Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	Y	I	I	I	V	S	H	G	H	E	D	Y	I	K	K	L	L	E	N	L	N	A	D	D	E	H	Y	K	I	I	V	R	D	N	K	D	S	L	L	L	K	Q	I	C	Q	H	Y	A	G	L	D	Y	I	S	G	G	V	Y
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	F	G	H	N	N	N	I	A	V	A	Y	V	K	E	K	Y	R	P	A	D	D	D	Y	I	L	F	L	N	P	D	I	I	M	K	H	D	D	L	L	T	Y	I	K	Y	V	E	S	K	R	Y	A	F	S	T	L	C	L	F	R
Secondary structure
SS confidence
Disorder															?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	E	A	K	S	L	H	D	Y	S	V	R	K	F	P	V	L	S	D	F	I	V	S	F	M	L	G	I	N	K	T	K	I	P	K	E	S	I	Y	S	D	T	V	V	D	W	C	A	G	S	F	M	L	V	R	F	S	D	F	V
Secondary structure
SS confidence
Disorder																																?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	V	N	G	F	D	Q	G	Y	F	M	Y	C	E	D	I	D	L	C	L	R	L	S	L	A	G	V	R	L	H	Y	V	P	A	F	H	A	I	H	Y	A	H	H	D	N	R	S	F	F	S	K	A	F	R	W	H	L	K	S	T
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Sequence		F	R	Y	L	A	R	K	R	I	L	S	N	R	N	F	D	R	I	S	S	V	F	H	P
Secondary structure
SS confidence
Disorder																									?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1xhb chain A domain 2 Region: 1 - 253 Aligned: 253 Modelled: 253 Confidence: 100.0% Identity: 9% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain Phyre2 PDB 2ffu chain A Region: 1 - 261 Aligned: 256 Modelled: 261 Confidence: 100.0% Identity: 9% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Phyre2 PDB 1xhb chain A Region: 2 - 248 Aligned: 247 Modelled: 247 Confidence: 100.0% Identity: 9% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Phyre2 PDB 2d7i chain A Region: 2 - 225 Aligned: 222 Modelled: 224 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ Phyre2 PDB 2z86 chain D Region: 1 - 232 Aligned: 230 Modelled: 232 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp Phyre2 PDB 3f1y chain C Region: 2 - 262 Aligned: 243 Modelled: 246 Confidence: 100.0% Identity: 11% PDB header:transferase Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus Phyre2 PDB 1qg8 chain A Region: 1 - 242 Aligned: 225 Modelled: 226 Confidence: 100.0% Identity: 11% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Spore coat polysaccharide biosynthesis protein SpsA Phyre2 PDB 3bcv chain A Region: 1 - 213 Aligned: 191 Modelled: 194 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:putative glycosyltransferase protein; PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis Phyre2 PDB 3ckv chain A Region: 2 - 242 Aligned: 217 Modelled: 221 Confidence: 100.0% Identity: 9% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein Phyre2 PDB 1omz chain A Region: 2 - 264 Aligned: 237 Modelled: 246 Confidence: 99.9% Identity: 13% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Exostosin Phyre2 PDB 1omx chain B Region: 2 - 243 Aligned: 221 Modelled: 225 Confidence: 99.9% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2) Phyre2 PDB 2qgi chain A Region: 6 - 244 Aligned: 222 Modelled: 239 Confidence: 99.9% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:atp synthase subunits region orf 6; PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus Phyre2 PDB 1pzt chain A Region: 2 - 209 Aligned: 142 Modelled: 142 Confidence: 99.2% Identity: 22% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: beta 1,4 galactosyltransferase (b4GalT1) Phyre2 PDB 2bo4 chain A domain 1 Region: 3 - 212 Aligned: 192 Modelled: 195 Confidence: 99.1% Identity: 9% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: MGS-like Phyre2 PDB 1fo8 chain A Region: 1 - 221 Aligned: 191 Modelled: 195 Confidence: 99.0% Identity: 10% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: N-acetylglucosaminyltransferase I Phyre2 PDB 3lw6 chain A Region: 2 - 209 Aligned: 142 Modelled: 142 Confidence: 98.7% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 Phyre2 PDB 2d0j chain D Region: 1 - 102 Aligned: 100 Modelled: 102 Confidence: 96.6% Identity: 10% PDB header:transferase Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- PDBTitle: crystal structure of human glcat-s apo form Phyre2 PDB 1v82 chain A Region: 1 - 102 Aligned: 101 Modelled: 102 Confidence: 96.5% Identity: 7% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: 1,3-glucuronyltransferase Phyre2 PDB 3cu0 chain A domain 1 Region: 2 - 102 Aligned: 100 Modelled: 101 Confidence: 96.5% Identity: 9% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: 1,3-glucuronyltransferase Phyre2 PDB 1vh3 chain A Region: 3 - 212 Aligned: 200 Modelled: 210 Confidence: 95.9% Identity: 14% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: Cytidylytransferase Phyre2 1 d1xhba2 2 c2ffuA_ 3 c1xhbA_ 4 c2d7iA_ 5 c2z86D_ 6 c3f1yC_ 7 d1qg8a_ 8 c3bcvA_ 9 c3ckvA_ 10 d1omza_ 11 c1omxB_ 12 c2qgiA_ 13 d1pzta_ 14 d2bo4a1 15 d1fo8a_ 16 c3lw6A_ 17 c2d0jD_ 18 d1v82a_ 19 d3cu0a1 20 d1vh3a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1xhba2 100.0 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain 2 c2ffuA_ 100.0 9 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 3 c1xhbA_ 100.0 9 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 4 c2d7iA_ 100.0 14 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ 5 c2z86D_ 100.0 15 PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp 6 c3f1yC_ 100.0 11 PDB header:transferase Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus 7 d1qg8a_ 100.0 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Spore