BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (809 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P37024 ATP-dependent RNA helicase hrpB n=204 Tax=Gammap... 1617 0.0 UniRef50_Q6LMK3 Hypothetical ATP-dependent helicase HrpB n=3 Tax... 792 0.0 UniRef50_B7VJZ7 Helicase n=18 Tax=Vibrionales RepID=B7VJZ7_VIBSL 743 0.0 UniRef50_A0KP00 ATP-dependent helicase HrpB n=39 Tax=cellular or... 706 0.0 UniRef50_A5VN69 ATP-dependent helicase HrpB n=36 Tax=Proteobacte... 640 0.0 UniRef50_A8H0E4 ATP-dependent helicase HrpB n=20 Tax=Shewanella ... 624 e-177 UniRef50_Q4K5J8 ATP-dependent helicase HrpB n=14 Tax=Gammaproteo... 617 e-175 UniRef50_C0Z909 Putative ATP-dependent helicase n=2 Tax=Bacillal... 617 e-175 UniRef50_C6D288 ATP-dependent helicase HrpB n=1 Tax=Paenibacillu... 611 e-173 UniRef50_C8R296 ATP-dependent helicase HrpB n=1 Tax=Desulfurivib... 609 e-172 UniRef50_Q1ZIP8 Hypothetical ATP-dependent helicase HrpB n=1 Tax... 607 e-172 UniRef50_A9DCL0 ATP-dependent helicase HrpB n=1 Tax=Shewanella b... 607 e-172 UniRef50_A1TWR1 ATP-dependent helicase HrpB n=3 Tax=Gammaproteob... 604 e-171 UniRef50_Q20WW0 ATP-dependent helicase HrpB n=23 Tax=Alphaproteo... 602 e-170 UniRef50_Q3IHM3 ATP-dependent helicase n=3 Tax=Alteromonadales R... 598 e-169 UniRef50_Q1JXM2 ATP-dependent helicase HrpB n=1 Tax=Desulfuromon... 594 e-168 UniRef50_A4XYS1 ATP-dependent helicase HrpB n=13 Tax=Gammaproteo... 593 e-167 UniRef50_B0TA29 ATP-dependent helicase hrpb n=3 Tax=Bacteria Rep... 589 e-166 UniRef50_Q11QG4 ATP-dependent helicase n=1 Tax=Cytophaga hutchin... 588 e-166 UniRef50_Q21KE4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 582 e-164 UniRef50_B5JVW3 ATP-dependent helicase HrpB n=1 Tax=gamma proteo... 581 e-164 UniRef50_Q15YM0 ATP-dependent helicase HrpB n=1 Tax=Pseudoaltero... 566 e-159 UniRef50_A8IJC9 ATP-dependent helicase n=43 Tax=cellular organis... 565 e-159 UniRef50_B3EB95 ATP-dependent helicase HrpB n=1 Tax=Geobacter lo... 564 e-159 UniRef50_A6Q8R2 ATP-dependent helicase HrpB n=1 Tax=Sulfurovum s... 563 e-158 UniRef50_C1AEB6 ATP-dependent helicase n=1 Tax=Gemmatimonas aura... 562 e-158 UniRef50_Q3A1P8 ATP-dependent helicase HrpB n=8 Tax=Desulfuromon... 561 e-158 UniRef50_C7LWJ1 ATP-dependent helicase HrpB n=1 Tax=Desulfomicro... 560 e-157 UniRef50_Q72BU1 ATP-dependent helicase HrpB n=3 Tax=Desulfovibri... 557 e-157 UniRef50_C5BNR7 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 549 e-154 UniRef50_C5S692 ATP-dependent helicase HrpB n=1 Tax=Allochromati... 549 e-154 UniRef50_Q0EYD3 ATP-dependent helicase HrpB n=2 Tax=Proteobacter... 545 e-153 UniRef50_Q47W70 ATP-dependent helicase HrpB n=1 Tax=Colwellia ps... 545 e-153 UniRef50_C0QI12 HrpB n=1 Tax=Desulfobacterium autotrophicum HRM2... 543 e-152 UniRef50_B8DNU5 ATP-dependent helicase HrpB n=2 Tax=Proteobacter... 540 e-152 UniRef50_A0L6K8 ATP-dependent helicase HrpB n=1 Tax=Magnetococcu... 537 e-151 UniRef50_Q0FF79 DEAD/DEAH box helicase n=1 Tax=Rhodobacterales b... 537 e-151 UniRef50_B9ZJ54 ATP-dependent helicase HrpB n=1 Tax=Thioalkalivi... 537 e-151 UniRef50_B6WQJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 533 e-149 UniRef50_A8LHX9 ATP-dependent RNA helicase n=30 Tax=Alphaproteob... 532 e-149 UniRef50_Q313C3 ATP-dependent helicase HrpB n=1 Tax=Desulfovibri... 530 e-149 UniRef50_B8J0D1 ATP-dependent helicase HrpB n=1 Tax=Desulfovibri... 524 e-147 UniRef50_A0YC48 ATP-dependent helicase HrpB n=1 Tax=marine gamma... 523 e-146 UniRef50_Q0C562 ATP-dependent helicase HrpB n=1 Tax=Hyphomonas n... 521 e-146 UniRef50_D1P961 ATP-dependent helicase HrpB n=1 Tax=Prevotella c... 520 e-145 UniRef50_Q3BYY2 ATP-dependent helicase HrpB n=20 Tax=Bacteria Re... 519 e-145 UniRef50_Q1GIW4 ATP-dependent helicase HrpB n=3 Tax=Rhodobactera... 519 e-145 UniRef50_Q31I73 DEAH-box ATP-dependent helicase HrpB n=1 Tax=Thi... 518 e-145 UniRef50_Q2RRT0 ATP-dependent helicase HrpB n=19 Tax=Bacteria Re... 517 e-145 UniRef50_A1SSH4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 513 e-143 UniRef50_UPI0000E0EA09 ATP-dependent helicase HrpB n=1 Tax=Rhodo... 510 e-143 UniRef50_D1N9R3 ATP-dependent helicase HrpB n=1 Tax=Victivallis ... 507 e-142 UniRef50_D2UGH8 Probable atp-dependent rna helicase protein n=1 ... 504 e-141 UniRef50_B4X2F5 ATP-dependent helicase HrpB n=1 Tax=Alcanivorax ... 496 e-138 UniRef50_Q6ALG3 Related to ATP-dependent helicase n=1 Tax=Desulf... 495 e-138 UniRef50_D0D680 ATP-dependent helicase HrpB n=1 Tax=Citreicella ... 494 e-138 UniRef50_Q0VPK1 HrpB protein n=1 Tax=Alcanivorax borkumensis SK2... 493 e-137 UniRef50_A5GWY8 HrpA-like helicase n=1 Tax=Synechococcus sp. RCC... 489 e-136 UniRef50_Q5QVR0 Helicase, ATP-dependent n=1 Tax=Idiomarina loihi... 487 e-136 UniRef50_A3Y8Y8 ATP-dependent helicase HrpB n=1 Tax=Marinomonas ... 471 e-131 UniRef50_UPI0001B58540 ATP-dependent helicase HrpB n=2 Tax=Actin... 470 e-130 UniRef50_C8WC01 ATP-dependent helicase HrpB n=3 Tax=Zymomonas mo... 465 e-129 UniRef50_Q0RIL0 HrpA-like helicase, ATP-dependent n=12 Tax=Bacte... 463 e-128 UniRef50_A4S6B1 Predicted protein n=2 Tax=Mamiellales RepID=A4S6... 461 e-128 UniRef50_B4S0B6 ATP-dependent helicase HrpB n=2 Tax=Alteromonas ... 442 e-122 UniRef50_A6W7E3 ATP-dependent helicase HrpB n=4 Tax=Actinomyceta... 442 e-122 UniRef50_C4DH66 ATP-dependent helicase HrpB n=5 Tax=Actinomyceta... 440 e-122 UniRef50_Q3AZY8 ATP-dependent helicase HrpB n=7 Tax=Chroococcale... 436 e-120 UniRef50_Q2G8M4 ATP-dependent helicase HrpB n=5 Tax=Sphingomonad... 434 e-120 UniRef50_A5G2H1 ATP-dependent helicase HrpB n=2 Tax=Alphaproteob... 430 e-118 UniRef50_C6WNJ1 ATP-dependent helicase HrpB n=1 Tax=Actinosynnem... 429 e-118 UniRef50_Q11S69 ATP-dependent helicase n=2 Tax=Sphingobacteriale... 429 e-118 UniRef50_A6W340 ATP-dependent helicase HrpB n=1 Tax=Marinomonas ... 424 e-117 UniRef50_D2QWI1 ATP-dependent helicase HrpB n=1 Tax=Pirellula st... 422 e-116 UniRef50_D1ADU7 ATP-dependent helicase HrpB n=6 Tax=Actinomyceta... 422 e-116 UniRef50_B5ZE33 ATP-dependent helicase HrpB n=4 Tax=Acetobactera... 419 e-115 UniRef50_B0SIC0 HrpA-like helicase n=2 Tax=Leptospira biflexa se... 417 e-115 UniRef50_C7JEP3 DNA helicase HrpB n=8 Tax=Acetobacter pasteurian... 412 e-113 UniRef50_A7BE71 Putative uncharacterized protein n=1 Tax=Actinom... 411 e-113 UniRef50_A3WLA9 Helicase, ATP-dependent n=1 Tax=Idiomarina balti... 409 e-112 UniRef50_A8HQ16 Predicted protein (Fragment) n=1 Tax=Chlamydomon... 408 e-112 UniRef50_A2C686 DEAD/DEAH box helicase:Helicase C-terminal domai... 404 e-111 UniRef50_Q1D7W0 ATP-dependent helicase HrpB n=3 Tax=Cystobacteri... 402 e-110 UniRef50_D2B686 ATP-dependent helicase HrpB n=1 Tax=Streptospora... 400 e-109 UniRef50_Q7UT94 ATP-dependent helicase n=1 Tax=Rhodopirellula ba... 398 e-109 UniRef50_Q1N1U8 ATP-dependent helicase HrpB n=1 Tax=Bermanella m... 396 e-108 UniRef50_B1ZU70 Helicase ATP-dependent domain protein n=5 Tax=Ve... 384 e-105 UniRef50_A9FJ06 ATP-dependent RNA helicase n=1 Tax=Sorangium cel... 380 e-103 UniRef50_D1Y978 ATP-dependent helicase HrpB n=3 Tax=Propionibact... 378 e-103 UniRef50_C2CSI0 ATP-dependent helicase n=2 Tax=Corynebacterium R... 369 e-100 UniRef50_B7A9M0 ATP-dependent helicase HrpB n=1 Tax=Thermus aqua... 368 e-100 UniRef50_C5SLZ8 ATP-dependent helicase HrpB (Fragment) n=1 Tax=A... 362 3e-98 UniRef50_Q6MIP3 Helicase n=1 Tax=Bdellovibrio bacteriovorus RepI... 359 2e-97 UniRef50_A6DMD8 ATP-dependent helicase HrpB n=1 Tax=Lentisphaera... 352 3e-95 UniRef50_C0WHI1 ATP-dependent helicase n=4 Tax=Corynebacterium R... 351 6e-95 UniRef50_Q01ZA3 ATP-dependent helicase HrpB n=2 Tax=Acidobacteri... 349 2e-94 UniRef50_C0W153 ATP-dependent helicase HrpB n=1 Tax=Actinomyces ... 349 3e-94 UniRef50_B3PC35 Putative HrpA-like helicase n=1 Tax=Cellvibrio j... 341 8e-92 UniRef50_C6MXH7 Helicase n=2 Tax=Legionella RepID=C6MXH7_9GAMM 340 1e-91 UniRef50_A6GDN5 ATP-dependent helicase HrpB n=1 Tax=Plesiocystis... 334 8e-90 UniRef50_UPI0001746914 ATP-dependent helicase HrpB n=1 Tax=Verru... 333 1e-89 UniRef50_UPI000185C193 ATP-dependent helicase HrpB n=1 Tax=Coryn... 327 2e-87 UniRef50_C1E5F1 Predicted protein n=13 Tax=cellular organisms Re... 323 2e-86 UniRef50_A4BBY9 ATP-dependent helicase HrpB n=1 Tax=Reinekea bla... 322 3e-86 UniRef50_C8NRG4 ATP-dependent helicase n=10 Tax=Corynebacterium ... 313 2e-83 UniRef50_B2GHK7 ATP-dependent helicase n=7 Tax=Actinomycetales R... 307 9e-82 UniRef50_Q00XA1 ATP-dependent helicase HrpB (ISS) n=2 Tax=cellul... 301 6e-80 UniRef50_C8RUP0 Probable ATP-dependent rna helicase protein n=2 ... 283 2e-74 UniRef50_D0LYT6 ATP-dependent helicase HrpB n=1 Tax=Haliangium o... 275 4e-72 UniRef50_C0VRT2 ATP-dependent helicase n=2 Tax=Corynebacterium g... 275 5e-72 UniRef50_C5C946 ATP-dependent helicase HrpB n=2 Tax=Micrococcus ... 270 1e-70 UniRef50_B2UM09 Helicase ATP-dependent domain protein n=1 Tax=Ak... 268 5e-70 UniRef50_Q10752 Pre-mRNA-splicing factor ATP-dependent RNA helic... 265 5e-69 UniRef50_A4U4B3 HrpA-like helicases n=1 Tax=Magnetospirillum gry... 262 4e-68 UniRef50_A4BTJ3 ATP-dependent helicase HrpA n=1 Tax=Nitrococcus ... 261 6e-68 UniRef50_Q1YSZ9 ATP-dependent helicase HrpA n=2 Tax=unclassified... 261 1e-67 UniRef50_C0NP73 ATP-dependent RNA helicase DHX8 n=10 Tax=Dikarya... 259 2e-67 UniRef50_Q47MH0 ATP-dependent helicase HrpA n=13 Tax=Bacteria Re... 259 3e-67 UniRef50_B9XI99 Helicase-associated domain protein n=1 Tax=bacte... 259 3e-67 UniRef50_Q0S1M3 ATP-dependent helicase hrpA n=5 Tax=Corynebacter... 259 3e-67 UniRef50_B5GG28 ATP-dependent helicase n=3 Tax=Streptomyces RepI... 258 7e-67 UniRef50_O01598 Putative uncharacterized protein T05E8.3 n=1 Tax... 258 9e-67 UniRef50_A0Z814 Helicase, ATP-dependent n=3 Tax=unclassified Gam... 258 9e-67 UniRef50_B1VE65 Putative ATP-dependent helicase n=1 Tax=Coryneba... 258 1e-66 UniRef50_D0WKL4 ATP-dependent helicase HrpA n=1 Tax=Actinomyces ... 257 1e-66 UniRef50_Q55CD3 DEAD/DEAH box helicase n=2 Tax=Eukaryota RepID=Q... 257 1e-66 UniRef50_D1N0X8 ATP-dependent helicase HrpA n=1 Tax=Victivallis ... 257 1e-66 UniRef50_C8N990 ATP-dependent helicase HrpA n=1 Tax=Cardiobacter... 257 1e-66 UniRef50_B7VPK9 ATP-dependent helicase n=201 Tax=Bacteria RepID=... 256 3e-66 UniRef50_D2R0M6 ATP-dependent helicase HrpA n=1 Tax=Pirellula st... 256 4e-66 UniRef50_A8XFV1 Putative uncharacterized protein n=2 Tax=Caenorh... 256 4e-66 UniRef50_C4QEZ9 ATP-dependent RNA Helicase, putative n=21 Tax=Eu... 255 4e-66 UniRef50_UPI00016C44CB ATP-dependent helicase HrpB n=1 Tax=Gemma... 255 6e-66 UniRef50_Q0A864 ATP-dependent helicase HrpA n=9 Tax=Gammaproteob... 254 7e-66 UniRef50_Q54MH3 Putative pre-mRNA-splicing factor ATP-dependent ... 254 7e-66 UniRef50_C0SAG2 Pre-mRNA-splicing factor ATP-dependent RNA helic... 254 1e-65 UniRef50_B9ZMZ4 ATP-dependent helicase HrpA n=1 Tax=Thioalkalivi... 254 1e-65 UniRef50_P45018 ATP-dependent RNA helicase hrpA homolog n=53 Tax... 254 1e-65 UniRef50_O45244 Probable pre-mRNA-splicing factor ATP-dependent ... 253 2e-65 UniRef50_O60231 Putative pre-mRNA-splicing factor ATP-dependent ... 253 3e-65 UniRef50_P36009 Probable ATP-dependent RNA helicase DHR2 n=16 Ta... 253 3e-65 UniRef50_Q14562 ATP-dependent RNA helicase DHX8 n=78 Tax=Eukaryo... 252 4e-65 UniRef50_C8X757 ATP-dependent helicase HrpA n=1 Tax=Nakamurella ... 252 4e-65 UniRef50_B2ANS3 Predicted CDS Pa_6_9920 n=3 Tax=Saccharomyceta R... 252 4e-65 UniRef50_P43329 ATP-dependent RNA helicase hrpA n=101 Tax=Bacter... 252 5e-65 UniRef50_D0KXD2 ATP-dependent helicase HrpA n=1 Tax=Halothiobaci... 251 6e-65 UniRef50_Q21LQ8 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 250 1e-64 UniRef50_C4LJ32 Putative ATP-dependent helicase n=1 Tax=Coryneba... 250 1e-64 UniRef50_Q3SHC5 ATP-dependent helicase HrpA n=3 Tax=Betaproteoba... 250 1e-64 UniRef50_C1ZJL9 ATP-dependent helicase HrpA n=1 Tax=Planctomyces... 250 1e-64 UniRef50_A7ASE9 RNA helicase, putative n=1 Tax=Babesia bovis Rep... 250 2e-64 UniRef50_A0L8U8 ATP-dependent helicase HrpA n=1 Tax=Magnetococcu... 250 2e-64 UniRef50_A3FQE8 Putative uncharacterized protein n=2 Tax=Cryptos... 250 2e-64 UniRef50_Q2LSZ0 ATP-dependent helicase n=1 Tax=Syntrophus acidit... 250 2e-64 UniRef50_B8FCF5 ATP-dependent helicase HrpA n=1 Tax=Desulfatibac... 249 2e-64 UniRef50_Q1C7D5 ATP-dependent helicase HrpA n=4 Tax=Bacteria Rep... 249 2e-64 UniRef50_C4JEY7 ATP-dependent RNA helicase DHX8 n=25 Tax=cellula... 249 2e-64 UniRef50_Q31H28 ATP-dependent helicase HrpA n=1 Tax=Thiomicrospi... 249 3e-64 UniRef50_B0RGP0 ATP-dependent helicase n=3 Tax=Actinobacteria (c... 249 3e-64 UniRef50_Q5ANN5 Likely spliceosomal DEAD box ATPase n=3 Tax=Euka... 249 3e-64 UniRef50_C5DCP1 KLTH0B04664p n=2 Tax=Saccharomycetales RepID=C5D... 249 3e-64 UniRef50_P53131 Pre-mRNA-splicing factor ATP-dependent RNA helic... 249 3e-64 UniRef50_B6AI28 Pre-mRNA-processing protein 8, putative n=1 Tax=... 249 3e-64 UniRef50_Q09530 Probable pre-mRNA-splicing factor ATP-dependent ... 249 4e-64 UniRef50_A9WQ04 ATP-dependent helicase n=1 Tax=Renibacterium sal... 249 4e-64 UniRef50_UPI0001AF48FA ATP-dependent helicase HrpB, putative n=1... 248 5e-64 UniRef50_C0VVM1 HrpA family ATP-dependent helicase n=2 Tax=Coryn... 248 8e-64 UniRef50_A3YEF6 ATP-dependent helicase HrpA n=1 Tax=Marinomonas ... 248 8e-64 UniRef50_Q3JBJ6 ATP-dependent helicase HrpA n=3 Tax=Chromatiacea... 248 1e-63 UniRef50_B8KHJ8 ATP-dependent helicase HrpA n=1 Tax=gamma proteo... 248 1e-63 UniRef50_A4VNQ0 ATP-dependent helicase HrpA n=32 Tax=Proteobacte... 247 1e-63 UniRef50_C9ZMN0 ATP-dependent RNA helicase, putative n=4 Tax=Try... 247 2e-63 UniRef50_A6VYA9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 247 2e-63 UniRef50_Q7PT33 AGAP007212-PA n=4 Tax=cellular organisms RepID=Q... 247 2e-63 UniRef50_B5JXZ9 ATP-dependent helicase HrpA n=1 Tax=gamma proteo... 247 2e-63 UniRef50_A9GK92 ATP-dependent helicase HrpA n=2 Tax=Myxococcales... 247 2e-63 UniRef50_A1U107 ATP-dependent helicase HrpA n=4 Tax=Gammaproteob... 246 2e-63 UniRef50_Q4N5J8 RNA helicase, putative n=1 Tax=Theileria parva R... 246 2e-63 UniRef50_Q6AL39 Related to ATP-dependent helicase HrpA n=1 Tax=D... 246 2e-63 UniRef50_C1DAE5 HrpA n=2 Tax=Betaproteobacteria RepID=C1DAE5_LARHH 246 2e-63 UniRef50_Q6A8Y5 ATP-dependent helicase HrpA n=3 Tax=Propionibact... 246 2e-63 UniRef50_B0JZ95 Dhx16 protein n=5 Tax=Fungi/Metazoa group RepID=... 246 3e-63 UniRef50_C7ME24 ATP-dependent helicase HrpA n=1 Tax=Brachybacter... 246 3e-63 UniRef50_Q0F3B4 ATP-dependent helicase HrpA n=1 Tax=Mariprofundu... 245 4e-63 UniRef50_D0W5V2 ATP-dependent helicase HrpA n=3 Tax=Neisseria Re... 245 4e-63 UniRef50_A5EVC9 ATP-dependent helicase HrpA n=1 Tax=Dichelobacte... 244 1e-62 UniRef50_C1RH11 ATP-dependent helicase HrpA (Fragment) n=1 Tax=C... 244 1e-62 UniRef50_Q4N829 RNA helicase, putative n=2 Tax=Theileria RepID=Q... 244 1e-62 UniRef50_C0QAN7 HrpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 243 2e-62 UniRef50_C8RTL0 ATP-dependent helicase n=4 Tax=cellular organism... 243 2e-62 UniRef50_A8IHD9 DEAH-box nuclear pre-mRNA splicing factor n=2 Ta... 243 2e-62 UniRef50_B9WE17 Pre-mRNA-splicing factor ATP-dependent RNA helic... 242 4e-62 UniRef50_A2D7A5 Helicase, putative n=1 Tax=Trichomonas vaginalis... 242 4e-62 UniRef50_Q6P404 DEAH (Asp-Glu-Ala-His) box polypeptide 38 n=9 Ta... 242 5e-62 UniRef50_B9Z2A4 ATP-dependent helicase HrpA n=1 Tax=Lutiella nit... 241 6e-62 UniRef50_A4S4Y0 Predicted protein n=3 Tax=Mamiellales RepID=A4S4... 241 7e-62 UniRef50_Q482P9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 241 8e-62 UniRef50_A7AWE8 RNA helicase, putative n=2 Tax=Piroplasmida RepI... 241 9e-62 UniRef50_B2GLW1 ATP-dependent RNA helicase HrpA n=7 Tax=Bacteria... 241 9e-62 UniRef50_B6K0W8 Pre-mRNA-splicing factor ATP-dependent RNA helic... 241 1e-61 UniRef50_C2KSU4 HrpA family ATP-dependent helicase n=3 Tax=Mobil... 241 1e-61 UniRef50_C4Y9K0 Putative uncharacterized protein n=1 Tax=Clavisp... 241 1e-61 UniRef50_B5JKC1 ATP-dependent helicase HrpA n=5 Tax=Bacteria Rep... 241 1e-61 UniRef50_P24384 Pre-mRNA-splicing factor ATP-dependent RNA helic... 240 1e-61 UniRef50_C5CA12 ATP-dependent helicase HrpA n=5 Tax=Micrococcace... 240 1e-61 UniRef50_Q92620 Pre-mRNA-splicing factor ATP-dependent RNA helic... 240 2e-61 UniRef50_Q759Y3 ADR140Cp n=2 Tax=Saccharomycetaceae RepID=Q759Y3... 240 2e-61 UniRef50_Q5KGT3 Pre-mRNA splicing factor, putative n=7 Tax=Dikar... 240 2e-61 UniRef50_B7GWG2 ATP-dependent helicase HrpA n=17 Tax=Acinetobact... 239 2e-61 UniRef50_C7QZ06 ATP-dependent helicase HrpA n=1 Tax=Jonesia deni... 239 2e-61 UniRef50_D2S4R8 ATP-dependent helicase HrpA n=1 Tax=Geodermatoph... 239 2e-61 UniRef50_D0MZQ2 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 239 2e-61 UniRef50_A8ZWI2 ATP-dependent helicase HrpA n=1 Tax=Desulfococcu... 239 2e-61 UniRef50_Q65SL6 HrpA protein n=9 Tax=Pasteurellaceae RepID=Q65SL... 239 3e-61 UniRef50_UPI000050FFFD ATP-dependent helicase n=1 Tax=Brevibacte... 239 3e-61 UniRef50_UPI0001AF14C1 ATP-binding RNA helicase n=1 Tax=Streptom... 239 3e-61 UniRef50_P20095 Pre-mRNA-splicing factor ATP-dependent RNA helic... 239 3e-61 UniRef50_D0LBQ9 ATP-dependent helicase HrpA n=2 Tax=Corynebacter... 239 4e-61 UniRef50_A2F2U1 Putative uncharacterized protein n=2 Tax=Trichom... 238 5e-61 UniRef50_B2SSX2 ATP-dependent helicase HrpA n=13 Tax=Xanthomonad... 238 6e-61 UniRef50_Q3LVV7 Putative pre-mRNA splicing factor n=1 Tax=Bigelo... 238 6e-61 UniRef50_Q1NTJ0 ATP-dependent helicase HrpA n=2 Tax=delta proteo... 238 6e-61 UniRef50_A6C1G8 ATP-dependent helicase HrpA n=1 Tax=Planctomyces... 238 8e-61 UniRef50_B6BTD8 ATP-dependent helicase HrpA n=2 Tax=Betaproteoba... 238 9e-61 UniRef50_Q47AH6 ATP-dependent helicase HrpA n=7 Tax=Betaproteoba... 238 9e-61 UniRef50_A9C368 ATP-dependent helicase HrpA n=13 Tax=cellular or... 237 1e-60 UniRef50_Q54NJ4 Putative pre-mRNA-splicing factor ATP-dependent ... 237 1e-60 UniRef50_A4X5M6 ATP-dependent helicase HrpA n=6 Tax=Actinomyceta... 237 1e-60 UniRef50_A7H8J8 ATP-dependent helicase HrpB n=5 Tax=Bacteria Rep... 237 1e-60 UniRef50_Q8SQW7 Possible PRE-mRNA SPLICING FACTOR (ATP-DEPENDENT... 237 1e-60 UniRef50_C7RBD8 ATP-dependent helicase HrpA n=1 Tax=Kangiella ko... 237 2e-60 UniRef50_B2UQA6 ATP-dependent helicase HrpA n=1 Tax=Akkermansia ... 237 2e-60 UniRef50_D1H6K3 Whole genome shotgun sequence of line PN40024, s... 236 2e-60 UniRef50_UPI00006CF98F hypothetical protein TTHERM_00419730 n=1 ... 236 3e-60 UniRef50_Q6FTI2 Strain CBS138 chromosome G complete sequence n=1... 236 4e-60 UniRef50_C8PMN0 ATP-dependent RNA helicase HrpA n=1 Tax=Treponem... 235 5e-60 UniRef50_B4JQ72 GH13648 n=1 Tax=Drosophila grimshawi RepID=B4JQ7... 235 5e-60 UniRef50_Q9P774 Pre-mRNA-splicing factor ATP-dependent RNA helic... 235 5e-60 UniRef50_D0NLP1 Pre-mRNA-splicing factor ATP-dependent RNA helic... 235 6e-60 UniRef50_D1ZEJ8 Whole genome shotgun sequence assembly, scaffold... 234 7e-60 UniRef50_C5X1W0 Putative uncharacterized protein Sb01g037170 n=2... 234 7e-60 UniRef50_Q1QXI6 ATP-dependent helicase HrpA n=17 Tax=Gammaproteo... 234 7e-60 UniRef50_D2JWV9 Putative pre-mRNA splicing factor n=1 Tax=Filoba... 234 7e-60 UniRef50_Q22ZC0 Putative uncharacterized protein n=1 Tax=Tetrahy... 234 8e-60 UniRef50_D1BIN2 ATP-dependent helicase HrpA n=1 Tax=Sanguibacter... 234 9e-60 UniRef50_Q2Y975 ATP-dependent helicase HrpA n=2 Tax=Proteobacter... 234 1e-59 UniRef50_UPI0001698F0D HrpA-like helicase n=1 Tax=Endoriftia per... 234 1e-59 UniRef50_UPI000186CCEB ATP-dependent RNA helicase, putative n=1 ... 234 1e-59 UniRef50_A8NMZ1 ATP-dependent helicase , putative n=1 Tax=Brugia... 234 1e-59 UniRef50_A2DQS5 Helicase, putative n=1 Tax=Trichomonas vaginalis... 233 2e-59 >UniRef50_P37024 ATP-dependent RNA helicase hrpB n=204 Tax=Gammaproteobacteria RepID=HRPB_ECOLI Length = 809 Score = 1617 bits (4187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 809/809 (100%), Positives = 809/809 (100%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA Sbjct: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV Sbjct: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS Sbjct: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV Sbjct: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP Sbjct: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL Sbjct: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL Sbjct: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG Sbjct: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG 540 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG Sbjct: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG 540 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL Sbjct: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 Query: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA Sbjct: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 Query: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH Sbjct: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 Query: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ Sbjct: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 Query: 781 KEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 KEMKGRYPKHVWPDDPANTAPTRRTKKYS Sbjct: 781 KEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 >UniRef50_Q6LMK3 Hypothetical ATP-dependent helicase HrpB n=3 Tax=Gammaproteobacteria RepID=Q6LMK3_PHOPR Length = 836 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/836 (50%), Positives = 563/836 (67%), Gaps = 29/836 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-------GKIIL 53 MS LP+ VLP+LLT L +PQ++L AP GAGKST LPL+LLA G+II+ Sbjct: 1 MSQLPIDTVLPDLLTTLAISPQLILKAPPGAGKSTRLPLELLASRSKAIRGGARFGRIIM 60 Query: 54 LEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPE 113 LEPRRLAARN+A L++ L E+ G+TVG R+R ++ V T+LE+VTEGV+TRM+Q+DPE Sbjct: 61 LEPRRLAARNIANYLSKQLGERVGETVGLRVRGESKVSKATQLEIVTEGVMTRMLQQDPE 120 Query: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPV 173 L G+ L+I DEFHERS+ AD ALAL L+VQ+ LRDDLKLL+MSATLD D L+ +LP+A Sbjct: 121 LKGIDLLIFDEFHERSIHADTALALALEVQEALRDDLKLLVMSATLDADALKGLLPDAGY 180 Query: 174 VISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 + S GR FPVE RY + H + ++ T ++L ESGS+L+FLPG GEI+R+ L Sbjct: 181 IESYGRCFPVEYRYKSVSDHYQLLESCCRETLQLLDAESGSILIFLPGAGEIKRLAGMLT 240 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R+ +VL+ PL+G LS Q++AI+PAP+G RKVVLATNIAETSLTIEGIRLVVDC + Sbjct: 241 ERVADNVLISPLFGQLSNEQQQQAIMPAPKGQRKVVLATNIAETSLTIEGIRLVVDCGLK 300 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R+A +DP+TG++RL R++Q+S QRAGRAGRLEPGI + L ++EQ R +PEIL Sbjct: 301 RIALWDPKTGISRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEEQLSRQPMTPQPEIL 360 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 ++DL+ L MEL QWGC+D +++ W D PP LL ++RLLQ LG ++ +L+ G++ Sbjct: 361 RADLTSLAMELAQWGCNDASELRWSDMPPQPALLQSRRLLQQLGIMDQRFQLTDVGKQTQ 420 Query: 413 ALGNDPRLAAMLVSAKNDD---------EAATAAKIAAILEEPPRMGNS-----DLGVAF 458 +G DPR A ML++A+ D TAA + A+LE+PPR NS L + Sbjct: 421 TMGTDPRHAVMLIAAQQFDANHTSGSTLAMTTAALLVALLEDPPRGMNSPDLHFQLNLLE 480 Query: 459 SRNQP---AWQQRSQQLLKRLN---VRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 S P +Q R++Q L +LN + IAP++A + DRIA RG DGRYQL Sbjct: 481 SGKLPRARQYQLRAKQHLAKLNQSASLSLSISAEWIAPIMAAGYPDRIALSRGTDGRYQL 540 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 +NG G ML A++ ++ L+ +++ + D+R+ + D + L + P L + + Sbjct: 541 SNGQGVMLPADEPMANEAMLVVADVVK-TRQGDSRVFSCVATDSNRLQELLPHLFSEREW 599 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 ++WDD +G L A + L G+L ++ + P + +A+LN I KGLSVL W + Sbjct: 600 LDWDDKKGRLTAEKHLCCGKLILQRSVMDTPDPAKASEALLNAIMRKGLSVLPWNEKTSN 659 Query: 633 LRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 L R CA +WLP+ P +DDE+LLA E WLLP MTG+ +L+ + LD+ AL L Sbjct: 660 LLTRARCAHEWLPDLGLPEMDDETLLADAEQWLLPFMTGITTLKSIARLDLKAALEARLG 719 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 W + LD LP H+ VPTGSR IRY + PALAVRMQEMFGE T+P IA GRVPLVL Sbjct: 720 WEQAKTLDVVLPTHFQVPTGSRYPIRYQVGHKPALAVRMQEMFGEKTSPQIANGRVPLVL 779 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ELLSPAQRPLQIT+DL+ FW+G+YR+VQKEMKGRYPKHVWPDDPAN PTRRTKKY Sbjct: 780 ELLSPAQRPLQITQDLAAFWQGSYRDVQKEMKGRYPKHVWPDDPANHLPTRRTKKY 835 >UniRef50_B7VJZ7 Helicase n=18 Tax=Vibrionales RepID=B7VJZ7_VIBSL Length = 832 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/817 (47%), Positives = 548/817 (67%), Gaps = 16/817 (1%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ AV+P+LL + Q++L A GAGKST+ PLQL+ + GKII+LEPRRLAARN Sbjct: 15 LPIEAVMPDLLAGVQTHTQLILKAAPGAGKSTFFPLQLVKTNAVQGKIIMLEPRRLAARN 74 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 +A LA L EK G+++G+R+R ++ TRLE+VTEG++TRMIQ DPEL+GV +VI D Sbjct: 75 IATYLARQLGEKVGESIGFRVRGESKTSSATRLEIVTEGIMTRMIQTDPELTGVDMVIFD 134 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERS+ AD ALA L++Q LRDDLK+++MSATLD LQ +LP+A V S+GR+FPV Sbjct: 135 EFHERSIHADTALAFSLEIQDALRDDLKVVVMSATLDQHALQSLLPDAKYVESQGRTFPV 194 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 + RY PL +++ +A ++ +ESGSLL FLPGV I++V+ QL + SD+ +C Sbjct: 195 DFRYQPLGSNEYLAPKMANVIRSLMEKESGSLLAFLPGVSAIKQVESQLGQLV-SDIDVC 253 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 PLYG LS Q+++I P+ +G RKVVLATNIAETSLTIEGIRLVVD ERVA+FD +TG Sbjct: 254 PLYGQLSFEQQQRSIAPSVKGRRKVVLATNIAETSLTIEGIRLVVDSGLERVAKFDLKTG 313 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 +T+L ++SQ+S QRAGRAGR+E G+ + L ++ Q + A EPEIL SDLS L+ E Sbjct: 314 ITKLEQVKISQSSAEQRAGRAGRIEEGLCVRLYSETQLMQQPAVPEPEILHSDLSSLVSE 373 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAA 422 L QWG + ++ WLD PP + K+LLQ L L+ + ++ G++ LG +PR+A+ Sbjct: 374 LTQWGAASAEELQWLDVPPKASTEQGKQLLQNLELLDANGQFTSMGKQAQRLGIEPRIAS 433 Query: 423 MLVSAKNDDEAATAAKI--AAILEEPPRMGNSDLGVAFSR-------NQPAWQQRSQQLL 473 ML+ A+ + A I AA+LEEP R +D+ + R QR++ L Sbjct: 434 MLIKAQQNSPALLNVAIVAAALLEEPER-NVTDIQHSLHRLKQRKHSKNSVVMQRAKSLA 492 Query: 474 KRLN--VRGGEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHE 530 +LN + + D SL+ +L AF DRIA+ R G ++LANG GA + +D L+ +E Sbjct: 493 SKLNHHLDLSQVDESLLPLVLCFAFPDRIAQSRSATGCAFRLANGHGAEVRDDDRLANNE 552 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 +++ L++ +A ++I LA +DI +L L + D +WD+ +G L A R+ + Sbjct: 553 YIVVIDLMR-TAGRASQIFLATPIDIVQLEASFSGLFTREDYADWDEKRGRLVAEERVLL 611 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 G+L + + L +P D++ QA+LN I GL L+WT+ A+QL R+ CA W+PE+DWP Sbjct: 612 GKLIISTKALPEPDSDQISQALLNYIARCGLERLHWTSSAKQLVERVRCAQLWMPEHDWP 671 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 A+DD SL+ L+ WL P++ G+ S +GL ++ I QAL L W + Q +D LP +Y +P Sbjct: 672 AMDDASLIEHLDEWLSPYLNGIKSAKGLSNVSIEQALSAYLGWPLNQEIDQWLPTNYLMP 731 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 TGS+ +IRY + P ++VRMQE+FGE +P IAQGR +VLELLSPAQRPLQIT+DL+ Sbjct: 732 TGSKKSIRYQYKSEPMISVRMQEVFGEQDSPLIAQGRKKVVLELLSPAQRPLQITQDLAG 791 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FW GAY+EVQKEMKGRYPKH WPDDPAN T +TK+ Sbjct: 792 FWAGAYKEVQKEMKGRYPKHPWPDDPANHVATTKTKR 828 >UniRef50_A0KP00 ATP-dependent helicase HrpB n=39 Tax=cellular organisms RepID=A0KP00_AERHH Length = 1056 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/816 (49%), Positives = 530/816 (64%), Gaps = 14/816 (1%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 +SSLP+ +VLP L A+D V+L AP GAGKST LPL+L+ + G+II+LEPRRLA Sbjct: 242 LSSLPIVSVLPALFAAIDNHTSVILQAPPGAGKSTLLPLELVRQNRLPGRIIMLEPRRLA 301 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARN+A LA L EK G+ +G R+R ++ TRLE+VTEGVLTRM+Q+DPEL+GV LV Sbjct: 302 ARNIAGFLARQLGEKVGERIGLRVRGESRTSAATRLEIVTEGVLTRMLQQDPELTGVSLV 361 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL AD ALA ++ QQGLRDDLKLL+MSATLD L+ +LPEAPVV SEGR Sbjct: 362 IFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALEILLPEAPVVRSEGRG 421 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FP++ Y P Q + V E L +GSLL+FLPG GEI+R+ + L R+ +V Sbjct: 422 FPIDYHYRPANRQQWLEPQVGAVVLEALAAHAGSLLVFLPGQGEIERLAQWLEGRLPDEV 481 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L PLYG L + Q+ AI PAP G RK+VL TN+AETSLTIEGI +VVD ER A FD Sbjct: 482 TLAPLYGRLDMAAQQAAIEPAPAGRRKLVLTTNVAETSLTIEGISVVVDSGLERRASFDI 541 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 ++G+TRL T+ +++AS TQRAGRAGRL PG+ L + E ER A QS P+IL +L+GL Sbjct: 542 KSGVTRLETRPIAKASATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGL 601 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--EGE-RLSAQGQKMAALGND 417 L++ QWG + ++ LD PP + +A+RLL LGA+ EGE +L+ G+ MAA G Sbjct: 602 LLDAAQWG-AKVEELPLLDMPPAAAVASAQRLLVSLGAMKPEGEQQLTPAGRAMAAFGTH 660 Query: 418 PRLAAMLVSAKNDDE------AATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQ 471 PRLA ML+ A+ + A AA + A+LEE R G+ L V F R Q A +Q + + Sbjct: 661 PRLARMLLRARELEAEGLTGIVADAAFLVALLEEDLR-GSERLSVLFHRRQGALRQSAAR 719 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEW 531 +RL R A + L A A+ DRI + R RYQL+ G+ L Sbjct: 720 WFERLGTRPASAQGQWLGLLCALAWPDRIGKLR-SGSRYQLSGGVSCDLVEGHPCQGQGA 778 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIG 591 LIA + G +RI +A +++DELV++ P+LV + +WD+ + ++A R+ +G Sbjct: 779 LIA--IEMGQNERGSRIFIAEPIELDELVRQLPELVSERQWFDWDEREERVRAERQQVLG 836 Query: 592 QLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 +L + +PL S+++ + +L GIR KGL VL W +E L RL CA WLP+ WPA Sbjct: 837 ELVLSQRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDDASEGLLARLRCARDWLPDEGWPA 896 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 +D+ SLLA LE WLLP ++G+ L LK LD+ LR L W + +RLD LP H+T PT Sbjct: 897 MDEASLLADLEQWLLPAVSGMTRLEQLKKLDMSDILRQSLPWPLPKRLDEALPGHFTAPT 956 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 GSR+ IRY P + VR+QEMFG+A P +A GRV LV+ELLSPAQRPLQIT DL+ F Sbjct: 957 GSRVRIRYQLGQAPVIPVRIQEMFGQAATPCVADGRVALVVELLSPAQRPLQITADLAAF 1016 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 W G+Y V+KEMKGRYP+H WPD+P PTR TKK Sbjct: 1017 WAGSYELVKKEMKGRYPRHYWPDNPLEAMPTRVTKK 1052 >UniRef50_A5VN69 ATP-dependent helicase HrpB n=36 Tax=Proteobacteria RepID=A5VN69_BRUO2 Length = 832 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/819 (46%), Positives = 523/819 (63%), Gaps = 21/819 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN----GKIILLEP 56 + LPV +LP+L AL +L AP GAGK+T +PL +L G++ G I+LLEP Sbjct: 18 LPDLPVTRILPQLDEALAHHASAVLVAPPGAGKTTLVPLHML---GVDWRGEGVIVLLEP 74 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RRLAAR A+R+A+LL E+PG+TVGYRMR ++ V TR+ VVTEGV RMI DP+L+G Sbjct: 75 RRLAARAAARRMAQLLGEEPGETVGYRMRLESKVSAKTRILVVTEGVFARMILDDPDLNG 134 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS 176 V V+ DEFHERSL AD LAL LDVQ LRDDLK+L+MSATLD R+ +L +APV+ S Sbjct: 135 VAAVLFDEFHERSLDADFGLALALDVQAALRDDLKILVMSATLDGARVASLLGDAPVIES 194 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 EGR++PV+ RY A +R +DA+A A + L E+GS+L FLPG GEI+R L R+ Sbjct: 195 EGRAYPVDIRYRDRKADERIEDAMARAIRDALVDETGSILAFLPGQGEIERTARLLEERL 254 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 ++VLL PLYGA+ + Q AI PAP G RK+VLAT+IAETS+TI+G+R+V+D R+ Sbjct: 255 PANVLLAPLYGAMEGSAQDAAIRPAPAGSRKIVLATSIAETSITIDGVRVVIDSGLARLP 314 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 +++P TGLTRL T R S+AS QRAGRAGR EPGI++ L + Q A S PEIL++D Sbjct: 315 KYEPATGLTRLETVRTSRASADQRAGRAGRTEPGIAIRLWHQGQTASLPAFSPPEILEAD 374 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALG 415 LSGL+++ WG +DPA +++LD+P L AK LL LGAL E RL+ G+ M +L Sbjct: 375 LSGLVLDAAAWGVTDPATLNFLDKPLKPALAEAKALLHRLGALDEAGRLTPDGEAMRSLA 434 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVA-----FSRNQPAWQQRSQ 470 RLA M+ A EA AA++A +L E +G D+ + F ++ QR++ Sbjct: 435 LPARLAHMVTEAAKRGEAQAAAELAVLLTE-RGLGGKDIDLETRLSRFRGDRSDRAQRAR 493 Query: 471 QLLKRL--NVRG-GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALS 527 L KRL N+R G S + LL A+ DRIA+ RG G++ LANG G +D +LS Sbjct: 494 GLAKRLAANLRNQGAPAGSTVGRLLIDAYPDRIAKARGTTGQFLLANGRGGEVDPAVSLS 553 Query: 528 RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRR 587 R WL+ + G A ARIL A E+ ++ + +D + L+A Sbjct: 554 RAPWLVV-ADMSGKAG-RARILSAAETSEAEIRAALGGRIESGKQIVYDPEKNALRAREA 611 Query: 588 LQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 ++IG + + + LA PS + ++ +R+ GLS+L W+ EAE LR RL + L + Sbjct: 612 VRIGAIALSEKLLAAPSGAGADEGVIAAVREHGLSILPWSKEAEILRRRLGWLYRGLGD- 670 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHY 707 WP+++D++LL LE WLLP +TG L + + L L+ + +Q+ +D P H+ Sbjct: 671 PWPSMEDDTLLERLEDWLLPFLTGEAQLDRIPGRVLKNGLMSLVPFDLQRSVDQLAPTHF 730 Query: 708 TVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRD 767 PTGS + IRY + P +AVR+QE+FG +P+IA G+VPL+LELLSPA RP+QITRD Sbjct: 731 EAPTGSHVPIRYDAEE-PVIAVRVQELFGLGAHPSIANGKVPLLLELLSPAHRPIQITRD 789 Query: 768 LSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 L FWKG++ +V+ +M+GRYPKHVWP+DPAN PTRR K Sbjct: 790 LPGFWKGSWADVRSDMRGRYPKHVWPEDPANAMPTRRAK 828 >UniRef50_A8H0E4 ATP-dependent helicase HrpB n=20 Tax=Shewanella RepID=A8H0E4_SHEPA Length = 869 Score = 624 bits (1609), Expect = e-177, Method: Compositional matrix adjust. Identities = 366/832 (43%), Positives = 502/832 (60%), Gaps = 29/832 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 ++SLP+ A+L L A C QV+L APTGAGKST LPL +L P I+GKI++LEPRR+A Sbjct: 36 VTSLPIHALLQPLRDAFSCCQQVILEAPTGAGKSTALPLDMLNWPEISGKILMLEPRRVA 95 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARNVAQ +A+ + G VGYR++ V NTRLE+VTEGVLTRMIQ+DPEL+GV +V Sbjct: 96 ARNVAQFIAKQRGCELGTEVGYRVKGDTRVSANTRLEIVTEGVLTRMIQQDPELTGVDMV 155 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DE HER L DL LAL L++Q R+DLK+L MSATL L +++P+A + SEGRS Sbjct: 156 IFDEIHERHLTTDLGLALALEIQASFREDLKILAMSATLSGLPLAELMPDAKQLKSEGRS 215 Query: 181 FPVERRYLPLPAHQRFDDAVA-VATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 FPVE Y +P + + +A V A + GSLL FLPG GEI ++ L+SR+ S+ Sbjct: 216 FPVEHAYSGVPNQSHWIEHMAKVIVASLQEHSQGSLLAFLPGQGEINKLHGILSSRLDSN 275 Query: 240 V-LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 V ++CPLYG+LS Q AI PA G+RKVVLATN+AE+SLTI+GI V+D +R ARF Sbjct: 276 VYVICPLYGSLSARAQDLAIAPAANGIRKVVLATNVAESSLTIDGITQVIDSGYKRQARF 335 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 +P+TG+TRL +R+SQAS QRAGRAGRL G L ++E+ R EPEI+ SDL Sbjct: 336 NPKTGVTRLSLKRISQASAAQRAGRAGRLMAGFCTRLWSQEEHGRLLKADEPEIVHSDLL 395 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGND 417 ++++ WG ++ L QP N + RLLQ + + E ++ G++ LG + Sbjct: 396 SMVLDAAYWGVKSLNELPMLTQPSAANEDVSWRLLQTMAMVNESRSITQHGRQAHKLGCN 455 Query: 418 PRLAAMLVSAKNDDE-------AATAAKIAAILEEPPRMGNSDLGVAFSRN--QPAWQQR 468 PRLA ML+ AK E A +A LE R S G SR + + Sbjct: 456 PRLAHMLLMAKQSAEDNQDLNLGLLACILAGTLEARSR---SRQGADISRYLLEALQGES 512 Query: 469 SQQLLKRLNVRG-------------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANG 515 S+Q+ + G A S IA LLA A+ DRIA+ RG G YQLANG Sbjct: 513 SKQIRNWVKTLGLSALGQLDLAQVARNASSDDIAMLLALAYPDRIAKARGVTG-YQLANG 571 Query: 516 MGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEW 575 G L DALS WL+ L + A++ LA ++ LV + W Sbjct: 572 SGVELANEDALSGSPWLVVADLQETEGRSQAKVYLAAQLNPQLFDSELASLVLTQEYGGW 631 Query: 576 DDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRL 635 D+ +G A ++ +IG++ + P+ + + QA+L IR KGL+++N+ +QL+ Sbjct: 632 DEVKGRFFAEKQQKIGEILLTKTPIHNVDKRLIKQAILEQIRLKGLALMNFNEACQQLQQ 691 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGM 695 R+ A ++ PE+ WPA+D ++LL L++WL P++ V SL L+ LD Y L LL W + Sbjct: 692 RVALARQYCPEHGWPALDSDTLLNELDSWLAPYLDEVRSLAQLQQLDCYTLLLNLLPWEL 751 Query: 696 QQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755 QQ+L+ LP + + TGS + I Y L+VR+QE G +P +AQG++ + +ELL Sbjct: 752 QQQLEGLLPRKWPMATGSSVKIEYDATGRALLSVRLQEALGMQQSPRLAQGKLVVTMELL 811 Query: 756 SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 SPA RPL +T DL FW+G Y V+KEMKGRYP+H+WPDDPANT PT+ TKK Sbjct: 812 SPAHRPLALTADLESFWQGPYEHVKKEMKGRYPRHLWPDDPANTQPTKFTKK 863 >UniRef50_Q4K5J8 ATP-dependent helicase HrpB n=14 Tax=Gammaproteobacteria RepID=Q4K5J8_PSEF5 Length = 839 Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust. Identities = 389/840 (46%), Positives = 523/840 (62%), Gaps = 38/840 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M+SLP+ VLP L TAL + +L AP GAGK+T +PL LL + G+ I++LEPRRL Sbjct: 1 MNSLPIDEVLPALRTALATRHEAVLEAPPGAGKTTRVPLALLDQDWLAGQTILMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+RLA L EK G+TVGYR+R + VGP TR+EVVTEG+LTR +Q DP L GVGL Sbjct: 61 AARAAAERLASELGEKVGETVGYRIRLDSKVGPRTRIEVVTEGILTRRLQDDPALEGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISE 177 +I DEFHERSL ADLALAL L ++ RD+ LK+L+MSATL+ +RL +L +AP++ SE Sbjct: 121 LIFDEFHERSLDADLALALSLSGRELFRDEQPLKILLMSATLEGERLSTLLGDAPILRSE 180 Query: 178 GRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 GR +PV +R+ P + + V E L ESGSLL+FLPG EI+RV +QLA + Sbjct: 181 GRMYPVTQRWGRPFQPGEFIEPRVVQTVLEALNDESGSLLVFLPGQAEIRRVHQQLAEAL 240 Query: 237 G--SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 G S++LLCPL+G L L QR AI PAP G RKVVLATNIAETSLTI G+R+VVD R Sbjct: 241 GERSEILLCPLHGELDLAAQRAAIDPAPSGKRKVVLATNIAETSLTINGVRVVVDAGLAR 300 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 V RFDP +G+TRL TQR+S+AS TQRAGRAGRLEPG+ L + +Q E+ AA + EILQ Sbjct: 301 VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSADQQEQLAAYASAEILQ 360 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 +DL+GL ++L +WG + P Q+ WLD PP A+ LL LGAL + L+ GQ MA Sbjct: 361 ADLAGLALQLARWGVT-PNQLVWLDAPPSAAYAQAQDLLVRLGALNDDGSLTRHGQAMAE 419 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAF---------SRNQ 462 L PR+A +L+ ++ A A +AA+L E R +DL +R Sbjct: 420 LPAHPRIAHLLLRGQSLGLAPMACNVAALLGERDILRGAGADLHSRLVLLGGEERAARGA 479 Query: 463 PAWQQRSQQLLKRLNVRG---GEADSSLIAP--------LLAGAFADRIARRRGQDG-RY 