BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (239 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0A2E9 RNA polymerase sigma factor for flagellar operon... 454 e-127 UniRef50_Q14F25 FliA (Fragment) n=16 Tax=Gammaproteobacteria Rep... 320 3e-86 UniRef50_D0FQ53 RNA polymerase sigma factor n=2 Tax=Erwinia pyri... 252 8e-66 UniRef50_C9YEL0 RNA polymerase sigma factor n=1 Tax=Curvibacter ... 219 8e-56 UniRef50_P29248 RNA polymerase sigma factor for flagellar operon... 215 9e-55 UniRef50_Q47I32 RNA polymerase sigma factor n=1 Tax=Dechloromona... 214 2e-54 UniRef50_A9IKM0 RNA polymerase sigma factor n=9 Tax=Betaproteoba... 209 9e-53 UniRef50_Q6MI54 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 205 1e-51 UniRef50_Q5ZUL1 RNA polymerase sigma factor n=6 Tax=Legionella p... 199 1e-49 UniRef50_B8KP63 RNA polymerase sigma factor n=1 Tax=gamma proteo... 197 2e-49 UniRef50_Q04SE0 RNA polymerase sigma factor n=12 Tax=Bacteria Re... 196 4e-49 UniRef50_A0LC35 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 196 4e-49 UniRef50_A0Z394 RNA polymerase sigma factor n=2 Tax=unclassified... 189 5e-47 UniRef50_B8I3M5 RNA polymerase sigma factor n=3 Tax=Clostridium ... 189 6e-47 UniRef50_Q1NP84 RNA polymerase sigma factor n=1 Tax=delta proteo... 189 9e-47 UniRef50_C0GJF8 RNA polymerase sigma factor n=1 Tax=Dethiobacter... 187 2e-46 UniRef50_UPI0000E0E61A flagellar biosynthesis sigma factor n=2 T... 186 6e-46 UniRef50_B8FK28 RNA polymerase sigma factor n=2 Tax=Proteobacter... 184 2e-45 UniRef50_A5G8Y3 RNA polymerase sigma factor n=9 Tax=Desulfuromon... 184 2e-45 UniRef50_A4FMD9 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 183 4e-45 UniRef50_C8QWD0 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 182 6e-45 UniRef50_A0LI23 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 180 4e-44 UniRef50_C1F998 RNA polymerase sigma factor n=1 Tax=Acidobacteri... 179 7e-44 UniRef50_C6NWP6 RNA polymerase sigma factor for flagellar operon... 179 9e-44 UniRef50_Q2LT13 RNA polymerase sigma factor n=1 Tax=Syntrophus a... 177 2e-43 UniRef50_UPI00016C0EF8 RNA polymerase, sigma 28 subunit, FliA/Wh... 177 3e-43 UniRef50_P17211 RNA polymerase sigma factor whiG n=26 Tax=Bacter... 177 4e-43 UniRef50_UPI0001B5857A putative RNA polymerase sigma factor n=1 ... 176 9e-43 UniRef50_Q0EZ50 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 174 3e-42 UniRef50_D2QYQ7 RNA polymerase, sigma 28 subunit, FliA/WhiG n=7 ... 173 4e-42 UniRef50_C7QA49 RNA polymerase sigma factor n=7 Tax=Actinobacter... 172 9e-42 UniRef50_Q1Q6T7 Strongly similar to RNA polymerase sigma factor ... 171 2e-41 UniRef50_C0ZF72 RNA polymerase sigma factor n=5 Tax=Bacillales R... 170 3e-41 UniRef50_A8MHG6 RNA polymerase sigma factor n=2 Tax=Alkaliphilus... 168 1e-40 UniRef50_Q0AYK8 RNA polymerase sigma factor n=1 Tax=Syntrophomon... 167 2e-40 UniRef50_A4J745 RNA polymerase sigma factor n=1 Tax=Desulfotomac... 167 2e-40 UniRef50_B0K1Q2 RNA polymerase sigma factor n=11 Tax=Thermoanaer... 167 3e-40 UniRef50_D1C190 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 ... 167 3e-40 UniRef50_C1RMF4 RNA polymerase sigma factor n=1 Tax=Cellulomonas... 167 3e-40 UniRef50_A1HN10 RNA polymerase sigma factor n=4 Tax=Veillonellac... 166 5e-40 UniRef50_P10726 RNA polymerase sigma-D factor n=24 Tax=Bacillale... 166 5e-40 UniRef50_C7I0T1 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 ... 166 6e-40 UniRef50_B7ATU0 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 165 1e-39 UniRef50_Q1IR61 RNA polymerase sigma factor n=1 Tax=Candidatus K... 164 2e-39 UniRef50_A1V9R7 RNA polymerase sigma factor n=10 Tax=Desulfovibr... 164 2e-39 UniRef50_B8FTP4 RNA polymerase sigma factor n=2 Tax=Desulfitobac... 163 5e-39 UniRef50_B1I5J3 RNA polymerase sigma factor n=3 Tax=Peptococcace... 161 2e-38 UniRef50_C0QXY0 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 159 8e-38 UniRef50_D1BJ83 RNA polymerase sigma factor n=1 Tax=Sanguibacter... 158 1e-37 UniRef50_A3EPQ0 RNA polymerase sigma factor n=4 Tax=Leptospirill... 158 2e-37 UniRef50_A8F4U9 RNA polymerase, sigma 28 subunit, FliA/WhiG n=8 ... 157 4e-37 UniRef50_Q2RKC7 RNA polymerase sigma factor n=1 Tax=Moorella the... 156 7e-37 UniRef50_C7R3C2 RNA polymerase sigma factor n=1 Tax=Jonesia deni... 155 8e-37 UniRef50_Q1YV82 Flagellar biosynthesis sigma factor FliA n=1 Tax... 152 7e-36 UniRef50_B2A375 RNA polymerase sigma factor n=1 Tax=Natranaerobi... 151 1e-35 UniRef50_C0GLF1 RNA polymerase sigma factor n=1 Tax=Desulfonatro... 150 2e-35 UniRef50_B5JK56 RNA polymerase sigma factor, FliA/WhiG family n=... 150 3e-35 UniRef50_C2KYZ5 RNA polymerase sigma factor n=1 Tax=Oribacterium... 150 5e-35 UniRef50_Q01PP5 RNA polymerase sigma factor n=1 Tax=Candidatus S... 150 5e-35 UniRef50_B9L5B4 RNA polymerase sigma-D factor (Sigma-28) n=1 Tax... 149 6e-35 UniRef50_A9BHZ2 RNA polymerase sigma factor n=1 Tax=Petrotoga mo... 149 7e-35 UniRef50_D1B696 RNA polymerase sigma factor n=2 Tax=Synergistace... 148 2e-34 UniRef50_C0QA49 RNA polymerase sigma factor n=1 Tax=Desulfobacte... 147 4e-34 UniRef50_A4SI42 RNA polymerase sigma factor n=3 Tax=Aeromonas Re... 147 4e-34 UniRef50_Q1AW69 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 146 6e-34 UniRef50_B1ZR25 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 ... 145 8e-34 UniRef50_B8CYP4 RNA polymerase sigma factor n=1 Tax=Halothermoth... 145 9e-34 UniRef50_Q01T87 RNA polymerase sigma factor n=1 Tax=Candidatus S... 145 1e-33 UniRef50_A7HK15 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 ... 145 1e-33 UniRef50_C0C1N2 RNA polymerase sigma factor n=1 Tax=Clostridium ... 145 2e-33 UniRef50_C4ZA81 RNA polymerase sigma factor n=3 Tax=Clostridiale... 144 2e-33 UniRef50_C7LQN4 RNA polymerase sigma factor n=1 Tax=Desulfomicro... 143 4e-33 UniRef50_Q3A5E9 RNA polymerase sigma factor n=4 Tax=Deltaproteob... 143 5e-33 UniRef50_A3DCQ4 RNA polymerase, sigma 28 subunit n=6 Tax=Firmicu... 142 9e-33 UniRef50_B2V6T3 RNA polymerase sigma factor n=6 Tax=Aquificales ... 142 1e-32 UniRef50_A8GYJ9 RNA polymerase sigma factor n=8 Tax=Shewanella R... 141 1e-32 UniRef50_UPI0001C30F67 RNA polymerase, sigma 28 subunit, FliA/Wh... 139 6e-32 UniRef50_Q2T8W7 RNA polymerase sigma factor for flagellar operon... 139 7e-32 UniRef50_C1A543 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 139 1e-31 UniRef50_C9YCL3 RNA polymerase sigma factor n=1 Tax=Curvibacter ... 139 1e-31 UniRef50_B5YIY5 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 137 3e-31 UniRef50_B0P9X1 Putative uncharacterized protein n=1 Tax=Anaerot... 135 1e-30 UniRef50_C9R9X4 RNA polymerase sigma factor n=1 Tax=Ammonifex de... 134 2e-30 UniRef50_Q8EQV7 RNA polymerase sigma factor n=1 Tax=Oceanobacill... 134 2e-30 UniRef50_Q5WFS6 RNA polymerase sigma factor n=1 Tax=Bacillus cla... 133 4e-30 UniRef50_C2ED95 RNA polymerase sigma factor n=5 Tax=Lactobacilla... 133 5e-30 UniRef50_D0MG99 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 ... 132 7e-30 UniRef50_Q3ADC4 RNA polymerase sigma factor for flagellar operon... 132 1e-29 UniRef50_D0LLA7 RNA polymerase sigma factor n=1 Tax=Haliangium o... 131 2e-29 UniRef50_Q254D7 DNA-directed RNA polymerase sigma 28 n=12 Tax=Ch... 131 2e-29 UniRef50_A6F9N5 RNA polymerase sigma factor n=1 Tax=Moritella sp... 130 3e-29 UniRef50_Q2IQQ1 Sigma 28 (Flagella/Sporulation) n=3 Tax=Anaeromy... 130 4e-29 UniRef50_C1SNG1 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG... 128 1e-28 UniRef50_A3V254 RNA polymerase sigma factor n=3 Tax=Rhodobactera... 128 1e-28 UniRef50_Q67K31 RNA polymerase sigma factor related to flagellar... 127 3e-28 UniRef50_A0Q044 RNA polymerase sigma factor n=30 Tax=Clostridium... 127 4e-28 UniRef50_C5EM23 DNA-directed RNA polymerase specialized sigma su... 127 5e-28 UniRef50_B4U959 RNA polymerase sigma factor n=3 Tax=Aquificaceae... 124 3e-27 UniRef50_Q6LW23 RNA polymerase sigma factor n=2 Tax=Vibrionaceae... 123 4e-27 UniRef50_Q03474 RNA polymerase sigma factor for flagellar operon... 123 5e-27 UniRef50_A3PKA6 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 122 7e-27 UniRef50_B0MPC6 Putative uncharacterized protein n=1 Tax=Eubacte... 122 8e-27 UniRef50_A5V5T0 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 ... 122 1e-26 UniRef50_A2SBS3 RNA polymerase sigma factor for flagellar operon... 121 2e-26 UniRef50_A7GZX8 RNA polymerase sigma factor n=20 Tax=Epsilonprot... 121 3e-26 UniRef50_C8UHE6 Predicted RNA polymerase, sigma 28 factor n=8 Ta... 121 3e-26 UniRef50_A4XNP9 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 ... 120 3e-26 UniRef50_C8WBU8 RNA polymerase, sigma 28 subunit, FliA/WhiG n=4 ... 120 5e-26 UniRef50_Q2G3R4 Sigma 28 (Flagella/Sporulation) n=3 Tax=Sphingom... 119 6e-26 UniRef50_Q5DXZ7 Lateral flagellar sigma factor 28 protein (FliA-... 118 1e-25 UniRef50_B1K3B9 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 ... 117 2e-25 UniRef50_C7BYG3 RNA polymerase sigma factor for flagellar operon... 117 3e-25 UniRef50_UPI0001C3122D RNA polymerase, sigma 28 subunit, FliA/Wh... 117 4e-25 UniRef50_C2KTM3 Possible DNA-directed RNA polymerase sigma subun... 112 8e-24 UniRef50_A0LWJ4 RNA polymerase, sigma 28 subunit n=3 Tax=Actinom... 112 1e-23 UniRef50_C2BUJ1 Possible DNA-directed RNA polymerase sigma subun... 110 3e-23 UniRef50_Q1GP15 RNA polymerase, sigma 28 subunit n=1 Tax=Sphingo... 107 2e-22 UniRef50_C7R0L3 RNA polymerase, sigma 28 subunit, FliA/WhiG subf... 106 7e-22 UniRef50_Q2RZF2 RNA polymerase sigma-28 factor n=1 Tax=Salinibac... 105 1e-21 UniRef50_A8U5V7 RNA polymerase sigma factor n=1 Tax=Carnobacteri... 104 2e-21 UniRef50_D2S9N5 RNA polymerase, sigma 28 subunit, FliA/WhiG subf... 104 3e-21 UniRef50_D2SFP2 RNA polymerase, sigma 28 subunit, Sig B/F/G subf... 100 3e-20 UniRef50_A6CQB8 Sigma factor SigD n=1 Tax=Bacillus sp. SG-1 RepI... 96 1e-18 UniRef50_A0YW48 Sigma 32 (RpoH) n=5 Tax=Cyanobacteria RepID=A0YW... 95 2e-18 UniRef50_B2V6R4 RNA polymerase sigma factor n=2 Tax=Sulfurihydro... 95 2e-18 UniRef50_D2KX62 Flagellar biosynthesis sigma factor (Fragment) n... 94 3e-18 UniRef50_A1SDJ3 RNA polymerase sigma factor, FliA/WhiG family n=... 94 3e-18 UniRef50_D0L5V1 RNA polymerase sigma-70 factor, sigma-B/F/G subf... 93 7e-18 UniRef50_A6WEL7 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 93 9e-18 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 91 3e-17 UniRef50_Q1D9L6 RNA polymerase sigma factor, FliA/WhiG/SigD fami... 90 5e-17 UniRef50_C0ZT10 RNA polymerase sigma factor n=3 Tax=Rhodococcus ... 90 6e-17 UniRef50_UPI00016C3B56 RNA polymerase sigma factor for flagellar... 90 7e-17 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 89 9e-17 UniRef50_Q6AGB5 RNA polymerase, sigma factor n=1 Tax=Leifsonia x... 89 1e-16 UniRef50_Q2JWP6 RNA polymerase sigma factor n=25 Tax=Cyanobacter... 89 1e-16 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 88 2e-16 UniRef50_Q5YYK9 Putative sigma factor n=1 Tax=Nocardia farcinica... 87 3e-16 UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 87 4e-16 UniRef50_A4ITQ5 Sigma-B general stress transcription factor n=5 ... 87 6e-16 UniRef50_A4TCX2 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 87 6e-16 UniRef50_A6Q2M3 RNA polymerase sigma factor for flagellar operon... 87 6e-16 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 86 7e-16 UniRef50_UPI0001C31D53 RNA polymerase, sigma 28 subunit, Sig B/F... 85 3e-15 UniRef50_B1ZMJ2 Putative RNA polymerase, sigma 28 subunit, FliA/... 84 3e-15 UniRef50_B1VUR9 RNA polymerase sigma factor n=10 Tax=Streptomyce... 84 5e-15 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 83 6e-15 UniRef50_B4V5M7 RNA polymerase sigma factor n=2 Tax=Streptomyces... 83 7e-15 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 83 8e-15 UniRef50_A4FLE7 RNA polymerase sigma factor n=2 Tax=Saccharopoly... 83 8e-15 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 83 8e-15 UniRef50_B9CP17 RNA polymerase sigma factor n=1 Tax=Atopobium ri... 82 1e-14 UniRef50_UPI0001B54C17 RNA polymerase, sigma 28 subunit, Sig B/F... 82 1e-14 UniRef50_Q8R8A7 RNA polymerase sigma factor n=1 Tax=Thermoanaero... 82 1e-14 UniRef50_A4FHE1 RNA polymerase sigma factor n=4 Tax=Actinomyceta... 82 2e-14 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 82 2e-14 UniRef50_P06574 RNA polymerase sigma-B factor n=246 Tax=Bacillal... 82 2e-14 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 80 6e-14 UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 80 8e-14 UniRef50_P37970 RNA polymerase sigma-F factor n=17 Tax=Streptomy... 79 1e-13 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 79 1e-13 UniRef50_A5KUN7 Flagellar biosynthesis sigma factor n=2 Tax=Vibr... 79 1e-13 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 79 1e-13 UniRef50_Q1AWU9 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 79 1e-13 UniRef50_C6CXS0 RNA polymerase, sigma 28 subunit, FliA/WhiG subf... 79 1e-13 UniRef50_C8W9U8 RNA polymerase sigma factor n=4 Tax=Coriobacteri... 79 2e-13 UniRef50_B8HEI4 RNA polymerase, sigma 28 subunit, FliA/WhiG subf... 79 2e-13 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 79 2e-13 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 78 2e-13 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 78 2e-13 UniRef50_UPI0001C32426 RNA polymerase, sigma 28 subunit, Sig B/F... 78 2e-13 UniRef50_C1BBL7 RNA polymerase sigma factor n=4 Tax=Rhodococcus ... 78 3e-13 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 78 3e-13 UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, s... 77 3e-13 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 77 4e-13 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 77 4e-13 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 77 4e-13 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 77 4e-13 UniRef50_C4RGL0 RNA polymerase sigma factor n=3 Tax=Micromonospo... 77 5e-13 UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subf... 77 6e-13 UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivi... 77 6e-13 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 77 6e-13 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 77 6e-13 UniRef50_Q1AWA7 RNA polymerase, sigma 28 subunit n=1 Tax=Rubroba... 77 7e-13 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 77 7e-13 UniRef50_C0JS04 RNA polymerase sigma factor n=2 Tax=Streptomyces... 77 7e-13 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 77 7e-13 UniRef50_Q9RIS5 RNA polymerase sigma factor n=57 Tax=Streptomyce... 76 8e-13 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 76 8e-13 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 76 9e-13 UniRef50_B1VLU0 RNA polymerase sigma factor n=18 Tax=Bacteria Re... 76 1e-12 UniRef50_C1DW20 RNA polymerase sigma factor for flagellar operon... 75 1e-12 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 75 1e-12 UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacter... 75 1e-12 UniRef50_C0GDZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter... 75 2e-12 UniRef50_A4E6Q4 RNA polymerase sigma factor n=1 Tax=Collinsella ... 75 2e-12 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 75 2e-12 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 75 2e-12 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 75 3e-12 UniRef50_B5GUA2 RNA polymerase sigma factor n=1 Tax=Streptomyces... 75 3e-12 UniRef50_P77996 RNA polymerase sigma factor n=1 Tax=Thermoanaero... 75 3e-12 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 74 3e-12 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 74 3e-12 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 74 3e-12 UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 74 3e-12 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 74 3e-12 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 74 3e-12 UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroi... 74 3e-12 UniRef50_Q7NH69 Glr2668 protein n=1 Tax=Gloeobacter violaceus Re... 74 4e-12 UniRef50_Q47Q97 RNA polymerase sigma factor n=2 Tax=Thermobifida... 74 4e-12 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 74 5e-12 UniRef50_B1X0P5 Group 3 sigma-70 RNA polymerase sigma factor J n... 74 6e-12 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 74 6e-12 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 74 6e-12 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 73 7e-12 UniRef50_A1T0J9 Predicted sigma-28 (Sigma F) factor n=1 Tax=Psyc... 73 7e-12 UniRef50_A6TQA4 RNA polymerase sigma factor n=61 Tax=Clostridia ... 73 7e-12 UniRef50_B9YFM7 RNA polymerase sigma factor n=1 Tax='Nostoc azol... 73 7e-12 UniRef50_C4DVF5 RNA polymerase sigma factor, sigma-70 family n=1... 73 8e-12 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 73 9e-12 UniRef50_UPI0001C321C7 RNA polymerase, sigma 28 subunit, Sig B/F... 73 9e-12 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 73 9e-12 UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 73 1e-11 UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily... 73 1e-11 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 72 1e-11 UniRef50_P07860 RNA polymerase sigma-F factor n=127 Tax=Bacteria... 72 1e-11 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 72 1e-11 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 72 2e-11 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 72 2e-11 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 72 2e-11 UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 72 2e-11 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 72 2e-11 UniRef50_B0N2H4 RNA polymerase sigma factor n=4 Tax=Bacteria Rep... 72 2e-11 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 72 2e-11 UniRef50_UPI0001C31B67 RNA polymerase, sigma 28 subunit, Sig B/F... 72 2e-11 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 72 2e-11 UniRef50_B9YC99 RNA polymerase sigma factor n=1 Tax=Holdemania f... 72 2e-11 UniRef50_D2PPQ2 RNA polymerase, sigma 28 subunit, FliA/WhiG subf... 72 2e-11 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 72 2e-11 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 71 2e-11 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 71 3e-11 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 71 3e-11 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 71 3e-11 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 71 3e-11 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 71 3e-11 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 71 3e-11 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 71 3e-11 UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1... 71 3e-11 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 71 3e-11 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 71 3e-11 >UniRef50_P0A2E9 RNA polymerase sigma factor for flagellar operon n=246 Tax=cellular organisms RepID=FLIA_SALTI Length = 239 Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust. Identities = 224/239 (93%), Positives = 236/239 (98%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAV+RYD Sbjct: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYD 60 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQA+GQLEQELGRNATETEV Sbjct: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEV 120 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 AERLGI +A+YRQMLLDTNNSQLFSYDEWREEHGDSIELVT++HQ+ENPL QLL+ +LRQ Sbjct: 121 AERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQ 180 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 RVM+AIE+LPERE+LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL Sbjct: 181 RVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 >UniRef50_Q14F25 FliA (Fragment) n=16 Tax=Gammaproteobacteria RepID=Q14F25_ECOLX Length = 157 Score = 320 bits (820), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 157/157 (100%), Positives = 157/157 (100%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY Sbjct: 1 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 60 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD Sbjct: 61 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 120 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE 167 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE Sbjct: 121 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE 157 >UniRef50_D0FQ53 RNA polymerase sigma factor n=2 Tax=Erwinia pyrifoliae RepID=D0FQ53_ERWPY Length = 243 Score = 252 bits (643), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 120/239 (50%), Positives = 171/239 (71%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 M+ +YT G+ DK LW +Y +VR EALRLQ RLPASVELDDL+QAG +G L+A++ +D Sbjct: 1 MSGIYTPGGIEDKTILWGKYNHIVRQEALRLQKRLPASVELDDLIQAGSLGFLSAIDHFD 60 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 +G + + QRIR A++DELR RDWVPR VR++AREV I QLEQ G A+E ++ Sbjct: 61 PTKGVTLSAFLAQRIRWALMDELRERDWVPRRVRKHAREVTAVIQQLEQNKGGEASEADI 120 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 A +G+ + + +QML DTN+SQ++S DE +E+ DS E + + ++ NP+ Q + NL Sbjct: 121 ATEMGVSVGELQQMLADTNSSQIYSLDELQEQFADSYETIDEGNEALNPVHQAVQENLVG 180 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 ++ E I +PERE+ +L LYYQ++LN++EIGAVL + E+RVSQLHS AIKR+R ++ L Sbjct: 181 KIAEHISVIPEREQRILQLYYQQDLNMREIGAVLSLTETRVSQLHSLAIKRIRARMDAL 239 >UniRef50_C9YEL0 RNA polymerase sigma factor n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YEL0_9BURK Length = 273 Score = 219 bits (557), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 113/237 (47%), Positives = 163/237 (68%), Gaps = 6/237 (2%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 +YTA+G +D+ +L ++Y PLVR A + +LP SVE+DDL+Q G IGL +A+ RY+A Q Sbjct: 36 MYTAKGQLDRSALIKQYQPLVRRLAHHMMAKLPPSVEVDDLIQVGLIGLSDALSRYEASQ 95 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F T+A QRIRGAMLDELR DW+ R R++ +E+ A+ +LE +LGR+ E+E+A Sbjct: 96 GVQFETFATQRIRGAMLDELRENDWMSRGSRKSQKEIETALRKLEHKLGRSPAESEIATE 155 Query: 124 LGIDIADYRQMLLDTNNSQL-FSYDEWREEHGDSIELVTDDH---QRENPLQQLLDSNLR 179 LG+ ++DY+ +L +QL + D R D L D H Q +PL L D LR Sbjct: 156 LGMSLSDYQSLLGKVRGTQLVYLEDMARRNEDDDTYL--DRHVADQDADPLNMLRDQRLR 213 Query: 180 QRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 Q +++AI+ LPERE+ ++++YY++++NLKEI AVL+V ESRV QLHSQ+I RLR K+ Sbjct: 214 QSLVDAIKCLPEREQYIMSMYYEQDMNLKEIAAVLDVTESRVCQLHSQSIARLRAKM 270 >UniRef50_P29248 RNA polymerase sigma factor for flagellar operon n=153 Tax=Gammaproteobacteria RepID=FLIA_PSEAE Length = 247 Score = 215 bits (548), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 121/225 (53%), Positives = 148/225 (65%), Gaps = 7/225 (3%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L QRY PLV+ A L RLPASV+++DL+QAG IGLL A ++YDA +G +F TYA RI Sbjct: 22 LIQRYAPLVKRIAYHLLGRLPASVQVEDLMQAGMIGLLEAAKKYDAGKGASFETYAGIRI 81 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGAMLDE+R DW PRSV RN R V AI +E GR+A + EVA L + + DY +L Sbjct: 82 RGAMLDEVRKGDWAPRSVHRNTRMVTDAIRAIEARTGRDAKDHEVAAELQLSLEDYYGIL 141 Query: 136 LDTNNSQLFSYDEWRE--EHGDSIELVTDDHQREN-PLQQLLDSNLRQRVMEAIETLPER 192 DT S+L+S+D+ + EHG L D N P+ LLD + + +AI LPER Sbjct: 142 SDTQGSRLYSFDDLLQDGEHG----LPEDTSLSHNEPIHGLLDERFQAALADAIAKLPER 197 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 E+LVL LYY EELNLKEIG VL V ESRVSQLHSQ RLR +L Sbjct: 198 ERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRARLA 242 >UniRef50_Q47I32 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47I32_DECAR Length = 248 Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 6/236 (2%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 +YTA G D+ L QR+VPLV+ A L RLP SV+ DDL+Q G IGLL+A++R+ Sbjct: 1 MYTAAGQPDREQLVQRFVPLVKRIAYHLMARLPPSVQFDDLVQNGMIGLLDAIDRFQEGF 60 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F TYA QRIRGAMLD LR DW+PR++RR R + AI QLE E GR +E E+AE Sbjct: 61 GAQFETYATQRIRGAMLDGLRENDWLPRNLRRELRRIETAINQLEHEHGRVPSEKELAEA 120 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQREN---PLQQLLDSNLRQ 180 LG+ +ADY++ L D QL +D+ G+ E + H +N P L D +++ Sbjct: 121 LGMSLADYQKTLQDARGHQLVYFDDL---AGEGDEGFLERHFTDNAADPAAILEDKSVKA 177 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 ++ AI LPEREK+++ LYY+++LNL+EIG V+ V ESRV QLH+QAI RLR+++ Sbjct: 178 TLITAIGELPEREKMMMALYYEQDLNLREIGEVMGVTESRVCQLHTQAIARLRSQI 233 >UniRef50_A9IKM0 RNA polymerase sigma factor n=9 Tax=Betaproteobacteria RepID=A9IKM0_BORPD Length = 246 Score = 209 bits (531), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 117/228 (51%), Positives = 148/228 (64%), Gaps = 19/228 (8%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 RY PLVR AL+L RLPASV+LDDL+QAG IGLL+A RY F TYA RIRGA Sbjct: 10 RYAPLVRKLALQLLARLPASVQLDDLIQAGMIGLLDAARRYQETPDAQFETYATARIRGA 69 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 MLDELRS+DW+PRSVR + + AI + E EL R +E+E+A+ L + + +Y+ ML D Sbjct: 70 MLDELRSQDWLPRSVRSKGKRIEAAIQRKEHELMRPPSESEIADELELPLDEYQAMLNDA 129 Query: 139 NNSQLFSYDE----------WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 Q+ YD+ WR+ DS +PL LL +LR+ ++ AIET Sbjct: 130 RGIQILHYDDIGSNDPDERGWRDVPADS---------GGDPLDALLTGDLRRALVNAIET 180 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LPEREKLVL+L Y++ LNLKEIGAVLEV E+RV QL SQA R+R +L Sbjct: 181 LPEREKLVLSLCYEQGLNLKEIGAVLEVTEARVCQLRSQATARIRARL 228 >UniRef50_Q6MI54 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI54_BDEBA Length = 261 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 105/228 (46%), Positives = 153/228 (67%), Gaps = 3/228 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L + Y PL++ A ++ VRLP+++ELDDL+ AG IGL++A+E+YD+ + F TYA Sbjct: 23 KDDLIREYAPLIKFIAQKIAVRLPSNIELDDLISAGVIGLMDAIEKYDSTRDNKFKTYAE 82 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+LDELR++DWVPRS+R A+ + + + QLE +LGR ++ EVA+ L + I ++ Sbjct: 83 FRIRGAILDELRAQDWVPRSIRDKAKLLDKTMVQLEADLGRTPSDEEVAKALNVSIDEFH 142 Query: 133 QMLLDTNNSQLFSYDE---WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 ++ L D+ + SI + + + +P QL N+++ V +AIE L Sbjct: 143 DLVNQVRPVSLLPIDQATSFSNTDKKSIMDILEGSRTNSPFNQLNVKNIKEVVAQAIEEL 202 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 PER++LVL+LYY E+LNLKEIG VL V ESRVSQLH+QA+ RLR KL Sbjct: 203 PERQRLVLSLYYYEDLNLKEIGQVLRVTESRVSQLHAQAVARLRAKLA 250 >UniRef50_Q5ZUL1 RNA polymerase sigma factor n=6 Tax=Legionella pneumophila RepID=Q5ZUL1_LEGPH Length = 262 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 104/229 (45%), Positives = 152/229 (66%), Gaps = 16/229 (6%) Query: 15 SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQR 74 +L + + LV+ A L RLP SV+LDDL+Q+G +GLL A YD+ +G +F TYA R Sbjct: 41 ALVKTHATLVKRIAHHLLGRLPQSVQLDDLIQSGMLGLLEAARHYDSSKGASFETYAGIR 100 Query: 75 IRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 IRG MLDE+R DWVPRSV RN+R ++ A+ LE +LGR A + E+AE LG+ + DY M Sbjct: 101 IRGHMLDEVRRNDWVPRSVYRNSRMISDAVRILEHKLGREAKDNEIAEELGVSLDDYHDM 160 Query: 135 LLDTNNSQLFSYDEWREEHGDSIELVTDD-------HQRENPLQQLLDSNLRQRVMEAIE 187 L D+ +S L+ +D+ VTDD + P + ++ S++ R+ + I+ Sbjct: 161 LQDSISSHLYGFDDLG---------VTDDVLFDHEGNGSTEPHRNVMRSDMMNRLTQVID 211 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +LP +E+LVL+LYY+++LNLKEIG +LEV ESR+SQ+ SQA R+R++L Sbjct: 212 SLPRKERLVLSLYYEQDLNLKEIGEILEVSESRISQILSQATHRIRSRL 260 >UniRef50_B8KP63 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KP63_9GAMM Length = 243 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 150/235 (63%), Gaps = 7/235 (2%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 S Y V +L + Y+PLV+ LRL +LPA +ELDDL+Q G IGLL A E YDA Sbjct: 12 SAYAEPVVSSADALVREYLPLVKKIGLRLAAKLPAEIELDDLMQVGLIGLLRARESYDAA 71 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 QG +F+TYA RI+GAMLDE+RS DW+PRSV+ R+V++AI + + LGR A + E+A Sbjct: 72 QGASFSTYAGIRIKGAMLDEIRSHDWLPRSVQSQLRQVSEAIDRADARLGRPANDAEIAG 131 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 L + + +Y+Q+ +++ + DS+E T PL ++ + R+ + Sbjct: 132 ELDMPLDEYQQLSGQLACARMTHIE-------DSVEAETAVLNTHTPLDEVGEEGFREAL 184 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 E++ LPE+E+L+++LYY E LNLKEIGAVL V ESRVSQLH QA+ RLR L Sbjct: 185 AESVTQLPEKERLMMSLYYSEGLNLKEIGAVLGVSESRVSQLHGQALARLRVTLA 239 >UniRef50_Q04SE0 RNA polymerase sigma factor n=12 Tax=Bacteria RepID=Q04SE0_LEPBJ Length = 266 Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 102/230 (44%), Positives = 153/230 (66%), Gaps = 8/230 (3%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L ++Y PLV+H A R+ + +P +VE DDL+ G GLL+A+E++D + F TYA+ RI Sbjct: 32 LVEKYSPLVKHVAGRIAIGMPQNVEFDDLVSYGVFGLLDAIEKFDPDRLIKFKTYAMTRI 91 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RG++ DELRS DW+PRS+R+ A+++ Q IG LE + G+ + +A+ LGI + +Y +L Sbjct: 92 RGSIFDELRSIDWIPRSIRQKAKQLEQIIGMLENKEGQQVDDDAIAKELGISMEEYNSLL 151 Query: 136 LDTNNSQLFSY-DEWREEHGDSIELVTDDHQRENPLQQLLDS-----NLRQRVMEAIETL 189 + + L S D W GD + V+ E+P+ D+ ++ ++EAI+TL Sbjct: 152 TKISGTSLVSLNDIWF--LGDENDEVSFMETLESPMNMNPDTIIEKEEIKNVIVEAIKTL 209 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 PE+EK V+ LYY E+L LKEIG VLEV ESR+SQLH++A+ RLR+KLGK+ Sbjct: 210 PEKEKKVIVLYYYEDLTLKEIGEVLEVTESRISQLHTRAVSRLRSKLGKV 259 >UniRef50_A0LC35 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LC35_MAGSM Length = 260 Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 106/243 (43%), Positives = 161/243 (66%), Gaps = 7/243 (2%) Query: 3 SLYTAEG--VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 +L TAE + + + +Y PLVR+ A R+ ++LP SV+LDDL Q G +GL++AV ++D Sbjct: 14 ALSTAEAWKSLSREEIILKYAPLVRYVAGRISMKLPQSVDLDDLYQVGVMGLIDAVSKFD 73 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 +G F TYA RIRGA+LDELR+ DWVPR +R+NA ++ +A QLE + GR A + EV Sbjct: 74 PDRGIKFQTYAEFRIRGAILDELRAIDWVPRQLRQNASQMQEAYNQLEAKFGRPAEDVEV 133 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWR----EEHGDSIELVTDDHQRENPLQQLLDS 176 AE LGI + +Y + + + S+++ R +E D +E++ D ++P++ + Sbjct: 134 AEHLGISLNEYHEQIDQVRGISIVSFEDIRPNNDDEEWDVLEVLADP-SVQDPVEAIGLM 192 Query: 177 NLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LR + +AIETLPE+E+LV+TLYY EEL + EIG VL + ESR+SQLHS+A R+R ++ Sbjct: 193 ELRHAMADAIETLPEKERLVVTLYYFEELTMSEIGEVLGLTESRISQLHSKAALRMRARI 252 Query: 237 GKL 239 + Sbjct: 253 KRF 255 >UniRef50_A0Z394 RNA polymerase sigma factor n=2 Tax=unclassified Gammaproteobacteria RepID=A0Z394_9GAMM Length = 237 Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 108/228 (47%), Positives = 152/228 (66%), Gaps = 11/228 (4%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G +L + ++PLV+ A +L VRLPA +E+DDL+Q G IGLL A + + A G F+ Sbjct: 17 GASQGDALVRAHLPLVKRIAQQLLVRLPAHIEMDDLIQVGLIGLLKASDDHQADSGAQFS 76 Query: 69 TYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 TYA RIRGAMLDELRSRDW+PRSV+R+ VA AI + EQ +GR AT+ E+A++L +D+ Sbjct: 77 TYAAIRIRGAMLDELRSRDWLPRSVQRDLGRVAAAIERAEQRVGRPATDQEIADQLEMDL 136 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 Y+Q+ + +++ +E +++ T + + + DS R+ V+EAI Sbjct: 137 DSYQQLSGELACARIGQLEE--------LDVPT---EVDATTSIVFDSARREAVVEAIGR 185 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LPE+E L+L+LYY E LNLKEIG VL V ESRVSQ+H QA+ RLR+KL Sbjct: 186 LPEKEGLMLSLYYTEGLNLKEIGMVLNVSESRVSQIHGQAVARLRSKL 233 >UniRef50_B8I3M5 RNA polymerase sigma factor n=3 Tax=Clostridium RepID=B8I3M5_CLOCE Length = 254 Score = 189 bits (481), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 147/224 (65%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L +Y L+++ A RL + ++VE DDL+ G GL++A+E+YD +G F TYA Sbjct: 22 KEKLIIQYAYLIKYVAGRLSIYFGSNVEFDDLVGYGAFGLIDAIEKYDLAKGVKFETYAS 81 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRG+++D +R DWVPRS+R+ +E+ + ++E E G AT+ EVAE++G+ ++D+ Sbjct: 82 LRIRGSIIDSIRDMDWVPRSLRQKNKELEKVYVEIENEKGHTATDKEVAEKMGLSMSDFY 141 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 ++L D N S + S DE+ E++ + + + + P L + ++Q + + I+ LPE+ Sbjct: 142 KLLNDVNVSSMMSLDEFMEQNYERGLEIFSESTEDKPEASLEFNEMKQLLADCIDKLPEK 201 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 EK V+T YY EEL LKEI A++ V ESR+SQLH++A+ R++ KL Sbjct: 202 EKAVITFYYFEELTLKEISAIMNVTESRISQLHTKALLRMKGKL 245 >UniRef50_Q1NP84 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NP84_9DELT Length = 256 Score = 189 bits (479), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 101/225 (44%), Positives = 139/225 (61%), Gaps = 9/225 (4%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PL+++ A RL RLP V +DDL+ G +GL++A+ ++D + F TYA RI+GAM Sbjct: 31 YTPLIKYIASRLASRLPPQVAVDDLISCGIVGLIDAINKFDPAKNVQFKTYAEFRIKGAM 90 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDELR+ DWVPRSVRR E+ + G+LE +LGR + E A LGI++AD+ ++L +T Sbjct: 91 LDELRALDWVPRSVRRKITELEKISGELESKLGRPPDDEETAAALGIELADFHRLLDETK 150 Query: 140 NSQLFSYDEWREEHGDSIE------LVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 + D R + D IE DD ++P L R + +AI LPE+E Sbjct: 151 SVTFLDIDYLRSKVPDEIEGDVGEIFARDD---KDPFTALNLGETRNLLAKAIGELPEKE 207 Query: 194 KLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 KL + LYY EEL +KEIG VL ESR+SQ+HS+A+ RLR KL K Sbjct: 208 KLTVALYYHEELTMKEIGEVLGYTESRISQMHSKAMLRLRAKLKK 252 >UniRef50_C0GJF8 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF8_9FIRM Length = 239 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/224 (47%), Positives = 144/224 (64%), Gaps = 6/224 (2%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + +L ++Y+PLVR A RL + LPA V DDLLQAG +GLL A++R+D +G F ++A Sbjct: 19 QETLVEKYLPLVRLHAGRLALGLPAHVNRDDLLQAGMLGLLEALQRFDPTRGVKFESFAA 78 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGAMLDELR WVPRSV R RE+ +A+ +L +LGR E E+AE++GI I R Sbjct: 79 LRIRGAMLDELRRLCWVPRSVVREMREMDRAVQELATQLGREPAEEEIAEKMGITIPQLR 138 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 ++ N+S L S ++ + + D L +L+ + RQR+ EAI LPER Sbjct: 139 KITGMINSSSLLSLED------TLLAVPAVDGPEVEALDRLIAAEDRQRLAEAIGQLPER 192 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + +L LYYQE+L LKE+G VL V ESRV QLH++ I RLRT L Sbjct: 193 HQQLLALYYQEDLTLKEVGLVLGVTESRVCQLHARIIARLRTAL 236 >UniRef50_UPI0000E0E61A flagellar biosynthesis sigma factor n=2 Tax=Proteobacteria RepID=UPI0000E0E61A Length = 243 Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 98/239 (41%), Positives = 157/239 (65%), Gaps = 12/239 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 N ++E +++KH++ LV+ A L RLP ++ +DDL+QAG +GLL A + ++ Sbjct: 8 CNQSLSSEELVEKHTI------LVKRIAHHLLARLPPNILVDDLIQAGMLGLLEAAKNFN 61 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 + +G +F T+A RIRG+MLD++R DW PRSV +N+R + QAI +E E+ +A ++++ Sbjct: 62 STKGASFETFAGIRIRGSMLDDIRKGDWTPRSVHKNSRAITQAISSVENEMNSDAKDSDI 121 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV-TDDHQREN-PLQQLLDSNL 178 A+RLGI++ Y +ML + N +L E+ G S +++ T D + N P +L+ Sbjct: 122 AKRLGIELPQYHKMLNEVNIGKLVGI----EDLGISEDVIATPDFKSTNTPYDELVHGCF 177 Query: 179 RQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 ++ + +AI +LPERE +VL+LYY E+L+L+EIG L V ESRVSQ+HSQA +L+ KL Sbjct: 178 QKALAKAIVSLPEREAIVLSLYYDEDLSLREIGQALNVSESRVSQIHSQAKSKLKIKLS 236 >UniRef50_B8FK28 RNA polymerase sigma factor n=2 Tax=Proteobacteria RepID=B8FK28_DESAA Length = 252 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/228 (42%), Positives = 149/228 (65%), Gaps = 10/228 (4%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L +Y L + A RL +RLP SV +DDL+ AG +GLL+A+++YD +G F TYA RI Sbjct: 21 LITKYAYLAKLCAHRLAMRLPPSVNVDDLISAGIMGLLDALDKYDEGRGVKFRTYAEFRI 80 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGAMLDELR+ DWVPRSVR+ +E+ QA+ ++E+ R A E+A LG+D+ Y+ ML Sbjct: 81 RGAMLDELRAMDWVPRSVRKKVQEIEQAVNRVEKRESRPADAEEIANELGVDMDTYQNML 140 Query: 136 LDTNNSQLFSYDE--WREEHGDS-----IELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 +L S DE W ++ ++L+ D+ NP + L+DS ++ + ++I + Sbjct: 141 SKAGGIELVSLDEPLWSNDNTKDGRRTHVDLLEDN---ANPDRDLMDSEFKKILAQSISS 197 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 L +E+ +L+LYYQ+EL LKE+G V+ + ESR+ Q+H+Q + +LR+KL Sbjct: 198 LTPKEQQILSLYYQDELTLKEVGEVMGLTESRICQIHTQCMIKLRSKL 245 >UniRef50_A5G8Y3 RNA polymerase sigma factor n=9 Tax=Desulfuromonadales RepID=A5G8Y3_GEOUR Length = 251 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 100/230 (43%), Positives = 147/230 (63%), Gaps = 3/230 (1%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + D+ L ++PLV+ R+ LP ++ DDL A IGL++A ER+D +G F T Sbjct: 17 IPDRDELVVSHLPLVKFLVDRIASALPPHLDRDDLRSAAVIGLISAAERFDPSRGVMFKT 76 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 +A QRIRG ++DELRS+DW+ RS+R + + + LEQ LGRN T EVA +G+++ Sbjct: 77 FAEQRIRGTIMDELRSQDWLTRSLRDKFKRLEREFSCLEQRLGRNPTSEEVAAAMGLELE 136 Query: 130 DYRQMLLDTNNSQLFSYDE-WREEHGDSIEL--VTDDHQRENPLQQLLDSNLRQRVMEAI 186 Y +L + + S D+ W +E G + L V +D E+P QL+ + + EAI Sbjct: 137 GYFHLLEEIHFLSFVSLDDAWMDEDGSPLGLLDVLEDKGVESPQNQLIARQTVENLAEAI 196 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + LPE+E++V+TLYY EELNLKEIG+VL + ESR+SQLHSQA+ RLR ++ Sbjct: 197 DGLPEKERIVITLYYYEELNLKEIGSVLSLTESRISQLHSQALLRLRGRM 246 >UniRef50_A4FMD9 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=A4FMD9_SACEN Length = 311 Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 96/219 (43%), Positives = 151/219 (68%), Gaps = 2/219 (0%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PLV++ A R+ LP+ VE+ DL+Q+G GL++A+E+++ +G F TYA+QRIRGA+ Sbjct: 89 YAPLVKYVAGRVGTGLPSHVEVSDLIQSGIFGLVDAIEKFEPERGLKFETYAMQRIRGAI 148 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LD+LR++DWVPRSVR AR+V +A+ +LE +L R A++ E+AE L + + + R++ Sbjct: 149 LDDLRAQDWVPRSVRSRARDVERALERLEAKLQRTASDAELAEELELSVDELRELFAQLQ 208 Query: 140 NSQLFSYDEW--REEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL 197 + + + D+ + S+ D + E+P+ L+D + R+++ EA+E L +R+++V+ Sbjct: 209 MTSVVALDDLIGAGQTTSSLAETLPDDRAEDPVATLVDRDSRRQLAEAVERLSDRDRIVV 268 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 TLYY E L L EIG VL V ESRV QLH++A+ RLRTKL Sbjct: 269 TLYYFENLTLAEIGKVLGVTESRVCQLHTRAVLRLRTKL 307 >UniRef50_C8QWD0 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWD0_9DELT Length = 262 Score = 182 bits (463), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 97/224 (43%), Positives = 138/224 (61%), Gaps = 7/224 (3%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PL+++ A RL RLP V +DDL+ G +GL++A+ ++D + F TYA RI+GAM Sbjct: 37 YTPLIKYIASRLASRLPPQVAVDDLISCGIVGLIDAINKFDPAKNVQFKTYAEFRIKGAM 96 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDELR+ DWVPRS+RR E+ Q +LE +LGR AT+ E A LGI + +Y ++L +T Sbjct: 97 LDELRALDWVPRSIRRKVTELEQVCSELEVKLGRPATDEETATALGIGLEEYHRLLDETK 156 Query: 140 NSQLFSYDEWR-----EEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 + + R E G+ E+ D + +P L + + +AI LPE+EK Sbjct: 157 SVSFLDIEYLRRQAPAEVEGNLAEVFASDDK--DPFAALNLGETKALLAKAINELPEKEK 214 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 L + LYY EEL ++EIG VL ESR+SQ+HS+A+ RLR KL K Sbjct: 215 LTVALYYHEELTMREIGEVLGYTESRISQMHSKAMLRLRGKLKK 258 >UniRef50_A0LI23 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LI23_SYNFM Length = 279 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 103/235 (43%), Positives = 148/235 (62%), Gaps = 11/235 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 T E V+ KHS LV+H ALRL RLP V +DDL+ AG IGL++AV++YD+ QG Sbjct: 31 TKELVILKHS------DLVKHMALRLFSRLPDHVSIDDLISAGVIGLIDAVDKYDSGQGI 84 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F YA RIRGAMLDE+R+ DWVPRS+R+ + + LEQ+LGR ++ +VA L Sbjct: 85 PFKFYAKIRIRGAMLDEIRAMDWVPRSLRQKGNVLERTFSALEQKLGRCPSDEQVAGELN 144 Query: 126 IDIADYRQMLLDTNNSQLF--SYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 I I DY ++L + + +E E+G+S L +D E Q +++ + Sbjct: 145 IGIEDYHRLLDEIKGISFLPENINEALLENGESGSLASDS---EELFQHAYRQEIQRHLA 201 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +AI TL E+E+LVL+LYY +EL +KE+G L ESR+SQ+H++AI +LR++L K Sbjct: 202 DAIRTLTEKEQLVLSLYYYDELTMKEVGTALGYTESRISQIHTKAIIKLRSRLAK 256 >UniRef50_C1F998 RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F998_ACIC5 Length = 336 Score = 179 bits (454), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 98/219 (44%), Positives = 139/219 (63%), Gaps = 1/219 (0%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++P VR+ A R+ RLP VELDDL+ AG +GLL+A+ ++D + F +YA RIRGA+ Sbjct: 84 HLPTVRYLARRIHERLPHHVELDDLVSAGVVGLLDAMRKFDPAKKVQFRSYAQFRIRGAI 143 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LD LR DW PR +RR R V +AI + LGR E+EVA +G+ + +Y+Q+L + Sbjct: 144 LDSLRMLDWSPRELRRKGRAVEEAIRAVTARLGRAPQESEVAGEMGLPLHEYQQLLGELK 203 Query: 140 NSQLFSYDEWREEHGDSIELVT-DDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 ++ + R E EL + ++PL + L +R+R+M AI+ LPERE+LV+T Sbjct: 204 GLEIGTLHVERSEDSGEEELAFLPNDPEDDPLFRCLKGEMRERLMAAIDALPERERLVMT 263 Query: 199 LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LYY EE+ +KEIG L V ESRVSQ+HS A+ LR LG Sbjct: 264 LYYYEEMTMKEIGLTLGVVESRVSQMHSSAVLHLRALLG 302 >UniRef50_C6NWP6 RNA polymerase sigma factor for flagellar operon n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NWP6_9GAMM Length = 241 Score = 179 bits (453), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 105/226 (46%), Positives = 150/226 (66%), Gaps = 5/226 (2%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERY-DALQGTAFTTYA 71 + +L RYVPLV+ A RL+ RLPA+V+L DL+QAG IGLL+ +E+Y + AF YA Sbjct: 13 RSALVARYVPLVQRIAQRLRARLPANVDLGDLIQAGLIGLLDVLEQYPEPDDSDAFLRYA 72 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRG+M+DELR +DW+PR R ++V++A+ QLEQ+LGR ++ EVA+ LG D+ DY Sbjct: 73 TLRIRGSMIDELREQDWLPRRARAKEQQVSRAMAQLEQQLGRPPSDQEVAKHLGWDLDDY 132 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDS-NLRQRVMEAIETLP 190 ++ + D+ ++ D + + + D H + ++L S + + EAI LP Sbjct: 133 QKAIADSGGQLVYLEDLAADNDSFVGQYLRDRH---ADISEVLGSLEFDRHLQEAITRLP 189 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 ERE+LVL+LYY+EEL L+EIG VLEV ESRVSQ+ QA+ RLR L Sbjct: 190 ERERLVLSLYYREELTLREIGEVLEVTESRVSQIVRQAVLRLRASL 235 >UniRef50_Q2LT13 RNA polymerase sigma factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT13_SYNAS Length = 261 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/231 (41%), Positives = 148/231 (64%), Gaps = 3/231 (1%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASV-ELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 D+ +L +Y+P V+ R+ ++P + +DL+ G IGL++A+E+YD + F TY Sbjct: 29 DREALILKYLPFVKAVVGRMASKIPIDAGDKEDLIHVGIIGLMSAIEKYDTRRNVRFETY 88 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 A RIRGA+LDELR+RDWVPR+VR E+ +AI L++ L R + E++E LG+ I + Sbjct: 89 AGIRIRGAVLDELRARDWVPRAVRSRDNEITKAISSLQKILRRAPDDHEISEYLGLSIEE 148 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGD--SIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 Y ++L D+ L S ++ ++ D S V ++ + L + D R ++ +A+E Sbjct: 149 YFKLLDDSRCISLISSEDLPGDYLDRYSCSDVIRAVEQGSALDLITDHEFRMQLKKAMEL 208 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 LP++E+LVLTLYY EEL +KEIG VL++ ESRV QLHSQAI RLR + K+ Sbjct: 209 LPDKERLVLTLYYYEELTMKEIGKVLDLTESRVCQLHSQAIFRLRAAVKKI 259 >UniRef50_UPI00016C0EF8 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EF8 Length = 247 Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 145/226 (64%), Gaps = 5/226 (2%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L + Y PLV+ A RL + L + +ELDDLL G IGL++A+++YD + F TYA Sbjct: 20 KEQLIEHYAPLVKIVAGRLGIYLNSYLELDDLLGFGVIGLIDAIDKYDYDKKIKFETYAS 79 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA++DE+R DWVPRS+R+ +E +A ++E ++G + T+T+V + L I+ ++Y Sbjct: 80 LRIRGAIIDEIRKLDWVPRSIRQKQKEYIRAYERVEAKIGHSPTDTDVRKELNINESEYN 139 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 +++ DTN S L S DE + E +D +NP Q+L + + + I L ER Sbjct: 140 KLVHDTNISTLVSIDE-----SELYEFNIEDITTKNPYQELENKEALEILEHEILALTER 194 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E+L++ LYY EEL LKEI +LE+ ESRVSQ+HS+ + +LR KL K Sbjct: 195 EQLLIKLYYYEELTLKEISLILEISESRVSQIHSKLMVKLRNKLKK 240 >UniRef50_P17211 RNA polymerase sigma factor whiG n=26 Tax=Bacteria RepID=RPSW_STRCO Length = 280 Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 97/225 (43%), Positives = 140/225 (62%), Gaps = 5/225 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PLV++ A R+ V LP +VE D + +G GL++A+E++D + F TYA+ RIRGAM Sbjct: 54 YSPLVKYVAGRVSVGLPPNVEQADFVSSGVFGLIDAIEKFDVDREIKFETYAITRIRGAM 113 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +DELR+ DW+PRSVR+ AR V +A LE L R +E+EVA +GI + D + + Sbjct: 114 IDELRALDWIPRSVRQKARNVERAYATLEARLRRTPSESEVAVEMGIAVEDLHAVFSQLS 173 Query: 140 NSQLFSYDEWREEHGD-----SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 + + + +E G+ S+ +D +NP++ D LR+ + AI TLPEREK Sbjct: 174 LANVVALEELLHAGGEGGGRLSLMDTLEDTAADNPVEVAEDRELRRLLARAINTLPEREK 233 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 V+TLYY E L L EIG VL V ESRVSQ+H++++ +LR KL Sbjct: 234 TVVTLYYYEGLTLAEIGNVLGVTESRVSQIHTKSVLQLRAKLAGF 278 >UniRef50_UPI0001B5857A putative RNA polymerase sigma factor n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B5857A Length = 327 Score = 176 bits (445), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 96/219 (43%), Positives = 143/219 (65%), Gaps = 2/219 (0%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PLV++ A R+ LP V++ DL+Q+G GL++A+E++D +G F TYA+QRIRGA+ Sbjct: 103 YAPLVKYVAGRVGTGLPTHVDVGDLVQSGIFGLVDAIEKFDPERGLRFETYAMQRIRGAI 162 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LD+LRS+DWVPR+VR A+E A+A+ +L L R T+ E+A +GI + D R Sbjct: 163 LDDLRSQDWVPRAVRSKAKETARALERLGARLHRTPTDAELAGEMGISLDDLRDFYGQLR 222 Query: 140 NSQLFSYDEWREEHGDSIELVT--DDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL 197 + + + ++ D+ LV D +P+ L+D + R+++ EAI L +R+K+V+ Sbjct: 223 LTSVVALEDLVAAGKDAGSLVDTLPDDGAVDPVAVLVDQDNRRQLAEAIAQLTDRDKIVV 282 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +LYY E L L EIG VL V ESRVSQLH++A+ RLR KL Sbjct: 283 SLYYFESLTLAEIGKVLGVTESRVSQLHTRAVMRLRAKL 321 >UniRef50_Q0EZ50 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ50_9PROT Length = 243 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 145/246 (58%), Gaps = 14/246 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 MN++ L + Y+PLVR+ A +L R P S+E DDL+ AG +GLL+ +R+D Sbjct: 1 MNTMPNYSITPTPDELLEEYLPLVRYHADQLMRRTPDSIEFDDLINAGVLGLLDGAQRFD 60 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 + F T+ R+RGAM+D LR+ DW+PR +R +A+E+ A QLEQ GR A ETE+ Sbjct: 61 HSRDVQFKTFVSYRVRGAMIDYLRAFDWMPRGLRDHAKEMQTAFQQLEQVYGRPAEETEI 120 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEW--REEHGDSIELV-------TDDHQRENPLQ 171 A+ L I + +YR L + + + +D+ + D I ++ D + +N L Sbjct: 121 AKHLNISLDEYRTRLTNVRSMSIIHFDDLPVNNDFDDEISILETLAGDPADTPEAQNSLM 180 Query: 172 QLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKR 231 Q + Q++ + I LP RE++++TLYY EEL +KEI +L + ESRVSQLHSQ + R Sbjct: 181 QFV-----QQLADGISRLPAREQVLVTLYYYEELTMKEIALILGLTESRVSQLHSQMVVR 235 Query: 232 LRTKLG 237 LR +G Sbjct: 236 LRGLMG 241 >UniRef50_D2QYQ7 RNA polymerase, sigma 28 subunit, FliA/WhiG n=7 Tax=Planctomycetaceae RepID=D2QYQ7_9PLAN Length = 261 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 147/227 (64%), Gaps = 7/227 (3%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L + Y+PLV++ R+ RLP VELDDL+ AG GL++A++ +D +G F TY V RI Sbjct: 31 LVEHYLPLVKYNGERIWARLPEGVELDDLISAGIFGLMDAIDAFDMTRGVKFETYCVPRI 90 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGAMLDELR+ DWVPR VR A ++ +A LE LGR+ T E+A ++ + + + +M+ Sbjct: 91 RGAMLDELRTMDWVPRLVRSKASKLGEATKTLEARLGRHPTTVELAAQMEMSVPEVEKMV 150 Query: 136 LDTNNSQLFSYD-EWRE--EHGDSIEL-VTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 + + L S + +W E + D E+ + +D + E+P +++ ++L + V + L Sbjct: 151 SEASAVGLISLNKKWYETDSYKDVREIDILEDKKGEDPTRRIQKNDLMRLVTKG---LNR 207 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E+L++ LYY EEL +KEIGA L++ ESRVSQ+HS + RL+++LG+ Sbjct: 208 NERLIIILYYYEELTMKEIGATLDLSESRVSQMHSSIVSRLQSQLGR 254 >UniRef50_C7QA49 RNA polymerase sigma factor n=7 Tax=Actinobacteria (class) RepID=C7QA49_CATAD Length = 411 Score = 172 bits (436), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 141/222 (63%), Gaps = 5/222 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PLV++ A R++V LP +++ D + +G GL++A+ER++ + F TYA+ RIRGA+ Sbjct: 186 YSPLVKYVAGRVRVGLPGALDSADFVSSGIFGLIDAIERFEPHRHVKFETYAIARIRGAI 245 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +DELR+ DW+PRS+R+ ARE+ QA +LEQE GR +E+E+A LGI + + RQ+ + Sbjct: 246 IDELRALDWIPRSLRQKAREIEQASVRLEQEFGRTPSESEIARELGIGLGELRQIFSKLS 305 Query: 140 NSQLFSYDE---WREEHGDSIELVT--DDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 + + DE + GD I L+ +D +P+ R + A+ +LPER+K Sbjct: 306 LVNVAALDELLALPTQSGDRIPLMETLEDGDAPDPVALFEVQETRALLARAVNSLPERDK 365 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 V+TLYY E + L +IG VL V ESRV Q+H++A+ LR KL Sbjct: 366 TVVTLYYFEGMTLAQIGEVLGVSESRVCQIHTKAVLTLRGKL 407 >UniRef50_Q1Q6T7 Strongly similar to RNA polymerase sigma factor for flagellar operon n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6T7_9BACT Length = 259 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 148/239 (61%), Gaps = 4/239 (1%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y + ++D+ L + LV++ + + LP+ V+ +DL++ G IGLL A ER+D Sbjct: 18 YKNKNLIDREKLVTENLSLVKYVVNKFIIYLPSFVDKEDLIEYGVIGLLEASERFDPCMD 77 Query: 65 TAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 T F T+AV RIRGA+LD LR++DW+PRSVR +A LEQ+L R+ E+A L Sbjct: 78 TKFGTFAVSRIRGAILDHLRAQDWLPRSVREKVSLAREAYATLEQKLNRHPLPEEIAAEL 137 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEW--REEHGD--SIELVTDDHQRENPLQQLLDSNLRQ 180 ID A++ ++L++ N S +E + E G+ ++ ++ D + +PL + ++ Sbjct: 138 KIDTAEWEKLLVEINFGMFLSLEEMNAKSEDGNKEAVGMLFADSKIGDPLSNIETEEEKE 197 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 ++ AI+ LP REKLV+TLYY E+L L+EI +L++ ESRVSQ+H Q + LR+K+ K+ Sbjct: 198 LLVAAIKELPAREKLVITLYYYEDLMLREISQMLDISESRVSQIHHQGLFMLRSKVRKI 256 >UniRef50_C0ZF72 RNA polymerase sigma factor n=5 Tax=Bacillales RepID=C0ZF72_BREBN Length = 262 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 147/228 (64%), Gaps = 13/228 (5%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 R++PLV A RL + LPA+V+ DDL+ G GLL+A+ ++D +G F TYA+ RIRGA Sbjct: 34 RFLPLVDKVANRLAINLPANVDKDDLISYGRFGLLDALAKFDHTRGLQFETYAMWRIRGA 93 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 M+D LR DW+PR+VR A+++ +A LEQ++ R T+ EV++ LGI + +Q+ L+T Sbjct: 94 MIDGLRENDWIPRTVRDKAKKIEEAYTTLEQQMLRMPTDQEVSDYLGISKKELQQVFLET 153 Query: 139 NNSQLFSYDEWREEHGDSIELVTDDHQ--------RENPLQQLLDSNLRQRVMEAIETLP 190 + + + S D E GD E T H R + + ++ S+L++ ++ I+ LP Sbjct: 154 SLASMVSID---EAVGDEDEQKTARHSYIIDELTPRPDNVAEV--SSLKEVLVTVIDKLP 208 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E+E+LV++L+Y EE+ L EI ++ + SR+SQLHS+A+ RLR+ L + Sbjct: 209 EKERLVISLFYFEEMTLSEIAEIMSLSPSRISQLHSKALFRLRSALSR 256 >UniRef50_A8MHG6 RNA polymerase sigma factor n=2 Tax=Alkaliphilus RepID=A8MHG6_ALKOO Length = 245 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 142/224 (63%), Gaps = 4/224 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L + Y+ LV+ A RL + +++E DDL+ G GL++A+E++D + F TYA Sbjct: 20 KALLIEEYIRLVKFIAGRLYISYGSNIEYDDLVSYGIFGLIDAIEKFDLNKQVKFETYAQ 79 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA++D LRS DWVPRS+R+ ++++ +A LE +LGR+AT+ EV+E L I + + + Sbjct: 80 IRIRGAIIDSLRSLDWVPRSIRQKSKKIEEAYSSLENKLGRSATDVEVSEALDISVKELQ 139 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 ++LL+T + + S +E E G L+ + + + + + + I LPER Sbjct: 140 EILLNTASFNVISLEEVIFEVG----LIGNTAEEQLTEDLICRRETYNNLKDTIVQLPER 195 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 E+ V++LYY L KEIG VL++ ESRVSQLHS+AI RL++KL Sbjct: 196 ERQVISLYYYNNLTYKEIGKVLDISESRVSQLHSKAISRLKSKL 239 >UniRef50_Q0AYK8 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYK8_SYNWW Length = 260 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 146/223 (65%), Gaps = 4/223 (1%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 + LV++ A RL + L + VELD+L+ G GL++A+E++D + F TYA+ RIRG+M Sbjct: 32 FAHLVKYVASRLAIHLSSLVELDELISYGIEGLIDAIEKFDHKRNIKFETYAITRIRGSM 91 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +D LRS DW+P S+R+ ++E+ +A +E LGR+A++ EVAE LG+++ ++ +L D Sbjct: 92 IDGLRSMDWIPVSLRQKSKELEKAYMNVEARLGRSASDAEVAEELGLNLDEFAVLLRDVA 151 Query: 140 NSQLFSYDEWRE-EHGDSIELVTD---DHQRENPLQQLLDSNLRQRVMEAIETLPEREKL 195 + + S D++ E G+ + + D DH + + + + ++ + +AI LP++EKL Sbjct: 152 ATTIISLDDFLPGEDGEQKKRMLDLLEDHNSISASEIVEFNEVKDLLAKAISRLPDKEKL 211 Query: 196 VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 V+ LYY E L LKEIGA + + ESR+SQLH++AI RLR L K Sbjct: 212 VVYLYYYEGLTLKEIGATISLSESRISQLHTKAILRLRGSLSK 254 >UniRef50_A4J745 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J745_DESRM Length = 251 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 5/221 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++PLV+H A R+ V+LP+ + +DL G IGL+ A+++YD G +F +YA RIRGAM Sbjct: 26 HLPLVKHLAGRVAVKLPSFILREDLESYGVIGLMEALDKYDPAMGHSFDSYAYHRIRGAM 85 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDE+R ++W+PR+ + + + +LE+E G T +A+ +GI + + RQ++ + N Sbjct: 86 LDEVRRQNWLPRTAWQKNQLLKNTRERLEREQGEVITNEVLAKEMGIPVEEVRQLIFNAN 145 Query: 140 NSQLFSYDEWREEHGDS----IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKL 195 + S DE H S +EL+ +D +PL + + ++ + EAIETL EREKL Sbjct: 146 KMYIQSLDEEVAGHDGSQMSKLELL-EDTNSPDPLSIVEEKESKRLLAEAIETLSEREKL 204 Query: 196 VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +L LYY E L LKEIG VLEV ESRV QLHSQ +KRL+ L Sbjct: 205 ILALYYSEGLTLKEIGQVLEVSESRVCQLHSQVMKRLKKTL 245 >UniRef50_B0K1Q2 RNA polymerase sigma factor n=11 Tax=Thermoanaerobacterales RepID=B0K1Q2_THEPX Length = 246 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 141/220 (64%), Gaps = 4/220 (1%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 +Y+PLV+H +L + E +DL+ G IGL++A+E+Y +G F TYA RIRG Sbjct: 27 KYMPLVKHIVKKLIISDITQSEYEDLINQGVIGLIDAIEKYQPSKGVKFETYATLRIRGE 86 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 ++D LR +DW+PRS+++ R++ + + L+Q+ R T E+ E G++ D + L Sbjct: 87 IIDYLRKKDWMPRSLKKKYRKIEETVETLQQKYNREPTVEEITEACGLNETDVLKTLSYI 146 Query: 139 NNSQLFSYDEWREEHGDSIEL-VTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL 197 N S + S +E E ++ +L D + +NP +++L L++++ AIE LP++E+LV+ Sbjct: 147 NVSNINSLEEAIE---NNFKLHAISDVELKNPEEEVLYKELKRKLANAIENLPDKERLVI 203 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 TLYY E+LN K+I +L + ESR+SQ+H++AIKR+R LG Sbjct: 204 TLYYYEDLNYKDISKILNLTESRISQIHTKAIKRIREILG 243 >UniRef50_D1C190 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C190_SPHTD Length = 264 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/224 (43%), Positives = 141/224 (62%), Gaps = 1/224 (0%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + +L ++Y PLV++ RL+V L A+++ DDLL G IGL+ A++R+D +G F T+A+ Sbjct: 30 REALIRQYAPLVKYVVDRLRVALTATLDRDDLLGYGTIGLIEAIDRFDPERGVKFETFAI 89 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 QRIRGA++D +R+ D VPR+ R+ AR + QA ++ GR E EVA LG+ I +R Sbjct: 90 QRIRGAIIDAVRTLDLVPRTARQRARAIEQAYREIFAATGRMPPEEEVAAHLGMTIDAFR 149 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 Q L D + L R+ G ++E D Q PL + S+L R+ A+E LPER Sbjct: 150 QALQDAACAILPLQQSDRDGEG-TLEDTLPDAQATEPLDAAVRSDLVHRLAAALERLPER 208 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 ++L++TLYY EEL L+EI VL + ESRVSQL S+A +LR L Sbjct: 209 DRLIVTLYYYEELTLREISEVLGITESRVSQLLSRARLQLRALL 252 >UniRef50_C1RMF4 RNA polymerase sigma factor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RMF4_9CELL Length = 328 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 95/222 (42%), Positives = 134/222 (60%), Gaps = 5/222 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 YVPLV A R+ +RLP++VE DL+ G GL++A+E+Y + F +YA RIRGA+ Sbjct: 101 YVPLVTAVAGRIGMRLPSTVEHADLVSYGMFGLIDAIEKYCTDRAVKFESYASSRIRGAI 160 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +DELR+ DWVPRSVR AR V +A G+LE L R TE EVA+RL + +++ R + Sbjct: 161 IDELRAMDWVPRSVRTKARAVDRAYGELEATLHRAPTEAEVAQRLELPVSELRAVYSQLA 220 Query: 140 NSQLFSYDEWREEHGDSIELVT-----DDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 + + + DE D T D + ++P + + + AIE L ERE+ Sbjct: 221 SVNIAALDEMLAGSDDRPGAATLADTLGDRRADDPAGSVEAQETKYLLSRAIECLGERER 280 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LV+ LYY E + L EIG VL V ESR+SQ+H+ A+ RLRT+L Sbjct: 281 LVVVLYYYESMTLAEIGRVLGVTESRISQIHTAAMGRLRTRL 322 >UniRef50_A1HN10 RNA polymerase sigma factor n=4 Tax=Veillonellaceae RepID=A1HN10_9FIRM Length = 252 Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 142/227 (62%), Gaps = 7/227 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L ++Y+PLV+ A R+ + LP ++ +DL+ G GLL+A+ER+D + F TYAV Sbjct: 28 REKLIEKYLPLVKMVAGRVAIGLPQHIDKEDLISYGFFGLLDAIERFDPSRNIKFETYAV 87 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRG++ D +R +DW+P S+R+ R + + + +LE LGR+AT+ E+A+ + + Sbjct: 88 ARIRGSIFDAIRVQDWLPASLRQKGRLLERTVAELENSLGRSATDAEIAQAMNFTVEQLH 147 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 Q++ N S L +E+ + T + N Q++ +++ + +AI+ LPE+ Sbjct: 148 QLINQLNASTLIPLEEFVQNE-------TVNQASPNLAQEIEQEEVKKTLAKAIDRLPEK 200 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 E+LV++LYY E L LKEI +L++ E+R+SQLH++AI RLR L +L Sbjct: 201 ERLVISLYYYEGLTLKEISLILKLSEARISQLHTKAIFRLRGALSRL 247 >UniRef50_P10726 RNA polymerase sigma-D factor n=24 Tax=Bacillales RepID=RPSD_BACSU Length = 254 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 142/226 (62%), Gaps = 2/226 (0%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L +RY+PLV + R+ V LP SV DDL+ G +GL +A+E++D + F TYA RI Sbjct: 27 LMRRYMPLVTYHVGRISVGLPKSVHKDDLMSLGMLGLYDALEKFDPSRDLKFDTYASFRI 86 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGA++D LR DW+PR+ R ++V AI +LEQ RN + E+AE LG+ + D + Sbjct: 87 RGAIIDGLRKEDWLPRTSREKTKKVEAAIEKLEQRYLRNVSPAEIAEELGMTVQDVVSTM 146 Query: 136 LDTNNSQLFSYDE--WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 + + L S DE ++ G++I+++ D + P ++++ L ++ E I L E+E Sbjct: 147 NEGFFANLLSIDEKLHDQDDGENIQVMIRDDKNVPPEEKIMKDELIAQLAEKIHELSEKE 206 Query: 194 KLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +LV++L+Y+EEL L EIG VL + SR+SQ+HS+A+ +L+ L K+ Sbjct: 207 QLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLKNLLEKV 252 >UniRef50_C7I0T1 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Thiomonas intermedia K12 RepID=C7I0T1_THIIN Length = 250 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 138/218 (63%), Gaps = 1/218 (0%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 +++P+VR A ++ +LPASV+ DL QAG IGL +A++R + F TYA RIRGA Sbjct: 18 KHLPMVRRIAGQMAAQLPASVDFSDLEQAGMIGLWDALDRGEMQSPAQFATYAAIRIRGA 77 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 + DELR DW+PR R R++ +A L Q LGR+ + E+A LG ++A+Y L +T Sbjct: 78 IYDELRKLDWLPRRSRAKERQIERAEQLLTQRLGRHPEDGELAAHLGWELAEYYDALAET 137 Query: 139 NNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 + ++ D ++ GD + D+ P + L D+ L + + AI LPEREKLVL+ Sbjct: 138 SMQLVYLEDLTHDDGGDYADRKADEASL-LPEELLQDAQLERDLQAAIADLPEREKLVLS 196 Query: 199 LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LYYQE+L LK+IG VLEV ESRVSQL QA+ RLR +L Sbjct: 197 LYYQEDLQLKDIGRVLEVSESRVSQLMKQAVMRLRARL 234 >UniRef50_B7ATU0 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B7ATU0_9BACE Length = 254 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 140/219 (63%), Gaps = 1/219 (0%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y LV+ A RL + L SVE DDL G GL++A++++D + F TYA RIRGA+ Sbjct: 29 YSQLVKLVAGRLGMYLGYSVEYDDLCGYGIFGLIDAIDKFDCNKNVKFETYASLRIRGAI 88 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LD++R DW+PRS+R+ +++ A+ ++E + G AT+ E+A+ LGI + ++ T Sbjct: 89 LDQIRKMDWIPRSLRQKQKKIDAAMSKIEAQKGSVATDEELAQELGITLDEFNDWQGKTK 148 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQR-ENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 + L S DE+ E G ++ + + R + P + L++ ++EAI L ++E+ V+T Sbjct: 149 ATNLISLDEYTETQGTEAKMDSVTNARFDQPEDVVEKEELKKMIVEAISLLTDKERSVVT 208 Query: 199 LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LYY EE+ LKEI VL+V ESRVSQLH++A+ ++++KLG Sbjct: 209 LYYYEEMTLKEISLVLDVSESRVSQLHTKALLKMKSKLG 247 >UniRef50_Q1IR61 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR61_ACIBL Length = 262 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/215 (44%), Positives = 135/215 (62%), Gaps = 3/215 (1%) Query: 24 VRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDEL 83 V++ A R+ RLP V ++DL+ AG +GL++A +YD+ + F +YA RIRGA+LD L Sbjct: 29 VKYIARRIHERLPRHVPIEDLINAGILGLIDAAGKYDSEKNVQFQSYAKFRIRGAILDSL 88 Query: 84 RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQL 143 R DW PR +RR AR + A +L E G E E+A LG+D+ +R++ + + Sbjct: 89 RDLDWSPRDLRRKARALEAAELRLTSETGHPPLEDELARELGMDLDGFRELTRELEGLGI 148 Query: 144 FSYDEW--REEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY 201 S E E G+ E+V + H+ E+PL L S + ++EAIE LP RE+ VL LYY Sbjct: 149 SSLQEGLPAEGFGEEREVVVESHE-ESPLDAFLRSENHELLVEAIEQLPARERQVLALYY 207 Query: 202 QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 EEL +KE+G VL VGESRVSQ+HSQA+ R+R +L Sbjct: 208 FEELTMKEVGDVLGVGESRVSQIHSQALTRVRARL 242 >UniRef50_A1V9R7 RNA polymerase sigma factor n=10 Tax=Desulfovibrio RepID=A1V9R7_DESVV Length = 265 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 133/222 (59%), Gaps = 4/222 (1%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 +K ++ + Y P +R ALRL+ +LP +VEL +L+ AG +GL+ A+ ++ G F TYA Sbjct: 35 EKEAIVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFETYA 94 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRGAMLDELR DW PRS+R+ R++ +A+ ++E E GR ATE ++ + G+D D Sbjct: 95 ESRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDV 154 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 R L N S E DS+ +P+Q L +RV I+ L Sbjct: 155 RLGLEALQNQLCLSL----EAMQDSLAGEGGPQSDADPMQTAATQELIERVASLIDELTP 210 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 REKLVL+LYY +ELN++E V+ + E RVSQLHSQA+ RLR Sbjct: 211 REKLVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLR 252 >UniRef50_B8FTP4 RNA polymerase sigma factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FTP4_DESHD Length = 248 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 138/227 (60%), Gaps = 9/227 (3%) Query: 18 QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRG 77 ++Y+PLV+ + RL + LP V+ DDL+ G GLL+A+ER+D ++G F TYA RIRG Sbjct: 19 EKYLPLVKRISGRLLISLPQHVDEDDLIGYGVFGLLDALERFDPVRGVKFETYATLRIRG 78 Query: 78 AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLD 137 A++D LR+ DWVP S R+ + + A ++E GR A+ EVA L ++ D L Sbjct: 79 AIIDGLRTMDWVPHSARQKIKRIQDAFAEVEARHGRPASNEEVAVLLEMEPRDLEAALHQ 138 Query: 138 TNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQ------LLDSNLRQRVMEAIETLPE 191 L S DE G+ E T Q +P+ Q LD ++ + +AIE LPE Sbjct: 139 GQMLTLTSLDEV--AVGEEGEAYTPRTQLTDPIAQEAFQEVELDEQ-KKILADAIEKLPE 195 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +EKLV+ LYYQE+L LKEI ++++ ESR+SQLHSQAI RLR +L + Sbjct: 196 KEKLVVALYYQEDLTLKEIAVIMKLSESRISQLHSQAILRLRGRLSR 242 >UniRef50_B1I5J3 RNA polymerase sigma factor n=3 Tax=Peptococcaceae RepID=B1I5J3_DESAP Length = 257 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 141/222 (63%), Gaps = 3/222 (1%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++PLVR A RL VR P+ + +DL G GL+ AVE+YD GT F T+A RIRGA+ Sbjct: 25 HLPLVRLIAGRLAVRPPSFIAQEDLEGWGIFGLIEAVEKYDPNHGTDFRTFAYHRIRGAI 84 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDE+R + W+PRS+ +E+ +A +LE+E G + T+ EVA LG+ ++ ++ Sbjct: 85 LDEVRRQSWLPRSLWHKLQEINEARARLERETGASVTDAEVAASLGMTDLEFHRLANHFR 144 Query: 140 NSQLFSYDEWR-EEHGDSIEL--VTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLV 196 + + S D+ R +G+++ + +D +PL+Q+L+ Q ++ AI L E+++LV Sbjct: 145 SVSVMSLDDVRTTRNGEAVPWGSLIEDTGSPDPLEQVLEEEDHQTLVAAITQLEEKDRLV 204 Query: 197 LTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 L LYYQE L LKE+G VLEV ESR QLH++AI RLR K+ + Sbjct: 205 LALYYQEGLTLKELGRVLEVTESRACQLHARAIARLREKIAQ 246 >UniRef50_C0QXY0 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QXY0_BRAHW Length = 275 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 147/235 (62%), Gaps = 10/235 (4%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPAS--VELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 + +L +Y PLV++ A ++ V + + +E DL+ G GL++A+++Y+ + F TY Sbjct: 38 REALIIKYSPLVKYVASKISVNMGSHKHIEFQDLVGFGSFGLMDAIDKYNPNRDIKFKTY 97 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 AV RIRGA+ DELR D++PRS+R++ +E+ +A LE L RN E+A+ LGI I+ Sbjct: 98 AVTRIRGAIYDELRKLDYLPRSIRKDVKEIEKAREILEARLSRNIKPQEIADMLGIPISK 157 Query: 131 YRQML---LDTNNSQLFSYDEWR-EEHGDSIELVT--DDHQRENPLQQLLDSNLRQRVME 184 Y + + ++ + + L D W + D I ++ + + NP +++ +++ Sbjct: 158 YNETMKRYIEASPTSLS--DVWYVGDDSDEISVIDTLKSNDKTNPEYLAEREDVKNKIIA 215 Query: 185 AIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 A++ LPE+E+ VL LYY ++L LKEIG VLEV ESR+SQLH++AI++LR L ++ Sbjct: 216 ALKKLPEKEQQVLILYYYDDLTLKEIGKVLEVSESRISQLHTKAIQQLRYSLSEI 270 >UniRef50_D1BJ83 RNA polymerase sigma factor n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJ83_SANKS Length = 345 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/224 (41%), Positives = 136/224 (60%), Gaps = 6/224 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PLV A R+ ++LP++VE DL+ G GL++A+E+++ + F TYA RIRGA+ Sbjct: 119 YAPLVTSVASRVGMKLPSTVEHADLVSYGMFGLIDAIEKFELDREIKFETYATSRIRGAI 178 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDELR+ DWVPRSVR AR V +A +LE L R T+ E+AE + I +++ R + + Sbjct: 179 LDELRANDWVPRSVRSKARAVDRAHAELEARLHRAPTDPEIAEHMEIALSELRSIRHLVS 238 Query: 140 NSQLFSYDEWREEHGDSIELV----TDDHQRE-NPLQQLLDSNLRQRVMEAIETLPEREK 194 L + DE GD +E V T R +P + + + +A++ L EREK Sbjct: 239 TVNLVALDEVFGA-GDQVEPVGHLDTGHGARSTDPARTFESKETKFLLSQAMDQLGEREK 297 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++L LYY E + L EIGAVL V ESR+SQ+H+ A+ RLR KL + Sbjct: 298 IMLVLYYYEGMTLAEIGAVLGVTESRISQMHTAAMGRLREKLSR 341 >UniRef50_A3EPQ0 RNA polymerase sigma factor n=4 Tax=Leptospirillum RepID=A3EPQ0_9BACT Length = 251 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 133/222 (59%), Gaps = 3/222 (1%) Query: 18 QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRG 77 + + V+ ALR RLP +++DDL+ AG GLL+A R+D +G F T A RIRG Sbjct: 11 KEFAVTVKFFALRYSHRLPPELDVDDLISAGMGGLLDAARRFDPSRGIKFKTLAEHRIRG 70 Query: 78 AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLD 137 AMLDE+R+ DW+PRSVR V Q +L R T E+A R+ + ++ ++ +D Sbjct: 71 AMLDEIRAADWMPRSVREKLTHVQQVKTELIARYKREPTRQEIAARMDMTEEEFDRLSVD 130 Query: 138 TNNSQLFSYDEWRE-EHGDSIELVT--DDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 L S ++ + E GDS L+ Q +PL LL S + +++ +A++ LPE+++ Sbjct: 131 IEPHHLVSLEDLMDPEDGDSPSLLDRLSAPQEGDPLASLLQSEVSEKLCQALDRLPEKQR 190 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LVL+LYY EEL +KE+ V+ V ESRVSQ+H QA+ L+ L Sbjct: 191 LVLSLYYYEELTMKEVARVVGVSESRVSQIHGQALAALKQSL 232 >UniRef50_A8F4U9 RNA polymerase, sigma 28 subunit, FliA/WhiG n=8 Tax=Thermotogaceae RepID=A8F4U9_THELT Length = 236 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 141/220 (64%), Gaps = 6/220 (2%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 + + +P V+ A+ L LP +VE+DDL+Q G + LL+A+ RYD +G + ++ V+RI Sbjct: 9 IIKEMLPSVKRIAMDLLHTLPKNVEVDDLIQEGVLALLSAIRRYDPKKGVSMYSFVVKRI 68 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 +GAM D LR DW+PR++R+N +EV +AI +LE L ++ + E+A G+ + ++ L Sbjct: 69 KGAMYDYLRKIDWMPRNLRKNVKEVEKAIHELENHLNKHPSIEEIALHTGLSTNEVKRAL 128 Query: 136 LDTNNSQLFSYDEWREEHGDSIE--LVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 +T QL DE+ E DS + DD EN +++ + ++V EAI TL +RE Sbjct: 129 DETVRKQLLRLDEFIYEGLDSFSDIIKADDEPSENAFREI----ILEKVAEAIRTLSKRE 184 Query: 194 KLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +LVL+L ++++L+LKEIG V+ V ESRVSQ+ S ++ +++ Sbjct: 185 QLVLSLRFEQDLSLKEIGTVIGVSESRVSQILSSSLIKIK 224 >UniRef50_Q2RKC7 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKC7_MOOTA Length = 255 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 99/242 (40%), Positives = 136/242 (56%), Gaps = 10/242 (4%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 S + + L +Y+PLV++ RL V+ P ++ +DLL G +GLL AV+RYD Sbjct: 10 TSYMAGRDALRRQELVLKYLPLVKYHVNRLAVKPPPHLDQEDLLGYGIVGLLEAVDRYDP 69 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 +G F T+A QRIRGA+LD LR W PRS+ R +Q QLEQE G ++ VA Sbjct: 70 SRGVNFETFASQRIRGAILDALRRAHWAPRSLIEKLRRASQVYRQLEQEQGGEVSDGAVA 129 Query: 122 ERLGIDIADYRQMLLDTNNSQL-------FSYDEWREEHGDSIELVTDDHQRENPLQQLL 174 LGI A+ R+++ SQ+ F D+ EE EL+ D +P+ Sbjct: 130 RALGITEAELRELM--ERGSQMAILSLEDFLLDQEGEEGTTRGELLADPGS-PDPVGIYE 186 Query: 175 DSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 LR+ + A+E L E+++LVLTLYY E L LKEIG VL + ESRV QLH +AI LR Sbjct: 187 QGELRRALAAALENLKEKDRLVLTLYYYEGLTLKEIGKVLGISESRVCQLHGRAILNLRR 246 Query: 235 KL 236 +L Sbjct: 247 QL 248 >UniRef50_C7R3C2 RNA polymerase sigma factor n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3C2_JONDD Length = 283 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 134/225 (59%), Gaps = 6/225 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PLV A R+ ++LP +VE DL+ G GL++A++++D + F TYA R+RGA+ Sbjct: 56 YAPLVTMIAGRVGMKLPNTVEAADLVSYGMFGLIDAIDKFDPSRDIKFETYASTRVRGAI 115 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +DELR+ DW+PRSVR ARE +A LE L R T E+A+ LG+ D Q+ + Sbjct: 116 IDELRALDWIPRSVRSRAREYDRACEHLENTLHREPTSGEIAQHLGVPEKDVWQLQWQVS 175 Query: 140 NSQLFSYDEWREEHGDSIELVTD-DHQRE----NPLQQLLDSNLRQRVMEAIETLPEREK 194 + + + DE GD ++ ++ D +E +P Q +R+ + +A++ L ERE+ Sbjct: 176 SGHVIALDEVVST-GDRVDQISAMDSVQETLAVDPAQSFAQGEMREILAQAVDHLNERER 234 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 V+TLYY + L EIG +L V ESRVSQ+HS I +LR +L L Sbjct: 235 AVVTLYYFRSMTLSEIGKLLGVTESRVSQMHSAIIVKLRKQLIAL 279 >UniRef50_Q1YV82 Flagellar biosynthesis sigma factor FliA n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV82_9GAMM Length = 240 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 135/217 (62%), Gaps = 5/217 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y+ LV+ AL L+ RLP +ELD+L+Q G IGL+ A + +D+ +G F +A RIRGA+ Sbjct: 23 YIGLVKRVALHLKGRLPNFMELDELIQVGMIGLIEADKSFDSTKGVDFEVFAKNRIRGAI 82 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LD++R ++PRS + R+ +A L ELGR ++ E+A+ +G D +++ + Sbjct: 83 LDQVRKMSYLPRSAIVSIRDHNEASAALTGELGRAPSQAELADFMGKDADTFQK---ERT 139 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTL 199 ++ F + +S++L T + NP ++L++ + +I LPER++ +++L Sbjct: 140 HAHRFQTVSLEAQTSESVDLPTGNSS--NPEKELVEEQFMDALAASIGELPERDRTIVSL 197 Query: 200 YYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 YY EE+NLKEIGAVL+V ESRVSQ+ S +K LR K+ Sbjct: 198 YYVEEMNLKEIGAVLDVSESRVSQILSACVKTLRVKM 234 >UniRef50_B2A375 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A375_NATTJ Length = 250 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 137/226 (60%), Gaps = 4/226 (1%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L Y LV+ + ++ + + DDL+ G IGL++A++++D + F YA RI Sbjct: 21 LISEYSYLVKKQVDKVNYPSISGLNRDDLISFGVIGLIDAIKKFDINRNVPFEAYANIRI 80 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGA+LD LR D+VPR++R + + +LEQ+LGR T E+A ++ I A+ + L Sbjct: 81 RGAILDGLRKFDFVPRNLREEMKTLHSEYRKLEQKLGRTPTNNELAYQMSISEAELDK-L 139 Query: 136 LDTNNSQLFSY--DEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 N + SY D E G+ ++E + D +P ++ + +Q + +AI+TLP++ Sbjct: 140 WQATNCVIPSYLSDYITAEEGELTLEDIYPDSNSPDPQSRIDEKTTKQELGQAIDTLPQK 199 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 EKLVL+LYY EEL LKEI +LE+ ESR+SQLHS+A+ RLR KL K Sbjct: 200 EKLVLSLYYYEELTLKEIAKILELTESRISQLHSKAVLRLRGKLAK 245 >UniRef50_C0GLF1 RNA polymerase sigma factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GLF1_9DELT Length = 261 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 DK+ + + Y +R A RL+ +LPA V+++DL+ AG +GL+ A+ +D QG T+A Sbjct: 35 DKNEIVRAYGQKIRITAARLKHKLPAHVDVNDLISAGSLGLIEALGNFDPTQGIKLETFA 94 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RI+GAMLDELR DW R +R+ +++ Q++ + EQ G + + +E+ E G + Sbjct: 95 DNRIKGAMLDELRRMDWFSRGLRKKVKKLEQSMREFEQNTGHSPSHSELKEITGYSREEV 154 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 + LL N S + +E + +D+ Q L+D +V IE L Sbjct: 155 EEGLLALQNQICLSLEAIQENFSATGTQDSDEPQLSVVFHDLVD-----KVAAIIEKLSN 209 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +E+LVL+LYY EEL +KE+ VL+V E RVSQLHSQAIK+++ + Sbjct: 210 KEQLVLSLYYTEELTMKEVAQVLDVTEGRVSQLHSQAIKKVKDNFAQ 256 >UniRef50_B5JK56 RNA polymerase sigma factor, FliA/WhiG family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK56_9BACT Length = 269 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L++ Y+PLVR R+++ LP ++ DL G GL+ A+++YD Q +F +YA RI Sbjct: 39 LFETYMPLVRSIVARIKINLPPHIDEQDLHSVGITGLIAALKKYDPAQKKSFGSYAAMRI 98 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RG++LDELR DW+PR+ R N +++ I ++EQ LGR ATE E+ LG++ +Y Q++ Sbjct: 99 RGSILDELRRMDWMPRNARTNFKKLRATIEEVEQRLGRPATEEEIRAELGLNRKEYDQLM 158 Query: 136 LDTNNSQLFSYDEWRE-----EHGDSIELVTDDHQRENPLQQLLDSNLRQR-VMEAIETL 189 +T D E D E++ DD+ P+ ++ + R V E I L Sbjct: 159 AETRPVSFLPLDNAAAGGDDGEGADLYEVIPDDNV--VPVTSKMEKDEVTRLVAERINQL 216 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 PE + VL +YY +++ L EI V + ESR+ Q+HSQAI LR+ Sbjct: 217 PETPRKVLAMYYFQDMRLAEIAEVFGLTESRICQIHSQAIISLRS 261 >UniRef50_C2KYZ5 RNA polymerase sigma factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ5_9FIRM Length = 259 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 144/238 (60%), Gaps = 3/238 (1%) Query: 3 SLYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 +LY G + K L RYV +VR A +++ ++ DD++ G I ++ A+ERYD Sbjct: 19 ALYKETGSQEVKQELTMRYVYIVRSIAYQMREMYHDFMQTDDIVNEGVIEIMRAIERYDE 78 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 + F T+ +RIRG ++D +R DW+PR+ +++R + A +L LGR T+ E+A Sbjct: 79 SKDNKFETFISRRIRGMVIDMMRKNDWLPRNFHKDSRSIETATVELNNRLGRAPTDEELA 138 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQ 180 + L +++ +++ +N + S D +E +++ ++ ++DH + + N+R Sbjct: 139 DYLNMNVKKLQKIQRMSNMVNVLSLDMTYDEGNETLLQIPSEDHSTQPEFSFMQKENVRA 198 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + EAIE+L E+EKLV++LYY EELN+ +I V+EV + RVSQLHS AI++LR +G+ Sbjct: 199 -LTEAIESLQEKEKLVISLYYVEELNMNQIAEVMEVSQPRVSQLHSIAIRKLRKYMGE 255 >UniRef50_Q01PP5 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PP5_SOLUE Length = 251 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 133/237 (56%), Gaps = 3/237 (1%) Query: 5 YTAEGVM---DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 Y+ G M ++ L ++P VR A R+Q RLP S+ LDDL+ G +GL++A++ +DA Sbjct: 4 YSVSGEMREDERERLILEHLPQVRLIARRIQERLPESISLDDLVSTGVLGLISAIDNFDA 63 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 TYA +IRGA+LD LR DW PR RR ++++ AI EQ L + E E+A Sbjct: 64 SHNVKLKTYAEYKIRGAILDSLRGLDWAPRQKRRKSKQIEAAIAVAEQRLHASPGEEEIA 123 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 LGI + +Y + L++ + S + E G + D P L S L + Sbjct: 124 GELGITVDEYHEWLVEIRGLNVASLEYAGNEQGRDLLHYIPDGSDNLPSTLLERSELERL 183 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + +I+ +P E+ VL+LY+ EEL L+EI V+ + ESR+SQL SQAI RLR ++ Sbjct: 184 LASSIDGIPAIERTVLSLYFHEELTLREIAQVVNLHESRISQLKSQAILRLRGQMAS 240 >UniRef50_B9L5B4 RNA polymerase sigma-D factor (Sigma-28) n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L5B4_THERP Length = 262 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 138/225 (61%), Gaps = 3/225 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L ++Y PLV++ RL++ LP SVE DDL+ G IGLL A++R+D +G F TYA Sbjct: 25 RAQLVEQYAPLVKYVVDRLRLSLPPSVERDDLIGYGTIGLLEALDRFDDTRGVKFETYAA 84 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+LD LR+ D VPRS R AR++ QA + E GR +E E+A+ LG+ + + Sbjct: 85 MRIRGAILDALRTLDIVPRSARSRARQIEQATREFFAEYGRMPSENELADHLGMTTTELQ 144 Query: 133 QMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 Q + D + LF + E+ ++E D P + + +L+QR+ A+ TL E Sbjct: 145 QAISDA--ACLFLPLQASEDPDTLTLEEQLADPNALEPGEVAAEEDLKQRIAAALATLSE 202 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 R++L+++LYY E+L ++EI +L + ESRVSQ+ ++ +LR L Sbjct: 203 RDRLIVSLYYYEDLTMREISQLLGISESRVSQILNRVRLQLRALL 247 >UniRef50_A9BHZ2 RNA polymerase sigma factor n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHZ2_PETMO Length = 231 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 136/224 (60%), Gaps = 5/224 (2%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 +++ L ++P ++ AL L+ LP ++EL+DL+Q G IGLL + +RY+ +GT+F TY Sbjct: 5 INEEQLVMEFLPKIKIIALNLKTTLPKNIELEDLIQEGIIGLLQSYKRYNPEKGTSFYTY 64 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 A++RI+G+M D LR DW+P+ VR ++ I + + + VAE+L I+ D Sbjct: 65 ALKRIKGSMYDYLRRIDWLPKDVRSLVKKYEDLIYECKD--NEYIDDNSVAEKLHIEKND 122 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSN-LRQRVMEAIETL 189 ++ + Q+ DE+ + + L +D Q EN + L + L ++ E+IE L Sbjct: 123 VDKIKFSLSKRQILQLDEYFLNNEEDTWL--EDIQEENDPEILAYKDMLHDKLTESIEKL 180 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 EREKL+L+LYY E L KEIG+VLE+ ESRVSQLHS + +L+ Sbjct: 181 EEREKLILSLYYNEGLTFKEIGSVLEISESRVSQLHSVILVKLK 224 >UniRef50_D1B696 RNA polymerase sigma factor n=2 Tax=Synergistaceae RepID=D1B696_THEAS Length = 245 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/230 (41%), Positives = 140/230 (60%), Gaps = 10/230 (4%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 ++ + +RY+PLV++ A R+ V P ++ DD+L G +GLL+A++R+D +G F T+A Sbjct: 20 NRERIVKRYIPLVKYVAGRMAVTPPPGLDYDDILSFGVMGLLDAMDRFDPSRGFCFQTFA 79 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 V RIRGA+LDELR DW+ R+ R + + +A+ + G + + ERLG++ Y Sbjct: 80 VPRIRGAILDELRRYDWISRTGRDKLQRLERAM-EEAAAEGTLLDDEALMERLGMNEKSY 138 Query: 132 RQMLLDTNNSQLFSYDE-WREEHGDSIELVTDDHQRENPLQQLLDSNLRQR----VMEAI 186 R++L + S + S DE E G+ V D E+P + R+ V A+ Sbjct: 139 RELLEIASRSYVVSLDEVLGLEDGE----VKRDGLLEDPSPSPQEEVERREELALVRRAL 194 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 E LPERE+L+L+LYYQE L LKE+GAVL V ESR SQLH +AI LR+KL Sbjct: 195 EELPERERLLLSLYYQEGLTLKEVGAVLGVTESRASQLHGRAIAMLRSKL 244 >UniRef50_C0QA49 RNA polymerase sigma factor n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QA49_DESAH Length = 238 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 136/221 (61%), Gaps = 4/221 (1%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y LVR A R RLP+SV D+L+ AG +GL++AV+++D+ + + TYA RI+GA+ Sbjct: 5 YAFLVRQIASRFARRLPSSVLFDELVSAGSLGLIDAVDKFDSGKHVSLKTYAQYRIKGAI 64 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDELRS D RS+R+ +++++A+ +E + A++ EVA+ L + + Y ML D + Sbjct: 65 LDELRSMDTYSRSMRKKIQDISRAVKAIEDKKKGPASDNEVAKLLEVPLESYYDMLTDIH 124 Query: 140 NSQLFSYDEW-REEHGD--SIELVTDDHQRENPLQQLLD-SNLRQRVMEAIETLPEREKL 195 + + S D + R D S+ + E+ LLD L+ + A+ TL E+E+L Sbjct: 125 GAAILSLDAFIRTGDNDTSSMTRFQAGIKGEHTPADLLDREELKGVLARAVTTLTEKEQL 184 Query: 196 VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 V++LYY EEL LKEIG VL + ESR+ Q+H+ + +L+ K+ Sbjct: 185 VVSLYYYEELTLKEIGEVLTLTESRICQIHTAILIKLKVKI 225 >UniRef50_A4SI42 RNA polymerase sigma factor n=3 Tax=Aeromonas RepID=A4SI42_AERS4 Length = 235 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 125/218 (57%), Gaps = 12/218 (5%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 RY+PLV+ A L+ ++ A + +D+ Q G +GLL A RYD+ F +YA +RIRGA Sbjct: 25 RYLPLVKRAASHLRSQVSACFDQEDMEQVGMMGLLEAWRRYDSEPDPQFESYAFKRIRGA 84 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 MLDELR DW PR +R+ QA +L LGR TE E+A L + + RQ+ + Sbjct: 85 MLDELRRLDWRPRQLRQQVHSHNQAQRELYNRLGRAPTEQELAVSLNCTVEEVRQLAYAS 144 Query: 139 NNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 L S +EW E G + +D D ++ + + + +L +RE+L+L+ Sbjct: 145 QAEALQSLEEWLENGGKAPATESD------------DVDMAMTISKVLTSLDKREQLLLS 192 Query: 199 LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LYYQ+ELN+KEI VL + ESRV QLH Q + +L+ +L Sbjct: 193 LYYQQELNMKEIALVLGLTESRVCQLHKQCVLQLKQRL 230 >UniRef50_Q1AW69 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW69_RUBXD Length = 264 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 134/218 (61%), Gaps = 8/218 (3%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PLV++ A R+ R+P VE +DL+ G +GLL AVE +D +G F TYA+ +IR A+ Sbjct: 51 YSPLVKYVAGRMAARIPGGVEQEDLVSWGVVGLLKAVETFDPARGAKFETYAISKIRWAI 110 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDELR D +PR VRR RE +A L Q L R TE E+A +G+ +A++R+ L + Sbjct: 111 LDELRKADPLPRRVRRRVRETQRAASALTQTLRRAPTEAEIAREVGVGLAEHRETLERYH 170 Query: 140 NSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 ++ +S +E G+ EL D E + LR+R+ EA+E+L ERE++V+T Sbjct: 171 RARTWSLEELLSGMGEGGRELSVSDPTAET-------AELRERLAEALESLSERERVVIT 223 Query: 199 LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 YY + L L+EIG L + E R+SQ+ +A++RLR +L Sbjct: 224 FYYYQGLTLREIGRALNLTEGRISQILRRALQRLRDRL 261 >UniRef50_B1ZR25 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 Tax=Opitutaceae RepID=B1ZR25_OPITP Length = 262 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 133/235 (56%), Gaps = 11/235 (4%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 +D+ L +R++ LVR+ R+++ LP ++ DDL G GL+ AV ++D QG F +Y Sbjct: 28 VDEKDLIERHLYLVRNVVDRIKLNLPTHIDADDLYSVGVTGLIAAVRKFDPEQGCTFASY 87 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 A RIRGA+LDELR DW PR R +R++ + I ++EQ+LGR A++ E+ LG+ D Sbjct: 88 AAMRIRGAVLDELRRMDWCPRRARARSRKLKETIIEVEQKLGRAASDEEICSALGLTQKD 147 Query: 131 YRQMLLDTNNSQLFSYDEWRE-EHGDSIEL------VTDDHQRENPLQQLLDSNLRQRVM 183 Y + + D + D E E G+ L TD REN ++ L L QR+ Sbjct: 148 YAKWVEDARPVTFLAIDHRNENEDGEGASLHELLKDETDVTGRENLEKRELLELLTQRIS 207 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E LP+ K +L +YY E + L EI AV + ESR+ Q+H+Q I LR LG+ Sbjct: 208 E----LPDIPKKILAMYYFENMRLAEIAAVFNLTESRICQIHAQTILGLRGYLGR 258 >UniRef50_B8CYP4 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYP4_HALOH Length = 254 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 132/221 (59%), Gaps = 7/221 (3%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y+PLV+++ R+++ +P +E DDL G IGL++A+E+YD G F TYA +RIRG++ Sbjct: 33 YLPLVKYQVERVKMIIPDFIEEDDLESYGIIGLIDAIEKYDYRLGIKFNTYASRRIRGSI 92 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +D LR DW+P S+RR +E+ + +L +ELGR T E+A + I ++ N Sbjct: 93 IDHLRKLDWLPHSLRREGKELQKVADKLAKELGRKPTVAELANKTNISREKVTKIYSKLN 152 Query: 140 NSQLFS-YDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM-EAIETLPEREKLVL 197 +++ S Y++W E + D P ++LD R +++ AI+ L E E+ V+ Sbjct: 153 SAKWVSLYEDWGE--STVFNFIKGDCL---PPDRILDKKERIKLLARAIDRLSESERTVI 207 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +LYY EEL KEI V+ + +R+SQ+H +A+ RLR L + Sbjct: 208 SLYYYEELTQKEIAEVMGLSPARISQIHKRAVYRLRGYLAR 248 >UniRef50_Q01T87 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T87_SOLUE Length = 255 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 130/219 (59%), Gaps = 13/219 (5%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++PLV+ A+R+ LP V+LDDL+ AG +GL +AV +YD + AF +YA RI+GA+ Sbjct: 26 HLPLVKAIAIRVHENLPVHVDLDDLIHAGVMGLFDAVTKYDGDKNVAFHSYAKHRIKGAI 85 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LD LR DW R +RR ++V L +LGR+ ++E+AE++G+ +A +RQM ++ Sbjct: 86 LDSLRQLDWASRDLRRRQKQVESVTRDLGVKLGRSPHDSEIAEQMGVGLARWRQMQIEMR 145 Query: 140 NSQLFSY------DEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 L S D R + + + D E Q+ L+S L + AI TLP R Sbjct: 146 TVGLVSATPNPDQDRERAQEFPAKPNLQPDRMCE---QRQLESTLAR----AIGTLPLRY 198 Query: 194 KLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 + V+ LYY +L +KEIG VL V ESRVSQ+H A+K++ Sbjct: 199 QKVVFLYYTNDLTMKEIGEVLGVNESRVSQIHKIALKKM 237 >UniRef50_A7HK15 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 Tax=Thermotogaceae RepID=A7HK15_FERNB Length = 233 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 146/234 (62%), Gaps = 14/234 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 +++K + Q Y+P+V A L++ LP +VE+DDL+Q G I LL A E+YD G F T Sbjct: 1 MLNKEMVIQEYIPMVTKIARDLKINLPYNVEIDDLIQEGVIALLQAAEKYDPRYGATFKT 60 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 +A R++GAM+D LR D++P++VR++ ++ + + ++ R T E++E LGID+ Sbjct: 61 FAYTRVKGAMIDYLRKLDYLPKNVRQDIKKFDRELLNFYEQNKRLPTYDEMSEILGIDVE 120 Query: 130 D----YRQMLLDTN---NSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + YR++ L + + LF DE +G SI++ ++++ +EN + + L +++ Sbjct: 121 EVEEIYRELALKQSLNLDQYLFESDE--NSYG-SIDIKSEENVKENAWKSI----LHEQL 173 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +EAI L E+EK++L++ ++ EL+LKEI VL V ESRVSQ+ + +LR L Sbjct: 174 VEAINKLDEKEKIILSMRFEHELSLKEIAEVLGVTESRVSQILGVILSKLRKML 227 >UniRef50_C0C1N2 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1N2_9CLOT Length = 274 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 137/234 (58%), Gaps = 5/234 (2%) Query: 4 LYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 LY G ++ K + RY+ +V+ A++++ +++D++ G I L+ A+++Y+A Sbjct: 22 LYRKTGSLEVKQEIALRYLYIVKSIAVQMRNVYAGFSQVEDIVNEGVIMLMKAIDKYEAD 81 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 + F TY +RIRG ++D R +DW+PR+VR++ R++ +A E GR E++E Sbjct: 82 KNAKFETYVSKRIRGMIIDIARKQDWIPRTVRKSYRDIKEASAVFYSEHGREPEAEELSE 141 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYD---EWREEHGDSIELVTDDHQRENPLQQLLDSNLR 179 L +DI +R ++ + + S D E +E SI+ + D + E P L+D R Sbjct: 142 LLHMDIEKFRDIMGKASLFSVLSLDMVLEETKEQYRSIQ-IPSDKKEEQPEAHLMDKEFR 200 Query: 180 QRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + I +L E E+ V++LYY EELN+KEI +L V E R+SQ+H+ AI++LR Sbjct: 201 HMLADGIRSLKENEQTVISLYYMEELNMKEIAGILHVSEPRISQIHAGAIRKLR 254 >UniRef50_C4ZA81 RNA polymerase sigma factor n=3 Tax=Clostridiales RepID=C4ZA81_EUBR3 Length = 255 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 134/221 (60%), Gaps = 6/221 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y LVR A RL + L +VE DDL+ G GL++A+++++ + F TYA RIRGA+ Sbjct: 29 YAQLVRLVAGRLSMYLGHNVEYDDLVSYGIFGLIDAIDKFNLEKNVKFETYASLRIRGAI 88 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI---DIADYRQMLL 136 LD++R DW+PR+VR+ R++ +AI +E G+ A + ++A+ L I ++ ++ L Sbjct: 89 LDQIRKMDWIPRTVRQRQRKIDEAIKNIELRTGKTANDADLAKELSISEDELCSWQSQLK 148 Query: 137 DTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLV 196 TN + S DE+ E + + + P + + L+ ++++++ L E+E+ V Sbjct: 149 VTN---VVSLDEFDESGPEPVMDAAHNSHYAQPEEIVTQEELKTMLVKSLDNLTEKERRV 205 Query: 197 LTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + LYY E+L LKEI +LEV ESRVSQLH++ + ++R +G Sbjct: 206 IELYYYEDLTLKEISNILEVSESRVSQLHTKGLIKMRKVMG 246 >UniRef50_C7LQN4 RNA polymerase sigma factor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQN4_DESBD Length = 267 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 DK + + + P ++ AL L+ +LPA +EL DL+ AG +GL+ A+ ++ F T+A Sbjct: 39 DKDCIARAFAPRIKIIALHLKAKLPAHIELSDLISAGTLGLMEALGKFQPELNIRFETFA 98 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRGAMLDELR DW R +R+ +++ Q I EQE G T +E+ E G D + Sbjct: 99 DSRIRGAMLDELRRMDWYSRGLRQRIKKLEQVIRGFEQENGHAPTRSELLELTGQDRQEL 158 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 L N+ + S D +++ D P + ++ ++ I+ L E Sbjct: 159 EATLEAVNSQIILSLDAIQDQWNQP----GDGGNHREPFAAVAFHDIIDKLGHLIDRLNE 214 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 REKLVL+LYY EE N+KE+ L++ E RVSQLHSQA+ +L+ Sbjct: 215 REKLVLSLYYTEEFNMKEVALALDITEGRVSQLHSQALGKLK 256 >UniRef50_Q3A5E9 RNA polymerase sigma factor n=4 Tax=Deltaproteobacteria RepID=Q3A5E9_PELCD Length = 255 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 137/229 (59%), Gaps = 2/229 (0%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 +K L + ++ +V A R+ ++PA + +D+ A +GL++A R+ G F T+A Sbjct: 14 EKDRLIKSHLHMVSFLAERMVSQVPAFMTREDISSAAMVGLVDAANRFKPSMGVLFKTFA 73 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 +R+RGA+LDE+R DW RS+R+ +A+ + LE+ LGR E E+A L +D+ Y Sbjct: 74 EKRMRGAVLDEVRRMDWFSRSLRQKQSRIAKTMEALEKRLGRPPEEHEMAAELEMDLESY 133 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENP--LQQLLDSNLRQRVMEAIETL 189 RQ L + + S E E+ D ++ + + +P ++ L +S L Q + I+ L Sbjct: 134 RQALGEVSYLGCVSLHETIEDTPDGPTMLDNIEDQNSPSAVEMLENSELTQELARQIDRL 193 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++E+LV++LYY EEL+ KEI VLE+ E RVSQLHSQA+ +L+T + + Sbjct: 194 TDKERLVVSLYYYEELSQKEIAEVLELSEGRVSQLHSQALIKLKTSIKR 242 >UniRef50_A3DCQ4 RNA polymerase, sigma 28 subunit n=6 Tax=Firmicutes RepID=A3DCQ4_CLOTH Length = 218 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 123/193 (63%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L Y +V++ A RL + ++VE DDL+ G GL++A+E++D +G F TYA Sbjct: 24 KEQLIIEYSNIVKYIAGRLSIYFGSNVEYDDLIGYGIFGLIDAIEKFDINKGVKFETYAS 83 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRG+++D +R DWVPRS+R+ +E+ + ++E ELGR+A++ EVA++LGI + + Sbjct: 84 LRIRGSIIDSIRELDWVPRSLRQKNKELEKVYAEIENELGRSASDKEVADKLGITVDELN 143 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 ++L + N S + S +E+ E++ + + + E P + + LR+ + +AI LPE+ Sbjct: 144 KLLNEVNLSSMISLEEFLEQNYEIGVTTAPESRDEKPEGYIEMAELREILADAISKLPEK 203 Query: 193 EKLVLTLYYQEEL 205 EK+V+TLYY E+ Sbjct: 204 EKMVITLYYFGEV 216 >UniRef50_B2V6T3 RNA polymerase sigma factor n=6 Tax=Aquificales RepID=B2V6T3_SULSY Length = 242 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 142/235 (60%), Gaps = 12/235 (5%) Query: 12 DKHSLWQRYVPLVRH--EALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 +K ++ + ++P + + +AL+ Q LP V+ +DL Q G +GL +A+E++D +G F+T Sbjct: 7 EKTNIIKEFLPKINYIVKALKHQ-NLPPIVDEEDLFQVGVLGLYDALEKFDPAKGVKFST 65 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA R+RG +LD LR DW+PR++R + + I +LE +LGR A E+AE LG+ + Sbjct: 66 YAEIRVRGYILDHLRQLDWIPRNIRNKVKNLENKIVELETKLGREAKPEEIAEYLGMSLE 125 Query: 130 DYRQMLLDTNNSQLFSYD-EWREEHGDSIEL----VTDDHQRENPLQQLLDSNLRQRVME 184 +Y N L S D + ++ +S+ L T+D + P + + + L++ + + Sbjct: 126 EYMIYAEKAVNKILISLDSDVSKDDDESLHLWEVISTND---DTPEKYVEEKQLKEILSD 182 Query: 185 AI-ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 I L EREKL++TLYY E+LN+KEI +L ESRVSQLH++ + ++R + K Sbjct: 183 IIMNKLDEREKLIVTLYYYEDLNMKEIAEILGCTESRVSQLHTKIMLKIRKLIEK 237 >UniRef50_A8GYJ9 RNA polymerase sigma factor n=8 Tax=Shewanella RepID=A8GYJ9_SHEPA Length = 240 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 127/216 (58%), Gaps = 10/216 (4%) Query: 18 QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRG 77 ++Y+PLV+ +L+ ++ ++D+ Q G + LL + RY F ++A QRIRG Sbjct: 27 KQYLPLVKRSVSQLRSHCGIALAIEDMEQIGMMALLESARRYPGEYDNGFLSFAGQRIRG 86 Query: 78 AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLD 137 A+LDELR +DW PR VR+ A E+ + +L + L R T+ EVA+ +G+ +YR+ L Sbjct: 87 AILDELRRQDWRPRPVRQQAHELNDMVRKLTRSLKREPTDLEVAQSMGLSQVEYRERLFA 146 Query: 138 TNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL 197 + + + S D EL+ D E+ L + ++ + +AI L +RE+++L Sbjct: 147 