLTEERLIGLGVAAPGACFPNRDMVVPAPDLGTEWSKSEAAQQL 176 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E V + +D + LAE +FG +Q + V G GAG+ G I+ G Sbjct: 177 ERELGVPVHLANDANAAVLAETWFGTAQHAQHVAFVLADVGLGAGLAVAGSIYEGAARKA 236 Query: 243 GEIGHIQVEPL-GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GE H V RC G+ GC+E+ A+ AI R+ + + TI+ + Sbjct: 237 GEFSHTIVNFESDVRCDDGHAGCVESQASGKAIFARLKAVREVHAHE-------TIEYVV 289 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 K A G + VI+ R+L IA + F+P+ +V+ G + A ++ + ++ Sbjct: 290 KRACSGVEPDASVIDRAFRYLAAGIANLVRAFDPEVVVLGGRMVLASQIAYERLRGYVHD 349 Query: 362 QALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLN 396 + + + + A+GA +LV + + + Sbjct: 350 CLRPEHK---LITCARFGLDAVAMGAASLVLQTVYD 382 >UniRef50_B0NGA7 Putative uncharacterized protein n=3 Tax=Clostridium RepID=B0NGA7_EUBSP Length = 390 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 80/407 (19%), Positives = 161/407 (39%), Gaps = 35/407 (8%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + + VK+LN V+R ++ S +I+ ++ +V KI +L E LI+EV Sbjct: 1 MKRSTSNQEVKKLNRNRVFRYVNSREETSMPEISAALSISGPTVLKIVNELKEEKLIREV 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 + STGGR+A +I +AIG+ + ++ I DLS K L E P + QT Sbjct: 61 GEFESTGGRKAKAIAAVRDVKYAIGLDITKNHVGIVYTDLSGKALKHERVRKPFKYTQTY 120 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 H + + +F++ + + ++ + + +P ++D I + + + E L Sbjct: 121 LHEVAAIVRRFVEESRIPKKRILGMGISVPAIIDVQRDYITNSHALGIYDVP-CEELTAC 179 Query: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGR------------ 233 C + +D + A+ E S+ C + + + + G II Sbjct: 180 MPYPCELLNDANAAAITES--NRSRTCSNLVYLFLSNTVGGAIIFGNETGIVRTAQEKDR 237 Query: 234 ----IFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR 289 ++ G N GE GH+ + P G+RC+CG GCL+ + + + Sbjct: 238 GSVYMYKGNNWRSGEFGHMVIHPEGKRCYCGKIGCLDAYCSALRLADQ------------ 285 Query: 290 VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADK 349 D ++ + G+ ++ + L + F+ + IV+ G + + + Sbjct: 286 ---TDGDLERFFREMEAGNQDLKKIWNEYLKDLAIAVDNLRMCFDCE-IVLGGYVGSSME 341 Query: 350 VLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLN 396 + + + + + + V SA+GA ++ Sbjct: 342 PYIQEFRNLVAEKDIFENSGDYVYVCQYQQEASALGAAIFQIEKFID 388 >UniRef50_D1NUM3 Transcriptional repressor in the Rok family protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUM3_9BIFI Length = 417 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 93/390 (23%), Positives = 166/390 (42%), Gaps = 6/390 (1%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 + + + N + V + +GP+SR IA+ +L PA+++KIT +LIE GL++E Sbjct: 25 SRATLSEHNRSRVLHHVYHHGPVSRATIAKALELTPAAISKITAKLIEAGLLEETGDMQG 84 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 G RR+I + FH V+ R I ++DL+ L+ + E TQ L Sbjct: 85 EGRRRSIGLRMNKSAFHVASVKFARTLVCIGVYDLAGNQLSMQEITAVEHTQ---IPETL 141 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVT 189 + + ++ K R +IAI + +PG G+ + +Q ++ V Sbjct: 142 DTVHSMLEKLLAKDRRIIAIGMAVPGPYLRAVGRTAMVSSMQEWRAVNFIDEFSHSLSVP 201 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 F+ D R+ L+ FG + G G G+I G G EIGH+ Sbjct: 202 VFIEQDARAGVLSYRLFGQGDADRHLAYYLLGEGVGLGVIDGDETINGELGAATEIGHVS 261 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 ++ G C CGN GCLE + +I + + + + + + + A G+S Sbjct: 262 IDVNGRSCECGNVGCLERYCSAVSIHEELNESGIVADSESMTHREAC-EALFRLAASGNS 320 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 A +++ +G ++G IN FNP +I++ ++ +LL AI ++ + L Sbjct: 321 QAVAMVQRIGTYVGYGAVTIINTFNPSRIIVGDIVSGGGDLLLSAIRRVVDARILPELNA 380 Query: 370 NLPVVRSELDHRS-AIGAFALVKRAMLNGI 398 +V ++ + GA + L Sbjct: 381 RTTIVLADASADASTKGAAGVAVEHFLANP 410 >UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3C7_9BACT Length = 322 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 155/316 (49%), Gaps = 3/316 (0%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE-HALLNAIAQFIDSYQRKLR 145 + IGV LG + + +L + + + H + IA I + + + Sbjct: 7 YIIGVDLGGTNLKAGIVGRDGNILYQFSIKTNAHAESQVISHQICELIAGIIKNVRIEKS 66 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 +++ I + PGL+D I + P++ + + + + + + F + C + +D + A E Sbjct: 67 DILGIGLGSPGLIDKKGETILFSPNLSKWRDIPIKKIISDTFGLPCILENDANAAAWGEK 126 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + GA +D +++ + G G GII + +++ G N GEIGH+ ++ G C+CGN+GC Sbjct: 127 WVGAGKDVSSLVMLTLGTGIGGGIILDNKLWRGINNTAGEIGHMSIQTDGPLCNCGNYGC 186 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIKTICKAANKGDSLASEVIEYVGRHLG 323 +E A+ + +R LL+ G S + ++ T K I +AA +GD + +IE GR+LG Sbjct: 187 IEVYASAPGMVRRFRELLESGKASLLKKDEEITAKRINEAAVQGDGASLSIIEETGRYLG 246 Query: 324 KTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA 383 I I++ NP +V++G + + ++L+ ++ I + LKA + ++ S+L + Sbjct: 247 IAIVNIIHILNPGAVVLSGGLIGSGELLMRPVKRTIEERVLKASYKDTKILFSQLGTDAG 306 Query: 384 IGAFALVKRAMLNGIL 399 I A L Sbjct: 307 IIGAAGCLLKELEISA 322 >UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7J1_9RHOB Length = 402 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 93/382 (24%), Positives = 163/382 (42%), Gaps = 6/382 (1%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + + + V++ N V + ++ ++R+ + + L+ A+VT IT L +RGLI EV Sbjct: 1 MIEKASREQVRRQNRFVVLSTLRRHTTLARVDLGRLTGLSLAAVTSITADLKDRGLIAEV 60 Query: 66 DQQAS----TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT 121 ++Q + T GR + H I V+L ++ L D + AE + + Sbjct: 61 EEQPNPDANTRGRPRTYLRLRDDVAHVITVKLSVDRVSLALVDYTGHQHAEAKFMVESSD 120 Query: 122 --QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLV 179 L I + + + R ++ I+V G+V +G I + P I L Sbjct: 121 MGGDAFIALLAREIKALLKTEPLRARSVMEITVATQGIVGKHNGSIIWSPTIAERQVELT 180 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 L + +TC + +D +A A H A + + ++V + RG G GI ++ G Sbjct: 181 AKLSKTLGITCTLYNDTNMIAEALHRQDAEKYSGNFVVVYIDRGVGMGIFIKNALYRGET 240 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G E GH P G C CG GCLE A+ A+ + L K+ S + I+ Sbjct: 241 GAAAEYGHSPFTPDGAACRCGKKGCLEAYIADYALYREAQKLPKETSPSAMFYGPEYIQN 300 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + A GD+ A +V G LG ++A I+L +P +IV+ G+ +A + + + Sbjct: 301 LRARARVGDAQAQKVFTDAGFALGVSLARTISLLDPSRIVLTGKAMQAYDLFKHGMNKGL 360 Query: 360 NTQALKAFRTNLPVVRSELDHR 381 + L + + D Sbjct: 361 ESSLLAPLLDAVNLEVLPWDED 382 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 321 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 164/370 (44%), Gaps = 11/370 (2%) Query: 33 ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRN-FHAIGV 91 ++ +++ + + VT I L++ G + E STGGRRA++ + + V Sbjct: 2 LTLTDLSKLTHKSLPLVTGIVNDLVQDGYVVEHGLAPSTGGRRALTFLLNKEKQKFIVAV 61 Query: 92 RLGRHDATITLFDLSSKVLAE-EHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAI 150 + + T+ ++D+ + + E L +QT ++ I +I +++ I Sbjct: 62 SVDQLITTVVIYDMLNNIQVEPAKIYLNLADEQTSMALFISFITGYIAKSGISEEQILGI 121 Query: 151 SVILPGLVDPDSGKIHYMPHIQVENW-GLVEALEERFKVTCFVGHDIRSLALAEHYFGAS 209 + +PG+++ G +++N L L + K ++ +D +ALAE FG Sbjct: 122 GIGMPGVINAKLGV--NHTFFKIKNEGNLKNYLSDALKFPVYIDNDSSLIALAELKFGEG 179 Query: 210 QDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIA 269 ++ +D ++V + G G G+I NG IF G +G GE HI + + C CG GCLE Sbjct: 180 RNMKDVMVVNIGWGIGLGMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVDT 239 Query: 270 ANAAIEQRVLNLLKQGYQSR-----VPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 + + +R + G SR + + AA GD LA ++ +GK Sbjct: 240 SLLVLVERAKAEIAAGISSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIGK 299 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS-A 383 ++ I++ NP+ IV+ G A K+ + I+ IN + + + S RS Sbjct: 300 GLSTLIHILNPELIVLGGRGATAGKIFMAPIQHAINEFCIPRLADHTKISVSASAERSEL 359 Query: 384 IGAFALVKRA 393 +GA LV Sbjct: 360 LGAAILVVEN 369 >UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C9NFC9_9ACTO Length = 418 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 167/407 (41%), Gaps = 25/407 (6%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPI---SRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + D V++ N + V R + G +R ++ + L A+V+ + QL++ G + E Sbjct: 11 KADKDTVRRHNLSLVLRAVRDEGEAGEATRAGVSARVGLTRAAVSSLVEQLLDSGFVTES 70 Query: 66 DQQAST-GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSS--KVLAEEHYPLPERTQ 122 + S GR ++ +GV + ++ + DL+ +V EH Sbjct: 71 GKTFSGQAGRPGTALKVARTGPAGLGVEINIDYVSVCVVDLAGTGRVRQTEHLDNRGAPP 130 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + A+ +DS + + + ++ LPGLV G + P++ + Sbjct: 131 GEVLARAAGIAARTLDSAREQDLCPVGTALALPGLV--SGGSVRQAPNLGWNQVAAEDLF 188 Query: 183 EERFK--------VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI 234 E + ++ ALAE +FG + + G G ++ +G + Sbjct: 189 GEALAGLRPGTAALPVRSENEANLAALAELWFGGLGTVRSFLYLTGEIGVGGALVLDGEL 248 Query: 235 FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDD 294 G +G GEIGH+ V+P G C CG+ GCLE A +A+ + G + V Sbjct: 249 LRGAHGFAGEIGHVVVDPAGPECRCGSRGCLEQYAGQSALLRAAGIGEGAGGAAGVM--- 305 Query: 295 CTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPA 354 + + A GD +A + GR LG+ ++ A+NLF+P +V+ G L P Sbjct: 306 ----ELERRAQAGDPVALAAVADAGRMLGQVLSGAVNLFDPDAVVLGGIYRGLMPWLAPP 361 Query: 355 IESCINTQALKA--FRTNLPVVRSELDHRSAIGAFALVKRAMLNGIL 399 + + + + R + S + +A GA ALV + +L + Sbjct: 362 ADEELTGRVVSGLWSRGGGRLRASSVAGDAARGAAALVVQDVLADPV 408 >UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN99_9FIRM Length = 450 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 94/411 (22%), Positives = 177/411 (43%), Gaps = 18/411 (4%) Query: 1 MTPGGQAQIG-NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIER 59 M G N++ VK N +A+ +L++ +G +SR IA + L PA+VT I QL+ Sbjct: 45 MEGEVMGYTGINLENVKVSNRSAILKLLNDHGAMSRKDIALELGLTPATVTLICTQLLSA 104 Query: 60 GLIKEVDQ--QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPL 117 G++ E + + GR+ +SI + + + V + + I++ DL +++A Sbjct: 105 GILVEKGEMEEEKRAGRKKVSIDINYQYKYVLSVSIEAPETCISISDLKGRLIAGRKLKT 164 Query: 118 PER-TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENW 176 Q + + + ++ + LPG V D+G + I E Sbjct: 165 DGALEPQVFLKQVADEGKSLMWEQGISKESVLGAGISLPGPVKRDTGVSLHAYRIWNEAV 