510 QR++QL + RG G+ ++++ P LLA A+ DR+A++R G Y Sbjct: 480 QGGVQRARQLAR--QYRGYLRGQPEAAVADPEHPRWLGALLALAYPDRVAQQRRPGGAEY 537 Query: 511 QLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 +LANG A+ D+L + WL+ L + RI LA D + V+Q Sbjct: 538 RLANGRAALFSETDSLMKQPWLVIADLGSRQGQREERIYLAADFDPVLFDSVLAEQVRQV 597 Query: 571 DTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEA 630 D ++WD+ +G L+A R+ ++G+L + +PL+ E QA++N +R KGL +L WT E Sbjct: 598 DQLDWDEREGVLRAERQRKVGELVLSREPLSGLDESARTQALVNLVRRKGLELLPWTPEL 657 Query: 631 EQLRLRLLCAAKWLPE----YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQA 686 Q + R+ + E WP V D +LL LE WL P++ V L +L++ Sbjct: 658 RQWQARVALLRQLDLEATGTSQWPDVSDGALLKGLEQWLQPYLGKVSRLSHFANLELAGI 717 Query: 687 LRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQG 746 + LL W + QRLD P H TVP+GS I + Y E +PP LAVR+QE+FG A P IA G Sbjct: 718 IHNLLPWPLPQRLDELAPHHLTVPSGSSIRLDYSE-HPPILAVRLQELFGLAQTPRIAGG 776 Query: 747 RVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 R + L LLSPA+RP+Q+T+DL++FW+ Y EV+K++KGRYPKH WPDDP T R K Sbjct: 777 RQVVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLIAEATARVK 836 >UniRef50_C0Z909 Putative ATP-dependent helicase n=2 Tax=Bacillales RepID=C0Z909_BREBN Length = 834 Score = 617 bits (1591), Expect = e-175, Method: Compositional matrix adjust. Identities = 367/839 (43%), Positives = 510/839 (60%), Gaps = 41/839 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 M++LP+ VLPEL+ L +L A GAGK+T +PL L + N +I++L PRRL Sbjct: 1 MNALPINEVLPELVNTLREETNAVLVAAPGAGKTTRVPLALREEAWLHNRRIVMLVPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A +A LL E+ G TVGYR++ ++ VGP TR+EV+TEG+LTRM+Q DPELS VGL Sbjct: 61 AARQAAAYMAALLGEEVGQTVGYRVKRESRVGPGTRIEVMTEGILTRMLQDDPELSDVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHER+L ADL LAL L Q R+DL++L+MSATLD + + +L AP+V S+GR Sbjct: 121 VIFDEFHERNLHADLGLALSLQAQSLFREDLRILVMSATLDAEPVSALLGNAPIVSSKGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-SRIGS 238 FPVE R+L P R ++A+ + LRQE G +L+FLPG EI RVQE L S +G+ Sbjct: 181 MFPVETRFLTSPMQGRLEEAIVQMIFQALRQEEGDMLVFLPGAKEIHRVQELLEQSGVGT 240 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 ++ + PLYG LS +Q KAI P G RK+VLAT IAETSLT+EG+R+V+D +R+ RF Sbjct: 241 NIRIAPLYGNLSQEEQDKAIQPGKTGERKIVLATTIAETSLTVEGVRIVIDSGLKRIPRF 300 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 PRTG+TRL T +VS+AS QR GRAGRL PG+ L +++ Q PEI+++DL+ Sbjct: 301 SPRTGMTRLETAKVSRASADQRRGRAGRLAPGVCFRLWTEQEDRMLIPQQAPEIMEADLA 360 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGND 417 L +EL WG ++ WL+ PP + A+ LL LGAL E ++++A G+ +A + Sbjct: 361 VLALELALWGVGSSDELDWLNPPPKPAMAQAQELLLQLGALDERKQITAHGRALAGMAVH 420 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPP---------------------RMGN----- 451 PRL M+ A E A ++A +LEE R+GN Sbjct: 421 PRLGHMIQKANELGEGELACELAVLLEERDIVRGRQASVDADMRTRVELLRRVGNKQSGG 480 Query: 452 SDLGVAFSRNQPAWQQRSQQLLKRL----NVRGGEADSSLIAPLLAGAFADRIARRRGQD 507 ++L + Q W++ + KR+ G + LLA A+ DRIA+RR D Sbjct: 481 TELPIDVGACQRLWKEAAH--FKRVWGNNQSAGTSTRTEATGRLLAFAYPDRIAQRRA-D 537 Query: 508 GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLV 567 GRY L NG GA L +++A L A D+RILLA V+ EL++ C + Sbjct: 538 GRYLLRNGRGAAFSVQQPLVASPYIVAAELDDQGA--DSRILLAASVEESELLKDCAMQI 595 Query: 568 QQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWT 627 + V W+ + G +++ ++ ++G + + P A+ S DE+ A L+GI+ +GL +L W Sbjct: 596 TERMNVWWEHSAGAVRSRKQKRLGAILLADMP-AESSPDEVLTAFLDGIKGEGLEILPWN 654 Query: 628 AEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQAL 687 +A Q R RLL + E DWP V+DESLLA+LE WL PH+ G L+SL + L Sbjct: 655 RQARQYRERLLFMHRL--EEDWPNVEDESLLASLEEWLAPHVYGFKRKEDLQSLSVTTLL 712 Query: 688 RGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGR 747 +L W +++LD P H VP+GS+I + Y P L++R+QE+FG +P I +GR Sbjct: 713 ESMLSWEQRRQLDEHAPTHVIVPSGSKIPVDYSNPAAPVLSIRLQELFGWQDSPRIGRGR 772 Query: 748 VPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 VPL L LLSPA RP+Q+TRDL+ FW AY EV+K++KGRYPKH WPDDP PT RT+ Sbjct: 773 VPLTLHLLSPAHRPVQVTRDLASFWAHAYFEVKKDLKGRYPKHYWPDDPLAAIPTNRTR 831 >UniRef50_C6D288 ATP-dependent helicase HrpB n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D288_PAESJ Length = 830 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 369/836 (44%), Positives = 503/836 (60%), Gaps = 39/836 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ AVLPELL AL +L A GAGK+T +PL LL ++G KI++LEPRRL Sbjct: 1 MKQLPIDAVLPELLQALRVGTNAVLVAEPGAGKTTRVPLALLQETWLDGRKIVMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+ A+ +A L E+ G+TVGYR+R + V TR+EVVTEGVLTRM+Q D L VG Sbjct: 61 AARSAAKYMAASLGEQVGETVGYRVRLDSKVSAKTRIEVVTEGVLTRMLQEDQALERVGA 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 V+ DEFHER L DL LAL L Q LR+DL+LLIMSATLD + + ++L AP++ S GR Sbjct: 121 VLFDEFHERHLHGDLGLALTLQSQSLLREDLRLLIMSATLDAEPVAELLGGAPIIQSSGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-SRIGS 238 ++PVE Y R + A E +R+ G +L+FLPGVGEI+R L S + S Sbjct: 181 AYPVETIYRSTRVEGRIESQAASTIVEAIRENEGDVLVFLPGVGEIRRTAGHLMQSGLAS 240 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 V + L+G L L Q A+ P G RKVVLAT+IAE+SLT+EGIR+VVDC RV +F Sbjct: 241 SVRIAELHGNLPLEAQDAAVAPCKPGERKVVLATSIAESSLTVEGIRIVVDCGLMRVPKF 300 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 PRTG+TRL T VSQAS QR GRAGRL PG+ L +++ ++PE+L++DL+ Sbjct: 301 SPRTGMTRLETVSVSQASADQRRGRAGRLAPGVCYRLWTEQEHPYLPQHNKPELLEADLA 360 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-----EGERLSAQGQKMAA 413 L +EL WG ++P ++ WLD PP AA R L L E R++++G +MA Sbjct: 361 PLALELSAWGTAEPGELMWLDAPPQ----AAYRQALELLKLLQALDEDGRITSRGTRMAK 416 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP---PRMGNSDLGV-------------- 456 LG PRL ML+ A+ + A ++A +L E P N D+ + Sbjct: 417 LGLHPRLGFMLLKAEELNLLPEACELAGLLSERDLLPHERNVDVALRLEALYGAGGRMEA 476 Query: 457 ---AFSRNQPAWQQRSQQLLKRLNVRGGEAD---SSLIAPLLAGAFADRIARRRGQDGRY 510 A R + +Q Q + R G + +S L+A A+ DRIA+RR DGRY Sbjct: 477 DRGAVQRIKAQAKQWRQMVTNNSIERKGNWNWQGTSYAGLLIALAYPDRIAQRRA-DGRY 535 Query: 511 QLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 LANG GA L LSR +L A L A ++RI LA +D+D L Q + Q Sbjct: 536 LLANGRGAALPELQPLSRSAFLAAAEL--DDAGSESRIRLAAELDLDMLEQAAGEQFQVE 593 Query: 571 DTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEA 630 ++VEWD ++A RR+++G + +K P+ +PS +++ A+ +GI GL +L+ A Sbjct: 594 ESVEWDSGAQAVRARRRVRLGSIILKETPIQQPSPEQIAIALADGIASAGLGLLSMPKAA 653 Query: 631 EQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGL 690 QL+ R+ A+ WP V + +LLA + WLLPH+ G+ + L+ L++ Q L GL Sbjct: 654 RQLQARMQLMARH--NSGWPDVSEAALLATVHDWLLPHLYGMKNKSDLQRLNMVQILEGL 711 Query: 691 LDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPL 750 + WG +Q LD ++P H TVP+GSRI I Y + + P +AVR+QE+FG P +A GR+PL Sbjct: 712 MSWGQRQELDEQVPTHMTVPSGSRIPIDYSDPDAPFIAVRLQELFGLQETPRLAGGRLPL 771 Query: 751 VLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 L LLSP+QRP+Q+TRDL FW AY EV+K++KGRYPKH WPDDP PT R K Sbjct: 772 TLHLLSPSQRPVQVTRDLRSFWNEAYFEVKKDLKGRYPKHYWPDDPYAAQPTNRVK 827 >UniRef50_C8R296 ATP-dependent helicase HrpB n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R296_9DELT Length = 860 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 370/860 (43%), Positives = 496/860 (57%), Gaps = 60/860 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 S+LPV V+P+L L V+L+AP G+GK+T +P LL P + G KI+LL+PRRLA Sbjct: 3 STLPVHHVIPQLRRELARQAAVILTAPPGSGKTTLVPPALLDEPWLAGQKILLLQPRRLA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A +A+ NE G ++GYR+R ++ V TRLEV+TEG LTR +Q DPEL+G+GLV Sbjct: 63 ARLAATFMAQSRNETVGQSIGYRVRFESRVSAATRLEVLTEGTLTRQLQSDPELAGIGLV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL+ADLALAL DVQQGLR DLK+L+MSATLD++ L +L +APV+ +EG S Sbjct: 123 IFDEFHERSLEADLALALCRDVQQGLRPDLKILLMSATLDSEPLSALLDQAPVIGAEGES 182 Query: 181 FPVERRYL-----PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 FPV +L P + A A R+ G +L FLPG GEI+ + L+ Sbjct: 183 FPVSIEHLATAAGSFPYPREIAAQTAAAIRRAWREHPGDILAFLPGAGEIRLCHQLLSDN 242 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + PLYG L L Q A+ P P G R+++LAT+IAETSLTIEGI VVD +R Sbjct: 243 PPAATTIYPLYGDLPLAAQAAAVQPDPGGRRRIILATSIAETSLTIEGIHTVVDSGWQRR 302 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 RFDP +GL+RL T+R+SQA+ TQR GRAGRL PG L L + + PEIL + Sbjct: 303 PRFDPNSGLSRLTTRRISQAAATQRTGRAGRLGPGHCLRLWHPGEEQGLLPFEPPEILNA 362 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 DL+ LL+EL WG +PA+++WLD PP A+ LL LGA++ + R++ G+ + L Sbjct: 363 DLAPLLLELACWGVGNPAELTWLDPPPPGPCAQARELLLALGAVDQQGRVTPLGRLINEL 422 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPA---WQQRS-- 469 PRL ML+ A A +AA+L E + D A W+Q S Sbjct: 423 PVHPRLGLMLLKAAEAGAGEIACDLAALLSERDLLKGQDKPADLDERLEALRRWRQASAR 482 Query: 470 ------------------------------------QQLLKRLNVRGGEADSSLIAPLLA 493 Q++++ RG DS LLA Sbjct: 483 QTAAPDERRRPRQTLASGQEIDHAACRRVDRTASQLQRIIRHQESRGPTLDS---GELLA 539 Query: 494 GAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLAL 552 A+ DRIARRR G G+Y+L+ G GA L D L+ E+L L G + RI LA Sbjct: 540 LAYPDRIARRRPGMRGKYKLSGGRGATLPTGDRLADQEYLAVAELDAGRR--EGRIFLAG 597 Query: 553 LVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAM 612 ++ L + P+ +Q + + WD G +K + QLT++V PLA P + + + + Sbjct: 598 ALNPAALPRLFPEQLQNREELYWDREAGAVKGQSVVCFKQLTLEVAPLADPDPEAVRRVL 657 Query: 613 LNGIRD------KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLL 666 L I++ GLS+L W A +L+ RL+C +W PE +WP VDD+ L LE WL Sbjct: 658 LQAIKESGETGKNGLSLLPWNDRARELQARLICIGQWQPEGNWPRVDDQYLSQHLEQWLG 717 Query: 667 PHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPA 726 P + G+ + L+ LD+ L LD+ Q+ LD E+P H VP+GSR + Y D PP Sbjct: 718 PWLDGIKTAEQLRKLDLAAILAAQLDYQQQRYLDREVPTHLVVPSGSRRKLAYQPDRPPV 777 Query: 727 LAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGR 786 LAVR+QEMFG P IAQGRVP++L LLSPA RP+QIT DL FW Y +V+KE++GR Sbjct: 778 LAVRLQEMFGLEDTPMIAQGRVPVLLHLLSPAGRPVQITTDLRGFWDSGYHQVKKELQGR 837 Query: 787 YPKHVWPDDPANTAPTRRTK 806 YPKH WPDDP APT R K Sbjct: 838 YPKHHWPDDPRQAAPTARAK 857 >UniRef50_Q1ZIP8 Hypothetical ATP-dependent helicase HrpB n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZIP8_9GAMM Length = 826 Score = 607 bits (1566), Expect = e-172, Method: Compositional matrix adjust. Identities = 368/828 (44%), Positives = 504/828 (60%), Gaps = 28/828 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MSSLP+ +VL E+ ++L APQV+L AP GAGKST+LP +L + GKII+LEPRRLA Sbjct: 1 MSSLPIDSVLSEIKSSLSAAPQVILQAPPGAGKSTFLPFMMLKNKWFTGKIIMLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 +N+A +A L +EK G+ VGYRMR ++ V NT+LE+VTEGVL++MIQ+D ELSGV L+ Sbjct: 61 TKNIAYYIASLFSEKVGERVGYRMRGESHVSKNTQLEIVTEGVLSKMIQQDAELSGVDLL 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHER+LQ DLALAL LD+Q GLRDDLK+LIMSATLDN LQ+ LP A V S+GR Sbjct: 121 IFDEFHERNLQGDLALALALDLQAGLRDDLKILIMSATLDNSHLQKKLPNALCVSSQGRG 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +P+ + ++ +++ G +L+F+ G+ EI++ QL + V Sbjct: 181 YPITMYHYGFNTSANLMVSLIGLIKRAYKEQKGDILVFVAGIKEIKQCTTQLNVFFENAV 240 Query: 241 ---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 L+ PLYGALSL Q++A+ A G RK+V+ATNIAETSLTI GI +VVD QER A Sbjct: 241 EIPLIAPLYGALSLQVQQQAMQIAKNGQRKIVIATNIAETSLTIAGITVVVDSGQERSAI 300 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + ++G+T+L TQ +SQAS TQRAGRAGR++ G L + E AQ I +SDL Sbjct: 301 YQAKSGVTKLQTQMISQASATQRAGRAGRVQAGYCYRLWSAEVL--LPAQKTLPIQRSDL 358 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGN 416 + LL+E+L WG SD Q+ ++DQP NL A+ LL GAL+ +L+A G+ M +G Sbjct: 359 TSLLLEILYWGVSDAEQLPFIDQPNRSNLAQARTLLTTFGALDASNQLTAYGRAMIDMGT 418 Query: 417 DPRLAAMLVSAKNDDEAATAAKI--------AAILEEPPRMGNSDLGVAFSRNQPAW--Q 466 +PR A +L+ AK EA I A + P + + + QP++ + Sbjct: 419 EPRYAHLLLQAKRLHEAHYCEGILELGCLLVAQLESNEPSVDDISEAIL----QPSYLVK 474 Query: 467 QRSQQLLKRLNVRGGEADSSLIAP--LLAGAFADRIARRRGQDGRYQLANGMGAMLDAND 524 QR + L KRL +R +SL A LLA AF DRIA R G Y L+NG+GA L A+ Sbjct: 475 QRQKALFKRLKLRATHTPASLHACGLLLAFAFPDRIALARDNAGCYLLSNGIGAQLSAHS 534 Query: 525 ALSRHEWL-IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583 +L + L +A L L GSA ++RI A +++ +L Q + + W + L Sbjct: 535 SLINQKMLVVADLGLLGSAR-NSRIFSACSINLCDLENNISAYFSQKNEIYWQLSNKRLI 593 Query: 584 AWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA--- 640 A + IG+L + + L S + A+L GI+ GLS L W+A+ EQL RL A Sbjct: 594 AEKCTYIGKLLIHKKALRDLSAQQKSDALLCGIKKAGLSALTWSAQNEQLLCRLQYAHAQ 653 Query: 641 -AKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRL 699 AK+ + E+LL L+ WL P+++ + L LD+ AL L+W + Sbjct: 654 YAKYGSHNAFVDFSKETLLNTLDEWLGPYLSALSKPDQLARLDLQGALLARLNWATLAQF 713 Query: 700 DSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQ 759 ++ P H V TGS I+I Y E P L+VRMQE+FG+ +P I GR+ L L LLSPA+ Sbjct: 714 KTDFPTHMRVVTGSNISIEYRETQNPLLSVRMQELFGQKDSPCIFSGRITLQLALLSPAR 773 Query: 760 RPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 R LQ+T+DL+ FW GAY +V+KEM+GRYPKH WPDDP PT+RTKK Sbjct: 774 RALQLTQDLASFWAGAYVDVKKEMRGRYPKHYWPDDPQLAIPTKRTKK 821 >UniRef50_A9DCL0 ATP-dependent helicase HrpB n=1 Tax=Shewanella benthica KT99 RepID=A9DCL0_9GAMM Length = 876 Score = 607 bits (1564), Expect = e-172, Method: Compositional matrix adjust. Identities = 357/855 (41%), Positives = 498/855 (58%), Gaps = 49/855 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 ++ LP+ +L L A QV+L APTGAGKST LPL +L + GKI++LEPRR+A Sbjct: 15 LNQLPIHQLLLPLREAFRANNQVILEAPTGAGKSTALPLAMLDWSELKGKILMLEPRRVA 74 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA +A + G VGYR+R ++ G +TRLE+VTEG+L RMIQ+DPELSG+ L+ Sbjct: 75 ARSVAHYIASQRGTQIGAEVGYRVRGESRCGTSTRLEIVTEGILARMIQQDPELSGIALI 134 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DE HER L DL LAL L++Q R+DLK+L MSATL L ++P+A + SEGRS Sbjct: 135 IFDEIHERHLTTDLGLALALEIQGSFREDLKILAMSATLAGLPLSTLMPDACSLQSEGRS 194 Query: 181 FPVERRYLPLP--------------AHQRFDDAVAVATAEMLRQE--------------- 211 FPVE Y L + Q + + + ++L + Sbjct: 195 FPVELGYRSLAESKGRNQGANPYQNSTQIWLEHMGKCIVDLLNGDDKHLASIDADVASDI 254 Query: 212 --SGSLLLFLPGVGEIQRVQEQLASRIGSDVL-LCPLYGALSLNDQRKAILPAPQGMRKV 268 SGSLL FLPG GEI R+ + L+ R+ ++ LCPLYG+L Q KAI PA G RK+ Sbjct: 255 DSSGSLLAFLPGQGEIMRLHDYLSKRLDLNLFSLCPLYGSLPAKAQDKAIAPATDGKRKI 314 Query: 269 VLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLE 328 VL+TN+AE+SLTI+GI +VVD +R A F+P+TG+TRL +R+SQAS QRAGRAGRL Sbjct: 315 VLSTNVAESSLTIDGITMVVDSGYKRHASFNPKTGVTRLALKRISQASAAQRAGRAGRLS 374 Query: 329 PGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLA 388 G L L ++E+ R EPEIL SDL + ++ WG + L QP N Sbjct: 375 AGYCLRLWSQEEQGRLIKADEPEILHSDLVPMSLDAAYWGVKALNDLPLLTQPSKANETV 434 Query: 389 AKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKN------DDEAATAAKIAA 441 A +LL +L ++ +R L+ G + LG PRLA ML+ AK DD A + A Sbjct: 435 AWQLLALLELVDAQRKLTRHGSQAYQLGCHPRLAHMLLKAKTLSQTEGDDHLVGLACLLA 494 Query: 442 ILEEPPRMGNSDLGVAFSRNQPAWQQRSQQL---LKRLNVR------GGEADSSLIAPLL 492 + E +G + ++ + + +Q+ +K+L V S IA LL Sbjct: 495 GILESRSLGRHGVDISNYLRESIQGEAGKQVRTWMKKLKVNIDLSRLVSSVGSGDIALLL 554 Query: 493 AGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLAL 552 A AF DRIA+ RG G YQLANG G L +D L+R +WL+ + R+ LA Sbjct: 555 ALAFPDRIAKSRGVSG-YQLANGTGVTLAEHDPLARADWLVVADFQESEGRTSGRVYLAA 613 Query: 553 LVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAM 612 +D D +R LV+ D WD+A+G A R +IGQ+ + +P+ +++ A+ Sbjct: 614 EIDEDLFNKRLSFLVKSQDYCGWDEAKGRFFAECRQRIGQIVLSKTASNQPAPEQVKAAI 673 Query: 613 LNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGV 672 IR KGL +L++ + QL+ R+ A++ + WP + ++ LL LE WL P++ V Sbjct: 674 FEQIRSKGLELLDFNHKTLQLQSRVKLASELDTDTGWPDIGEQHLLDTLEDWLGPYINDV 733 Query: 673 HSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQ 732 SL L++LD Y L L +W +QRLD P H+ + TG+R AI Y + L+VR+Q Sbjct: 734 RSLSQLRALDCYTQLLNLFEWDKRQRLDKLFPCHWPMATGTRAAITYDDAGRAKLSVRLQ 793 Query: 733 EMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 E G A +P +A G++ + +ELLSPA+RPL +T DL+ FW+G Y EV+KEMKG+YPKH+W Sbjct: 794 EALGMAQSPILANGKLTVTMELLSPARRPLALTADLASFWQGPYVEVKKEMKGKYPKHLW 853 Query: 793 PDDPANTAPTRRTKK 807 PDDPANT PTR TKK Sbjct: 854 PDDPANTLPTRFTKK 868 >UniRef50_A1TWR1 ATP-dependent helicase HrpB n=3 Tax=Gammaproteobacteria RepID=A1TWR1_MARAV Length = 824 Score = 604 bits (1557), Expect = e-171, Method: Compositional matrix adjust. Identities = 373/835 (44%), Positives = 504/835 (60%), Gaps = 47/835 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+ +LPEL L LL AP GAGK+T +PL LL P +G KI++LEPRRLAAR Sbjct: 2 LPIDGILPELTRTLAKTTTALLQAPPGAGKTTRVPLALLDAPWRDGRKILMLEPRRLAAR 61 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 + A+ +A L E PG TVGYR R V TR+EVVTEG+LTR+IQ DP L V+ Sbjct: 62 SAARYMARQLGEAPGQTVGYRTRLDTRVSGTTRIEVVTEGILTRLIQNDPMLEDYAAVLF 121 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERSLQADL LAL+ + QQ LR+DL+LL+MSATLD + +ML + PV+ SEGR+FP Sbjct: 122 DEFHERSLQADLGLALVRESQQALREDLRLLVMSATLDTAPIAKMLGDVPVISSEGRAFP 181 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V+ Y PL R D V E+L ++GS+L+FLPG GEI+RV +QLA ++ +V+L Sbjct: 182 VDVLYRPLSRSARMVDHVTAVVLEVLGDQAGSVLVFLPGAGEIRRVAQQLAGQLPENVVL 241 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYG L +Q +AI PAP G RKVVLAT IAETSLTIEG+R+VVD Q+R A FDP + Sbjct: 242 APLYGNLKSEEQDRAIAPAPDGSRKVVLATAIAETSLTIEGVRVVVDAGQQRRAVFDPNS 301 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 G+TRLIT RVS+AS QR GRAGR+EPG+ L ++ + A + EI ++DL+ L++ Sbjct: 302 GMTRLITGRVSKASAEQRKGRAGRVEPGVCYRLWSESEQFGLAEFTPAEIQEADLAPLVL 361 Query: 363 ELLQWGCSDPAQMSWLDQPP------VVNLLAAKRLLQMLGALEGERLSAQGQKMAALGN 416 EL QWG P Q++W+D PP V+LL LL GA ++ G+ LG Sbjct: 362 ELAQWGARSPDQVAWIDAPPQAHWQQAVDLLQWLDLLDADGA-----ITDHGKAARDLGM 416 Query: 417 DPRLAAMLVSAKN----------------------DDEAATAAKIAAIL-EEPPRMGNSD 453 PRLA M++ + A +I + + PPR Sbjct: 417 HPRLAHMVLRGRALGFGQLAAELAALLEERDLLGPGSGADLHERIRVVRGQRPPR----- 471 Query: 454 LGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQL 512 G+ +R Q A +Q +++L + R E ++ + +LA A+ DRIARRR G+ RYQL Sbjct: 472 -GLDTARLQ-AVRQAAKRLCREPGSR-SEPVATEVGRVLAQAYPDRIARRRSGEAPRYQL 528 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 +NG GA L +D L+R WL+A L G A +A I LA VD+ +L Q +Q+ + Sbjct: 529 SNGKGASLREHDPLARENWLVA-ADLDGKAR-EATIYLAAPVDLGDLEQDLAAHIQEREE 586 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 WDD +GT+ A ++G L + +PL + + + + Q +L+ +R KGL L W A Q Sbjct: 587 ALWDDKRGTVVARHVRKLGALILAEKPLQQVAPELIQQGLLDAVRRKGLDRLPWNEAARQ 646 Query: 633 LRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 + R+ A P + WP V D +LLA +E+WL P M G+ L LD+ AL LLD Sbjct: 647 WQARVQLLATQFPGH-WPDVTDSALLAGVESWLAPFMAGMQRWSDLARLDLTSALNSLLD 705 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 + QQ LD P +PTG ++ + Y DN P LA ++Q +FG PT+A GRVP+V Sbjct: 706 YPQQQELDELAPKALAIPTGQKVTLDYTADNGPVLAAKLQALFGWTETPTVAGGRVPVVT 765 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LLSPAQRPL +T DL+ FW+ AY +V+KE++GRYPKH WP+DP + TKK Sbjct: 766 HLLSPAQRPLAVTADLASFWQNAYPQVRKELRGRYPKHPWPEDPLTAQAQQGTKK 820 >UniRef50_Q20WW0 ATP-dependent helicase HrpB n=23 Tax=Alphaproteobacteria RepID=Q20WW0_RHOPB Length = 877 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 374/864 (43%), Positives = 520/864 (60%), Gaps = 64/864 (7%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLA 60 + LP+ AVL L +AL +L AP GAGK+T +PL LL P + K II+LEPRR+A Sbjct: 15 TPLPIDAVLDRLGSALAANNVAVLVAPPGAGKTTRVPLALLDAPWLGAKKIIMLEPRRIA 74 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A+ L E+ GDTVGYR+R + V TR+EVVTEG+ +RMI DPEL+G+ + Sbjct: 75 ARASAERMAKTLGERVGDTVGYRVRFGSKVSRATRIEVVTEGIFSRMILDDPELNGIAAI 134 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSL ADL LAL D Q GLR+DL++L+MSAT+D R+ ++L +APV+ S GR+ Sbjct: 135 LFDEFHERSLDADLGLALARDAQVGLREDLRILVMSATIDGARVGKLLGDAPVIESLGRA 194 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR-IGSD 239 +PVE RYL + +A A A LR+ GS+L FLPG EI+R + L R + + Sbjct: 195 YPVETRYLGRKPDAPLERQMAEAIASALRENPGSVLAFLPGAAEIRRTETMLRERVVDAS 254 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + + PL+GAL + Q +AI PAP+G RKVVLAT+IAETSLTIEG+R+VVDC RV R++ Sbjct: 255 IEIVPLFGALDASVQDRAIQPAPKGCRKVVLATSIAETSLTIEGVRIVVDCGMARVPRYE 314 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P GLTRL T R S+A++ QR GRAGR EPG+ L + Q A ++PEIL +DLS Sbjct: 315 PDIGLTRLETVRASRAAVDQRRGRAGRTEPGVCYRLWDEPQTASLPAYTQPEILSADLSS 374 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 LL++L QWG DPAQ+++LD PP L A+ LL LGAL+ E R++ +G+ + AL P Sbjct: 375 LLLDLAQWGVGDPAQLAFLDAPPAPALKEARALLAELGALDTEGRITDEGKSLRALALPP 434 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS-DLGV---AFSRNQPAWQQRSQQLLK 474 RLA M+V A+ AA IAAIL E G+S DL F R++ ++QL + Sbjct: 435 RLARMIVDAQRQGCGEDAAAIAAILTERGLGGDSVDLDARLEQFRRDRSQRAISARQLAQ 494 Query: 475 R----------------------LNVRG------------------GEADSS-------L 487 R +VRG GEA S Sbjct: 495 RWAAPSAPSPLAGEGRGGGSTSTASVRGTPTPNPSPQGGGESRRARGEAAPSQQGAGELT 554 Query: 488 IAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDAR 547 +LA AF DR+A+ RG +G + LANG GA +D AL+R + IA L G+A+ + R Sbjct: 555 TGGMLALAFPDRVAKNRG-NGSFVLANGRGAAIDKTAALARAPY-IAVAELTGTAA-NGR 611 Query: 548 ILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDE 607 ILLA + ++E+ R + D + +D L+ R+ + +T+ P+A + Sbjct: 612 ILLAAPITLEEIEARFAAEIDAVDDISFDRVALALRGRRKRTLHAITLSEAPMAVVPSEA 671 Query: 608 LHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD-----WPAVDDESLLAALE 662 + +G+ GL L W+ +Q R R+ K E D WP + D +L A E Sbjct: 672 TARVFADGLIAAGLDKLPWSKSLKQWRDRVTFLRK--AEGDASQKLWPDLSDAALAEARE 729 Query: 663 TWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHED 722 WL+P + +L+ + + D+ AL GLL W ++ RL+ E P H+ PTG+++AI Y + Sbjct: 730 AWLVPALFDKTALKDVSAGDLSDALMGLLPWDLRARLEREAPTHFEAPTGTQLAIDYEAE 789 Query: 723 NPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKE 782 P +AVR+QE+FG T+P++A G VPLVLELLSPAQRP+Q+TRDL FW+G+Y V+ + Sbjct: 790 QGPTIAVRLQELFGLTTHPSLAGGAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRTD 849 Query: 783 MKGRYPKHVWPDDPANTAPTRRTK 806 ++GRYP+H WP+DPA PTRR K Sbjct: 850 LRGRYPRHPWPEDPAGAPPTRRVK 873 >UniRef50_Q3IHM3 ATP-dependent helicase n=3 Tax=Alteromonadales RepID=Q3IHM3_PSEHT Length = 808 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 343/817 (41%), Positives = 495/817 (60%), Gaps = 27/817 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LPV + +L+ L P LL AP GAGKSTWLPLQL+ G +I++LEPRRLAARN Sbjct: 2 LPVQNIYQQLVITLQSNPITLLQAPPGAGKSTWLPLQLM-RDGHFKRIVMLEPRRLAARN 60 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 +A LA+ NE G +VG R+R ++ V NTRLE+VTEG+LTRM+Q DPELS V L+I D Sbjct: 61 IASYLAKCQNESVGQSVGLRIRGESKVSVNTRLEIVTEGMLTRMLQNDPELSDVDLLIFD 120 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERS+ AD +LA L+ Q LR+DL +++MSATLD R + PV+ S GRS+P+ Sbjct: 121 EFHERSIAADTSLAFALETQSALREDLTIMLMSATLDTQRYTEFFA-CPVIQSNGRSYPI 179 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 + Y+P+ R+ DA+ + L +++GS L+FLPG EI RVQ+ L + + ++ ++ Sbjct: 180 DEVYIPIKDESRWLDAIPTIIKQALSEQTGSALVFLPGQHEILRVQQAL-TDLPNNCIVA 238 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 L+G +Q+ AI PAP+GMRKVVL TN+AETSLTIEGIR+V+D + R A F+ +TG Sbjct: 239 TLFGEQDKANQQAAIAPAPEGMRKVVLTTNVAETSLTIEGIRIVIDSGKHRAATFNLKTG 298 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 +T L TQ +S++S QRAGRAGR+EPG+ L +K+ ER + PEIL SD+S L++E Sbjct: 299 VTELTTQSISRSSAVQRAGRAGRIEPGVVYRLGSKQTFERRNSHDNPEILTSDISQLMLE 358 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAA 422 QWG S +++ LD+P + A LL ML A++ + +L+ G KM G D RLA Sbjct: 359 AKQWGAS-IEELTLLDKPTEQQGIQASNLLSMLEAIDSKGKLTPLGSKMLGFGADIRLAH 417 Query: 423 MLVSAKNDDEAA-----TAAKIAAILEEPPRMGNSDLGVAFSRNQ----PAWQQRSQQLL 473 ML+ A+ ++A A + A+LE N +L +A Q P ++Q+ + Sbjct: 418 MLLKAQALEQALPGIYRLAIYLVALLESRVNTAN-ELSLALHSQQQRPHPVFKQQLKYWQ 476 Query: 474 KRLNVR--GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEW 531 RL V+ G+ ++ ++ L+A A+ DRIA++RG Y LANG GA L+ D ++ Sbjct: 477 SRLKVKESNGDLNTEHLSLLVALAYPDRIAKKRGSG--YLLANGAGAELN-RDYWHNDDY 533 Query: 532 L-IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 L IA + RI A + EL P L E+D+ +++ Sbjct: 534 LAIATM----GGHKGGRIFSATSLSPFELQAYLPHLFSMQTRCEFDEKTARFIHQDEVKL 589 Query: 591 GQLTVKVQPLA-KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 G +T+ QP A K + E +A LN G ++ N +AEQL +R+ A+K + E + Sbjct: 590 GAITLTSQPSAQKLDKSERAKAWLNLFTKHGFALFNEQKDAEQLLIRMSLASKLMSE-KF 648 Query: 650 PAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTV 709 P ++++ L+ WL + + +L LK + ++AL+ DW Q L S LP TV Sbjct: 649 PKINEQQLIQTAPQWLGVFLQDIKTLEQLKKFNYFEALQNCFDWQQQSALKSLLPLRLTV 708 Query: 710 PTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLS 769 +GS I I Y + P L+VRMQE++G + P +AQG++PL++ELLSP +R LQ+T+DL+ Sbjct: 709 ASGSNIRIEYQLEGPAKLSVRMQEVYGMTSTPLLAQGKLPLLMELLSPGKRSLQLTQDLA 768 Query: 770 DFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 FW +YR+VQKEMKGRYPKH WPD PA + T + K Sbjct: 769 HFWNTSYRDVQKEMKGRYPKHFWPDSPATSIATNKVK 805 >UniRef50_Q1JXM2 ATP-dependent helicase HrpB n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXM2_DESAC Length = 834 Score = 594 bits (1531), Expect = e-168, Method: Compositional matrix adjust. Identities = 361/838 (43%), Positives = 490/838 (58%), Gaps = 35/838 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ +LP+LL L V+L A GAGK+T +PL LL + G +II+LEPRRL Sbjct: 1 MMPLPIDHILPQLLAELQTHDSVVLQAEPGAGKTTRVPLALLDAEWLQGQRIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA + A+ ++ L E+PG TVGY +R Q V TR+EVVTEGVLTR +Q DP L GVGL Sbjct: 61 AAVHAARYMSRQLGEEPGQTVGYTIRHQQAVSKQTRIEVVTEGVLTRRLQNDPTLDGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHER+LQADL +AL+ DV+ LRDDLK+L+MSATLD L PVV S+GR Sbjct: 121 IIFDEFHERALQADLGMALVGDVRAALRDDLKVLVMSATLDGAALADYFGGCPVVPSDGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 +PVE L R + V+ A + + ++ G +L+FLPG EIQR LA R+ D Sbjct: 181 CYPVE--VFHLGDDDRLEVQVSRAVHKAVAEQPGDVLVFLPGAREIQRCCNALAGRLDGD 238 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 +L+ PLYGAL Q++AI P + RKVVLATNIAETSLTIEG+R+V+D ER+ F+ Sbjct: 239 ILVLPLYGALPFEQQQQAIQPTTR--RKVVLATNIAETSLTIEGVRVVIDSGLERLMTFE 296 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 PRTG+ RL+T+R+SQAS+ QR+GRAGR G L + + PEIL+SDL+ Sbjct: 297 PRTGMNRLVTRRISQASVRQRSGRAGRTAAGACYRLWSPQAEAAMIDYVAPEILRSDLTS 356 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGNDP 418 L +EL+ WG ++ + W+D PP ++ AA LL L A+ E RL+ G+ M L P Sbjct: 357 LALELIAWGVTEADALPWVDAPPAAHMNAAFNLLLQLDAIDEQRRLTTVGRAMTRLPLHP 416 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDL-----------------GVAFS 459 RLA MLV+A++++E A ++A +LE P R G SD + S Sbjct: 417 RLARMLVAAEDENEQVLACQLAVVLESPQWFRSGQSDTVSDSDLLDHLEQWQPHGKKSSS 476 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEA---DSSLIAPLLAGAFADRIARRR-----GQDGRYQ 511 R P Q +QL +RL +S + LL A+ DR+A++R G + Sbjct: 477 RISPLAHQSYRQLCRRLGCSPTTTPSRNSVALGRLLIAAYPDRVAQKRDGSIEGSTDHFL 536 Query: 512 LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 L+NG GA L + +H WL+A + ++ SAS +A I A +D +L P V Sbjct: 537 LSNGRGARLSPRCRVRQHRWLVA-VDVEFSASGEALIHRASALDERQLDNMWPHPVNWQM 595 Query: 572 TVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 WDD+ + + G L + +P A +E L +L IR GL LNWT E Sbjct: 596 ETVWDDSGQRVVTREARRWGALLLSSRPHALDAEQAL-PIVLEQIRSGGLERLNWTKETL 654 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 LR R+ + DWP VDD +LL +L WL P + G+ L + L++ + L LL Sbjct: 655 CLRQRMAFVQQHQLVDDWPQVDDAALLDSLNVWLAPWLNGMSRLDQVAKLNLLEPLCSLL 714 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 W +Q+LD P TVP+GSRIA+ Y + + P LA ++QE+FG P I +GRVP++ Sbjct: 715 SWPQRQQLDELAPERLTVPSGSRIAVDYSDPHQPVLAAKLQELFGWQQTPRIGKGRVPVM 774 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 L LLSPA+RP+Q T DL++FW Y EV+KE+KGRYPKH WPDDP R KK S Sbjct: 775 LHLLSPARRPMQTTTDLANFWATTYDEVKKELKGRYPKHPWPDDPLQAPAQRGVKKRS 832 >UniRef50_A4XYS1 ATP-dependent helicase HrpB n=13 Tax=Gammaproteobacteria RepID=A4XYS1_PSEMY Length = 844 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 399/848 (47%), Positives = 527/848 (62%), Gaps = 49/848 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M++LP+ A+LP L AL +V+L AP GAGK+T +PL LL P + G+ I++LEPRRL Sbjct: 1 MNALPIDALLPALRDALSARHEVVLEAPPGAGKTTRVPLALLDAPWLAGQTILMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+RLA L E+ G+TVGYR+R + VGPNTR+EVVTEG+L R +Q DP L GVGL Sbjct: 61 AARAAAERLASELGERVGETVGYRIRLDSKVGPNTRIEVVTEGILARRLQDDPALEGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDD------LKLLIMSATLDNDRLQQMLPEAPV 173 V+ DEFHERSL ADLALAL L+ + R + LK+L+MSATL+ +RL +L EAPV Sbjct: 121 VVFDEFHERSLDADLALALTLNGRAMFRGEGSGEAPLKVLLMSATLEGERLAALLGEAPV 180 Query: 174 VISEGRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 + SEGR FPV+ + P + + V + L E GSLL+FLPG EI+RV EQL Sbjct: 181 LRSEGRMFPVDICWGAPFQPGEWIEPRVLQTVQQALADEPGSLLVFLPGQAEIRRVAEQL 240 Query: 233 ASRIGS--DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + D+LLCPL+G L L QR AI PAP G RKVVLATNIAETSLTI+G+R+VVD Sbjct: 241 GEALAGRDDILLCPLHGELDLAAQRAAIEPAPAGTRKVVLATNIAETSLTIDGVRVVVDA 300 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 RV RFDP +G+TRL TQR+S+AS TQRAGRAGRL+PG+ L ++ Q E+ +A S Sbjct: 301 GLARVPRFDPASGMTRLDTQRISRASATQRAGRAGRLQPGVCYRLWSQAQHEQLSAYSGA 360 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER--LSAQG 408 EIL +DL+GL ++LL+WG + P ++SWLD PP A LL LGAL+ ER L+A G Sbjct: 361 EILAADLAGLALQLLRWGVT-PQELSWLDVPPPAAYAQALDLLGRLGALD-ERGALNAHG 418 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAF-------- 458 Q MA L + PR+A +L+ + A A +AA+L E R G +DL Sbjct: 419 QAMAELPSHPRIAHLLLRGQALGLGALACDLAALLSERDILRGGGADLHSRLALLSGESR 478 Query: 459 -SRNQPAWQQRSQQLLKRLN-------VRGGEADSS---LIAPLLAGAFADRIA-RRRGQ 506 +R+ QR++QL K+ V G +D + LLA A+ DRIA +RR Sbjct: 479 ATRSAQGGVQRARQLAKQFQGLLKGRLVIGAVSDPEHPRWLGCLLAFAYPDRIAQQRRAG 538 Query: 507 DGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQL 566 Y+LANG A DAL +HEWL+ L + RI LA +D + + Sbjct: 539 GADYRLANGRAAQFAEADALMKHEWLVVADLGSRQGQREERIYLAADLDPALFERELAEQ 598 Query: 567 VQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNW 626 V + ++WD+ +G L+A R+ ++G+L ++ Q LA ED +A++ +R KGL +L W Sbjct: 599 VTTLEVLDWDEREGVLRAERQRKVGELVLERQALAALDEDTRSRALVGLVRRKGLELLPW 658 Query: 627 TAEAEQLRLRLLCAAKWLPEYD--------WPAVDDESLLAALETWLLPHMTGVHSLRGL 678 T E Q + R+ L E D WP + D +LLA+LE WL P + V+ L Sbjct: 659 TPELRQWQARVAL----LRELDLQQHGQSEWPDLSDAALLASLEQWLAPFLGKVNRLSHF 714 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 +LD+ L+ LL W + QRLD P +VP+GSRIAI Y E NPP LAVR+QE+FG A Sbjct: 715 ANLDLPAILQTLLPWPLPQRLDELAPRTLSVPSGSRIAIDYTE-NPPVLAVRLQELFGLA 773 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN 798 P IA GR+ L L LLSPA+RP+Q+T+DL+ FW Y EV+K++KGRYPKH WPDDP Sbjct: 774 ATPRIAGGRLGLKLHLLSPARRPVQVTQDLASFWANTYLEVKKDLKGRYPKHYWPDDPLI 833 Query: 799 TAPTRRTK 806 PT R K Sbjct: 834 AEPTARAK 841 >UniRef50_B0TA29 ATP-dependent helicase hrpb n=3 Tax=Bacteria RepID=B0TA29_HELMI Length = 874 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 380/876 (43%), Positives = 518/876 (59%), Gaps = 75/876 (8%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M+SLP+ A+LP L AL +L AP GAGK+T +PL LL P + G+ II+LEPRRL Sbjct: 1 MTSLPIEAILPALKEALRVRTSTVLVAPPGAGKTTRVPLALLNEPWLAGRRIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+ A+ +A L E G+TVG+R+R + VGP+T +EVVTEGVLTR +Q DP L VGL Sbjct: 61 AARSAARHMAVSLGEAVGETVGFRVRLETRVGPSTAIEVVTEGVLTRRLQADPALEDVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL LAL L Q LR+DL++L+MSATLD + + +L +AP++ SEGR Sbjct: 121 VIFDEFHERSLAADLGLALCLQSQALLREDLRILVMSATLDAEPVAALLGDAPIIASEGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR-IGS 238 F V+ RYL + VA E L + G +L+FLPG+ EI+RV+ +L +G+ Sbjct: 181 PFSVDTRYLERRTEGTMEAQVARTVREALLNDEGDILVFLPGMKEIRRVEARLVEMGVGT 240 Query: 239 -DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 V +CPL+G L L+ Q +AI P P G+RKVVLAT+IAETSLT+EGIR+VVD RV R Sbjct: 241 GKVRICPLHGGLPLDAQDRAIAPCPPGIRKVVLATSIAETSLTVEGIRVVVDSGLMRVPR 300 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 F PRTG++RL T VS+AS QR GRAGRL PG+ L + + R A +S PEIL++DL Sbjct: 301 FSPRTGMSRLETVPVSRASADQRRGRAGRLGPGVCYRLWTQPEDLRLAPRSAPEILEADL 360 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GER-----LSAQGQK 410 + L +EL WG DP ++ WLD PP L A+ LL LGALE G+R ++ QG++ Sbjct: 361 APLALELAAWGIKDPGELQWLDPPPAAAFLHARELLIQLGALEADGQRGTGGLITPQGRR 420 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-------------------GN 451 MA G PRLA M++ A A ++AAIL E GN Sbjct: 421 MAEAGLHPRLAHMVLQAIPMGLGKVACRLAAILSERDFFRDGGVRRDADLRLRLEALDGN 480 Query: 452 ----SDLGVAFS------------------------RNQPAWQQR----SQQLLKRLNV- 478 D+G AF R++P ++ + Q K L V Sbjct: 481 FRDSEDVGAAFGVAVDLAARRRILAEASALQRAFGLRDEPCDEKSEAYVASQPEKVLPVF 540 Query: 479 ------RGGEADSSLIAPLLAGAFA--DRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 R +S + A L AFA DRI +RR DGR+ L NG GA L Sbjct: 541 MEEDVCRSDRWESCVDACGLLLAFAFPDRIGQRR-PDGRFLLRNGRGAAFADVQPLCNSP 599 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 +L+A L P++RI+LA V+ ++L + +++ V W+ + ++A +R ++ Sbjct: 600 YLVAAEL--DDQGPESRIILAAPVESEDLERYFGGQIEKERLVVWERSSQAVRARQRERL 657 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 G L ++ + LA + + +A+L G+R++GL++L+WT A Q + RL A+W + DW Sbjct: 658 GALVLRERSLADVEPEAIQKALLAGVREEGLAILSWTKAARQFQERLQFMARW--DDDWL 715 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 DE+LLA LE WL PH+ G+ S L+ LD+ + L L W ++ LD P H VP Sbjct: 716 DASDEALLAKLEDWLGPHLYGMKSRNDLQRLDVREILEATLTWDRRRELDECAPTHILVP 775 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 +G R+ I Y P LAVR+QEMFG P I +GRVPL L LLSPAQRP+Q+T+DL+ Sbjct: 776 SGRRVPIDYGTPEAPVLAVRLQEMFGLKDTPRICRGRVPLTLHLLSPAQRPVQVTQDLAS 835 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 FW+ AY EV+K++KGRYPKH WP+DP PT R + Sbjct: 836 FWRDAYFEVRKDLKGRYPKHYWPEDPREAIPTSRVR 871 >UniRef50_Q11QG4 ATP-dependent helicase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11QG4_CYTH3 Length = 826 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 340/831 (40%), Positives = 485/831 (58%), Gaps = 32/831 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRL 59 M+ P+A ++ E+ L+ V+L AP GAGKST LPL+LL + KIILLEPRR+ Sbjct: 1 MNQYPIAEIVEEIKETLNLQTTVILQAPPGAGKSTILPLELLKADWLEEKKIILLEPRRM 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+VAQR+A+LL E+ G TVGYR+R V TR+EVVTEG+LTR +Q+D L GVG+ Sbjct: 61 AARSVAQRMADLLGEEVGKTVGYRVRFDQRVSAQTRIEVVTEGILTRRLQQDNTLEGVGM 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL +DL+LAL D+QQ LR+DL++LIMSATLD + L +L +AP++ S+GR Sbjct: 121 VIFDEFHERSLHSDLSLALCRDLQQILREDLRILIMSATLDGENLSAILDKAPIITSKGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 +P++ RY + + + +++L++E+G +L+FLPGV EIQ+ L R G D Sbjct: 181 QYPIDVRYTSIDTNAPISGQITTVISKVLKEETGDILVFLPGVREIQQTAAALTERHG-D 239 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + + PLYG LSLN Q++AI P Q RKVVLAT+IAETSLTIEGI +V+D RV +FD Sbjct: 240 IAVRPLYGELSLNAQQEAIRPDAQQRRKVVLATSIAETSLTIEGIHIVIDSGLARVPKFD 299 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +G+T+L T +V+Q + QRAGRAGRL PGI++ L + + Q PEI ++DL+ Sbjct: 300 PNSGMTKLETVKVTQDAADQRAGRAGRLGPGIAIRLWPEATQQYLKPQRVPEIAEADLAP 359 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPR 419 L++EL QWG D M+W+ PP ++ A+ LLQ L A++ ++ G+ +A L PR Sbjct: 360 LVLELAQWGVRDIQSMTWITAPPSGSVDQARTLLQELDAIQNGVITEDGKALANLPTHPR 419 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGN---SDLGVAFSRNQPAW----------- 465 A +L+ K A + ILEE +G +D+ + Q AW Sbjct: 420 TAHLLLKGKEHTILPLAIDLVCILEERDALGKHAGADISLRVDALQ-AWRAGKRFQGDTF 478 Query: 466 -----QQRSQQLLKRLNVRGG--EADSSLIAPLLAGAFADRIAR-RRGQDGRYQLANGMG 517 ++ Q K +++ E D+ I L+A A+ +RIAR RY++AN Sbjct: 479 ILERIERAVQSWRKIFSIKSSVYEFDTDSIGLLIAAAYPERIARLVDAASARYRMANSRN 538 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 L ND L + EWL G + RI A ++ L R +VQ++ + WD+ Sbjct: 539 VRLHENDVLVKEEWLAVAHADAGVG--EGRIYWAAALNPMLLTDR---MVQEA-RIRWDE 592 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 +G L +IG LTV +PL + E A+ +R +GL + NW Q + R+ Sbjct: 593 TKGVLLQQEETRIGSLTVTSKPLKEVDETLRAAALCEAVRKEGLKIFNWDEACVQWQARI 652 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 L +W P WP VD E LL LE WL ++ V K + + + L +L W + Sbjct: 653 LSLKQWRPTEAWPNVDAEGLLQTLEDWLPFYLKQVKRREDFKKIPLPEVLHTILPWEQAK 712 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNP-PALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 L P H VP+GS IA+ Y D P L+VR+QE+FG PT+ +GR +++ LLS Sbjct: 713 ILAKLAPTHIDVPSGSSIALEYKTDGSFPVLSVRLQELFGLTDTPTVNEGRTKVMIHLLS 772 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 P +P+Q+T+DL FW Y EV+KE++ RYPKH WP+DP N R K+ Sbjct: 773 PGYKPVQVTQDLKSFWANTYPEVRKELRMRYPKHSWPEDPWNAEAVRGVKR 823 >UniRef50_Q21KE4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=Q21KE4_SACD2 Length = 864 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 376/851 (44%), Positives = 495/851 (58%), Gaps = 51/851 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAA 61 SLP+ LP + L + +++L AP GAGK+T +PL LL P NGK II+LEPRRLAA Sbjct: 12 SLPINDALPAIEATLLASNELVLEAPPGAGKTTVVPLALLNAPWRNGKKIIVLEPRRLAA 71 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 RN A R+A LL E+ +TVGYR+R NCVG NT +EVVTEGV TRM+Q DP L V +VI Sbjct: 72 RNAASRMASLLGERCAETVGYRVRMDNCVGANTVIEVVTEGVFTRMLQADPTLDDVAIVI 131 Query: 122 LDEFHERSLQADLALALL--LDVQQG-LRDD-LKLLIMSATLDNDRLQQMLPEAPVVISE 177 DEFHERSL ADL LALL +V G +R+ +K L+MSATL+ +L L APVV SE Sbjct: 132 FDEFHERSLDADLGLALLQQSNVLYGDMREQPIKTLVMSATLNGSQLSDYLGGAPVVTSE 191 Query: 178 GRSFPVERRYL-PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL---- 232 GR FPV+ Y P Q A A + + + GS+L+FLPG EI+ L Sbjct: 192 GRMFPVDVAYSDPYTPQQDSAARAAQAVNKAIAEYKGSILVFLPGRKEIEACARALRNWV 251 Query: 233 -ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 A + + +CPLYG LSL DQ++AI PA G KVVLATNIAE+SLTIEG+ +VVD Sbjct: 252 EAGELPKALAICPLYGDLSLADQQQAIAPAGAGTTKVVLATNIAESSLTIEGVSIVVDSG 311 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 +R AR+DP TG+TRL R+S+AS QRAGRAGRLEPG+ + L +K Q A + PE Sbjct: 312 LQREARYDPNTGMTRLNLCRISKASAEQRAGRAGRLEPGVCIRLWSKSQQSELAQYASPE 