SQSESMRSLD----------ELIGDGGHFEDKSDMLEQFSTKETLFQAILKLNKREQIIL 196 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +LYYQ ELNLKEI A L + E+R+ QLH A+K+L+ Sbjct: 197 SLYYQHELNLKEIAATLGLTETRICQLHKHAVKQLQ 232 >UniRef50_UPI0001C30F67 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30F67 Length = 262 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y P+V++ A R+ R+PA V++ DL+ G GLL+AVER++ ++G F YA RIRGA+ Sbjct: 33 YSPIVKYVAGRVAARMPAHVDVADLISDGFKGLLDAVERFEPVRGVRFEAYADTRIRGAI 92 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 D LRS DWVPR+VR ARE+ +A +L L R T+ E+A L + L + Sbjct: 93 FDGLRSLDWVPRAVRAEAREIERATAELAMRLQRMPTDPELAGALSMSRRQLAASLQRVS 152 Query: 140 NSQLFSYDE-WRE--EHGDSIELVT--DDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 +S++ + DE W G + L+ D +P ++ +R+ A+ LP RE+ Sbjct: 153 DSRIVALDEPWGPVLADGRPVALLDTLPDLDAVDPAADSDETERSERIGAAVRQLPAREQ 212 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 +VL L Y +L L +IG VL + ESR SQLH++A +L+ L Sbjct: 213 VVLGLRYHHDLTLLQIGEVLGISESRTSQLHTKAALQLKAVLA 255 >UniRef50_Q2T8W7 RNA polymerase sigma factor for flagellar operon FliA n=11 Tax=Betaproteobacteria RepID=Q2T8W7_BURTA Length = 369 Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 132/221 (59%), Gaps = 20/221 (9%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y P+V+ A +L+ + + LDD+ Q G +GLL A+ RY + AF YA R+RGA+ Sbjct: 162 YAPIVKRAARQLKSQAVGMLTLDDIEQIGLMGLLEALRRY-GMPDAAFPCYAATRVRGAI 220 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDELR DW PRSVR A +L + LGR TE EV+ LGI A+YR+ ++ N Sbjct: 221 LDELRRHDWRPRSVRLEAHRTRDCERELCRSLGREPTEAEVSSALGISTAEYRERVMANN 280 Query: 140 NSQLFSYDEWREEHGDSIELVTDD---HQRENPLQQLLDSNLRQRVME-AIETLPEREKL 195 + S+D ++ DD H+ E+P +Q+ +R+R +E A+ L ERE+ Sbjct: 281 AEAMASFD----------SVLDDDALTHE-ESPERQI----VRRRCLEQALARLNEREQR 325 Query: 196 VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 V+ LYY+ +L+L+EI +VLE+ E+RV Q++ A+K++R L Sbjct: 326 VIQLYYEFDLSLREIASVLELTEARVCQINKAALKKMREVL 366 >UniRef50_C1A543 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A543_GEMAT Length = 251 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 133/247 (53%), Gaps = 21/247 (8%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y A + L + ++ LV H A ++ L + D+L+ AG IGL+ A+E +DA +G Sbjct: 9 YQAGNPSARDRLLEEHLGLVHHVARQVSRTLAVRADFDELVSAGTIGLMTALEGFDASRG 68 Query: 65 TAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 AF+T+A RIRGA+LDELR +D VPRS+RR RE+ A ++ GR + E+AE+L Sbjct: 69 LAFSTFAAPRIRGAILDELRKQDHVPRSIRRKTREITAAREAFQRASGRAPEDRELAEQL 128 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIEL------------VTDDHQRENPLQQ 172 +D+ + D + D E ++ + V D E + Sbjct: 129 NVDLETLWRWQADVEGAHHIPLDRAPGERENTTPVPAEVLTSGEESGVEDSLTHEQEVSH 188 Query: 173 LLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 L D+ LR L E+E++VL+LYY EEL L EI VLE+ ESRVSQ+ S+A+ +L Sbjct: 189 LKDAILR---------LKEQERIVLSLYYFEELKLHEIAKVLELTESRVSQIRSKALSKL 239 Query: 233 RTKLGKL 239 R +L L Sbjct: 240 RVELKPL 246 >UniRef50_C9YCL3 RNA polymerase sigma factor n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCL3_9BURK Length = 264 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 134/229 (58%), Gaps = 6/229 (2%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA-LQGTAFTTY 70 D L + + P+VR A + RLP +V+ DL+Q G +GL+ A+ R+ GT F Y Sbjct: 11 DTRKLVEDHQPVVRSVANHVGRRLPPNVDRADLVQDGMLGLMEALLRWTKESSGTHFENY 70 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 R +GAM+D LR+ D V R VR++ R V A+ QL LGR TE E+A++L + +AD Sbjct: 71 IALRAQGAMIDGLRAADPVSRQVRKDMRRVEVALQQLSHRLGRPPTEGELAKQLDMPLAD 130 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQREN--PLQQLLDSNLRQRVMEAIET 188 Y+++L D L S + GDS++ +N PL L + LRQ + E+I+ Sbjct: 131 YQRLLQDAQGYVLISLQDLT---GDSVDQYLKRCLEDNADPLALLERAALRQALAESIQL 187 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LP + +++LTLYY+ E+ + EI L + E+R+SQ+H+Q+I +LR L Sbjct: 188 LPRKSQILLTLYYEHEMRMHEIAKHLGLSEARISQMHTQSIAQLRASLA 236 >UniRef50_B5YIY5 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIY5_THEYD Length = 236 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 130/228 (57%), Gaps = 2/228 (0%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 DK SL ++++P ++H ALR + + +EL+DL+ AG GLL A+ +Y+ + Sbjct: 7 DKESLIKQFLPKIKHYALRYHHIVQSVLELEDLISAGIKGLLEALNKYNPSLNVPLVAFI 66 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRGA+LDE+RS D + R+ V + L+Q G++ T+ E+A L I + Sbjct: 67 DYRIRGAILDEIRSVDVFSKEFRKKVENVKKTYKNLKQS-GKDPTDEELANYLNITQEEL 125 Query: 132 RQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 +++ S + S D + E+GD + L+ +N + + L++++ AIE L Sbjct: 126 QEVYQSITASDIVSLDSFVVGENGDKLNLLEVISDEKNIFEDIKFRELKEKLTSAIENLS 185 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E EKL+++LYY EELN+KEI VL + SRVSQ+H + + +L+ L K Sbjct: 186 ETEKLIISLYYYEELNMKEIAQVLGISLSRVSQIHGKTLLKLKNFLAK 233 >UniRef50_B0P9X1 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9X1_9FIRM Length = 257 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 138/245 (56%), Gaps = 22/245 (8%) Query: 4 LYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 LY G + ++ + Y + + A+ + +++++ G I L+++V+R+D Sbjct: 17 LYKETGSQELRNRIVMHYSYIAKSVAIEMNNMFHKYATIEEMVNQGVIALIDSVDRFDPD 76 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 G F+TYA +++GA++D +R +DW+PR VR NA V A L +LGRN T +E+A+ Sbjct: 77 HGVKFSTYAFTKVKGAIIDYVRKQDWLPRRVRHNAIRVNNAYNDLPMKLGRNPTRSEMAK 136 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPL----------QQ 172 +L + ++ Q + + + +FSY+ L+ D Q +N L + Sbjct: 137 QLDMSEREFDQCIYEMSGESIFSYE----------SLLADGPQNQNMLWPMEGEIVNPEG 186 Query: 173 LLDSN-LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKR 231 +D+ LR+++ AI++L E+E+ VL+LYY E L +KEIG VL V E R+ Q++ + I++ Sbjct: 187 CVDAKELREQLGMAIDSLNEQERHVLSLYYYENLTMKEIGGVLGVSEQRIGQINRKLIQK 246 Query: 232 LRTKL 236 LR KL Sbjct: 247 LRNKL 251 >UniRef50_C9R9X4 RNA polymerase sigma factor n=1 Tax=Ammonifex degensii KC4 RepID=C9R9X4_AMMDK Length = 252 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 131/228 (57%), Gaps = 1/228 (0%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L +RY+PLV++ RL VRLP V L+D+ AG +GLL A+ERYD QG F +YA Sbjct: 18 SKEELVRRYLPLVKYLVGRLAVRLPPWVSLEDIEGAGILGLLAAMERYDPSQGVEFESYA 77 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RI GAMLDE+R R + + V + + E+E G +VA+ LG + A Sbjct: 78 RYRIWGAMLDEVRRWARFSRRTWQQMQAVLKVQERWEREKGCRPKVEDVAQELGWEPAQV 137 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 ++ FS +E R G S E D + ++PL++LL+ R+ EAI L Sbjct: 138 DRLGRYFAAFNSFSLEEVRSAEGRSPWEEFLADPKGQDPLEELLEKEDLGRLAEAIGRLE 197 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ER +L+L LYYQE L L+EIG VL + ESRV QLHS+A+ +LR L + Sbjct: 198 ERLQLILALYYQEGLTLREIGEVLGISESRVCQLHSRALTKLREILAE 245 >UniRef50_Q8EQV7 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis RepID=Q8EQV7_OCEIH Length = 258 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L Y+ LV + R+ LP +V DD+ G +GL +A++++D + F TYA RI Sbjct: 28 LINNYMYLVNYHTERIASHLPNNVVKDDIRSFGILGLYDALKKFDPSRDLKFDTYASFRI 87 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 +G+++D LR DW+PRS+R ++V QA+ + EQ R A +E+A G+ + + Sbjct: 88 KGSIMDGLRKEDWLPRSIREKTKKVEQAMEEYEQSYQREANSSEIANLTGMTTEEVETTM 147 Query: 136 LDTNNSQLFSYDEWREEHGD----SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 D S + S +E + + D I D + P +++ L++ +++ I+ L E Sbjct: 148 KDALFSNILSIEEKPKGNSDQLKEGIGYSISDERAILPENHIVNEELKEELIQGIKLLNE 207 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +E+LV++L+Y EEL EIG V+ + SR+SQ+H ++I +L+ L K+ Sbjct: 208 KEQLVVSLFYNEELTFTEIGQVVGLTTSRISQIHKRSIFKLKKTLEKV 255 >UniRef50_Q5WFS6 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFS6_BACSK Length = 254 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 10/237 (4%) Query: 12 DKHS------LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 D+HS L + Y+PLV + R+ LP+S+ D+L GLL+A+ ++D+ + Sbjct: 13 DEHSEVAAEALIEHYMPLVAYHVQRISNGLPSSISKDELKSHALSGLLDAIAKFDSKRAL 72 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA RIRGA++D LR D +PR++R +++ Q QLEQE GR+ EVA +G Sbjct: 73 KFDTYASFRIRGAIIDGLRKEDRLPRTIRDKVKKLEQITEQLEQEKGRSVLPGEVAAAMG 132 Query: 126 IDIADYRQMLLDTNNSQLFSYDE--WREEHGD--SIELVTDDHQRENPLQQLLDSNLRQR 181 + + + + S S D+ +H D ++ +D Q P +L++ + R+ Sbjct: 133 LPEKEIEALKREQFASHTLSLDDVMHMNDHLDPSAVAYQFEDEQAIMPDDKLVEEDTRKE 192 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + E I+ L E+LV+ L Y EEL+L EIG +L + SR+SQ+H++AI +LR L K Sbjct: 193 LAEMIKELGRNEQLVIQLSYYEELSLTEIGRILNLSTSRISQIHARAIAKLRKGLQK 249 >UniRef50_C2ED95 RNA polymerase sigma factor n=5 Tax=Lactobacillales RepID=C2ED95_9LACO Length = 250 Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 18/225 (8%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 +Y+PLV A R+ ++ E DDL G IGL++A++++D+ + F YA RIRGA Sbjct: 25 KYLPLVERVANRISIK-NTEYEYDDLYNIGVIGLIDAMQKFDSSKKVPFENYAAIRIRGA 83 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI------DIADYR 132 ++DE+R + R N QA +LEQE+ R T+ E+ +++GI DI D Sbjct: 84 IIDEVRRHSKISRYKMGNVNSFYQAKQELEQEMKREVTDKEIMKKMGITSSQLGDIYDSI 143 Query: 133 QMLLDTN-NSQLFSYDEWREEHGDSIELVTD---DHQRENPLQQLLDSNLRQRVMEAIET 188 Q L + S L+S + D +V D D + + ++L+ ++ ++EAI+ Sbjct: 144 QYLSSVSLESTLYS-------NNDETVMVQDTLRDSKAPSGEKELMKQERKKELIEAIKR 196 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L ERE+LVL+LYY+E+ LKEI A+L+V +RVSQ+H +AI ++R Sbjct: 197 LSEREQLVLSLYYEEDATLKEIAAILDVSIARVSQIHGRAIAKIR 241 >UniRef50_D0MG99 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MG99_RHOM4 Length = 253 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 1/220 (0%) Query: 21 VPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML 80 VPLVR RL V V +DL G +GLL A++ YD +GT F +YA RIRGA++ Sbjct: 29 VPLVRSMVGRLSVPDHPLVTREDLENVGLMGLLQALDSYDPERGTPFVSYAYGRIRGALV 88 Query: 81 DELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNN 140 D LRS D +PR RR E+ QAI L Q LG + +VA+ LGI + +Y +L D Sbjct: 89 DYLRSIDALPRERRRKLAELQQAIETLRQTLGGEPEDQDVADYLGISLQEYYTLLTDAQR 148 Query: 141 SQLFSYDEWREEHGDSIELVT-DDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTL 199 S E E GD L T + E L+ + ++L + V + I+ LPERE+ +L L Sbjct: 149 RFALSLQETVGEDGDQSVLETIPNEDAEKQLEDIDRASLIEYVTKLIQRLPEREQNILAL 208 Query: 200 YYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 YY E L L+EI +L + E+R+SQ+ + + LRT+L ++ Sbjct: 209 YYYENLTLREIAQLLGLTEARISQILGKTLLTLRTELQRV 248 >UniRef50_Q3ADC4 RNA polymerase sigma factor for flagellar operon n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADC4_CARHZ Length = 254 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ L + Y+PLVR + + ++LP + +D+ G IGL+ AVE YD +G F +YA Sbjct: 24 RNELLEYYLPLVRKVSAAMSLKLPTHLSREDIEGYGIIGLIEAVETYDQNRGVKFESYAS 83 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 +IR A++DELR ++++PRSV ++V + L LG +VAE+LG+ ++D Sbjct: 84 LKIRAAIIDELRKQNFLPRSVWDKIKKVTTSEEMLLNALGEEVPVEKVAEQLGVSVSDVL 143 Query: 133 QMLLDTNNSQLFSYDEWREEHG--DSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 ++ S DE + G D + DD ++ +P + L + + EA++ L Sbjct: 144 KIKTLIALKNHLSLDEIIDPEGSVDRFAGLADD-EKYSPENKFLKRVEIEELREALKRLS 202 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +RE+L+L L+Y EEL+LKEI AVL++ SRVSQ+ S+A+ +LR L Sbjct: 203 DRERLILQLFYVEELSLKEIAAVLDISTSRVSQIASKALGKLRKLL 248 >UniRef50_D0LLA7 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLA7_HALO1 Length = 244 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 9/222 (4%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L + ++ L A R+ RLPASV LDD+ A +GL A RYD + F +A +RI Sbjct: 32 LIKEHIELALSMARRMARRLPASVCLDDIESAALLGLTEAARRYDDKRREPFMGFAAKRI 91 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGA+LD+LR D + R RR AR+VA+A E E GR AT++E+A++LG+ ++ + Sbjct: 92 RGAILDQLRRSDMLTRRGRRAARQVAEAARSFEGEHGRPATDSELADQLGVSDEEFHSVY 151 Query: 136 LDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKL 195 + + D D+ ++ DD + LR ++ A+E L +R ++ Sbjct: 152 ASVRDVTVTGVD-------DADAILPDDAA--ATFACIERQQLRAALVRALEKLDDRARV 202 Query: 196 VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 VL YYQ+ L L+EIG +L + ESRV Q+H+Q + LR +L Sbjct: 203 VLAAYYQDGLTLREIGQILGITESRVCQIHTQTLALLRDQLS 244 >UniRef50_Q254D7 DNA-directed RNA polymerase sigma 28 n=12 Tax=Chlamydiaceae RepID=Q254D7_CHLFF Length = 257 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y+ LV+ RL +P+ ++ +DL +G GL+ AVER++ + F YA+ I+ A+ Sbjct: 32 YLHLVKCVVHRLISGMPSHIKTEDLYASGVEGLVRAVERFNPEKSRRFEGYALFLIKAAI 91 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +D+LR +DWVPRSV + A +++ A+ L Q LGR T+ ++ E I + + Sbjct: 92 IDDLRKQDWVPRSVHQKANKLSDAMDTLRQSLGREPTDGDLCEYFQISQQELSGWFVSAR 151 Query: 140 NSQLFSYDEWRE-----EHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 + + S +E R E G ++E D + E + + AIE L E+E+ Sbjct: 152 PALIISLNEERPLLSDGESGVALEERIPDERAETGYDIVDRKEFSSFLANAIEGLEEKER 211 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 V+ LYY EEL LKEIG +L V ESRVSQ+HS+A+ +LR L Sbjct: 212 KVMALYYYEELVLKEIGKILGVSESRVSQIHSKALIKLRASLSAF 256 >UniRef50_A6F9N5 RNA polymerase sigma factor n=1 Tax=Moritella sp. PE36 RepID=A6F9N5_9GAMM Length = 238 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 136/239 (56%), Gaps = 11/239 (4%) Query: 2 NSLYTAEG-VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 NS + A V+D+++L +Y+ LV+ L+ ++ +DL+Q G +GLL A+ RY Sbjct: 9 NSSFNARASVVDENALLIKYMHLVKRAVTHLRSQIGTLQSYEDLVQIGTMGLLEAIRRYG 68 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 + F +YA QRIRG +LDELR +DW PR R+ + A L + LGR A E E+ Sbjct: 69 SEPDYGFESYAFQRIRGEILDELRRQDWRPRQARQQGHSLNHARRTLSRTLGREANEKEL 128 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 L ID + M+ D+ + ++ S DE + D +TD EN Q D +++ Sbjct: 129 MAFLEIDAEQLQDMIFDSVSEEMQSLDELLQAGTD----ITD----ENSDIQKFD--IKR 178 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + + + L +R++L+LTLYYQ ELN+KEI L++ ESRV QLH A+K+L + L L Sbjct: 179 SLKQTLSLLDQRDQLLLTLYYQYELNMKEISLTLKITESRVCQLHQLALKKLHSHLTNL 237 >UniRef50_Q2IQQ1 Sigma 28 (Flagella/Sporulation) n=3 Tax=Anaeromyxobacter RepID=Q2IQQ1_ANADE Length = 232 Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 115/220 (52%), Gaps = 13/220 (5%) Query: 15 SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQR 74 +L +R+ L+ A RL R +VE DL AG +GLL A RYDA Q F T+A R Sbjct: 21 ALLRRHATLLDRCARRLAARTGHAVEPGDLWSAGAMGLLEAARRYDASQDVRFETFAEHR 80 Query: 75 IRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 +RGAMLDELR D +PR +R +A V A +LEQ LGR E+AE G+ ++ Sbjct: 81 VRGAMLDELRRMDHLPRRLRADADRVLAARARLEQALGREPDPVEIAEAAGLPAEQVGEL 140 Query: 135 LLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 LL L S E+ V D + L + R + A+ LPER + Sbjct: 141 LL------LASPPVPVEDDVAPAPAVPAD-------EALGAAERRGALARAVAALPERLQ 187 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++L LYY E L +EI VL V E RV QLHS+A KRLR Sbjct: 188 VLLALYYDEALTYREIAKVLGVSEPRVCQLHSEAAKRLRA 227 >UniRef50_C1SNG1 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNG1_9BACT Length = 245 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 121/217 (55%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 +K + ++P ++ LR+ LP +V++DDL + +GL+ ++ER+D + F T+ Sbjct: 17 EKDKIILEFMPRIKSWVLRISTTLPDTVDVDDLYSSACLGLIESLERFDKDRNVNFYTFG 76 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 +RI+GA+LD LR+ D++PR+VR +++ + IG + G T E+ E + Sbjct: 77 ERRIKGAILDTLRNLDYLPRNVRTRLKQLERHIGNHYRTAGEKPTVEEIIENSDFSEQEV 136 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 ++L N ++ S DE GD+ + P + L + L + E IE L E Sbjct: 137 YRLLELMENDKILSLDESVGPEGDTSLVDFIKSTGLTPEDEALKTRLVDTLGEEIENLSE 196 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQA 228 +EK V++LYY EEL +KEI VL + ESRVSQ+HS A Sbjct: 197 KEKYVVSLYYYEELTMKEIAMVLGITESRVSQIHSAA 233 >UniRef50_A3V254 RNA polymerase sigma factor n=3 Tax=Rhodobacterales RepID=A3V254_9RHOB Length = 239 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 122/219 (55%), Gaps = 15/219 (6%) Query: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDE 82 LVR + + R+ + VE DDLLQ G IGL+ A +RY +G +F YAV R+RGA+ D Sbjct: 21 LVRRVSHHIHSRVRSIVEFDDLLQVGLIGLIEAAQRYTRREGVSFENYAVLRVRGAIYDY 80 Query: 83 LRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQ 142 LR + R + V A +L Q+LGR T E+AE + + I + N+S Sbjct: 81 LRKNSNLGRKTIATTKVVKFAQAELSQKLGRAPTRVELAEAVSMTIGELNAWEQSLNSSY 140 Query: 143 LFS----YDEWREEHGDSIELVTDDHQRENPLQQLLD-SNLRQRVMEAIETLPEREKLVL 197 S YDE+ S+ + E P +QLLD L+ ++ A+++LP+RE LVL Sbjct: 141 QNSLQDEYDEY------SMWFSAE----EPPAEQLLDRGRLKDALLIALKSLPQREALVL 190 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LYY EELN+ EI A+LEV RVSQL S A K+++ L Sbjct: 191 QLYYVEELNIYEIAAILEVTPGRVSQLKSMAFKKMQPLL 229 >UniRef50_Q67K31 RNA polymerase sigma factor related to flagellar biosynthesis n=1 Tax=Symbiobacterium thermophilum RepID=Q67K31_SYMTH Length = 253 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 133/230 (57%), Gaps = 4/230 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + +L Q Y+ LVR+ A RL V +P V+ D+ G GLL A+ RYD +G F T+A+ Sbjct: 19 RDALVQHYLWLVRYVAGRLMVGMPDHVDQGDVEGHGCFGLLEAIARYDPDRGVRFETFAI 78 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 IRGA L+ LR+ W P ++RR R++ + +L LGR + E+AE++GI + + Sbjct: 79 PWIRGACLEGLRAMQWAP-ALRRRVRQLERVRDELMAVLGREPSAAELAEQMGISVEEAE 137 Query: 133 QMLLDTNNSQLFSYDEWRE-EHGDSIELV--TDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + L + + S DE + G++ L D + +P + + R+ + AI +L Sbjct: 138 RRLQEAGTLAVLSLDEALAFDDGETTALADRVADEEAVDPELESQRAERREVLARAIASL 197 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 E+E+LV+ L YQE L KE+ +L + ++R+SQ+HS+AI RLR KL ++ Sbjct: 198 TEQEQLVIALIYQEGLIAKEVSEILGLSQARISQVHSKAILRLRGKLSRM 247 >UniRef50_A0Q044 RNA polymerase sigma factor n=30 Tax=Clostridium RepID=A0Q044_CLONN Length = 242 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 130/233 (55%), Gaps = 8/233 (3%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 +K + ++Y+PLV++ A R+ + +E +DLL G +GL++A ++D +G F+TYA Sbjct: 9 NKEEIVKKYIPLVKYIASRVIIGKTKYIEFEDLLGYGMLGLMDAFNKFDKSKGMKFSTYA 68 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATE---TEVAERLGIDI 128 RIRG+M+DE+R + + + AI L++ RN E ++A+ L + + Sbjct: 69 SIRIRGSMIDEIRKNSPISKGAMDKLNKYNSAIESLQK---RNLAEPNIKDIAKELDMTV 125 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELV--TDDHQRENPLQQLLDSNLRQRVMEAI 186 ++ N + S ++ D I L+ +D NP ++ + + + + + Sbjct: 126 KQVGEIENFINYISIVSLEDLIFSEDDDISLMGTIEDINSPNPEEEYENDEKLEYLSKGL 185 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + L E+++ VL+LYY EE+ LKEIG +L V ESRV QLHS+AI LR +L KL Sbjct: 186 DMLNEKDRTVLSLYYYEEMTLKEIGKILGVSESRVCQLHSRAIVHLRKELAKL 238 >UniRef50_C5EM23 DNA-directed RNA polymerase specialized sigma subunit n=4 Tax=Clostridiales RepID=C5EM23_9FIRM Length = 244 Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ L Y+P+VR A++L+ + +E +DL G + L+ ++RYD +G F TYA Sbjct: 13 RNKLVLHYLPIVRSAAVQLRTMAGSLLEQEDLTDQGVLALMECLDRYDPGKGARFETYAF 72 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 R+RGAM+D +RS+DWVP R ++V +A L E +VA L + + Sbjct: 73 VRVRGAMIDYIRSQDWVPHRARNFQKKVDEAFSILSHEKMGEPDVKDVAGYLDMPVEKVE 132 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSI---ELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + N++ + S++ ++ EL D + P + L + + + AI+ L Sbjct: 133 NHIKYMNHASVLSFEAALQDMTAIFAKGELEAGDMDGK-PEESLFYREMMEMLTAAIDGL 191 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 E+E+LV+TLYY EEL EI V+ +G+SRV Q+H++AI++L++ L Sbjct: 192 GEKERLVITLYYYEELKYSEIAEVMGIGQSRVCQIHTKAIRKLKSSL 238 >UniRef50_B4U959 RNA polymerase sigma factor n=3 Tax=Aquificaceae RepID=B4U959_HYDS0 Length = 245 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 128/227 (56%), Gaps = 19/227 (8%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y+PLV+ ++ LP SV+ +DL+ G IGL+NA++ D L+ +Y R++GA+ Sbjct: 24 YIPLVKKICGKMSRNLPPSVDYNDLVSNGIIGLINAIDHLDELKNPE--SYIKIRVKGAI 81 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 D LRS D+ R++R ++ + I + E R T+ E++ LG + +Y+ L + Sbjct: 82 YDYLRSLDFGSRNIRDKEHKIKEIIRTFQNEYQREPTDEEISSILGESLEEYQNSLYKIS 141 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQR----------ENPLQQLLDSNLRQRVMEAIETL 189 FSY + E D + +T++++ E P + + S+L +++ EAI+ L Sbjct: 142 ----FSYLQSLE---DMVYKITEENESSYDNFVISSIETPEEYAVKSDLAEKLKEAIDKL 194 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 EREKLVL L + EE +KE+ +L V SRVSQ+ SQA+++LR L Sbjct: 195 EEREKLVLQLLFYEEFGIKEVAEILNVSLSRVSQIKSQALEKLRKHL 241 >UniRef50_Q6LW23 RNA polymerase sigma factor n=2 Tax=Vibrionaceae RepID=Q6LW23_PHOPR Length = 251 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 11/223 (4%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L ++ LV+ L ++ + L+D+ Q G + LL+ + RY + AVQRI Sbjct: 31 LVNKHASLVKRVVRHLTAQVTTVMSLEDMEQIGLMALLDVIRRYSDENDASLERLAVQRI 90 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGA+LDELR DW R R+ + E+ L ++LGR T+ EVA L I++ D +Q Sbjct: 91 RGAILDELRRMDWRSRRSRQKSHELRDTERALGRQLGRMPTDQEVAAELDIELGDVKQRR 150 Query: 136 LDTNNSQLFSYDEWRE--EHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 +DT L S D +E E + + ++R L++ + +A+ L +RE Sbjct: 151 VDTQAESLTSMDALQEDGEQFFGLSFQCNSYER---------VALKKAMAQALARLSKRE 201 Query: 194 KLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +++L+ YY+ E+NLKEIG V E+ E+RVSQ+H +A+K L + L Sbjct: 202 QVMLSFYYEHEMNLKEIGLVFELTEARVSQIHKKALKSLNSML 244 >UniRef50_Q03474 RNA polymerase sigma factor for flagellar operon n=17 Tax=Vibrionaceae RepID=LAFS_VIBPA Length = 242 Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 T +D+++L QR+ +V+ +L+V + ++D+ Q G I L+ A RY + T Sbjct: 18 TPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDT 77 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F +AV R+RGA+LDELR DW R R+ A E+ L + LGR T++E+ + LG Sbjct: 78 HFPAFAVCRVRGAILDELRRLDWRSRKTRQQAHELNDVTRDLTRSLGRMPTDSEIIKALG 137 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 D DY ++ S D+ E DS D +++ LDS A Sbjct: 138 TDEQDYYNRQNAALAGEMQSLDQLMENSTDSHFGGQYDGMEHEHIRRSLDS--------A 189 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 + L +R++L+LTL+YQ ELNL EI VL++ R+ QLH QA+K+L Sbjct: 190 LGRLSKRDQLLLTLFYQHELNLHEIALVLDLTPPRICQLHKQALKQL 236 >UniRef50_A3PKA6 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=6 Tax=Bacteria RepID=A3PKA6_RHOS1 Length = 239 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 AE L + ++ LVR A L R+ VE+DDL+Q G +GL++A RY+ +G + Sbjct: 8 AEQTQTPERLVRAHMDLVRRIAWNLHARIGRKVEIDDLIQVGYMGLVDASRRYEPREGVS 67 Query: 67 FTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 F YA RIRG+++D LRS + R+ ++V A+ +LE L R EVA L + Sbjct: 68 FAAYAAIRIRGSIMDFLRSNSALCRTTILMQQKVKAAVQRLEGRLMRAPETPEVAAELSM 127 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + +Y+ L SQ S DE ++ E D E+ LQ S +R + +A+ Sbjct: 128 PVGEYQDWLAQFAGSQTASLDEVYDDQSALFE--GHDPSAEDRLQA---SQMRGLLRQAL 182 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +PERE L+L L + EELN+ E+G +L V RVSQ+ AI+RLR Sbjct: 183 GRMPEREALLLQLIFVEELNVYEVGEILGVTTGRVSQIKKAAIERLR 229 >UniRef50_B0MPC6 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPC6_9FIRM Length = 251 Score = 122 bits (307), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 7/219 (3%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y+ LV+ A+ ++ E DD++ G I L+ A++ +D + F TYA RI+GA+ Sbjct: 32 YMDLVKMIAVSMRNIYTGYAESDDIINEGVIALMAAIDGFDPEKNVKFETYAGIRIKGAV 91 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +D LR D VPR++R+ ++++ +L EL R T+ E+AE + + A +++ +T Sbjct: 92 IDYLRKLDRVPRTLRKLSKQLDDNFARLNSELCRTPTDEELAESMNMTTAQLSKLMANTA 151 Query: 140 NSQLFSYDE--WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL 197 S++E + + ++I E ++ + +Q + +A+ TLPE+EK V+ Sbjct: 152 GMITLSFEELLYEDNLDENI-----SASSETADAKMYEREKKQVIADAVATLPEKEKQVV 206 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 T+YY E L EI V+ + +SRV Q+HS+A+ L+ KL Sbjct: 207 TMYYYERLKYSEIAKVMSITQSRVCQIHSKAMLTLKNKL 245 >UniRef50_A5V5T0 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 Tax=Sphingomonas RepID=A5V5T0_SPHWW Length = 242 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 6/217 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++ LVR A + R+ +++++DL+Q G I L+ A Y+ +G AF+TYA R+RGAM Sbjct: 28 HMQLVRKIAWHVHGRVSTAIDVEDLIQIGMIALVEAANGYED-RGHAFSTYASMRVRGAM 86 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +D LR + + RS R + A E++ GR+ +E+E+A+ LG+D A + +L +T Sbjct: 87 IDHLRRQAALTRSAMAKRRALLTAKADFEKKHGRSPSESELAQALGLDGAAFHALLDETA 146 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTL 199 + S DE + D D +R + Q + L + E I LPERE +VL L Sbjct: 147 ATYHESIDEV---YSDQSMWFADVEERVD--QTIEREELAGALAEHISELPEREAMVLQL 201 Query: 200 YYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 Y+ EE+NL+EIG L +G +RV Q+ A+ +LR L Sbjct: 202 YFVEEMNLEEIGQTLGIGAARVCQIKKAALDKLRVSL 238 >UniRef50_A2SBS3 RNA polymerase sigma factor for flagellar operon n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SBS3_METPP Length = 265 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 123/226 (54%), Gaps = 17/226 (7%) Query: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDE 82 LVR A R++ RLPA+VE+D+LLQAG IGL A+ R++ G +F TYA +RI GAMLD Sbjct: 42 LVRRIAKRMRARLPANVEMDELLQAGLIGLNEAITRFEESFGASFDTYASRRIEGAMLDS 101 Query: 83 LRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLD----- 137 LR+ D + R R + R + A+ LE L R EVA LG +A Q L++ Sbjct: 102 LRAADTLSRDARAHQRAIRAAVQALEHRLLRPPRAMEVASELGWSLARLHQRLVEAGAAG 161 Query: 138 --TNNSQLFSYDEWREEHG--DSIELVTDDHQRENPLQQLLDSNLRQRVM---EAIETLP 190 ++ L + G D + DDH +PL L RQR A +TL Sbjct: 162 QRAGDAPLDGLADEASARGAEDDLHATADDH--ADPLAAL---QRRQRTTALNAAFDTLE 216 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 ERE+L++ + Y+ L+ ++ L V SRVSQ+H+ +++L+ +L Sbjct: 217 EREQLMMKMIYERGLDHQDAAESLGVSPSRVSQMHAVVVQKLKRRL 262 >UniRef50_A7GZX8 RNA polymerase sigma factor n=20 Tax=Epsilonproteobacteria RepID=A7GZX8_CAMC5 Length = 234 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 11/219 (5%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 +Y+P +R A RL+ RLP+S++++DL+ G ++ +YD Q +F Y +RI GA Sbjct: 26 QYMPALRAMAFRLKERLPSSIDVNDLIGVGVEEMIKLSRKYDKEQNDSFWGYGKKRIYGA 85 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 MLD LR D + R+ R+ + + AI E + +A++LG DI R+ + Sbjct: 86 MLDYLRGLDIMSRTNRKLVKAINSAIDAYFNEFEEEPDDEYLAKKLGEDIEKIREARGVS 145 Query: 139 NNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 + + D D +EL + + N Q + +L Q++ +E ER+++V+ Sbjct: 146 SIITVLPID-------DQMELFS----QHNVEQSVEKEDLIQKIEAILENFDERDQMVIQ 194 Query: 199 LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LYY EELNLKEI ++++ ESR+SQ+H + + RLR LG Sbjct: 195 LYYYEELNLKEISEIMQISESRISQIHKRLLDRLRKSLG 233 >UniRef50_C8UHE6 Predicted RNA polymerase, sigma 28 factor n=8 Tax=Gammaproteobacteria RepID=C8UHE6_ECO1A Length = 213 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 10/216 (4%) Query: 18 QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRG 77 Q Y+PLVR +L + ++ D+ Q +GLLNA+ RY L F YAV RIRG Sbjct: 2 QAYLPLVRKVVRQLAPQCNCIIDRQDMEQTALMGLLNAIRRY-GLPDEGFAGYAVHRIRG 60 Query: 78 AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLD 137 A+LDELR+ DW PR +R+ ++ I + ++LG +E+A GI DY + Sbjct: 61 AILDELRALDWRPRQLRQKYHQMKDLIRETRKKLGHEPEWSELAVE-GISHEDYLEYQQL 119 Query: 138 TNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL 197 L S DE G I LV + + + QQ+L +A+ L E+E+L+L Sbjct: 120 EGAETLASLDELLNGEGPGIPLVGRELEDQFVTQQMLQ--------QALSQLSEKEQLIL 171 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++YYQ E+NLKEI VL + E+R+ QL+ Q +++R Sbjct: 172 SMYYQHEMNLKEIALVLGLTEARICQLNKQIAQKIR 207 >UniRef50_A4XNP9 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 Tax=Proteobacteria RepID=A4XNP9_PSEMY Length = 244 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 121/217 (55%), Gaps = 17/217 (7%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA---FTTYAVQRI 75 +Y+PLV+ +L ++ ++ +D+ Q G +GLL + RY GT F +A RI Sbjct: 32 QYLPLVKRIVSQLALQANQVLDREDMEQIGLMGLLECLRRY----GTPDEQFGRFAALRI 87 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGA+LDELR +DW PR VR+ + AI QL ++LGR E E+ GID Y++ L Sbjct: 88 RGAILDELRRQDWRPRQVRQQTHRIRDAIRQLARQLGRVPQEEEILAAAGIDAKTYQEFL 147 Query: 136 LDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM-EAIETLPEREK 194 + S DE + + V E + L++R++ +A+ L ERE+ Sbjct: 148 QADACEAIESLDELLQSGHEG--FVCGASAVEERV-------LKERLLTQALSQLSERER 198 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKR 231 LVLTLYYQ EL+LKEI VLE+ ++RV QL QAI + Sbjct: 199 LVLTLYYQHELSLKEIALVLELSDARVCQLSKQAIAK 235 >UniRef50_C8WBU8 RNA polymerase, sigma 28 subunit, FliA/WhiG n=4 Tax=Zymomonas mobilis RepID=C8WBU8_ZYMMN Length = 195 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 113/196 (57%), Gaps = 6/196 (3%) Query: 41 LDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREV 100 ++DL+Q G + L+ A ++ +G AF TYA RIRGAM+D +R RS + + Sbjct: 1 MEDLIQIGMVALIEAANAFEN-RGFAFATYASMRIRGAMIDYMRQHAATARSSIARQKTL 59 Query: 101 AQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV 160 +A +L LGR + E+AE+L + ++YR+ N + S D+ +H + Sbjct: 60 NKAREELSATLGRRPEDAEIAEKLNMSPSEYREWADGAINIRQESLDDVYSDHSS---IF 116 Query: 161 TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESR 220 TDD+ + ++ L+ + E I+TLPERE LVL LYY EELNLKEIG VL++G +R Sbjct: 117 TDDNA--DQASEMEREALQSALAEQIKTLPEREALVLQLYYVEELNLKEIGEVLDLGTAR 174 Query: 221 VSQLHSQAIKRLRTKL 236 +SQ+ A+ LR K+ Sbjct: 175 ISQIKKSAVDHLRQKM 190 >UniRef50_Q2G3R4 Sigma 28 (Flagella/Sporulation) n=3 Tax=Sphingomonadales RepID=Q2G3R4_NOVAD Length = 244 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 11/224 (4%) Query: 18 QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRG 77 +R++P+V+ A + + +E++DL+QAG + L +R+D F YA R+RG Sbjct: 24 RRFLPMVKRLAWHVHGSGRSGIEIEDLIQAGLVALTECAQRHDGPTEDGFAAYAKLRVRG 83 Query: 78 AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI---DIADYRQM 134 AM+D +R + RS R + + L ELGR +E E+A +G+ ++AD R Sbjct: 84 AMVDLVRRSTPLSRSATERRRVLREKTATLATELGRPPSEAELARAVGLTERELADQRAA 143 Query: 135 LLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 + ++ + + DS DD R + L D+ +R V AI LPER + Sbjct: 144 ------DEPLRFEAIDDAYSDSNSAFADD--RPDSFDMLADAEMRGAVAAAIAGLPERLQ 195 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 L++ LY+ EELNL EI VL V RV QL +QAI +LR LG+ Sbjct: 196 LIIQLYFVEELNLAEIAEVLGVSIPRVHQLKAQAIDKLRMALGE 239 >UniRef50_Q5DXZ7 Lateral flagellar sigma factor 28 protein (FliA-like) n=31 Tax=Enterobacteriaceae RepID=Q5DXZ7_ECOLX Length = 238 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 10/216 (4%) Query: 18 QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRG 77 Q Y+PLVR +L + ++ D+ Q +GLLNA+ RY L F YAV RIRG Sbjct: 27 QAYLPLVRKVVRQLAPQCNCIIDRQDMEQTALMGLLNAIRRY-GLPDEGFAGYAVHRIRG 85 Query: 78 AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLD 137 A+LDELR+ DW PR +R+ ++ I + ++LG +E+A GI DY + Sbjct: 86 AILDELRALDWRPRQLRQKYHQMKDLIRETRKKLGHEPEWSELAVE-GISHEDYLEYQQL 144 Query: 138 TNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL 197 L S DE G I L + + + QQ+L A+ L E+E+L+L Sbjct: 145 EGAETLASLDELLNGEGPGIPLAGRELEDQFVTQQMLQ--------HALSLLSEKEQLIL 196 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++YYQ E+NLKEI VL + E+R+ QL+ Q +++R Sbjct: 197 SMYYQHEMNLKEIALVLGLTEARICQLNKQIAQKIR 232 >UniRef50_B1K3B9 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 Tax=Burkholderia cepacia complex RepID=B1K3B9_BURCC Length = 242 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 8/219 (3%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y PLV+ +L + ++E DL Q G +GLL A+ RY F +A+ R+RGA+ Sbjct: 31 YAPLVKRIVRKLASQAGGAMEACDLEQLGLMGLLEALRRYGE-PDDEFEHFALFRVRGAI 89 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LDELR +DW PRS R+ A + L +ELGR+ T+ EV L I +Y Q+ LD Sbjct: 90 LDELRRQDWRPRSARQGAHRLRGTERALRRELGRDPTKEEVCNALEIGDDEYEQLQLDDC 149 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTL 199 + S+D EE + E + D + LR + +A+ L RE+ ++ L Sbjct: 150 AQEFVSFDALLEEDAERYECDSSDGIEHRAM-------LRHSLEQALGVLDAREQQIIQL 202 Query: 200 YYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 YY+ +L+ EIGAVL + +RV Q++ A+ ++R +L + Sbjct: 203 YYEFDLSQAEIGAVLGLTRARVCQINKSALVKMRNRLAQ 241 >UniRef50_C7BYG3 RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) n=32 Tax=Campylobacterales RepID=C7BYG3_HELPB Length = 255 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 11/223 (4%) Query: 15 SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQR 74 +L +Y+P VR A RL+ RLP+S++ +DL+ G L+ RY++ +F YA R Sbjct: 40 ALAIQYLPAVRAMAFRLKERLPSSIDFNDLVSIGTEELIKLARRYESALNDSFWGYAKTR 99 Query: 75 IRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 + GAMLD LRS D + RS R+ + + I + E G+ ++ +A+ LG +I R+ Sbjct: 100 VNGAMLDYLRSLDVISRSNRKLIKSIDAEITKHLNEHGKEPSDAYLAQTLGENIEKIREA 159 Query: 135 LLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 ++ L D E ++IE D+ ++ ++LL + V +A+ + ERE+ Sbjct: 160 KTASDIYALVPID----EQFNAIE--QDEITKKIEAEELL-----EHVKKALNQMSEREQ 208 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 +++ LYY EELNL EI +L + ESR+SQ+ + IK++R LG Sbjct: 209 ILIQLYYFEELNLSEIKEILGITESRISQIIKEVIKKVRKSLG 251 >UniRef50_UPI0001C3122D RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3122D Length = 270 Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 10/224 (4%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 + P+V++ + +PA E++D + G L++++ERYD +G ++ RI GA+ Sbjct: 39 FAPMVKYIVYKKVREIPARCEVEDFISCGLEALIHSIERYDPEKGATLEQFSWTRIHGAV 98 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQ-----M 134 LDELR +DW PRS+RR R++ QA R + E+A LG A+ R + Sbjct: 99 LDELRRQDWAPRSLRRWERDINQAREHFIGVHSRRPSREELAGALGTTPAELRAREDEIV 158 Query: 135 LLDTN--NSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 D N+ + S DE E D+ LV++D + +P + R EA E LP R Sbjct: 159 ASDVTSLNTLVLSDDETAIERIDT--LVSED-RFADPEHHTARDQAKMRFREAFERLPRR 215 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 E+ V L Y + L L+EIG +L V ESRV Q+H Q + L+ +L Sbjct: 216 EREVAVLLYVKNLTLREIGGILGVSESRVCQIHGQLKRMLKEEL 259 >UniRef50_C2KTM3 Possible DNA-directed RNA polymerase sigma subunit D n=2 Tax=Mobiluncus mulieris RepID=C2KTM3_9ACTO Length = 455 Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 +D+ +L ++ +PLV ++ L R+P+ V+ +DL AG + L+ A + Y+ G F Y Sbjct: 8 LDRDALIEKNLPLVGYQVAELLRRVPSFVQREDLASAGSLALVQAAKSYNPETGVPFHRY 67 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 AV RIRGAMLDELR+ DW R R +++ + L GR T E+A LGI++ Sbjct: 68 AVFRIRGAMLDELRAMDWATRGSRSRTKQLEEMTAALTAAAGRAPTREELAVALGIEVGQ 127 Query: 131 YRQMLLDTNNSQLFSYD-EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 LD + ++ S D + E+ SIE+V D NP +L + A++ L Sbjct: 128 VEAAQLDASR-RMVSIDVSYSEDDPRSIEIVDDGL---NPEDTVLTDERLVYLKAAVKAL 183 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 P+R + V+ + EE ++ E+ A L V +SRVSQL ++A+ +R Sbjct: 184 PQRLRYVVEQVFFEEKSVNEVAASLGVTQSRVSQLRTEALSMIR 227 >UniRef50_A0LWJ4 RNA polymerase, sigma 28 subunit n=3 Tax=Actinomycetales RepID=A0LWJ4_ACIC1 Length = 297 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 116/218 (53%), Gaps = 3/218 (1%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L + ++PLV + +LP V DDL AG + L A YD +G F +A RI Sbjct: 24 LVKDHLPLVGYLVAETASKLPGHVNRDDLTSAGMMALAQAARTYDPSRGVPFARFATVRI 83 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 RGA++DELRS DW RSVR AR+ A A +L LGR T+ E+AE LG+ + + Sbjct: 84 RGAIIDELRSHDWASRSVRVKARQRAAAEEELAAVLGRLPTQAELAEHLGVSVDELASTE 143 Query: 136 LDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKL 195 D + + + S + + ++E + HQ P LL+ +++A+ LP R + Sbjct: 144 GDVHRAVVLSLQGFAD--AGTLEGML-PHQDPGPEDVLLNRERVNYLLDAVAALPPRLRT 200 Query: 196 VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 V+ Y+ +E + E+ L V ESR+SQ+ ++A+ LR Sbjct: 201 VVEGYFFQERPMAELAEELGVTESRISQMRAEALSLLR 238 >UniRef50_C2BUJ1 Possible DNA-directed RNA polymerase sigma subunit D n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BUJ1_9ACTO Length = 433 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 15/236 (6%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G ++++ L + +PLV ++ L R+P+ V+ +DL AG + L+ A YD+ G F Sbjct: 6 GEVNRNELIENNLPLVGYQVAELLRRVPSFVQREDLASAGSLALVQAANSYDSATGVPFH 65 Query: 69 TYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 YA+ RIRGAMLDELRS DW R R+ +++ + L GR T+ E+A LG+D+ Sbjct: 66 RYAIYRIRGAMLDELRSMDWATRGARQRTKQLEEMTSTLTAAAGRAPTKEELASALGVDV 125 Query: 129 ADYRQMLLD------TNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 D + ++ + S DE S+EL + +P LLD + Sbjct: 126 ESVESAQQDAARRVVSMDAPVGSEDER------SLEL---PDESPSPEDTLLDDERLVYL 176 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++ LP+R + V+ + EE ++++ L V +SRVSQL S+A+ +R + + Sbjct: 177 HASVRALPQRLRYVVEQVFFEERPIQDVADELGVTQSRVSQLRSEALTLMREGMNR 232 >UniRef50_Q1GP15 RNA polymerase, sigma 28 subunit n=1 Tax=Sphingopyxis alaskensis RepID=Q1GP15_SPHAL Length = 248 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 116/218 (53%), Gaps = 6/218 (2%) Query: 15 SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQR 74 +L Y PLVR A ++ R+ + ELDDL+Q G I L+ A Y+ +G AF TYA R Sbjct: 28 ALVTEYAPLVRKIAWQVFSRVSRTSELDDLIQTGLIALIEASRHYEE-RGFAFATYASTR 86 Query: 75 IRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 IRGAM+D+LR V RS A+ + LEQ+L R T E+A L + DY + Sbjct: 87 IRGAMIDQLRREADVGRSAMVAAKRLQATRAALEQQLLRAPTAAEMAVALDMAAEDYFAL 146 Query: 135 LLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 + + + S DE + G + D + Q+ L LRQ + L ERE+ Sbjct: 147 ERNATHGRSTSLDEL-TDIGAFLAADEDALADDRCEQEDLMGALRQ----CVGRLSEREQ 201 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 LVL LY+ EELNL EIG L+V +R+ Q+ +A+ ++ Sbjct: 202 LVLQLYFFEELNLHEIGLTLDVSAARICQIKREAMIKV 239 >UniRef50_C7R0L3 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily n=2 Tax=Micrococcineae RepID=C7R0L3_JONDD Length = 348 Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 14/215 (6%) Query: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDE 82 LV + + VRLP+ V D+L AG L+ A +D G F +A RI+GA++DE Sbjct: 68 LVGYHVNDMLVRLPSHVTRDELSSAGQFALVQAARNFDPSSGVPFARFAAIRIKGALVDE 127 Query: 83 LRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI---DIADYRQMLLDTN 139 LRS DWV R VR+ R++ Q L LGR T E+A LG+ DI D R D Sbjct: 128 LRSMDWVSRGVRKKIRDLNQVSDTLTATLGRTPTRQELATALGVPLSDIDDAR----DQA 183 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQRE-NPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 +++ S++ + G E++ RE P L+ S + A+ LPER + ++ Sbjct: 184 ATKVLSFEGY---DGALAEVLP---TREVGPEAALIASEQIVYLKSAVSALPERLRAIVE 237 Query: 199 LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + EE ++ EI L V +SRVSQL ++A+ LR Sbjct: 238 QIFFEEKSVTEIAESLGVTQSRVSQLRAEAMVLLR 272 >UniRef50_Q2RZF2 RNA polymerase sigma-28 factor n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZF2_SALRD Length = 248 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 7/219 (3%) Query: 21 VPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML 80 +PLVR ++ V +DL G +GLL A++ YD Q F T+A +RIRG ++ Sbjct: 29 LPLVRSIIGKISVPDHLLAAHEDLESVGIVGLLEALDNYDPEQAQ-FATHAYRRIRGNII 87 Query: 81 DELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNN 140 D LRS D + R R+ V +A+ L Q LG ++ +VA+ +G+ + +Y +L D Sbjct: 88 DYLRSIDVLSREKRKKMGAVQEALSSLRQMLGEEPSDEDVADYMGMAVEEYHDLLRDAQC 147 Query: 141 SQLFSYDEWREEHGDS---IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL 197 FS R D ++++ D E +Q ++ ++ + + I+TLPER++ +L Sbjct: 148 R--FSLSLSRPSEDDDHTMLDVLPSDDGTEG-FEQFEKASTQKHLEDLIQTLPERQQTIL 204 Query: 198 TLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LYY E+L L+EIG VL++ +R+SQL + L++K Sbjct: 205 GLYYTEDLTLQEIGEVLDLSAARISQLLGKIQLTLQSKF 243 >UniRef50_A8U5V7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7 RepID=A8U5V7_9LACT Length = 238 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 +Y+PLV R+ ++ + + DDL G IGL++A+E++D + F YA RI+G Sbjct: 13 KYLPLVEKIVNRIDIK-RSEYDRDDLYNIGVIGLMDALEKFDKSKKVPFEGYAYIRIKGT 71 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 ++DE+R V R+ E + +LE EL R TE E+ L ID ++ Sbjct: 72 IIDEIRKTAPVSRTRMGKLNEYYRGKEKLEAELMRTPTEKEICAELKIDEKSLAKIHETV 131 Query: 139 NNSQLFSYDE-WREEHGDSIELVT--DDHQRENPLQQLLDSNLRQRVMEAIETLPEREKL 195 +N S ++ + G+SIEL+ +D LLD + + + + L +RE+ Sbjct: 132 HNLASVSLEKVMFSDDGNSIELLDFLEDTHETGSEDTLLDKERQHLLTKHVGQLDKREQT 191 Query: 196 VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +L L Y EEL+LKEI + ++ RVSQ+H + I +L+ +G+ Sbjct: 192 ILNLIYVEELSLKEIAYIFDISVPRVSQIHGKMILKLKGSMGR 234 >UniRef50_D2S9N5 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S9N5_9ACTO Length = 333 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 5/230 (2%) Query: 12 DKHSLWQRYVPLVRH--EALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 D +L ++PL A+ ++ LPA V +DLL + L+ R+D G +F T Sbjct: 46 DVDALVTEHLPLAAFAVNAVASRISLPAHVSREDLLSCARVALVEVARRFDPSAGASFAT 105 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA+ R++GA+LDELRS DW RSVR AR A L +LGR T E+A LG+ + Sbjct: 106 YALARLQGAVLDELRSGDWASRSVRAAARRTDAAADALAIQLGRPPTREELAASLGMARS 165 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 D + +D + + + S D G S++L E+P + LL S + + EAI L Sbjct: 166 DLESLQVDVHRAVMVSIDAETGPDGASLDL---PDTGESPERALLRSERSRYLHEAIRQL 222 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 P+R V+ + +L +I A L V SRVSQ+ ++A+ L + ++ Sbjct: 223 PDRLDEVVERNFFGGESLTDIAADLGVTLSRVSQMRARALTLLHAAMSEV 272 >UniRef50_D2SFP2 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SFP2_9ACTO Length = 360 Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 9/226 (3%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L + ++PLVRH A R R DDLLQ G +GL+ A++R+D +G F ++AV I Sbjct: 140 LVEEHLPLVRHFARRFSNR---GEPFDDLLQVGTLGLIAAIDRFDPTRGVEFLSFAVPTI 196 Query: 76 RGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 G + R + W VPR ++ + A+G+L Q+ GR T +E+AE LGI A+ Sbjct: 197 TGEIKRHFRDQGWSVRVPRRLQELHLSLNAAVGELAQKNGRAPTPSELAEHLGIPRAEVL 256 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 + L N + S DE DS L + ++ L+ + R+ + + T+P R Sbjct: 257 EGLAVANAYRSSSLDERLSGEDDSPTLAATLGEEDSALEGV---EYRESLQPLLATIPAR 313 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E+ +L L + + +I A + + + VS+L SQ + +LR L K Sbjct: 314 ERRILILRFFGNMTQSQIAADIGISQMHVSRLLSQTLAKLREGLLK 359 >UniRef50_A6CQB8 Sigma factor SigD n=1 Tax=Bacillus sp. SG-1 RepID=A6CQB8_9BACI Length = 161 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/116 (41%), Positives = 74/116 (63%), Gaps = 3/116 (2%) Query: 12 DKHS---LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 D H+ L ++Y+PLV + R+ V LP +V +DL G +GLL+A+E++D + F Sbjct: 21 DPHAGDMLVKKYLPLVSYHVQRISVGLPKNVSREDLKSLGLMGLLDALEKFDPSRDLKFD 80 Query: 69 TYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 TYA R+RG+++D LR DW+PRS R A+++ I LEQEL R+ T E+A+ + Sbjct: 81 TYASFRVRGSIIDGLRKEDWLPRSTRERAKKIEAKIESLEQELLRHVTPEEIAQEM 136 >UniRef50_A0YW48 Sigma 32 (RpoH) n=5 Tax=Cyanobacteria RepID=A0YW48_9CYAN Length = 304 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 24/227 (10%) Query: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDE 82 LVR E + P S DDL Q G IGL+ A+ER+D +G AF+++AV IRG +L Sbjct: 82 LVRQEVHHWVKKCPESY--DDLFQIGCIGLIQAIERFDLTKGCAFSSFAVPYIRGEILHY 139 Query: 83 LRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LR + VPR + +E A+ + L+++L R T+ E+A LGI I + Q+ L Sbjct: 140 LRDKSLLIRVPRRCSQLKQEAAKLVILLQEKLHRKPTDLEIANSLGISIEKWNQVKLTVK 199 Query: 140 NSQLFSY-----DEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR----VMEAIETLP 190 NS + S DE+ E+H EL+ D NP ++++ Q + A+ L Sbjct: 200 NSSVLSLDIPLNDEFNEKHCLG-ELIVDS----NP-----NASMSQEEKIDLEMALLKLK 249 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + +L L + + L KE+ + + VS+ Q+++ L+ L Sbjct: 250 AENRDILELVFFKNLTYKEVAKQMNISVMTVSRRLKQSLRDLKIMLN 296 >UniRef50_B2V6R4 RNA polymerase sigma factor n=2 Tax=Sulfurihydrogenibium RepID=B2V6R4_SULSY Length = 213 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 30/227 (13%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLP-ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K + + Y+ LV+ A ++ RLP +E DDL+Q G +GLL A+E Y+ +G F+TYA Sbjct: 8 KKQIVEEYIGLVKKVASKIFYRLPDCEIEFDDLVQTGIVGLLKALENYNEDKGK-FSTYA 66 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRG +LD LR +D +P++ ++ E A++LG Sbjct: 67 YIRIRGEILDFLRQQDIMPKT-------------------EKDKITIEYADKLG------ 101 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVT-DDHQRENPLQQLLDSNLRQRVMEAIET-L 189 L + N+ + S D+ E G+ + + + P ++ L +++ EAI+ L Sbjct: 102 -DELPISKNAIMLSLDKIISEDGEEFSFIDLFASKSKTPEEEYAQKELLEKISEAIDKYL 160 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + EK ++ Y EE + KEI ++ + R+SQL S+A+++L+ L Sbjct: 161 DDIEKKIIQYLYFEEKDPKEISEIMNISLGRISQLKSRAVEKLKKIL 207 >UniRef50_D2KX62 Flagellar biosynthesis sigma factor (Fragment) n=2 Tax=Pseudomonas syringae group RepID=D2KX62_PSESZ Length = 115 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/112 (50%), Positives = 71/112 (63%), Gaps = 2/112 (1%) Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE-NPLQQLLDSNLRQRVMEAI 186 + DY +L DT S+LFS+D+ ++ GD L D P + L D + + +AI Sbjct: 1 LDDYYGILNDTLGSRLFSFDDLLQD-GDHEGLHEDGASGSLEPSRDLEDERFQAALADAI 59 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 LPERE+LVL LYY EELNLKEIG VL V ESRVSQLHSQ RLR +LG+ Sbjct: 60 ANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGE 111 >UniRef50_A1SDJ3 RNA polymerase sigma factor, FliA/WhiG family n=4 Tax=Nocardioides sp. JS614 RepID=A1SDJ3_NOCSJ Length = 300 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 4/230 (1%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + L +VPLV H R+P+ V+ +DL AG + L+ A +D +G F Sbjct: 24 GSAEADRLAVEHVPLVTHVVYETLARVPSYVDRNDLRSAGLLALVAAARSFDPERGVPFA 83 Query: 69 TYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 YA+ RIRGAM+DELRS DW RSVRR ARE+ +A +L LG + VA LG+ + Sbjct: 84 RYAMPRIRGAMVDELRSVDWASRSVRRRAREIEEARARLAATLGEFPDDEAVAAALGMTL 143 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + ++ + + D ++ I V + P ++ + + + +A+E Sbjct: 144 DEVNRVDSEAARGTVLPLDAGAQQGLAEILPV----REAGPEERAVHLERVRYLADAVEE 199 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 LPER +LV+ Y+ EE + E+ A L V ESRVSQ+ ++A+ LR LG+ Sbjct: 200 LPERMRLVVRGYFLEERPMAELAAELGVTESRVSQVRAEALALLRDALGE 249 >UniRef50_D0L5V1 RNA polymerase sigma-70 factor, sigma-B/F/G subfamily n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L5V1_GORB4 Length = 276 Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 14/229 (6%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + ++ +R +PL H A R R DDLLQ IG++NAV+R+D +G +F ++AV Sbjct: 48 RDNIIERCLPLAEHVAWRFSDR---GEPFDDLLQVARIGVVNAVDRFDGERGDSFLSFAV 104 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 + G + R W VPR + + + +A +L Q LGR+ +E+A LG+ + Sbjct: 105 PTVMGEVRRHFRDSMWAIRVPRRAKETSLSIGKATDELVQRLGRSPRPSELAAHLGLPVD 164 Query: 130 DYRQMLLDTNNSQLFSYDEWRE-EHGDSI-ELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 + LL + Q S D E + G SI + + DD R + + + LR ++ Sbjct: 165 EVIDGLLARSAYQARSIDATPEDDDGRSIRDTLGDDDARLAQIDEFV--TLRP----VLD 218 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LP+RE+ ++TL + ++ EI A + + + VS+L S+ ++ LR +L Sbjct: 219 QLPDREREIVTLRFFHAMSQSEIAARVGISQMHVSRLLSRTLETLREQL 267 >UniRef50_A6WEL7 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WEL7_KINRD Length = 326 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 14/228 (6%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L +R++PL H A R R DDL+Q IGLL A++R+D +G F YAV Sbjct: 106 REELTRRHLPLADHLAARFLGR---GEPQDDLVQVATIGLLKALDRFDPSRGVPFGAYAV 162 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 + G + R R W VPR ++ R + A L ELGR T E+AER G D Sbjct: 163 PTMLGEIKRHFRDRGWAMRVPRRIQEAGRALGDAREALTHELGRAPTVAELAERTGYDPE 222 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 D +L N +Y + G LV ++ LQ + + R+ + + L Sbjct: 223 DVVDVLESAN-----AYSTLPLDTGSPTSLVASLGADDDALQNVEN---REALRPLLAGL 274 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 P RE+ +L L + ++ +I A + + + VS+L ++ + +LR LG Sbjct: 275 PARERRILALRFVRGMSQSQIAAEVGISQMHVSRLLTRTLAQLREGLG 322 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 16/225 (7%) Query: 23 LVRHEALRLQVRLP-----ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIR- 76 L+RH LRL V + + + L DL+Q G IGL+ AVERYD G F+TYA IR Sbjct: 103 LIRHN-LRLVVSIAKRYRSSELPLIDLIQEGNIGLMTAVERYDPELGYRFSTYATFWIRQ 161 Query: 77 --GAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 G + L VP + ++ +A Q+EQ+ GR AT E+AE LGID+A Q Sbjct: 162 AIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAELLGIDVARIEQA 221 Query: 135 LLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 T + S D+ E G+ SI + D + ++ +++ L + +R+++ ++E L ERE Sbjct: 222 --RTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQIRRSLEQLTERE 279 Query: 194 KLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + VL + + ++ L EI L++ RV Q+ +A+++LR Sbjct: 280 RTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLRN 324 >UniRef50_Q1D9L6 RNA polymerase sigma factor, FliA/WhiG/SigD family n=2 Tax=Cystobacterineae RepID=Q1D9L6_MYXXD Length = 278 Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 14/223 (6%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 D+ + ++Y P VR A ++ + A +ELD+LL G IGLL A ER+D G F T+A Sbjct: 6 DRQVILEKYGPYVRSLAATVRKQFNAQLELDELLAYGQIGLLEAAERFDPKVGANFLTFA 65 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RI+GA+ D LR + S RNA +A L R A D+ D Sbjct: 66 HYRIKGAIFDGLRKMGVLRGSDARNAYVGERAAAYLGNLSDREAGAGNRGSSFDDDVNDI 125 Query: 132 RQMLLDTNNSQLFSYD-EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 + T + +F+ E + G + E + D + E L+ RV AIE LP Sbjct: 126 SDAV--TGLAMVFATSIEGADTAGYTDESLPVDIRMEQ-------EQLKTRVRAAIEKLP 176 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESR--VSQLHSQAIKR 231 E+E+ +L YY + L+E GA E+G+S+ S+LH++AI R Sbjct: 177 EKERKLLMGYYFQGRTLEEAGA--EIGQSKSWASRLHARAIDR 217 >UniRef50_C0ZT10 RNA polymerase sigma factor n=3 Tax=Rhodococcus erythropolis RepID=C0ZT10_RHOE4 Length = 272 Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 14 HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQ 73 +S+ + +PL H A R Q R +DL Q +GL+ AV+R+D +G+ F ++AV Sbjct: 49 NSIIELCLPLATHVARRYQGR---GQPFEDLEQVARVGLVQAVQRFDVDKGSDFLSFAVP 105 Query: 74 RIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 + G + R W VPRS++ + +A+ L Q LGR T E+A L I+ + Sbjct: 106 TVMGEVRKHFRDHGWSVRVPRSLQERHLALNRALTSLSQTLGRAPTVAELATELDIEPDE 165 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 Q L N+ + D G + L+ Q + + ++ + + + A+ LP Sbjct: 166 VEQGLTAGNSYRTTPLDTASAGDGSGLTLIDTLGQYDEAISRI---DNHETLRPALLALP 222 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 ERE+ ++ L + L +I + + + VS++ +Q +K+LRT++G++ Sbjct: 223 ERERTIVVLRFFGHLTQSQIAEKIGISQMHVSRILTQTLKQLRTEMGEI 271 >UniRef50_UPI00016C3B56 RNA polymerase sigma factor for flagellar operon n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3B56 Length = 247 Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 113/217 (52%), Gaps = 9/217 (4%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++PLV+H RL +P V++++L AG +GL+ A ++D + F T+A RIRGA+ Sbjct: 29 HLPLVKHVIGRLIGDVPPGVDVENLESAGVLGLVEAAAKFDPARNAQFKTFAYLRIRGAI 88 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 +DE+R +P+ V V +A L + T +A G+ + L Sbjct: 89 VDEMRRNSPLPQHVHARLALVRRACRTLPHPI----TVEAIAAATGLSEDEVTDTLSAER 144 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTL 199 ++ S+++ E G + E P ++ Q++ +AI+ L +E++ +TL Sbjct: 145 MAKTMSWEQASESTG-----LEPAGGGEEPGAEMERWESVQQLGDAIQELEPKERIAVTL 199 Query: 200 YYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 YY+E+L LKEI V+++ SRVS+L S+A L +L Sbjct: 200 YYKEDLRLKEIAEVMKLSVSRVSRLLSKATFELGERL 236 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 89.4 bits (220), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 14/223 (6%) Query: 29 LRLQVRLP-----ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAM 79 LRL V++ + + L DL+ G IGL+ AV+R+D +G +TYA Q I+ A+ Sbjct: 49 LRLVVKIAHDYANSGLPLPDLISEGNIGLMKAVDRFDPSKGGKLSTYAAWWIKQSIKRAL 108 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 ++ ++ V + A+ A+ QL + LGR+ T+ E+AE LG+ ++ Sbjct: 109 ANQSKTIRLPVHLVDKIAKMRRVAM-QLSEILGRDPTDEELAEELGMSTTKVAELRTIAI 167 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTL 199 EE G ++ + D +P Q +LD NL+ +ME + L ERE+ +L+L Sbjct: 168 RPASLDATVGEEEDGTALGELVKDESAASPDQSVLDQNLKNTIMELLPKLDERERKILSL 227 Query: 200 YY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + E++ L+EIG V R+ QL + A++++R +L K Sbjct: 228 RFGLEGNEQMTLEEIGKEFHVTRERIRQLQNIALRKIRKELEK 270 >UniRef50_Q6AGB5 RNA polymerase, sigma factor n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AGB5_LEIXX Length = 272 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 70/216 (32%), Positives = 109/216 (50%), Gaps = 29/216 (13%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++PLV + L ++ A ++ D+L AG + L A +D +G F +YA RI GA+ Sbjct: 37 HLPLVGYIVSDLCMKA-AHLDRDELASAGNLALPRA---FDPDKGVTFASYARTRISGAI 92 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 DELRS+DWV R +R+ + A L + LGR TE EVA LGI ++ L + Sbjct: 93 SDELRSKDWVSRGMRKRIKAAQSARDDLAKTLGRTPTEDEVASLLGIG----KKALAEAM 148 Query: 140 NSQL---FSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLV 196 + Q S+D+ + I +R D LR A+E LP+R +LV Sbjct: 149 HHQATGPVSFDDLAPDEAAEIT------ER--------DVFLRT----AVEALPDRLRLV 190 Query: 197 LTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 +T + EE +K++ A L + + VS S+A++ L Sbjct: 191 VTRIFCEERQVKDVAAELGITHAAVSMTKSEAVRML 226 >UniRef50_Q2JWP6 RNA polymerase sigma factor n=25 Tax=Cyanobacteria RepID=Q2JWP6_SYNJA Length = 299 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/195 (34%), Positives = 102/195 (52%), Gaps = 6/195 (3%) Query: 42 DDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNA---R 98 DDL+Q G IGL+ A+ER+D +G AF+++A+ IRG + LR + R RR A R Sbjct: 98 DDLVQVGCIGLIQAIERFDISRGLAFSSFAMPYIRGEIQHYLRDKSPTIRIPRRWATLQR 157 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 + + I +L QELGR+ +E EV E L + ++R++ L NS L S D + DS+ Sbjct: 158 QAKKVIARLRQELGRSPSEAEVREALQLTEQEWRELELAQQNSLLLSLDAPVQVEEDSVA 217 Query: 159 LV-TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVG 217 L T QR Q L R R+ A+ L ER + +L + +L KE L + Sbjct: 218 LGDTIPDQRYRSFQ--LAEEDRIRLQNALAKLEERTRQILEFVFFYDLTQKETAERLGIS 275 Query: 218 ESRVSQLHSQAIKRL 232 VS+ + ++RL Sbjct: 276 AVTVSRQVKKGLERL 290 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 23/211 (10%) Query: 41 LDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRN 96 +DL+Q G IGL+ AVE++D +G F+TYA Q ++ A+ D+ R+ VP + Sbjct: 93 FEDLIQEGNIGLMKAVEKFDPERGFRFSTYATWWIRQAVQRAVADKGRTIR-VPVHMTEK 151 Query: 97 AREVAQAIGQLEQELGRNATETEVAERLGIDIADYR----QMLLDTNNSQLFSYDEWREE 152 R+V++ +L EL R T+ E+A RL D+ D R M T+ Q S +E E Sbjct: 152 IRKVSRTFNELSLELEREPTDEEIARRLEWDVEDVRLTISAMPDATSLDQPVSSEESASE 211 Query: 153 HGDSIELVTDDHQRENP---LQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEEL 205 GD IE D+ + P L++L S L+ EAIE LPER + VL Y +E Sbjct: 212 LGDFIE---DERTSDTPDTVLKELESSQLK----EAIERLPERARYVLVRRYGLDDREPA 264 Query: 206 NLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 L E+G L++ RV QL +A + L+ + Sbjct: 265 TLAELGDELKISRERVRQLQREAERLLKAGI 295 >UniRef50_Q5YYK9 Putative sigma factor n=1 Tax=Nocardia farcinica RepID=Q5YYK9_NOCFA Length = 273 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + + R +PL + A R R VE +DLLQ +GL++AV+R+D G +F +AV Sbjct: 43 REEILHRCLPLAHNIARRFTNR---GVEFEDLLQIARLGLVHAVDRFDLEHGDSFLGFAV 99 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R W VPR ++ + + A +L +LGR T E+A LG+++ Sbjct: 100 PTIMGEVRRYFRDHGWAVRVPRRMKELHQLLGPATDRLTHQLGRQPTARELASELGVELT 159 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIEL-VTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + Q L+ N S D + L + D P LL+ + R + I Sbjct: 160 EVTQALVARNAFTTESLDGGERTGEEGGALPIADRLGAVEPCYGLLEDAMAVRPL--IAA 217 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 LPERE+ VL L + + EIG +L + +VS++ ++ + LR K Sbjct: 218 LPERERQVLILRFYDNKTQAEIGRLLGCSQMQVSRILAKTLTMLREK 264 >UniRef50_C0QYD2 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QYD2_BRAHW Length = 309 Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 117/226 (51%), Gaps = 19/226 (8%) Query: 24 VRHEALRLQVRLPAS---------VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQR 74 ++H+ ++ +RL S V D++ G IGL+ AV+R++ +G F+TY V Sbjct: 71 IQHKLVKSNLRLVISIAKRYYNSGVPFIDIIDEGNIGLIEAVKRFEYKKGFKFSTYGVWW 130 Query: 75 IRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 I+ +++ E+ S+ + P + R ++ Q L Q+LGR+ T E+++ + ID Sbjct: 131 IKQSIVKEISSKRHIIRFPMHIARLIKKSIQTSKTLTQKLGRDPTIDEISKEMKIDRKTL 190 Query: 132 RQMLLDTNNSQLFSYDE-WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 +++ T ++ S D +R + + + +D +P Q+ +LR + EA++ L Sbjct: 191 SYIMIFTQDTA--SVDSFFRNSDNNDMTSIIEDKNFPSPHQKAFMDSLRDTLTEALKCLD 248 Query: 191 EREKLVLT----LYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 E+E+ V+ LY +E L++ G L + RV Q+ +AIK+L Sbjct: 249 EKERTVIISRYGLYGKEAKTLEDTGKELNITRERVRQIQIKAIKKL 294 >UniRef50_A4ITQ5 Sigma-B general stress transcription factor n=5 Tax=Geobacillus RepID=A4ITQ5_GEOTN Length = 258 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 15/230 (6%) Query: 15 SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQR 74 +L R+ PL+ A ++ P E DL Q G + L +E YD QGT+F +YA++ Sbjct: 33 ALLVRFEPLIAAAAKKMARSRPDFYE--DLFQVGRLSFLRLLEHYDPNQGTSFESYAMKS 90 Query: 75 IRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 + G M + LR + W VPR V+ N +V +AI +L L R+ E+A LG+ + + Sbjct: 91 LIGYMKNYLRDKAWYIQVPRRVKENGSKVQKAIDELTVTLERSPNIEEIANHLGLSVEET 150 Query: 132 RQMLLDTNNSQLFSYD---EWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 ++L ++ Q S D + E+ +I E + DD L + LD + EAI Sbjct: 151 IEILAGRDHYQAISIDAPVQDGEKDATTIGEFLADDTNEVEALIERLD------LQEAIG 204 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 L E+E++V+ ++ + + L V + +S++ +AI++L+ +L Sbjct: 205 KLSEQERIVIEAVFRRGETQRSLAKRLGVSQMTISRIQKRAIEKLKRQLA 254 >UniRef50_A4TCX2 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=13 Tax=Corynebacterineae RepID=A4TCX2_MYCGI Length = 342 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 11/230 (4%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + ++ R +PL H A R + R +DL+Q +GLLNAV R+D F +AV Sbjct: 112 REAIIARCLPLADHIARRFRGRGEGH---EDLVQVARVGLLNAVNRFDVDSANDFLAFAV 168 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 + G + R W VPR ++ + A L QEL R T +E+A+ LGID Sbjct: 169 PTMMGEVRRYFRDHGWSLKVPRRLKELNVRLNAARADLTQELNRAPTPSELAKYLGIDRE 228 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDH--QRENPLQQLLDSNLRQRVMEAIE 187 + + L+ N S ++ GD L D ++ +Q+++D N Q ++ A Sbjct: 229 EVVEGLVAANAYSTRSTEQPTTFSGDGEGLSLQDTFGAPDDNIQKVIDVNTVQPLLAA-- 286 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LPER++LVL L + E+ +I + V + VS+L ++A+ LR ++G Sbjct: 287 -LPERDRLVLKLRFFEDRTQSQIAEQIGVSQMHVSRLLARALATLRDQVG 335 >UniRef50_A6Q2M3 RNA polymerase sigma factor for flagellar operon n=2 Tax=Bacteria RepID=A6Q2M3_NITSB Length = 211 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 53/231 (22%) Query: 23 LVRHEALRLQVRLP--ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML 80 LV+ A ++ +LP A++E D+L+ G IGL A+E+Y+ F+TYA +IRG +L Sbjct: 18 LVKKVASKIYFKLPKDANIEFDELVNTGTIGLYKAIEKYNR-DKAQFSTYAYIKIRGEIL 76 Query: 81 DELRSRDWVPRSVRRNAREVAQA------------IGQLEQELGRNATETEVAERLGIDI 128 D LRS VPR++R ++ + + +E+ LG E+E RL +DI Sbjct: 77 DYLRSLHIVPRTMREKIKKEKEEGQKEIPLSNLAIMMSMEKALG----ESENGPRL-MDI 131 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 L S ++ E++ + S + +++EA+++ Sbjct: 132 --------------LISNEKSPEDYA-------------------ISSEIHDKIVEALDS 158 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 L E E+ L + Y EE KEI +L + +SRVSQ+ S+AI +L++ K+ Sbjct: 159 LSESERKTLQMLYFEEREPKEISQILGISQSRVSQIKSKAIVKLKSVFKKM 209 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 113/207 (54%), Gaps = 14/207 (6%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+ G IGL+ AV+++D G F+TYAV Q I A++++ R+ VP V + R Sbjct: 84 DLINEGNIGLIQAVDKFDPELGYRFSTYAVWWIQQAIDRAIMNQGRTI-RVPVHVTKQIR 142 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-- 156 E ++A +L +E T +E+AER G + ++L + Q S D +E GD Sbjct: 143 ECSKAAHELRKEGNHEPTSSEIAERTGRAPEEVSKLL--KLSEQSLSLDNGWDEEGDKKD 200 Query: 157 -IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL----TLYYQEELNLKEIG 211 ++ + DD E P Q ++ NL + +++ +++LP++++++L L + L+++G Sbjct: 201 HLQTIDDDDVFELPEQDIVTQNLNKALIDLVDSLPDKQRVILHHRFGLLDDDPKTLEQVG 260 Query: 212 AVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++ V RV Q+ A++ LR KL + Sbjct: 261 EIVGVTRERVRQIQKSAMETLRDKLKR 287 >UniRef50_UPI0001C31D53 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D53 Length = 276 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 113/234 (48%), Gaps = 14/234 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y G + ++ ++++ L H A R R LDDL+Q +GLL AV+R+D +G Sbjct: 43 YPRSGHDARKAMVEQHLGLAHHLARRYSDR---GEPLDDLVQVASLGLLKAVDRFDPARG 99 Query: 65 TAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 +F +YAV I G + R R W VPR ++ A V A L GR+ T +++ Sbjct: 100 VSFASYAVPTILGELRRHFRDRGWAIHVPRDLKEAALRVESA---LAGHAGRSPTPSQLG 156 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYD--EWREEHGDSIELVTDDHQRENPLQQLLDSNLR 179 + G+D+ + L + S D EE G + LV + ++ L + D Sbjct: 157 KETGLDVEAVLEALEVAGAHRALSLDAPAGNEEEGTTATLVDRLGRDDDELDRAGDRATI 216 Query: 180 QRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +R+ +E RE+ +L L + E++ EIGA + V + VS+L A+ R+R Sbjct: 217 ERLASVLEP---REREILRLRFVEDMTQSEIGARVGVSQMHVSRLIRTALTRMR 267 >UniRef50_B1ZMJ2 Putative RNA polymerase, sigma 28 subunit, FliA/WhiG family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZMJ2_OPITP Length = 240 Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 93/200 (46%), Gaps = 4/200 (2%) Query: 34 RLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSV 93 RLPA V +DL AG + L+ A+ R+D Y R+RGA+LDELR D + R Sbjct: 29 RLPAHVSREDLASAGKLALVEAMLRFDG-PAEQLRGYCFARVRGALLDELRRLDPLSRHT 87 Query: 94 RRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH 153 R V +A LE+EL R T E+ G Q+ +Q S DE + + Sbjct: 88 RSQVTFVRRATAALEKELHRAPTRDEIVTATGYSHETLTQLERLAEAAQACSIDET-DAY 146 Query: 154 GDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAV 213 GD + ++ D+ + LD++ V A+ LP VL YY ++ L I Sbjct: 147 GDDLHVIEDEAACPARTAESLDAH--SSVHVALARLPANHAHVLRRYYLDDATLDVIAGE 204 Query: 214 LEVGESRVSQLHSQAIKRLR 233 L V + RV QL A K+LR Sbjct: 205 LGVSKERVRQLREAAEKKLR 224 >UniRef50_B1VUR9 RNA polymerase sigma factor n=10 Tax=Streptomyces RepID=B1VUR9_STRGG Length = 323 Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 17/231 (7%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 +++L + + LV+ A R + R S ++D++Q G IGL+ A++R++ +G F T+A+ Sbjct: 99 RNTLVELNLALVKFAAARFRSR---SEPMEDIVQVGTIGLIKAIDRFELSRGVEFPTFAM 155 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R W VPR ++ ++A+A +L Q+L R T E++ERLGI Sbjct: 156 PTIVGEIKRFFRDTSWSVRVPRRLQELRLDLAKAGDELSQQLDRAPTVAELSERLGISPE 215 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVT----DDHQRENPLQQLLDSNLRQRVMEA 185 + + + +N S D EE L +DH E + + Sbjct: 216 EVVEGMSASNAYTASSLDAKPEEDDGEGALADRIGYEDHSLEG-------IEYVESLKPL 268 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 I LP R++++L+L + + EIG L + + VS+L S+ + +LR L Sbjct: 269 IAALPARDRMILSLRFVSNMTQSEIGEELNISQMHVSRLLSRTLTKLRKGL 319 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 108/201 (53%), Gaps = 12/201 (5%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ A+E++D +G F+TYA+ Q I ++ D R+ +P + A Sbjct: 319 DLVQEGNIGLMRAIEKFDYRRGWKFSTYAIWWIKQSISRSIADHGRTIR-LPVHLHEKAA 377 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SI 157 ++ + +L ELGR + E+A+ L ID+ +++ + + S D E GD Sbjct: 378 KIDRTAARLRAELGRPPSPPELAQALDIDVRQVERLM--NMSRETVSLDLPVGEDGDVRF 435 Query: 158 ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVL----TLYYQEELNLKEIGAV 213 + +D + +P+ + L+ V +A+ LPERE+ ++ + Y +++ L+EIG Sbjct: 436 GDLVEDEKAPDPVGLADLAKLKDAVSDAVGDLPEREQTIIRMRFGIGYADQMTLEEIGQH 495 Query: 214 LEVGESRVSQLHSQAIKRLRT 234 + RV Q+ S+AI+RLR+ Sbjct: 496 FRISRERVRQVESKAIQRLRS 516 >UniRef50_B4V5M7 RNA polymerase sigma factor n=2 Tax=Streptomyces sp. Mg1 RepID=B4V5M7_9ACTO Length = 311 Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 14/207 (6%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVR 94 S ++D++Q G IGL+ A+ R+D +G FT++A+ I G + R W VPR ++ Sbjct: 80 SEPMEDIVQVGTIGLIKAINRFDPGRGVEFTSFAMPTITGEIKRFFRDTSWAVKVPRRLQ 139 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 + A+A LEQ+LGR ++ E+A RL + + + + S D +E G Sbjct: 140 ELRIDAAKAHDALEQDLGRPPSDVELAGRLHVSPEELAEGQKAAHGYSARSLDAPSQEEG 199 Query: 155 D-----SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKE 209 D + ++ + ++ L + + + LP+RE+ +L+L + +EL E Sbjct: 200 DLASYSGAPAIGEEEPAYDRIECL------ESLKPILAALPDRERTLLSLRFGQELTQAE 253 Query: 210 IGAVLEVGESRVSQLHSQAIKRLRTKL 236 IG L + + VS+L S+ + RLRT L Sbjct: 254 IGDRLGLSQMHVSRLLSRTLARLRTGL 280 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 8/198 (4%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDEL--RSRDW-VPRSVRRNARE 99 DL+Q G IGL+ AVE++D +G F+TYA IR A+ + +SR +P + + + Sbjct: 182 DLIQEGNIGLMRAVEKFDYRKGNRFSTYATWWIRQAVTRAIAEQSRTIRLPVHLSESIAQ 241 Query: 100 VAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIEL 159 + + QLEQ L R AT E+A+ LG+ + ++ML + +E G E Sbjct: 242 MRRVAYQLEQALQREATPDELADALGVSLRKVKRMLNASVQPVSLEQPIGKEGQGRVGEF 301 Query: 160 VTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLE 215 + DD E PL+Q L+ + +A+ LP+RE+ +L L Y + L+E+GA Sbjct: 302 LADDTD-EAPLEQATRMMLQDELADALSQLPDRERQILLLRYGLADGKRRTLEEVGAEFG 360 Query: 216 VGESRVSQLHSQAIKRLR 233 + R Q+ ++A++ LR Sbjct: 361 ITRERTRQIEAEAMRHLR 378 >UniRef50_A4FLE7 RNA polymerase sigma factor n=2 Tax=Saccharopolyspora erythraea RepID=A4FLE7_SACEN Length = 280 Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 26/228 (11%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++P+ H A R R + +DL Q +GL+NAV+R+D +G F +YAV I G + Sbjct: 48 HLPVAEHIARRFSHRGESQ---EDLTQVATLGLINAVDRFDPGRGVDFLSYAVPTIMGEV 104 Query: 80 LDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL 136 R W +PR ++ V+ AI +L QE GR T +E+AE LGI D L Sbjct: 105 RRHFRDTGWAVRMPRRLQELHLSVSAAIARLSQEFGRAPTPSEIAEHLGISTNDVYHGLE 164 Query: 137 DTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSN--------LRQRVMEAIET 188 N + S D EL+TD E PL + SN R+ + + Sbjct: 165 AGNAYRSASLD----------ELLTDTD--EIPLGDAIGSNDAELDEVENRETIRPLLAE 212 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 L ERE+ +L + + + +I + + + VS+L S+ + LR +L Sbjct: 213 LEERERRILVMRFFRGMTQTQIAEQVGISQMHVSRLLSRTLAWLRERL 260 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 14/200 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G GL+ AV++++ +G F+TYA Q I A+ D+ R+ VP + Sbjct: 320 DLIQEGNTGLMRAVDKFEYARGYKFSTYATWWIRQAITRAIADQSRT-IRVPVHMIDTMS 378 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI- 157 +V QL QELGR T EVA G+ + D R +L Q S D+ +H DS Sbjct: 379 KVRAVTRQLVQELGREPTPEEVARVAGLTLDDARCVL--KMARQPLSLDQPVGDHDDSYF 436 Query: 158 -ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGA 212 E + DH+ E+PL L+ ++ EA++ L RE+ +L L Y L+E+G Sbjct: 437 GEFLA-DHREEDPLYDTHQQALKHQIEEAMQGLNYREREILRLRYGLTDGYAYTLEEVGK 495 Query: 213 VLEVGESRVSQLHSQAIKRL 232 + V RV Q+ ++A+++L Sbjct: 496 IFSVTRERVRQIETKAVRKL 515 >UniRef50_B9CP17 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CP17_9ACTN Length = 276 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 27/227 (11%) Query: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDE 82 LVR A + + R LDDL+Q G IGL+ A++R+D +G FTTYA I G + Sbjct: 57 LVRFLASKFKNR---GEPLDDLIQVGTIGLIKAIDRFDPSRGLEFTTYATPTIMGEIKRH 113 Query: 83 LRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD--------- 130 R + W VPR ++ + +V Q +L EL R+ + E+A++LG+ + + Sbjct: 114 FRDKGWSVRVPRRLQELSAKVNQITDELTTELQRSPSIEEIAKKLGVSVDEVLEAMESSG 173 Query: 131 -YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 Y + L+ S + GD + D + E+ + L S+ R + +AI Sbjct: 174 AYSSVPLEGGGSSV---------DGDEAPSIIDQYITED--EALAGSDDRIVLEDAIADF 222 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 RE+ ++ + + E L EI L + + +VS+L + +KR++ K+ Sbjct: 223 SPREQEIIRMRFVEGLTQVEIAEKLGISQVQVSRLLRRTLKRIQEKI 269 >UniRef50_UPI0001B54C17 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B54C17 Length = 258 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 13/202 (6%) Query: 41 LDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNA 97 +DDL+Q +GL++AV+RYD QGT F +AV I G + R W VPR ++ Sbjct: 59 MDDLVQIATVGLIHAVDRYDPTQGTDFLAFAVPTISGELRHHFRDNSWSVRVPRRLKELN 118 Query: 98 REVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI 157 ++ A +L L R +E+A L + I D + L S D E Sbjct: 119 ATISAAREELTVRLSRAPKPSEIARHLDVPIEDVYEGLRAGQGRYGASLDNLLENSA--- 175 Query: 158 ELVTDDHQREN-PLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEV 216 H R P L + LR+ + +++LPERE+ ++ L + ++ +I + V Sbjct: 176 ------HTRFGAPDANLGQAELREALRPMLDSLPERERKIVALRFGSGMSQSDIARRVGV 229 Query: 217 GESRVSQLHSQAIKRLRTKLGK 238 + +VS+L + +K+LRT L + Sbjct: 230 SQMQVSRLLAATLKKLRTGLAE 251 >UniRef50_Q8R8A7 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A7_THETN Length = 265 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 9/203 (4%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDEL--RSRDW-VPRSVRR 95 VELDDL+Q G IGLL A+E +D +G F+TYAV I+ + + RSR +P + Sbjct: 51 VELDDLIQEGFIGLLAAIEGFDHTKGYRFSTYAVFYIKQKIQRYIWGRSRTIHLPVKTYQ 110 Query: 96 NAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD 155 +V A +LEQ G A E+AE GI + +L N + + + ++ + Sbjct: 111 KLNQVLSAQLKLEQVKGE-AFPEEIAEETGIKTEEVVNLLSLKNPTVSLNQQLYENDNTE 169 Query: 156 SIELVTDDHQRENPLQQLLD-SNLRQRVMEAIETLPEREKLVLTLYY---QEELNLKEIG 211 I+++ D+ Q EN + + LR+ + E +E LPE+E+ VL + Y + LK+I Sbjct: 170 LIDVILDE-QSENEIDRNYSLEELRKILKECLEVLPEKERSVLEMRYGLNGTPMTLKQIA 228 Query: 212 AVLEVGESRVSQLHSQAIKRLRT 234 +L + + R Q+ +A++RLR Sbjct: 229 EILNISKQRAGQIEKRALQRLRN 251 >UniRef50_A4FHE1 RNA polymerase sigma factor n=4 Tax=Actinomycetales RepID=A4FHE1_SACEN Length = 268 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 26/228 (11%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++P+ H A R + R DDL+Q +GL+ AV+R+D +G F +YAV I G + Sbjct: 43 HLPVAEHIARRFRHRGETH---DDLVQVATLGLIKAVDRFDPGRGVGFMSYAVPTIMGEV 99 Query: 80 LDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL 136 R W +PR ++ V+ I L QELGR T +E+A L + + D +Q L Sbjct: 100 RRHFRDAGWSVRMPRRMQELHLSVSAGISALSQELGRAPTPSELAAHLKLSVDDVQQGLE 159 Query: 137 DTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLL---DSNL-----RQRVMEAIET 188 N +R D + TDD PL + + DS L R+ + + Sbjct: 160 AGNA--------YRSASLDDLLTGTDD----VPLGEAIGFDDSELAEVEDRETIRPLLAE 207 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LPERE+ +L + + + EI + V + VS+L ++ + LR +L Sbjct: 208 LPERERRILVMRFFRGMTQTEIAEQVGVSQMHVSRLLTRTLSWLRERL 255 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA Q I A+ D+ R+ +P + Sbjct: 383 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQART-IRIPVHMIETIN 441 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 ++ + QL QELGR T E+A R+ I +A R++L EE GD Sbjct: 442 KLIRTSRQLVQELGREPTSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGD 501 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D Q +P + ++ NL++ + + TL RE+ V+ + + E L+E+G Sbjct: 502 FIE----DSQAVSPSEAVISVNLKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVG 557 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 +V R+ Q+ ++A+++LR Sbjct: 558 QSFQVTRERIRQIEAKALRKLR 579 >UniRef50_P06574 RNA polymerase sigma-B factor n=246 Tax=Bacillales RepID=RPSB_BACSU Length = 262 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 20/206 (9%) Query: 42 DDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAR 98 +DL Q G IGLL A++RYD + G +F +A+ I G + LR + W VPR ++ Sbjct: 57 EDLRQVGMIGLLGAIKRYDPVVGKSFEAFAIPTIIGEIKRFLRDKTWSVHVPRRIKELGP 116 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 + A+ QL E R+ E+AE L + + + + + Q S D E D Sbjct: 117 RIKMAVDQLTTETQRSPKVEEIAEFLDVSEEEVLETMEMGKSYQALSVDHSIEADSDGST 176 Query: 159 LVT--------DDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEI 210 + D ++R N QQL+ + + L +REK ++ L Y + + KE Sbjct: 177 VTILDIVGSQEDGYERVN--QQLM-------LQSVLHVLSDREKQIIDLTYIQNKSQKET 227 Query: 211 GAVLEVGESRVSQLHSQAIKRLRTKL 236 G +L + + VS+L +A+K+LR L Sbjct: 228 GDILGISQMHVSRLQRKAVKKLREAL 253 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 9/205 (4%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNARE 99 DL+Q G +GLL A+E++D +G F+TYA I+ A+ L + +P + Sbjct: 187 DLIQEGSLGLLRAIEKFDHTKGYKFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNR 246 Query: 100 VAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIEL 159 + A QL Q LGR T+TE+A LG+ R++ + + E + Sbjct: 247 IQSARRQLTQSLGREPTDTELANHLGMSEEKLRELRRTAQDPVSLATPVGEEADSTLADF 306 Query: 160 VTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLE 215 + D H + LRQ++ A++ L ERE+ VL L Y + L+E+G Sbjct: 307 IPDPHALDA-DDAAASGMLRQQIAAALDQLSERERRVLELRYGLADGQPRTLEEVGKAFG 365 Query: 216 VGESRVSQLHSQAIKRLR-TKLGKL 239 V RV Q+ +A+++LR +LGKL Sbjct: 366 VTRERVRQIEVKALRKLRHPRLGKL 390 >UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=95 Tax=Actinomycetales RepID=A8L2N7_FRASN Length = 376 Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 9/224 (4%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 L + ++PLV + A R + R LDDL+Q IGL+ +V+R+D +G F+TYA I Sbjct: 155 LVRMHLPLVEYLARRFRNR---GEPLDDLVQVATIGLIKSVDRFDPERGVEFSTYATPTI 211 Query: 76 RGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 G + R + W VPR ++ + +A +L Q LGR+ T +E+A L + + Sbjct: 212 VGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQSLGRSPTVSEIARHLEMSEEEVL 271 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 + L N S D + D V D ++ + L R+ + +E LP R Sbjct: 272 EGLESANAYSAVSLDAP-DSGDDEAPAVADTLGVQD--ESLEGVEYRESLKPLLEKLPPR 328 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 EK +L L + + +I L + + VS+L ++ + +LR L Sbjct: 329 EKRILLLRFFGNMTQSQIANELGISQMHVSRLLARTLAQLRRGL 372 >UniRef50_P37970 RNA polymerase sigma-F factor n=17 Tax=Streptomyces RepID=RPOF_STRAU Length = 297 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 12/226 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + +L + +PLVR+ A R + R + ++D++Q G IGL+NA++R+D +G F T+A+ Sbjct: 74 RGALIEANLPLVRYAAARFRSR---NEPMEDVVQVGTIGLINAIDRFDPERGVQFPTFAM 130 Query: 73 QRIRGAML----DELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 + G + D +R+ VPR + +V A L GR T E+AERL I Sbjct: 131 PTVVGEIKRYFRDNVRT-VHVPRRLHELWVQVNAATEDLTTLHGRTPTTPEIAERLRISE 189 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + + + S + +E GD + + D E+P +L R V + Sbjct: 190 DEVLSCIEAGRSYHATSLEAAQE--GDGMPGLLDRLGYEDP--ELAGVEHRDLVRHLLVQ 245 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 LPERE+ +L L Y L +I A L V + VS+L +++ RLR+ Sbjct: 246 LPEREQRILLLRYYNNLTQSQISAELGVSQMHVSRLLARSFARLRS 291 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 16/224 (7%) Query: 23 LVRHEALRLQVRLP-----ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRG 77 L+RH LRL V + + + L DL+Q G IGL+ AVERYD G F+TYA IR Sbjct: 128 LIRHN-LRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGYRFSTYATFWIRQ 186 Query: 78 AMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 A+ + ++ VP + +V + QLEQ GR AT+ E+A+ L +D+ Q Sbjct: 187 AIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQALDLDVERIEQA 246 Query: 135 LLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 + + S D+ E G+S I + D + + Q + S +R ++ ++E+L ERE Sbjct: 247 --RSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQIRRSLESLSERE 304 Query: 194 KLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + VLTL + Q+ L EI + RV Q+ +A+ +LR Sbjct: 305 RGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLR 348 >UniRef50_A5KUN7 Flagellar biosynthesis sigma factor n=2 Tax=Vibrionales RepID=A5KUN7_9GAMM Length = 235 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 17/196 (8%) Query: 41 LDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREV 100 +DL Q + L+ + ++D + F RIRG ++DELR RD++ R R+ + Sbjct: 49 FEDLKQTAMMTLVIELRKFDHVANDDFRRAVAVRIRGELIDELRRRDYMERDKRQLVNRI 108 Query: 101 AQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV 160 A QL Q+LGR T EV LG++ +DY+Q + + + +D+ E + Sbjct: 109 KHAERQLLQQLGREPTSNEVCRHLGVEASDYQQAM-----TLVDVFDDIELESVVTAVPE 163 Query: 161 TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESR 220 TD N ++Q+L+S LP E+ +L L Y + L+ KE VL++ E + Sbjct: 164 TDKEVLFNEVKQVLNS------------LPAMEQRILYLIYVKSLSTKETALVLDINEIK 211 Query: 221 VSQLHSQAIKRLRTKL 236 V +L + + L++++ Sbjct: 212 VHRLKHRGLDILKSRI 227 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 14/206 (6%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVR 94 V L DL+Q G IGL+ VE++DA +G F+TYA Q I A+ D RS +P V Sbjct: 376 VALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQSITRAISDSSRS-IRLPVHVH 434 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 + + L+ ELGR +E E+ E +GID A YR ++ + N + S E G Sbjct: 435 DTISLIRKQTKALQVELGRPPSEEEICESVGIDRAKYRLVMECSRN--IVSL-ETPLRSG 491 Query: 155 DSIELVTDD--HQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLK 208 D + + + E + LR+ + + + L RE+ V+ + + L+ Sbjct: 492 DDVHFLGESLIAPEERAEENCSRDTLRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLE 551 Query: 209 EIGAVLEVGESRVSQLHSQAIKRLRT 234 E+G+ V R+ Q+ S+A+K+LRT Sbjct: 552 EVGSRFNVTRERIRQIESKALKKLRT 577 >UniRef50_Q1AWU9 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AWU9_RUBXD Length = 257 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 23/204 (11%) Query: 42 DDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWV--PRSVRRNARE 99 +DLLQAG +GL+ AV YD G AF++YA + G + LR V PR Sbjct: 58 EDLLQAGYVGLMKAVNGYDPSSGAAFSSYAYSMMEGEIRHHLRDSGLVRRPRWASGLYAR 117 Query: 100 VAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDE------WREEH 153 V++A L +ELGR EVA I R+++ + + S DE R H Sbjct: 118 VSEATAHLTRELGRPPLPEEVAREANITPEGIRELMKVYLATSVSSLDEEPDLGAIRSLH 177 Query: 154 GDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAV 213 +S L +D R + EA+E+L E ++ + L++ ++L+ EIG Sbjct: 178 YESFSLPVED---------------RIWLEEALESLSELQRKAVYLFFYKDLSQTEIGRR 222 Query: 214 LEVGESRVSQLHSQAIKRLRTKLG 237 L + + +VS+L + A+K L KLG Sbjct: 223 LGLPQRKVSRLVASAVKSLARKLG 246 >UniRef50_C6CXS0 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily n=4 Tax=Bacillales RepID=C6CXS0_PAESJ Length = 258 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 12/224 (5%) Query: 15 SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQR 74 +L Q + LVR ++ P E DL Q G + +L ++YD+ +G F YA++ Sbjct: 31 ALLQHFESLVRMAVSKISRNRPDLYE--DLYQVGQMSMLRLFKQYDSDKGVPFEGYAMKS 88 Query: 75 IRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 + G + + LR + W VPR+++ + +AI +L +L R+ E+A LG+ + + Sbjct: 89 VIGQLKNYLRDKSWYIQVPRNMKEKGLLIQKAIDELTTKLERSPKMDEIAAYLGLSVEET 148 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIEL--VTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 ++L + Q S D GDS + V DH + +D+ + + +A+ L Sbjct: 149 IEVLSSRESYQYVSLDTPLSSEGDSATIGDVISDHSDKY---SHVDNQI--ALSDAMAQL 203 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E E+ VL L YQ + +EI L V + VS+ +A+ +LR Sbjct: 204 KEEERKVLVLVYQHGQSQREIADQLGVSQMSVSRFQKRALDKLR 247 >UniRef50_C8W9U8 RNA polymerase sigma factor n=4 Tax=Coriobacteriaceae RepID=C8W9U8_ATOPD Length = 284 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 9/221 (4%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++ LVR A + + R LDDL+Q G IGL+ A++R++ +G FTTYA I G + Sbjct: 62 HLNLVRFLASKFKNR---GEPLDDLIQVGTIGLIKAIDRFEPDRGLEFTTYATPTIMGEI 118 Query: 80 LDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL 136 R + W VPR ++ + ++ Q L +EL R+ + E+A+RL ++ + + + Sbjct: 119 KRHFRDKGWSVRVPRRLQELSSKINQVTDDLTKELQRSPSIEEIAQRLDTNVEEILEAME 178 Query: 137 DTNN-SQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKL 195 ++ S + GD + D + E+ + L S+ R + EAI RE+ Sbjct: 179 SSSAYSSVPLEGGGSGADGDETPSIIDQYVTED--EDLAGSDDRIVLDEAIRDFSPREQE 236 Query: 196 VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 ++ + + E L EI L + + +VS+L + +KR++ K+ Sbjct: 237 IIRMRFVEGLTQVEIAEKLNISQVQVSRLLRRTLKRIQEKI 277 >UniRef50_B8HEI4 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HEI4_ARTCA Length = 264 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 12/226 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPAS-VELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 ++ L +++PLV + L +V AS + DDL G I L+ + + +D G F +A Sbjct: 6 RNGLVLQHLPLVGY--LVSEVCAKASHLSRDDLASVGSIALITSADSFDPAMGVPFGAFA 63 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 +RI GA DE+RS+DW RS R+ +E L LGRN T E+A LG++ + Sbjct: 64 RRRIIGAFADEMRSQDWATRSARKRIKETMGVEETLRGLLGRNPTVPEMAATLGVERSVV 123 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 L D + L D+ + + T + +P +L + + A+ LP Sbjct: 124 EAALADAART-LTPLDD--------VIVETYPAETASPEHSVLADERVKYLRAAVTALPA 174 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + + V+ Y +KE+ L + VSQ S+AI+ +R L Sbjct: 175 KMRYVIEEIYLAGRTVKELAEELGSTHAAVSQQRSEAIRLMRDGLA 220 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 12/205 (5%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSV 93 + L DL+Q G IGL+ A E++D +G F+TYA IR A+ D+ R+ +P V Sbjct: 191 GMSLLDLIQEGNIGLMRATEKFDYRKGYKFSTYATWWIRQAITRVIADQSRTIR-LPVHV 249 Query: 94 RRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH 153 V + +++Q GR+ T E+A LGI + R++L Q S + Sbjct: 250 GETINRVMRTSNRIQQTTGRDPTPDEIALELGIPVEKVRRVL--EAARQTISLETPIGPE 307 Query: 154 GDSI-ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLK 208 GDS+ +D + P++ LR+++ A+E LPERE+ ++ L Y L+ Sbjct: 308 GDSVLADFIEDGKGATPMESASSHILREQIDSALEKLPERERRIIQLRYGLYDGHYRTLE 367 Query: 209 EIGAVLEVGESRVSQLHSQAIKRLR 233 E+G + R+ Q+ ++ +++LR Sbjct: 368 EVGREFGITRERIRQIEARVLRKLR 392 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 124/249 (49%), Gaps = 31/249 (12%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + K + Q + LV A R Q R + L DL+Q G +GL+ AVE++D +G F Sbjct: 56 QGQIAKRKMIQANLRLVVSIAKRYQRR---GLSLLDLIQEGSLGLIRAVEKFDPSKGYKF 112 Query: 68 TTYAVQRIRGAMLDEL--RSRDW-VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA +R A+ L +SR +P + N ++ +++ +L ELGR E EVA+R+ Sbjct: 113 STYAYWWVRQAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQRM 172 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE----------NPLQQLL 174 I + R++ ++ D S+ + DD+Q E P++ + Sbjct: 173 EIPVEKLREI-----RHAVYRTD------AKSLNITLDDNQTELGEVLPDETSLPIEFVS 221 Query: 175 DSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIK 230 L ++ + +E LP R++ ++TL + + ++ KEIG + R QL ++A++ Sbjct: 222 QWELVTKINDLLEDLPPRQREIITLRFGLQTGKRMSYKEIGRQCGISHERARQLLNRAMR 281 Query: 231 RLRTKLGKL 239 L+ K +L Sbjct: 282 TLKQKAFRL 290 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 18/244 (7%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASV---------ELDDLLQAGGIGLLNAVERYD 60 + DK + W + R + +RL S+ L DL+Q G IGL+ AVE++ Sbjct: 241 IQDKITKWIAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIKAVEKFR 300 Query: 61 ALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNAT 116 +G F+TYA Q I A+ D+ R+ +P + ++AQA +L QELGR T Sbjct: 301 HQKGYKFSTYATWWIRQAITRAIADQARTI-RIPVHMGEAINKIAQARRRLTQELGREPT 359 Query: 117 ETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDS 176 E E+A LGI + R+ + + + + EE S+ DH+ P+ S Sbjct: 360 EQEIANYLGIPVEKIRE-VQKISQEPISLENPVGEEEDTSLGDFIQDHKAPAPMDAASQS 418 Query: 177 NLRQRVMEAIETLPEREKLVLTLYY---QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 LR ++ + ++ L ERE+ VL + + E +E+ +L V ++V Q S+ + + Sbjct: 419 LLRDQIDQVLKHLSERERGVLLMRFGLDCEPRPYREVAHILAVSPNQVMQAESRVLDMVA 478 Query: 234 TKLG 237 +L Sbjct: 479 ARLS 482 >UniRef50_UPI0001C32426 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32426 Length = 273 Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 10/214 (4%) Query: 13 KHSLWQRYVPLVRHEALRL-QVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 + L R++PL R ALR R P LDDL+Q +GL+ AV+R++ + TAF +YA Sbjct: 48 REELITRFLPLARQLALRYYHGREP----LDDLVQVASVGLVKAVDRFEVRRTTAFASYA 103 Query: 72 VQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 V + G + R W VPR ++ A V + +L+ G T ++AE+L + + Sbjct: 104 VPVMLGELRRYFRDNGWALHVPRGLQERALAVDRTADRLQVAQGAAPTPAQIAEQLKLTV 163 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + + + + S D R + + D ++ +L++ R+ + A++ Sbjct: 164 EEVVEAMAAARATDTVSLDAPRPSADGERDALVDSLGADDSRLELVE--YREAIAGALDA 221 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVS 222 LP RE+ +L L ++E+ EI A L V + ++S Sbjct: 222 LPVREREILRLRFEEDRTQSEIAARLGVSQMQIS 255 >UniRef50_C1BBL7 RNA polymerase sigma factor n=4 Tax=Rhodococcus RepID=C1BBL7_RHOOB Length = 285 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 27/236 (11%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L +R +PL H A R R LDDL+Q +GL+ AV+R+DA G +F +YAV Sbjct: 59 RQRLIERCLPLAEHIARRFLGR---GEPLDDLIQVARLGLVKAVDRFDARCGASFVSYAV 115 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R W VPRS++ + A +L LGR T +E+AE LGID Sbjct: 116 PTITGEVRRHFRDTGWAMHVPRSMQELHLSLTNATTELTTTLGRAPTASELAEALGIDKD 175 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLL---DSNLR----QRV 182 + + L ++ S D L D E PL + + D +L V Sbjct: 176 EVARGLRVSDAYSTLSVD---------FPLGED----ERPLSETIGDVDPSLAHVEDHVV 222 Query: 183 MEA-IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 +E + +LP+ E+ VL L + + +I A + V + +VS+L S+ + LR KL Sbjct: 223 LEPLLGSLPDLERTVLVLRFFGNMTQSQIAARVGVSQMQVSRLLSKTLADLRGKLA 278 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 10/199 (5%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++Y+ L G F+T A Q I A+ D+ R+ +P + Sbjct: 394 DLIQEGNIGLMKAVDKYNYLLGYKFSTCATWWVRQSISRAVADQARTIR-IPVHMADTIS 452 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 ++ + Q+ ELG T +E+AE+L + I D + ++ + + EE G + Sbjct: 453 KIVRVSKQMHNELGYEPTASEIAEKLSMPI-DKVKKVMRIAKEPVSLENPIGEEDGSCLS 511 Query: 159 LVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVL 214 +D P+++ + +LR+ A+ TL RE+ VL L + + L+E+G Sbjct: 512 DFIEDKNAILPIEEAIKFSLRETTTRALSTLTAREERVLRLRFGIGLPTDYTLEEVGGEF 571 Query: 215 EVGESRVSQLHSQAIKRLR 233 +V RV Q+ ++A+++L+ Sbjct: 572 KVTRERVRQIEAKALRKLK 590 >UniRef50_D1HUY6 Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HUY6_VITVI Length = 319 Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 13/224 (5%) Query: 18 QRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRG 77 Q Y LV A R Q + + L DL+Q G IGLL ER+D +G +TY IR Sbjct: 88 QSYRRLVVSIAARYQGK---GLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQ 144 Query: 78 AMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 A++ + ++ + P S+ ++A+A L + L R T E+AE + ++++ R Sbjct: 145 AIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVR-- 202 Query: 135 LLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 L+ + S D+ G +++ + P + + ++Q V A+ TL ERE Sbjct: 203 LVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCERE 262 Query: 194 KLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +L LY+ + L+ +EIG ++++ RV Q++S A+ +LR Sbjct: 263 AYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLR 306 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 10/199 (5%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AVE+++ +G F+TYA IR A+ D+ R+ +P + Sbjct: 439 DLIQEGNIGLMKAVEKFEWRRGYKFSTYATWWIRQAITRSIADQART-IRIPVHMIETIN 497 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 ++ + Q+ QE+GR T E+AE L + + Q+L +E + Sbjct: 498 KMMRVSRQIAQEIGREPTPEELAEHLELPVEKVLQILEVAKEPVSLETPIGDDEDSQLGD 557 Query: 159 LVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELN----LKEIGAVL 214 V DD+ ENPL + + L + +E +E L +RE+ VL + + +N L+E+G Sbjct: 558 FVEDDNA-ENPLDSTIGAALAEATLEVLENLTDREQKVLRMRFGIGMNTDHTLEEVGKQF 616 Query: 215 EVGESRVSQLHSQAIKRLR 233 V R+ Q+ ++A+++LR Sbjct: 617 GVTRERIRQIEAKALRKLR 635 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 116/214 (54%), Gaps = 14/214 (6%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM---LDELRSRDWVPRSVR 94 S+++ DL+QAG IGL+ AVE+YD +G F+TYA I+ ++ +D+ + +P + Sbjct: 86 SIDMLDLIQAGNIGLIKAVEKYDYKKGYKFSTYATWWIKQSITRYIDDCENTIRIPIHLH 145 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 + V + +L L R T E+A+ G+++ ++L N + S D +E Sbjct: 146 QRINFVKKKKQELLNVLLREPTIDEIADACGLEVDKVLELLRRDKN--VVSLDTPLKEDE 203 Query: 155 DS--IELVTDDHQ-RENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNL 207 DS +E + D ++ + ++ NL++++ E + L E+E+ VL + + + L Sbjct: 204 DSSLVEFIPSDADFKDVVIHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGIDDDDPKTL 263 Query: 208 KEIGAVLEVGESRVSQLHSQAIKRLR--TKLGKL 239 ++IG V V R+ Q+ ++AI++LR +KL +L Sbjct: 264 EQIGKVFGVTRERIRQIEAKAIRKLRHPSKLKQL 297 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 10/207 (4%) Query: 37 ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELR--SRDW-VPRSV 93 ++ + DL+Q G IGL+ AVE++D G FTTYA IR A+ ++ SR+ +P Sbjct: 211 GTMSMQDLIQEGNIGLIRAVEKFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHR 270 Query: 94 RRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH 153 + +A L + LGR TE E+AE +G+D + R+ + S D E Sbjct: 271 HEKINRIKRATVALSRSLGRQPTEAEIAEHVGLDPSRMRKFVESAAAVATVSLDVPINES 330 Query: 154 GDSIELVTDDHQREN--PLQQLLDSNLRQRVMEAI-ETLPEREKLVLTLYY----QEELN 206 + + D + EN P + +R+ V + + L ERE +VL + + E Sbjct: 331 DNQSATIGDFIRSENEGPADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKT 390 Query: 207 LKEIGAVLEVGESRVSQLHSQAIKRLR 233 L ++G L V RV Q+ +A+++LR Sbjct: 391 LNQVGETLGVTRERVRQIEMKALRKLR 417 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 103/202 (50%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AVE+++ +G F+TYA Q I A+ D+ R+ +P + Sbjct: 417 DLIQEGNIGLMKAVEKFEYKRGYKFSTYATWWIRQAITRAIADQARTI-RIPVHMIETIN 475 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 ++ + QL+Q++GR T E++ ++ I + ++++ +E GD Sbjct: 476 KMMKITRQLQQDMGREPTPEEISSKMDIPVEKIKKVMKIAKEPVSLETPIGEDEDSSLGD 535 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELN----LKEIG 211 IE D +NP +++ L++ + +ETL RE VL L + E + L+E+G Sbjct: 536 FIE----DKSAKNPSEEVTYLKLKEHTKQILETLSHREASVLKLRFGIECDSDHTLEEVG 591 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 V R+ Q+ ++A+++LR Sbjct: 592 KQFNVTRERIRQIEAKALRKLR 613 >UniRef50_C4RGL0 RNA polymerase sigma factor n=3 Tax=Micromonospora RepID=C4RGL0_9ACTO Length = 294 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 25/228 (10%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++PL H A R R DDL Q +GL+ A++++D +G F YA+ I G + Sbjct: 77 WLPLANHLAHRYSGR---GEPTDDLAQTAAVGLIKAIDKFDPSRGVDFAGYAIPTIIGEL 133 Query: 80 LDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL 136 R R W VPR ++ ++ A L Q LGR+ T ++A L + Sbjct: 134 KRHFRDRTWDIRVPRRLQELRLAISDANSTLLQTLGRSPTVADIAAHLKL---------- 183 Query: 137 DTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLD--------SNLRQRVMEAIET 188 T L + R + S+ T D R L +L + LR + A+ T Sbjct: 184 -TEEEVLEGLEGARAYNAVSLSTPTGDGDRATELGDMLGGEDTEFELAELRVALGPALAT 242 