224 Query: 177 GLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFI 236 + E ++ + V +++++ A E +G ++ E+ + ++ G G+ II +I+ Sbjct: 225 PVGEYMKMYLDLPVVVENNVKAFAEGELIYGTGKNQENLLFIKWGPGVGSAIIIQNKIYD 284 Query: 237 GRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV------ 290 +N EIGH VEP G C CG GCLET A A+ +RV + + Sbjct: 285 SQNSKTAEIGHYIVEPGGLPCRCGRRGCLETHVATHAMAERVRRACTKESMPGLYAFVDG 344 Query: 291 PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKV 350 ++ ++ + + D ++I+ + L +T+ I L P K++I G + E Sbjct: 345 DVEKIEVRNMEQWIEIEDPGLQKIIDDIVERLARTVVNTITLLAPDKVIIYGFMFE---- 400 Query: 351 LLPAIESCINTQA--LKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGI 398 + I+ + +++S L R IG A+V M G+ Sbjct: 401 -MDHIQKRFLDFCTYYDSLYDGDYILKSGLSDRIGYIGPLAIVVNEMFLGM 450 >UniRef50_C4Z4E9 N-acetylglucosamine repressor n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z4E9_EUBE2 Length = 378 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 164/396 (41%), Gaps = 20/396 (5%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 +Q VK+LN ++RLI ISR +IA+Q L+ +V + + L+E GLI+ Sbjct: 1 MDSSQKLTNTDVKKLNKNRIFRLIYNSDKISRQEIADQLGLSLPTVNQNLKMLMEDGLIE 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 V STGGRRA +I + AI V + + + L +++ Sbjct: 61 YVGNFTSTGGRRAQAITIDNNARKAISVNIKADYINVDVVGLKGQIIYSMAVKAHFSKSS 120 Query: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALE 183 L +A+ +D +++ + + +PG++D + + P ++ +N+ + + Sbjct: 121 AYIEKLKDAVRHAVDYVGADADDILGVGITVPGILDDEKQILISAPPLKAKNYDFTKLIS 180 Query: 184 ERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 V +D R+ A A+H+F + ++ I + + G G I+ I G + G Sbjct: 181 -AIDYPVVVMNDARAEAYADHWF-NGKPEDEKIYIMLGEGVGGAYINASAIRNGVHNRGG 238 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 E GH+ + P G++C CG GC E + + + D T+ + Sbjct: 239 EFGHMVIHPEGKQCLCGKKGCFEAYVSEKVLSSEL---------------DMTLDNFFEL 283 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC-INTQ 362 A +G+ S V++ +L I + + IV+ G + K +I+ +N Sbjct: 284 AVQGNKNNSNVLDEYMDNLALGINNIYTMMDCD-IVLGGTVAPYLKQYENSIKERLVNDY 342 Query: 363 ALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGI 398 + L + +S +GA ++G+ Sbjct: 343 SFDTDADYLRISDGG-GRKSGLGAALSFVARFIDGV 377 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 3/307 (0%) Query: 89 IGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKLREL 147 +G+ LG L D++ K+L + P + + N L EL Sbjct: 4 LGIDLGGTSIKAGLVDINGKILKKGQVPTGAGEGTTAVLKRIKNLARDLAGEQGLALGEL 63 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFG 207 I + +PG VD G +H P++ ++ L + L + + +D AL E + G Sbjct: 64 EGIGIGIPGSVDVARGLVHLAPNLFWRDFSLRDELAALLDLPVAIENDAHVAALGEMWQG 123 Query: 208 ASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLET 267 A + ++V + G G+G+I +GR+ G G E+GHI++ G +CHCG GCLET Sbjct: 124 AGRGYTSLLMVTIGTGIGSGLIIDGRVHHGLFGYGAEMGHIKMVCDGRQCHCGGHGCLET 183 Query: 268 IAANAAIEQRVLNLLKQGYQSRVPLD-DCTIKTICKAANKGDSLASEVIEYVGRHLGKTI 326 +A+ A+ + L GY S + + K I AA GD LA VI+ +LG + Sbjct: 184 LASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAACYLGTAL 243 Query: 327 AIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA-IG 385 A A+ L P+ I+I G +A +V+L I + +PV+++ L + + IG Sbjct: 244 ANAVLLVGPEAIIIGGGPAQAGEVILDPIRKHLAAAMGTWQLKQVPVLQAALGNDAGIIG 303 Query: 386 AFALVKR 392 A L + Sbjct: 304 AAYLAMK 310 >UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV97_9CLOT Length = 406 Score = 320 bits (822), Expect = 5e-86, Method: Composition-based stats. Identities = 77/369 (20%), Positives = 166/369 (44%), Gaps = 8/369 (2%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 + +I ISR + + + + ++V I LI G++ E D + GR+ + + Sbjct: 15 RNKILNIIRSNENISRYDVKKMTMYSMSTVLDIIDDLIASGMVYEADCEEPRVGRKPVWL 74 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYP-LPERTQQTLEHALLNAIAQFID 138 + IG + D + +++ + LP++ + + L+ I ID Sbjct: 75 RLNPEGGYFIGAEFNAFHLHCAMLDFTGEIIYQSEEDLLPDQGKDAILALLIRHIHAAID 134 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIR 197 + + K ++ AISV +PG ++ D + EN + + LE+ F + C++ +++ Sbjct: 135 AVKGKPGQIFAISVGIPGYLNEDKSIALSHFRLKDWENVPVKKILEDEFHLPCYLDNNVN 194 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 +A A + + DC D + V + G + N + + R G GE+GH++V P G C Sbjct: 195 VMAFAYKWLRYNGDCRDFLFVSIRTGVRIVPVINNHLILSRGGLSGELGHVKVAPHGTLC 254 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGY------QSRVPLDDCTIKTICKAANKGDSLA 311 CG GCL + ++ +I ++ + G + D T++ C++A + S + Sbjct: 255 SCGGIGCLNSEISDLSILGKLKAGFEFGRFPEIMEMAGGDPDKVTLEMFCESAAQEHSDS 314 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 +++ + LG+ + +A+N+ P+ +V++G++ + + I + ++ L Sbjct: 315 VKLMLDLANILGEALGMAVNILAPEVVVLSGQLAQLGEPFFQEISKVLERNVVQEIYQGL 374 Query: 372 PVVRSELDH 380 V S + Sbjct: 375 KVTASVFNE 383 >UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG9_9FIRM Length = 322 Score = 320 bits (822), Expect = 5e-86, Method: Composition-based stats. Identities = 78/320 (24%), Positives = 154/320 (48%), Gaps = 11/320 (3%) Query: 85 NFHAIGVRLGRHDATITLFDLSSKVLAEEHY---PLPERTQQTLEHALLNAIAQFIDSYQ 141 + + + + +G T LF K++ + Y ++ + + ++ +Q Sbjct: 2 SKYYLIMDIGGTKTTGALFTEDGKIVDDYTYVSKSPTFEGKEAVYQNTRGVLDHIVERFQ 61 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLAL 201 L++++ I V PG +D G I + P ++ +N+ LVE L F++ + +D AL Sbjct: 62 VDLKDVLGIGVGCPGPLDSRKGIIIHAPLMRWKNFPLVERLSHDFQLPVALDNDGNLGAL 121 Query: 202 AEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGN 261 AE G ++ ++ + + V G G G++ NG I+ G++ GE+GH+ ++P G C CG Sbjct: 122 AEQRCGVAKGLDNVMYMTVSTGCGGGLVINGEIYHGKHDGAGEVGHMSIDPEGLDCPCGG 181 Query: 262 FGCLETIAANAAIEQRVLNLLKQGYQSRV------PLDDCTIKTICKAANKGDSLASEVI 315 GC E A+ A+ +R+ + G +S V + + +AA KGD+ A Sbjct: 182 KGCFELYASGTAMNRRMREDMAAGKKSMVFELAQHDPKKIEGRLLTEAAEKGDTYALAFF 241 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 + +LG I+ NL++P+ +V+ G +T+A + I ++ L+ + + Sbjct: 242 KQQAYYLGVGISNLFNLYDPEVLVLGGGVTKAKAFYHDEMMRVIRSRCLQPVEDD-SIRY 300 Query: 376 SELDHRSAI-GAFALVKRAM 394 S ++ R + GA+ L+K + Sbjct: 301 SVMNDRVVLYGAYHLIKDKL 320 >UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c RepID=D1VEG0_9ACTO Length = 423 Score = 320 bits (822), Expect = 6e-86, Method: Composition-based stats. Identities = 102/407 (25%), Positives = 170/407 (41%), Gaps = 29/407 (7%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIE-RGLIKE-VDQQA 69 + +++ N + + R + GP R + Q+ L +++ + L GL++E Sbjct: 15 QEELRRHNLSLLLRYVHLAGPTQRATLTAQTGLNRSTIGALAADLASTAGLVREESPDTH 74 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEH 127 S GR ++ +V ET + + LG L +L+ E PLP ER + Sbjct: 75 SGAGRPSLVVVPETERYQVLAFDLGVDRIIAARVGLGGALLSREVVPLPPGERGFTAVVD 134 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF- 186 + ++ L I V +P +V G + + P++ E L AL Sbjct: 135 LTAATARRLAEALG-PLTHCAGIGVAVPAVVRSADGFVRFAPNLGWEQQPLGAALRAALV 193 Query: 187 -KVT------------CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGR 233 + V +D ALAEH G ++ +D + + G GAGII NGR Sbjct: 194 DALPDRAIGGPVGSPAVQVANDADLGALAEHARGVARGHDDIVYLSGQVGLGAGIICNGR 253 Query: 234 IFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD 293 G G GE GH+ V P G+RC CG GC ET AI + + G Sbjct: 254 PLRGHGGYAGEAGHMIVNPTGQRCRCGARGCWETEIGTDAILRAAGHEPGDGG------- 306 Query: 294 DCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLP 353 +++ + A+ GD+ A + V R L + +NLFNP+ ++ GE+ + +V+ Sbjct: 307 --SVRAVVAEASAGDARARLALYEVSRWLAVGVGNLVNLFNPELVIFGGELRDLLEVVEH 364 Query: 354 AIESCINTQALKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGIL 399 + + L R ++ +V S L S++ GA L +L+ L Sbjct: 365 DVVGRMGAGGLTVSREHVALVPSALGGDSSLFGAAELAFAHLLDDPL 411 >UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178996E Length = 317 Score = 320 bits (821), Expect = 6e-86, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 12/315 (3%) Query: 82 ETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSY 140 + +GV LG LFD ++L E RT + + + N I + Sbjct: 6 NKQQEFVVGVDLGGTKIAAALFDSEGQLLNREQMETAGARTAEEVVARITNMIRSVSGGH 65 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEERFKVTCFVGHDIRSL 199 L + + PG V+ G + + ++ N L +E V +D + Sbjct: 66 P-----LRGVGMASPGTVNSREGIVIHGTNLPEWTNVPLKAWMERDLNTEVQVLNDANAA 120 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHC 259 A E+ GA + + + V + G G+GI+ +G++F+G N GE+GH ++P G +C+C Sbjct: 121 AWGEYVRGAGRGSTNMVYVTLSTGIGSGIVLDGKLFLGSNSFAGELGHHIIDPSGPQCNC 180 Query: 260 GNFGCLETIAANAAI----EQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 G+ GC E A+ AI QR+L + + + +A D +A EVI Sbjct: 181 GSHGCWEVFASGTAIGLAASQRMLTQTSVISELAAADGGVNARHVFEAKRLHDPVAVEVI 240 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 + ++ + I+ FNP +IV+ G ++ A ++L P + + + ++ +V Sbjct: 241 DRAVYYMALGLVNVIHSFNPDRIVVGGGVSRAGELLFPQLREMTDKLVMPSYLGTYEIVP 300 Query: 376 SELDHRSAI-GAFAL 389 + L + GA AL Sbjct: 301 AGLRDDVGLVGAAAL 315 >UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B509AF Length = 408 Score = 319 bits (820), Expect = 8e-86, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 168/391 (42%), Gaps = 13/391 (3%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 V L+ SR +IA +S L +V K L+ RG+++E++ S GR + Sbjct: 21 LRKVLDLVVSGEATSRAEIARRSGLVRTTVGKQVDHLVARGILEELESSESVRGRPPRVL 80 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFID 138 R + + + + DL+ +VLA+E + +T+ + + + Sbjct: 81 TLSPRAGTVAVADVDTLASQVAIADLTGRVLAQETVGVRIATGPETVLETVTERLMALLA 140 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIR 197 R + A+ + LP VD G + + + + L +RF+ V +D Sbjct: 141 QCGRDSGRVRAVVMGLPAPVDFQRGCTVRPTGMPGWGGYPVADELRKRFRCPALVDNDAN 200 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGII-SNGRIFIGRNGNVGEIGHIQVEPLG-- 254 +AL E G QD + +++ G GAGI+ + G ++ G +G G+IGHI+ G Sbjct: 201 LMALGEA--GQEQDGTPLVCIKISAGVGAGIVTAEGELYRGADGAAGDIGHIRAVGGGGD 258 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CGN GCL +A+ A+ + + +S ++ + + + A Sbjct: 259 VLCSCGNDGCLSALASRPAVLRSLGI-----PESTDEDPLHGVRVLAERVADNEPNAVRA 313 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 + G +G+ A+ +++FNP+ +V+ G ++E LL + + + + L + + + Sbjct: 314 LRQAGTDVGEIAAMLVSMFNPRTLVVGGPLSELRDDLLSGVRAVVYQRGLALATSKMTIT 373 Query: 375 RSELDHRSAI-GAFALVKRAMLNGILLQHLL 404 L + I G AL R + + + ++ Sbjct: 374 TPRLGESAGIHGGIALATREVFSAQGVARMM 404 >UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57B53 Length = 381 Score = 319 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 160/379 (42%), Gaps = 17/379 (4%) Query: 22 AVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVT 81 + L+ SR+ +A L ++V+ T+ L+ G++ E + S GGRR + Sbjct: 8 RLLWLVAHGHATSRMDLARALGLPQSTVSVRTQALMSAGVLSESGEGRSAGGRRPKLLTV 67 Query: 82 ETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSY 140 H +G I D++ ++L PL + + L L A+ + Sbjct: 68 NAEFGHVWAADVGSRHVRIGALDIAGRLLEVHERPLDISQEPRELVAGLAAAVRDVMAGA 127 Query: 141 QRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSL 199 + + V PG VD D+G I + + + AL E F++ V +D L Sbjct: 128 D-CPGRALGLGVAFPGPVDVDAGTITLPSRMPGWRGFAVRAALAEHFELPVVVDNDANML 186 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV-EPLGERCH 258 AL E GA ++V+ G G+GI+ G ++ GR G G+I H++V + C Sbjct: 187 ALGESVAGA--PGRTLLVVKAGTGIGSGIVLGGELYRGRAGVAGDISHVRVPAAEDQPCT 244 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYV 318 CGN GCLE +A+ AA+ ++ L T + A G A+ + Sbjct: 245 CGNRGCLEVVASGAALVGQLQAQ---------GLKLETTAQVMATAEDGHPEATTAVRRA 295 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 G LG+ +A +N NP ++++ G ++ + + + A+ + + L L + R Sbjct: 296 GLRLGEVLATVVNFSNPDEVLLGGALSGS-EAFVAAVRGALYERCLPLATRELRIDRVRF 354 Query: 379 DHRSAI-GAFALVKRAMLN 396 + + GA AL A+ Sbjct: 355 GADAGLYGAGALALDAVFE 373 >UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGH9_NAKMY Length = 386 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 98/394 (24%), Positives = 181/394 (45%), Gaps = 16/394 (4%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + + + + + AA+ RL+ +GP SR +A + +L+PAS+T+I R L + GL+ E + Sbjct: 4 RTESFPALSEGSRAALVRLL-VHGPASRADLARRLRLSPASLTRIVRTLEDSGLVVESET 62 Query: 68 Q-ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 GR + ++ H +G++L + + D+ S VL PL Sbjct: 63 TVPQRMGRPSQAMEVNVDAVHLVGIKLLAGEINLVRTDMRSTVLGHRTIPLQTVPLDPAI 122 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + AI + + A+ + L G VDP S + + P + E+ L + ER Sbjct: 123 DRITEAI---LAEVAVDPA-VGAVGISLAGPVDPSSDMVTHSPFLGWEDVPLARLVSERT 178 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + + +D+R+L AEH+FGA+ D +LV + G G G++ R+ G G G+IG Sbjct: 179 GLPTVIENDVRALTAAEHWFGAAAGATDFVLVTIGAGIGCGVVIGDRLVDGNTGGAGQIG 238 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H+ + P G C G+ GC + A++A+ + L + D T + A++ Sbjct: 239 HLPITPSGPLCERGHRGCARSYLASSAMVGQASMALHR--------PDLTYAELVSLAHQ 290 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 G+ +AS V+ G LG I + + P K++I+GE +++ ++ + Sbjct: 291 GERVASRVVRDAGYALGTLIGLVTAITAPSKVIISGEGVTMVPLVMDVVQERASE-VEHW 349 Query: 367 FRTNLPVVRSELDH-RSAIGAFALVKRAMLNGIL 399 ++P+ +E A GA + + +L + Sbjct: 350 AVPDVPIEIAEFGFVEWARGAAVIALQQLLEAAI 383 >UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepID=A4WVU3_RHOS5 Length = 425 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 160/366 (43%), Gaps = 6/366 (1%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR---RA 76 V+ + G +R+Q+A ++PASVT I +LIE GL++EV + Sbjct: 32 RQQVFERVRAAGLTARVQVARDLGVSPASVTTIVSELIEAGLVEEVATRRGGESGRGRPV 91 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP--ERTQQTLEHALLNAIA 134 +++ +G+++ D + + D + ++LAE H +L L + Sbjct: 92 VALGVRGAAHRVVGLKISDRDLSAVVMDFAGRLLAEHHEERRPVALAPASLLAVLETLLD 151 Query: 135 QFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGH 194 + +EL A+ + LPG VD G++ + + + L ER + V + Sbjct: 152 RVTAKAGLARQELAAVGIGLPGYVDSTGGRVLWSSILAERDVPLGRLATERLGLPVQVDN 211 Query: 195 DIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLG 254 D A+AE +FGA + D ++V + G G G+++N RIF G G E+GH +V+ G Sbjct: 212 DANLCAMAELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIFRGARGIGMELGHTKVQLDG 271 Query: 255 ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEV 314 C CG GCLE A+ A+ + L ++ + ++++ A G+ A + Sbjct: 272 ALCRCGQRGCLEAYVADYALAREATTALNWTHRESQSM-AILLESLHDHAKAGNQAARSI 330 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVV 374 GR+L +A +NL +P I++AG D + + +N L R + Sbjct: 331 FRRAGRYLAVGLANIVNLVDPPLIILAGARLRFDYLYAEDTLAEMNALVLATGRPLPEIE 390 Query: 375 RSELDH 380 Sbjct: 391 IHAWGE 396 >UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acnes RepID=D1Y8Z8_PROAC Length = 403 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 85/395 (21%), Positives = 166/395 (42%), Gaps = 14/395 (3%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE-VDQQA 69 + ++ +N A + + PISR +++ ++ L+ AS+T + +L RGL++E + Sbjct: 12 DHGTMRTINLALLLGALRSE-PISRAELSRRTHLSKASITNLAAELAARGLVREGSPDRN 70 Query: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ--TLEH 127 T GR + E +G+ + + + DL VL + P + + Sbjct: 71 GTVGRPGTMLTLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDVASLPISDVLD 130 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK 187 + + ++ R + + V PG++ +G +H ++ + L L +R Sbjct: 131 EVAGIMRDTLEQLHSARRHVAQVMVSAPGVIKQPAGTVHLASNLGWRDVPLRSQLLQRLD 190 Query: 188 VTC--FVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 V +D + A+AE+ D D + + G GAGII+ G++ G +G GE+ Sbjct: 191 ADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLMRGWSGFSGEV 250 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 GH+ ++P CHCG GC E + L R+ + I A Sbjct: 251 GHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLDAQPIDRLLI------QIQDRAT 304 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 +GD ++ + L + +++ I++ NP+ +V+ G + L+P I + + + L Sbjct: 305 RGDQQVLNALDNLATSLAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTARRLD 364 Query: 366 AFRTNLPVVRSELDH-RSAIGAFALVKRAMLNGIL 399 L + ++L SA GA ++ L Sbjct: 365 PGAGAL-LAGAQLGMVSSAHGAALTALDSVFANPL 398 >UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepID=B7GQ98_BIFLI Length = 404 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 164/369 (44%), Gaps = 5/369 (1%) Query: 3 PGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 A + V + N + + + + G SR QIA+ +L PA++TKIT +LIE G+I Sbjct: 2 ATNTAHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMI 61 Query: 63 KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 +E + RR+I + +T F IG++ R I +FDL L+ E+ P Sbjct: 62 EETGDLEGSKNRRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPT---VY 118 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEA 181 + + I Q ++ ++AI + +PG + G+ + + ++ Sbjct: 119 DNTINDTIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDE 178 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCE-DSILVRVHRGTGAGIISNGRIFIGRNG 240 F+V F+ D R+ ALA + F S + + V G G G+I NGR+ G G Sbjct: 179 FATAFRVPVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLG 238 Query: 241 NVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 EIGHI ++ G C CGN GCLE + AI ++ + + + + Sbjct: 239 AATEIGHISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARAL 298 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 A GD A ++ V +++G N +NP+ I+I + EA +LL + + + Sbjct: 299 FAKAGDGDEAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVA 358 Query: 361 TQALKAFRT 369 +A+ Sbjct: 359 ERAIPEINA 367 >UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=Actinobacteria (class) RepID=A9WL96_RENSM Length = 416 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 170/387 (43%), Gaps = 14/387 (3%) Query: 23 VYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTE 82 ++++ +R ++AE + LA ++V L GLI + S+GGR + Sbjct: 38 LFQIFRDGQARTRAELAELTGLARSTVAARLDALTALGLIGPAGEAVSSGGRPPSRVAFN 97 Query: 83 TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQ 141 V +G + L DL ++L E + + ++ + + Sbjct: 98 PTARIVFAVDVGATHLLVALTDLGGRLLGERKVAADVSDGPEKVLDLVIRQCQELLAESG 157 Query: 142 RKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLA 200 R +EL I + +PG V+ SGK P + + + + ++ F V +D+ +A Sbjct: 158 RSAKELAGIGIGVPGPVEHSSGKPASPPIMPGWDRFDIPSYIQRVFDTDVLVDNDVNIMA 217 Query: 201 LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL-GERCHC 259 L E ++ +D + ++V G G+GIIS G + G +G G++GH++V G C C Sbjct: 218 LGERAA-HWREAQDLLFIKVATGIGSGIISGGLLQRGADGTAGDLGHVRVARGEGIICRC 276 Query: 260 GNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVG 319 GN GCLE IA+ AI + + + + I G+ A +V G Sbjct: 277 GNEGCLEAIASGPAIARALTE---------SGVPANNGEEILALVRAGNVQAIQVFRQAG 327 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 R +G +A +++ NP +VI G ++ A + LL + + ++L + L +V+S+ Sbjct: 328 RDVGDVLATCVSMLNPAVVVIGGSLSAAGEHLLAGVREVVYARSLPLATSRLSIVQSKAG 387 Query: 380 HRSA-IGAFALVKRAMLNGILLQHLLE 405 + +GA +V +L+ + L Sbjct: 388 AEAGVLGASRMVTDHVLSASRIDAALA 414 >UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter RepID=B0K0J6_THEPX Length = 381 Score = 317 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 171/391 (43%), Gaps = 24/391 (6%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 G L+K +N A V +I + PISRI++++ +++ ++++ I +LIE GL+ Sbjct: 1 MKDYTKGTSGLIKNINKANVLDVIKKMQPISRIEVSKVLKMSKSTISAIVDELIEEGLVI 60 Query: 64 EVDQQA-STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 E T GR+ I + IG+ + ++ L +L K+L + + + Sbjct: 61 ENGYGEKGTVGRKPIQLSFNPDARFVIGISVESTNSIGILTNLEGKILKKIKWETGIK-- 118 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + + ++ I + + + + I + I D G + P ++ N+ L + L Sbjct: 119 EQAFNGIVKGIKELAEEDKNIIGIGIGLPGIT----DIQKGIV-DAPGLKWSNFDLKKRL 173 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 E F +V + + AL E + G ++ E+ +L+ + G G+GI NG + G + Sbjct: 174 SEIFNYNIYVDNSVNYAALGERWIGCCREIENFVLINIGNGIGSGIYVNGTLLRGNSYAA 233 Query: 243 GEIGHIQVEPL--GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI 300 GE+G++ + ++G E A+ +A+ + V L T++ + Sbjct: 234 GEVGYMAIGEDAFERVYSYEDYGYFERKASLSALVESVSKSL---------PYVKTMEGV 284 Query: 301 CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN 360 K K + + + ++L IA +++ NP+ I+I G+I + + ++ + Sbjct: 285 VKEYKKQNPACVQAVSQFIKNLSMGIANIVSILNPEVIIIGGDILNYEIDIRQELKEKVK 