371 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE----GERLSAQ 407 I +D+ L ++LLQWG +D AQ+ WLD P A LL+ L AL+ G L+A Sbjct: 372 IQHADMVPLALQLLQWGEADCAQIPWLDAPAPARYTQAIELLEQLEALKDNGGGISLTAL 431 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN-----Q 462 G+ MA L PRLA MLV AK A +AA+L E +G +++G FSR Q Sbjct: 432 GEAMAGLPVHPRLAHMLVVAKQLALQDLACTLAALLSE-RDIGTANMGADFSRRVHWLLQ 490 Query: 463 PAWQQRS-QQLLKRLN------------VRGGEADSSL-------------IAPLLAGAF 496 P + Q LKRLN V + +L IA LLA AF Sbjct: 491 PQGAPKQLQGALKRLNALKKMLAQQLNRVTSPSLERALAVSEVIVLSQQEQIALLLACAF 550 Query: 497 ADRIAR-RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVD 555 DRIAR R+ +Y LANG A L +D+L EWL+ + I LA + Sbjct: 551 PDRIARARKNNPTQYLLANGRQANLFNDDSLVGEEWLVVAEASSQQGRSNDIIRLAAPIS 610 Query: 556 IDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNG 615 + L Q + + + EWD+ + + +R+ +G + + + L + A+ Sbjct: 611 LALLQQAFSAKLVEKNVCEWDENANRIVSEQRVALGAIILSAKQLTQADPALRVAAVRAL 670 Query: 616 IRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSL 675 I KGL VL WTA+A LR RL + +WP+ DE LL A++ WL P++ V++ Sbjct: 671 INKKGLGVLEWTADAINLRARLQLLHS--VDTNWPSWSDELLLGAIDDWLSPYLHSVNTG 728 Query: 676 RGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMF 735 L+ + I +AL L W Q LD P + VP+G + I Y + NPP +A ++QE+F Sbjct: 729 ADLRKVKIAEALTATLSWEQQVELDKLAPVSFCVPSGRDVPIDYSQ-NPPVIAAKLQELF 787 Query: 736 GEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDD 795 G A P+I G+VPL++ LLSPA +PLQ+T+DL FW+GAY EV+KEMKGRYPKH WPDD Sbjct: 788 GSAIAPSIVNGKVPLLIHLLSPAGKPLQVTQDLMSFWRGAYTEVKKEMKGRYPKHPWPDD 847 Query: 796 PANTAPTRRTK 806 P PTR+TK Sbjct: 848 PIMAMPTRKTK 858 >UniRef50_B5JVW3 ATP-dependent helicase HrpB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVW3_9GAMM Length = 848 Score = 581 bits (1497), Expect = e-164, Method: Compositional matrix adjust. Identities = 373/846 (44%), Positives = 512/846 (60%), Gaps = 45/846 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 +SSLP+ AVL ++ AL + +L AP GAGK+T +PL LL H G KI++LEPRRL Sbjct: 2 LSSLPIHAVLDDVSNALTQHNRAILQAPPGAGKTTAVPLALLDHALFQGQKIVVLEPRRL 61 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+AELL E+ GDTVGYR+R V TR+EVVTEG+LTRM+Q+DPEL G+ Sbjct: 62 AARRAAERMAELLGERVGDTVGYRIRLDTKVSARTRIEVVTEGILTRMLQKDPELLGIAA 121 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-----PEAPVV 174 V+ DEFHERSLQADLALA L QQ LR+DL+LLIMSATLD +QQ+L P++ Sbjct: 122 VLFDEFHERSLQADLALAFCLQSQQLLREDLRLLIMSATLDGAGIQQLLSRIDGSHTPMI 181 Query: 175 ISEGRSFPVERRYL---PLPAHQR--FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 SEGRSF VE RYL P A ++ + D +A T + L +E GS L+F+PG GEIQ++ Sbjct: 182 TSEGRSFAVETRYLTKAPPAAREKRAWLDGLAQLTQKALAEEHGSALVFVPGQGEIQQLA 241 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 ++L +R+ D + PLYGALS +Q +AI PAP+G RKVVLATNIAETSLTIEGIR+VVD Sbjct: 242 QRLQTRVDEDTQIAPLYGALSKAEQDRAIAPAPKGQRKVVLATNIAETSLTIEGIRIVVD 301 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 +R ARF P TG++ L+T+ +++ + QR GRAGRLE G+ + AA S Sbjct: 302 GGLQRRARFAPNTGMSGLVTEAIARDAADQRRGRAGRLEAGVCYRYWCENDTR--AAHSP 359 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 EI SDL+ L+E+ QWG +D +++ WL PP + + LL LGA++ + R++A G Sbjct: 360 AEIEHSDLAPALLEIAQWGITDLSELYWLSPPPEQQVKRGRELLLSLGAIDEQLRITAHG 419 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE-----PPRMGNSDL-----GVAF 458 + LG PRL ML+ ++ TA +AA+LEE + ++DL V Sbjct: 420 SDLLQLGLHPRLGHMLLHSRYWQAEHTACTLAALLEERDPLPKEKSQSADLQRRLDAVKR 479 Query: 459 SRNQPAWQ---QRSQQL---LKRLNVRGGEAD----SSLIAPLLAGAFADRIAR-RRGQD 507 S PA + QRSQQL L+RL + G D S + LLA A+ DRIA+ R ++ Sbjct: 480 SSASPAIKAILQRSQQLAQRLRRLALTGDATDTIDHSEQLGLLLALAYPDRIAQNRHDRE 539 Query: 508 GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLV 567 R+ L+ G GA ++D L+ ++L+ L DARI A + + + L+ Sbjct: 540 RRFLLSGGKGAFFISDDPLAAQDYLVISDL--DGQRKDARIFRAASLSKNAIETHLSTLI 597 Query: 568 QQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWT 627 + + V WD+AQ + A R ++G L + Q + +P++ +A+L G+R +G LN Sbjct: 598 RHEERVSWDEAQQRVSAERIARLGALVLARQNI-RPNQALTQRALLAGLRQRGELPLNAA 656 Query: 628 AEAEQLRLRLLCAAKWLPEY------DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSL 681 A++ Q R+ L + + P + + LL LE WLLP + +SL L L Sbjct: 657 AQSLQARVMFLQRQQNQSNHPLGIRAPLPDLSNAHLLDTLEEWLLPFLGHQNSLDKLAQL 716 Query: 682 DIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNP 741 D L G +DW QQ +D P VP+GS I I Y E +PP LAVR+QE+FG P Sbjct: 717 DWKSLLLGQIDWEQQQAIDQLAPETLVVPSGSHIRIDYSE-HPPVLAVRLQELFGLNNTP 775 Query: 742 TIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAP 801 IA G PL++ LLSPAQRP+Q+T+DL FWK Y EV+KE++ +Y KH WP+DP Sbjct: 776 AIANGHCPLMIHLLSPAQRPVQVTQDLPSFWKNTYPEVRKELRIKYQKHYWPEDPTQAQA 835 Query: 802 TRRTKK 807 TR TKK Sbjct: 836 TRHTKK 841 >UniRef50_Q15YM0 ATP-dependent helicase HrpB n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YM0_PSEA6 Length = 823 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 334/819 (40%), Positives = 483/819 (58%), Gaps = 17/819 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 + LPV LP L L+ V+L AP GAGKST +PL LL H KII+L+PRR+A Sbjct: 3 TQLPVEDTLPALHDGLN-NNDVILVAPPGAGKSTRVPLALLQHSTFATRKIIMLQPRRIA 61 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARN+A LA+ L E+ G TVGYR+R + V TRLE+VTEG+LTRM+Q DPELS V LV Sbjct: 62 ARNIAHYLAKQLGEEVGQTVGYRIRGDSRVSKATRLEIVTEGILTRMLQNDPELSSVSLV 121 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ AD +LAL L+V+ LRDDL+LL+MSATLD L+++LP A + EGR Sbjct: 122 IFDEFHERSMHADFSLALCLEVKDALRDDLRLLVMSATLDVSSLEKLLPNADSIACEGRG 181 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +P+E Y P D A T + G +L+FLPG EI+R ++ LA + Sbjct: 182 YPIETYYRPDATAGSIVDKTARLTLFAAAEHQGDILVFLPGQAEIRRCEKILAQSLSKGC 241 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+ +L Q A+LP PQG RK++LATNIAETSLTIEG+ +VVD ++ A + Sbjct: 242 QIHCLFSQQTLAAQEAALLPDPQGRRKIILATNIAETSLTIEGVSVVVDSGMQKGAIYQL 301 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 GLT+L +Q +S+AS QRAGRAGRL PG+ L +KEQ +R A + EIL SD+S Sbjct: 302 NKGLTQLRSQMISKASAIQRAGRAGRLGPGVCYRLWSKEQHQRLAEHGQAEILTSDISPF 361 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 L+E WG + ++ + +D P + A +L L ++ +++ G+++ +LG+ Sbjct: 362 LLEACVWG-AQISEFALIDMPSDAQIAQAHSVLMGLQIIDANFQVTPHGKEVHSLGSQAH 420 Query: 420 LAAMLVSAK--NDDEAATAAKIAAILEEPPRMGNSDLGVAFSR--------NQPAWQQRS 469 +A ML+ + + + A +AA+LE+ +G + + R + P W+ Sbjct: 421 IATMLLKSSELSAGHRSLACALAALLEDKDPLGAQAGSLCYDRLTLLQQHKSHPLWRA-I 479 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRH 529 +Q K+L LL AF IA + GRY L +G GA L +D+L Sbjct: 480 RQWHKKLACDVTHWPLEDTGVLLGFAFPHWIA-KASDSGRYGLVDGTGAQLSEHDSLMGQ 538 Query: 530 EWL-IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 WL + ++L SA +A+I+LA + ++ + L+ EWD ++ + Sbjct: 539 SWLAVGQMMLTNSAQSNAKIMLAEPLSRQQIDKYFNHLIDSETRCEWDSSRSAIVTQSVQ 598 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD 648 ++G++ +K P AKPS +++ I+++G+ L + A QL RL A ++L + Sbjct: 599 RLGRIVLKKMPSAKPSVEQITALWHKQIKERGVMSLPFNDAALQLIYRLRMAKEYLTDGQ 658 Query: 649 WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYT 708 WP V + LL+ L WL+P++ V S + L LD Y L LD+ QQ L+ P T Sbjct: 659 WPDVSEFGLLSNLHHWLMPYLHDVLSWQQLSKLDFYSLLFNQLDYASQQALNQLFPTKIT 718 Query: 709 VPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDL 768 VP+ SRI+++Y + +L+VRMQE++G A P++A+G+V + + LLSPA RPLQ T+DL Sbjct: 719 VPSTSRISVQYDDVGGASLSVRMQEVYGLADTPSVARGKVKIQMILLSPAGRPLQQTQDL 778 Query: 769 SDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 + FWKG+Y+EVQKEMKGRY KH WPDDPAN T +TKK Sbjct: 779 AGFWKGSYKEVQKEMKGRYQKHFWPDDPANAQATSKTKK 817 >UniRef50_A8IJC9 ATP-dependent helicase n=43 Tax=cellular organisms RepID=A8IJC9_AZOC5 Length = 852 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 366/825 (44%), Positives = 500/825 (60%), Gaps = 27/825 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 + LP+ LP L L +L AP GAGK+T +PL LL P + G KI++LEPRRLA Sbjct: 31 TRLPIDDALPALTATLRDHVAAVLVAPPGAGKTTRVPLALLDEPWVKGGKILVLEPRRLA 90 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A+ L EK G+TVGYR+R ++ V TR+EV+TEGV TRM+ DPELSG+ V Sbjct: 91 ARAAAHRMAQTLKEKVGETVGYRVRLRSEVSRRTRIEVITEGVFTRMVLDDPELSGIAAV 150 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISE 177 + DE+HERSL ADL LAL L+ Q+GLRDDL+LL MSATLD R+ +L + APVV SE Sbjct: 151 LFDEYHERSLDADLGLALALETQRGLRDDLRLLAMSATLDGARVAALLGDGAPAPVVESE 210 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI- 236 GR++PV+ RYL + V A + L E GS+L FLPG EI+R Q L + + Sbjct: 211 GRAYPVDTRYLGRDPRAPIERQVVDAVLKALSAERGSVLAFLPGAAEIRRTQTHLLADVR 270 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 D + L+GAL +Q +A+LPAP G RKVVLAT+IAETSLTIEG+R+VVDC RV Sbjct: 271 DRDTDIVALFGALDAAEQDRAVLPAPPGKRKVVLATSIAETSLTIEGVRVVVDCGLARVP 330 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 RF+P GLTRL T RVS+A+ QR GRAGR EPG+ L + + + A + PEIL +D Sbjct: 331 RFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWGEGETQSLPAFATPEILAAD 390 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALG 415 LSGL+++L G DP + +LD PP+ + AK LL++L A++ + ++ G +MA L Sbjct: 391 LSGLVLDLASAGVRDPRALPFLDPPPLPAVTEAKNLLRVLDAIDADGAVTPLGARMARLP 450 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS-DLGVA---FSRNQPAWQQRSQQ 471 PRLA M+V + +AA IAA+L E G+S DL F R + + +++ Sbjct: 451 LPPRLAHMVVRGSDLGAGESAADIAALLTERGLGGDSPDLAHRLEDFRRERSRRAEDARR 510 Query: 472 LLKRLN--------VRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDAN 523 L R + GE S A LLA A+ DR+A+ RG R LANG GA++D Sbjct: 511 LAGRWAELARESHPPKAGETPSP--AALLALAYPDRVAKARGDGTRILLANGRGAVVDPA 568 Query: 524 DALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583 +L+R +L A + G A AR+ LA + +E+ + + V +D A +++ Sbjct: 569 SSLARAPYL-AVAEISGRAD-AARVQLAAAISGEEIERLFADAITAGLEVAFDPATASVR 626 Query: 584 AWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR--LRLLCAA 641 A ++G LT+ +P P+ E A+ G+ D G+ L WT Q R +R L A Sbjct: 627 ARETRRLGALTLADRPQPVPNTPETAAALAEGLADLGIERLPWTPALTQWRDRVRFLHQA 686 Query: 642 KWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDS 701 + P WP + D L A WL P +TG SL + + D+ AL LL + + RL++ Sbjct: 687 EGAP---WPDLSDAQLAATAAEWLAPFLTGRTSLGQVSAGDLGNALHALLPYELTHRLET 743 Query: 702 ELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRP 761 E P+H+T PTGS + I Y + P L VR+QE+FG +P IA G+VPL L LLSPA RP Sbjct: 744 EAPSHFTAPTGSNLPIDYAAEGGPLLPVRVQELFGLTRHPAIAGGKVPLTLALLSPAHRP 803 Query: 762 LQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 +Q+T+DL FW+G++R+V+ EM+GRYPKH WP+DPAN PT R K Sbjct: 804 IQVTKDLPQFWQGSWRDVRAEMRGRYPKHPWPEDPANAPPTNRAK 848 >UniRef50_B3EB95 ATP-dependent helicase HrpB n=1 Tax=Geobacter lovleyi SZ RepID=B3EB95_GEOLS Length = 798 Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust. Identities = 356/813 (43%), Positives = 496/813 (61%), Gaps = 30/813 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLA 60 + LP+ VLP+LL L ++LSAP GAGK+T +PL LL P NG+I++LEPRR+A Sbjct: 4 ACLPIDRVLPQLLATLQTHASIVLSAPPGAGKTTRVPLALLKIIPPGNGRILMLEPRRIA 63 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A + A+ +A L E+ G TVGY +R + + TR+EVVTEG+LTR +Q DPEL+GV + Sbjct: 64 AVSAARYMAASLGEQVGQTVGYTIRFERRLSAQTRIEVVTEGILTRRLQEDPELAGVACI 123 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ ADL LAL L+ Q LR DLKLL+MSATLD L ++L +AP++ SEGRS Sbjct: 124 IFDEFHERSIHADLGLALCLEAQAALRPDLKLLVMSATLDCAPLAKLLGDAPILSSEGRS 183 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 F V+ RYLP+ Q +A A LR G LL FLPG EI+ VQ +L + D Sbjct: 184 FAVDLRYLPVTNRQPLAGQMAGAIRLALRDNPGDLLAFLPGSSEIRAVQRELDGSV--DG 241 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 ++CPLYG L Q++AI P + R+VVLATNIAETSLTI G+R+VVD R +FDP Sbjct: 242 MICPLYGDLPFEQQQQAIQPGTR--RRVVLATNIAETSLTINGVRIVVDSGLTRRLQFDP 299 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 TGL RL+T R S+AS QR GRAGR PG+ L ++ + + PE+L +DL+ L Sbjct: 300 ATGLERLMTVRASRASALQRTGRAGRTGPGVCYRLYGEQSFQAMTPFTPPEMLTADLAPL 359 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPR 419 ++EL WG + P +SWLDQPP +L AA+ LLQ+LGAL+ ++ G++M L PR Sbjct: 360 VLELAAWGAT-PDGLSWLDQPPAAHLAAAQALLQLLGALDRNGAITGLGRRMVRLPLHPR 418 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVR 479 LA +L++ + A ++AA L S+ A + A +Q QQLL+ + R Sbjct: 419 LARLLIAGQELQLLPEACRLAAEL--------SNRSSALT----AIEQTEQQLLQLMGGR 466 Query: 480 GGE----ADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIA 534 + ++ APLL A+ DRIARRR G +GRY LA+G GA SR E L+A Sbjct: 467 RKRGILPSADAVRAPLLILAWPDRIARRRPGDEGRYLLASGRGAACRN----SRAELLVA 522 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLT 594 L + G + I + + +D+L Q PQL+ + +V WD A + A + QI + Sbjct: 523 -LQVDGGDGAEGVIHQSAAITVDQLRQTVPQLITRQRSVSWDQAAARVAATEQEQIRAVV 581 Query: 595 VKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 + + +A + E +L +R +G+++L W+ A QL+ R++ A + LPE WP + D Sbjct: 582 LSSRQIAA-DDAEATALLLEQLRCQGVALLGWSETARQLQSRVILAGRLLPEEGWPDLSD 640 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSR 714 L E WL ++G+ S + L L I L+ L+ W + Q LDS +PA TVP+G R Sbjct: 641 TWLSEHPEQWLANRLSGLRSQQDLGQLAILPLLQELVGWKLMQLLDSVVPAGLTVPSGRR 700 Query: 715 IAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKG 774 I + Y + P L+V++QE+FG A +P I GR +++ LLSPA RP+ +TRDL FW+ Sbjct: 701 IGLDYTDQEGPVLSVKLQELFGLAESPLICHGRRAVLVHLLSPAGRPVAVTRDLKGFWER 760 Query: 775 AYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 Y EV+KE++GRYPKH WPDDP N T +TKK Sbjct: 761 GYLEVRKELRGRYPKHPWPDDPWNAVATHKTKK 793 >UniRef50_A6Q8R2 ATP-dependent helicase HrpB n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q8R2_SULNB Length = 827 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 333/833 (39%), Positives = 499/833 (59%), Gaps = 34/833 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M +LP+ VLP++ L +++L AP GAGK+T LPL LL P + GK II+LEPRRL Sbjct: 1 MQTLPITHVLPKVKEKLIHHNRLVLQAPPGAGKTTALPLALLDEPWLEGKKIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A R+ A R+AELL EK G +GY+++ ++ T++ +VTEG+LTR +Q DP L V L Sbjct: 61 AVRSSAARMAELLGEKVGQRIGYQIKMESVQSRATKILIVTEGILTRKLQNDPALESVAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHERSL ADL+LAL L+ Q LR+D+K+L+MSATL+ + +L APV+ S+GR Sbjct: 121 IIFDEFHERSLHADLSLALALESQSVLREDMKILVMSATLNTAAISTLLDNAPVIESQGR 180 Query: 180 SFPVERRYL----PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +FPVER +L P P + + ++L +E G++L+FLPGV +I+ V++ L Sbjct: 181 AFPVERIHLDAGTPQPTLKTLPSYIHKLLLKLLAEEEGNILVFLPGVRQIKAVEKLLNES 240 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + LYG LS Q +AI P+G KVVL+TNIA+TSLTIEGI++V+D + V Sbjct: 241 RIKNTYISTLYGNLSKEAQDRAIKAPPKGTGKVVLSTNIAQTSLTIEGIKIVIDSGLQNV 300 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 + F+P +G+ +L ++ +S+ + QRAGRAGRL G + HL K + + PEIL + Sbjct: 301 SVFNPFSGMNKLESKFISKDAAIQRAGRAGRLSAGKAYHLWHKSRILQ--KHDTPEILSA 358 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 DLS L++EL QWG D +SW+D PP+ + A+ LL+ LGAL+ +++ G+ M + Sbjct: 359 DLSQLVLELAQWGNDDINALSWMDTPPITAIHHARALLKQLGALDSNGHITSHGEAMGSY 418 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEE----PPRMGNSDL--------GVAFSRNQ 462 G PRLA M++ AK D + A+ +A ++ E ++DL VA N Sbjct: 419 GLHPRLAHMMLKAKEMDLSYEASLLAVLVSEKDIYSSAYTSADLRERVITLHDVAQKANV 478 Query: 463 PAWQQRSQQLLKRL-NVRGGEAD--SSL----IAPLLAGAFADRIARRRGQD-GRYQLAN 514 + +Q L N R E + S+L + LLA A+ DRIA+ R ++ G Y L+N Sbjct: 479 SSKYVDIKQCRYLLENARRIEKNQTSTLHTEQLGILLAFAYPDRIAQLRHRNKGTYLLSN 538 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G GA L ++D L +L L + S DA I A+ + + ++ Q+ V Sbjct: 539 GKGAYLHSDDTLFNSPYLAISDL--DAKSTDAAIYKAIALSLADIETHLGTETQE--MVT 594 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 W++A+ +K + G+L +K L + E+ + +L+ I GL++L+W EA+ LR Sbjct: 595 WNEAEARVKVRKVECFGKLILKETQLKSTASPEVLEVLLDEIEALGLNILHWNKEAKNLR 654 Query: 635 LRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 R+ L + ++P DE+LL ++ WL P++ V +L+ ++LD++ L GLL + Sbjct: 655 ERVNFLH--LHDENFPDFSDENLLDTMDKWLAPYLQNVTTLKACRNLDLHNILLGLLSYE 712 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 Q+L+ +PA + V +GS+I I Y + P LAVR+QE+FG P I G+V L+L L Sbjct: 713 ELQKLNRLVPAKHKVASGSQIGIDYSDPQQPVLAVRLQELFGTHDTPAILGGKVKLMLHL 772 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LSPA RP+Q+TRDL FW+ Y EV+KE++GRY KH WPDDP T +TKK Sbjct: 773 LSPASRPMQVTRDLKSFWENTYDEVKKELRGRYKKHYWPDDPLEAKATSKTKK 825 >UniRef50_C1AEB6 ATP-dependent helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEB6_GEMAT Length = 849 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 358/848 (42%), Positives = 493/848 (58%), Gaps = 49/848 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 ++ LP+ + LPELL AL +L AP GAGK+T +PL LL + +I++LEPRRL Sbjct: 5 LTPLPIDSALPELLAALQQRAVAVLEAPPGAGKTTRVPLALLDTSWLGTQRIVMLEPRRL 64 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A +A E G TVGYR+R + V TR+EVVTEGVL R++ D L G G Sbjct: 65 AARAAATYMARQCGESVGGTVGYRVRGETRVSARTRIEVVTEGVLARLLSADATLDGYGA 124 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA----PVVI 175 VI DEFHERSL ADL LAL+L+ QQ LR +L++L+MSATLD D + ++ +A PVV Sbjct: 125 VIFDEFHERSLHADLGLALVLETQQQLRAELRVLVMSATLDGDAVAALIADAGGAAPVVR 184 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 S GR FPV + A +R + + E L+ G +L+FLPG GE +RV E+L Sbjct: 185 SAGRMFPVTTHHRASRADERVEATTSRVIREALQDTEGDVLVFLPGAGEQRRVAERLQG- 243 Query: 236 IGSD---VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 G D V + L+G++ L +Q A+ PAP G RKVVL+T+IAETSLT+EG+R+V+D Sbjct: 244 -GQDLARVHVHVLHGSMPLAEQDAALAPAPSGWRKVVLSTSIAETSLTVEGVRVVIDVGL 302 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R+ RFD GLTRL T RVS+AS QR GRAGR PG L + A + PEI Sbjct: 303 SRIPRFDAAAGLTRLHTVRVSRASADQRRGRAGRTAPGSCYRLWDVHEEHVMPAATRPEI 362 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 + +DLS L +EL G DP Q+ WLD P AA+ LL LGAL+ + R++ G++M Sbjct: 363 VDADLSSLALELADAGIGDPLQLRWLDAPKAAPFAAARALLTQLGALDAQGRITPHGKRM 422 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE----------PPRM------------ 449 A++ PRLA +L+ A E A IAA+LEE PP Sbjct: 423 ASMPLAPRLAHLLLMAATRGETMAGAAIAALLEERDVLRADGGRPPADLRLRTELLRRDG 482 Query: 450 -GNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG--GEADSSL------IAPLLAGAFADRI 500 G + G+ + +R++Q ++ L RG G D+ I LLA AF DR+ Sbjct: 483 DGGTSAGLFGASVDRDATRRARQSMQDLLRRGDFGAVDAKAPWSDDDIGALLALAFPDRV 542 Query: 501 ARRR-GQDGRYQLANGMGAMLDANDALSRHEWL-IAPLLLQGSASPDARILLALLVDIDE 558 A+RR G + RY + NG GA+L+ D L WL IA L Q P+ RI+ A + ++E Sbjct: 543 AQRRSGPEPRYLMRNGSGAILEKRDGLHDAPWLAIAELEGQ---PPEYRIVRAAPITLEE 599 Query: 559 LVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRD 618 + + + WDD +++A R +G L ++ +P + D + A++ ++ Sbjct: 600 ITADFSEQYVREPRAWWDDTTRSVRATLRTTLGALVLEEKPWRDVAADTVRAALITHLQR 659 Query: 619 KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 G+ W+ A +LR RL+ + + WP V D++LL +LE WL P + V + L Sbjct: 660 IGVDAWPWSDGATRLRERLMFLHR--QDVSWPDVSDDALLVSLEEWLGPFLENVRNWSQL 717 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 +SLD ++AL L+ W + LD P H VP+GSRIA+ YH+ P LAV++QE FG Sbjct: 718 ESLDWHEALASLVPWSQRAALDRLAPTHIEVPSGSRIAVDYHDTEAPVLAVKLQECFGWT 777 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN 798 T PT+ GRVPL + LLSPAQRP+Q+TRDL+ FWKG+Y EV+KE++GRYP+H WPDDP Sbjct: 778 TTPTLFDGRVPLTMHLLSPAQRPVQVTRDLAGFWKGSYFEVRKELRGRYPRHPWPDDPLT 837 Query: 799 TAPTRRTK 806 PTRR K Sbjct: 838 AVPTRRAK 845 >UniRef50_Q3A1P8 ATP-dependent helicase HrpB n=8 Tax=Desulfuromonadales RepID=Q3A1P8_PELCD Length = 844 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 357/849 (42%), Positives = 484/849 (57%), Gaps = 56/849 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 P+ ++L ++ AL +L A GAGK+T +PL LL P + G +I++LEPRRLA Sbjct: 6 GKFPIDSILGDVALALRSNQAAVLQAEPGAGKTTRVPLALLDEPWLAGQRILMLEPRRLA 65 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A N A+ +A L E+ G TVGY +R TRLEVVTEG+LTR +Q DP L GVGLV Sbjct: 66 ATNAARYMAGCLGEQVGATVGYAIRFDRRTSAATRLEVVTEGILTRRLQADPTLEGVGLV 125 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHER+L +DLALAL D Q GLR+DLKLL+MSATLD + + ++L +AP++ GR Sbjct: 126 IFDEFHERNLNSDLALALCRDAQLGLREDLKLLVMSATLDGEPVARLLGDAPLLRCPGRC 185 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR-IGSD 239 PVE YLP + VA A R+ G +L+FLPG GEI R ++ L + D Sbjct: 186 HPVEVTYLPREPQGPLAEVVARAVRRAARETEGDMLVFLPGAGEILRCRDLLLREPVVDD 245 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + LYG L +Q +A+ P P+ RKVVLATNIAETSLTIEG+R+V+D R +RFD Sbjct: 246 PQINVLYGDLPFAEQERALRPGPR--RKVVLATNIAETSLTIEGVRVVIDSGFMRQSRFD 303 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 +GL RL++ R++ A+ QRAGRAGRL PG L + + PEI +DL+ Sbjct: 304 AGSGLPRLVSVRITAANADQRAGRAGRLGPGRCYRLWTEATHGGLLPFAAPEIRSADLTL 363 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDP 418 L +EL +WG D + WLD PP L AA+ LL+ LGAL+ +RL+ GQ MA L P Sbjct: 364 LALELARWGVPDAMSLCWLDAPPAGALSAARALLRQLGALDARQRLTRLGQAMAELPAHP 423 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 R+AA+LV+ + + A A +AA+LEE DL N+ A LL+RL++ Sbjct: 424 RIAALLVAGRGNPLAPWACDLAALLEE------RDL---LRGNRRASHATDSDLLERLDI 474 Query: 479 -----------RGGEA----------------------------DSSLIAPLLAGAFADR 499 G +A D+ I LL A+ DR Sbjct: 475 LQAWRTKASLPEGVDASACRTVDRAARAWRRRSRLEQGAQTAMPDADSIGGLLLAAYPDR 534 Query: 500 IARRRG-QDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDE 558 +AR+R RY LANG G L L E+L+A + + G + DA I A V + Sbjct: 535 LARQREVGSKRYVLANGQGGCLSPRSGLRGTEYLVA-VHVSGGRTGDAFIHQASSVGLAS 593 Query: 559 LVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRD 618 + + + V WD AQ + A +G L + +P+ + S DE+HQA+L GIR Sbjct: 594 IESFYAERLGWQRRVFWDAAQQRIVAREERSLGALLLASRPV-EASGDEMHQALLEGIRQ 652 Query: 619 KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 GL L W EA QL+ R+ A+ E WP + D++L +L WL P + G+ L Sbjct: 653 LGLDALPWEDEARQLQYRVAVMAEAYAEQSWPDLSDDALRESLAEWLSPFVAGMRRAADL 712 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 K LD+ + LR LDW + LD+E+P H VP+G R+ + Y ++ PP LAV++QE+FG A Sbjct: 713 KRLDLVEVLRSRLDWSHLRLLDTEVPTHLAVPSGHRVRLTYQQNGPPILAVKLQELFGLA 772 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN 798 P++A GRV + L LLSPA+RPL +T+DL FW Y EV++EM GRYPKH WPDDP Sbjct: 773 DTPSVAGGRVAVQLHLLSPARRPLAVTQDLRHFWDHVYPEVRREMAGRYPKHPWPDDPWR 832 Query: 799 TAPTRRTKK 807 PTR TK+ Sbjct: 833 AIPTRSTKR 841 >UniRef50_C7LWJ1 ATP-dependent helicase HrpB n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWJ1_DESBD Length = 822 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 355/820 (43%), Positives = 493/820 (60%), Gaps = 26/820 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 M LP+ A+LPEL L L+ AP G+GK+T +PL LLA + KI++LEPRRL Sbjct: 11 MPPLPIDAILPELADTLTTGAACLVHAPPGSGKTTRIPLALLASAWLGKNKILMLEPRRL 70 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+ +A LL EK G VGYR R V TR+EVVTEG+LTRM+Q DPELSG Sbjct: 71 AARAAARHMAGLLGEKAGARVGYRTRLDIRVSSATRIEVVTEGILTRMLQHDPELSGYAC 130 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE+HERSLQADL LAL L+V+ LR DL+L++MSATLD + ++ +V G+ Sbjct: 131 VIFDEYHERSLQADLGLALCLEVRAALRPDLRLIVMSATLDAKAVADLIAPCRIVECPGQ 190 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 VE RYL + + + ++ +A A L E GS+L FLPG EI+R E L G+ Sbjct: 191 PHAVETRYLRV-SGRFLEERMAFAIRHALTTEHGSILAFLPGAREIRRTAELLGPP-GAG 248 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V + PL GAL+ +Q KAI P G RK+VL T IAETSLTIEG+R+V+D R+ RFD Sbjct: 249 VEIHPLLGALTATEQDKAIAPPAPGTRKIVLTTAIAETSLTIEGVRIVIDSGLSRLPRFD 308 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P++ +T L+T+ + A++TQR GRAGR EPGI + + PE+L++DL+ Sbjct: 309 PKSSMTVLVTEPAALATVTQRRGRAGRTEPGICFRIWDQTDEISRKPYPAPEMLEADLAP 368 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 L+++L WG +DPA +SWL PP + +A RLLQ L AL+ + R++ G++MA L P Sbjct: 369 LVLDLALWGTTDPATLSWLTPPPPGHFNSALRLLQSLEALDDQGRITPHGREMALLPLHP 428 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRS------- 469 RL M++SA+ TAA +AAIL EP R G+SDL + R P+ R Sbjct: 429 RLGHMVLSARKHGLGPTAAALAAILGEPGRSMRGSSDLRDSL-RIHPSTLSRKDTLRASM 487 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRH 529 +Q+ + ++ + D L A A+ DRIARR+ +DG Y+L +G A+ L+ H Sbjct: 488 EQIARLASINLEQPDPEAAGILTALAYPDRIARRQ-EDGSYRLTSGRKAVWPGPSTLAGH 546 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 E+L A L G A+ A+I + + DEL Q ++ D V +D + + + R++ Sbjct: 547 EFL-AIADLDGDAA-GAKIWQSAPLSWDELQTHFRQQFRKEDEVRFDPLKDRVVSLRKIM 604 Query: 590 IGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD- 648 + L ++ + L E + A+L G +D L+ LNW+ E + LR R+ ++L D Sbjct: 605 LDTLCMREEKLGTDPE-TVTSALLRGQKD--LARLNWSEECKNLRDRI----RFLRSLDP 657 Query: 649 -WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHY 707 WP + D++LL ++ WL P TG S L +++ QAL+ L+ W + LD + P Sbjct: 658 AWPDMSDQALLESINEWLAPFATGARSQADLGKINLLQALKALVGWDKMRELDRQAPEFM 717 Query: 708 TVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRD 767 TVPTG+ I Y ++ PAL V++QEMFG AT PT+A G LVL LLSPA RPLQ+TRD Sbjct: 718 TVPTGAHRRIDYSPESGPALPVKLQEMFGCATTPTLADGGYALVLHLLSPAGRPLQVTRD 777 Query: 768 LSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 L FWK AY V+ EM+GRYPKH WP+DPA PT +TKK Sbjct: 778 LPSFWKNAYPLVRAEMRGRYPKHPWPEDPATAMPTAKTKK 817 >UniRef50_Q72BU1 ATP-dependent helicase HrpB n=3 Tax=Desulfovibrio vulgaris RepID=Q72BU1_DESVH Length = 847 Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust. Identities = 354/833 (42%), Positives = 487/833 (58%), Gaps = 36/833 (4%) Query: 6 VAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAARNV 64 + + LP L AL A + + AP GAGK+T +PL LL P + + I++LEPRRLAAR Sbjct: 16 LVSALPRLTDALLSAGRCVFVAPPGAGKTTVVPLHLLDAPWLRSRRIVMLEPRRLAARAA 75 Query: 65 AQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDE 124 A+ +A LL E+ G+TVGYRMR + VGP TR+EVVTEGVL RM+ DP L GLVI DE Sbjct: 76 ARFMARLLGEQVGETVGYRMRLDSRVGPRTRMEVVTEGVLGRMLHDDPTLEEYGLVIFDE 135 Query: 125 FHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVE 184 +HERSLQADL LAL LDV LRDDL+LL MSATLD L ++ PV+ EGR +PVE Sbjct: 136 YHERSLQADLGLALCLDVADALRDDLRLLAMSATLDAAPLGSLMGGCPVIECEGRQWPVE 195 Query: 185 RRYLPLPAHQ-----RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 RY P P ++ F+D VA L + G +L+FLPG GEI+R +L Sbjct: 196 VRYAP-PVNRAGYPSSFEDNVAACVHRALAETEGDVLVFLPGGGEIRRTARRLEGLDAHG 254 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V + LYG L+ Q A+ P G RKVVLAT +AETSLTIEG+R+VVD R +RFD Sbjct: 255 VGVHMLYGDLAPALQDAALAPDVSGARKVVLATALAETSLTIEGVRVVVDGGLARFSRFD 314 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P++G++RL+T+R+S A TQR GRAGR PG+ L + + + PE+L +DL+ Sbjct: 315 PQSGMSRLVTERISLAGATQRVGRAGRTGPGVCYRLWHEGETASLRPFARPEVLDADLAP 374 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 L+++L WG DP+++ WLD PP VN+ A+ LLQ LGA++ R++ G+ M AL P Sbjct: 375 LMLQLSAWGVLDPSKLRWLDAPPEVNVNQARILLQSLGAIDASGRITGHGKSMNALPLHP 434 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEE---PPRMGNSDL------GVAFSRNQP------ 463 RLA M++SA A+ A +A +LE+ RM D+ V R++P Sbjct: 435 RLAHMVLSACRSGSASLACVLACLLEQRGVAERMPGCDIRPSVEDAVRRMRHKPRGASRE 494 Query: 464 AWQQRSQQLLKRLNVRGGE--------ADSSLIAPLLAGAFADRIARRRGQDGRYQLANG 515 W+ R + R+ G +D + LL AF DR+A G+ G ++L+ G Sbjct: 495 GWEVRLASSVDRIAALAGVRLDAGRALSDVARCGVLLGFAFPDRVAMNTGE-GTFRLSCG 553 Query: 516 MGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEW 575 GA + A+DAL+R +L+A L G + ARI A + +E+ + + V W Sbjct: 554 RGAAVPADDALAREPFLVAA-ELDGDVT-RARIWRAAPLAAEEVAMLAGGAITEQREVGW 611 Query: 576 DDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRL 635 DD QG A + G L ++ + + + L A++ GIR +GL L WT E Q + Sbjct: 612 DDRQGVAVAHVERRFGALVLERRRIDDVDDTLLAHAVMRGIRTRGLRCLPWTQELRQWQA 671 Query: 636 RL-LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 R+ L P WP V D L A LE WL+P ++G+ +D+ AL+ LL W Sbjct: 672 RVELMRRHDTPGGQWPEVADTRLEAELEEWLIPFLSGIRRAEHFARIDLQSALKNLLSWE 731 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 +RLD+E P H VP+GSR+ + Y + P LAV++QE+FG A +P +A V +V+ L Sbjct: 732 QARRLDAEAPTHVVVPSGSRVPLDYTAEGGPVLAVKLQELFGMAESPVVAG-GVSVVVHL 790 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LSPA RPLQ+TRDL+ FW+ Y V+ EM+GRYPKH WP+DP TR T+K Sbjct: 791 LSPAGRPLQVTRDLAGFWRTGYASVRAEMRGRYPKHPWPEDPLTAMATRHTRK 843 >UniRef50_C5BNR7 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=C5BNR7_TERTT Length = 854 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 359/840 (42%), Positives = 494/840 (58%), Gaps = 43/840 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+A +L EL L Q++L AP GAGK+T +PL L + G KI++LEPRR+AA+ Sbjct: 14 LPIATLLDELALTLQHHHQLVLDAPPGAGKTTLVPLALRTAEWLRGRKIVMLEPRRVAAK 73 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A R+AELL E G T+GY MR + +T +EVVTEG+LTR +Q+DP L LVI Sbjct: 74 AAAVRMAELLEEPVGKTIGYTMRLEQKCSRDTIIEVVTEGILTRRLQQDPSLDDTALVIF 133 Query: 123 DEFHERSLQADLALALLLDVQQGLRDD---LKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 DEFHERS+ +DL LAL + ++ LRDD LKLL+MSATLD + +L AP + S GR Sbjct: 134 DEFHERSMHSDLGLALCMQSRELLRDDTDPLKLLVMSATLDAQAIADLLGGAPKLTSAGR 193 Query: 180 SFPVERRYL-PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 SFPVE Y P+ +A + L + SG L+FLPG EI +++ L+ + + Sbjct: 194 SFPVEVTYAQHTPSRADLVSILATTVVQALNKHSGDCLVFLPGQREIHQLKAALSESLSN 253 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQG---MRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 +V + PLYG+LSL +Q+KAI P RKVVLAT+IAETSLTI+G+ +VVD R Sbjct: 254 EVAVMPLYGSLSLAEQQKAISPLTTDQIKTRKVVLATDIAETSLTIDGVHIVVDSGLARK 313 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +FDPRTG+TRL T +S AS QRAGRAGRL PG + + AAQ+ PEILQS Sbjct: 314 PKFDPRTGMTRLHTGPISIASSIQRAGRAGRLAPGNCYRCWTETAQHQRAAQATPEILQS 373 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER---LSAQGQKMA 412 DL+ L M+LLQWG +DP Q+ WLD+PP A LL L A++ L+ GQ MA Sbjct: 374 DLAPLAMQLLQWGVNDPQQLQWLDEPPKPAFQQACDLLFRLKAIDTPTACVLNEHGQAMA 433 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP-PRMG-NSDL-----GVAFSRNQP-- 463 L PRLA +L+ A AA +AAIL E P +G ++DL V R+ P Sbjct: 434 MLPLHPRLAHLLLVATEFGRLPLAASVAAILSEAIPDIGQHTDLMFVVETVEGRRSLPSQ 493 Query: 464 --AWQQRSQQ---LLKRLNVRGGEADSS-----LIAPLLAGAFADRIARRRGQD-GRYQL 512 AW QR +Q LL L EA+S+ + L+A A+ DRIAR+R Q RY L Sbjct: 494 HRAWLQRIRQQRGLLLSLLSHNREANSTDEDLNALGLLIASAYPDRIARKRTQSRNRYLL 553 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 ANG A L ND+L+ EWL + + + RI A + ++L Q Sbjct: 554 ANGRAAQLSPNDSLAGTEWLAIADIGGVTNQSEDRIFAAASLTKEDLNSGLAAQKTQERV 613 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 +EW + + + A +++IG + V+ + + + ++ A LN IR +GL VL W ++ Q Sbjct: 614 IEWRENR--VLAQDQVRIGAILVEQRAASNVTAEDRTAATLNYIRLQGLGVLPWNSDINQ 671 Query: 633 LRLRLLCAAKWLPEYD-----WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQAL 687 R R+ + E D WP + DE+L+ ++ WL P++ + +L+ LK LD+ + Sbjct: 672 WRARVAL----VRENDNSSALWPDLSDEALMETIDNWLAPYLIDIDNLQSLKRLDLASIV 727 Query: 688 RGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGR 747 L W QQ L+ P VP+G+ I+I Y + +PP L V++QEMFG P+I G+ Sbjct: 728 HAQLPWSQQQLLEQLAPTRIKVPSGNHISINYLQ-SPPQLEVKLQEMFGCEETPSIINGK 786 Query: 748 VPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 V L++ LLSPA+RPLQIT+DL+ FW+ Y V+KEMKGRYPKH WPDDP + T+ TK+ Sbjct: 787 VALLIHLLSPARRPLQITQDLAGFWRNGYEAVKKEMKGRYPKHPWPDDPLSAQATQLTKR 846 >UniRef50_C5S692 ATP-dependent helicase HrpB n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S692_CHRVI Length = 856 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 353/840 (42%), Positives = 499/840 (59%), Gaps = 47/840 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 + LP+ +L +L AL VL APTG+GKST +PL LL P + G +I++L+PRR Sbjct: 4 LDPLPIDVILDDLRAALRQGHGVL-HAPTGSGKSTGVPLALLDEPWLTGQRILMLQPRRP 62 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A R+A+ L E G+ VGY++R + +GP TR+EVVTEG+LTR +Q DP L GVGL Sbjct: 63 AARMTAARMADRLGEPLGEQVGYQIRFERRIGPRTRIEVVTEGILTRRLQSDPTLDGVGL 122 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHER L +DL LAL LD +GLR DL+LL+MSATL+ + + ++L AP++ +EGR Sbjct: 123 VIFDEFHERGLPSDLGLALTLDSARGLRPDLRLLVMSATLEAEPVAELLGGAPILRAEGR 182 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 SFPVE RY A+ + L E+G +L FLPG EI+R +E L +++GS+ Sbjct: 183 SFPVEIRYAERTPDSDPVRALVAGARQALADETGDILAFLPGAREIERAREALGAQVGSE 242 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V + PL+GALS +Q +A+ P G R+++LAT++AETSLTIEG+R+V+D R RFD Sbjct: 243 VEILPLHGALSSAEQDRALRPDGSGRRRLILATDLAETSLTIEGVRVVLDSGLTRKPRFD 302 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +GLTRL+T+ + +AS QRAGRAGRL PG+ L + Q + PEIL+SDL+ Sbjct: 303 PGSGLTRLVTESIPRASADQRAGRAGRLAPGVCRRLWTRAQEVGRPDRRTPEILESDLAP 362 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDP 418 L +EL WG DPA++SWLD PP A LL+ LGAL+ + ++ G+ +A L P Sbjct: 363 LALELALWGVKDPAELSWLDPPPAPAWNQALELLRTLGALDRRDSITPLGRALAELPVHP 422 Query: 419 RLAAMLVSAKNDDEAATAAKIAAI-------LEEPPRMGNSDLGVAFS--------RNQP 463 RL ML+ A +E TAA + A+ L EP R +DLG+ R P Sbjct: 423 RLGVMLLGAAP-EERQTAADLCALISERDPFLPEPGRARPADLGLRLEALRAARERRGTP 481 Query: 464 AWQQR---------SQQLLKRLNVRGGE---ADSSL---IAP---------LLAGAFADR 499 A +R ++QLL RL R E A +SL ++P LLA A+ DR Sbjct: 482 AGVERRRLEAIERAARQLL-RLAERAAETAPAPASLDQALSPTRLQRVPGALLALAYPDR 540 Query: 500 IARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDE 558 +A+RR G D RY LA G GA L +DAL+ H +L+ + + D RI AL + DE Sbjct: 541 VAQRRAGADERYLLATGTGAELPRDDALAIHPYLVVAAI--DARGRDGRIQSALPISEDE 598 Query: 559 LVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRD 618 L + ++ V WDD + + ++G + ++ +P+A ED+ +L IR+ Sbjct: 599 LRTELAECLESRREVFWDDERAAVACRAITRMGSIVLESRPVALGPEDDAGTYLLAHIRE 658 Query: 619 KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 L+W+ A QL+ R+ A ++ P DWP + D +L L+ WL P +TG L + Sbjct: 659 HFGDALDWSDSARQLQARVALARRYDPAGDWPDLSDTALREQLDDWLAPWITGKSRLSDV 718 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 + LD+ L L W +Q LD ++P + P G+ I Y P LA +QE FG + Sbjct: 719 RRLDLSAILLDRLSWEQRQWLDQQVPRTFVTPAGNNRPIDYVSGETPILAAPLQEFFGLS 778 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN 798 P + +GRVP++L LLSPA+RP+Q+T+DL+ FW Y EV+KE++GRYPKH WP+DP Sbjct: 779 DTPRLCRGRVPVLLHLLSPARRPMQVTQDLAGFWARGYAEVRKELRGRYPKHHWPEDPTQ 838 >UniRef50_Q0EYD3 ATP-dependent helicase HrpB n=2 Tax=Proteobacteria RepID=Q0EYD3_9PROT Length = 861 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 335/860 (38%), Positives = 492/860 (57%), Gaps = 57/860 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M LP+ VLPE+ L +++L AP GAGK+T +P+ LL + + II+LEPRRL Sbjct: 1 MPLLPIHDVLPEIKEKLTTHNRLVLQAPPGAGKTTAVPIALLGEGWLGDRQIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AARN A R+A LL EK G+TVGY++R +CV T++ VVTEG+LTR +Q DPEL+ L Sbjct: 61 AARNAAARMAFLLGEKVGETVGYQIRQDSCVSDKTKILVVTEGILTRKLQADPELTNTAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL+LAL L QQ LR+DLK+L+MSATL D + +L AP++ SEGR Sbjct: 121 VIFDEFHERSLHADLSLALCLQSQQILREDLKILVMSATLHTDAVASLLHHAPIIESEGR 180 Query: 180 SFPVERRYLPLPAHQRFDDA-------VAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 SFPVE RYL QR + + + + G+ L+FLPGV EI ++ Q+ Sbjct: 181 SFPVENRYLDHAIRQRNSNPQQQLMIDLTNTVNTFIHEHEGNCLVFLPGVKEINQLARQI 240 Query: 233 ASRIGSD----VLLCPLYGALSLNDQRKAI-LPAPQGMRKVVLATNIAETSLTIEGIRLV 287 + + +++ PL+G+L Q AI PA +GMRK+VLATNIAETS+TIEGI V Sbjct: 241 KQLLDRESIRHIVIAPLHGSLKKQQQDLAIAAPADKGMRKIVLATNIAETSITIEGISCV 300 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ 347 +D ERV + P +G+ RL T+ +SQ S QR+GRAGRL G + + Q R Sbjct: 301 IDSGLERVLDYSPASGMNRLTTRAISQDSAVQRSGRAGRLSAGTCYRMWSATQQSRLLKH 360 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSA 406 + PEIL SDL+ L++EL WG +D ++ W+D PP + AK LLQ LGA++G ++A Sbjct: 361 ASPEILHSDLTSLVLELANWGVTDVNELQWMDLPPHGAIEQAKTLLQQLGAIDGLGTITA 420 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSD--------LGVA 457 G+ M LG PRLA M+++A ++A A IA++L E + N+D L V Sbjct: 421 HGRDMLRLGTHPRLAHMMLAAVKLNQAYHACLIASLLSEKDIFLANADKSADIHDRLNVL 480 Query: 458 F---SRNQPAWQQRSQQLLK-------------RLNVRGGEADSSLIAPLLAGAFADRIA 501 S + Q+ +++++ + + D LLA A+ DRIA Sbjct: 481 LHGKSNHHGIDHQQCKRIMQSADDFFRRVKQCSKAGLNKERPDHHYSGVLLAYAYPDRIA 540 Query: 502 RRRG-QDGRYQLANGMGAMLDANDALSRHEWLIAPLL--LQGSASPDARILLALLVDIDE 558 +RR + RY L+NG GA++ HE+L+ L QG AS I LA + ++ Sbjct: 541 KRRNPNEARYLLSNGKGAVIPPYIQHHLHEYLVVANLDARQGEAS----IYLAADISAEQ 596 Query: 559 LVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKP-SEDELHQAMLNGIR 617 L +++Q + VEW+D ++ + +IG++ ++ + S + + Q +L IR Sbjct: 597 LQTCFSGIIEQEERVEWNDEAQRVEVKQVSRIGKIMLQESTVHHSDSREAVQQCLLQAIR 656 Query: 618 DKGLSVLNWTAEAEQLRLRL----------LCAAKWLPEYDWPAVDDESLLAALETWLLP 667 ++G+ LNW+++A L+ R+ E P +++L LE WL P Sbjct: 657 EQGVGCLNWSSKARSLQQRVQFIHHHLDKSAAVKNMFAEQPLPDFSEQALSDRLEDWLQP 716 Query: 668 HMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPAL 727 H+ +SL+ +LD++ L L W QQ + P +VP+GS + I Y + P L Sbjct: 717 HLNHENSLKQCFNLDLHSLLLNQLSWQQQQLIKQLAPERISVPSGSAVTIDYSDPEQPVL 776 Query: 728 AVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRY 787 AVR+QE+FG PT+ G L + LLSPA++P+Q+T+DL+ FW+ Y +V+KE++G+Y Sbjct: 777 AVRLQEVFGLFDTPTLLNGACKLTMHLLSPARKPMQVTQDLNSFWQTTYHDVKKELRGKY 836 Query: 788 PKHVWPDDPANTAPTRRTKK 807 +H WPDDP T +TKK Sbjct: 837 KRHYWPDDPFTAEATSKTKK 856 >UniRef50_Q47W70 ATP-dependent helicase HrpB n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47W70_COLP3 Length = 845 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 336/842 (39%), Positives = 481/842 (57%), Gaps = 41/842 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 + LP+ A+ + +LD ++LSAP GAGKST LPL LL P + N KI LL+PRRLA Sbjct: 7 TYLPIEAIKQQFCQSLDEQNTLILSAPPGAGKSTCLPLWLLTLPSLANKKIYLLQPRRLA 66 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 +N+A LA L EK G+TVGYR+R + +TRLEV+TEG+LT++IQ+D EL G LV Sbjct: 67 VKNIATFLAAQLKEKVGETVGYRLRNDSKTSTSTRLEVITEGILTQIIQKDAELLGTALV 126 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSLQ DLA AL +VQ LRDDLK+L+MSATLD + L Q LP+A ++ SEGRS Sbjct: 127 VFDEFHERSLQGDLAFALTREVQTELRDDLKILLMSATLDIEYLSQALPDAYLLNSEGRS 186 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +P+E Y AHQR+ + + + GS+L+FLPGV +I+ + + L ++ V Sbjct: 187 YPIEVSYQAPRAHQRWREHALAVIKDKMYNHIGSILVFLPGVADIRFLLDSLMAQKVEGV 246 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 +CPL+G LSL +Q++AI P G RK+VLATNIAETSLTI+GI LV+DC E+VA FD Sbjct: 247 