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 L ERE+ +LTL + L +I + V + VS+L ++A+ +LR +L Sbjct: 243 LDEREQKILTLRFYGNLTQSQIADQIGVSQMHVSRLLARALTKLRGQL 290 >UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Frankia sp. EuI1c RepID=D1V958_9ACTO Length = 393 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 9/233 (3%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 AE + L + ++PLV + A R + R LDDL+Q IGL+ +V+R+D +G Sbjct: 163 AERAAIRDQLVRMHLPLVEYLARRFRNR---GEPLDDLVQVATIGLIKSVDRFDPERGVE 219 Query: 67 FTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA I G + R + W VPR ++ + +A +L Q+LGR+ T E+A Sbjct: 220 FSTYATPTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQKLGRSPTVAEIAAH 279 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L + + + L N S D + D V D ++ + L R+ + Sbjct: 280 LEMTEEEVLEGLESANAYSAVSLDAP-DSGDDESPAVADTLGVQD--ESLEGVEYRESLK 336 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +E LP REK +L L + + +I L + + VS+L ++ + +LR L Sbjct: 337 PLLEKLPPREKRILLLRFFGNMTQSQIAIELGISQMHVSRLLARTLAQLRRGL 389 >UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQZ1_9GAMM Length = 359 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 10/199 (5%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL++ G +GL++AVE++D +G F+TYA Q I A++++ R+ +P V + R Sbjct: 146 DLIEEGNLGLMHAVEKFDPERGFRFSTYATWWIRQTIERALMNQGRT-IRIPVHVSKELR 204 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 A+ L QELGR+ TE E+A+RLG +AD +++ + S + + Sbjct: 205 MHARIARNLTQELGRDPTEEELAQRLGKPVADIQKLRAMSEPSTSMDLPPGPDGERSLTD 264 Query: 159 LVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT----LYYQEELNLKEIGAVL 214 ++ D + +E P L D +++ V E + L +++ VL L+ E L+++GA + Sbjct: 265 ILADVNAQE-PSSLLEDQDIQHLVDEWLGELDYKQREVLVRRFGLHGFERSTLEQVGAEI 323 Query: 215 EVGESRVSQLHSQAIKRLR 233 V RV Q+ A+KRLR Sbjct: 324 GVTRERVRQIQMDALKRLR 342 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AVE++D +G F+TYA Q I A+ D+ R+ +P + Sbjct: 193 DLVQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIR-LPVHMGEAIS 251 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 +V + +L+Q + R T E+A+ +GI R+ L + + +E G + Sbjct: 252 QVKRTSHKLQQTMQREPTPEEIADAMGISSTKVRRTLEASMHPLSLEMPVGQEGEGRMGD 311 Query: 159 LVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVL 214 + DD + P + S LR+++ E ++ LPERE+ ++ L Y + L+E+G Sbjct: 312 FIEDD-RISTPAEAAAASMLREQLEEVLQKLPERERKIIQLRYGLKDGRYRTLEEVGMEF 370 Query: 215 EVGESRVSQLHSQAIKRLR-TKLGK 238 + R+ Q+ + A+++LR LGK Sbjct: 371 GITRERIRQIEAVALRKLRHPHLGK 395 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 103/202 (50%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 DL+Q G +GL+ AVE+++ +G F+TYA IR A+ D+ R+ +P + Sbjct: 360 DLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQART-IRIPVHMIETLN 418 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNS---QLFSYDEWREEHGD 155 +V Q QL QE G T EVA+ + + + +Q++ Q D GD Sbjct: 419 KVMQVQKQLLQEFGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGD 478 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D ENP S LR+++++ +++L ERE+ VL+L + L+E+G Sbjct: 479 FIE----DKSAENPYDMTAYSLLREKIIDVLDSLTERERKVLSLRFGLVDGYSRTLEEVG 534 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 +V R+ Q+ ++A++++R Sbjct: 535 KQFKVTRERIRQIEAKALRKMR 556 >UniRef50_Q1AWA7 RNA polymerase, sigma 28 subunit n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AWA7_RUBXD Length = 258 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 13/206 (6%) Query: 41 LDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNA 97 L+DL+Q +GL+ AV+R+D + F+TYA I G + R + W VPR ++ Sbjct: 54 LEDLVQVASVGLIKAVDRFDVDRNIEFSTYATPNILGEIKRHFRDKGWAMRVPRGLQELR 113 Query: 98 REVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL---DTNNSQLFSYDEWREEHG 154 + V +AI + GR+ T E+AERL D+ + L N + L + + G Sbjct: 114 QAVKEAIREETVRTGRSPTMDELAERLDTDVESVAEALTLGRAYNTTSLDAPISQDDAEG 173 Query: 155 DSI-ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAV 213 D+I +L D++Q P++ + D L Q EA+ L E+++ +L L + E EI Sbjct: 174 DTIMDLQADENQ---PIEGIEDKLLLQ---EAMRGLREQQREILRLRFNEGKTQTEIAER 227 Query: 214 LEVGESRVSQLHSQAIKRLRTKLGKL 239 + V + VS+L +AI LR L ++ Sbjct: 228 IGVSQMHVSRLLRRAIADLRRSLSEM 253 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 12/200 (6%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AVE++D +G F+TYA Q I A+ D+ R+ +P + + Sbjct: 130 DLIQEGNIGLMRAVEKFDWRRGYRFSTYATWWIRQAITRAIADQGRT-IRLPVHMTDSIT 188 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDE-WREEHGDSI 157 + QL QELGR T E+AE + + Q++ + S D+ EE S+ Sbjct: 189 RYHRTTTQLAQELGRQPTPEEIAEAMSVQPEKIAQIVRAAQRA--VSLDQPLSEEDETSL 246 Query: 158 ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAV 213 + D ++P + +S +R+ + E +E L RE+LVL L Y E L E+G + Sbjct: 247 GDLIADELAQSPEELAEESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDL 306 Query: 214 LEVGESRVSQLHSQAIKRLR 233 L + RV Q+ ++A+++LR Sbjct: 307 LGISRERVRQIENEALRKLR 326 >UniRef50_C0JS04 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=C0JS04_STRLU Length = 336 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 12/226 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + +L + +PLVR+ A R + R + ++D++Q G IGL+NA++R+D +G F T+A+ Sbjct: 113 RGALIEANLPLVRYAAARFRSR---NEPMEDVVQVGTIGLINAIDRFDPDRGVQFPTFAM 169 Query: 73 QRIRGAML----DELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 + G + D +R+ VPR + +V A L GR+ T E+AERL I Sbjct: 170 PTVVGEIKRYFRDNVRTV-HVPRRLHELWVQVNGATEDLTTAHGRSPTTAEIAERLKIG- 227 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 D ++ S + E +E GD + + D E+P L R V + Sbjct: 228 EDEVLACIEAGRSYHATSLEAAQE-GDGLPGLLDRLGYEDP--ALAGVEHRDLVRHLLVQ 284 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 LPERE+ +L L Y L +I L V + VS+L +++ RLR+ Sbjct: 285 LPEREQRILMLRYYSNLTQSQISQELGVSQMHVSRLLARSFARLRS 330 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 104/204 (50%), Gaps = 20/204 (9%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++YD +G F+TYA Q I A+ D+ R+ +P + Sbjct: 379 DLIQEGNIGLMKAVDKYDYKKGFKFSTYATWWIRQAITRAIADQARTI-RIPVHMIETIN 437 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNS----QLFSYDEWREEH- 153 ++ + L QELGR T E+A++ G+ R++L + + DE E H Sbjct: 438 KLLRISRTLVQELGREPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDE--ESHL 495 Query: 154 GDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKE 209 GD IE D +P Q +L LR ++ E + TL ERE+ VL + E L++ Sbjct: 496 GDFIE----DKTVLSPEQHMLKQALRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQ 551 Query: 210 IGAVLEVGESRVSQLHSQAIKRLR 233 +G V R+ Q+ ++A+++LR Sbjct: 552 VGKRFGVTRERIRQIEAKALRKLR 575 >UniRef50_Q9RIS5 RNA polymerase sigma factor n=57 Tax=Streptomyces RepID=Q9RIS5_STRCO Length = 304 Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 9/234 (3%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 T E +++L + + LV+ A R + R S ++D++Q G IGL+ A++R++ +G Sbjct: 73 THEHAYVRNTLVELNLALVKFAASRFRSR---SEPMEDIIQVGTIGLIKAIDRFELSRGV 129 Query: 66 AFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F T+A+ I G + R W VPR ++ ++A+A +L Q L R T +E+AE Sbjct: 130 EFPTFAMPTIIGEIKRFFRDTSWSVRVPRRLQELRLDLAKAGDELAQRLDRAPTVSELAE 189 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 LG+ + + + +N S D EE L ++ L+ + + + Sbjct: 190 HLGLSKDEVVEGMAASNAYTASSLDAQPEEDDAEGALADRIGYEDHGLEGI---EYVESL 246 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 I LP R++ +L+L + + EIG L + + VS+L S+ + RLR L Sbjct: 247 KPLIAELPSRDRKILSLRFVAGMTQSEIGEELGISQMHVSRLLSRTLVRLRKGL 300 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G +GLL AVE++D +G F+TYA Q I A+ D+ R+ +P + Sbjct: 161 DLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTI-RIPVHMVETIN 219 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 ++ + L QELGR T E+A+ +GI R+++ EE GD Sbjct: 220 KLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGD 279 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 +E D + P+++ + LR+++ E ++TL ERE+ VL L + L+E+G Sbjct: 280 FVE----DPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVG 335 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 + V R+ Q+ ++A+++LR Sbjct: 336 QIFGVTRERIRQIEAKALRKLR 357 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 111/204 (54%), Gaps = 11/204 (5%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVR 94 V DL+Q G +GL A E++D +G F+TYA Q I A+ ++ R+ +P + Sbjct: 164 VPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIR-LPIHIV 222 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 ++ +A +L+Q+L RN TE E+AE L I + RQ+ + ++ +EE Sbjct: 223 EKLNKLKKAQRELKQKLCRNPTEGEMAEALDISVQQLRQLQQLRRQALSLNHRVGKEEDT 282 Query: 155 DSIELVTDDHQRENPLQQLLDSNLRQRVMEAI-ETLPEREKLVLTLYY----QEELNLKE 209 + ++L+ D+ +P ++ ++ +RQ + E + + L REK V++L Y E L+E Sbjct: 283 ELMDLLEDEDNL-SPEAKMNENMMRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEE 341 Query: 210 IGAVLEVGESRVSQLHSQAIKRLR 233 +G + + RV Q+ S+A+++LR Sbjct: 342 VGNMFNLSRERVRQIQSKAMRKLR 365 >UniRef50_B1VLU0 RNA polymerase sigma factor n=18 Tax=Bacteria RepID=B1VLU0_STRGG Length = 293 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 22/237 (9%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 +++L + + LVR A R + R S +++D++Q G IGL+ A++R+D + FT++AV Sbjct: 62 RNTLIEMNLSLVRFAANRFRNR--GSGDMEDIVQVGTIGLIKAIDRFDLSREVEFTSFAV 119 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R W VPR ++ ++A+A L L R+ T E+AE LGI+ + Sbjct: 120 PYIVGEIKRFFRDTSWAVHVPRRLQELRVDLAKAKEALAGVLDRDPTAKELAEYLGIEES 179 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET- 188 + + ++ +N S D D+ E L D + MEA+E Sbjct: 180 EVTEGIVASNGYTAGSLD----MPTDTAEAGPGQTAGRTFADVLGDPD---PAMEAVENL 232 Query: 189 ---------LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 L ERE+ ++ + + +E+ +IGA L + + VS+L S+ + +LR+ + Sbjct: 233 HALAPLLDELDERERRIIDMRFGQEMTQAQIGAELGISQMHVSRLLSRMLGKLRSGM 289 >UniRef50_C1DW20 RNA polymerase sigma factor for flagellar operon n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DW20_SULAA Length = 225 Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 108/225 (48%), Gaps = 31/225 (13%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLP-ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 +K L + + LV+ A ++ RLP S++ DDL Q G IGL+ A E Y +G F+TY Sbjct: 6 EKKRLVEENLNLVKKVASKIYYRLPDCSIDFDDLFQVGVIGLIKATENYHQDKG-KFSTY 64 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 A RIRG +LD LRS + P + + + + ++ A+ Sbjct: 65 AYIRIRGEILDFLRSLEVFPHTEK---------------------------DYITVEKAE 97 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDD-HQRENPLQQLLDSNLRQRVMEAIET- 188 L +N + + S D+ DSI L+ + P ++ +++ + IE Sbjct: 98 PDDNLPYSNTAVILSLDKIISIEDDSISLIDSIVSNSKTPEEEYALKEQIEKISQIIEQY 157 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L E EK V+ + EE + KEI ++ + R+SQ+ ++A++++R Sbjct: 158 LDENEKKVINYLFFEEKDPKEIQEIMGISLGRISQIKAKAVEKIR 202 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 37/243 (15%) Query: 17 WQRYVPLVRHEALRLQVRLPASVELD---------DLLQAGGIGLLNAVERYDALQGTAF 67 WQR R E + +RL S+ + DL+Q G IGL+ AVER++ +G F Sbjct: 235 WQRKALEARTEMVECNLRLVVSIAREYQNRGQPFLDLIQEGNIGLMRAVERFEYRRGYKF 294 Query: 68 TTYAVQRIRGAMLDELRSRDWVPRSVRRNAREV----------AQAI---GQLEQELGRN 114 T A IR A + RS+ AR + A+ I Q+ QE GR+ Sbjct: 295 ATCATWWIRQA----------ISRSIANQARTIRIPTHMIDLLAKLIRVQRQMTQESGRD 344 Query: 115 ATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLL 174 T ++A L + + R LL + + EE G + +DH E+P +Q Sbjct: 345 PTAEDLAGELHLPLRRVR-ALLKMAEEPISIHTPVGEEGGSRLGDFIEDHSVEDPSKQAA 403 Query: 175 DSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIK 230 + LR+++ + TL ERE+ +L + E L+EIG +V RV Q+ ++A++ Sbjct: 404 VAMLREKINAVLHTLTEREREILEQRFGLIDGRERTLEEIGRHFKVTRERVRQIEAKALR 463 Query: 231 RLR 233 ++R Sbjct: 464 KMR 466 >UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacteria RepID=C6X620_FLAB3 Length = 294 Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 10/203 (4%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWV---PRSVRR 95 + L DL+ G +GL+ A +RYD +G F +YAV IR ++L L + + P + Sbjct: 80 LSLPDLINEGNLGLMKAAKRYDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKIG 139 Query: 96 NAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD 155 + ++ +A LEQE R + E+AE L + D ++ + N+ + S D E D Sbjct: 140 SINKINKAYAHLEQENERPPSPEELAEVLDMSEDDIKESM--KNSGRHLSMDAPLVEGED 197 Query: 156 S-IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEI 210 S + V + +P ++L+ +L+ + A++TL RE ++ LY+ + + L+EI Sbjct: 198 SNLYDVLRSGESPSPDKELMLESLQIEIERALQTLTPREADLVRLYFGLNGKHPMTLEEI 257 Query: 211 GAVLEVGESRVSQLHSQAIKRLR 233 G ++ RV Q+ +AIKRL+ Sbjct: 258 GETFDLTRERVRQIKEKAIKRLK 280 >UniRef50_C0GDZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDZ7_9FIRM Length = 219 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 16/223 (7%) Query: 17 WQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIR 76 +++++PLV R Q S DDL Q G IGLL A++++D +G AF TYAV I Sbjct: 8 FEKHLPLVHSLVKRYQGEYAES---DDLFQVGCIGLLKALKKFDPARGNAFATYAVPVIA 64 Query: 77 GAMLDELRSRDWV--PRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 G + LR + + RS+ A + + +LEQ LGR T E+A G+ + M Sbjct: 65 GEIKMYLRGQGAMKFSRSLVTQAGRIKRVQNELEQALGRQPTLGELAAASGLGREEL-LM 123 Query: 135 LLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREK 194 LD S + S D G++ EL + + +++D R + EA+ LPERE+ Sbjct: 124 ALDAVRSPV-SLDAAVP--GETAELAVTQAETD----EVVD---RVALREALTDLPERER 173 Query: 195 LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 ++ + + +E+ +L + + VS+L + + RL+ +L Sbjct: 174 RIVLYRFFRHKSQQEVAEILGISQMHVSRLEKKVLARLKVELA 216 >UniRef50_A4E6Q4 RNA polymerase sigma factor n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q4_9ACTN Length = 263 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 5/199 (2%) Query: 41 LDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNA 97 LDDL+Q G +GLL A++R+D +G FTT+A I G + R + W VPR ++ + Sbjct: 58 LDDLMQVGYLGLLKAIDRFDPERGLEFTTFATPTILGEIKRHFRDKGWSVRVPRRLQELS 117 Query: 98 REVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI 157 +V QA +L EL R+ E+AE L + + + + + ++ + D Sbjct: 118 AKVNQATDKLTNELQRSPKVEEIAEYLDVTVDEVLEAMESSSAYTSVPIEAPGASDSDDA 177 Query: 158 ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVG 217 + D + ++ D L + EAI RE+ V+ L + + + EI L + Sbjct: 178 PSILDRYADDDNELDFTDDRL--VIEEAIRDFSPREREVIELRFVKGMTQIEIAKKLGIS 235 Query: 218 ESRVSQLHSQAIKRLRTKL 236 + +VS+L + +K+++ K+ Sbjct: 236 QVQVSRLLRRTLKKIQDKI 254 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 103/205 (50%), Gaps = 14/205 (6%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV+R++ +G F+TYA Q + A+ D R+ VP + Sbjct: 418 DLVQEGNIGLMKAVDRFEYRRGFKFSTYATWWIRQSVSRAIADYGRTI-RVPVHMADAMH 476 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI- 157 V + G++ QE GR A +E+A RLG+ R + T Q S D E D+ Sbjct: 477 RVKRVAGEMRQETGRPARSSELAARLGMSEEKVRSVQRVTR--QPVSLDVPIGEEADTTL 534 Query: 158 -ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGA 212 E+V +D PL LL ++LR + A+ L RE V+ L + E L+E+G Sbjct: 535 GEMV-EDSSTLAPLDALLQADLRVAIDAALGVLTPREAKVIKLRFGVDAVSEHTLEELGD 593 Query: 213 VLEVGESRVSQLHSQAIKRLRTKLG 237 +V RV Q+ ++A+++LR G Sbjct: 594 QFDVTRERVRQIQNKALQKLRHSDG 618 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA IR A+ D+ R+ +P + Sbjct: 473 DLIQEGNIGLMKAVDKFEWRRGYKFSTYATWWIRQAITRSIADQARTI-RIPVHMIETIN 531 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNS---QLFSYDEWREEHGD 155 ++ + Q+ QE+GR T E+AER+ + + R++L + DE GD Sbjct: 532 KLVRTSRQMVQEMGREPTPEEIAERMSMSLEKVRKVLKIAKEPISLETPVGDEEDSHLGD 591 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D +P + + SNLR ++TL RE+ VL + + + L+E+G Sbjct: 592 FIE----DKSMLSPSEHAIMSNLRDTTGRVLQTLTSREEHVLRMRFGIGLPTDHTLEEVG 647 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 V R+ Q+ ++A+++LR Sbjct: 648 KQFNVTRERIRQIEAKALRKLR 669 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 18/210 (8%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 DL+Q G +GL+ AVE+++ +G F+TYA IR A+ D+ R+ +P + Sbjct: 475 DLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQART-IRIPVHMIETIN 533 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNS---QLFSYDEWREEHGD 155 ++ + QL QE GR T E+AE + + + R +L Q D GD Sbjct: 534 KLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGD 593 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D ENP+++ S L++++ + ++TL +RE+ V+ + L+E+G Sbjct: 594 FIE----DKAAENPMEEASFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVG 649 Query: 212 AVLEVGESRVSQLHSQAIKRLR--TKLGKL 239 V R+ Q+ ++A+++LR T++ K+ Sbjct: 650 RQFSVTRERIRQIEAKALRKLRHPTRISKI 679 >UniRef50_B5GUA2 RNA polymerase sigma factor n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GUA2_STRCL Length = 326 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 12/226 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + +L + +PLVR+ A R + R + ++D++Q G IGL+NA++R+D +G F T+A+ Sbjct: 103 RGALIEANLPLVRYAAARFRSR---NEPMEDVVQVGTIGLINAIDRFDPDRGVQFPTFAM 159 Query: 73 QRIRGAML----DELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 + G + D +R+ VPR + +V A L GR T E+AERL I Sbjct: 160 PTVVGEIKRYFRDNVRTV-HVPRRLHELWVQVNGATEDLTTAHGRIPTTAEIAERLRIG- 217 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 D ++ S + E +E GD + + D E+P L R V + Sbjct: 218 EDEVLACIEAGRSYHATSLEAAQE-GDGLPGLLDRLGYEDP--ALAGVEHRDLVRHLLVQ 274 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 LPERE+ +L L Y L +I L V + VS+L +++ RLR+ Sbjct: 275 LPEREQRILMLRYYSNLTQSQISQELGVSQMHVSRLLARSFARLRS 320 >UniRef50_P77996 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium thermosulfurigenes RepID=P77996_THETU Length = 261 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 13/208 (6%) Query: 35 LPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWV---PR 91 L + VE DDL+Q G IGLL A++++D +G F+TYA I+ +M + + + P Sbjct: 44 LKSGVEFDDLVQEGLIGLLTAIDKFDHTKGYKFSTYATWYIQQSMRRYIGNYGKIIRLPI 103 Query: 92 SVRRNAREVAQAIGQLEQELGRNATETEVAERLGI---DIADYRQMLLDTNNSQLFSYDE 148 + + +A +EQ+ G AT E++ G +I Y D + + DE Sbjct: 104 HINEKINRILKARYLIEQKKGSLATTEEISRLTGYTEEEIEGYLSYATDVISLNQYVNDE 163 Query: 149 WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLK 208 + + I + DD + + ++ +++ + + +++LPERE+++L + + NLK Sbjct: 164 RVD--AELINFIQDDTI--DVEEMAIEKEIKKEIRKILDSLPERERMILKMRFGFGCNLK 219 Query: 209 ---EIGAVLEVGESRVSQLHSQAIKRLR 233 EIG + + R+ Q+ + IK LR Sbjct: 220 TLTEIGNIFGLTRERIRQIQNNTIKELR 247 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G +GL+ AV+++ +G F+TYA Q I A+ D R+ +P + Sbjct: 300 DLIQEGNLGLMRAVDKFQTHKGFKFSTYATWWIRQAITRALADHARTIR-LPVHLVETLN 358 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 V++ QL QELGR T +E+A + + + R++L + +EE GD Sbjct: 359 RVSRVARQLTQELGREPTTSELAAAVNMPLDRLRELLQAAQDPVSLEAPVGQEEESTLGD 418 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIG 211 +E D + PL S LR++V + TL ERE+ VL + + E L+E+G Sbjct: 419 FLE----DERAVAPLDAAALSLLREQVQSLLATLTERERRVLAMRFGLEDGQTYTLEEVG 474 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 V RV Q+ ++A+++LR Sbjct: 475 RAFGVTRERVRQIEAKALRKLR 496 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 110/204 (53%), Gaps = 11/204 (5%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVR 94 V DL+Q G +GL A E++D +G F+TYA Q I A+ ++ R+ +P + Sbjct: 176 VPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIR-LPIHIV 234 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 ++ +A +L+Q+ RN +E E+AE L I + RQ+ + ++ +EE Sbjct: 235 EKLNKLKKAQRELKQKFSRNPSEAEMAEALEISVPQLRQLQQLRRQALSLNHRVGKEEDT 294 Query: 155 DSIELVTDDHQRENPLQQLLDSNLRQRVMEAI-ETLPEREKLVLTLYY----QEELNLKE 209 + ++L+ D+ +P ++ ++ +RQ + E + + L REK V++L Y E L+E Sbjct: 295 ELMDLLEDEDNL-SPEAKMNENMMRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEE 353 Query: 210 IGAVLEVGESRVSQLHSQAIKRLR 233 +G + + RV Q+ S+A+++LR Sbjct: 354 VGNMFNLSRERVRQIQSKAMRKLR 377 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 119/237 (50%), Gaps = 26/237 (10%) Query: 18 QRYVPLVRHEALRLQVRLPASV---------ELDDLLQAGGIGLLNAVERYDALQGTAFT 68 +R + E ++ +RL S+ + DL+Q G IGL+ AV+++D +G F+ Sbjct: 406 ERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFS 465 Query: 69 TYAV----QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 TYA Q I A+ D+ R+ +P + ++ + + Q+ E+GR T E++ RL Sbjct: 466 TYATWWVRQAITRAIADQARTIR-IPVHMIETVNKINRTLRQMLHEIGREPTLEELSARL 524 Query: 125 GIDIADYRQML---LDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 G+++ R+++ D + + D+ GD IE D + P + ++LR+ Sbjct: 525 GMNVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIE----DKRAVKPENAAVLADLREI 580 Query: 182 VMEAIETLPEREKLVLTLYY-----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + TL +E+ +L + + ++ L+E+G + V R+ Q+ ++A+++LR Sbjct: 581 TTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLR 637 >UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A692_GEMAT Length = 295 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 12/205 (5%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVR 94 + L DL+ G +GLL A ++D QG F +YAV IR A+L L + VP + Sbjct: 81 GLPLIDLIGEGNVGLLTAARKFDPDQGVKFISYAVWWIRQAILSSLARQGRTVRVPLNRT 140 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 + + +A L Q+L R + E+A+ G+ + D Q L N + D + G Sbjct: 141 ADLSRIIKASEILRQKLRREPSPEELAQVTGLSV-DVVQSLAALNTGDV-RLDAPMDPDG 198 Query: 155 DS--IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLK 208 D IE D + ++ ++ L + +A+ TLP R+ VL LY+ E L+ Sbjct: 199 DRSLIERFVADEMPDTE-EEAMNRFLTDEIEQALSTLPPRDAKVLRLYFGLEGGREHTLE 257 Query: 209 EIGAVLEVGESRVSQLHSQAIKRLR 233 EIG++L V RV QL +A+KRLR Sbjct: 258 EIGSMLGVTRERVRQLRDRALKRLR 282 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 11/204 (5%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVR 94 ++E DL+Q G +GL VE++D +G F+TYA IR A+ + + +P + Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHIT 174 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 ++ + +L Q+LGR+AT E+A L I+ + R+ L + Q S D ++ Sbjct: 175 EKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQIRECL--SMARQPISLDVRVGDNQ 232 Query: 155 DS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKE 209 D+ + + +DH+ +P Q + LRQ + +E L +++ VL L + +EL+L + Sbjct: 233 DTELSELLEDHE-ASPDQYITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAK 291 Query: 210 IGAVLEVGESRVSQLHSQAIKRLR 233 IG L + RV QL QA+ +LR Sbjct: 292 IGKKLNISRERVRQLEHQALAQLR 315 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 10/200 (5%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 D++Q G IGL+ AV+++D +G F+TYA IR A+ D+ R+ VP + Sbjct: 368 DIIQEGNIGLMKAVDKFDYRKGFKFSTYATWWIRQAITRSIADQARTI-RVPVHMIETIN 426 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 +V + Q+ QE GR ATE E+ E D + +L+ +++ + ++ ++ Sbjct: 427 KVNRIKRQILQEKGREATEEEIIEYTPNMTKDKLKKILNISHTPISMESPIGDDEDSTVG 486 Query: 159 LVTDDHQRENPLQQLLDSNLRQRVMEAIET-LPEREKLVLTLYYQEELN----LKEIGAV 213 +D +P++ NLR+ + E I+T L ERE VL + + +N L+E+G Sbjct: 487 DFIEDKNNYSPIEAANLENLREAIKELIDTGLTEREAKVLMMRFGIGMNTDHTLEEVGKQ 546 Query: 214 LEVGESRVSQLHSQAIKRLR 233 V R+ Q+ ++A+++L+ Sbjct: 547 FNVTRERIRQIEAKALRKLK 566 >UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroidetes/Chlorobi group RepID=Q2S172_SALRD Length = 313 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 19/230 (8%) Query: 26 HEALRLQVRLPASV---------ELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIR 76 H+ R +R SV L DL+ G GL+ A +R+D +G F +YAV IR Sbjct: 78 HKLCRANLRFVVSVAKKYQGQGLSLADLINEGNYGLIKAAKRFDETRGFKFISYAVWWIR 137 Query: 77 GAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQ 133 A+L L + V P + ++ +A +L+Q+L R E+AE L ID+ R+ Sbjct: 138 QAILQALAEQSRVVRLPLNRIGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKVRE 197 Query: 134 MLLDTNNSQLFSYD-EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 + T S+ S D + EE +S+ V D ++P +++L +++ + A+ L +R Sbjct: 198 AMKHT--SRHLSMDAPFNEEDDNSLLDVLPDEDNDSPDEEMLSESVKIDIERALSALHDR 255 Query: 193 EKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E + LY+ + L L+EIG ++ RV Q+ +A+++LR + K Sbjct: 256 EAEITRLYFGIGREHPLTLEEIGKRFDLTRERVRQIKEKALRKLRQRHSK 305 >UniRef50_Q7NH69 Glr2668 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NH69_GLOVI Length = 254 Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 64/130 (49%), Gaps = 9/130 (6%) Query: 37 ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRR- 95 +S L+DL+Q G IGL+ AVER+D G AF+++A IRGAM LR R RR Sbjct: 49 SSEPLEDLVQVGAIGLMRAVERFDPSLGHAFSSFATPCIRGAMQHYLRDHGHSVRLPRRL 108 Query: 96 -----NAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWR 150 AR A A L Q G +E +VA L I ++ QM L N L S D Sbjct: 109 LELDSRARRAAHA---LSQRHGCTPSERQVASALDISAEEWLQMRLARANRTLVSLDAPA 165 Query: 151 EEHGDSIELV 160 H D+ LV Sbjct: 166 GPHPDTPPLV 175 >UniRef50_Q47Q97 RNA polymerase sigma factor n=2 Tax=Thermobifida fusca YX RepID=Q47Q97_THEFY Length = 308 Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 26/209 (12%) Query: 41 LDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNA 97 +DDL Q G +GL+ A++ +D G F Y + + G + R W VPR + Sbjct: 111 MDDLYQVGMLGLMKAIKGFDPSYGKPFVAYLLPMVTGELKRHFRDTTWAVRVPRVHQERR 170 Query: 98 REVAQAIGQLEQELGRNATETEVAERLGIDI----------ADYRQMLLDTNNSQLFSYD 147 E+ + I + Q+ GR T E+A+ L +D+ + Y + LDT F Sbjct: 171 SELNRVIAEFTQKHGRTPTTREIADALEMDLESAIELIDASSAYSALSLDTP----FGDT 226 Query: 148 EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNL 207 E GD++ + D L+ ++D + + +A++ LPERE+ V+ L + Sbjct: 227 EDESALGDTLGVADGD------LETVVD---KTSLKDALDRLPERERRVILLRFFGNKTQ 277 Query: 208 KEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 EI A + + + VS+L SQ +++LR +L Sbjct: 278 SEIAADVGLSQMHVSRLLSQTLRQLRREL 306 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 105/203 (51%), Gaps = 16/203 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ A ++++ +G F+TYA Q I A+ D+ R+ +P + + Sbjct: 307 DLIQEGNIGLMRAADKFEYRRGYKFSTYATWWIRQAITRAIADQSRT-IRIPVHMNESMN 365 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 + +A +LE+ELGR T E+ R+ I + +++ + + R+ GD Sbjct: 366 KFLRATRELEKELGRTPTNDEIGRRMDIPVEKVQKLKTISRDPVSLETPVGRDGESALGD 425 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D +P+ +++SN+R ++TL +E+ V+ + + + E L+EIG Sbjct: 426 LIE----DRWVGSPVDAVIESNVRDETAGILKTLSPKEEKVIRMRFGIGCEREHTLEEIG 481 Query: 212 AVLEVGESRVSQLHSQAIKRLRT 234 +V R+ Q+ ++A+++LR Sbjct: 482 QEFDVTRERIRQIEAKALRQLRA 504 >UniRef50_B1X0P5 Group 3 sigma-70 RNA polymerase sigma factor J n=18 Tax=Cyanobacteria RepID=B1X0P5_CYAA5 Length = 282 Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 13/227 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ L +R + LVR A R+ + S +DL Q G +GL+ A+ER+D QG AF+++A+ Sbjct: 53 RNQLVERNLGLVRQVAHRISRQ--CSEPYEDLEQIGYLGLIRAIERFDPQQGCAFSSFAI 110 Query: 73 QRIRGAMLDELRSRDWVPRSVRR------NAREVAQAIGQLEQELGRNATETEVAERLGI 126 IRG ML LR + V R RR A+++ + QL L R ++ E+A+ LG+ Sbjct: 111 PYIRGEMLHYLRDKGSVMRIPRRWQELYNKAKKIRK---QLTVSLKRPPSDWEIADALGV 167 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + ++ + L N L S D + D SI +E +Q L+ + R ++ A Sbjct: 168 PLEEWNECQLALQNRLLVSLDATISHNVDCSISFGDTLPDQEYQAKQKLEED-RLQLQRA 226 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 + L E+ K + + EL KE + + V++ + I++L Sbjct: 227 LGQLEEKTKAAIECVFLHELPRKEAAKQIGISPMTVTRHLKKGIQQL 273 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G +GL+ AV+++D + F+TYA Q I A+ D+ R+ +P + Sbjct: 238 DLIQEGNLGLMKAVDKFDVDRNFKFSTYATWWIRQAITRAIADQARTI-RIPVHMVETIH 296 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 ++ + L QELGR E+A+ + I R +L + EE GD Sbjct: 297 KLTRISRTLLQELGREPKPEEIAKEMDITTEKVRDILRISQEPVSLEKPIGEEEDSHLGD 356 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 I D + +PL S LR ++E + TL ERE+ VL L + ++ L+E+G Sbjct: 357 FIP----DTEVPSPLDVAFSSMLRDELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVG 412 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 +V R+ Q+ S+AI++L+ Sbjct: 413 KQFDVTRERIRQIESKAIRKLK 434 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 17/206 (8%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVR 94 + DL+Q G +GL+ A E++D +G F+TYA Q I A+ D+ R+ +P + Sbjct: 239 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT-IRLPVHLY 297 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH- 153 + + L QE GR TE E+AE + + I R + +EE Sbjct: 298 ETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 357 Query: 154 --GDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEE----LNL 207 GD IE ENP Q + + LR+ + + TL RE+ VL L Y + L Sbjct: 358 RLGDFIE-----ADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTL 412 Query: 208 KEIGAVLEVGESRVSQLHSQAIKRLR 233 +EIG + +V R+ Q+ ++A+++LR Sbjct: 413 EEIGQIFDVTRERIRQIEAKALRKLR 438 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA Q I A+ D+ R+ +P + Sbjct: 487 DLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQART-IRIPVHMIETIN 545 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 ++ + L QELGR T E+AER+ + + R++L EE GD Sbjct: 546 KLVRTSRYLVQELGREPTPEEIAERMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGD 605 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D +P ++ NL ++ + + TL RE+ VL + + + + L+E+G Sbjct: 606 FIE----DKSVTSPSDAVISVNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVG 661 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 EV R+ Q+ ++A+++LR Sbjct: 662 QDFEVTRERIRQIEAKALRKLR 683 >UniRef50_A1T0J9 Predicted sigma-28 (Sigma F) factor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T0J9_PSYIN Length = 243 Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 18/220 (8%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG-TAFTTYAVQR 74 L +Y+ LV H ++ + + DD+ Q G I LL + R+ + F R Sbjct: 28 LVNKYLYLV-HAVIKKMGYINCISDNDDMKQVGLIALLKMIRRFPVMDDEKEFIRLTYIR 86 Query: 75 IRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 IRG++LDE+RSRDW R+NA L Q LGR ++E+ E + Y + Sbjct: 87 IRGSILDEIRSRDWRSEESRKNASTFLAQEKALMQSLGRLPNKSEMLENKVLSEQQYEEA 146 Query: 135 LLDTNNSQLFS--YDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 N ++FS D+ +++ S+++ T+ +D+ Q + A++ L E Sbjct: 147 RCAI-NGKVFSELSDQLLKDNAQSVDICTE-----------IDNT--QCLSVALKQLTEE 192 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 E L+L L Y+++++ KE+ SR++++ +A ++L Sbjct: 193 EVLILHLMYEKDMSFKEMALATNNNFSRINKIQREAHRKL 232 >UniRef50_A6TQA4 RNA polymerase sigma factor n=61 Tax=Clostridia RepID=A6TQA4_ALKMQ Length = 258 Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 9/201 (4%) Query: 42 DDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW--VPRSVRRNARE 99 +DL Q G IGL+ A+ ++D F+TYAV I G + LR V RS+++ A Sbjct: 61 EDLFQLGSIGLIKAIRKFDISFNVRFSTYAVPMIIGEIKRFLRDDGIIKVSRSLKQTASR 120 Query: 100 VAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIEL 159 V +L +E GR T E+A+ L I + M LD+N + Y+ ++ G I L Sbjct: 121 VKVTKEKLFKEFGREPTLHEIAKVLEITKEEI-VMALDSNMYPEYLYEVIHQDDGSPIHL 179 Query: 160 VTDDHQRENPLQQLLDSNLRQRVM--EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVG 217 + + ++ L DS + ++M E I L RE+ ++ L Y ++ EI VL + Sbjct: 180 IDKISETDS----LDDSEVIDKIMLKEVIGRLEPRERQIIILRYFKDKTQTEIAKVLGIS 235 Query: 218 ESRVSQLHSQAIKRLRTKLGK 238 + +VS++ + ++ ++ + K Sbjct: 236 QVQVSRIEKKVLQTMKDMMSK 256 >UniRef50_B9YFM7 RNA polymerase sigma factor n=1 Tax='Nostoc azollae' 0708 RepID=B9YFM7_ANAAZ Length = 289 Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 11/203 (5%) Query: 42 DDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVA 101 DDL+Q G +GL+ A+E+++ +G AF++YA+ IRG + LR + R RR Sbjct: 87 DDLIQVGCLGLIRAIEKFELSKGNAFSSYAIPYIRGEIQHYLRDKGVTMRIPRRWLALQQ 146 Query: 102 QAIG---QLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWRE--EHGDS 156 QAIG L ++ R T+ E+A L I ++++ ++ L N S D + E G S Sbjct: 147 QAIGLSRSLREKYNRQPTDAELAAVLAISLSEWEEIKLAWMNRSPLSLDVPIKDGEEGAS 206 Query: 157 I--ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVL 214 ELV D H R L Q + R+ +A+ L R + VL + ++L K++ L Sbjct: 207 CLGELVPDPHYRSFQLAQ----EDQIRLQQALVQLENRTREVLECVFLQDLTQKQVAEHL 262 Query: 215 EVGESRVSQLHSQAIKRLRTKLG 237 + VS+ + + L+ +G Sbjct: 263 GISVVTVSRRVKKGLDLLKYLMG 285 >UniRef50_C4DVF5 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DVF5_9ACTO Length = 267 Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 10/227 (4%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++++ QR +PL A R + R L+DL Q +GL+NAV+ + +G FT +AV Sbjct: 46 RNTVVQRALPLADRLARRFEHR---GQPLEDLTQVARLGLINAVDNFKCGRGGGFTHFAV 102 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R + W VPR ++ +A L Q LGR+ T + AE L + + Sbjct: 103 PSILGELKRHFRDKGWLVRVPRRLQETRLAFNEASKDLSQRLGRSPTLEDYAEYLSMPVE 162 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 R + + S H +S E + D +P + + R + AI+ L Sbjct: 163 QVRAGINCVGAYEGVSLHT--PAHRESSEELIDSLGGSDP--AMASAEARMLLRPAIKEL 218 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 RE +L+L + ++L+ EI + + + VS+L Q + +LR +L Sbjct: 219 TPRECRILSLRFVDDLHQSEIAREVGLSQMHVSRLLRQTLTKLRERL 265 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 12/200 (6%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDEL--RSRDW-VPRSVRRNARE 99 DL+Q G IGL+ A +++D +G F+TYA IR A+ + +SR +P V + Sbjct: 253 DLIQEGNIGLMRAADKFDYTRGYKFSTYATWWIRQAVTRAIADQSRTIRLPVHVCETVSK 312 Query: 100 VAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI-- 157 + + +L+QELG T +++ LG+ + Q + + S + E GDS+ Sbjct: 313 IHKTSQKLQQELGHEPTIEQLSSELGMPMKKVVQ--IQQASKFPVSLEAPIGEDGDSMLG 370 Query: 158 ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAV 213 + + D H NP+Q+ + LR+++ ++ LP +E+ VL L + + L+E+G Sbjct: 371 DFLEDVHVL-NPVQKAANDILREQINSVLQNLPPKERKVLELRFGLVDGKCRTLEEVGNE 429 Query: 214 LEVGESRVSQLHSQAIKRLR 233 + RV Q+ A++RLR Sbjct: 430 FAITRERVRQIECTALRRLR 449 >UniRef50_UPI0001C321C7 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C321C7 Length = 263 Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 19/206 (9%) Query: 37 ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSV 93 S LDDL+Q +GL+ AV+R+D +G +F+T+A I G +L R W V R Sbjct: 62 GSESLDDLVQVASVGLIKAVDRFDPDRGHSFSTFAQPTIVGELLRHFRDTGWGVHVARGT 121 Query: 94 RRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSY------- 146 + A +V A +E E G AT ++AER G ++ + L N S Sbjct: 122 QELALKVRSAAEAIETETGAVATPRQIAERTGAELEAVVEALGALANRTALSLATPAGHD 181 Query: 147 DEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELN 206 DE D++ V + + R + LL LR LPERE+ ++ + + ++L Sbjct: 182 DEGDATIADTLGDVEEGY-RAAEARALLGPALRH--------LPEREQRIIRMRFVDDLT 232 Query: 207 LKEIGAVLEVGESRVSQLHSQAIKRL 232 EI + V + ++S+L Q++ +L Sbjct: 233 QSEIATEIGVSQMQISRLLRQSLDKL 258 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA IR A+ D+ R+ +P + Sbjct: 437 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI-RIPVHMIETIN 495 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML---LDTNNSQLFSYDEWREEHGD 155 ++ + QL QE+GR T E+ ERL +D A R++L + + + D+ GD Sbjct: 496 KINRVSRQLLQEMGREPTPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGD 555 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEEL----NLKEIG 211 IE D +P+ + LR+ + + L ERE VL + + ++ L+E+G Sbjct: 556 FIE----DGTISSPVDDATAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVG 611 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 +V R+ Q+ ++A+++LR Sbjct: 612 KQFDVTRERIRQIEAKALRKLR 633 >UniRef50_C7LZN3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZN3_ACIFD Length = 294 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 12/205 (5%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDEL--RSRDWV-PRSVR 94 + LDDL+Q G IGLL A++ YD +G F+TYA IR A+ L RD V PR + Sbjct: 79 GISLDDLVQEGTIGLLRAIDLYDGRRGFRFSTYATWWIRQAIAQALTRTRRDVVLPRGIA 138 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 V +LEQ LGR + E+A GID + R L + S D+ E Sbjct: 139 AELARVEVQRRELEQALGRQPSMAELAAASGID--ELRVRELQGYARSVLSLDQAVGEER 196 Query: 155 D-SIELVTDDHQRENPLQQLLD-SNLRQRVMEAIETLPEREKLVLTLYYQEELN----LK 208 D ++ + D E P+++ ++ ++LR + A+ L RE+ VL + E N L+ Sbjct: 197 DVTLADIVPDRDAE-PIEETIEHADLRTVIAGALAHLEPREREVLAFRFGLEGNEPHSLE 255 Query: 209 EIGAVLEVGESRVSQLHSQAIKRLR 233 + A + R+ Q+ ++AI RLR Sbjct: 256 DAAAYFGIARERIRQIEARAIARLR 280 >UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=8 Tax=Planctomycetaceae RepID=D2R4L7_9PLAN Length = 320 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 14/205 (6%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSV 93 + L DL++ G +GLL AVE +D GT F+TYA Q I+ A+++ ++ +P + Sbjct: 98 GLSLQDLIEEGNLGLLRAVEGFDPAVGTRFSTYASYWIKQSIKRALINSAKTIR-IPAYM 156 Query: 94 RRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEW--RE 151 + +A +L +ELGR T EVA LG+ +++ + ++++ + Sbjct: 157 VELLSKWRRATARLTEELGRGPTPEEVARVLGL---AKKKLPIIKKAIRIYNSTPQTDQS 213 Query: 152 EHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNL 207 E G S+ + D + +NP +L++ ++ + VME + T+ RE VL + + L Sbjct: 214 EAGWSLGEIVMDERLKNPEDELVEQDVLKHVMEMLHTMDSREATVLRMRFGLGDTTPHTL 273 Query: 208 KEIGAVLEVGESRVSQLHSQAIKRL 232 KEIG L + RV Q+ ++A+ +L Sbjct: 274 KEIGESLGLTRERVRQIETEALGKL 298 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 23/210 (10%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAR 98 + DDL+Q G +GLL AV R+D +G F+TYA +R +++ + + R++R Sbjct: 221 MSFDDLIQEGNLGLLKAVGRFDHTKGNRFSTYATWWVRQSIIRGIYDKT---RTIRLPVH 277 Query: 99 EVA------QAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYD----E 148 + + +L +ELGR + E+AER + + D QM+L T +Q S + E Sbjct: 278 FIELKNLFFKVFYELLKELGREPSPQEIAERAKLPL-DKVQMVL-TLAAQPISLETPIGE 335 Query: 149 WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEE 204 + GD IE D + +P+++ D L + + +L RE+ +L L + Q Sbjct: 336 DEQRLGDFIE----DERAASPMEECSDRELAEITRSLLSSLQPREEKILRLRFGIDGQPA 391 Query: 205 LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 L++IG +V + R+ Q+ +A+++LR Sbjct: 392 ETLEKIGKTFKVSKERIRQIEKKALRKLRN 421 >UniRef50_P07860 RNA polymerase sigma-F factor n=127 Tax=Bacteria RepID=RPSF_BACSU Length = 255 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 103/199 (51%), Gaps = 8/199 (4%) Query: 40 ELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW--VPRSVRRNA 97 E DDL Q G IGLL +V+++D F+TYAV I G + +R V RS++ Sbjct: 58 EPDDLFQIGCIGLLKSVDKFDLTYDVRFSTYAVPMIIGEIQRFIRDDGTVKVSRSLKELG 117 Query: 98 REVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI 157 ++ +A +L + LGR T E+A+ L I+ D + + + ++ E GD I Sbjct: 118 NKIRRAKDELSKTLGRVPTVQEIADHLEIEAEDV-VLAQEAVRAPSSIHETVYENDGDPI 176 Query: 158 ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVG 217 L+ D +N ++ D + + EAI L EREKL++ L Y ++ E+ L + Sbjct: 177 TLL--DQIADNSEEKWFD---KIALKEAISDLEEREKLIVYLRYYKDQTQSEVAERLGIS 231 Query: 218 ESRVSQLHSQAIKRLRTKL 236 + +VS+L + +K+++ ++ Sbjct: 232 QVQVSRLEKKILKQIKVQM 250 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 114/236 (48%), Gaps = 25/236 (10%) Query: 18 QRYVPLVRHEALRLQVRLPASV---------ELDDLLQAGGIGLLNAVERYDALQGTAFT 68 +R + + E ++ +RL S+ DL+Q G IGL+ AV++++ +G F+ Sbjct: 341 EREISQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFS 400 Query: 69 TYAV----QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 TYA Q I A+ D+ R+ VP + +V + QE GR+ E+AERL Sbjct: 401 TYATWWIRQAITRAISDQART-IRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERL 459 Query: 125 GIDIAD---YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 G + + + + + ++ E E GD I D + E P+ S L ++ Sbjct: 460 GWPVQKVKMVKNVAREPISLEIPVGSEEDSELGDFI----PDTEVETPVNAAASSILAEQ 515 Query: 182 VMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + + TLP RE+ V+ + + + L+E+G +V R+ Q+ ++A++RLR Sbjct: 516 IRQVLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLR 571 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 106/204 (51%), Gaps = 12/204 (5%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVR 94 ++L DL+Q G IGL+ AVE+++ +G F+TYA Q + A+ D+ R+ +P + Sbjct: 340 LQLLDLVQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIR-IPVHMI 398 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 + + + +++ GR T E+AE LG+DIA + +L + S D Sbjct: 399 DTINRMLKGAKEYQRQHGREPTPEEMAEHLGVDIAKVKSIL--KIAKEPLSLDTPVGSGE 456 Query: 155 DS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKE 209 DS + +D +P + + +L+ + ++TL RE++VL L + +L L+E Sbjct: 457 DSFLSDFIEDADSTSPDEATIYDSLQDNLARVLKTLTPREEMVLRLRFGIDTATDLTLEE 516 Query: 210 IGAVLEVGESRVSQLHSQAIKRLR 233 +G V R+ Q+ ++A+K+L+ Sbjct: 517 VGENFSVTRERIRQIEAKALKKLK 540 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA Q I A+ D+ R+ +P + Sbjct: 498 DLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTI-RIPVHMIETIN 556 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 ++ + L QE+GR T E+AE++ + + R++L EE GD Sbjct: 557 KLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGD 616 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D +P +++ NL ++ + + TL RE+ VL + + + + L+E+G Sbjct: 617 FIE----DKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVG 672 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 EV R+ Q+ ++A+++LR Sbjct: 673 QDFEVTRERIRQIEAKALRKLR 694 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 10/200 (5%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G +GL+ A E++D +G F+TYA Q I A+ D+ R+ +P V Sbjct: 159 DLIQEGTLGLVRAAEKFDYRKGFKFSTYATWWIRQAIARALADKARTI-RIPVHVVEKLN 217 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 ++ +A +L ELGR T E+A+ GID + + EE + + Sbjct: 218 KIGRAERKLVTELGREPTAEEIADVTGIDPEEVDSIKRSAQAPVSLEKPVGDEEESEFGQ 277 Query: 159 LVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVL 214 + D+ E+P ++ + ++ + EA+E L RE+ VL L Y + L E+G Sbjct: 278 FIADERA-ESPYERAAEILTKEALREALENLSYRERRVLELRYGLGGEHPRTLDEVGRTF 336 Query: 215 EVGESRVSQLHSQAIKRLRT 234 V R+ Q+ +Q++K+L++ Sbjct: 337 NVTRERIRQIENQSLKKLQS 356 >UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1P1_HERA2 Length = 303 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 36/221 (16%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPR------- 91 + DL+Q G IGL+NA+ER+DA +G F+TYA IR A+ L ++ + R Sbjct: 98 LPFQDLIQEGNIGLMNAIERFDATKGVRFSTYATWWIRQAITRSLANQGRLIRLPVHRWE 157 Query: 92 ---SVRRNAREVAQAIGQLEQELGRNATETEVAERLGI---DIADYRQMLLDTNNSQLFS 145 VRR ++ QA LGR + E++ LG+ I D LL + Sbjct: 158 LLIKVRRIETKLLQA-------LGREPSANEISTALGVPEEKICD----LLSIAQVPISL 206 Query: 146 YDEWREEH----GDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY 201 EE GDS+ D E+ L+ LL S Q + L E+E+ VLTL Y Sbjct: 207 ATPKNEETDMLLGDSL----PDEDWEDELECLLTSIDAQYTRAMLNQLSEQEQEVLTLRY 262 Query: 202 ----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + +L E+GAV+ R+ Q+ + A++ LRT+L + Sbjct: 263 GLKDGKSRSLSEVGAVVGRTRQRIQQIEAGALQVLRTQLSQ 303 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G +GL+ AV+++D +G F+TYA Q I A+ D+ R+ +P + Sbjct: 159 DLIQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTI-RIPVHMVETIN 217 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNN--SQLFSYDEWREEH-GD 155 ++ + L QELG++ T ++AER+ + R++L S E + H GD Sbjct: 218 KLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGD 277 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D ENP+ LR+++ E ++TL +RE+ VL L + + L+++G Sbjct: 278 FIE----DEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVG 333 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 V V R+ Q+ ++A+++LR Sbjct: 334 KVFNVTRERIRQIEAKALRKLR 355 >UniRef50_B0N2H4 RNA polymerase sigma factor n=4 Tax=Bacteria RepID=B0N2H4_9FIRM Length = 258 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 12/201 (5%) Query: 41 LDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW--VPRSVRRNAR 98 +DDL Q G IGL+ A+E ++ G F+TYAV I G M LR + RS+R A Sbjct: 64 MDDLFQVGMIGLIKAIENFNTSFGLKFSTYAVPLIIGEMKRYLRDNHQIKISRSIRDLAY 123 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE 158 +V + +L R T E+A L ++ + + LL TN+ +E + + G++++ Sbjct: 124 KVLKVKDSYITKLNREPTINELANELEVEPSAVIEALLSTNSVSSLQ-EEVKNDDGNNLK 182 Query: 159 L---VTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLE 215 + +TDD + + +D + +A+++L ++E V+ Y E L+ EI L Sbjct: 183 MIDSITDDKTVVSRTNETID------LYDALKSLNQKEHRVIKQRYFEGLSQSEIAKELF 236 Query: 216 VGESRVSQLHSQAIKRLRTKL 236 + +++VS++ +A+ L L Sbjct: 237 ISQAQVSRIERKALDNLHNYL 257 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 10/205 (4%) Query: 37 ASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRS 92 +++EL DL+Q GG+GL+ AVE+++ +G F+TYA Q I A+ D+ + +P Sbjct: 355 SNLELSDLIQEGGLGLMKAVEKFEYKRGFKFSTYATWWIRQSINRAIADQANT-IRIPVH 413 Query: 93 VRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREE 152 ++ ++ + + QE GR + + ++ L + + + +L + S +E Sbjct: 414 MKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLSMEKVKGVLKIMQDPISLSTPVGEDE 473 Query: 153 HGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEEL----NLK 208 + +E +D NP D +Q V E + TL ERE ++ L + + L+ Sbjct: 474 DSN-LEDFIEDKAGANPTVTASDFLRKQEVSEVLNTLSEREAKIIRLRFGIDSGYPRTLE 532 Query: 209 EIGAVLEVGESRVSQLHSQAIKRLR 233 E+G + V RV Q+ ++AI++LR Sbjct: 533 EVGKMFNVTRERVRQIEAKAIRKLR 557 >UniRef50_UPI0001C31B67 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B67 Length = 261 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 96/216 (44%), Gaps = 8/216 (3%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 ++PLV A R P LDDL+Q +GL+ A++R+D G F ++A+ I G + Sbjct: 49 FMPLVHKLARRYH---PGPEPLDDLVQVACVGLVKAIDRFDPDAGPRFASFAIPTITGEL 105 Query: 80 LDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL 136 R W VPR V+ +A + A+ +L + GR+ T E++ G+D + L Sbjct: 106 RRHFRDTTWSVHVPRRVQEDALRLRHAMTELSERPGRSPTIHELSAATGLDDEQITEALH 165 Query: 137 DTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLV 196 T S D D + D + + R + + LP R++ + Sbjct: 166 ATTAKAASSLDRPVPGQDDGSATIGDTLGCDE--YGFALAEHRTTIGPRLRALPLRDREI 223 Query: 197 LTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 L L + E++ EI + + +VS+L +A+ L Sbjct: 224 LYLRFAEDMTQHEIAQRIGCSQMQVSRLLRRALDAL 259 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 20/234 (8%) Query: 17 WQRYVPLVRHEALRLQVRLPASV---------ELDDLLQAGGIGLLNAVERYDALQGTAF 67 + R + + + +R +RL S+ L DL+Q G +GL+ AV R+D +G F Sbjct: 204 YSRSIEVAKDTMIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMRAVFRFDYTKGNKF 263 Query: 68 TTYAV----QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 +TYA Q I A+LD+ R+ +P + +A L +ELGR T E+++ Sbjct: 264 STYASWWIRQAITRAILDKTRTIR-LPVHFLELRSQFFKAFYALFKELGREPTPLEISKT 322 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + +L + + S + + ++ ++ + ++P + + + L RV Sbjct: 323 TNLPMDKILSIL--EASREPISLETPVGDDDSTLGDFLENQESQSPYEAVQNRELSGRVT 380 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E + TL +RE+ ++ L + + E L+EIG V R+ Q+ +A+ RLR Sbjct: 381 EILSTLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNRLR 434 >UniRef50_B9YC99 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YC99_9FIRM Length = 241 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 16/209 (7%) Query: 34 RLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW--VPR 91 R DL Q G +GL+ A+ +D F+TYAV I G + R + R Sbjct: 39 RFKTHSSAQDLFQIGCLGLMKAINNFDTSYNVMFSTYAVPIILGEIKRYFRDEGQMKISR 98 Query: 92 SVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDE-WR 150 S++ +V ++ +L Q+L R T E+ E LG++ D ML N L S DE + Sbjct: 99 SLKERYLQVQKSRERLAQKLQREPTYREIGEDLGVEENDV--MLAMEANQFLASMDEAFY 156 Query: 151 EEHGDSIEL---VTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNL 207 ++ G +I+L V D H + P++ L I L +RE+ ++ L Y+ E N Sbjct: 157 QKDGSTIKLEDKVEDRHGEDVPMKLALKKE--------IGHLEQREQYLIYLRYELEYNQ 208 Query: 208 KEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + I + + + +VS+L + + +L+ KL Sbjct: 209 EAIAKKMGISQVQVSRLEKKILNKLKCKL 237 >UniRef50_D2PPQ2 RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PPQ2_9ACTO Length = 272 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 6/203 (2%) Query: 40 ELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRN 96 E DDL Q +GL+ A Y T F +A+ IRG + R W +PR ++ Sbjct: 69 EADDLEQVAYLGLVKAAHHYRLDADTPFIGFAIPTIRGEVKRYFRDCAWTVRIPRRLQEM 128 Query: 97 AREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS 156 +A + LEQ L R T E+A+ LG+++++ Q L + S D E D Sbjct: 129 QGTIAAKLPYLEQLLNREPTPAEIADHLGVELSEVEQALAAKGCFNVLSLDRPAEADADL 188 Query: 157 IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEV 216 + + QL ++ Q V+ L ERE+ +L L + E EIGA + V Sbjct: 189 TLADVVADDDDATIDQLEAVDMLQPVL---ADLGERERRILQLRFVEGWTQSEIGADIGV 245 Query: 217 GESRVSQLHSQAIKRLRTKLGKL 239 + +VS++ + + LR KL + Sbjct: 246 SQMQVSRVLRRILDDLRDKLSPV 268 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 24/235 (10%) Query: 24 VRHEALRLQVRLPASVELD---------DLLQAGGIGLLNAVERYDALQGTAFTTYAV-- 72 R ++ +RL + +D DL+ G IGL+ AVER+D +G +TYA Sbjct: 83 ARDHMIKANLRLVVKIAMDYKDFGLPLLDLISEGNIGLIKAVERFDPRKGGKLSTYAAWW 142 Query: 73 --QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 Q I+ A+ ++ ++ +P + ++ + L +ELGR T+ E+A L I + Sbjct: 143 IKQSIKRALANQSKT-IRLPVHLVDKISKMRRTAMALTEELGREPTDEELAIELQIPTSK 201 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSI---ELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 L + + + S D E GDS E+V DD+ +P + L + NL + + Sbjct: 202 VAH--LKSVSVRPASLDAPVGEEGDSATFGEIVGDDNA-VSPFEGLREKNLNSDLHAMVA 258 Query: 188 TLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +L ERE ++ L + ++EL L+E+G V R+ QL A+ ++R + K Sbjct: 259 SLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIRQLEYLALSKMRKAMAK 313 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 17/202 (8%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G +GL+ A E++D +G F+TYA Q I A+ D+ R+ +P + Sbjct: 182 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT-IRLPVHLYETIS 240 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 + + L QE+GR TE E+A R+ + I R + +EE GD Sbjct: 241 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 300 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIG 211 IE E P Q+ + LR+ + + +++L RE+ VL L Y + L+EIG Sbjct: 301 FIE-----SDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIG 355 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 + V R+ Q+ ++A+++LR Sbjct: 356 QIFNVTRERIRQIEAKALRKLR 377 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 18/203 (8%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDEL--RSRDW-VPRSVRRNARE 99 DL+Q G IGL+ AV+++D +G F+TYA IR A+ + +SR+ +P + Sbjct: 152 DLIQEGNIGLMRAVQKFDWRKGHRFSTYATWWIRQAITRAIGDKSREIRLPAHINEELNR 211 Query: 100 VAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI-- 157 + + QL Q + R T E+AE+ G R++L Q S D E DS Sbjct: 212 INRIRQQLSQTVNREPTPEEIAEKAGTSPERVRELL--GYLQQPVSLDTPVGEEADSTLG 269 Query: 158 ELVTDDHQRENPLQQLLDSNLR---QRVMEAIETLPEREKLVLTLYY----QEELNLKEI 210 E V D R NP ++ D L+ RV++ E L REK VL L Y +L+++ Sbjct: 270 EFVPD--VRANPEEEATDEVLKTEMDRVLD--EVLTPREKRVLQLRYGLGDGHTYSLEKV 325 Query: 211 GAVLEVGESRVSQLHSQAIKRLR 233 G L V RV QL QA+++LR Sbjct: 326 GRELGVTRERVRQLEKQALEKLR 348 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA IR A+ D+ R+ +P + Sbjct: 473 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI-RIPVHMIETIN 531 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSY---DEWREEHGD 155 ++ + Q+ E+GR T E+AE+LG+ + R++L D+ GD Sbjct: 532 KIVRTQRQMLHEIGREPTPEELAEKLGLPLEKIRKVLKIAKEPISLETPIGDDEDSNLGD 591 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELN----LKEIG 211 IE D P+ + SNLR+ + +L RE+ VL + + +N L+E+G Sbjct: 592 FIE----DKMALLPVDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVG 647 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 V R+ Q+ ++A+++L+ Sbjct: 648 QQFSVTRERIRQIEAKALRKLK 669 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 12/205 (5%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVR 94 V DL+Q G +GL+ A E+++A +G F+TYA IR + + ++ +P + Sbjct: 147 GVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGITRCIANQARTIRLPVHMV 206 Query: 95 RNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG 154 R + + +L + GR TE E+AE LGI + R ++ + S D + G Sbjct: 207 DKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKKLR--MIQQAAALPLSLDVPVGQEG 264 Query: 155 DSI--ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLK 208 +S +L+ D+ Q E P +++L +LRQ V A++ L E+ VL L Y Q L+ Sbjct: 265 ESRLGDLLPDERQ-EQPFEEILVQSLRQDVRSAMQALKPIERQVLELRYGLDGQRARTLR 323 Query: 209 EIGAVLEVGESRVSQLHSQAIKRLR 233 E+G + R+ Q+ A+++LR Sbjct: 324 EVGDHFNLTRERIRQIERDALRKLR 348 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 107/205 (52%), Gaps = 12/205 (5%) Query: 38 SVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSV 93 ++L DL+Q G IGL+ AVE+++ +G F+TYA Q + A+ D+ R+ +P + Sbjct: 325 GLQLLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQGRTIR-IPVHM 383 Query: 94 RRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH 153 + + + +++ GR T E+A+ LG+++A + +L + S D Sbjct: 384 IDTINRMLKGAKEFQRQHGREPTPDEMAQHLGVEVAKVKSVLKIA--KEPLSLDTPVGNS 441 Query: 154 GDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLK 208 DS + +D + +P + + NL+ + ++TL RE++VL L + +L L+ Sbjct: 442 NDSFLADFIEDTEAASPDEATIYENLQSNLRRVLKTLSPREEMVLRLRFGLDTAMDLTLE 501 Query: 209 EIGAVLEVGESRVSQLHSQAIKRLR 233 E+G V R+ Q+ ++A+K+L+ Sbjct: 502 EVGENFAVTRERIRQIEAKALKKLK 526 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 104/202 (51%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGAMLDELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA Q I A+ D+ R+ +P + Sbjct: 429 DLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQART-IRIPVHMIETIN 487 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH---GD 155 ++ + L QE GR T E+AE++ + + R++L EE GD Sbjct: 488 KLIRTSRYLVQEYGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGD 547 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIG 211 IE D +P + +++ NL ++ + ++TL RE+ VL + + + + L+E+G Sbjct: 548 FIE----DKSVISPAEAVINMNLAEQTRKVLKTLTPREEKVLRMRFGIGEKSDHTLEEVG 603 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 EV R+ Q+ ++A+++LR Sbjct: 604 QDFEVTRERIRQIEAKALRKLR 625 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA IR A+ D+ R+ +P + Sbjct: 442 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI-RIPVHMIETIN 500 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSY---DEWREEHGD 155 ++ + Q+ E+GR T E+AE+L + + R++L DE GD Sbjct: 501 KIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGD 560 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELN----LKEIG 211 IE D P+ + SNLR+ + +L RE+ VL + + +N L+E+G Sbjct: 561 FIE----DKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVG 616 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 V R+ Q+ ++A+++L+ Sbjct: 617 QQFSVTRERIRQIEAKALRKLK 638 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 13/223 (5%) Query: 23 LVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIRGA 78 +V H A + Q R + L DLLQ G +GL+ ++E++ G F TYA Q +R A Sbjct: 319 MVVHIAKQYQGR---GLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKA 375 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 + R+ +P +V +V++A E N T+ E+A+R+GI ++L Sbjct: 376 IFQHSRTIR-LPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMA 434 Query: 139 NNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLT 198 W ++ + + +T D + E P + +R+ V+ + L RE+ ++ Sbjct: 435 RMPLSMQQTVWADQE-TTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIR 493 Query: 199 LYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 L Y ++ +L EIG+V + + RV QL S+A+ +L+ L Sbjct: 494 LRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLA 536 >UniRef50_C6Y0F4 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0F4_PEDHD Length = 289 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 14/209 (6%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLD---ELRSRDWVPRSVRR 95 ++L DL+ G IGL+ A R+DA +G F T+AV +R A+L E R +P + Sbjct: 74 LKLGDLINEGNIGLIKAAHRFDATRGFKFITFAVWWVRQAILQAIAEQRRLIRLPGNQLL 133 Query: 96 NAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSY---DEWREE 152 + QA+ +LEQ+L R T E+A G + ++D + F+Y D +EE Sbjct: 134 GISRLNQAVLKLEQQLERMPTVEELAVYTGFTV----DKVMDYTANAAFTYSLDDVIKEE 189 Query: 153 HGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLK 208 G ++ V D L ++L + A++ L +RE+ ++ L+Y + ++ Sbjct: 190 SGSTLMEVIADEATHQTDHFTLAASLSTDLNRALDILSKREQKIIILFYGLNGYPQTAIE 249 Query: 209 EIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 ++ +L++ + R+ QL +A K L G Sbjct: 250 DMQKILKLSKERIRQLKDKAHKTLGLNCG 278 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 16/202 (7%) Query: 43 DLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAML----DELRSRDWVPRSVRRNAR 98 DL+Q G IGL+ AV++++ +G F+TYA IR A+ D+ R+ +P + Sbjct: 508 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART-IRIPVHMIETIN 566 Query: 99 EVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSY---DEWREEHGD 155 ++ + Q+ E+GR T E+AE+L + + R++L DE GD Sbjct: 567 KIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGD 626 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELN----LKEIG 211 IE D P+ + SNLR+ + +L RE+ VL + + +N L+E+G Sbjct: 627 FIE----DKNVVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVG 682 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 V R+ Q+ ++A+++L+ Sbjct: 683 QQFSVTRERIRQIEAKALRKLK 704 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 22/224 (9%) Query: 26 HEALRLQVRLPAS-----VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV----QRIR 76 H LRL V + + DL+Q G +GL+ A E++D +G F+TYA Q I Sbjct: 149 HSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAIT 208 Query: 77 GAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL 136 A+ D+ R+ +P + + + L QE+ R TE E+A R+ + I R + Sbjct: 209 RAIADQSRT-IRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAK 267 Query: 137 DTNNSQLFSYDEWREEH---GDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 +EE GD IE ENP ++ + LR+ + ++TL RE Sbjct: 268 SAQLPISLETPIGKEEDSRLGDFIE-----ADGENPEDEVSKNLLREDLENVLDTLSPRE 322 Query: 194 KLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 323 RDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0A2E9 RNA polymerase sigma factor for flagellar operon... 313 3e-84 UniRef50_UPI0001B5857A putative RNA polymerase sigma factor n=1 ... 265 9e-70 UniRef50_A0LC35 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 262 6e-69 UniRef50_C7QA49 RNA polymerase sigma factor n=7 Tax=Actinobacter... 261 1e-68 UniRef50_C7R3C2 RNA polymerase sigma factor n=1 Tax=Jonesia deni... 259 4e-68 UniRef50_Q47I32 RNA polymerase sigma factor n=1 Tax=Dechloromona... 258 9e-68 UniRef50_P17211 RNA polymerase sigma factor whiG n=26 Tax=Bacter... 258 2e-67 UniRef50_Q6MI54 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 257 2e-67 UniRef50_B8I3M5 RNA polymerase sigma factor n=3 Tax=Clostridium ... 257 2e-67 UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia ... 257 3e-67 UniRef50_A4FMD9 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 256 7e-67 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 254 1e-66 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 254 1e-66 UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacter... 254 3e-66 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 253 3e-66 UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacte... 253 3e-66 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 253 3e-66 UniRef50_B0K1Q2 RNA polymerase sigma factor n=11 Tax=Thermoanaer... 253 5e-66 UniRef50_Q04SE0 RNA polymerase sigma factor n=12 Tax=Bacteria Re... 252 7e-66 UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Strep... 252 8e-66 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 251 1e-65 UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmic... 251 1e-65 UniRef50_C0ZF72 RNA polymerase sigma factor n=5 Tax=Bacillales R... 251 2e-65 UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacter... 251 2e-65 UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacter... 250 2e-65 UniRef50_Q1NP84 RNA polymerase sigma factor n=1 Tax=delta proteo... 250 3e-65 UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily... 250 3e-65 UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 250 3e-65 UniRef50_A8MHG6 RNA polymerase sigma factor n=2 Tax=Alkaliphilus... 250 3e-65 UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellu... 249 4e-65 UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria Re... 249 4e-65 UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actino... 249 5e-65 UniRef50_C9YEL0 RNA polymerase sigma factor n=1 Tax=Curvibacter ... 249 5e-65 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 248 1e-64 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 248 1e-64 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 248 1e-64 UniRef50_D0FQ53 RNA polymerase sigma factor n=2 Tax=Erwinia pyri... 248 1e-64 UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermot... 248 1e-64 UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 248 1e-64 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 248 1e-64 UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi ... 248 2e-64 UniRef50_B7ATU0 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 248 2e-64 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 247 2e-64 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 247 3e-64 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 247 3e-64 UniRef50_A5G8Y3 RNA polymerase sigma factor n=9 Tax=Desulfuromon... 247 3e-64 UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi ... 246 4e-64 UniRef50_Q1Q6T7 Strongly similar to RNA polymerase sigma factor ... 246 4e-64 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 246 4e-64 UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothr... 246 4e-64 UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacter... 246 4e-64 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 246 5e-64 UniRef50_P10726 RNA polymerase sigma-D factor n=24 Tax=Bacillale... 246 6e-64 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 246 6e-64 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 245 9e-64 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 245 9e-64 UniRef50_P29248 RNA polymerase sigma factor for flagellar operon... 245 9e-64 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 245 1e-63 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 245 1e-63 UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria Re... 244 1e-63 UniRef50_A1HN10 RNA polymerase sigma factor n=4 Tax=Veillonellac... 244 1e-63 UniRef50_B8FK28 RNA polymerase sigma factor n=2 Tax=Proteobacter... 244 1e-63 UniRef50_A0LI23 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 244 1e-63 UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteo... 244 1e-63 UniRef50_Q5ZUL1 RNA polymerase sigma factor n=6 Tax=Legionella p... 244 2e-63 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 244 2e-63 UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Prote... 244 2e-63 UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria R... 244 2e-63 UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphapr... 243 3e-63 UniRef50_C8QWD0 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 243 3e-63 UniRef50_D1BJ83 RNA polymerase sigma factor n=1 Tax=Sanguibacter... 243 3e-63 UniRef50_C1RMF4 RNA polymerase sigma factor n=1 Tax=Cellulomonas... 243 4e-63 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 243 5e-63 UniRef50_Q2RKC7 RNA polymerase sigma factor n=1 Tax=Moorella the... 243 5e-63 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 243 6e-63 UniRef50_Q0AYK8 RNA polymerase sigma factor n=1 Tax=Syntrophomon... 242 7e-63 UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia Re... 241 1e-62 UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter ... 241 1e-62 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 241 1e-62 UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Prote... 241 1e-62 UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella ... 241 2e-62 UniRef50_A0Q044 RNA polymerase sigma factor n=30 Tax=Clostridium... 241 2e-62 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 240 2e-62 UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 T... 240 2e-62 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 240 2e-62 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 240 3e-62 UniRef50_C0QXY0 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 239 4e-62 UniRef50_C4ZA81 RNA polymerase sigma factor n=3 Tax=Clostridiale... 239 5e-62 UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacte... 239 5e-62 UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria Rep... 239 8e-62 UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia Re... 238 1e-61 UniRef50_C0GJF8 RNA polymerase sigma factor n=1 Tax=Dethiobacter... 238 1e-61 UniRef50_D1C190 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 ... 238 1e-61 UniRef50_UPI00016C0EF8 RNA polymerase, sigma 28 subunit, FliA/Wh... 238 1e-61 UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subf... 238 1e-61 UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E... 238 2e-61 UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellul... 238 2e-61 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 238 2e-61 UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 238 2e-61 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 237 2e-61 UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcale... 237 3e-61 UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellul... 237 3e-61 UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea... 237 3e-61 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 236 3e-61 UniRef50_Q2LT13 RNA polymerase sigma factor n=1 Tax=Syntrophus a... 236 3e-61 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 236 4e-61 UniRef50_B2A375 RNA polymerase sigma factor n=1 Tax=Natranaerobi... 236 4e-61 UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 236 4e-61 UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilo... 236 5e-61 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 236 6e-61 UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 236 6e-61 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 236 7e-61 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 235 8e-61 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 235 9e-61 UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 235 9e-61 UniRef50_B8FTP4 RNA polymerase sigma factor n=2 Tax=Desulfitobac... 235 1e-60 UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamy... 235 1e-60 UniRef50_B8CYP4 RNA polymerase sigma factor n=1 Tax=Halothermoth... 235 1e-60 UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrel... 235 1e-60 UniRef50_D2QYQ7 RNA polymerase, sigma 28 subunit, FliA/WhiG n=7 ... 234 1e-60 UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium ... 234 1e-60 UniRef50_B1I5J3 RNA polymerase sigma factor n=3 Tax=Peptococcace... 234 2e-60 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 234 2e-60 UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 234 2e-60 UniRef50_B8KP63 RNA polymerase sigma factor n=1 Tax=gamma proteo... 234 2e-60 UniRef50_A4J745 RNA polymerase sigma factor n=1 Tax=Desulfotomac... 234 2e-60 UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomyceta... 233 3e-60 UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister in... 233 4e-60 UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacte... 233 5e-60 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 233 5e-60 UniRef50_C1F998 RNA polymerase sigma factor n=1 Tax=Acidobacteri... 233 5e-60 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 232 7e-60 UniRef50_Q0EZ50 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 232 8e-60 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 232 1e-59 UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsi... 232 1e-59 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 231 1e-59 UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria Re... 231 1e-59 UniRef50_D2SFP2 RNA polymerase, sigma 28 subunit, Sig B/F/G subf... 231 2e-59 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 231 2e-59 UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 230 3e-59 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 230 3e-59 UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci R... 230 3e-59 UniRef50_A9IKM0 RNA polymerase sigma factor n=9 Tax=Betaproteoba... 230 4e-59 UniRef50_B2V6T3 RNA polymerase sigma factor n=6 Tax=Aquificales ... 229 6e-59 UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. ... 229 6e-59 UniRef50_UPI0000E0E61A flagellar biosynthesis sigma factor n=2 T... 229 6e-59 UniRef50_B9L5B4 RNA polymerase sigma-D factor (Sigma-28) n=1 Tax... 228 1e-58 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 228 1e-58 UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=... 228 1e-58 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 228 1e-58 UniRef50_Q1IR61 RNA polymerase sigma factor n=1 Tax=Candidatus K... 227 2e-58 UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma ... 227 2e-58 UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacter... 227 2e-58 UniRef50_Q8EQV7 RNA polymerase sigma factor n=1 Tax=Oceanobacill... 227 2e-58 UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasma... 227 3e-58 UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 227 3e-58 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 227 3e-58 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 227 3e-58 UniRef50_Q254D7 DNA-directed RNA polymerase sigma 28 n=12 Tax=Ch... 226 4e-58 UniRef50_A0Z394 RNA polymerase sigma factor n=2 Tax=unclassified... 226 4e-58 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 226 4e-58 UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptospora... 226 6e-58 UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobact... 226 7e-58 UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia... 225 8e-58 UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 225 8e-58 UniRef50_B0P9X1 Putative uncharacterized protein n=1 Tax=Anaerot... 225 9e-58 UniRef50_C2KYZ5 RNA polymerase sigma factor n=1 Tax=Oribacterium... 225 1e-57 UniRef50_A3EPQ0 RNA polymerase sigma factor n=4 Tax=Leptospirill... 225 1e-57 UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 224 1e-57 UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 224 1e-57 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 224 2e-57 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 224 2e-57 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 224 2e-57 UniRef50_Q3A5E9 RNA polymerase sigma factor n=4 Tax=Deltaproteob... 224 2e-57 UniRef50_C0JS04 RNA polymerase sigma factor n=2 Tax=Streptomyces... 224 2e-57 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 223 3e-57 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 223 3e-57 UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyano... 223 3e-57 UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus ... 223 4e-57 UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 223 4e-57 UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteri... 223 5e-57 UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermob... 223 5e-57 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 222 5e-57 UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicro... 222 5e-57 UniRef50_B9CP17 RNA polymerase sigma factor n=1 Tax=Atopobium ri... 222 6e-57 UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 222 7e-57 UniRef50_UPI0001C30F67 RNA polymerase, sigma 28 subunit, FliA/Wh... 222 7e-57 UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 222 8e-57 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 222 8e-57 UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, s... 222 9e-57 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 222 9e-57 UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus... 222 1e-56 UniRef50_A8F4U9 RNA polymerase, sigma 28 subunit, FliA/WhiG n=8 ... 221 1e-56 UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderi... 221 1e-56 UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogace... 221 2e-56 UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily... 221 2e-56 UniRef50_Q01PP5 RNA polymerase sigma factor n=1 Tax=Candidatus S... 221 2e-56 UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes... 221 2e-56 UniRef50_C9R9X4 RNA polymerase sigma factor n=1 Tax=Ammonifex de... 220 3e-56 UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 220 4e-56 UniRef50_B5JK56 RNA polymerase sigma factor, FliA/WhiG family n=... 220 4e-56 UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 220 4e-56 UniRef50_B1VUR9 RNA polymerase sigma factor n=10 Tax=Streptomyce... 220 4e-56 UniRef50_C0GLF1 RNA polymerase sigma factor n=1 Tax=Desulfonatro... 219 5e-56 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 219 6e-56 UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycet... 219 7e-56 UniRef50_A7HK15 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 ... 219 7e-56 UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 219 8e-56 UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria Rep... 219 8e-56 UniRef50_C0QA49 RNA polymerase sigma factor n=1 Tax=Desulfobacte... 219 8e-56 UniRef50_C1A543 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 219 9e-56 UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31... 219 9e-56 UniRef50_B1ZR25 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 ... 218 1e-55 UniRef50_C7I0T1 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 ... 218 1e-55 UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderia... 218 1e-55 UniRef50_Q1AW69 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 218 1e-55 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 218 1e-55 UniRef50_Q01T87 RNA polymerase sigma factor n=1 Tax=Candidatus S... 218 2e-55 UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID... 217 2e-55 UniRef50_A1V9R7 RNA polymerase sigma factor n=10 Tax=Desulfovibr... 217 2e-55 UniRef50_B5YIY5 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 217 2e-55 UniRef50_C5EM23 DNA-directed RNA polymerase specialized sigma su... 217 2e-55 UniRef50_Q67K31 RNA polymerase sigma factor related to flagellar... 217 3e-55 UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes R... 217 3e-55 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 217 3e-55 UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 217 3e-55 UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmiu... 217 3e-55 UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragmen... 217 3e-55 UniRef50_D1B696 RNA polymerase sigma factor n=2 Tax=Synergistace... 216 4e-55 UniRef50_B0MPC6 Putative uncharacterized protein n=1 Tax=Eubacte... 216 4e-55 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 216 4e-55 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 216 5e-55 UniRef50_C6NWP6 RNA polymerase sigma factor for flagellar operon... 216 5e-55 UniRef50_Q9RIS5 RNA polymerase sigma factor n=57 Tax=Streptomyce... 216 6e-55 UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea s... 215 8e-55 UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, s... 215 9e-55 UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera... 215 1e-54 UniRef50_D0MG99 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 ... 215 1e-54 UniRef50_Q1YV82 Flagellar biosynthesis sigma factor FliA n=1 Tax... 215 1e-54 UniRef50_C0ZT10 RNA polymerase sigma factor n=3 Tax=Rhodococcus ... 214 2e-54 UniRef50_Q5WFS6 RNA polymerase sigma factor n=1 Tax=Bacillus cla... 214 2e-54 UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria Rep... 214 2e-54 UniRef50_A4FLE7 RNA polymerase sigma factor n=2 Tax=Saccharopoly... 214 2e-54 UniRef50_C7LQN4 RNA polymerase sigma factor n=1 Tax=Desulfomicro... 214 2e-54 UniRef50_A4E6Q4 RNA polymerase sigma factor n=1 Tax=Collinsella ... 214 3e-54 UniRef50_Q3ADC4 RNA polymerase sigma factor for flagellar operon... 213 3e-54 UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteo... 213 3e-54 UniRef50_C0C1N2 RNA polymerase sigma factor n=1 Tax=Clostridium ... 213 3e-54 UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 T... 213 4e-54 Sequences not found previously or not previously below threshold: UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter ... 214 2e-54 >UniRef50_P0A2E9 RNA polymerase sigma factor for flagellar operon n=246 Tax=cellular organisms RepID=FLIA_SALTI Length = 239 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 224/239 (93%), Positives = 236/239 (98%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAV+RYD Sbjct: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYD 60 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQA+GQLEQELGRNATETEV Sbjct: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEV 120 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 AERLGI +A+YRQMLLDTNNSQLFSYDEWREEHGDSIELVT++HQ+ENPL QLL+ +LRQ Sbjct: 121 AERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQ 180 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 RVM+AIE+LPERE+LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL Sbjct: 181 RVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 >UniRef50_UPI0001B5857A putative RNA polymerase sigma factor n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B5857A Length = 327 Score = 265 bits (678), Expect = 9e-70, Method: Composition-based stats. Identities = 97/232 (41%), Positives = 145/232 (62%), Gaps = 2/232 (0%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + L Y PLV++ A R+ LP V++ DL+Q+G GL++A+E++D +G Sbjct: 90 KPDQTSRDRLVLHYAPLVKYVAGRVGTGLPTHVDVGDLVQSGIFGLVDAIEKFDPERGLR 149 Query: 67 FTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 F TYA+QRIRGA+LD+LRS+DWVPR+VR A+E A+A+ +L L R T+ E+A +GI Sbjct: 150 FETYAMQRIRGAILDDLRSQDWVPRAVRSKAKETARALERLGARLHRTPTDAELAGEMGI 209 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVT--DDHQRENPLQQLLDSNLRQRVME 184 + D R + + + ++ D+ LV D +P+ L+D + R+++ E Sbjct: 210 SLDDLRDFYGQLRLTSVVALEDLVAAGKDAGSLVDTLPDDGAVDPVAVLVDQDNRRQLAE 269 Query: 185 AIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 AI L +R+K+V++LYY E L L EIG VL V ESRVSQLH++A+ RLR KL Sbjct: 270 AIAQLTDRDKIVVSLYYFESLTLAEIGKVLGVTESRVSQLHTRAVMRLRAKL 321 >UniRef50_A0LC35 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LC35_MAGSM Length = 260 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 101/233 (43%), Positives = 153/233 (65%), Gaps = 3/233 (1%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + + + +Y PLVR+ A R+ ++LP SV+LDDL Q G +GL++AV ++D +G F T Sbjct: 23 SLSREEIILKYAPLVRYVAGRISMKLPQSVDLDDLYQVGVMGLIDAVSKFDPDRGIKFQT 82 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA RIRGA+LDELR+ DWVPR +R+NA ++ +A QLE + GR A + EVAE LGI + Sbjct: 83 YAEFRIRGAILDELRAIDWVPRQLRQNASQMQEAYNQLEAKFGRPAEDVEVAEHLGISLN 142 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTD---DHQRENPLQQLLDSNLRQRVMEAI 186 +Y + + + S+++ R + D V + D ++P++ + LR + +AI Sbjct: 143 EYHEQIDQVRGISIVSFEDIRPNNDDEEWDVLEVLADPSVQDPVEAIGLMELRHAMADAI 202 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 ETLPE+E+LV+TLYY EEL + EIG VL + ESR+SQLHS+A R+R ++ + Sbjct: 203 ETLPEKERLVVTLYYFEELTMSEIGEVLGLTESRISQLHSKAALRMRARIKRF 255 >UniRef50_C7QA49 RNA polymerase sigma factor n=7 Tax=Actinobacteria (class) RepID=C7QA49_CATAD Length = 411 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 143/230 (62%), Gaps = 5/230 (2%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y PLV++ A R++V LP +++ D + +G GL++A+ER++ + F TYA+ Sbjct: 179 RERLILHYSPLVKYVAGRVRVGLPGALDSADFVSSGIFGLIDAIERFEPHRHVKFETYAI 238 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA++DELR+ DW+PRS+R+ ARE+ QA +LEQE GR +E+E+A LGI + + R Sbjct: 239 ARIRGAIIDELRALDWIPRSLRQKAREIEQASVRLEQEFGRTPSESEIARELGIGLGELR 298 Query: 133 QMLLDTNNSQLFSYDE---WREEHGDSIELV--TDDHQRENPLQQLLDSNLRQRVMEAIE 187 Q+ + + + DE + GD I L+ +D +P+ R + A+ Sbjct: 299 QIFSKLSLVNVAALDELLALPTQSGDRIPLMETLEDGDAPDPVALFEVQETRALLARAVN 358 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 +LPER+K V+TLYY E + L +IG VL V ESRV Q+H++A+ LR KL Sbjct: 359 SLPERDKTVVTLYYFEGMTLAQIGEVLGVSESRVCQIHTKAVLTLRGKLS 408 >UniRef50_C7R3C2 RNA polymerase sigma factor n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3C2_JONDD Length = 283 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 131/228 (57%), Gaps = 4/228 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y PLV A R+ ++LP +VE DL+ G GL++A++++D + F TYA Sbjct: 49 REELILHYAPLVTMIAGRVGMKLPNTVEAADLVSYGMFGLIDAIDKFDPSRDIKFETYAS 108 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 R+RGA++DELR+ DW+PRSVR ARE +A LE L R T E+A+ LG+ D Sbjct: 109 TRVRGAIIDELRALDWIPRSVRSRAREYDRACEHLENTLHREPTSGEIAQHLGVPEKDVW 168 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE----NPLQQLLDSNLRQRVMEAIET 188 Q+ ++ + + DE ++ D +E +P Q +R+ + +A++ Sbjct: 169 QLQWQVSSGHVIALDEVVSTGDRVDQISAMDSVQETLAVDPAQSFAQGEMREILAQAVDH 228 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 L ERE+ V+TLYY + L EIG +L V ESRVSQ+HS I +LR +L Sbjct: 229 LNERERAVVTLYYFRSMTLSEIGKLLGVTESRVSQMHSAIIVKLRKQL 276 >UniRef50_Q47I32 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47I32_DECAR Length = 248 Score = 258 bits (661), Expect = 9e-68, Method: Composition-based stats. Identities = 111/233 (47%), Positives = 152/233 (65%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 +YTA G D+ L QR+VPLV+ A L RLP SV+ DDL+Q G IGLL+A++R+ Sbjct: 1 MYTAAGQPDREQLVQRFVPLVKRIAYHLMARLPPSVQFDDLVQNGMIGLLDAIDRFQEGF 60 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F TYA QRIRGAMLD LR DW+PR++RR R + AI QLE E GR +E E+AE Sbjct: 61 GAQFETYATQRIRGAMLDGLRENDWLPRNLRRELRRIETAINQLEHEHGRVPSEKELAEA 120 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 LG+ +ADY++ L D QL +D+ E + +P L D +++ ++ Sbjct: 121 LGMSLADYQKTLQDARGHQLVYFDDLAGEGDEGFLERHFTDNAADPAAILEDKSVKATLI 180 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 AI LPEREK+++ LYY+++LNL+EIG V+ V ESRV QLH+QAI RLR+++ Sbjct: 181 TAIGELPEREKMMMALYYEQDLNLREIGEVMGVTESRVCQLHTQAIARLRSQI 233 >UniRef50_P17211 RNA polymerase sigma factor whiG n=26 Tax=Bacteria RepID=RPSW_STRCO Length = 280 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 5/240 (2%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 S T + L Y PLV++ A R+ V LP +VE D + +G GL++A+E++D Sbjct: 37 SYKTTGDERLREQLILHYSPLVKYVAGRVSVGLPPNVEQADFVSSGVFGLIDAIEKFDVD 96 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 + F TYA+ RIRGAM+DELR+ DW+PRSVR+ AR V +A LE L R +E+EVA Sbjct: 97 REIKFETYAITRIRGAMIDELRALDWIPRSVRQKARNVERAYATLEARLRRTPSESEVAV 156 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-----SIELVTDDHQRENPLQQLLDSN 177 +GI + D + + + + + +E G+ S+ +D +NP++ D Sbjct: 157 EMGIAVEDLHAVFSQLSLANVVALEELLHAGGEGGGRLSLMDTLEDTAADNPVEVAEDRE 216 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LR+ + AI TLPEREK V+TLYY E L L EIG VL V ESRVSQ+H++++ +LR KL Sbjct: 217 LRRLLARAINTLPEREKTVVTLYYYEGLTLAEIGNVLGVTESRVSQIHTKSVLQLRAKLA 276 >UniRef50_Q6MI54 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI54_BDEBA Length = 261 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 105/228 (46%), Positives = 153/228 (67%), Gaps = 3/228 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L + Y PL++ A ++ VRLP+++ELDDL+ AG IGL++A+E+YD+ + F TYA Sbjct: 23 KDDLIREYAPLIKFIAQKIAVRLPSNIELDDLISAGVIGLMDAIEKYDSTRDNKFKTYAE 82 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+LDELR++DWVPRS+R A+ + + + QLE +LGR ++ EVA+ L + I ++ Sbjct: 83 FRIRGAILDELRAQDWVPRSIRDKAKLLDKTMVQLEADLGRTPSDEEVAKALNVSIDEFH 142 Query: 133 QMLLDTNNSQLFSYDE---WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 ++ L D+ + SI + + + +P QL N+++ V +AIE L Sbjct: 143 DLVNQVRPVSLLPIDQATSFSNTDKKSIMDILEGSRTNSPFNQLNVKNIKEVVAQAIEEL 202 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 PER++LVL+LYY E+LNLKEIG VL V ESRVSQLH+QA+ RLR KL Sbjct: 203 PERQRLVLSLYYYEDLNLKEIGQVLRVTESRVSQLHAQAVARLRAKLA 250 >UniRef50_B8I3M5 RNA polymerase sigma factor n=3 Tax=Clostridium RepID=B8I3M5_CLOCE Length = 254 Score = 257 bits (657), Expect = 2e-67, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 149/231 (64%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + K L +Y L+++ A RL + ++VE DDL+ G GL++A+E+YD +G F Sbjct: 17 KDAAAKEKLIIQYAYLIKYVAGRLSIYFGSNVEFDDLVGYGAFGLIDAIEKYDLAKGVKF 76 Query: 68 TTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 TYA RIRG+++D +R DWVPRS+R+ +E+ + ++E E G AT+ EVAE++G+ Sbjct: 77 ETYASLRIRGSIIDSIRDMDWVPRSLRQKNKELEKVYVEIENEKGHTATDKEVAEKMGLS 136 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 ++D+ ++L D N S + S DE+ E++ + + + + P L + ++Q + + I+ Sbjct: 137 MSDFYKLLNDVNVSSMMSLDEFMEQNYERGLEIFSESTEDKPEASLEFNEMKQLLADCID 196 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 LPE+EK V+T YY EEL LKEI A++ V ESR+SQLH++A+ R++ KL + Sbjct: 197 KLPEKEKAVITFYYFEELTLKEISAIMNVTESRISQLHTKALLRMKGKLFR 247 >UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 13/236 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 L + + LV A + R + DL+Q G +GL+ AV+++D +G Sbjct: 165 AEGDQYATDRLTESNLRLVVSIAKKYVGR---GLSFLDLIQEGNLGLIKAVDKFDYSKGY 221 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P + + + L QELGR TE E+A+ Sbjct: 222 KFSTYATWWIRQAITRSIADQSRTIRIPVHMSEVINKAYRISRSLLQELGREPTEEEIAK 281 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQR 181 + + + R+++ + + S D E DS + D P + L+ + Sbjct: 282 EMNLPVEKVREIMKISADP--ISLDTPIGEEDDSHLGDFIKDDTIMGPEDAAAYTMLQDQ 339 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + + TL ERE+ VL L + L+E+G V R+ Q+ ++A+++LR Sbjct: 340 IQKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLR 395 >UniRef50_A4FMD9 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=A4FMD9_SACEN Length = 311 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 154/228 (67%), Gaps = 2/228 (0%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y PLV++ A R+ LP+ VE+ DL+Q+G GL++A+E+++ +G F TYA+ Sbjct: 82 RDRLVLHYAPLVKYVAGRVGTGLPSHVEVSDLIQSGIFGLVDAIEKFEPERGLKFETYAM 141 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 QRIRGA+LD+LR++DWVPRSVR AR+V +A+ +LE +L R A++ E+AE L + + + R Sbjct: 142 QRIRGAILDDLRAQDWVPRSVRSRARDVERALERLEAKLQRTASDAELAEELELSVDELR 201 Query: 133 QMLLDTNNSQLFSYDE--WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 ++ + + + D+ + S+ D + E+P+ L+D + R+++ EA+E L Sbjct: 202 ELFAQLQMTSVVALDDLIGAGQTTSSLAETLPDDRAEDPVATLVDRDSRRQLAEAVERLS 261 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +R+++V+TLYY E L L EIG VL V ESRV QLH++A+ RLRTKL + Sbjct: 262 DRDRIVVTLYYFENLTLAEIGKVLGVTESRVCQLHTRAVLRLRTKLTE 309 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K L + + LV A R R + DL+Q G +GLL AVE++D +G Sbjct: 128 EGDEEAKRKLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLLKAVEKFDYRKGYK 184 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L QELGR T E+A+ Sbjct: 185 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKE 244 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 +GI R+++ + S + E DS + +D + P+++ + LR+++ Sbjct: 245 MGISEDKVREIMKIAQ--EPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQL 302 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E ++TL ERE+ VL L + + L+E+G + V R+ Q+ ++A+++LR Sbjct: 303 DEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A + K L + + LV A R R ++ DL+Q G +GL+ AV+++D +G Sbjct: 126 AGDIEAKQRLAEANLRLVVSIAKRYVGR---GMQFLDLIQEGNMGLMKAVDKFDYSKGFK 182 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L QELG++ T ++AER Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAER 242 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + R++L + S + E DS + +D ENP+ LR+++ Sbjct: 243 MDMTPDKVREILKIAQ--EPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQL 300 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 E ++TL +RE+ VL L + + L+++G V V R+ Q+ ++A+++LR Sbjct: 301 DEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQ 356 >UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacteria RepID=RPOD_RICBR Length = 641 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 10/231 (4%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+T Sbjct: 386 LQAKKDMIEANLRLVISIAKKYANR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 442 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ + Q+ ELG T E+A RL + Sbjct: 443 YATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEPTPAEIAARLSM 502 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 I R+++ + + +D P+ + SNLR+ + Sbjct: 503 PIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAIQSNLREVTTRVL 562 Query: 187 ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE+ VL + + + L+E+G +V R+ Q+ S+A+++L+ Sbjct: 563 ATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQ 613 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 EG + L Q + LV A + R + L DL+Q G IGL+ A E++D +G F Sbjct: 164 EGQAARERLIQANLRLVVSIAKKYLGR---GMSLLDLIQEGNIGLMRATEKFDYRKGYKF 220 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P V V + +++Q GR+ T E+A L Sbjct: 221 STYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIALEL 280 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 GI + R++L Q S + GDS + +D + P++ LR+++ Sbjct: 281 GIPVEKVRRVLEAAR--QTISLETPIGPEGDSVLADFIEDGKGATPMESASSHILREQID 338 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 A+E LPERE+ ++ L Y L+E+G + R+ Q+ ++ +++LR Sbjct: 339 SALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLR 392 >UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacteria RepID=RPSD2_BACSP Length = 377 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 135 NGDEEAKRRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNMGLIKAVEKFDHNKGFK 191 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL QELGR T E+A Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAE 251 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R+++ + S + E DS + +D + P L++++ Sbjct: 252 MELSVEKVREIMKIAQ--EPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQL 309 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL ERE+ VL L + + L+E+G V V R+ Q+ ++A+++LR Sbjct: 310 EDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 364 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 112/230 (48%), Gaps = 12/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K + + + LV A + R ++ DL+Q G IGL+ AV+++D +G F+TYA Sbjct: 412 AKQEMIKANLRLVVSIAKKYSNR---GLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYA 468 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 +R A+ + + +P + ++ + + Q+ E+GR T E++ RLG+++ Sbjct: 469 TWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLGMNV 528 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 R+++ + ++ + +D + P + ++LR+ + + T Sbjct: 529 EKIRKVMKIVKDPVSLESPIG-DDDSSTFGDCIEDKRAVKPENAAVLADLREITTKVLST 587 Query: 189 LPEREKLVLTLYY-----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L +E+ +L + + ++ L+E+G + V R+ Q+ ++A+++LR Sbjct: 588 LTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLR 637 >UniRef50_B0K1Q2 RNA polymerase sigma factor n=11 Tax=Thermoanaerobacterales RepID=B0K1Q2_THEPX Length = 246 Score = 253 bits (646), Expect = 5e-66, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 142/226 (62%), Gaps = 2/226 (0%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ + +Y+PLV+H +L + E +DL+ G IGL++A+E+Y +G F TYA Sbjct: 21 RNEIIIKYMPLVKHIVKKLIISDITQSEYEDLINQGVIGLIDAIEKYQPSKGVKFETYAT 80 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRG ++D LR +DW+PRS+++ R++ + + L+Q+ R T E+ E G++ D Sbjct: 81 LRIRGEIIDYLRKKDWMPRSLKKKYRKIEETVETLQQKYNREPTVEEITEACGLNETDVL 140 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 + L N S + S +E E + D + +NP +++L L++++ AIE LP++ Sbjct: 141 KTLSYINVSNINSLEEAIENN--FKLHAISDVELKNPEEEVLYKELKRKLANAIENLPDK 198 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E+LV+TLYY E+LN K+I +L + ESR+SQ+H++AIKR+R LG+ Sbjct: 199 ERLVITLYYYEDLNYKDISKILNLTESRISQIHTKAIKRIREILGE 244 >UniRef50_Q04SE0 RNA polymerase sigma factor n=12 Tax=Bacteria RepID=Q04SE0_LEPBJ Length = 266 Score = 252 bits (645), Expect = 7e-66, Method: Composition-based stats. Identities = 98/231 (42%), Positives = 149/231 (64%), Gaps = 4/231 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L ++Y PLV+H A R+ + +P +VE DDL+ G GLL+A+E++D + F TYA+ Sbjct: 29 RSYLVEKYSPLVKHVAGRIAIGMPQNVEFDDLVSYGVFGLLDAIEKFDPDRLIKFKTYAM 88 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRG++ DELRS DW+PRS+R+ A+++ Q IG LE + G+ + +A+ LGI + +Y Sbjct: 89 TRIRGSIFDELRSIDWIPRSIRQKAKQLEQIIGMLENKEGQQVDDDAIAKELGISMEEYN 148 Query: 133 QMLLDTNNSQLFSYDE----WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 +L + + L S ++ E S + NP + ++ ++EAI+T Sbjct: 149 SLLTKISGTSLVSLNDIWFLGDENDEVSFMETLESPMNMNPDTIIEKEEIKNVIVEAIKT 208 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 LPE+EK V+ LYY E+L LKEIG VLEV ESR+SQLH++A+ RLR+KLGK+ Sbjct: 209 LPEKEKKVIVLYYYEDLTLKEIGEVLEVTESRISQLHTRAVSRLRSKLGKV 259 >UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=UPI0001AF1456 Length = 430 Score = 252 bits (644), Expect = 8e-66, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 13/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G M K L + + LV A R R + + DL+Q G +GL+ AVE++D +G F+ Sbjct: 190 GRMAKRRLIEANLRLVVSVAKRYVGR---GLTMLDLVQEGNLGLIRAVEKFDYARGYKFS 246 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR AM L + VP V V + ++ QE GR T EVA L Sbjct: 247 TYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPTPEEVAAHLD 306 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + ++L + S E D ++ + +D +P++ LR+ + Sbjct: 307 LPPERVGEVLRLAQ--EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEA 364 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + TL ERE+ V+ L Y L+EIG + V R+ Q+ S+ + +LR Sbjct: 365 VLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDH 419 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 11/228 (4%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L + + LV A + R ++ DL+Q G IGL+ AV++YD +G F+TYA Sbjct: 352 KQVLVKANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKYDYKKGFKFSTYAT 408 Query: 73 QRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 IR A+ + + +P + ++ + L QELGR T E+A++ G+ Sbjct: 409 WWIRQAITRAIADQARTIRIPVHMIETINKLLRISRTLVQELGREPTPEEIAKKAGMPAD 468 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 R++L + + +E + +D +P Q +L LR ++ E + TL Sbjct: 469 KVRKILRTSQDPVSLETPIGSDEESH-LGDFIEDKTVLSPEQHMLKQALRLQLDEVLSTL 527 Query: 190 PEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ERE+ VL + E L+++G V R+ Q+ ++A+++LR Sbjct: 528 SEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 575 >UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmicutes RepID=RPOD_STAAN Length = 368 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + K L + + LV A R R + DL+Q G +GL+ AVE++D +G F Sbjct: 127 GDEVAKSRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNMGLIKAVEKFDFNKGFKF 183 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + QL Q+LGR+ E+ E + Sbjct: 184 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEM 243 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 + R++L + S + E DS + +D + ++P L++++ Sbjct: 244 DLPAEKVREVLKIAQ--EPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLE 301 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL +RE+ VL L + + L+E+G V V R+ Q+ ++A+++LR Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355 >UniRef50_C0ZF72 RNA polymerase sigma factor n=5 Tax=Bacillales RepID=C0ZF72_BREBN Length = 262 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 148/239 (61%), Gaps = 4/239 (1%) Query: 4 LYTAEGVMDKH-SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 ++ EG + L R++PLV A RL + LPA+V+ DDL+ G GLL+A+ ++D Sbjct: 18 MWKQEGSREAEVDLITRFLPLVDKVANRLAINLPANVDKDDLISYGRFGLLDALAKFDHT 77 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +G F TYA+ RIRGAM+D LR DW+PR+VR A+++ +A LEQ++ R T+ EV++ Sbjct: 78 RGLQFETYAMWRIRGAMIDGLRENDWIPRTVRDKAKKIEEAYTTLEQQMLRMPTDQEVSD 137 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD---SIELVTDDHQRENPLQQLLDSNLR 179 LGI + +Q+ L+T+ + + S DE + + + D P S+L+ Sbjct: 138 YLGISKKELQQVFLETSLASMVSIDEAVGDEDEQKTARHSYIIDELTPRPDNVAEVSSLK 197 Query: 180 QRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + ++ I+ LPE+E+LV++L+Y EE+ L EI ++ + SR+SQLHS+A+ RLR+ L + Sbjct: 198 EVLVTVIDKLPEKERLVISLFYFEEMTLSEIAEIMSLSPSRISQLHSKALFRLRSALSR 256 >UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacteria RepID=RPOD_LISMO Length = 374 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A + K L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 132 AGDIEAKGRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNMGLMKAVEKFDFNKGFK 188 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L Q+LGR+ + E+ E Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 248 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + R++L + S + E DS + +D +P L++++ Sbjct: 249 MDLPTEKVREILKIAQ--EPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQL 306 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL +RE+ VL L + + L+E+G V V R+ Q+ ++A+++LR Sbjct: 307 EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLR 361 >UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacteria RepID=RPOD_LACLA Length = 386 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 13/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + + LV A R R ++ DL+Q G +GL+ AV+++D +G F+TYA Sbjct: 150 AKQMLAEANLRLVVSIAKRYSGR---GMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYA 206 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + ++ + L QELGR+ + E+ + L + Sbjct: 207 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKELHMAP 266 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 R++L + S + E DS + +D E+P+ LR+++ E ++ Sbjct: 267 DKVREVLKIAQ--EPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMD 324 Query: 188 TLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL +RE+ VL + + + L+++G +V R+ Q+ ++AIK+LR Sbjct: 325 TLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLR 374 >UniRef50_Q1NP84 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NP84_9DELT Length = 256 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 101/231 (43%), Positives = 140/231 (60%), Gaps = 7/231 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y PL+++ A RL RLP V +DDL+ G +GL++A+ ++D + F TYA Sbjct: 24 RDELILTYTPLIKYIASRLASRLPPQVAVDDLISCGIVGLIDAINKFDPAKNVQFKTYAE 83 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RI+GAMLDELR+ DWVPRSVRR E+ + G+LE +LGR + E A LGI++AD+ Sbjct: 84 FRIKGAMLDELRALDWVPRSVRRKITELEKISGELESKLGRPPDDEETAAALGIELADFH 143 Query: 133 QMLLDTNNSQLFSYD-----EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 ++L +T + D E GD E+ D + +P L R + +AI Sbjct: 144 RLLDETKSVTFLDIDYLRSKVPDEIEGDVGEIFARDDK--DPFTALNLGETRNLLAKAIG 201 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 LPE+EKL + LYY EEL +KEIG VL ESR+SQ+HS+A+ RLR KL K Sbjct: 202 ELPEKEKLTVALYYHEELTMKEIGEVLGYTESRISQMHSKAMLRLRAKLKK 252 >UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM33_ACIFE Length = 589 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 14/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K L + + LV A R R + DL+Q G +GL+ AVE++D +G F+ Sbjct: 348 GDNAKKCLSEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIKAVEKFDYNKGFKFS 404 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + ++ + QL QELGR T E+A+ + Sbjct: 405 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEEIAKEMD 464 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVME 184 + + R++ + S + E DS + +D + +P + L++++ + Sbjct: 465 VSVERVREIQKIAQ--EPVSLETPIGEEEDSHLGDFIEDQEAPSPADAASYTLLQEQLGK 522 Query: 185 AI-ETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + E L RE+ VL L + L+E+G V R+ Q+ ++A+++LR+ Sbjct: 523 VLQEHLSARERRVLELRFGLMDGRTRTLEEVGQYFGVTRERIRQIEAKALRKLRS 577 >UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=Q47RL2_THEFY Length = 388 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 108/234 (46%), Gaps = 12/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 EG + K L + + LV A R R + L DL+Q G +GL+ AVE++D +G F Sbjct: 148 EGKLAKRRLIESNLRLVVSVAKRYLGR---GLALLDLIQEGNLGLIRAVEKFDYTRGYKF 204 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + VP + + +A+ +L QELGR T E++ L Sbjct: 205 STYATWWIRQAITRAIADQARTIRVPVHMVESINRLARTRRRLHQELGREPTLHELSREL 264 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 +D ++ + + S E + +D P++ L+ ++ + Sbjct: 265 NVDHDRVVEI--HRVSQEPISLHTPIGEEDSAFGDFIEDTDAVPPVEAAAFVMLQDQLAQ 322 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + L ERE+ V+TL + + L+E+G V R+ Q+ S+ + +LR Sbjct: 323 VLGGLSEREQRVITLRFGLEDGKPHTLEEVGRKFGVTRERIRQIESKTLAKLRQ 376 >UniRef50_A8MHG6 RNA polymerase sigma factor n=2 Tax=Alkaliphilus RepID=A8MHG6_ALKOO Length = 245 Score = 250 bits (639), Expect = 3e-65, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 142/231 (61%), Gaps = 4/231 (1%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 K L + Y+ LV+ A RL + +++E DDL+ G GL++A+E++D + Sbjct: 13 NNNDSQAKALLIEEYIRLVKFIAGRLYISYGSNIEYDDLVSYGIFGLIDAIEKFDLNKQV 72 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA RIRGA++D LRS DWVPRS+R+ ++++ +A LE +LGR+AT+ EV+E L Sbjct: 73 KFETYAQIRIRGAIIDSLRSLDWVPRSIRQKSKKIEEAYSSLENKLGRSATDVEVSEALD 132 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 I + + +++LL+T + + S +E E G L+ + + + + + + Sbjct: 133 ISVKELQEILLNTASFNVISLEEVIFEVG----LIGNTAEEQLTEDLICRRETYNNLKDT 188 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 I LPERE+ V++LYY L KEIG VL++ ESRVSQLHS+AI RL++KL Sbjct: 189 IVQLPERERQVISLYYYNNLTYKEIGKVLDISESRVSQLHSKAISRLKSKL 239 >UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellular organisms RepID=RPOD_XYLFT Length = 618 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 108/234 (46%), Gaps = 11/234 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+ K + + + LV A + R ++ DL+Q G IGL+ AV +++ +G Sbjct: 374 AKASKAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVCKFEHRRGFK 430 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ Q+ GR AT E+A+ Sbjct: 431 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKE 490 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + R+++ +E + +D E+P+ + NL + V Sbjct: 491 MDMPEDKIRKVMKIAKEPISMETPIGDDEDSH-LGDFIEDPNVESPVDTTTNVNLSETVR 549 Query: 184 EAIETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E + L RE VL + + ++ L+E+G +V R+ Q+ ++A+++LR Sbjct: 550 EVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 603 >UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria RepID=A5IMD4_THEP1 Length = 407 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 K L + LV A R R + DL+Q G IGLL AVE++D +G F Sbjct: 159 GDKKAKEKLITSNLRLVVSIAKRYMGR---GLSFQDLIQEGNIGLLKAVEKFDWRKGYKF 215 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + + Q+ G + E+A+ + Sbjct: 216 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMM 275 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVM 183 G +++L + S + E D SIE D +P ++ + +R+ + Sbjct: 276 GKPPEKIKEILEAAK--ETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELE 333 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL RE +VL + Y + L+E+G V R+ Q+ +A+++LR Sbjct: 334 KVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 387 >UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actinobacteria (class) RepID=RPOD_MYCBO Length = 528 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G K+ L + + LV A R R + DL+Q G +GL+ AVE++D +G F Sbjct: 287 DGDRAKNHLLEANLRLVVSLAKRYTGR---GMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + +L Q+LGR T E+A+ + Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 I ++ + S D+ + GDS + +D + + + + L+ ++ Sbjct: 404 DITPEKVLEIQQYAR--EPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQ 461 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL ERE V+ L + + L EIG V V R+ Q+ S+ + +LR Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 515 >UniRef50_C9YEL0 RNA polymerase sigma factor n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YEL0_9BURK Length = 273 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 110/235 (46%), Positives = 162/235 (68%), Gaps = 2/235 (0%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 +YTA+G +D+ +L ++Y PLVR A + +LP SVE+DDL+Q G IGL +A+ RY+A Q Sbjct: 36 MYTAKGQLDRSALIKQYQPLVRRLAHHMMAKLPPSVEVDDLIQVGLIGLSDALSRYEASQ 95 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F T+A QRIRGAMLDELR DW+ R R++ +E+ A+ +LE +LGR+ E+E+A Sbjct: 96 GVQFETFATQRIRGAMLDELRENDWMSRGSRKSQKEIETALRKLEHKLGRSPAESEIATE 155 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEW--REEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 LG+ ++DY+ +L +QL ++ R E D+ Q +PL L D LRQ Sbjct: 156 LGMSLSDYQSLLGKVRGTQLVYLEDMARRNEDDDTYLDRHVADQDADPLNMLRDQRLRQS 215 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +++AI+ LPERE+ ++++YY++++NLKEI AVL+V ESRV QLHSQ+I RLR K+ Sbjct: 216 LVDAIKCLPEREQYIMSMYYEQDMNLKEIAAVLDVTESRVCQLHSQSIARLRAKM 270 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 13/240 (5%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 +++ E K + + + LV A + R + DL+Q G +GL+ AVE+++ Sbjct: 322 TNVHIREAHQAKTEMVEANLRLVISIAKKYTNR---GLSFLDLIQEGNMGLMKAVEKFEY 378 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ + + +P + +V Q QL QE G T Sbjct: 379 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPE 438 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSN 177 EVA+ + + + +Q++ Q S + D S +D ENP S Sbjct: 439 EVADEMNLPVERVQQIMKMAQ--QPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSL 496 Query: 178 LRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 LR+++++ +++L ERE+ VL+L + L+E+G +V R+ Q+ ++A++++R Sbjct: 497 LREKIIDVLDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMR 556 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 107/233 (45%), Gaps = 11/233 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 E K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G F Sbjct: 410 EARQAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 466 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+L Sbjct: 467 STYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKL 526 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + + R++L EE + +D P+ + SNLR+ Sbjct: 527 AMPLEKVRKVLKIAKEPISLETPIGDEEDSH-LGDFIEDKNAILPIDAAIQSNLRETTTR 585 Query: 185 AIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 586 VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 638 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 11/234 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E K L + + LV A + R ++ DL+Q G IGL+ AVE+++ +G Sbjct: 384 NETEKAKSKLIEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVEKFEYKRGYK 440 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL+Q++GR T E++ + Sbjct: 441 FSTYATWWIRQAITRAIADQARTIRIPVHMIETINKMMKITRQLQQDMGREPTPEEISSK 500 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + I + ++++ +E S+ +D +NP +++ L++ Sbjct: 501 MDIPVEKIKKVMKIAKEPVSLETPIGEDEDS-SLGDFIEDKSAKNPSEEVTYLKLKEHTK 559 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +ETL RE VL L + E L+E+G V R+ Q+ ++A+++LR Sbjct: 560 QILETLSHREASVLKLRFGIECDSDHTLEEVGKQFNVTRERIRQIEAKALRKLR 613 >UniRef50_D0FQ53 RNA polymerase sigma factor n=2 Tax=Erwinia pyrifoliae RepID=D0FQ53_ERWPY Length = 243 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 120/239 (50%), Positives = 171/239 (71%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 M+ +YT G+ DK LW +Y +VR EALRLQ RLPASVELDDL+QAG +G L+A++ +D Sbjct: 1 MSGIYTPGGIEDKTILWGKYNHIVRQEALRLQKRLPASVELDDLIQAGSLGFLSAIDHFD 60 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 +G + + QRIR A++DELR RDWVPR VR++AREV I QLEQ G A+E ++ Sbjct: 61 PTKGVTLSAFLAQRIRWALMDELRERDWVPRRVRKHAREVTAVIQQLEQNKGGEASEADI 120 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 A +G+ + + +QML DTN+SQ++S DE +E+ DS E + + ++ NP+ Q + NL Sbjct: 121 ATEMGVSVGELQQMLADTNSSQIYSLDELQEQFADSYETIDEGNEALNPVHQAVQENLVG 180 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 ++ E I +PERE+ +L LYYQ++LN++EIGAVL + E+RVSQLHS AIKR+R ++ L Sbjct: 181 KIAEHISVIPEREQRILQLYYQQDLNMREIGAVLSLTETRVSQLHSLAIKRIRARMDAL 239 >UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermotogaceae RepID=RPOD_THEMA Length = 399 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 K L + LV A R R + DL+Q G IGLL AVE++D +G F Sbjct: 151 GDKKAKEKLITSNLRLVVSIAKRYMGR---GLSFQDLIQEGNIGLLKAVEKFDWRKGYKF 207 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + + Q+ G + E+A+ + Sbjct: 208 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMM 267 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVM 183 G +++L + S + E D SIE D +P ++ + +R+ + Sbjct: 268 GKPPEKIKEILEAAK--ETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELE 325 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL RE +VL + Y + L+E+G V R+ Q+ +A+++LR Sbjct: 326 KVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 379 >UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=B8FTY1_DESHD Length = 372 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 K L + + LV A R R + DL+Q G +GL+ AVE++D ++G F Sbjct: 131 GDESAKRRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIKAVEKFDYVKGFKF 187 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + QL QELGR T E+A ++ Sbjct: 188 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQM 247 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 I + R+++ + S + E DS + D P + L++++ Sbjct: 248 DISVERVREIMKIAQ--EPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLE 305 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E +ETL RE+ VL L + + L+E+G V R+ Q+ ++A+++LR Sbjct: 306 EVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLR 359 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 E + K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G F Sbjct: 441 EARVAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 497 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+L Sbjct: 498 STYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAEKL 557 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 G+ + R++L + S + + DS + +D P+ + SNLR+ Sbjct: 558 GLPLEKIRKVLKIAK--EPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETTT 615 Query: 184 EAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 616 RVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 669 >UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi (class) RepID=A5UQ16_ROSS1 Length = 541 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 12/239 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + L Q + LV A + R ++L DL+Q G +GL+ AVE++D +G F Sbjct: 300 QGKTAREDLTQANLRLVVSVAKKYIGR---GLQLLDLIQEGNVGLIRAVEKFDYRKGFKF 356 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + + + ++ QELGR T+ E++ L Sbjct: 357 STYATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRAL 416 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 GI + R + + +EE + +D + P LR++V + Sbjct: 417 GIPVDKVRSIRKTSLEPVSLETPVGQEEDSQ-LGDFIEDSKVLAPSDAASHQMLREQVEQ 475 Query: 185 AIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT-KLGK 238 + L ERE+ VL L + E L+E+G V R+ Q+ +A+++LR +LGK Sbjct: 476 VLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGK 534 >UniRef50_B7ATU0 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B7ATU0_9BACE Length = 254 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 144/238 (60%), Gaps = 2/238 (0%) Query: 3 SLYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 S Y+ + L Y LV+ A RL + L SVE DDL G GL++A++++D Sbjct: 11 SEYSRTRSTALRDQLIIEYSQLVKLVAGRLGMYLGYSVEYDDLCGYGIFGLIDAIDKFDC 70 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 + F TYA RIRGA+LD++R DW+PRS+R+ +++ A+ ++E + G AT+ E+A Sbjct: 71 NKNVKFETYASLRIRGAILDQIRKMDWIPRSLRQKQKKIDAAMSKIEAQKGSVATDEELA 130 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG-DSIELVTDDHQRENPLQQLLDSNLRQ 180 + LGI + ++ T + L S DE+ E G ++ + + + P + L++ Sbjct: 131 QELGITLDEFNDWQGKTKATNLISLDEYTETQGTEAKMDSVTNARFDQPEDVVEKEELKK 190 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++EAI L ++E+ V+TLYY EE+ LKEI VL+V ESRVSQLH++A+ ++++KLG Sbjct: 191 MIVEAISLLTDKERSVVTLYYYEEMTLKEISLVLDVSESRVSQLHTKALLKMKSKLGP 248 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 11/234 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+ K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 404 AKARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 460 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL QE+GR T E+ ER Sbjct: 461 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGER 520 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L +D A R++L +E + +D +P+ + LR+ Sbjct: 521 LEMDEAKVRKVLKIAKEPISMETPIGDDEDSH-LGDFIEDGTISSPVDDATAAGLREATR 579 Query: 184 EAIETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + L ERE VL + + ++ L+E+G +V R+ Q+ ++A+++LR Sbjct: 580 DVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 633 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 114/241 (47%), Gaps = 13/241 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 E K + + + LV A + R + DL+Q G +GL+ AVE+++ +G F Sbjct: 443 EARRAKDEMVEANLRLVISIAKKYTNR---GLSFLDLIQEGNMGLMKAVEKFEYRRGYKF 499 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + QL QE GR T E+AE + Sbjct: 500 STYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEEI 559 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + + R +L + + + +D ENP+++ S L++++ + Sbjct: 560 HLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFI-EDKAAENPMEEASFSFLKEKIKD 618 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR--TKLGK 238 ++TL +RE+ V+ + L+E+G V R+ Q+ ++A+++LR T++ K Sbjct: 619 VLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPTRISK 678 Query: 239 L 239 + Sbjct: 679 I 679 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 11/230 (4%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+TY Sbjct: 444 QAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTY 500 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A IR A+ + + +P + ++ + Q+ QE+GR T E+AER+ + Sbjct: 501 ATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMVQEMGREPTPEEIAERMSMS 560 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 + R++L EE + +D +P + + SNLR ++ Sbjct: 561 LEKVRKVLKIAKEPISLETPVGDEEDSH-LGDFIEDKSMLSPSEHAIMSNLRDTTGRVLQ 619 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE+ VL + + + L+E+G V R+ Q+ ++A+++LR Sbjct: 620 TLTSREEHVLRMRFGIGLPTDHTLEEVGKQFNVTRERIRQIEAKALRKLR 669 >UniRef50_A5G8Y3 RNA polymerase sigma factor n=9 Tax=Desulfuromonadales RepID=A5G8Y3_GEOUR Length = 251 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 99/231 (42%), Positives = 147/231 (63%), Gaps = 3/231 (1%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + D+ L ++PLV+ R+ LP ++ DDL A IGL++A ER+D +G F T Sbjct: 17 IPDRDELVVSHLPLVKFLVDRIASALPPHLDRDDLRSAAVIGLISAAERFDPSRGVMFKT 76 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 +A QRIRG ++DELRS+DW+ RS+R + + + LEQ LGRN T EVA +G+++ Sbjct: 77 FAEQRIRGTIMDELRSQDWLTRSLRDKFKRLEREFSCLEQRLGRNPTSEEVAAAMGLELE 136 Query: 130 DYRQMLLDTNNSQLFSYDE-WREEHGDSIELVT--DDHQRENPLQQLLDSNLRQRVMEAI 186 Y +L + + S D+ W +E G + L+ +D E+P QL+ + + EAI Sbjct: 137 GYFHLLEEIHFLSFVSLDDAWMDEDGSPLGLLDVLEDKGVESPQNQLIARQTVENLAEAI 196 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + LPE+E++V+TLYY EELNLKEIG+VL + ESR+SQLHSQA+ RLR ++ Sbjct: 197 DGLPEKERIVITLYYYEELNLKEIGSVLSLTESRISQLHSQALLRLRGRMK 247 >UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi RepID=D1C1P9_SPHTD Length = 538 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 109/233 (46%), Gaps = 11/233 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 G + + L + + LV A + R + + DL+Q G +GL+ AVE++ +G F Sbjct: 297 RGDIARKKLTEANLRLVVSVAKKYGGR---GMSMLDLVQEGNLGLIRAVEKFQHHKGFKF 353 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + + + +L+QELGR T E+A + Sbjct: 354 STYATWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEM 413 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 G+ R++L + EE + + +D + P L+++V + Sbjct: 414 GLPPDKVREILKISQEPVSLEMPIGEEEDSN-LGDFIEDSKALAPSDAASLKLLKEQVDD 472 Query: 185 AIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L +RE+ VL L + + L+E+G V R+ Q+ ++A+++LR Sbjct: 473 VLGSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKLR 525 >UniRef50_Q1Q6T7 Strongly similar to RNA polymerase sigma factor for flagellar operon n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6T7_9BACT Length = 259 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 148/239 (61%), Gaps = 4/239 (1%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y + ++D+ L + LV++ + + LP+ V+ +DL++ G IGLL A ER+D Sbjct: 18 YKNKNLIDREKLVTENLSLVKYVVNKFIIYLPSFVDKEDLIEYGVIGLLEASERFDPCMD 77 Query: 65 TAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 T F T+AV RIRGA+LD LR++DW+PRSVR +A LEQ+L R+ E+A L Sbjct: 78 TKFGTFAVSRIRGAILDHLRAQDWLPRSVREKVSLAREAYATLEQKLNRHPLPEEIAAEL 137 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEW--REEHG--DSIELVTDDHQRENPLQQLLDSNLRQ 180 ID A++ ++L++ N S +E + E G +++ ++ D + +PL + ++ Sbjct: 138 KIDTAEWEKLLVEINFGMFLSLEEMNAKSEDGNKEAVGMLFADSKIGDPLSNIETEEEKE 197 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 ++ AI+ LP REKLV+TLYY E+L L+EI +L++ ESRVSQ+H Q + LR+K+ K+ Sbjct: 198 LLVAAIKELPAREKLVITLYYYEDLMLREISQMLDISESRVSQIHHQGLFMLRSKVRKI 256 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 114/230 (49%), Gaps = 13/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K+ L Q + LV A + R ++L DL+Q G IGL+ AVE+++ +G F+TYA Sbjct: 316 AKNRLVQSNLRLVVSVAKKYAGR---GLQLLDLVQEGNIGLMKAVEKFEYRRGYKFSTYA 372 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + + + + +++ GR T E+AE LG+DI Sbjct: 373 TWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEYQRQHGREPTPEEMAEHLGVDI 432 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 A + +L + S D DS + +D +P + + +L+ + ++ Sbjct: 433 AKVKSILKIAK--EPLSLDTPVGSGEDSFLSDFIEDADSTSPDEATIYDSLQDNLARVLK 490 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE++VL L + +L L+E+G V R+ Q+ ++A+K+L+ Sbjct: 491 TLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEAKALKKLK 540 >UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 14/235 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G+ + L + LV A + R + DL+Q G +GL+ AVE++D +G F Sbjct: 215 DGLEARRILISANLRLVVSIAKKYVGR---GMLFLDLIQEGNMGLVKAVEKFDYTKGFKF 271 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + L Q LGR T E+A + Sbjct: 272 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGREPTAEEIAAEM 331 Query: 125 -GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 I R++ + S + E DS + +D +P + + L++ + Sbjct: 332 ENITPEKVREIQKIALDP--VSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQLLKEEI 389 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +E L ERE+ VL L + E L+E+G V R+ Q+ ++A+++L+ Sbjct: 390 KMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLK 444 >UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacteria (class) RepID=B9CNX8_9ACTN Length = 455 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 11/232 (4%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G+ K L + LV A R R + DL+Q G +GL+ AVE++D +G F+ Sbjct: 214 GLDAKQQLISANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIRAVEKFDYTKGFKFS 270 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + ++ + QL Q+LGR+ T E+ +G Sbjct: 271 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMG 330 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + R++ + EE + +D P DS LR+++ + Sbjct: 331 MSPDRVREIQKISQEPVSLETPIGEEEDSQ-LGDFIEDSTAIAPPDAASDSMLREQLEQV 389 Query: 186 IETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++ L +RE+ V+ + L+E+G V R+ Q+ S+ + +LR Sbjct: 390 LDGLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLR 441 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 112/230 (48%), Gaps = 13/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+TYA Sbjct: 459 AKSELVEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYA 515 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + ++ + L QELGR T E+AER+ + + Sbjct: 516 TWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGREPTPEEIAERMELPL 575 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 R++L + S + E DS + +D +P ++ NL ++ + + Sbjct: 576 DKVRKVLKIAK--EPISLETPIGEEEDSHLGDFIEDKSVTSPSDAVISVNLAEQTRKVLA 633 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE+ VL + + + L+E+G EV R+ Q+ ++A+++LR Sbjct: 634 TLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 683 >UniRef50_P10726 RNA polymerase sigma-D factor n=24 Tax=Bacillales RepID=RPSD_BACSU Length = 254 Score = 246 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 143/234 (61%), Gaps = 2/234 (0%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + L +RY+PLV + R+ V LP SV DDL+ G +GL +A+E++D + F Sbjct: 19 KDPKAGDDLMRRYMPLVTYHVGRISVGLPKSVHKDDLMSLGMLGLYDALEKFDPSRDLKF 78 Query: 68 TTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 TYA RIRGA++D LR DW+PR+ R ++V AI +LEQ RN + E+AE LG+ Sbjct: 79 DTYASFRIRGAIIDGLRKEDWLPRTSREKTKKVEAAIEKLEQRYLRNVSPAEIAEELGMT 138 Query: 128 IADYRQMLLDTNNSQLFSYDEW--REEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + D + + + L S DE ++ G++I+++ D + P ++++ L ++ E Sbjct: 139 VQDVVSTMNEGFFANLLSIDEKLHDQDDGENIQVMIRDDKNVPPEEKIMKDELIAQLAEK 198 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 I L E+E+LV++L+Y+EEL L EIG VL + SR+SQ+HS+A+ +L+ L K+ Sbjct: 199 IHELSEKEQLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLKNLLEKV 252 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 246 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 12/232 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + Q + LV A + R + DL+Q G +GL+ A E++D +G F+ Sbjct: 212 GRRAKEKMVQSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 268 Query: 69 TYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + L QE GR TE E+AE + Sbjct: 269 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 328 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + I R + +EE + + D ENP Q + + LR+ + Sbjct: 329 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGV 386 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL RE+ VL L Y + L+EIG + +V R+ Q+ ++A+++LR Sbjct: 387 LATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 107/233 (45%), Gaps = 11/233 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 E K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G F Sbjct: 476 EARQAKKEMIEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 532 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+L Sbjct: 533 STYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKL 592 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + + R++L EE + +D P+ + SNLR+ Sbjct: 593 AMPLEKVRKVLKIAKEPISLETPIGDEEDSH-LGDFIEDKNVVLPIDAAIQSNLRETTTR 651 Query: 185 AIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 652 VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 704 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 245 bits (626), Expect = 9e-64, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 12/240 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+G + L Q + LV A + + + DL+Q G IGL+ AVE++D +G Sbjct: 160 AQGNEARQHLIQANLRLVVSIAKKYTSY---GLTMMDLVQEGNIGLMRAVEKFDYTKGHK 216 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + +V + +L+Q + R T E+A+ Sbjct: 217 FSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADA 276 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 +GI R+ L + + +E G + + DD + P + S LR+++ Sbjct: 277 MGISSTKVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDD-RISTPAEAAAASMLREQLE 335 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT-KLGK 238 E ++ LPERE+ ++ L Y + L+E+G + R+ Q+ + A+++LR LGK Sbjct: 336 EVLQKLPERERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGK 395 >UniRef50_P29248 RNA polymerase sigma factor for flagellar operon n=153 Tax=Gammaproteobacteria RepID=FLIA_PSEAE Length = 247 Score = 245 bits (626), Expect = 9e-64, Method: Composition-based stats. Identities = 118/232 (50%), Positives = 149/232 (64%), Gaps = 1/232 (0%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 A+ + L QRY PLV+ A L RLPASV+++DL+QAG IGLL A ++YDA +G Sbjct: 12 KAQAQNSQEQLIQRYAPLVKRIAYHLLGRLPASVQVEDLMQAGMIGLLEAAKKYDAGKGA 71 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 +F TYA RIRGAMLDE+R DW PRSV RN R V AI +E GR+A + EVA L Sbjct: 72 SFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVTDAIRAIEARTGRDAKDHEVAAELQ 131 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + + DY +L DT S+L+S+D+ ++ + T E P+ LLD + + +A Sbjct: 132 LSLEDYYGILSDTQGSRLYSFDDLLQDGEHGLPEDTSLSHNE-PIHGLLDERFQAALADA 190 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 I LPERE+LVL LYY EELNLKEIG VL V ESRVSQLHSQ RLR +L Sbjct: 191 IAKLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRARLA 242 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 13/238 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 EG K L + LV A + R + L DL+Q G IGL+ A +++D +G Sbjct: 219 RKEGEGAKCKLIEANTRLVVSIAKKYLGR---GLSLLDLIQEGNIGLMRAADKFDYTRGY 275 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P V ++ + +L+QELG T +++ Sbjct: 276 KFSTYATWWIRQAVTRAIADQSRTIRLPVHVCETVSKIHKTSQKLQQELGHEPTIEQLSS 335 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQR 181 LG+ + Q+ + S + E GDS + +D NP+Q+ + LR++ Sbjct: 336 ELGMPMKKVVQIQQASKFP--VSLEAPIGEDGDSMLGDFLEDVHVLNPVQKAANDILREQ 393 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + ++ LP +E+ VL L + + L+E+G + RV Q+ A++RLR Sbjct: 394 INSVLQNLPPKERKVLELRFGLVDGKCRTLEEVGNEFAITRERVRQIECTALRRLREN 451 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K+ L Q + LV A + R ++L DL+Q G IGL+ AVE+++ +G F+T Sbjct: 300 QEAKNRLVQANLRLVVSVAKKYAGR---GLQLLDLIQEGNIGLMKAVEKFEYRRGYKFST 356 Query: 70 YAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + + + + +++ GR T E+A+ LG+ Sbjct: 357 YATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGV 416 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 ++A + +L + S D DS + +D + +P + + NL+ + Sbjct: 417 EVAKVKSVLKIAK--EPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYENLQSNLRRV 474 Query: 186 IETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE++VL L + +L L+E+G V R+ Q+ ++A+K+L+ Sbjct: 475 LKTLSPREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLK 526 >UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria RepID=B0TG57_HELMI Length = 371 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 129 EGDEAAKRRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIKAVEKFDYRKGYK 185 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL QE GR E+A+ Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPMPEEIAKE 245 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I + R+++ + S + E DS + +D P + L++++ Sbjct: 246 MDIPVERVREIMKIAQ--EPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKEQL 303 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E +ETL RE VL L + + L+E+G V R+ Q+ ++A+++LR Sbjct: 304 EEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLR 358 >UniRef50_A1HN10 RNA polymerase sigma factor n=4 Tax=Veillonellaceae RepID=A1HN10_9FIRM Length = 252 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 145/236 (61%), Gaps = 8/236 (3%) Query: 5 YTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y A + + L ++Y+PLV+ A R+ + LP ++ +DL+ G GLL+A+ER+D + Sbjct: 19 YQASKKPELREKLIEKYLPLVKMVAGRVAIGLPQHIDKEDLISYGFFGLLDAIERFDPSR 78 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F TYAV RIRG++ D +R +DW+P S+R+ R + + + +LE LGR+AT+ E+A+ Sbjct: 79 NIKFETYAVARIRGSIFDAIRVQDWLPASLRQKGRLLERTVAELENSLGRSATDAEIAQA 138 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + Q++ N S L +E+ + T + N Q++ +++ + Sbjct: 139 MNFTVEQLHQLINQLNASTLIPLEEFVQNE-------TVNQASPNLAQEIEQEEVKKTLA 191 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +AI+ LPE+E+LV++LYY E L LKEI +L++ E+R+SQLH++AI RLR L +L Sbjct: 192 KAIDRLPEKERLVISLYYYEGLTLKEISLILKLSEARISQLHTKAIFRLRGALSRL 247 >UniRef50_B8FK28 RNA polymerase sigma factor n=2 Tax=Proteobacteria RepID=B8FK28_DESAA Length = 252 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 146/229 (63%), Gaps = 4/229 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L +Y L + A RL +RLP SV +DDL+ AG +GLL+A+++YD +G F TYA Sbjct: 18 RDELITKYAYLAKLCAHRLAMRLPPSVNVDDLISAGIMGLLDALDKYDEGRGVKFRTYAE 77 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGAMLDELR+ DWVPRSVR+ +E+ QA+ ++E+ R A E+A LG+D+ Y+ Sbjct: 78 FRIRGAMLDELRAMDWVPRSVRKKVQEIEQAVNRVEKRESRPADAEEIANELGVDMDTYQ 137 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIE----LVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 ML +L S DE + ++ + V NP + L+DS ++ + ++I + Sbjct: 138 NMLSKAGGIELVSLDEPLWSNDNTKDGRRTHVDLLEDNANPDRDLMDSEFKKILAQSISS 197 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 L +E+ +L+LYYQ+EL LKE+G V+ + ESR+ Q+H+Q + +LR+KL Sbjct: 198 LTPKEQQILSLYYQDELTLKEVGEVMGLTESRICQIHTQCMIKLRSKLK 246 >UniRef50_A0LI23 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LI23_SYNFM Length = 279 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 99/233 (42%), Positives = 145/233 (62%), Gaps = 5/233 (2%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 G K + ++ LV+H ALRL RLP V +DDL+ AG IGL++AV++YD+ QG F Sbjct: 27 AGGETKELVILKHSDLVKHMALRLFSRLPDHVSIDDLISAGVIGLIDAVDKYDSGQGIPF 86 Query: 68 TTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 YA RIRGAMLDE+R+ DWVPRS+R+ + + LEQ+LGR ++ +VA L I Sbjct: 87 KFYAKIRIRGAMLDEIRAMDWVPRSLRQKGNVLERTFSALEQKLGRCPSDEQVAGELNIG 146 Query: 128 IADYRQMLLDTNNSQLFS--YDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 I DY ++L + +E E+G+S L +D E Q +++ + +A Sbjct: 147 IEDYHRLLDEIKGISFLPENINEALLENGESGSLASD---SEELFQHAYRQEIQRHLADA 203 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 I TL E+E+LVL+LYY +EL +KE+G L ESR+SQ+H++AI +LR++L K Sbjct: 204 IRTLTEKEQLVLSLYYYDELTMKEVGTALGYTESRISQIHTKAIIKLRSRLAK 256 >UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteobacteria RepID=A8ZUC3_DESOH Length = 738 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 13/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + + LV A + R ++ DL+Q G +GL+ AV++++ +G F+TYA Sbjct: 500 SKSELIRANLRLVVSIAKKYTNR---GLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYA 556 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + ++ + L QE G + E+AE++ I + Sbjct: 557 TWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPSPEEIAEKMEIPL 616 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 R++L + S + E DS + +D + P + + NL ++ + + Sbjct: 617 EKVRRVLKIAR--EPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMNLSEQTRKVLA 674 Query: 188 TLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE+ VL + + + L+E+G V R+ Q+ ++A+++LR Sbjct: 675 TLTPREEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLR 724 >UniRef50_Q5ZUL1 RNA polymerase sigma factor n=6 Tax=Legionella pneumophila RepID=Q5ZUL1_LEGPH Length = 262 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 101/234 (43%), Positives = 154/234 (65%), Gaps = 2/234 (0%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 + Y+ + +L + + LV+ A L RLP SV+LDDL+Q+G +GLL A YD+ Sbjct: 29 AAYSKVNQQTQEALVKTHATLVKRIAHHLLGRLPQSVQLDDLIQSGMLGLLEAARHYDSS 88 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +G +F TYA RIRG MLDE+R DWVPRSV RN+R ++ A+ LE +LGR A + E+AE Sbjct: 89 KGASFETYAGIRIRGHMLDEVRRNDWVPRSVYRNSRMISDAVRILEHKLGREAKDNEIAE 148 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 LG+ + DY ML D+ +S L+ +D+ + + + P + ++ S++ R+ Sbjct: 149 ELGVSLDDYHDMLQDSISSHLYGFDDLGVTDDVLFDH--EGNGSTEPHRNVMRSDMMNRL 206 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + I++LP +E+LVL+LYY+++LNLKEIG +LEV ESR+SQ+ SQA R+R++L Sbjct: 207 TQVIDSLPRKERLVLSLYYEQDLNLKEIGEILEVSESRISQILSQATHRIRSRL 260 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 11/230 (4%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 K + + + LV A + R + DL+Q G IGL+ AVE+++ +G F+TY Sbjct: 410 QAKREMIEANLRLVISIAKKYTNR---GLGFLDLIQEGNIGLMKAVEKFEWRRGYKFSTY 466 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A IR A+ + + +P + ++ + Q+ QE+GR T E+AE L + Sbjct: 467 ATWWIRQAITRSIADQARTIRIPVHMIETINKMMRVSRQIAQEIGREPTPEELAEHLELP 526 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 + Q+L +E + V DD ENPL + + L + +E +E Sbjct: 527 VEKVLQILEVAKEPVSLETPIGDDEDSQLGDFVEDD-NAENPLDSTIGAALAEATLEVLE 585 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L +RE+ VL + + + L+E+G V R+ Q+ ++A+++LR Sbjct: 586 NLTDREQKVLRMRFGIGMNTDHTLEEVGKQFGVTRERIRQIEAKALRKLR 635 >UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Proteobacteria RepID=RPOD_AGRT5 Length = 684 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 11/233 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 E + K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G F Sbjct: 442 EARIAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKF 498 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+L Sbjct: 499 STYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKL 558 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + + R++L EE + +D P+ + +NLR+ Sbjct: 559 AMPLEKVRKVLKIAKEPISLETPVGDEEDSH-LGDFIEDKNALLPIDAAIQANLRETTTR 617 Query: 185 AIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 618 VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670 >UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria RepID=C4LJ07_CORK4 Length = 621 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 13/236 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 +G K+ L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 378 AHDGRKAKNHLLEANLRLVVSLAKRYTGR---GMAFLDLIQEGNLGLIRAVEKFDYTKGY 434 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P + ++ + +L Q+L R T E+A Sbjct: 435 KFSTYATWWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQRELLQDLSREPTPEELAR 494 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQR 181 + I ++ + S D+ + GDS + +D + + + + L+ + Sbjct: 495 EMDITEDKVLEIQQYAR--EPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQ 552 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + ++TL ERE V+ L + L EIG V V R+ Q+ S+ + +LR Sbjct: 553 LQDVLKTLTEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLR 608 >UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphaproteobacteria RepID=RPOD_RHOCA Length = 674 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 106/234 (45%), Gaps = 11/234 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 431 KEARQAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 487 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+ Sbjct: 488 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEK 547 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L + + R+++ EE + +D PL + NL++ Sbjct: 548 LQMPLEKVRKVMKIAKEPISLETPIGDEEDSQ-LGDFIEDKNAILPLDSAIQENLKETTT 606 Query: 184 EAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 607 RVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 660 >UniRef50_C8QWD0 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWD0_9DELT Length = 262 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 97/231 (41%), Positives = 139/231 (60%), Gaps = 7/231 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y PL+++ A RL RLP V +DDL+ G +GL++A+ ++D + F TYA Sbjct: 30 REELILNYTPLIKYIASRLASRLPPQVAVDDLISCGIVGLIDAINKFDPAKNVQFKTYAE 89 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RI+GAMLDELR+ DWVPRS+RR E+ Q +LE +LGR AT+ E A LGI + +Y Sbjct: 90 FRIKGAMLDELRALDWVPRSIRRKVTELEQVCSELEVKLGRPATDEETATALGIGLEEYH 149 Query: 133 QMLLDTNNSQLFSYD-----EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 ++L +T + + E G+ E+ D + +P L + + +AI Sbjct: 150 RLLDETKSVSFLDIEYLRRQAPAEVEGNLAEVFASDDK--DPFAALNLGETKALLAKAIN 207 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 LPE+EKL + LYY EEL ++EIG VL ESR+SQ+HS+A+ RLR KL K Sbjct: 208 ELPEKEKLTVALYYHEELTMREIGEVLGYTESRISQMHSKAMLRLRGKLKK 258 >UniRef50_D1BJ83 RNA polymerase sigma factor n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJ83_SANKS Length = 345 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 138/240 (57%), Gaps = 7/240 (2%) Query: 5 YTA-EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y A + L Y PLV A R+ ++LP++VE DL+ G GL++A+E+++ + Sbjct: 103 YKACADAPTRERLILHYAPLVTSVASRVGMKLPSTVEHADLVSYGMFGLIDAIEKFELDR 162 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F TYA RIRGA+LDELR+ DWVPRSVR AR V +A +LE L R T+ E+AE Sbjct: 163 EIKFETYATSRIRGAILDELRANDWVPRSVRSKARAVDRAHAELEARLHRAPTDPEIAEH 222 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE-----LVTDDHQRENPLQQLLDSNL 178 + I +++ R + + L + DE GD +E + +P + Sbjct: 223 MEIALSELRSIRHLVSTVNLVALDEVFGA-GDQVEPVGHLDTGHGARSTDPARTFESKET 281 Query: 179 RQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + + +A++ L EREK++L LYY E + L EIGAVL V ESR+SQ+H+ A+ RLR KL + Sbjct: 282 KFLLSQAMDQLGEREKIMLVLYYYEGMTLAEIGAVLGVTESRISQMHTAAMGRLREKLSR 341 >UniRef50_C1RMF4 RNA polymerase sigma factor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RMF4_9CELL Length = 328 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 137/232 (59%), Gaps = 5/232 (2%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + L YVPLV A R+ +RLP++VE DL+ G GL++A+E+Y + F + Sbjct: 91 AKAREVLILHYVPLVTAVAGRIGMRLPSTVEHADLVSYGMFGLIDAIEKYCTDRAVKFES 150 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA RIRGA++DELR+ DWVPRSVR AR V +A G+LE L R TE EVA+RL + ++ Sbjct: 151 YASSRIRGAIIDELRAMDWVPRSVRTKARAVDRAYGELEATLHRAPTEAEVAQRLELPVS 210 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGD-----SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + R + + + + DE D ++ D + ++P + + + Sbjct: 211 ELRAVYSQLASVNIAALDEMLAGSDDRPGAATLADTLGDRRADDPAGSVEAQETKYLLSR 270 Query: 185 AIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 AIE L ERE+LV+ LYY E + L EIG VL V ESR+SQ+H+ A+ RLRT+L Sbjct: 271 AIECLGERERLVVVLYYYESMTLAEIGRVLGVTESRISQIHTAAMGRLRTRL 322 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 243 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 12/242 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 +G + + + LV A R + R + L DL+Q G +GLL A+E++D +G Sbjct: 153 KEQGDEARQKMAAANLRLVVSIAKRYRDR---GLPLLDLIQEGSLGLLRAIEKFDHTKGY 209 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA I+ A+ L + +P + + A QL Q LGR T+TE+A Sbjct: 210 KFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELAN 269 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 LG+ R++ + + E ++ D + LRQ++ Sbjct: 270 HLGMSEEKLRELRRTAQDPVSLATPVGEEADS-TLADFIPDPHALDADDAAASGMLRQQI 328 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT-KLG 237 A++ L ERE+ VL L Y + L+E+G V RV Q+ +A+++LR +LG Sbjct: 329 AAALDQLSERERRVLELRYGLADGQPRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRLG 388 Query: 238 KL 239 KL Sbjct: 389 KL 390 >UniRef50_Q2RKC7 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKC7_MOOTA Length = 255 Score = 243 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 135/240 (56%), Gaps = 4/240 (1%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 S + + L +Y+PLV++ RL V+ P ++ +DLL G +GLL AV+RYD Sbjct: 10 TSYMAGRDALRRQELVLKYLPLVKYHVNRLAVKPPPHLDQEDLLGYGIVGLLEAVDRYDP 69 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 +G F T+A QRIRGA+LD LR W PRS+ R +Q QLEQE G ++ VA Sbjct: 70 SRGVNFETFASQRIRGAILDALRRAHWAPRSLIEKLRRASQVYRQLEQEQGGEVSDGAVA 129 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEW----REEHGDSIELVTDDHQRENPLQQLLDSN 177 LGI A+ R+++ + + S +++ E G + + D +P+ Sbjct: 130 RALGITEAELRELMERGSQMAILSLEDFLLDQEGEEGTTRGELLADPGSPDPVGIYEQGE 189 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LR+ + A+E L E+++LVLTLYY E L LKEIG VL + ESRV QLH +AI LR +L Sbjct: 190 LRRALAAALENLKEKDRLVLTLYYYEGLTLKEIGKVLGISESRVCQLHGRAILNLRRQLA 249 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 243 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 13/237 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y + H L + + LV A + R + DL+Q G +GL+ AV+++D + Sbjct: 203 YKQDYNKAMHQLCEANLRLVVSIAKNHKDR---GMHFLDLIQEGNLGLMKAVDKFDVDRN 259 Query: 65 TAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR A+ + + +P + ++ + L QELGR E+A Sbjct: 260 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIHKLTRISRTLLQELGREPKPEEIA 319 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQ 180 + + I R +L + + S ++ E DS + D + +PL S LR Sbjct: 320 KEMDITTEKVRDILRISQ--EPVSLEKPIGEEEDSHLGDFIPDTEVPSPLDVAFSSMLRD 377 Query: 181 RVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++E + TL ERE+ VL L + ++ L+E+G +V R+ Q+ S+AI++L+ Sbjct: 378 ELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLK 434 >UniRef50_Q0AYK8 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYK8_SYNWW Length = 260 Score = 242 bits (619), Expect = 7e-63, Method: Composition-based stats. Identities = 91/236 (38%), Positives = 150/236 (63%), Gaps = 4/236 (1%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E + + L + LV++ A RL + L + VELD+L+ G GL++A+E++D + Sbjct: 19 NEDIEARDQLIIHFAHLVKYVASRLAIHLSSLVELDELISYGIEGLIDAIEKFDHKRNIK 78 Query: 67 FTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 F TYA+ RIRG+M+D LRS DW+P S+R+ ++E+ +A +E LGR+A++ EVAE LG+ Sbjct: 79 FETYAITRIRGSMIDGLRSMDWIPVSLRQKSKELEKAYMNVEARLGRSASDAEVAEELGL 138 Query: 127 DIADYRQMLLDTNNSQLFSYDEW-REEHGD---SIELVTDDHQRENPLQQLLDSNLRQRV 182 ++ ++ +L D + + S D++ E G+ + + +DH + + + + ++ + Sbjct: 139 NLDEFAVLLRDVAATTIISLDDFLPGEDGEQKKRMLDLLEDHNSISASEIVEFNEVKDLL 198 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +AI LP++EKLV+ LYY E L LKEIGA + + ESR+SQLH++AI RLR L K Sbjct: 199 AKAISRLPDKEKLVVYLYYYEGLTLKEIGATISLSESRISQLHTKAILRLRGSLSK 254 >UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia RepID=Q5GSP3_WOLTR Length = 649 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 112/241 (46%), Gaps = 14/241 (5%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 + E K + + + LV A + R + L DL+Q G IGL+ AV+++D Sbjct: 402 TQKHEREVSEAKQGMIKANLRLVVSIAKKYSNR---GLALLDLIQEGNIGLMKAVDKFDY 458 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TY +R ++ + + +P + ++ +A+ +L E+GR T Sbjct: 459 KRGYKFSTYGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKLTHEMGREPTLE 518 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSN 177 E++ LG+ + R+++ + S D + + +D + P + ++ Sbjct: 519 ELSMELGMPLERIRKVMKIARDP--VSLDAPTGKDDSSTFGDCIEDKRVSKPEDAAILTD 576 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQ-----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 LR + TL +E+ ++ + + +E L+EIG + +V R+ Q+ S+A+++L Sbjct: 577 LRCITTNLLATLTPKEERIIRMRFGLGKDCKEHTLEEIGCIFKVTRERIRQVESKALRKL 636 Query: 233 R 233 + Sbjct: 637 K 637 >UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD Length = 366 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 107/231 (46%), Gaps = 11/231 (4%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + + LV A + + R V DL+Q G IGL+ A E++D +G F+TYA Sbjct: 129 SKDKLVEANLRLVVSIAKKYRNR---GVSFLDLIQEGNIGLIRAAEKFDYRKGFKFSTYA 185 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + + + ++ Q LGR T+ EVAE LG+ + Sbjct: 186 TWWIRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALGREPTDEEVAEELGVPV 245 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + ++ + S ++ S+ +D P + +S L+ + EA++ Sbjct: 246 EEVLRLQEISQRSISLETPVG-DDESSSLGDFLEDASAVTPTDAVSESLLKLHLREALDE 304 Query: 189 LPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 LPERE+ ++ + + L+E+G ++ RV Q+ + + LR + Sbjct: 305 LPERERQIIEMRFGMKDDRPRTLEEVGREFDITRERVRQIQMKTLNLLREQ 355 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 113/230 (49%), Gaps = 13/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+TYA Sbjct: 470 AKSELVEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYA 526 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + ++ + L QE+GR T E+AE++ + + Sbjct: 527 TWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPL 586 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 R++L + S + E DS + +D +P +++ NL ++ + + Sbjct: 587 DKVRKVLKIAK--EPISLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKVLA 644 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE+ VL + + + L+E+G EV R+ Q+ ++A+++LR Sbjct: 645 TLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 694 >UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU Length = 698 Score = 241 bits (616), Expect = 1e-62, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 107/234 (45%), Gaps = 11/234 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+ K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 453 AKSRRAKKEMIEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 509 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ QE G AT E+ R Sbjct: 510 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRR 569 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + R++L +E + + +D E+P+ + L + Sbjct: 570 MDMPEEKVRKVLKIAKEPISMETPIGEDEDSN-LGDFIEDINMESPVDFATSAGLMEATR 628 Query: 184 EAIETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E + TL RE VL + + ++ L+E+G +V R+ Q+ ++A+++LR Sbjct: 629 EILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 682 >UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A + L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 131 AGDEEAQKRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIKAVEKFDYNKGYK 187 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL Q+LGR T E+A+ Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPTPEEIAKE 247 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I + R+++ + S + E DS + +D P L++++ Sbjct: 248 MEIGVDRVREIMKIAQ--EPVSLETPIGEEEDSHLGDFIEDQDAPAPADAASFMLLKEQL 305 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL RE+ VL L + + L+E+G V R+ Q+ ++A+++LR Sbjct: 306 EDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLR 360 >UniRef50_A0Q044 RNA polymerase sigma factor n=30 Tax=Clostridium RepID=A0Q044_CLONN Length = 242 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 129/238 (54%), Gaps = 2/238 (0%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 + A +K + ++Y+PLV++ A R+ + +E +DLL G +GL++A ++D + Sbjct: 1 MSIASNDHNKEEIVKKYIPLVKYIASRVIIGKTKYIEFEDLLGYGMLGLMDAFNKFDKSK 60 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F+TYA RIRG+M+DE+R + + + AI L++ ++A+ Sbjct: 61 GMKFSTYASIRIRGSMIDEIRKNSPISKGAMDKLNKYNSAIESLQKRNLAEPNIKDIAKE 120 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV--TDDHQRENPLQQLLDSNLRQR 181 L + + ++ N + S ++ D I L+ +D NP ++ + + Sbjct: 121 LDMTVKQVGEIENFINYISIVSLEDLIFSEDDDISLMGTIEDINSPNPEEEYENDEKLEY 180 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + + ++ L E+++ VL+LYY EE+ LKEIG +L V ESRV QLHS+AI LR +L KL Sbjct: 181 LSKGLDMLNEKDRTVLSLYYYEEMTLKEIGKILGVSESRVCQLHSRAIVHLRKELAKL 238 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 11/233 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 E K L + + LV A R R + DL+Q G IGL+ AV++++ +G F Sbjct: 343 EISQAKKELVKANLRLVVSIAKRYANR---GMHFFDLIQEGNIGLIKAVDKFEYKKGYKF 399 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + VP + +V + QE GR+ E+AERL Sbjct: 400 STYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERL 459 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 G + + + EE + + D + E P+ S L +++ + Sbjct: 460 GWPVQKVKMVKNVAREPISLEIPVGSEEDSE-LGDFIPDTEVETPVNAAASSILAEQIRQ 518 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TLP RE+ V+ + + L+E+G +V R+ Q+ ++A++RLR Sbjct: 519 VLHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLR 571 >UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 Tax=Actinomycetales RepID=HRDA_STRCO Length = 396 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 13/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + K L + + LV A R R + + DL+Q G +GL+ AVE++D +G F+ Sbjct: 156 GRLAKRRLIEANLRLVVSVAKRYVGR---GLTMLDLVQEGNLGLIRAVEKFDYARGYKFS 212 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR AM L + VP V V + ++ QE G T EVA L Sbjct: 213 TYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLD 272 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + ++L + S E D ++ + +D +P++ LRQ + Sbjct: 273 LAPERVGEVLRLAQ--EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEA 330 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + TL ERE+ V+ L Y L+EIG + V R+ Q+ S+ + +LR Sbjct: 331 VLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 385 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 11/235 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 +G + L + + LV A R R + L DL+Q G +GL+ AV+++ +G Sbjct: 266 RRDGEAARRKLTEANLRLVVSIAKRYTGR---GLTLLDLIQEGNLGLMRAVDKFQTHKGF 322 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ L +P + V++ QL QELGR T +E+A Sbjct: 323 KFSTYATWWIRQAITRALADHARTIRLPVHLVETLNRVSRVARQLTQELGREPTTSELAA 382 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R++L + +EE ++ +D + PL S LR++V Sbjct: 383 AVNMPLDRLRELLQAAQDPVSLEAPVGQEEES-TLGDFLEDERAVAPLDAAALSLLREQV 441 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL ERE+ VL + + E L+E+G V RV Q+ ++A+++LR Sbjct: 442 QSLLATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLR 496 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 111/231 (48%), Gaps = 11/231 (4%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+T Sbjct: 353 EQAKRELIEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 409 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ + QL QELGR T E+A R+ I Sbjct: 410 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTSEEIARRMDI 469 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 +A R++L EE + +D Q +P + ++ NL++ + + Sbjct: 470 PVAKVRKVLKIAQEPISLETPIGEEEDSH-LGDFIEDSQAVSPSEAVISVNLKEYTSQVL 528 Query: 187 ETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE+ V+ + + E L+E+G +V R+ Q+ ++A+++LR Sbjct: 529 RTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLR 579 >UniRef50_C0QXY0 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QXY0_BRAHW Length = 275 Score = 239 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 143/233 (61%), Gaps = 6/233 (2%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPAS--VELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 + +L +Y PLV++ A ++ V + + +E DL+ G GL++A+++Y+ + F TY Sbjct: 38 REALIIKYSPLVKYVASKISVNMGSHKHIEFQDLVGFGSFGLMDAIDKYNPNRDIKFKTY 97 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 AV RIRGA+ DELR D++PRS+R++ +E+ +A LE L RN E+A+ LGI I+ Sbjct: 98 AVTRIRGAIYDELRKLDYLPRSIRKDVKEIEKAREILEARLSRNIKPQEIADMLGIPISK 157 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDD----HQRENPLQQLLDSNLRQRVMEAI 186 Y + + + S + DS E+ D + + NP +++ +++ A+ Sbjct: 158 YNETMKRYIEASPTSLSDVWYVGDDSDEISVIDTLKSNDKTNPEYLAEREDVKNKIIAAL 217 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + LPE+E+ VL LYY ++L LKEIG VLEV ESR+SQLH++AI++LR L ++ Sbjct: 218 KKLPEKEQQVLILYYYDDLTLKEIGKVLEVSESRISQLHTKAIQQLRYSLSEI 270 >UniRef50_C4ZA81 RNA polymerase sigma factor n=3 Tax=Clostridiales RepID=C4ZA81_EUBR3 Length = 255 Score = 239 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 131/226 (57%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y LVR A RL + L +VE DDL+ G GL++A+++++ + F TYA Sbjct: 22 REQLIIEYAQLVRLVAGRLSMYLGHNVEYDDLVSYGIFGLIDAIDKFNLEKNVKFETYAS 81 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+LD++R DW+PR+VR+ R++ +AI +E G+ A + ++A+ L I + Sbjct: 82 LRIRGAILDQIRKMDWIPRTVRQRQRKIDEAIKNIELRTGKTANDADLAKELSISEDELC 141 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 + + S DE+ E + + + P + + L+ ++++++ L E+ Sbjct: 142 SWQSQLKVTNVVSLDEFDESGPEPVMDAAHNSHYAQPEEIVTQEELKTMLVKSLDNLTEK 201 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E+ V+ LYY E+L LKEI +LEV ESRVSQLH++ + ++R +G Sbjct: 202 ERRVIELYYYEDLTLKEISNILEVSESRVSQLHTKGLIKMRKVMGP 247 >UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacterium prausnitzii RepID=C7H329_9FIRM Length = 461 Score = 239 bits (611), Expect = 5e-62, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 11/237 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 +G+ + SL + + LV A + + ++ DL+Q G IGL+ A E++D +G Sbjct: 218 RRDGLNARRSLSEANLRLVVSIAKK---HVGHNLAFLDLIQEGNIGLIKAAEKFDCDRGF 274 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P + + QA QL + G T E+A+ Sbjct: 275 RFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAK 334 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R++ EE S+ D E P + + + Q++ Sbjct: 335 AMDMSVERVREIQRMAQEPASLESPVGEEEDS-SLGDFVADENAEAPGKAADRAMVAQQI 393 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 +A+++L RE+ V+ L + L+E+G V RV Q+ ++AI++L ++ Sbjct: 394 NQALKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSR 450 >UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria RepID=C7NC70_LEPBD Length = 392 Score = 239 bits (610), Expect = 8e-62, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 11/229 (4%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + + LV A + R +++ DL+Q G +GL+ AVE+++ +G F+TYA Sbjct: 155 AKQKLIESNLRLVVSIAKKHTNR---GLKMLDLIQEGNMGLMKAVEKFEYEKGFKFSTYA 211 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + ++ + + QE G+ T E+AE+L + + Sbjct: 212 TWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPV 271 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + +L + EE + + V DD NP L++++ E ++T Sbjct: 272 EKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDK-FANPYDATTRILLKEQLDEVLKT 330 Query: 189 LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L ERE++VL Y + L+E+G + V R+ Q+ +A+++LR Sbjct: 331 LNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRKLR 379 >UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 E K + + + LV A + R ++L DL+Q G IGL+ AV+++D +G F Sbjct: 409 EVSEAKQEMIKANLRLVVSIAKKYSKR---GLDLLDLIQEGNIGLMKAVDKFDYKRGYKF 465 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TY +R ++ + + +P + ++ +A+ ++ E+GR T E++ L Sbjct: 466 STYGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVEL 525 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + + R+++ + +++ + + +D + P + ++LR Sbjct: 526 TMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCI-EDKRVSRPEDAAILADLRGITTN 584 Query: 185 AIETLPEREKLVLTLYY-----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL +E+ +L + + +E L+E+G + V R+ Q+ ++A+++L+ Sbjct: 585 VLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 638 >UniRef50_C0GJF8 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJF8_9FIRM Length = 239 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 106/223 (47%), Positives = 143/223 (64%), Gaps = 6/223 (2%) Query: 14 HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQ 73 +L ++Y+PLVR A RL + LPA V DDLLQAG +GLL A++R+D +G F ++A Sbjct: 20 ETLVEKYLPLVRLHAGRLALGLPAHVNRDDLLQAGMLGLLEALQRFDPTRGVKFESFAAL 79 Query: 74 RIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQ 133 RIRGAMLDELR WVPRSV R RE+ +A+ +L +LGR E E+AE++GI I R+ Sbjct: 80 RIRGAMLDELRRLCWVPRSVVREMREMDRAVQELATQLGREPAEEEIAEKMGITIPQLRK 139 Query: 134 MLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 + N+S L S ++ + + D L +L+ + RQR+ EAI LPER Sbjct: 140 ITGMINSSSLLSLEDTL------LAVPAVDGPEVEALDRLIAAEDRQRLAEAIGQLPERH 193 Query: 194 KLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + +L LYYQE+L LKE+G VL V ESRV QLH++ I RLRT L Sbjct: 194 QQLLALYYQEDLTLKEVGLVLGVTESRVCQLHARIIARLRTAL 236 >UniRef50_D1C190 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C190_SPHTD Length = 264 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 142/226 (62%), Gaps = 1/226 (0%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + +L ++Y PLV++ RL+V L A+++ DDLL G IGL+ A++R+D +G F T+A+ Sbjct: 30 REALIRQYAPLVKYVVDRLRVALTATLDRDDLLGYGTIGLIEAIDRFDPERGVKFETFAI 89 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 QRIRGA++D +R+ D VPR+ R+ AR + QA ++ GR E EVA LG+ I +R Sbjct: 90 QRIRGAIIDAVRTLDLVPRTARQRARAIEQAYREIFAATGRMPPEEEVAAHLGMTIDAFR 149 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 Q L D + L R+ G ++E D Q PL + S+L R+ A+E LPER Sbjct: 150 QALQDAACAILPLQQSDRDGEG-TLEDTLPDAQATEPLDAAVRSDLVHRLAAALERLPER 208 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++L++TLYY EEL L+EI VL + ESRVSQL S+A +LR L + Sbjct: 209 DRLIVTLYYYEELTLREISEVLGITESRVSQLLSRARLQLRALLHE 254 >UniRef50_UPI00016C0EF8 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EF8 Length = 247 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 98/235 (41%), Positives = 147/235 (62%), Gaps = 6/235 (2%) Query: 5 YTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y + K L + Y PLV+ A RL + L + +ELDDLL G IGL++A+++YD + Sbjct: 11 YKKTKSRELKEQLIEHYAPLVKIVAGRLGIYLNSYLELDDLLGFGVIGLIDAIDKYDYDK 70 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F TYA RIRGA++DE+R DWVPRS+R+ +E +A ++E ++G + T+T+V + Sbjct: 71 KIKFETYASLRIRGAIIDEIRKLDWVPRSIRQKQKEYIRAYERVEAKIGHSPTDTDVRKE 130 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L I+ ++Y +++ DTN S L S DE + E +D +NP Q+L + + + Sbjct: 131 LNINESEYNKLVHDTNISTLVSIDE-----SELYEFNIEDITTKNPYQELENKEALEILE 185 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 I L ERE+L++ LYY EEL LKEI +LE+ ESRVSQ+HS+ + +LR KL K Sbjct: 186 HEILALTEREQLLIKLYYYEELTLKEISLILEISESRVSQIHSKLMVKLRNKLKK 240 >UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Frankia sp. EuI1c RepID=D1V958_9ACTO Length = 393 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 9/233 (3%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 AE + L + ++PLV + A R + R LDDL+Q IGL+ +V+R+D +G Sbjct: 163 AERAAIRDQLVRMHLPLVEYLARRFRNR---GEPLDDLVQVATIGLIKSVDRFDPERGVE 219 Query: 67 FTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA I G + R + W VPR ++ + +A +L Q+LGR+ T E+A Sbjct: 220 FSTYATPTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQKLGRSPTVAEIAAH 279 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L + + + L N S D +S + ++ + L R+ + Sbjct: 280 LEMTEEEVLEGLESANAYSAVSLDAPDSGDDESPAVADTLGVQD---ESLEGVEYRESLK 336 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +E LP REK +L L + + +I L + + VS+L ++ + +LR L Sbjct: 337 PLLEKLPPREKRILLLRFFGNMTQSQIAIELGISQMHVSRLLARTLAQLRRGL 389 >UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E8_9CHLO Length = 595 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 12/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K+++ Q + LV A R + S+ DL+Q G +GL+ E++D +G F+ Sbjct: 342 GKRAKNAMIQANLRLVVSIAKRYANK---SMSFQDLIQEGCVGLIRGAEKFDFKRGYKFS 398 Query: 69 TYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + +++ Q+ +LGR+ T E+A+ + Sbjct: 399 TYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTHEELADAME 458 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD--SIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + +Q+ + S D ++E D E+P + L++ + Sbjct: 459 MTVEKIKQIKKASLVPISLSQTVNNSNGEDKRTVEDTLIDDYTEHPEGETGKVLLKEDLE 518 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + TL RE+ VL L Y + L+EIG V V R+ Q+ ++A+++LR Sbjct: 519 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 573 >UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellular organisms RepID=RPOD_SYNY3 Length = 425 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 12/229 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K + Q + LV A + R + DL+Q G +GL+ A E++D +G F+TYA Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 245 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + + + L QE+ R TE E+AE++ + I Sbjct: 246 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTI 305 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 R + +EE + + D E P ++ + LR+ + ++T Sbjct: 306 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDT 363 Query: 189 LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 364 LSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 10/238 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + + Q + LV A + + L DL+ G IGL+ AV+R+D +G Sbjct: 36 GDQEARRQMIQANLRLVVKIAHDYAN---SGLPLPDLISEGNIGLMKAVDRFDPSKGGKL 92 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA I+ ++ L ++ +P + ++ + QL + LGR+ T+ E+AE L Sbjct: 93 STYAAWWIKQSIKRALANQSKTIRLPVHLVDKIAKMRRVAMQLSEILGRDPTDEELAEEL 152 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 G+ ++ EE G ++ + D +P Q +LD NL+ +ME Sbjct: 153 GMSTTKVAELRTIAIRPASLDATVGEEEDGTALGELVKDESAASPDQSVLDQNLKNTIME 212 Query: 185 AIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + L ERE+ +L+L + E++ L+EIG V R+ QL + A++++R +L K Sbjct: 213 LLPKLDERERKILSLRFGLEGNEQMTLEEIGKEFHVTRERIRQLQNIALRKIRKELEK 270 >UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKM1_THEYD Length = 479 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 14/239 (5%) Query: 4 LYTAEGVMD--KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 +Y A+ +++ K+ L R + LV + A R + L DL++ G IGL+ AV+++ Sbjct: 226 IYKAKCLVEDTKNELITRNLRLVVNIAKNYVGR---GLPLLDLIEEGNIGLMKAVDKFKY 282 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ L + VP + V +A +L Q+LGR Sbjct: 283 EKGFKFSTYATWWIRQAITRALIDQTKTIRVPVHMMEFYNRVTKASRELTQQLGREPNNE 342 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNL 178 E+AE+LG+ + ++ + + +E D +P+ + + L Sbjct: 343 EIAEKLGVPVRKVEEVFRAIQDP--IGLQTPIGDEDTELEDFIGDKTSPSPVSEAERTEL 400 Query: 179 RQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + ++TL +E+ V+ + + + L+E+G L + RV Q+ ++A+++L+ Sbjct: 401 SEHIQRILKTLTPKEEKVIKMRFGIGEDRDHTLEEVGRYLSITRERVRQIETKALRKLK 459 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 114/230 (49%), Gaps = 13/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+TYA Sbjct: 401 AKAELVEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYA 457 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + ++ + L QE GR T E+AE++ + + Sbjct: 458 TWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMELPL 517 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 R++L + S + E DS + +D +P + +++ NL ++ + ++ Sbjct: 518 DKVRKVLKIAK--EPISLETPIGEEEDSHLGDFIEDKSVISPAEAVINMNLAEQTRKVLK 575 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE+ VL + + + L+E+G EV R+ Q+ ++A+++LR Sbjct: 576 TLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 625 >UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WS32_CYAA5 Length = 416 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 12/232 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + + LV A + R + DL+Q G +GL+ A E++D +G F+ Sbjct: 177 GRKAKDKMVHSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 233 Query: 69 TYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + L QE+ R TE E+A R+ Sbjct: 234 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRME 293 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + I R + +EE + + D E P ++ + LR+ + Sbjct: 294 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENV 351 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 352 LDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 >UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellular organisms RepID=RPOD1_SYNE7 Length = 399 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 12/229 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K + Q + LV A + R + DL+Q G +GL+ A E++D +G F+TYA Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 219 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + + + L QE+GR TE E+A R+ + I Sbjct: 220 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 279 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 R + +EE + + D E P ++ + LR+ + + T Sbjct: 280 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVAKNLLREDLEGVLST 337 Query: 189 LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 338 LSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386 >UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ51_DESPS Length = 534 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 13/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K +L + + LV + R R ++ DL+Q G IGL+ AVE++D +G F+TYA Sbjct: 296 AKEALVRANLRLVISVSKRFVNR---GLQFSDLIQEGNIGLMKAVEKFDYRRGFKFSTYA 352 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR ++ + + +P + + + E R + EVA +LG ++ Sbjct: 353 TWWIRQSITRGIADQGRTIRLPVHMIETINRMLRVSKDFYLEEHREPSVEEVAGQLGTEV 412 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 + L ++ S D + G++ + D P + ++L++ + + + Sbjct: 413 DKVKSALKIAKDA--ISLDTPVGDDGETYLGDFIVDKNCLGPDGFAMVASLKECLSQVLS 470 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +L RE+ VL + Y E L+E+G V R+ Q+ +QAI +L+ Sbjct: 471 SLSPREEKVLKMRYGILEKREYTLEEVGRCFNVTRERIRQIEAQAISKLK 520 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 12/232 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + + LV A + R + DL+Q G +GL+ A E++D +G F+ Sbjct: 140 GRKAKDKMVHSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 196 Query: 69 TYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + L QE+ R TE E+A R+ Sbjct: 197 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRME 256 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + I R + +EE + + D ENP ++ + LR+ + Sbjct: 257 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ENPEDEVSKNLLREDLENV 314 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 315 LDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366 >UniRef50_Q2LT13 RNA polymerase sigma factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT13_SYNAS Length = 261 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 148/236 (62%), Gaps = 3/236 (1%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASV-ELDDLLQAGGIGLLNAVERYDALQGT 65 D+ +L +Y+P V+ R+ ++P + +DL+ G IGL++A+E+YD + Sbjct: 24 NADKKDREALILKYLPFVKAVVGRMASKIPIDAGDKEDLIHVGIIGLMSAIEKYDTRRNV 83 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA RIRGA+LDELR+RDWVPR+VR E+ +AI L++ L R + E++E LG Sbjct: 84 RFETYAGIRIRGAVLDELRARDWVPRAVRSRDNEITKAISSLQKILRRAPDDHEISEYLG 143 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD--SIELVTDDHQRENPLQQLLDSNLRQRVM 183 + I +Y ++L D+ L S ++ ++ D S V ++ + L + D R ++ Sbjct: 144 LSIEEYFKLLDDSRCISLISSEDLPGDYLDRYSCSDVIRAVEQGSALDLITDHEFRMQLK 203 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +A+E LP++E+LVLTLYY EEL +KEIG VL++ ESRV QLHSQAI RLR + K+ Sbjct: 204 KAMELLPDKERLVLTLYYYEELTMKEIGKVLDLTESRVCQLHSQAIFRLRAAVKKI 259 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 236 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 109/230 (47%), Gaps = 11/230 (4%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 + K + + LV H A R + DL+Q G IGL+ AV++Y+ L G F+T Sbjct: 365 VAKKKMVESNTRLVVHVAKPYVNR---GLPFLDLIQEGNIGLMKAVDKYNYLLGYKFSTC 421 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A +R ++ + + +P + ++ + Q+ ELG T +E+AE+L + Sbjct: 422 ATWWVRQSISRAVADQARTIRIPVHMADTISKIVRVSKQMHNELGYEPTASEIAEKLSMP 481 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 I ++++ + EE G + +D P+++ + +LR+ A+ Sbjct: 482 IDKVKKVMRIAKEPVSLE-NPIGEEDGSCLSDFIEDKNAILPIEEAIKFSLRETTTRALS 540 Query: 188 TLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL RE+ VL L + L L+E+G +V RV Q+ ++A+++L+ Sbjct: 541 TLTAREERVLRLRFGIGLPTDYTLEEVGGEFKVTRERVRQIEAKALRKLK 590 >UniRef50_B2A375 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A375_NATTJ Length = 250 Score = 236 bits (604), Expect = 4e-61, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 142/243 (58%), Gaps = 5/243 (2%) Query: 1 MNSLYTAEGVMDK---HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVE 57 +N + + + D+ L Y LV+ + ++ + + DDL+ G IGL++A++ Sbjct: 3 LNLITSYQDSGDRQQLEKLISEYSYLVKKQVDKVNYPSISGLNRDDLISFGVIGLIDAIK 62 Query: 58 RYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 ++D + F YA RIRGA+LD LR D+VPR++R + + +LEQ+LGR T Sbjct: 63 KFDINRNVPFEAYANIRIRGAILDGLRKFDFVPRNLREEMKTLHSEYRKLEQKLGRTPTN 122 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSY-DEWREEHGD-SIELVTDDHQRENPLQQLLD 175 E+A ++ I A+ ++ TN D E G+ ++E + D +P ++ + Sbjct: 123 NELAYQMSISEAELDKLWQATNCVIPSYLSDYITAEEGELTLEDIYPDSNSPDPQSRIDE 182 Query: 176 SNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 +Q + +AI+TLP++EKLVL+LYY EEL LKEI +LE+ ESR+SQLHS+A+ RLR K Sbjct: 183 KTTKQELGQAIDTLPQKEKLVLSLYYYEELTLKEIAKILELTESRISQLHSKAVLRLRGK 242 Query: 236 LGK 238 L K Sbjct: 243 LAK 245 >UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=95 Tax=Actinomycetales RepID=A8L2N7_FRASN Length = 376 Score = 236 bits (603), Expect = 4e-61, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 9/233 (3%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E + L + ++PLV + A R + R LDDL+Q IGL+ +V+R+D +G Sbjct: 146 PERAALRDQLVRMHLPLVEYLARRFRNR---GEPLDDLVQVATIGLIKSVDRFDPERGVE 202 Query: 67 FTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA I G + R + W VPR ++ + +A +L Q LGR+ T +E+A Sbjct: 203 FSTYATPTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQSLGRSPTVSEIARH 262 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L + + + L N S D + D V D ++ + L R+ + Sbjct: 263 LEMSEEEVLEGLESANAYSAVSLDAP-DSGDDEAPAVADTLGVQD--ESLEGVEYRESLK 319 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +E LP REK +L L + + +I L + + VS+L ++ + +LR L Sbjct: 320 PLLEKLPPREKRILLLRFFGNMTQSQIANELGISQMHVSRLLARTLAQLRRGL 372 >UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilonproteobacteria RepID=RPOD_HELPJ Length = 681 Score = 236 bits (603), Expect = 5e-61, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 12/231 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K+ + + + LV A R R + DL+Q G IGL+ AV++++ +G F+TYA Sbjct: 442 AKNKMAKSNLRLVVSIAKRFTSR---GLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYA 498 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 I+ A+ + + +P + + + + + QE G+ VAE +G+ + Sbjct: 499 TWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSL 558 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + ++ T ++ G + V +D + + ++ +L+ ++ ++ Sbjct: 559 DKVKNVIKVTKEPISLETPVGNDDDGKFGDFV-EDKNIVSSIDHIMREDLKAQIESVLDQ 617 Query: 189 LPEREKLVLTLYYQ-----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 L EREK V+ + + + L+EIG L V RV Q+ S AIK+LR+ Sbjct: 618 LNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRS 668 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 12/232 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + Q + LV A + R + DL+Q G +GL+ A E++D +G F+ Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 207 Query: 69 TYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + L QE+GR TE E+A R+ Sbjct: 208 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRME 267 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + I R + +EE + + D E P Q+ + LR+ + + Sbjct: 268 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG--ETPEDQVSKNLLREDLEKV 325 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +++L RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 326 LDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377 >UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=A6G972_9DELT Length = 547 Score = 236 bits (602), Expect = 6e-61, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 13/238 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 E K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 303 RREREAAKAELVEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYQRGY 359 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + VP + + ++ + QL QE GR T E+AE Sbjct: 360 KFSTYATWWIRQAITRAISDQARTIRVPVHMIESINKLIRTTRQLVQEFGREPTHQEIAE 419 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQR 181 ++ + + R +L + S + E GD S+ + +D +P +++ +L Sbjct: 420 KMNMPVEKVRSILRIAK--EPISLETPLGEDGDSSLGDLIEDKNALDPGSGVVERHLGDE 477 Query: 182 VMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 A+ +L RE+ +L L + + L+E+G V R+ Q+ ++A+ +LR Sbjct: 478 TRRALASLTPREEKILRLRFGIGEASDHTLEEVGRDFSVTRERIRQIEAKALSKLRKA 535 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 236 bits (602), Expect = 7e-61, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+ K + + + LV EA + R + D++Q G IGL+ AV+++D +G Sbjct: 335 AKITQAKKEMIEANLRLVVSEAKKYTNR---GLHFLDIIQEGNIGLMKAVDKFDYRKGFK 391 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + VP + +V + Q+ QE GR ATE E+ E Sbjct: 392 FSTYATWWIRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEEEIIEY 451 Query: 124 L-GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + +++L ++ +E ++ +D +P++ NLR+ + Sbjct: 452 TPNMTKDKLKKILNISHTPISMESPIGDDEDS-TVGDFIEDKNNYSPIEAANLENLREAI 510 Query: 183 MEAIET-LPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E I+T L ERE VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 511 KELIDTGLTEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLK 566 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 235 bits (601), Expect = 8e-61, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 115/243 (47%), Gaps = 13/243 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + K LV A R + S+++ DL+QAG IGL+ AVE+YD +G Sbjct: 58 NSSSVAKEKFINSNYRLVVSIAKRYKR---DSIDMLDLIQAGNIGLIKAVEKYDYKKGYK 114 Query: 67 FTTYAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA I+ ++ + +P + + V + +L L R T E+A+ Sbjct: 115 FSTYATWWIKQSITRYIDDCENTIRIPIHLHQRINFVKKKKQELLNVLLREPTIDEIADA 174 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPL-QQLLDSNLRQRV 182 G+++ ++L N +E +E + D ++ + ++ NL++++ Sbjct: 175 CGLEVDKVLELLRRDKNVVSLDTPLKEDEDSSLVEFIPSDADFKDVVIHEVEQHNLKEKI 234 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR--TKL 236 E + L E+E+ VL + + + L++IG V V R+ Q+ ++AI++LR +KL Sbjct: 235 EELLTGLGEQEQQVLRMRFGIDDDDPKTLEQIGKVFGVTRERIRQIEAKAIRKLRHPSKL 294 Query: 237 GKL 239 +L Sbjct: 295 KQL 297 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 235 bits (601), Expect = 9e-61, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 112/231 (48%), Gaps = 11/231 (4%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + DK L + + LV A + + +++EL DL+Q GG+GL+ AVE+++ +G F+T Sbjct: 331 LQDKLKLIKANLRLVVSIAKK---HVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFKFST 387 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR ++ + + +P ++ ++ + + QE GR + + ++ L + Sbjct: 388 YATWWIRQSINRAIADQANTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRL 447 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + + +L + S +E + +E +D NP D +Q V E + Sbjct: 448 SMEKVKGVLKIMQDPISLSTPVGEDEDSN-LEDFIEDKAGANPTVTASDFLRKQEVSEVL 506 Query: 187 ETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL ERE ++ L + L+E+G + V RV Q+ ++AI++LR Sbjct: 507 NTLSEREAKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLR 557 >UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R030_BRAHW Length = 587 Score = 235 bits (601), Expect = 9e-61, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 113/237 (47%), Gaps = 13/237 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K + + + LV A + R + DL+Q G IGL+ AV++++ +G F+T Sbjct: 347 AQAKDHIVKANLRLVIAIAKKYVNR---GLHFFDLVQEGNIGLIKAVDKFEYKKGYKFST 403 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + VP + +V + + Q Q+ GR + E+A+ L Sbjct: 404 YATWWIRQAITRSISDQARTIRVPVHMIEQINKVQRVLRQYMQQHGREPSIQEIAKALSW 463 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + + + + S + + D+I + +D + E+P LR+++ Sbjct: 464 PESRVKSVRNVAKDP--VSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILRKQIDSI 521 Query: 186 IETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +++LP+RE+ V+ + + L+E+G V +V R+ Q+ ++AI+RLR + K Sbjct: 522 LDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLRAQSKK 578 >UniRef50_B8FTP4 RNA polymerase sigma factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FTP4_DESHD Length = 248 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 92/225 (40%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 17 WQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIR 76 ++Y+PLV+ + RL + LP V+ DDL+ G GLL+A+ER+D ++G F TYA RIR Sbjct: 18 IEKYLPLVKRISGRLLISLPQHVDEDDLIGYGVFGLLDALERFDPVRGVKFETYATLRIR 77 Query: 77 GAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLL 136 GA++D LR+ DWVP S R+ + + A ++E GR A+ EVA L ++ D L Sbjct: 78 GAIIDGLRTMDWVPHSARQKIKRIQDAFAEVEARHGRPASNEEVAVLLEMEPRDLEAALH 137 Query: 137 DTNNSQLFSYDE---WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPERE 193 L S DE E + D + Q++ ++ + +AIE LPE+E Sbjct: 138 QGQMLTLTSLDEVAVGEEGEAYTPRTQLTDPIAQEAFQEVELDEQKKILADAIEKLPEKE 197 Query: 194 KLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 KLV+ LYYQE+L LKEI ++++ ESR+SQLHSQAI RLR +L + Sbjct: 198 KLVVALYYQEDLTLKEIAVIMKLSESRISQLHSQAILRLRGRLSR 242 >UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamydiales RepID=RPOD_CHLPN Length = 572 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 107/231 (46%), Gaps = 11/231 (4%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K + + + LV A + R + DL+Q G +GL+ AVE+++ +G F+T Sbjct: 315 QEAKKEMVESNLRLVISIAKKYTNR---GLSFLDLIQEGNMGLMKAVEKFEYRRGYKFST 371 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + +V + +L E G+ T E+AE LG+ Sbjct: 372 YATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGL 431 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 R++ + + + + +D E+P + S L+ ++ E + Sbjct: 432 TPDRVREIYKIAQHPISLQAEVGEGSESSFGDFL-EDTAVESPAEATGYSMLKDKMKEVL 490 Query: 187 ETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +TL +RE+ VL + + L+E+G+ V R+ Q+ ++A++++R Sbjct: 491 KTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMR 541 >UniRef50_B8CYP4 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYP4_HALOH Length = 254 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 132/235 (56%), Gaps = 4/235 (1%) Query: 5 YTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y +G + + L Y+PLV+++ R+++ +P +E DDL G IGL++A+E+YD Sbjct: 17 YKGKGSQEARKELILNYLPLVKYQVERVKMIIPDFIEEDDLESYGIIGLIDAIEKYDYRL 76 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F TYA +RIRG+++D LR DW+P S+RR +E+ + +L +ELGR T E+A + Sbjct: 77 GIKFNTYASRRIRGSIIDHLRKLDWLPHSLRREGKELQKVADKLAKELGRKPTVAELANK 136 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 I ++ N+++ S E+ G+S P + L + + Sbjct: 137 TNISREKVTKIYSKLNSAKWVSL---YEDWGESTVFNFIKGDCLPPDRILDKKERIKLLA 193 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 AI+ L E E+ V++LYY EEL KEI V+ + +R+SQ+H +A+ RLR L + Sbjct: 194 RAIDRLSESERTVISLYYYEELTQKEIAEVMGLSPARISQIHKRAVYRLRGYLAR 248 >UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrelia RepID=RPOD_BORBU Length = 631 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 13/233 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + + LV A + R + DL+Q G IGL+ AVE+++ +G F+T Sbjct: 389 QHAKDQLIKANLRLVVSIAKKYANR---GLHFFDLVQEGNIGLIKAVEKFEYKRGFKFST 445 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + VP + + + L Q LG++ T+ E+++RLG Sbjct: 446 YATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELSDRLGW 505 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 ++ + + + + + S + E DS + +D +NP L+ ++ Sbjct: 506 ELKKVKTV--KSVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHTSFVVLQDQIRAI 563 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + TLPERE+ V+ + + E L L+E+G V R+ Q+ S+A++RL+ Sbjct: 564 LGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKN 616 >UniRef50_D2QYQ7 RNA polymerase, sigma 28 subunit, FliA/WhiG n=7 Tax=Planctomycetaceae RepID=D2QYQ7_9PLAN Length = 261 Score = 234 bits (599), Expect = 1e-60, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 145/230 (63%), Gaps = 7/230 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ L + Y+PLV++ R+ RLP VELDDL+ AG GL++A++ +D +G F TY V Sbjct: 28 RNLLVEHYLPLVKYNGERIWARLPEGVELDDLISAGIFGLMDAIDAFDMTRGVKFETYCV 87 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGAMLDELR+ DWVPR VR A ++ +A LE LGR+ T E+A ++ + + + Sbjct: 88 PRIRGAMLDELRTMDWVPRLVRSKASKLGEATKTLEARLGRHPTTVELAAQMEMSVPEVE 147 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIE----LVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 +M+ + + L S ++ E + + +D + E+P +++ ++L + V + Sbjct: 148 KMVSEASAVGLISLNKKWYETDSYKDVREIDILEDKKGEDPTRRIQKNDLMRLVTK---G 204 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 L E+L++ LYY EEL +KEIGA L++ ESRVSQ+HS + RL+++LG+ Sbjct: 205 LNRNERLIIILYYYEELTMKEIGATLDLSESRVSQMHSSIVSRLQSQLGR 254 >UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A8S2D4_9CLOT Length = 406 Score = 234 bits (599), Expect = 1e-60, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 104/236 (44%), Gaps = 11/236 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + V L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 163 SEGDVEAGRKLVEANLRLVVSIAKRYTGR---GMSFLDLVQEGNLGLMKAVEKFDYAKGY 219 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +TYA ++ ++ L + +P + ++ +A L +LGR + EVAE Sbjct: 220 RLSTYATWWVKQSITRSLADQSRTIRLPVHMVEAVNKIRRAQRSLSVKLGREPSMEEVAE 279 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + + +++ + ++ EE + + V DD + + LR+ + Sbjct: 280 EVNMSGKRVAELIQASGDTVSLETPVGDEEGSNLGDFVADDANA-STEDKAESFLLREEI 338 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++ L RE+ V+ L + L L+E+G V R+ Q+ + A+++LR Sbjct: 339 DSMLQGLNPREREVIILRFGLETGHPLTLEEVGKRFNVTRERIRQIETAALRKLRN 394 >UniRef50_B1I5J3 RNA polymerase sigma factor n=3 Tax=Peptococcaceae RepID=B1I5J3_DESAP Length = 257 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 94/229 (41%), Positives = 143/229 (62%), Gaps = 3/229 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L ++PLVR A RL VR P+ + +DL G GL+ AVE+YD GT F T+A Sbjct: 18 REQLIVEHLPLVRLIAGRLAVRPPSFIAQEDLEGWGIFGLIEAVEKYDPNHGTDFRTFAY 77 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+LDE+R + W+PRS+ +E+ +A +LE+E G + T+ EVA LG+ ++ Sbjct: 78 HRIRGAILDEVRRQSWLPRSLWHKLQEINEARARLERETGASVTDAEVAASLGMTDLEFH 137 Query: 133 QMLLDTNNSQLFSYDEWREE-HGDSIEL--VTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 ++ + + S D+ R +G+++ + +D +PL+Q+L+ Q ++ AI L Sbjct: 138 RLANHFRSVSVMSLDDVRTTRNGEAVPWGSLIEDTGSPDPLEQVLEEEDHQTLVAAITQL 197 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E+++LVL LYYQE L LKE+G VLEV ESR QLH++AI RLR K+ + Sbjct: 198 EEKDRLVLALYYQEGLTLKELGRVLEVTESRACQLHARAIARLREKIAQ 246 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 117/231 (50%), Gaps = 13/231 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 + +L + LV A + R + + DL+Q G IGL+ A+E++D +G F+TYA Sbjct: 291 ARDTLVTSNLRLVFSVAKKYTNRP---LPILDLVQEGNIGLMRAIEKFDYRRGWKFSTYA 347 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 + I+ ++ + +P + A ++ + +L ELGR + E+A+ L ID+ Sbjct: 348 IWWIKQSISRSIADHGRTIRLPVHLHEKAAKIDRTAARLRAELGRPPSPPELAQALDIDV 407 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 +++ + + S D E GD + +D + +P+ + L+ V +A+ Sbjct: 408 RQVERLMNMSR--ETVSLDLPVGEDGDVRFGDLVEDEKAPDPVGLADLAKLKDAVSDAVG 465 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 LPERE+ ++ + + +++ L+EIG + RV Q+ S+AI+RLR+ Sbjct: 466 DLPEREQTIIRMRFGIGYADQMTLEEIGQHFRISRERVRQVESKAIQRLRS 516 >UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=Q0RDY7_FRAAA Length = 373 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 13/240 (5%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 L +G K L + LV A + R + L DL+Q G +GL+ AVE++D Sbjct: 127 GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGR---GMTLLDLVQEGNLGLIRAVEKFDYA 183 Query: 63 QGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETE 119 +G F+TYA IR A+ L + +P V ++ + QL LGR T+ E Sbjct: 184 KGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEE 243 Query: 120 VAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNL 178 +A L + I ++ ++ S + + GDS + +D +P + Sbjct: 244 LALELDMPIEQVVELRRYAQDT--VSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAM 301 Query: 179 RQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + + L RE+ V+ L + ++ L E+G L + R+ Q+ ++ LR Sbjct: 302 QDEIENVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRK 361 >UniRef50_B8KP63 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KP63_9GAMM Length = 243 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 107/235 (45%), Positives = 150/235 (63%), Gaps = 7/235 (2%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 S Y V +L + Y+PLV+ LRL +LPA +ELDDL+Q G IGLL A E YDA Sbjct: 12 SAYAEPVVSSADALVREYLPLVKKIGLRLAAKLPAEIELDDLMQVGLIGLLRARESYDAA 71 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 QG +F+TYA RI+GAMLDE+RS DW+PRSV+ R+V++AI + + LGR A + E+A Sbjct: 72 QGASFSTYAGIRIKGAMLDEIRSHDWLPRSVQSQLRQVSEAIDRADARLGRPANDAEIAG 131 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 L + + +Y+Q+ +++ + DS+E T PL ++ + R+ + Sbjct: 132 ELDMPLDEYQQLSGQLACARMTHIE-------DSVEAETAVLNTHTPLDEVGEEGFREAL 184 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 E++ LPE+E+L+++LYY E LNLKEIGAVL V ESRVSQLH QA+ RLR L Sbjct: 185 AESVTQLPEKERLMMSLYYSEGLNLKEIGAVLGVSESRVSQLHGQALARLRVTLA 239 >UniRef50_A4J745 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J745_DESRM Length = 251 Score = 234 bits (597), Expect = 2e-60, Method: Composition-based stats. Identities = 94/237 (39%), Positives = 141/237 (59%), Gaps = 3/237 (1%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 T + + ++PLV+H A R+ V+LP+ + +DL G IGL+ A+++YD G Sbjct: 12 TLRDPEARQKIILLHLPLVKHLAGRVAVKLPSFILREDLESYGVIGLMEALDKYDPAMGH 71 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 +F +YA RIRGAMLDE+R ++W+PR+ + + + +LE+E G T +A+ +G Sbjct: 72 SFDSYAYHRIRGAMLDEVRRQNWLPRTAWQKNQLLKNTRERLEREQGEVITNEVLAKEMG 131 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE---LVTDDHQRENPLQQLLDSNLRQRV 182 I + + RQ++ + N + S DE H S + +D +PL + + ++ + Sbjct: 132 IPVEEVRQLIFNANKMYIQSLDEEVAGHDGSQMSKLELLEDTNSPDPLSIVEEKESKRLL 191 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 EAIETL EREKL+L LYY E L LKEIG VLEV ESRV QLHSQ +KRL+ L + Sbjct: 192 AEAIETLSEREKLILALYYSEGLTLKEIGQVLEVSESRVCQLHSQVMKRLKKTLESM 248 >UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomycetales RepID=Q2J784_FRASC Length = 422 Score = 233 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 13/240 (5%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 L +G K L + LV A + R + L DL+Q G +GL+ AVE++D Sbjct: 176 GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGR---GMTLLDLVQEGNLGLIRAVEKFDYA 232 Query: 63 QGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETE 119 +G F+TYA IR A+ L + +P V ++ + QL LGR T+ E Sbjct: 233 KGYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEE 292 Query: 120 VAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNL 178 +A L + I ++ ++ S + + GDS + +D +P + Sbjct: 293 LALELDMPIEQVVELRRYAQDT--VSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAM 350 Query: 179 RQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + + L RE+ V+ L + ++ L E+G L + R+ Q+ ++ LR Sbjct: 351 QDEIENVLGGLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRK 410 >UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM97_9FIRM Length = 394 Score = 233 bits (595), Expect = 4e-60, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 13/222 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K + + LV A + R + DL+Q G +GLL AV+++D +G F+TYA Sbjct: 161 AKKEMANANLRLVVSIAKKYPGR---GMPFLDLIQEGNMGLLKAVDKFDYTKGYKFSTYA 217 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + VP + ++ + QE GR AT E+A+ + + Sbjct: 218 TWWIRQAITRSIADQARTIRVPVHMVETINKMNRVGRHFLQEHGREATNEELAKEMETSV 277 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 R+ + S + E DS + +D + +P + + R+++ + +E Sbjct: 278 EKIREAKKAAQDP--ISLETPIGEKEDSHLGDFIEDQKTASPEDEAAATMRREQIHQLLE 335 Query: 188 TLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLH 225 TL EREK V+ L Y + L+E+G V R+ Q+ Sbjct: 336 TLTEREKGVIALRYGIDDGTQRTLEEVGKYFGVTRERIRQIE 377 >UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacteria RepID=RPOD_STRAU Length = 317 Score = 233 bits (594), Expect = 5e-60, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 13/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G M K L + + LV A R R + + DL+Q G +GL+ AVE++D +G F+ Sbjct: 77 GRMAKRRLIESNLRLVVSVAKRYVGR---GLTMLDLVQEGNLGLIRAVEKFDYARGYKFS 133 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR AM L + VP V V + ++ QE G T EVA L Sbjct: 134 TYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLE 193 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + ++L + S E D ++ + +D +P++ + + Sbjct: 194 LTPERVLEVLRLAQ--EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCEHLEA 251 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + TL ERE+ V+ L Y L+EIG + V R+ Q+ S+ + +LR Sbjct: 252 VLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDH 306 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 233 bits (594), Expect = 5e-60, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 11/234 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + K + + + LV A + + + DL+Q G +GL+ A E++D +G F Sbjct: 127 GDLDAKQKMVESNLRLVVSIAKNYRNQ---GLPFLDLIQEGTLGLVRAAEKFDYRKGFKF 183 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ L + +P V ++ +A +L ELGR T E+A+ Sbjct: 184 STYATWWIRQAIARALADKARTIRIPVHVVEKLNKIGRAERKLVTELGREPTAEEIADVT 243 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 GID + + EE + + + D + E+P ++ + ++ + E Sbjct: 244 GIDPEEVDSIKRSAQAPVSLEKPVGDEEESEFGQFIA-DERAESPYERAAEILTKEALRE 302 Query: 185 AIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 A+E L RE+ VL L Y L E+G V R+ Q+ +Q++K+L++ Sbjct: 303 ALENLSYRERRVLELRYGLGGEHPRTLDEVGRTFNVTRERIRQIENQSLKKLQS 356 >UniRef50_C1F998 RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F998_ACIC5 Length = 336 Score = 233 bits (594), Expect = 5e-60, Method: Composition-based stats. Identities = 98/227 (43%), Positives = 141/227 (62%), Gaps = 1/227 (0%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 ++ ++P VR+ A R+ RLP VELDDL+ AG +GLL+A+ ++D + F +YA Sbjct: 76 EQEQQLMEHLPTVRYLARRIHERLPHHVELDDLVSAGVVGLLDAMRKFDPAKKVQFRSYA 135 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRGA+LD LR DW PR +RR R V +AI + LGR E+EVA +G+ + +Y Sbjct: 136 QFRIRGAILDSLRMLDWSPRELRRKGRAVEEAIRAVTARLGRAPQESEVAGEMGLPLHEY 195 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIEL-VTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 +Q+L + ++ + R E EL + ++PL + L +R+R+M AI+ LP Sbjct: 196 QQLLGELKGLEIGTLHVERSEDSGEEELAFLPNDPEDDPLFRCLKGEMRERLMAAIDALP 255 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 ERE+LV+TLYY EE+ +KEIG L V ESRVSQ+HS A+ LR LG Sbjct: 256 ERERLVMTLYYYEEMTMKEIGLTLGVVESRVSQMHSSAVLHLRALLG 302 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 232 bits (593), Expect = 7e-60, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 13/238 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y K L + LV A + + R + DL+Q G GL+ AV++++ +G Sbjct: 285 YRENYDAAKRVLSAGNLRLVVSIAKKYRNR---GLSFLDLIQEGNTGLMRAVDKFEYARG 341 Query: 65 TAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR A+ + + VP + +V QL QELGR T EVA Sbjct: 342 YKFSTYATWWIRQAITRAIADQSRTIRVPVHMIDTMSKVRAVTRQLVQELGREPTPEEVA 401 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQ 180 G+ + D R +L Q S D+ +H DS DH+ E+PL L+ Sbjct: 402 RVAGLTLDDARCVLKMAR--QPLSLDQPVGDHDDSYFGEFLADHREEDPLYDTHQQALKH 459 Query: 181 RVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++ EA++ L RE+ +L L Y L+E+G + V RV Q+ ++A+++L+ Sbjct: 460 QIEEAMQGLNYREREILRLRYGLTDGYAYTLEEVGKIFSVTRERVRQIETKAVRKLQQ 517 >UniRef50_Q0EZ50 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ50_9PROT Length = 243 Score = 232 bits (592), Expect = 8e-60, Method: Composition-based stats. Identities = 94/242 (38%), Positives = 142/242 (58%), Gaps = 6/242 (2%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 MN++ L + Y+PLVR+ A +L R P S+E DDL+ AG +GLL+ +R+D Sbjct: 1 MNTMPNYSITPTPDELLEEYLPLVRYHADQLMRRTPDSIEFDDLINAGVLGLLDGAQRFD 60 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 + F T+ R+RGAM+D LR+ DW+PR +R +A+E+ A QLEQ GR A ETE+ Sbjct: 61 HSRDVQFKTFVSYRVRGAMIDYLRAFDWMPRGLRDHAKEMQTAFQQLEQVYGRPAEETEI 120 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWR-----EEHGDSIELVTDDHQRENPLQQLLD 175 A+ L I + +YR L + + + +D+ ++ +E + D + P Q Sbjct: 121 AKHLNISLDEYRTRLTNVRSMSIIHFDDLPVNNDFDDEISILETLAGDP-ADTPEAQNSL 179 Query: 176 SNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 Q++ + I LP RE++++TLYY EEL +KEI +L + ESRVSQLHSQ + RLR Sbjct: 180 MQFVQQLADGISRLPAREQVLVTLYYYEELTMKEIALILGLTESRVSQLHSQMVVRLRGL 239 Query: 236 LG 237 +G Sbjct: 240 MG 241 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 12/236 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y+ + K ++ + + LV A R + + L DL+Q G +GL+ AV R+D +G Sbjct: 204 YSRSIEVAKDTMIRANLRLVVSIAKRYMHQ---GLTLADLIQEGNLGLMRAVFRFDYTKG 260 Query: 65 TAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR A+ + + +P + +A L +ELGR T E++ Sbjct: 261 NKFSTYASWWIRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGREPTPLEIS 320 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 + + + +L + + S + + ++ ++ + ++P + + + L R Sbjct: 321 KTTNLPMDKILSILEASR--EPISLETPVGDDDSTLGDFLENQESQSPYEAVQNRELSGR 378 Query: 182 VMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 V E + TL +RE+ ++ L + E L+EIG V R+ Q+ +A+ RLR Sbjct: 379 VTEILSTLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNRLR 434 >UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsia RepID=Q2GE94_NEOSM Length = 620 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 30/250 (12%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 KH + + + LV A + R + DL+Q G IGL+ AV+++D +G F+TYA Sbjct: 361 AKHRMVEANLRLVISIAKKYTNR---GMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTYA 417 Query: 72 VQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 R A+ + + P + A +V + +L GR T E+A L I Sbjct: 418 TWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKISP 477 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 ++ L + + + S +D + + +L NLR+ + EA+ Sbjct: 478 DKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVLDEALAM 537 Query: 189 LPEREKLVLTLYY------------------------QEELNLKEIGAVLEVGESRVSQL 224 L RE+ +L + L L+++G + V R+ Q+ Sbjct: 538 LSPREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTRERIRQI 597 Query: 225 HSQAIKRLRT 234 S++++++R+ Sbjct: 598 ESKSLRKMRS 607 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 231 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 15/231 (6%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 + ++ + + LV A + + + + L DL+Q G IGL+ AV+R++ +G F+TYA Sbjct: 390 ARRAMIEANLRLVVSVAKKY---VQSGMPLLDLVQEGNIGLMKAVDRFEYRRGFKFSTYA 446 Query: 72 VQRIRG----AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 IR A+ D R+ VP + V + G++ QE GR A +E+A RLG+ Sbjct: 447 TWWIRQSVSRAIADYGRTI-RVPVHMADAMHRVKRVAGEMRQETGRPARSSELAARLGMS 505 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 R + T Q S D E D ++ + +D PL LL ++LR + A+ Sbjct: 506 EEKVRSVQRVTR--QPVSLDVPIGEEADTTLGEMVEDSSTLAPLDALLQADLRVAIDAAL 563 Query: 187 ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L RE V+ L + E L+E+G +V RV Q+ ++A+++LR Sbjct: 564 GVLTPREAKVIKLRFGVDAVSEHTLEELGDQFDVTRERVRQIQNKALQKLR 614 >UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria RepID=Q1J156_DEIGD Length = 532 Score = 231 bits (590), Expect = 1e-59, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 11/235 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G + L + + LV A + R + DL+Q G GL+ AVE+++ + Sbjct: 287 EDGAAARQGLIEANLRLVVSIAKKYTGR---GLGFLDLIQEGNQGLIRAVEKFEYRRRYK 343 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL+QEL R T E+AE Sbjct: 344 FSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREPTYEEIAEA 403 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQRV 182 +G + + + + S + + DS D ++P+ + L + + Sbjct: 404 MGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVDNAAKTLLSEEL 463 Query: 183 MEAIETLPEREKLVLTLY----YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +A+ L ERE LVL E L+E+G V R+ Q+ ++A+++L+ Sbjct: 464 EKALSKLTEREALVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLK 518 >UniRef50_D2SFP2 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SFP2_9ACTO Length = 360 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 9/229 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L + ++PLVRH A R R DDLLQ G +GL+ A++R+D +G F ++AV Sbjct: 137 REVLVEEHLPLVRHFARRFSNR---GEPFDDLLQVGTLGLIAAIDRFDPTRGVEFLSFAV 193 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R + W VPR ++ + A+G+L Q+ GR T +E+AE LGI A Sbjct: 194 PTITGEIKRHFRDQGWSVRVPRRLQELHLSLNAAVGELAQKNGRAPTPSELAEHLGIPRA 253 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + + L N + S DE DS L + ++ L+ + R+ + + T+ Sbjct: 254 EVLEGLAVANAYRSSSLDERLSGEDDSPTLAATLGEEDSALEGV---EYRESLQPLLATI 310 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 P RE+ +L L + + +I A + + + VS+L SQ + +LR L K Sbjct: 311 PARERRILILRFFGNMTQSQIAADIGISQMHVSRLLSQTLAKLREGLLK 359 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 231 bits (589), Expect = 2e-59, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 117/236 (49%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 AE K L + + LV A + R + L DL+Q G IGL+ A ++++ +G Sbjct: 274 AEAERAKKDLVEANLRLVVSVAKKYVNR---GLHLLDLIQEGNIGLMRAADKFEYRRGYK 330 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + + + +A +LE+ELGR T E+ R Sbjct: 331 FSTYATWWIRQAITRAIADQSRTIRIPVHMNESMNKFLRATRELEKELGRTPTNDEIGRR 390 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I + ++ L T + S + G+S + + +D +P+ +++SN+R Sbjct: 391 MDIPVEKVQK--LKTISRDPVSLETPVGRDGESALGDLIEDRWVGSPVDAVIESNVRDET 448 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++TL +E+ V+ + + E L+EIG +V R+ Q+ ++A+++LR Sbjct: 449 AGILKTLSPKEEKVIRMRFGIGCEREHTLEEIGQEFDVTRERIRQIEAKALRQLRA 504 >UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JLG8_SYNJB Length = 320 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 12/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A G K L + + LV A + R V DL+Q G IGL+ A E+++ +G Sbjct: 73 AAGERAKRELVRANLRLVVSIAKKYLNR---GVPFLDLIQEGTIGLIRAAEKFEYERGYK 129 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR + + ++ +P + +V + +L + L R T+ E+AE Sbjct: 130 FSTYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQVKRIRRELTETLNRRPTQAEIAEA 189 Query: 124 LGIDIADYRQM--LLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 L I + LL+ L + +E + + +D P Q+ L + Sbjct: 190 LEISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELMQLIEDANSLTPESQMDLHLLSAQ 249 Query: 182 VMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + E +E L RE+ +L L Y + L EIG + + RV Q+ ++A+++LR Sbjct: 250 LEEMLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLFGLSRERVRQIQARAMRKLR 305 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 11/233 (4%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + L Q + LV A + + + DL+Q G IGL+ AVE++D +G F+ Sbjct: 151 GNEGRRKLTQANLRLVVSVAKKY---IGNHMSFMDLIQEGNIGLMRAVEKFDYRKGNRFS 207 Query: 69 TYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + ++ + QLEQ L R AT E+A+ LG Sbjct: 208 TYATWWIRQAVTRAIAEQSRTIRLPVHLSESIAQMRRVAYQLEQALQREATPDELADALG 267 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + + ++ML + +E G E + DD E PL+Q L+ + +A Sbjct: 268 VSLRKVKRMLNASVQPVSLEQPIGKEGQGRVGEFLADDTD-EAPLEQATRMMLQDELADA 326 Query: 186 IETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + LP+RE+ +L L Y + L+E+GA + R Q+ ++A++ LR Sbjct: 327 LSQLPDRERQILLLRYGLADGKRRTLEEVGAEFGITRERTRQIEAEAMRHLRQ 379 >UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci RepID=C1CW22_DEIDV Length = 547 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 11/235 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G + L + + LV A + R + DL+Q G GL+ AVE+++ + Sbjct: 302 EDGANARQGLIEANLRLVVSIAKKYTGR---GLGFLDLIQEGNQGLIRAVEKFEYRRRYK 358 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL+QEL R AT E+AE Sbjct: 359 FSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREATHEEIAEA 418 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQRV 182 +G + + + + S + + DS D ++P++ + L + + Sbjct: 419 MGPGWDAAKVEEVQKVSQEPVSLETPIGDEKDSFYGDFIPDENLDSPVENAAKTLLSEEL 478 Query: 183 MEAIETLPEREKLVLTLY----YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +A+ L ERE +VL E L+E+G V R+ Q+ ++A+++L+ Sbjct: 479 EKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLK 533 >UniRef50_A9IKM0 RNA polymerase sigma factor n=9 Tax=Betaproteobacteria RepID=A9IKM0_BORPD Length = 246 Score = 230 bits (587), Expect = 4e-59, Method: Composition-based stats. Identities = 116/222 (52%), Positives = 147/222 (66%), Gaps = 3/222 (1%) Query: 19 RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGA 78 RY PLVR AL+L RLPASV+LDDL+QAG IGLL+A RY F TYA RIRGA Sbjct: 10 RYAPLVRKLALQLLARLPASVQLDDLIQAGMIGLLDAARRYQETPDAQFETYATARIRGA 69 Query: 79 MLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDT 138 MLDELRS+DW+PRSVR + + AI + E EL R +E+E+A+ L + + +Y+ ML D Sbjct: 70 MLDELRSQDWLPRSVRSKGKRIEAAIQRKEHELMRPPSESEIADELELPLDEYQAMLNDA 129 Query: 139 NNSQLFSYDEWREEHGDSIE--LVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLV 196 Q+ YD+ D V D +PL LL +LR+ ++ AIETLPEREKLV Sbjct: 130 RGIQILHYDDIGSNDPDERGWRDVPADSGG-DPLDALLTGDLRRALVNAIETLPEREKLV 188 Query: 197 LTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 L+L Y++ LNLKEIGAVLEV E+RV QL SQA R+R +L + Sbjct: 189 LSLCYEQGLNLKEIGAVLEVTEARVCQLRSQATARIRARLKE 230 >UniRef50_B2V6T3 RNA polymerase sigma factor n=6 Tax=Aquificales RepID=B2V6T3_SULSY Length = 242 Score = 229 bits (585), Expect = 6e-59, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 134/231 (58%), Gaps = 4/231 (1%) Query: 12 DKHSLWQRYVPLVRHEALRLQVR-LPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 +K ++ + ++P + + L+ + LP V+ +DL Q G +GL +A+E++D +G F+TY Sbjct: 7 EKTNIIKEFLPKINYIVKALKHQNLPPIVDEEDLFQVGVLGLYDALEKFDPAKGVKFSTY 66 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 A R+RG +LD LR DW+PR++R + + I +LE +LGR A E+AE LG+ + + Sbjct: 67 AEIRVRGYILDHLRQLDWIPRNIRNKVKNLENKIVELETKLGREAKPEEIAEYLGMSLEE 126 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTD--DHQRENPLQQLLDSNLRQRVMEAI-E 187 Y N L S D + D + + + P + + + L++ + + I Sbjct: 127 YMIYAEKAVNKILISLDSDVSKDDDESLHLWEVISTNDDTPEKYVEEKQLKEILSDIIMN 186 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 L EREKL++TLYY E+LN+KEI +L ESRVSQLH++ + ++R + K Sbjct: 187 KLDEREKLIVTLYYYEDLNMKEIAEILGCTESRVSQLHTKIMLKIRKLIEK 237 >UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VBD5_9ACTO Length = 424 Score = 229 bits (585), Expect = 6e-59, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 103/239 (43%), Gaps = 13/239 (5%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 L +G K L + LV A + R + L DL+Q G +GL+ AVE++D + Sbjct: 179 LLVRDGEAAKQQLVSANLRLVVSVAKKYSGR---GMTLLDLVQEGNLGLIRAVEKFDYAK 235 Query: 64 GTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 G F+TYA IR A+ L + +P V ++ + QL LGR T+ E+ Sbjct: 236 GYKFSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEEL 295 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLR 179 A L + + ++ ++ S + + GDS + +D +P ++ Sbjct: 296 ALELDMPLEQVVELRRYAQDT--VSLETTVGDDGDSVLGDFIEDSDATSPADAASYGAMQ 353 Query: 180 QRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + L RE+ V+ L + ++ L E+G L + R+ Q+ ++ LR Sbjct: 354 DEIDHVLGNLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRK 412 >UniRef50_UPI0000E0E61A flagellar biosynthesis sigma factor n=2 Tax=Proteobacteria RepID=UPI0000E0E61A Length = 243 Score = 229 bits (585), Expect = 6e-59, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 147/226 (65%), Gaps = 6/226 (2%) Query: 14 HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQ 73 L +++ LV+ A L RLP ++ +DDL+QAG +GLL A + +++ +G +F T+A Sbjct: 15 EELVEKHTILVKRIAHHLLARLPPNILVDDLIQAGMLGLLEAAKNFNSTKGASFETFAGI 74 Query: 74 RIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQ 133 RIRG+MLD++R DW PRSV +N+R + QAI +E E+ +A ++++A+RLGI++ Y + Sbjct: 75 RIRGSMLDDIRKGDWTPRSVHKNSRAITQAISSVENEMNSDAKDSDIAKRLGIELPQYHK 134 Query: 134 MLLDTNNSQLFSYDEWREEHGDSIELVT--DDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 ML + N +L E+ G S +++ D P +L+ ++ + +AI +LPE Sbjct: 135 MLNEVNIGKLV----GIEDLGISEDVIATPDFKSTNTPYDELVHGCFQKALAKAIVSLPE 190 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 RE +VL+LYY E+L+L+EIG L V ESRVSQ+HSQA +L+ KL Sbjct: 191 REAIVLSLYYDEDLSLREIGQALNVSESRVSQIHSQAKSKLKIKLS 236 >UniRef50_B9L5B4 RNA polymerase sigma-D factor (Sigma-28) n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L5B4_THERP Length = 262 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 1/226 (0%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L ++Y PLV++ RL++ LP SVE DDL+ G IGLL A++R+D +G F TYA Sbjct: 25 RAQLVEQYAPLVKYVVDRLRLSLPPSVERDDLIGYGTIGLLEALDRFDDTRGVKFETYAA 84 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+LD LR+ D VPRS R AR++ QA + E GR +E E+A+ LG+ + + Sbjct: 85 MRIRGAILDALRTLDIVPRSARSRARQIEQATREFFAEYGRMPSENELADHLGMTTTELQ 144 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 Q + D + ++E D P + + +L+QR+ A+ TL ER Sbjct: 145 QAISDAACL-FLPLQASEDPDTLTLEEQLADPNALEPGEVAAEEDLKQRIAAALATLSER 203 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++L+++LYY E+L ++EI +L + ESRVSQ+ ++ +LR L + Sbjct: 204 DRLIVSLYYYEDLTMREISQLLGISESRVSQILNRVRLQLRALLRE 249 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 15/236 (6%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G K + + LV A R R V L DL+Q G IGL+ VE++DA +G F Sbjct: 348 DGRKAKERMVTANLRLVVSIAKRYSNR---GVALQDLIQEGSIGLIRGVEKFDAERGFRF 404 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR ++ + +P V + + L+ ELGR +E E+ E + Sbjct: 405 STYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICESV 464 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDD--HQRENPLQQLLDSNLRQRV 182 GID A YR ++ + N + S + GD + + + E + LR+ + Sbjct: 465 GIDRAKYRLVMECSRN--IVSLETPLRS-GDDVHFLGESLIAPEERAEENCSRDTLRESI 521 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + L RE+ V+ + + L+E+G+ V R+ Q+ S+A+K+LRT Sbjct: 522 EKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRT 577 >UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML80_9BACT Length = 414 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 12/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L Q + LV A R R + DL+Q G IGL+ A ER+ +G F+TYA Sbjct: 179 AKEGLVQHNLRLVVDIAKRFTGR---GMGFLDLIQEGNIGLMRAAERFQYRKGFKFSTYA 235 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 +R +L + + VP + + + +L Q+LGR + E+A L + Sbjct: 236 TWWVRQGILRAVADQSRTIRVPVHTTEAWQRMIKISHRLAQKLGREPSNEEIALALAVKP 295 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + + S+D+ + + D P + L + +R ++ + Sbjct: 296 ERVQHTTQAF--LEPISFDQPNADGETFLGDCLPDDHASPPDEHLQEEQMRSQLHRLLRV 353 Query: 189 LPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 L RE+ V+ L + + L+E+G +L V R+ Q+ A+K+LR Sbjct: 354 LTPREEQVIRLRFGIGNGQSRTLEEVGKLLNVTRERIRQIEVLAMKKLRE 403 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 13/237 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + L + + LV A + + + + L DL+Q G IGL+ AVERYD G Sbjct: 119 ERAKAAREKLIRHNLRLVVSIAKKYRT---SGLPLIDLIQEGNIGLMTAVERYDPELGYR 175 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + ++ VP + +V + QLEQ GR AT+ E+A+ Sbjct: 176 FSTYATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQA 235 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L +D+ Q + + S D+ E G+S I + D + + Q + S +R ++ Sbjct: 236 LDLDVERIEQA--RSAIPRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQI 293 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 ++E+L ERE+ VLTL + + L EI + RV Q+ +A+ +LR Sbjct: 294 RRSLESLSERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLRNS 350 >UniRef50_Q1IR61 RNA polymerase sigma factor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR61_ACIBL Length = 262 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 98/232 (42%), Positives = 140/232 (60%), Gaps = 3/232 (1%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A G + L + V++ A R+ RLP V ++DL+ AG +GL++A +YD+ + Sbjct: 12 ATGWEHRDRLVMEQMSQVKYIARRIHERLPRHVPIEDLINAGILGLIDAAGKYDSEKNVQ 71 Query: 67 FTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 F +YA RIRGA+LD LR DW PR +RR AR + A +L E G E E+A LG+ Sbjct: 72 FQSYAKFRIRGAILDSLRDLDWSPRDLRRKARALEAAELRLTSETGHPPLEDELARELGM 131 Query: 127 DIADYRQMLLDTNNSQLFSYDE--WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 D+ +R++ + + S E E G+ E+V + H+ E+PL L S + ++E Sbjct: 132 DLDGFRELTRELEGLGISSLQEGLPAEGFGEEREVVVESHE-ESPLDAFLRSENHELLVE 190 Query: 185 AIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 AIE LP RE+ VL LYY EEL +KE+G VL VGESRVSQ+HSQA+ R+R +L Sbjct: 191 AIEQLPARERQVLALYYFEELTMKEVGDVLGVGESRVSQIHSQALTRVRARL 242 >UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma RepID=B1AIY8_UREP2 Length = 448 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 23/241 (9%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K+ L+ + LV A + R ++L+DL+Q G GLL A++++D +G F+TYA Sbjct: 194 KNQLYTSNMRLVTSIAKKYLNR---GLDLEDLIQEGSSGLLKAIDKFDHEKGHKFSTYAT 250 Query: 73 QRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG-IDI 128 IR ++ + + +P + ++ +A L QELGR+ T E+A+ + + Sbjct: 251 WWIRQSITRAIADQARQIRIPVHMVETINKLTKAERNLIQELGRDPTAEEIAQAMNKVSQ 310 Query: 129 ADYRQMLLDTN---------NSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNL 178 A ++ L T N S D+ +S D + +P + L Sbjct: 311 AKNQKEQLITAQKVVEIKKLNVDPVSLDKQIGHDEESQFSDFISDDEIISPEKYTEKKAL 370 Query: 179 RQRVMEAIET-LPEREKLVLTLYYQ-----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 ++ E E L + E+ V+ + Y L+E+G L V R Q+ S+AI++L Sbjct: 371 NDQINEMFEKVLNDNEQRVIKMRYGLLPFERPYTLEEVGEYLGVTRERARQIESKAIRKL 430 Query: 233 R 233 + Sbjct: 431 K 431 >UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacteria RepID=RPOD_TREPA Length = 611 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 11/229 (4%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + LV A + R + DL+Q G IGL+ AVE+++ +G F+TYA Sbjct: 373 AKDKLINANLRLVVSIAKKYTNR---GLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYA 429 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + VP + +V + QL Q+ GR ++ E+A++L + Sbjct: 430 TWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTV 489 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 +Q+ EE S+ D ENP + L++ V + Sbjct: 490 EKVKQVKSVAREPISLETPIGEEEDS-SLGDFVPDADVENPSRVTERVLLKEEVRSILSA 548 Query: 189 LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 LP RE VL + + + L+E+G +V R+ Q+ ++A+KRLR Sbjct: 549 LPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLR 597 >UniRef50_Q8EQV7 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis RepID=Q8EQV7_OCEIH Length = 258 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 131/238 (55%), Gaps = 4/238 (1%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + L Y+ LV + R+ LP +V DD+ G +GL +A++++D + Sbjct: 18 NHQDGEAANQLINNYMYLVNYHTERIASHLPNNVVKDDIRSFGILGLYDALKKFDPSRDL 77 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA RI+G+++D LR DW+PRS+R ++V QA+ + EQ R A +E+A G Sbjct: 78 KFDTYASFRIKGSIMDGLRKEDWLPRSIREKTKKVEQAMEEYEQSYQREANSSEIANLTG 137 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD----SIELVTDDHQRENPLQQLLDSNLRQR 181 + + + D S + S +E + + D I D + P +++ L++ Sbjct: 138 MTTEEVETTMKDALFSNILSIEEKPKGNSDQLKEGIGYSISDERAILPENHIVNEELKEE 197 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +++ I+ L E+E+LV++L+Y EEL EIG V+ + SR+SQ+H ++I +L+ L K+ Sbjct: 198 LIQGIKLLNEKEQLVVSLFYNEELTFTEIGQVVGLTTSRISQIHKRSIFKLKKTLEKV 255 >UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasmataceae RepID=B1VAH4_PHYAS Length = 476 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 14/237 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + K L + LV A R R V DL+Q G +GL+ AV+++D +G Sbjct: 231 QANQAKDVLVESNYRLVVSIAKRYIGR---GVLFLDLIQEGNMGLMRAVDKFDYQKGLRL 287 Query: 68 TTYAVQR----IRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 +TYA + A+ D+ R+ +P + +++ +L QEL + T E+AE+ Sbjct: 288 STYATYWVIQGVTRAIADQARTI-RIPVHIVETINKMSLCTRKLTQELKKKPTIEELAEK 346 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + I R + E S+ D +P + ++ ++ + Sbjct: 347 MNIPADKLRSIQYIEKKPISLEVPPAENKEDETSLGDFISDPNVLSPHEYMMKEVTQKLL 406 Query: 183 MEAIE-TLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 E +E TL ERE+ VL + Y + L+EIG + V R+ Q+ S+A++RLRT Sbjct: 407 DEVLENTLTEREEKVLKMRYGFLDGKVYTLEEIGNLFGVTRERIRQIESKALRRLRT 463 >UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G031_9DELT Length = 431 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 12/236 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K+ + + LV A R + L DL+Q G IGL+ AV+R+D +G F+TY Sbjct: 197 AKNKFVKANLRLVVSIARRFNH---GRMPLQDLIQEGNIGLMKAVDRFDYRKGFRFSTYG 253 Query: 72 VQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + +V +A +LE +LGR T E+A+ GI + Sbjct: 254 SWWIRHAISRAIADKGRQVRLPVHMIDAYHKVNKARRELEAKLGREPTREELAQHTGIAL 313 Query: 129 ADYRQMLLDTNNSQLFSYDEWREE-HGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 A +M + S D+ + G + +D E+P + L L ++V + Sbjct: 314 AKIERMGTMLVD-NPISLDKPVSDADGRKMGDFLEDENAEDPGEGLEADALNEQVKRLVS 372 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 L E ++ + EEL LKEIG + R+ QL QA+ ++R +L +L Sbjct: 373 KLRPIEADIIRKRFGLIDDEELTLKEIGGQYSLSRERIRQLQEQALGKIRRELKRL 428 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 14/242 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + + + LV A+ + + L DL+ G IGL+ AVER+D +G Sbjct: 77 RKGDKAARDHMIKANLRLVVKIAMDYKD---FGLPLLDLISEGNIGLIKAVERFDPRKGG 133 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +TYA I+ ++ L ++ +P + ++ + L +ELGR T+ E+A Sbjct: 134 KLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISKMRRTAMALTEELGREPTDEELAI 193 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS--IELVTDDHQRENPLQQLLDSNLRQ 180 L I + L + + + S D E GDS + D +P + L + NL Sbjct: 194 ELQIPTSKVAH--LKSVSVRPASLDAPVGEEGDSATFGEIVGDDNAVSPFEGLREKNLNS 251 Query: 181 RVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + + +L ERE ++ L + +EL L+E+G V R+ QL A+ ++R + Sbjct: 252 DLHAMVASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIRQLEYLALSKMRKAM 311 Query: 237 GK 238 K Sbjct: 312 AK 313 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 12/235 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + K + + + LV A R R V DL+Q G +GL A E++D +G F Sbjct: 136 QGRVAKRKMIRSNLRLVVSIAKRYLNR---GVPFLDLIQEGAMGLNRATEKFDPDKGYKF 192 Query: 68 TTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + +P + ++ +A +L+Q+L RN TE E+AE L Sbjct: 193 STYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMAEAL 252 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 I + RQ+ + ++ +EE + ++L+ +D +P ++ ++ +RQ + E Sbjct: 253 DISVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLL-EDEDNLSPEAKMNENMMRQEIWE 311 Query: 185 AI-ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + L REK V++L Y E L+E+G + + RV Q+ S+A+++LR Sbjct: 312 VLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRR 366 >UniRef50_Q254D7 DNA-directed RNA polymerase sigma 28 n=12 Tax=Chlamydiaceae RepID=Q254D7_CHLFF Length = 257 Score = 226 bits (578), Expect = 4e-58, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 131/242 (54%), Gaps = 6/242 (2%) Query: 4 LYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 LY ++ + +L Y+ LV+ RL +P+ ++ +DL +G GL+ AVER++ Sbjct: 15 LYWETQKIEYRDTLIDLYLHLVKCVVHRLISGMPSHIKTEDLYASGVEGLVRAVERFNPE 74 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 + F YA+ I+ A++D+LR +DWVPRSV + A +++ A+ L Q LGR T+ ++ E Sbjct: 75 KSRRFEGYALFLIKAAIIDDLRKQDWVPRSVHQKANKLSDAMDTLRQSLGREPTDGDLCE 134 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWR-----EEHGDSIELVTDDHQRENPLQQLLDSN 177 I + + + + S +E R E G ++E D + E + Sbjct: 135 YFQISQQELSGWFVSARPALIISLNEERPLLSDGESGVALEERIPDERAETGYDIVDRKE 194 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + AIE L E+E+ V+ LYY EEL LKEIG +L V ESRVSQ+HS+A+ +LR L Sbjct: 195 FSSFLANAIEGLEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSKALIKLRASLS 254 Query: 238 KL 239 Sbjct: 255 AF 256 >UniRef50_A0Z394 RNA polymerase sigma factor n=2 Tax=unclassified Gammaproteobacteria RepID=A0Z394_9GAMM Length = 237 Score = 226 bits (578), Expect = 4e-58, Method: Composition-based stats. Identities = 107/229 (46%), Positives = 149/229 (65%), Gaps = 11/229 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 G +L + ++PLV+ A +L VRLPA +E+DDL+Q G IGLL A + + A G F Sbjct: 16 GGASQGDALVRAHLPLVKRIAQQLLVRLPAHIEMDDLIQVGLIGLLKASDDHQADSGAQF 75 Query: 68 TTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 +TYA RIRGAMLDELRSRDW+PRSV+R+ VA AI + EQ +GR AT+ E+A++L +D Sbjct: 76 STYAAIRIRGAMLDELRSRDWLPRSVQRDLGRVAAAIERAEQRVGRPATDQEIADQLEMD 135 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 + Y+Q+ + +++ +E + + + + DS R+ V+EAI Sbjct: 136 LDSYQQLSGELACARIGQLEE-----------LDVPTEVDATTSIVFDSARREAVVEAIG 184 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LPE+E L+L+LYY E LNLKEIG VL V ESRVSQ+H QA+ RLR+KL Sbjct: 185 RLPEKEGLMLSLYYTEGLNLKEIGMVLNVSESRVSQIHGQAVARLRSKL 233 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 226 bits (578), Expect = 4e-58, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 14/241 (5%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 N LY +G + K + + + LV A R R V DL+Q G +GL A E++D Sbjct: 144 NRLY--QGRVAKRKMIRSNLRLVVSIAKRYLNR---GVPFLDLIQEGAMGLNRATEKFDP 198 Query: 62 LQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ + +P + ++ +A +L+Q+ RN +E Sbjct: 199 DKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEA 258 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNL 178 E+AE L I + RQ+ + ++ +EE + ++L+ +D +P ++ ++ + Sbjct: 259 EMAEALEISVPQLRQLQQLRRQALSLNHRVGKEEDTELMDLL-EDEDNLSPEAKMNENMM 317 Query: 179 RQRVMEAI-ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 RQ + E + + L REK V++L Y E L+E+G + + RV Q+ S+A+++LR Sbjct: 318 RQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLR 377 Query: 234 T 234 Sbjct: 378 R 378 >UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptosporangineae RepID=D2AWC8_STRRD Length = 452 Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 13/236 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 +G K + + + LV A + R + L D++Q G +GL+ AVE++D +G Sbjct: 209 AEDGRRAKDHMLEANLRLVVSVAKKYTDR---GMALLDVVQEGNLGLIRAVEKFDYTKGY 265 Query: 66 AFTTYAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA+ IR A+ +P V ++++ + Q LGR T E+A Sbjct: 266 KFSTYAMWWIRQAIQRGFADSARTIRLPVHVLEMLSKLSRVERDMHQRLGREPTPEELAV 325 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQR 181 L ++L + Q S + E G+ +I + +D + + L ++ Sbjct: 326 ELDKTPDQIEELLR--TSRQPISLNATIGEDGETTIGDLIEDVDSPEASEVVDRQLLGEQ 383 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + L RE ++ L + + L EIG L + R+ QL +++ +LR Sbjct: 384 LRGVLGNLSPREAKIMALRFGLVDGKPHTLDEIGKHLGLTRERIRQLEKESLSKLR 439 >UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobacteria RepID=RPSC_ANASP Length = 416 Score = 226 bits (576), Expect = 7e-58, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 12/237 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 ++G+ K + + + LV A + Q R +EL DL+Q G +GL AVE++D +G Sbjct: 170 MQSQGLQSKEHMIKANLRLVVSVAKKYQNR---GLELLDLVQEGTLGLERAVEKFDPTKG 226 Query: 65 TAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR + + + +P + ++ +A ++ QE GR T ++A Sbjct: 227 YRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLA 286 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 L + R++LL S +++ + EL+ D P + L+ +L++ Sbjct: 287 IELDMTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLETDG--VTPEEMLMRESLQRD 344 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + L RE+ V+ + + +L EIG L++ RV Q+ S+A+++LR Sbjct: 345 LQHLLADLTSRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQ 401 >UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia sp. CCGE1002 RepID=D1TN62_9BURK Length = 663 Score = 225 bits (575), Expect = 8e-58, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 109/231 (47%), Gaps = 13/231 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + K + + + LV A + R + DL+Q G IGL+ AV++++ +G F+T Sbjct: 423 LQAKREMIEANLRLVISIAKKYVNR---GMHFLDLIQEGNIGLMKAVDKFEYRRGWKFST 479 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA +R A+ L + +P + + ++ + ++ Q+ GR A +A+R+ + Sbjct: 480 YATWWVRQAVTRSLADQARTIRIPVHMMESINKLNRISREILQQTGREAHPAVLAQRMEV 539 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 R ML Q S + + D ++ V +D +P + +NLR + A Sbjct: 540 PEEKVRAMLKI--GRQPLSLETPVGDEADTTLSDVIEDPMATSPADAAVQANLRAAINTA 597 Query: 186 IETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRL 232 ++ L RE VL + + + L+E+G ++ R+ Q+ S+A+++L Sbjct: 598 LDALSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIESKAMRKL 648 >UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=Q7NB90_MYCGA Length = 644 Score = 225 bits (575), Expect = 8e-58, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 18/234 (7%) Query: 14 HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQ 73 + L + LV A + R ++ DL+Q G IGL+ A+ +++ G F+TYA Sbjct: 397 NQLVTSNLRLVTSIAKKYLNR---GLDFVDLIQEGSIGLMKAISKFNYKLGNKFSTYATW 453 Query: 74 RIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL-----G 125 IR A+ + + +P + ++ + L Q+LGR+ T E+ E + G Sbjct: 454 WIRQAITRAIADQARTVRIPVHMVETINKLIKTERMLTQQLGRDPTLEELTEAMGGQVNG 513 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + +E ++ V D P + + + + E Sbjct: 514 FTPKKVADIKKLNQEPVSLDKPIGHDEESQFVDFV-KDRDILKPDEYTEKLIVTEHINEL 572 Query: 186 -IETLPEREKLVLTLYYQ-----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 I TL ++E+ ++ + Y +++ L+E+G V R+ Q+ S+A+++L+ Sbjct: 573 FINTLTKKEEQIIRMRYGLHPWHQQMTLEEVGQKFNVTRERIRQIESKALRKLK 626 >UniRef50_B0P9X1 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P9X1_9FIRM Length = 257 Score = 225 bits (575), Expect = 9e-58, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 137/237 (57%), Gaps = 2/237 (0%) Query: 4 LYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 LY G + ++ + Y + + A+ + +++++ G I L+++V+R+D Sbjct: 17 LYKETGSQELRNRIVMHYSYIAKSVAIEMNNMFHKYATIEEMVNQGVIALIDSVDRFDPD 76 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 G F+TYA +++GA++D +R +DW+PR VR NA V A L +LGRN T +E+A+ Sbjct: 77 HGVKFSTYAFTKVKGAIIDYVRKQDWLPRRVRHNAIRVNNAYNDLPMKLGRNPTRSEMAK 136 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTD-DHQRENPLQQLLDSNLRQR 181 +L + ++ Q + + + +FSY+ + + ++ + + NP + LR++ Sbjct: 137 QLDMSEREFDQCIYEMSGESIFSYESLLADGPQNQNMLWPMEGEIVNPEGCVDAKELREQ 196 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + AI++L E+E+ VL+LYY E L +KEIG VL V E R+ Q++ + I++LR KL + Sbjct: 197 LGMAIDSLNEQERHVLSLYYYENLTMKEIGGVLGVSEQRIGQINRKLIQKLRNKLEQ 253 >UniRef50_C2KYZ5 RNA polymerase sigma factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYZ5_9FIRM Length = 259 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 138/237 (58%), Gaps = 1/237 (0%) Query: 3 SLYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 +LY G + K L RYV +VR A +++ ++ DD++ G I ++ A+ERYD Sbjct: 19 ALYKETGSQEVKQELTMRYVYIVRSIAYQMREMYHDFMQTDDIVNEGVIEIMRAIERYDE 78 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 + F T+ +RIRG ++D +R DW+PR+ +++R + A +L LGR T+ E+A Sbjct: 79 SKDNKFETFISRRIRGMVIDMMRKNDWLPRNFHKDSRSIETATVELNNRLGRAPTDEELA 138 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 + L +++ +++ +N + S D +E +++ + + P + + Sbjct: 139 DYLNMNVKKLQKIQRMSNMVNVLSLDMTYDEGNETLLQIPSEDHSTQPEFSFMQKENVRA 198 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + EAIE+L E+EKLV++LYY EELN+ +I V+EV + RVSQLHS AI++LR +G+ Sbjct: 199 LTEAIESLQEKEKLVISLYYVEELNMNQIAEVMEVSQPRVSQLHSIAIRKLRKYMGE 255 >UniRef50_A3EPQ0 RNA polymerase sigma factor n=4 Tax=Leptospirillum RepID=A3EPQ0_9BACT Length = 251 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 138/229 (60%), Gaps = 4/229 (1%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 +D+ +L + + V+ ALR RLP +++DDL+ AG GLL+A R+D +G F T Sbjct: 5 LDEDTL-KEFAVTVKFFALRYSHRLPPELDVDDLISAGMGGLLDAARRFDPSRGIKFKTL 63 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 A RIRGAMLDE+R+ DW+PRSVR V Q +L R T E+A R+ + + Sbjct: 64 AEHRIRGAMLDEIRAADWMPRSVREKLTHVQQVKTELIARYKREPTRQEIAARMDMTEEE 123 Query: 131 YRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRE--NPLQQLLDSNLRQRVMEAIE 187 + ++ +D L S ++ + E GDS L+ + +PL LL S + +++ +A++ Sbjct: 124 FDRLSVDIEPHHLVSLEDLMDPEDGDSPSLLDRLSAPQEGDPLASLLQSEVSEKLCQALD 183 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 LPE+++LVL+LYY EEL +KE+ V+ V ESRVSQ+H QA+ L+ L Sbjct: 184 RLPEKQRLVLSLYYYEELTMKEVARVVGVSESRVSQIHGQALAALKQSL 232 >UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3J9H0_NITOC Length = 579 Score = 224 bits (573), Expect = 1e-57, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 11/234 (4%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + K + + + LV A + + R + DL+Q G IGL+ AV+++D +G F Sbjct: 337 QAQRAKAQMVEANLRLVVSVAKKYRNR---GLTFLDLIQEGNIGLMKAVDKFDYHRGYKF 393 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P V ++ +A QL QE GR E+AERL Sbjct: 394 STYAHWWIRQAITRAIDDQSRTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERL 453 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + +M ++E EL+ +D Q NP++ + + L+ + Sbjct: 454 ALSEQQIHRMHEIAKQPISLETPLGKDEDSQLGELM-EDEQVPNPMEVAITAGLQTGAQQ 512 Query: 185 AIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + L RE V+ + + + L E+ ++ R+ Q+ +QA+ +LR Sbjct: 513 LLAALSPREAQVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRR 566 >UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHQ6_9BACT Length = 322 Score = 224 bits (573), Expect = 1e-57, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 107/233 (45%), Gaps = 10/233 (4%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K ++ + + LV A + R + L DL++ G IGLL AVE++D +G F+TYA Sbjct: 83 SKETMIKCNLRLVVSIAKKYINR---GMNLVDLVEEGNIGLLKAVEKFDYTKGFKFSTYA 139 Query: 72 VQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + +P + N +V + +L+Q+LGR T E++ + + Sbjct: 140 TWWIRQAIERAIINQCRMVRIPVHMSENISKVMKTQNELQQKLGREPTIHELSTACKMPL 199 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + +++ +E E + DD + +P ++ +++ ++ + + + Sbjct: 200 STLKKVFDAIKQDTSLDMPVGGDESSTLHEFIADDEKYLDPYLKIENTSKKEIIFKWLTF 259 Query: 189 LPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 L + EK ++ Y + L+ IG L + RV Q+ + + ++R L Sbjct: 260 LSDNEKTIIIRRYGLTGNDPETLESIGNDLGITRERVRQIEKRVLSKMRNLLA 312 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 13/237 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + LV A R R + L DL+Q G IGL+ AVE++D +G Sbjct: 96 KEGDTEALQRFVRSNLRLVVSIAKRYVGR---GLSLLDLIQEGNIGLMRAVEKFDWRRGY 152 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P + + + QL QELGR T E+AE Sbjct: 153 RFSTYATWWIRQAITRAIADQGRTIRLPVHMTDSITRYHRTTTQLAQELGRQPTPEEIAE 212 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQR 181 + + Q++ + S D+ E + S+ + D ++P + +S +R+ Sbjct: 213 AMSVQPEKIAQIVRAAQRA--VSLDQPLSEEDETSLGDLIADELAQSPEELAEESLMRRD 270 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + E +E L RE+LVL L Y E L E+G +L + RV Q+ ++A+++LR Sbjct: 271 IAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRKLRR 327 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 11/236 (4%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + + L + + V A + + + + DL+Q G IGL+ AVE++D G FT Sbjct: 184 GTLARDRLVRANLRWVVAVAKKYHKQRGT-MSMQDLIQEGNIGLIRAVEKFDPRMGYRFT 242 Query: 69 TYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + +P + +A L + LGR TE E+AE +G Sbjct: 243 TYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVG 302 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTD--DHQRENPLQQLLDSNLRQRVM 183 +D + R+ + S D E + + D + E P + +R+ V Sbjct: 303 LDPSRMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSENEGPADRAERELMRESVA 362 Query: 184 EAIET-LPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + L ERE +VL + + E L ++G L V RV Q+ +A+++LR Sbjct: 363 RTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEMKALRKLRR 418 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 12/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K + + + LV A R + R + DDL+Q G +GLL AV R+D +G F+TYA Sbjct: 197 AKQEMVKANLRLVLSIAKRYRGR---GMSFDDLIQEGNLGLLKAVGRFDHTKGNRFSTYA 253 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 +R +++ + + +P + +L +ELGR + E+AER + + Sbjct: 254 TWWVRQSIIRGIYDKTRTIRLPVHFIELKNLFFKVFYELLKELGREPSPQEIAERAKLPL 313 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + +L T +Q S + E + +D + +P+++ D L + + + Sbjct: 314 DKVQMVL--TLAAQPISLETPIGEDEQRLGDFIEDERAASPMEECSDRELAEITRSLLSS 371 Query: 189 LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 L RE+ +L L + + L++IG +V + R+ Q+ +A+++LR Sbjct: 372 LQPREEKILRLRFGIDGQPAETLEKIGKTFKVSKERIRQIEKKALRKLRN 421 >UniRef50_Q3A5E9 RNA polymerase sigma factor n=4 Tax=Deltaproteobacteria RepID=Q3A5E9_PELCD Length = 255 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 137/236 (58%), Gaps = 2/236 (0%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y +K L + ++ +V A R+ ++PA + +D+ A +GL++A R+ G Sbjct: 7 YAPIRADEKDRLIKSHLHMVSFLAERMVSQVPAFMTREDISSAAMVGLVDAANRFKPSMG 66 Query: 65 TAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 F T+A +R+RGA+LDE+R DW RS+R+ +A+ + LE+ LGR E E+A L Sbjct: 67 VLFKTFAEKRMRGAVLDEVRRMDWFSRSLRQKQSRIAKTMEALEKRLGRPPEEHEMAAEL 126 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREE--HGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 +D+ YRQ L + + S E E+ G ++ +D + ++ L +S L Q + Sbjct: 127 EMDLESYRQALGEVSYLGCVSLHETIEDTPDGPTMLDNIEDQNSPSAVEMLENSELTQEL 186 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 I+ L ++E+LV++LYY EEL+ KEI VLE+ E RVSQLHSQA+ +L+T + + Sbjct: 187 ARQIDRLTDKERLVVSLYYYEELSQKEIAEVLELSEGRVSQLHSQALIKLKTSIKR 242 >UniRef50_C0JS04 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=C0JS04_STRLU Length = 336 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 10/233 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 T E + +L + +PLVR+ A R + R + ++D++Q G IGL+NA++R+D +G Sbjct: 106 TPEHQHVRGALIEANLPLVRYAAARFRSR---NEPMEDVVQVGTIGLINAIDRFDPDRGV 162 Query: 66 AFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F T+A+ + G + R VPR + +V A L GR+ T E+AE Sbjct: 163 QFPTFAMPTVVGEIKRYFRDNVRTVHVPRRLHELWVQVNGATEDLTTAHGRSPTTAEIAE 222 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 RL I + + + S + +E GD + + D E+P L R V Sbjct: 223 RLKIGEDEVLACIEAGRSYHATSLEAAQE--GDGLPGLLDRLGYEDP--ALAGVEHRDLV 278 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + LPERE+ +L L Y L +I L V + VS+L +++ RLR+ Sbjct: 279 RHLLVQLPEREQRILMLRYYSNLTQSQISQELGVSQMHVSRLLARSFARLRSA 331 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 13/236 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + L + + LV A R + + + L DL+Q G IGL+ AVERYD G F Sbjct: 95 KGQEAREKLIRHNLRLVVSIAKRYRS---SELPLIDLIQEGNIGLMTAVERYDPELGYRF 151 Query: 68 TTYAVQRIRGAMLDE---LRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ L VP + ++ +A Q+EQ+ GR AT E+AE L Sbjct: 152 STYATFWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAELL 211 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVM 183 GID+A Q T + S D+ E G+ SI + D + ++ +++ L + +R+++ Sbjct: 212 GIDVARIEQA--RTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQIR 269 Query: 184 EAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 ++E L ERE+ VL + + + L EI L++ RV Q+ +A+++LR Sbjct: 270 RSLEQLTERERTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLRNS 325 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 113/238 (47%), Gaps = 10/238 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 AEG + + L + + LV A + R + L DL+Q G IGL+ AVE++ +G Sbjct: 250 AEGDIARKRLIEANLRLVVSIAKKYTGR---GITLLDLIQEGNIGLIKAVEKFRHQKGYK 306 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++AQA +L QELGR TE E+A Sbjct: 307 FSTYATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRRLTQELGREPTEQEIANY 366 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 LGI + R++ + EE S+ DH+ P+ S LR ++ Sbjct: 367 LGIPVEKIREVQKISQEPISLENPVGEEED-TSLGDFIQDHKAPAPMDAASQSLLRDQID 425 Query: 184 EAIETLPEREKLVLTLYYQ---EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + ++ L ERE+ VL + + E +E+ +L V ++V Q S+ + + +L Sbjct: 426 QVLKHLSERERGVLLMRFGLDCEPRPYREVAHILAVSPNQVMQAESRVLDMVAARLSP 483 Score = 73.9 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 174 LDSNLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAI 229 +D LR+ + + +P E+ ++ + + L+E+G V R+ Q+ S+A+ Sbjct: 520 IDQKLREALASVMLHVPAPERDMMRFRFGLDIGQPRTLEEVGRAFGVTRERIRQIESKAL 579 Query: 230 KRLRT 234 ++LR Sbjct: 580 RKLRR 584 >UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyanobacteria RepID=RPOD4_SYNE7 Length = 311 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 10/239 (4%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 N G K + + + LV A + Q + +EL DL+Q G +GL AVE++D Sbjct: 64 NQAVLQAGQRAKTKMLKANLRLVVSVAKKYQNQ---GLELLDLIQEGSLGLERAVEKFDP 120 Query: 62 LQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 G F+TYA IR +M + +P V + + +L +L R + Sbjct: 121 ALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRA 180 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNL 178 E+AE L + + D +L + ++ + + D + P+ + Sbjct: 181 EIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQ 240 Query: 179 RQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +++ + L ERE+ VL L + E+ L EIG L V R+ Q+ ++A+++LR Sbjct: 241 HEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLR 299 >UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SG50_RHOSR Length = 520 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 13/235 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G K + + LV A R Q R ++L DL+Q G +GL+ AVE++D G F Sbjct: 279 DGQHAKRRFLEANLRLVVSIARRYQGR---GLDLLDLVQEGNLGLIRAVEKFDYKTGFKF 335 Query: 68 TTYAVQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ L + V P + ++ + +L +E GR T +E+A L Sbjct: 336 STYATWWIRQAITRALADQSRVIRIPVHMVEQIDQLGKERARLTKETGREPTPSELATAL 395 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 I L+ + ++ S D + DD + + + Sbjct: 396 DTTIEHIGD--LEKYDQRVLSLDVLTDNAEHDGLDFEDDLAVV-AEEVAERRRFYETLES 452 Query: 185 AIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + L ER+ V+ L Y + L EIG + V R+ Q+ S+ +K ++ + Sbjct: 453 VLSPLSERDAQVIRLRYGLTGSDPYTLDEIGKIYGVTRERIRQIESKLLKAMKEE 507 >UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESS1_SORC5 Length = 715 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 12/233 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K+ + + LV A R + L DL+Q G IGL+ AVER+D +G F+TYA Sbjct: 484 AKNRFVKANLRLVVSIARRYNR---GRLPLIDLIQEGNIGLMKAVERFDHSRGYRFSTYA 540 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ L + +P + VA+A + G T E+ + G+ Sbjct: 541 SWWIRHAISRALADKGRAVRIPVHMLDTYNRVARATQAIIARTGHEPTIEELEKETGVPR 600 Query: 129 ADYRQMLLDTNNSQLFSYDEWR-EEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 ++ D FS D +E G + +P L + V + Sbjct: 601 EKLDKV-KDFYAETPFSLDRPVGDEDGRKFIDFLQEENALSPFDHLANRKWSDEVRRLLT 659 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 TL E ++ + +EL LKEIG + R+ QL QA+ ++R ++ Sbjct: 660 TLTPIESRIIRWRFGLDDEDELTLKEIGDKYNLSRERIRQLQEQALGKIRKQM 712 >UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteria RepID=B8HRG7_CYAP4 Length = 455 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 116/236 (49%), Gaps = 12/236 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 EGV K + Q + LV A + Q R +EL DL+Q G +GL AVE++D +G Sbjct: 210 QKEGVRAKEHMIQANLRLVVSVAKKYQNR---GLELLDLIQEGTLGLERAVEKFDPTKGY 266 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR + + ++ +P + ++ +A ++ QE G + ++A Sbjct: 267 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIAT 326 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 L + + R++L+ S +++ + +L+ D +P + ++ +L + + Sbjct: 327 ELEMTVPQVRELLVRVPRSVSLETKVGKDKDTELGDLLETDD--LSPEEMMMRESLHREL 384 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + L RE+ V+++ + +L +IG L++ RV Q+ ++A+++LR Sbjct: 385 EKLLADLTSRERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKLRQ 440 >UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8E5_COPPD Length = 360 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 12/233 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 + L +R + LV A + + + +L+Q G IGL+ AVE++D +G F+ Sbjct: 117 DAAAREELIKRNLRLVISIAKKYTNK---GLSFMELIQEGNIGLIKAVEKFDWRKGYKFS 173 Query: 69 TYAVQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA I+ A+ L + + P + + + + +L +LGR T E+AE LG Sbjct: 174 TYATWWIKQAITRALADQSRLIRRPVHMVEAYHQFQKKLNELYNQLGREPTVQELAEALG 233 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVME 184 L +N + S D + DS ++ D + + R+ + E Sbjct: 234 FSEDKVL-ALKQMSNPEPQSLDATIGDQDDSRVQDFVPDTGEGAADKYFWEEERRRVLEE 292 Query: 185 AIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL +RE+ ++ + Y E L+E+GA + RV Q+ ++A+++LR Sbjct: 293 VLSTLNKREREIIEMRYGLVDGVEHTLEEVGASFNITRERVRQIETKALRKLR 345 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 222 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 12/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + + + LV A + Q R ++E DL+Q G +GL VE++D +G Sbjct: 87 EQGNRAKRKMIEANLRLVVAIAKKYQKR---NMEFLDLIQEGSLGLERGVEKFDPTKGYK 143 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + +P + ++ + +L Q+LGR+AT E+A Sbjct: 144 FSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAV 203 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L I+ + R+ L + + EL+ D +P Q + LRQ + Sbjct: 204 LEIEPSQIRECLSMARQPISLDVRVGDNQDTELSELLEDHEA--SPDQYITQELLRQDLK 261 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 +E L +++ VL L + +EL+L +IG L + RV QL QA+ +LR + Sbjct: 262 NLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRRR 317 >UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCN6_9BACT Length = 377 Score = 222 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 14/241 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 A + + + + LV A + + + DL+ G IGL+ AVER+D +G Sbjct: 107 QAGEKEARDLMIKSNLRLVVKIAHDYKD---FGLPVLDLISEGNIGLVKAVERFDPDKGG 163 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +TYA I+ ++ L ++ +P + + + L +ELGR T+ E+AE Sbjct: 164 KLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISRMRKMALMLTEELGREPTDQELAE 223 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIEL--VTDDHQRENPLQQLLDSNLRQ 180 L + + L + + + S + E G+S E + D P + L + +LR Sbjct: 224 MLEMPVNKVSH--LKSVSVRPTSLNAPVGEDGNSTEFGEIVGDDNAPTPYENLHEKSLRG 281 Query: 181 RVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + E I+ L +RE ++ L + L L+E+G V ++ RV QL + A+ ++R + Sbjct: 282 DLHEMIDGLEDREAEIIRLRFGLNGDSPLTLEEVGQVFDITRERVRQLQNIALSKMRKIM 341 Query: 237 G 237 Sbjct: 342 A 342 >UniRef50_B9CP17 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CP17_9ACTN Length = 276 Score = 222 bits (568), Expect = 6e-57, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 10/239 (4%) Query: 3 SLYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 + Y + + L ++ LVR A + + R LDDL+Q G IGL+ A++R+D Sbjct: 36 AQYQETHDSEVRDQLIVSHLNLVRFLASKFKNR---GEPLDDLIQVGTIGLIKAIDRFDP 92 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G FTTYA I G + R + W VPR ++ + +V Q +L EL R+ + Sbjct: 93 SRGLEFTTYATPTIMGEIKRHFRDKGWSVRVPRRLQELSAKVNQITDELTTELQRSPSIE 152 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREE-HGDSIELVTDDHQRENPLQQLLDSN 177 E+A++LG+ + + + + + + GD + D + E+ + L S+ Sbjct: 153 EIAKKLGVSVDEVLEAMESSGAYSSVPLEGGGSSVDGDEAPSIIDQYITED--EALAGSD 210 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 R + +AI RE+ ++ + + E L EI L + + +VS+L + +KR++ K+ Sbjct: 211 DRIVLEDAIADFSPREQEIIRMRFVEGLTQVEIAEKLGISQVQVSRLLRRTLKRIQEKI 269 >UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C8_CYAPA Length = 427 Score = 222 bits (567), Expect = 7e-57, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 22/242 (9%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + L Q + V A + + ++ L DL+Q G IGL+ A ER+D +G F Sbjct: 174 KGRRARARLVQSNLRWVVSIAKKYANK--HTMPLQDLIQEGSIGLMKAAERFDLDKGFKF 231 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 TYA IR A+ L+ + +P V + + + QL LGR T E+A+ L Sbjct: 232 LTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEELADEL 291 Query: 125 GIDIADYRQMLLDTNNSQLF--------SYDEWREEHGDSIELVTDDHQRENPLQQLLDS 176 I ++ + + S + R GD IE + P +QL + Sbjct: 292 NIPVSRLAFITQAASLPISLESPISSETSSTKARNNLGDFIE-----SECLQPDEQLERT 346 Query: 177 NLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 LR+ + + TL RE+ ++ + Y L EIG ++ + R+ Q+ A+++L Sbjct: 347 MLREDLENVLATLKARERDIIRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQSAMRKL 406 Query: 233 RT 234 + Sbjct: 407 KA 408 >UniRef50_UPI0001C30F67 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30F67 Length = 262 Score = 222 bits (567), Expect = 7e-57, Method: Composition-based stats. Identities = 87/239 (36%), Positives = 131/239 (54%), Gaps = 6/239 (2%) Query: 5 YTAEGV-MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y G + L Y P+V++ A R+ R+PA V++ DL+ G GLL+AVER++ ++ Sbjct: 17 YKGTGERAARDDLVLAYSPIVKYVAGRVAARMPAHVDVADLISDGFKGLLDAVERFEPVR 76 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F YA RIRGA+ D LRS DWVPR+VR ARE+ +A +L L R T+ E+A Sbjct: 77 GVRFEAYADTRIRGAIFDGLRSLDWVPRAVRAEAREIERATAELAMRLQRMPTDPELAGA 136 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWRE---EHGDSIELVT--DDHQRENPLQQLLDSNL 178 L + L ++S++ + DE G + L+ D +P ++ Sbjct: 137 LSMSRRQLAASLQRVSDSRIVALDEPWGPVLADGRPVALLDTLPDLDAVDPAADSDETER 196 Query: 179 RQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 +R+ A+ LP RE++VL L Y +L L +IG VL + ESR SQLH++A +L+ L Sbjct: 197 SERIGAAVRQLPAREQVVLGLRYHHDLTLLQIGEVLGISESRTSQLHTKAALQLKAVLA 255 >UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2H3_ACIFD Length = 337 Score = 222 bits (567), Expect = 8e-57, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G K + Q + LV A R Q + + L DL+Q G +GL++AVE++D +G F Sbjct: 95 QGEEAKRAFIQANLRLVVSIAKRYQ---ASGLPLLDLIQEGNMGLIHAVEKFDWRKGFKF 151 Query: 68 TTYAVQRIRGAMLDELR---SRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + +P + V +A QLE LGR T E+A + Sbjct: 152 STYATWWIRQAITRGIANTGRTIRLPVHAGDSLSRVQRAQVQLEVRLGRAPTVRELAAEV 211 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + L ++ S E + GD + V +D Q P + L V Sbjct: 212 DLPYDKLVEALRF--RAEPVSLSEPLRDDGDAELGDVVEDSQSATPFDVAAEHLLPSEVS 269 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + L RE+ +L L Y E L+E+G + R+ Q+ ++A+ +LR Sbjct: 270 RLLAPLDGREREILRLRYGLDRGEPRTLEEVGEYFHLTRERIRQIEARAMSKLR 323 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 222 bits (567), Expect = 8e-57, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 123/243 (50%), Gaps = 15/243 (6%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 A + + L + LV A R R ++ DL+ G IGL+ AV+++D G Sbjct: 50 RAGDTLARQHLINSNLRLVIRTAKRYSNR---GLDFYDLINEGNIGLIQAVDKFDPELGY 106 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYAV I+ A+ + ++ VP V + RE ++A +L +E T +E+AE Sbjct: 107 RFSTYAVWWIQQAIDRAIMNQGRTIRVPVHVTKQIRECSKAAHELRKEGNHEPTSSEIAE 166 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS---IELVTDDHQRENPLQQLLDSNLR 179 R G + ++L + Q S D +E GD ++ + DD E P Q ++ NL Sbjct: 167 RTGRAPEEVSKLLK--LSEQSLSLDNGWDEEGDKKDHLQTIDDDDVFELPEQDIVTQNLN 224 Query: 180 QRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + +++ +++LP++++++L + + L+++G ++ V RV Q+ A++ LR K Sbjct: 225 KALIDLVDSLPDKQRVILHHRFGLLDDDPKTLEQVGEIVGVTRERVRQIQKSAMETLRDK 284 Query: 236 LGK 238 L + Sbjct: 285 LKR 287 >UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) n=3 Tax=Magnoliophyta RepID=D1J322_VITVI Length = 575 Score = 222 bits (566), Expect = 9e-57, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 11/237 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 T G+ K + + + LV A Q A + + DL+Q G GL+ E++DA +G Sbjct: 331 TNYGIRCKDKMIKSNIRLVISIAKNYQG---AGMNIQDLVQEGCRGLVRGAEKFDASKGF 387 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA I+ A+ L + +P + V +A QL E GR+ EVAE Sbjct: 388 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 447 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 G+ + +LL + ++ E++ D E + L+ +R+ + Sbjct: 448 ATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIA-DPDAETAEELLIKQFMREDL 506 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + + +L REK V+ Y E L+EIG ++ V R+ Q+ S A ++L+ K Sbjct: 507 EKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNK 563 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 222 bits (566), Expect = 9e-57, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 10/240 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + L ++ + LV A + + + +DL+Q G IGL+ AVE++D +G Sbjct: 61 KKGDRKARQKLIEKNLRLVVSVAKKYRGY---GLPFEDLIQEGNIGLMKAVEKFDPERGF 117 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + VP + R+V++ +L EL R T+ E+A Sbjct: 118 RFSTYATWWIRQAVQRAVADKGRTIRVPVHMTEKIRKVSRTFNELSLELEREPTDEEIAR 177 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 RL D+ D R + ++ EE + +D + + +L ++ Sbjct: 178 RLEWDVEDVRLTISAMPDATSLDQPVSSEESASELGDFIEDERTSDTPDTVLKELESSQL 237 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 EAIE LPER + VL Y E L E+G L++ RV QL +A + L+ + + Sbjct: 238 KEAIERLPERARYVLVRRYGLDDREPATLAELGDELKISRERVRQLQREAERLLKAGIRR 297 >UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus RepID=B8G577_CHLAD Length = 314 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A G + L + LV A R Q + L DL+Q G IGL+ AV+++DA +G Sbjct: 69 AAGEQARAQLINSNLRLVVSIARRYQGH---GLTLLDLIQEGSIGLMRAVDKFDAGRGLK 125 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR ++ + +P + +A+ +L Q+L R T E+A Sbjct: 126 FSTYATYWIRQSIGRAIADHSRTVRLPVHLGERLSRLARLRQELAQQLDREPTLEELANA 185 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEH-GDSIELVTDDHQRENPLQQLLDSNLRQRV 182 G+ + + + S DE E G ++ + D + P ++ + L+ V Sbjct: 186 AGLSVEQVERA--EQAGLAPTSLDEAHTEDGGGALSEILTDPLQPTPFDEVSEGMLQADV 243 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 A+ L RE+ +L L Y + L++IG L + RV QL +A+++LR Sbjct: 244 QAALSQLSPRERNILRLRYGLDGEPMHTLEQIGQRLRLTRERVRQLEYEALRKLRD 299 >UniRef50_A8F4U9 RNA polymerase, sigma 28 subunit, FliA/WhiG n=8 Tax=Thermotogaceae RepID=A8F4U9_THELT Length = 236 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 140/225 (62%), Gaps = 2/225 (0%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 ++ + + +P V+ A+ L LP +VE+DDL+Q G + LL+A+ RYD +G + ++ Sbjct: 5 NEEEIIKEMLPSVKRIAMDLLHTLPKNVEVDDLIQEGVLALLSAIRRYDPKKGVSMYSFV 64 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 V+RI+GAM D LR DW+PR++R+N +EV +AI +LE L ++ + E+A G+ + Sbjct: 65 VKRIKGAMYDYLRKIDWMPRNLRKNVKEVEKAIHELENHLNKHPSIEEIALHTGLSTNEV 124 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 ++ L +T QL DE+ E DS + + P + + ++V EAI TL + Sbjct: 125 KRALDETVRKQLLRLDEFIYEGLDSFSDII--KADDEPSENAFREIILEKVAEAIRTLSK 182 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 RE+LVL+L ++++L+LKEIG V+ V ESRVSQ+ S ++ +++ + Sbjct: 183 REQLVLSLRFEQDLSLKEIGTVIGVSESRVSQILSSSLIKIKRYI 227 >UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderia cepacia complex RepID=A4JT57_BURVG Length = 628 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 99/234 (42%), Gaps = 13/234 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + L+ + LV A R R + DL+Q G IGLL A++RYD +G F+T Sbjct: 389 QPARMGLFDANLRLVVSIAKRYPDR---GLPFADLIQEGNIGLLKAIDRYDHRRGFRFST 445 Query: 70 YAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ L VP ++ + + Q G AT E+A ++G Sbjct: 446 YATWWIRQAITHALADLGRTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHELAVQMGE 505 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + R ++ + S D G+ + V D +P + LR + Sbjct: 506 PLDKVRDLMSIVK--EPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRDTIAAM 563 Query: 186 IETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 I LP RE VL L Y E +L++IG L + RV Q+ + A+ RLR Sbjct: 564 IGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRAS 617 >UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogaceae RepID=A9BJC9_PETMO Length = 424 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 104/237 (43%), Gaps = 16/237 (6%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + L + + LV A R + DL+Q G IGL+ AV ++D +G F Sbjct: 178 GDKRAREELIKANLRLVISIAKRYVGH---GLGFLDLIQEGNIGLMKAVAKFDWKKGYKF 234 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TY+ IR A+ + + +P + + + + + QE G E++ + Sbjct: 235 STYSYWWIRQAITRAIADQGRTVRIPVHLVETINRMNRVVNKYIQENGEVPDLEELSVLM 294 Query: 125 GIDIADYRQMLLDTNNS----QLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 + +++L+ N S D E + ++ + D P ++ +RQ Sbjct: 295 DKPVDKMKEVLISAKNIFSLNAPISNDVDAEGESEVLDFI--DSDSPTPDEEGRKMIIRQ 352 Query: 181 RVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++ I+TL +E ++L + Y ++ L+E+G V R+ Q+ S++I++L+ Sbjct: 353 KMEMIIDTLSPKEAMILKMRYGFVDGKQKTLEEVGEFFNVTRERIRQIESKSIRKLK 409 >UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=7 Tax=Planctomycetaceae RepID=D2R6R0_9PLAN Length = 544 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 11/231 (4%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + LV A + + R + DL+Q G GL+ AV++Y+ +G F+T Sbjct: 301 EAAKRQLSSGNLRLVVSIAKKYRNR---GLSFLDLIQEGNTGLMRAVDKYEYRRGFKFST 357 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ +L QELGR T EV + + Sbjct: 358 YATWWIRQAITRAIADQARTIRIPVHMIDVLSKLRNVQKKLLQELGREPTTEEVTALVDL 417 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + + +++L + E E + +D +NP+ + LR+R+ + Sbjct: 418 PLEEVKRVLDIGRHPVSLDRPVGDSEDSSFGEFI-EDTASDNPVLCATNGILRERIDGLL 476 Query: 187 ETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +TL RE+ ++ L Y L+E+G + +V RV Q+ ++A+++L+ Sbjct: 477 KTLTWREREIIRLRYGLCDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQ 527 >UniRef50_Q01PP5 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PP5_SOLUE Length = 251 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 133/236 (56%), Gaps = 3/236 (1%) Query: 5 YTAEGVM---DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 Y+ G M ++ L ++P VR A R+Q RLP S+ LDDL+ G +GL++A++ +DA Sbjct: 4 YSVSGEMREDERERLILEHLPQVRLIARRIQERLPESISLDDLVSTGVLGLISAIDNFDA 63 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 TYA +IRGA+LD LR DW PR RR ++++ AI EQ L + E E+A Sbjct: 64 SHNVKLKTYAEYKIRGAILDSLRGLDWAPRQKRRKSKQIEAAIAVAEQRLHASPGEEEIA 123 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 LGI + +Y + L++ + S + E G + D P L S L + Sbjct: 124 GELGITVDEYHEWLVEIRGLNVASLEYAGNEQGRDLLHYIPDGSDNLPSTLLERSELERL 183 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + +I+ +P E+ VL+LY+ EEL L+EI V+ + ESR+SQL SQAI RLR ++ Sbjct: 184 LASSIDGIPAIERTVLSLYFHEELTLREIAQVVNLHESRISQLKSQAILRLRGQMA 239 >UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9H5_9FIRM Length = 347 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 14/238 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A K + + LV A R + + L DL+Q G IGL+ AV+++D +G Sbjct: 103 AGSQSAKDKMINSNLRLVVSVAKRYAA--GSGMALLDLIQEGNIGLMKAVDKFDYRRGYK 160 Query: 67 FTTYAVQRIRG----AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA+ IR A+ D+ R+ +P ++ +V+ A + +E GR E+AE Sbjct: 161 FSTYAMWWIRQSVTRAIADQARTI-RIPVHMKEKMGKVSGAARKFLEENGREPNADELAE 219 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIEL-VTDDHQRENPLQQLLDSNLRQR 181 + I +++ S S D E D++ + D Q L ++ Sbjct: 220 LMEISRDQMDEIMR--LYSDTVSLDSPVGEEEDAMLMNFVADESMPEQYQTAEQGILSEQ 277 Query: 182 VMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + E + L ERE+ +L L + L+E+G V R+ Q+ +A+++L+ K Sbjct: 278 INEILSELTEREQTILRLRFGFVENRIWTLEEVGREYHVTRERIRQIEGKALRKLKMK 335 >UniRef50_C9R9X4 RNA polymerase sigma factor n=1 Tax=Ammonifex degensii KC4 RepID=C9R9X4_AMMDK Length = 252 Score = 220 bits (562), Expect = 3e-56, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 133/236 (56%), Gaps = 2/236 (0%) Query: 5 YTAEG-VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y G K L +RY+PLV++ RL VRLP V L+D+ AG +GLL A+ERYD Q Sbjct: 10 YKQRGNTTSKEELVRRYLPLVKYLVGRLAVRLPPWVSLEDIEGAGILGLLAAMERYDPSQ 69 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F +YA RI GAMLDE+R R + + V + + E+E G +VA+ Sbjct: 70 GVEFESYARYRIWGAMLDEVRRWARFSRRTWQQMQAVLKVQERWEREKGCRPKVEDVAQE 129 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQRV 182 LG + A ++ FS +E R G S E D + ++PL++LL+ R+ Sbjct: 130 LGWEPAQVDRLGRYFAAFNSFSLEEVRSAEGRSPWEEFLADPKGQDPLEELLEKEDLGRL 189 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 EAI L ER +L+L LYYQE L L+EIG VL + ESRV QLHS+A+ +LR L + Sbjct: 190 AEAIGRLEERLQLILALYYQEGLTLREIGEVLGISESRVCQLHSRALTKLREILAE 245 >UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDN0_THET1 Length = 344 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 106/240 (44%), Gaps = 13/240 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 EG +H L + + LV A R + L DL++ G +GL+ A E++D +G Sbjct: 102 EEGKAARHKLIEHNLRLVVSIARRYVGH---GMPLADLIEEGNLGLMRAAEKFDWRRGFR 158 Query: 67 FTTYAVQRIRGAMLDELR---SRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L +P V ++ + +L ELGR T E+AE Sbjct: 159 FSTYATWWIRQAVTRGLAEGGRTIRLPVHVGEALTKIGRETQRLSLELGREPTNQELAEA 218 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 G+ + + S + E G++ + V +D + NP + L + + Sbjct: 219 TGLSPERIDEYKNASR--LPLSLEAPLGEDGETNLGEVLEDTEAANPEHIADHTMLGEDI 276 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 A+E L ER++ ++ + Y + + L+ G L V R Q+ +A+ RLR K Sbjct: 277 KRALERLNERQRAIIIMRYGLYGGQPMTLEAAGRKLGVTRERARQIEQEALNRLRQSDAK 336 >UniRef50_B5JK56 RNA polymerase sigma factor, FliA/WhiG family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JK56_9BACT Length = 269 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 15 SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQR 74 L++ Y+PLVR R+++ LP ++ DL G GL+ A+++YD Q +F +YA R Sbjct: 38 ELFETYMPLVRSIVARIKINLPPHIDEQDLHSVGITGLIAALKKYDPAQKKSFGSYAAMR 97 Query: 75 IRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQM 134 IRG++LDELR DW+PR+ R N +++ I ++EQ LGR ATE E+ LG++ +Y Q+ Sbjct: 98 IRGSILDELRRMDWMPRNARTNFKKLRATIEEVEQRLGRPATEEEIRAELGLNRKEYDQL 157 Query: 135 LLDTNNSQLFSYDE----WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 + +T D + G + V D ++ + + V E I LP Sbjct: 158 MAETRPVSFLPLDNAAAGGDDGEGADLYEVIPDDNVVPVTSKMEKDEVTRLVAERINQLP 217 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 E + VL +YY +++ L EI V + ESR+ Q+HSQAI LR+ + Sbjct: 218 ETPRKVLAMYYFQDMRLAEIAEVFGLTESRICQIHSQAIISLRSYI 263 >UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKU3_THEYD Length = 427 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 101/230 (43%), Gaps = 12/230 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K+ + + + LV A + R + L+DL+Q G IGL+ AVE+++ +G F+TY+ Sbjct: 189 AKNKMIESNLKLVVSIAKKYTGR---GLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTYS 245 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR ++ + +P V N ++ + +L Q E++ L I Sbjct: 246 TWWIRQSINRAIAEHSKTIRIPVHVIDNICKINKIYRELYQNSENEPDIEEISLNLNIPS 305 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 L + + S D + ++ +D NP ++ L +L+ + + Sbjct: 306 DKIADFL--AISKEPVSIDMSLRDDDSLLKEFIEDMNSPNPYEEALHDDLKHLIEKVFSL 363 Query: 189 LPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 L +REK +L Y + +L E+G V R+ Q+ +A+++L+ Sbjct: 364 LSKREKEILMRRYGINEEKPKSLDEVGKEFSVSRERIRQIELRAMRKLKR 413 >UniRef50_B1VUR9 RNA polymerase sigma factor n=10 Tax=Streptomyces RepID=B1VUR9_STRGG Length = 323 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 9/227 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 +++L + + LV+ A R + R S ++D++Q G IGL+ A++R++ +G F T+A+ Sbjct: 99 RNTLVELNLALVKFAAARFRSR---SEPMEDIVQVGTIGLIKAIDRFELSRGVEFPTFAM 155 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R W VPR ++ ++A+A +L Q+L R T E++ERLGI Sbjct: 156 PTIVGEIKRFFRDTSWSVRVPRRLQELRLDLAKAGDELSQQLDRAPTVAELSERLGISPE 215 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + + + +N S D EE L ++ L+ + + + I L Sbjct: 216 EVVEGMSASNAYTASSLDAKPEEDDGEGALADRIGYEDHSLEGI---EYVESLKPLIAAL 272 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 P R++++L+L + + EIG L + + VS+L S+ + +LR L Sbjct: 273 PARDRMILSLRFVSNMTQSEIGEELNISQMHVSRLLSRTLTKLRKGL 319 >UniRef50_C0GLF1 RNA polymerase sigma factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GLF1_9DELT Length = 261 Score = 219 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 DK+ + + Y +R A RL+ +LPA V+++DL+ AG +GL+ A+ +D QG T Sbjct: 33 AADKNEIVRAYGQKIRITAARLKHKLPAHVDVNDLISAGSLGLIEALGNFDPTQGIKLET 92 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 +A RI+GAMLDELR DW R +R+ +++ Q++ + EQ G + + +E+ E G Sbjct: 93 FADNRIKGAMLDELRRMDWFSRGLRKKVKKLEQSMREFEQNTGHSPSHSELKEITGYSRE 152 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + + LL N S + +E T + P ++ +L +V IE L Sbjct: 153 EVEEGLLALQNQICLSLEAIQENFS-----ATGTQDSDEPQLSVVFHDLVDKVAAIIEKL 207 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +E+LVL+LYY EEL +KE+ VL+V E RVSQLHSQAIK+++ + Sbjct: 208 SNKEQLVLSLYYTEELTMKEVAQVLDVTEGRVSQLHSQAIKKVKDNFAQ 256 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 219 bits (559), Expect = 6e-56, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 13/229 (5%) Query: 14 HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQ 73 + LV A R R + L DL+Q G IGL+ AV+++D +G F+TYA Sbjct: 126 QRFVLANLRLVVSIAKRYVGR---GLPLLDLIQEGNIGLMRAVQKFDWRKGHRFSTYATW 182 Query: 74 RIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 IR A+ + + +P + + + QL Q + R T E+AE+ G Sbjct: 183 WIRQAITRAIGDKSREIRLPAHINEELNRINRIRQQLSQTVNREPTPEEIAEKAGTSPER 242 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET-L 189 R++L E E V D R NP ++ D L+ + ++ L Sbjct: 243 VRELLGYLQQPVSLDTPVGEEADSTLGEFVPD--VRANPEEEATDEVLKTEMDRVLDEVL 300 Query: 190 PEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 REK VL L Y +L+++G L V RV QL QA+++LR Sbjct: 301 TPREKRVLQLRYGLGDGHTYSLEKVGRELGVTRERVRQLEKQALEKLRR 349 >UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycetales RepID=A6CE36_9PLAN Length = 588 Score = 219 bits (559), Expect = 7e-56, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 105/231 (45%), Gaps = 11/231 (4%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K L + LV A + + R + DL+Q G GL+ VE+Y+ +G F+TYA Sbjct: 320 AKQQLSGGNLRLVVSIAKKYRNR---GLSFLDLIQEGNAGLMRGVEKYEYRRGYKFSTYA 376 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + +P + ++ + Q+ QE GR T E+A+ +G+ + Sbjct: 377 TWWIRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETGREPTMEELADSVGLGV 436 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + +++ + E + + D H+ +P + L+ ++ +++ Sbjct: 437 EETERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHES-SPADAAMREMLKDKIEHVLKS 495 Query: 189 LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 L RE+ ++ L Y L+E G + +V R+ Q+ S+A+++L+ + Sbjct: 496 LTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQ 546 >UniRef50_A7HK15 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 Tax=Thermotogaceae RepID=A7HK15_FERNB Length = 233 Score = 219 bits (559), Expect = 7e-56, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 136/227 (59%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 +++K + Q Y+P+V A L++ LP +VE+DDL+Q G I LL A E+YD G F T Sbjct: 1 MLNKEMVIQEYIPMVTKIARDLKINLPYNVEIDDLIQEGVIALLQAAEKYDPRYGATFKT 60 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 +A R++GAM+D LR D++P++VR++ ++ + + ++ R T E++E LGID+ Sbjct: 61 FAYTRVKGAMIDYLRKLDYLPKNVRQDIKKFDRELLNFYEQNKRLPTYDEMSEILGIDVE 120 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + ++ + Q + D++ E ++ D EN + S L ++++EAI L Sbjct: 121 EVEEIYRELALKQSLNLDQYLFESDENSYGSIDIKSEENVKENAWKSILHEQLVEAINKL 180 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 E+EK++L++ ++ EL+LKEI VL V ESRVSQ+ + +LR L Sbjct: 181 DEKEKIILSMRFEHELSLKEIAEVLGVTESRVSQILGVILSKLRKML 227 >UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WQH6_CYAA5 Length = 297 Score = 219 bits (558), Expect = 8e-56, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 113/240 (47%), Gaps = 10/240 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+G + + Q + LV A + L + + L DL+Q G +GL+ VE++D +G Sbjct: 56 AKGQRARDKMIQANLRLVVSIAKKY---LNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYK 112 Query: 67 FTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR + + + +P + N + ++I +L +LGR T+ E+AE Sbjct: 113 FSTYAYWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAEN 172 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + I + R + ++ S + +E+ + + D +P + ++ Sbjct: 173 MDISVDKLRFLQQAAFKTKSRSLNIVIDENHTELGQLLPDEDSVSPSDFVKQQEKISQIN 232 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +E L R+K V+ L + ++L+ K IG + R Q++S+A++ LR + K+ Sbjct: 233 RMLENLSPRQKEVIILRFGLRDGKQLSYKAIGEQCGISHERARQIYSRALRILRKQSSKI 292 >UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria RepID=A1S281_SHEAM Length = 969 Score = 219 bits (558), Expect = 8e-56, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 106/230 (46%), Gaps = 18/230 (7%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + + + LV A + R +EL DL+Q G IGL+ AVE++D +G F+T Sbjct: 731 SAARDEMITFNLRLVLSVANKYLGR---GLELADLVQEGNIGLMKAVEKFDHRKGFKFST 787 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P V + ++ A L + GR +E++ L + Sbjct: 788 YATWWIRQAITRAIADQARIIRIPVHVNESLNKLISASKVLTHKFGRGPKISELSLILSM 847 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + Q+ + E ++ V D +P ++++D + + + + Sbjct: 848 PETKVENL------KQILVMEPVAEADHNTNGYV--DWAAMSPEEEIIDDDRDTNIKDLL 899 Query: 187 ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 + L ++EK VL L + EL L+E+G +V R+ Q+ ++++K+L Sbjct: 900 KGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRERIRQIEAKSLKKL 949 >UniRef50_C0QA49 RNA polymerase sigma factor n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QA49_DESAH Length = 238 Score = 219 bits (558), Expect = 8e-56, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 16 LWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRI 75 + Y LVR A R RLP+SV D+L+ AG +GL++AV+++D+ + + TYA RI Sbjct: 1 MIVEYAFLVRQIASRFARRLPSSVLFDELVSAGSLGLIDAVDKFDSGKHVSLKTYAQYRI 60 Query: 76 RGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQML 135 +GA+LDELRS D RS+R+ +++++A+ +E + A++ EVA+ L + + Y ML Sbjct: 61 KGAILDELRSMDTYSRSMRKKIQDISRAVKAIEDKKKGPASDNEVAKLLEVPLESYYDML 120 Query: 136 LDTNNSQLFSYDE----WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 D + + + S D + P L L+ + A+ TL E Sbjct: 121 TDIHGAAILSLDAFIRTGDNDTSSMTRFQAGIKGEHTPADLLDREELKGVLARAVTTLTE 180 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 +E+LV++LYY EEL LKEIG VL + ESR+ Q+H+ + +L+ K+ Sbjct: 181 KEQLVVSLYYYEELTLKEIGEVLTLTESRICQIHTAILIKLKVKIK 226 >UniRef50_C1A543 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A543_GEMAT Length = 251 Score = 219 bits (558), Expect = 9e-56, Method: Composition-based stats. Identities = 86/240 (35%), Positives = 131/240 (54%), Gaps = 3/240 (1%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 Y A + L + ++ LV H A ++ L + D+L+ AG IGL+ A+E +DA Sbjct: 7 QSYQAGNPSARDRLLEEHLGLVHHVARQVSRTLAVRADFDELVSAGTIGLMTALEGFDAS 66 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +G AF+T+A RIRGA+LDELR +D VPRS+RR RE+ A ++ GR + E+AE Sbjct: 67 RGLAFSTFAAPRIRGAILDELRKQDHVPRSIRRKTREITAAREAFQRASGRAPEDRELAE 126 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTD---DHQRENPLQQLLDSNLR 179 +L +D+ + D + D E ++ + + + L Sbjct: 127 QLNVDLETLWRWQADVEGAHHIPLDRAPGERENTTPVPAEVLTSGEESGVEDSLTHEQEV 186 Query: 180 QRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + +AI L E+E++VL+LYY EEL L EI VLE+ ESRVSQ+ S+A+ +LR +L L Sbjct: 187 SHLKDAILRLKEQERIVLSLYYFEELKLHEIAKVLELTESRVSQIRSKALSKLRVELKPL 246 >UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31 Tax=Bacteria RepID=RPOD_SERMA Length = 215 Score = 219 bits (558), Expect = 9e-56, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 8/202 (3%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRR 95 ++ DL+Q G IGL+ AV++++ +G F+TYA IR A+ + + +P + Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 96 NAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD 155 ++ + Q+ QE+GR T E+AER+ + R++L +E Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 120 Query: 156 SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEEL----NLKEIG 211 + +D E PL +LR + + L RE VL + + ++ L+E+G Sbjct: 121 -LGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEVG 179 Query: 212 AVLEVGESRVSQLHSQAIKRLR 233 +V R+ Q+ ++A+++LR Sbjct: 180 KQFDVTRERIRQIEAKALRKLR 201 >UniRef50_B1ZR25 RNA polymerase, sigma 28 subunit, FliA/WhiG n=2 Tax=Opitutaceae RepID=B1ZR25_OPITP Length = 262 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 129/231 (55%), Gaps = 3/231 (1%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 +D+ L +R++ LVR+ R+++ LP ++ DDL G GL+ AV ++D QG F +Y Sbjct: 28 VDEKDLIERHLYLVRNVVDRIKLNLPTHIDADDLYSVGVTGLIAAVRKFDPEQGCTFASY 87 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 A RIRGA+LDELR DW PR R +R++ + I ++EQ+LGR A++ E+ LG+ D Sbjct: 88 AAMRIRGAVLDELRRMDWCPRRARARSRKLKETIIEVEQKLGRAASDEEICSALGLTQKD 147 Query: 131 YRQMLLDTNNSQLFSYD---EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 Y + + D + D E + G S+ + D + L L + + + I Sbjct: 148 YAKWVEDARPVTFLAIDHRNENEDGEGASLHELLKDETDVTGRENLEKRELLELLTQRIS 207 Query: 188 TLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 LP+ K +L +YY E + L EI AV + ESR+ Q+H+Q I LR LG+ Sbjct: 208 ELPDIPKKILAMYYFENMRLAEIAAVFNLTESRICQIHAQTILGLRGYLGR 258 >UniRef50_C7I0T1 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Thiomonas intermedia K12 RepID=C7I0T1_THIIN Length = 250 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 98/224 (43%), Positives = 139/224 (62%), Gaps = 1/224 (0%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + +++P+VR A ++ +LPASV+ DL QAG IGL +A++R + F TYA Sbjct: 12 REERLSKHLPMVRRIAGQMAAQLPASVDFSDLEQAGMIGLWDALDRGEMQSPAQFATYAA 71 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+ DELR DW+PR R R++ +A L Q LGR+ + E+A LG ++A+Y Sbjct: 72 IRIRGAIYDELRKLDWLPRRSRAKERQIERAEQLLTQRLGRHPEDGELAAHLGWELAEYY 131 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 L +T+ ++ D ++ GD + D+ P + L D+ L + + AI LPER Sbjct: 132 DALAETSMQLVYLEDLTHDDGGDYADRKADEASLL-PEELLQDAQLERDLQAAIADLPER 190 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 EKLVL+LYYQE+L LK+IG VLEV ESRVSQL QA+ RLR +L Sbjct: 191 EKLVLSLYYQEDLQLKDIGRVLEVSESRVSQLMKQAVMRLRARL 234 >UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderiales RepID=B1K0Z2_BURCC Length = 857 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 13/231 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + + + + LV H A + + + LDDL Q G IGLL AVER+D +G F+T Sbjct: 513 QLARERMAVANLKLVFHLAKKYRY---SGEPLDDLAQEGNIGLLKAVERFDWRRGFKFST 569 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR + L + VP V A+ +++ LE E GR E+A RL + Sbjct: 570 YATWWIRQQIGRHLADKCRTVRVPVHVHEKAQRLSRETQALESETGRAPELHEIAARLNM 629 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + ++ + E + ++E V D +P+ + S L + + + + Sbjct: 630 AVQKVAELQRLA--PEPLPIHELPIDELIAVE-VRSDFVSPDPMDIVSKSELLETIDKLL 686 Query: 187 ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL +E+ L L + E L L+EIG V RV Q+ A++ L+ Sbjct: 687 STLKPKEEQTLRLRFGIGVEEALTLEEIGCQYGVTRERVRQIEVAALRNLK 737 >UniRef50_Q1AW69 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW69_RUBXD Length = 264 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 136/226 (60%), Gaps = 8/226 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y PLV++ A R+ R+P VE +DL+ G +GLL AVE +D +G F TYA+ Sbjct: 44 RDRLVVNYSPLVKYVAGRMAARIPGGVEQEDLVSWGVVGLLKAVETFDPARGAKFETYAI 103 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 +IR A+LDELR D +PR VRR RE +A L Q L R TE E+A +G+ +A++R Sbjct: 104 SKIRWAILDELRKADPLPRRVRRRVRETQRAASALTQTLRRAPTEAEIAREVGVGLAEHR 163 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 + L + ++ +S +E G+ EL D E + LR+R+ EA+E+L E Sbjct: 164 ETLERYHRARTWSLEELLSGMGEGGRELSVSDPTAET-------AELRERLAEALESLSE 216 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 RE++V+T YY + L L+EIG L + E R+SQ+ +A++RLR +L Sbjct: 217 RERVVITFYYYQGLTLREIGRALNLTEGRISQILRRALQRLRDRLS 262 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 120/240 (50%), Gaps = 11/240 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G + K + Q + LV A R Q R + L DL+Q G +GL+ AVE++D +G Sbjct: 55 EQGQIAKRKMIQANLRLVVSIAKRYQRR---GLSLLDLIQEGSLGLIRAVEKFDPSKGYK 111 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA +R A+ L + +P + N ++ +++ +L ELGR E EVA+R Sbjct: 112 FSTYAYWWVRQAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQR 171 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + I + R++ + S + +++ + V D P++ + L ++ Sbjct: 172 MEIPVEKLREIRHAVYRTDAKSLNITLDDNQTELGEVLPDETSL-PIEFVSQWELVTKIN 230 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + +E LP R++ ++TL + + ++ KEIG + R QL ++A++ L+ K +L Sbjct: 231 DLLEDLPPRQREIITLRFGLQTGKRMSYKEIGRQCGISHERARQLLNRAMRTLKQKAFRL 290 >UniRef50_Q01T87 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T87_SOLUE Length = 255 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + + + ++PLV+ A+R+ LP V+LDDL+ AG +GL +AV +YD + AF + Sbjct: 16 LQQRDQIVLDHLPLVKAIAIRVHENLPVHVDLDDLIHAGVMGLFDAVTKYDGDKNVAFHS 75 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA RI+GA+LD LR DW R +RR ++V L +LGR+ ++E+AE++G+ +A Sbjct: 76 YAKHRIKGAILDSLRQLDWASRDLRRRQKQVESVTRDLGVKLGRSPHDSEIAEQMGVGLA 135 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 +RQM ++ L S ++ + + + P + L + AI TL Sbjct: 136 RWRQMQIEMRTVGLVSATPNPDQDRERAQEFPAKPNLQ-PDRMCEQRQLESTLARAIGTL 194 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 P R + V+ LYY +L +KEIG VL V ESRVSQ+H A+K++ Sbjct: 195 PLRYQKVVFLYYTNDLTMKEIGEVLGVNESRVSQIHKIALKKM 237 >UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID=O22455_ARATH Length = 574 Score = 217 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 11/234 (4%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + K + + + LV A Q A + L DL+Q G GL+ E++DA +G F+ Sbjct: 331 GTLCKDKMIKSNIRLVISIAKNYQG---AGMNLQDLVQEGCRGLVRGAEKFDATKGFKFS 387 Query: 69 TYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA I+ A+ L + +P + V +A QL E G++ E+AE G Sbjct: 388 TYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATG 447 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + + +LL + ++ E++ D + L+ +RQ + + Sbjct: 448 LSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTS-EDILIKEFMRQDLDKV 506 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 +++L REK V+ + E L+EIG ++ V RV Q+ S A ++L+ K Sbjct: 507 LDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNK 560 >UniRef50_A1V9R7 RNA polymerase sigma factor n=10 Tax=Desulfovibrio RepID=A1V9R7_DESVV Length = 265 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 135/227 (59%), Gaps = 4/227 (1%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 +K ++ + Y P +R ALRL+ +LP +VEL +L+ AG +GL+ A+ ++ G F T Sbjct: 33 PAEKEAIVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFET 92 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA RIRGAMLDELR DW PRS+R+ R++ +A+ ++E E GR ATE ++ + G+D Sbjct: 93 YAESRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEK 152 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 D R L N S + + DS+ +P+Q L +RV I+ L Sbjct: 153 DVRLGLEALQNQLCLSLEAMQ----DSLAGEGGPQSDADPMQTAATQELIERVASLIDEL 208 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 REKLVL+LYY +ELN++E V+ + E RVSQLHSQA+ RLR + Sbjct: 209 TPREKLVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLRREF 255 >UniRef50_B5YIY5 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIY5_THEYD Length = 236 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 130/228 (57%), Gaps = 2/228 (0%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 DK SL ++++P ++H ALR + + +EL+DL+ AG GLL A+ +Y+ + Sbjct: 7 DKESLIKQFLPKIKHYALRYHHIVQSVLELEDLISAGIKGLLEALNKYNPSLNVPLVAFI 66 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRGA+LDE+RS D + R+ V + L+Q G++ T+ E+A L I + Sbjct: 67 DYRIRGAILDEIRSVDVFSKEFRKKVENVKKTYKNLKQS-GKDPTDEELANYLNITQEEL 125 Query: 132 RQMLLDTNNSQLFSYDEW-REEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 +++ S + S D + E+GD + L+ +N + + L++++ AIE L Sbjct: 126 QEVYQSITASDIVSLDSFVVGENGDKLNLLEVISDEKNIFEDIKFRELKEKLTSAIENLS 185 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E EKL+++LYY EELN+KEI VL + SRVSQ+H + + +L+ L K Sbjct: 186 ETEKLIISLYYYEELNMKEIAQVLGISLSRVSQIHGKTLLKLKNFLAK 233 >UniRef50_C5EM23 DNA-directed RNA polymerase specialized sigma subunit n=4 Tax=Clostridiales RepID=C5EM23_9FIRM Length = 244 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 5/236 (2%) Query: 5 YTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y G + ++ L Y+P+VR A++L+ + +E +DL G + L+ ++RYD + Sbjct: 4 YRKNGSQELRNKLVLHYLPIVRSAAVQLRTMAGSLLEQEDLTDQGVLALMECLDRYDPGK 63 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F TYA R+RGAM+D +RS+DWVP R ++V +A L E +VA Sbjct: 64 GARFETYAFVRVRGAMIDYIRSQDWVPHRARNFQKKVDEAFSILSHEKMGEPDVKDVAGY 123 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI---ELVTDDHQRENPLQQLLDSNLRQ 180 L + + + N++ + S++ ++ EL D P + L + + Sbjct: 124 LDMPVEKVENHIKYMNHASVLSFEAALQDMTAIFAKGELEAGDMDG-KPEESLFYREMME 182 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + AI+ L E+E+LV+TLYY EEL EI V+ +G+SRV Q+H++AI++L++ L Sbjct: 183 MLTAAIDGLGEKERLVITLYYYEELKYSEIAEVMGIGQSRVCQIHTKAIRKLKSSL 238 >UniRef50_Q67K31 RNA polymerase sigma factor related to flagellar biosynthesis n=1 Tax=Symbiobacterium thermophilum RepID=Q67K31_SYMTH Length = 253 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 133/237 (56%), Gaps = 4/237 (1%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + +L Q Y+ LVR+ A RL V +P V+ D+ G GLL A+ RYD +G Sbjct: 12 QSHDTAARDALVQHYLWLVRYVAGRLMVGMPDHVDQGDVEGHGCFGLLEAIARYDPDRGV 71 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F T+A+ IRGA L+ LR+ W P ++RR R++ + +L LGR + E+AE++G Sbjct: 72 RFETFAIPWIRGACLEGLRAMQWAP-ALRRRVRQLERVRDELMAVLGREPSAAELAEQMG 130 Query: 126 IDIADYRQMLLDTNNSQLFSYDE---WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 I + + + L + + S DE + + ++ D + +P + + R+ + Sbjct: 131 ISVEEAERRLQEAGTLAVLSLDEALAFDDGETTALADRVADEEAVDPELESQRAERREVL 190 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 AI +L E+E+LV+ L YQE L KE+ +L + ++R+SQ+HS+AI RLR KL ++ Sbjct: 191 ARAIASLTEQEQLVIALIYQEGLIAKEVSEILGLSQARISQVHSKAILRLRGKLSRM 247 >UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes RepID=Q2SRY7_MYCCT Length = 505 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 109/284 (38%), Gaps = 65/284 (22%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ L + + LV A + L ++ DL++ G IGL+ AV++++ +G F+TYA Sbjct: 208 RNKLIESNLKLVISVARK---HLNRGLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYAT 264 Query: 73 QRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I A+ + + +P + ++A+ QL QELGR E+A R+G I Sbjct: 265 WWISQAITRAIADQARTIRIPVHMVETINKLARVERQLTQELGREPNAEEIANRVGEGIT 324 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + + + + + S ++ + D+ +D +P + L++ + + E Sbjct: 325 SDKVIEIKKLSIEPVSLEKPFGDEDDTHFGDFVEDKDMVSPSEYTEKEILKEVMDKVFED 384 Query: 189 LPEREKLVL---------TLY--------------------------------------- 200 +P RE+ V+ L Sbjct: 385 MPPREEKVIRMRYGIVPTRLRTLLRLAQECNDTNAKELKQAIEELDIHLDTPIEKVRKFN 444 Query: 201 ----------YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 Y L+E+G L V R+ Q+ ++ I++L+ Sbjct: 445 NEIINNNLAKYDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 13/239 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 G + L + +V H A + Q R + L DLLQ G +GL+ ++E++ G Sbjct: 303 HSGNRSREKLINANLRMVVHIAKQYQGR---GLSLQDLLQEGSMGLMKSIEKFKPQVGCR 359 Query: 67 FTTYAVQRIRG----AMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F TYA IR A+ R+ +P +V +V++A E N T+ E+A+ Sbjct: 360 FATYAYWWIRQTVRKAIFQHSRTI-RLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAK 418 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 R+GI ++L W ++ + + +T D + E P + +R+ V Sbjct: 419 RIGITTVRLERLLYMARMPLSMQQTVWADQE-TTFQEITADIEVEIPELCVAKQLMRKHV 477 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + + L RE+ ++ L Y E +L EIG+V + + RV QL S+A+ +L+ L Sbjct: 478 LSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLA 536 >UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=B2IZW2_NOSP7 Length = 332 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 12/240 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + Q + LV A + Q +++ DL+Q G +GL VE++D +G Sbjct: 92 HQGQKAKQKMIQANLRLVVSIAKKYQRH---NLDFLDLIQEGSLGLERGVEKFDPTKGYK 148 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TY IR A+ + + +P + ++ + +L Q+LGR T ++AE Sbjct: 149 FSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTAVDIAEE 208 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L +D R LL ++ + +++ D +P L+Q + Sbjct: 209 LSLDPKQIRDYLLLARQPVSLELRVGSDKDIELQDMLED--NGLSPELYADHKFLQQNIQ 266 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + L +++ +LT + EL+L EIG + + RV Q+ QA+ LR K+ Sbjct: 267 NLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLRRHKDKI 326 >UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q116K5_TRIEI Length = 496 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 15/234 (6%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K+ + + LV A R Q R ++ DL+Q G IGLL A E++D +G Sbjct: 256 EQGRRAKNQMVTANLRLVTSVAKRYQNR---GLDFQDLIQEGVIGLLRATEKFDHTKGYK 312 Query: 67 FTTYAVQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNA-TETEVAE 122 F+TY + IR A+ + + P + ++ + + Q+ E + T EVA Sbjct: 313 FSTYGIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQISIE--CSPLTAEEVAT 370 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 R+ + + ++ + S D + + I E P + + ++ L++ V Sbjct: 371 RMEMTTEKLQFIIECAQ--ETLSLDYPINKGENIIYKEMIKFNGETPTKYVFENCLQEDV 428 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 ++TL ERE+ VL + + +E LKEIG + R+ Q+ ++A+++L Sbjct: 429 ESVLKTLTERERNVLQMRFGLDDGQEKTLKEIGDTFNLTRERIRQIEAKALRKL 482 >UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=2 Tax=stramenopiles RepID=A5JEM2_9STRA Length = 404 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 100/243 (41%), Gaps = 20/243 (8%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K ++ + LV A Q R V DL+Q G GL A E++D +G Sbjct: 143 KRASKSKSAIINANLRLVVSTAKAYQYR---GVSFQDLVQEGTCGLHKATEKFDPRKGFR 199 Query: 67 FTTYAVQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA I+ ++ + + V P V + +A E R T E+AE Sbjct: 200 FSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLREPTLAELAEA 259 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-----IELVTDD---HQRENPLQQLLD 175 G+ + DT ++ S D+ + ++ D R P + Sbjct: 260 TGLTPQKI--VFYDTVKDKVSSIDKTVGIGTKTNSMEKSQIAISDMCKDSRNKPEETAQV 317 Query: 176 SNLRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKR 231 +LRQ + I TL RE+ V+ + Y + L+EIG++ V RV Q+ ++A+ + Sbjct: 318 ESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIEARALHK 377 Query: 232 LRT 234 LR Sbjct: 378 LRQ 380 >UniRef50_D1B696 RNA polymerase sigma factor n=2 Tax=Synergistaceae RepID=D1B696_THEAS Length = 245 Score = 216 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 138/226 (61%), Gaps = 2/226 (0%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 ++ + +RY+PLV++ A R+ V P ++ DD+L G +GLL+A++R+D +G F T+A Sbjct: 20 NRERIVKRYIPLVKYVAGRMAVTPPPGLDYDDILSFGVMGLLDAMDRFDPSRGFCFQTFA 79 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 V RIRGA+LDELR DW+ R+ R + + +A+ + G + + ERLG++ Y Sbjct: 80 VPRIRGAILDELRRYDWISRTGRDKLQRLERAMEE-AAAEGTLLDDEALMERLGMNEKSY 138 Query: 132 RQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 R++L + S + S DE E G+ + +P +++ V A+E LP Sbjct: 139 RELLEIASRSYVVSLDEVLGLEDGEVKRDGLLEDPSPSPQEEVERREELALVRRALEELP 198 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 ERE+L+L+LYYQE L LKE+GAVL V ESR SQLH +AI LR+KL Sbjct: 199 ERERLLLSLYYQEGLTLKEVGAVLGVTESRASQLHGRAIAMLRSKL 244 >UniRef50_B0MPC6 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPC6_9FIRM Length = 251 Score = 216 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 130/233 (55%), Gaps = 4/233 (1%) Query: 5 YTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y G M+ ++ + Y+ LV+ A+ ++ E DD++ G I L+ A++ +D + Sbjct: 16 YRLTGDMNVRNEIVLMYMDLVKMIAVSMRNIYTGYAESDDIINEGVIALMAAIDGFDPEK 75 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F TYA RI+GA++D LR D VPR++R+ ++++ +L EL R T+ E+AE Sbjct: 76 NVKFETYAGIRIKGAVIDYLRKLDRVPRTLRKLSKQLDDNFARLNSELCRTPTDEELAES 135 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + A +++ +T S++E E D+++ E ++ + +Q + Sbjct: 136 MNMTTAQLSKLMANTAGMITLSFEELLYE--DNLDENIS-ASSETADAKMYEREKKQVIA 192 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 +A+ TLPE+EK V+T+YY E L EI V+ + +SRV Q+HS+A+ L+ KL Sbjct: 193 DAVATLPEKEKQVVTMYYYERLKYSEIAKVMSITQSRVCQIHSKAMLTLKNKL 245 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 216 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 11/236 (4%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 + + + + + + + LV A Q R DL+Q G IGL+ AVER++ +G Sbjct: 235 WQRKALEARTEMVECNLRLVVSIAREYQNR---GQPFLDLIQEGNIGLMRAVERFEYRRG 291 Query: 65 TAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F T A IR A+ + ++ +P + ++ + Q+ QE GR+ T ++A Sbjct: 292 YKFATCATWWIRQAISRSIANQARTIRIPTHMIDLLAKLIRVQRQMTQESGRDPTAEDLA 351 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 L + + R +L + EE G + +DH E+P +Q + LR++ Sbjct: 352 GELHLPLRRVRALLKMAEEPISI-HTPVGEEGGSRLGDFIEDHSVEDPSKQAAVAMLREK 410 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + TL ERE+ +L + E L+EIG +V RV Q+ ++A++++R Sbjct: 411 INAVLHTLTEREREILEQRFGLIDGRERTLEEIGRHFKVTRERVRQIEAKALRKMR 466 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 216 bits (551), Expect = 5e-55, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + L + LV A + R V DL+Q G +GL+ A E+++A +G F Sbjct: 120 QGEQAQRKLINANLRLVVSVAKKYLNR---GVPFLDLIQEGNMGLIRATEKFNAERGFRF 176 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR + + ++ +P + R + + +L + GR TE E+AE L Sbjct: 177 STYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEAL 236 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 GI + R ++ + S D + G+S + + D ++E P +++L +LRQ V Sbjct: 237 GIKVKKLR--MIQQAAALPLSLDVPVGQEGESRLGDLLPDERQEQPFEEILVQSLRQDVR 294 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 A++ L E+ VL L Y + L+E+G + R+ Q+ A+++LR Sbjct: 295 SAMQALKPIERQVLELRYGLDGQRARTLREVGDHFNLTRERIRQIERDALRKLR 348 >UniRef50_C6NWP6 RNA polymerase sigma factor for flagellar operon n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NWP6_9GAMM Length = 241 Score = 216 bits (551), Expect = 5e-55, Method: Composition-based stats. Identities = 104/225 (46%), Positives = 148/225 (65%), Gaps = 3/225 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERY-DALQGTAFTTYA 71 + +L RYVPLV+ A RL+ RLPA+V+L DL+QAG IGLL+ +E+Y + AF YA Sbjct: 13 RSALVARYVPLVQRIAQRLRARLPANVDLGDLIQAGLIGLLDVLEQYPEPDDSDAFLRYA 72 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRG+M+DELR +DW+PR R ++V++A+ QLEQ+LGR ++ EVA+ LG D+ DY Sbjct: 73 TLRIRGSMIDELREQDWLPRRARAKEQQVSRAMAQLEQQLGRPPSDQEVAKHLGWDLDDY 132 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPE 191 ++ + D+ ++ D + + + D H + + L + + EAI LPE Sbjct: 133 QKAIADSGGQLVYLEDLAADNDSFVGQYLRDRHADIS--EVLGSLEFDRHLQEAITRLPE 190 Query: 192 REKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 RE+LVL+LYY+EEL L+EIG VLEV ESRVSQ+ QA+ RLR L Sbjct: 191 RERLVLSLYYREELTLREIGEVLEVTESRVSQIVRQAVLRLRASL 235 >UniRef50_Q9RIS5 RNA polymerase sigma factor n=57 Tax=Streptomyces RepID=Q9RIS5_STRCO Length = 304 Score = 216 bits (550), Expect = 6e-55, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 9/234 (3%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 T E +++L + + LV+ A R + R S ++D++Q G IGL+ A++R++ +G Sbjct: 73 THEHAYVRNTLVELNLALVKFAASRFRSR---SEPMEDIIQVGTIGLIKAIDRFELSRGV 129 Query: 66 AFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F T+A+ I G + R W VPR ++ ++A+A +L Q L R T +E+AE Sbjct: 130 EFPTFAMPTIIGEIKRFFRDTSWSVRVPRRLQELRLDLAKAGDELAQRLDRAPTVSELAE 189 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 LG+ + + + +N S D EE L ++ L+ + + + Sbjct: 190 HLGLSKDEVVEGMAASNAYTASSLDAQPEEDDAEGALADRIGYEDHGLEGI---EYVESL 246 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 I LP R++ +L+L + + EIG L + + VS+L S+ + RLR L Sbjct: 247 KPLIAELPSRDRKILSLRFVAGMTQSEIGEELGISQMHVSRLLSRTLVRLRKGL 300 >UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 215 bits (549), Expect = 8e-55, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 11/229 (4%) Query: 14 HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQ 73 + + LV A Q R + L DL+QAG +GL+ + E++D +G F+TYA Sbjct: 356 DKIINCNLRLVISVAKNYQNR---GLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 412 Query: 74 RIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 IR ++ L +P + + + A L QE R+ T+ EVAE GI + Sbjct: 413 WIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTR 472 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 R + + ++ E+V D E+ + ++ + ++TL Sbjct: 473 LRHVTRCSRVPTSLDRCVGKDMDEKFSEIVA-DTNSESTETIVSKELFKKDLDRVLDTLT 531 Query: 191 EREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 REK V+ L Y + +L E+G + RV Q+ +A+++LR Sbjct: 532 AREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQN 580 >UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=rosids RepID=D1IHF7_VITVI Length = 561 Score = 215 bits (549), Expect = 9e-55, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 11/238 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 G + L + +V H A + Q R + L DLLQ G +GL+N+VE++ G Sbjct: 316 HSGNRSRQKLIYANLRMVVHIAKQYQGR---GLNLQDLLQEGSMGLMNSVEKFKPNAGCR 372 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F +YA IR A+ + +P ++ +V +A QE + T+ E+AER Sbjct: 373 FASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAER 432 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 +GI I +++LL T W ++ + + VT D E P + +RQ V Sbjct: 433 VGITIEKLQRLLLHTRMPLSMQQPVWADQD-TTFQEVTADTGIEIPDVSVAKQLMRQHVR 491 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + L +E+ ++ L + L EIG V + RV QL +A+ +L+ L Sbjct: 492 NLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLS 549 >UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK04_9BACT Length = 404 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 110/239 (46%), Gaps = 13/239 (5%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 S Y E + +++ + + LV A + + DL+Q G IGL++AVE+YDA Sbjct: 161 SYYRMENSV--NAMVEGNLRLVISIARKYSNSQEGFL---DLIQEGNIGLVSAVEKYDAS 215 Query: 63 QGTAFTTYAVQRIRGAMLD---ELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETE 119 G F+TYA IR A+ EL +P ++ ++ + +L Q+ GR AT E Sbjct: 216 FGYTFSTYATWWIRQAVSRARTELVRTMKLPANIMVKVNKIYRTERELFQKFGREATIDE 275 Query: 120 VAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLR 179 V+E + + A R + E G+ ++V++D P ++ L Sbjct: 276 VSEAVELSPAKIRSLKRMCQQPISLQTTVSEEHTGELGDIVSNDDDVL-PDAEVEQKQLH 334 Query: 180 QRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + ++ ++ L ERE+ +L + + E L+ I + R+ Q+ + A+K+LR Sbjct: 335 ESLVAMLDILNEREQEILRMRFGLADGEYHTLENIANEFGISRERIRQIETSALKKLRR 393 >UniRef50_D0MG99 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MG99_RHOM4 Length = 253 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 129/231 (55%), Gaps = 1/231 (0%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 ++ ++ VPLVR RL V V +DL G +GLL A++ YD +GT F + Sbjct: 18 SANREAVVLAAVPLVRSMVGRLSVPDHPLVTREDLENVGLMGLLQALDSYDPERGTPFVS 77 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA RIRGA++D LRS D +PR RR E+ QAI L Q LG + +VA+ LGI + Sbjct: 78 YAYGRIRGALVDYLRSIDALPRERRRKLAELQQAIETLRQTLGGEPEDQDVADYLGISLQ 137 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 +Y +L D S E E GD S+ + E L+ + ++L + V + I+ Sbjct: 138 EYYTLLTDAQRRFALSLQETVGEDGDQSVLETIPNEDAEKQLEDIDRASLIEYVTKLIQR 197 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 LPERE+ +L LYY E L L+EI +L + E+R+SQ+ + + LRT+L ++ Sbjct: 198 LPEREQNILALYYYENLTLREIAQLLGLTEARISQILGKTLLTLRTELQRV 248 >UniRef50_Q1YV82 Flagellar biosynthesis sigma factor FliA n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV82_9GAMM Length = 240 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 83/217 (38%), Positives = 129/217 (59%), Gaps = 5/217 (2%) Query: 20 YVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAM 79 Y+ LV+ AL L+ RLP +ELD+L+Q G IGL+ A + +D+ +G F +A RIRGA+ Sbjct: 23 YIGLVKRVALHLKGRLPNFMELDELIQVGMIGLIEADKSFDSTKGVDFEVFAKNRIRGAI 82 Query: 80 LDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTN 139 LD++R ++PRS + R+ +A L ELGR ++ E+A+ +G D +++ + Sbjct: 83 LDQVRKMSYLPRSAIVSIRDHNEASAALTGELGRAPSQAELADFMGKDADTFQKERTHAH 142 Query: 140 NSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTL 199 Q S + E D NP ++L++ + +I LPER++ +++L Sbjct: 143 RFQTVSLEAQTSESVD-----LPTGNSSNPEKELVEEQFMDALAASIGELPERDRTIVSL 197 Query: 200 YYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 YY EE+NLKEIGAVL+V ESRVSQ+ S +K LR K+ Sbjct: 198 YYVEEMNLKEIGAVLDVSESRVSQILSACVKTLRVKM 234 >UniRef50_C0ZT10 RNA polymerase sigma factor n=3 Tax=Rhodococcus erythropolis RepID=C0ZT10_RHOE4 Length = 272 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 11/244 (4%) Query: 1 MNSLYTAEGVMDK--HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVER 58 M SL + +K +S+ + +PL H A R Q R +DL Q +GL+ AV+R Sbjct: 34 MASLPPDDPTREKITNSIIELCLPLATHVARRYQGR---GQPFEDLEQVARVGLVQAVQR 90 Query: 59 YDALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNA 115 +D +G+ F ++AV + G + R W VPRS++ + +A+ L Q LGR Sbjct: 91 FDVDKGSDFLSFAVPTVMGEVRKHFRDHGWSVRVPRSLQERHLALNRALTSLSQTLGRAP 150 Query: 116 TETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLD 175 T E+A L I+ + Q L N+ + D G + L+ Q + + + Sbjct: 151 TVAELATELDIEPDEVEQGLTAGNSYRTTPLDTASAGDGSGLTLIDTLGQYD---EAISR 207 Query: 176 SNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + + + A+ LPERE+ ++ L + L +I + + + VS++ +Q +K+LRT+ Sbjct: 208 IDNHETLRPALLALPERERTIVVLRFFGHLTQSQIAEKIGISQMHVSRILTQTLKQLRTE 267 Query: 236 LGKL 239 +G++ Sbjct: 268 MGEI 271 >UniRef50_Q5WFS6 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFS6_BACSK Length = 254 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 4/233 (1%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + +L + Y+PLV + R+ LP+S+ D+L GLL+A+ ++D+ + F T Sbjct: 17 EVAAEALIEHYMPLVAYHVQRISNGLPSSISKDELKSHALSGLLDAIAKFDSKRALKFDT 76 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA RIRGA++D LR D +PR++R +++ Q QLEQE GR+ EVA +G+ Sbjct: 77 YASFRIRGAIIDGLRKEDRLPRTIRDKVKKLEQITEQLEQEKGRSVLPGEVAAAMGLPEK 136 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHG----DSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + + + S S D+ + ++ +D Q P +L++ + R+ + E Sbjct: 137 EIEALKREQFASHTLSLDDVMHMNDHLDPSAVAYQFEDEQAIMPDDKLVEEDTRKELAEM 196 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 I+ L E+LV+ L Y EEL+L EIG +L + SR+SQ+H++AI +LR L K Sbjct: 197 IKELGRNEQLVIQLSYYEELSLTEIGRILNLSTSRISQIHARAIAKLRKGLQK 249 >UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter michiganensis RepID=B0RI86_CLAMS Length = 347 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 12/235 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G+ K L + LV A R R + DL+Q G +GL+ AVE++D G F Sbjct: 106 DGMRAKQHLVNANLRLVVSIAKRYTGR---GLPFLDLIQEGNMGLVRAVEKFDYQAGFKF 162 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA I+ ++ + +P + + +L ELGR+ + E+A Sbjct: 163 STYASWWIKQSITRGMADTSRTIRIPVHTVEHINRINAVQRELGDELGRDPSMEEIARES 222 Query: 125 GIDIADYRQMLLDTNNSQLF-SYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + R +L GD+ + + +D P+ + + V Sbjct: 223 DTPVTKVRYLLDRAQEPMSLQVLVGGSGGDGDTEMADLIEDADVTQPIDVVTQQLMAAHV 282 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 I+ L ER+ V+ + + E +L + L V RV Q+ + + +LR Sbjct: 283 TRLIDGLAERDAEVVRMRFGLAGLEPRSLAFVSQQLGVTRERVRQIEKKVLAKLR 337 >UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria RepID=Q601Y8_MYCH2 Length = 676 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 112/246 (45%), Gaps = 18/246 (7%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + +L +R + LV + A R + R + DL+ G +G++ AV +YD +G F+ Sbjct: 428 GKKARDTLIKRNLRLVVNSAKRYKNR---GLGFIDLISEGNLGIIKAVAKYDYTRGFKFS 484 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + ++ + +L+QE G N T E++ERLG Sbjct: 485 TYATWWIRQAITRAVADQARLIRIPVHMVETINKINKVERELQQEKGLNPTAEEISERLG 544 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + + + + N S D+ E S D +P+ + + ++E Sbjct: 545 GEFSPDKIRYIKKINIDPISLDKAIGKEEDSSFSDFIKDENMISPVDYAIREEKAKVLLE 604 Query: 185 AIE-TLPEREKLVLTLYY----------QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 I+ TL E+ + Y + + +E+ A+ V + RV Q+ ++ +K+LR Sbjct: 605 MIDSTLDYDERDFIKRRYGVGTNDEGIPYQAHSFEELAAMRRVTKERVRQIEAKILKKLR 664 Query: 234 TKLGKL 239 T +L Sbjct: 665 TPHRRL 670 >UniRef50_A4FLE7 RNA polymerase sigma factor n=2 Tax=Saccharopolyspora erythraea RepID=A4FLE7_SACEN Length = 280 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 10/227 (4%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L ++P+ H A R R +DL Q +GL+NAV+R+D +G F +YAV Sbjct: 41 RDRLVTEHLPVAEHIARRFSHR---GESQEDLTQVATLGLINAVDRFDPGRGVDFLSYAV 97 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R W +PR ++ V+ AI +L QE GR T +E+AE LGI Sbjct: 98 PTIMGEVRRHFRDTGWAVRMPRRLQELHLSVSAAIARLSQEFGRAPTPSEIAEHLGISTN 157 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 D L N + S DE D+ E+ D N +L + R+ + + L Sbjct: 158 DVYHGLEAGNAYRSASLDELLT---DTDEIPLGDAIGSN-DAELDEVENRETIRPLLAEL 213 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 ERE+ +L + + + +I + + + VS+L S+ + LR +L Sbjct: 214 EERERRILVMRFFRGMTQTQIAEQVGISQMHVSRLLSRTLAWLRERL 260 >UniRef50_C7LQN4 RNA polymerase sigma factor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQN4_DESBD Length = 267 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 4/229 (1%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 DK + + + P ++ AL L+ +LPA +EL DL+ AG +GL+ A+ ++ F T Sbjct: 37 PSDKDCIARAFAPRIKIIALHLKAKLPAHIELSDLISAGTLGLMEALGKFQPELNIRFET 96 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 +A RIRGAMLDELR DW R +R+ +++ Q I EQE G T +E+ E G D Sbjct: 97 FADSRIRGAMLDELRRMDWYSRGLRQRIKKLEQVIRGFEQENGHAPTRSELLELTGQDRQ 156 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + L N+ + S D +++ D P + ++ ++ I+ L Sbjct: 157 ELEATLEAVNSQIILSLDAIQDQWNQPG----DGGNHREPFAAVAFHDIIDKLGHLIDRL 212 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 EREKLVL+LYY EE N+KE+ L++ E RVSQLHSQA+ +L+ + Sbjct: 213 NEREKLVLSLYYTEEFNMKEVALALDITEGRVSQLHSQALGKLKKMFVR 261 >UniRef50_A4E6Q4 RNA polymerase sigma factor n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6Q4_9ACTN Length = 263 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 9/236 (3%) Query: 5 YTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y G D + L ++ LVR A + + R LDDL+Q G +GLL A++R+D + Sbjct: 24 YKETGDPDAREQLVMSHMNLVRFLANKFKNR---GEPLDDLMQVGYLGLLKAIDRFDPER 80 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 G FTT+A I G + R + W VPR ++ + +V QA +L EL R+ E+ Sbjct: 81 GLEFTTFATPTILGEIKRHFRDKGWSVRVPRRLQELSAKVNQATDKLTNELQRSPKVEEI 140 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 AE L + + + + + ++ + D + D + ++ +L ++ R Sbjct: 141 AEYLDVTVDEVLEAMESSSAYTSVPIEAPGASDSDDAPSILDRYADDD--NELDFTDDRL 198 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + EAI RE+ V+ L + + + EI L + + +VS+L + +K+++ K+ Sbjct: 199 VIEEAIRDFSPREREVIELRFVKGMTQIEIAKKLGISQVQVSRLLRRTLKKIQDKI 254 >UniRef50_Q3ADC4 RNA polymerase sigma factor for flagellar operon n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADC4_CARHZ Length = 254 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ L + Y+PLVR + + ++LP + +D+ G IGL+ AVE YD +G F +YA Sbjct: 24 RNELLEYYLPLVRKVSAAMSLKLPTHLSREDIEGYGIIGLIEAVETYDQNRGVKFESYAS 83 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 +IR A++DELR ++++PRSV ++V + L LG +VAE+LG+ ++D Sbjct: 84 LKIRAAIIDELRKQNFLPRSVWDKIKKVTTSEEMLLNALGEEVPVEKVAEQLGVSVSDVL 143 Query: 133 QMLLDTNNSQLFSYDEWREEHG--DSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190 ++ S DE + G D + DD + +P + L + + EA++ L Sbjct: 144 KIKTLIALKNHLSLDEIIDPEGSVDRFAGLADDEKY-SPENKFLKRVEIEELREALKRLS 202 Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +RE+L+L L+Y EEL+LKEI AVL++ SRVSQ+ S+A+ +LR L + Sbjct: 203 DRERLILQLFYVEELSLKEIAAVLDISTSRVSQIASKALGKLRKLLNE 250 >UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI17_9GAMM Length = 367 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 13/243 (5%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 L + + + + LV + A R R + L DL++ G +GL+ AVE++D + Sbjct: 119 LVQKGDEAARKRMIESNLRLVVNIARRYLHR---GMSLLDLIEEGNLGLMRAVEKFDPER 175 Query: 64 GTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 G F+TYA IR + + +P V ++ +A +L Q+L + T E+ Sbjct: 176 GFRFSTYATWWIRQTIERGIMNQARTIRLPIHVVKDLNGCLRAARELTQQLDHDPTTQEI 235 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLR 179 A R + +++ N ++ S D + D S+ D +P +Q+ D ++ Sbjct: 236 ASRTHKTATEVSRLM--GLNERVSSMDAPLGPNSDSSVAETIADEHGCDPSEQIQDDDVH 293 Query: 180 QRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 V ++ L E+++ V+ + + L+E+G + + RV Q+ +A+KRLR Sbjct: 294 DSVAHWLDELSEKQREVVVRRFGLLGYDSCTLEEVGQEIGLTRERVRQIQVEALKRLRRI 353 Query: 236 LGK 238 L + Sbjct: 354 LER 356 >UniRef50_C0C1N2 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1N2_9CLOT Length = 274 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 135/238 (56%), Gaps = 3/238 (1%) Query: 4 LYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 LY G ++ K + RY+ +V+ A++++ +++D++ G I L+ A+++Y+A Sbjct: 22 LYRKTGSLEVKQEIALRYLYIVKSIAVQMRNVYAGFSQVEDIVNEGVIMLMKAIDKYEAD 81 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 + F TY +RIRG ++D R +DW+PR+VR++ R++ +A E GR E++E Sbjct: 82 KNAKFETYVSKRIRGMIIDIARKQDWIPRTVRKSYRDIKEASAVFYSEHGREPEAEELSE 141 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE--LVTDDHQRENPLQQLLDSNLRQ 180 L +DI +R ++ + + S D EE + + D + E P L+D R Sbjct: 142 LLHMDIEKFRDIMGKASLFSVLSLDMVLEETKEQYRSIQIPSDKKEEQPEAHLMDKEFRH 201 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + + I +L E E+ V++LYY EELN+KEI +L V E R+SQ+H+ AI++LR + Sbjct: 202 MLADGIRSLKENEQTVISLYYMEELNMKEIAGILHVSEPRISQIHAGAIRKLREYFTE 259 >UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 Tax=Actinomycetales RepID=HRDC_STRCO Length = 339 Score = 213 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + + + LV A R R + L D++Q G +GL+ AVE++D +G Sbjct: 97 HDGQEAKDHMVRANLRLVVSMAKRHAHR---GLPLLDVIQEGNLGLIRAVEKFDHTKGFK 153 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L + +P V +++A+ +L L R T EVA Sbjct: 154 FSTYATWWIRQAIERGLATHARTVRLPVHVVEQLQKLAKVERKLRAGLDREPTTEEVAAE 213 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 GID+ + L S D +E GD+ + + D + + L + Sbjct: 214 SGIDVDKV--VWLRRVGRDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAEL 271 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 EA+ TL RE L+L+L Y L+++ + + RV QL +++ LR Sbjct: 272 REAVGTLAPRESLILSLRYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLRA 327 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia ... 314 2e-84 UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacte... 313 3e-84 UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia R... 312 6e-84 UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacter... 311 1e-83 UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmatac... 308 1e-82 UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacter... 307 2e-82 UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacter... 306 4e-82 UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria Re... 306 4e-82 UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmic... 306 4e-82 UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellu... 305 6e-82 UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicro... 305 6e-82 UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 305 8e-82 UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi... 305 1e-81 UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermot... 304 1e-81 UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacter... 304 2e-81 UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 304 2e-81 UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Strep... 304 2e-81 UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 304 2e-81 UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria Re... 304 2e-81 UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actino... 304 2e-81 UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily... 304 2e-81 UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacter... 304 2e-81 UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria Re... 303 3e-81 UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteob... 302 5e-81 UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae ... 302 5e-81 UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria Rep... 302 6e-81 UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia bal... 302 7e-81 UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria Rep... 302 9e-81 UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothr... 301 1e-80 UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacter... 300 2e-80 UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi ... 300 2e-80 UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteo... 300 2e-80 UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteo... 300 3e-80 UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphapr... 300 3e-80 UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Prote... 299 4e-80 UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 299 5e-80 UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Prote... 299 6e-80 UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella ... 299 8e-80 UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi ... 298 9e-80 UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria R... 297 2e-79 UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacter... 297 2e-79 UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 297 2e-79 UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteo... 297 2e-79 UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 296 4e-79 UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteri... 296 5e-79 UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium ... 295 9e-79 UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia Re... 295 1e-78 UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter ... 294 1e-78 UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria Rep... 294 2e-78 UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria Re... 293 3e-78 UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 292 5e-78 UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexac... 292 5e-78 UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria Rep... 291 1e-77 UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister in... 291 1e-77 UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 T... 291 1e-77 UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 291 2e-77 UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 291 2e-77 UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia Re... 290 2e-77 UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamy... 290 3e-77 UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacte... 289 5e-77 UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacter... 288 9e-77 UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea... 287 2e-76 UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella... 286 5e-76 UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilo... 285 6e-76 UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular or... 285 9e-76 UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcale... 285 9e-76 UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 285 9e-76 UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacte... 284 1e-75 UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellul... 284 1e-75 UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellul... 284 1e-75 UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 284 2e-75 UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium ... 284 2e-75 UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E... 284 2e-75 UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellul... 284 3e-75 UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrel... 284 3e-75 UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily... 283 3e-75 UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomyceta... 283 4e-75 UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria Re... 283 4e-75 UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD su... 283 4e-75 UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomyceta... 282 5e-75 UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteri... 282 6e-75 UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/V... 282 6e-75 UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 281 1e-74 UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacter... 281 1e-74 UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsu... 281 2e-74 UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 280 2e-74 UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci R... 280 2e-74 UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia... 280 2e-74 UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacte... 280 3e-74 UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptospora... 280 3e-74 UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. ... 280 3e-74 UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia... 280 4e-74 UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsi... 279 8e-74 UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteob... 278 1e-73 UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicro... 276 5e-73 UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 275 6e-73 UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcu... 274 1e-72 UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicro... 274 2e-72 UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax... 274 2e-72 UniRef50_P0A2E9 RNA polymerase sigma factor for flagellar operon... 274 2e-72 UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacte... 274 2e-72 UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyano... 273 3e-72 UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter ... 273 4e-72 UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=... 273 4e-72 UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteri... 273 4e-72 UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobi... 273 5e-72 UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium ... 272 6e-72 UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 272 6e-72 UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily... 272 7e-72 UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma ... 272 8e-72 UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasma... 272 8e-72 UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobact... 272 1e-71 UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus ... 271 1e-71 UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermob... 271 1e-71 UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 271 2e-71 UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis... 271 2e-71 UniRef50_UPI0001B5857A putative RNA polymerase sigma factor n=1 ... 270 2e-71 UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogace... 270 2e-71 UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycet... 270 3e-71 UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacter... 269 6e-71 UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi ... 269 6e-71 UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobact... 269 6e-71 UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes... 268 9e-71 UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus... 268 1e-70 UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 268 1e-70 UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 268 2e-70 UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacter... 267 2e-70 UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcale... 267 2e-70 UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 266 4e-70 UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteob... 266 6e-70 UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacter... 265 7e-70 UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 265 8e-70 UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteo... 265 8e-70 UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece R... 265 8e-70 UniRef50_A4FMD9 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 265 8e-70 UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculu... 265 8e-70 UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilo... 265 9e-70 UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium ce... 265 1e-69 UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter ... 264 1e-69 UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulf... 264 2e-69 UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderi... 264 2e-69 UniRef50_B8I3M5 RNA polymerase sigma factor n=3 Tax=Clostridium ... 264 2e-69 UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobi... 263 3e-69 UniRef50_A0LC35 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 263 5e-69 UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrob... 263 5e-69 UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteri... 262 6e-69 UniRef50_P17211 RNA polymerase sigma factor whiG n=26 Tax=Bacter... 262 7e-69 UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria Rep... 262 7e-69 UniRef50_C7QA49 RNA polymerase sigma factor n=7 Tax=Actinobacter... 262 8e-69 UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subf... 262 1e-68 UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora p... 262 1e-68 UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochlori... 261 2e-68 UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea s... 260 2e-68 UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes R... 260 2e-68 UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromo... 260 3e-68 UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivi... 260 3e-68 UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG fami... 260 4e-68 UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmiu... 259 4e-68 UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus ... 259 5e-68 UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, s... 259 5e-68 UniRef50_C7R3C2 RNA polymerase sigma factor n=1 Tax=Jonesia deni... 259 6e-68 UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter ... 258 1e-67 UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 T... 258 1e-67 UniRef50_Q47I32 RNA polymerase sigma factor n=1 Tax=Dechloromona... 257 2e-67 UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma h... 257 2e-67 UniRef50_Q6MI54 RNA polymerase sigma factor n=1 Tax=Bdellovibrio... 257 2e-67 UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacter... 257 2e-67 UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31... 257 3e-67 UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycopla... 256 4e-67 UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 ... 255 6e-67 UniRef50_B0K1Q2 RNA polymerase sigma factor n=11 Tax=Thermoanaer... 255 7e-67 UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria Rep... 255 7e-67 UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderia... 255 9e-67 UniRef50_A8MHG6 RNA polymerase sigma factor n=2 Tax=Alkaliphilus... 254 1e-66 UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacter... 254 2e-66 UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistip... 254 2e-66 UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter... 254 2e-66 UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobaci... 254 2e-66 UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID... 253 3e-66 UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosipho... 253 4e-66 UniRef50_B7ATU0 RNA polymerase sigma factor n=2 Tax=Bacteria Rep... 253 4e-66 UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomyceta... 253 4e-66 UniRef50_C0ZF72 RNA polymerase sigma factor n=5 Tax=Bacillales R... 253 5e-66 UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular ... 252 6e-66 UniRef50_D1BJ83 RNA polymerase sigma factor n=1 Tax=Sanguibacter... 252 6e-66 UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma R... 252 9e-66 UniRef50_Q04SE0 RNA polymerase sigma factor n=12 Tax=Bacteria Re... 252 9e-66 UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium o... 252 1e-65 UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasm... 252 1e-65 UniRef50_Q2RKC7 RNA polymerase sigma factor n=1 Tax=Moorella the... 251 1e-65 UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, s... 251 2e-65 UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundu... 251 2e-65 UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece s... 251 2e-65 UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiell... 250 2e-65 UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium ... 250 2e-65 UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera... 250 2e-65 UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepI... 250 3e-65 UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium ca... 250 3e-65 UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Prote... 250 4e-65 UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragmen... 249 4e-65 UniRef50_Q1NP84 RNA polymerase sigma factor n=1 Tax=delta proteo... 249 7e-65 UniRef50_Q0AYK8 RNA polymerase sigma factor n=1 Tax=Syntrophomon... 248 1e-64 UniRef50_A5G8Y3 RNA polymerase sigma factor n=9 Tax=Desulfuromon... 248 1e-64 UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 T... 248 1e-64 UniRef50_D2SFP2 RNA polymerase, sigma 28 subunit, Sig B/F/G subf... 248 1e-64 UniRef50_A1HN10 RNA polymerase sigma factor n=4 Tax=Veillonellac... 248 1e-64 UniRef50_Q1Q6T7 Strongly similar to RNA polymerase sigma factor ... 248 1e-64 UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacteri... 248 1e-64 UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily... 247 3e-64 UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis ... 247 3e-64 UniRef50_A0Q044 RNA polymerase sigma factor n=30 Tax=Clostridium... 247 3e-64 UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 T... 247 3e-64 UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium o... 246 4e-64 UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema Re... 246 4e-64 UniRef50_C1RMF4 RNA polymerase sigma factor n=1 Tax=Cellulomonas... 246 4e-64 UniRef50_C4ZA81 RNA polymerase sigma factor n=3 Tax=Clostridiale... 246 4e-64 UniRef50_B9CP17 RNA polymerase sigma factor n=1 Tax=Atopobium ri... 246 6e-64 UniRef50_P10726 RNA polymerase sigma-D factor n=24 Tax=Bacillale... 245 6e-64 UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacteri... 245 8e-64 UniRef50_B2A375 RNA polymerase sigma factor n=1 Tax=Natranaerobi... 245 1e-63 UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 245 1e-63 UniRef50_A4J745 RNA polymerase sigma factor n=1 Tax=Desulfotomac... 245 1e-63 UniRef50_B8FK28 RNA polymerase sigma factor n=2 Tax=Proteobacter... 244 2e-63 UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax f... 244 2e-63 UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus P... 244 2e-63 UniRef50_C8QWD0 RNA polymerase sigma factor n=1 Tax=Desulfurivib... 244 2e-63 UniRef50_C9YEL0 RNA polymerase sigma factor n=1 Tax=Curvibacter ... 243 4e-63 UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis... 242 6e-63 UniRef50_Q4BV73 RNA polymerase sigma factor n=1 Tax=Crocosphaera... 242 8e-63 UniRef50_C0QXY0 RNA polymerase sigma factor n=2 Tax=Brachyspira ... 242 8e-63 UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma m... 242 8e-63 UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas... 242 9e-63 UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 ... 241 1e-62 UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroi... 241 1e-62 UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibri... 241 1e-62 UniRef50_C5RI15 RNA polymerase sigma factor n=1 Tax=Clostridium ... 241 2e-62 UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q... 240 3e-62 UniRef50_D1C190 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 ... 240 3e-62 UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothe... 240 3e-62 UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana R... 240 3e-62 UniRef50_Q5ZUL1 RNA polymerase sigma factor n=6 Tax=Legionella p... 240 4e-62 UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderi... 240 4e-62 UniRef50_D2QYQ7 RNA polymerase, sigma 28 subunit, FliA/WhiG n=7 ... 240 4e-62 UniRef50_P29248 RNA polymerase sigma factor for flagellar operon... 239 5e-62 UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromona... 239 6e-62 UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydro... 239 6e-62 UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacteriu... 239 7e-62 UniRef50_A0LI23 RNA polymerase sigma factor n=1 Tax=Syntrophobac... 238 1e-61 UniRef50_Q2LT13 RNA polymerase sigma factor n=1 Tax=Syntrophus a... 238 1e-61 Sequences not found previously or not previously below threshold: UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=C... 239 7e-62 >UniRef50_C4G0D3 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0D3_ABIDE Length = 409 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 L + + LV A + R + DL+Q G +GL+ AV+++D +G Sbjct: 166 EGDQYATDRLTESNLRLVVSIAKKYVGR---GLSFLDLIQEGNLGLIKAVDKFDYSKGYK 222 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + + + L QELGR TE E+A+ Sbjct: 223 FSTYATWWIRQAITRSIADQSRTIRIPVHMSEVINKAYRISRSLLQELGREPTEEEIAKE 282 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R+++ + S D E DS + D P + L+ ++ Sbjct: 283 MNLPVEKVREIMKISA--DPISLDTPIGEEDDSHLGDFIKDDTIMGPEDAAAYTMLQDQI 340 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + TL ERE+ VL L + L+E+G V R+ Q+ ++A+++LR Sbjct: 341 QKLLTTLSEREQRVLILRFGLLDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLR 395 >UniRef50_P52328 RNA polymerase sigma factor rpoD n=191 Tax=Bacteria RepID=RPSD2_BACSP Length = 377 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 135 NGDEEAKRRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNMGLIKAVEKFDHNKGFK 191 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL QELGR T E+A Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAE 251 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R+++ + S + E DS + +D + P L++++ Sbjct: 252 MELSVEKVREIMKIAQ--EPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQL 309 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL ERE+ VL L + + L+E+G V V R+ Q+ ++A+++LR Sbjct: 310 EDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 364 >UniRef50_Q3AEW8 RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ Length = 370 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K L + + LV A R R + DL+Q G +GLL AVE++D +G Sbjct: 128 EGDEEAKRKLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLLKAVEKFDYRKGYK 184 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L QELGR T E+A+ Sbjct: 185 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKE 244 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 +GI R+++ + S + E DS + +D + P+++ + LR+++ Sbjct: 245 MGISEDKVREIMKIAQ--EPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQL 302 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E ++TL ERE+ VL L + + L+E+G + V R+ Q+ ++A+++LR Sbjct: 303 DEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357 >UniRef50_P0A4J0 RNA polymerase sigma factor rpoD n=39 Tax=Bacteria RepID=RPOD_STRR6 Length = 369 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A + K L + + LV A R R ++ DL+Q G +GL+ AV+++D +G Sbjct: 126 AGDIEAKQRLAEANLRLVVSIAKRYVGR---GMQFLDLIQEGNMGLMKAVDKFDYSKGFK 182 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L QELG++ T ++AER Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAER 242 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + R++L + S + E DS + +D ENP+ LR+++ Sbjct: 243 MDMTPDKVREILKIAQ--EPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQL 300 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 E ++TL +RE+ VL L + + L+++G V V R+ Q+ ++A+++LR Sbjct: 301 DEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQ 356 >UniRef50_D1ASA0 RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI Length = 649 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 113/240 (47%), Gaps = 14/240 (5%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 + K + + + LV A + R ++ DL+Q G IGL+ AV+++D Sbjct: 403 QKHERTANKAKQEMIKANLRLVVSIAKKYSNR---GLQFLDLVQEGNIGLMKAVDKFDYK 459 Query: 63 QGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETE 119 +G F+TYA +R A+ + + +P + ++ + + Q+ E+GR T E Sbjct: 460 RGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEE 519 Query: 120 VAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNL 178 ++ RLG+++ R+++ S + + S +D + P + ++L Sbjct: 520 LSARLGMNVEKIRKVMKIVK--DPVSLESPIGDDDSSTFGDCIEDKRAVKPENAAVLADL 577 Query: 179 RQRVMEAIETLPEREKLVLTLYY-----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 R+ + + TL +E+ +L + + ++ L+E+G + V R+ Q+ ++A+++LR Sbjct: 578 REITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLR 637 >UniRef50_Q1RKH7 RNA polymerase sigma factor rpoD n=19 Tax=Bacteria RepID=RPOD_RICBR Length = 641 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 12/242 (4%) Query: 1 MNSLYTAEGV--MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVER 58 +N++ +E K + + + LV A + R ++ DL+Q G IGL+ AV++ Sbjct: 375 VNAIQKSERQTLQAKKDMIEANLRLVISIAKKYANR---GLQFLDLIQEGNIGLMKAVDK 431 Query: 59 YDALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNA 115 ++ +G F+TYA IR A+ + + +P + ++ + Q+ ELG Sbjct: 432 FEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQMLNELGYEP 491 Query: 116 TETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLD 175 T E+A RL + I R+++ + + +D P+ + Sbjct: 492 TPAEIAARLSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNAVAPIDAAIQ 551 Query: 176 SNLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKR 231 SNLR+ + TL RE+ VL + + + L+E+G +V R+ Q+ S+A+++ Sbjct: 552 SNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRK 611 Query: 232 LR 233 L+ Sbjct: 612 LQ 613 >UniRef50_P52331 RNA polymerase sigma factor rpoD n=60 Tax=Bacteria RepID=RPOD_LISMO Length = 374 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A + K L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 132 AGDIEAKGRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNMGLMKAVEKFDFNKGFK 188 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L Q+LGR+ + E+ E Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 248 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + R++L + S + E DS + +D +P L++++ Sbjct: 249 MDLPTEKVREILKIAQ--EPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQL 306 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL +RE+ VL L + + L+E+G V V R+ Q+ ++A+++LR Sbjct: 307 EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLR 361 >UniRef50_A5IMD4 RNA polymerase sigma factor n=24 Tax=Bacteria RepID=A5IMD4_THEP1 Length = 407 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 13/241 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + K L + LV A R R + DL+Q G IGLL AVE++D Sbjct: 152 LARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGR---GLSFQDLIQEGNIGLLKAVEKFD 208 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 +G F+TYA IR A+ + + +P + ++ + + Q+ G + Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 268 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDS 176 E+A+ +G +++L + S + E D SIE D +P ++ + Sbjct: 269 EELAKMMGKPPEKIKEILEAAK--ETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRM 326 Query: 177 NLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 +R+ + + ++TL RE +VL + Y + L+E+G V R+ Q+ +A+++L Sbjct: 327 LMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKL 386 Query: 233 R 233 R Sbjct: 387 R 387 >UniRef50_Q99TT5 RNA polymerase sigma factor rpoD n=78 Tax=Firmicutes RepID=RPOD_STAAN Length = 368 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 113/234 (48%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + K L + + LV A R R + DL+Q G +GL+ AVE++D +G F Sbjct: 127 GDEVAKSRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNMGLIKAVEKFDFNKGFKF 183 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + QL Q+LGR+ E+ E + Sbjct: 184 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEM 243 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 + R++L + S + E DS + +D + ++P L++++ Sbjct: 244 DLPAEKVREVLKIAQ--EPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLE 301 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL +RE+ VL L + + L+E+G V V R+ Q+ ++A+++LR Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 355 >UniRef50_Q87DT7 RNA polymerase sigma factor rpoD n=599 Tax=cellular organisms RepID=RPOD_XYLFT Length = 618 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 112/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+ K + + + LV A + R ++ DL+Q G IGL+ AV +++ +G Sbjct: 374 AKASKAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVCKFEHRRGFK 430 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ Q+ GR AT E+A+ Sbjct: 431 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKE 490 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + R+++ + S + + DS + +D E+P+ + NL + V Sbjct: 491 MDMPEDKIRKVMKIAK--EPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNVNLSETV 548 Query: 183 MEAIETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E + L RE VL + + ++ L+E+G +V R+ Q+ ++A+++LR Sbjct: 549 REVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 603 >UniRef50_B2UM02 RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 Length = 688 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E K + + + LV A + R + DL+Q G +GL+ AVE+++ +G Sbjct: 442 REARRAKDEMVEANLRLVISIAKKYTNR---GLSFLDLIQEGNMGLMKAVEKFEYRRGYK 498 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL QE GR T E+AE Sbjct: 499 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEE 558 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREE-HGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R +L Q S + S +D ENP+++ S L++++ Sbjct: 559 IHLPVERVRSVLKMAQ--QPISLQAPVGDSDDTSFGDFIEDKAAENPMEEASFSFLKEKI 616 Query: 183 MEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL +RE+ V+ + L+E+G V R+ Q+ ++A+++LR Sbjct: 617 KDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLR 671 >UniRef50_B8FTY1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=B8FTY1_DESHD Length = 372 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 K L + + LV A R R + DL+Q G +GL+ AVE++D ++G F Sbjct: 131 GDESAKRRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIKAVEKFDYVKGFKF 187 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + QL QELGR T E+A ++ Sbjct: 188 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQM 247 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 I + R+++ + S + E DS + D P + L++++ Sbjct: 248 DISVERVREIMKIAQ--EPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLE 305 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E +ETL RE+ VL L + + L+E+G V R+ Q+ ++A+++LR Sbjct: 306 EVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLR 359 >UniRef50_A7NGG2 RNA polymerase sigma factor n=15 Tax=Chloroflexi (class) RepID=A7NGG2_ROSCS Length = 405 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 EG + L Q + LV A + R + L DL+Q G IGL+ A E++D +G F Sbjct: 164 EGQAARERLIQANLRLVVSIAKKYLGR---GMSLLDLIQEGNIGLMRATEKFDYRKGYKF 220 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P V V + +++Q GR+ T E+A L Sbjct: 221 STYATWWIRQAITRVIADQSRTIRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIALEL 280 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 GI + R++L Q S + GDS + +D + P++ LR+++ Sbjct: 281 GIPVEKVRRVLEAAR--QTISLETPIGPEGDSVLADFIEDGKGATPMESASSHILREQID 338 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 A+E LPERE+ ++ L Y L+E+G + R+ Q+ ++ +++LR Sbjct: 339 SALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLR 392 >UniRef50_P77994 RNA polymerase sigma factor rpoD n=6 Tax=Thermotogaceae RepID=RPOD_THEMA Length = 399 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 13/241 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + K L + LV A R R + DL+Q G IGLL AVE++D Sbjct: 144 LARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGR---GLSFQDLIQEGNIGLLKAVEKFD 200 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 +G F+TYA IR A+ + + +P + ++ + + Q+ G + Sbjct: 201 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSI 260 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDS 176 E+A+ +G +++L + S + E D SIE D +P ++ + Sbjct: 261 EELAKMMGKPPEKIKEILEAAK--ETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRM 318 Query: 177 NLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 +R+ + + ++TL RE +VL + Y + L+E+G V R+ Q+ +A+++L Sbjct: 319 LMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKL 378 Query: 233 R 233 R Sbjct: 379 R 379 >UniRef50_Q04506 RNA polymerase sigma factor rpoD n=15 Tax=Bacteria RepID=RPOD_LACLA Length = 386 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K L + + LV A R R ++ DL+Q G +GL+ AV+++D +G Sbjct: 145 EGAEFAKQMLAEANLRLVVSIAKRYSGR---GMQFLDLIQEGNMGLMKAVDKFDHTKGFK 201 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L QELGR+ + E+ + Sbjct: 202 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRNLLQELGRDPSPEEIGKE 261 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L + R++L + S + E DS + +D E+P+ LR+++ Sbjct: 262 LHMAPDKVREVLKIAQ--EPVSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQL 319 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E ++TL +RE+ VL + + + L+++G +V R+ Q+ ++AIK+LR Sbjct: 320 DEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLR 374 >UniRef50_C1SK63 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SK63_9BACT Length = 626 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + + LV A + R ++ DL+Q G IGL+ AVE+++ +G F+T Sbjct: 387 EKAKSKLIEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVEKFEYKRGYKFST 443 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ + QL+Q++GR T E++ ++ I Sbjct: 444 YATWWIRQAITRAIADQARTIRIPVHMIETINKMMKITRQLQQDMGREPTPEEISSKMDI 503 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + ++++ + S + E D S+ +D +NP +++ L++ + Sbjct: 504 PVEKIKKVMKIAK--EPVSLETPIGEDEDSSLGDFIEDKSAKNPSEEVTYLKLKEHTKQI 561 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +ETL RE VL L + E L+E+G V R+ Q+ ++A+++LR Sbjct: 562 LETLSHREASVLKLRFGIECDSDHTLEEVGKQFNVTRERIRQIEAKALRKLR 613 >UniRef50_UPI0001AF1456 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=UPI0001AF1456 Length = 430 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 13/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G M K L + + LV A R R + + DL+Q G +GL+ AVE++D +G F+ Sbjct: 190 GRMAKRRLIEANLRLVVSVAKRYVGR---GLTMLDLVQEGNLGLIRAVEKFDYARGYKFS 246 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR AM L + VP V V + ++ QE GR T EVA L Sbjct: 247 TYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGREPTPEEVAAHLD 306 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + ++L + S E D ++ + +D +P++ LR+ + Sbjct: 307 LPPERVGEVLRLAQ--EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEA 364 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + TL ERE+ V+ L Y L+EIG + V R+ Q+ S+ + +LR Sbjct: 365 VLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDH 419 >UniRef50_Q47RL2 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=Q47RL2_THEFY Length = 388 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 110/241 (45%), Gaps = 13/241 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 +N L G + K L + + LV A R R + L DL+Q G +GL+ AVE++D Sbjct: 142 LNELVRE-GKLAKRRLIESNLRLVVSVAKRYLGR---GLALLDLIQEGNLGLIRAVEKFD 197 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 +G F+TYA IR A+ + + VP + + +A+ +L QELGR T Sbjct: 198 YTRGYKFSTYATWWIRQAITRAIADQARTIRVPVHMVESINRLARTRRRLHQELGREPTL 257 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSN 177 E++ L +D ++ + + S E + +D P++ Sbjct: 258 HELSRELNVDHDRVVEIHRVSQ--EPISLHTPIGEEDSAFGDFIEDTDAVPPVEAAAFVM 315 Query: 178 LRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L+ ++ + + L ERE+ V+TL + + L+E+G V R+ Q+ S+ + +LR Sbjct: 316 LQDQLAQVLGGLSEREQRVITLRFGLEDGKPHTLEEVGRKFGVTRERIRQIESKTLAKLR 375 Query: 234 T 234 Sbjct: 376 Q 376 >UniRef50_B0TG57 RNA polymerase sigma factor n=11 Tax=Bacteria RepID=B0TG57_HELMI Length = 371 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 129 EGDEAAKRRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIKAVEKFDYRKGYK 185 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL QE GR E+A+ Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPMPEEIAKE 245 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I + R+++ + S + E DS + +D P + L++++ Sbjct: 246 MDIPVERVREIMKIAQ--EPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKEQL 303 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E +ETL RE VL L + + L+E+G V R+ Q+ ++A+++LR Sbjct: 304 EEVLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLR 358 >UniRef50_P0A603 RNA polymerase sigma factor rpoD n=66 Tax=Actinobacteria (class) RepID=RPOD_MYCBO Length = 528 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K+ L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 286 RDGDRAKNHLLEANLRLVVSLAKRYTGR---GMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + +L Q+LGR T E+A+ Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKE 402 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I ++ + S D+ + GDS + +D + + + + L+ ++ Sbjct: 403 MDITPEKVLEIQQYAR--EPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 460 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL ERE V+ L + + L EIG V V R+ Q+ S+ + +LR Sbjct: 461 QSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLR 515 >UniRef50_D2RM33 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM33_ACIFE Length = 589 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 111/235 (47%), Gaps = 14/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K L + + LV A R R + DL+Q G +GL+ AVE++D +G F+ Sbjct: 348 GDNAKKCLSEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIKAVEKFDYNKGFKFS 404 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + ++ + QL QELGR T E+A+ + Sbjct: 405 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEEIAKEMD 464 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVME 184 + + R++ + S + E DS + +D + +P + L++++ + Sbjct: 465 VSVERVREIQKIAQ--EPVSLETPIGEEEDSHLGDFIEDQEAPSPADAASYTLLQEQLGK 522 Query: 185 AI-ETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + E L RE+ VL L + L+E+G V R+ Q+ ++A+++LR+ Sbjct: 523 VLQEHLSARERRVLELRFGLMDGRTRTLEEVGQYFGVTRERIRQIEAKALRKLRS 577 >UniRef50_P52324 RNA polymerase sigma factor rpoD n=83 Tax=Bacteria RepID=RPOD_CAUCR Length = 652 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 409 REARQAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 465 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+ Sbjct: 466 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEK 525 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L + + R++L + S + + DS + +D P+ + SNLR+ Sbjct: 526 LAMPLEKVRKVLKIAK--EPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETT 583 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 584 TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 638 >UniRef50_B2V7P9 RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY Length = 590 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 13/229 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L + + LV A + R ++ DL+Q G IGL+ AV++YD +G F+TYA Sbjct: 352 KQVLVKANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKYDYKKGFKFSTYAT 408 Query: 73 QRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 IR A+ + + +P + ++ + L QELGR T E+A++ G+ Sbjct: 409 WWIRQAITRAIADQARTIRIPVHMIETINKLLRISRTLVQELGREPTPEEIAKKAGMPAD 468 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 R++L + S + +S + +D +P Q +L LR ++ E + T Sbjct: 469 KVRKILRTSQ--DPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQALRLQLDEVLST 526 Query: 189 LPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L ERE+ VL + E L+++G V R+ Q+ ++A+++LR Sbjct: 527 LSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLR 575 >UniRef50_Q1QBP8 RNA polymerase sigma factor n=8 Tax=Gammaproteobacteria RepID=Q1QBP8_PSYCK Length = 648 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+ K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 404 AKARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 460 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL QE+GR T E+ ER Sbjct: 461 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGER 520 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L +D A R++L + S + + DS + +D +P+ + LR+ Sbjct: 521 LEMDEAKVRKVLKIAK--EPISMETPIGDDEDSHLGDFIEDGTISSPVDDATAAGLREAT 578 Query: 183 MEAIETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + L ERE VL + + ++ L+E+G +V R+ Q+ ++A+++LR Sbjct: 579 RDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 633 >UniRef50_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A975_9BACT Length = 631 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 115/240 (47%), Gaps = 13/240 (5%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 +++ E K + + + LV A + R + DL+Q G +GL+ AVE+++ Sbjct: 322 TNVHIREAHQAKTEMVEANLRLVISIAKKYTNR---GLSFLDLIQEGNMGLMKAVEKFEY 378 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ + + +P + +V Q QL QE G T Sbjct: 379 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPE 438 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSN 177 EVA+ + + + +Q++ Q S + D S +D ENP S Sbjct: 439 EVADEMNLPVERVQQIMKMAQ--QPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSL 496 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 LR+++++ +++L ERE+ VL+L + L+E+G +V R+ Q+ ++A++++R Sbjct: 497 LREKIIDVLDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMR 556 >UniRef50_D0LP36 RNA polymerase sigma factor n=9 Tax=Bacteria RepID=D0LP36_HALO1 Length = 697 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 112/232 (48%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+T Sbjct: 457 ERAKSELVEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYKRGYKFST 513 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ + L QELGR T E+AER+ + Sbjct: 514 YATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLVQELGREPTPEEIAERMEL 573 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + R++L + S + E DS + +D +P ++ NL ++ + Sbjct: 574 PLDKVRKVLKIAK--EPISLETPIGEEEDSHLGDFIEDKSVTSPSDAVISVNLAEQTRKV 631 Query: 186 IETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL RE+ VL + + + L+E+G EV R+ Q+ ++A+++LR Sbjct: 632 LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 683 >UniRef50_C6XRI0 RNA polymerase sigma factor n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRI0_HIRBI Length = 683 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 113/235 (48%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E + K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 440 REARVAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 496 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+ Sbjct: 497 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAEK 556 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 LG+ + R++L + S + + DS + +D P+ + SNLR+ Sbjct: 557 LGLPLEKIRKVLKIAK--EPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETT 614 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 615 TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 669 >UniRef50_A0L5T1 RNA polymerase sigma factor n=3 Tax=Bacteria RepID=A0L5T1_MAGSM Length = 683 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 112/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 440 RRANQAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEWRRGYK 496 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ QE+GR T E+AER Sbjct: 497 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMVQEMGREPTPEEIAER 556 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R++L + S + + DS + +D +P + + SNLR Sbjct: 557 MSMSLEKVRKVLKIAK--EPISLETPVGDEEDSHLGDFIEDKSMLSPSEHAIMSNLRDTT 614 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE+ VL + + + L+E+G V R+ Q+ ++A+++LR Sbjct: 615 GRVLQTLTSREEHVLRMRFGIGLPTDHTLEEVGKQFNVTRERIRQIEAKALRKLR 669 >UniRef50_C8NZE6 RNA polymerase sigma factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 14/235 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G+ + L + LV A + R + DL+Q G +GL+ AVE++D +G F Sbjct: 215 DGLEARRILISANLRLVVSIAKKYVGR---GMLFLDLIQEGNMGLVKAVEKFDYTKGFKF 271 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + L Q LGR T E+A + Sbjct: 272 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRIQRSLVQTLGREPTAEEIAAEM 331 Query: 125 -GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 I R++ S + E DS + +D +P + + L++ + Sbjct: 332 ENITPEKVREIQKIAL--DPVSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQLLKEEI 389 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +E L ERE+ VL L + E L+E+G V R+ Q+ ++A+++L+ Sbjct: 390 KMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLK 444 >UniRef50_B9CNX8 RNA polymerase sigma factor n=3 Tax=Actinobacteria (class) RepID=B9CNX8_9ACTN Length = 455 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 13/233 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G+ K L + LV A R R + DL+Q G +GL+ AVE++D +G F+ Sbjct: 214 GLDAKQQLISANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIRAVEKFDYTKGFKFS 270 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + ++ + QL Q+LGR+ T E+ +G Sbjct: 271 TYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPTPEEIGAEMG 330 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVME 184 + R++ + + S + E DS + +D P DS LR+++ + Sbjct: 331 MSPDRVREIQKISQ--EPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAASDSMLREQLEQ 388 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++ L +RE+ V+ + L+E+G V R+ Q+ S+ + +LR Sbjct: 389 VLDGLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTLAKLR 441 >UniRef50_A5UQ16 RNA polymerase sigma factor n=3 Tax=Chloroflexi (class) RepID=A5UQ16_ROSS1 Length = 541 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 14/240 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + L Q + LV A + R ++L DL+Q G +GL+ AVE++D +G F Sbjct: 300 QGKTAREDLTQANLRLVVSVAKKYIGR---GLQLLDLIQEGNVGLIRAVEKFDYRKGFKF 356 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + + + ++ QELGR T+ E++ L Sbjct: 357 STYATWWIRQAITRAIADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRAL 416 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 GI + R + + + S + + DS + +D + P LR++V Sbjct: 417 GIPVDKVRSIRKTSL--EPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVE 474 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT-KLGK 238 + + L ERE+ VL L + E L+E+G V R+ Q+ +A+++LR +LGK Sbjct: 475 QVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGK 534 >UniRef50_A9W0B8 RNA polymerase sigma factor n=15 Tax=Alphaproteobacteria RepID=A9W0B8_METEP Length = 718 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 475 REARQAKKEMIEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 531 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+ Sbjct: 532 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEK 591 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L + + R++L + S + + DS + +D P+ + SNLR+ Sbjct: 592 LAMPLEKVRKVLKIAK--EPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETT 649 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 650 TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 704 >UniRef50_A8ZUC3 RNA polymerase sigma factor n=10 Tax=Deltaproteobacteria RepID=A8ZUC3_DESOH Length = 738 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 109/234 (46%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 K L + + LV A + R ++ DL+Q G +GL+ AV++++ +G F Sbjct: 496 RAKASKSELIRANLRLVVSIAKKYTNR---GLQFLDLIQEGNVGLMKAVDKFEYRRGYKF 552 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + L QE G + E+AE++ Sbjct: 553 STYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQERGYEPSPEEIAEKM 612 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 I + R++L + S + E DS + +D + P + + NL ++ Sbjct: 613 EIPLEKVRRVLKIAR--EPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMNLSEQTR 670 Query: 184 EAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + TL RE+ VL + + + L+E+G V R+ Q+ ++A+++LR Sbjct: 671 KVLATLTPREEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLR 724 >UniRef50_P46400 RNA polymerase sigma factor rpoD n=5 Tax=Alphaproteobacteria RepID=RPOD_RHOCA Length = 674 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 431 KEARQAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 487 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ E+GR T E+AE+ Sbjct: 488 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEK 547 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L + + R+++ + S + + DS + +D PL + NL++ Sbjct: 548 LQMPLEKVRKVMKIAK--EPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETT 605 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 606 TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 660 >UniRef50_Q83BB6 RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU Length = 698 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+ K + + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 453 AKSRRAKKEMIEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYK 509 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + Q+ QE G AT E+ R Sbjct: 510 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRR 569 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + R++L + S + E DS + +D E+P+ + L + Sbjct: 570 MDMPEEKVRKVLKIAK--EPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEAT 627 Query: 183 MEAIETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E + TL RE VL + + ++ L+E+G +V R+ Q+ ++A+++LR Sbjct: 628 REILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 682 >UniRef50_Q0EWY1 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT Length = 660 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K + + + LV A + R + DL+Q G IGL+ AVE+++ +G F+T Sbjct: 409 RQAKREMIEANLRLVISIAKKYTNR---GLGFLDLIQEGNIGLMKAVEKFEWRRGYKFST 465 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ + Q+ QE+GR T E+AE L + Sbjct: 466 YATWWIRQAITRSIADQARTIRIPVHMIETINKMMRVSRQIAQEIGREPTPEELAEHLEL 525 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + Q+L + S + + DS + +D ENPL + + L + +E Sbjct: 526 PVEKVLQILEVAK--EPVSLETPIGDDEDSQLGDFVEDDNAENPLDSTIGAALAEATLEV 583 Query: 186 IETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +E L +RE+ VL + + + L+E+G V R+ Q+ ++A+++LR Sbjct: 584 LENLTDREQKVLRMRFGIGMNTDHTLEEVGKQFGVTRERIRQIEAKALRKLR 635 >UniRef50_P33452 RNA polymerase sigma factor rpoD n=130 Tax=Proteobacteria RepID=RPOD_AGRT5 Length = 684 Score = 299 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 16/242 (6%) Query: 3 SLYTAEGVMDK---HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERY 59 S+ + + + + LV A + R ++ DL+Q G IGL+ AV+++ Sbjct: 434 SMVQKGEREARIAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKF 490 Query: 60 DALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNAT 116 + +G F+TYA IR A+ + + +P + ++ + Q+ E+GR T Sbjct: 491 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPT 550 Query: 117 ETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLD 175 E+AE+L + + R++L + S + + DS + +D P+ + Sbjct: 551 PEELAEKLAMPLEKVRKVLKIAK--EPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQ 608 Query: 176 SNLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKR 231 +NLR+ + +L RE+ VL + + + L+E+G V R+ Q+ ++A+++ Sbjct: 609 ANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK 668 Query: 232 LR 233 L+ Sbjct: 669 LK 670 >UniRef50_C9KNX0 RNA polymerase sigma factor n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A + L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 131 AGDEEAQKRLAEANLRLVVSIAKRYVGR---GMLFLDLIQEGNLGLIKAVEKFDYNKGYK 187 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL Q+LGR T E+A+ Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPTPEEIAKE 247 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I + R+++ + S + E DS + +D P L++++ Sbjct: 248 MEIGVDRVREIMKIAQ--EPVSLETPIGEEEDSHLGDFIEDQDAPAPADAASFMLLKEQL 305 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL RE+ VL L + + L+E+G V R+ Q+ ++A+++LR Sbjct: 306 EDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLR 360 >UniRef50_D1C1P9 RNA polymerase sigma factor n=6 Tax=Chloroflexi RepID=D1C1P9_SPHTD Length = 538 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 G + + L + + LV A + R + + DL+Q G +GL+ AVE++ +G F Sbjct: 297 RGDIARKKLTEANLRLVVSVAKKYGGR---GMSMLDLVQEGNLGLIRAVEKFQHHKGFKF 353 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + + + +L+QELGR T E+A + Sbjct: 354 STYATWWIRQAITRAIADQARTIRIPVHMVEQINRLIRTSRRLQQELGREPTSEEIAAEM 413 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 G+ R++L + + S + E DS + +D + P L+++V Sbjct: 414 GLPPDKVREILKISQ--EPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAASLKLLKEQVD 471 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + +L +RE+ VL L + + L+E+G V R+ Q+ ++A+++LR Sbjct: 472 DVLGSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKALRKLR 525 >UniRef50_C4LJ07 RNA polymerase sigma factor n=115 Tax=Bacteria RepID=C4LJ07_CORK4 Length = 621 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K+ L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 379 HDGRKAKNHLLEANLRLVVSLAKRYTGR---GMAFLDLIQEGNLGLIRAVEKFDYTKGYK 435 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + +L Q+L R T E+A Sbjct: 436 FSTYATWWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQRELLQDLSREPTPEELARE 495 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I ++ + S D+ + GDS + +D + + + + L+ ++ Sbjct: 496 MDITEDKVLEIQQYAR--EPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 553 Query: 183 MEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + ++TL ERE V+ L + L EIG V V R+ Q+ S+ + +LR Sbjct: 554 QDVLKTLTEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLR 608 >UniRef50_P17531 RNA polymerase sigma factor rpoD n=70 Tax=Bacteria RepID=RPOD_MYXXA Length = 708 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 465 RRAERAKSELVEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYKRGYK 521 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L QE+GR T E+AE+ Sbjct: 522 FSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEK 581 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R++L + S + E DS + +D +P +++ NL ++ Sbjct: 582 MELPLDKVRKVLKIAK--EPISLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQT 639 Query: 183 MEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + TL RE+ VL + + + L+E+G EV R+ Q+ ++A+++LR Sbjct: 640 RKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 694 >UniRef50_C8R064 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R064_9DELT Length = 555 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K+ L Q + LV A + R ++L DL+Q G IGL+ AVE+++ +G F+T Sbjct: 314 REAKNRLVQSNLRLVVSVAKKYAGR---GLQLLDLVQEGNIGLMKAVEKFEYRRGYKFST 370 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + + + + +++ GR T E+AE LG+ Sbjct: 371 YATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEYQRQHGREPTPEEMAEHLGV 430 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 DIA + +L + S D DS + +D +P + + +L+ + Sbjct: 431 DIAKVKSILKIAK--EPLSLDTPVGSGEDSFLSDFIEDADSTSPDEATIYDSLQDNLARV 488 Query: 186 IETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE++VL L + +L L+E+G V R+ Q+ ++A+K+L+ Sbjct: 489 LKTLTPREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEAKALKKLK 540 >UniRef50_Q1NY91 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY91_9DELT Length = 540 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K+ L Q + LV A + R ++L DL+Q G IGL+ AVE+++ +G F+T Sbjct: 300 QEAKNRLVQANLRLVVSVAKKYAGR---GLQLLDLIQEGNIGLMKAVEKFEYRRGYKFST 356 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + + + + +++ GR T E+A+ LG+ Sbjct: 357 YATWWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGV 416 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 ++A + +L + S D DS + +D + +P + + NL+ + Sbjct: 417 EVAKVKSVLKIAK--EPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYENLQSNLRRV 474 Query: 186 IETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE++VL L + +L L+E+G V R+ Q+ ++A+K+L+ Sbjct: 475 LKTLSPREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLK 526 >UniRef50_D1CB24 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB24_THET1 Length = 463 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 13/237 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 EG K L + LV A + R + L DL+Q G IGL+ A +++D +G Sbjct: 219 RKEGEGAKCKLIEANTRLVVSIAKKYLGR---GLSLLDLIQEGNIGLMRAADKFDYTRGY 275 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P V ++ + +L+QELG T +++ Sbjct: 276 KFSTYATWWIRQAVTRAIADQSRTIRLPVHVCETVSKIHKTSQKLQQELGHEPTIEQLSS 335 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQR 181 LG+ + Q+ + S + E GDS + +D NP+Q+ + LR++ Sbjct: 336 ELGMPMKKVVQIQQASKF--PVSLEAPIGEDGDSMLGDFLEDVHVLNPVQKAANDILREQ 393 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + ++ LP +E+ VL L + + L+E+G + RV Q+ A++RLR Sbjct: 394 INSVLQNLPPKERKVLELRFGLVDGKCRTLEEVGNEFAITRERVRQIECTALRRLRE 450 >UniRef50_C1F1D9 RNA polymerase sigma factor n=3 Tax=Acidobacteria RepID=C1F1D9_ACIC5 Length = 597 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 115/232 (49%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+T Sbjct: 353 EQAKRELIEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 409 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ + QL QELGR T E+A R+ I Sbjct: 410 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQELGREPTSEEIARRMDI 469 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 +A R++L + S + E DS + +D Q +P + ++ NL++ + Sbjct: 470 PVAKVRKVLKIAQ--EPISLETPIGEEEDSHLGDFIEDSQAVSPSEAVISVNLKEYTSQV 527 Query: 186 IETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL RE+ V+ + + E L+E+G +V R+ Q+ ++A+++LR Sbjct: 528 LRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLR 579 >UniRef50_C7GZY7 RNA polymerase sigma factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 13/237 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y + H L + + LV A + DL+Q G +GL+ AV+++D + Sbjct: 203 YKQDYNKAMHQLCEANLRLVVSIAK---NHKDRGMHFLDLIQEGNLGLMKAVDKFDVDRN 259 Query: 65 TAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR A+ + + +P + ++ + L QELGR E+A Sbjct: 260 FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIHKLTRISRTLLQELGREPKPEEIA 319 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQ 180 + + I R +L + + S ++ E DS + D + +PL S LR Sbjct: 320 KEMDITTEKVRDILRISQ--EPVSLEKPIGEEEDSHLGDFIPDTEVPSPLDVAFSSMLRD 377 Query: 181 RVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++E + TL ERE+ VL L + ++ L+E+G +V R+ Q+ S+AI++L+ Sbjct: 378 ELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLK 434 >UniRef50_Q5GSP3 RNA polymerase sigma factor n=6 Tax=Wolbachia RepID=Q5GSP3_WOLTR Length = 649 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 111/241 (46%), Gaps = 14/241 (5%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 + E K + + + LV A + R + L DL+Q G IGL+ AV+++D Sbjct: 402 TQKHEREVSEAKQGMIKANLRLVVSIAKKYSNR---GLALLDLIQEGNIGLMKAVDKFDY 458 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TY +R ++ + + +P + ++ +A+ +L E+GR T Sbjct: 459 KRGYKFSTYGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKLTHEMGREPTLE 518 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSN 177 E++ LG+ + R+++ S D + + +D + P + ++ Sbjct: 519 ELSMELGMPLERIRKVMKIAR--DPVSLDAPTGKDDSSTFGDCIEDKRVSKPEDAAILTD 576 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQ-----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 LR + TL +E+ ++ + + +E L+EIG + +V R+ Q+ S+A+++L Sbjct: 577 LRCITTNLLATLTPKEERIIRMRFGLGKDCKEHTLEEIGCIFKVTRERIRQVESKALRKL 636 Query: 233 R 233 + Sbjct: 637 K 637 >UniRef50_Q1ATP3 RNA polymerase sigma factor n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATP3_RUBXD Length = 366 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 110/243 (45%), Gaps = 13/243 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + + K L + + LV A + + R V DL+Q G IGL+ A E++D Sbjct: 118 LAKAISRGCKRSKDKLVEANLRLVVSIAKKYRNR---GVSFLDLIQEGNIGLIRAAEKFD 174 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 +G F+TYA IR A+ + + +P + + + ++ Q LGR T+ Sbjct: 175 YRKGFKFSTYATWWIRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALGREPTD 234 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH-GDSIELVTDDHQRENPLQQLLDS 176 EVAE LG+ + + ++ + + S + + S+ +D P + +S Sbjct: 235 EEVAEELGVPVEEVLRLQEISQ--RSISLETPVGDDESSSLGDFLEDASAVTPTDAVSES 292 Query: 177 NLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 L+ + EA++ LPERE+ ++ + + L+E+G ++ RV Q+ + + L Sbjct: 293 LLKLHLREALDELPERERQIIEMRFGMKDDRPRTLEEVGREFDITRERVRQIQMKTLNLL 352 Query: 233 RTK 235 R + Sbjct: 353 REQ 355 >UniRef50_C7NC70 RNA polymerase sigma factor n=6 Tax=Bacteria RepID=C7NC70_LEPBD Length = 392 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 13/234 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 K L + + LV A + R +++ DL+Q G +GL+ AVE+++ +G F Sbjct: 151 GEEEAKQKLIESNLRLVVSIAKKHTNR---GLKMLDLIQEGNMGLMKAVEKFEYEKGFKF 207 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P + ++ + + QE G+ T E+AE+L Sbjct: 208 STYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKL 267 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + + +L N S + E + +D + NP L++++ Sbjct: 268 ELPVEKVKSILEM--NQDPISLETPVGSEEDSELGDFVEDDKFANPYDATTRILLKEQLD 325 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E ++TL ERE++VL Y + L+E+G + V R+ Q+ +A+++LR Sbjct: 326 EVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRKLR 379 >UniRef50_A9F3S6 RNA polymerase sigma factor n=21 Tax=Bacteria RepID=A9F3S6_SORC5 Length = 639 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 114/232 (49%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G F+T Sbjct: 399 ERAKAELVEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYKRGYKFST 455 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ + L QE GR T E+AE++ + Sbjct: 456 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMEL 515 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + R++L + S + E DS + +D +P + +++ NL ++ + Sbjct: 516 PLDKVRKVLKIAK--EPISLETPIGEEEDSHLGDFIEDKSVISPAEAVINMNLAEQTRKV 573 Query: 186 IETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE+ VL + + + L+E+G EV R+ Q+ ++A+++LR Sbjct: 574 LKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLR 625 >UniRef50_Q3AWQ6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=Q3AWQ6_SYNS9 Length = 451 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 12/232 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + Q + LV A + R + DL+Q G +GL+ A E++D +G F+ Sbjct: 212 GRRAKEKMVQSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 268 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + L QE GR TE E+AE + Sbjct: 269 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESME 328 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + I R + +EE + + D ENP Q + + LR+ + Sbjct: 329 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD--IENPEQDVAKNLLREDLEGV 386 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL RE+ VL L Y + L+EIG + +V R+ Q+ ++A+++LR Sbjct: 387 LATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLR 438 >UniRef50_A5UPS4 RNA polymerase sigma factor n=4 Tax=Chloroflexaceae RepID=A5UPS4_ROSS1 Length = 402 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+G + L Q + LV A + + + DL+Q G IGL+ AVE++D +G Sbjct: 160 AQGNEARQHLIQANLRLVVSIAKKYTSY---GLTMMDLVQEGNIGLMRAVEKFDYTKGHK 216 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + +V + +L+Q + R T E+A+ Sbjct: 217 FSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADA 276 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRV 182 +GI R+ L + S + + G+ + +D + P + S LR+++ Sbjct: 277 MGISSTKVRRTLEAS--MHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQL 334 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E ++ LPERE+ ++ L Y + L+E+G + R+ Q+ + A+++LR Sbjct: 335 EEVLQKLPERERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLR 389 >UniRef50_B8GCU9 RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD Length = 398 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 14/243 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 +G + + + LV A R + R + L DL+Q G +GLL A+E++D +G Sbjct: 153 KEQGDEARQKMAAANLRLVVSIAKRYRDR---GLPLLDLIQEGSLGLLRAIEKFDHTKGY 209 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA I+ A+ L + +P + + A QL Q LGR T+TE+A Sbjct: 210 KFSTYATWWIKQALSRALADQSRLVRLPVHLGETLNRIQSARRQLTQSLGREPTDTELAN 269 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQR 181 LG+ R++ S E DS + D + LRQ+ Sbjct: 270 HLGMSEEKLRELRRTAQ--DPVSLATPVGEEADSTLADFIPDPHALDADDAAASGMLRQQ 327 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT-KL 236 + A++ L ERE+ VL L Y + L+E+G V RV Q+ +A+++LR +L Sbjct: 328 IAAALDQLSERERRVLELRYGLADGQPRTLEEVGKAFGVTRERVRQIEVKALRKLRHPRL 387 Query: 237 GKL 239 GKL Sbjct: 388 GKL 390 >UniRef50_C9LM97 RNA polymerase sigma factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM97_9FIRM Length = 394 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 13/224 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K + + LV A + R + DL+Q G +GLL AV+++D +G F+T Sbjct: 159 AEAKKEMANANLRLVVSIAKKYPGR---GMPFLDLIQEGNMGLLKAVDKFDYTKGYKFST 215 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + VP + ++ + QE GR AT E+A+ + Sbjct: 216 YATWWIRQAITRSIADQARTIRVPVHMVETINKMNRVGRHFLQEHGREATNEELAKEMET 275 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + R+ S + E DS + +D + +P + + R+++ + Sbjct: 276 SVEKIREAKKAAQ--DPISLETPIGEKEDSHLGDFIEDQKTASPEDEAAATMRREQIHQL 333 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLH 225 +ETL EREK V+ L Y + L+E+G V R+ Q+ Sbjct: 334 LETLTEREKGVIALRYGIDDGTQRTLEEVGKYFGVTRERIRQIE 377 >UniRef50_P18182 RNA polymerase principal sigma factor hrdA n=6 Tax=Actinomycetales RepID=HRDA_STRCO Length = 396 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 105/235 (44%), Gaps = 13/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + K L + + LV A R R + + DL+Q G +GL+ AVE++D +G F+ Sbjct: 156 GRLAKRRLIEANLRLVVSVAKRYVGR---GLTMLDLVQEGNLGLIRAVEKFDYARGYKFS 212 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR AM L + VP V V + ++ QE G T EVA L Sbjct: 213 TYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPQEVAAHLD 272 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + ++L + S E D ++ + +D +P++ LRQ + Sbjct: 273 LAPERVGEVLRLAQ--EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEA 330 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + TL ERE+ V+ L Y L+EIG + V R+ Q+ S+ + +LR Sbjct: 331 VLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 385 >UniRef50_B9L102 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B9L102_THERP Length = 509 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 13/236 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 +G + L + + LV A R R + L DL+Q G +GL+ AV+++ +G Sbjct: 266 RRDGEAARRKLTEANLRLVVSIAKRYTGR---GLTLLDLIQEGNLGLMRAVDKFQTHKGF 322 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ L +P + V++ QL QELGR T +E+A Sbjct: 323 KFSTYATWWIRQAITRALADHARTIRLPVHLVETLNRVSRVARQLTQELGREPTTSELAA 382 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 + + + R++L S + E ++ +D + PL S LR++ Sbjct: 383 AVNMPLDRLRELLQAAQ--DPVSLEAPVGQEEESTLGDFLEDERAVAPLDAAALSLLREQ 440 Query: 182 VMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 V + TL ERE+ VL + + E L+E+G V RV Q+ ++A+++LR Sbjct: 441 VQSLLATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVTRERVRQIEAKALRKLR 496 >UniRef50_A6G972 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=A6G972_9DELT Length = 547 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 