coat polysaccharide biosynthesis protein SpsA 8 c3bcvA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:putative glycosyltransferase protein; PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis 9 c3ckvA_ 100.0 9 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein 10 d1omza_ 99.9 13 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin 11 c1omxB_ 99.9 12 PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2) 12 c2qgiA_ 99.9 14 PDB header:transferase Chain: A: PDB Molecule:atp synthase subunits region orf 6; PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus 13 d1pzta_ 99.2 22 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:beta 1,4 galactosyltransferase (b4GalT1) 14 d2bo4a1 99.1 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:MGS-like 15 d1fo8a_ 99.0 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:N-acetylglucosaminyltransferase I 16 c3lw6A_ 98.7 23 PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 17 c2d0jD_ 96.6 10 PDB header:transferase Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta- PDBTitle: crystal structure of human glcat-s apo form 18 d1v82a_ 96.5 7 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 19 d3cu0a1 96.5 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:1,3-glucuronyltransferase 20 d1vh3a_ 95.9 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 21 c2wvmA_ not modelled 94.5 11 PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii) 22 c3tqdA_ not modelled 90.2 14 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii 23 c2zu8A_ not modelled 89.5 14 PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii 24 c3polA_ not modelled 88.2 13 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii. 25 d1vgwa_ not modelled 86.9 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 26 c3tztB_ not modelled 85.9 10 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 8; PDBTitle: the structure of a protein in glycosyl transferase family 8 from2 anaerococcus prevotii. 27 d1ga8a_ not modelled 78.5 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Galactosyltransferase LgtC 28 c1ga8A_ not modelled 78.5 12 PDB header:transferase Chain: A: PDB Molecule:galactosyl transferase lgtc; PDBTitle: crystal structure of galacosyltransferase lgtc in complex2 with donor and acceptor sugar analogs. 29 d1fxoa_ not modelled 76.4 7 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 30 c2px7A_ not modelled 75.3 12 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8 31 d1vpaa_ not modelled 74.3 8 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 32 d1h5ra_ not modelled 71.1 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 33 d1w77a1 not modelled 68.3 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 34 d1mc3a_ not modelled 67.8 8 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 35 d1lvwa_ not modelled 66.7 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 36 d1iina_ not modelled 63.6 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 37 c3okrA_ not modelled 62.3 8 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 38 c2vshB_ not modelled 60.5 12 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae 39 d1eyra_ not modelled 58.7 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 40 d1vh1a_ not modelled 57.0 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 41 c3okrC_ not modelled 56.2 11 PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 42 d1ll2a_ not modelled 54.9 6 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycogenin 43 c2gamA_ not modelled 51.9 15 PDB header:transferase Chain: A: PDB Molecule:beta-1,6-n-acetylglucosaminyltransferase; PDBTitle: x-ray crystal structure of murine leukocyte-type core 2 b1,2 6-n-acetylglucosaminyltransferase (c2gnt-l) in complex3 with galb1,3galnac 44 c2wawA_ not modelled 49.7 10 PDB header:unknown function Chain: A: PDB Molecule:moba relate protein; PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1 45 c1zcyA_ not modelled 48.2 6 PDB header:transferase Chain: A: PDB Molecule:glycogenin-1; PDBTitle: apo form of a mutant of glycogenin in which asp159 is replaced by ser 46 c2pa4B_ not modelled 44.5 10 PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose 47 c2xwlB_ not modelled 43.3 10 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg 48 c3f1cB_ not modelled 41.6 14 PDB header:transferase Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes 49 d1vica_ not modelled 41.5 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 50 c2we9A_ not modelled 41.2 9 PDB header:unknown function Chain: A: PDB Molecule:moba-related protein; PDBTitle: crystal structure of rv0371c from mycobacterium2 tuberculosis h37rv 51 d1w55a1 not modelled 38.6 13 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 52 c1w57A_ not modelled 37.5 10 PDB header:transferase Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme; PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn 53 c3ecsD_ not modelled 36.5 18 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 54 d1i52a_ not modelled 30.4 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 55 d1h7ea_ not modelled 29.9 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 56 c1zctB_ not modelled 27.4 6 PDB header:transferase Chain: B: PDB Molecule:glycogenin-1; PDBTitle: structure of glycogenin truncated at residue 270 