KICPLFGELSLKEQQQAIAPCLSGHRKIVLATNIAETSLTIDGIDLVIDCGLEKVAVFDS 306 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 + + +L+ +++S+AS QRAGRAGRL G + L K+ ER S +I Q+DL Sbjct: 307 ASLMNKLMQKQISKASAVQRAGRAGRLMHGQCIRLYGKDDFERRPLHSVNDIQQADLLPT 366 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPR 419 L+E +WG + A++ L+ P A + LQ L ++ + L+ G+K + L PR Sbjct: 367 LIEAARWGVTALAELPLLELPSKAKEQQAWQELQSLDIVDDKYLLTKHGEKASCLPCHPR 426 Query: 420 LAAMLVSAKNDDEAATAAKIAA--------ILEEPPRMGNSDLGVAFSRNQPAWQQRSQQ 471 A M++ A+ T IL+ + DL R Q Q +S + Sbjct: 427 FAHMILMAQTQGPNITLLACLIAALLEERDILKGEQAKYDCDL---IHRLQLLIQHKSNK 483 Query: 472 --LLKR-------------LNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM 516 LL+R L R + D + LLA A+ +R+A+ RG G + NG Sbjct: 484 NPLLERILQQASRLAQNVQLRFRVHDLDLAKTGVLLAYAYPERVAKTRGNHGDFICVNGK 543 Query: 517 GAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWD 576 G +++ DAL+ ++++ Q R LA + ++E+ ++Q D +D Sbjct: 544 GTLVNEQDALAGEDFIVIAQTSQLGGQLTVR--LASQISLEEITNTFAAQIKQQDIANFD 601 Query: 577 DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAM-LNGIRDKGLSVLNWTAEAEQLRL 635 + G + A R+ +G + + QPL + E AM + + KGLS L+W A+ L+ Sbjct: 602 NKSGRIIAKRQTSLGAIVLSDQPLKQEVTAESISAMWCSLVMKKGLSFLSWQAKDLALKA 661 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGM 695 R L K+ PEYD +DDE LLA L TW P + G+ + L LD+ L LL + Sbjct: 662 RWLWLNKYFPEYDLVVIDDELLLAKLTTWFAPFVGGIKTKAQLDKLDLSSMLLSLLSYQE 721 Query: 696 QQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA---------QG 746 Q+ L P Y PTG I Y +D P +++ MQE++G P + QG Sbjct: 722 QKILKQAAPTVYVGPTGRHCPISYSQDESPKVSLPMQELYGLTITPNVGAIAGISEQNQG 781 Query: 747 RVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 +PL+LELLSPAQRP+Q+T+DL FW G+Y+ VQK+MK RYP+H WPDDP N T + K Sbjct: 782 -IPLLLELLSPAQRPIQVTQDLVKFWSGSYQAVQKDMKSRYPRHYWPDDPVNAKATNKMK 840 Query: 807 KY 808 ++ Sbjct: 841 RH 842 >UniRef50_C0QI12 HrpB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI12_DESAH Length = 844 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 346/842 (41%), Positives = 492/842 (58%), Gaps = 39/842 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAAR 62 LP+ V+PE+ AL +V++ AP GAGK+T +PL LL P + + I++LEPRR+AAR Sbjct: 6 LPIDRVMPEIKAALMTNQRVIIKAPPGAGKTTRVPLALLDEPWLGHRNILVLEPRRIAAR 65 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A R+++LL+E G TVGY + V P TR+EV+TEG+LTR IQ DP L G GLVI Sbjct: 66 AAASRMSDLLHEPLGQTVGYHISMDRKVSPKTRIEVITEGILTRRIQSDPGLLGTGLVIF 125 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER+L +DL LAL LD +DLK+++MSATL+ L +++ A VV S+G+ FP Sbjct: 126 DEFHERNLSSDLGLALCLDAMGAFCEDLKIVVMSATLEAAPLCELMGRAGVVESQGKIFP 185 Query: 183 VERRYL-PLPAHQRFDDAVAVATAEM----LRQESGSLLLFLPGVGEIQRVQEQLA-SRI 236 V+ RYL P P ++ D+ + V A + L ++ G +L FLPGVGEI+R L S++ Sbjct: 186 VDTRYLEPGPGAKK-DEFLEVRMARVILNALARDRGDILAFLPGVGEIRRTAALLNPSKL 244 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + V + PL+G L+ DQ +AI A G RKVVLAT IAETSLTIEG+ +VVD R Sbjct: 245 SACVSVLPLHGNLTQKDQDRAIQAARAGQRKVVLATAIAETSLTIEGVHVVVDSGLVREP 304 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 RF PRTG++ L T S+AS+ QR GRAGR PGI L +++ PEI +D Sbjct: 305 RFSPRTGMSALETFDASKASVDQRRGRAGRTGPGICYRLWSRQTQGDRTENVRPEIFNTD 364 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALG 415 L+GL +EL WG DP ++ WLDQPP + A+ LL LGAL+ + R+ A G+ +A LG Sbjct: 365 LAGLALELALWGVRDPGELKWLDQPPKAAMDQARTLLVRLGALDAQGRIKAHGRALAGLG 424 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD--------LGVAFSRNQP-AWQ 466 PRL ML++ K A A +AAI++EP M ++ L V + P + + Sbjct: 425 VHPRLGHMLLTGKAMGMGALACLVAAIVQEPDFMVRTNNAWDADLRLRVELLVSDPRSIR 484 Query: 467 QRS-------------QQLLKRLNVRGGEADSSLIAPLLAGAFADRIA-RRRGQDGRYQL 512 RS +L L V+ D + LLA A+ +R+A R +DGR+ L Sbjct: 485 DRSLKGGTLARVRKIAGKLRHTLGVKDESVDPNRAGNLLALAYPERVAMNRNSRDGRFLL 544 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 A+G G +L D L+ E ++A + + +A+I +A + EL Q Q +Q D Sbjct: 545 ASGRGGILPKADPLAWEEMIVAAHV--DGKNTNAKIFMAAPISRTELEQTFEQNIQVVDR 602 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 V WD + +KA + L + L P+ + + +L GIRD+G+ +L WT + Sbjct: 603 VFWDASAKAVKAVKERCYMGLVLSSHALENPNPELILSGLLQGIRDQGVGILAWTPGLRR 662 Query: 633 LRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 + R + + L + +P + D+ L +LE W +P M S+ +K +D+ L LL Sbjct: 663 FQARAVFLNRILGDEGFPDLSDKVLEESLERWFVPFMGTALSMSRVKRMDLKVPLLSLLT 722 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHED-----NPPALAVRMQEMFGEATNPTIAQGR 747 G + L+ P+H VP+GS+I + Y E + P L VR+QEMF T PT+A GR Sbjct: 723 HGEHRLLERHAPSHLLVPSGSKILLDYGEQASGCIDSPVLRVRIQEMFACTTTPTVAMGR 782 Query: 748 VPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 VP+ + LLSPAQRP+Q+T+DL+ FW Y +V+KE+KGRYPKH WPDDP + TRRT + Sbjct: 783 VPVTIHLLSPAQRPVQVTQDLASFWDNTYAQVKKELKGRYPKHFWPDDPRSAPATRRTMR 842 Query: 808 YS 809 S Sbjct: 843 NS 844 >UniRef50_B8DNU5 ATP-dependent helicase HrpB n=2 Tax=Proteobacteria RepID=B8DNU5_DESVM Length = 917 Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust. Identities = 380/893 (42%), Positives = 503/893 (56%), Gaps = 89/893 (9%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LPV A+LP LL L + +L AP GAGK+T +PL LLA P + G K++LLEPRRL Sbjct: 1 MPRLPVDAILPRLLGVLVDGARAVLQAPPGAGKTTRVPLALLAAPWLAGRKVVLLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A L E GDTVGYRMR VGP TR+EVVTEGVLTRM+Q DPEL+ VG Sbjct: 61 AARAAARRMAATLGEAVGDTVGYRMRLDTRVGPRTRVEVVTEGVLTRMLQADPELADVGC 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL LAL LD Q+GLR DL+L++MSATLD + +L PV+ S GR Sbjct: 121 VIFDEFHERSLHADLGLALCLDCQEGLRPDLRLVVMSATLDCGPVVALLGGCPVIESAGR 180 Query: 180 SFPVERRYLP-----LPAHQR----FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 +FPV+ R+LP LP +DAVA A L + GSLL+FLPG GEI+R E Sbjct: 181 AFPVDTRHLPPVRNWLPYETTPPGVLEDAVADAVRRALHETPGSLLVFLPGAGEIRRTAE 240 Query: 231 QLASRIGSD---VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLV 287 +LA + V + LYG L+ Q AI PAP G RKVVLAT IAETSLTI+G+R+V Sbjct: 241 RLAGLSATPHGPVAVHALYGDLAPELQDAAIAPAPPGTRKVVLATAIAETSLTIDGVRVV 300 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ 347 +D RV RFDPR+G++RL+T+RVS A QR GRAGR EPG L + + Sbjct: 301 IDAGLARVPRFDPRSGMSRLVTERVSLAGADQRRGRAGRTEPGTCWRLWREGEEAALRPF 360 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSA 406 + PEIL +DL+ LL+EL WG D + + WLD+PP NL A+ LL +LGAL+G R++ Sbjct: 361 ARPEILDADLAPLLLELALWGVPDASALRWLDEPPQANLAQARELLILLGALDGAGRITP 420 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP------------------- 447 G+++A L PRLA M+V A+ ATA +AA+LEE Sbjct: 421 HGRRVAVLPLHPRLAHMVVRAEELGLGATACCVAALLEERDPLRDAGADLRLRVALLAGD 480 Query: 448 --RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEA---------DSSLIAPLLAGAF 496 R GN+ G R + A +Q ++ ++ G+ D +LA A+ Sbjct: 481 GRRTGNAGGGPMVVRLREAARQVARLAGVDIDAAAGKGKGAHPGTRPDPEATGEVLALAY 540 Query: 497 ADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDI 556 DR+A RGQ G+++LA G GA L D LSR E +A + G A+ RI + Sbjct: 541 PDRVAEGRGQ-GQFRLACGRGAYLPPEDPLSR-EAFLAVGDMDGDAA-RGRIRRCAPLAR 597 Query: 557 DELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGI 616 + + + + + V WD + A R+ ++G L + P +E+ A++ GI Sbjct: 598 EHIEEAFGASIAEGAFVVWDARTEAVAARRQRRLGALVLDDAPHDAADPEEVTAAVVAGI 657 Query: 617 RDKGLSVLNWTAEAEQLRLRL----------------------------LCAAKWLPEYD 648 R GL L WT E EQ R R+ C + + Sbjct: 658 RSIGLHCLPWTPELEQWRARVALLRGLDAGGTGRAAEGSQPMPPRPDKSACPVESACRVE 717 Query: 649 --------------WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 WP V + +LLA LE WL P+++G+ +D+ AL LL W Sbjct: 718 SAGPDESACQGDSIWPDVSEGALLAGLEHWLAPYLSGITRRAQFARIDLAGALAALLPWE 777 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 + +RLD+E P VP+GS++ + Y + P LAV++QEMFG P +A GRVPLV+ L Sbjct: 778 LTRRLDAEAPERIEVPSGSQVLVDYAAEGGPVLAVKLQEMFGAGETPRVAGGRVPLVVHL 837 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LSPA RPLQ+TRDL+ FW+ Y V+ EM+GRYPKH WP+DP PTR T + Sbjct: 838 LSPAGRPLQVTRDLAGFWRTGYPAVRAEMRGRYPKHPWPEDPLAAPPTRLTTR 890 >UniRef50_A0L6K8 ATP-dependent helicase HrpB n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6K8_MAGSM Length = 829 Score = 537 bits (1384), Expect = e-151, Method: Compositional matrix adjust. Identities = 370/832 (44%), Positives = 492/832 (59%), Gaps = 35/832 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+ A L L AL P V+LSAP G+GK+T +PL LL P + G +I++LEPRRLAAR Sbjct: 7 LPIVATLQPLQAALLRHPNVILSAPPGSGKTTVVPLALLDAPWLAGERILMLEPRRLAAR 66 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A R+AELL E G+ VGY++R + VGPNTR+EVVTEG+LTR +Q DP L GVG ++ Sbjct: 67 AAASRMAELLQEPVGERVGYQIRFERKVGPNTRVEVVTEGMLTRRLQSDPALQGVGAILF 126 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERSLQ DL LAL L++QQ LRDDL+LL+MSATL++ RL ++L +AP++ GRS+P Sbjct: 127 DEFHERSLQGDLGLALALELQQ-LRDDLRLLVMSATLESQRLAKLLGDAPIIEGHGRSYP 185 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V+ RY P + + V + L QE G LL FLPG GEI+RV+ L S + DV L Sbjct: 186 VQVRYASQP-YAHVVEGVVQTIRQALAQERGDLLAFLPGAGEIRRVEAALRSGLPDDVTL 244 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYG L + Q +A+ P +G R+V+LAT+IAETSLTI GIR+VVD + RF + Sbjct: 245 LPLYGELGMQAQDRAVRPWLEGGRRVILATDIAETSLTIPGIRVVVDGGLCKRPRFHASS 304 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GLTRL R+S AS QRAGRAGRLEPG+ + + Q + EI ++DL+ LL+ Sbjct: 305 GLTRLERLRISDASAQQRAGRAGRLEPGVCYRIWPESQQRMLQPATPAEIREADLAPLLL 364 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGNDPRLA 421 EL WG +DP QMSWLD PP + LL LGA+ E ++ G++MA L PRLA Sbjct: 365 ELALWGVADPTQMSWLDPPPEGAVAQGWALLVALGAVDEARHITPLGRQMAQLPLHPRLA 424 Query: 422 AMLVSAKNDDEAATAAKIAAILEE--PPRMGNSDLGVAFSRNQPAWQQRSQ--------- 470 M+ A A A +AA+L E P + G + + R Q Q R Q Sbjct: 425 HMVCMAPEPAAQAMACDVAALLSERDPLKGGARQVDLHL-RWQSVAQFRRQGSAGPGVDA 483 Query: 471 -----------QLLKRLNVRGGEADSSLIAPLLAGAFADRIAR-RRGQDGRYQLANGMGA 518 QL L V + + LLA A+ DR+A+ R GQ GRY LA+G G Sbjct: 484 ASLQRIVRGADQLRHLLGVSRQQVAHGDLGLLLAAAYPDRVAQLRPGQRGRYLLASGRGV 543 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 LD D LS L+ L G A + R LA+ + + + P Q V W D Sbjct: 544 RLDEMDPLSGEPLLVVAALDAGEA--EGRAYLAVSLAQEAFMALQPPAWQAQ--VVWSDQ 599 Query: 579 QGTLKAWRRLQIGQLTVKVQPL-AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 Q + A R+ G L ++ QPL + E + AML G+R GL+VL WT A Q + R+ Sbjct: 600 QQRVVAERQRCFGALVLERQPLHGEAPEAAVLAAMLVGVRRMGLAVLPWTPAAMQYQARV 659 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 A+ E WP +++ LL LE WL P + GV+ L+ L++ + L+ L W QQ Sbjct: 660 QLMARL--ESGWPLLEEAVLLEQLEQWLAPFLRGVNRRAQLERLNMLEILQSQLTWSQQQ 717 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 L+ LP HY VP+GSRI + Y P LAVR+QE+FG A +P + QGRVP+ L LL+P Sbjct: 718 SLEQALPTHYEVPSGSRIKLDYTAGAQPVLAVRIQELFGLAESPCLGQGRVPVTLHLLNP 777 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 AQRP+Q+T DL FW+ + +V+KE++GRYPKH WP++P T R K S Sbjct: 778 AQRPVQVTSDLRGFWQTTWPQVRKELRGRYPKHHWPENPWQAQATARAKPRS 829 >UniRef50_Q0FF79 DEAD/DEAH box helicase n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FF79_9RHOB Length = 826 Score = 537 bits (1384), Expect = e-151, Method: Compositional matrix adjust. Identities = 322/830 (38%), Positives = 483/830 (58%), Gaps = 41/830 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ VL EL+ A+ +L AP GAGK+T +P+ LLA KII+L+PRRLA R+ Sbjct: 8 LPIDEVLNELIKAMREKNHAVLQAPPGAGKTTRIPIALLASDLFEKKIIMLQPRRLAVRS 67 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+RLA+ ++ G TVGYRMR ++ V TR+EVVTEGVL +MIQ DPEL+ V +I D Sbjct: 68 AAKRLAQHYGDQLGQTVGYRMRGESKVSNKTRIEVVTEGVLIKMIQNDPELNNVSCIIFD 127 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERSL ADL L L+++ LR+DL +L+MSATLD + +++ +APV+ S G+S+ V Sbjct: 128 EFHERSLSADLGLTFCLEIRSELREDLGILVMSATLDAAPVAKLMGDAPVITSSGKSYDV 187 Query: 184 ERRYLPLP------AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 YL P F A++ + + GS+L FLPG EI++VQ L +++ Sbjct: 188 CPYYLSKPWKFNKTFKNDFIQAISGLIIKAFEENEGSILAFLPGAREIKQVQTFLKAKLA 247 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +D+ + PLYGA+S ++Q+KAILP+ + RK++LAT+IAETSLTI+ IR+V+D R +R Sbjct: 248 NDLDIYPLYGAMSFDEQQKAILPSCR--RKLILATSIAETSLTIKDIRIVIDSGLTRRSR 305 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP +G++RLIT+RV++A QR GRAGR G+ L K + EPEIL SDL Sbjct: 306 FDPSSGMSRLITERVTKAEAIQRMGRAGRTNTGVCYKLWTKGEEGGLKPFPEPEILISDL 365 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGN 416 S L MEL WG S+P + +L QP + A+ LL+ LGAL + +++A GQK++ Sbjct: 366 SPLAMELAAWGVSNPKNLPFLTQPKSSDFQTAQELLRDLGALNDNGKITALGQKISLEPT 425 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG-NS--DL---------GVAFSRNQP- 463 PRLA +L+S D A + A++E +G NS D ++F N P Sbjct: 426 HPRLARILISGGQD-----ANLVVALIESKDILGPNSPTDFKLRIDAMKNSISFENNNPY 480 Query: 464 AWQQRSQ----QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQD-GRYQLANGMGA 518 A +++ +L KRL+ +G S+ A ++A A+ DRI R Q+ G++ L+ G GA Sbjct: 481 AINKKASSNVLKLSKRLHPKGQLELSN--AQMVALAYPDRIGLSRNQNRGQFLLSGGKGA 538 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 + A+D L+ + ++A L L G +A++ + + + E ++ ++ EW Sbjct: 539 FISASDQLASAKMIVA-LNLDGDKR-EAKLRIGIEILETEFMELFHDQIKFKRICEWSKR 596 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 + + L + + + + + +A+L GI D GL +L WT++ + R Sbjct: 597 ELKVITSEEKTFQSLVLSKKKWTSCNPELIAKALLMGINDIGLDILPWTSKTKNFLAR-- 654 Query: 639 CAAKWLPEYDW-PAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 A K D+ P E L WLLPH+ G S L+ L++ ++ L W + Sbjct: 655 -ANKLNQTSDFLPNCSLEFLSKKTHEWLLPHLVGFRSKGDLEKLNMIDIIKNLFSWKQIE 713 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 L+ P PTG+++ I Y E+ P + +R+QE+FG T+PTI + PL++ELLSP Sbjct: 714 YLNKNAPEFILAPTGTKMIINYSEEQ-PKIRIRLQELFGLKTHPTIGENNEPLLVELLSP 772 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 A R +Q T DL FW +Y +V+++M+GRYP+H WP+DP N PTRR KK Sbjct: 773 AMRIVQTTSDLPKFWLTSYSDVRRDMRGRYPRHPWPEDPMNAEPTRRIKK 822 >UniRef50_B9ZJ54 ATP-dependent helicase HrpB n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJ54_9GAMM Length = 837 Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust. Identities = 349/839 (41%), Positives = 493/839 (58%), Gaps = 42/839 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQ----VLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPR 57 S P A L +LL LD A + +L A GAGK+T +PL L A ++I+L+PR Sbjct: 6 SEAPQARALEDLLNPLDAALESRGAAVLVAEPGAGKTTRVPLHLAAC-NREDRVIVLQPR 64 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 RLAAR A +A L E G TVGYR+R + V TR+E+VT+G+ R IQ DP L GV Sbjct: 65 RLAARMAATYMAGQLGESAGQTVGYRVRDEQKVSERTRVELVTDGLFLRRIQGDPLLEGV 124 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML--PEAPVVI 175 G V+ DEFH R +A+LALA L V++ LR +L++++MSATLD++ + ++L PEA V Sbjct: 125 GTVVFDEFHLRRPEAELALAFALQVRRLLRPELRIVVMSATLDDEAVARLLAGPEADAVA 184 Query: 176 ---SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 + GR FPVE RY P D VA A + L E GS+L+FLPG EI+ V Sbjct: 185 VLRARGRQFPVEVRYAPTAKDAPLADGVAQAVRDALAVEPGSILVFLPGEREIREV---- 240 Query: 233 ASRIGSDV-------LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 A+R+G V + PL+G LS +Q +A+ PAP G RKVVLAT+IAETSLTIEG+R Sbjct: 241 AARLGEGVDTPAGPARIAPLFGRLSAQEQARAVRPAPAGERKVVLATDIAETSLTIEGVR 300 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 +V+D R RFD TGL+RL+T+ S+A+ QRAGRAGR E G+++ L ++ Sbjct: 301 VVIDTGLSREPRFDAATGLSRLVTRPASKAAAEQRAGRAGRTESGVAIRLWSRADEVARP 360 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RL 404 + P + Q DL L +EL WG + A++ WL+ PP L +A+ +L LGA++ + R+ Sbjct: 361 DYATPGMQQVDLLPLALELAGWGEA-VAELDWLEPPPAQGLASAQAVLAELGAVDADGRV 419 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS---DLGVAFSRN 461 + GQ + L PRLA ML+ + A A ++A +EEP G +LG R Sbjct: 420 TGHGQALLRLPAHPRLAHMLLRGRERGLARLACELAVAVEEPGVAGPEPPLELGARLERA 479 Query: 462 Q-------PAWQQRSQQLLKRLNVR--GGEA---DSSLIAPLLAGAFADRIARRRGQ-DG 508 + P+ +R +Q L R+ R G EA +SS + L A A+ +RIARRRG+ G Sbjct: 480 RRSGGRAWPSGLRRLEQALARVGGRPVGTEAVLDESSALGVLAALAWPERIARRRGEAAG 539 Query: 509 RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQ 568 R+ + NG GA L + L+ ++L+A + A +ARI A+ +D+ L Q P+L Sbjct: 540 RFVMGNGRGAWLPERERLAHTDYLVA--VDCTDADREARIRCAVALDLAALEQEAPELFH 597 Query: 569 QSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTA 628 + +W + L+ R +IG L V+ Q +A +R +GL++L W Sbjct: 598 RETRCDWVEDGARLENARVRRIGTLVVERQMVALDDPAATIPRWCERLRREGLALLPWDD 657 Query: 629 EAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688 A QLR R+ + +PE +P + D +LL ALE WL P++ G+ R L+ LD+ LR Sbjct: 658 TATQLRARIQLLHEAMPEGGFPDLRDTALLRALEDWLGPYLAGITRRRDLERLDLAAILR 717 Query: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748 LDW QQ+L+ E PA VP+GS I Y +D PP LAV++QE+FG P +A GR+ Sbjct: 718 ARLDWDHQQQLEREAPARIEVPSGSAHRIDYTQD-PPVLAVKLQELFGLGETPRVAGGRM 776 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LVL LLSPA+RP+Q+T+DL FW+ Y +V++E+KGRYPKH WP+DP N TR TK+ Sbjct: 777 ALVLHLLSPARRPVQVTQDLKSFWENGYPDVRRELKGRYPKHPWPEDPWNAPATRHTKR 835 >UniRef50_B6WQJ6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQJ6_9DELT Length = 870 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 373/848 (43%), Positives = 488/848 (57%), Gaps = 49/848 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 + S PV AV EL AL+ +LSAP GAGKS+ +PL LL P + G KI+LLEPRR+ Sbjct: 25 LPSAPVDAVRAELAGALEHG-NAVLSAPPGAGKSSRVPLWLLEAPWLEGRKILLLEPRRV 83 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR +A+ A LL E G TVGYRMR ++ V TRLE++TEGVLTR + DPELSGVG Sbjct: 84 AARALARYAARLLGEDVGQTVGYRMRQESAVSARTRLEIITEGVLTRRLLADPELSGVGC 143 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL AD+ LAL L+ + LR DL+LL+MSATLD+ ++ +L +APV+ EGR Sbjct: 144 VIFDEFHERSLHADMGLALCLESRAVLRPDLRLLVMSATLDSHKVAALLEDAPVIACEGR 203 Query: 180 SFPVERRYLPLP---AH---QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 FPVE RYLPLP AH Q +A A ++RQESGSLL FLPG GEI+RV E L Sbjct: 204 QFPVEERYLPLPPAAAHSGPQALWPHMADVIAALMRQESGSLLAFLPGTGEIRRVAELLE 263 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R+ +D L PLYG LS +Q AI PA G RKVVLAT IAETSLTIEGIRLVVD Sbjct: 264 GRLPADTRLYPLYGMLSPQEQDAAIAPAAAGERKVVLATAIAETSLTIEGIRLVVDAGLS 323 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R +RFDP +GL+RL T RVS A QRAGRAGRLEPGI L + + Q PEIL Sbjct: 324 RESRFDPASGLSRLETVRVSLAGARQRAGRAGRLEPGICCRLWQQAEEHDFRPQQRPEIL 383 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERL--SAQGQ 409 +DL+ ++L WG P + WLD PP +L A+ L LGA+ E L + G+ Sbjct: 384 DADLAPFCLQLAVWGARRPEDLPWLDLPPKAHLAVAREQLAGLGAITPGTEELLPTPLGR 443 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS 469 ++ L PRLA +L+ A+ A AA +A++L+E + +D +A ++ S Sbjct: 444 QLVKLPLPPRLACLLLRAREHGYGALAACVASLLDERDPLPLADASLALRLDRFCSPSDS 503 Query: 470 QQLLKRL-----------NVRGGEADSSLIAPLL--------------AGAFADRIARRR 504 +RL ++ G A + A LL A A+ +R+A R Sbjct: 504 HGSFRRLRQWAERMARLADIPTGNAPDASGASLLRTARQQLPHLGEVVALAYPERVALRS 563 Query: 505 GQD---GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQ 561 G++ +Y + NG A+L D+L+R E L + G+ RI LA +D D L + Sbjct: 564 GENNGMAQYLMRNGKAAVLPLTDSLARQEVLAVAAVDAGT---RGRIRLAAALDHDVLEK 620 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 + +S+ + +G + A RR ++G L + PL +P D A+ +RD+GL Sbjct: 621 LFRAEITESEDLN-VSPEGQVNARRRRRLGALLLDDAPLPRPDGDACALALCAFVRDQGL 679 Query: 622 SVLNWTAEAEQL--RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLK 679 VL W A Q R+RLL P WP + ++ L LE WL PH+ LR L Sbjct: 680 RVLPWDEPARQWLARVRLLHQTWGDP---WPDLSEDWLRDELENWLAPHLGNCTDLRQLS 736 Query: 680 SLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAT 739 + AL LL + + +RL+ PA + P+G I Y + P +A ++QE FG Sbjct: 737 PARLADALHCLLPYPLPRRLEQLAPAQWQAPSGRSHPIVYDAEGGPFVAAKLQEFFGCED 796 Query: 740 NPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANT 799 P IA GRVPL L LLSPA RPLQITRDL FW+ Y +V+ EM+GRYP+H WPDDP Sbjct: 797 TPHIADGRVPLTLHLLSPAGRPLQITRDLGHFWRNGYPQVRAEMRGRYPRHPWPDDPLTA 856 Query: 800 APTRRTKK 807 T RT + Sbjct: 857 QATARTNR 864 >UniRef50_A8LHX9 ATP-dependent RNA helicase n=30 Tax=Alphaproteobacteria RepID=A8LHX9_DINSH Length = 834 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 353/823 (42%), Positives = 482/823 (58%), Gaps = 35/823 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 +SLP+ LPELL A+ + +L AP GAGK+T +PL LL G G+I++LEPRRLAA Sbjct: 25 ASLPIDGALPELLAAMAGSGMAVLQAPPGAGKTTRVPLALL-EAGAAGRIVMLEPRRLAA 83 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R A+R+A L E G TVGYRMR + VGP TR+EVVTEG+LTR + DPEL G+G VI Sbjct: 84 RAAAERMAASLGEPVGATVGYRMRGASKVGPATRIEVVTEGILTRWLMADPELPGIGTVI 143 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 DEFHERSL ADL LAL L+V+ LR+DL LL+MSATLD + + ++ APVV S GR+F Sbjct: 144 FDEFHERSLNADLGLALCLEVRGALREDLNLLVMSATLDAEPVAALMGGAPVVTSAGRAF 203 Query: 182 PVERRYL--PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE RYL PLP RF AVA + L + GS L+FLPG GEI++V L R+G D Sbjct: 204 PVEARYLERPLPRGARFAPAVADLVLQALEEAEGSALVFLPGEGEIRQVAALLRDRVGRD 263 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V++ PL+GA+ L++QR AI PAP+G RKVVLAT IAETSLTIE +R+VVD + R ARFD Sbjct: 264 VVVRPLFGAMKLSEQRAAIAPAPEGQRKVVLATAIAETSLTIEDVRIVVDGGRARRARFD 323 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +G++RL+T+ VS+A QR GRAGR+ PG+ L + AA + PEI +DLSG Sbjct: 324 PGSGMSRLVTEPVSRAEAAQRQGRAGRVAPGVCYKLWTRGAEGAFAAYAPPEIAVADLSG 383 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 L ++L WG + P ++ L PP A+ L MLGAL+ E R++ G+ +A + P Sbjct: 384 LALDLAVWG-TGPEDLALLTPPPEGAWAEARALCAMLGALDAEGRVTDHGRALARMPTHP 442 Query: 419 RLAAML-VSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN-----------QPAWQ 466 RLA ML V+ + E +AA+L E R + GV +R P + Sbjct: 443 RLAHMLHVAGRQGTE------LAALLSE--RDLDRGAGVDLARRVAILRGDAPAPDPGAR 494 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIA-RRRGQDGRYQLANGMGAMLDANDA 525 R ++ KRL E + + A A+ DRI RR G+ RY LA G GA+++ + Sbjct: 495 ARVREEAKRLARDLPERAALSLGAQAALAYPDRIGLRRAGEAPRYLLAGGKGAVMEPDAP 554 Query: 526 LSRHEWLIAPLLLQGSASP-DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKA 584 L+ ++A L P +ARI A+ V E+ + D W + A Sbjct: 555 LAGMRLIVATDL---DGDPREARIRQAVAVTEGEVRALFADRILWRDLCAWSKRFRKVVA 611 Query: 585 WRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL-LCAAKW 643 ++ +G L + + E A L G+RD GL+ L E+LR R+ LC A Sbjct: 612 RQQECLGALVLADRVWRDVPEAARAAAALEGVRDLGLAALGGGPAFERLRARVALCRAGG 671 Query: 644 LPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSEL 703 L + P + + +LL A E WLLP + V L+ +D + LR L W Q ++++ Sbjct: 672 L---EVPDMSEAALLEAGEAWLLPVLGQVRDADDLRRIDPLEPLRAWLGWDALQAVEAQA 728 Query: 704 PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQ 763 P T P G ++ + Y + P A R+QE +G +PT+ GRVPL L LLSP Q+P+ Sbjct: 729 PGAITTPLGRKLPVDYSGEVPEVQA-RVQEFYGVTRHPTVGPGRVPLRLTLLSPGQKPVA 787 Query: 764 ITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 +T DL FW G Y +++K+M+GRYP+H WP+DP APT R K Sbjct: 788 VTSDLPGFWVGGYADLRKDMRGRYPRHPWPEDPTEAAPTTRAK 830 >UniRef50_Q313C3 ATP-dependent helicase HrpB n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q313C3_DESDG Length = 863 Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust. Identities = 358/862 (41%), Positives = 487/862 (56%), Gaps = 70/862 (8%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LPV+ +L EL L +L AP GAGK+T +PL LL G+I++LEPRRLAAR+ Sbjct: 12 LPVSGILQELTDTLARTTCCVLQAPPGAGKTTAVPLALLHAQLPAGRIVMLEPRRLAARS 71 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+R+A++L ++ G+TVG+R+R +C G TR+EVVTEGVLTRM+Q DP L+ V VI D Sbjct: 72 AARRMAQMLGQRTGETVGFRVRHHSCTGSGTRIEVVTEGVLTRMVQSDPALTDVACVIFD 131 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERSLQ DL L L L+VQ LR +L+L++MSATLD + ++ PV+ + GRS V Sbjct: 132 EFHERSLQGDLGLTLCLEVQAALRPELRLIVMSATLDGAPVAALMGGCPVLTATGRSHAV 191 Query: 184 ERRYLPLPAHQRFDDA------VAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 R+ PA + D +A L +E GS+L FLPG+ EI V E L + Sbjct: 192 HTRHFAPPAGRSMLDRHHCIQLIADGIRRALYEEQGSILAFLPGLREITLVAEALQGAVS 251 Query: 238 SD---VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 D V + PL+G L Q AI PAPQG+RKVVL+T++AETSLT+EGIR+VVD R Sbjct: 252 PDGCRVQVLPLHGRLPPQQQDAAICPAPQGVRKVVLSTSVAETSLTLEGIRIVVDSGLTR 311 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 A+FDPR+G+T L+T+R S A+ QR GRAGRL+ GI L +K A PEIL+ Sbjct: 312 KAQFDPRSGMTGLVTRRASLAAAAQRQGRAGRLQEGICYRLWSKADEPAMPAFDRPEILE 371 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG------ERLSAQG 408 +DL L +EL +WG D + WL PP ++ A LL LGAL+ ++ G Sbjct: 372 ADLVPLALELARWGACDHNSLPWLTPPPHSSMEQAAMLLCQLGALKPAPSTGLRHITQHG 431 Query: 409 QKMAALGNDPRLAAMLVSAKND---DEAATAAKIAAILEEPPRM--GNSDLGVAFS---- 459 +MAAL PRLA M+++A + D A +IAA+ E P +DL Sbjct: 432 ARMAALPVHPRLAHMVITAADTGQPDILEQACRIAAVFSEAPSALRRQADLCTVIEDAAT 491 Query: 460 --RNQPAWQQRSQQLLKRLNVRGGEA--DSSLIAPL------------LAGAFADRIARR 503 R+ Q+ +RL G+ D + L A AF DRI + Sbjct: 492 GRTTDSRTAARTAQMTRRLAAAAGKGPDDRPAVQALRTLPADARCAALCALAFPDRIGKA 551 Query: 504 RGQDGRYQLANGMGAMLDANDALSRHEWLIAPLL--------LQGSASPDARILLALLVD 555 GQ GR+ L G A++ A L+ +++A L + +A+ D+R + L D Sbjct: 552 TGQ-GRFLLTCGRAAIVAATHPLAGSPFIVAAELDGQNADARIHAAAALDSRTVETLYAD 610 Query: 556 IDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA-KPSEDELHQAMLN 614 + Q D ++W+ ++A + + +L ++V+PLA KP QAM Sbjct: 611 N----------IAQQDNIQWNPQTEAVEATTQRTLWKLPLEVRPLAEKPHTQAAVQAMCE 660 Query: 615 GIRDKGLSVLNWTAEAEQLRLRLL-------CAAKWLPEYDWPAVDDESLLAALETWLLP 667 GIR GLS L WT E E LR R++ C A + WP +E+LLA LETWL P Sbjct: 661 GIRSMGLSALPWTRETETLRQRVMLLRRHEPCGADQI--NIWPDFSEETLLATLETWLAP 718 Query: 668 HMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPAL 727 + G+ LK+L++ AL+ +L W + RL+ E P TVP+GS I + Y P L Sbjct: 719 FLDGIRRRTQLKNLNLKTALQAMLPWPLPARLEQEAPELLTVPSGSNIRLDY-SGPVPVL 777 Query: 728 AVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRY 787 AV++QEMFG P I GR+P+++ LLSPA RPLQIT+DL FWK YR+V+ EMKGRY Sbjct: 778 AVKLQEMFGATATPAIGNGRIPVLVHLLSPAGRPLQITQDLEGFWKNGYRQVKAEMKGRY 837 Query: 788 PKHVWPDDPANTAPTRRTKKYS 809 PKH WPDDP + PTRRT S Sbjct: 838 PKHPWPDDPVSARPTRRTNTGS 859 >UniRef50_B8J0D1 ATP-dependent helicase HrpB n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J0D1_DESDA Length = 900 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 366/876 (41%), Positives = 491/876 (56%), Gaps = 87/876 (9%) Query: 12 ELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAARNVAQRLAE 70 LL AL+ ++LSA GAGKS+ +PL LLA P + G+ ++LLEPRR+AAR +A+ +A Sbjct: 24 HLLAALEQNCGLVLSASPGAGKSSRVPLWLLAAPWLRGRNVLLLEPRRVAARALARYMAA 83 Query: 71 LLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSL 130 LL E G TVG RMR +N GP+TR+EVVTEGVLTRM+Q P+L VI DEFHERSL Sbjct: 84 LLGENVGHTVGLRMRDENRTGPHTRIEVVTEGVLTRMLQEQPDLPATACVIFDEFHERSL 143 Query: 131 QADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLP- 189 AD+ LAL L+ + LR DL+L++MSATLD + ++ + P + S GR PV+ YLP Sbjct: 144 AADMGLALCLESRAVLRPDLRLVVMSATLDVQAVSDLMGQCPAIHSPGRCHPVDLHYLPH 203 Query: 190 -LPAHQRFDDA---------VAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 L + A +A +L++E GSLL FLPG GEI++ L R+ D Sbjct: 204 TLQTGGKISSAGGSFALWQHMASVILTLLQKEPGSLLAFLPGAGEIRQTASFLEERLPPD 263 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 VLL L+G LS Q AI PAP G RKVVLAT+IAETSLTIEG+R+VVD R++RF Sbjct: 264 VLLHSLHGNLSAAQQDAAIAPAPPGKRKVVLATSIAETSLTIEGVRMVVDAGLARLSRFA 323 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +GL+RL+T+RVS A QR GRAGR EPGI L AKE+ + PEIL +DL+G Sbjct: 324 PASGLSRLVTERVSLAGADQRTGRAGRTEPGICCRLWAKEEEKGMRPHIRPEILDADLTG 383 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDP 418 LL++L WG SDP+ M WLD PP+ +L A++ L++LGA + + G +MAAL +P Sbjct: 384 LLLQLAAWGASDPSAMPWLDAPPLPHLAVARQCLELLGAFTPAGKPTDLGLRMAALPLEP 443 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEE---------PPRMG-------NSDLGV------ 456 R A ML+ A +AA+LEE P + G +SDL + Sbjct: 444 RSARMLLWGAQHGHGPLACCLAALLEERDPLANTQRPEKRGQWGWRQTDSDLALRLDWLC 503 Query: 457 --------AFSRNQPAWQQRSQQL-LKRL-------------------NVRGGE-----A 483 A +R + R Q L L RL N G A Sbjct: 504 RSPHQGATAPAREHARQRVRRQSLRLTRLLAQIMKTDHDPSPIPDHKQNAASGLFADALA 563 Query: 484 DSSLIAPLLAGAFADRIARRR--GQDG-------RYQLANGMGAMLDANDALSRHEWLIA 534 D S + L A A+ + +A + GQ G Y + +G A L D+L+R E+L A Sbjct: 564 DVSALGLLTAVAWPEYVAMLQPGGQKGDIGAPMRTYLMRSGRAARLLQTDSLARSEFL-A 622 Query: 535 PLLLQGSASPDARILLALLV---DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIG 591 + G+ P RI LA + D++EL Q VQ T + Q T + RRL G Sbjct: 623 VAQVDGTL-PHGRIRLAAALSGTDMEELFSS--QAVQTDITCVTEAGQVTARRQRRL--G 677 Query: 592 QLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 + ++ PL +P + + A+ +R++GL+ L W ++ Q R R+ + P+ WPA Sbjct: 678 AIVLEDIPLPRPEPEHIVAALCAHVRERGLTCLPWNVQSLQWRARVALLHELEPDA-WPA 736 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 V D +LL +LE WL P MT SL L + AL LL + LD P H+ P+ Sbjct: 737 VSDAALLGSLEAWLGPFMTNCTSLAALSAETFSAALHSLLLGNGGRLLDRLAPTHWQAPS 796 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 G++ I Y E+ PAL V++QEMFG P IA GRVPL+L L SPA RPLQ+TRDL+ F Sbjct: 797 GAQRPITYGEEGGPALDVKLQEMFGCVDTPCIAGGRVPLLLRLNSPAGRPLQVTRDLAHF 856 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 W+ Y V+ EM+GRYP+H WP+DP T TKK Sbjct: 857 WRNGYPAVRGEMRGRYPRHPWPEDPLTATATALTKK 892 >UniRef50_A0YC48 ATP-dependent helicase HrpB n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC48_9GAMM Length = 909 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 337/896 (37%), Positives = 495/896 (55%), Gaps = 93/896 (10%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH----PGIN----GKIILLE 55 LP++ VL + +L+ Q++L AP GAGK+T +PL +L H P N +I++LE Sbjct: 10 LPISDVLTNIDLSLEQHLQLVLEAPPGAGKTTLVPLSILKHQSDKPIKNWLGQQRILMLE 69 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRR+AAR+ A R+A LLNE G TVGYR+R + V +TR+EV+TEG+L RM+ +DP L+ Sbjct: 70 PRRMAARSAATRMASLLNEPVGKTVGYRVRQETKVSRHTRIEVITEGILVRMLIQDPSLA 129 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRD---DLKLLIMSATLDNDRLQQMLPEA- 171 +GL+I DEFHERSL ADL LA L ++ RD L++LIMSATLD + +L A Sbjct: 130 DIGLLIFDEFHERSLDADLGLAFALQGREIFRDASNPLRILIMSATLDGSAIASLLDSAR 189 Query: 172 ---------PVVISEGRSFPVERRYLPLPA-HQRFDDAVAVATAEMLRQESGSLLLFLPG 221 P++ S G+ +PV Y H+ +A E+ G +L+FLPG Sbjct: 190 EDPTDTAATPIISSLGKQYPVAIHYGARKQQHEDIIKRTVLALIEITNTLEGDILVFLPG 249 Query: 222 VGEIQRVQEQLASRIGSDVL----LCPLYGALSLNDQRKAILPAPQ-----GMRKVVLAT 272 EI V+ + ++ + + PLYGAL Q++AI P Q G RK+VLAT Sbjct: 250 YKEINNVRGRFSASLSDSQSSLLHIFPLYGALPFALQQQAIEPLSQADRQRGARKIVLAT 309 Query: 273 NIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGIS 332 +IAETSLTIEGI +V+D R F P TG+TRL T +SQ S QR GRAGRLEPG Sbjct: 310 DIAETSLTIEGITIVIDSGLCRQPIFSPATGMTRLQTNSISQDSSIQRMGRAGRLEPGQC 369 Query: 333 LHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRL 392 L ++EQ + S PEILQ+DL+ L ++LL WG +P +++WLD PP L A L Sbjct: 370 FRLWSEEQQKLLPRHSPPEILQADLASLTLQLLAWGIHEPEELAWLDIPPRGALSQALDL 429 Query: 393 LQMLG----------------ALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATA 436 L+ LG AL+ L+ G ++ +L PRLA ML+ ++ ++ A Sbjct: 430 LKQLGVIQQHDKQKALTDNEPALDHWVLTPHGTQLVSLPIHPRLAHMLLRSRTINQQKVA 489 Query: 437 AKIAAILEEPPRMGN---SDL--------GVAFSRNQ-PAWQQRSQ-------QLLKRLN 477 A +A +L + + N +D+ G + + Q +WQQR+Q +LL L+ Sbjct: 490 AALAVLLTDRSPLSNRFDTDITTQIAIVQGTSHCQKQFRSWQQRAQRQALLFEKLLSDLS 549 Query: 478 VRGGE------ADSSLIAP------LLAGAFADRIARRR-GQDGRYQLANGMGAMLDAND 524 E +D++ IA LLA A+ DRIARR+ +Y L+NG A++D D Sbjct: 550 TDADESCSENDSDANAIAEQNAAGYLLACAYPDRIARRKSAHSNQYLLSNGRTAIIDFAD 609 Query: 525 ALSRHEWLIAPLLL---QGSASPDA----RILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 HEWL A ++ Q +P + RI A +DI+ L+ S ++ WD+ Sbjct: 610 PCCGHEWLSAAEVVGSTQTQKTPQSNNTDRIYSACPLDINLFDGALSYLINASTSIHWDE 669 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 A + +G + ++ + L + + A++ I+ +GL++L WT Q + R+ Sbjct: 670 NTDRFSAEKTHAVGAIVLRKERLENITLESKINAIVTHIQKRGLNILPWTKSTRQWQARV 729 Query: 638 LCAAKWLPEYD------WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 + + WP V D+ LLA+LE WL P ++ + LD+ L LL Sbjct: 730 TLLRRIYSSSNDKARSPWPDVSDQHLLASLEHWLTPFLSKIGKRSDFDKLDLQAILNTLL 789 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 W + Q+L + P TVP+G + I Y + + P L V++QEMFG + PTIA+G + L+ Sbjct: 790 PWPLPQQLTALAPLTITVPSGHQAGIDYSQTS-PVLNVKLQEMFGCRSTPTIAEGNIKLI 848 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 ++LLSPA+RPLQ+T+DL FWK +Y +V+KEM+GRYPKH WPD+P T+ TK+ Sbjct: 849 VQLLSPARRPLQVTQDLEGFWKTSYHDVKKEMRGRYPKHPWPDNPLEAVATKYTKR 904 >UniRef50_Q0C562 ATP-dependent helicase HrpB n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C562_HYPNA Length = 812 Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust. Identities = 343/819 (41%), Positives = 477/819 (58%), Gaps = 28/819 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL---LAHPG-INGKIILLEPRR 58 +LP+ +PE+L AL P+++L+AP GAGK+T +PL L L PG I G+IILLEPRR Sbjct: 6 ALPIDEAMPEILRALAAGPRLVLAAPPGAGKTTRVPLALAGLLGAPGVIEGRIILLEPRR 65 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +AAR A+R+A L E+ G T+G R V TR+EV+T+G+ TR I D EL+G+G Sbjct: 66 VAARMAAERMASSLGERVGQTIGLTTRVDRKVSRGTRIEVITDGLFTRRILADQELTGIG 125 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V+ DEFHER L ADL LAL L+VQ LR+DL+LLIMSATLD + + + +APV+ SEG Sbjct: 126 AVVFDEFHERRLNADLGLALALEVQSILREDLRLLIMSATLDTGAVSRAI-DAPVIESEG 184 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 R +PVE RYL + R +D + + LR+E GS+L FLPG EI R E L +G Sbjct: 185 RMYPVETRYLG-KSDDRIEDRMPKVIRQALREEPGSVLAFLPGAREINRTAEALTG-LGP 242 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 D+L+ PLYGALS +Q A+ PAP G RK+VLAT+IAE++LTIEG+R+V+D RVA Sbjct: 243 DILIAPLYGALSPGEQDAAVSPAPPGKRKIVLATDIAESALTIEGVRIVIDSGLSRVAEE 302 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 D +RL T R S+AS QR GRAGR PG+ L + A PEIL +DLS Sbjct: 303 DLGGLGSRLTTVRASRASADQRRGRAGRTSPGVCYRLWDEAATRGLMAAPTPEILVTDLS 362 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGND 417 GL + L +WG D ++W+D PP L A+ L LGAL+ + L+ +G++MA L Sbjct: 363 GLALTLAEWGAPDAGALTWMDAPPAGKLKGARAGLIALGALDADGVLTPRGKEMARLPLP 422 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN-SDLGVAFSRNQPAWQQRSQQLLKRL 476 PRLAA++ SA E A AA+IAA++ E G+ SDL R + R++ L ++ Sbjct: 423 PRLAALVASAPGAPEKALAAEIAAMMGERGMGGDSSDLTQRLQRFRTDGSPRARALKQQA 482 Query: 477 NV-RGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIA 534 GGE +A LLA A+ D++ARRR G G Y +A+G A + +D L++ +WL+ Sbjct: 483 KSWGGGETPGGDLAKLLARAWPDQVARRRPGSAGSYLMASGRAAGVQPSDGLAKSDWLVV 542 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLT 594 L G A+ + RILL L V E + Q + +D G A R +G + Sbjct: 543 ADL--GGAAKEPRILLGLPVTEAEAL--ASQKTITEERAAFDPKTGKFTARRVKALGAIV 598 Query: 595 VKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQL--RLRLLCAAKWLPEYDWPAV 652 + PL KPS + AML I G + + E+ RLR+L A + + P + Sbjct: 599 LSEAPLPKPSAEAAATAMLAAIETDGFAAIGAGDVIEETLSRLRILAEAGLI---EAPDI 655 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLK---SLDIYQALRGLLDWGMQQRLDSELPAHYTV 709 ESL++ WL P + RG + D+ +AL LDW +Q+ L + P + Sbjct: 656 SPESLVSGAPVWLKPAL----KRRGAQLPEDHDVREALVQSLDWPLQEALRNHAPLSLEL 711 Query: 710 PTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLS 769 P+G + + + P ++ R Q +G +P IA GRVP+ +ELLSP +P T+DL+ Sbjct: 712 PSGQSARVDWLDPRAPLVSARAQAFYGLTEHPKIAAGRVPVTVELLSPGMKPAATTQDLA 771 Query: 770 DFWKGAYREVQKEMKGRYPKHVWPDDPANT-APTRRTKK 807 FW Y+++ K+M+GRYPKH WPDDPAN A RTKK Sbjct: 772 RFWGAGYKDMAKDMRGRYPKHDWPDDPANARAHEGRTKK 810 >UniRef50_D1P961 ATP-dependent helicase HrpB n=1 Tax=Prevotella copri DSM 18205 RepID=D1P961_9BACT Length = 859 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 325/859 (37%), Positives = 479/859 (55%), Gaps = 66/859 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-------------HPGINGK 50 LP + + AL + ++++AP GAGKST LPL +L H GK Sbjct: 13 LPAYQIADSVNEALMESANLVITAPPGAGKSTLLPLTILRGMSDQALEGFIHDHLKSQGK 72 Query: 51 IILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQR 110 I++LEPRRLAAR +A+R+A++L E G T+GYR+R ++ V +TR+EV+TEG+LTRM+ Sbjct: 73 ILMLEPRRLAARQIAERMAQILGEPVGKTIGYRVRFESKVSDDTRIEVLTEGILTRMLVN 132 Query: 111 DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE 170 D L GV +I DEFHERS+ +DLALAL Q+ +R DLKL+IMSAT+D + Q L + Sbjct: 133 DATLEGVSCLIFDEFHERSINSDLALALARQTQEIIRPDLKLIIMSATIDASIICQAL-Q 191 Query: 171 APVVISEGRSFPVERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEI 225 AP++ S+G+ FP+E Y A D +A + R + G +L FLPG GEI Sbjct: 192 APLIESKGKMFPIETVY----ADHDIDRYQVAQEMAATICQAFRNQEGDILAFLPGQGEI 247 Query: 226 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 + +E L S + S L PLYG LS QR AI P+ G RK+VLAT IAETSLTIEG+R Sbjct: 248 MKCEELLRSVLPSATLY-PLYGNLSPEKQRLAIAPSKPGERKIVLATPIAETSLTIEGVR 306 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 +VVD R +D RTGL+ L T R+SQ TQR GRAGR+ G+ L + Sbjct: 307 IVVDSGLCRKLVYDARTGLSHLETVRISQDMATQRRGRAGRITSGVCYRLWTQTSEHLMP 366 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-- 403 Q PEIL +DLS +++++ +G + P + WL PP NL+ A++LL L AL + Sbjct: 367 EQRLPEILDADLSSMVLDIAAFGENKPELLPWLTLPPKGNLVLAQQLLMSLNALTPDHDV 426 Query: 404 ------LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG---NSDL 454 ++ +G +MA L PR+A M++S+ + A A IAA+LEE MG +SD+ Sbjct: 427 HALSGSITEEGSRMAQLPCHPRIAKMMISSDSPAIQALACDIAALLEEKDPMGENEDSDM 486 Query: 455 GVAFS--------RNQPAWQ---QRSQQLLKRLNVRGGEA--DSSLIAPLLAGAFADRIA 501 + S +N W Q +Q+ K L +R D+ + L+A A+ +RIA Sbjct: 487 TLRLSILRSARCKKNLGRWNRIAQIAQEYRKMLRIREDNEPIDAEEVGHLIALAYPERIA 546 Query: 502 RRRGQDGRYQLANGMGAMLDANDALSRHEWL-IAPLLLQGSASP------DARILLALLV 554 G ++++NG +D D+++ +EWL IA L L ++S R+ L+ V Sbjct: 547 HATDHAGNFKMSNGNTIFIDPCDSMAANEWLAIASLNLDSTSSSSSGQGRKGRVFLSAPV 606 Query: 555 DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLN 614 + L Q + + WD +K + +IG L + +P+ + + + + Sbjct: 607 NWKNLP------AQTCENISWDSKALAVKMQQETRIGALIIDSKPIQNANRETVSNIICE 660 Query: 615 GIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTG--- 671 R GLS+ +W +L+ R+ A+W PE + P + E LL + WL ++ Sbjct: 661 AARKDGLSMFDWNESVHRLQQRVAQVAEWHPELEIPDLSTEHLLTTAQAWLPFYLEEGGK 720 Query: 672 -VHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH-EDNPPALAV 729 S+ LK L++ + L +L + +QQ +D P H VP+GS I I Y P L+V Sbjct: 721 MKTSVTELKKLNLCEILWNILPYELQQEIDRLAPTHIRVPSGSNIRIDYRLGAEAPVLSV 780 Query: 730 RMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPK 789 R+QE FG + PT+ GR PL+LELLSP +P+Q+T+DL+ FW+G Y EV+KE+K RYPK Sbjct: 781 RLQECFGMTSTPTVDAGRQPLLLELLSPGFKPVQLTQDLASFWQGTYFEVRKELKRRYPK 840 Query: 790 HVWPDDPANTAPTRRTKKY 808 H WP++P + R K++ Sbjct: 841 HFWPENPLESQAVRGVKRW 859 >UniRef50_Q3BYY2 ATP-dependent helicase HrpB n=20 Tax=Bacteria RepID=Q3BYY2_XANC5 Length = 866 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 336/833 (40%), Positives = 459/833 (55%), Gaps = 37/833 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAA 61 + P++ +LP++ +L P+++L AP GAGK+T +PL LL P + G+ I++LEPRR+AA Sbjct: 38 AFPISPLLPQIRDSLAAHPRLVLEAPPGAGKTTQVPLALLDAPWLAGRRIVMLEPRRVAA 97 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+ AQ +A L E G+TVGYR+R +N TR+EVVTEG+LTR+IQ DP L VG ++ Sbjct: 98 RSAAQFMARQLGEPVGETVGYRIRFENKTSARTRIEVVTEGILTRLIQDDPMLESVGALL 157 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 DEFHER L DL LAL LDVQ +RDDL+++ MSATLD +RL L EAP + S GRSF Sbjct: 158 FDEFHERHLAGDLGLALALDVQAQVRDDLRIVAMSATLDGERLAGFL-EAPRLSSAGRSF 216 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVL 241 PVE + P + + A L G +L+FLPG EI RV L + V Sbjct: 217 PVEIAHFPARRDEALEPQTRRAVEHALSTHPGDVLVFLPGQREIARVHRALQDALDPAVQ 276 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 + PL+G LS+ Q + + P PQG R+VVLATN+AE+S+T+ G+R+V+D R +DP Sbjct: 277 VLPLHGELSVEAQSQVLQPDPQGRRRVVLATNVAESSVTLPGVRVVIDSGLAREPHYDPN 336 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 +G +RL ++QAS QRAGRAGR+ G + L Q++R Q EI Q +L+GL Sbjct: 337 SGFSRLDVAAIAQASAEQRAGRAGRVASGWAYRLW--PQSQRLEPQRRAEITQVELAGLA 394 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRL 420 +EL WG S + ++D PP L AA+ LL+ LGAL ++ G++M ALG PRL Sbjct: 395 LELAAWGSS---ALRFVDAPPSGALAAARELLRRLGALTASGGITTLGRRMLALGTHPRL 451 Query: 421 AAMLVSAKNDDEA--ATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS--------- 469 AAML A + A +P R G L + Q RS Sbjct: 452 AAMLAQAGDAPRVALACDLAALLEARDPLRQGGDGLAARWRALAAFRQGRSAADADRGGL 511 Query: 470 -------QQLLKRLNVRGG---EADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGA 518 +Q +RL ++ + LL+ AF DRIA R D RY LANG A Sbjct: 512 AAIDSAAKQWRRRLRCDSAPPSSVEAHALGDLLSHAFPDRIAARHPADPLRYLLANGRSA 571 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 L + L WL+A L + DA +L A VD L + P+ Q D V+WD Sbjct: 572 RLFDHSDLRGEPWLVASELRYEAK--DALLLRAAPVDEAYLRRSLPERFVQQDVVQWDAD 629 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 + L A R+ ++ + +P + A+ + +R GL L WT +Q R R+ Sbjct: 630 KRALVARRQSSFDRIVLDSRPAGRVDPAHAAAALTDAVRQLGLDALPWTENLQQWRARVQ 689 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 +W+PE P + D +LL L+TWL P G L L + +AL+ L W +Q Sbjct: 690 SLQRWMPELALPDLSDATLLETLDTWLRPAFAGKTRLDALDEASLGEALKSALPWERRQW 749 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDN-----PPALAVRMQEMFGEATNPTIAQGRVPLVLE 753 +D P +VP+G I Y D+ PP LAV++QE+FG A P IA GR+ L L Sbjct: 750 IDRHAPTRISVPSGMERPISYALDHAGQPLPPVLAVKLQELFGLAETPRIADGRIRLTLH 809 Query: 754 LLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 LLSP RPLQ+T+DL FW Y +V+KEMKGRYP+H WPDDP A T R K Sbjct: 810 LLSPGGRPLQVTQDLKSFWANTYPDVKKEMKGRYPRHPWPDDPWTAAATHRAK 862 >UniRef50_Q1GIW4 ATP-dependent helicase HrpB n=3 Tax=Rhodobacteraceae RepID=Q1GIW4_SILST Length = 841 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 353/857 (41%), Positives = 485/857 (56%), Gaps = 70/857 (8%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 M+ LP+ LP+L++AL + +L AP GAGK+T +PL +L G+I++LEPRRLA Sbjct: 1 MTRLPIDDALPQLISALRARGRAVLEAPPGAGKTTKVPLAILDAKLTEGRILMLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A L E G TVGYR+R + V +TR+EVVTEG+LTRM+Q DP+L GVG V Sbjct: 61 ARTAAERMASTLGEPAGHTVGYRVRGEAKVSRSTRIEVVTEGILTRMLQSDPDLPGVGAV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL DL LA L+V LRDDL LL MSATLD + ++ AP+V SEGRS Sbjct: 121 IFDEFHERSLNGDLGLAFCLEVASALRDDLLLLAMSATLDAAPVAALM-NAPIVTSEGRS 179 Query: 181 FPVERRYL--PLPAHQRFDDA----VAVATAEML----RQESGSLLLFLPGVGEIQRVQE 230 +PVE R+L PLPA R DA V A AE R SG LL+FLPG GEI+R Sbjct: 180 YPVETRWLPAPLPAKARRIDALVDLVVQAEAETRDKDDRAGSGGLLVFLPGEGEIRRAAS 239 Query: 231 QLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 L R+ + + PL+GAL +QR AI PA +G RKVVLAT+IAETSLTIE IR+VVD Sbjct: 240 ALERRLPAACQVRPLFGALPFAEQRAAIAPATEG-RKVVLATSIAETSLTIEDIRVVVDM 298 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 Q R ARFDP G++RL+T+RV++A TQR GRAGR+ G+ L A+ + AA Sbjct: 299 GQARRARFDPGAGMSRLVTERVTRAEATQRQGRAGRVSAGVCYRLWAQGEEGALAAYPPA 358 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQ 409 EI +DL+ L +EL WG ++P + L PP + A+ LLQMLGAL+ + R++ G+ Sbjct: 359 EIEAADLTSLALELALWG-AEPQDLPLLTPPPAGSFAEAQLLLQMLGALDTKMRITEHGR 417 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL--EEPPRMGNSDLGV----------- 456 +A L PRLA M A + +A +AA+L +P R DL + Sbjct: 418 ALARLPLHPRLAHMFTIAGPE-----SATLAALLADRDPLRGAPVDLALRLEALQDLRRF 472 Query: 457 ----AFSRNQPAWQQRSQQLLKRLNVRGGEADSS---------------------LIAPL 491 + PA Q + + + RGG ++ A + Sbjct: 473 RDRRPYEVKAPAHQAITAEAKRLKRHRGGHGTAAPNPVDGPAAPLFPAAPSGEPLSPAAM 532 Query: 492 LAGAFADRIA-RRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASP-DARIL 549 A A+ DR+A RR+G D R+ L+ G GA+LD D L+ +L+ + +P +A+I Sbjct: 533 AALAYPDRVAQRRKGDDARFVLSGGKGAVLDNADPLAGASYLV---VTDTDGNPREAKIR 589 Query: 550 LALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELH 609 A + + E+ + + W + A ++ + G L + + D + Sbjct: 590 QAAQITLAEIRGLFGDQIAWQEVCSWSKRDRRVVARKQERFGALVLDDRIWKDVPPDAVA 649 Query: 610 QAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHM 669 AML+G+RD GL L+ A R+ LL A D P +E L+A LE WLLP + Sbjct: 650 HAMLDGVRDLGLR-LSPAAARLATRVELLRAEG----RDLPDFSEEGLMAKLEDWLLPMI 704 Query: 670 TGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAV 729 +G+ S KS D ALR +L W Q LD ++P + P G +I I Y + P +AV Sbjct: 705 SGMRSDADWKSFDALPALRAVLTWDQTQMLDRDVPGSFVTPLGRKIPIDY-DGEIPGIAV 763 Query: 730 RMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPK 789 R+QE+FG +PT+A V L + LLSPA+RP+QITRDL FW G+Y +V+K+M+ +YPK Sbjct: 764 RLQEVFGVTRHPTVAG--VALKVTLLSPARRPIQITRDLPGFWAGSYADVRKDMRAQYPK 821 Query: 790 HVWPDDPANTAPTRRTK 806 H WP+DP T R + Sbjct: 822 HPWPEDPTKAEATLRAR 838 >UniRef50_Q31I73 DEAH-box ATP-dependent helicase HrpB n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31I73_THICR Length = 848 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 334/848 (39%), Positives = 480/848 (56%), Gaps = 65/848 (7%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ A+LP+L LD V+L A GAGKST +PL LL + G KII+LEPRRL Sbjct: 1 MKELPIHALLPQLRQGLDTHSNVILQADPGAGKSTAVPLALLDSSWLAGRKIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A +++A LA L E G +GY++R + NT LE+VTEGVLTR +Q DPEL+ V L Sbjct: 61 AVKSIAYYLASQLGEPVGQRIGYQIRHERKGSSNTVLEIVTEGVLTRRLQADPELNDVAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA----PVVI 175 +I DEFHERSLQADLALAL L+VQ LR+DLKLLIMSAT+D L+ + A V+ Sbjct: 121 IIFDEFHERSLQADLALALCLEVQSALREDLKLLIMSATMDLTPLKTLFNRATTSVSVLQ 180 Query: 176 SEGRSFPVERRYLP--LPAHQRFD--DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 S GR FPV YL L + D A+ + L + +L+FL G +I+R+Q+Q Sbjct: 181 SAGRVFPVSVTYLSSALKSSHPADWMPALQGLIRKALSETEQDILVFLAGQSDIRRLQKQ 240 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L + D ++ L+G LSL +Q A+LP Q RK+VL+TN+AETSLTI+GI V D Sbjct: 241 LEDSLSEDFVIRCLFGGLSLEEQELALLPDAQKRRKIVLSTNLAETSLTIDGIGAVADSG 300 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R A +D +G+T L TQR+SQAS QR GRAGRL G L + Q + EPE Sbjct: 301 FTRKALYDVSSGMTTLTTQRISQASAEQRKGRAGRLFSGKCYRLWTESQQAQLLPFEEPE 360 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQK 410 I QSDLS + +EL QWG S P ++ WL PPV + AAK LL LG L E ++ GQK Sbjct: 361 ITQSDLSDVCLELAQWGVSSPTELMWLTPPPVPHYEAAKTLLISLGLLSEAGAVTELGQK 420 Query: 411 MAALGNDPRLAAMLVSAK------NDDEAATAAKIAAILEEPPRMGNSDLGVAFSR---- 460 G RLA ML+ A+ A A +AAIL E + S+ R Sbjct: 421 SITFGLPSRLAKMLLVAEQVTTLDKGTAQALACDVAAILAERDVLSFSEGADLVKRLLAL 480 Query: 461 ------NQPAWQQRSQQL-------------LKRLNVRGGEADSSLIA---------PLL 492 + A + S QL LKRL GG+A + ++ L+ Sbjct: 481 QAYREDRKQARRTYSMQLSAMTQALKNAENWLKRL---GGDAKNMALSLTELQRNAGALV 537 Query: 493 AGAFADRIA-RRRGQDGRYQLANGMGAMLDANDALSRHEWL-IAPLLLQGSASPDARILL 550 A A+ +R+A +R+GQ RY + NG G L +D+L WL IA + + ++ L Sbjct: 538 AMAYPERLAQKRKGQGVRYVMRNGKGVCLRKDDSLQSSSWLAIASV---DGKRQEGQVYL 594 Query: 551 ALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQ 610 A + +D + + V+ +D+ + + + +G+L + + L+ P ++ + Sbjct: 595 ATSITLDTIKHLFSKQVEHKKAYRFDEEKKEISGREQTCLGKLLLDEKALSAPDQEAIQS 654 Query: 611 AMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY--DWPAVDDESLLAALETWLLPH 668 ++ I +K L++L+W ++ R+ +WL +Y + P L + + TWLLP+ Sbjct: 655 CLMAAI-EKDLTLLSWPSKTVDWLNRI----RWLAQYCEEVPDFSQAWLKSNIATWLLPY 709 Query: 669 MTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALA 728 + V S++ L+ LD++ L+ L + +QQ L+ + P +Y P+ + I Y +N P ++ Sbjct: 710 LNEVSSVKALQKLDVFALLQAQLPYDVQQSLEQQAPRYYKTPSQKLVPINY--ENHPTVS 767 Query: 729 VRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYP 788 V +QE+FGE ++P +A G+V L ELLSPA+RP+Q+T DL++FW+ +Y EV+KEMKGRYP Sbjct: 768 VVLQEVFGELSSPKLAWGQVSLTFELLSPARRPIQVTSDLANFWRTSYFEVKKEMKGRYP 827 Query: 789 KHVWPDDP 796 KH WPD+P Sbjct: 828 KHRWPDEP 835 >UniRef50_Q2RRT0 ATP-dependent helicase HrpB n=19 Tax=Bacteria RepID=Q2RRT0_RHORT Length = 860 Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust. Identities = 366/836 (43%), Positives = 488/836 (58%), Gaps = 37/836 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+ VLP LL AL + +L AP GAGK+T +P LL + G K+++LEPRRLA R Sbjct: 25 LPIDPVLPALLEALASHGRAVLIAPPGAGKTTRVPPALLGALWLGGQKVVMLEPRRLATR 84 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+R+A E G G+R+R ++ GP TR+EV+TEG+LTR IQ DPEL+GVG VIL Sbjct: 85 AAARRMAFEAGEAVGQRFGFRVRGESRSGPLTRVEVMTEGILTRRIQDDPELAGVGCVIL 144 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER LQ DLA ALL ++Q LR DL+LL+MSATLD + ++ +APV+ S GR+FP Sbjct: 145 DEFHERGLQGDLAFALLREIQGALRPDLRLLVMSATLDGAAIAALMDDAPVIESHGRAFP 204 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V + PA + A+A L E GS+L FLPG EI V LA + +D +L Sbjct: 205 VTITHGERPAARDLGPAMARTILRALEDEPGSVLAFLPGEREIAAVAGALARALPADTVL 264 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYGAL +Q AI P P G RKVVLAT+IAETSLTIEG+R+VVD R RFDP+T Sbjct: 265 RPLYGALPPAEQDAAISPCPPGQRKVVLATDIAETSLTIEGVRIVVDSGLRRSPRFDPQT 324 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL+RL T R+SQA QR GRAGRLEPG+ L L + + AQ PEIL +DL+ L + Sbjct: 325 GLSRLDTVRISQAGAEQRRGRAGRLEPGVCLRLWPEAEHRALPAQETPEILAADLAPLAL 384 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLA 421 EL +WG D A + W PP L A+ LL LGALE LSA G MAAL PRLA Sbjct: 385 ELARWGARDAAALCWPTPPPPGPLAQARDLLTSLGALEPAGGLSAHGAAMAALPLHPRLA 444 Query: 422 AMLVSAKND--DEAATAAKIAAILEE-------PPRMGNSDLG------VAFSRNQPAWQ 466 M+++AK D D+ A A +AA+L E P + DL + R PA Q Sbjct: 445 HMVLAAKADGADDGALACLLAALLAERDILRPGPGAARDRDLTTRLEILIGQGRRAPAGQ 504 Query: 467 QRSQQLL-------KRLNVRGGEADSSLIAP-----LLAGAFADRIARRR-GQDGRYQLA 513 Q L RL G A S+ P +LA A+ DRIA+ R GQ GR+ L+ Sbjct: 505 ILRQPTLGAVRDEAARLRQLAGIAASASPEPARCGRVLARAYPDRIAQARPGQPGRFLLS 564 Query: 514 NGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTV 573 +G GA++D D L+ +L + G+ S +AR+ LA +D +L + + ++ +TV Sbjct: 565 SGRGALIDVGDPLAAAAFLAV-AEVDGAGS-EARVFLAAPLDRADLEELFDEALRPCETV 622 Query: 574 EWDDAQGTLKAWRRLQIGQLTVKVQPL---AKPSEDELHQAMLNGIRDKGLSVLNWTAEA 630 WD + A ++G L + + L A P+ A+ GIR GL L WT E Sbjct: 623 TWDPRAEAVVARVERRLGALVFESRDLPDRADPARTT--PAVCAGIRRLGLGCLPWTRET 680 Query: 631 EQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGL 690 ++LR R+ + DWP + D++LLA+L WL P + G+ +D+ AL+ L Sbjct: 681 DRLRARVAFLHRVHSADDWPDLSDDALLASLADWLGPWLDGITRRSAFARIDLMAALKAL 740 Query: 691 LDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPL 750 + W LD PA VP+G ++A+ Y + P LA R+Q++FG P + G P+ Sbjct: 741 IGWRRLADLDRLAPAQMDVPSGVKVALDYEVPDGPVLAARVQQLFGLTRTPAVLDGGHPV 800 Query: 751 VLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 ++ LLSPA RPLQ+TRDL+ FWKG+Y EV+K+M+GRYPKH WP+DP T R K Sbjct: 801 LVHLLSPAGRPLQVTRDLAGFWKGSYAEVRKDMRGRYPKHPWPEDPTGAEATNRVK 856 >UniRef50_A1SSH4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=A1SSH4_PSYIN Length = 835 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 312/839 (37%), Positives = 472/839 (56%), Gaps = 42/839 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAAR 62 LP+ +P++ L P ++L A GAGKST +PL LL P + GK IILLEPRR+A + Sbjct: 2 LPIDDFIPQIQETLSQHPALVLQAEPGAGKSTAVPLSLLGSPFLKGKKIILLEPRRVAVK 61 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 ++A LA+ L EK G VGY++R + + +T LE+VTEGVLTR +Q DPELS VGL+I Sbjct: 62 SLAFYLAKQLGEKVGQRVGYQVRNERKISADTVLEIVTEGVLTRRLQNDPELSDVGLIIF 121 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERS+ ADLAL L L+VQQ RDDL LL+MSAT+D D L L APV+ GR++P Sbjct: 122 DEFHERSIHADLALMLALEVQQAYRDDLTLLVMSATIDTDLLANYLNHAPVIKCPGRTYP 181 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQLASRIGSDVL 241 VE Y+ D V A +L + S G +L+FLPG GEI+R + ++GS+ Sbjct: 182 VEIEYIS-NTQGYLDQQVMKALNTVLNETSAGDILIFLPGQGEIKRAIQLAKQQLGSNFD 240 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 L PLYG LSL+ Q + ++V+ +TNIAETSLTIEGI V+D E+V FD + Sbjct: 241 LLPLYGGLSLSQQELVLSKKSGSQQRVIFSTNIAETSLTIEGISTVIDSGLEKVLSFDVK 300 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 +GL+RL T +S+AS TQRAGRAGRL+ G ++ L ++ + + EI +DLS L+ Sbjct: 301 SGLSRLETTSISKASATQRAGRAGRLQRGRAIRLYSEAKHQGLKDFQAEEITNTDLSSLV 360 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRL 420 ++L WG + A+++WL PP + A L +LG L+ + +++ QG + +G DPRL Sbjct: 361 LDLAAWGITSFAKVNWLTPPPEHHFNVACSLNCVLGLLDAQNKITKQGTRALKMGLDPRL 420 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRM---GNSD-LGVAFSRNQPAWQQRSQQLLKRL 476 A+ML+S ++ E A + A+L E + G+SD + A N +++ + + + Sbjct: 421 ASMLLSCQSTLEKRIACVLGALLSERDILFNAGSSDIIERAMLFNDYLADRKALKANRNI 480 Query: 477 NVRGGE-------------ADSSLIAP------------LLAGAFADRIAR-RRGQDGRY 510 N+ E SSL P LL A+ DR+A+ R + RY Sbjct: 481 NIGVVEQVVTLAKSFAKSLGLSSLGEPVSLTELNHYAGALLLTAYPDRLAKIRSAKSNRY 540 Query: 511 QLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 LANG G L D++ WL+ + + D I V I ++ + ++ Sbjct: 541 LLANGRGVTLREMDSVQGELWLV--VCDCDGKNKDGNIYSCAAVSIPQIKTVLADQLTEN 598 Query: 571 DTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEA 630 D + + ++L L ++ Q L++ ++E Q + + ++ +GL+ LNWT+ Sbjct: 599 SHYALDTKKEKVIGRQKLTYRALVLEEQLLSEIPDNEFAQCVADLLKQEGLAFLNWTSRC 658 Query: 631 EQLRLRLLCAAKWLPEY--DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688 R+ KWL D+P + + +L+ L+ WLLP++ + +++ L+ I L Sbjct: 659 ASWLARV----KWLSSVMTDFPQISETTLIEQLDNWLLPYIGRIKTIKQLRQFQIVDLLM 714 Query: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748 L + Q L ++ Y P+G I IRY + P +++ +QEMFG+ +P +A + Sbjct: 715 ATLTFQESQTLAAQAAEFYEAPSGKSIPIRYDQQQGPTVSIILQEMFGQLDSPMLANNTI 774 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 P+ ELLSPA++P+Q T DL++FW +Y +V K+M+GRYPKH WP+ P P R KK Sbjct: 775 PIRFELLSPARKPIQTTSDLANFWCTSYFDVAKDMRGRYPKHRWPEAPLLELPGRSIKK 833 >UniRef50_UPI0000E0EA09 ATP-dependent helicase HrpB n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0EA09 Length = 885 Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust. Identities = 330/889 (37%), Positives = 479/889 (53%), Gaps = 98/889 (11%) Query: 3 SLPVAAVLP---ELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRL 59 SLP+ +L E+LT DC V+L+A GAGKST +PL LL+ + GKI++LEPRR+ Sbjct: 5 SLPIHGILSTLHEILTVDDC---VVLAAQPGAGKSTQVPLSLLSASWVTGKILILEPRRV 61 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A +++A LA L E G TVGY++R + V TR+EV+TEG+LTR +Q DPEL+ V + Sbjct: 62 AVKSIAHYLAYQLGESVGHTVGYQIRHERNVSQQTRIEVITEGILTRRLQSDPELADVSV 121 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHER++ ADLAL L +VQ+GLRDDL++L+MSAT+D + L A V+ GR Sbjct: 122 VIFDEFHERAVHADLALLLCREVQEGLRDDLRVLVMSATMDTLSVSDYLGGARVIDCPGR 181 Query: 180 SFPVERRYLP--LPAHQRFD------------DAVAVATAEMLRQESGSLLLFLPGVGEI 225 SFPVE Y P L HQ + DA+ A ++ + G +L+FLP G I Sbjct: 182 SFPVEISYHPPKLSKHQSMNRLSNRDIASMVSDALEHALVQL--SDHGDVLVFLPSQGAI 239 Query: 226 QRVQEQLASRIG--SDVLLCPLYGALSLNDQRKAILPAPQGM------------------ 265 Q +R+ S + LYGA+SL+ Q + I P+ Sbjct: 240 HAAMNQCETRLKDQSKIACYALYGAMSLSAQEEIIRPSSALYSPASSSSATASESVSSNP 299 Query: 266 -RKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRA 324 R+++ ATNIAETS+TI + +V+D E+ A FD ++GLT+L+TQR++++S QRAGRA Sbjct: 300 PRRIIFATNIAETSVTIPNVTMVIDTGLEKSALFDVKSGLTKLVTQRIAKSSADQRAGRA 359 Query: 325 GRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVV 384 GR++ G + L ++ Q + A + I +DLS +EL WG DP +WLD PP Sbjct: 360 GRVQAGHCIRLWSETQQYQLADFAPLAINNTDLSAFTLELSAWGIHDPLAANWLDTPPTA 419 Query: 385 NLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 ++ A +L L ++ + +LS +GQ++ +G +PRL AML+SA + E A A +AA+L Sbjct: 420 HIEHALQLNTSLALIQSQGQLSTKGQQLLDMGIEPRLGAMLLSADSTVEQALACVLAALL 479 Query: 444 EE-----PPRMGNSDLGVAF-------------SRNQPAWQQRSQQLLKR---------- 475 E P GV SR+ QQL R Sbjct: 480 TERDIANDPAFVQQHFGVDVLARLSAVIHTLITSRSSKGSLHHIQQLALRWFGQITGNIQ 539 Query: 476 --------LNVRGGEAD-SSLIAPLLAGAFADRIARRRGQDG------RYQLANGMGAML 520 + G +D +++ A L A AF DRIA+RR D Y +ANG G L Sbjct: 540 TTHSRQAFYDALGQISDVATMSARLCAVAFVDRIAKRRAADPDLSQKISYTMANGRGVSL 599 Query: 521 DANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQG 580 N+ L+ WL+ ++ + D R+ LAL V ++Q V + E+ A Sbjct: 600 MPNEPLASSLWLV--IVDCDGQNNDGRVFLALAVSEAVIMQL--DSVNTENVYEYSVANN 655 Query: 581 TLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 + R+ +IGQL + PL+ ++ L + + ++GL L W EQ LR+ Sbjct: 656 KITGRRQTRIGQLVINETPLSTIPDEVLIPCFMQVVAEQGLRFLQWDKRCEQWSLRV--- 712 Query: 641 AKWLPEY---DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 +WL EY + P +D+ LL L WLLP+ G+ ++R L+ L + L +L + QQ Sbjct: 713 -QWLAEYCPDELPLIDEAYLLGHLNDWLLPYCHGIKTIRQLQQLALMPLLEAILTYEQQQ 771 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 L P YT P+G I Y + P++ + +QEMFG+ T+P +A G+VPL LLSP Sbjct: 772 FLAKHAPVKYTAPSGLSCHITYSKHQAPSVHIVLQEMFGQLTSPLLANGQVPLCFTLLSP 831 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 A+R LQ T DL+ FW +Y +V+K+MKGRYPKH WP+ P P R K Sbjct: 832 ARRDLQTTSDLAHFWTHSYFDVRKDMKGRYPKHRWPEKPLEERPGRSIK 880 >UniRef50_D1N9R3 ATP-dependent helicase HrpB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9R3_9BACT Length = 824 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 362/824 (43%), Positives = 490/824 (59%), Gaps = 29/824 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 S LPV +VLPEL++AL+ +LSA GAGK+T +P LL A +GKI+LLEPRR+A Sbjct: 8 SDLPVRSVLPELVSALERHGSAVLSAAPGAGKTTLVPPALLEAFAPASGKILLLEPRRVA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A +L E G+ VGY +R + TR+ VVTEGVL R++Q DP L GVGLV Sbjct: 68 ARAAARRIASILGEPVGERVGYVVRGDSKQSARTRILVVTEGVLLRLLQDDPMLDGVGLV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL ADL LAL LD+++ LR +LKL+IMSATLD R+ +L APV+ + GR Sbjct: 128 IFDEFHERSLDADLDLALTLDLRENLRPELKLVIMSATLDLARVAGILGGAPVIDAPGRQ 187 Query: 181 FPVERRYLPLPAHQRFDDAVAVATA--EMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPVE+R+ A RF A AVA A + ++++G +L+FLPG+ EIQ V L S + + Sbjct: 188 FPVEQRW-SAEAVDRFRPAPAVARACIGLYKEKAGDMLVFLPGMREIQEVAAMLESALPA 246 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 D L+ PL+G+LS +Q A+ P P G RKVVLATN+AE+SLTI+G+ LVVD ER RF Sbjct: 247 DALILPLHGSLSPAEQDAALAPTPPGRRKVVLATNVAESSLTIDGVTLVVDSGLERRMRF 306 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 P G++ L T R+S+AS QRAGRAGR PG +L L ++ + A Q+ PEI ++L+ Sbjct: 307 SPAAGMSFLETCRISKASAAQRAGRAGRTAPGTALRLWSEFDHRQLAEQTPPEIFDAELT 366 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGND 417 +EL +WG + P Q+ WLD PP AA+RLL+ LGA +G RL+A+G+K+A L Sbjct: 367 SFALELARWGAT-PEQLRWLDAPPAAGFAAAQRLLRELGAFDGANRLTARGRKLAGLPVH 425 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFS-------------RNQPA 464 PRL ML++A E AA+IAA+LEE + D GV RNQ Sbjct: 426 PRLGMMLLAAAERGETPLAAEIAALLEERDSFRSFD-GVDLGERIRRMRRRPGEFRNQLV 484 Query: 465 WQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDAN 523 + +QLL + E D L A AF D I R R + R Y L+ G GA L N Sbjct: 485 IK---KQLLGLMKAPDRELDPDRSGVLTAFAFPDWIGRARSRHSRSYLLSGGAGASLPEN 541 Query: 524 DALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583 D L R E+L A L GSA D+RI LA +D EL + + VE+D + Sbjct: 542 DVLCRSEFL-AVARLTGSAGRDSRIELAAPLDRAELEAAFADRLAEHTAVEFDPERERAV 600 Query: 584 AWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE-AEQLRLRLLCAAK 642 A R ++G L + A+P + A+LN ++G+ + + A L ++ AA+ Sbjct: 601 ARRETRLGALVLSAA-PAEPPPGAIPAAVLNAALERGIELPPSDQKGAAALLKKVRFAAR 659 Query: 643 WLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSE 702 P +P ES L LP + V S L+ D + L+ L + + + L+ E Sbjct: 660 QEPNR-YPDWSPESWQTVLPGLALPFLGAVRSFAELRKADWHTILQNALGYDLLRELNQE 718 Query: 703 LPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPL 762 P +T P G+ I Y + P L VR+QE++G T+PT+ + + PL LELLSPA RP+ Sbjct: 719 YPDFFTTPVGASHRIDYDREQ-PTLPVRVQELYGVKTHPTVGRSKFPLRLELLSPAHRPV 777 Query: 763 QITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 Q+T DL FW G+++ VQKEMKGRYPKH WPDDPA+ PT RTK Sbjct: 778 QVTTDLPGFWAGSWKLVQKEMKGRYPKHFWPDDPADAVPTTRTK 821 >UniRef50_D2UGH8 Probable atp-dependent rna helicase protein n=1 Tax=Xanthomonas albilineans RepID=D2UGH8_XANAL Length = 886 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 346/870 (39%), Positives = 474/870 (54%), Gaps = 81/870 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAAR 62 P+ +LP++ +L P+++L AP GAGK+T +P LL P + G+ I++LEPRR+AAR Sbjct: 27 FPIDPLLPQIRDSLAAHPRLVLEAPPGAGKTTQVPPALLDAPWLQGRRIVMLEPRRVAAR 86 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 + A +A E PG+TVGYR+R +N V TR+EVVTEG+LTRM+Q DP L GVG ++ Sbjct: 87 SAATFMARQRGEAPGETVGYRIRFENKVSARTRIEVVTEGILTRMLQDDPLLDGVGALLF 146 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER L ADL LAL LDVQ +R+DL++++MSATLD +RL Q L +AP + S GRSFP Sbjct: 147 DEFHERHLAADLGLALALDVQAQVREDLRIVVMSATLDGERLAQFL-DAPRLSSAGRSFP 205 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE------------ 230 VE + P + + A L+Q G +L+FLPG EI RV+ Sbjct: 206 VEIAHFPARREESLEVQTRRAIDHALQQHPGDVLVFLPGQREIARVKAALEAGGIATGSS 265 Query: 231 ----------------------QLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKV 268 + + G DVL PL+G L + Q K + P G R+V Sbjct: 266 ADAIVTHPAAAPSAHDAVHTALHMGATHGVDVL--PLHGELPVEQQSKVLQADPHGRRRV 323 Query: 269 VLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLE 328 VLATN+AE+S+T+ G+R+V+D R +DP +G +RL ++QAS QRAGRAGR+ Sbjct: 324 VLATNVAESSVTLPGVRVVIDAGLAREPHYDPNSGFSRLDVTTITQASADQRAGRAGRVA 383 Query: 329 PGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLA 388 G + L Q++R AQ EILQ +L+ L +EL WG + ++D PP L A Sbjct: 384 SGWAYRLW--PQSQRLEAQRRAEILQVELASLALELAAWGSDG---VRFVDPPPAGALAA 438 Query: 389 AKRLLQMLGALEGERL-SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE--E 445 A+ LLQ LGAL+ ++ +A G++M ALG PRLAAML++A + A A +AA++E + Sbjct: 439 ARELLQRLGALDANQIITAHGRRMLALGTHPRLAAMLLAATDARAQALACDLAALIEARD 498 Query: 446 PPRMG-----------------------NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGE 482 P R G + D A W++R L+ V Sbjct: 499 PLRQGGDALAARWRALAAFRRGRVPHDAHRDGLAAIDAAATQWRRR----LRGKAVAPES 554 Query: 483 ADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHEWLIAPLLLQGS 541 D+ ++ LLA AF DRI R D RY LANG A L + L WL+A L + Sbjct: 555 VDAHVLGDLLAHAFPDRIGVRHPHDPLRYLLANGRSARLFEHSELRGEPWLVATELRHEA 614 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA 601 DA +L A VD L + PQ Q D V WD + L A R + ++ + +P Sbjct: 615 K--DALLLRAAPVDETSLRAQFPQRFVQQDVVRWDAERRALSALRESRFDRIVLDSRPAG 672 Query: 602 KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAAL 661 + A+ +R+ GL VL W+ + Q R R+ W+PE D P + D +LL +L Sbjct: 673 RVDPAHAATALTEAVRELGLQVLPWSEDLRQWRARVAGLRAWMPELDLPDLSDTALLDSL 732 Query: 662 ETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHE 721 E WL P G L L + +AL+ L W +Q +D P VP+G I Y Sbjct: 733 EDWLRPAFVGKTRLDALGEDALAEALKTRLPWDRRQAIDRHAPTRIAVPSGMERRIDYAL 792 Query: 722 DN-----PPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAY 776 D+ PP LAV++QE+FG A P IA RVPLVL LLSP RPLQ+T+DL +FW Y Sbjct: 793 DHAGQPQPPVLAVKLQELFGLADTPRIADSRVPLVLHLLSPGGRPLQVTQDLRNFWSNTY 852 Query: 777 REVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 EV+KEMKGRYP+H WPDDP + R K Sbjct: 853 PEVKKEMKGRYPRHPWPDDPWTATASHRAK 882 >UniRef50_B4X2F5 ATP-dependent helicase HrpB n=1 Tax=Alcanivorax sp. DG881 RepID=B4X2F5_9GAMM Length = 818 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 338/819 (41%), Positives = 466/819 (56%), Gaps = 24/819 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 + PV + LL AL + +L AP GAGKST +PL LL + G GKI++LEPRR+A Sbjct: 3 TDFPVDQAINPLLQALKAHGRAILEAPPGAGKSTRVPLALLDSEWGQRGKILMLEPRRVA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA +A E G +VGYR R V T LEV TEGVLTRM+ DPEL GV LV Sbjct: 63 ARSVATFMASQRGEAVGQSVGYRTRTDTRVSARTHLEVATEGVLTRMLLNDPELPGVSLV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL ADL LAL+L+ + R DL LL+MSATLD L+ +L +APVV SEG+S Sbjct: 123 IFDEFHERSLNADLGLALILEASEAFRPDLGLLVMSATLDCGPLETLL-QAPVVRSEGQS 181 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PV Y P+PA Q + + A ++ ++G +L+FLPG +++RV QL R V Sbjct: 182 YPVSVAYAPVPARQDWRNHCAEQVMSLI-GDAGVMLVFLPGQSDMRRVASQLNQR-SCPV 239 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+G LSL+ Q++ I A +VL TN+AETSLTIEG+ VVD R +D Sbjct: 240 PVVTLHGGLSLDKQQRVIALAASEPHLIVLTTNVAETSLTIEGVTHVVDSGFAREPVYDA 299 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 TRL+T+R+S+A+ QR+GRAGRL PG SL L +A+ A PEI + L L Sbjct: 300 ARHRTRLVTRRISEANARQRSGRAGRLGPGHSLRLWG--EADVLARYQLPEIQRVGLDRL 357 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 +++L +WGC +P QM WLD PP +A LQ GAL+ L+A+G+ +A L DP Sbjct: 358 VLDLARWGCHEPQQMPWLDAPPQAAWDSAVERLQRGGALDDSGSLTARGEAIARLPVDPA 417 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQL------L 473 LA +L++AK A AA++ A+L E + GV R A + Q+ Sbjct: 418 LALLLIAAKEAGLAEPAARLVAVLSERDILAGE--GVDLRRRLEALENHPQRFATVLAEA 475 Query: 474 KRLNVRGGEADSSL---IAPLLAGAFADRI-ARRRGQDGRYQLANGMGAMLDANDALSRH 529 KRLN +A + LLA FA +I RR G GRYQ+A+G G L ND+L Sbjct: 476 KRLNAGNDQASQGWRDGMGGLLASVFALQISRRRSGSRGRYQMADGPGLFLHDNDSLQGT 535 Query: 530 EWLIAPLLLQGSASP-DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 EWL L++ P DARI LA + +E+ Q + + + WD + + R Sbjct: 536 EWL---LVMDTDGQPRDARIRLAWPLTDEEIESVLEQHGRWREHIGWDTEKQRVTGRRER 592 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD 648 +G L ++ Q LA ++ +L GIR GL+VL W A Q + R+ + P+ Sbjct: 593 VLGNLVLQSQTLASLDSEQQIAGLLAGIRSLGLAVLPWEAHWRQWQARIQRLSAIQPDAG 652 Query: 649 WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYT 708 WP V D L+A+LE WL P++ G+ S+ LK L + AL LL Q+ L +P T Sbjct: 653 WPDVSDAGLMASLEEWLAPYLAGMRSVADLKKLPLGAALSSLLSVDQQRHLKQWMPETVT 712 Query: 709 VPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDL 768 +PTG + + Y ++ LA ++QE+FG P +A G + + + LL+PA RP IT +L Sbjct: 713 IPTGRSVRLDYTGEH-VVLAAKLQELFGLQALPPLADGALAITVHLLTPAGRPAAITDNL 771 Query: 769 SDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 + FW Y V+K+++GRYPKH WP+DP PT TKK Sbjct: 772 ARFWAENYAAVRKDLRGRYPKHPWPEDPLQAIPTAVTKK 810 >UniRef50_Q6ALG3 Related to ATP-dependent helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6ALG3_DESPS Length = 840 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 317/838 (37%), Positives = 461/838 (55%), Gaps = 40/838 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 +S+ P++AVL L +L A +L +PTG+GK+T P+ LL ++GK I +LEPRR+ Sbjct: 10 LSNYPISAVLDSLQESL-AAGHTVLKSPTGSGKTTIAPITLLGQDWLHGKKIYMLEPRRV 68 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A R++ LL E+ G TVGY R NT++ +VTEGV + IQ+D EL+ +GL Sbjct: 69 AARAAAYRMSSLLGERIGQTVGYITRYSKEFSANTKIFIVTEGVFLKTIQKDQELTDIGL 128 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE+HERSL L LR+D +LL+MSATLD+++L ++L A +V S G+ Sbjct: 129 VIFDEYHERSL-IADLCLALCLDLATLREDFRLLVMSATLDSEKLAKLLDNARIVESAGK 187 Query: 180 SFPVERRYLPLPAHQR--FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 SFPV Y P PA + +V A + L G +L FLPG+ +I+ V+ +L S IG Sbjct: 188 SFPVSVIYQP-PATEFTPLSMSVTSAISYALANYEGDILTFLPGIADIKSVERELES-IG 245 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 ++V + PLYG L + Q K + P R+VVLAT +AETSLT++G+R +VD + Sbjct: 246 NNVKILPLYGDLPIEQQDKILAPKQNRQRRVVLATPVAETSLTVDGVRCIVDSGLHKHPV 305 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 ++P+ GLT L+T R+S+AS QR GRAGR G+ + L ++ A + PEI +DL Sbjct: 306 YNPKNGLTSLVTSRISRASAEQRRGRAGRQNSGMCIRLWDEKIHHGLLAFTPPEICNADL 365 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGN 416 + L++EL WG +D Q+ WLD P A +LL L AL + ++ G+K+ Sbjct: 366 TSLVLELAHWGVNDAKQLKWLDPPGKGAWEKAVKLLTQLSALNKKGEITDIGRKLRKFPL 425 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGV-------------------- 456 PRL+ ML+ A T +A IL E D G+ Sbjct: 426 HPRLSYMLLKATELSLGLTGCYLAGILSERDIFQGHDNGIDIRDRIKALSSLSNRSSSYS 485 Query: 457 --AFSRNQPAWQ--QRSQQLLKRLNVRGGEA-DSSLIAPLLAGAFADRIA-RRRGQDGRY 510 A Q Q Q+ +Q K L +R E +S LL + DRIA R QD + Sbjct: 486 GRANLNTQVCKQILQQVEQWRKTLGIRWAETINSEETGNLLCFCYPDRIAIGRSQQDSTF 545 Query: 511 QLANGMGAMLDANDALSRHEWLIAPLL-LQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 QLANG A + A D+L+ + ++A + ++G + +I LA + EL + P L+ Sbjct: 546 QLANGRQARISAQDSLNNSQIIVAAKVDVRGG---NGKIFLAAPTTLMELEKNHPDLIST 602 Query: 570 SDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE 629 SD + WD + ++A R IG + +P++ +D +L GI++ G L W+ Sbjct: 603 SDHIRWDKKELAVQARRETFIGLAKISSKPISLQDKDVALTLLLKGIQETGSEALPWSKS 662 Query: 630 AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 + +L+ RL + + +W DE+L+ L TWL P G ++ L+ +D AL Sbjct: 663 SRELQARLQTLFNY-DQNNWQDFSDEALIQDL-TWLEPFCYGFTKVQQLRDIDFQSALLA 720 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 L + QQ L + P H VP+GS I I YH + P LAVR+QE+FG PTI G +P Sbjct: 721 KLSYNKQQLLQTLAPTHTKVPSGSNIKITYHLGDEPRLAVRLQEVFGMCDTPTICGGSLP 780 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 L L LLSPA+R +QIT+DL FW+ Y E++KE+ GRYPKH WPD+P T RTK+ Sbjct: 781 LTLHLLSPARRSMQITKDLKSFWQRTYPEIKKELAGRYPKHYWPDNPLEAQATSRTKR 838 >UniRef50_D0D680 ATP-dependent helicase HrpB n=1 Tax=Citreicella sp. SE45 RepID=D0D680_9RHOB Length = 866 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 344/838 (41%), Positives = 489/838 (58%), Gaps = 53/838 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 M+ LP+ LP L+ AL + +L AP GAGK+T +PL +L +I++LEPRRLA Sbjct: 48 MTRLPIDDALPSLIAALRTRGRAVLQAPPGAGKTTRVPLAMLDAGLTTDRIVMLEPRRLA 107 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+AE L E PG+TVGYR+R + V TR+EVVTEG+LTRMIQ DP L+GVG V Sbjct: 108 ARAAAQRMAETLGEAPGETVGYRIRGEAKVSDATRIEVVTEGILTRMIQSDPALTGVGAV 167 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSL ADL LAL L++ LRDDL LL MSATLD + + +++ +AP++ SEGR+ Sbjct: 168 VFDEFHERSLNADLGLALCLEIAGALRDDLLLLAMSATLDAEPVAELM-DAPIITSEGRA 226 Query: 181 FPVERRYL--PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPVE R+L PLP +RF++A+A A + G +L FLPG GEI+R + L R+ Sbjct: 227 FPVETRWLDAPLPKQRRFEEAMADLVARAASETEGGILAFLPGEGEIRRTEALLRKRLPP 286 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQ-GMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 V + L+GA+ QR AI P + G+RK+VLAT+IAETSLTIE IR+VVD + R AR Sbjct: 287 QVRVHTLFGAMEFAAQRAAIRPETERGVRKLVLATSIAETSLTIEDIRVVVDGGRARRAR 346 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP +G++RL+T+RV++A TQRAGRAGR+ PG + L K + EI +DL Sbjct: 347 FDPGSGMSRLVTERVTRAEATQRAGRAGRVAPGTAYRLWTKGEEGAMLPYPPAEIESADL 406 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGN 416 +GL +EL WG P+++ +L P L A+ LL MLGAL E R++ G+ +A L Sbjct: 407 AGLALELALWGAQ-PSELPFLSAPGAGALAEAQALLTMLGALDETGRITEHGKILAKLPL 465 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN-SDLGV---------AFSRNQPAWQ 466 PRL ML A A P +G SDL + F+ ++P Sbjct: 466 HPRLGHMLTLAGPRAADLAALLADRD----PLVGAPSDLALRLEAMTDLRRFTESRP--H 519 Query: 467 QRSQQLLKRLNVR-----------GGEADSSLI-APLLAGAFADRIA-RRRGQDGRYQLA 513 Q ++ L+R+ G L+ A + A A+ DR+ RR+G R+QL+ Sbjct: 520 QVNRAALERIRTEARRLRRQAPRDAGRGYGDLVPAAMAALAYPDRVGLRRKGDAPRFQLS 579 Query: 514 NGMGAMLDANDALSRHEWLIAPLLLQGSASP-DARILLALLVDIDELVQRCPQLVQQSDT 572 G GA+L+ +D L+ ++ + +P +ARI A+ + EL P+ ++ D+ Sbjct: 580 GGKGAVLEPSDPLASARLIV---VTDTDGNPREARIRQAVQITESELRDLFPETIRWQDS 636 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 W + A ++ ++G + + + + + +AML G+R+ GL + + Sbjct: 637 CHWSKRDRRVVARQQERLGAIALDDRAWKDAPSEAIARAMLEGVRELGLPLTDAA----- 691 Query: 633 LRLRLLCAAKWLPE---YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 R CA + D P + + +LL LE WLLP++ GV S K D ALR Sbjct: 692 ---RRFCARAEIGREGGLDLPDMREPALLETLEDWLLPYIEGVRSAEDWKRFDPLPALRA 748 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 LDW QQ LD+ +P +T P G IAI Y ++ P +A+R+QEMFG+ T+P +A R P Sbjct: 749 RLDWAQQQALDAAVPGKFTTPLGREIAIDYSGEH-PEIALRLQEMFGQRTHPMVA--RRP 805 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 L + LLSPA+RP+Q T DL FW G+Y +V+K+MK +YP+H WP+DP PT R K+ Sbjct: 806 LRVTLLSPARRPVQTTMDLPGFWDGSYADVRKDMKAQYPRHPWPEDPREADPTLRAKR 863 >UniRef50_Q0VPK1 HrpB protein n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VPK1_ALCBS Length = 814 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 328/817 (40%), Positives = 470/817 (57%), Gaps = 24/817 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAAR 62 PV + LL AL + +L AP GAGKST +PL LL + G NGKI++LEPRR+AAR Sbjct: 5 FPVDNAIEPLLKALKRYNRTILEAPPGAGKSTRVPLALLDSEWGANGKILMLEPRRVAAR 64 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA +A E G +VGYR R V +TRLEVVTEG+LTRM+ +DPEL GV LVI Sbjct: 65 SVATFMASQRGEPVGRSVGYRTRTDTQVSAHTRLEVVTEGILTRMLLKDPELPGVSLVIF 124 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERSL ADL LAL+L+ + R DL LL+MSATLD L+ +L APV+ SEG+S+P Sbjct: 125 DEFHERSLNADLGLALMLETCEAFRLDLGLLVMSATLDCGPLEHLL-GAPVIRSEGQSYP 183 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V Y+P+ A + + D A ++ +G +L+FLPG G+I+RV QL ++ G + Sbjct: 184 VTVSYVPVSAREDWRDHCAEQVMALV-DTAGVMLVFLPGQGDIRRVASQL-NQCGCTTPV 241 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 LYG L L+ Q++ + A R +VL TN+AETSLTIEG+ V+D R +DP Sbjct: 242 TSLYGGLPLDKQQQVLALAATEPRLIVLTTNVAETSLTIEGVTHVIDSGFAREPVYDPAR 301 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 +RL+T+R+S+A+ QR+GRAGRL PG S+ L K +E A PEI + L L++ Sbjct: 302 HRSRLVTRRISEANARQRSGRAGRLGPGHSVRLWGK--SEVLARYQLPEIQRVGLDRLVL 359 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGNDPRLA 421 +L +WG +P QM WLD PP +A + LQ GAL E L+++G+ +A L DP LA Sbjct: 360 DLARWGSREPQQMPWLDAPPQAAWNSAVQRLQSAGALDENGSLTSRGEAIAQLPVDPSLA 419 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQL------LKR 475 ++L+ A A +AA++ A+L E + GV R A + + Q+ +R Sbjct: 420 SLLIVAGEAGLAESAAQLVALLSERDILPGE--GVDLRRRLEALENQPQRFGAVLAEARR 477 Query: 476 LNVRGGEADS---SLIAPLLAGAFADRI-ARRRGQDGRYQLANGMGAMLDANDALSRHEW 531 L + G ++ + LLA + +I RR G GRYQ+A+G G L +D+L EW Sbjct: 478 LKINNGHSEQRWRDAMGTLLASVYPLQISRRRSGGRGRYQMADGPGLFLHDSDSLQGTEW 537 Query: 532 LIAPLLLQGSASP-DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 L L++ P DARI LA + DE+ Q + V WD + + R + Sbjct: 538 L---LVMDTDGQPKDARIRLAWPLTEDEVEAAQEQHGVWREQVGWDAERQRVSGRRERML 594 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 G L ++ Q L ++ +L GIR GL+VL W Q + R++ A P+ WP Sbjct: 595 GNLVLQSQTLTSLDSEQRITGLLAGIRQLGLAVLPWDESWRQWQARVVRLACVQPDGHWP 654 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 V + LL+ LE WL P++ G+ S+ LK L + AL LL Q++L ++P +P Sbjct: 655 DVSEAGLLSDLEQWLAPYLAGMRSVVDLKKLPLGVALSSLLTLEQQRQLKQDMPESVVIP 714 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 TG + + Y + LA ++QE+FG T P +A G + + + LL+PA RP IT +L+ Sbjct: 715 TGRSVRLDYTGEQ-VVLAAKLQELFGLKTLPALAGGALSITVHLLTPAGRPAAITDNLAR 773 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FW Y V+K+++GRYPKH WP++P + T TK+ Sbjct: 774 FWAENYAAVRKDLRGRYPKHPWPENPLDAQATGLTKR 810 >UniRef50_A5GWY8 HrpA-like helicase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GWY8_SYNR3 Length = 839 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 341/834 (40%), Positives = 479/834 (57%), Gaps = 45/834 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP+ +LP+LL L +++L AP GAGK+T +PL L A P G++++LEPRRLAA+ Sbjct: 7 LPIEPLLPQLLETLRVHGRLVLQAPPGAGKTTRVPLALAAAEPWSQGRVLVLEPRRLAAK 66 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+++A L E G+TVGYR+R +CVGPNTR+E+VT+G+ R++Q DP LSGV V+ Sbjct: 67 LAARQMARSLGEAVGETVGYRVRLDSCVGPNTRVELVTDGLFLRLLQEDPALSGVSAVLF 126 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER + +DLALAL +Q L DL ++ MSATLD + L ++L APV+ SEGR+FP Sbjct: 127 DEVHERGIGSDLALALTWQARQLLVPDLAVVAMSATLDAEPLARLLDNAPVLSSEGRAFP 186 Query: 183 VERRYLPLPAHQR-----FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 VE Y PA + D V A E L + GS+L+FLPG EI+R+ EQL + Sbjct: 187 VETIYAERPAPDQPSPRAIADQVRPAIREALATQQGSVLVFLPGQAEIRRLMEQLQDALP 246 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +DV L PL+G L Q A+ A G RKVVLAT +AE+SLTI+GI +V+D RV+R Sbjct: 247 ADVELTPLFGDLDARAQDAAVAAAAPGRRKVVLATALAESSLTIDGIEVVIDAGWSRVSR 306 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP TGL RL+T++ + A QR GRAGRL PG+ L +R Q +PEIL SD Sbjct: 307 FDPSTGLARLLTEKAAVAQADQRRGRAGRLGPGVCWRLWTAVDQQRRPLQPQPEILSSDP 366 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA-LEGERLSAQGQKMAALGN 416 + L +EL WG ++ ++++LD PP L A+ LLQ LGA L + + +G+ MAALG Sbjct: 367 APLALELALWGSAEGEELAFLDPPPSGPLQQARVLLQELGAMLPNGQPTPRGRAMAALGL 426 Query: 417 DPRLAAMLVSAKNDDEAATAAKI---------------AAILEEPPRMGNSDLGVAFSRN 461 PRL AM++ A + ATA K+ AA+L E + +G Sbjct: 427 HPRLGAMVLRAADLQLPATALKLPPLSAEQRQALACVMAALLGERDPLRQDAVGADLCLR 486 Query: 462 QPAWQQRSQ------------QLLKRLNVRGG-----EADSSLIAPLLAGAFADRIARRR 504 +QR + QL ++L + E ++ + +LA A+ DR+A R Sbjct: 487 LDLLEQRGRAGAIAPIRQLALQLRRQLRLPKSVPLLPEGWAAWVGIVLALAYPDRLALPR 546 Query: 505 GQD--GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQR 562 Q+ G L++G GA L+ D L+ E L+A L ARI LA + L Sbjct: 547 AQERPGVMVLSSGRGAALEPQDPLAASEALVAAHL--DGDRRQARIWLAAPLPRAALELL 604 Query: 563 CPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLS 622 P+ + D VEWDD + + A R+ ++G L + P +P + +L ++ +GL Sbjct: 605 QPEQLLDDDVVEWDDERQQVMARRQRRLGALLLSDAPQPQPDAVAVQAVLLEQLQRRGLQ 664 Query: 623 VLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLD 682 L WT QLR RL + PE WPAVD+ SLLA LE WL PH+ GV S L+++D Sbjct: 665 WLGWTPAQMQLRGRLAFLHQLDPEL-WPAVDEASLLAELELWLGPHLEGVRSAAQLQAID 723 Query: 683 IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPT 742 + AL LDW + +LD P +T+P+G I Y + P L+ R+Q+ FG P Sbjct: 724 LQGALLDRLDWRARSQLDELAPLRWTLPSGRNGRIDYSGEE-PVLSSRLQDFFGLQQTPR 782 Query: 743 IAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 +A GR +++ LLSPA RP +TRDL FW+ Y V+K+++GRYPKH WP+DP Sbjct: 783 LAGGRHAVLVHLLSPAGRPAAVTRDLESFWQQGYPLVRKDLRGRYPKHRWPEDP 836 >UniRef50_Q5QVR0 Helicase, ATP-dependent n=1 Tax=Idiomarina loihiensis RepID=Q5QVR0_IDILO Length = 820 Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust. Identities = 318/829 (38%), Positives = 476/829 (57%), Gaps = 36/829 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 +LP+ +VLPEL A A +V++ AP GAGKST LPL LL GI +G I++L+PRR+A Sbjct: 2 TLPIESVLPELAKAFPAA-RVVIEAPPGAGKSTQLPLFLLQQ-GIADDGLIVMLQPRRVA 59 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A N+A LA+ L E G+ VGY +R + T+L ++TEGVL R +Q DPELSG+G + Sbjct: 60 ALNIAHYLAKQLGEPVGEQVGYTVRGDSKRSKATKLLIITEGVLVRWLQDDPELSGIGTL 119 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----EAPVVIS 176 I DEFHER+L +DL+LAL++D LR DL LLIMSATL + L+ L + V+ S Sbjct: 120 IFDEFHERNLHSDLSLALVIDA-LPLRPDLNLLIMSATLPAENLKLWLENYCDQVQVLRS 178 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 EGRS+PVE Y P ++ + E +L+FLPGV EIQ++ +L+ R+ Sbjct: 179 EGRSYPVEYHYRPASHVTQWLAELPKVVVEAFAAAEKGVLVFLPGVYEIQKIATELSQRM 238 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 ++ PL+G + L QR+ + + + ++++LATNIAETSLT++GI +VVD +ER A Sbjct: 239 PPGTIILPLHGRIPLQQQRQVLKASDE--KRIILATNIAETSLTLDGIDVVVDSGRERRA 296 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 ++ P+ GL++L TQR+++AS TQRAGRAGR + G L A+ A + P++ D Sbjct: 297 QYLPQYGLSQLTTQRIAKASATQRAGRAGRQQAGQCFRLWARSDEHGFADYAPPDVATQD 356 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGN 416 LS L++++L+WG S+ +Q++W QP + AA L G + +L+A+ +++ + G Sbjct: 357 LSALVLDVLRWG-SEVSQLAWFSQPDPGHCAAATDFLASTGLIRQGQLTAKARQLESGGF 415 Query: 417 DPRLAAMLVSAK--NDDEAATAAKIAAILEEP-PRMGNSDLGVAF-----SRNQ-PAWQQ 467 DPR+ + +AK +++ A A++ A LEEP + +DL RNQ P WQQ Sbjct: 416 DPRILLVADAAKMLKNEQQAAMARVLATLEEPQTSIKTADLSERTQQHYQQRNQAPLWQQ 475 Query: 468 RSQQLLKRLNVR-----GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDA 522 R + L ++ + L LL G + DR+A+ +QLA G G + Sbjct: 476 RWRYWLNHFGLKEAAETAEASAEGLAVALLQG-YPDRVAKYDVSRCDFQLACG-GRVSGD 533 Query: 523 NDALSRHEW-LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + L + W +I + + L + D L++ +Q T EW Q Sbjct: 534 SSRLKQPAWAIIFDVTFHEQDTIGRSRCLLPVDDAQALLKEAGIPLQTLQTAEWVGEQQQ 593 Query: 582 LKAWRRLQIGQLTV-KVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL--L 638 L+ R Q+G L + + + S ++ +A +RDKGL LNW+ A+QL+ R+ L Sbjct: 594 LRQITRTQLGSLVLSQTTNSGQVSNEQKAEAFCLWLRDKGLDKLNWSQRAKQLQRRVYWL 653 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 A L YD + D LL +LE W P+ T SL+ L+ D Y+AL D+ QR Sbjct: 654 QQAGELSAYD---MSDAGLLNSLERWTAPYWTNFRSLKQLQQWDPYEALCYFFDYSELQR 710 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 L+S P + PT ++ I Y D+PP + V++QEMFG + +P I R + ++LLSPA Sbjct: 711 LNSACPEWWQTPTERKVFINYL-DDPPRVEVKLQEMFGVSESPKIIDNRQVVTVDLLSPA 769 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 R LQ T DL+ FW+ AY +V+KEM+GRYPKH WP+DP N T +TK+ Sbjct: 770 GRLLQRTNDLASFWQNAYADVRKEMRGRYPKHPWPEDPLNATATFKTKR 818 >UniRef50_A3Y8Y8 ATP-dependent helicase HrpB n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8Y8_9GAMM Length = 872 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 322/867 (37%), Positives = 465/867 (53%), Gaps = 73/867 (8%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+ ++ L L+ + +L A GAGK+T +PL LL P + KI++LEPRRLAA+ Sbjct: 10 LPITQIIEPLRQQLNHHDEAILEAEPGAGKTTCVPLALLDQPWLKQQKILVLEPRRLAAK 69 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 + A R+AELL E G TVGYR+R + V TR+EV+TEG+L R++Q DP L GVGL+I Sbjct: 70 HAAARMAELLKEPLGKTVGYRIRHEQKVSQETRIEVITEGILVRLLQDDPSLEGVGLIIF 129 Query: 123 DEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 DEFHER+L +DLALAL L+ + LR++ LKLL+MSATL+ L++ L + GRS Sbjct: 130 DEFHERNLDSDLALALCLESRDFLREEEPLKLLVMSATLEQASLEKALG-CRRLFCPGRS 188 Query: 181 FPVERRYLPLPAHQ-RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 FPV Y L Q ++ L + G +L+FLPG EI R++ L ++ Sbjct: 189 FPVTVNYQNLSLKQDEILPHLSRTVCHALGHDEGDILVFLPGQSEINRLESSLQDQLADH 248 Query: 240 VLLCPLYGALSLNDQRKAILPAPQ---------GMRKVVLATNIAETSLTIEGIRLVVDC 290 + PLYG L Q +A+L + R+V+LAT IA+TSLTI +++V+D Sbjct: 249 CEVLPLYGKLDFKAQ-QAVLALNKHSDDSSNKANKRRVILATAIAQTSLTIPSVKVVIDS 307 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 R ARFD TGLTRL T++VSQA QR GRAGR G+ +++ R Q++P Sbjct: 308 GLSREARFDANTGLTRLHTRKVSQAESIQRTGRAGRTSEGVCYRWWSEDAQNRFMEQAQP 367 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE---RLSAQ 407 +I+ +DLS L +EL +WG S ++WL P + A LLQ LGALE + +L+A Sbjct: 368 QIITADLSNLALELAKWGASHHQDLTWLTPVPEGHWQQAVGLLQELGALEKQDALKLTAL 427 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD-----------LGV 456 G M+ R+ ++++ E + + A++ E GNS LG Sbjct: 428 GDAMSQFSASARIGRLILAGIAIKENTLSTLLGALIME----GNSGQTQQIDLSEQALGF 483 Query: 457 AFSRNQPAWQQRSQQLLKRLN------VRGGEADSSLIAP--------------LLAGAF 496 NQ + QQLL+++N V E SS +A LLA A+ Sbjct: 484 HTKTNQKV-AKTQQQLLQQMNKLAQSLVNKIEQTSSHLAASDLANFTQEDKISYLLACAY 542 Query: 497 ADRIARRRGQDGR-----YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLA 551 DRIA+++G D Y+LANG A L + A+++ ++IA S ++ LA Sbjct: 543 PDRIAKQQGLDNSSQWQDYKLANGRLAQLHKSQAVAKAGFIIALETGGNSKFNKDQVFLA 602 Query: 552 LLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQA 611 ++ +L + V W L + + +G L + + L++ SE+ A Sbjct: 603 SPLNPHLFKDALHELTSVVEKVSWPKNSERLLSSQDTMVGGLCIVSKTLSQISEEAQTHA 662 Query: 612 MLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKW-----------LPEYDWPAVDDESLLAA 660 + IR GL +LNW A ++R RL + + ++ WP VDD SLL Sbjct: 663 VCQHIRSLGLHLLNWDKAALRIRHRLAFIHQMAESDQPNLPAQITQFQWPKVDDTSLLDT 722 Query: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 LE WL P++ V + L L + L LDW QQ L + P V +G++I + Y Sbjct: 723 LEIWLAPYLASVSTHAKLSQLPLADILLNQLDWNQQQALANLAPESLKVASGNQIRLDY- 781 Query: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 + PP+L V++QEMFG P IA +V +ELLSPAQ+PL IT+DL FW+ AY EV+ Sbjct: 782 QAFPPSLKVKLQEMFGTLKTPEIAGTKVK--IELLSPAQKPLAITQDLEHFWQNAYHEVK 839 Query: 781 KEMKGRYPKHVWPDDPANTAPTRRTKK 807 KEM+GRYPKH WPD+P + +TKK Sbjct: 840 KEMRGRYPKHPWPDNPLEAIASAKTKK 866 >UniRef50_UPI0001B58540 ATP-dependent helicase HrpB n=2 Tax=Actinomycetales RepID=UPI0001B58540 Length = 806 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 339/819 (41%), Positives = 463/819 (56%), Gaps = 30/819 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV AVLP +L+ALD +L AP G GK+T +PL L G++++ EPRRLA Sbjct: 7 LPDLPVRAVLPSVLSALDDHGAAVLVAPPGTGKTTLVPLALNRG---EGRVVVAEPRRLA 63 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A LL E G+TVGY +R V TR+EVVT G+L R +Q DPEL+GV V Sbjct: 64 ARAAAGRMAALLGEPVGETVGYAVRGDRKVSSRTRIEVVTSGLLVRRVQHDPELAGVSTV 123 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER L ADL LALLLDV+ GLRDDL+LL SAT+ + RL +L +APV+ + R+ Sbjct: 124 LLDECHERHLDADLLLALLLDVRAGLRDDLRLLATSATVASGRLAALLGDAPVITAHART 183 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE Y +R + AVA A + L + G +L FLPG GEI R L+S + +DV Sbjct: 184 YPVELSYRAPVRGERPEAAVASAVRKALSEGDGDVLAFLPGAGEIARTSALLSS-LDADV 242 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L PL+G LS Q +A+ P+ R+VVLAT +AE+SLT+ G+R VVD RV R D Sbjct: 243 L--PLHGRLSAARQDEALR--PRDRRRVVLATAVAESSLTVPGVRAVVDSGLARVPRVDH 298 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 R GL L T RVS A QRAGRAGR PG + + + A EPEI ++L+ Sbjct: 299 RRGLAGLATVRVSAAVAEQRAGRAGREAPGRAYRCWPEHEQATLPAYPEPEIRTAELARF 358 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 +EL W D ++W D P L AA+ LL LGA + ++ +GQKMA LG PR Sbjct: 359 ALELACWSTPDGTGLAWWDPPGEGALAAARSLLVTLGATTADGAVTPRGQKMADLGLHPR 418 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPA-------WQQRSQQL 472 LA L+ A AA++ A+L+ + +D+ R + A WQ+ +++L Sbjct: 419 LARALLDGAEAVGARAAAEVVALLDTGATL--TDVEAELRRLRSAHDDAARRWQRDAKRL 476 Query: 473 LKRLNVRG-GEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHE 530 +N + D +L+ L A +R+ARRR G Y +A+G A L + L E Sbjct: 477 AALVNSPAKADPDPALVVAL---AHPERLARRRAGSAPVYLMASGTAAELPSGSGLGDAE 533 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 WL + I LA D V+ P LV + D V WD G + A ++ Sbjct: 534 WLAVAEATRDPGRVHGTIRLAATADETLAVRAAPTLVSEVDEVRWD---GEVVARHVRRL 590 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 G + + +PL P +H A++ G+R +GL +L W+ + +LR RL + L E WP Sbjct: 591 GAIVLSEKPLRNPDPQLVHDAVVAGLRAEGLGLLRWSQDGTRLRERLAFLHRVLGE-PWP 649 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 +V DESLL+ +++WL ++ V L ++D ALRGLL W RLD P VP Sbjct: 650 SVADESLLSDVDSWL--DLSRVRRRADLANVDAGSALRGLLPWPEAARLDELAPDRLEVP 707 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 +GS + Y D P LAV++QE FG P++A GRVP+VL LLSPA RP +T DL Sbjct: 708 SGSHYRVDYQGDQ-PVLAVKLQETFGWTETPSLADGRVPVVLHLLSPAGRPAAVTADLES 766 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 FW+ Y V+ +++GRYPKH WP+DPA PTR T + S Sbjct: 767 FWRTGYAAVRADLRGRYPKHPWPEDPATAKPTRHTTRRS 805 >UniRef50_C8WC01 ATP-dependent helicase HrpB n=3 Tax=Zymomonas mobilis RepID=C8WC01_ZYMMN Length = 837 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 301/830 (36%), Positives = 454/830 (54%), Gaps = 28/830 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV+++ L L ++ AP G+GK+T + LL G+IILL PRRLA Sbjct: 8 LKELPVSSIFEPLAETLRNRSNAVIIAPPGSGKTTAIAPILLQEDWCQGQIILLSPRRLA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A+ A+R+A+++ E G TVGY R ++ +R+ VVT+G+ IQ+DPEL + V Sbjct: 68 AKAAAERIAQIMGEPVGQTVGYLTRMESQRSDKSRILVVTQGIFRHQIQQDPELPNISAV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVI 175 + DE HERSL +D +LAL LDVQ LR DL+L+ MSAT+D R ++ E A ++ Sbjct: 128 LFDEVHERSLDSDFSLALALDVQSALRPDLRLIAMSATMDGTRFSDLMAEEGAGKASLLE 187 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 S+GR +P+ Y + +A L + G +L FLPG+ EI+R L Sbjct: 188 SQGRCYPLHYYYEGRRPDLSIEQNMATVIRRALLENDGGILAFLPGIAEIERTAA-LLEN 246 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + S++LL L+ ++ +Q AI P+G RK+VLA+ IAETSLT++GIR+VVD R Sbjct: 247 LPSNILLYRLHSSVDFREQHAAIQAVPKGYRKIVLASAIAETSLTLDGIRIVVDSGLTRR 306 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 AR+D ++GLTRL+T+RVS+AS QRAGRAGR + G L + + PEI ++ Sbjct: 307 ARYDRQSGLTRLVTERVSRASAEQRAGRAGRQDVGYVWRLWEEAAQVGLSPYDPPEITEA 366 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 DLS L ++ WG + P Q+ W+D PP + A + L+ L A+ + R G+ +AAL Sbjct: 367 DLSALTLDCALWGVT-PNQLRWIDSPPEKAIEEAYKRLENLQAISSDKRPLPHGRDLAAL 425 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVA-----FSRNQPAWQQRS 469 M++ AK A A +A +L E +G D+ + F R + Q++ Sbjct: 426 PMPLPFGHMILKAKAKGWGALAVDVAVLLSERG-IGGMDIDIENRLNRFYREKTLRSQKA 484 Query: 470 QQLLKRLNVRGGEADSSL--------IAPLLAGAFADRIARRRGQDGRYQL-ANGMGAML 520 +QL R + G SS + +A AF DR+A+RR G + A G G L Sbjct: 485 RQLANRWRKQVGLTISSKRDVIEMGDVGACVALAFPDRVAKRRDTKGEQWISAGGRGFRL 544 Query: 521 DANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQG 580 D L++ EWL A QGSA ARIL A + +++ + + V ++ A Sbjct: 545 DPLSPLAQSEWL-AVAEAQGSAQ-SARILSAATLMTEQINALFSEKIVVEQNVRFNFATK 602 Query: 581 TLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 +++ R ++ + + P E+ + A++ ++ GL +L W+ A LR R Sbjct: 603 SVETERLQRLDAIILSRGQDDSPDEEAIASALMAAVQQYGLDILPWSDAALALRERWAFV 662 Query: 641 AKWLPE---YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 A E + + D++LL+ ++ WL P + G L +K+ D+ QAL +L W +Q Sbjct: 663 AAHQSEEKAFSDGGLSDDTLLSKVDEWLYPLLLGCRRLDQIKASDLTQALENILGWQGKQ 722 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 +LD +PA P GS I Y D PA+ VR Q +FG +P + GRV LVL L+SP Sbjct: 723 KLDQWVPARLITPAGSSHVIDYKADGGPAVEVRPQALFGMKKHPMLLNGRVALVLRLVSP 782 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 A RP+Q T++L+DFW G++ + KEM+GRYP+H WP+DPA+ PT RT+K Sbjct: 783 AGRPIQTTQNLTDFWAGSWNMIAKEMRGRYPRHPWPEDPASAEPTLRTQK 832 >UniRef50_Q0RIL0 HrpA-like helicase, ATP-dependent n=12 Tax=Bacteria RepID=Q0RIL0_FRAAA Length = 902 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 333/833 (39%), Positives = 454/833 (54%), Gaps = 60/833 (7%) Query: 24 LLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYR 83 +L AP G GK+T +PL L + G++++ +PRR+A R A+R+A L+ + GD VGY Sbjct: 73 VLVAPPGTGKTTLVPLALAGE--VTGRVVVAQPRRIAVRAAARRMAWLVGGEVGDAVGYT 130 Query: 84 MRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQ 143 +R + VGP TR+EVVT GVL R +QRDP+L G G VILDE HER L ADLALA +LDV+ Sbjct: 131 IRGERRVGPATRVEVVTTGVLVRRLQRDPDLPGTGAVILDECHERHLDADLALAFMLDVR 190 Query: 144 QGLRDDLKLLIMSATLDNDRLQQML----PEAPVVISEGRSFPVERRYLP-----LPAHQ 194 LR DL LL SAT D RL +L P APVV + F VE + P PAH Sbjct: 191 ATLRPDLLLLATSATADTPRLAGVLGAPGPPAPVVGAATARFDVEVVWSPPPGPLTPAHG 250 Query: 195 -----RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS-RIGSDVLLCPLYGA 248 R D VA LR+ SG +L+FLPG GEI V +LA R DVL L+G Sbjct: 251 LRVDPRLLDHVAATVGRALRETSGDVLVFLPGAGEIAAVAGRLAGHRDSVDVLA--LHGR 308 Query: 249 LSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLI 308 S Q A+ P P+ R+VVLAT +AE+SLT+ G+R+VVD R R D GL L+ Sbjct: 309 QSGGTQDAALRPGPR--RRVVLATAVAESSLTVPGVRVVVDAGLARSPRMDHARGLGSLV 366 Query: 309 TQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWG 368 T RVS++S QRAGRAGR PG + + +R AQ+EPE+ +DL+G ++L WG Sbjct: 367 TVRVSRSSAGQRAGRAGREAPGRVYRCWSAAEHDRLPAQAEPEVAVADLTGFALDLALWG 426 Query: 369 CSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLAAMLVSA 427 + L PP + AA+ L+ LGAL+ R++ +G+ +AA+G PRLA L++ Sbjct: 427 HPGGDGLGLLSDPPAGAMDAARASLRALGALDDAGRVTPRGRSIAAVGVHPRLAGALLAG 486 Query: 428 KNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ-----------RSQQLLKRL 476 A AA I A+L G S G AW++ R ++ +RL Sbjct: 487 AGVVGAGRAADIVAVLSGDGPAGGSGPGSGSDDLLAAWRRLRANADRAASARWREESRRL 546 Query: 477 NVR----------------------GGEADSSLIAPLLAG-AFADRIARRRGQDGR-YQL 512 G L A L+ G AF +R+AR R G Y + Sbjct: 547 RSAVAAATAAAAAAAVPADAPAARPGDGVTDDLAAGLVVGLAFPERLARARVPGGTTYLM 606 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 A G A L A AL+ +WL + +G AR+ LA+ +D + L + + Sbjct: 607 AGGTAAELAAGSALTGAQWLAVAVADRGVGRASARVRLAVALDEATAREAGAALRRTDEE 666 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 V W + G + A R ++G + + +PLA+P L A+L+G+R +GL+ L WT +A Sbjct: 667 VAW--SGGDVVARRVERLGAIVLTERPLARPDPALLEAAVLDGLRREGLATLRWTRDAAG 724 Query: 633 LRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 LR RL ++L WP V D +LLAA WL P + GV L+ +D QALR LL Sbjct: 725 LRQRLAFCHRFL-GAPWPDVADTALLAAAPDWLGPDLAGVRRRADLERIDAGQALRRLLP 783 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 W RLD+ P VP+GSR+ + Y + + P LAV++ E+FG P +A GRVP+VL Sbjct: 784 WPQAARLDALAPERLVVPSGSRVRLDYSDPDGPVLAVKVAEVFGWERVPPVADGRVPVVL 843 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRT 805 LLSPA RP+ +T DL+ FW+ Y V+ E++GRYP+H WPDDP PTRR Sbjct: 844 HLLSPAGRPVAVTSDLASFWRTGYPRVRAELRGRYPRHPWPDDPTTAPPTRRV 896 >UniRef50_A4S6B1 Predicted protein n=2 Tax=Mamiellales RepID=A4S6B1_OSTLU Length = 936 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 331/863 (38%), Positives = 477/863 (55%), Gaps = 86/863 (9%) Query: 20 APQVLLSAPTGAGKSTWLPLQLLAHPGING------KIILLEPRRLAARNVAQRLAELLN 73 A + ++ AP GAGK+T +PL G K+I+LEPRRLAA+ A R+AE+L Sbjct: 85 ATRAVMQAPPGAGKTTVMPLAAALAAASAGGDGRAGKVIVLEPRRLAAKAAAMRMAEMLG 144 Query: 74 EKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQAD 133 E+ G+TVGY++R + TR+EVVTEGVLTR ++ DPEL VGLV+ DEFHER+L AD Sbjct: 145 ERAGETVGYQVRFERRASAATRVEVVTEGVLTRRLRNDPELRDVGLVVFDEFHERNLDAD 204 Query: 134 LALALLLDVQQGLRDDLKLLIMSATLD--NDRLQQML-----PEAPVVISEGRSFPVERR 186 +ALAL +VQQ +R DL+LL+MSATL R+ +L PE PV++SEGRS+PVE Sbjct: 205 VALALCREVQQTIRPDLRLLVMSATLGEMGARVAALLRDENGPEVPVIVSEGRSYPVETI 264 Query: 187 YLPLPAHQ--RFDDAVAVATAEMLRQ-ESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 YL P + A A + +R G +L FLPG EI RV L + + V+ Sbjct: 265 YLGAPGAGWGELERATTNAVKDAVRACPDGDVLCFLPGAAEINRVVRDLQRELPNGVVAL 324 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 PLYGALS +Q A+ P+ G R+VV++T IAE+SLTI G+++VVD + +FD R G Sbjct: 325 PLYGALSQEEQAAALAPSKPGTRRVVVSTPIAESSLTINGVKVVVDSGLCKTPKFDARKG 384 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 +TRL T RVS+AS QR GRAGR+ PG L ++ + + PEILQ+DL+ + ++ Sbjct: 385 MTRLETTRVSRASADQRRGRAGRIAPGTCYRLWSEASNAKLQPDTTPEILQADLTPVALD 444 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERL--SAQGQKMAALGNDPRLA 421 L WG D A M+WLD PP L+AA+RLL+ LGALE +L S G M+ L PRLA Sbjct: 445 LAAWGVGDGADMAWLDPPPEGPLIAARRLLRELGALEEGKLVPSDVGSIMSELPVHPRLA 504 Query: 422 AMLV--SAKNDDEAATAAKIAAILEEPPRMGNSDLGVAF-SRNQPAW------------- 465 ML+ +++ + A A ++AA++ + + D + R + W Sbjct: 505 RMLLFGASRGAESARLACQLAAVIGDRDLISGRDAPLDVRCRLRALWGQDPLASAGDLDE 564 Query: 466 ----------QQRSQQLLKRLNVRGGEADSSLIAP---LLAGAFADRIARRRGQDGRYQL 512 +Q ++QLL L R + AP LLA A+ DR+A R+ + G +QL Sbjct: 565 EKPERAVREAKQVAEQLLGNLR-RLASSHPDFCAPAGLLLAVAYPDRVAARKNRGGAFQL 623 Query: 513 ANGMGAMLDA---NDALSR-----HEWLIAPLLLQGSASPDA-----RILLALLVD---I 556 + G A + + +DAL R +E L+ + L G + +A R+ LA +D + Sbjct: 624 SGGGAASVGSEHKDDALLRSGDKANETLVV-VELAGDGAGNAGSRNDRVRLAAPIDRACL 682 Query: 557 DELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA-KPSEDELHQAMLNG 615 + L ++SD V W A ++ A RRL +G L ++ P + K + + AML+G Sbjct: 683 ESGGALYEALSKESDDVFWASASKSVFARRRLTVGSLVLREIPFSVKDNPEATVSAMLDG 742 Query: 616 IRDKGLS--------VLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLP 667 IR+ GL+ +W AE + + A +P + +E+LL++ WL P Sbjct: 743 IREMGLASAFGLNKATTSWLKRAEYVHRSGVDAT-------FPNLSEENLLSSAGEWLAP 795 Query: 668 HMTGVHSLRGLKSLDIYQALRG-LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPA 726 + G S L +D+ ++ + + +D P +P+GS + Y D P Sbjct: 796 WIAGAQSKSDLAKVDVASLVKAHFCTYDHLKLVDDACPVAVRLPSGSNAKVDYDGDVP-V 854 Query: 727 LAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYR-EVQKEMKG 785 +A R+QE FG P + G V L LLSPA R +TRDL+ FW+ AYR +V+KE+ G Sbjct: 855 VAARIQEFFGTTETPRV--GGVNCELHLLSPAGRTQAVTRDLASFWRNAYRTDVRKELAG 912 Query: 786 RYPKHVWPDDPANTAPTRRTKKY 808 RYPKH WPDDP + A T +TKKY Sbjct: 913 RYPKHFWPDDPESAAATSKTKKY 935 >UniRef50_B4S0B6 ATP-dependent helicase HrpB n=2 Tax=Alteromonas macleodii RepID=B4S0B6_ALTMD Length = 894 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 325/898 (36%), Positives = 451/898 (50%), Gaps = 119/898 (13%) Query: 12 ELLTALD---CAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRL 68 EL+T L A +++ AP GAGKST + L + GKI+L++PRR+ RN+A L Sbjct: 12 ELVTPLKESVAANNIIIGAPPGAGKST-VLPLSLLQSSLKGKILLMQPRRVVVRNLADYL 70 Query: 69 AELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHER 128 A+ LNE G+TVGYR++ ++ P TRLE++TEGVLTRMIQ+DPEL+ V ++ DEFHER Sbjct: 71 AKQLNESVGETVGYRIKGESKTSPATRLEIITEGVLTRMIQQDPELADVTAIVFDEFHER 130 Query: 129 SLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA---PVVI--SEGRSFPV 183 S+ +D LAL L+VQ GLRDDL+L++MSATLD LQ +L E PVV ++GR FPV Sbjct: 131 SIHSDFGLALALEVQTGLRDDLRLIVMSATLDIAPLQALLNEFSALPVVNLNTQGRVFPV 190 Query: 184 ERRYL-PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-DVL 241 + RY + A++ + + + + G +L+FLPG G I V ++ S D+ Sbjct: 191 DIRYTRDVQAYELVPKTCNI-IKQAVSEHDGDILVFLPGRGSINAVAREIKGLAESADIA 249 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 + LYGALS + Q+ AI P P G RKV+L+TNIAETSLTIEG+ +V+D E A++ P Sbjct: 250 IHMLYGALSKSAQQDAIAPDPHGRRKVILSTNIAETSLTIEGVTVVIDSLWENSAQYHPS 309 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 + +T L QR+SQAS TQRAGRAGR+ GI L +K ER A + +I + DLS L Sbjct: 310 SDITALTQQRISQASATQRAGRAGRVMAGICYRLCSKSSFERLAKHNAAQIEKEDLSSFL 369 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQG------QKMAALG 415 ++ WG S P ++ L +P L +A++ L L A+ + + QG +++A L Sbjct: 370 LDTYAWG-STPDTLALLTKPTPAQLNSAQQKLHRLHAVGFDDATGQGSITPYGRQVAQLP 428 Query: 416 NDPRLAAMLV---------SAKNDDEAATAAKIAAILEEPPRMGNSDLGV--------AF 458 P LA +L+ S K ++ AA L E + V Sbjct: 429 CQPHLAHLLLTVKSGIEGLSPKENNALKHAAVFVVALSESNMSASGATSVVDALLQVSGN 488 Query: 459 SRNQPAWQ------------QRSQQLLKRLNVRGGEADSSLIA---PLLAGAFADRIARR 503 +RNQ Q +R Q +N A IA PL G R Sbjct: 489 ARNQLIQQASRYVRYVTSSTEREQSFKADINALEEWALGLCIAIAFPLQVGYLRVRATSG 548 Query: 504 RGQDG-------------------RYQLANGMGAML--------DANDALSRHEWLIAPL 536 G Y+LA+G GA L + DA WL Sbjct: 549 NNASGSGACSKNATAGVKQSSQLLEYKLASGKGAELATSNSSAFNHGDADDSSPWLA--- 605 Query: 537 LLQGSASPDARIL-LALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTV 595 +L+G + ++ LA V L P+ + + + G ++A R +T+ Sbjct: 606 VLEGQLIKNTVVIRLAQAVPESYLRLAFPKAFSEKRSAVLNRDTGQMEARRSTGFFAITL 665 Query: 596 KVQPLAKPSEDELHQAMLNGIRDK----GLSVLNWTAEAEQLRLRL--LCAAKWL----- 644 P++ + IRD G W A + L L LC A W Sbjct: 666 NSVPVSGQEK----------IRDNEYWDGAVTEGWFAYLDALPLSQWPLCDADWQWWRRV 715 Query: 645 -----------PEYD----WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 +D WPA E + A E+ L + +++ L+ L AL Sbjct: 716 ALAGKLNLQQDKAFDKPDAWPASLSELVHKAKES-LSAALKSCKNIKSLQQLPWKTALNN 774 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 L W Q L + LP H ++PTG A+ Y E LAV+M EM+ + TIA GRV Sbjct: 775 GLSWPQQDALATHLPTHVSIPTGREAALDYRESGDVVLAVKMPEMYSQNGPLTIAGGRVT 834 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 +V ELLSPA RPLQ T DL FW+G+Y+E+QKEMKGRYPKH WPDDPAN PT +TKK Sbjct: 835 VVCELLSPAGRPLQTTSDLGAFWQGSYKEIQKEMKGRYPKHYWPDDPANAVPTSKTKK 892 >UniRef50_A6W7E3 ATP-dependent helicase HrpB n=4 Tax=Actinomycetales RepID=A6W7E3_KINRD Length = 836 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 332/836 (39%), Positives = 440/836 (52%), Gaps = 40/836 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRL 59 + LPV +LPELL AL +L AP G GK+T +PL L A PG ++++ EPRR+ Sbjct: 13 LEGLPVVEILPELLAALRPHGTAVLQAPPGTGKTTLVPLALADARPG---RVVVAEPRRV 69 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A R A R+A LL E G +VGY +R + V TR+EVVT G+L R + RDPEL GV Sbjct: 70 ATRAAAARMAALLGEPVGASVGYAVRGERRVSAGTRVEVVTTGLLLRRMLRDPELPGVAT 129 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 V+LDE HER L ADLALA L ++ LR+DL L+ SATLD RL +L PVV + Sbjct: 130 VLLDEVHERQLDADLALAFALQSRELLREDLWLVAASATLDVPRLAGLL-GGPVVTATAP 188 Query: 180 SFPVERRYLPLPAHQ------RFD----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 P+E + P P R D D V L + G +L FLPG GEI+ V Sbjct: 189 VHPLEVLWCPPPRPVRPPEGLRVDPALLDHVGALVGRALAERPGDVLTFLPGAGEIRSVG 248 Query: 230 EQLA-SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 ++L S +DV L L+G S +Q A+ P + R+VVLA+ +AE+SLT+ G+R VV Sbjct: 249 DRLRRSASAADVDLVELHGRRSGAEQDAALRPGAR--RRVVLASAVAESSLTVPGVRTVV 306 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D RV R D G L T RVS+AS QRAGRA R PG L + + + Sbjct: 307 DAGLSRVPRLDHARGFGGLDTVRVSRASADQRAGRAAREAPGTVLRAWSAAEHGLLLPHT 366 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQG 408 PEI +DL+G + WG +D + LD PP L AA+ L LGAL G ++ G Sbjct: 367 PPEIATADLTGFALLSAGWGEAD--SLPLLDAPPPGPLAAAREALHRLGALAGGAVTPLG 424 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAF----SRNQP 463 ++MA +G PRLA L+ TAA++ A+L E + G DL A+ + P Sbjct: 425 RRMAEVGLHPRLARALLEGAERVGPRTAAEVVALLSEDGLLRGGDDLVAAWRSAAATGDP 484 Query: 464 AWQQRSQQLLKRLNVRGGEA----DSSLIAPLLAG-----AFADRIARRRGQDGR-YQLA 513 W++ +L L G D+ L L AG A +R+ARRRG +G Y Sbjct: 485 TWRREVARLRSSLGGGTGAGGGGGDAQLPRDLAAGTVVALAHPERVARRRGGEGSAYATT 544 Query: 514 NGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTV 573 G G L L WL + + R+ A + E + R V+ D V Sbjct: 545 GGAGVELAPASGLRGATWLAVAVADRAPGRAAGRVRSA--APLTEDLARSLVGVEVRDEV 602 Query: 574 EWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQL 633 W D G + A R +G + + V+PL P D + A+ GIR +GL VL+ A A L Sbjct: 603 RWRD--GDVAARRVEAVGAVELSVRPLPHPPADLVAAAVAEGIRREGLGVLSLGAAAASL 660 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW 693 R R+ C L + WP + DE LLA L WL + GV S R L +D+ ALR LL W Sbjct: 661 RARVACCRAALGD-PWPDLGDEQLLATLPRWLGAQLAGVRSRRDLSRIDVLAALRALLPW 719 Query: 694 GMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLE 753 RLD P VPTG + + Y + P LA+++QE FG P + +GRVP+VL Sbjct: 720 PQAGRLDELAPVDLPVPTGRSVRVDYADPAAPVLALKLQEAFGWRATPRLVEGRVPVVLH 779 Query: 754 LLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 LLSPA RPL +T DL FW+GAY V+ EM+GRYP+H WP+DP PT RT + S Sbjct: 780 LLSPAGRPLAVTADLESFWRGAYPAVRGEMRGRYPRHPWPEDPLTAVPTARTARRS 835 >UniRef50_C4DH66 ATP-dependent helicase HrpB n=5 Tax=Actinomycetales RepID=C4DH66_9ACTO Length = 841 Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust. Identities = 310/830 (37%), Positives = 445/830 (53%), Gaps = 41/830 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LPV VLPEL ALD + +L AP G+GK+T +PL L H ++G++I+ EPRR+A R Sbjct: 26 LPVRHVLPELREALDGNGRAVLVAPPGSGKTTLVPLALADH--LDGRVIVAEPRRVAVRA 83 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+R+A L + G+ +GY +R TR+EVVT GVL + + RDPEL GV +++D Sbjct: 84 AARRMAALSGTRLGEEIGYTVRGDRKTSARTRVEVVTTGVLVQRLHRDPELPGVAAIVVD 143 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA-PVVISEGRSFP 182 E HER L DLAL +DV+ LRDDL+LL SAT ++L + A P+V + P Sbjct: 144 ECHERHLDTDLALGFAVDVRANLRDDLRLLATSATARAEKLASFMGTATPIVTATASPHP 203 Query: 183 VERRYLP-----LPAH-----QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 + + P P H + D VA + L + G +L+FLPG GEI +V +L Sbjct: 204 ITTVWAPPARPVSPPHGLWVDPKLLDHVAATVHKALAEREGDVLVFLPGAGEIDKVAARL 263 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 ++ DVL L+G Q A+ P + R+VVLA+ +AE+SLT+ G+R+VVD Sbjct: 264 STVPDVDVLT--LHGRQDSRQQDAALQPGAR--RRVVLASAVAESSLTVPGVRVVVDAGL 319 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R R D GL L+T RVS+ S TQRAGRA R PG + + +R A PEI Sbjct: 320 SREPRVDHARGLPSLVTVRVSRDSATQRAGRAAREAPGTVYRCWPEFEHDRLPAYPRPEI 379 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 +DL+ ++ L +WG ++ LD+P A L+ LGA++G ++ +G+ + Sbjct: 380 ATADLTAFILHLARWG----GEVPLLDRPADSATETAMSTLRTLGAVDGTGTITQRGEAL 435 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAF----SRNQPAWQQ 467 AA+G PRLA L+ + A + ++ A+L DL R AWQ Sbjct: 436 AAIGTHPRLARALLDGADSIGARQSCEVVALLSADTSPSTDDLAAELRALRQRRDRAWQT 495 Query: 468 RSQQLLKRLNVRGGEA-------DSSLIAPLLAG-AFADRIARRRGQDGR-YQLANGMGA 518 +++L L R +A + A L+ G AF +R+ARR DGR Y + G A Sbjct: 496 ETRRLESSLPKRLADATRPAAPRSADQAAALIVGLAFPERLARRTTPDGRVYLMTGGTQA 555 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 L +S EWL + AR+ LA D + + L+ ++ + W D Sbjct: 556 ELAPGSRVSGVEWLAIASADRQPGRAAARVRLAAPCDPETALAAAAPLLTETRDIAWRD- 614 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL- 637 G ++A RR +G +T+ +PL P DE A+ +G+R +GL++L + EAE LR RL Sbjct: 615 -GDVRAHRRESLGAITLVERPL-TPKPDEASAALRDGLRAEGLNLLRPSREAETLRSRLA 672 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 C + + WP VDD +LL L+ WL P + L+ D+ ALR LL W Sbjct: 673 FC--RHVFGDPWPDVDDAALLLRLDDWLGPELAKARRRADLERADVASALRRLLPWEQAA 730 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 LD P+ TVP+GS++A+ Y + P LA ++QE FG T PTIA GR LV+ LLSP Sbjct: 731 ALDRVAPSRVTVPSGSKLAVDYTDPTAPKLAGKLQEFFGWTTTPTIADGRAKLVVHLLSP 790 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 A RP +T DL FW+ Y +V+ E++GRYPKH WP+DP T R K+ Sbjct: 791 AGRPAAVTGDLESFWRTGYPQVRAELRGRYPKHPWPEDPTTAEATSRVKR 840 >UniRef50_Q3AZY8 ATP-dependent helicase HrpB n=7 Tax=Chroococcales RepID=Q3AZY8_SYNS9 Length = 834 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 328/838 (39%), Positives = 460/838 (54%), Gaps = 43/838 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-------AHPGINGKIIL 53 M P+ +LP + + +LL AP GAGK+T +PL L+ A G++++ Sbjct: 1 MKDFPIDPLLPTICQQIKPGSTLLLQAPPGAGKTTRVPLALIGALTPIAAEITRAGRVLM 60 Query: 54 LEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPE 113 +EPRRLA R A RLA+ L+E G +GY MR + T++EVVT+G+ R +Q DP Sbjct: 61 VEPRRLATRAAATRLAQSLDEPLGQRIGYAMRGEQKRSTKTQVEVVTDGLFLRRLQADPS 120 Query: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPV 173 L GV V+ DEFHER ADLALALL + LR DL L++MSATLD L+ LP+A V Sbjct: 121 LEGVSCVLFDEFHERRKDADLALALLREAAPVLRPDLALVLMSATLDLSDLRDRLPQADV 180 Query: 174 VISEGRSFPVERRYLPLPAHQRFDDAVAVA---TAEMLRQESGSLLLFLPGVGEIQRVQE 230 + S GR +PVE + ++ V A A L + SG+ L+FLPG+ EI+R + Sbjct: 181 LESAGRCYPVETHHQRARENESLPRQVLRALENHALTLSKGSGA-LVFLPGLREIERCRT 239 Query: 231 QLA-SRIGSDVLLCPLYGALSLNDQRKAIL-PAPQGMRKVVLATNIAETSLTIEGIRLVV 288 L+ ++ + L+G L L+ Q A+ P+ V+LA+ IAE+S+TI+ +RLV+ Sbjct: 240 LLSDAKALQRWRIAILHGQLPLDSQSAALHRCGPEHDGTVILASGIAESSITIDAVRLVI 299 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D R R+DP TG+ L T S AS QR GRAGR G + L + + +R S Sbjct: 300 DSGLSRQLRYDPNTGMEGLETVPSSLASAEQRRGRAGRQSAGQCVRLWSPAEQQRRPNFS 359 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQ 407 PE+L +D +LMEL QWG + WLD PP + LQ LG L+ +LS+ Sbjct: 360 PPELLLADPQPILMELAQWGAGLGKDLPWLDAPPQAAMQEGLSDLQALGLLQPNGQLSSM 419 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ 467 G++++ LG PRL +++ A+ + +A +L E + D G Q Sbjct: 420 GRQLSTLGVHPRLGLLMLEAREHGCSQLGCDLAVLLSERDPLAGRDAGCDLEARLSVIGQ 479 Query: 468 ------RSQQL---LKRLNVRGGE-ADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGM 516 RS+QL L RL V E DS+ A L+ AF +A+ R GQ GRY L G Sbjct: 480 HRTLRVRSRQLRRQLDRLGVTAPEKTDSANAAALVLRAFPQWLAQERPGQPGRYLLRQGR 539 Query: 517 GAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVD---IDELVQRCPQLVQQSDTV 573 GA+L D L L + G D I LAL +D ++EL +R V ++V Sbjct: 540 GAILPPLDQLRGSPALAVARVDTGGR--DTLIQLALPLDSSTLEELGEREGTWV---ESV 594 Query: 574 EWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKG-LSVLNWTAEAEQ 632 WD ++ +KA RRLQ+G+L ++ P + PS ++ +LN + + G L L WTA +Q Sbjct: 595 SWDASRQQVKAERRLQLGELVLRRTPQSAPSPEQCQALLLNALHEAGTLEALPWTAFNQQ 654 Query: 633 LRLRLLCAAKWLPEYD---WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 LR RL W+ +D WP D E+LL TWL P + S R L + +AL G Sbjct: 655 LRQRL----SWMHRHDGPPWPPRDKETLLQD-TTWLAPTLLSCQSWRDLSPAMLDEALWG 709 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 L W +QRLD LP +P+G + +RY +D LAV++QEMFGE T P + +G++P Sbjct: 710 ALSWTERQRLDQVLPERIAIPSGRQAKLRY-DDEEVVLAVKLQEMFGETTGPHVLRGQIP 768 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 + LELLSPA RPLQ TRDL FW G+Y +V++EM+GRYPKH WPDDP PT TK+ Sbjct: 769 VTLELLSPAGRPLQRTRDLEGFWTGSYADVRREMRGRYPKHPWPDDPTRATPTAFTKR 826 >UniRef50_Q2G8M4 ATP-dependent helicase HrpB n=5 Tax=Sphingomonadales RepID=Q2G8M4_NOVAD Length = 817 Score = 434 bits (1116), Expect = e-120, Method: Compositional matrix adjust. Identities = 323/825 (39%), Positives = 464/825 (56%), Gaps = 35/825 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MS LP+ +VLP+LL AL +L AP GAGK+T + LLA P G++I+L PRR+A Sbjct: 1 MSDLPIHSVLPDLLAALRQRESAVLIAPPGAGKTTAVAPALLAEPWCTGQVIVLSPRRVA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+AE+L E+ G T+GY R + TR+ VVTE + I DPELSGV V Sbjct: 61 ARAAAERMAEMLGEEAGGTIGYVTRLDSRRSARTRVLVVTEAIFVATILDDPELSGVSAV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DE HER L +DL LAL ++ Q LR+DL++++MSAT+D R +L +APV+ SEG++ Sbjct: 121 LFDEAHERHLDSDLGLALAVEAQGVLREDLRIVVMSATIDGSRFAALLGDAPVIESEGKA 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 P+ R+L + + A+A A R+E G +L FLPGV +I+R E LA R+ Sbjct: 181 HPLAIRWLGARPDAKVEVAMASAIQTAWREEEGDILAFLPGVAQIERTAETLAERL-PQA 239 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L+ PL+G + QR AI P G R++VLAT IAETSLT++G+ +VVD R A FD Sbjct: 240 LILPLHGQVEPGGQRAAIRRDPSGRRRIVLATAIAETSLTLDGVSVVVDAGLSRRAEFDK 299 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 G+TRL+T R SQAS QRAGRA R PG++ L + A PE++ SDL+ L Sbjct: 300 AAGVTRLVTTRASQASAAQRAGRAARQGPGVAYRLWEEASHAGRPAFDPPEMVTSDLAPL 359 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 + L QWG DPA M+WLD PP + AA+ L LGAL+ + R++ G+ MA L +P Sbjct: 360 ALTLAQWGAGDPATMAWLDPPPAAAMAAAQGALAALGALDKDRRITTHGRAMAKLPMEPA 419 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ------------ 467 LA ML+ A +A AA++A +L+E G G +R W Sbjct: 420 LAHMLLFAAERGQAEEAARLALLLQE---RGLGGRGEDLARRLDRWASERGSRAEASRKL 476 Query: 468 --RSQQLLKRLNVRG--GEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN-GMGAMLDA 522 R ++ +RL RG GE + + LLA AF DRIAR R G L++ G G LD Sbjct: 477 AGRWARMAERLAPRGRAGEVPTGV---LLAEAFPDRIARARSVSGEEWLSSGGRGYRLDP 533 Query: 523 NDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTL 582 L+ WL+ QG A ARI A ++ ++ + V++ T+ W+ A G + Sbjct: 534 ASPLATARWLVIG-DAQGEAK-GARITAAAALEESDVTRHLAHRVEERHTLSWNAADGRV 591 Query: 583 KAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAK 642 +A ++G + + P P + + +++ +R +GL +L A+ L +R A Sbjct: 592 EARLERRLGAIVLARVPDPAPDAEAAARLLIDEVRSRGLDLLPLGEGAKALLVRAGHAGL 651 Query: 643 WLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSE 702 A+ D +LL LE WLLP + G L + + ++ AL G LDW +Q LD Sbjct: 652 -------AALSDAALLDDLEAWLLPLVKGRRDL-AVGAGRLHDALLGRLDWNERQMLDKL 703 Query: 703 LPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPL 762 PA + P G+ AI Y + P + +R+Q +FG +P + Q PL+L L SP +P+ Sbjct: 704 APAEFRSPAGTSHAIDYGHEGGPCVELRVQALFGIDRHPCVGQPPRPLLLSLTSPGGKPI 763 Query: 763 QITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 Q T DL FW+G++++V K+MKGRYPKH WPD+P + P+ +TK Sbjct: 764 QTTADLPGFWRGSWKDVCKDMKGRYPKHRWPDEPWSEDPSLKTKN 808 >UniRef50_A5G2H1 ATP-dependent helicase HrpB n=2 Tax=Alphaproteobacteria RepID=A5G2H1_ACICJ Length = 809 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 330/820 (40%), Positives = 465/820 (56%), Gaps = 46/820 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LPVAA+LP+L +L + +L AP GAGK++ +P LL + G KI++LEPRRL Sbjct: 1 MDELPVAAILPDLRASLARSANAVLVAPPGAGKTSLVPQALLGADWLGGQKIVMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A+L+ E PG TVGYR R ++ +GP TR+EV+TEG+LTR + DP L G+G Sbjct: 61 AARAAAERIAQLIGEAPGGTVGYRTRLESVIGPATRIEVITEGLLTRRLLADPGLDGIGC 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE HERSL+ADLALAL LD+Q+GLR +L++L MSAT D L +L EAPV+ S GR Sbjct: 121 VIFDEIHERSLEADLALALTLDLQRGLRPELRILAMSATADIATLTTLL-EAPVIESAGR 179 Query: 180 SFPVERRYLP--LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 PV + L + A+A A L G +L FLPGVGEI+R E L G Sbjct: 180 VHPVTIEFAARDLADARDLPAALARAVRGALAAHRGDVLAFLPGVGEIRRAAEALE---G 236 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + PLYG L +Q + + P+ Q R+V+LAT+IAETSLT+ G+R+VVD R Sbjct: 237 APATIMPLYGDLPPAEQARVLAPSSQ--RRVILATSIAETSLTVPGVRVVVDGGFRRAPE 294 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FD LTRL+T+R+S+A+ TQRAGRAGR PG+++ L + PEI ++L Sbjct: 295 FDTGRALTRLVTRRISRAASTQRAGRAGREAPGVAIRLWTEALHRGLPEFDAPEIAAAEL 354 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGN 416 SGL++ W +D A + + + PP L A+ LL LGA++ R+S G++MA LG Sbjct: 355 SGLVLTCAAW-GADAAALPFPEPPPPGALAQARALLTDLGAIDATGRISQAGRRMAELGA 413 Query: 417 DPRLAAML------------------VSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAF 458 PRLAAM+ + ++ A +A IA L+ G D GV Sbjct: 414 APRLAAMMLAADSAAEAALAADLAALLEERDPLREAGSADIALRLDAIAGRGGGDRGVIA 473 Query: 459 SRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGA 518 Q A R + L+R GG+ A L+A F DRI RRG+ G ++L+ G GA Sbjct: 474 RIRQAAGTYRGRLGLRRDTQAGGDP-----AVLIAAGFPDRIGVRRGEPGSFRLSEGGGA 528 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 LD D L+R ++A L G +P +I LA + + +R + + + D Sbjct: 529 KLDPADPLARAP-MLAVAALGGRGAP--KIGLAAPISAATIEERLAARIVTTREIGLDGT 585 Query: 579 QGTLKAWRRLQIGQLTV--KVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLR 636 GT+ A R + G L + + P + P E+ A+ IR+K +L W+ EA QL+ R Sbjct: 586 GGTVMARERRRFGALVLAERSTPASPP---EIEAALREAIREK-PGLLGWSDEARQLQAR 641 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 + + PE WP + DE+L A ETWL P++ G+ L+ +LD+ LR L Sbjct: 642 VALMREIEPE-GWPDLSDEALRADFETWLFPYLAGMSRLKEAAALDLLAILRDHLGHERV 700 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 + LD+ LPA P G+ + I Y P A A R Q +G P +A G V L + LLS Sbjct: 701 RALDAALPARIEAPGGA-VPIDYTGPVPVA-AARAQAFYGSDATPRLAGGAVRLQIALLS 758 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 PA RP+ +T DL+DFW+ + + +K+M+GRYPKH WP++P Sbjct: 759 PAGRPIAVTGDLADFWRRGWADARKDMRGRYPKHEWPEEP 798 >UniRef50_C6WNJ1 ATP-dependent helicase HrpB n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WNJ1_ACTMD Length = 772 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 317/805 (39%), Positives = 437/805 (54%), Gaps = 36/805 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV AVLPEL+ L +L AP G GK+T +PL L G++++ EPRR+A Sbjct: 3 LPDLPVRAVLPELIETLSGWGAAVLVAPPGTGKTTLVPLAL------EGRVVIAEPRRIA 56 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A LL E G TVGY +R V +TR+EVVT G+L R +Q DPELSGVG V Sbjct: 57 ARAAASRMAALLGEPVGATVGYSVRGDRKVSRSTRIEVVTSGLLVRRLQHDPELSGVGTV 116 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER L ADL LALLLD + GLR DL+LL SAT+ DRL +++ PV+ + R+ Sbjct: 117 VLDECHERHLDADLLLALLLDARAGLRPDLRLLATSATVAADRLAELMGGVPVLTAHART 176 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE ++P ++R + VA A + + G +L+FLPGV EI+RV G D+ Sbjct: 177 YPVELFHVPPQKNERSEAVVARAIRRAVAETPGDVLVFLPGVPEIRRVAALFQ---GGDL 233 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+G L+ +Q A+L + R V+L+T+IAE+SLT+ G+R VVD RV R D Sbjct: 234 RVDVLHGRLTAAEQ-DAVLRVGREQR-VLLSTSIAESSLTVPGVRAVVDAGLSRVPRVDH 291 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 R GL L T RVS A QRAGRAGR PG + + + EPEI +DL+ L Sbjct: 292 RRGLAGLATVRVSAAVADQRAGRAGREAPGRAYRCWPEHEQSTLPRYPEPEIRSADLTSL 351 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 +EL WG D +SW D PP L AAK +L LGAL R++ +G++M+ALG PRL Sbjct: 352 ALELACWGTPDGEGLSWWDAPPRGALEAAKAVLGNLGALRDGRVTERGERMSALGLHPRL 411 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 A L+ + TA ++ AIL+E G G + R + +L K + Sbjct: 412 ARALLDGGELAGSRTATEVVAILDEDRGSGEDITGRSADRRE------VGRLSKLIPAAS 465 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSRHEWLIAPLLLQ 539 G D +L+ L A +R+ARRR Y +A G A L L+ EWL + + Sbjct: 466 GSGDQALVVAL---AHPERLARRRAPGSPVYLMAGGTAAELPQGSRLADAEWLAIAVADR 522 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQP 599 ARI LA D VQ P L+ + + + WD G + A R +G + + Sbjct: 523 EPGRIHARIRLAARADEQLAVQAAPALLGEREEIAWD---GDVVARRVRHLGAIPLSTTQ 579 Query: 600 LAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLA 659 L + L QA+ G+ +GL +L+W A + R RL + L + WP V D +LL Sbjct: 580 