112/239 (46%), Gaps = 13/239 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 E K L + + LV A + R ++ DL+Q G IGL+ AV++++ +G Sbjct: 302 ARREREAAKAELVEANLRLVVSIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEYQRG 358 Query: 65 TAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR A+ + + VP + + ++ + QL QE GR T E+A Sbjct: 359 YKFSTYATWWIRQAITRAISDQARTIRVPVHMIESINKLIRTTRQLVQEFGREPTHQEIA 418 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQ 180 E++ + + R +L + S + E GD S+ + +D +P +++ +L Sbjct: 419 EKMNMPVEKVRSILRIAK--EPISLETPLGEDGDSSLGDLIEDKNALDPGSGVVERHLGD 476 Query: 181 RVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 A+ +L RE+ +L L + + L+E+G V R+ Q+ ++A+ +LR Sbjct: 477 ETRRALASLTPREEKILRLRFGIGEASDHTLEEVGRDFSVTRERIRQIEAKALSKLRKA 535 >UniRef50_C0R506 RNA polymerase sigma factor n=4 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 108/233 (46%), Gaps = 14/233 (6%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K + + + LV A + R ++L DL+Q G IGL+ AV+++D +G F+T Sbjct: 411 SEAKQEMIKANLRLVVSIAKKYSKR---GLDLLDLIQEGNIGLMKAVDKFDYKRGYKFST 467 Query: 70 YAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 Y +R ++ + + +P + ++ +A+ ++ E+GR T E++ L + Sbjct: 468 YGTWWVRQSITRAIPEQSKVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVELTM 527 Query: 127 DIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + R+++ S + + + +D + P + ++LR Sbjct: 528 PLERIRKVMKIAR--DPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNV 585 Query: 186 IETLPEREKLVLTLYY-----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL +E+ +L + + +E L+E+G + V R+ Q+ ++A+++L+ Sbjct: 586 LATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 638 >UniRef50_Q9Z7F0 RNA polymerase sigma factor rpoD n=15 Tax=Chlamydiales RepID=RPOD_CHLPN Length = 572 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 106/231 (45%), Gaps = 11/231 (4%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K + + + LV A + R + DL+Q G +GL+ AVE+++ +G F+T Sbjct: 315 QEAKKEMVESNLRLVISIAKKYTNR---GLSFLDLIQEGNMGLMKAVEKFEYRRGYKFST 371 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + +V + +L E G+ T E+AE LG+ Sbjct: 372 YATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGL 431 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 R++ + + S +D E+P + S L+ ++ E + Sbjct: 432 TPDRVREIYKIAQHPISLQAEVGEGSES-SFGDFLEDTAVESPAEATGYSMLKDKMKEVL 490 Query: 187 ETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +TL +RE+ VL + + L+E+G+ V R+ Q+ ++A++++R Sbjct: 491 KTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMR 541 >UniRef50_C7H329 RNA polymerase sigma factor n=2 Tax=Faecalibacterium prausnitzii RepID=C7H329_9FIRM Length = 461 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 111/238 (46%), Gaps = 13/238 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 +G+ + SL + + LV A + + ++ DL+Q G IGL+ A E++D +G Sbjct: 218 RRDGLNARRSLSEANLRLVVSIAKK---HVGHNLAFLDLIQEGNIGLIKAAEKFDCDRGF 274 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P + + QA QL + G T E+A+ Sbjct: 275 RFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAK 334 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQR 181 + + + R++ + S + E D S+ D E P + + + Q+ Sbjct: 335 AMDMSVERVREIQRMAQ--EPASLESPVGEEEDSSLGDFVADENAEAPGKAADRAMVAQQ 392 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + +A+++L RE+ V+ L + L+E+G V RV Q+ ++AI++L ++ Sbjct: 393 INQALKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSR 450 >UniRef50_P61540 RNA polymerase sigma factor rpoD n=20 Tax=Bacteria RepID=RPOD_LEPIC Length = 585 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 11/231 (4%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + + LV A R R + DL+Q G IGL+ AV++++ +G F+T Sbjct: 345 SQAKKELVKANLRLVVSIAKRYANR---GMHFFDLIQEGNIGLIKAVDKFEYKKGYKFST 401 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + VP + +V + QE GR+ E+AERLG Sbjct: 402 YATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGW 461 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + + + EE + + D + E P+ S L +++ + + Sbjct: 462 PVQKVKMVKNVAREPISLEIPVGSEEDSE-LGDFIPDTEVETPVNAAASSILAEQIRQVL 520 Query: 187 ETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TLP RE+ V+ + + L+E+G +V R+ Q+ ++A++RLR Sbjct: 521 HTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLR 571 >UniRef50_Q6AQ51 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila RepID=Q6AQ51_DESPS Length = 534 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K +L + + LV + R R ++ DL+Q G IGL+ AVE++D +G F+T Sbjct: 294 KEAKEALVRANLRLVISVSKRFVNR---GLQFSDLIQEGNIGLMKAVEKFDYRRGFKFST 350 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR ++ + + +P + + + E R + EVA +LG Sbjct: 351 YATWWIRQSITRGIADQGRTIRLPVHMIETINRMLRVSKDFYLEEHREPSVEEVAGQLGT 410 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 ++ + L S D + G++ + D P + ++L++ + + Sbjct: 411 EVDKVKSALKIAK--DAISLDTPVGDDGETYLGDFIVDKNCLGPDGFAMVASLKECLSQV 468 Query: 186 IETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +L RE+ VL + Y E L+E+G V R+ Q+ +QAI +L+ Sbjct: 469 LSSLSPREEKVLKMRYGILEKREYTLEEVGRCFNVTRERIRQIEAQAISKLK 520 >UniRef50_B0U099 RNA polymerase sigma factor n=18 Tax=Francisella RepID=B0U099_FRAP2 Length = 578 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 15/233 (6%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 K + + + LV EA + R + D++Q G IGL+ AV+++D +G F+TY Sbjct: 339 QAKKEMIEANLRLVVSEAKKYTNR---GLHFLDIIQEGNIGLMKAVDKFDYRKGFKFSTY 395 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL-GI 126 A IR A+ + + VP + +V + Q+ QE GR ATE E+ E + Sbjct: 396 ATWWIRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEEEIIEYTPNM 455 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 +++L ++ S + + DS + +D +P++ NLR+ + E Sbjct: 456 TKDKLKKILNISH--TPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENLREAIKEL 513 Query: 186 IET-LPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 I+T L ERE VL + + + L+E+G V R+ Q+ ++A+++L+ Sbjct: 514 IDTGLTEREAKVLMMRFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLK 566 >UniRef50_Q9ZMY3 RNA polymerase sigma factor rpoD n=59 Tax=Epsilonproteobacteria RepID=RPOD_HELPJ Length = 681 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 14/234 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K+ + + + LV A R R + DL+Q G IGL+ AV++++ +G F+T Sbjct: 440 DRAKNKMAKSNLRLVVSIAKRFTSR---GLPFLDLIQEGNIGLMKAVDKFEHEKGFKFST 496 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA I+ A+ + + +P + + + + + QE G+ VAE +G+ Sbjct: 497 YATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGL 556 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + + ++ T + S + D +D + + ++ +L+ ++ Sbjct: 557 SLDKVKNVIKVTK--EPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESV 614 Query: 186 IETLPEREKLVLTLYYQE-----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++ L EREK V+ + + + L+EIG L V RV Q+ S AIK+LR+ Sbjct: 615 LDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRS 668 >UniRef50_B7K1V2 RNA polymerase sigma factor n=13 Tax=cellular organisms RepID=B7K1V2_CYAP8 Length = 379 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 12/232 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + + LV A + R + DL+Q G +GL+ A E++D +G F+ Sbjct: 140 GRKAKDKMVHSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 196 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + L QE+ R TE E+A R+ Sbjct: 197 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRME 256 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + I R + +EE + + D ENP ++ + LR+ + Sbjct: 257 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ENPEDEVSKNLLREDLENV 314 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 315 LDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366 >UniRef50_B1WS32 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WS32_CYAA5 Length = 416 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 12/232 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + + LV A + R + DL+Q G +GL+ A E++D +G F+ Sbjct: 177 GRKAKDKMVHSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 233 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + L QE+ R TE E+A R+ Sbjct: 234 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRME 293 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + I R + +EE + + D E P ++ + LR+ + Sbjct: 294 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENV 351 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 352 LDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 >UniRef50_C0R030 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0R030_BRAHW Length = 587 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 113/241 (46%), Gaps = 13/241 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + K + + + LV A + R + DL+Q G IGL+ AV++++ +G Sbjct: 343 RRKIAQAKDHIVKANLRLVIAIAKKYVNR---GLHFFDLVQEGNIGLIKAVDKFEYKKGY 399 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + VP + +V + + Q Q+ GR + E+A+ Sbjct: 400 KFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVQRVLRQYMQQHGREPSIQEIAK 459 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQR 181 L + + + S + + D+ + + +D + E+P LR++ Sbjct: 460 ALSWPESRVKSVRNVAK--DPVSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILRKQ 517 Query: 182 VMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + +++LP+RE+ V+ + + L+E+G V +V R+ Q+ ++AI+RLR + Sbjct: 518 IDSILDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLRAQSK 577 Query: 238 K 238 K Sbjct: 578 K 578 >UniRef50_P27785 RNA polymerase sigma factor rpoD n=102 Tax=Bacteria RepID=RPOD_STRAU Length = 317 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 13/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G M K L + + LV A R R + + DL+Q G +GL+ AVE++D +G F+ Sbjct: 77 GRMAKRRLIESNLRLVVSVAKRYVGR---GLTMLDLVQEGNLGLIRAVEKFDYARGYKFS 133 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR AM L + VP V V + ++ QE G T EVA L Sbjct: 134 TYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAVHLE 193 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + ++L + S E D ++ + +D +P++ + + Sbjct: 194 LTPERVLEVLRLAQ--EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCEHLEA 251 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + TL ERE+ V+ L Y L+EIG + V R+ Q+ S+ + +LR Sbjct: 252 VLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDH 306 >UniRef50_P26683 RNA polymerase sigma factor rpoD n=19 Tax=cellular organisms RepID=RPOD_ANASP Length = 390 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 12/232 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + Q + LV A + R + DL+Q G +GL+ A E++D +G F+ Sbjct: 151 GRRAKDKMVQSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 207 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + L QE+GR TE E+A R+ Sbjct: 208 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRME 267 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + I R + +EE + + D E P Q+ + LR+ + + Sbjct: 268 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDG--ETPEDQVSKNLLREDLEKV 325 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +++L RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 326 LDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 377 >UniRef50_P74565 RNA polymerase sigma factor rpoD n=23 Tax=cellular organisms RepID=RPOD_SYNY3 Length = 425 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 12/229 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K + Q + LV A + R + DL+Q G +GL+ A E++D +G F+TYA Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 245 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + + + L QE+ R TE E+AE++ + I Sbjct: 246 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTI 305 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 R + +EE + + D E P ++ + LR+ + ++T Sbjct: 306 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVSKNLLREDLENVLDT 363 Query: 189 LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 364 LSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412 >UniRef50_B5YKM1 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKM1_THEYD Length = 479 Score = 284 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 106/228 (46%), Gaps = 12/228 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K+ L R + LV + A R + L DL++ G IGL+ AV+++ +G F+TYA Sbjct: 237 KNELITRNLRLVVNIAKNYVGR---GLPLLDLIEEGNIGLMKAVDKFKYEKGFKFSTYAT 293 Query: 73 QRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 IR A+ L + VP + V +A +L Q+LGR E+AE+LG+ + Sbjct: 294 WWIRQAITRALIDQTKTIRVPVHMMEFYNRVTKASRELTQQLGREPNNEEIAEKLGVPVR 353 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 ++ + +E D +P+ + + L + + ++TL Sbjct: 354 KVEEVFRAIQ--DPIGLQTPIGDEDTELEDFIGDKTSPSPVSEAERTELSEHIQRILKTL 411 Query: 190 PEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +E+ V+ + + + L+E+G L + RV Q+ ++A+++L+ Sbjct: 412 TPKEEKVIKMRFGIGEDRDHTLEEVGRYLSITRERVRQIETKALRKLK 459 >UniRef50_A8S2D4 RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A8S2D4_9CLOT Length = 406 Score = 284 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 102/236 (43%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 V L + + LV A R R + DL+Q G +GL+ AVE++D +G Sbjct: 164 EGDVEAGRKLVEANLRLVVSIAKRYTGR---GMSFLDLVQEGNLGLMKAVEKFDYAKGYR 220 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 +TYA ++ ++ L + +P + ++ +A L +LGR + EVAE Sbjct: 221 LSTYATWWVKQSITRSLADQSRTIRLPVHMVEAVNKIRRAQRSLSVKLGREPSMEEVAEE 280 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWR-EEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + + +++ + S + +E G ++ D + + LR+ + Sbjct: 281 VNMSGKRVAELIQASG--DTVSLETPVGDEEGSNLGDFVADDANASTEDKAESFLLREEI 338 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++ L RE+ V+ L + L L+E+G V R+ Q+ + A+++LR Sbjct: 339 DSMLQGLNPREREVIILRFGLETGHPLTLEEVGKRFNVTRERIRQIETAALRKLRN 394 >UniRef50_C1E4E8 Predicted protein n=2 Tax=Micromonas RepID=C1E4E8_9CHLO Length = 595 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 12/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K+++ Q + LV A R + S+ DL+Q G +GL+ E++D +G F+ Sbjct: 342 GKRAKNAMIQANLRLVVSIAKRYANK---SMSFQDLIQEGCVGLIRGAEKFDFKRGYKFS 398 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + +++ Q+ +LGR+ T E+A+ + Sbjct: 399 TYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQMVLKLGRDPTHEELADAME 458 Query: 126 IDIADYRQMLLDTNNSQLFSY--DEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + +Q+ + S + E ++E D E+P + L++ + Sbjct: 459 MTVEKIKQIKKASLVPISLSQTVNNSNGEDKRTVEDTLIDDYTEHPEGETGKVLLKEDLE 518 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + TL RE+ VL L Y + L+EIG V V R+ Q+ ++A+++LR Sbjct: 519 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 573 >UniRef50_P38023 RNA polymerase sigma factor rpoD1 n=7 Tax=cellular organisms RepID=RPOD1_SYNE7 Length = 399 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 12/229 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K + Q + LV A + R + DL+Q G +GL+ A E++D +G F+TYA Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYA 219 Query: 72 VQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ + + +P + + + L QE+GR TE E+A R+ + I Sbjct: 220 TWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTI 279 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 R + +EE + + D E P ++ + LR+ + + T Sbjct: 280 EKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADG--ETPEDEVAKNLLREDLEGVLST 337 Query: 189 LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L RE+ VL L Y + L+EIG + V R+ Q+ ++A+++LR Sbjct: 338 LSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386 >UniRef50_P52323 RNA polymerase sigma factor rpoD n=32 Tax=Borrelia RepID=RPOD_BORBU Length = 631 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 13/233 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + + LV A + R + DL+Q G IGL+ AVE+++ +G F+T Sbjct: 389 QHAKDQLIKANLRLVVSIAKKYANR---GLHFFDLVQEGNIGLIKAVEKFEYKRGFKFST 445 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + VP + + + L Q LG++ T+ E+++RLG Sbjct: 446 YATWWIRQAITRSISDQARTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELSDRLGW 505 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEA 185 ++ + + + + S + E DS + +D +NP L+ ++ Sbjct: 506 ELKKVKTVKSVSR--EPVSLETPIGEEEDSVLSDFIEDKAIKNPANHTSFVVLQDQIRAI 563 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + TLPERE+ V+ + + E L L+E+G V R+ Q+ S+A++RL+ Sbjct: 564 LGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKN 616 >UniRef50_D2R2I8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Planctomycetaceae RepID=D2R2I8_9PLAN Length = 545 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 13/241 (5%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 + Y K L + LV A + + R + DL+Q G GL+ AV++++ Sbjct: 282 TNEYRENYDAAKRVLSAGNLRLVVSIAKKYRNR---GLSFLDLIQEGNTGLMRAVDKFEY 338 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ + + VP + +V QL QELGR T Sbjct: 339 ARGYKFSTYATWWIRQAITRAIADQSRTIRVPVHMIDTMSKVRAVTRQLVQELGREPTPE 398 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSN 177 EVA G+ + D R +L Q S D+ +H DS DH+ E+PL Sbjct: 399 EVARVAGLTLDDARCVLKMAR--QPLSLDQPVGDHDDSYFGEFLADHREEDPLYDTHQQA 456 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 L+ ++ EA++ L RE+ +L L Y L+E+G + V RV Q+ ++A+++L+ Sbjct: 457 LKHQIEEAMQGLNYREREILRLRYGLTDGYAYTLEEVGKIFSVTRERVRQIETKAVRKLQ 516 Query: 234 T 234 Sbjct: 517 Q 517 >UniRef50_Q0RDY7 RNA polymerase sigma factor n=5 Tax=Actinomycetales RepID=Q0RDY7_FRAAA Length = 373 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K L + LV A + R + L DL+Q G +GL+ AVE++D +G Sbjct: 131 KDGHAAKQQLVSANLRLVVSVAKKYSGR---GMTLLDLVQEGNLGLIRAVEKFDYAKGYK 187 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L + +P V ++ + QL LGR T+ E+A Sbjct: 188 FSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALE 247 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L + I ++ S + + GDS + +D +P ++ + Sbjct: 248 LDMPIEQVVELRRYAQ--DTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEI 305 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + L RE+ V+ L + ++ L E+G L + R+ Q+ ++ LR Sbjct: 306 ENVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRK 361 >UniRef50_Q1J156 RNA polymerase sigma factor n=13 Tax=Bacteria RepID=Q1J156_DEIGD Length = 532 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 15/237 (6%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G + L + + LV A + R + DL+Q G GL+ AVE+++ + Sbjct: 287 EDGAAARQGLIEANLRLVVSIAKKYTGR---GLGFLDLIQEGNQGLIRAVEKFEYRRRYK 343 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL+QEL R T E+AE Sbjct: 344 FSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREPTYEEIAEA 403 Query: 124 L--GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQ 180 + G D A ++ + + S + + DS D ++P+ + L + Sbjct: 404 MGPGWDAAKVEEVQKVSQ--EPVSLETPIGDEKDSFYGDFIPDENLDSPVDNAAKTLLSE 461 Query: 181 RVMEAIETLPEREKLVLTLY----YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +A+ L ERE LVL E L+E+G V R+ Q+ ++A+++L+ Sbjct: 462 ELEKALSKLTEREALVLKFRKGLVDGREHTLEEVGQRFNVTRERIRQIENKALRKLK 518 >UniRef50_UPI0001C317B8 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317B8 Length = 367 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + K + + + LV A + + + DL+Q G +GL+ A E++D +G Sbjct: 126 RGDLDAKQKMVESNLRLVVSIAKNYRNQ---GLPFLDLIQEGTLGLVRAAEKFDYRKGFK 182 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L + +P V ++ +A +L ELGR T E+A+ Sbjct: 183 FSTYATWWIRQAIARALADKARTIRIPVHVVEKLNKIGRAERKLVTELGREPTAEEIADV 242 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 GID + + S ++ + +S D + E+P ++ + ++ + Sbjct: 243 TGIDPEEVDSIKRSAQA--PVSLEKPVGDEEESEFGQFIADERAESPYERAAEILTKEAL 300 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 EA+E L RE+ VL L Y L E+G V R+ Q+ +Q++K+L++ Sbjct: 301 REALENLSYRERRVLELRYGLGGEHPRTLDEVGRTFNVTRERIRQIENQSLKKLQS 356 >UniRef50_Q2J784 RNA polymerase sigma factor n=6 Tax=Actinomycetales RepID=Q2J784_FRASC Length = 422 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K L + LV A + R + L DL+Q G +GL+ AVE++D +G Sbjct: 180 KDGHAAKQQLVSANLRLVVSVAKKYSGR---GMTLLDLVQEGNLGLIRAVEKFDYAKGYK 236 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L + +P V ++ + QL LGR T+ E+A Sbjct: 237 FSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALE 296 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L + I ++ S + + GDS + +D +P ++ + Sbjct: 297 LDMPIEQVVELRRYAQ--DTVSLETSVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEI 354 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + L RE+ V+ L + ++ L E+G L + R+ Q+ ++ LR Sbjct: 355 ENVLGGLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRK 410 >UniRef50_Q02AX1 RNA polymerase sigma factor n=2 Tax=Acidobacteria RepID=Q02AX1_SOLUE Length = 518 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 116/236 (49%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 AE K L + + LV A + R + L DL+Q G IGL+ A ++++ +G Sbjct: 274 AEAERAKKDLVEANLRLVVSVAKKYVNR---GLHLLDLIQEGNIGLMRAADKFEYRRGYK 330 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + + + +A +LE+ELGR T E+ R Sbjct: 331 FSTYATWWIRQAITRAIADQSRTIRIPVHMNESMNKFLRATRELEKELGRTPTNDEIGRR 390 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I + +++ + S + G+S + + +D +P+ +++SN+R Sbjct: 391 MDIPVEKVQKLKTISR--DPVSLETPVGRDGESALGDLIEDRWVGSPVDAVIESNVRDET 448 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++TL +E+ V+ + + E L+EIG +V R+ Q+ ++A+++LR Sbjct: 449 AGILKTLSPKEEKVIRMRFGIGCEREHTLEEIGQEFDVTRERIRQIEAKALRQLRA 504 >UniRef50_B3DXQ3 RNA polymerase sigma factor n=5 Tax=Chlamydiae/Verrucomicrobia group RepID=B3DXQ3_METI4 Length = 287 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 113/240 (47%), Gaps = 10/240 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + Q + LV A + + L DL+ G IGL+ AV+R+D +G Sbjct: 34 QQGDQEARRQMIQANLRLVVKIAHDYAN---SGLPLPDLISEGNIGLMKAVDRFDPSKGG 90 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +TYA I+ ++ L ++ +P + ++ + QL + LGR+ T+ E+AE Sbjct: 91 KLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKIAKMRRVAMQLSEILGRDPTDEELAE 150 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 LG+ ++ EE G ++ + D +P Q +LD NL+ + Sbjct: 151 ELGMSTTKVAELRTIAIRPASLDATVGEEEDGTALGELVKDESAASPDQSVLDQNLKNTI 210 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ME + L ERE+ +L+L + E + L+EIG V R+ QL + A++++R +L K Sbjct: 211 MELLPKLDERERKILSLRFGLEGNEQMTLEEIGKEFHVTRERIRQLQNIALRKIRKELEK 270 >UniRef50_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 13/241 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + LV A R R + L DL+Q G IGL+ AVE++D +G Sbjct: 96 KEGDTEALQRFVRSNLRLVVSIAKRYVGR---GLSLLDLIQEGNIGLMRAVEKFDWRRGY 152 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P + + + QL QELGR T E+AE Sbjct: 153 RFSTYATWWIRQAITRAIADQGRTIRLPVHMTDSITRYHRTTTQLAQELGRQPTPEEIAE 212 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQR 181 + + Q++ + S D+ E + S+ + D ++P + +S +R+ Sbjct: 213 AMSVQPEKIAQIVRAAQRA--VSLDQPLSEEDETSLGDLIADELAQSPEELAEESLMRRD 270 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + E +E L RE+LVL L Y E L E+G +L + RV Q+ ++A+++LR Sbjct: 271 IAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRKLRRIAR 330 Query: 238 K 238 + Sbjct: 331 E 331 >UniRef50_O83506 RNA polymerase sigma factor rpoD n=11 Tax=Bacteria RepID=RPOD_TREPA Length = 611 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + LV A + R + DL+Q G IGL+ AVE+++ +G F+T Sbjct: 371 KKAKDKLINANLRLVVSIAKKYTNR---GLLFFDLVQEGNIGLIKAVEKFEYRKGYKFST 427 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + VP + +V + QL Q+ GR ++ E+A++L Sbjct: 428 YATWWIRQAITRSISDQARTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCW 487 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + +Q+ + S + E D S+ D ENP + L++ V Sbjct: 488 TVEKVKQVKSVAR--EPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSI 545 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + LP RE VL + + + L+E+G +V R+ Q+ ++A+KRLR Sbjct: 546 LSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLR 597 >UniRef50_B3CQ43 RNA polymerase sigma factor n=2 Tax=Orientia tsutsugamushi RepID=B3CQ43_ORITI Length = 615 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + K + + LV H A R + DL+Q G IGL+ AV++Y+ L G F+T Sbjct: 364 RVAKKKMVESNTRLVVHVAKPYVNR---GLPFLDLIQEGNIGLMKAVDKYNYLLGYKFST 420 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 A +R ++ + + +P + ++ + Q+ ELG T +E+AE+L + Sbjct: 421 CATWWVRQSISRAVADQARTIRIPVHMADTISKIVRVSKQMHNELGYEPTASEIAEKLSM 480 Query: 127 DIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 I ++++ + S + E G + +D P+++ + +LR+ A Sbjct: 481 PIDKVKKVMRIAK--EPVSLENPIGEEDGSCLSDFIEDKNAILPIEEAIKFSLRETTTRA 538 Query: 186 IETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + TL RE+ VL L + L L+E+G +V RV Q+ ++A+++L+ Sbjct: 539 LSTLTAREERVLRLRFGIGLPTDYTLEEVGGEFKVTRERVRQIEAKALRKLK 590 >UniRef50_Q2JLG8 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JLG8_SYNJB Length = 320 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 12/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A G K L + + LV A + R V DL+Q G IGL+ A E+++ +G Sbjct: 73 AAGERAKRELVRANLRLVVSIAKKYLNR---GVPFLDLIQEGTIGLIRAAEKFEYERGYK 129 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR + + ++ +P + +V + +L + L R T+ E+AE Sbjct: 130 FSTYAYWWIRQGITRAVANQGRLVRIPVHMVEKLNQVKRIRRELTETLNRRPTQAEIAEA 189 Query: 124 LGIDIADYRQMLLDT-NNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 L I +L Q S E + + +D P Q+ L + Sbjct: 190 LEISPDKLDALLTLLEAGRQTLSLHTPVGKEEDRELMQLIEDANSLTPESQMDLHLLSAQ 249 Query: 182 VMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + E +E L RE+ +L L Y + L EIG + + RV Q+ ++A+++LR Sbjct: 250 LEEMLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLFGLSRERVRQIQARAMRKLR 305 >UniRef50_C1CW22 RNA polymerase sigma factor n=3 Tax=Deinococci RepID=C1CW22_DEIDV Length = 547 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 109/237 (45%), Gaps = 15/237 (6%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G + L + + LV A + R + DL+Q G GL+ AVE+++ + Sbjct: 302 EDGANARQGLIEANLRLVVSIAKKYTGR---GLGFLDLIQEGNQGLIRAVEKFEYRRRYK 358 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + QL+QEL R AT E+AE Sbjct: 359 FSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLTRTARQLQQELSREATHEEIAEA 418 Query: 124 L--GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSI-ELVTDDHQRENPLQQLLDSNLRQ 180 + G D A ++ + + S + + DS D ++P++ + L + Sbjct: 419 MGPGWDAAKVEEVQKVSQ--EPVSLETPIGDEKDSFYGDFIPDENLDSPVENAAKTLLSE 476 Query: 181 RVMEAIETLPEREKLVLTLY----YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + +A+ L ERE +VL E L+E+G V R+ Q+ ++A+++L+ Sbjct: 477 ELEKALSKLTEREAMVLKFRKGLVDGREHTLEEVGQRFSVTRERIRQIENKALRKLK 533 >UniRef50_Q13K37 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13K37_BURXL Length = 628 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + ++ + + LV A + + + + L DL+Q G IGL+ AV+R++ +G F+T Sbjct: 388 QDARRAMIEANLRLVVSVAKKY---VQSGMPLLDLVQEGNIGLMKAVDRFEYRRGFKFST 444 Query: 70 YAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR ++ + VP + V + G++ QE GR A +E+A RLG+ Sbjct: 445 YATWWIRQSVSRAIADYGRTIRVPVHMADAMHRVKRVAGEMRQETGRPARSSELAARLGM 504 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 R + T Q S D E D ++ + +D PL LL ++LR + A Sbjct: 505 SEEKVRSVQRVTR--QPVSLDVPIGEEADTTLGEMVEDSSTLAPLDALLQADLRVAIDAA 562 Query: 186 IETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + L RE V+ L + E L+E+G +V RV Q+ ++A+++LR Sbjct: 563 LGVLTPREAKVIKLRFGVDAVSEHTLEELGDQFDVTRERVRQIQNKALQKLR 614 >UniRef50_C5B6H5 RNA polymerase sigma factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B6H5_METEA Length = 531 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 13/233 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + +L + LV A + R + + DL+Q G IGL+ A+E++D +G F+T Sbjct: 289 RKARDTLVTSNLRLVFSVAKKYTNRP---LPILDLVQEGNIGLMRAIEKFDYRRGWKFST 345 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA+ I+ ++ + +P + A ++ + +L ELGR + E+A+ L I Sbjct: 346 YAIWWIKQSISRSIADHGRTIRLPVHLHEKAAKIDRTAARLRAELGRPPSPPELAQALDI 405 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 D+ +++ + + S D E GD + +D + +P+ + L+ V +A Sbjct: 406 DVRQVERLMNMSR--ETVSLDLPVGEDGDVRFGDLVEDEKAPDPVGLADLAKLKDAVSDA 463 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + LPERE+ ++ + + + L+EIG + RV Q+ S+AI+RLR+ Sbjct: 464 VGDLPEREQTIIRMRFGIGYADQMTLEEIGQHFRISRERVRQVESKAIQRLRS 516 >UniRef50_D2AWC8 RNA polymerase sigma factor n=3 Tax=Streptosporangineae RepID=D2AWC8_STRRD Length = 452 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + + + LV A + R + L D++Q G +GL+ AVE++D +G Sbjct: 210 EDGRRAKDHMLEANLRLVVSVAKKYTDR---GMALLDVVQEGNLGLIRAVEKFDYTKGYK 266 Query: 67 FTTYAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA+ IR A+ +P V ++++ + Q LGR T E+A Sbjct: 267 FSTYAMWWIRQAIQRGFADSARTIRLPVHVLEMLSKLSRVERDMHQRLGREPTPEELAVE 326 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRV 182 L ++L + Q S + E G+ +I + +D + + L +++ Sbjct: 327 LDKTPDQIEELLRTSR--QPISLNATIGEDGETTIGDLIEDVDSPEASEVVDRQLLGEQL 384 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + L RE ++ L + + L EIG L + R+ QL +++ +LR Sbjct: 385 RGVLGNLSPREAKIMALRFGLVDGKPHTLDEIGKHLGLTRERIRQLEKESLSKLR 439 >UniRef50_D1VBD5 RNA polymerase sigma factor n=1 Tax=Frankia sp. EuI1c RepID=D1VBD5_9ACTO Length = 424 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K L + LV A + R + L DL+Q G +GL+ AVE++D +G Sbjct: 182 RDGEAAKQQLVSANLRLVVSVAKKYSGR---GMTLLDLVQEGNLGLIRAVEKFDYAKGYK 238 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L + +P V ++ + QL LGR T+ E+A Sbjct: 239 FSTYATWWIRQAIGRALADQARTIRIPVHVVEQINKITRLQRQLVSTLGREPTDEELALE 298 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L + + ++ S + + GDS + +D +P ++ + Sbjct: 299 LDMPLEQVVELRRYAQ--DTVSLETTVGDDGDSVLGDFIEDSDATSPADAASYGAMQDEI 356 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + L RE+ V+ L + ++ L E+G L + R+ Q+ ++ LR Sbjct: 357 DHVLGNLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRK 412 >UniRef50_D1TN62 RNA polymerase sigma factor n=2 Tax=Burkholderia sp. CCGE1002 RepID=D1TN62_9BURK Length = 663 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 108/230 (46%), Gaps = 13/230 (5%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 K + + + LV A + R + DL+Q G IGL+ AV++++ +G F+TY Sbjct: 424 QAKREMIEANLRLVISIAKKYVNR---GMHFLDLIQEGNIGLMKAVDKFEYRRGWKFSTY 480 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A +R A+ L + +P + + ++ + ++ Q+ GR A +A+R+ + Sbjct: 481 ATWWVRQAVTRSLADQARTIRIPVHMMESINKLNRISREILQQTGREAHPAVLAQRMEVP 540 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 R ML Q S + + D ++ V +D +P + +NLR + A+ Sbjct: 541 EEKVRAMLKIGR--QPLSLETPVGDEADTTLSDVIEDPMATSPADAAVQANLRAAINTAL 598 Query: 187 ETLPEREKLVLTLYYQEEL----NLKEIGAVLEVGESRVSQLHSQAIKRL 232 + L RE VL + + + L+E+G ++ R+ Q+ S+A+++L Sbjct: 599 DALSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIESKAMRKL 648 >UniRef50_Q2GE94 RNA polymerase sigma factor n=2 Tax=Neorickettsia RepID=Q2GE94_NEOSM Length = 620 Score = 279 bits (714), Expect = 8e-74, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 102/251 (40%), Gaps = 30/251 (11%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 KH + + + LV A + R + DL+Q G IGL+ AV+++D +G F+TY Sbjct: 360 AAKHRMVEANLRLVISIAKKYTNR---GMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTY 416 Query: 71 AVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A R A+ + P + A +V + +L GR T E+A L I Sbjct: 417 ATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKIS 476 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 ++ L + + + S +D + + +L NLR+ + EA+ Sbjct: 477 PDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIEDKNAVSQVDVVLSKNLRKVLDEALA 536 Query: 188 TLPEREKLVLTLYYQE------------------------ELNLKEIGAVLEVGESRVSQ 223 L RE+ +L + L L+++G + V R+ Q Sbjct: 537 MLSPREEKILRYRFGLCNSVHSPEDEHYLKSLKIDLNRGTNLTLEQVGILYNVTRERIRQ 596 Query: 224 LHSQAIKRLRT 234 + S++++++R+ Sbjct: 597 IESKSLRKMRS 607 >UniRef50_Q6AK94 RNA polymerase sigma factor n=3 Tax=Deltaproteobacteria RepID=Q6AK94_DESPS Length = 447 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 12/236 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y+ + K ++ + + LV A R + + L DL+Q G +GL+ AV R+D +G Sbjct: 204 YSRSIEVAKDTMIRANLRLVVSIAKRYMHQ---GLTLADLIQEGNLGLMRAVFRFDYTKG 260 Query: 65 TAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR A+ + + +P + +A L +ELGR T E++ Sbjct: 261 NKFSTYASWWIRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGREPTPLEIS 320 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 + + + +L + + S + + ++ ++ + ++P + + + L R Sbjct: 321 KTTNLPMDKILSILEASR--EPISLETPVGDDDSTLGDFLENQESQSPYEAVQNRELSGR 378 Query: 182 VMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 V E + TL +RE+ ++ L + E L+EIG V R+ Q+ +A+ RLR Sbjct: 379 VTEILSTLSDREEKIIRLRFGIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNRLR 434 >UniRef50_B1ZU80 RNA polymerase sigma factor n=6 Tax=Verrucomicrobia RepID=B1ZU80_OPITP Length = 353 Score = 276 bits (707), Expect = 5e-73, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 14/242 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + + + LV A+ + + L DL+ G IGL+ AVER+D +G Sbjct: 77 RKGDKAARDHMIKANLRLVVKIAMDYK---DFGLPLLDLISEGNIGLIKAVERFDPRKGG 133 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +TYA I+ ++ L ++ +P + ++ + L +ELGR T+ E+A Sbjct: 134 KLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISKMRRTAMALTEELGREPTDEELAI 193 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS--IELVTDDHQRENPLQQLLDSNLRQ 180 L I + + + + + S D E GDS + D +P + L + NL Sbjct: 194 ELQIPTSKVAHL--KSVSVRPASLDAPVGEEGDSATFGEIVGDDNAVSPFEGLREKNLNS 251 Query: 181 RVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + + +L ERE ++ L + +EL L+E+G V R+ QL A+ ++R + Sbjct: 252 DLHAMVASLDEREAEIIRLRFGLDGKDELTLEEVGRRFHVTRERIRQLEYLALSKMRKAM 311 Query: 237 GK 238 K Sbjct: 312 AK 313 >UniRef50_Q7NB90 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=Q7NB90_MYCGA Length = 644 Score = 275 bits (706), Expect = 6e-73, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 102/242 (42%), Gaps = 20/242 (8%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + L + LV A + R ++ DL+Q G IGL+ A+ +++ G Sbjct: 390 ETREYAINQLVTSNLRLVTSIAKKYLNR---GLDFVDLIQEGSIGLMKAISKFNYKLGNK 446 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + + +P + ++ + L Q+LGR+ T E+ E Sbjct: 447 FSTYATWWIRQAITRAIADQARTVRIPVHMVETINKLIKTERMLTQQLGRDPTLEELTEA 506 Query: 124 L-----GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSN 177 + G + N + S D+ +S D P + Sbjct: 507 MGGQVNGFTPKKVADIKKL--NQEPVSLDKPIGHDEESQFVDFVKDRDILKPDEYTEKLI 564 Query: 178 LRQRVMEA-IETLPEREKLVLTLYYQ-----EELNLKEIGAVLEVGESRVSQLHSQAIKR 231 + + + E I TL ++E+ ++ + Y +++ L+E+G V R+ Q+ S+A+++ Sbjct: 565 VTEHINELFINTLTKKEEQIIRMRYGLHPWHQQMTLEEVGQKFNVTRERIRQIESKALRK 624 Query: 232 LR 233 L+ Sbjct: 625 LK 626 >UniRef50_Q3J9H0 RNA polymerase sigma factor n=2 Tax=Nitrosococcus oceani RepID=Q3J9H0_NITOC Length = 579 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + K + + + LV A + + R + DL+Q G IGL+ AV+++D +G F Sbjct: 337 QAQRAKAQMVEANLRLVVSVAKKYRNR---GLTFLDLIQEGNIGLMKAVDKFDYHRGYKF 393 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + +P V ++ +A QL QE GR E+AERL Sbjct: 394 STYAHWWIRQAITRAIDDQSRTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERL 453 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVM 183 + +M Q S + + DS + + +D Q NP++ + + L+ Sbjct: 454 ALSEQQIHRMHEIAK--QPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQTGAQ 511 Query: 184 EAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + L RE V+ + + + L E+ ++ R+ Q+ +QA+ +LR Sbjct: 512 QLLAALSPREAQVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRR 566 >UniRef50_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCN6_9BACT Length = 377 Score = 274 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 14/241 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 A + + + + LV A + + + DL+ G IGL+ AVER+D +G Sbjct: 107 QAGEKEARDLMIKSNLRLVVKIAHDYK---DFGLPVLDLISEGNIGLVKAVERFDPDKGG 163 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +TYA I+ ++ L ++ +P + + + L +ELGR T+ E+AE Sbjct: 164 KLSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISRMRKMALMLTEELGREPTDQELAE 223 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS--IELVTDDHQRENPLQQLLDSNLRQ 180 L + + + + + + S + E G+S + D P + L + +LR Sbjct: 224 MLEMPVNKVSHL--KSVSVRPTSLNAPVGEDGNSTEFGEIVGDDNAPTPYENLHEKSLRG 281 Query: 181 RVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + E I+ L +RE ++ L + L L+E+G V ++ RV QL + A+ ++R + Sbjct: 282 DLHEMIDGLEDREAEIIRLRFGLNGDSPLTLEEVGQVFDITRERVRQLQNIALSKMRKIM 341 Query: 237 G 237 Sbjct: 342 A 342 >UniRef50_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 274 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 11/235 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + + LV A R R V L DL+Q G IGL+ VE++DA +G Sbjct: 347 RDGRKAKERMVTANLRLVVSIAKRYSNR---GVALQDLIQEGSIGLIRGVEKFDAERGFR 403 Query: 67 FTTYAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR ++ + +P V + + L+ ELGR +E E+ E Sbjct: 404 FSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICES 463 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 +GID A YR ++ + N + + E + LR+ + Sbjct: 464 VGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESL-IAPEERAEENCSRDTLRESIE 522 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + L RE+ V+ + + L+E+G+ V R+ Q+ S+A+K+LRT Sbjct: 523 KVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESKALKKLRT 577 >UniRef50_P0A2E9 RNA polymerase sigma factor for flagellar operon n=246 Tax=cellular organisms RepID=FLIA_SALTI Length = 239 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 224/239 (93%), Positives = 236/239 (98%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAV+RYD Sbjct: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYD 60 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQA+GQLEQELGRNATETEV Sbjct: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEV 120 Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 AERLGI +A+YRQMLLDTNNSQLFSYDEWREEHGDSIELVT++HQ+ENPL QLL+ +LRQ Sbjct: 121 AERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQ 180 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 RVM+AIE+LPERE+LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL Sbjct: 181 RVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 >UniRef50_D1C9N7 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9N7_SPHTD Length = 359 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 13/237 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + L + + LV A + + + + L DL+Q G IGL+ AVERYD G Sbjct: 119 ERAKAAREKLIRHNLRLVVSIAKKYR---TSGLPLIDLIQEGNIGLMTAVERYDPELGYR 175 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + ++ VP + +V + QLEQ GR AT+ E+A+ Sbjct: 176 FSTYATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQA 235 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 L +D+ Q + S D+ E G+S I + D + + Q + S +R ++ Sbjct: 236 LDLDVERIEQARSAI--PRTSSLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSAIRDQI 293 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 ++E+L ERE+ VLTL + + L EI + RV Q+ +A+ +LR Sbjct: 294 RRSLESLSERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLRNS 350 >UniRef50_Q31QR8 RNA polymerase sigma factor rpoD4 n=59 Tax=Cyanobacteria RepID=RPOD4_SYNE7 Length = 311 Score = 273 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 10/239 (4%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 N G K + + + LV A + Q + +EL DL+Q G +GL AVE++D Sbjct: 64 NQAVLQAGQRAKTKMLKANLRLVVSVAKKYQNQ---GLELLDLIQEGSLGLERAVEKFDP 120 Query: 62 LQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 G F+TYA IR +M + +P V + + +L +L R + Sbjct: 121 ALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQLKRLPSRA 180 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNL 178 E+AE L + + D +L + ++ + + D + P+ + Sbjct: 181 EIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQ 240 Query: 179 RQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +++ + L ERE+ VL L + E+ L EIG L V R+ Q+ ++A+++LR Sbjct: 241 HEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLR 299 >UniRef50_Q1AV06 RNA polymerase sigma factor n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AV06_RUBXD Length = 304 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 10/245 (4%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 ++ + L ++ + LV A + + + +DL+Q G IGL+ AVE++D Sbjct: 56 LSRRAKKGDRKARQKLIEKNLRLVVSVAKKYRGY---GLPFEDLIQEGNIGLMKAVEKFD 112 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 +G F+TYA IR A+ + + VP + R+V++ +L EL R T+ Sbjct: 113 PERGFRFSTYATWWIRQAVQRAVADKGRTIRVPVHMTEKIRKVSRTFNELSLELEREPTD 172 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSN 177 E+A RL D+ D R + ++ EE + +D + + +L Sbjct: 173 EEIARRLEWDVEDVRLTISAMPDATSLDQPVSSEESASELGDFIEDERTSDTPDTVLKEL 232 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++ EAIE LPER + VL Y E L E+G L++ RV QL +A + L+ Sbjct: 233 ESSQLKEAIERLPERARYVLVRRYGLDDREPATLAELGDELKISRERVRQLQREAERLLK 292 Query: 234 TKLGK 238 + + Sbjct: 293 AGIRR 297 >UniRef50_D2ML80 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML80_9BACT Length = 414 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 12/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L Q + LV A R R + DL+Q G IGL+ A ER+ +G F+T Sbjct: 177 ERAKEGLVQHNLRLVVDIAKRFTGR---GMGFLDLIQEGNIGLMRAAERFQYRKGFKFST 233 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA +R +L + + VP + + + +L Q+LGR + E+A L + Sbjct: 234 YATWWVRQGILRAVADQSRTIRVPVHTTEAWQRMIKISHRLAQKLGREPSNEEIALALAV 293 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + + S+D+ + + D P + L + +R ++ + Sbjct: 294 KPERVQHTTQAFL--EPISFDQPNADGETFLGDCLPDDHASPPDEHLQEEQMRSQLHRLL 351 Query: 187 ETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 L RE+ V+ L + L+E+G +L V R+ Q+ A+K+LR Sbjct: 352 RVLTPREEQVIRLRFGIGNGQSRTLEEVGKLLNVTRERIRQIEVLAMKKLRE 403 >UniRef50_B8HRG7 RNA polymerase sigma factor n=9 Tax=Cyanobacteria RepID=B8HRG7_CYAP4 Length = 455 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 113/236 (47%), Gaps = 12/236 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 EGV K + Q + LV A + Q R +EL DL+Q G +GL AVE++D +G Sbjct: 210 QKEGVRAKEHMIQANLRLVVSVAKKYQNR---GLELLDLIQEGTLGLERAVEKFDPTKGY 266 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR + + ++ +P + ++ +A ++ QE G + ++A Sbjct: 267 RFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIAT 326 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 L + + R++L + S + + D+ + +P + ++ +L + + Sbjct: 327 ELEMTVPQVRELL--VRVPRSVSLETKVGKDKDTELGDLLETDDLSPEEMMMRESLHREL 384 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + L RE+ V+++ + +L +IG L++ RV Q+ ++A+++LR Sbjct: 385 EKLLADLTSRERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKLRQ 440 >UniRef50_B2KBW8 RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP Length = 571 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 11/230 (4%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 DK L + + LV A + + +++EL DL+Q GG+GL+ AVE+++ +G F+TY Sbjct: 332 QDKLKLIKANLRLVVSIAKK---HVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFKFSTY 388 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A IR ++ + + +P ++ ++ + + QE GR + + ++ L + Sbjct: 389 ATWWIRQSINRAIADQANTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLS 448 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 + + +L + S +E + +E +D NP D +Q V E + Sbjct: 449 MEKVKGVLKIMQDPISLSTPVGEDEDSN-LEDFIEDKAGANPTVTASDFLRKQEVSEVLN 507 Query: 188 TLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 TL ERE ++ L + L+E+G + V RV Q+ ++AI++LR Sbjct: 508 TLSEREAKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLR 557 >UniRef50_C9XJA1 RNA polymerase sigma factor n=5 Tax=Clostridium difficile RepID=C9XJA1_CLODC Length = 301 Score = 272 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 13/238 (5%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K LV A R + S+++ DL+QAG IGL+ AVE+YD +G F+TYA Sbjct: 63 AKEKFINSNYRLVVSIAKRYKR---DSIDMLDLIQAGNIGLIKAVEKYDYKKGYKFSTYA 119 Query: 72 VQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 I+ ++ + +P + + V + +L L R T E+A+ G+++ Sbjct: 120 TWWIKQSITRYIDDCENTIRIPIHLHQRINFVKKKKQELLNVLLREPTIDEIADACGLEV 179 Query: 129 ADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPL-QQLLDSNLRQRVMEAIE 187 ++L N +E +E + D ++ + ++ NL++++ E + Sbjct: 180 DKVLELLRRDKNVVSLDTPLKEDEDSSLVEFIPSDADFKDVVIHEVEQHNLKEKIEELLT 239 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR--TKLGKL 239 L E+E+ VL + + + L++IG V V R+ Q+ ++AI++LR +KL +L Sbjct: 240 GLGEQEQQVLRMRFGIDDDDPKTLEQIGKVFGVTRERIRQIEAKAIRKLRHPSKLKQL 297 >UniRef50_D1CD77 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD77_THET1 Length = 596 Score = 272 bits (697), Expect = 6e-72, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 12/241 (4%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 + AEG + + L + + LV A + R + L DL+Q G IGL+ AVE++ +G Sbjct: 248 WIAEGDIARKRLIEANLRLVVSIAKKYTGR---GITLLDLIQEGNIGLIKAVEKFRHQKG 304 Query: 65 TAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR A+ + + +P + ++AQA +L QELGR TE E+A Sbjct: 305 YKFSTYATWWIRQAITRAIADQARTIRIPVHMGEAINKIAQARRRLTQELGREPTEQEIA 364 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQ 180 LGI + R++ + + S + E D S+ DH+ P+ S LR Sbjct: 365 NYLGIPVEKIREVQKISQ--EPISLENPVGEEEDTSLGDFIQDHKAPAPMDAASQSLLRD 422 Query: 181 RVMEAIETLPEREKLVLTLYYQ---EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 ++ + ++ L ERE+ VL + + E +E+ +L V ++V Q S+ + + +L Sbjct: 423 QIDQVLKHLSERERGVLLMRFGLDCEPRPYREVAHILAVSPNQVMQAESRVLDMVAARLS 482 Query: 238 K 238 Sbjct: 483 P 483 Score = 79.1 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 20/142 (14%) Query: 111 LGRNATE-TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENP 169 L EVA L + M ++ + + E++ ++ + Sbjct: 445 LDCEPRPYREVAHILAVSPNQV--MQAESRVLDMVAARLSPEDYQMLLDRFGHLDRSPMS 502 Query: 170 LQQL-------------LDSNLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGA 212 + +D LR+ + + +P E+ ++ + + L+E+G Sbjct: 503 EESFRLKYKLTQTQLREIDQKLREALASVMLHVPAPERDMMRFRFGLDIGQPRTLEEVGR 562 Query: 213 VLEVGESRVSQLHSQAIKRLRT 234 V R+ Q+ S+A+++LR Sbjct: 563 AFGVTRERIRQIESKALRKLRR 584 >UniRef50_D2R6R0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=7 Tax=Planctomycetaceae RepID=D2R6R0_9PLAN Length = 544 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 107/232 (46%), Gaps = 13/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K L + LV A + + R + DL+Q G GL+ AV++Y+ +G F+T Sbjct: 301 EAAKRQLSSGNLRLVVSIAKKYRNR---GLSFLDLIQEGNTGLMRAVDKYEYRRGFKFST 357 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + + +P + ++ +L QELGR T EV + + Sbjct: 358 YATWWIRQAITRAIADQARTIRIPVHMIDVLSKLRNVQKKLLQELGREPTTEEVTALVDL 417 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREE-HGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + + +++L S D + S +D +NP+ + LR+R+ Sbjct: 418 PLEEVKRVLDIGR--HPVSLDRPVGDSEDSSFGEFIEDTASDNPVLCATNGILRERIDGL 475 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++TL RE+ ++ L Y L+E+G + +V RV Q+ ++A+++L+ Sbjct: 476 LKTLTWREREIIRLRYGLCDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQ 527 >UniRef50_B1AIY8 RNA polymerase sigma factor n=15 Tax=Ureaplasma RepID=B1AIY8_UREP2 Length = 448 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 27/243 (11%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K+ L+ + LV A + R ++L+DL+Q G GLL A++++D +G F+TYA Sbjct: 194 KNQLYTSNMRLVTSIAKKYLNR---GLDLEDLIQEGSSGLLKAIDKFDHEKGHKFSTYAT 250 Query: 73 QRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG---- 125 IR ++ + + +P + ++ +A L QELGR+ T E+A+ + Sbjct: 251 WWIRQSITRAIADQARQIRIPVHMVETINKLTKAERNLIQELGRDPTAEEIAQAMNKVSQ 310 Query: 126 --------IDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDS 176 I ++ N S D+ +S D + +P + Sbjct: 311 AKNQKEQLITAQKVVEIKKL--NVDPVSLDKQIGHDEESQFSDFISDDEIISPEKYTEKK 368 Query: 177 NLRQRVMEAIET-LPEREKLVLTLYYQ-----EELNLKEIGAVLEVGESRVSQLHSQAIK 230 L ++ E E L + E+ V+ + Y L+E+G L V R Q+ S+AI+ Sbjct: 369 ALNDQINEMFEKVLNDNEQRVIKMRYGLLPFERPYTLEEVGEYLGVTRERARQIESKAIR 428 Query: 231 RLR 233 +L+ Sbjct: 429 KLK 431 >UniRef50_B1VAH4 RNA polymerase sigma factor n=5 Tax=Acholeplasmataceae RepID=B1VAH4_PHYAS Length = 476 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 12/236 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + K L + LV A R R V DL+Q G +GL+ AV+++D +G Sbjct: 231 QANQAKDVLVESNYRLVVSIAKRYIGR---GVLFLDLIQEGNMGLMRAVDKFDYQKGLRL 287 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA + + + + +P + +++ +L QEL + T E+AE++ Sbjct: 288 STYATYWVIQGVTRAIADQARTIRIPVHIVETINKMSLCTRKLTQELKKKPTIEELAEKM 347 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 I R + E S+ D +P + ++ ++ + Sbjct: 348 NIPADKLRSIQYIEKKPISLEVPPAENKEDETSLGDFISDPNVLSPHEYMMKEVTQKLLD 407 Query: 184 EAIE-TLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 E +E TL ERE+ VL + Y + L+EIG + V R+ Q+ S+A++RLRT Sbjct: 408 EVLENTLTEREEKVLKMRYGFLDGKVYTLEEIGNLFGVTRERIRQIESKALRRLRT 463 >UniRef50_Q03066 RNA polymerase sigma-C factor n=22 Tax=Cyanobacteria RepID=RPSC_ANASP Length = 416 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 12/236 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 ++G+ K + + + LV A + Q R +EL DL+Q G +GL AVE++D +G Sbjct: 171 QSQGLQSKEHMIKANLRLVVSVAKKYQNR---GLELLDLVQEGTLGLERAVEKFDPTKGY 227 Query: 66 AFTTYAVQRIRGAMLDELR---SRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR + + +P + ++ +A ++ QE GR T ++A Sbjct: 228 RFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAI 287 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 L + R++L + S + + D+ + P + L+ +L++ + Sbjct: 288 ELDMTPTQVREVL--LRVPRSVSLETKVGKDKDTELGELLETDGVTPEEMLMRESLQRDL 345 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + L RE+ V+ + + +L EIG L++ RV Q+ S+A+++LR Sbjct: 346 QHLLADLTSRERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQ 401 >UniRef50_Q0SG50 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SG50_RHOSR Length = 520 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + + LV A R Q R ++L DL+Q G +GL+ AVE++D G Sbjct: 278 RDGQHAKRRFLEANLRLVVSIARRYQGR---GLDLLDLVQEGNLGLIRAVEKFDYKTGFK 334 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L + +P + ++ + +L +E GR T +E+A Sbjct: 335 FSTYATWWIRQAITRALADQSRVIRIPVHMVEQIDQLGKERARLTKETGREPTPSELATA 394 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L I + + ++ S D + DD + + + Sbjct: 395 LDTTIEHIGDLEKY--DQRVLSLDVLTDNAEHDGLDFEDDLAVV-AEEVAERRRFYETLE 451 Query: 184 EAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + L ER+ V+ L Y + L EIG + V R+ Q+ S+ +K ++ + Sbjct: 452 SVLSPLSERDAQVIRLRYGLTGSDPYTLDEIGKIYGVTRERIRQIESKLLKAMKEE 507 >UniRef50_B5Y8E5 RNA polymerase sigma factor n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8E5_COPPD Length = 360 Score = 271 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 12/241 (4%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + + L +R + LV A + + + +L+Q G IGL+ AVE++D Sbjct: 109 LAQRIEKNDAAAREELIKRNLRLVISIAKKYTNK---GLSFMELIQEGNIGLIKAVEKFD 165 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATE 117 +G F+TYA I+ A+ L + + P + + + + +L +LGR T Sbjct: 166 WRKGYKFSTYATWWIKQAITRALADQSRLIRRPVHMVEAYHQFQKKLNELYNQLGREPTV 225 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDS 176 E+AE LG L +N + S D + DS ++ D + + Sbjct: 226 QELAEALGFSEDKVL-ALKQMSNPEPQSLDATIGDQDDSRVQDFVPDTGEGAADKYFWEE 284 Query: 177 NLRQRVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 R+ + E + TL +RE+ ++ + Y E L+E+GA + RV Q+ ++A+++L Sbjct: 285 ERRRVLEEVLSTLNKREREIIEMRYGLVDGVEHTLEEVGASFNITRERVRQIETKALRKL 344 Query: 233 R 233 R Sbjct: 345 R 345 >UniRef50_D1CF84 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=D1CF84_THET1 Length = 363 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 15/237 (6%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + LV A R R + L DL+Q G IGL+ AV+++D +G Sbjct: 119 KGDTEALQRFVLANLRLVVSIAKRYVGR---GLPLLDLIQEGNIGLMRAVQKFDWRKGHR 175 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + +P + + + QL Q + R T E+AE+ Sbjct: 176 FSTYATWWIRQAITRAIGDKSREIRLPAHINEELNRINRIRQQLSQTVNREPTPEEIAEK 235 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 G R++L Q S D E DS + D + NP ++ D L+ + Sbjct: 236 AGTSPERVRELLGYLQ--QPVSLDTPVGEEADSTLGEFVPDVRA-NPEEEATDEVLKTEM 292 Query: 183 MEAIET-LPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++ L REK VL L Y +L+++G L V RV QL QA+++LR Sbjct: 293 DRVLDEVLTPREKRVLQLRYGLGDGHTYSLEKVGRELGVTRERVRQLEKQALEKLRR 349 >UniRef50_A6G031 RNA polymerase sigma factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G031_9DELT Length = 431 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 12/238 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K+ + + LV A R + L DL+Q G IGL+ AV+R+D +G F+T Sbjct: 195 RSAKNKFVKANLRLVVSIARRFNHGR---MPLQDLIQEGNIGLMKAVDRFDYRKGFRFST 251 Query: 70 YAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 Y IR A+ + + +P + +V +A +LE +LGR T E+A+ GI Sbjct: 252 YGSWWIRHAISRAIADKGRQVRLPVHMIDAYHKVNKARRELEAKLGREPTREELAQHTGI 311 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREE-HGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 +A +M + S D+ + G + +D E+P + L L ++V Sbjct: 312 ALAKIERMGTMLVD-NPISLDKPVSDADGRKMGDFLEDENAEDPGEGLEADALNEQVKRL 370 Query: 186 IETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + L E ++ + EEL LKEIG + R+ QL QA+ ++R +L +L Sbjct: 371 VSKLRPIEADIIRKRFGLIDDEELTLKEIGGQYSLSRERIRQLQEQALGKIRRELKRL 428 >UniRef50_UPI0001B5857A putative RNA polymerase sigma factor n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B5857A Length = 327 Score = 270 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 95/238 (39%), Positives = 145/238 (60%), Gaps = 2/238 (0%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 + L Y PLV++ A R+ LP V++ DL+Q+G GL++A+E++D Sbjct: 86 QFADKPDQTSRDRLVLHYAPLVKYVAGRVGTGLPTHVDVGDLVQSGIFGLVDAIEKFDPE 145 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +G F TYA+QRIRGA+LD+LRS+DWVPR+VR A+E A+A+ +L L R T+ E+A Sbjct: 146 RGLRFETYAMQRIRGAILDDLRSQDWVPRAVRSKAKETARALERLGARLHRTPTDAELAG 205 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWR--EEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 +GI + D R + + + ++ + S+ D +P+ L+D + R+ Sbjct: 206 EMGISLDDLRDFYGQLRLTSVVALEDLVAAGKDAGSLVDTLPDDGAVDPVAVLVDQDNRR 265 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++ EAI L +R+K+V++LYY E L L EIG VL V ESRVSQLH++A+ RLR KL + Sbjct: 266 QLAEAIAQLTDRDKIVVSLYYFESLTLAEIGKVLGVTESRVSQLHTRAVMRLRAKLME 323 >UniRef50_A9BJC9 RNA polymerase sigma factor n=3 Tax=Thermotogaceae RepID=A9BJC9_PETMO Length = 424 Score = 270 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 105/244 (43%), Gaps = 16/244 (6%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + + L + + LV A R + DL+Q G IGL+ AV ++D Sbjct: 171 LARRAQMGDKRAREELIKANLRLVISIAKRYVGH---GLGFLDLIQEGNIGLMKAVAKFD 227 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATE 117 +G F+TY+ IR A+ + + +P + + + + + QE G Sbjct: 228 WKKGYKFSTYSYWWIRQAITRAIADQGRTVRIPVHLVETINRMNRVVNKYIQENGEVPDL 287 Query: 118 TEVAERLGIDIADYRQMLLDTNNS----QLFSYDEWREEHGDSIELVTDDHQRENPLQQL 173 E++ + + +++L+ N S D E + ++ + D P ++ Sbjct: 288 EELSVLMDKPVDKMKEVLISAKNIFSLNAPISNDVDAEGESEVLDFI--DSDSPTPDEEG 345 Query: 174 LDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAI 229 +RQ++ I+TL +E ++L + Y ++ L+E+G V R+ Q+ S++I Sbjct: 346 RKMIIRQKMEMIIDTLSPKEAMILKMRYGFVDGKQKTLEEVGEFFNVTRERIRQIESKSI 405 Query: 230 KRLR 233 ++L+ Sbjct: 406 RKLK 409 >UniRef50_A6CE36 RNA polymerase sigma factor n=6 Tax=Planctomycetales RepID=A6CE36_9PLAN Length = 588 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 104/233 (44%), Gaps = 13/233 (5%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 K L + LV A + + R + DL+Q G GL+ VE+Y+ +G F+TY Sbjct: 319 EAKQQLSGGNLRLVVSIAKKYRNR---GLSFLDLIQEGNAGLMRGVEKYEYRRGYKFSTY 375 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A IR A+ + +P + ++ + Q+ QE GR T E+A+ +G+ Sbjct: 376 ATWWIRQAITRAVADHARTIRIPVHMFQSISTLKARSEQIRQETGREPTMEELADSVGLG 435 Query: 128 IADYRQMLLDTNNSQLFSYDEWREE-HGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + + +++ S D E S +D +P + L+ ++ + Sbjct: 436 VEETERIMKTWK--HPISLDTPVGESEDSSFGDFLEDGHESSPADAAMREMLKDKIEHVL 493 Query: 187 ETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 ++L RE+ ++ L Y L+E G + +V R+ Q+ S+A+++L+ + Sbjct: 494 KSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQ 546 >UniRef50_B7K407 RNA polymerase sigma factor n=27 Tax=Cyanobacteria RepID=B7K407_CYAP8 Length = 328 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 12/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + + + LV A + Q R ++E DL+Q G +GL VE++D +G Sbjct: 87 EQGNRAKRKMIEANLRLVVAIAKKYQKR---NMEFLDLIQEGSLGLERGVEKFDPTKGYK 143 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + +P + ++ + +L Q+LGR+AT E+A Sbjct: 144 FSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAV 203 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L I+ + R+ L Q S D ++ D+ + +P Q + LRQ + Sbjct: 204 LEIEPSQIRECLSMAR--QPISLDVRVGDNQDTELSELLEDHEASPDQYITQELLRQDLK 261 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 +E L +++ VL L + +EL+L +IG L + RV QL QA+ +LR + Sbjct: 262 NLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRRR 317 >UniRef50_A9AU99 RNA polymerase sigma factor n=2 Tax=Chloroflexi (class) RepID=A9AU99_HERA2 Length = 391 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 13/234 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + L Q + LV A + + DL+Q G IGL+ AVE++D +G F+ Sbjct: 151 GNEGRRKLTQANLRLVVSVAKKYIG---NHMSFMDLIQEGNIGLMRAVEKFDYRKGNRFS 207 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + ++ + QLEQ L R AT E+A+ LG Sbjct: 208 TYATWWIRQAVTRAIAEQSRTIRLPVHLSESIAQMRRVAYQLEQALQREATPDELADALG 267 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + + ++ML + Q S ++ + G + D E PL+Q L+ + + Sbjct: 268 VSLRKVKRMLNAS--VQPVSLEQPIGKEGQGRVGEFLADDTDEAPLEQATRMMLQDELAD 325 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 A+ LP+RE+ +L L Y + L+E+GA + R Q+ ++A++ LR Sbjct: 326 ALSQLPDRERQILLLRYGLADGKRRTLEEVGAEFGITRERTRQIEAEAMRHLRQ 379 >UniRef50_B4DC14 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DC14_9BACT Length = 479 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 11/236 (4%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 + + + + + + + LV A Q R DL+Q G IGL+ AVER++ +G Sbjct: 235 WQRKALEARTEMVECNLRLVVSIAREYQNR---GQPFLDLIQEGNIGLMRAVERFEYRRG 291 Query: 65 TAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F T A IR A+ + ++ +P + ++ + Q+ QE GR+ T ++A Sbjct: 292 YKFATCATWWIRQAISRSIANQARTIRIPTHMIDLLAKLIRVQRQMTQESGRDPTAEDLA 351 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 L + + R +L EE G + +DH E+P +Q + LR++ Sbjct: 352 GELHLPLRRVRALLKMAEEPISIHTPVG-EEGGSRLGDFIEDHSVEDPSKQAAVAMLREK 410 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + TL ERE+ +L + E L+EIG +V RV Q+ ++A++++R Sbjct: 411 INAVLHTLTEREREILEQRFGLIDGRERTLEEIGRHFKVTRERVRQIEAKALRKMR 466 >UniRef50_B0M9H5 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M9H5_9FIRM Length = 347 Score = 268 bits (687), Expect = 9e-71, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 12/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A K + + LV A R + + L DL+Q G IGL+ AV+++D +G Sbjct: 103 AGSQSAKDKMINSNLRLVVSVAKRYA--AGSGMALLDLIQEGNIGLMKAVDKFDYRRGYK 160 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA+ IR ++ + + +P ++ +V+ A + +E GR E+AE Sbjct: 161 FSTYAMWWIRQSVTRAIADQARTIRIPVHMKEKMGKVSGAARKFLEENGREPNADELAEL 220 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 + I +++ + S D E D+ + D Q L +++ Sbjct: 221 MEISRDQMDEIMRLYS--DTVSLDSPVGEEEDAMLMNFVADESMPEQYQTAEQGILSEQI 278 Query: 183 MEAIETLPEREKLVLTLYYQ--EEL--NLKEIGAVLEVGESRVSQLHSQAIKRLR 233 E + L ERE+ +L L + E L+E+G V R+ Q+ +A+++L+ Sbjct: 279 NEILSELTEREQTILRLRFGFVENRIWTLEEVGREYHVTRERIRQIEGKALRKLK 333 >UniRef50_B8G577 RNA polymerase sigma factor n=4 Tax=Chloroflexus RepID=B8G577_CHLAD Length = 314 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 11/235 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A G + L + LV A R Q + L DL+Q G IGL+ AV+++DA +G Sbjct: 69 AAGEQARAQLINSNLRLVVSIARRYQGH---GLTLLDLIQEGSIGLMRAVDKFDAGRGLK 125 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR ++ + +P + +A+ +L Q+L R T E+A Sbjct: 126 FSTYATYWIRQSIGRAIADHSRTVRLPVHLGERLSRLARLRQELAQQLDREPTLEELANA 185 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 G+ + + + E+ G ++ + D + P ++ + L+ V Sbjct: 186 AGLSVEQVERAEQAGLAPTSLD-EAHTEDGGGALSEILTDPLQPTPFDEVSEGMLQADVQ 244 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 A+ L RE+ +L L Y + L++IG L + RV QL +A+++LR Sbjct: 245 AALSQLSPRERNILRLRYGLDGEPMHTLEQIGQRLRLTRERVRQLEYEALRKLRD 299 >UniRef50_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C8_CYAPA Length = 427 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 18/240 (7%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + L Q + V A + + + L DL+Q G IGL+ A ER+D +G F Sbjct: 174 KGRRARARLVQSNLRWVVSIAKKYANKHT--MPLQDLIQEGSIGLMKAAERFDLDKGFKF 231 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 TYA IR A+ L+ + +P V + + + QL LGR T E+A+ L Sbjct: 232 LTYATWWIRQAIFRSLQDQGRTIRLPVHVHDSLYLIKKTRQQLASRLGRIPTPEELADEL 291 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS------IELVTDDHQRENPLQQLLDSNL 178 I ++ + + S + S + + + P +QL + L Sbjct: 292 NIPVSRLAFITQAAS--LPISLESPISSETSSTKARNNLGDFIE-SECLQPDEQLERTML 348 Query: 179 RQRVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 R+ + + TL RE+ ++ + Y L EIG ++ + R+ Q+ A+++L+ Sbjct: 349 REDLENVLATLKARERDIIRMRYGLVDGSPKTLDEIGEIVGLTRERIRQIEQSAMRKLKA 408 >UniRef50_Q9KHE4 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=Q9KHE4_ANASP Length = 390 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 16/242 (6%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 N LY G + K + + + LV A R R V DL+Q G +GL A E++D Sbjct: 144 NRLYQ--GRVAKRKMIRSNLRLVVSIAKRYLNR---GVPFLDLIQEGAMGLNRATEKFDP 198 Query: 62 LQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ + +P + ++ +A +L+Q+ RN +E Sbjct: 199 DKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEA 258 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSN 177 E+AE L I + + L Q S + E + + +D +P ++ ++ Sbjct: 259 EMAEALEISVP--QLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENM 316 Query: 178 LRQRVMEAI-ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 +RQ + E + + L REK V++L Y E L+E+G + + RV Q+ S+A+++L Sbjct: 317 MRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKL 376 Query: 233 RT 234 R Sbjct: 377 RR 378 >UniRef50_B2J5S6 RNA polymerase sigma factor n=13 Tax=Cyanobacteria RepID=B2J5S6_NOSP7 Length = 378 Score = 267 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 16/242 (6%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 + LY G + K + + + LV A R R V DL+Q G +GL A E++D Sbjct: 132 SRLYQ--GRVAKRKMIRSNLRLVVSIAKRYLNR---GVPFLDLIQEGAMGLNRATEKFDP 186 Query: 62 LQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ + +P + ++ +A +L+Q+L RN TE Sbjct: 187 DKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEG 246 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSN 177 E+AE L I + + L Q S + E + + +D +P ++ ++ Sbjct: 247 EMAEALDISVQ--QLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENM 304 Query: 178 LRQRVMEAI-ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 +RQ + E + + L REK V++L Y E L+E+G + + RV Q+ S+A+++L Sbjct: 305 MRQEIWEVLGDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKL 364 Query: 233 RT 234 R Sbjct: 365 RR 366 >UniRef50_B1WQH6 RNA polymerase sigma factor n=5 Tax=Chroococcales RepID=B1WQH6_CYAA5 Length = 297 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 10/240 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+G + + Q + LV A + + + L DL+Q G +GL+ VE++D +G Sbjct: 56 AKGQRARDKMIQANLRLVVSIAKKYLN---SGLSLLDLIQEGSLGLIRGVEKFDPSRGYK 112 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR + + + +P + N + ++I +L +LGR T+ E+AE Sbjct: 113 FSTYAYWWIRQGITRAIAEQSRTIRLPIHINENLNKYRKSIRELTLKLGRKPTQQEIAEN 172 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + I + R + ++ S + +E+ + + D +P + ++ Sbjct: 173 MDISVDKLRFLQQAAFKTKSRSLNIVIDENHTELGQLLPDEDSVSPSDFVKQQEKISQIN 232 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +E L R+K V+ L + ++L+ K IG + R Q++S+A++ LR + K+ Sbjct: 233 RMLENLSPRQKEVIILRFGLRDGKQLSYKAIGEQCGISHERARQIYSRALRILRKQSSKI 292 >UniRef50_A0LLA1 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLA1_SYNFM Length = 433 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 109/232 (46%), Gaps = 12/232 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 K + + + LV A R + R + DDL+Q G +GLL AV R+D +G F+T Sbjct: 195 DSAKQEMVKANLRLVLSIAKRYRGR---GMSFDDLIQEGNLGLLKAVGRFDHTKGNRFST 251 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA +R +++ + + +P + +L +ELGR + E+AER + Sbjct: 252 YATWWVRQSIIRGIYDKTRTIRLPVHFIELKNLFFKVFYELLKELGREPSPQEIAERAKL 311 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + + +L T +Q S + E + +D + +P+++ D L + + Sbjct: 312 PLDKVQMVL--TLAAQPISLETPIGEDEQRLGDFIEDERAASPMEECSDRELAEITRSLL 369 Query: 187 ETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 +L RE+ +L L + + L++IG +V + R+ Q+ +A+++LR Sbjct: 370 SSLQPREEKILRLRFGIDGQPAETLEKIGKTFKVSKERIRQIEKKALRKLRN 421 >UniRef50_B3R1P5 RNA polymerase sigma factor n=78 Tax=Betaproteobacteria RepID=B3R1P5_CUPTR Length = 395 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 108/246 (43%), Gaps = 15/246 (6%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 ++L + + +R + LV A R V L DL++ G +GL++A+E++D Sbjct: 145 STLAKDGDFAARQVMIERNLRLVVSIAKGYLNR---GVPLLDLIEEGNLGLMHAIEKFDP 201 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQ--ELGRNAT 116 +G F+TYA IR ++ + ++ +P V R +V +A LE+ GR+A+ Sbjct: 202 SRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKGGTDGRDAS 261 Query: 117 ETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH-GDSIELVTDDHQRENPLQQLLD 175 ++A LG + + +L N S D + G S+ D P Q++ Sbjct: 262 LEDIAHLLGKTPDEVQDVL--ALNEHTTSLDTPFDLDPGSSLLDFLSDEHNAAPDQEVAH 319 Query: 176 SNLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKR 231 L + + L E+ + V+ + E L+E+ + + RV Q+ +A+ + Sbjct: 320 RELEGLMKLWLARLSEKHRYVVERRFGLNHIEPATLEELAEEMGLTRERVRQIQQEALVK 379 Query: 232 LRTKLG 237 L+ Sbjct: 380 LKRHFA 385 >UniRef50_B2IZW2 RNA polymerase sigma factor n=14 Tax=Cyanobacteria RepID=B2IZW2_NOSP7 Length = 332 Score = 265 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 12/240 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + Q + LV A + Q +++ DL+Q G +GL VE++D +G Sbjct: 92 HQGQKAKQKMIQANLRLVVSIAKKYQRH---NLDFLDLIQEGSLGLERGVEKFDPTKGYK 148 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TY IR A+ + + +P + ++ + +L Q+LGR T ++AE Sbjct: 149 FSTYGYWWIRQAITRAIAEQGRTIRLPIHITEKLNKIKRIQRELTQKLGRTPTAVDIAEE 208 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L +D R LL ++ + ++ + +D +P L+Q + Sbjct: 209 LSLDPKQIRDYLLLARQPVSLELRVGSDKDIE-LQDMLED-NGLSPELYADHKFLQQNIQ 266 Query: 184 EAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + L +++ +LT + EL+L EIG + + RV Q+ QA+ LR K+ Sbjct: 267 NLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLRRHKDKI 326 >UniRef50_C1SHQ6 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHQ6_9BACT Length = 322 Score = 265 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 109/244 (44%), Gaps = 10/244 (4%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 ++ K ++ + + LV A + R + L DL++ G IGLL AVE++D Sbjct: 72 LSQGIEKGCNDSKETMIKCNLRLVVSIAKKYINR---GMNLVDLVEEGNIGLLKAVEKFD 128 Query: 61 ALQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 +G F+TYA IR A+ + +P + N +V + +L+Q+LGR T Sbjct: 129 YTKGFKFSTYATWWIRQAIERAIINQCRMVRIPVHMSENISKVMKTQNELQQKLGREPTI 188 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSN 177 E++ + ++ +++ +E E + DD + +P ++ +++ Sbjct: 189 HELSTACKMPLSTLKKVFDAIKQDTSLDMPVGGDESSTLHEFIADDEKYLDPYLKIENTS 248 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++ + + + L + EK ++ Y + L+ IG L + RV Q+ + + ++R Sbjct: 249 KKEIIFKWLTFLSDNEKTIIIRRYGLTGNDPETLESIGNDLGITRERVRQIEKRVLSKMR 308 Query: 234 TKLG 237 L Sbjct: 309 NLLA 312 >UniRef50_B8KI17 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KI17_9GAMM Length = 367 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 113/245 (46%), Gaps = 13/245 (5%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 L + + + + LV + A R R + L DL++ G +GL+ AVE++D Sbjct: 117 ARLVQKGDEAARKRMIESNLRLVVNIARRYLHR---GMSLLDLIEEGNLGLMRAVEKFDP 173 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR + + ++ +P V ++ +A +L Q+L + T Sbjct: 174 ERGFRFSTYATWWIRQTIERGIMNQARTIRLPIHVVKDLNGCLRAARELTQQLDHDPTTQ 233 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSN 177 E+A R + +++ N ++ S D + D S+ D +P +Q+ D + Sbjct: 234 EIASRTHKTATEVSRLMGL--NERVSSMDAPLGPNSDSSVAETIADEHGCDPSEQIQDDD 291 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + V ++ L E+++ V+ + + L+E+G + + RV Q+ +A+KRLR Sbjct: 292 VHDSVAHWLDELSEKQREVVVRRFGLLGYDSCTLEEVGQEIGLTRERVRQIQVEALKRLR 351 Query: 234 TKLGK 238 L + Sbjct: 352 RILER 356 >UniRef50_B7KCK0 RNA polymerase sigma factor n=2 Tax=Cyanothece RepID=B7KCK0_CYAP7 Length = 295 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 119/240 (49%), Gaps = 11/240 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G + K + Q + LV A R Q R + L DL+Q G +GL+ AVE++D +G Sbjct: 55 EQGQIAKRKMIQANLRLVVSIAKRYQRR---GLSLLDLIQEGSLGLIRAVEKFDPSKGYK 111 Query: 67 FTTYAVQRIRGAMLDELR---SRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA +R A+ L +P + N ++ +++ +L ELGR E EVA+R Sbjct: 112 FSTYAYWWVRQAITRALAEKSRTIRLPIHMTENLNQLKKSVRELTGELGRKPNEQEVAQR 171 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + I + R++ + S + +++ + V D P++ + L ++ Sbjct: 172 MEIPVEKLREIRHAVYRTDAKSLNITLDDNQTELGEVLPDETSL-PIEFVSQWELVTKIN 230 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + +E LP R++ ++TL + + ++ KEIG + R QL ++A++ L+ K +L Sbjct: 231 DLLEDLPPRQREIITLRFGLQTGKRMSYKEIGRQCGISHERARQLLNRAMRTLKQKAFRL 290 >UniRef50_A4FMD9 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=A4FMD9_SACEN Length = 311 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 97/235 (41%), Positives = 153/235 (65%), Gaps = 2/235 (0%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + L Y PLV++ A R+ LP+ VE+ DL+Q+G GL++A+E+++ +G Sbjct: 75 QQRDQELRDRLVLHYAPLVKYVAGRVGTGLPSHVEVSDLIQSGIFGLVDAIEKFEPERGL 134 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA+QRIRGA+LD+LR++DWVPRSVR AR+V +A+ +LE +L R A++ E+AE L Sbjct: 135 KFETYAMQRIRGAILDDLRAQDWVPRSVRSRARDVERALERLEAKLQRTASDAELAEELE 194 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEH--GDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + + R++ + + + D+ S+ D + E+P+ L+D + R+++ Sbjct: 195 LSVDELRELFAQLQMTSVVALDDLIGAGQTTSSLAETLPDDRAEDPVATLVDRDSRRQLA 254 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 EA+E L +R+++V+TLYY E L L EIG VL V ESRV QLH++A+ RLRTKL + Sbjct: 255 EAVERLSDRDRIVVTLYYFENLTLAEIGKVLGVTESRVCQLHTRAVLRLRTKLTE 309 >UniRef50_D1CDN0 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDN0_THET1 Length = 344 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 13/237 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 EG +H L + + LV A R + L DL++ G +GL+ A E++D +G Sbjct: 102 EEGKAARHKLIEHNLRLVVSIARRYVGH---GMPLADLIEEGNLGLMRAAEKFDWRRGFR 158 Query: 67 FTTYAVQRIRGAMLDELR---SRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L +P V ++ + +L ELGR T E+AE Sbjct: 159 FSTYATWWIRQAVTRGLAEGGRTIRLPVHVGEALTKIGRETQRLSLELGREPTNQELAEA 218 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 G+ + + S + E G++ + V +D + NP + L + + Sbjct: 219 TGLSPERIDEYKNASR--LPLSLEAPLGEDGETNLGEVLEDTEAANPEHIADHTMLGEDI 276 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 A+E L ER++ ++ + Y + + L+ G L V R Q+ +A+ RLR Sbjct: 277 KRALERLNERQRAIIIMRYGLYGGQPMTLEAAGRKLGVTRERARQIEQEALNRLRQS 333 >UniRef50_A6CZ07 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ07_9VIBR Length = 296 Score = 265 bits (679), Expect = 9e-70, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 15/248 (6%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + A + + L + LV A R R ++ DL+ G IGL+ AV+++D Sbjct: 45 IARKARAGDTLARQHLINSNLRLVIRTAKRYSNR---GLDFYDLINEGNIGLIQAVDKFD 101 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 G F+TYAV I+ A+ + ++ VP V + RE ++A +L +E T Sbjct: 102 PELGYRFSTYAVWWIQQAIDRAIMNQGRTIRVPVHVTKQIRECSKAAHELRKEGNHEPTS 161 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS---IELVTDDHQRENPLQQLL 174 +E+AER G + ++L + Q S D +E GD ++ + DD E P Q ++ Sbjct: 162 SEIAERTGRAPEEVSKLLKLS--EQSLSLDNGWDEEGDKKDHLQTIDDDDVFELPEQDIV 219 Query: 175 DSNLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIK 230 NL + +++ +++LP++++++L + + L+++G ++ V RV Q+ A++ Sbjct: 220 TQNLNKALIDLVDSLPDKQRVILHHRFGLLDDDPKTLEQVGEIVGVTRERVRQIQKSAME 279 Query: 231 RLRTKLGK 238 LR KL + Sbjct: 280 TLRDKLKR 287 >UniRef50_A9ESS1 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESS1_SORC5 Length = 715 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 96/235 (40%), Gaps = 12/235 (5%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 K+ + + LV A R + L DL+Q G IGL+ AVER+D +G F+TY Sbjct: 483 DAKNRFVKANLRLVVSIARRYNRGR---LPLIDLIQEGNIGLMKAVERFDHSRGYRFSTY 539 Query: 71 AVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A IR A+ L + +P + VA+A + G T E+ + G+ Sbjct: 540 ASWWIRHAISRALADKGRAVRIPVHMLDTYNRVARATQAIIARTGHEPTIEELEKETGVP 599 Query: 128 IADYRQMLLDTNNSQLFSYDEWR-EEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 ++ D FS D +E G + +P L + V + Sbjct: 600 REKLDKV-KDFYAETPFSLDRPVGDEDGRKFIDFLQEENALSPFDHLANRKWSDEVRRLL 658 Query: 187 ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 TL E ++ + +EL LKEIG + R+ QL QA+ ++R ++ Sbjct: 659 TTLTPIESRIIRWRFGLDDEDELTLKEIGDKYNLSRERIRQLQEQALGKIRKQMR 713 >UniRef50_B0RI86 RNA polymerase sigma factor n=2 Tax=Clavibacter michiganensis RepID=B0RI86_CLAMS Length = 347 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 16/237 (6%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G+ K L + LV A R R + DL+Q G +GL+ AVE++D G F Sbjct: 106 DGMRAKQHLVNANLRLVVSIAKRYTGR---GLPFLDLIQEGNMGLVRAVEKFDYQAGFKF 162 Query: 68 TTYAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA I+ ++ + +P + + +L ELGR+ + E+A Sbjct: 163 STYASWWIKQSITRGMADTSRTIRIPVHTVEHINRINAVQRELGDELGRDPSMEEIARES 222 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWR----EEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 + R +L + S + + + +D P+ + + Sbjct: 223 DTPVTKVRYLLDRAQ--EPMSLQVLVGGSGGDGDTEMADLIEDADVTQPIDVVTQQLMAA 280 Query: 181 RVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 V I+ L ER+ V+ + + E +L + L V RV Q+ + + +LR Sbjct: 281 HVTRLIDGLAERDAEVVRMRFGLAGLEPRSLAFVSQQLGVTRERVRQIEKKVLAKLR 337 >UniRef50_B5YKU3 RNA polymerase sigma factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKU3_THEYD Length = 427 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 101/231 (43%), Gaps = 12/231 (5%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 K+ + + + LV A + R + L+DL+Q G IGL+ AVE+++ +G F+TY Sbjct: 188 EAKNKMIESNLKLVVSIAKKYTGR---GLNLEDLIQEGNIGLMKAVEKFEYKKGFKFSTY 244 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 + IR ++ + +P V N ++ + +L Q E++ L I Sbjct: 245 STWWIRQSINRAIAEHSKTIRIPVHVIDNICKINKIYRELYQNSENEPDIEEISLNLNIP 304 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 L + + S D + ++ +D NP ++ L +L+ + + Sbjct: 305 SDKIADFLAISK--EPVSIDMSLRDDDSLLKEFIEDMNSPNPYEEALHDDLKHLIEKVFS 362 Query: 188 TLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 L +REK +L Y + +L E+G V R+ Q+ +A+++L+ Sbjct: 363 LLSKREKEILMRRYGINEEKPKSLDEVGKEFSVSRERIRQIELRAMRKLKR 413 >UniRef50_A4JT57 RNA polymerase sigma factor n=14 Tax=Burkholderia cepacia complex RepID=A4JT57_BURVG Length = 628 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 99/234 (42%), Gaps = 13/234 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + L+ + LV A R R + DL+Q G IGLL A++RYD +G F+T Sbjct: 389 QPARMGLFDANLRLVVSIAKRYPDR---GLPFADLIQEGNIGLLKAIDRYDHRRGFRFST 445 Query: 70 YAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ L VP ++ + + Q G AT E+A ++G Sbjct: 446 YATWWIRQAITHALADLGRTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHELAVQMGE 505 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + R ++ + S D G+ + V D +P + LR + Sbjct: 506 PLDKVRDLMSIVK--EPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRDTIAAM 563 Query: 186 IETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 I LP RE VL L Y E +L++IG L + RV Q+ + A+ RLR Sbjct: 564 IGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRAS 617 >UniRef50_B8I3M5 RNA polymerase sigma factor n=3 Tax=Clostridium RepID=B8I3M5_CLOCE Length = 254 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 90/236 (38%), Positives = 149/236 (63%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 + K L +Y L+++ A RL + ++VE DDL+ G GL++A+E+YD Sbjct: 12 QYIETKDAAAKEKLIIQYAYLIKYVAGRLSIYFGSNVEFDDLVGYGAFGLIDAIEKYDLA 71 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +G F TYA RIRG+++D +R DWVPRS+R+ +E+ + ++E E G AT+ EVAE Sbjct: 72 KGVKFETYASLRIRGSIIDSIRDMDWVPRSLRQKNKELEKVYVEIENEKGHTATDKEVAE 131 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 ++G+ ++D+ ++L D N S + S DE+ E++ + + + + P L + ++Q + Sbjct: 132 KMGLSMSDFYKLLNDVNVSSMMSLDEFMEQNYERGLEIFSESTEDKPEASLEFNEMKQLL 191 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + I+ LPE+EK V+T YY EEL LKEI A++ V ESR+SQLH++A+ R++ KL + Sbjct: 192 ADCIDKLPEKEKAVITFYYFEELTLKEISAIMNVTESRISQLHTKALLRMKGKLFR 247 >UniRef50_C7M2H3 RNA polymerase sigma factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2H3_ACIFD Length = 337 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 11/234 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + Q + LV A R Q + + L DL+Q G +GL++AVE++D +G Sbjct: 94 RQGEEAKRAFIQANLRLVVSIAKRYQ---ASGLPLLDLIQEGNMGLIHAVEKFDWRKGFK 150 Query: 67 FTTYAVQRIRGAMLDELR---SRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + +P + V +A QLE LGR T E+A Sbjct: 151 FSTYATWWIRQAITRGIANTGRTIRLPVHAGDSLSRVQRAQVQLEVRLGRAPTVRELAAE 210 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + + L S + R++ + V +D Q P + L V Sbjct: 211 VDLPYDKLVEALRFRAEPVSLS-EPLRDDGDAELGDVVEDSQSATPFDVAAEHLLPSEVS 269 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + L RE+ +L L Y E L+E+G + R+ Q+ ++A+ +LR Sbjct: 270 RLLAPLDGREREILRLRYGLDRGEPRTLEEVGEYFHLTRERIRQIEARAMSKLR 323 >UniRef50_A0LC35 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LC35_MAGSM Length = 260 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 101/231 (43%), Positives = 152/231 (65%), Gaps = 3/231 (1%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 + + +Y PLVR+ A R+ ++LP SV+LDDL Q G +GL++AV ++D +G F TYA Sbjct: 25 SREEIILKYAPLVRYVAGRISMKLPQSVDLDDLYQVGVMGLIDAVSKFDPDRGIKFQTYA 84 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 RIRGA+LDELR+ DWVPR +R+NA ++ +A QLE + GR A + EVAE LGI + +Y Sbjct: 85 EFRIRGAILDELRAIDWVPRQLRQNASQMQEAYNQLEAKFGRPAEDVEVAEHLGISLNEY 144 Query: 132 RQMLLDTNNSQLFSYDEWREEHGDSIELVTD---DHQRENPLQQLLDSNLRQRVMEAIET 188 + + + S+++ R + D V + D ++P++ + LR + +AIET Sbjct: 145 HEQIDQVRGISIVSFEDIRPNNDDEEWDVLEVLADPSVQDPVEAIGLMELRHAMADAIET 204 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 LPE+E+LV+TLYY EEL + EIG VL + ESR+SQLHS+A R+R ++ + Sbjct: 205 LPEKERLVVTLYYFEELTMSEIGEVLGLTESRISQLHSKAALRMRARIKRF 255 >UniRef50_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L491_THERP Length = 334 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 13/237 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G + L + + LV A R + + + L DL+Q G IGL+ AVERYD G Sbjct: 94 RKGQEAREKLIRHNLRLVVSIAKRYRS---SELPLIDLIQEGNIGLMTAVERYDPELGYR 150 Query: 67 FTTYAVQRIRGAMLDE---LRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L VP + ++ +A Q+EQ+ GR AT E+AE Sbjct: 151 FSTYATFWIRQAIGRAVANLSRTIRVPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAEL 210 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRV 182 LGID+A Q T + S D+ E G+ SI + D + ++ +++ L + +R+++ Sbjct: 211 LGIDVARIEQA--RTQIPRTSSLDKPIGEDGESSIGDLLPDPRSDDVVEEALTNAIREQI 268 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 ++E L ERE+ VL + + + L EI L++ RV Q+ +A+++LR Sbjct: 269 RRSLEQLTERERTVLVMRFGLDGEQPRTLAEIADALKISRERVRQVEKEALQKLRNS 325 >UniRef50_Q2JRK5 RNA polymerase sigma factor n=3 Tax=Cyanobacteria RepID=Q2JRK5_SYNJA Length = 361 Score = 262 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 13/235 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G + L + LV A + R V DL+Q G +GL+ A E+++A +G Sbjct: 119 RQGEQAQRKLINANLRLVVSVAKKYLNR---GVPFLDLIQEGNMGLIRATEKFNAERGFR 175 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR + + ++ +P + R + + +L + GR TE E+AE Sbjct: 176 FSTYAHWWIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEA 235 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 LGI + R + S D + G+S + + D ++E P +++L +LRQ V Sbjct: 236 LGIKVKKLRMIQQAAA--LPLSLDVPVGQEGESRLGDLLPDERQEQPFEEILVQSLRQDV 293 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 A++ L E+ VL L Y + L+E+G + R+ Q+ A+++LR Sbjct: 294 RSAMQALKPIERQVLELRYGLDGQRARTLREVGDHFNLTRERIRQIERDALRKLR 348 >UniRef50_P17211 RNA polymerase sigma factor whiG n=26 Tax=Bacteria RepID=RPSW_STRCO Length = 280 Score = 262 bits (671), Expect = 7e-69, Method: Composition-based stats. Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 5/240 (2%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 S T + L Y PLV++ A R+ V LP +VE D + +G GL++A+E++D Sbjct: 37 SYKTTGDERLREQLILHYSPLVKYVAGRVSVGLPPNVEQADFVSSGVFGLIDAIEKFDVD 96 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 + F TYA+ RIRGAM+DELR+ DW+PRSVR+ AR V +A LE L R +E+EVA Sbjct: 97 REIKFETYAITRIRGAMIDELRALDWIPRSVRQKARNVERAYATLEARLRRTPSESEVAV 156 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-----SIELVTDDHQRENPLQQLLDSN 177 +GI + D + + + + + +E G+ S+ +D +NP++ D Sbjct: 157 EMGIAVEDLHAVFSQLSLANVVALEELLHAGGEGGGRLSLMDTLEDTAADNPVEVAEDRE 216 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LR+ + AI TLPEREK V+TLYY E L L EIG VL V ESRVSQ+H++++ +LR KL Sbjct: 217 LRRLLARAINTLPEREKTVVTLYYYEGLTLAEIGNVLGVTESRVSQIHTKSVLQLRAKLA 276 >UniRef50_A1S281 RNA polymerase sigma factor n=7 Tax=Bacteria RepID=A1S281_SHEAM Length = 969 Score = 262 bits (671), Expect = 7e-69, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 18/234 (7%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + + + LV A + R +EL DL+Q G IGL+ AVE++D +G Sbjct: 727 QRDISAARDEMITFNLRLVLSVANKYLGR---GLELADLVQEGNIGLMKAVEKFDHRKGF 783 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR A+ + + +P V + ++ A L + GR +E++ Sbjct: 784 KFSTYATWWIRQAITRAIADQARIIRIPVHVNESLNKLISASKVLTHKFGRGPKISELSL 843 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 L + + + D + D +P ++++D + + Sbjct: 844 ILSMPETKVENLKQILVMEPVAEADHNTNGY--------VDWAAMSPEEEIIDDDRDTNI 895 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 + ++ L ++EK VL L + EL L+E+G +V R+ Q+ ++++K+L Sbjct: 896 KDLLKGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRERIRQIEAKSLKKL 949 >UniRef50_C7QA49 RNA polymerase sigma factor n=7 Tax=Actinobacteria (class) RepID=C7QA49_CATAD Length = 411 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 139/237 (58%), Gaps = 5/237 (2%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + + L Y PLV++ A R++V LP +++ D + +G GL++A+ER++ + Sbjct: 172 RTGDLGLRERLILHYSPLVKYVAGRVRVGLPGALDSADFVSSGIFGLIDAIERFEPHRHV 231 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA+ RIRGA++DELR+ DW+PRS+R+ ARE+ QA +LEQE GR +E+E+A LG Sbjct: 232 KFETYAIARIRGAIIDELRALDWIPRSLRQKAREIEQASVRLEQEFGRTPSESEIARELG 291 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWR-----EEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 I + + RQ+ + + + DE + +D +P+ R Sbjct: 292 IGLGELRQIFSKLSLVNVAALDELLALPTQSGDRIPLMETLEDGDAPDPVALFEVQETRA 351 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + A+ +LPER+K V+TLYY E + L +IG VL V ESRV Q+H++A+ LR KL Sbjct: 352 LLARAVNSLPERDKTVVTLYYFEGMTLAQIGEVLGVSESRVCQIHTKAVLTLRGKLS 408 >UniRef50_D1V958 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Frankia sp. EuI1c RepID=D1V958_9ACTO Length = 393 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 9/235 (3%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 AE + L + ++PLV + A R + R LDDL+Q IGL+ +V+R+D +G Sbjct: 163 AERAAIRDQLVRMHLPLVEYLARRFRNR---GEPLDDLVQVATIGLIKSVDRFDPERGVE 219 Query: 67 FTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA I G + R + W VPR ++ + +A +L Q+LGR+ T E+A Sbjct: 220 FSTYATPTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQKLGRSPTVAEIAAH 279 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L + + + L N S D +S + + + L R+ + Sbjct: 280 LEMTEEEVLEGLESANAYSAVSLDAPDSGDDESPAVADTLGVQ---DESLEGVEYRESLK 336 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +E LP REK +L L + + +I L + + VS+L ++ + +LR L + Sbjct: 337 PLLEKLPPREKRILLLRFFGNMTQSQIAIELGISQMHVSRLLARTLAQLRRGLLE 391 >UniRef50_Q8S9C9 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa RepID=Q8S9C9_CYAPA Length = 431 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 11/236 (4%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + + L + + V A + + + + DL+Q G IGL+ AVE++D G FT Sbjct: 184 GTLARDRLVRANLRWVVAVAKKYHKQRGT-MSMQDLIQEGNIGLIRAVEKFDPRMGYRFT 242 Query: 69 TYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + +P + +A L + LGR TE E+AE +G Sbjct: 243 TYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVG 302 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTD--DHQRENPLQQLLDSNLRQRVM 183 +D + R+ + S D E + + D + E P + +R+ V Sbjct: 303 LDPSRMRKFVESAAAVATVSLDVPINESDNQSATIGDFIRSENEGPADRAERELMRESVA 362 Query: 184 EAIET-LPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + L ERE +VL + + E L ++G L V RV Q+ +A+++LR Sbjct: 363 RTLAKALSEREYMVLRMRFGLDDGEPKTLNQVGETLGVTRERVRQIEMKALRKLRR 418 >UniRef50_A8ZNW0 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNW0_ACAM1 Length = 299 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 11/235 (4%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 G KH + + LV A + Q R ++L DL+Q G +GL AVE++D +G Sbjct: 56 QKRGKRAKHRMICGNLRLVVTIAKKYQKR---GMDLIDLIQEGSLGLERAVEKFDPAKGY 112 Query: 66 AFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F+TYA IR ++ + + +P + + + +L Q LGR T E+ Sbjct: 113 RFSTYAYWWIRQSITRAIAMQSHTIRIPVHMTEKLNRIKRVRRELSQTLGRTPTHQEMVA 172 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQR 181 LGI + ++ L S S + + + + + +D Q +P + + LR Sbjct: 173 ELGITLEQLQKTLQAAQISNPESLNIRVGKDQEMELGDLLEDLQMPSPNEVVEQDFLRNA 232 Query: 182 VMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 + A+ L + E+ VL L Y E +L + + + V +L A +L Sbjct: 233 LWSALAQLNDNERTVLILRYGLEDGRERSLYRVSQQMGISREWVRKLEQTAKSKL 287 >UniRef50_B8LLW6 Putative uncharacterized protein n=2 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 13/234 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + + LV A Q R + L DL+QAG +GL+ + E++D +G F+ Sbjct: 351 GRDSFDKIINCNLRLVISVAKNYQNR---GLSLQDLIQAGSMGLMRSAEKFDYSRGFKFS 407 Query: 69 TYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR ++ L +P + + + A L QE R+ T+ EVAE G Sbjct: 408 TYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAG 467 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEH-GDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 I + R + + S D + + + D E+ + ++ + Sbjct: 468 ISMTRLRHVTRCSR--VPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDR 525 Query: 185 AIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++TL REK V+ L Y + +L E+G + RV Q+ +A+++LR Sbjct: 526 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQ 579 >UniRef50_Q2SRY7 RNA polymerase sigma factor n=5 Tax=Mollicutes RepID=Q2SRY7_MYCCT Length = 505 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 108/286 (37%), Gaps = 69/286 (24%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ L + + LV A + R ++ DL++ G IGL+ AV++++ +G F+TYA Sbjct: 208 RNKLIESNLKLVISVARKHLNR---GLDFADLIEEGNIGLMKAVDKFEYEKGFKFSTYAT 264 Query: 73 QRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG--ID 127 I A+ + + +P + ++A+ QL QELGR E+A R+G I Sbjct: 265 WWISQAITRAIADQARTIRIPVHMVETINKLARVERQLTQELGREPNAEEIANRVGEGIT 324 Query: 128 IADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 ++ + + S ++ + D+ +D +P + L++ + + Sbjct: 325 SDKVIEIKKLS--IEPVSLEKPFGDEDDTHFGDFVEDKDMVSPSEYTEKEILKEVMDKVF 382 Query: 187 ETLPEREKLVL---------TLY------------------------------------- 200 E +P RE+ V+ L Sbjct: 383 EDMPPREEKVIRMRYGIVPTRLRTLLRLAQECNDTNAKELKQAIEELDIHLDTPIEKVRK 442 Query: 201 ------------YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 Y L+E+G L V R+ Q+ ++ I++L+ Sbjct: 443 FNNEIINNNLAKYDSARTLEEVGKELNVTRERIRQIEAKTIRKLKQ 488 >UniRef50_B9M4Z2 RNA polymerase sigma factor n=12 Tax=Desulfuromonadales RepID=B9M4Z2_GEOSF Length = 358 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 13/245 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + + + + + + LV A R R + DL++ G +GL+ AVER+ Sbjct: 106 LAARIDRGDKAARDKMIESNLRLVVKIAKRYINR---GLPFLDLIEEGNMGLIKAVERFK 162 Query: 61 ALQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 + F+TYA IR ++ L +P V + ++ + +L Q++ R + Sbjct: 163 LSKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINKMLRITRELLQKINREPSI 222 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDS 176 EVA + ++ A R++++ + +S + E+ D + +D +P + L D Sbjct: 223 KEVATAMEVNSAYIRRLMVLLK--KTYSIERPMGENNDYFLIDTIEDTSTVSPAELLEDV 280 Query: 177 NLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 N + V + +TL + EK +LTL + + L IG V R+ Q+ ++++++L Sbjct: 281 NRYEMVSKWFDTLSDNEKKILTLRFGLDDKDPQTLDTIGRSFGVTRERIRQIEAKSLEKL 340 Query: 233 RTKLG 237 R + Sbjct: 341 RKIME 345 >UniRef50_B9ZQZ1 RNA polymerase sigma factor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQZ1_9GAMM Length = 359 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 11/243 (4%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 L + + + + LV A R R + L DL++ G +GL++AVE++D Sbjct: 108 ARLARDGDESGRRRMIECNLRLVVKIARRYLNR---GLPLLDLIEEGNLGLMHAVEKFDP 164 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR + L ++ +P V + R A+ L QELGR+ TE Sbjct: 165 ERGFRFSTYATWWIRQTIERALMNQGRTIRIPVHVSKELRMHARIARNLTQELGRDPTEE 224 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNL 178 E+A+RLG +AD +++ + S + S+ + D + P L D ++ Sbjct: 225 ELAQRLGKPVADIQKLRAMSEPSTSMDLP-PGPDGERSLTDILADVNAQEPSSLLEDQDI 283 Query: 179 RQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + V E + L +++ VL + E L+++GA + V RV Q+ A+KRLR Sbjct: 284 QHLVDEWLGELDYKQREVLVRRFGLHGFERSTLEQVGAEIGVTRERVRQIQMDALKRLRR 343 Query: 235 KLG 237 L Sbjct: 344 LLE 346 >UniRef50_A8L2N7 RNA polymerase, sigma 28 subunit, FliA/WhiG family n=95 Tax=Actinomycetales RepID=A8L2N7_FRASN Length = 376 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 9/229 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L + ++PLV + A R + R LDDL+Q IGL+ +V+R+D +G F+TYA Sbjct: 152 RDQLVRMHLPLVEYLARRFRNR---GEPLDDLVQVATIGLIKSVDRFDPERGVEFSTYAT 208 Query: 73 QRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I G + R + W VPR ++ + +A +L Q LGR+ T +E+A L + Sbjct: 209 PTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQSLGRSPTVSEIARHLEMSEE 268 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + + L N S D ++ + + + L R+ + +E L Sbjct: 269 EVLEGLESANAYSAVSLDAPDSGDDEAPAVADTLGVQ---DESLEGVEYRESLKPLLEKL 325 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 P REK +L L + + +I L + + VS+L ++ + +LR L + Sbjct: 326 PPREKRILLLRFFGNMTQSQIANELGISQMHVSRLLARTLAQLRRGLLE 374 >UniRef50_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q116K5_TRIEI Length = 496 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 15/234 (6%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K+ + + LV A R Q R ++ DL+Q G IGLL A E++D +G Sbjct: 256 EQGRRAKNQMVTANLRLVTSVAKRYQNR---GLDFQDLIQEGVIGLLRATEKFDHTKGYK 312 Query: 67 FTTYAVQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNA-TETEVAE 122 F+TY + IR A+ + + P + ++ + + Q+ E + T EVA Sbjct: 313 FSTYGIWWIRQAITRAICDYSRIVRLPVYLYETISQIKKIVKQISIE--CSPLTAEEVAT 370 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 R+ + + ++ + S D + + I E P + + ++ L++ V Sbjct: 371 RMEMTTEKLQFIIECAQ--ETLSLDYPINKGENIIYKEMIKFNGETPTKYVFENCLQEDV 428 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 ++TL ERE+ VL + + +E LKEIG + R+ Q+ ++A+++L Sbjct: 429 ESVLKTLTERERNVLQMRFGLDDGQEKTLKEIGDTFNLTRERIRQIEAKALRKL 482 >UniRef50_Q1LEA3 RNA polymerase sigma factor n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEA3_RALME Length = 617 Score = 259 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 13/229 (5%) Query: 14 HSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQ 73 + + + LV A + R + L DL+Q G +GL+ AV+R+D +G F+TYA Sbjct: 380 DEMIRSNLRLVVSNAKKYLHR---GMPLLDLIQEGNLGLMRAVDRFDYRRGYKFSTYATW 436 Query: 74 RIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 IR + + + +P + +V +A +L E G +A RL + + Sbjct: 437 WIRQGITRAIADKGPTIRIPIHLVEVVGKVNRASRELFHETGEAPAPEALAARLSLSVKK 496 Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIE-LVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + +L + S + E GD++ D +P + + +LR+ + EA+ TL Sbjct: 497 VKAILDLVK--EPLSLEMSVGESGDALLWDTLTDECSASPDESAMRVSLRKDLDEALATL 554 Query: 190 PEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 RE ++ + Y + L+EIG + RV QL QA+++LR Sbjct: 555 KPREAKIVKMRYGVDAGTDYTLEEIGQQYGLSRERVRQLERQALRKLRN 603 >UniRef50_D1J322 Whole genome shotgun sequence of line PN40024, scaffold_24.assembly12x (Fragment) n=3 Tax=Magnoliophyta RepID=D1J322_VITVI Length = 575 Score = 259 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 11/234 (4%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G+ K + + + LV A Q A + + DL+Q G GL+ E++DA +G F+ Sbjct: 334 GIRCKDKMIKSNIRLVISIAKNYQG---AGMNIQDLVQEGCRGLVRGAEKFDASKGFKFS 390 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA I+ A+ L + +P + V +A QL E GR+ EVAE G Sbjct: 391 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATG 450 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + + +LL + ++ E V D E + L+ +R+ + + Sbjct: 451 LSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSE-VIADPDAETAEELLIKQFMREDLEKV 509 Query: 186 IETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + +L REK V+ Y E L+EIG ++ V R+ Q+ S A ++L+ K Sbjct: 510 LNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNK 563 >UniRef50_C7R3C2 RNA polymerase sigma factor n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3C2_JONDD Length = 283 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 128/228 (56%), Gaps = 4/228 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y PLV A R+ ++LP +VE DL+ G GL++A++++D + F TYA Sbjct: 49 REELILHYAPLVTMIAGRVGMKLPNTVEAADLVSYGMFGLIDAIDKFDPSRDIKFETYAS 108 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 R+RGA++DELR+ DW+PRSVR ARE +A LE L R T E+A+ LG+ D Sbjct: 109 TRVRGAIIDELRALDWIPRSVRSRAREYDRACEHLENTLHREPTSGEIAQHLGVPEKDVW 168 Query: 133 QMLLDTNNSQLFSYDEWREEHGD----SIELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 Q+ ++ + + DE S + +P Q +R+ + +A++ Sbjct: 169 QLQWQVSSGHVIALDEVVSTGDRVDQISAMDSVQETLAVDPAQSFAQGEMREILAQAVDH 228 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 L ERE+ V+TLYY + L EIG +L V ESRVSQ+HS I +LR +L Sbjct: 229 LNERERAVVTLYYFRSMTLSEIGKLLGVTESRVSQMHSAIIVKLRKQL 276 >UniRef50_Q1ASS7 RNA polymerase sigma factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASS7_RUBXD Length = 282 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 10/241 (4%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 ++ A + L + + LV A R + R V +DL+Q G GL+ AVE++D Sbjct: 30 LSRRARAGDGAARRRLIESNLRLVVAIAKRYRGR---GVPFEDLIQEGNAGLIRAVEKFD 86 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATE 117 G F+TYA IR A+ + + +P V + + +A L ELGR T+ Sbjct: 87 PEMGNRFSTYATWWIRQAVTRAVADQGRAVRLPAHVVDSVYRLRRAESALSVELGREPTD 146 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSN 177 EVA RLG + R++ + S EE G + + D ++ Sbjct: 147 EEVAGRLGTSPEEARRLREVSQPISSISARLGDEEDGAELGDLLPDEAASEEYARVEAGP 206 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 R + EA+ +LPERE VL L + + L+E+ +L + + R Q+ +A++ LR Sbjct: 207 WRGVLREAVGSLPEREARVLRLRHGLDGERARTLREVSEILGISQERARQVELKALRTLR 266 Query: 234 T 234 + Sbjct: 267 S 267 >UniRef50_P18184 RNA polymerase principal sigma factor hrdC n=5 Tax=Actinomycetales RepID=HRDC_STRCO Length = 339 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 104/236 (44%), Gaps = 13/236 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G K + + + LV A R R + L D++Q G +GL+ AVE++D +G Sbjct: 97 HDGQEAKDHMVRANLRLVVSMAKRHAHR---GLPLLDVIQEGNLGLIRAVEKFDHTKGFK 153 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L +P V +++A+ +L L R T EVA Sbjct: 154 FSTYATWWIRQAIERGLATHARTVRLPVHVVEQLQKLAKVERKLRAGLDREPTTEEVAAE 213 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 GID+ + L S D +E GD+ + + D + + L + Sbjct: 214 SGIDVDKV--VWLRRVGRDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAEL 271 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 EA+ TL RE L+L+L Y L+++ + + RV QL +++ LR Sbjct: 272 REAVGTLAPRESLILSLRYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLRA 327 >UniRef50_Q47I32 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47I32_DECAR Length = 248 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 111/233 (47%), Positives = 152/233 (65%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 +YTA G D+ L QR+VPLV+ A L RLP SV+ DDL+Q G IGLL+A++R+ Sbjct: 1 MYTAAGQPDREQLVQRFVPLVKRIAYHLMARLPPSVQFDDLVQNGMIGLLDAIDRFQEGF 60 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F TYA QRIRGAMLD LR DW+PR++RR R + AI QLE E GR +E E+AE Sbjct: 61 GAQFETYATQRIRGAMLDGLRENDWLPRNLRRELRRIETAINQLEHEHGRVPSEKELAEA 120 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 LG+ +ADY++ L D QL +D+ E + +P L D +++ ++ Sbjct: 121 LGMSLADYQKTLQDARGHQLVYFDDLAGEGDEGFLERHFTDNAADPAAILEDKSVKATLI 180 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 AI LPEREK+++ LYY+++LNL+EIG V+ V ESRV QLH+QAI RLR+++ Sbjct: 181 TAIGELPEREKMMMALYYEQDLNLREIGEVMGVTESRVCQLHTQAIARLRSQI 233 >UniRef50_D1J802 RNA polymerase sigma factor n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J802_MYCHP Length = 538 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 29/260 (11%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 N+ Y + L +R + LV + A R + R + DL+ G G++ AV +YD Sbjct: 277 NNYYKY--KKARDMLVKRNLRLVINNAKRYKNR---GLNFIDLISEGNAGIMKAVSKYDY 331 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ + + VP + ++ + +L+QE G T+ Sbjct: 332 TKGFKFSTYATWWIRQAITRAVADQARTVRVPVHMVETINKILKIERELQQENGYPPTDE 391 Query: 119 EVAERLG--IDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLD 175 E+A++ G R + N S D+ E S D +P Sbjct: 392 EIAKKYGGDFTAEKVRYIRKI--NIDPISLDKNIGKEENSSFSDFVKDESVISPTSYASH 449 Query: 176 SNLRQRVMEAIET-LPER-EKLVLTLYYQ---------EELNLKEIGAVLEVGESRVSQL 224 L + E IE L ++ ++ ++ + + L E+ L + + +V QL Sbjct: 450 EELSVIINEMIEEGLSDQADRDLIRKRFGINDLKGNKYKPHTLDELSKELGISKEKVRQL 509 Query: 225 HSQAIKRL-----RTKLGKL 239 ++ +++L R KL + Sbjct: 510 ETKVLRKLKHPQKRRKLKEF 529 >UniRef50_Q6MI54 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI54_BDEBA Length = 261 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 105/228 (46%), Positives = 152/228 (66%), Gaps = 3/228 (1%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K L + Y PL++ A ++ VRLP+++ELDDL+ AG IGL++A+E+YD+ + F TYA Sbjct: 23 KDDLIREYAPLIKFIAQKIAVRLPSNIELDDLISAGVIGLMDAIEKYDSTRDNKFKTYAE 82 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+LDELR++DWVPRS+R A+ + + + QLE +LGR ++ EVA+ L + I ++ Sbjct: 83 FRIRGAILDELRAQDWVPRSIRDKAKLLDKTMVQLEADLGRTPSDEEVAKALNVSIDEFH 142 Query: 133 QMLLDTNNSQLFSYDEWRE---EHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 ++ L D+ SI + + + +P QL N+++ V +AIE L Sbjct: 143 DLVNQVRPVSLLPIDQATSFSNTDKKSIMDILEGSRTNSPFNQLNVKNIKEVVAQAIEEL 202 Query: 190 PEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 PER++LVL+LYY E+LNLKEIG VL V ESRVSQLH+QA+ RLR KL Sbjct: 203 PERQRLVLSLYYYEDLNLKEIGQVLRVTESRVSQLHAQAVARLRAKLA 250 >UniRef50_C6X620 RNA polymerase sigma factor RpoD n=68 Tax=Bacteria RepID=C6X620_FLAB3 Length = 294 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + A + L + + V + + Q + + L DL+ G +GL+ A +RYD Sbjct: 45 LAQKIRAGDRVALEKLIKANLRFVVSVSKQYQNQ---GLSLPDLINEGNLGLMKAAKRYD 101 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPR---SVRRNAREVAQAIGQLEQELGRNATE 117 +G F +YAV IR ++L L + + R + + ++ +A LEQE R + Sbjct: 102 ETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKAYAHLEQENERPPSP 161 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDS 176 E+AE L + D ++ + N+ + S D E DS + V + +P ++L+ Sbjct: 162 EELAEVLDMSEDDIKESMK--NSGRHLSMDAPLVEGEDSNLYDVLRSGESPSPDKELMLE 219 Query: 177 NLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 +L+ + A++TL RE ++ LY+ + L+EIG ++ RV Q+ +AIKRL Sbjct: 220 SLQIEIERALQTLTPREADLVRLYFGLNGKHPMTLEEIGETFDLTRERVRQIKEKAIKRL 279 Query: 233 R 233 + Sbjct: 280 K 280 >UniRef50_P43344 RNA polymerase sigma factor rpoD (Fragment) n=31 Tax=Bacteria RepID=RPOD_SERMA Length = 215 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 100/203 (49%), Gaps = 10/203 (4%) Query: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRR 95 ++ DL+Q G IGL+ AV++++ +G F+TYA IR A+ + + +P + Sbjct: 1 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 60 Query: 96 NAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD 155 ++ + Q+ QE+GR T E+AER+ + R++L + S + + D Sbjct: 61 TINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK--EPISMETPIGDDED 118 Query: 156 S-IELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEEL----NLKEI 210 S + +D E PL +LR + + L RE VL + + ++ L+E+ Sbjct: 119 SHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREXKVLRMRFGIDMNTDHTLEEV 178 Query: 211 GAVLEVGESRVSQLHSQAIKRLR 233 G +V R+ Q+ ++A+++LR Sbjct: 179 GKQFDVTRERIRQIEAKALRKLR 201 >UniRef50_P78022 RNA polymerase sigma factor rpoD n=2 Tax=Mycoplasma RepID=RPOD_MYCPN Length = 499 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 109/250 (43%), Gaps = 20/250 (8%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 +NS + L + LV A + L ++ +DL+Q G +GLL A+ +++ Sbjct: 237 LNSTDEESRKYAINQLVTSNLRLVVSIAKK---HLERGLDFNDLIQEGNLGLLKAISKFN 293 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 G F+TYA I+ A+ + + +P + +A+A L QELGR T Sbjct: 294 WSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERALNQELGREPTA 353 Query: 118 TEVAERL-----GIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQ 171 E+AE++ G + ++ + S D+ +S D + P + Sbjct: 354 EELAEKMGGQAEGFTVKKIAEIKRLSL--DPVSLDKTVGHDEESQFGDFVRDTDAQMPDE 411 Query: 172 QLLDSNLRQRVMEAIET-LPEREKLVLTLY-----YQEELNLKEIGAVLEVGESRVSQLH 225 + +++ E + L E+E+L++ + Y E L E+ +++ ++ Q+ Sbjct: 412 FTESRSNYEKIDELLNNCLSEQEELIVRMRIGMPPYNETKTLDEVSQKIKIPREKIRQIE 471 Query: 226 SQAIKRLRTK 235 ++AI++LR Sbjct: 472 TKAIRKLRQA 481 >UniRef50_Q60012 RNA polymerase principal sigma factor hrdD n=27 Tax=Actinomycetales RepID=HRDD_STRVF Length = 332 Score = 255 bits (654), Expect = 6e-67, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 13/234 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + + LV A R + + L DL+Q G GL+ AVE++D +G F+ Sbjct: 93 GERAKDVFIRSNLRLVVAVARRYPR---SGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFS 149 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + + + + +E GR+ EVA LG Sbjct: 150 TYATWWIRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEVAAELG 209 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVME 184 +L S + ++ G++ + +D +P Q +L + + + Sbjct: 210 STPERVIDVLDWAR--DPVSLNMAVDDAGETQFGDLLEDTSAVSPEQSVLTLLRSEELDD 267 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 I L +R ++ + Y E L E+G + R+ Q+ A+ L+ Sbjct: 268 LIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKK 321 >UniRef50_B0K1Q2 RNA polymerase sigma factor n=11 Tax=Thermoanaerobacterales RepID=B0K1Q2_THEPX Length = 246 Score = 255 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 143/232 (61%), Gaps = 2/232 (0%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + ++ + +Y+PLV+H +L + E +DL+ G IGL++A+E+Y +G Sbjct: 15 NKDPNLRNEIIIKYMPLVKHIVKKLIISDITQSEYEDLINQGVIGLIDAIEKYQPSKGVK 74 Query: 67 FTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 F TYA RIRG ++D LR +DW+PRS+++ R++ + + L+Q+ R T E+ E G+ Sbjct: 75 FETYATLRIRGEIIDYLRKKDWMPRSLKKKYRKIEETVETLQQKYNREPTVEEITEACGL 134 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + D + L N S + S +E E + D + +NP +++L L++++ AI Sbjct: 135 NETDVLKTLSYINVSNINSLEEAIENN--FKLHAISDVELKNPEEEVLYKELKRKLANAI 192 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E LP++E+LV+TLYY E+LN K+I +L + ESR+SQ+H++AIKR+R LG+ Sbjct: 193 ENLPDKERLVITLYYYEDLNYKDISKILNLTESRISQIHTKAIKRIREILGE 244 >UniRef50_Q601Y8 RNA polymerase sigma factor n=8 Tax=Bacteria RepID=Q601Y8_MYCH2 Length = 676 Score = 255 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 22/248 (8%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + +L +R + LV + A R + R + DL+ G +G++ AV +YD +G F+ Sbjct: 428 GKKARDTLIKRNLRLVVNSAKRYKNR---GLGFIDLISEGNLGIIKAVAKYDYTRGFKFS 484 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P + ++ + +L+QE G N T E++ERLG Sbjct: 485 TYATWWIRQAITRAVADQARLIRIPVHMVETINKINKVERELQQEKGLNPTAEEISERLG 544 Query: 126 --IDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 R + N S D+ E S D +P+ + + + Sbjct: 545 GEFSPDKIRYIKKI--NIDPISLDKAIGKEEDSSFSDFIKDENMISPVDYAIREEKAKVL 602 Query: 183 MEAIE-TLPEREKLVLTLYYQ----------EELNLKEIGAVLEVGESRVSQLHSQAIKR 231 +E I+ TL E+ + Y + + +E+ A+ V + RV Q+ ++ +K+ Sbjct: 603 LEMIDSTLDYDERDFIKRRYGVGTNDEGIPYQAHSFEELAAMRRVTKERVRQIEAKILKK 662 Query: 232 LRTKLGKL 239 LRT +L Sbjct: 663 LRTPHRRL 670 >UniRef50_B1K0Z2 RNA polymerase sigma factor n=2 Tax=Burkholderiales RepID=B1K0Z2_BURCC Length = 857 Score = 255 bits (653), Expect = 9e-67, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 16/243 (6%) Query: 1 MNSLYT---AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVE 57 + S Y + + + + LV H A + + + LDDL Q G IGLL AVE Sbjct: 501 LASQYANAMKAYQLARERMAVANLKLVFHLAKKYRY---SGEPLDDLAQEGNIGLLKAVE 557 Query: 58 RYDALQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRN 114 R+D +G F+TYA IR + L + VP V A+ +++ LE E GR Sbjct: 558 RFDWRRGFKFSTYATWWIRQQIGRHLADKCRTVRVPVHVHEKAQRLSRETQALESETGRA 617 Query: 115 ATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLL 174 E+A RL + + ++ ++ +E V D +P+ + Sbjct: 618 PELHEIAARLNMAVQKVAELQRLAPEPLPI-HELPIDE--LIAVEVRSDFVSPDPMDIVS 674 Query: 175 DSNLRQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIK 230 S L + + + + TL +E+ L L + E L L+EIG V RV Q+ A++ Sbjct: 675 KSELLETIDKLLSTLKPKEEQTLRLRFGIGVEEALTLEEIGCQYGVTRERVRQIEVAALR 734 Query: 231 RLR 233 L+ Sbjct: 735 NLK 737 >UniRef50_A8MHG6 RNA polymerase sigma factor n=2 Tax=Alkaliphilus RepID=A8MHG6_ALKOO Length = 245 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 143/234 (61%), Gaps = 4/234 (1%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 + K L + Y+ LV+ A RL + +++E DDL+ G GL++A+E++D Sbjct: 10 NYKNNNDSQAKALLIEEYIRLVKFIAGRLYISYGSNIEYDDLVSYGIFGLIDAIEKFDLN 69 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 + F TYA RIRGA++D LRS DWVPRS+R+ ++++ +A LE +LGR+AT+ EV+E Sbjct: 70 KQVKFETYAQIRIRGAIIDSLRSLDWVPRSIRQKSKKIEEAYSSLENKLGRSATDVEVSE 129 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 L I + + +++LL+T + + S +E E + L+ + + + + + Sbjct: 130 ALDISVKELQEILLNTASFNVISLEEVIFE----VGLIGNTAEEQLTEDLICRRETYNNL 185 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + I LPERE+ V++LYY L KEIG VL++ ESRVSQLHS+AI RL++KL Sbjct: 186 KDTIVQLPERERQVISLYYYNNLTYKEIGKVLDISESRVSQLHSKAISRLKSKL 239 >UniRef50_Q7U3K5 RNA polymerase sigma factor n=21 Tax=Cyanobacteria RepID=Q7U3K5_SYNPX Length = 467 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 14/234 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + Q + LV A + Q R +EL DL+Q G +GL AVE++D +G F+ Sbjct: 224 GRRAKDHMIQANLRLVVAVAKKYQQR---GMELLDLVQEGTLGLERAVEKFDPTRGFRFS 280 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR M + ++ +P V + +A ++ GR A+ ++A L Sbjct: 281 TYAYWWIRQGMTRAIATQSRTIRLPVHVTEKLNRIKRAQQEIATNEGRIASIADLARALK 340 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVME 184 + RQ L + S D D+ + + +D + P Q L L + Sbjct: 341 LSEDTVRQTL--ARVPRSVSLDTRVGRDQDTQLGDLIEDGKA-TPEQTLTHDELHNDLEH 397 Query: 185 AIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 ++ L RE VL + E L +IG L++ RV Q+ ++A+ +LR Sbjct: 398 LLDELTSREAAVLRRRFGLEDDTPQTLAQIGEALKLSRERVRQIETRALLKLRQ 451 >UniRef50_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0N062_9BACT Length = 286 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 12/240 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + L + + V A + Q + + L DL+ G +GL+ A E++D Sbjct: 39 LAQRIKKGDQEALEKLTKANLRFVVSVAKQYQNQ---GLSLPDLINEGNLGLIKAAEKFD 95 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPR---SVRRNAREVAQAIGQLEQELGRNATE 117 +G F +YAV IR ++L L + + R + + ++ +A + EQE R + Sbjct: 96 ETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGSLNKINKAFARFEQEHERTPSP 155 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWR-EEHGDSIELVTDDHQRENPLQQLLDS 176 E+A L + L + S D + +S+ V + N + L++ Sbjct: 156 EELANELELPKEKVTDTLRVAG--RHVSVDAPFADGEDNSLLDVLVNPDSPNADRGLINE 213 Query: 177 NLRQRVMEAIETLPEREKLVLTLYYQE---ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +L V A+ETL ERE+ ++ ++ E+ L+EIG ++ RV Q+ +AI+RLR Sbjct: 214 SLSTEVDRALETLTERERDIIKYFFGIGCSEMTLEEIGEKFDLTRERVRQIKEKAIRRLR 273 >UniRef50_B8HIZ1 RNA polymerase sigma factor n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIZ1_ARTCA Length = 951 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G L + LV A R R ++ DL+Q G GL AV+++D +G F+ Sbjct: 525 GRDAVLKLVSCNLRLVVSIAKRHTGR---GMDFLDLIQEGNAGLYRAVQKFDYTKGFKFS 581 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA IR A+ + + +P V A Q GR+ T E+AE G Sbjct: 582 TYATWWIRQAITRGIADQSRTIRLPVHFHEQVVSVFIAERNFLQSEGRDGTAEEIAEACG 641 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHG-DSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + + + ++ + G + + D + + L+ V Sbjct: 642 KTVDEINAVRRHRTPPASLDWEVPNGKGGVELLGETLYDPDEPTAYDAAVLAQLQSAVHG 701 Query: 185 AIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQA 228 A++ L ERE VL + E+L L +IG + V R+ Q+ ++A Sbjct: 702 ALDRLSEREAGVLAYRFGLATGEQLTLDQIGTIYGVTRERIRQIEAKA 749 >UniRef50_D0L243 RNA polymerase sigma factor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L243_HALNC Length = 343 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 13/242 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 + + + + LV A R R ++L DL++ G IGL+ AVE++D +G Sbjct: 96 AQSGDESARQKMIVCNLRLVIKIARRYMNR---GLDLLDLIEEGNIGLMRAVEKFDPERG 152 Query: 65 TAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYA IR + L ++ +P V + +A ++ Q T ++A Sbjct: 153 FRFSTYATWWIRQTIERGLMNQSRTVRLPVHVVKEVHTFNRAARKIAQNQNAEVTAEQIA 212 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQ 180 + L + + +++ N + S+D + G+ S+ + D + P + L D+ + Sbjct: 213 DHLDRPVNEVLKIM--AFNERQSSFDSPLKGDGEFSLLDLIPDQESNQPDELLQDAGVHG 270 Query: 181 RVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + + I L +++ VL Y E L+E+G L V RV Q+ +A++RL++ Sbjct: 271 FLDQLIAQLESKQREVLVRRYGLRGYETHTLEEVGNHLGVTRERVRQIQLEAVRRLKSLA 330 Query: 237 GK 238 K Sbjct: 331 KK 332 >UniRef50_O22455 Sigma factor 2 n=8 Tax=core eudicotyledons RepID=O22455_ARATH Length = 574 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 13/235 (5%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G + K + + + LV A Q A + L DL+Q G GL+ E++DA +G F+ Sbjct: 331 GTLCKDKMIKSNIRLVISIAKNYQG---AGMNLQDLVQEGCRGLVRGAEKFDATKGFKFS 387 Query: 69 TYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 TYA I+ A+ L + +P + V +A QL E G++ E+AE G Sbjct: 388 TYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATG 447 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVME 184 + + +LL + S D + + V D + L+ +RQ + + Sbjct: 448 LSMKRLMAVLLSPKPPR--SLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDK 505 Query: 185 AIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 +++L REK V+ + E L+EIG ++ V RV Q+ S A ++L+ K Sbjct: 506 VLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNK 560 >UniRef50_A9B1P1 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1P1_HERA2 Length = 303 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 108/237 (45%), Gaps = 13/237 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 L + + LV A R + + DL+Q G IGL+NA+ER+DA +G F+T Sbjct: 72 EPAHEQLVRANLRLVVSIAKRYRG---FGLPFQDLIQEGNIGLMNAIERFDATKGVRFST 128 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ L ++ +P +V + +L Q LGR + E++ LG+ Sbjct: 129 YATWWIRQAITRSLANQGRLIRLPVHRWELLIKVRRIETKLLQALGREPSANEISTALGV 188 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 +L S + E D + D E+ L+ LL S Q Sbjct: 189 PEEKICDLLSIAQ--VPISLATPKNEETDMLLGDSLPDEDWEDELECLLTSIDAQYTRAM 246 Query: 186 IETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + L E+E+ VLTL Y + +L E+GAV+ R+ Q+ + A++ LRT+L + Sbjct: 247 LNQLSEQEQEVLTLRYGLKDGKSRSLSEVGAVVGRTRQRIQQIEAGALQVLRTQLSQ 303 >UniRef50_B7ATU0 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B7ATU0_9BACE Length = 254 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 144/238 (60%), Gaps = 2/238 (0%) Query: 3 SLYTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 S Y+ + L Y LV+ A RL + L SVE DDL G GL++A++++D Sbjct: 11 SEYSRTRSTALRDQLIIEYSQLVKLVAGRLGMYLGYSVEYDDLCGYGIFGLIDAIDKFDC 70 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 + F TYA RIRGA+LD++R DW+PRS+R+ +++ A+ ++E + G AT+ E+A Sbjct: 71 NKNVKFETYASLRIRGAILDQIRKMDWIPRSLRQKQKKIDAAMSKIEAQKGSVATDEELA 130 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHG-DSIELVTDDHQRENPLQQLLDSNLRQ 180 + LGI + ++ T + L S DE+ E G ++ + + + P + L++ Sbjct: 131 QELGITLDEFNDWQGKTKATNLISLDEYTETQGTEAKMDSVTNARFDQPEDVVEKEELKK 190 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++EAI L ++E+ V+TLYY EE+ LKEI VL+V ESRVSQLH++A+ ++++KLG Sbjct: 191 MIVEAISLLTDKERSVVTLYYYEEMTLKEISLVLDVSESRVSQLHTKALLKMKSKLGP 248 >UniRef50_D1A523 RNA polymerase sigma factor n=3 Tax=Actinomycetales RepID=D1A523_THECD Length = 360 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A GV K + + LV A + ++ L DL+Q G +GL+ AVE++D +G Sbjct: 73 AAGVRAKQRFVEANLRLVVSIARKY---PTDALPLIDLIQEGNLGLMRAVEKFDYRRGFK 129 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR ++ L +P V + +A QL +ELGR T E+AE Sbjct: 130 FSTYATWWIRQSIGRGLSHTARTIRLPVHVEEELSRLRRAERQLGRELGREPTREELAEA 189 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRV 182 LG + ++L S D ++ G++ + + +D + +P ++L + + Sbjct: 190 LGAAVDHVDELLRWRR--DPASLDAAVDDAGETPMGDLLEDPEGVSPEAEVLALDDIAGL 247 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 ++ LPERE +L + + L+ +IGA + +RV Q+ ++++RLR + Sbjct: 248 ARLLDRLPERESAILRARFGIEDGQPLSYAQIGARYGLSHNRVRQITDRSLRRLRQLAAE 307 >UniRef50_C0ZF72 RNA polymerase sigma factor n=5 Tax=Bacillales RepID=C0ZF72_BREBN Length = 262 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 144/236 (61%), Gaps = 3/236 (1%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 + L R++PLV A RL + LPA+V+ DDL+ G GLL+A+ ++D +G Sbjct: 21 QEGSREAEVDLITRFLPLVDKVANRLAINLPANVDKDDLISYGRFGLLDALAKFDHTRGL 80 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA+ RIRGAM+D LR DW+PR+VR A+++ +A LEQ++ R T+ EV++ LG Sbjct: 81 QFETYAMWRIRGAMIDGLRENDWIPRTVRDKAKKIEEAYTTLEQQMLRMPTDQEVSDYLG 140 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD---SIELVTDDHQRENPLQQLLDSNLRQRV 182 I + +Q+ L+T+ + + S DE + + + D P S+L++ + Sbjct: 141 ISKKELQQVFLETSLASMVSIDEAVGDEDEQKTARHSYIIDELTPRPDNVAEVSSLKEVL 200 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + I+ LPE+E+LV++L+Y EE+ L EI ++ + SR+SQLHS+A+ RLR+ L + Sbjct: 201 VTVIDKLPEKERLVISLFYFEEMTLSEIAEIMSLSPSRISQLHSKALFRLRSALSR 256 >UniRef50_Q03065 RNA polymerase sigma-B factor n=68 Tax=cellular organisms RepID=RPSB_ANASP Length = 332 Score = 252 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 12/235 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + K + Q + LV A + Q R ++E DL+Q G +GL VE++D G F Sbjct: 93 QGQIAKQKMIQANLRLVVSIAKKYQKR---NLEFLDLIQEGALGLERGVEKFDPTLGYKF 149 Query: 68 TTYAVQRIRGAMLDELR---SRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR + + +P + ++ +L Q+LG A TE+A+ L Sbjct: 150 STYAYWWIRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQAL 209 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 ++ + R+ L E+ +L+ DD +P + L Q + Sbjct: 210 NLEPSQIREYLQLVRQPVSLDMRIGFEQDTQLQDLLKDDG--MSPERYAERELLYQDIHN 267 Query: 185 AIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + L ++K VL L + EL L +I + + RV Q+ QA+ LR Sbjct: 268 LLAKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLRRY 322 >UniRef50_D1BJ83 RNA polymerase sigma factor n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJ83_SANKS Length = 345 Score = 252 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 92/239 (38%), Positives = 137/239 (57%), Gaps = 5/239 (2%) Query: 5 YTA-EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y A + L Y PLV A R+ ++LP++VE DL+ G GL++A+E+++ + Sbjct: 103 YKACADAPTRERLILHYAPLVTSVASRVGMKLPSTVEHADLVSYGMFGLIDAIEKFELDR 162 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F TYA RIRGA+LDELR+ DWVPRSVR AR V +A +LE L R T+ E+AE Sbjct: 163 EIKFETYATSRIRGAILDELRANDWVPRSVRSKARAVDRAHAELEARLHRAPTDPEIAEH 222 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHG--DSIELVTDDHQR--ENPLQQLLDSNLR 179 + I +++ R + + L + DE + + + H +P + + Sbjct: 223 MEIALSELRSIRHLVSTVNLVALDEVFGAGDQVEPVGHLDTGHGARSTDPARTFESKETK 282 Query: 180 QRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + +A++ L EREK++L LYY E + L EIGAVL V ESR+SQ+H+ A+ RLR KL + Sbjct: 283 FLLSQAMDQLGEREKIMLVLYYYEGMTLAEIGAVLGVTESRISQMHTAAMGRLREKLSR 341 >UniRef50_A5IY54 RNA polymerase sigma factor n=2 Tax=Mycoplasma RepID=A5IY54_MYCAP Length = 509 Score = 252 bits (644), Expect = 9e-66, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 107/248 (43%), Gaps = 22/248 (8%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G + L +R + LV + A + + R + DL+ G G++ AV++Y+ +G F Sbjct: 258 KGKRARDKLIKRNLRLVINNAKKYKNR---GLSFIDLISEGNSGIIKAVQKYNVNKGFKF 314 Query: 68 TTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR A+ + + VP + ++ + +L+QE G + T+ E+A+R Sbjct: 315 STYATWWIRQAITRAVADQSRTVRVPVHMVETINKITKIERELQQENGVDPTDEEIAQRY 374 Query: 125 G--IDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 G R + N S D+ E+ S D NP+ L + Sbjct: 375 GNDFTAEKVRHIRKI--NIDPISLDKQIGKENDSSFSDFVKDESVVNPVDYASHEELVET 432 Query: 182 VMEAI-ETLPEREKLVLTLYYQ----------EELNLKEIGAVLEVGESRVSQLHSQAIK 230 + + +TL E ++ Y + +L+E+ V + R+ Q+ ++ ++ Sbjct: 433 LNAILKDTLDADEYELICKRYGVGFDNNGEKYKVFSLEELALERNVSKERIRQIENKILR 492 Query: 231 RLRTKLGK 238 +L++ + Sbjct: 493 KLKSSPER 500 >UniRef50_Q04SE0 RNA polymerase sigma factor n=12 Tax=Bacteria RepID=Q04SE0_LEPBJ Length = 266 Score = 252 bits (644), Expect = 9e-66, Method: Composition-based stats. Identities = 98/236 (41%), Positives = 150/236 (63%), Gaps = 4/236 (1%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + + L ++Y PLV+H A R+ + +P +VE DDL+ G GLL+A+E++D + F Sbjct: 24 KDQDIRSYLVEKYSPLVKHVAGRIAIGMPQNVEFDDLVSYGVFGLLDAIEKFDPDRLIKF 83 Query: 68 TTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 TYA+ RIRG++ DELRS DW+PRS+R+ A+++ Q IG LE + G+ + +A+ LGI Sbjct: 84 KTYAMTRIRGSIFDELRSIDWIPRSIRQKAKQLEQIIGMLENKEGQQVDDDAIAKELGIS 143 Query: 128 IADYRQMLLDTNNSQLFSYDE----WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + +Y +L + + L S ++ E S + NP + ++ ++ Sbjct: 144 MEEYNSLLTKISGTSLVSLNDIWFLGDENDEVSFMETLESPMNMNPDTIIEKEEIKNVIV 203 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 EAI+TLPE+EK V+ LYY E+L LKEIG VLEV ESR+SQLH++A+ RLR+KLGK+ Sbjct: 204 EAIKTLPEKEKKVIVLYYYEDLTLKEIGEVLEVTESRISQLHTRAVSRLRSKLGKV 259 >UniRef50_D0LPW6 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LPW6_HALO1 Length = 465 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 14/242 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 ++ + + LV A R + L DL+Q G +GL+ AVERYD +G Sbjct: 224 HAARNARNEFVKANLRLVVSIARRFNHGR---MSLADLIQEGNLGLIKAVERYDYRRGFR 280 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L + +P + + +A QL LGR T E++E Sbjct: 281 FSTYASWWIRHAIGRALADKGREVRLPVHMLDAHHRLLKAQHQLTNTLGRQPTSEELSEA 340 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWR-EEHGDSIELVTDDHQRE--NPLQQLLDSNLRQ 180 + + +M + Q S D +E G S+ V D E + L L + Sbjct: 341 ANLSVEKIEKMRTHLLD-QALSLDRPMNDEDGRSVAEVLQDPHGEEHSALNVLAQRTMSD 399 Query: 181 RVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 V + ++TL E +L + EEL LK+IG + R+ QL QA+ ++R L Sbjct: 400 EVRKTLQTLRPIEADILRRRFGLDNDEELTLKQIGEQYNLSRERIRQLQEQALTKMRVAL 459 Query: 237 GK 238 + Sbjct: 460 RR 461 >UniRef50_B3PMH4 RNA polymerase sigma-70 factor n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMH4_MYCA5 Length = 513 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 29/260 (11%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 N+ Y + L +R + LV + A R + R + DL+ G G++ AV +YD Sbjct: 252 NNYYRY--KRARDMLVKRNLRLVINNAKRYKNR---GLSFIDLISEGNSGIMKAVSKYDY 306 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR A+ + + VP + ++ + +L+QE G T+ Sbjct: 307 KKGFKFSTYATWWIRQAITRAVADQARTIRVPVHMVETINKILKIERELQQEFGYPPTDE 366 Query: 119 EVAERLG--IDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLD 175 E+A++ G R + N S D+ E S D +P Sbjct: 367 EIAKKFGGDFTAEKVRYIRKI--NIDPISLDKNIGKEENSSFSDFVKDESVISPNDFASQ 424 Query: 176 SNLRQRVMEAI-ETLPEREKLVLTLYYQ----------EELNLKEIGAVLEVGESRVSQL 224 L + E I +L ++ ++ Y L E+ L + + +V +L Sbjct: 425 QELAVILNEMINSSLDPEDQALIRKRYGVGQDPSGVPYRPHTLDELAKELNISKEKVRKL 484 Query: 225 HSQAIKRL-----RTKLGKL 239 ++ +++L R KL + Sbjct: 485 EAKILRKLKHPQKRKKLKEF 504 >UniRef50_Q2RKC7 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKC7_MOOTA Length = 255 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 135/240 (56%), Gaps = 4/240 (1%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 S + + L +Y+PLV++ RL V+ P ++ +DLL G +GLL AV+RYD Sbjct: 10 TSYMAGRDALRRQELVLKYLPLVKYHVNRLAVKPPPHLDQEDLLGYGIVGLLEAVDRYDP 69 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 +G F T+A QRIRGA+LD LR W PRS+ R +Q QLEQE G ++ VA Sbjct: 70 SRGVNFETFASQRIRGAILDALRRAHWAPRSLIEKLRRASQVYRQLEQEQGGEVSDGAVA 129 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWR----EEHGDSIELVTDDHQRENPLQQLLDSN 177 LGI A+ R+++ + + S +++ E G + + D +P+ Sbjct: 130 RALGITEAELRELMERGSQMAILSLEDFLLDQEGEEGTTRGELLADPGSPDPVGIYEQGE 189 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LR+ + A+E L E+++LVLTLYY E L LKEIG VL + ESRV QLH +AI LR +L Sbjct: 190 LRRALAAALENLKEKDRLVLTLYYYEGLTLKEIGKVLGISESRVCQLHGRAILNLRRQLA 249 >UniRef50_D1IHF7 Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) n=2 Tax=rosids RepID=D1IHF7_VITVI Length = 561 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 11/238 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 G + L + +V H A + Q R + L DLLQ G +GL+N+VE++ G Sbjct: 316 HSGNRSRQKLIYANLRMVVHIAKQYQGR---GLNLQDLLQEGSMGLMNSVEKFKPNAGCR 372 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F +YA IR A+ + +P ++ +V +A QE + T+ E+AER Sbjct: 373 FASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAER 432 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 +GI I +++LL T W ++ + + VT D E P + +RQ V Sbjct: 433 VGITIEKLQRLLLHTRMPLSMQQPVWADQD-TTFQEVTADTGIEIPDVSVAKQLMRQHVR 491 Query: 184 EAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + L +E+ ++ L + L EIG V + RV QL +A+ +L+ L Sbjct: 492 NLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLS 549 >UniRef50_Q0F2K4 RNA polymerase sigma factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2K4_9PROT Length = 282 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 112/240 (46%), Gaps = 12/240 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A H + Q + LV + R R V L DL++ G +GL+ AVE++D G Sbjct: 38 AGDKEAHHYMVQANLRLVVKISRRYMNR---GVALADLIEEGNLGLIRAVEKFDVTHGCR 94 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ + ++ VP V + + + +L EL R+ T+ E+AE Sbjct: 95 FSTYATWWIRQAVERAIMNQSRTIRVPVHVGKELYALTKHTNRLRSELERDPTDVEIAEA 154 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 +G+ + ++++ + D ++ ++ VT D E+P Q+ + + Sbjct: 155 MGVSVQRIQELMGAAVRTDSAD-DMLHDDSDFTLYDVTADEAAESPGDQMQTVLRNEILQ 213 Query: 184 EAIETLPEREKLVLTLYY-----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + L ++E+ V+ L Y + L+ IG L V R+ Q+ QA+++LR + + Sbjct: 214 VWMSKLEKKEREVVRLRYGLDDAGDPWTLEMIGEQLGVTRERIRQIQVQALQKLRRIVSQ 273 >UniRef50_B7KLN9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLN9_CYAP7 Length = 308 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 9/235 (3%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 EG K+ L Q + LV + A + R + +DLLQ G IGL+ A E ++ +G Sbjct: 78 EEGQQAKNQLVQGNLRLVINLAKKYLGR---GLSFEDLLQEGNIGLIRAAELFEPSKGYK 134 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR ++ + +P + + + +L +LGR T E+A Sbjct: 135 FSTYAYWWIRQQIIRAINNSARTIRLPVHIIARLNRIKKTQHKLAAQLGRTPTVQEIATS 194 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L + + + + S E+ ++++ + D + L ++++ Sbjct: 195 LQMSAQEIEKYREVAQKTISLST-IVDEQGRETLQDLIADPNPQP--DFLERVFSYEQIL 251 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E +ETLP R + +L EE L+ IG ++ + RV Q+ +A+ RLR + K Sbjct: 252 EKMETLPPRYQDILKKRIYEEQTLEAIGTSTKLSKERVRQIFQKALSRLREEFLK 306 >UniRef50_Q9KI19 RNA polymerase sigma factor rpoS n=6 Tax=Coxiella burnetii RepID=RPOS_COXBU Length = 352 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 13/239 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + + + + LV A R + DL++ G +GLL AVE++D +G Sbjct: 108 KGDPKARKQMIEANLRLVVKIARHYVNR---GLPFLDLIEEGNLGLLTAVEKFDPERGFR 164 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR + + ++ +P V + + +L QE+ AT +VA Sbjct: 165 FSTYATWWIRQTIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHL 224 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRV 182 + + + R+++ S D E G S+ D +P + + + +L+ + Sbjct: 225 IDKPVQEIRRIMDLA--PSATSIDVPISEDGQKSLVDTLADDNNIDPARLIQNVDLQDHI 282 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + L ER + V+ L + E+ L+ +G + + RV Q+ A+++LR L Sbjct: 283 ERWLAQLDERHREVVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLRHILE 341 >UniRef50_A8RNE4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNE4_9CLOT Length = 298 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 108/240 (45%), Gaps = 12/240 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + L + + + LV ++A + S+ L DL+Q G +GL+ AVE+Y+ Sbjct: 50 LAYLIQEGSDEARQKMISSNLRLVINQAKKYVTY-TQSLTLLDLIQEGNLGLIKAVEKYN 108 Query: 61 ALQGTAFTTYAVQRIRGAMLDELR---SRDWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 G F+TYA I+ A+ + +P + ++V +A ++ Q+ T Sbjct: 109 PELGFRFSTYASWWIKQAITRAISVLDKAIRLPVHFCEDIQKVKRATHEIMQQND-IVTP 167 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSN 177 ++ + G ++L++ N S + E ++ +D + +Q +++ Sbjct: 168 EKLKDITGFSEGKIEKILMNMN--HTISLETPVGEEA-TLGDFVEDTLTPSIEEQAMENA 224 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 +++ + +E L RE+ +L L + L+E+G + V R+ Q+ +A+++LR Sbjct: 225 MQREISRQMECLRPREQTILALRFGLNGQNPHTLEEVGKQMGVTRERIRQIEMKALRKLR 284 >UniRef50_A6DK04 RNA polymerase sigma factor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK04_9BACT Length = 404 Score = 250 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 15/240 (6%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 S Y E + +++ + + LV A + DL+Q G IGL++AVE+YDA Sbjct: 161 SYYRMENSV--NAMVEGNLRLVISIARKYSNSQEG---FLDLIQEGNIGLVSAVEKYDAS 215 Query: 63 QGTAFTTYAVQRIRGAMLDE---LRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETE 119 G F+TYA IR A+ L +P ++ ++ + +L Q+ GR AT E Sbjct: 216 FGYTFSTYATWWIRQAVSRARTELVRTMKLPANIMVKVNKIYRTERELFQKFGREATIDE 275 Query: 120 VAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH-GDSIELVTDDHQRENPLQQLLDSNL 178 V+E + + A R + Q S E + + + P ++ L Sbjct: 276 VSEAVELSPAKIRSLKRM--CQQPISLQTTVSEEHTGELGDIVSNDDDVLPDAEVEQKQL 333 Query: 179 RQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + ++ ++ L ERE+ +L + + E L+ I + R+ Q+ + A+K+LR Sbjct: 334 HESLVAMLDILNEREQEILRMRFGLADGEYHTLENIANEFGISRERIRQIETSALKKLRR 393 >UniRef50_Q9LD95 Sigma factor-like protein n=3 Tax=Eukaryota RepID=Q9LD95_ARATH Length = 547 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 13/238 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 G + L + LV H A + Q R + DLLQ G +GL+ +VE++ G Sbjct: 302 HRGRSSREKLITANLRLVVHIAKQYQNR---GLNFQDLLQEGSMGLMKSVEKFKPQSGCR 358 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F TYA IR ++ + +P +V +V++A QE ++ E+A Sbjct: 359 FATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGH 418 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWR-EEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 +G+ ++L +T S + + + + +T D E P + +R V Sbjct: 419 VGVSTEKLDKLLYNTR--TPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHV 476 Query: 183 MEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 + L +E+ ++ L + + +L EIG + + + RV QL S+A+ RL+ + Sbjct: 477 RNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNM 534 >UniRef50_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium RepID=Q9ZTL1_CYACA Length = 589 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 13/237 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 +G K+ + + LV A R + R V DL+Q G IGL+ VE+YDA +G F Sbjct: 327 KGRRAKNRMVAANLRLVICFAKRFRNR---GVAFQDLVQEGSIGLIRGVEKYDANRGFRF 383 Query: 68 TTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA IR + L +P V +E+ + +L LGR T+ E+A ++ Sbjct: 384 STYASWWIRQGIHKALLECSKMFRLPVHVNEMIKEIRRCSYELMNILGREPTKLEIAMKV 443 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREE---HGDSIELVTDDHQRENPLQQLLDSNLRQR 181 G+ +L + + ++ V +P ++LR Sbjct: 444 GMPEEKVIFLLQRAQTALSLEMPLRGSDSSLESRTLGDVVSSTASPSPEDSAFGTSLRYD 503 Query: 182 VMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + A+ L RE+ V+ + + + +L E+G++ V RV Q+ ++A+++LR Sbjct: 504 LERALSQLDFREREVIRMRFGLDDGRTKSLGEVGSLFCVTRERVRQIETRALRKLRD 560 >UniRef50_P35540 RNA polymerase sigma factor rpoS n=502 Tax=Proteobacteria RepID=RPOS_SHIFL Length = 330 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 13/239 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 V + + + + LV A R R + L DL++ G +GL+ AVE++D +G Sbjct: 85 RGDVASRRRMIESNLRLVVKIARRYGNR---GLALLDLIEEGNLGLIRAVEKFDPERGFR 141 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR + + ++ +P + + + +L +L + E+AE+ Sbjct: 142 FSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQ 201 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRV 182 L + D +ML N ++ S D + ++ + D + P D +++Q + Sbjct: 202 LDKPVDDVSRMLRL--NERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSI 259 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 ++ + L +++ VL + E L+++G + + RV Q+ + ++RLR L Sbjct: 260 VKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQ 318 >UniRef50_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=2 Tax=stramenopiles RepID=A5JEM2_9STRA Length = 404 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 22/244 (9%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 K ++ + LV A Q R V DL+Q G GL A E++D +G Sbjct: 143 KRASKSKSAIINANLRLVVSTAKAYQYR---GVSFQDLVQEGTCGLHKATEKFDPRKGFR 199 Query: 67 FTTYAVQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA I+ ++ + + V P V + +A E R T E+AE Sbjct: 200 FSTYATWWIKQGIMRAVTDQSRVVRLPVHVHDALFHIRRAKANFWTEHLREPTLAELAEA 259 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS---------IELVTDDHQRENPLQQLL 174 G+ + DT ++ S D+ + I + D + + P + Sbjct: 260 TGLTPQKI--VFYDTVKDKVSSIDKTVGIGTKTNSMEKSQIAISDMCKDSRNK-PEETAQ 316 Query: 175 DSNLRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIK 230 +LRQ + I TL RE+ V+ + Y + L+EIG++ V RV Q+ ++A+ Sbjct: 317 VESLRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIEARALH 376 Query: 231 RLRT 234 +LR Sbjct: 377 KLRQ 380 >UniRef50_Q1NP84 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NP84_9DELT Length = 256 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 140/235 (59%), Gaps = 7/235 (2%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 + L Y PL+++ A RL RLP V +DDL+ G +GL++A+ ++D + F Sbjct: 20 DPARRDELILTYTPLIKYIASRLASRLPPQVAVDDLISCGIVGLIDAINKFDPAKNVQFK 79 Query: 69 TYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 TYA RI+GAMLDELR+ DWVPRSVRR E+ + G+LE +LGR + E A LGI++ Sbjct: 80 TYAEFRIKGAMLDELRALDWVPRSVRRKITELEKISGELESKLGRPPDDEETAAALGIEL 139 Query: 129 ADYRQMLLDTNNSQLFSYD-----EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 AD+ ++L +T + D E GD E+ D + +P L R + Sbjct: 140 ADFHRLLDETKSVTFLDIDYLRSKVPDEIEGDVGEIFARDDK--DPFTALNLGETRNLLA 197 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +AI LPE+EKL + LYY EEL +KEIG VL ESR+SQ+HS+A+ RLR KL K Sbjct: 198 KAIGELPEKEKLTVALYYHEELTMKEIGEVLGYTESRISQMHSKAMLRLRAKLKK 252 >UniRef50_Q0AYK8 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AYK8_SYNWW Length = 260 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 91/236 (38%), Positives = 150/236 (63%), Gaps = 4/236 (1%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 E + + L + LV++ A RL + L + VELD+L+ G GL++A+E++D + Sbjct: 19 NEDIEARDQLIIHFAHLVKYVASRLAIHLSSLVELDELISYGIEGLIDAIEKFDHKRNIK 78 Query: 67 FTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 F TYA+ RIRG+M+D LRS DW+P S+R+ ++E+ +A +E LGR+A++ EVAE LG+ Sbjct: 79 FETYAITRIRGSMIDGLRSMDWIPVSLRQKSKELEKAYMNVEARLGRSASDAEVAEELGL 138 Query: 127 DIADYRQMLLDTNNSQLFSYDEWR-EEHGD---SIELVTDDHQRENPLQQLLDSNLRQRV 182 ++ ++ +L D + + S D++ E G+ + + +DH + + + + ++ + Sbjct: 139 NLDEFAVLLRDVAATTIISLDDFLPGEDGEQKKRMLDLLEDHNSISASEIVEFNEVKDLL 198 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +AI LP++EKLV+ LYY E L LKEIGA + + ESR+SQLH++AI RLR L K Sbjct: 199 AKAISRLPDKEKLVVYLYYYEGLTLKEIGATISLSESRISQLHTKAILRLRGSLSK 254 >UniRef50_A5G8Y3 RNA polymerase sigma factor n=9 Tax=Desulfuromonadales RepID=A5G8Y3_GEOUR Length = 251 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 99/229 (43%), Positives = 144/229 (62%), Gaps = 3/229 (1%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 D+ L ++PLV+ R+ LP ++ DDL A IGL++A ER+D +G F T+A Sbjct: 19 DRDELVVSHLPLVKFLVDRIASALPPHLDRDDLRSAAVIGLISAAERFDPSRGVMFKTFA 78 Query: 72 VQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADY 131 QRIRG ++DELRS+DW+ RS+R + + + LEQ LGRN T EVA +G+++ Y Sbjct: 79 EQRIRGTIMDELRSQDWLTRSLRDKFKRLEREFSCLEQRLGRNPTSEEVAAAMGLELEGY 138 Query: 132 RQMLLDTNNSQLFSY-DEWREEHGDSIE--LVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 +L + + S D W +E G + V +D E+P QL+ + + EAI+ Sbjct: 139 FHLLEEIHFLSFVSLDDAWMDEDGSPLGLLDVLEDKGVESPQNQLIARQTVENLAEAIDG 198 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 LPE+E++V+TLYY EELNLKEIG+VL + ESR+SQLHSQA+ RLR ++ Sbjct: 199 LPEKERIVITLYYYEELNLKEIGSVLSLTESRISQLHSQALLRLRGRMK 247 >UniRef50_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 11/238 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 G + L + +V H A + Q R + L DLLQ G +GL+ ++E++ G Sbjct: 303 HSGNRSREKLINANLRMVVHIAKQYQGR---GLSLQDLLQEGSMGLMKSIEKFKPQVGCR 359 Query: 67 FTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F TYA IR + + +P +V +V++A E N T+ E+A+R Sbjct: 360 FATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKR 419 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 +GI ++L W ++ + + +T D + E P + +R+ V+ Sbjct: 420 IGITTVRLERLLYMARMPLSMQQTVWADQE-TTFQEITADIEVEIPELCVAKQLMRKHVL 478 Query: 184 EAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + L RE+ ++ L Y E +L EIG+V + + RV QL S+A+ +L+ L Sbjct: 479 SLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQCLA 536 >UniRef50_D2SFP2 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SFP2_9ACTO Length = 360 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 9/235 (3%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + L + ++PLVRH A R R DDLLQ G +GL+ A++R+D +G Sbjct: 131 PRRERLREVLVEEHLPLVRHFARRFSNR---GEPFDDLLQVGTLGLIAAIDRFDPTRGVE 187 Query: 67 FTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F ++AV I G + R + W VPR ++ + A+G+L Q+ GR T +E+AE Sbjct: 188 FLSFAVPTITGEIKRHFRDQGWSVRVPRRLQELHLSLNAAVGELAQKNGRAPTPSELAEH 247 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 LGI A+ + L N + S DE DS L + ++ L+ + R+ + Sbjct: 248 LGIPRAEVLEGLAVANAYRSSSLDERLSGEDDSPTLAATLGEEDSALEGV---EYRESLQ 304 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + T+P RE+ +L L + + +I A + + + VS+L SQ + +LR L K Sbjct: 305 PLLATIPARERRILILRFFGNMTQSQIAADIGISQMHVSRLLSQTLAKLREGLLK 359 >UniRef50_A1HN10 RNA polymerase sigma factor n=4 Tax=Veillonellaceae RepID=A1HN10_9FIRM Length = 252 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 144/236 (61%), Gaps = 8/236 (3%) Query: 5 YTAEGVMD-KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 Y A + + L ++Y+PLV+ A R+ + LP ++ +DL+ G GLL+A+ER+D + Sbjct: 19 YQASKKPELREKLIEKYLPLVKMVAGRVAIGLPQHIDKEDLISYGFFGLLDAIERFDPSR 78 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F TYAV RIRG++ D +R +DW+P S+R+ R + + + +LE LGR+AT+ E+A+ Sbjct: 79 NIKFETYAVARIRGSIFDAIRVQDWLPASLRQKGRLLERTVAELENSLGRSATDAEIAQA 138 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 + + Q++ N S L +E+ + + N Q++ +++ + Sbjct: 139 MNFTVEQLHQLINQLNASTLIPLEEFVQNET-------VNQASPNLAQEIEQEEVKKTLA 191 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +AI+ LPE+E+LV++LYY E L LKEI +L++ E+R+SQLH++AI RLR L +L Sbjct: 192 KAIDRLPEKERLVISLYYYEGLTLKEISLILKLSEARISQLHTKAIFRLRGALSRL 247 >UniRef50_Q1Q6T7 Strongly similar to RNA polymerase sigma factor for flagellar operon n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6T7_9BACT Length = 259 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 90/239 (37%), Positives = 147/239 (61%), Gaps = 4/239 (1%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 Y + ++D+ L + LV++ + + LP+ V+ +DL++ G IGLL A ER+D Sbjct: 18 YKNKNLIDREKLVTENLSLVKYVVNKFIIYLPSFVDKEDLIEYGVIGLLEASERFDPCMD 77 Query: 65 TAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 T F T+AV RIRGA+LD LR++DW+PRSVR +A LEQ+L R+ E+A L Sbjct: 78 TKFGTFAVSRIRGAILDHLRAQDWLPRSVREKVSLAREAYATLEQKLNRHPLPEEIAAEL 137 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEW----REEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 ID A++ ++L++ N S +E + + +++ ++ D + +PL + ++ Sbjct: 138 KIDTAEWEKLLVEINFGMFLSLEEMNAKSEDGNKEAVGMLFADSKIGDPLSNIETEEEKE 197 Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 ++ AI+ LP REKLV+TLYY E+L L+EI +L++ ESRVSQ+H Q + LR+K+ K+ Sbjct: 198 LLVAAIKELPAREKLVITLYYYEDLMLREISQMLDISESRVSQIHHQGLFMLRSKVRKI 256 >UniRef50_D0Z2H8 RNA polymerase sigma factor n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2H8_LISDA Length = 294 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 103/241 (42%), Gaps = 15/241 (6%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 K + + + LV A + + + ++L D++ G IGL+ AVE++D +G F Sbjct: 46 GDAKSKKVMIESNLRLVVSIAKKYRG---SGMQLSDMIDEGNIGLITAVEKFDPERGFRF 102 Query: 68 TTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA I+ + + +P V + + + QL + T EVA+ L Sbjct: 103 STYATWWIKQTIERAIHNQARTIRLPVHVSKEINTILRTHKQLMKTNNSEPTHEEVADEL 162 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGD---SIELVTDDHQRENPLQQLLDSNLRQR 181 + D +L ++ + S+D+ ++ D P Q+ +++++ Sbjct: 163 DKSVEDISALLSY--DAPVMSFDQTISSEDSNSQTMASFISDDSDNGPDAQIDKNDIQKL 220 Query: 182 VMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + +E L R++ +L + E L+++ + + R+ QL ++ +L+ L Sbjct: 221 TLTMLEGLNPRDREILCRRFGLMGYEAQTLQQVAEEVGLTRERIRQLQVSSLNKLKNVLQ 280 Query: 238 K 238 + Sbjct: 281 R 281 >UniRef50_D2R4L7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=8 Tax=Planctomycetaceae RepID=D2R4L7_9PLAN Length = 320 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 109/244 (44%), Gaps = 11/244 (4%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + + V + + + + LV + A + + L DL++ G +GLL AVE +D Sbjct: 64 LAAAIADGDVRARDRMVRANLRLVVNIARGYTGK---GLSLQDLIEEGNLGLLRAVEGFD 120 Query: 61 ALQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATE 117 GT F+TYA I+ ++ L +P + + +A +L +ELGR T Sbjct: 121 PAVGTRFSTYASYWIKQSIKRALINSAKTIRIPAYMVELLSKWRRATARLTEELGRGPTP 180 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSN 177 EVA LG+ + + E G S+ + D + +NP +L++ + Sbjct: 181 EEVARVLGLAKKKLPIIKKAIRIYNSTP-QTDQSEAGWSLGEIVMDERLKNPEDELVEQD 239 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + + VME + T+ RE VL + + LKEIG L + RV Q+ ++A+ +L Sbjct: 240 VLKHVMEMLHTMDSREATVLRMRFGLGDTTPHTLKEIGESLGLTRERVRQIETEALGKLA 299 Query: 234 TKLG 237 L Sbjct: 300 DGLK 303 >UniRef50_D1N7J7 RNA polymerase sigma factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7J7_9BACT Length = 428 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 99/229 (43%), Gaps = 10/229 (4%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + + + + LV A + + R + +DL+Q G +GLL A+E++D G F+TYA Sbjct: 187 RQKMIEANLRLVISIAQKYRNR---GLPFNDLIQEGNLGLLRALEKFDFRLGNKFSTYAS 243 Query: 73 QRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I+ + + + +P + + A + Q GR E+A L + +A Sbjct: 244 WWIKHNISRSIAEQSRVIRIPAHMVHAINSMTWAEQRFIQSHGREPEIDELAAVLEMPVA 303 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + + + E G +E + D NP++ L ++ E + TL Sbjct: 304 RISAIRKMSCQTISLQAPVSSSEDGAMLEDLIADDSTANPVRDFARKILYDKLYEMLRTL 363 Query: 190 PEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 PER++ ++ L + L L +I + R+ QL ++ I+ LR+ Sbjct: 364 PERDQQIIILRFGLFGQPCLPLVDISRRFNLTRERIRQLEAKIIENLRS 412 >UniRef50_A0Q044 RNA polymerase sigma factor n=30 Tax=Clostridium RepID=A0Q044_CLONN Length = 242 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 2/235 (0%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A +K + ++Y+PLV++ A R+ + +E +DLL G +GL++A ++D +G Sbjct: 4 ASNDHNKEEIVKKYIPLVKYIASRVIIGKTKYIEFEDLLGYGMLGLMDAFNKFDKSKGMK 63 Query: 67 FTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 F+TYA RIRG+M+DE+R + + + AI L++ ++A+ L + Sbjct: 64 FSTYASIRIRGSMIDEIRKNSPISKGAMDKLNKYNSAIESLQKRNLAEPNIKDIAKELDM 123 Query: 127 DIADYRQMLLDTNNSQLFSYDEWR--EEHGDSIELVTDDHQRENPLQQLLDSNLRQRVME 184 + ++ N + S ++ E+ S+ +D NP ++ + + + + Sbjct: 124 TVKQVGEIENFINYISIVSLEDLIFSEDDDISLMGTIEDINSPNPEEEYENDEKLEYLSK 183 Query: 185 AIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 ++ L E+++ VL+LYY EE+ LKEIG +L V ESRV QLHS+AI LR +L KL Sbjct: 184 GLDMLNEKDRTVLSLYYYEEMTLKEIGKILGVSESRVCQLHSRAIVHLRKELAKL 238 >UniRef50_Q6A8Y3 RNA polymerase principal sigma factor HrdD n=2 Tax=Propionibacterium acnes RepID=Q6A8Y3_PROAC Length = 312 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 13/237 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A+G + + LV A + + + L DL+Q G GL+ AVE++D +G Sbjct: 74 ADGDEALAHFVRANLRLVVSVARKYGR---SQMPLLDLVQEGNTGLIRAVEKFDYAKGFK 130 Query: 67 FTTYAVQRIRGAMLDELRSRDWV---PRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA +R A+ + + + P V +V+ A LE++LGR E+A+ Sbjct: 131 FSTYATWWVRQAISRGIAQQGRIVRLPVHVAEQVNQVSAARRNLERQLGREPETFEIADE 190 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRV 182 L I +++ S D E+ GD S+ + P +LD+ R R+ Sbjct: 191 LEITEERVIELIRFGR--DHVSLDAPVEDDGDTSLGDLIARETSPGPDDIVLDAEDRSRL 248 Query: 183 MEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 ++ L ER V+ Y + L +IG V + RV Q+ A+ +R + Sbjct: 249 EGLLDDLDERSADVVRRRYGLVDGRQAKLADIGKVWGITAERVRQIERAALASMRQR 305 >UniRef50_D0LRC2 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRC2_HALO1 Length = 436 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 14/242 (5%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 A G ++ + LV A R + L DL+Q G +GL++AV R+D +G Sbjct: 197 ARGARLRNEFVHANLRLVVTMARRYDR---GGMPLADLIQEGNLGLMHAVSRFDYRRGLR 253 Query: 67 FTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA IR A+ L + +P + +++A+ +L ELGR T +E+A+ Sbjct: 254 FSTYACWWIRHAIGRALADKSRAVRIPVHMLEAQQQLAKVQAKLIGELGREPTPSELAKA 313 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQREN--PLQQLLDSNLRQ 180 + +A QM Q S D + D + D E+ P+ L L Sbjct: 314 AQVPLAKLNQMHRYLMG-QPMSLDRPLYDDDDRAFGDMLADPLSEDSSPVDDLTTQTLTS 372 Query: 181 RVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 RV ++ L E VL + EE +EIG ++ R+ Q+ + A+ +LR L Sbjct: 373 RVETLLDHLTPIEADVLRQRFGLMDDEERTFREIGDQYDLSRERIRQIQNAALGKLRRAL 432 Query: 237 GK 238 + Sbjct: 433 ER 434 >UniRef50_Q73P62 RNA polymerase sigma factor n=2 Tax=Treponema RepID=Q73P62_TREDE Length = 286 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 10/240 (4%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 L K+ L + V + A + Q + + L DL+ G IGL+NA ER+D Sbjct: 38 AKLAEKGDEDAKNMLVNSNLRFVVNVAKKYQNQ---GLPLMDLISEGNIGLMNAAERFDV 94 Query: 62 LQGTAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F +YAV I+ ++L + +P + ++ +A +++ Sbjct: 95 SKGYKFISYAVWWIKQSILKAICEKSRMIRLPLNRANELVQIEKAKKEIDFSGNETKELN 154 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNL 178 E+A L +D + ++ + E S+ D + P +D +L Sbjct: 155 EIAGILNMDNSMVHTIMNAAREPISIDAPVFDEPGSSSVNDFLQDETHQMPEDYAMDMSL 214 Query: 179 RQRVMEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 R V E ++ L +RE ++ + L+LKE+G + + + R+ Q+ +A+++L+ Sbjct: 215 RDEVNELLKNLDDREAEIIRYRFGLGGYAPLSLKEVGLIFNLTKERIRQIEKKALQQLKK 274 >UniRef50_C1RMF4 RNA polymerase sigma factor n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RMF4_9CELL Length = 328 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 5/233 (2%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + L YVPLV A R+ +RLP++VE DL+ G GL++A+E+Y + F + Sbjct: 91 AKAREVLILHYVPLVTAVAGRIGMRLPSTVEHADLVSYGMFGLIDAIEKYCTDRAVKFES 150 Query: 70 YAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 YA RIRGA++DELR+ DWVPRSVR AR V +A G+LE L R TE EVA+RL + ++ Sbjct: 151 YASSRIRGAIIDELRAMDWVPRSVRTKARAVDRAYGELEATLHRAPTEAEVAQRLELPVS 210 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGD-----SIELVTDDHQRENPLQQLLDSNLRQRVME 184 + R + + + + DE D ++ D + ++P + + + Sbjct: 211 ELRAVYSQLASVNIAALDEMLAGSDDRPGAATLADTLGDRRADDPAGSVEAQETKYLLSR 270 Query: 185 AIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 AIE L ERE+LV+ LYY E + L EIG VL V ESR+SQ+H+ A+ RLRT+L Sbjct: 271 AIECLGERERLVVVLYYYESMTLAEIGRVLGVTESRISQIHTAAMGRLRTRLR 323 >UniRef50_C4ZA81 RNA polymerase sigma factor n=3 Tax=Clostridiales RepID=C4ZA81_EUBR3 Length = 255 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 131/226 (57%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L Y LVR A RL + L +VE DDL+ G GL++A+++++ + F TYA Sbjct: 22 REQLIIEYAQLVRLVAGRLSMYLGHNVEYDDLVSYGIFGLIDAIDKFNLEKNVKFETYAS 81 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGA+LD++R DW+PR+VR+ R++ +AI +E G+ A + ++A+ L I + Sbjct: 82 LRIRGAILDQIRKMDWIPRTVRQRQRKIDEAIKNIELRTGKTANDADLAKELSISEDELC 141 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPER 192 + + S DE+ E + + + P + + L+ ++++++ L E+ Sbjct: 142 SWQSQLKVTNVVSLDEFDESGPEPVMDAAHNSHYAQPEEIVTQEELKTMLVKSLDNLTEK 201 Query: 193 EKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 E+ V+ LYY E+L LKEI +LEV ESRVSQLH++ + ++R +G Sbjct: 202 ERRVIELYYYEDLTLKEISNILEVSESRVSQLHTKGLIKMRKVMGP 247 >UniRef50_B9CP17 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CP17_9ACTN Length = 276 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 116/241 (48%), Gaps = 10/241 (4%) Query: 3 SLYTAE-GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 + Y + L ++ LVR A + + R LDDL+Q G IGL+ A++R+D Sbjct: 36 AQYQETHDSEVRDQLIVSHLNLVRFLASKFKNR---GEPLDDLIQVGTIGLIKAIDRFDP 92 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G FTTYA I G + R + W VPR ++ + +V Q +L EL R+ + Sbjct: 93 SRGLEFTTYATPTIMGEIKRHFRDKGWSVRVPRRLQELSAKVNQITDELTTELQRSPSIE 152 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREE-HGDSIELVTDDHQRENPLQQLLDSN 177 E+A++LG+ + + + + + + GD + D + E+ + L S+ Sbjct: 153 EIAKKLGVSVDEVLEAMESSGAYSSVPLEGGGSSVDGDEAPSIIDQYITED--EALAGSD 210 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 R + +AI RE+ ++ + + E L EI L + + +VS+L + +KR++ K+ Sbjct: 211 DRIVLEDAIADFSPREQEIIRMRFVEGLTQVEIAEKLGISQVQVSRLLRRTLKRIQEKID 270 Query: 238 K 238 Sbjct: 271 P 271 >UniRef50_P10726 RNA polymerase sigma-D factor n=24 Tax=Bacillales RepID=RPSD_BACSU Length = 254 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 143/234 (61%), Gaps = 2/234 (0%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + L +RY+PLV + R+ V LP SV DDL+ G +GL +A+E++D + F Sbjct: 19 KDPKAGDDLMRRYMPLVTYHVGRISVGLPKSVHKDDLMSLGMLGLYDALEKFDPSRDLKF 78 Query: 68 TTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 TYA RIRGA++D LR DW+PR+ R ++V AI +LEQ RN + E+AE LG+ Sbjct: 79 DTYASFRIRGAIIDGLRKEDWLPRTSREKTKKVEAAIEKLEQRYLRNVSPAEIAEELGMT 138 Query: 128 IADYRQMLLDTNNSQLFSYDEWR--EEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEA 185 + D + + + L S DE ++ G++I+++ D + P ++++ L ++ E Sbjct: 139 VQDVVSTMNEGFFANLLSIDEKLHDQDDGENIQVMIRDDKNVPPEEKIMKDELIAQLAEK 198 Query: 186 IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 I L E+E+LV++L+Y+EEL L EIG VL + SR+SQ+HS+A+ +L+ L K+ Sbjct: 199 IHELSEKEQLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLKNLLEKV 252 >UniRef50_Q1Z2N9 RNA polymerase sigma factor n=9 Tax=Photobacterium RepID=Q1Z2N9_PHOPR Length = 291 Score = 245 bits (627), Expect = 8e-64, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 109/240 (45%), Gaps = 14/240 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 K + + + LV A + + + ++L DL+ G IGL+ +VE++D +G F Sbjct: 44 GDKEAKKVMIESNLRLVVSIAKKYRG---SGMQLSDLIDEGNIGLITSVEKFDPERGFRF 100 Query: 68 TTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA I+ + + +P V + + + QL ++ + T EVAE+L Sbjct: 101 STYATWWIKQTIERCIHNQARTIRLPVHVSKEINTIIRTHKQLMKKNNQEPTREEVAEKL 160 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEH--GDSIELVTDDHQRENPLQQLLDSNLRQRV 182 + D +L ++ + S+D+ + SI + D + P Q+ +++ Sbjct: 161 ERSVDDISSVL--AYDAPIVSFDQTINDDANSQSISVFIADDSSDKPESQVDKDDIKGLA 218 Query: 183 MEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + +E L +R++ +L + E L+++ + + R+ QL ++K+L+ L + Sbjct: 219 LAMLENLNQRDREILCRRFGLLGYEVQTLQQVANEVGLTRERIRQLQVSSLKKLKNTLER 278 >UniRef50_B2A375 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A375_NATTJ Length = 250 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 137/240 (57%), Gaps = 2/240 (0%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + S + L Y LV+ + ++ + + DDL+ G IGL++A++++D Sbjct: 6 ITSYQDSGDRQQLEKLISEYSYLVKKQVDKVNYPSISGLNRDDLISFGVIGLIDAIKKFD 65 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120 + F YA RIRGA+LD LR D+VPR++R + + +LEQ+LGR T E+ Sbjct: 66 INRNVPFEAYANIRIRGAILDGLRKFDFVPRNLREEMKTLHSEYRKLEQKLGRTPTNNEL 125 Query: 121 AERLGIDIADYRQMLLDTNNSQL--FSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNL 178 A ++ I A+ ++ TN S EE ++E + D +P ++ + Sbjct: 126 AYQMSISEAELDKLWQATNCVIPSYLSDYITAEEGELTLEDIYPDSNSPDPQSRIDEKTT 185 Query: 179 RQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +Q + +AI+TLP++EKLVL+LYY EEL LKEI +LE+ ESR+SQLHS+A+ RLR KL K Sbjct: 186 KQELGQAIDTLPQKEKLVLSLYYYEELTLKEIAKILELTESRISQLHSKAVLRLRGKLAK 245 >UniRef50_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GEJ9_PHATR Length = 329 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 23/243 (9%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 K +L + + LV A R Q R + DL Q G +GL A E++D +G F+TY Sbjct: 76 RAKAALTESNIRLVVSIAKRYQHR---GLSFQDLAQEGILGLTRACEKFDPERGFRFSTY 132 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A I+ +++ + + +P + + + +L+ ELGR+A E+ E+ + Sbjct: 133 ASWWIKQSIMRAIADQGRTIRLPVHIHDQINALRKVERELKAELGRDARLEEITEKSTLT 192 Query: 128 IADYRQMLLDTNNSQLFSYDEWRE------------EHGDSIELVTDDHQRENPLQQLLD 175 + + + + G ++ V D + + P ++ Sbjct: 193 AEKIEFLNRVSQQDVSMEQELRTSKSKGSSAGLGGPDGGLTLGDVMGDPEAQ-PAEEASY 251 Query: 176 SNLRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKR 231 L+ + I TL RE+ V+ + + + L+EIG V R+ Q+ S+A+ + Sbjct: 252 QMLKDDISRLICTLNSREQAVIRMRFGLDDGKAKTLEEIGRRFSVTRERIRQIESRALHK 311 Query: 232 LRT 234 LR Sbjct: 312 LRQ 314 >UniRef50_A4J745 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J745_DESRM Length = 251 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 92/235 (39%), Positives = 140/235 (59%), Gaps = 3/235 (1%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + + ++PLV+H A R+ V+LP+ + +DL G IGL+ A+++YD G +F Sbjct: 14 RDPEARQKIILLHLPLVKHLAGRVAVKLPSFILREDLESYGVIGLMEALDKYDPAMGHSF 73 Query: 68 TTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 +YA RIRGAMLDE+R ++W+PR+ + + + +LE+E G T +A+ +GI Sbjct: 74 DSYAYHRIRGAMLDEVRRQNWLPRTAWQKNQLLKNTRERLEREQGEVITNEVLAKEMGIP 133 Query: 128 IADYRQMLLDTNNSQLFSYD-EWREEHGDSIE--LVTDDHQRENPLQQLLDSNLRQRVME 184 + + RQ++ + N + S D E G + + +D +PL + + ++ + E Sbjct: 134 VEEVRQLIFNANKMYIQSLDEEVAGHDGSQMSKLELLEDTNSPDPLSIVEEKESKRLLAE 193 Query: 185 AIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 AIETL EREKL+L LYY E L LKEIG VLEV ESRV QLHSQ +KRL+ L + Sbjct: 194 AIETLSEREKLILALYYSEGLTLKEIGQVLEVSESRVCQLHSQVMKRLKKTLESM 248 >UniRef50_B8FK28 RNA polymerase sigma factor n=2 Tax=Proteobacteria RepID=B8FK28_DESAA Length = 252 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 95/236 (40%), Positives = 148/236 (62%), Gaps = 4/236 (1%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 ++ + L +Y L + A RL +RLP SV +DDL+ AG +GLL+A+++YD +G Sbjct: 11 KSKERAKRDELITKYAYLAKLCAHRLAMRLPPSVNVDDLISAGIMGLLDALDKYDEGRGV 70 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA RIRGAMLDELR+ DWVPRSVR+ +E+ QA+ ++E+ R A E+A LG Sbjct: 71 KFRTYAEFRIRGAMLDELRAMDWVPRSVRKKVQEIEQAVNRVEKRESRPADAEEIANELG 130 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGDSIE----LVTDDHQRENPLQQLLDSNLRQR 181 +D+ Y+ ML +L S DE + ++ + V NP + L+DS ++ Sbjct: 131 VDMDTYQNMLSKAGGIELVSLDEPLWSNDNTKDGRRTHVDLLEDNANPDRDLMDSEFKKI 190 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 + ++I +L +E+ +L+LYYQ+EL LKE+G V+ + ESR+ Q+H+Q + +LR+KL Sbjct: 191 LAQSISSLTPKEQQILSLYYQDELTLKEVGEVMGLTESRICQIHTQCMIKLRSKLK 246 >UniRef50_Q21TX3 RNA polymerase sigma factor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TX3_RHOFD Length = 726 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 19/241 (7%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 + + + LV A + L + LDDLLQ G IGL+ AV+RYD +G +T Sbjct: 369 RQARDQMVIANLKLVLFIAKKY---LYSGQPLDDLLQEGNIGLIKAVDRYDWRRGFKLST 425 Query: 70 YAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR + + + +P V +++A A +E GR T E+A+++ + Sbjct: 426 YATWWIRQQVGRYVADKSKTIRLPVHVYVKTQQIAHAAHAIELATGRMPTIEEIAKKMEM 485 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQ--RENPLQQLLDSNLRQRVME 184 + + L + DS+ + +P+ + DS L + Sbjct: 486 PASKVAPLALAIPEPLPI-----HDVDVDSLIAIDAQDNYVARDPMDIVSDSQLIGSIDR 540 Query: 185 AIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLR--TKLGK 238 + TL +++ VL L + E + L+EIG LEV R+ Q+ ++AI L+ +L + Sbjct: 541 FLATLKPKDEQVLRLRFGIGAHEAMTLEEIGTRLEVTRERIRQIEAKAICHLKHPARLER 600 Query: 239 L 239 L Sbjct: 601 L 601 >UniRef50_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZV6_PHYMT Length = 419 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 106/233 (45%), Gaps = 14/233 (6%) Query: 11 MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 KH L + LV A R R +E DL+Q G GL+ A+E+++ +G +TY Sbjct: 175 KAKHRLVEANYRLVVSIAKRYIRR---GLEFLDLIQEGNRGLMRAIEKFNIDKGCKLSTY 231 Query: 71 AVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGID 127 A I +L + + +P + ++ A +L +L R T E++E + I Sbjct: 232 ATFWIVQKILRAVADQARIIRLPVHIVDRINIISMAKSKLRLKLHREPTIEELSEFINIS 291 Query: 128 IADYRQMLLDTNNSQLFSYDEWREE-HGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 + + +++ + S + E S+ D +P +L ++ + E + Sbjct: 292 --EKKLRIIEIIKKKPISLEARVGEKDDSSLGEFISDPDSLSPHDYMLQEIMKNTLNEIL 349 Query: 187 -ETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 +TL +RE+ +L + Y + L+E+G V V R+ Q+ ++A +RLRT Sbjct: 350 EDTLTDREEKILRMRYGLSNGKVHTLEEVGNVFGVTRERIRQIEAKAFRRLRT 402 >UniRef50_C8QWD0 RNA polymerase sigma factor n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWD0_9DELT Length = 262 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 97/235 (41%), Positives = 139/235 (59%), Gaps = 7/235 (2%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 + L Y PL+++ A RL RLP V +DDL+ G +GL++A+ ++D + F Sbjct: 26 DPAKREELILNYTPLIKYIASRLASRLPPQVAVDDLISCGIVGLIDAINKFDPAKNVQFK 85 Query: 69 TYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 TYA RI+GAMLDELR+ DWVPRS+RR E+ Q +LE +LGR AT+ E A LGI + Sbjct: 86 TYAEFRIKGAMLDELRALDWVPRSIRRKVTELEQVCSELEVKLGRPATDEETATALGIGL 145 Query: 129 ADYRQMLLDTNNSQLFSYD-----EWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 +Y ++L +T + + E G+ E+ D + +P L + + Sbjct: 146 EEYHRLLDETKSVSFLDIEYLRRQAPAEVEGNLAEVFASDDK--DPFAALNLGETKALLA 203 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 +AI LPE+EKL + LYY EEL ++EIG VL ESR+SQ+HS+A+ RLR KL K Sbjct: 204 KAINELPEKEKLTVALYYHEELTMREIGEVLGYTESRISQMHSKAMLRLRGKLKK 258 >UniRef50_C9YEL0 RNA polymerase sigma factor n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YEL0_9BURK Length = 273 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 109/236 (46%), Positives = 161/236 (68%), Gaps = 2/236 (0%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 +YTA+G +D+ +L ++Y PLVR A + +LP SVE+DDL+Q G IGL +A+ RY+A Q Sbjct: 36 MYTAKGQLDRSALIKQYQPLVRRLAHHMMAKLPPSVEVDDLIQVGLIGLSDALSRYEASQ 95 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G F T+A QRIRGAMLDELR DW+ R R++ +E+ A+ +LE +LGR+ E+E+A Sbjct: 96 GVQFETFATQRIRGAMLDELRENDWMSRGSRKSQKEIETALRKLEHKLGRSPAESEIATE 155 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWR--EEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 LG+ ++DY+ +L +QL ++ E D+ Q +PL L D LRQ Sbjct: 156 LGMSLSDYQSLLGKVRGTQLVYLEDMARRNEDDDTYLDRHVADQDADPLNMLRDQRLRQS 215 Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 +++AI+ LPERE+ ++++YY++++NLKEI AVL+V ESRV QLHSQ+I RLR K+ Sbjct: 216 LVDAIKCLPEREQYIMSMYYEQDMNLKEIAAVLDVTESRVCQLHSQSIARLRAKMR 271 >UniRef50_A6FX97 RNA polymerase sigma factor n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6FX97_9DELT Length = 421 Score = 242 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 19/242 (7%) Query: 12 DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYA 71 K+ + + LV A R L + L DL+Q G +GL+ AV+R+D +G F+TYA Sbjct: 180 SKNKFVKANLRLVVTIARRFDHGL---MPLQDLVQEGNLGLMKAVDRFDPTRGYRFSTYA 236 Query: 72 VQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 IR A+ L ++ +P V + + + + +LE + G T ++A+ G+ Sbjct: 237 TWWIRHAINRALANKGRTVRLPAHVSADLQRLRRVTRELEAKTGETPTPEQLAQAAGLSK 296 Query: 129 ADYRQMLLDTNNSQLFSYDEW-REEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIE 187 R++ T + S D ++ + +D L L + + +A+ Sbjct: 297 TRVRKLSKLTLDP-TVSLDAPSHDDDARGLLDRLEDASVPVAADILEHQALNEHLRDALY 355 Query: 188 TLPEREKLVLTLYYQ-----------EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236 L E +L Y E + L+++G + R+ QL +A+ +LR + Sbjct: 356 NLQPIELDILKRRYGIATSEAESVDFEPMTLRQLGERHSLSRERIRQLQERALTKLRREF 415 Query: 237 GK 238 + Sbjct: 416 AR 417 >UniRef50_Q4BV73 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BV73_CROWT Length = 386 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 9/237 (3%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 L G K + Q + LV + + Q + +E DL+ G +GL+ AVE+++ Sbjct: 14 QLILKRGKRAKEKMIQANLRLVVAVSKKYQGK---GLEFMDLVSEGNLGLIRAVEKFEYD 70 Query: 63 QGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETE 119 +G F+TYA IR A++ + + VP + ++ + ++ Q+ GR+AT E Sbjct: 71 KGYKFSTYAYHWIRQALVRAICDKGRTIRVPVHINEEISKLKKVQLEIRQKYGRSATVRE 130 Query: 120 VAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLR 179 ++ERL I R + N +E ++ D + + L + + Sbjct: 131 LSERLEISPEKIRVLRSVNNPMLSLDQKVLGDEDNSTLLSFLADPNG-DLQKFLDNLGNK 189 Query: 180 QRVMEAIETLPEREKLVLTLYYQE--ELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + V + + L +E+ VL YY E L L EIG + + RV + + A+ +L+ Sbjct: 190 ELVEQCLCGLKPQEQRVLREYYLETPSLTLNEIGKKMNLSRERVRHIKNNALDKLKQ 246 >UniRef50_C0QXY0 RNA polymerase sigma factor n=2 Tax=Brachyspira RepID=C0QXY0_BRAHW Length = 275 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 142/233 (60%), Gaps = 6/233 (2%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPAS--VELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70 + +L +Y PLV++ A ++ V + + +E DL+ G GL++A+++Y+ + F TY Sbjct: 38 REALIIKYSPLVKYVASKISVNMGSHKHIEFQDLVGFGSFGLMDAIDKYNPNRDIKFKTY 97 Query: 71 AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130 AV RIRGA+ DELR D++PRS+R++ +E+ +A LE L RN E+A+ LGI I+ Sbjct: 98 AVTRIRGAIYDELRKLDYLPRSIRKDVKEIEKAREILEARLSRNIKPQEIADMLGIPISK 157 Query: 131 YRQMLLDTNNSQLFSYDEW--REEHGDSIELVTDDHQRE--NPLQQLLDSNLRQRVMEAI 186 Y + + + S + + D I ++ + NP +++ +++ A+ Sbjct: 158 YNETMKRYIEASPTSLSDVWYVGDDSDEISVIDTLKSNDKTNPEYLAEREDVKNKIIAAL 217 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 + LPE+E+ VL LYY ++L LKEIG VLEV ESR+SQLH++AI++LR L ++ Sbjct: 218 KKLPEKEQQVLILYYYDDLTLKEIGKVLEVSESRISQLHTKAIQQLRYSLSEI 270 >UniRef50_Q6KI01 RNA polymerase sigma factor n=1 Tax=Mycoplasma mobile RepID=Q6KI01_MYCMO Length = 488 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 107/255 (41%), Gaps = 27/255 (10%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 +G ++L + LV + A + + R + DL+ G GL+ A +YD +G Sbjct: 234 RKGKKAFNALIHHNLRLVINNAKKYKNR---GLSFIDLISEGNAGLIKAATKYDYRRGFK 290 Query: 67 FTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA +R A+ + + VP + ++ + +L QELG T+ ++AE+ Sbjct: 291 FSTYATWWVRQAITRAVADQARIVRVPVHMVETINKIIKIERELHQELGVPPTDKQIAEK 350 Query: 124 LG--IDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQ 180 G + + N S D+ + S D +PL+ + L Sbjct: 351 YGNNFTAEKVQYIRKI--NIDPISLDKSIGKDDDSSFSDFVKDESVVSPLEFASQNELSG 408 Query: 181 RVMEAIET-LPEREKLVLTLYYQEE----------LNLKEIGAVLEVGESRVSQLHSQAI 229 + + +E L E E+ ++ + +L+E+ A L++ + +V L S+ + Sbjct: 409 ILTDILEKHLDEAERDLIKKRFGIGVDKDGNRISSHSLEELAAELQISKEKVRSLESKIL 468 Query: 230 KRL-----RTKLGKL 239 ++L R KL + Sbjct: 469 RKLKHPQKRKKLKEF 483 >UniRef50_C1A692 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A692_GEMAT Length = 295 Score = 242 bits (618), Expect = 9e-63, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 13/242 (5%) Query: 1 MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60 + A L +R + V A + Q R + L DL+ G +GLL A ++D Sbjct: 47 LAKKIRAGDQDALQELVKRNLRFVISVAKKYQNR---GLPLIDLIGEGNVGLLTAARKFD 103 Query: 61 ALQGTAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATE 117 QG F +YAV IR A+L L + VP + + + +A L Q+L R + Sbjct: 104 PDQGVKFISYAVWWIRQAILSSLARQGRTVRVPLNRTADLSRIIKASEILRQKLRREPSP 163 Query: 118 TEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDS 176 E+A+ G+ + + + N+ D + GD S+ + + ++ ++ Sbjct: 164 EELAQVTGLSVDVVQSL--AALNTGDVRLDAPMDPDGDRSLIERFVADEMPDTEEEAMNR 221 Query: 177 NLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRL 232 L + +A+ TLP R+ VL LY+ E L+EIG++L V RV QL +A+KRL Sbjct: 222 FLTDEIEQALSTLPPRDAKVLRLYFGLEGGREHTLEEIGSMLGVTRERVRQLRDRALKRL 281 Query: 233 RT 234 R Sbjct: 282 RE 283 >UniRef50_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 13/230 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 + L + + LV A + R + DL+Q G GL+ AV++Y+ F TYA Sbjct: 281 RKELAEANLRLVVSIAKNYRNR---GLPFSDLIQEGNRGLMRAVDKYEWRLEFKFGTYAT 337 Query: 73 QRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 +R + L VP + + G+L GR T E+AE LG+ Sbjct: 338 WWVRQGITRALHDNARTVRVPCHQISLLSRMEKLRGELTVATGREPTSEELAEALGVKPE 397 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDS-IELVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 + R + S ++ G+ +E D P + + + L++R+ E +++ Sbjct: 398 EARSL--RIVGRHPVSLNDSVGGDGERALEDFLSDTHISPPGEHVDANLLKERIGEVLKS 455 Query: 189 LPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 L RE+ V+ L + L E+ + R+ Q+ ++ + +LR Sbjct: 456 LAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLRQ 505 >UniRef50_Q2S172 RNA polymerase sigma-70 factor n=91 Tax=Bacteroidetes/Chlorobi group RepID=Q2S172_SALRD Length = 313 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 13/239 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 H L + + V A + Q + + L DL+ G GL+ A +R+D +G F Sbjct: 72 GDEEALHKLCRANLRFVVSVAKKYQGQ---GLSLADLINEGNYGLIKAAKRFDETRGFKF 128 Query: 68 TTYAVQRIRGAMLDELRSRDWVPR---SVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +YAV IR A+L L + V R + ++ +A +L+Q+L R E+AE L Sbjct: 129 ISYAVWWIRQAILQALAEQSRVVRLPLNRIGTISKIRKASARLQQDLDRKPNIEELAEEL 188 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVM 183 ID+ R+ + T+ + S D E D S+ V D ++P +++L +++ + Sbjct: 189 EIDVQKVREAMKHTS--RHLSMDAPFNEEDDNSLLDVLPDEDNDSPDEEMLSESVKIDIE 246 Query: 184 EAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 A+ L +RE + LY+ L L+EIG ++ RV Q+ +A+++LR + K Sbjct: 247 RALSALHDREAEITRLYFGIGREHPLTLEEIGKRFDLTRERVRQIKEKALRKLRQRHSK 305 >UniRef50_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKA7_9BACT Length = 301 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 6 TAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGT 65 A ++L + V A R + + + D++ G +GL+ A +R+D + Sbjct: 59 QAGDEDALNTLILCNLKFVVSIANRYRN---TGLPIADIINQGNLGLVEAAKRFDHTKDV 115 Query: 66 AFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 F +YAV IR +++ L + +P ++ A +L ++L R T +E+AE Sbjct: 116 KFISYAVWWIRQSIIQALAEQSGTVKLPIKQAGILYKINGATEKLNKKLNREPTASELAE 175 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 +L +D AD +L + N S + ++ D + + ++ + ++ L+ + Sbjct: 176 QLEMDEADIENVLRVSRNY--LSLEAPIKDGEDRSFIDLLESGTKDIEEDIISKTLKTAL 233 Query: 183 MEAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 + ++ L ERE ++ + L+EIG ++++ RV QL ++A+ +LR K Sbjct: 234 DDIVDELDERESQIIEWRFGLNEEAPKTLEEIGELMDISRERVRQLETRALSKLRKK 290 >UniRef50_C5RI15 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RI15_CLOCL Length = 427 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 11/244 (4%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTA 66 + +L LV ALR + S + D+ QAG +GL+ A E++D +G Sbjct: 176 RKREQALDNLVNANKKLVWEIALRYKQFSTVSFDNSDMYQAGVLGLMKAAEKFDISKGNQ 235 Query: 67 FTTYAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 F+TYA +R ++ + +P +R + + E GR A++ E+A Sbjct: 236 FSTYATWWVRQSITRSIADYSTTIRIPVHMREKIIKYVSTENKFWNENGRVASKEELANL 295 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWRE-EHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 LGI + + + + + L S D + G + D + +P + + L++ + Sbjct: 296 LGISSEEVNYLQVYQDVANLTSLDIPIGADEGSFLGEFIPDDKHRSPEKSAEEGELKREL 355 Query: 183 MEAIE-TLPEREKLVLTLYY----QEELNLKEIGAVLEVGESRVSQLHSQAIKRLR--TK 235 E E L +E +L + L+EIG V V R+ Q+ ++AI +L+ Sbjct: 356 KEICEGRLTPKETRILNFRFGFIDGRTHTLEEIGHVENVTRERIRQIEAKAISKLQNPKI 415 Query: 236 LGKL 239 L +L Sbjct: 416 LERL 419 >UniRef50_Q7XXT0 Plastid sigma factor 2A n=13 Tax=Poaceae RepID=Q7XXT0_ORYSJ Length = 564 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 12/230 (5%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 K+ + V LV A + +EL DL+Q G GL+ E++DA +G F+TY+ Sbjct: 324 KNRMVTSNVRLVISIAREFEG---PGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSH 380 Query: 73 QRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIA 129 I+ AM + + +P + + V + I +L ++L R T E+A G+ I Sbjct: 381 WWIKQAMRKSVSEQSQIFRLPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIK 440 Query: 130 DYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETL 189 + S D + + VT D E + L ++++ V +A++TL Sbjct: 441 RVEAAVNL--PKYSVSLDSKIGSTDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTL 498 Query: 190 PEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTK 235 RE+ V+TL + E L+EIG + V R+ Q+ S A ++LR+K Sbjct: 499 TTRERQVVTLRFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSK 548 >UniRef50_D1C190 RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C190_SPHTD Length = 264 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 94/236 (39%), Positives = 141/236 (59%), Gaps = 1/236 (0%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 + +L ++Y PLV++ RL+V L A+++ DDLL G IGL+ A++R+D Sbjct: 20 RYAIERDGSTREALIRQYAPLVKYVVDRLRVALTATLDRDDLLGYGTIGLIEAIDRFDPE 79 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +G F T+A+QRIRGA++D +R+ D VPR+ R+ AR + QA ++ GR E EVA Sbjct: 80 RGVKFETFAIQRIRGAIIDAVRTLDLVPRTARQRARAIEQAYREIFAATGRMPPEEEVAA 139 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 LG+ I +RQ L D + + + + ++E D Q PL + S+L R+ Sbjct: 140 HLGMTIDAFRQALQDAACA-ILPLQQSDRDGEGTLEDTLPDAQATEPLDAAVRSDLVHRL 198 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 A+E LPER++L++TLYY EEL L+EI VL + ESRVSQL S+A +LR L + Sbjct: 199 AAALERLPERDRLIVTLYYYEELTLREISEVLGITESRVSQLLSRARLQLRALLHE 254 >UniRef50_B2VA41 RNA polymerase sigma factor n=2 Tax=Hydrogenothermaceae RepID=B2VA41_SULSY Length = 281 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 100/233 (42%), Gaps = 15/233 (6%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 L + + V A V L DL+ AG +GL+ A +R+D + Sbjct: 35 AKQGDKEALKKLVEGNLRFVVSIAKNFMG---WGVPLTDLIAAGNLGLIEAAKRFDPDKN 91 Query: 65 TAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F +YAV IR A++ + + +P +V + +L++ELGR TE E+A Sbjct: 92 VKFISYAVWWIRQAIMQTIFQQTGAVRIPVKESLFIAKVKETYEKLKEELGREPTEEEIA 151 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD---SIELVTDDHQRENPLQQLLDSNL 178 +RL + + L S D E G+ ++ V E+ ++L++ + Sbjct: 152 KRLNTSVKKVKNALSIVR--LPISLDMPLGEGGEEDFTLLDVLSKKGTEDIEKELIEETI 209 Query: 179 RQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQ 227 + + ++ L EREK ++ + Y E L+E+G L + RV QL + Sbjct: 210 HKELESMLDVLDEREKEIIKMRYGLDGEEPKTLEEVGEKLGISRERVRQLEQR 262 >UniRef50_Q9ZSL6 Sigma-like factor n=2 Tax=Arabidopsis thaliana RepID=Q9ZSL6_ARATH Length = 419 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 13/235 (5%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + + + Y LV A Q + + L DL+Q G IGLL ER+D +G Sbjct: 175 RRKEAREKITRCYRRLVVSIATGYQGK---GLNLQDLIQEGSIGLLRGAERFDPDRGYKL 231 Query: 68 TTYAVQRIRGAMLDELRSRDW---VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TY I+ A+L + + +P S+ +VA+A L ++L R + E+AE L Sbjct: 232 STYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHL 291 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWREEHGD-SIELVTDDHQRENPLQQLLDSNLRQRVM 183 ++++ R L + S D ++G +++ + P + + +++ + Sbjct: 292 NLNVSAVR--LAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIE 349 Query: 184 EAIETLPEREKLVLTLYYQE----ELNLKEIGAVLEVGESRVSQLHSQAIKRLRT 234 + + +L RE VL LY+ ++ +EIG L++ RV Q++ A+K+LR Sbjct: 350 QLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRN 404 >UniRef50_Q5ZUL1 RNA polymerase sigma factor n=6 Tax=Legionella pneumophila RepID=Q5ZUL1_LEGPH Length = 262 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 101/236 (42%), Positives = 155/236 (65%), Gaps = 2/236 (0%) Query: 3 SLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDAL 62 + Y+ + +L + + LV+ A L RLP SV+LDDL+Q+G +GLL A YD+ Sbjct: 29 AAYSKVNQQTQEALVKTHATLVKRIAHHLLGRLPQSVQLDDLIQSGMLGLLEAARHYDSS 88 Query: 63 QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAE 122 +G +F TYA RIRG MLDE+R DWVPRSV RN+R ++ A+ LE +LGR A + E+AE Sbjct: 89 KGASFETYAGIRIRGHMLDEVRRNDWVPRSVYRNSRMISDAVRILEHKLGREAKDNEIAE 148 Query: 123 RLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRV 182 LG+ + DY ML D+ +S L+ +D+ + + + P + ++ S++ R+ Sbjct: 149 ELGVSLDDYHDMLQDSISSHLYGFDDLGVTDDVLFDH--EGNGSTEPHRNVMRSDMMNRL 206 Query: 183 MEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 + I++LP +E+LVL+LYY+++LNLKEIG +LEV ESR+SQ+ SQA R+R++L + Sbjct: 207 TQVIDSLPRKERLVLSLYYEQDLNLKEIGEILEVSESRISQILSQATHRIRSRLPE 262 >UniRef50_A9ALE2 RNA polymerase sigma factor n=19 Tax=Burkholderia RepID=A9ALE2_BURM1 Length = 525 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 12/224 (5%) Query: 10 VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTT 69 ++ + + LV A + R V+L DL+Q G IGL+ A+E+++ +G F+T Sbjct: 286 RDATRAMLEANLRLVLSIARKYLNR---GVDLSDLVQDGCIGLMRAIEKFEYRRGFKFST 342 Query: 70 YAVQRIRGAMLDELRS---RDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGI 126 YA IR A+ + VP V + V + + Q GR T E+A G+ Sbjct: 343 YATWWIRQAIARAVADRARTIRVPVHVGDQHQRVRRQALRFRQRTGRQPTPAELAAETGL 402 Query: 127 DIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 R +L ++ S D + + + +D +P +QL + +R+ V + Sbjct: 403 AEDKLRAIL--ALPAEPVSLDTPLPDADTGLVDLIEDETSASPFEQLAGTRMRECVRSLL 460 Query: 187 ETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHS 226 ++ E VL + E I + RV Q+ Sbjct: 461 RSVTPTEADVLRRRFGLGGTEPDTYDAIAKDAGMSRERVRQIEK 504 >UniRef50_D2QYQ7 RNA polymerase, sigma 28 subunit, FliA/WhiG n=7 Tax=Planctomycetaceae RepID=D2QYQ7_9PLAN Length = 261 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 145/230 (63%), Gaps = 7/230 (3%) Query: 13 KHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAV 72 ++ L + Y+PLV++ R+ RLP VELDDL+ AG GL++A++ +D +G F TY V Sbjct: 28 RNLLVEHYLPLVKYNGERIWARLPEGVELDDLISAGIFGLMDAIDAFDMTRGVKFETYCV 87 Query: 73 QRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYR 132 RIRGAMLDELR+ DWVPR VR A ++ +A LE LGR+ T E+A ++ + + + Sbjct: 88 PRIRGAMLDELRTMDWVPRLVRSKASKLGEATKTLEARLGRHPTTVELAAQMEMSVPEVE 147 Query: 133 QMLLDTNNSQLFSYDEWREEHGDSIE----LVTDDHQRENPLQQLLDSNLRQRVMEAIET 188 +M+ + + L S ++ E + + +D + E+P +++ ++L + V + Sbjct: 148 KMVSEASAVGLISLNKKWYETDSYKDVREIDILEDKKGEDPTRRIQKNDLMRLVTK---G 204 Query: 189 LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 L E+L++ LYY EEL +KEIGA L++ ESRVSQ+HS + RL+++LG+ Sbjct: 205 LNRNERLIIILYYYEELTMKEIGATLDLSESRVSQMHSSIVSRLQSQLGR 254 >UniRef50_P29248 RNA polymerase sigma factor for flagellar operon n=153 Tax=Gammaproteobacteria RepID=FLIA_PSEAE Length = 247 Score = 239 bits (612), Expect = 5e-62, Method: Composition-based stats. Identities = 118/234 (50%), Positives = 149/234 (63%), Gaps = 1/234 (0%) Query: 4 LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63 A+ + L QRY PLV+ A L RLPASV+++DL+QAG IGLL A ++YDA + Sbjct: 10 YSKAQAQNSQEQLIQRYAPLVKRIAYHLLGRLPASVQVEDLMQAGMIGLLEAAKKYDAGK 69 Query: 64 GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123 G +F TYA RIRGAMLDE+R DW PRSV RN R V AI +E GR+A + EVA Sbjct: 70 GASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVTDAIRAIEARTGRDAKDHEVAAE 129 Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183 L + + DY +L DT S+L+S+D+ ++ + T E P+ LLD + + Sbjct: 130 LQLSLEDYYGILSDTQGSRLYSFDDLLQDGEHGLPEDTSLSHNE-PIHGLLDERFQAALA 188 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 +AI LPERE+LVL LYY EELNLKEIG VL V ESRVSQLHSQ RLR +L Sbjct: 189 DAIAKLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRARLA 242 >UniRef50_Q47D27 RNA polymerase sigma factor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47D27_DECAR Length = 309 Score = 239 bits (611), Expect = 6e-62, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 13/245 (5%) Query: 2 NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61 + L + + + + LV + A R + L DL++ G +GL++A+E++D Sbjct: 61 SRLVREGDFSARQRMIEHNLRLVVNIAKHYLNR---GIPLLDLIEEGNLGLIHALEKFDP 117 Query: 62 LQGTAFTTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATET 118 +G F+TYA IR + + ++ +P + + V +A+ LE R++T Sbjct: 118 ERGFRFSTYATWWIRQNIERGIMNQSRTIRLPVHIVKEINVVLRAMRHLESADKRDSTVE 177 Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH-GDSIELVTDDHQRENPLQQLLDSN 177 +A + +AD R++L + N + S D E ++ V D +P L S Sbjct: 178 RIALLIDRPVADVRRIL--SLNEHIASLDAPLEIDPNHTMAEVIADDGESDPESLLQSSE 235 Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 + V + +E L ER++ V+ Y L I L + RV Q+ + + RLR Sbjct: 236 VGSLVDDWLEQLTERQRSVIERRYGLSGADLATLDVIACDLGLTRERVRQIQMEGLDRLR 295 Query: 234 TKLGK 238 + + Sbjct: 296 KIIKR 300 >UniRef50_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV14_SULAA Length = 282 Score = 239 bits (611), Expect = 6e-62, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 15/233 (6%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 L + + V + A V L DL+ AG +GL+ A +R+D + Sbjct: 36 AKKGDKEALKKLVEGNLRFVVNIAKNFMG---WGVPLTDLIAAGNLGLIEAAKRFDPDKN 92 Query: 65 TAFTTYAVQRIRGAMLDELRSRD---WVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F +YAV IR A++ + + +P +V A +L++ LGR TE E+A Sbjct: 93 VKFISYAVWWIRQAIMQTIFQQTGAVRIPIKESLFISKVKNAYEKLKESLGREPTEEEIA 152 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD---SIELVTDDHQRENPLQQLLDSNL 178 + L + + L Q S D E G+ ++ + E+ + L++S L Sbjct: 153 KELKTSVKKVKNALAIVR--QPISLDMPLGEGGEEDFTLLDILSKKGTEDVEKDLVESTL 210 Query: 179 RQRVMEAIETLPEREKLVLTLYYQ----EELNLKEIGAVLEVGESRVSQLHSQ 227 ++ + L ERE+ ++ L Y E L+E+G +L + RV QL + Sbjct: 211 KEEFERLLNVLDEREREIIKLRYGLEGLEPKTLEEVGEMLGISRERVRQLEQR 263 >UniRef50_C6JJT6 RNA polymerase sigma factor n=5 Tax=Fusobacterium RepID=C6JJT6_FUSVA Length = 275 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 105/241 (43%), Gaps = 13/241 (5%) Query: 5 YTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQG 64 A K+ L + LV + A + + DL+ G +GL+ A+E++D +G Sbjct: 34 AKAGDEESKNQLILSNLRLVVNIAKGYINK---GLSFIDLISEGNLGLIYAIEKFDITKG 90 Query: 65 TAFTTYAVQRIRGAMLDEL---RSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121 F+TYAV I+ ++ + +P +V + + ++ G E+A Sbjct: 91 FRFSTYAVWWIKQSISKAVIVKGREIRIPSYKYDLLNKVNRYVMSRLKDEGNYPPVEEIA 150 Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181 L ID+ + +++D + S +E + + +++ + R++ Sbjct: 151 AELNIDVDKIQDIIMDFQDPMSLSTQIG---DDIYLEDTLAQQEDFSMEEEIFNEMGRKQ 207 Query: 182 VMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLG 237 V + + L EREK +L L Y + L+EIG L + RV Q+ + +++LR+K Sbjct: 208 VRDMVNQLEEREKEILKLRYGLDGYEIHTLEEIGNTLNITRERVRQIEKKTLQKLRSKYT 267 Query: 238 K 238 K Sbjct: 268 K 268 >UniRef50_Q39477 RNA polymerase sigma factor (Fragment) n=1 Tax=Cyanidium caldarium RepID=Q39477_CYACA Length = 609 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 109/270 (40%), Gaps = 47/270 (17%) Query: 8 EGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAF 67 + SL + LV A + R + + DL+Q G IGL+ ER+D G F Sbjct: 329 RAQRARESLVAANLRLVVSVAKQFTNR---GLSMQDLIQEGSIGLIKGAERFDYRTGFRF 385 Query: 68 TTYAVQRIRGAMLDELRSR---DWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERL 124 +TYA+ IR AM + +P ++ + ++ +A +L LGR+ T+ E+A+ L Sbjct: 386 STYAMWWIRQAMQRAIADTSRPIRIPSTITDLSVQIYRARLELSSTLGRDPTDAELADFL 445 Query: 125 GIDIADYRQMLLDTNNSQLFSYDEWRE-------------EHGD---------------- 155 I + + + L TN S S D D Sbjct: 446 DISVQRLQDVKLYTNQSATVSLDAPVSRQVTNTCIKSKGTGDTDVFSSKADGKLSKNGYG 505 Query: 156 --------SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEE--- 204 ++ + +P + DS +R + A+ L E+ V+ + + + Sbjct: 506 SRHKLGDFTLGDTVQTDESVSPEHMMADSLMRDDIECALSLLNPYEREVIRMRFGLDDGR 565 Query: 205 -LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233 ++ E+ A V SR+ ++ ++A+++LR Sbjct: 566 MKSVDEVCAYYCVQTSRIRRIEARALRKLR 595 Score = 39.8 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%) Query: 91 RSVRRNAREV---AQAIGQLEQELGRNATETEVAERLGIDIADY-RQMLLDTNNSQLF 144 S+ R R++ QL E G+ TE A+ L + + R +L + Sbjct: 280 VSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQRARESL 337 >UniRef50_A0LI23 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LI23_SYNFM Length = 279 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 98/232 (42%), Positives = 143/232 (61%), Gaps = 5/232 (2%) Query: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68 G K + ++ LV+H ALRL RLP V +DDL+ AG IGL++AV++YD+ QG F Sbjct: 28 GGETKELVILKHSDLVKHMALRLFSRLPDHVSIDDLISAGVIGLIDAVDKYDSGQGIPFK 87 Query: 69 TYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDI 128 YA RIRGAMLDE+R+ DWVPRS+R+ + + LEQ+LGR ++ +VA L I I Sbjct: 88 FYAKIRIRGAMLDEIRAMDWVPRSLRQKGNVLERTFSALEQKLGRCPSDEQVAGELNIGI 147 Query: 129 ADYRQMLLDTNNSQLFS--YDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAI 186 DY ++L + +E E+G+S L E Q +++ + +AI Sbjct: 148 EDYHRLLDEIKGISFLPENINEALLENGESGSLA---SDSEELFQHAYRQEIQRHLADAI 204 Query: 187 ETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238 TL E+E+LVL+LYY +EL +KE+G L ESR+SQ+H++AI +LR++L K Sbjct: 205 RTLTEKEQLVLSLYYYDELTMKEVGTALGYTESRISQIHTKAIIKLRSRLAK 256 >UniRef50_Q2LT13 RNA polymerase sigma factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LT13_SYNAS Length = 261 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 148/236 (62%), Gaps = 3/236 (1%) Query: 7 AEGVMDKHSLWQRYVPLVRHEALRLQVRLPASV-ELDDLLQAGGIGLLNAVERYDALQGT 65 D+ +L +Y+P V+ R+ ++P + +DL+ G IGL++A+E+YD + Sbjct: 24 NADKKDREALILKYLPFVKAVVGRMASKIPIDAGDKEDLIHVGIIGLMSAIEKYDTRRNV 83 Query: 66 AFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLG 125 F TYA RIRGA+LDELR+RDWVPR+VR E+ +AI L++ L R + E++E LG Sbjct: 84 RFETYAGIRIRGAVLDELRARDWVPRAVRSRDNEITKAISSLQKILRRAPDDHEISEYLG 143 Query: 126 IDIADYRQMLLDTNNSQLFSYDEWREEHGD--SIELVTDDHQRENPLQQLLDSNLRQRVM 183 + I +Y ++L D+ L S ++ ++ D S V ++ + L + D R ++ Sbjct: 144 LSIEEYFKLLDDSRCISLISSEDLPGDYLDRYSCSDVIRAVEQGSALDLITDHEFRMQLK 203 Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239 +A+E LP++E+LVLTLYY EEL +KEIG VL++ ESRV QLHSQAI RLR + K+ Sbjct: 204 KAMELLPDKERLVLTLYYYEELTMKEIGKVLDLTESRVCQLHSQAIFRLRAAVKKI 259 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.206 0.694 Lambda K H 0.267 0.0633 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,157,779,937 Number of Sequences: 3077464 Number of extensions: 148748876 Number of successful extensions: 581496 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 6086 Number of HSP's successfully gapped in prelim test: 2694 Number of HSP's that attempted gapping in prelim test: 563704 Number of HSP's gapped (non-prelim): 12994 length of query: 239 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 114 effective length of database: 655,713,356 effective search space: 74751322584 effective search space used: 74751322584 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 93 (39.8 bits)