344 Query: 361 TQALKAFRTNLPVVRSELDHRS-AIGAFALV 390 + + ++L + AIGA A V Sbjct: 345 RIVPF----DFDIKVAQLGEDASAIGAVADV 371 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 317 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 178/386 (46%), Gaps = 11/386 (2%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 + I G + ++++ L+ +VTK ++ + G I + + ++GGR Sbjct: 20 KRIITHYIY-NGSSTIPDLSKELDLSVPTVTKFIGEMCDDGYINDYGKLETSGGRHPNLY 78 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLA-EEHYPLPERTQQTLEHALLNAIAQFID 138 + + +GV + R I L + ++ + + P + L I FI Sbjct: 79 GLNPESGYFLGVDIKRFAVNIGLINFKGDMVELKMNIPYKFENSIEGMNELCKHILNFIK 138 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRS 198 +++ I+V + G V+P+SG + E L + L E+ + +D R+ Sbjct: 139 KLTINKEKILNINVNVSGRVNPESG--YSFSQFNFEERPLADVLSEKLGYKVTIDNDTRA 196 Query: 199 LALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCH 258 + E+ G + +D I V V G G GII +G+I+ G++G GE GH+ CH Sbjct: 197 MTYGEYMQGCVKGEKDIIFVNVSWGVGIGIIIDGKIYTGKSGFSGEFGHMSAYDNEIICH 256 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVP------LDDCTIKTICKAANKGDSLAS 312 CG GCLET A+ +A+ + +L ++ G S + + T+ I A NK D L Sbjct: 257 CGKKGCLETEASGSALHRILLERIQSGESSILSTRIATEENPITLDEIIAAVNKEDLLCI 316 Query: 313 EVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLP 372 E++E +G+ LGK IA IN+FNP+ ++I G ++ + I++ + +L + Sbjct: 317 EIVEEIGQKLGKQIAGLINIFNPELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKDSA 376 Query: 373 VVRSELDHRSAI-GAFALVKRAMLNG 397 ++ S+L ++ I GA L + M Sbjct: 377 IITSKLKDKAGIVGACMLARSRMFES 402 >UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridium acetobutylicum RepID=Q97D10_CLOAB Length = 385 Score = 317 bits (813), Expect = 6e-85, Method: Composition-based stats. Identities = 80/381 (20%), Positives = 173/381 (45%), Gaps = 11/381 (2%) Query: 17 QLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRA 76 N + L+ + ++++ I+ + ++ +V +LI G ++E +STGGR+ Sbjct: 7 NSNKGKILNLLYRKRELTKLDISNEIGVSVPTVISNVNELIREGFVEESGVASSTGGRKP 66 Query: 77 ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHALLNAIAQ 135 I + + +A GV + + A + L +L ++ + + + E + +++ + + + Sbjct: 67 IIVSFIPNSRYAFGVDINPYMARVVLTNLDLEIKYDVEFLIEELKDIKSIMKRISLIVKE 126 Query: 136 FIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHD 195 ++ + ++++ I L G VD ++ + +I V++W E F+ F+ ++ Sbjct: 127 ALEFTKIDEKKVLGIGFSLQGTVDEENLVLKRAINIGVKDWDFK-LFENLFQFPLFIENE 185 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 + ALAE G +++ + + + V G G GI+ G+++ G+N GE+GH+ + P G+ Sbjct: 186 ANAAALAELKIGIAKEERNLVYISVSSGLGTGIVIEGQLYKGKNKRAGEMGHMTLVPHGK 245 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVI 315 C CG GC E A+ A+ L + ++ + +A + + Sbjct: 246 LCRCGRKGCWEMYASQKALLDEFNEL--------SDVKVTKLEQFFNLIMIKNKVAEKCL 297 Query: 316 EYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVR 375 +L I + +F+P IV+ GEI+ V L +++ I + R + + Sbjct: 298 NNYLNNLASGIQNIVLIFDPHYIVLGGEISGYSDVYLDSLKDKIFDENEFYNRGDFKLFP 357 Query: 376 SELD-HRSAIGAFALVKRAML 395 S L + S +GA L + Sbjct: 358 SRLKRNSSILGAALLPIQKAF 378 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 317 bits (813), Expect = 6e-85, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 19/321 (5%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDSYQRKLR 145 +AIGV LG + I + +L + +R ++ + + +AI YQ Sbjct: 3 YAIGVDLGGTNLRIAAVEERGTLLEKVTLGTQVQRGREYVVGQMTDAIRHVTTKYQ-DHG 61 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 +LI I + +PG +D D+G + P++ N+ + + +E R + +D + A+ E Sbjct: 62 KLIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGTKVILENDANAAAMGEK 121 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 + GA +D +D ++ + G G GII GR++ G NG GE+GH V P G C CGN GC Sbjct: 122 WLGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHHTVLPDGHICGCGNHGC 181 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKGDSLASEVIEYVG 319 LE A+ A+ + + G + + + K I + A +GD A E+ VG Sbjct: 182 LEQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQLAIQGDKAAQEIFNTVG 241 Query: 320 RHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQAL----------KAFRT 369 +G +A +N N VI G + A + + ++ A + Sbjct: 242 HSIGIAVANMVNALNFPMYVIGGGVASAWDAFHNPMMEEVRKRSFIYRVTAPEAVAAGQK 301 Query: 370 NLPVVRSELDHRSAI-GAFAL 389 V R+ L + + GA L Sbjct: 302 RTIVTRALLGGDAGLFGAARL 322 >UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=B5XVY7_KLEP3 Length = 402 Score = 316 bits (812), Expect = 6e-85, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 156/396 (39%), Gaps = 24/396 (6%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV-DQ 67 N++ + N + + +G ++R ++A + L P +V+ I ++ + L+ + Sbjct: 5 GTNLEHARVHNRRVIIEAVRLHGELTRAELARLTALTPQTVSNIVAEMEQMDLLTSHQPR 64 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 +AS G+ A+ + + +IG+ L + L DL+ +V + + Sbjct: 65 RASGRGQPAVPVSLNPASAWSIGIHLDHQTLIVVLVDLAGEVHFRRLILVQKPQPGATFA 124 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERF 186 L + + ++ + V++PG + + E + L Sbjct: 125 RLAEVLDEIRALPTLDWSRVLGMGVVMPGPFGVEGISSTGPTTLNGWEGVDVAAELGRLS 184 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + + +D A+ E + G ++ + + + G GAGI ++G ++ G N GE+G Sbjct: 185 GLPVTLENDATVAAIGERFHGVARQLNSFVYLYIGTGLGAGIFTDGHVYTGHAHNAGEVG 244 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 HI V P G C+CGN GCLE + A +P D ++ A Sbjct: 245 HIVVAPNGRPCYCGNEGCLERYVSLQA----AYEFCGLDPYRALPEDLLSVD-----AAL 295 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITE--ADKVL--LPAIESCINTQ 362 D + ++ L + I + +F+ + +V+ G + +KVL LP + + + Sbjct: 296 FDQWITSILAP----LRQAINLLECVFDAETVVVGGMMPAPLLEKVLARLPPLYQSVRGR 351 Query: 363 ALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNG 397 L A V +A+GA AL N Sbjct: 352 YLPAQ----RVKMGMTGTDTAALGAAALPIFDEFNP 383 >UniRef50_B5GCP5 Transcriptional regulator n=2 Tax=Streptomyces RepID=B5GCP5_9ACTO Length = 403 Score = 316 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 92/412 (22%), Positives = 176/412 (42%), Gaps = 25/412 (6%) Query: 2 TPGGQAQIGNVDLVKQLNSAAVYRLIDQYGP-ISRIQIAEQSQLAPASVTKITRQLIERG 60 T + N+ + N + V I ++ +SR+++AE + L+ +V+ ITR+L+++G Sbjct: 9 TKTSIRRGTNLPRMGDFNESVVLDAIRRHKAGLSRVELAEATGLSAQTVSNITRRLLDQG 68 Query: 61 LIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 + +E +Q++ G+ + +AIGV L T L DL V+A P P Sbjct: 69 VARESGKQSTGSGKPRTLLQVTPGARYAIGVHLDPAVITYVLLDLLGTVVARRSEPTPRG 128 Query: 121 TQ-QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGL 178 + L + ++ I+ ++ + + PG VDP +G + P + ++ L Sbjct: 129 VHTEALLAGMAASVGALIEDSGVDQERVLGLGIAAPGPVDPVAGLVIDPPELPGWGSFPL 188 Query: 179 VEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 E LE + D+ + A+AE + GA+ D + + + G+G G++ + + G Sbjct: 189 RERLEADTGFPALLDKDVVAAAVAERWSGAATDSRNFLFFYLGTGSGMGLVVDDTVLRGS 248 Query: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ---SRVPLDDC 295 +GNVGE+G G L ++ A+ + + L G++ + Sbjct: 249 SGNVGEVG----------------G-LGAACSSRALVEEAIELGALGHEFTPTDPQDAQR 291 Query: 296 TIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPA 354 +++ + + A G+ A+ +I+ G +G+ + A L + IV G LLP Sbjct: 292 SLQHLARIAADGEPRAAGIIDRWGVRIGRGVTAAATLLDSDTIVFGGPLWPLLAPRLLPL 351 Query: 355 IESCINTQALKAFRTNLPVVRSELDHR-SAIGAFALVKRAMLNGILLQHLLE 405 IE + V + + +A+GA LV L+ LL Sbjct: 352 IEPMVAESPFVKPVHGTTVTTTAIGEDVAAVGAACLVLDRTLSAQPRSLLLA 403 >UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus faecalis RepID=C0X1R1_ENTFA Length = 388 Score = 316 bits (812), Expect = 8e-85, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 172/396 (43%), Gaps = 19/396 (4%) Query: 9 IGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQ 68 I + +++ N A + I ++ ISR ++++ + L ASV+ IT +LI G I E Sbjct: 2 ISSKYTIREQNEAQILNQIIKHREISRAELSKITSLNKASVSSITNKLINDGFIIEKRIG 61 Query: 69 AST-GGRRAISIVTE-TRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 +T GR+ I + + + I + LG + L L K + ++ ++ Sbjct: 62 EATNRGRKPIMLTFNGSSSALVIAIDLGYNYIDGALASLDGKEIHRVQLIDTYVNKKNVQ 121 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF 186 + Q ++ +++ L G V ++ I + + LVE L + + Sbjct: 122 DLIHKVFNQLTSDCPHTHYGIVGMTIALQGQV-LNNKIISTSYN-DLAEINLVEMLNQEY 179 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 F+ ++ AL E+ F S D E+ + +H G G G++ NG++ +G G G++G Sbjct: 180 NFPVFLQNEANLSALGEYTF--SSDIENLASISLHSGIGVGLVKNGKLDVGNKGYAGQLG 237 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 H + P G +C CGN GCLE + I + L+ + N Sbjct: 238 HTILFPNGRKCTCGNHGCLEKYCSTQVIYHEISK--------EKNLNKINSDVVSILYNN 289 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKA 366 +S ++IE +L + AI L+ P+ ++ +T+ ++ I+ +N Q Sbjct: 290 KESKVVKMIEQYAYYLSIGVNNAIMLYAPELVIFNSPLTKKIPDIINIIQRNLNNQ---- 345 Query: 367 FRTNLPVVRSELDHRSAI-GAFALVKRAMLNGILLQ 401 F ++ V+ S ++ I GA +L + LN L+ Sbjct: 346 FTKDVLVINSPIEWNPVISGAISLSIQKFLNIEQLK 381 >UniRef50_Q185Y3 Putative regulator of a specific sugar metabolism n=6 Tax=Clostridium difficile RepID=Q185Y3_CLOD6 Length = 404 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 88/402 (21%), Positives = 176/402 (43%), Gaps = 8/402 (1%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 Q N+ VK N + +L+ P+SR+ +A+ + L +++ + +LI +I+ Sbjct: 2 MSNKQGSNIKDVKIKNKLIILKLLSTNTPMSRVDLAKSTGLTKMTLSNLVTELINENMIR 61 Query: 64 EVDQQ---ASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER 120 E++ A + GR+ I + + G+ + R+ + + DL ++ + P+ Sbjct: 62 EIESSTLNAHSSGRKPILLDISNISPCICGILIRRNICKVIISDLKGNIVKQLSETYPKC 121 Query: 121 TQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLV 179 + ++ + F + R++I I + G VD +G I P V N +V Sbjct: 122 LSNDVLKDIIKRM--FTKIMKINKRDIIGIGISSIGPVDDINGTILNPPDFGNVSNLNIV 179 Query: 180 EALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRN 239 + ++E + F+ +D S ALAE +G ++ + I + + G GAG++ ++ G Sbjct: 180 DFIKEMSDLPIFLINDANSGALAEKMYGLGKNISNYIYLHIMNGIGAGLVLENKLHTGNL 239 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-PLDDCTIK 298 G GEIGH + G C CGN GCL+ + + + +R+ +L S + D ++ Sbjct: 240 GQSGEIGHTSINFSGPLCSCGNNGCLDYYTSVSNLIKRIESLSHIYPNSPLINCKDFSLV 299 Query: 299 TICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESC 358 + AN DSLA +++ ++ + + L + I+I + + + Sbjct: 300 KLIDEANNKDSLAMFLLDEFCTYVSYALVNTLTLIDCSSIIIGYDFNIPGTFIENTLLKK 359 Query: 359 INTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGIL 399 + A + + V S + IG+ A+V NG + Sbjct: 360 LTASASFSKYKKISVRHSNFGANAPLIGSIAIVSYNFFNGSI 401 >UniRef50_C8XDB9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XDB9_NAKMY Length = 417 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 166/381 (43%), Gaps = 11/381 (2%) Query: 30 YGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAI 89 G SR ++A+ + L A+V+ + +LIER L+ E + S GR ++ + + Sbjct: 34 GGARSRARLAQDTGLTKATVSSLVAELIERSLVVEGTVERSGLGRPGRAVELDPDGVRFL 93 Query: 90 GVRLGRHDATITLFDLSSKVLAEEH--YPLPERTQQTLEHALLNAIAQFIDSYQRKLREL 147 G+ L D + + DL +VLA + + E + + + ++ ++ Sbjct: 94 GIELQVDDISGMVLDLPGRVLARQRLSRSMAELGPARALGEVADLARSLVAEAGSRVDQV 153 Query: 148 IAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERF---KVTCFVGHDIRSLALAEH 204 ++ + +PGL+D D+G + P++ + +V L R V +D A+A + Sbjct: 154 QSLHLAVPGLIDADAGMLALAPNLHWRDVDIVHTLMGRLQWNDARIGVDNDANMGAMAHY 213 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 S ++ + + G GAG+I +GRI G G GE+GHI + +C CG GC Sbjct: 214 ATSDSSGSQNLLYLAGAVGVGAGMIVDGRIVRGAAGFAGEVGHIALGSPDRQCGCGRRGC 273 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGK 324 ET + +A+ V + + + + IK + A GD + I LG Sbjct: 274 WETAVSLSALLDAVCGDAISKHPADLRAELVRIK---QRAADGDRQVLDAIAEQAHWLGI 330 Query: 325 TIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSA- 383 +++ N+ NP V+ G + + + + + + ++ L + V SEL+ +A Sbjct: 331 GMSVLSNILNPDTFVLGGHFSVLREYIREPVLAELRSRVLAGAVS--RVEFSELEFDAAS 388 Query: 384 IGAFALVKRAMLNGILLQHLL 404 +GA + ++ L + Sbjct: 389 LGAAHVGIAQLIADPTLARIR 409 >UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=A5IKW0_THEP1 Length = 379 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 94/399 (23%), Positives = 184/399 (46%), Gaps = 39/399 (9%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N +K LN ++ ++I + PISR I+E + L P+SVT++T++LI+ G I+E+ Sbjct: 4 NSPRIKILNKKSILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIG---- 59 Query: 71 TGGRRA------ISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ- 123 T G+ + I + F ++ +G + T + +V + P + Sbjct: 60 TMGKNSPGRRRRILLDLRKNAFLSLVFDIGVNITTYGVGFFDGEVEPRGTFNTPREPVEF 119 Query: 124 -TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + + I+ + IS+ +PG+VD + KI P+++ EN + E L Sbjct: 120 FNIVKEIYERISG--------EYRISRISLSVPGMVDMEEKKILLAPNLEWENVSIKELL 171 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGAS-QDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 + V ++ LAE Y ++ ++++ + + G GAG++ +G+IF G + Sbjct: 172 --KVDVPVLADNEANLSMLAEKYHSEDLRNVKEAVFIIIREGVGAGLMIDGKIFRGPSFT 229 Query: 242 VGEIGHIQVE-PLGERCHCGNFGCLETIAA-NAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 GE GH+ V +CHC N+GC E +++ N AIEQ L + + Sbjct: 230 AGEAGHMTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELPGKNAIEK---------- 279 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 +A + + A ++ ++ I +N+ NP+ +++ GE+ + L ++ + Sbjct: 280 -FQALKQRN-DAKRILMKFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFLDIVKDFV 337 Query: 360 NTQALKAFRTNLPVVRSELDHRS--AIGAFALVKRAMLN 396 + +ALKA +L + +E + S +GA L ++ Sbjct: 338 HQRALKAAVKDLKIRTTEFRNISSNLVGAAVLAVEDIIE 376 >UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5VW31_BRUO2 Length = 402 Score = 315 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 154/384 (40%), Gaps = 35/384 (9%) Query: 18 LNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV-----DQQASTG 72 ++ V +++ GP SR ++A + L+ ++T +T QL++ G I E + Sbjct: 3 IHLGMVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMP 62 Query: 73 GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERT-QQTLEHALLN 131 GR +S+ + GV +G + + DL+++++ + L H + Sbjct: 63 GRPPVSVRLVPSAHYVAGVYIGAEAVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTAD 122 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 + + + L L+ I + +PG VD + + + +A+E + Sbjct: 123 VLRNLVQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSINTGWRDVAFADAMEAELNIPTV 182 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V H++ ++ALAE ++G Q C + V + G ++ +G F E+GHIQ++ Sbjct: 183 VEHNVTAMALAEAHYGIGQGCPAVLYVYLGTG----LVVDGMPFRPGGHGAVELGHIQID 238 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 P G C CGN GCLET + + +R + + + AA + Sbjct: 239 PQGALCACGNRGCLETFVSERVLRER---------------GAGSAEPLL-AALARNPTL 282 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNL 371 + V H +A A+NL P IV+ G EA + + + + L R L Sbjct: 283 H---DEVAGHFTTALANAVNLLTPDLIVLGGHFAEAPEAFYARLRCDLPPRVLPHMRDVL 339 Query: 372 PVVRSELDHRSAIGAFALVKRAML 395 + R + + + Sbjct: 340 RIERGGFGNNAG------AVDHLF 357 >UniRef50_A6NTH3 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NTH3_9BACE Length = 377 Score = 314 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 74/393 (18%), Positives = 151/393 (38%), Gaps = 22/393 (5%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLID-QYGPISRIQIAEQSQLAPASVTKITRQLIERGLI 62 + + ++++N V+R + P+++ +A Q ++ ++T+ +L+ GL+ Sbjct: 1 MSKPNPHSTVELRKMNRNRVFRALYHTTQPLTKQDLAYQLSMSLPTLTQNLSELMAMGLV 60 Query: 63 KEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 + S+GGR+ + A+GV + + DL + L + LP Sbjct: 61 DNSETAGSSGGRKPRILSVVPGARWALGVEISSRHIRLVALDLQVRELGFRAFDLPFHAG 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 + L + FID +L+ + V +PG+VD + P + V + + Sbjct: 121 EEYAVRLAQTVECFIDELALDREKLLGVGVSIPGIVDAAQQSVTTAPTLGVNRLDVRA-I 179 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 + + +D + AE + +D + + RG G I ++G ++G +G Sbjct: 180 AQHIPYPVCLVNDANAGGFAECW--GRSGVQDMAYLSLSRGVGGAIFTSGTAYLGASGRS 237 Query: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 GE GH+ + P G C CG GCLE + A + + T++ + Sbjct: 238 GEFGHMCIHPGGVPCSCGRKGCLEAYCSTARLSDDMG---------------ITLEDFFQ 282 Query: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 ++GD + + L I + Q IV+ G+++ + I+ + + Sbjct: 283 TLSQGDDAFAALWAQYLDDLSVGILNIHAALDCQ-IVLGGKLSRFMEEKFDDIDGRL-RR 340 Query: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKRAM 394 A++ + S IGA Sbjct: 341 LDPAYQEAPYLSICRYYDHSNGIGAALYFVDQF 373 >UniRef50_C2BT73 Transcriptional repressor n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BT73_9ACTO Length = 442 Score = 314 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 166/394 (42%), Gaps = 19/394 (4%) Query: 13 DLVKQLNSAAV-YRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71 + ++ N + YR+I +SR +A ++ L ++VT++ L++ G+I+E + Sbjct: 35 ESLRNHNLQLLTYRIITGSEVMSRADLAHETGLNRSTVTRLIEHLLDFGIIREGSTRVGP 94 Query: 72 GGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEE--HYPLPERTQQTLEHAL 129 GR +I + R IG +GR + + DL ++AE+ +P + Q+ L Sbjct: 95 SGRPSIMLTPARRTHGGIGAEVGRDYISACVMDLRGNIIAEQFDQVDVPAYSPQSTLGKL 154 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + + Q L I+ G++ + +H PH+ N L + + + Sbjct: 155 ATMVNELTSQIQHSGLSLCGITCGFSGIISSSTSNLHMSPHLGWRNIDLEKHFRSKLHIE 214 Query: 190 CFVG--HDIRSLALAE--HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 V + ALAE + D I + + G+ ++ +G++ G +G GEI Sbjct: 215 VPVDYQNTANLSALAESIARQKTGHELSDFIFISQNSAIGSALVLDGKVSSGLHGWAGEI 274 Query: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 HI V + C CG GCL+ A + +R + + + + + Sbjct: 275 AHITVSDEDKPCDCGAVGCLDAYIDKANLLERAGLPANAPW-----------EQLFASLH 323 Query: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 KG++ +E + GR+LG+ ++ INL + IV+ G + + A+ + +AL Sbjct: 324 KGNAQVTETVRLCGRYLGRALSTYINLVDVTTIVLGGVLKKLLPYYEDALRDELTRRALC 383 Query: 366 AFRTNLPVVRSELDHRSAI-GAFALVKRAMLNGI 398 + + + S + S++ GA L+ Sbjct: 384 SNWMEIDLQESIVKEGSSLQGAAWNSLLRFLSAP 417 >UniRef50_A8F699 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F699_THELT Length = 375 Score = 313 bits (803), Expect = 9e-84, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 175/386 (45%), Gaps = 20/386 (5%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ + + R++ + G ISR +++ Q+ L+ +V++I LI G+I+EV + S+ Sbjct: 2 IQKNSEREILRILRRSGHISRSKLSLQTGLSKPAVSEIVSGLISLGVIREVKKGKSSSKG 61 Query: 75 --RAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ-QTLEHALLN 131 R I + + + I + +G + L DL S+V+ T+ L + + Sbjct: 62 GKRPILLEFKPDYRYIIAIDVGGTKLRVALTDLESRVIETRVVSSKGVTRKDDLLNLICK 121 Query: 132 AIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCF 191 I+ F++ +++ I + +PG VD +G ++YMP + N L +++ + Sbjct: 122 NISPFLEE----REKILGIGIGVPGTVDMKNGFVYYMPAFNLRNIELKSMVQKEVDLPTL 177 Query: 192 VGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVE 251 V +D+ AL E + GA++ ++ +L+ + GTGAGII + + G G GEIG++ + Sbjct: 178 VANDVNLNALGEMWKGAARGHKNVLLISLGTGTGAGIILDRHMCNGSRGMAGEIGYMITD 237 Query: 252 PLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLA 311 E+ + FG LE + A+E+++ + + + + + Sbjct: 238 WSREKYNDFPFGNLEKWFSGYALEKKLKEIGENMSLKDFFGRTASSEDL----------- 286 Query: 312 SEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEIT-EADKVLLPAIESCINTQALKAFRTN 370 + ++ HL + AI L +P+ +VI G I ++ I + Sbjct: 287 NNILNEACEHLALAMVNAICLLDPEVVVITGGIGFNQYDKIIEKIMPVFEKTVPAEIFQS 346 Query: 371 LPVVRSELDHRSAI-GAFALVKRAML 395 + +SEL I GA LV++ Sbjct: 347 ISFKKSELGDMGVIVGANYLVQKEFF 372 >UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WP29_ACTMD Length = 410 Score = 313 bits (803), Expect = 9e-84, Method: Composition-based stats. Identities = 95/410 (23%), Positives = 180/410 (43%), Gaps = 26/410 (6%) Query: 1 MTPGGQA--------QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKI 52 MT G + + V+ LN+ V R + P +++Q+A ++ L+ A+V+ + Sbjct: 1 MTSGRRRLLEARTVLSASSDSSVRALNTRRVLRAVMVL-PATQVQLARRTGLSQATVSGV 59 Query: 53 TRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAE 112 +L + G + EVD+ G+R + A+G+ +G + L + ++ + Sbjct: 60 VGRLQQEG-VVEVDEGEGERGKR---VRVAPMRGAAVGIEVGHDRLIVALRRIDNEEVLH 115 Query: 113 E--HYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPH 170 + + + R + + I ++S ++++I + LP VDP G+++ Sbjct: 116 