LTGTA--HLQQALRAGLAAEGLGLLSWGPAAVRTRQRLAFLHEVLGD-PWPEVTDAALLP 636 Query: 660 ALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRY 719 ++ + L L L+ + W + D+ P VP+GSRIAI Y Sbjct: 637 LVD------LGNARRKSDLAKLKADHVLQAAMPWPAAAKFDALAPDRLEVPSGSRIAIDY 690 Query: 720 HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREV 779 PP L V++QE+FG PT+A +PLVL LL+PA RP +T DL FW+ Y +V Sbjct: 691 -STTPPTLPVKVQEVFGWTETPTVAG--IPLVLHLLTPAGRPTAVTGDLKSFWQTGYPQV 747 Query: 780 QKEMKGRYPKHVWPDDPANTAPTRR 804 + E++GRYPKH WP+DP P RR Sbjct: 748 RAELRGRYPKHRWPEDPMTAPPARR 772 >UniRef50_Q11S69 ATP-dependent helicase n=2 Tax=Sphingobacteriales RepID=Q11S69_CYTH3 Length = 718 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 260/686 (37%), Positives = 391/686 (56%), Gaps = 28/686 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLA 60 ++LPV ++P+++ +++ AP GAGKST LPL L + GK II+LEPRRLA Sbjct: 8 TTLPVQEIVPQVINHFQDNTTLIVKAPPGAGKSTLLPLTFLNESWLEGKKIIVLEPRRLA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A+ +A R+++LL E+ G+TVGYR+R + + TR+EVVTEG+LTRM+Q D L V LV Sbjct: 68 AKTIATRMSQLLGEQAGETVGYRIRFETKISDKTRIEVVTEGILTRMLQTDNTLKDVALV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ AD+ALAL + Q R+DL+LLIMSAT+D L L +A ++ SEGR Sbjct: 128 IFDEFHERSIHADVALALCREAQLTKRNDLRLLIMSATMDLPELSAKL-KAKIIESEGRQ 186 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE Y + + A ++ + G +L+FLPG EI ++ L +++ S+ Sbjct: 187 YPVEIHYTGVTDMHLLPELTARVVSKASKDNKGDILVFLPGQAEINACRDLLDNKL-SNT 245 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 ++ LYG L Q+ A+LP G RKVVLAT+IAETSLTIEG+ VVD + ++FDP Sbjct: 246 VVHTLYGQLPFAQQQAALLPDQTGKRKVVLATSIAETSLTIEGVTTVVDSGFGKRSKFDP 305 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 ++GL+RL T +S + QRAGRAGRL G + +K Q E +PEI +DLS L Sbjct: 306 QSGLSRLETVNISVDAADQRAGRAGRLSAGTCYRMWSKAQHETLQKHHQPEIEITDLSSL 365 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 ++E+ WG S+ M WL PP ++ AK L + AL+ +++A G+K+ L +PR+ Sbjct: 366 VLEMAVWGISNIYNMVWLTPPPQSHVKQAKETLHYIDALDRNKVTAHGKKIHQLPCNPRI 425 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVA----------FSRNQPAWQ---- 466 A ML+ A+ ++ A A IAAI+EE + + GV F RN + Sbjct: 426 AHMLLMAEKLEQEALATDIAAIIEEKDPLTIKEAGVDINERIKALRRFRRNDGKGRAFGL 485 Query: 467 ----QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLD 521 RS + L + V DS + LLA A+ +R+A R G ++QLANG A Sbjct: 486 IERVARSYRDLMEIEVENEGFDSFMTGLLLAHAYPERVAFARPGNQSQFQLANGTYAQFS 545 Query: 522 ANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 D+LSR W+ + + +I +A ++ +L +V+ + +V WD Sbjct: 546 HKDSLSRESWVSVSHI--DAREGTGKIFMASPLNPKDL----KGMVKTAVSVHWDLISND 599 Query: 582 LKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAA 641 L L+IG++ +K P+ P+++E +A+ + ++ G +L++T E EQ + + A Sbjct: 600 LIVHTELRIGKIVLKSFPMDDPTDEERSRALCDVVKKDGRELLHFTPEFEQWQAAMFRAQ 659 Query: 642 KWLPEYDWPAVDDESLLAALETWLLP 667 + P +P VD ESLL + WL P Sbjct: 660 QQHPLAQFPDVDTESLLLTCDDWLTP 685 >UniRef50_A6W340 ATP-dependent helicase HrpB n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W340_MARMS Length = 707 Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust. Identities = 277/707 (39%), Positives = 391/707 (55%), Gaps = 38/707 (5%) Query: 134 LALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRY--LP 189 +A AL L ++ RD+ LKLL+MSATLD + L+ L + S+GRSFP+ Y Sbjct: 1 MAFALCLQARELYRDEDPLKLLVMSATLDTETLEARLG-CSTLTSQGRSFPITTHYSNKA 59 Query: 190 LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD--VLLCPLYG 247 L + Q D+ V + T + +ESGSLL+FLPG EI++ QL R+G + + + PLYG Sbjct: 60 LKSFQVTDEVVRI-TCQAFNEESGSLLVFLPGQKEIRQAATQLQQRLGHEEHLSILPLYG 118 Query: 248 ALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRL 307 LSL +Q I P RK+VLAT+IA+TSLTIEGIR+V+D R ARFD T TRL Sbjct: 119 ELSLKEQETVIEPVIAPARKIVLATSIAQTSLTIEGIRVVIDSGLSREARFDASTATTRL 178 Query: 308 ITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQW 367 T+R +QA QR GRAGR E G+ ++EQ + A Q++P+I SDLS L+M+L +W Sbjct: 179 HTRRATQAETIQRMGRAGRTEAGVCYRWWSEEQQHQLAPQAQPQIEISDLSSLVMDLAKW 238 Query: 368 GCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-------LSAQGQKMAALGNDPRL 420 G + ++ W+ PP + A LL L ALE LS G++M+ LG +PRL Sbjct: 239 GVQERLELDWITPPPNSHWQQAIGLLSNLQALEQSSGSSPSLTLSHLGEQMSELGIEPRL 298 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGN--SDLGVAFSRNQPAWQQRS----QQLLK 474 A +L+ K + + ++ I IL E + N SDL + +Q S Q LK Sbjct: 299 ARLLLDGKLINNSDASSAICTILSEGDPLSNHHSDLADRLNWLTGHYQAHSKRPRQNYLK 358 Query: 475 RLNVRGGEA-----------DSSLIAPLLAGAFADRIARRRGQD---GRYQLANGMGAML 520 + D + +A LL AFADRIA+R GQD RY+LANG A L Sbjct: 359 AQQQWQKRSQQISIQEVSIDDKNDLAFLLIRAFADRIAQRVGQDHDKARYKLANGRLASL 418 Query: 521 DANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQG 580 + D ++ EW+IA + + RI LA ++D L+ L+ + W + Sbjct: 419 SSLDPCAQSEWVIALDIGGHHGQDEDRIFLACPFELDLLLANFTDLLIIKLHLAWSKKEA 478 Query: 581 TLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 L + + I +L + Q L PSE+++ QA+ IR +GLSVL W A+QL+ R+ A Sbjct: 479 RLLSESQRWISKLCIDKQKLTTPSEEDISQAVCQYIRQEGLSVLPWNESAKQLKARMQFA 538 Query: 641 AKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLD 700 + WP D LL LETWL P++ V + + + L + L LDW QQ L Sbjct: 539 FLHDQQTPWPDCSDNGLLHDLETWLGPYLGKVTNQQAINKLGLNDILLSRLDWNQQQHLH 598 Query: 701 SELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQR 760 +PA TVP+G+ I Y E P L V++QEMFG +PT+ + +ELLSP QR Sbjct: 599 QNVPARITVPSGASHTIDYCEQQ-PTLRVKLQEMFGYTKSPTVLNQIIR--IELLSPGQR 655 Query: 761 PLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 PL +++DL+ FW+ AY EV+KEM+GRYPKH WP+DP + T +T + Sbjct: 656 PLAVSQDLAFFWREAYPEVRKEMRGRYPKHPWPEDPLSALATSKTNR 702 >UniRef50_D2QWI1 ATP-dependent helicase HrpB n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWI1_9PLAN Length = 863 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 303/871 (34%), Positives = 447/871 (51%), Gaps = 84/871 (9%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRR 58 ++ LP+ A LPELLT L + +V+L AP GAGK+T +P +L GI G +I++L+PRR Sbjct: 11 LAPLPIDAALPELLTHLKASRRVVLVAPPGAGKTTRVPPAIL-DSGICGDKQIVVLQPRR 69 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 LAAR A+R++ + G+ +GY++R ++ V TR+EV+TEG+L R + DP L VG Sbjct: 70 LAARATAERMSSERGSRLGEEIGYQVRFESRVSKQTRIEVLTEGILQRRLASDPFLERVG 129 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 ++ DEFHERSL +DL L ++ V+ +RDDL +++MSATLD + + L +APVV+SEG Sbjct: 130 CIVFDEFHERSLASDLLLGMVEQVRASVRDDLMVVVMSATLDASGVSKYLADAPVVVSEG 189 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS-RIG 237 R FPVE RY Q + V + + Q G LL+FLPGVGEI+ Q L + Sbjct: 190 RKFPVEIRYDSDLNRQPLAEQVLSTVSRAIEQRDGDLLVFLPGVGEIRGAQRLLENASFS 249 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 D + PLYG LSL +Q++A+ Q RK+VLATN+AETS+T++G+ +V+D RV+R Sbjct: 250 RDFAIQPLYGDLSLEEQQQAL--RKQSRRKIVLATNVAETSVTVDGVTIVIDSGLARVSR 307 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + TGL RL + +S+AS QRAGRAGR PGI L + AA + PE+ + DL Sbjct: 308 YHESTGLDRLDLEPISRASADQRAGRAGRTAPGICYRLWPEAMHRARAAFNTPEVQRVDL 367 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGND 417 + ++E+L W D A W + P L A LL+ + A + ++ G++M L Sbjct: 368 APAVLEILAWIEPDLATFPWYEPPASGTLDRAVSLLEQIHAADERSITELGRQMLRLPIH 427 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEE----------------PPRMGNSDLGVAFSRN 461 PRLA M++ A+ + A AA+L E P R R Sbjct: 428 PRLARMMLYAREHGDLLPVATAAALLSERSPWNHAPGGTRGNFAPRRAREHSESDVLDRV 487 Query: 462 Q--PAWQQRSQ---------------------QLLKRL----NVRGGEADSSLIAPLLAG 494 Q A++ R + QLL+ + N D L +LAG Sbjct: 488 QAIAAFEARGETHFPFGELNPRSAKTLLRTRDQLLRLVDAPRNTSSMPEDELLQRAILAG 547 Query: 495 AFADRIARRR--------GQDG--RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASP 544 F DR+A+RR +D R + G G LD + + E + L G Sbjct: 548 -FPDRVAKRRETKLAPEYARDDAVRGLMVGGRGVKLDRSSQVLSEELFVCVELDMGQGE- 605 Query: 545 DARILLALLVDIDELVQRC---PQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA 601 +V V+R PQL++ +DD ++ +R L + A Sbjct: 606 -------AIVRQASGVKRAWLDPQLLETKRVAVFDDELLRVQGRKRTSWNGLLLDESQAA 658 Query: 602 KPSEDELHQAMLNGIRDKGLSVLNWTAEA---EQLRLRLLCAAKWLPEYDWPAVDDESLL 658 P EDE+ + + + V +E LR RLL A+ +P+ + P +D + Sbjct: 659 LPEEDEVAEILAKEAIARWDRVFPPESEGVLDYVLRTRLL--ARLMPKLELPPMD----V 712 Query: 659 AALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIR 718 L++ L G S+ L+ ++ L W QQ ++ E P VP+G+ I + Sbjct: 713 PYLQSILPAVARGCRSIDDLRRAPWLMVIKNGLSWDQQQAIEREAPERIKVPSGNAIRLE 772 Query: 719 YHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYRE 778 Y D PP LAVR+QE+FG P IA GR P++L LL+P R Q+T DL FW +Y Sbjct: 773 YQADGPPILAVRIQEIFGLLETPKIAGGRQPILLHLLAPNMRVAQVTDDLHSFWASSYAL 832 Query: 779 VQKEMKGRYPKHVWPDDP----ANTAPTRRT 805 V+K+++ RYPKH WP+DP A + P R+ Sbjct: 833 VRKDLRARYPKHSWPEDPYTAVAQSRPARKN 863 >UniRef50_D1ADU7 ATP-dependent helicase HrpB n=6 Tax=Actinomycetales RepID=D1ADU7_THECD Length = 843 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 317/847 (37%), Positives = 456/847 (53%), Gaps = 63/847 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI----NGKIILLEPRR 58 +LPV +P L AL +L AP G GK+T +PL L G +++++EPRR Sbjct: 14 ALPVRTAIPALRAALHEHGTAVLVAPPGTGKTTLVPLALAGEAGPASPRRSRVLVVEPRR 73 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 A R A+R+A +L E+ G VG+ +R ++ P + +EVVT GVL R +QRDPEL+GV Sbjct: 74 PAVRAAARRMAWMLGEQVGRRVGFAVRGEHR--PGSSVEVVTTGVLLRRLQRDPELAGVD 131 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V+LDE HER L AD ALA LLDV+ LR DL+L+ SAT + + ++L PVV + Sbjct: 132 AVLLDECHERHLDADTALAFLLDVRAALRPDLRLVAASATAEAEPWARLL-GGPVVTAAA 190 Query: 179 RSFPVERRYLP----------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 PVE + P + + + VA L + G LL FLPGVGEI RV Sbjct: 191 ELHPVEVVWAPPPRPLPPPHGMRVAAQLLEHVAATIRRALAERDGDLLCFLPGVGEIARV 250 Query: 229 QEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 L + L L+G + DQ +A+L A R+VVLAT +AE+SLT+ G+R+VV Sbjct: 251 AALLED-LAPQAELLTLHGRATARDQ-EAVL-AGGTRRRVVLATAVAESSLTVPGVRIVV 307 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D R R D GL L T RVS+A+ QRAGRAGR PG+ + + R + Sbjct: 308 DSGLAREPRTDHARGLGALTTVRVSKAAAEQRAGRAGRQGPGVVYRCWSAAEHRRLPDRP 367 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQ 407 PEI +DL+ +++ WG D ++ D PP L AA+ LQ +GAL+ + R++ + Sbjct: 368 RPEIELADLTAFALQIACWGDPDATGLALPDPPPRAALQAARAALQAIGALDADGRVTDR 427 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP---------------RMGNS 452 G++M G PRLA L+ AA+ A+L EPP R G Sbjct: 428 GRRMVHAGVHPRLARALLDGAPLVGRRGAAEAVALLSEPPPAWAGDDLADLLRAARTGRR 487 Query: 453 DLGVAFSRNQPAWQQRSQQLLKRLNVRG-----------GEA--DSSLIAPLLAGAFADR 499 D A++ W++ +++LL+ L G G+A D + + ++A AF +R Sbjct: 488 D--AAYTDR---WRRETRRLLRVLTGPGEDTGGADGQECGDAGTDETALGTVVALAFPER 542 Query: 500 IARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDEL 559 +A+ RG GRY +A+G GA L A L WL + + A+ ARI LA +D + Sbjct: 543 VAKARGA-GRYVMASGTGAELAAGSHLENARWLAIAVADRPPAAASARIRLAAAIDAEVA 601 Query: 560 VQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDK 619 L+ +++ V W D G ++A R ++G + + PLA P ++ +A+ G+R + Sbjct: 602 AVAAAPLLTETEEVAWRD--GDVRARRIRRLGAIELAAVPLADPDPAQVAEALAEGLRRE 659 Query: 620 GLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLK 679 GLS+LNWT +A LR RL + L + WP V D ++L + + G+ L Sbjct: 660 GLSLLNWTPQAVALRERLAFCRRALGD-PWPDVGDAAVLEEVAK----RLHGLRRRADLA 714 Query: 680 SLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAT 739 +D+ LR +L W RL+ P TVP+GSRI I Y + P LAV++QE+FG Sbjct: 715 GVDLSAVLRDMLPWECAARLEEMAPERITVPSGSRIRIDYRGEQP-VLAVKLQELFGWRQ 773 Query: 740 NPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANT 799 P +A GRVPLV+ LLSPA RP +T DL+ FW+ YR V+ E++GRYP+H WP+DPA Sbjct: 774 APRLAGGRVPLVVHLLSPAGRPAAVTGDLASFWREGYRAVRAELRGRYPRHPWPEDPATA 833 Query: 800 APTRRTK 806 PTR K Sbjct: 834 EPTRHAK 840 >UniRef50_B5ZE33 ATP-dependent helicase HrpB n=4 Tax=Acetobacteraceae RepID=B5ZE33_GLUDA Length = 853 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 339/846 (40%), Positives = 472/846 (55%), Gaps = 59/846 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LPVAA+LP L +L P +L AP GAGK+T +PL LL P +G+I++LEPRRLA Sbjct: 18 ADLPVAAILPALRASLAEHPSAVLVAPPGAGKTTTVPLALLDAPWRGDGRIVMLEPRRLA 77 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+A LL E G VGYR R + + TR+EVVTEG++ R + DP L GV V Sbjct: 78 ARAAAQRMAALLGEDAGGLVGYRTRLDSAISERTRIEVVTEGLMVRRLLADPTLEGVACV 137 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HERSL AD ALA LDVQ+ LR DL+L+ MSAT+D L ++ EA ++ S GR Sbjct: 138 ILDEIHERSLDADAALAFCLDVQRSLRPDLRLVAMSATMDGAALSALM-EARLIESAGRM 196 Query: 181 FPVERRYLP--LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPV + P +P + +A+A A L + G +L FLPGVGEI+R Q LA + Sbjct: 197 FPVAIHHAPRDIPHVRDLPEAMARAIRAALAEHEGDILAFLPGVGEIRRTQAALAG---A 253 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQ-----GMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + PLYG + +Q + + P P R+V+LAT+IAETSLT+ G+R+VVD Sbjct: 254 PAAILPLYGDMPPAEQDRVLRPGPSDGQKGNGRRVILATSIAETSLTVPGVRVVVDGGYR 313 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R R DP TGL+RL T R+S+A+ QRAGRAGR PG +L L ++ A PEIL Sbjct: 314 RSPRLDPGTGLSRLETVRISRAAAAQRAGRAGREGPGAALRLWSEATQRGMAPHDRPEIL 373 Query: 354 QSDLSGLLMELLQWGC---SDPAQMSWLDQPPVVNL-LAAKRLLQMLGALEGERLSAQGQ 409 ++L+GL ++ W + P ++ D PP A LL + + R++A+G+ Sbjct: 374 DAELTGLRLDTAAWQAAMGTAPDELPLPDAPPNGAFEAARALLLALGALDDDARITAEGE 433 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE-----------------PPR---- 448 +MAALG PRLAAM+++A++ EAA AA IAA+LEE PP Sbjct: 434 RMAALGAHPRLAAMMLAARDAGEAALAADIAALLEERDPLRPRPAGGRGAPAVPPADIAL 493 Query: 449 ---------MGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADR 499 ++D G Q A Q R +RL +R G A A LLA AF DR Sbjct: 494 RLDLIAGGDHADADRGALARIRQAAGQYR-----RRLGLRAGTAGQGHAASLLAAAFPDR 548 Query: 500 IARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDEL 559 IA+RRG+ G ++L+ G GA L D L+ L+A L + D R+ AL D D L Sbjct: 549 IAQRRGEPGSFRLSGGGGARLGKTDRLA-DAGLLAVATLHVRTAADIRMAAAL--DPDSL 605 Query: 560 VQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDK 619 + + + D G++ A RRL++G L ++ + +A D + +L + D+ Sbjct: 606 PETVRRRATEQVETTLDPVTGSVMARRRLRLGALVLRDRTVAAAPGD-VADLLLRQVADR 664 Query: 620 GLSVLNWTAEAEQLRLRLLCAAKWLPEYD-WPAVDDESLLAALETWLLPHMTGVHSLRGL 678 + L WT + Q + R + A+ LP D P + D +L A WL P +TG+ L + Sbjct: 665 LDTTLGWTPASRQFQAR-VALARGLPGRDALPDLSDAALAADAAEWLAPWLTGLSRLSEV 723 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 +LD+ LRG LD LD LP H +P G R+ + Y + P A A R Q +G Sbjct: 724 AALDVLAMLRGRLDHATLAWLDRALPTHLDLP-GGRVPVDYTQPVPTASA-RAQTFYGVR 781 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN 798 P +A G+V L + LLSPA RP IT DL+ FW G++ +++++M+GRYP+H WP++PA Sbjct: 782 ETPRLADGQVGLQVALLSPAGRPQAITADLAGFWAGSWADMRRDMRGRYPRHDWPENPAT 841 Query: 799 TAPTRR 804 AP R Sbjct: 842 AAPPAR 847 >UniRef50_B0SIC0 HrpA-like helicase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIC0_LEPBA Length = 821 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 282/840 (33%), Positives = 448/840 (53%), Gaps = 66/840 (7%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRR 58 + PV + L +++ ++ P +L AP G+GK+T LPL+LL H GI KI +LEPRR Sbjct: 5 FETFPVLSALQKIVDSIQNYPVTILDAPPGSGKTTALPLELL-HSGIAQGKKICILEPRR 63 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +AA+N A+R+++ + E G+T+GYR+R + NT++E +T+G+LTR + DPELS G Sbjct: 64 IAAKNAAKRMSQSIGEPVGNTIGYRVRFDSQTNHNTKIEFLTDGILTRYLLSDPELSEYG 123 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQM-LPEAPVVISE 177 L+I DEFHER L++DL AL Q+ R+DLK+LIMSATL+ ++ +P P+ +S Sbjct: 124 LLIFDEFHERRLESDLCFALARKSQEIFRNDLKILIMSATLEGQNFSKIGIPNPPIQVS- 182 Query: 178 GRSFPVERRYLPLPAHQ---RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 + P+E Y+ R D + AT +M G +L+FL G EI ++ +L S Sbjct: 183 METHPLEIFYMGESKKNNQIRLLDLIPKATKQM----EGDILVFLSGKKEILDLKYRLES 238 Query: 235 --RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + ++ PL+G +SL+DQ K LP +G +K++L+TNIAE+S+TI G+R+V D Sbjct: 239 MPSVHESSVVLPLFGDMSLSDQEKVFLPDTKGKKKIILSTNIAESSVTIPGVRVVFDTGF 298 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 + + FD +G+T L+ R+S +S QRAGRA R G L +KE+ +++PEI Sbjct: 299 FKHSVFDADSGITHLVRDRISLSSAKQRAGRAAREGKGFVYRLWSKEEESSFYDRTKPEI 358 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKM 411 L+ DL L++E+ +G + + +LD P ++L + L+ LG L E ++L++ G+ Sbjct: 359 LEGDLDRLVLEVKSFG-EEIHSLPFLDPPNKGSMLLSIERLKQLGCLDENDQLTSLGKNA 417 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE--------------PPRMGNSDLGVA 457 RL ++L S E + A I +IL + P + +L Sbjct: 418 LQYPVPIRLGSIL-SRLPKHEGTSIADIISILGKESQGTEAKEFFKSASPNQFSLELKNV 476 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGM 516 + + ++ +S+ R + + D + F DRIA+R+ ++G+ Y+L+NG Sbjct: 477 YEQIMNIFKHKSEN---RTHTKQFHRDHYICL-----GFPDRIAKRKEKEGKEYKLSNGK 528 Query: 517 GAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRC----PQLVQQSDT 572 L++N L E+LIA L S I L V +D L++ C ++ Q + Sbjct: 529 IGFLNSN-LLELPEFLIA--LDTFSFGQTLYITQYLPVSLD-LIEDCLENQIKIRQNPEI 584 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE--- 629 + L IG+L + + L KP+ + A+ + D L+W +E Sbjct: 585 RTNQKEESFLIVKEERSIGELVLGSKELHKPNPHSIQTALEGYLLD-----LDWESEWKK 639 Query: 630 AEQL-----RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIY 684 E L R+ L L V E L + + WL P + L L Sbjct: 640 KEDLIHYYNRVLFLVQNGVLD----LNVSFEHLKSNAKDWLFPFLNFETQKFNLSHLPFL 695 Query: 685 QALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA 744 +A + + + Q + E P+ VP+GS+I I+Y +N P L V++QE+FG P +A Sbjct: 696 EAFKAYVGYENQSLIQKEAPSSIQVPSGSQIPIQY-TNNEPELHVKLQELFGLKQLPNLA 754 Query: 745 QGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRR 804 +G+V +++ LLSPA+RP+QIT+DL FW Y EV+KE+KGRYPKH WPD P PT+ Sbjct: 755 KGKVKILIHLLSPARRPVQITKDLESFWNIGYHEVKKELKGRYPKHPWPDKPWEAVPTKH 814 >UniRef50_C7JEP3 DNA helicase HrpB n=8 Tax=Acetobacter pasteurianus RepID=C7JEP3_ACEP3 Length = 855 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 341/858 (39%), Positives = 475/858 (55%), Gaps = 74/858 (8%) Query: 4 LPVAAVLPELLTAL------DCAPQVLLSAPTGAGKSTWLP--LQLLAHPGINGKIILLE 55 LPV VLPEL L D +L AP GAGK+T +P L A + KII+LE Sbjct: 17 LPVQDVLPELCAVLAQNPTTDHPASAILVAPPGAGKTTSVPPVLAAAAWRAPSDKIIMLE 76 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRRLAAR AQR+A L+ E+ G VG+R R ++ V TR+EV+TEG+ R + DP L Sbjct: 77 PRRLAARAAAQRIASLMGEEVGGFVGFRTRLESAVSDRTRIEVLTEGLFLRRLLGDPMLE 136 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVI 175 GV VILDE HERSL ADLALA LD+Q+ LR DL+L+ MSAT + +RL ++ APV+ Sbjct: 137 GVACVILDEIHERSLDADLALAFCLDLQRTLRPDLRLVAMSATAETERLAALM-NAPVLT 195 Query: 176 SEGRSFP--VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 SEGR FP V +P+ + A A + L + G +L FLPG GEI+RV QL Sbjct: 196 SEGRMFPLTVHHAKHDIPSLRDIATATATGVRQALAETEGDILTFLPGTGEIRRVM-QLL 254 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + + VL PL+G L +Q + + P +G R+V+LAT+IAETSLT+ G+R+VVDC Sbjct: 255 DGVPATVL--PLHGELHPAEQARVLRPGNEGERRVILATSIAETSLTVPGVRVVVDCGFR 312 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEI 352 RV RFD GL+RL T R+S+A+ QRAGRAGR PG++ + + ERA Q + PEI Sbjct: 313 RVPRFDAGAGLSRLDTVRISKAAARQRAGRAGREAPGMA-YCLWSAHTERALPQHDRPEI 371 Query: 353 LQSDLSGLLMELLQW----GCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQ 407 L++DLS ++ W G +D + DQPP + AAK LL +LGAL + +++ Sbjct: 372 LEADLSDFVLATALWADTVGSAD-TPLPLPDQPPGSAVAAAKELLILLGALDDAGQITKL 430 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKI-------------AAILEEPPRMGNSDL 454 G+ MA LG PRLAAM+++A+ +EAA AA + AA PP + +D+ Sbjct: 431 GRSMADLGTHPRLAAMMLAARTAEEAALAADLAALLEERDPLRPRAAGRGGPPPIPPADI 490 Query: 455 G-----VAFSRNQPAWQQ----RSQQLLKRLNVRGG-EADSSLIA---PLLAGAFADRIA 501 +A N P + R +Q R R G +A + LLA F DRIA Sbjct: 491 TLRLDLIAGEDNNPQADRGALARIRQAAARFRTRMGLKARHPAVGDAAALLAAGFPDRIA 550 Query: 502 RRRGQDGRYQLANGMGAMLDANDALSRHEWL-IAPLLLQGSASPDARILLALLVDIDELV 560 RG G Y++ANG A L +D L++H+ L +A L L+ +A I +A +D + L Sbjct: 551 LCRGDMGSYRMANGSNARLRRDDGLAKHKLLAVAGLHLRTAAE----IRMAAPLDSNALP 606 Query: 561 QRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQL-----TVKVQPLAKPSEDELHQAMLNG 615 + ++ D G + A RR +IG L T KV+P ++ +L Sbjct: 607 PALLERTREQVETTLDPVSGNIMARRRTRIGCLVLRDRTEKVKP------EDAGPLLLAQ 660 Query: 616 IRDKGLSVLNWTAEAEQLRLRLLCAAKWLP-----EYDWPAVDDESLLAALETWLLPHMT 670 ++ + LNW+ +QL+ R+ A LP E +WP +L ++ WL P++ Sbjct: 661 AKEAPETTLNWSDAVKQLQARVELACT-LPGGTGMEEEWPDFSSTALAGCMDEWLTPYVE 719 Query: 671 GVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVR 730 G S+ L+ LDI LR L + LD ELP P G +A + P + R Sbjct: 720 GCTSITALRELDILNLLRTYLGYARTSWLDKELPTSLPFPGG--VAEVDYTQPVPVASAR 777 Query: 731 MQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKH 790 Q +G A P +A GRVPL L LLSPA RP IT DL+ FW+G + +++++M+GRYPKH Sbjct: 778 AQAFYGTAETPKLAGGRVPLRLALLSPAGRPQAITADLAGFWQGGWADMRRDMRGRYPKH 837 Query: 791 VWPDDPANTAPTR-RTKK 807 WP++PA AP R R K+ Sbjct: 838 EWPENPA-LAPARPRAKR 854 >UniRef50_A7BE71 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE71_9ACTO Length = 866 Score = 411 bits (1056), Expect = e-113, Method: Compositional matrix adjust. Identities = 306/861 (35%), Positives = 442/861 (51%), Gaps = 67/861 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP----LQLLAHPGINGKIILLEPRRL 59 LPV L ++ A +++AP G GK+T LP + L H G++++ +PRR+ Sbjct: 14 LPVTRALSDIAAAARPGGCAVITAPPGTGKTTLLPPAVAVALAQHDAAAGRVLVTQPRRV 73 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A LL E+ G VGY +R + V TR+E+VT GV R +QRDPEL GV Sbjct: 74 AARAAARRIARLLGEEAGGQVGYSVRGDSRVSERTRVEMVTPGVALRRLQRDPELPGVSA 133 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDR----LQQMLPEAPVVI 175 +I+DEFHER L DLALA LD + LRDDL + + SATL+ R L+ E P ++ Sbjct: 134 LIIDEFHERDLDTDLALAFALDARSALRDDLFVALTSATLEASRTVDFLRASTGEEPALV 193 Query: 176 S-EGRSFPVERRYLPLP---------------AHQRFDDAVAVATAEMLRQESGSLLLFL 219 G FP+E RY P P + + VA E + GS+L+FL Sbjct: 194 DIPGDVFPLELRYAPPPRGVEAVGAIGDERVGVRREYLAHVARTVEETVAATEGSVLVFL 253 Query: 220 PGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSL 279 PGVGEI+ V+ L R+G D+ + L+G LS +Q +A+ PA R+V+L+T+IAE+SL Sbjct: 254 PGVGEIETVRGNL--RLG-DIPVLALHGQLSAAEQDRALSPA--SGRRVILSTSIAESSL 308 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 T+ G+ +VVD R RFD L+ L+T + A + QRAGRA R PGI++ ++ Sbjct: 309 TVPGVSVVVDAGLAREPRFDAGRSLSSLVTVPAALARLEQRAGRAARTGPGIAVRVMDAV 368 Query: 340 QAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL 399 R AQS P I DL+ ++++ WG + ++S LD PP AA + L LGA+ Sbjct: 369 DVARRPAQSAPGIATQDLTDARLQVVSWG-TPVEELSLLDAPPAGTWEAAGQRLSSLGAV 427 Query: 400 -EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGV-- 456 E +A G+ +A+L +P L L+++ A+ AA+ A+L E R+ +DLG Sbjct: 428 DEAGAATALGRTLASLPLEPPLGRALLASSALLGASKAARFVALLSEDLRVPGADLGALE 487 Query: 457 -----------AFSRNQPAWQQRSQQLLKRLNVR-------------------GGEADSS 486 A + Q A + ++ L+RL R G Sbjct: 488 RRLGRGGASGAAGTHAQAARVKDTRARLERLAQRLPASAPDDALASVVTERQKGSRTRED 547 Query: 487 LIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDA 546 +A A A+ + IARRR Y LA G+GA L L EWL + + AS A Sbjct: 548 ELALTCALAYPEWIARRRAGSAAYILAGGVGAELPQGSPLEGQEWLAVASIDRAPASRHA 607 Query: 547 RILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSED 606 RIL A+ + ++ + L++ D +G L A R +G + +K P + SED Sbjct: 608 RILAAVPLSEEDALAAGAALLETRTQASID--KGVLTATRTRALGAIPLKSTPASSLSED 665 Query: 607 ELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLL 666 E + + + +GL L W EA LR R+ L WP V DE+L + WLL Sbjct: 666 EAVALVADHLAARGLGDLGWGKEASSLRERMRVLHDVL-GNPWPDVSDEALACSAHEWLL 724 Query: 667 PHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPA 726 P + L ++ + ALR +L W RLD P +P G I + + P Sbjct: 725 PWAKRLAQGGSLSNVSMLDALRSMLPWPDAARLDELAPEKMPIPAGGTRPIDWSGAH-PV 783 Query: 727 LAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGR 786 L +R+Q+ FG P + GRVPLVL L PA RP +T DL+ FW G YR+V+ +++GR Sbjct: 784 LTLRVQQAFGWTDTPRLVDGRVPLVLHLTDPAGRPAAVTSDLTSFWAGPYRDVRAQLRGR 843 Query: 787 YPKHVWPDDPANTAPTRRTKK 807 YPKH WP+DP + PT R K+ Sbjct: 844 YPKHPWPEDPLHAEPTNRAKR 864 >UniRef50_A3WLA9 Helicase, ATP-dependent n=1 Tax=Idiomarina baltica OS145 RepID=A3WLA9_9GAMM Length = 832 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 292/836 (34%), Positives = 458/836 (54%), Gaps = 38/836 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK----IILLEP 56 M +LP+ A+ LL A +V++ AP GAGKST LPL LLA ++G I+LL+P Sbjct: 1 MLNLPIDAIKLSLLERCPGA-RVVIEAPPGAGKSTALPLHLLASSALHGDNEGLIVLLQP 59 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RR+AA ++A LAE LNE G T+GY +R + +TRL V+TEG+ TR +Q+DPEL Sbjct: 60 RRVAALSIANFLAEQLNESVGKTIGYSIRGDSKRSQDTRLMVITEGIFTRWLQQDPELHE 119 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP---- 172 + VI DEFHER++ +DL+L L+LD+ LR +L L+IMSATL + L L A Sbjct: 120 ITTVIFDEFHERNIHSDLSLGLVLDLLP-LRPELNLIIMSATLPGEALTTWLTNATEQRF 178 Query: 173 -VVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 ++ + + F ++ Y P +R+ + E + +L+FLPG+ EI+ V+++ Sbjct: 179 ELLSVDVKRFDLDVHYRPPSRLERWLEESVPVIVEAFQHARKGVLVFLPGMREIKYVEQR 238 Query: 232 L-ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 L + IG DV + L+G+L+ + Q++ I ++VVLATNIAETSLTIEGI VVD Sbjct: 239 LQETLIGEDVSI--LHGSLTADVQQQVIRAG--ASKRVVLATNIAETSLTIEGIDTVVDT 294 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 +ER + + P+ +RL T +++++ QRAGRA R +PG + L +++ +R AA S P Sbjct: 295 GRERQSVYLPQYRDSRLTTAMIAKSNSEQRAGRAARQQPGRAYRLWSEDTQQRLAAYSPP 354 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQK 410 ++ +L+ L++++ WG ++ +++W P + AAK L +G L+ +RL+ GQ+ Sbjct: 355 DVATQELTDLIVQVKAWG-TEVEELNWFTPPDSALVEAAKDTLTDMGLLKEQRLTLAGQE 413 Query: 411 MAALGNDPRLAAMLVSAKN---DDEAATAAKIAAILEEP-PRMGNSDLGVA---FSRNQ- 462 +A G D RL+ + + A+ + + A+ A E+P R NSD ++ RN Sbjct: 414 VAGFGTDIRLSCIALHARGKLPEGKQRALAQWLATYEQPDKRFTNSDSVISAQQHFRNAT 473 Query: 463 --PAWQQRSQQLLKRLNV-RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAM 519 W +R + ++ R G I + FADRIA + D QLA+G + Sbjct: 474 RGSIWWKRFAYWCQVFSIERQGATQFEDIEEAVLFGFADRIAYQDRTD-EAQLASG-ARI 531 Query: 520 LDANDAL---SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEW- 575 D ++ + + IA L R++ L +D L+ + + + W Sbjct: 532 YDLQNSFGNRNNSSYFIATQLSLSEKQRHNRLIGYLSIDKHRLLSHPAVGLVEREVYNWT 591 Query: 576 DDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRL 635 D + +K ++ + + Q A + D L+ A+ + +R +GLS + W + L Sbjct: 592 KDGERLIKTSEQMCGALVLDRHQEPAALTRDALNDALTHWLRAEGLSAIGWNSGTAGLLA 651 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGM 695 RL + PE A + LL L W LP+ G+ SLR L+ +AL L + Sbjct: 652 RLQFLYRARPELFNIAPYETDLLEHLADWALPYWHGMTSLRQLRGWQPNEALLNTLTYEG 711 Query: 696 QQRLDSELPAHYTVPTGSRIAIRY----HEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 QQ LD P H+ P+G R+ I Y + P +A+++QE FGE +PT+ G+V + Sbjct: 712 QQLLDKWCPTHWLAPSGRRVIIDYPSGTESERSPKVAIKLQEAFGEVASPTVLNGQVAIA 771 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 ++LLSPA R LQ T DL+ FW+ Y+EV+KEM+GRYPKH WPDDP + T +TK+ Sbjct: 772 IDLLSPAGRLLQRTHDLASFWRSGYQEVKKEMRGRYPKHPWPDDPTHAIATVKTKR 827 >UniRef50_A8HQ16 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8HQ16_CHLRE Length = 830 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 303/852 (35%), Positives = 450/852 (52%), Gaps = 107/852 (12%) Query: 25 LSAPTGAGKSTWLPLQLLAHP-----GINGKIILLEPRRLAARNVAQRLAELLNEKPGDT 79 + AP GAGK+T +PL LL H G N KI++LEPRR+AA+ A+R+A L + G T Sbjct: 6 VQAPPGAGKTTVVPLALLRHNPEYLRGSNNKILVLEPRRVAAKGAARRMAASLRQNVGGT 65 Query: 80 VGYRMR-----------AQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHER 128 VGYR+R V TR+EVVTEG+L R +Q DPEL GVG V+ DEFHER Sbjct: 66 VGYRVRLDTKARMGDGGGGCGVSAATRIEVVTEGILLRRLQHDPELEGVGAVVFDEFHER 125 Query: 129 SLQADLALALLLDVQQGLRDDLKLLIMSATLD---NDRLQQMLPEAPVVISEGRSFPVER 185 +L AD+ALAL DVQ+ R DL+L++MSATL DR P+V+SEGR +PV Sbjct: 126 NLDADVALALCADVQRLARPDLRLVVMSATLGGGLGDRAGSNR-GVPLVVSEGRCYPVTT 184 Query: 186 RYLPLP-AHQR--FDDAVAVATAEMLRQE----------SGSLLLFLPGVGEIQR---VQ 229 ++L P A +R + AVA A LR G +L+F+PGVGEI+ +Q Sbjct: 185 KHLGRPDATERGALERAVADAVTMALRDGGAAESGDDGVGGDVLVFVPGVGEIRNCDWLQ 244 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +L R+ S ++C L+G ++ ++Q++ + R+V+L+T IAE+S+TI+G+ VVD Sbjct: 245 TRLKRRMVS--IMC-LHGNMAPDEQQQGNSARERRRRRVILSTPIAESSVTIDGVTAVVD 301 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R R+DP T + RL T R+S+AS QR GRAGR PG L ++ + A SE Sbjct: 302 SGLRRAPRYDPSTAINRLETIRISEASAEQRRGRAGRTAPGRCYRLWSERDS--LPAVSE 359 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG--ERLSAQ 407 PEIL +DL+ +EL WG D + + WLD PP + A + LL LGA+E R + Sbjct: 360 PEILTADLAPTALELALWGSPDGSGLPWLDPPPADLMEAGRELLLDLGAVEAGVGRPTPH 419 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ 467 G+ +A LG PR ++ + A AA +A +L G+ + P Sbjct: 420 GRLLARLGVHPRWGHAVLRGASQSCAELAAVVATML------GSERDVLRGGGGGP---- 469 Query: 468 RSQQLLKRLN--VRGGE----------------------ADSSLIAPLLAGAFADRIARR 503 RS ++ RL R GE + L+ L+A A+ DRIA R Sbjct: 470 RSADIMLRLEALARDGELGRGTGAASSAAAFDAAWREQLSREGLVGALVAAAYPDRIAER 529 Query: 504 RGQDGR---YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDA----------RILL 550 + + + + L++G +D L+ E++ + G P A I Sbjct: 530 KDRSNKRAAFTLSSGKAVHTVEDDPLASFEYVAVAEI--GGVGPAAAWRRDGGGNDSIRS 587 Query: 551 ALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQ 610 A + + + ++Q + + Q + +RL L+ + P+ S+D+ Sbjct: 588 AAGLSSLAIKRYLSDMIQVTACMRAGAKQVLGRRQKRLGCLVLSEQSAPV---SDDKAMP 644 Query: 611 AMLNGIRD-KGLSVLNWTAEAEQLRLRLLC-AAKWLPEYDWPAVDDESLLAALETWLLPH 668 A+L G ++ G+ ++ + E E R R++C AK L P + D LL + WL PH Sbjct: 645 ALLKGFKEMGGIRAVSLSKEVEAWRQRVICTTAKGLAAL--PDLSDTGLLNSAAKWLAPH 702 Query: 669 MTGV----HSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 ++G H+L LD A R L+ W +QQ +++E P H +PTG+R + Y D Sbjct: 703 LSGARSKSHNLPPPPGLD---ARRSLVPWELQQLVEAEAPTHLMLPTGTRALVDYSGDT- 758 Query: 725 PALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMK 784 P + ++QE+FG P +A GR+PL LELLSP +P +T DL+ FW+ +Y +V+K+++ Sbjct: 759 PCVRCKLQEVFGLPDTPRLAGGRIPLTLELLSPGGQPAAVTSDLASFWRNSYPDVRKDLR 818 Query: 785 GRYPKHVWPDDP 796 GRYPKHVWP+DP Sbjct: 819 GRYPKHVWPEDP 830 >UniRef50_A2C686 DEAD/DEAH box helicase:Helicase C-terminal domain n=7 Tax=Cyanobacteria RepID=A2C686_PROM3 Length = 853 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 310/855 (36%), Positives = 473/855 (55%), Gaps = 52/855 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA----HPGINGKIILLEP 56 M LP+ ++L +L +L + VLL AP GAGK+T +PL L+ H + G+I +LEP Sbjct: 1 MGDLPIDSLLTQLCHSLTASATVLLQAPPGAGKTTRVPLALMGALDGHTPLPGRIWMLEP 60 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RRLA + A RLA L E G+ VG+ +R + T+LEV+T+G+ R +Q DP L+G Sbjct: 61 RRLAVKAAASRLAASLKEPLGERVGFAIRHEQLRSKRTQLEVITDGLFLRRLQSDPSLNG 120 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS 176 + VI DEFHER +DLALALLL+ + L +L+LL+MSATL+ LQ LPEA ++ S Sbjct: 121 IDCVIFDEFHERRRDSDLALALLLEARPLLHPELRLLLMSATLNLGELQDRLPEATLLQS 180 Query: 177 EGRSFPVERRYL------PLPAHQ--RFDDAVAVATAEMLRQESG--SLLLFLPGVGEIQ 226 EG++FPV + PLP HQ R A A+ E + S ++L+FLPG EI+ Sbjct: 181 EGKAFPVATHHQTPRPDEPLP-HQVMRAIKAHALPLTEASDRTSSRPTVLVFLPGQREIK 239 Query: 227 RVQEQLASRIG-SDVLLCPLYGALSLNDQRKAILPAPQ-GMRKVVLATNIAETSLTIEGI 284 R QE LA++ + L L+G L+ Q +A+L A + K+VLA++IAE+SLT+EG+ Sbjct: 240 RTQELLAAQESLTHWNLAYLHGQQPLHVQARALLGAESPWIGKIVLASSIAESSLTLEGV 299 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 RLV+D R +RFDP TG+ L T S AS QR GRAGR PG + L + + R Sbjct: 300 RLVIDSGLSRQSRFDPNTGMEGLETVPSSLASANQRQGRAGRQSPGQCVRLWSLAEQLRK 359 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-R 403 + PE+L +D +++EL WG + W+D PP L ++ L L AL+ + R Sbjct: 360 PEHAPPEVLVADPMPVVLELAAWGAGLGETLPWIDPPPQSALQKGRQQLINLNALKHDGR 419 Query: 404 LSAQGQKMAALGNDPRLAAMLVSAKN---------------DDEAATAAKIAAILE---E 445 ++ G+ + LG PRL +L+ AK D + + ++ + L + Sbjct: 420 ITTLGRHLCKLGIHPRLGILLLQAKGWGCAALGAELAALLGDRDPLNSHQVGSDLRTRLD 479 Query: 446 PPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL-NVRGGE----------ADSSLIAPLLAG 494 R ++ + + ++ SQ+LL +L +R + ++ +L A L+A Sbjct: 480 WLRQDQREIHRSARQGHQQMRRLSQRLLGQLKTIRQDDQYSKQANKDLSEHALAAQLIAT 539 Query: 495 AFADRIA-RRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALL 553 AF + +A R G+ G Y+L G GA+L +D L L + G A+ ++ + L Sbjct: 540 AFPEWLALERPGKAGHYRLRQGRGAILRQHDPLRSSPALAVARVDLGQANTLIQLAIPLP 599 Query: 554 VDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAML 613 + E + + + S++V WD+ ++A R L+IG+L ++ + L +P + + +L Sbjct: 600 MQWVETLSQTDG--EWSESVSWDEKSSRIRAERLLKIGELLIQRERLPQPEPEHCRKILL 657 Query: 614 NGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVH 673 + + +GL L W ++QLR RL A + L WP D + L +WL + G H Sbjct: 658 DVLCHQGLGQLPWGRRSQQLRARLELAHRHL-GTPWPPRDLKFLGHQPSSWLNQPLLGCH 716 Query: 674 SLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQE 733 SL L + +AL G L W M+Q LD LP T+P+G R A+ + D L+V++QE Sbjct: 717 SLDELGEEGLIEALWGELPWEMRQTLDILLPNQLTIPSG-RSAVLNYGDGEVKLSVKLQE 775 Query: 734 MFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWP 793 MFG P + G++P+ LELLSPA R LQ+T DL+ FW +Y++V++EM+GRYPKH WP Sbjct: 776 MFGCEDGPKLINGKLPVTLELLSPAGRTLQLTTDLAGFWSDSYQDVRREMRGRYPKHPWP 835 Query: 794 DDPANTAPTRRTKKY 808 ++P T R KK+ Sbjct: 836 ENPRAAQATARIKKH 850 >UniRef50_Q1D7W0 ATP-dependent helicase HrpB n=3 Tax=Cystobacterineae RepID=Q1D7W0_MYXXD Length = 854 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 287/849 (33%), Positives = 448/849 (52%), Gaps = 63/849 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAA 61 +LP+ +LP++++ L A ++L AP GAGK+T +P LL A G +II+L+PRRL Sbjct: 5 ALPIDPLLPDIVSTLRGARSLVLEAPPGAGKTTRVPRALLEAGLGQGKEIIVLQPRRLPT 64 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R AQR++E L E+ G++VGY++R ++ TRL VTEGVL R + DP+L VG+V+ Sbjct: 65 RLAAQRVSEELGERVGESVGYQVRFEDVRSAKTRLSFVTEGVLGRRLLSDPKLRDVGIVV 124 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDEFHER L AD++LALL +Q+ R DLK+++MSATL+ + ++ L P + SEGR F Sbjct: 125 LDEFHERHLSADISLALLRRLQETARPDLKVVVMSATLEAEPIRAYLGGCPSLRSEGRRF 184 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQE---QLASRIG 237 V YLP P + D V + Q G +L+FLPG GEI+R ++ + A R G Sbjct: 185 DVSVEYLPAPDDRHLDQQVLSGIKRLFTQGVDGDVLVFLPGAGEIRRARDACAEFAERHG 244 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +DVL PL+G LS +Q +A+ + + RK++L+TN+AETS+TI+G+ +V+D RVA Sbjct: 245 TDVL--PLHGDLSPAEQDRAVRRSSR--RKIILSTNVAETSVTIDGVAVVIDSGLARVAS 300 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 P +GL L +VS+AS QR GRAGR G L L + + Q PEI ++DL Sbjct: 301 HSPWSGLPTLKLSKVSRASAIQRGGRAGRTRAGHCLRLYTQHDFDGRPEQDAPEIRRTDL 360 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 + ++ L G +D A + + PP +L AA+ LL+ LGA++ ++ G+++ Sbjct: 361 AETVLSLRASGITDLAAFPFFEPPPAASLDAAETLLRRLGAVDPAGTVTEVGERLLRFPV 420 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEE----------------PPRM--GNSDLGVAF 458 PR A ++V + A AA +AA++ E P + G SDL F Sbjct: 421 HPRQARIIVEGERRGVGAEAAVLAALMGERDIRREARANLGQGGRPAAVVSGPSDLLELF 480 Query: 459 SRNQPAWQ---------------------QRSQQLLKRLNVRG--------GEADSSLIA 489 R + A + R Q+ L+R VRG + + +L+ Sbjct: 481 ERFREAERANFASGRMHSLSLEAGAVQSVDRVQKQLRR-AVRGQGPRPQRPEDVEQALML 539 Query: 490 PLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARIL 549 +LAG + DR+ARRR L G G+ ++ ++ + L+ +G A + Sbjct: 540 SVLAG-YPDRVARRRRPRAPELLMFGGGSATLSDVSVVQDADLMVAADAEGRPGKGAVVR 598 Query: 550 LALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELH 609 LA V+ + L+ P +++ DT++W+ ++ RL G L ++ P+ + Sbjct: 599 LASAVEPEWLLDLYPDTLEEVDTLQWNAEARRVERLTRLSYGNLVLEETRTPAPASEATA 658 Query: 610 QAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHM 669 + ++ G EQ R R+ A PE +P +DD L AL + Sbjct: 659 RVLVEAALAAGPGKFADPEALEQWRTRVALLAGAFPEAKFPTIDDTFLRDALASL----C 714 Query: 670 TGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAV 729 + S + L+ + + AL L Q+ L + P T+P G + + Y PP + Sbjct: 715 SDARSFKDLEGVSLLDALYARLTSEQQRLLATHAPERVTLPGGRGVKVHYEPGKPPWVES 774 Query: 730 RMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPK 789 R+Q+ FG A P + GRVPLVL LL+P R +Q+T DL+ FW+ Y ++KE+ +YP+ Sbjct: 775 RLQDFFGMAQGPNVCAGRVPLVLHLLAPNMRAVQVTTDLAGFWERHYPAIRKELCRKYPR 834 Query: 790 HVWPDDPAN 798 H WP+DP + Sbjct: 835 HSWPEDPQH 843 >UniRef50_D2B686 ATP-dependent helicase HrpB n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B686_STRRD Length = 880 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 331/897 (36%), Positives = 465/897 (51%), Gaps = 117/897 (13%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL--LAHPGINGKIILLEPRRL 59 S LPV VLPELL ALD +L+AP G GK+T +PL L L ++I+ EPRR+ Sbjct: 6 SGLPVRHVLPELLAALDERGVAVLTAPPGTGKTTLVPLALAGLLDGSAPKRVIVAEPRRM 65 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A R A+R+A LL + G VG+ +R + GP T +EVVT GVL + +QRD EL GV Sbjct: 66 AVRAAARRMAWLLESEVGAEVGFTVRGERRAGPETVVEVVTTGVLLQRLQRDAELDGVDA 125 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQM------------ 167 V+LDE HER L AD ALA LLDV+ LR DL+L+ SAT D ++ Sbjct: 126 VLLDECHERHLDADTALAFLLDVRATLRPDLRLIATSATADAAPWARLLGSGAAGDHPAT 185 Query: 168 ---LPEAPVVISEGRSFPVERRYLP------LPAHQRFDDAVAVATAEMLR----QESGS 214 LP+AP+V + G PV + P P R D A A+++R + G Sbjct: 186 AVPLPDAPIVHASGAMHPVTPVWAPPARPVTPPRGLRVDPAFLSHVADVVRRALGEHGGD 245 Query: 215 LLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNI 274 +L FLPGVGEI RV L G DVL + D A+L +P R+VVLAT++ Sbjct: 246 VLCFLPGVGEIGRVAAMLH---GVDVLQVHGQAPARVQD---AVL-SPGENRRVVLATSV 298 Query: 275 AETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLH 334 AE+SLT+ G+R+VVD R R D GL L T R S+AS QRAGRAGR PG+ Sbjct: 299 AESSLTVPGVRIVVDSGLAREPRTDHARGLGSLTTVRASKASAVQRAGRAGREAPGVVYR 358 Query: 335 LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQ 394 ++ + +R ++PEI +DL+G ++ WG ++ LD PP + AA+R L Sbjct: 359 CWSQAEHDRLPEHAQPEIALADLTGFALQAACWGDPAATGLALLDPPPPAAMDAARRTLH 418 Query: 395 MLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP-PRMGNSD 453 LGAL+G R++A+G++MA G PRLA L+ D AA++ A+L E PR D Sbjct: 419 DLGALDG-RVTARGRRMAGAGVHPRLARALI-----DVGPRAAEVVALLSEQLPRDAGDD 472 Query: 454 LGVAFSRN--------QPAWQQRSQQLLKRL----------------------------- 476 L VA R+ W++ +++L + + Sbjct: 473 L-VAVWRSARRGDDGFSARWRRETRRLAQAVPREGRTPPPAGQDGRPRPAPAPAGQGGRP 531 Query: 477 ---NVRGGEADSSLIAPLLAG-------------------AFADRIARRRGQDGRYQLAN 514 GG S+ ++P AG A+ +R+ARRRG G Y +A+ Sbjct: 532 