in a2 complex with udp 57 c3a11D_ not modelled 26.9 16 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 58 c3oamD_ not modelled 24.0 14 PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae 59 c3hl3A_ not modelled 23.1 12 PDB header:transferase Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase; PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose. 60 c3ssoE_ not modelled 21.6 10 PDB header:transferase Chain: E: PDB Molecule:methyltransferase; PDBTitle: myce methyltransferase from the mycinamycin biosynthetic pathway in2 complex with mg and sah, crystal form 2 61 d1qwja_ not modelled 19.0 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 62 d1vb5a_ not modelled 16.4 7 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 63 c3rsbB_ not modelled 16.1 10 PDB header:transferase Chain: B: PDB Molecule:adenosylcobinamide-phosphate guanylyltransferase; PDBTitle: structure of the archaeal gtp:adocbi-p guanylyltransferase (coby) from2 methanocaldococcus jannaschii 64 c3brkX_ not modelled 15.6 16 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 65 d3b48a1 not modelled 14.7 18 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 66 c2j0bA_ not modelled 13.6 16 PDB header:transferase Chain: A: PDB Molecule:beta-1,3-n-acetylglucosaminyltransferase manic fringe; PDBTitle: structure of the catalytic domain of mouse manic fringe in2 complex with udp and manganese 67 c3iprC_ not modelled 11.6 19 PDB header:transferase Chain: C: PDB Molecule:pts system, iia component; PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component 68 d1j4aa2 not modelled 11.4 9 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 69 d1zbsa2 not modelled 11.0 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 70 c3d98A_ not modelled 10.8 12 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form 71 c1z9vA_ not modelled 9.9 10 PDB header:unknown function Chain: A: PDB Molecule:conserved hypothetical protein mth0776; PDBTitle: solution structure of mth0776 from methanobacterium2 thermoautotrophicum (strain h) 72 d1g97a2 not modelled 9.4 10 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 73 c2qkxA_ not modelled 9.4 12 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate 74 d1uasa2 not modelled 8.2 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 75 c1uasA_ not modelled 8.2 19 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of rice alpha-galactosidase 76 c2y6pC_ not modelled 8.1 12 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb 77 d1yp2a2 not modelled 8.0 12 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 78 c1t0oA_ not modelled 7.7 19 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: the structure of alpha-galactosidase from trichoderma reesei complexed2 with beta-d-galactose 79 c3pnnA_ not modelled 7.5 7 PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 80 c2f59B_ not modelled 7.5 9 PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 81 c2l82A_ not modelled 7.5 19 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 82 d2dlda2 not modelled 7.5 5 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 83 c3iccA_ not modelled 7.3 4 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 3-oxoacyl-(acyl carrier protein) reductase; PDBTitle: crystal structure of a putative 3-oxoacyl-(acyl carrier protein)2 reductase from bacillus anthracis at 1.87 a resolution 84 d1szna2 not modelled 7.2 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 85 c3jukA_ not modelled 6.9 8 PDB header:transferase Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu); PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose 86 d2aifa1 not modelled 6.6 7 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 87 c3d5nB_ not modelled 6.6 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:q97w15_sulso; PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125. 88 d2d0ob1 not modelled 6.3 6 Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit 89 d1ei7a_ not modelled 6.3 12 Fold:Four-helical up-and-down bundle Superfamily:TMV-like viral coat proteins Family:TMV-like viral coat proteins 90 d1s4na_ not modelled 6.1 6 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycolipid 2-alpha-mannosyltransferase 91 c2qu7B_ not modelled 5.7 6 PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus 92 c3brcA_ not modelled 5.6 5 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum 93 d2oi6a2 not modelled 5.4 11 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 94 c3cc1B_ not modelled 5.4 22 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase; PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution 95 c3qk7C_ not modelled 5.4 3 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 96 c1jyeA_ not modelled 5.3 6 PDB header:transcription Chain: A: PDB Molecule:lactose operon repressor; PDBTitle: structure of a dimeric lac repressor with c-terminal deletion and k84l2 substitution 97 d1jyea_ not modelled 5.3 6 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 98 c2e8bA_ not modelled 5.3 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of the putative protein (aq1419) from aquifex2 aeolicus vf5 99 d1e5ka_ not modelled 5.2 5 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Molybdenum cofactor biosynthesis protein MobA

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0