QGGNRLVVGRDDRAWVGEAVRLIDDLLESTGMVAADVVSIGLGLPAAVDPRRGRVNQSVT 175 Query: 171 IQVENW--GLVEALEERF-KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAG 227 E+ EE + V V ++ A E+ +G +D E + V+ G GAG Sbjct: 176 AMKEDLRGNPATWFEEHYPGVPVVVDNEANFAAYGEYTYGVGRDAEVLLFVKASTGIGAG 235 Query: 228 IISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQ 287 ++ G +F GR+G GE+GH+ ++P G C CGN GCLET+ + + + V + Sbjct: 236 LVIGGTVFRGRHGFAGEVGHLTMDPNGLVCRCGNRGCLETLVSGPRLVEEVRQAYRGHRV 295 Query: 288 SRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 T+ + + A D + V++ GR++G +A N+ NP +V+ GE+ EA Sbjct: 296 DL----PMTLAGLIERARAHDPVCVRVLQDAGRNIGLALARVCNIVNPDLVVLGGELGEA 351 Query: 348 DKVLLPAIESCINTQALKAFRTN---LPVVRSELDHRSA-IGAFALVKRA 393 ++ + L + + V SEL + GA A Sbjct: 352 GDLVRKHAARDLERNVLTGMLEHEHPVVVRVSELGLLAGPRGALAFALSN 401 >UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCX5_ACTMD Length = 382 Score = 313 bits (802), Expect = 9e-84, Method: Composition-based stats. Identities = 100/391 (25%), Positives = 168/391 (42%), Gaps = 25/391 (6%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTG-G 73 +++LNSA V I SR +A ++ L A+V+ + ++I L+ E +A +G G Sbjct: 1 MRRLNSALVLDAIASAPGSSRASVATRTGLTKATVSSLVDRMIGAALVVEGAAEARSGPG 60 Query: 74 RRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 RR ++ H +GV +G L DL+ +V R + +L + Sbjct: 61 RRGTALHLSPAGPHGLGVEVGVDYLATCLVDLTGRVRKRWVRDSDNR--ASSPALVLGEV 118 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFK-----V 188 A + R+ + I V +PGLV+ SG + P++ + L + Sbjct: 119 AAAVRIATREDVPVGGIGVAVPGLVESASGVLRVAPNLGWREVDVRGELGRLLGADAGGL 178 Query: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 VG++ ALAE + G + +D + V G GAGI+ + +F G +G GEIGH+ Sbjct: 179 PVQVGNEANLAALAELWHGDA--PQDFVHVSGEIGIGAGIVVDAGLFEGVSGFGGEIGHL 236 Query: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGD 308 V+P G RC CG+ GCLE +A I + + + + D Sbjct: 237 SVDPSGPRCTCGSRGCLERLAGQDEILRAAGAA--------------DVADLLARLDADD 282 Query: 309 SLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFR 368 A + R LG ++ A+NL +V+ G + L P +E+ + + + A Sbjct: 283 REAVAAVRTAARWLGIALSGAVNLLGLPAVVLGGAYARLEPWLRPTLEAELGGRVVSAAW 342 Query: 369 TNLPVVRSELDHRSAI-GAFALVKRAMLNGI 398 + + V S L +A+ GA RA+L Sbjct: 343 SPVAVTASSLGDEAAVRGAATSAVRAILADP 373 >UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID=D2B0X7_STRRD Length = 391 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 80/409 (19%), Positives = 146/409 (35%), Gaps = 50/409 (12%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 Q D ++ N V + + GPI+R +AE + L +V+K+ L+ G++ E Sbjct: 1 MTQAVRHDSMRARNLGVVLGEVRRSGPITRAALAEITGLTKTTVSKMVGDLLGAGMVTEA 60 Query: 66 DQ-QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER--TQ 122 + GR ++ A+G+ + + + DL+ V + R + Sbjct: 61 GALRDGERGRPGTAVSLSGHRVAALGLEINVDYLSACVVDLTLSVRLRRTQAVDNRAASP 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEAL 182 L + +D + + + ++ +PG VD G +H P++ + + + L Sbjct: 121 VETLAHLQELAHRAVDEARSEGLAIAGSTLAVPGPVD--GGLLHAAPNLGWHDVRVGDLL 178 Query: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRI-------- 234 V ++ AL E +FG+ D + V G I Sbjct: 179 ----DFPVAVENEANLAALGELWFGSG--PSDFLHVS------------GEIGVGAGLVV 220 Query: 235 ----FIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV 290 F G G GE+GH+ V P G C CG GCLE A A+ + Sbjct: 221 GGALFRGARGLAGELGHVIVSPDGPTCRCGGRGCLEQYAGQEALLRAAGLDG-------- 272 Query: 291 PLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKV 350 + + + G A E G+ LG + A++L +P +V+ G Sbjct: 273 ------VPELVERLQAGTPGALRACERAGQALGVALTSAVHLMDPGTVVLGGIFAPLFPW 326 Query: 351 LLPAIESCINTQALKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGI 398 + + + + + S L +A +GA V ++ Sbjct: 327 IHGPARETMTARLARMRHAVPELTVSRLGGDAASLGAAGQVIHRIIADP 375 >UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A233_RHILW Length = 321 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 7/302 (2%) Query: 87 HAIGVRLGRHDATITLFDLSSKVLAEEHYPLPE-RTQQTLEHALLNAIAQFIDSYQRKLR 145 AIG+ LG L D ++L P + + + + + K Sbjct: 4 VAIGIDLGGTQVRAALVDEHGRILTRLAEPTDALAGPDRVLAQICGLADRLLAAS--KPA 61 Query: 146 ELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEH 204 ++ + V PG +D +G +P + ++ L L++RF + +D + A+ E Sbjct: 62 SVVGVGVSAPGPLDTVTGVATDIPTLPGFVDFPLKAELQKRFAFPVDLENDAIAAAVGEW 121 Query: 205 YFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGC 264 FG + ++ + V V G G G+IS+GR+ GR G +GH+ V P GE C CGN GC Sbjct: 122 QFGIGKGLDNLVYVTVSTGIGGGVISDGRVVRGRKGMAAHVGHMSVVPNGELCPCGNRGC 181 Query: 265 LETIAANAAIEQRVLNLLKQGYQSRV--PLDDCTIKTICKAANKGDSLASEVIEYVGRHL 322 E + A +R + + + +++ AA GD LA+++++ L Sbjct: 182 FEAYGSGPAFARRAQMRAMESRDTTLGSNGGAIDSRSVFAAARNGDRLANQLVDEEAEIL 241 Query: 323 GKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS 382 G+ I++F+P IV+ G ++ L P I++ I+ A+ AF ++ VV + LD S Sbjct: 242 GRGFTNLIHIFSPDIIVMGGGLSHEFDRLQPGIQAYISQWAMPAF-KDVKVVLAALDQNS 300 Query: 383 AI 384 + Sbjct: 301 GL 302 >UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (NagC/XylR) family n=1 Tax=Vibrio splendidus 12B01 RepID=A3UNW3_VIBSP Length = 405 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 93/405 (22%), Positives = 177/405 (43%), Gaps = 22/405 (5%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 ++D V+ N + + G SR +I++ L A+VT+ + LIE+GLI Sbjct: 1 MRSGLGVSLDDVQNHNKRVILNALHNSGSCSRKEISQLVGLDQATVTRAIKPLIEQGLIV 60 Query: 64 EVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQ 122 E + + GR +I + T++ + VR+ R + +I +DL+ L P+ + + Sbjct: 61 ETGVRKAARGRSSIYLGFNTQHLRIVSVRIQRTNFSIDTYDLNGVSLTNVVKPINTDNSP 120 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGL-VDPDSGKIHYMPHIQVENWGLVEA 181 + L L ++ + + +++ I+V +PG ++ D+ + ++ + Sbjct: 121 EELIEYLTKQVSDVLKE---QECDVLGIAVAMPGPFLEQDNKIMLMTDAKNWQDIDFISH 177 Query: 182 LEERF-KVTCFVGHDIRSLALAEHYFGASQDCED-SILVRVHRGTGAGIISNGRIFIGRN 239 + E+F + GHD + ALA S + V + +G G+G++ G+++ G Sbjct: 178 MREQFPDYPIYAGHDAKLAALAVWRQLQSTYEASVLLYVSLGQGVGSGLVIEGQVYHGSL 237 Query: 240 GNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKT 299 G GEIGH + G +C CGN GCLE ++ A+ +R L + Sbjct: 238 GTAGEIGHTSINFQGPQCKCGNLGCLELYSSTTALVERYKQEA--------SLVSADFEM 289 Query: 300 ICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCI 359 + A + +S A ++Y+ + L + IN NP +VI E+T+ L ++ Sbjct: 290 VVNAFHDRESAAINAVDYLAKCLAHGLVNNINQLNPDLVVIGDELTQLGADFLSRVKEYT 349 Query: 360 NTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLL 404 L +N+ +V E D LV + + ++ LL Sbjct: 350 YRLLLPDLASNIELVLDESDED-------LVHKGNYHNVMSNELL 387 >UniRef50_B9K0Q3 Transcriptional regulator ROK family n=3 Tax=Rhizobiales RepID=B9K0Q3_AGRVS Length = 379 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 150/399 (37%), Gaps = 47/399 (11%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N + + N V I +GP +R IAE+ L +V+ I R+L ++GL+ V + Sbjct: 4 RGTNQESGRPYNRRIVLESIRLHGPTTRGDIAERVGLTVQTVSTIVRELEDQGLLLSVRE 63 Query: 68 QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEH 127 + G ++ HA+G+ L L +L +V+ P Sbjct: 64 KPKGRGIPPSALTINPEGGHAVGIHLTPLGIEAALVNLRGEVVESRQRSAPNAMPDEAFA 123 Query: 128 ALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERF 186 + +A + L+ + LPG D DS + +N + + L + Sbjct: 124 LIGEMVADL--KASSRRGRLLGAGLALPGPFDVDSMSFVGPTTMAGWKNVYIRQRLADAT 181 Query: 187 KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIG 246 + F+ +D+ + AL E +G Q D + G G ++ +G + G GN GEIG Sbjct: 182 GLPAFMENDMAAAALGEQLYGLGQQFSDYFYLFFSVGLGGAMMHDGVVMRGAWGNAGEIG 241 Query: 247 HIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANK 306 HI P GE CHCGN GCLE + A ++ L + + Sbjct: 242 HIAAVPDGELCHCGNCGCLERYLSLDAFKR-------------SGLSEEDWVDVIA---- 284 Query: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG--------EITEADKVLLPAIESC 358 + R NLF+P+ IV+ G + + L +I + Sbjct: 285 ------PIFRSAIR-------TIENLFDPETIVLGGLAPQSLIERLATLGEGLTNSISAR 331 Query: 359 INTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNG 397 N + VV S+ + GA AL +L+ Sbjct: 332 TNRTVPRV------VVASDCQRSALRGAAALAVFGVLSP 364 >UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CVT4_GARVA Length = 379 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 165/393 (41%), Gaps = 36/393 (9%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 +Q + N ++ + +SR + +++L+ AS++ + +++E ++ Sbjct: 15 MTVSQKTIPADARINNRMLIFNYLFPKQILSRAMLVRKTKLSKASISTVVYEMLEDHILV 74 Query: 64 EVDQQAS-TGGRRAISIVTETRNFHAIGVRLG-RHDATITLFDLSSKVLAEEHYPLPERT 121 E Q++ G++ + + ++ I + L + +L +L L ++ Sbjct: 75 ESGQESKIERGKKGTLLEVDANYWNIITIDLSQPCLIQGAVVNLCGDILKRSEISL-YKS 133 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 ++ I++ ++ I + +PG+VD D G++ ++Q EN + E Sbjct: 134 TDANCEKIIEVCKTLINNSN---NHILGIGIAVPGIVD-DEGRVVRSSNLQWENINIKEE 189 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 L + F V HD S LAE +FG ++I +++ G GA I+ N I G N + Sbjct: 190 LIKHFNCPIIVDHDTNSALLAERFFGNG--VPNTIFIQLSLGVGASILINDAIITGINNS 247 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 GEIGHI V+P G C CG GCLET + + +++ + S +D Sbjct: 248 AGEIGHITVDPQGPDCSCGKKGCLETYISAETLHRKM-------FTSNRKPED------- 293 Query: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 ++ G +LGK + INL + +VI G +KV + + E I Sbjct: 294 ------------ILAEAGNYLGKALTTTINLLDLTDVVIYGPSDIVNKVFISSTEKAIQE 341 Query: 362 QALKAFRTNLPVVRSELDHR-SAIGAFALVKRA 393 + + V R ++ + IG V + Sbjct: 342 YGPYSPKHPCTVRRCTCNNDITLIGECISVIQN 374 >UniRef50_A5N1R7 Predicted transcriptional regulator n=2 Tax=Clostridium kluyveri RepID=A5N1R7_CLOK5 Length = 402 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 168/388 (43%), Gaps = 8/388 (2%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 ++ L+ + G +S+ +I+ ++ + ++ + L + +I E STGGRR I Sbjct: 15 EKKIFNLLQKNGRLSKNKISSRTDIKLTTLNYVMEPLEKSKMIVESCIGESTGGRRPILY 74 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFID 138 +F+ IG+ + + + +L ++L +E + + + T ++ I + Sbjct: 75 DININDFYIIGIDISILYTQVVITNLKMEILYKELFNMDDSYTPCETVKKVVEIINRAYA 134 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMPHI---QVENWGLVEALEERFKVTCFVGHD 195 + +L+ I V G +D +G I + + + + LEE+ K V + Sbjct: 135 NLNLSHMKLLGIGVGSVGPLDIKNGIIKNPVDFFADKWTDVPIKKMLEEKLKHPVIVENG 194 Query: 196 IRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE 255 + +AE+++G + E+ G G IS+G + N GH+ ++ GE Sbjct: 195 ANAAVVAEYFYGVGRGIENIAFFNCGIGIRTGTISSGHLIRTINDEEEAFGHMTIDIDGE 254 Query: 256 RCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV--PLDDCTIKTICKAANKGDSLASE 313 +C CGN+GCLE + AI + + +K+G + + P+++ K +C AA GD L+ + Sbjct: 255 KCKCGNYGCLECYSTIKAIIKNISKKIKKGRHTIINKPVEEIDYKDVCLAAEMGDELSID 314 Query: 314 VIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPV 373 +I LG ++ I L +P+ +++ G + K+ ++ Sbjct: 315 IITDAALILGSGLSNYIKLLSPKLVILTGPLIINSKLFYEVCVKSTLKNLNSTKGKSVIF 374 Query: 374 VRSEL--DHRSAIGAFALVKRAMLNGIL 399 R +IGA A+V L + Sbjct: 375 NRCGYFSGDAISIGASAMVIERCLESGI 402 >UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LD35_9FIRM Length = 459 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 102/422 (24%), Positives = 182/422 (43%), Gaps = 34/422 (8%) Query: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 + N KQ N + +LI +RI++++ + L +VT I + I++GL+ Sbjct: 42 MARMTGKNNLTSKQFNRGLLLKLIATQNCRTRIELSKATGLTKMTVTNIVSEFIQQGLVA 101 Query: 64 EVDQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 E ++ + GR I + + IG+ + R L LS + LA E T+ Sbjct: 102 EREEVQTEVCGRNPILLEISGKAPKVIGLLIFRDRIEAVLCTLSMQKLASESIHFDSLTK 161 Query: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEA 181 + L + I + ++ + + I V G VD G I P ++N + EA Sbjct: 162 EQLYAHCFSVIDRLLEK----EKNIFGIGVAAIGPVDIWKGVILNPPRFYGIQNVPVREA 217 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 LE+R+ + F HD S ALAE FG ++ +D + V + G G+GI+S GR++ G Sbjct: 218 LEKRYALPVFFDHDNNSAALAELLFGIGRNVQDFLFVGISNGIGSGIVSGGRVYHSHRGL 277 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSR------------ 289 EIGHI ++ G C CGN GCLE A + +++ + + Sbjct: 278 PPEIGHISIDRRGPLCACGNRGCLELYANTHIVLEKLRAAKGRAFSGERCAGPGDALSAN 337 Query: 290 --VPLDDCTIKTICKAANKGDSLA-----------SEVIEYVGRHLGKTIAIAINLFNPQ 336 + + C+ +G S A E+ E + + + + ++N+ +P+ Sbjct: 338 FCRAEEGASFADFCR--EEGASFADFCRAPQTAETEEIFEEMLQDVSAALVTSVNILHPE 395 Query: 337 KIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS-AIGAFALVKRAML 395 IV+ + + D+ L+ +E +N + + + LPV ++ + IGA M Sbjct: 396 MIVLGHDCIDWDERLVGRLEELVNERKVVHDQRPLPVKKAYFGKEAQLIGAACNAVDQMF 455 Query: 396 NG 397 G Sbjct: 456 RG 457 >UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID=A6WEF3_KINRD Length = 390 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 158/387 (40%), Gaps = 33/387 (8%) Query: 12 VDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD-QQAS 70 + N + V L+ GP+SR +A + L +V++I L+ GL+ E+ + Sbjct: 31 PSQARAHNRSVVLGLLFHEGPVSRADLARATGLTRVTVSEIVGDLLTDGLVAELGLRPEG 90 Query: 71 TGGRRAISIVTETRNFHAIGVRLGR-HDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 G+ A+ + H + V L R A + + DLS V++E + + AL Sbjct: 91 RVGKPAMMVGLRAAEHHVVAVDLQRLPAARVAVLDLSGTVVSETTADVTGLRGEDATAAL 150 Query: 130 LNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVT 189 + I + ++ + + PG+VD +G++ + + L E L V Sbjct: 151 EDLCRAGIAGAP---QRVVGVGIGTPGIVDA-TGRVVESARLGWRSVPLAERLSHALGVG 206 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D + ALAE +G + ++V V +G GAG++ +G + G GEIGH+ Sbjct: 207 VHVANDADTAALAEFTYGEASPSG-FMVVAVGQGVGAGLVLDGHLVRGHRLAAGEIGHLT 265 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 V+P GE C CG GCLETI A A +++ + Sbjct: 266 VDPRGEPCECGRRGCLETIVAPAYLDRTLAGRTPARR----------------------- 302 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRT 369 + G LG +A + + +++++ G D LL A + T L T Sbjct: 303 --RSALRDAGHRLGAVLAPVVAALDLEEVILTGPAELLDGPLLEAARETVQTTCLPTEGT 360 Query: 370 NLPVVRSELDHRSAI-GAFALVKRAML 395 V ++L + GA ALV Sbjct: 361 APQVRMAQLGANGVLQGAAALVLSGEF 387 >UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAB7_DICT6 Length = 375 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 176/390 (45%), Gaps = 31/390 (7%) Query: 6 QAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEV 65 + + + N V ++ + GP SR ++A S+L ++++I +LIE+ ++ E+ Sbjct: 1 MREGRKPEYIGLYNKNLVLEILIKTGPKSRAELARISKLTKTAISEIVDELIEKNILVEI 60 Query: 66 DQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTL 125 + ++ GRR + + + L + + D S KV + +YP+ + Sbjct: 61 GKVETSRGRRPTKLTINPDLK-ILAIDLSGLEGRSGIVDASGKVEEDFYYPIKRK----- 114 Query: 126 EHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEER 185 L I + Y + +IAIS+ +PG+++ +G++ + N+ L E L+ER Sbjct: 115 -EDLFELIDPLLKKY----KNIIAISISVPGIINKYNGEVILSVGLNWRNFLLKEFLKER 169 Query: 186 F-KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGE 244 + + ++ D S L+E +FG + + +G G GI NG I G N GE Sbjct: 170 YPNLPIYIEKDTNSGLLSELWFGEGKKFNILFYLLFEKGIGLGIYYNGNIIEGFNNIEGE 229 Query: 245 IGHIQVEPL-GERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 IGH V E C CGN GCLETIA+ I+++ + ++ K+ Sbjct: 230 IGHTIVNGDIAEICWCGNKGCLETIASFPKIQEKFSDFKL-------------LEESLKS 276 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG--EITE-ADKVLLPAIESCIN 360 N+GD +E + R+LG ++A A+++ P+ I +AG +T + ++ ++ Sbjct: 277 YNQGDKD--PFLEEIFRYLGISLANAVHIIAPEAICVAGNRGMTRNILNLFTEILKKEVD 334 Query: 361 TQALKAFRTNLPVVRSELDHRSAIGAFALV 390 + + + S L + + ++ Sbjct: 335 KYIFEYLKDKIYFYASPLGNDGLLIGAGIL 364 >UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDD5_THET1 Length = 321 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 151/316 (47%), Gaps = 12/316 (3%) Query: 86 FHAIGVRLGRHDATITLFDLSSKVLAEEHYPL-PERTQQTLEHALLNAIAQFIDSYQRKL 144 + IGV LG L + + L +P ++ + +L + + Sbjct: 4 RYVIGVDLGGSRVRAVLANEKGEFLDRCEFPTLADKGLYFVLERILECVRSVSSNAP--- 60 Query: 145 RELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAE 203 + AI V PG ++ G + P++ N L + +EE+ + F+G+D AL E Sbjct: 61 -RIDAIGVGAPGPINSKEGVVSNPPNLPGWVNVPLAKLIEEKTGIPTFLGNDANLAALGE 119 Query: 204 HYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFG 263 +G+ + + I + V G G GII +G++ G NG GE+GH+ V+P G +C CG +G Sbjct: 120 FTYGSGKYVQHLIYITVSTGVGGGIIIDGQLLEGHNGAAGEVGHMVVQPGGPKCSCGGYG 179 Query: 264 CLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKGDSLASEVIEYV 318 LE +++ AI +R + + +D K + +AA KGD LA +++E Sbjct: 180 HLEALSSGTAIAKRAREAASLNKDTIMIELAGSVDKINAKIVDEAAKKGDPLALKLLEQA 239 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 G+ LG + I++FNPQ I I G ++EA ++LL + + F+ +L +V++ L Sbjct: 240 GQWLGYALINLIHIFNPQMISIGGGVSEAGELLLGPARKVVFEGLMPVFKQDLQIVKASL 299 Query: 379 DHRSAI-GAFALVKRA 393 + GA AL + Sbjct: 300 GGDVGLAGAVALALQE 315 >UniRef50_A6DFD9 Probable transcription repressor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFD9_9BACT Length = 320 Score = 310 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 9/314 (2%) Query: 88 AIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLRE 146 +G LG + D +L+ +++ + I D + + Sbjct: 4 ILGFDLGGTKVLAAVLDNDFNILSRVKMKANADLGVKSVYKVICAVIKDACDEAGIDVSD 63 Query: 147 LIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYF 206 L AI PGLV+P +G ++ P++ +N+ L E L + F + + +D+ + E +F Sbjct: 64 LSAIGGCAPGLVEPKTGLVYDTPNLGFKNFPLQEKLSQDFNIPVHIENDVNAGLYGELHF 123 Query: 207 GASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLE 266 GA++ E+ + + G G I+ +G++ G G GE GHI V+P G C CG GCLE Sbjct: 124 GAARGMENVLALSPGTGVGGAIVIDGKLIRGSRGGAGEFGHIIVQPDGPLCGCGQRGCLE 183 Query: 267 TIAANAAIEQRVLNLLKQGY------QSRVPLDDCTIKTICKAANKGDSLASEVIEYVGR 320 I++ A+ Q++L+ +G +++ L I +A N GD +++Y R Sbjct: 184 AISSRTALSQQILSFAVRGRVPLVIDEAKGNLKKVKSGLIARAYNSGDEDVQAIVDYAAR 243 Query: 321 HLGKTIAIAINLFNPQKIVIAGEITEA-DKVLLPAIESCINTQALKAFRTNLPVVRSELD 379 +LG ++ +N FNP+ I++ G + EA + L + +A+ + V+ +EL Sbjct: 244 YLGVGMSNLVNSFNPEAIILGGGLIEALPEPFLKISTKVMREKAMGVNGEKVKVLAAELG 303 Query: 380 HRSAI-GAFALVKR 392 + I G+ L Sbjct: 304 DDAVIKGSAQLAAE 317 >UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGB0_EUBR3 Length = 412 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 85/411 (20%), Positives = 171/411 (41%), Gaps = 26/411 (6%) Query: 6 QAQIG-NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 + G ++D VK N + + +++ + G +SR IA Q L PA+VT + ++E +I E Sbjct: 1 MVKTGISLDSVKNNNKSQILKILQKNGAMSRKDIANQIGLTPAAVTMLCNDMMEAHMILE 60 Query: 65 VDQ--QASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-T 121 + + GR+ + + + + V + D +IT+ ++ VL E Sbjct: 61 KGEMKEQKRAGRKKVLVDINYDFKYIVSVNIEAVDTSITVTNIRGNVLVETKVHTRTDIE 120 Query: 122 QQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 Q L I + + KL +++ I + +PG+VD ++G + I + E Sbjct: 121 PQLFLEELAKEIKLQLWEKELKLSDILGIGICVPGIVDRNNGISIHAYGIWNNQVKIREI 180 Query: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 LE++ + + +++++ A AE +G + + + ++ G G+ I+ + +++ G N Sbjct: 181 LEKQIQCPVILENNVKAFAEAEMLYGVGKYGNNIVFIKWGPGVGSAIVVDNKLYEGNQHN 240 Query: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQ------GYQSRVPLDDC 295 EIGH +EP G +C CG GCLET + A+ R+ + + ++ + Sbjct: 241 AAEIGHYIIEPDGLKCRCGRQGCLETRVSMFALCDRIKEIYSKENTPVLYEETAGDKNLI 300 Query: 296 TIKTICKAANKG--------DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA 347 T + + D SE++ + + + + P ++ G + E Sbjct: 301 TRELLTSWVENEGNGYITRMDKTISEILVGAIERMARVAVNVLTILAPDCTIVFGSMFEN 360 Query: 348 DKVLLPAIESCINTQALKAFRTNLP--VVRSELDHR-SAIGAFALVKRAML 395 +I K + RS L + + IG AL+ Sbjct: 361 -----TSIYKLFIQYCTKYDENYTDKLISRSHLSDKMAYIGGTALIASTYF 406 >UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC4091 Length = 384 Score = 310 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 183/375 (48%), Gaps = 14/375 (3%) Query: 15 VKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGR 74 +++ + I + ISRI +A+ Q P +V I +L+++ I+EV+ +ASTGGR Sbjct: 1 MRKEKEERILECIREQEKISRISLAKLLQWNPTTVGSIVAELLKKSYIQEVEMEASTGGR 60 Query: 75 RAISIVTETR-NFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAI 133 +A + + + +G+ I + + K+ E L + + + Sbjct: 61 KATLLSLKEDMSPSILGISFAPSFLQIGIGSIQGKIFETEKIVLTPL----IIEKIWQFL 116 Query: 134 AQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVG 193 Q ID K +E+ ISVI+ GLV+ + G + PH Q N + + LEER++ FV Sbjct: 117 FQIIDKKLNKWKEIRQISVIISGLVNSEKGVSIFSPHYQWRNIEIKKILEERYQKKVFVE 176 Query: 194 HDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPL 253 +D+R++AL E FG+ + + +++ + G G+ I + +++IG GE+GH+QV Sbjct: 177 NDVRAMALLEKSFGSCKKKRNFVVLNIGDGVGSSIFIDNKLYIGSYSGSGELGHMQVNAK 236 Query: 254 G-ERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRV-----PLDDCTIKTICKAANKG 307 G RC CG GCLE+ +N +I ++ + +K G S + + +I+ A + Sbjct: 237 GLRRCSCGKIGCLESEVSNLSILDKISSQIKLGQYSILRQKLKRDGNLSIEDFLFALGEK 296 Query: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAF 367 D LA ++ E + + + I+L NP+++++ G I +++ + ++ Q++ Sbjct: 297 DLLALQIAEESVEMITRALDAIISLLNPERVILYGSIFQSEYLYREILKKI---QSILIS 353 Query: 368 RTNLPVVRSELDHRS 382 + S + Sbjct: 354 EQGYKISLSNFYKEA 368 >UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJQ5_CATAD Length = 390 Score = 310 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 107/381 (28%), Positives = 177/381 (46%), Gaps = 10/381 (2%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS--TGGRRAI 77 AV L+ + GP+SR QIAE +L+PA++T+ TR+L+ GL+ E + S GGR ++ Sbjct: 14 RTAVLALLARRGPLSRAQIAEMLELSPATITQGTRRLLAEGLLVEEAPRPSAGGGGRPSV 73 Query: 78 SIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFI 137 + + H IG+++ T L + V+ + + + L I I Sbjct: 74 PLSLVPGSAHTIGIQVAHEHVTGVTSRLDATVVHSFRHAFDPASPDAV-ETLTALIRSEI 132 Query: 138 DSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIR 197 + +R+ L + V +PG+V+P++G + + L L E V FV +DI Sbjct: 133 EEIERRGLPLAGVGVAVPGIVEPETGTLSMSVRLGWTGLPLAARLREALGVPVFVDNDIS 192 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 ++ AE +G D D +L + +G G G++ +G + G G GE GH+ V+P G +C Sbjct: 193 AVTAAERLYGPGADEADFLLAAIGQGIGLGMVLDGAPYRGAAGAAGEFGHMPVQPDGPQC 252 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEY 317 CGN GCLE++ + A+ + +S + + AA GD A +++ Sbjct: 253 VCGNRGCLESLVSTEALLRTAHEAGILPAES-------DLDDLGTAARHGDPAAVQLLHN 305 Query: 318 VGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSE 377 LG+ +A +NL P+ ++I GEIT +L + + L A R VR Sbjct: 306 AATLLGRALAGVVNLLGPRSVIIIGEITAIWDLLDDPLHEALLDHLLPAVRDTRIEVRPW 365 Query: 378 LDHRSAIGAFALVKRAMLNGI 398 D A A +V A L Sbjct: 366 HDEVIAASAARVVLAAPLAAP 386 >UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5GK61_9ACTO Length = 402 Score = 310 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 154/380 (40%), Gaps = 7/380 (1%) Query: 20 SAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISI 79 A V LI GPISR+++ + + L +++ I R+LIE G+++E +T G+ + Sbjct: 8 RALVVDLIRSSGPISRVELVKSTGLTQPTISNIVRRLIEDGVVRETGDTVATRGKPRSLL 67 Query: 80 VTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFID 138 V + + IG+ L T + D + P + + AL + Sbjct: 68 VINSHAAYGIGIHLATDALTCVVTDTRGGTVGRLLVAAPPSGDPEAVTEALAGLYRDVVA 127 Query: 139 SYQRKLRELIAISVILPGLVDPDSGKIHYMP-HIQVENWGLVEALEERFKVTCFVGHDIR 197 R + ++V+ PG VD G +P L AL V V D Sbjct: 128 GLGLPARGVAGLAVVGPGPVDVAQGSFLALPGRSPATGLALAPALGGALGVPVLVDSDAS 187 Query: 198 SLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERC 257 + + E + + ++ G G+G++ +G + G + N G++GH V G C Sbjct: 188 AATVGEFWGRQVSRARTFGCLYMNSGIGSGVVLDGALHRGASSNAGKLGHTAVVRGGREC 247 Query: 258 HCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLD---DCTIKTICKAANKGDSLASEV 314 CGN GCLE AA + +R L + R+ D + +AA GD A + Sbjct: 248 PCGNRGCLEQYAAPRVLVERARALPGLARRLRIAEGDPVDRAFDVLARAALYGDEAARAL 307 Query: 315 IEYVGRHLGKTIAIAINLFNPQKIVIAG-EITEADKVLLPAIESCINTQALKAFRTNLPV 373 ++ L + NL++ +V+AG A + + AI + + A + V Sbjct: 308 LDESAELLAEAAVTLTNLWDLDTLVLAGPGFAAAGSLYVSAIRARLAASAFTRGVHEVTV 367 Query: 374 VRSE-LDHRSAIGAFALVKR 392 S +AIG ALV + Sbjct: 368 DLSSNPRDAAAIGGAALVLQ 387 >UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X1U5_OCHA4 Length = 417 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 162/388 (41%), Gaps = 27/388 (6%) Query: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 N + ++ N V ++ ++GP+ R+ IA + L ++ I +L+ L+ ++ + Sbjct: 32 NPERIRDHNRRVVLDVVRRHGPLGRMHIARLTHLTAQAIANIVDELVSENLLMQLGRLKK 91 Query: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 G+ I IGV +G T+ DLS K + P+ + + + L L Sbjct: 92 GRGQPPIQFAVNPEGAMTIGVEMGSTHMVTTVLDLSGKPRTQHVRPIQDVSPERLSTQLR 151 Query: 131 NAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVT 189 + S+ L+ I V++PG D + + L E + Sbjct: 152 KEVDAVKTSFPA---RLLGIGVVMPGPFDIEGMSSVGPTTLPGWSGIDAAAVLSEACGES 208 Query: 190 CFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQ 249 V +D + A+ E FGA + ++ G G G+I +G F G GN GEIGHI Sbjct: 209 VLVENDANAAAVGERLFGAGHAISNFAMIYFGAGIGLGMIQDGAPFRGAFGNAGEIGHIV 268 Query: 250 VEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDS 309 + P G C CG GCLET A+ + +++ ++D + K + Sbjct: 269 ITPNGRSCACGQKGCLETYASLHTLREKLHAA---------GIEDTDFDALEKLHGNRNP 319 Query: 310 LASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEA--DKVL-----LPAIESCINTQ 362 + ++ HL IA+ N+ +P+ I++ G + +A D ++ LP + + Sbjct: 320 VLMGWVQEAADHLAPMIAMIENILDPETIILGGMLPDAIIDDLIWHMGGLPISVASRRAR 379 Query: 363 ALKAFRTNLPVVRSELDH-RSAIGAFAL 389 AL V+R + +A+GA +L Sbjct: 380 ALP------RVIRGQTGQFTAALGAASL 401 >UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G397_GEOUR Length = 328 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 147/313 (46%), Gaps = 7/313 (2%) Query: 88 AIGVRLGRHDATITLFDLSSKVLAEEHYPLPER-TQQTLEHALLNAIAQFIDSYQRKLRE 146 IG+ +G + L D KVL E ++ + IA +E Sbjct: 10 CIGIDVGGTNLRFALVDELGKVLFRERRSTEIHQGKEQFLKRFFSVIASLRTWADSSGKE 69 Query: 147 LIAISVILPGLVDPDSGKIHYMPHI-QVENWGLVEALEERFKVTCFVGHDIRSLALAEHY 205 ++AI +PGL+ + G I+ ++ +E L E + + V +D + A E Sbjct: 70 IVAIGAGVPGLI-SNDGIIYSSVNLLPLEGLNLRELITAAAGLPAIVVNDANASAWGEKC 128 Query: 206 FGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCL 265 +GA + +++ + G G+G++ N +++ G +G GE GH+ VEP G+ C CGN GCL Sbjct: 129 YGAGRSMNSFLMLTLGTGVGSGLVLNDKLWTGCDGVAGEFGHVTVEPDGKPCPCGNHGCL 188 Query: 266 ETIAANAAIEQRVLNLLKQGYQSRV---PLDDCTIKTICKAANKGDSLASEVIEYVGRHL 322 E A+ A+ ++ G + P + + AA+ GD+LA + E GR+L Sbjct: 189 EQYASATALVAEAGEAIQAGGGGALANVPASMLNAEVLADAAHGGDALAKAIFENAGRYL 248 Query: 323 GKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRS 382 G A A+NL N + I++ G + + +++ + I +A + +VR+EL+ + Sbjct: 249 GIASAAAVNLLNLEGIILGGGVAASYDLIVEPMRREILARAFAIPARRVRLVRAELEDDA 308 Query: 383 AI-GAFALVKRAM 394 I GA A+ ++ Sbjct: 309 GILGAAAMALASV 321 >UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Propionibacterium acnes RepID=Q6A638_PROAC Length = 397 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 162/376 (43%), Gaps = 16/376 (4%) Query: 21 AAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAISIV 80 V +++ + ++R +IAE + + ++V+ R L+E +++E STGGRR + Sbjct: 28 QRVIKILRKTPGMTRAEIAESTSMPRSTVSAAVRHLLESRVVEEYACADSTGGRRPTKLR 87 Query: 81 TETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLP-ERTQQTLEHALLNAIAQFIDS 139 +A LG+H A + + ++LA + + E + AL + D Sbjct: 88 VAPAVGNAFVAELGQHHARLAIASREGELLATDDIKINIEIGPEKTIKALAKGWHKLGDE 147 Query: 140 YQRKLRELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSL 199 +++ + +PG VD + + L + V + +D R+ Sbjct: 148 IP---GAVVSAGLAVPGPVDGSGHVVGAARMPGWSGKDIAGMLAQELAVPSVIENDARAA 204 Query: 200 ALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGE-RCH 258 + E + + + I V+ G GAG +S G + G G G+I H++V C Sbjct: 205 TIGE-WNCRGRHRDSCIYVKAGTGIGAGWVSGGVAYRGSRGLAGDITHLRVHTDNPLPCT 263 Query: 259 CGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYV 318 CGN GCLET+A+ AAI +++ R+ T + A N GD A ++ Sbjct: 264 CGNSGCLETVASGAAILRQLG---------RLGSSISTTSQLVTAENSGDPQAVSLVRDA 314 Query: 319 GRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSEL 378 G LG+ ++ +N NP +IV+ G +++ LL + S + + L +L + S Sbjct: 315 GMRLGEVLSNLVNFLNPVRIVLGGSMSQMGS-LLAGVRSELYERCLPMCTEDLVIETSAC 373 Query: 379 DHRSAIGAFALVKRAM 394 + + +++ M Sbjct: 374 GADAPLIGMSILDSHM 389 >UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESH3_9FIRM Length = 400 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 163/394 (41%), Gaps = 12/394 (3%) Query: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67 + N L+K N +Y+LI+ + ISR QIAEQ +L+ +V+ + ++++ + + Sbjct: 2 KKYNQLLIKDNNKKQIYQLIEDFPGISRTQIAEQLKLSKTTVSALVDEMMQEMFVIDEGA 61 Query: 68 QASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 S GR+ S+ + I + + + I L D + ++ Y + Sbjct: 62 SESNRQGRKPNSLTVNNSTNYVIVLNWHKDNLEIALVDSAMNIVLCREYDMKNTG--DAL 119 Query: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYM--PHIQVENWGLVEALEE 184 L +F ++ + ++ + VI+PG++D +I + P N+ + L Sbjct: 120 AELKGYFEEFREAQCVDIH-VMGVCVIVPGMIDEKHDEIISVVLPTESQGNYKI-SRLRS 177 Query: 185 RF-KVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVG 243 + +D A AE FG E+ I + ++ G GA II +G + G +G Sbjct: 178 MLDGYPLAILNDTACFAYAETAFGKLDG-ENYIYININDGVGAAIIHDGHLLSGASGMAT 236 Query: 244 EIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKA 303 + GH V+ G C CGN GCLE A+ + +S + K + Sbjct: 237 QFGHFSVDRNGYPCACGNRGCLENQIGELALPRLFEEFGLDVPKS--SGEKLLFKDLAAL 294 Query: 304 ANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQA 363 D A +++ Y+ + AI LF+P+ ++I G + L ++ + Sbjct: 295 VRAEDEDALKLMSYMAEDFAYALCNAITLFHPELVIIGGIGRKLGDRFLELLKGKMQQFG 354 Query: 364 LKAFRTNLPVVRSELDHRSAI-GAFALVKRAMLN 396 + F +++ VV ++L S + GA Sbjct: 355 FRQFVSDVDVVYTKLGEASVVRGAAKYYINRYFK 388 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.194 0.609 Lambda K H 0.267 0.0595 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,313,705,235 Number of Sequences: 3077464 Number of extensions: 213543080 Number of successful extensions: 672277 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 4603 Number of HSP's successfully gapped in prelim test: 2227 Number of HSP's that attempted gapping in prelim test: 653695 Number of HSP's gapped (non-prelim): 8191 length of query: 406 length of database: 1,040,396,356 effective HSP length: 131 effective length of query: 275 effective length of database: 637,248,572 effective search space: 175243357300 effective search space used: 175243357300 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 96 (41.1 bits)