RPAPAPGGRDGSAGVSPPPAGRDRGPEPGDDAVAGLVVALAYPERVARRRG--GSYLMAS 589 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G A L L+ EWL + + + S AR+ A+++D + L + V Sbjct: 590 GTAAELPQGSRLASAEWLAVAVADRPAGSASARVRQAVVIDEEIARLAAAPLYGSGEEVV 649 Query: 575 W----DDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEA 630 W + +G + A R ++G + + A+ + ++ A+L G+R +GL+VL WT EA Sbjct: 650 WRVPPGERRGDVSARRVERLGAIELSS---ARLRDADVRPAVLEGLRTEGLAVLRWTPEA 706 Query: 631 EQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGL 690 LR RL + L + WPA DD++L+ A + WL P ++ V L+ LD+ AL L Sbjct: 707 VALRERLAFCHRALGD-PWPATDDDALIGAADLWLEPELSRVRRRSDLERLDVTSALHRL 765 Query: 691 LDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPL 750 + W RL P VP+GSRI I Y D P LA ++QE+FG P +A VPL Sbjct: 766 VPW--SARLADTAPERIEVPSGSRIRIDYSGDQ-PVLAAKLQELFGWDEAPRVAG--VPL 820 Query: 751 VLELLSPAQRPLQITRDLSDFWKG-AYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 V+ LLSPA RP +T DL+ FW+G YR V+ E++GRYPKH WP+DP + TRRT Sbjct: 821 VIHLLSPAGRPAAVTADLASFWRGEGYRSVRAELRGRYPKHPWPEDPLSAVATRRTN 877 >UniRef50_Q7UT94 ATP-dependent helicase n=1 Tax=Rhodopirellula baltica RepID=Q7UT94_RHOBA Length = 846 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 296/839 (35%), Positives = 442/839 (52%), Gaps = 58/839 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP---LQLLAHPGINGKIILLEPR 57 M+ LP+ VL L TA+D V+L AP GAGK+T +P LQ L + G+I +++PR Sbjct: 18 MNRLPIEDVLSPLQTAIDSGNAVVLKAPPGAGKTTGVPPAVLQTLLDNDVAGQIWVIQPR 77 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 RLAAR+VA +A NE G+T+GY +R +TR+ +T G+ R +Q DP L V Sbjct: 78 RLAARSVADWIARSRNESIGETIGYHVRLDRRESKSTRVLFMTTGMFLRRMQSDPLLENV 137 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----AP 172 VILDEFHER+L+ DLALA+ ++ LRDDL L++MSAT++ + + + L E A Sbjct: 138 ACVILDEFHERTLELDLALAMTHRLRSELRDDLGLVVMSATMETEPIVEYLNEVHSQNAV 197 Query: 173 VVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 + EGR+FPV Y +R + + + L SG +L+FLPGVGEI+RVQ +L Sbjct: 198 SLRCEGRAFPVSVHYGEDQPGERIERRMVKPIRDALESSSGHVLVFLPGVGEIRRVQSEL 257 Query: 233 AS-RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 + +DV L+G+LS Q +AI P+ RKVVL+TNIAETS+T+ G+ VVD Sbjct: 258 ERVDLPNDVRTVVLHGSLSPKQQDEAIRPSAD--RKVVLSTNIAETSVTVNGVTAVVDSG 315 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 +V RFD R GLT+L T +S AS QR+GRAGR PG + L ++ PE Sbjct: 316 MAKVPRFDSRRGLTKLETTSISLASADQRSGRAGRTAPGEAYRLWSQAAQRSRDEYDVPE 375 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQK 410 IL+SDLS +++ L G +D M WL PP ++ A+ LL+MLGA+ E R++ GQ Sbjct: 376 ILRSDLSEVVLMLASHGETDLHAMQWLTAPPEHSVETAQALLRMLGAIDESGRITRAGQV 435 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAI------LEEPPRMGNSDLGVAFSRNQ-- 462 MA + PR+A M A ++ A +AA+ LE+ M +D A N+ Sbjct: 436 MAEMPLHPRIARMTTEAVGSLPRSSVAILAALMSERDPLEDMTSMTLADKVDAIENNRVP 495 Query: 463 ---PAWQQRS----QQLLKRLNVRG----GEA---DSSL-IAPLLAGAFADRIARRRGQD 507 A+ +S + ++R G GEA D + +A L A+ DR+ RR Sbjct: 496 RSVSAFSIKSLRSVAETIRRSLPEGEPGQGEAAKMDRDVAVARALLSAYPDRVVLRRADS 555 Query: 508 ---GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 GR G+ + A E L+ + G + ++R+ A+ + + L Sbjct: 556 PDRGRMVGGRGVSGLTRALGEGVNEELLLC-FDVDGGGT-ESRVRAAVPIQEEWL---DG 610 Query: 565 QLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL 624 ++V T WD +G ++ R++ G L ++ P P ++E + + + + + Sbjct: 611 EMVHTVQTQSWDAERGAVRCRRQVTYGDLILRETPAKVPGDEETASILFDNAK---MQLP 667 Query: 625 NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDE--SLLAALETWLLPHM-TGVHSLRGLKSL 681 A+ ++L R+ + VDD+ S+ A+ LL M G SL+ L+S Sbjct: 668 LGGAKFQKLLHRIEMVGE---------VDDQVPSVTEAMHLELLRQMCVGRSSLQELRSA 718 Query: 682 DIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNP 741 + G + + Q + E P +P G ++A+ Y E PP + V++Q FG P Sbjct: 719 PWKDHVLGTIGYSAWQIVQEEAPEEVQLPGGRKVAVHYVEGKPPWIEVKIQLCFGWPETP 778 Query: 742 TIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTA 800 I +GR PL L LL P RP QIT DL+ FW Y E++KE++ RYPKH WP+DP + A Sbjct: 779 RILRGRQPLQLHLLGPNGRPQQITNDLASFWGSTYGEIRKELRRRYPKHDWPEDPLSAA 837 >UniRef50_Q1N1U8 ATP-dependent helicase HrpB n=1 Tax=Bermanella marisrubri RepID=Q1N1U8_9GAMM Length = 824 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 274/841 (32%), Positives = 434/841 (51%), Gaps = 51/841 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 MS+ P+++ + ++ +L QV+L+AP G GKST LPL L+ P + G+I LLEPRRL Sbjct: 1 MSAYPISSHIDDIAKSLANHGQVILAAPPGTGKSTVLPLSLMEQPWLAQGQIWLLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA+ VA+RL++ L+E G ++G + ++ V+TEG+LT+ + ++ +++ L Sbjct: 61 AAKQVAKRLSQQLSEPLGQSIGLITGEDAKTSNSNKVVVMTEGILTQKLIQENDINNCAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHER+L DL LAL+ ++ LR+DLK LIMSATL+ DRL + L +AP++ + Sbjct: 121 IIFDEFHERNLATDLNLALIQQCREILREDLKCLIMSATLEIDRLSEAL-QAPLIEVNTK 179 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 ++ Y A V A + L Q G L+FLPG+ EIQ V+ L + Sbjct: 180 IHELDILYQIKNASDNLSQQVNRA-CQSLNQFKGDTLVFLPGLSEIQHVKSALIESGKNP 238 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + L+ + Q+ L K++LA++IA+TSLTI I VVD ER+AR++ Sbjct: 239 DHIFILHSSTPQKQQQA--LFEDTDFEKIILASDIAKTSLTIPSITKVVDSGLERIARYN 296 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 TG+ LIT S+A+M QRAGRAGR + G + L +++Q R +A S I Q DLS Sbjct: 297 ANTGMDELITIEASKATMLQRAGRAGRTQHGRVIRLGSEDQFSRRSAFSPIAIEQEDLSA 356 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGNDP 418 + L WG ++ + L++P N A +LL L AL E R++ G+++A G P Sbjct: 357 FALALSTWGSTELSDYLLLNKPNSRNYDQALQLLHNLDALDERFRVTDHGKQLAMKGIHP 416 Query: 419 RLAAMLVSAKND-DEAATAAKIAAILEEPPRMG----NSD-------------------- 453 RL+ ML + D + A IAA+L E + NSD Sbjct: 417 RLSHMLHHFHDQPDMLSLACIIAALLTEGDFLQTPALNSDLQLRIELITEQLLHNKTHGG 476 Query: 454 -LGVAFSRNQPAWQQRSQQLLKRLNVRGGEA---DSSLIAPLLAGAFADRIARRRGQDGR 509 LG N +R ++L+K+ + + + + +LA A+ DRIA++RG+ Sbjct: 477 RLGRINQANLSRIIKRYKKLVKQFEHQTKQEIQWHDTDVGRVLAQAYPDRIAQQRGRG-- 534 Query: 510 YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 Y+L NGMGA + D+ ++++ + + I LA ++ + Sbjct: 535 YRLQNGMGASIHTKDSAKHSDYMVIAATASSAYDNNQFIKLATAIEKQTIENEFAHHTSL 594 Query: 570 SDTVEWDDA--QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWT 627 D + T + + L + T P ++ + + G+ ++ Sbjct: 595 DTHFLMKDKLFKVTTEKFGELILNTTTSPANP------EDFKFYIRQEVIKNGIEYFDFN 648 Query: 628 AEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQAL 687 + L +L A P+ ++P+ DE L+ +++ WLLP +T VH L ++D + AL Sbjct: 649 DSQQALLNKLNLAHSLFPD-NYPSFADECLINSIDDWLLPFITDVH----LCNMDYHNAL 703 Query: 688 RGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGR 747 +DW QQ + P +T+P+G I Y +D + ++QE FG IA+ R Sbjct: 704 LSRMDWSKQQAFKQDFPQEFTLPSGRTTQIHYEKDK-AIVKAKLQECFGLTGIQKIAKNR 762 Query: 748 VPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 +PL LLSPAQRPL T+D FWK Y EV+KE +GRY KH WP+DP + + +TK+ Sbjct: 763 LPLEFHLLSPAQRPLAQTKDFDFFWKEVYPEVRKENRGRYAKHPWPEDPLSAIASHKTKR 822 Query: 808 Y 808 + Sbjct: 823 H 823 >UniRef50_B1ZU70 Helicase ATP-dependent domain protein n=5 Tax=Verrucomicrobia RepID=B1ZU70_OPITP Length = 865 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 288/882 (32%), Positives = 440/882 (49%), Gaps = 116/882 (13%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP--GINGKIILLEPRRLAA 61 LP+ + +++A+ ++++ APTG+GKST +P LL H G G++++L+PRRLAA Sbjct: 6 LPIYELESAVVSAVRAHGRLIVQAPTGSGKSTQIPQMLLQHGLLGERGEVVVLQPRRLAA 65 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R +A+R+AE + + GDTVGY++R ++ V TR+ VTEG+L R + D L GV V+ Sbjct: 66 RLLAKRVAEEMGSRLGDTVGYQIRLESRVSDRTRIRFVTEGILLRQMSFDASLRGVSAVV 125 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 DEFHER L D++LA L +QQ R DLK+L+MSATLD LQ L ++S+GRSF Sbjct: 126 FDEFHERHLYGDISLARALQIQQSTRPDLKILVMSATLDAGALQTYLAPCETLVSQGRSF 185 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLR---QESGSLLLFLPGVGEIQR-VQEQLASRIG 237 PV YLP + D VA E R ++G +L+F+PG EI R VQ SR Sbjct: 186 PVRIEYLPKTVNFDHDAVWDVAARECERIATTQAGDMLVFMPGAYEISRTVQAIQGSRAL 245 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 D + PL+G L + Q +A+ A RK++++TN+AETSLTIEG+ V+D R+AR Sbjct: 246 RDCVCFPLHGELPPDAQDRAV--ARYDTRKIIVSTNVAETSLTIEGVTAVIDSGLARMAR 303 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP G+ L+ +++S AS QRAGRAGR PG+ + L + + + A Q PE+ + DL Sbjct: 304 FDPHRGINTLLIEKISAASADQRAGRAGRTAPGVCVRLWTEREHAQRAPQELPEVKRLDL 363 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-------------EG--- 401 + +++ L G D A WL++P L A+ LL LGA+ EG Sbjct: 364 AEVVLTLKASGIDDVANFPWLEKPDPKALERAEMLLADLGAIGAATPSSRQDRRDEGVAP 423 Query: 402 ---ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAF 458 ++ G+KM PR A ML++A+ A +AA+ + G S L Sbjct: 424 PGETSITDVGRKMLRFPVHPRYARMLLAAQERGCVRPVALMAALTQ-----GRSFLLRGV 478 Query: 459 SRN--------------------QPAW-----QQRSQQLLKRLNVRGGEA---------- 483 SR+ AW S + +RL + A Sbjct: 479 SRDVDDAREDALGEEHESDFFLLMRAWSYADRSNYSLEACRRLGIHAQAARQVGPLFQQF 538 Query: 484 ----------------DSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDAL 526 +SS + + F+D +A+R R +L + +L A+ Sbjct: 539 LEIAEKEGLDVGERRVESSDVRKCVLAGFSDHLAKRLDAGTLRCELVHQRRGLLARESAI 598 Query: 527 SRHEWLIAPLLLQGSASP------DARILLALLVDIDE--LVQRCPQLVQQSDTVEWDDA 578 + APLL+ S + +LL+L I+E L + P +Q+ V +D+ Sbjct: 599 HK-----APLLVAAEISEVEGRGGEINVLLSLATAIEEPWLEEIFPDDYRQTRGVVYDEQ 653 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDE--LHQA---MLNGIRDKGLSVLNWTAEAEQL 633 + + R + L ++ AK S DE L++A + + + + W EQ Sbjct: 654 AKRVVSRRERRFRDLVLE----AKVSGDEAPLNEAAALLTKEVLAGRIKLEAWDEAVEQW 709 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW 693 R+ A+W PE + + D +E G S R ++ + LR DW Sbjct: 710 ITRVNRMAEWFPELEVNPITDADRATLIEQVCY----GELSARDVRDKPVMPVLR---DW 762 Query: 694 GMQQR---LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPL 750 Q++ LD LP T+ G R +RY D PP L+ R+QE++G TI GRVP+ Sbjct: 763 LTQEQLAVLDDYLPERLTMANGRRSKLRYENDGPPILSARIQELYGINGKFTIGHGRVPV 822 Query: 751 VLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 +E+L+P QRP+Q+T DL++FW+ Y +++ E+ RYP+H W Sbjct: 823 KIEVLAPNQRPIQVTDDLTNFWREQYPKIKTELSRRYPRHEW 864 >UniRef50_A9FJ06 ATP-dependent RNA helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FJ06_SORC5 Length = 907 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 317/914 (34%), Positives = 450/914 (49%), Gaps = 123/914 (13%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRL 59 M LP+ +LP+L AL P V+L AP GAGK+T +P LL A G+I++LEPRRL Sbjct: 1 MQPLPIDPILPDLCAALRARPSVVLEAPPGAGKTTRVPRALLDAGFAERGEILVLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+AE L E+ G+TVGY MR + P TR+ VTEGVLTR + D EL GV Sbjct: 61 AARLSARRVAEELGERVGETVGYTMRFEEASSPATRVRFVTEGVLTRRLLVDRELRGVSA 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD------------------- 160 V+LDEFHER L D+ALALL +Q+G R DL+L++MSATLD Sbjct: 121 VVLDEFHERHLAGDVALALLRRLQRGARPDLRLVVMSATLDAGPIAAFLGGPEAQPAPAA 180 Query: 161 -----NDRLQQMLPEAPVVISEGRSFPVERRYLPL---------------PAH--QRFDD 198 +D AP + +EGR F V YLP PAH R + Sbjct: 181 EAERGHDTTSAGASVAPTLRAEGRMFDVAIEYLPSARVSASTHAAGDRRGPAHWGDRTLE 240 Query: 199 AVAVATAEMLRQES--GSLLLFLPGVGEIQRVQEQLASRIGS-DVLLCPLYGALSLNDQR 255 ++ ++ L +E G +L+FLPG EI+R E A+ S D+LL PL+G+LS +Q Sbjct: 241 SLVASSVRQLIEEGLDGDVLVFLPGSAEIRRAMEACAAIAKSEDLLLLPLHGSLSAAEQD 300 Query: 256 KAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQA 315 +A+ PA + RK++L+TN+AETS+TI+G+ VVD RVA P +GL L +++A Sbjct: 301 RAVRPADR--RKIILSTNVAETSVTIDGVVAVVDSGLARVAAHAPWSGLPTLRVAPIARA 358 Query: 316 SMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQM 375 S QRAGRAGR PG L L + PEI + DL+ ++EL G +D Sbjct: 359 SAAQRAGRAGRTRPGRCLRLYTRGDLASRPEHEAPEIRRLDLAETVLELCAAGVTDLEAF 418 Query: 376 SWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 WL+ PP L AA+ LL LGAL EG R++ G++M PR A M+V A+ A Sbjct: 419 GWLEAPPAAGLAAAEALLVRLGALDEGRRVTPTGRRMLRFPAHPRQARMIVEAERRGVAC 478 Query: 435 TAAKIAAILEE----------------PPRMGNSDLGVA-----------FSRNQPAW-- 465 +AA++ E +SDL A F+ ++ W Sbjct: 479 DGCTLAALVAERDLGAPSGAREPHGRRSDARHSSDLLAALQAFEEADRARFAADRLRWLG 538 Query: 466 --------QQRSQQLLKRLNVRGGEADSSLIAP--------------LLAGAFADRIARR 503 +R+++ L RL AD AP +L+G + DR+ R Sbjct: 539 VDPARALTVERTRKQLSRL------ADHRSAAPPETVEAREIAQRIAILSG-YPDRVGRL 591 Query: 504 R------GQDGR-YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILL--ALLV 554 R G+ GR LA G A L + + ++A + + S AR ++ A + Sbjct: 592 RRPTSATGRTGREVVLAAGGTAALSEASVIDEVDLVVAVDIEERSEGRSARTVVRAASAI 651 Query: 555 DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTV-KVQPLA---KPSEDELHQ 610 + D L+ ++ + W+ A ++ RRL L + + +P A P + + Sbjct: 652 EADWLLDLFTDAIRDTTEAAWNAAAERVEVVRRLSYDALVLDEARPAAGAGGPLAEAAAR 711 Query: 611 AMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMT 670 + R KG + LR+ P+ P V ++++LA LE Sbjct: 712 ELAAQARAKGWRAFVKGDALDSWLLRVAFVRAHCPDAALPDVGEDAVLATLEAL----CD 767 Query: 671 GVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVR 730 G S L+ D+ A++ L + L P +P G R + Y PP+LA R Sbjct: 768 GRRSFAELRDADLSSAVQASLGPAKARALAELAPESIVLPGGRRARLEYTAGAPPSLASR 827 Query: 731 MQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKH 790 +Q+ FG A P +A GRVP+VL L +P QRP+Q+T DLS FW Y + KE++ RYPKH Sbjct: 828 LQDFFGMAEGPRVAGGRVPVVLHLCAPNQRPVQVTTDLSGFWARHYPAIAKELRRRYPKH 887 Query: 791 VWPDDPANTAPTRR 804 WPDDPA+ AP R Sbjct: 888 AWPDDPAHAAPPSR 901 >UniRef50_D1Y978 ATP-dependent helicase HrpB n=3 Tax=Propionibacterium acnes RepID=D1Y978_PROAC Length = 838 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 434/837 (51%), Gaps = 53/837 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LPVAA E+ TAL V++ AP G GK+T++P + + +G++I+ +PRR+AA Sbjct: 19 AGLPVAAYRDEITTALHGGRAVIV-APPGTGKTTFVPPLVASR--CSGRVIVTQPRRVAA 75 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R A+RLA L +PG+ + + ++ +T++E VT GVL R + DP+L+GV V+ Sbjct: 76 RAAARRLAALTGTRPGEFASHTVHGESTTTRDTKVEFVTTGVLLRRLLSDPDLTGVDAVV 135 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML---PEAPVVISEG 178 LDE HER L ADL +A++ +V Q LRDDL ++ MSAT+D+ L APVV Sbjct: 136 LDEVHERHLDADLVVAMVCEVAQ-LRDDLTIVAMSATVDSSGWAAFLGGVEPAPVVEVAS 194 Query: 179 RSFPVERRYLPLPA--------HQRFDDAVAVATAEML-RQESGSLLLFLPGVGEIQRVQ 229 +E + P + F + T + L R GS L+F+PG E+ V Sbjct: 195 ALHELEVEWAPAAGAAVESRGVSREFLGHLGTVTVDALDRHTEGSALVFVPGAREVDHVV 254 Query: 230 EQLASRI-GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 L SR+ G DV+ L GA+S +Q A L P +R+V+++T +AE+SLT+ G+RLVV Sbjct: 255 ADLRSRLAGIDVV--GLSGAMSAREQDHA-LSDPGNVRRVIVSTAVAESSLTVPGVRLVV 311 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D R R D G+T L+T R S+AS QRAGRA RL PG+++ + + A Sbjct: 312 DSGLSREPRLDRGRGMTGLVTVRESRASAVQRAGRAARLGPGVAVRCLRAQDWAGMNADP 371 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQ 407 PE+ +DL L+ L WG M+ P + AA+ L+ LGA++ E R++ + Sbjct: 372 TPEVDHADLVASLLSLAVWGSPRGEGMALPTPLPQDRVAAAEEELRDLGAVDAEGRITVR 431 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL--EEPPRMGNSDLGVAF----SRN 461 G+ +A DPRLA L + A+IAA+L E+ G DL + S Sbjct: 432 GRHLATFPLDPRLARALTDGAAIVGSRRCAEIAAMLGLED----GQVDLVGQWRQLRSGR 487 Query: 462 QPA---WQQRSQQLLKRLN--VRGGEADSSLIAPLLAGAFADRIARRRGQ-DGRYQLANG 515 P W++ + +L + +N D +A +++ A IAR RG+ Y LA G Sbjct: 488 HPEAVMWRREADRLARLINDVPPTDITDDDAVATVVSLARPGWIARSRGEGSASYLLACG 547 Query: 516 MGAMLDAN--DALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTV 573 G L N L WL + + A I A+ + ++ ++ TV Sbjct: 548 TGVDLPRNCPPGLLGQPWLA--VARTSRITSGALIRAAVPLSESAALESGEAMLTSDTTV 605 Query: 574 EWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQL 633 WD G ++ R L++G + + P+ +P L +R GL V + T E L Sbjct: 606 TWD--GGKVRGRRVLRLGAIELSSTPV-RPDPVRARHVALEAVRSGGLDVASLTKNGESL 662 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW 693 R RL A + + WP V DE+LLA E WL + +L + D LRGLL W Sbjct: 663 RRRLALAHRVFGD-PWPDVSDEALLARAEEWL-----DLDALAAGRGSDATSGLRGLLGW 716 Query: 694 GMQQRLDSELPAHYTVPTGSRIAIRYHE---DNPPALAVRMQEMFGEATNPTIAQGRVPL 750 RLD +P TVP+GSRI I Y E D P LAV++QE FG A PT+ GRV + Sbjct: 717 RESARLDEVVPETITVPSGSRIRIDYPEPGSDTSPVLAVKLQECFGWADGPTVCDGRVRV 776 Query: 751 VLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 VL LLSPA+RPL +T DL+ FW Y V+ E +GRY KH WP+DP PT+RT + Sbjct: 777 VLHLLSPARRPLAVTDDLASFWASVYPAVRVENRGRYSKHPWPEDPMTATPTKRTNR 833 >UniRef50_C2CSI0 ATP-dependent helicase n=2 Tax=Corynebacterium RepID=C2CSI0_CORST Length = 758 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 282/815 (34%), Positives = 417/815 (51%), Gaps = 76/815 (9%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL---AHPGINGKIILLEPRR 58 + LPVA E + L + V++ AP G GK+T +P L A +GKI++ PRR Sbjct: 9 AGLPVA----ETIGTLPSSGNVVVQAPPGTGKTTLVPPALANQAAEQDTSGKILVTAPRR 64 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +A R A RL L G +GY +R + G + +E VT GVL R + RDPELSGV Sbjct: 65 VAVRAAANRLQHL----SGQQIGYAVRGDSRHGRD--VEFVTPGVLLRRLLRDPELSGVS 118 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V +DE HER DL L + L++ Q LRDD +++ MSAT+D R +++ +APV ++E Sbjct: 119 AVAIDEVHERQCDTDLVLGMCLELAQ-LRDDFRVIAMSATVDAQRFSELM-DAPVHVTEA 176 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 ++P++ RY P + A SGS+L+F+PGV E+ V EQL Sbjct: 177 VTYPLDIRYSPAAGRAAGERDFYAHVARQATGHSGSVLVFVPGVREVNLVCEQLPGAY-- 234 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 PL+G + +Q A+ ++V+AT+IAE+SLT+ G+R VVD R R Sbjct: 235 -----PLHGQQTTAEQDAALY---TDADRIVVATSIAESSLTVPGVRTVVDAGLSRTPRR 286 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 D + G++ L+T S++S QRAGRAGR PG + +++ + + PEIL +DL+ Sbjct: 287 DAQRGMSGLVTVSTSKSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHITPEILSADLT 346 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDP 418 + L WG + LDQPP L A R L+ +GA +++A L DP Sbjct: 347 QAALFLECWGAGE--DFPLLDQPPARALADAHRTLRSIGA-----TGDVAKQLALLPTDP 399 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 RL A L+ A AA A L + PR G+ +R P +R + L RL Sbjct: 400 RLGAALLK-----YGAGAAHTVAALSDSPR-GD------ITRITP--PKREVERLARLVP 445 Query: 479 RGGEADSSLIAPLLAGAFADRIARR--RGQDGRYQLANGMGA-MLDANDALSRHEWL-IA 534 G AD + +A AF +R+ARR ++ Y LA+G A ML+ N A WL +A Sbjct: 446 DKGPADPGAV---VAAAFPERVARRATSAKEAEYLLASGTRARMLEDNGA----AWLAVA 498 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLT 594 + L + + ++ IDE C + ++ + G ++ + L+ G + Sbjct: 499 DVSLSNAGN----AIIRAAARIDEQAALC--AIGTTEEITATLEGGKVRGRKVLRAGAIE 552 Query: 595 VKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL--LCAAKWLPEYDWPAV 652 + P+ K + +A+ GIRD GL++ +++ +A+ LR RL L A P WP V Sbjct: 553 LSSTPV-KVTGAAAEEALAAGIRDHGLAMFSFSEKAQNLRERLAHLHAHYGAP---WPDV 608 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTG 712 D+ A WL P + V + + +D+Y AL+ LL W RLD P VP+G Sbjct: 609 DN----AEPAEWLGPELHDVAAGKPATKVDMYPALQRLLPWPEATRLDELAPERLPVPSG 664 Query: 713 SRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFW 772 I + D P +++++QE FG A +P RV LLSPA RPL +T DL+ FW Sbjct: 665 RDAKIDWSGDR-PTVSIKLQECFGLAESPVYCGQRV--QFHLLSPAGRPLAVTDDLASFW 721 Query: 773 KGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 G Y+ V+ +M+GRYPKH WP+DP T RTK Sbjct: 722 AGPYQGVRADMRGRYPKHPWPEDPWTAPATARTKN 756 >UniRef50_B7A9M0 ATP-dependent helicase HrpB n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A9M0_THEAQ Length = 753 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 303/780 (38%), Positives = 419/780 (53%), Gaps = 63/780 (8%) Query: 30 GAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNC 89 GAGKST PL+LL + G+I+L EPRR+AAR VA RLAE L E G TVGYR+R + Sbjct: 24 GAGKSTLFPLRLLK--ALPGRILLFEPRRVAARAVAARLAENLGEPLGKTVGYRVRLEGR 81 Query: 90 VGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDD 149 TRL V+TEG+L R++ DP L GV V+LDE HER L+ DLALALLL VQ+ +R D Sbjct: 82 ESRETRLLVMTEGLLLRLLLEDPTLEGVSAVLLDEAHERHLEGDLALALLLKVQETIRPD 141 Query: 150 LKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLR 209 LKL +++AT D D L + L + V+ EG PVE +L P + A Sbjct: 142 LKLALLTATPDED-LNRAL-KGEVLALEGEGHPVEVFHLDRPPQGPLEALAARYARRAFL 199 Query: 210 QESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVV 269 + G +L+FLPG EI+R + L D+ PL+G L L +Q + P P RK+V Sbjct: 200 EGEGDVLVFLPGKAEIERTRSLL-----QDLPAFPLHGGLPLKEQAALLRPGP---RKIV 251 Query: 270 LATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEP 329 LAT++AETSLT+ +R VVD + RFDPRTGLTRL R+ + S QRAGRAGR P Sbjct: 252 LATDVAETSLTLPNVRAVVDTGLAKKPRFDPRTGLTRLALVRIPEESARQRAGRAGRTGP 311 Query: 330 GISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAA 389 G L E PEIL++DLS L+ L +G ++ +PP L AA Sbjct: 312 GRVFRLY----PEGPFPPKRPEILEADLSRALLLALAFGERL-EELPLPTKPPQGALEAA 366 Query: 390 KRLLQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM 449 LL++LGA+EGE L+ G++M L PRLA + + A+ + AA + A+LEE Sbjct: 367 WNLLRLLGAVEGEALTPLGKRMLTLPTHPRLARLALEAEKEGLLPLAADLMALLEE-GLE 425 Query: 450 GNSDLGV-------AFSRNQPAWQQRSQQLLK-RLNVRGGEA--DSSLIAPLLAGAFADR 499 G DL V A +P +R+ L + RL +A + LL A+ DR Sbjct: 426 GEKDLMVHLEALLEARRAGRPTRAERASALWRGRLGAPPLKALPHPEEVGRLLMAAYPDR 485 Query: 500 IARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDEL 559 A R GRY+L G L+ +L+A G + R+LL + ++L Sbjct: 486 AAERLA-PGRYRLVTGPALRLEGGPP-----YLVAVGAELGER--EGRVLLYAPLSREDL 537 Query: 560 VQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL--AKPSEDELHQAMLNGIR 617 ++R + + W++ G L+ + ++G L ++ P+ P+ L +A+ Sbjct: 538 LKRA----EVALWTGWEE--GRLRGYLERRLGALVLERLPVDPGPPTAQHLKEAL----- 586 Query: 618 DKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRG 677 KG + L E LRLR L A E + P+++D S WLLP GV L Sbjct: 587 -KGFA-LPEEGEEVLLRLRFLKAHGV--EVEAPSLEDPS-------WLLPWAQGVRRLED 635 Query: 678 LKSLDIYQALRGLLDWGMQQRLDSEL-PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFG 736 LK+L + L L G ++ L L P +P G R +RY E PP L++R+QE FG Sbjct: 636 LKALPWKEML--LSHLGEKRALVERLAPESLPLPNGRRKRLRYREGAPPVLSLRVQEAFG 693 Query: 737 EATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 P + +GRVP+V+ELLSPA RP+Q+T+DL FW+ Y EV+KE+ RYPKH WP+ P Sbjct: 694 LKETPRVLEGRVPVVVELLSPAGRPVQVTQDLQSFWEKRYPEVRKELMRRYPKHPWPEKP 753 >UniRef50_C5SLZ8 ATP-dependent helicase HrpB (Fragment) n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SLZ8_9CAUL Length = 676 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 246/681 (36%), Positives = 377/681 (55%), Gaps = 34/681 (4%) Query: 151 KLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDD----AVAVATAE 206 +LL+MSATLD +R++ +LP+A V S GR+FPV Y R ++ VA A+ Sbjct: 1 RLLVMSATLDGERVRGVLPDAEVFHSLGRAFPVTTHYTGRDQTLRLEEDVAKVVARVAAK 60 Query: 207 MLRQESGSLLLFLPGVGEIQRVQEQLASR-IGSDVLLCPLYGALSLNDQRKAILPAPQGM 265 + + + ++L+FLPG GEI RV LA + + + + LYGA+ DQ + + Sbjct: 61 LTPERAETMLVFLPGQGEIHRVATLLAEKSLSPAIEVHKLYGAMEAKDQTRVLAKNAPAT 120 Query: 266 RKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAG 325 ++VLAT IAETSLT++ + +VVD R+ RFD G+ R++T+RVS+A+ QR GRAG Sbjct: 121 PRIVLATAIAETSLTLDKVSMVVDSGVARLGRFDAARGVVRMVTERVSKAAADQRRGRAG 180 Query: 326 RLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVN 385 R + G L +E + PEIL +DLS L+++L WG ++ LD PP Sbjct: 181 RTQAGDCYRLWDEENDRSLIPFARPEILDTDLSRLVLDLRVWGAKSTEGLALLDHPPKAA 240 Query: 386 LLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE 444 L A+++L+ L L+ + ++ G+ + L PRL ML+ A D + A +A +L Sbjct: 241 LQEAEKVLRGLDILDAKGEVTPHGRLVGRLPMSPRLGHMLLLAARDGLSDQGAALAVLLS 300 Query: 445 EPPRMGN-SDL-----GVAFSRNQP---------AWQQRSQQLLKRLNVRGGEADSSL-- 487 E G +DL G++ R+ W + + QL++ L A +S+ Sbjct: 301 ENGLAGKATDLDLRLEGLSKERSPKVTQARQLAQTWARLAGQLVRDLPKDAKSAQTSVKS 360 Query: 488 IAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDAR 547 + LLA F +R+A+ RG+ G + +ANG G +D +D L+R + +A L G A D Sbjct: 361 VHALLAECFPERVAKARGKAGEFVMANGRGVYVDEHDPLARAAY-VAVGDLGGGAGRDRV 419 Query: 548 ILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDE 607 +L A L + + L +L +++ ++ G +A +++ G+L + QPL + Sbjct: 420 LLGAALSEAEVLTLFADRLEKRTVLERFN---GRYRALAQVRFGELILSSQPLPSVPPEL 476 Query: 608 LHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD--WPAVDDESLLAALETWL 665 L +A IR KGL VL ++ AE LR R+ +L D WP + DE+LL+ L WL Sbjct: 477 LIEAEAEEIRTKGLKVLKFSENAESLRARV----NFLHAQDSTWPDMSDEALLSGLADWL 532 Query: 666 LPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPP 725 P+ G L L + D+ QAL G LD+ Q+ LD+ P H+ +PTGS I I Y + P Sbjct: 533 GPYAAG-RPLLSLSASDVSQALLGRLDYEQQRALDALAPEHWRMPTGSNIRIDYGAEGGP 591 Query: 726 ALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKG 785 L VR+QE++G +P + R PL L LLSPA RP+QIT++L FW G++ EV+ +MKG Sbjct: 592 RLEVRVQELYGVTQHPVVGPQRTPLTLALLSPAHRPIQITKNLPAFWDGSWAEVRSDMKG 651 Query: 786 RYPKHVWPDDPANTAPTRRTK 806 RYP+HVWP++P + PT R K Sbjct: 652 RYPRHVWPENPRDADPTTRAK 672 >UniRef50_Q6MIP3 Helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIP3_BDEBA Length = 847 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 274/851 (32%), Positives = 444/851 (52%), Gaps = 60/851 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ + +PE+ + L ++++A GAGK+T LP LL + K+I+LEPRR+AA Sbjct: 8 LPIDSFVPEIQSLLKNGQNLVITAAPGAGKTTRLPPALLQ--VTSKKVIVLEPRRMAAIA 65 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A R+AE + G+ +GY++R N TRL +TE +L R + DPELS V LVILD Sbjct: 66 AAHRIAEEQGWQVGEEIGYQVRFANKTSNKTRLVFMTEALLARQMIDDPELSDVELVILD 125 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERS+ DLAL LL ++Q+ L D+K+L+MSATL+ +++ L + P+V G+ F + Sbjct: 126 EFHERSMHVDLALGLLRELQE-LGRDIKILVMSATLEAEKIASYLGDCPIVSVPGKLFEL 184 Query: 184 ERRYLP----LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS- 238 + RY L +F DAVA + Q +L+FLPGVGEI R ++ L S S Sbjct: 185 DVRYQKGSQQLQTFPQFFDAVAQTVKDAQLQTRHDILVFLPGVGEIDRAKDALQSWADSK 244 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 ++ L PL+G+L+L DQR+A+ Q ++V+L+TNIAE+S+TI+G+ V+D + + Sbjct: 245 NIELVPLHGSLNLEDQRRALKKTSQ--QRVILSTNIAESSVTIDGVNTVIDSGLAKNMKQ 302 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEILQSDL 357 D RTG +RL R+S +S QR+GRA R PG++ + K E + +SE EI + DL Sbjct: 303 DHRTGFSRLELGRISLSSAIQRSGRAARQFPGVAYRMWNK-MDELSFGKSEVAEIQRVDL 361 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGN 416 + L+ L G +D SW ++P V + A R L++ GA+ + +++A G+K+ Sbjct: 362 TESLLFLSAQGVTDFDSFSWFEKPQKVAIENALRYLRISGAVDDNNKITALGRKILHFPL 421 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEE---------PPRMGNS---DLGV------AF 458 RLA +++ + A+++AA+L+E +G++ DL F Sbjct: 422 PVRLAKLMLVGMDLGAIELASEMAALLQERDILRRESVASFLGDNLECDLSARLEVLHQF 481 Query: 459 SRNQPA--------------WQQRSQQLLKRLNVRGGEADS--------SLIAPLLAGAF 496 +N+ A ++ Q+L KRL + +L +L A+ Sbjct: 482 RQNKKAPAGSAYFSLQTVDQAARQIQELAKRLQKSSDTPTAALKKDQQLALTKKILLTAY 541 Query: 497 ADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDI 556 ADR+ RRRG+ R + G G L + E+ A ++GS+ + + LA + Sbjct: 542 ADRLCRRRGKTERALMVGGRGVKLQNETLVKNSEFFAALNGVEGSSDAETMVSLACGAEK 601 Query: 557 DELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGI 616 D ++ + ++ V + + +G + L ++ L+ S E+ + + + Sbjct: 602 DFVLDHFRNDIVKTRDVSFVEEKGQFFTREYRSLYGLPLEEPSLSPASATEVSEKLPQIL 661 Query: 617 RDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLR 676 DK VL RL ++L + + +D E L +E + M G ++ Sbjct: 662 ADKFDLVLKTNEALSHWWERL----QFLQQQEELNLDIEKL--KVEAFTQACM-GESKMQ 714 Query: 677 GLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFG 736 + D+ +L L E+P VP+GS+I + Y D PP L VR+QE+FG Sbjct: 715 AVMEKDLCFFFESVLPPETANTLRREIPDRIEVPSGSKIRVIYPSDKPPYLEVRIQEVFG 774 Query: 737 EATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 P + + +P+ L LL P RP+Q+T +L FWK Y EV+KE++ +YPKH WP+DP Sbjct: 775 LMQTPKVYKQTIPITLHLLGPNFRPVQVTSNLESFWKNGYPEVRKELRIKYPKHQWPEDP 834 Query: 797 ANTAPTRRTKK 807 A+ P + ++ Sbjct: 835 ADGIPEAKGRR 845 >UniRef50_A6DMD8 ATP-dependent helicase HrpB n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMD8_9BACT Length = 805 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 248/816 (30%), Positives = 404/816 (49%), Gaps = 58/816 (7%) Query: 23 VLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGY 82 +LLSAPTG+GKST +P LL + GKII+L+PRR AA+ +A A L +EK GD +GY Sbjct: 1 MLLSAPTGSGKSTCVPGILLDSGKMPGKIIVLQPRRAAAKFLAHHTARLRSEKLGDEIGY 60 Query: 83 RMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDV 142 +R + VG +T++ +T+G+ + ++ +P+L+G+ V+ DEFHER Q DLA A+ + Sbjct: 61 NIRHDSKVGAHTQIIFMTDGLFLQQLKNNPQLNGIAAVLFDEFHERRWQMDLAFAMCQKI 120 Query: 143 QQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAV 202 Q +D L L++MSATLD D+LQ+ L P++ ++ R FPV+ YL ++ + A Sbjct: 121 -QSRQDKLHLMLMSATLDVDKLQKKL-NCPLITTDVRHFPVDINYLIPDRQKKIWEVAAK 178 Query: 203 ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAP 262 + ++ Q GSLL+F+PG EI + +L + + + L+G L+ +Q + I Sbjct: 179 SAKNLIAQTDGSLLIFMPGKYEITKTVNELKKVLKTPIF--ALHGQLNPQEQDRII--EN 234 Query: 263 QGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAG 322 G +K++++TNIAETSLTI I V+D R + +DP+ + L T+ VSQ+S QR+G Sbjct: 235 TGQQKIIVSTNIAETSLTIPNITAVIDSGLVRQSAYDPQRQINTLYTKSVSQSSAEQRSG 294 Query: 323 RAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPP 382 RAGR G L L +K + R EPEIL+ D S LL++ L G +D + + +D P Sbjct: 295 RAGRTSAGRCLRLWSKSEQSRKPEHFEPEILRCDPSELLLQCLAQGFNDLSDLELIDAPD 354 Query: 383 VVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAA 441 ++ A LL LG R LS G + + PRLAA+L D+ A AA Sbjct: 355 --DIEQAWGLLSNLGFTNAHRGLSTAGVHASKMPCSPRLAALLYYGTQADQMDKACTYAA 412 Query: 442 ILEEPPRMGNSDLG----------VAFSRN--------------QPAWQQRSQQLLKRLN 477 ++ E P + N + V FS + + A Q+ + L N Sbjct: 413 LISEAPIILNRNKKKLLDLIPGKHVDFSSDLDLMAELLYSAKSLKFAPQECDKYGLNANN 472 Query: 478 VRGGE----------------ADSSLIAP--LLAGAFADRIARRRGQDG-RYQLANGMGA 518 R + D + + P L AF D +A+RR + LAN Sbjct: 473 CRSVDLARMQFLRLCEKLPRLNDFNDMHPHCCLLRAFPDHLAKRRDTSSLQVTLANKQKG 532 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDID-ELVQRC-PQLVQQSDTVEWD 576 +D + + + ++A + ++S A+ L+ L I EL+ P +Q + + WD Sbjct: 533 EIDRLSSQKKADLILATSIADIASSLGAKTKLSQLTSISPELLDHTFPGELQSQERMVWD 592 Query: 577 DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLR 636 + +++ ++ L ++ + + + Q + I D + + W + E R Sbjct: 593 PSSKSVRQAKQHAFRSLIIEEKISICEANAQTEQVLAEKIIDGTIKLNKWNEKVELWITR 652 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 + A+ P+ D D+ LE + +G+ ++ +D L+ LL W Q Sbjct: 653 VRKCAELYPDKDLITYSDQD----LEIVYMEMCSGITKASEVRDMDCLVYLKNLLSWDEQ 708 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 +D P +P G ++ I Y +Q++F P I R+PL E+L+ Sbjct: 709 CFIDEATPESIQLPEGKKLRIIYESGKEIYARAFIQQLFDLKETPLIGPARIPLTFEILA 768 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 P RP+Q+T++L +FW G Y E++ + RY KH W Sbjct: 769 PNHRPIQVTKNLENFWSGLYPEIKPALSRRYHKHKW 804 >UniRef50_C0WHI1 ATP-dependent helicase n=4 Tax=Corynebacterium RepID=C0WHI1_9CORY Length = 756 Score = 351 bits (901), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 277/813 (34%), Positives = 421/813 (51%), Gaps = 74/813 (9%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LPVA E + +L V++ AP G GK+T +P L H GK+I+ PRR+A Sbjct: 9 AGLPVA----ETIDSLPHTGNVVIQAPPGTGKTTLVPPALANHSAGRGKVIVTAPRRVAV 64 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R AQRL+ L D VG+ +R ++ G + +E VT GVL R + +DPEL GV V Sbjct: 65 RAAAQRLSTLSGTP--DKVGFAIRGESRAG--SEVEFVTPGVLLRRLLKDPELEGVAAVA 120 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER L DL L + L++ + LR+D +++ MSAT+D R Q++ APV +E ++ Sbjct: 121 IDEVHERQLDTDLVLGMCLELTE-LREDFRVIAMSATVDAQRFSQLM-GAPVHTTEAVTY 178 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVL 241 P++ +Y P P + A+ ++ S L+F+PGV E+ V E+L G +V Sbjct: 179 PLDIQYAPQPGRAAGSREFYGSIAKQAARQHESTLVFVPGVREVNLVCEELR---GHNVF 235 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 PL+G + +Q A+ Q ++V+AT+IAE+SLT+ G+R+VVD RV R D + Sbjct: 236 --PLHGKQTTAEQDAALYTDEQ---RIVVATSIAESSLTVPGVRVVVDAGLARVPRRDAQ 290 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 G++ L+T S++S QRAGRAGR PG + +++ + + + PEIL +DL+ Sbjct: 291 RGMSGLVTVSTSRSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHTTPEILSADLTQAA 350 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLA 421 + L WG + L AA+ L+ +GA Q++A L DPR Sbjct: 351 LFLDCWGAGPDFPLLDPPP--AQALAAARATLERIGAT---------QELALLPTDPRQG 399 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 A L+ ++ +A A IAA+ + P +DL +PA Q+ ++ L RL G Sbjct: 400 AALI--RHGSQA--APTIAALADAP--TNTTDL-----TRRPAPQKEIRR-LSRLVEDLG 447 Query: 482 EADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWL-IAPLLLQG 540 AD + +A A+ +++A+R G+D Y LA+G A L N L+ WL IA + L Sbjct: 448 PADPGEV---VATAYPEQVAKRVGED--YLLASGTRARLLDNSGLAGSPWLAIAEVTLSN 502 Query: 541 SASP----DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVK 596 + +P ARI + +D + + ++ G ++ + G + + Sbjct: 503 AGNPIIRTAARIEESAALDAIGVTEETRAFLR----------GGRVRGVKVRAAGAIVLS 552 Query: 597 VQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQL--RLRLLCAAKWLPEYDWPAVDD 654 P+ K + D QA+ GIR++GL + ++ +A+ L RLR L A P WP VD Sbjct: 553 ETPV-KVTGDAAAQALAAGIREEGLGLFTFSEKAQSLKDRLRHLHAHYGDP---WPEVD- 607 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSR 714 A WL P + + + +D+Y AL+ LL W RLD P VP+G Sbjct: 608 ---AADPAEWLGPELHQIAAGTPTAKIDMYPALQRLLPWPGATRLDELAPQRLPVPSGRD 664 Query: 715 IAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKG 774 I + + P + +++QE FG A +P RV LLSPA RPL +T DL+ FW G Sbjct: 665 AKIDWSGER-PVVHIKLQECFGLAESPEYCGNRV--QFHLLSPAGRPLAVTDDLASFWSG 721 Query: 775 AYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 Y V+ EM+GRYPKH WP+DP N T RTK Sbjct: 722 PYAGVRAEMRGRYPKHPWPEDPWNAIATARTKN 754 >UniRef50_Q01ZA3 ATP-dependent helicase HrpB n=2 Tax=Acidobacteria RepID=Q01ZA3_SOLUE Length = 816 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 290/816 (35%), Positives = 431/816 (52%), Gaps = 51/816 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ ++P++L L A ++L AP GAGK+T +P LL + ++++LEPRRLAAR Sbjct: 27 LPIDELIPDILQHLRSANTLVLEAPPGAGKTTRVPPALLELD--DREVLVLEPRRLAARL 84 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+ +A E+ G+TVGY++R + G TRL +TEGVLTR + DP L V V+LD Sbjct: 85 AARYVAGERQERVGETVGYQVRFEEVAGARTRLRFLTEGVLTRRLLSDPALDRVACVVLD 144 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHER L+ DLALALL +Q+ R DLKL++MSATLD + L +A ++ S GR + Sbjct: 145 EFHERHLEGDLALALLRRLQRTRRPDLKLVVMSATLDTAPIAGYLDDARILRSSGRQHAL 204 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRI-GSDVL 241 E Y P A D+ VA A + G L+FLPG EI+R Q A+ + Sbjct: 205 EIEYTPHSAAP-LDEQVAAALERLAASGFPGHALVFLPGAFEIRRAQTACAAMARRRNWR 263 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 L PLYG S +Q +A+ AP K++L+TN+AE+S+TI+G+ V+D RVA P Sbjct: 264 LLPLYGDQSPEEQDRAV--APSAETKIILSTNVAESSITIDGVSAVIDSGLARVASHSPW 321 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 +GL L R+SQAS QRAGRAGR PG ++ L + R AQ P+IL+ DL+ Sbjct: 322 SGLPTLQVARISQASANQRAGRAGRTGPGRAIRLYPLDDFARRPAQDVPQILREDLAPTA 381 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLA 421 + LLQ +D + WLD PP + A+ LL+MLGA G ++MA PRLA Sbjct: 382 L-LLQAMETDLGSLDWLDAPPAAAIEHARELLRMLGASGG-----TAREMARYPLHPRLA 435 Query: 422 AMLVSAKNDDEAATAAKIAAIL-------EEPPRMGNSDLGVAFSRNQPAWQQRSQQLLK 474 ++V A+ A IA +L + P SDL V + W + +L++ Sbjct: 436 RLIVEARRRGVPQEGAAIAGLLSAGERLPQRVPHGSRSDLLVLL---ESEWSPYAARLVR 492 Query: 475 RLN---VRGG----EADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALS 527 +LN RGG E + +L+ +L AF DR+ARRR Q QLA+G A L N L+ Sbjct: 493 QLNGGAARGGLRNVEREDALLISVLT-AFPDRVARRR-QGSDLQLASGSSAQLAPNSTLT 550 Query: 528 RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRR 587 + ++A + LA ++ + LV P +++++T+EW + ++A Sbjct: 551 -ADLMVAVEAEDRKDQGSPLVRLASAIEPEWLVDLFPDRLRETNTLEWQRSGERVEAVTS 609 Query: 588 LQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 L Q+ ++ + P + + + + GL E + R+ AA+ Sbjct: 610 LLFDQIPLETR-RTTPDPEAAGVFLAHKAVEAGLGRFADMEEIAAFQSRVNFAAQ---HG 665 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW------GMQQRLDS 701 +DD ++ AAL L+ L+ GLL G +RL Sbjct: 666 AVARLDDAAIEAAL-------AQLAAGLKSFSELEAAAGRGGLLRAIEQAMPGPSRRLLE 718 Query: 702 EL-PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQR 760 EL P+ +P G ++ + Y PP +A R+Q+ FG P + +G+ PLV+ LL+P QR Sbjct: 719 ELAPSSIKLPRGRQVRVHYEAGQPPWIASRLQDFFGMRETPAVGRGKSPLVIRLLAPNQR 778 Query: 761 PLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 P+Q+T DL+ FW+ Y +V++E+ RYPKH WP+DP Sbjct: 779 PVQMTSDLAGFWERLYPQVRRELARRYPKHSWPEDP 814 >UniRef50_C0W153 ATP-dependent helicase HrpB n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W153_9ACTO Length = 824 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 269/831 (32%), Positives = 418/831 (50%), Gaps = 63/831 (7%) Query: 17 LDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLAARNVAQRLAELLNEK 75 L+ + Q++L+A GAGK+T +PL LL P G+II+ +PRR+A R+ A +A LL E Sbjct: 11 LEDSNQLVLTASPGAGKTTMVPLMLLESLPAEAGRIIVAQPRRVAVRSAASYVASLLGEP 70 Query: 76 PGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLA 135 G+TVG+RMRA V +TR+E T G L R + DP+L GV VI+DE HER L ADL+ Sbjct: 71 VGETVGWRMRADTRVSASTRIEFTTTGTLLRRLLADPDLVGVSAVIIDEVHERHLDADLS 130 Query: 136 LALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQR 195 LA LD LRDDL+L+ MSAT D R Q++L + P++ E +P+E +++P Sbjct: 131 LAFALD-SALLRDDLRLIAMSATADAARFQKLLGDCPLISVETPPYPLETKWVPFREAGL 189 Query: 196 FDDAVAVATAEMLR-------QESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGA 248 ++ A E L GS L F+ + R+ L R V PL+G Sbjct: 190 TAGGLSAAFLEYLASVIERAFNAHGSALAFVDSIANTTRLVTMLTER---GVPAFPLHGQ 246 Query: 249 LSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLI 308 LS +Q A+ + G +V++AT IAETSLT+ G+ VVD RV RF+ +G T L+ Sbjct: 247 LSAAEQDTAL--SFTGDARVIVATEIAETSLTVPGVNCVVDAGVSRVPRFEVASGTTHLV 304 Query: 309 TQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWG 368 T SQ++M QRAGRA R PG+ ++ RA + PEIL +DL+ + W Sbjct: 305 TVGASQSAMQQRAGRANRTGPGVVYRAFSESDYARALRYAVPEILAADLTEATLLAYAWS 364 Query: 369 CSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE----RLSAQGQKMAALGNDPRLAAML 424 C PA + LD PV L A+ L+ +GALE ++SA G+ ++++ P++A L Sbjct: 365 C--PADLQLLDAFPVAALARAEATLRGIGALETAADRLQISASGRILSSIPTVPQVAHGL 422 Query: 425 VSAKN-DDEAATAAKIAAIL------------EEPPRMGNSDLGVAFSRNQPAWQQRSQQ 471 +SA + AA++AA+L + R + L F W Q Sbjct: 423 LSACVWGVPSEVAARVAAVLSGSQIFPRAVSVDSAMRSADPQLVKRFKALVTQWGSDYTQ 482 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRG-------QDGRYQLANGMGAMLDAND 524 +++ R EAD + ++ A+ RI R + R+ G G ++A Sbjct: 483 VIEAPKRRLSEADWPGL--VVGAAYPQRICRVNPGTVVSTLKPVRFTSVGGTGFEVEAES 540 Query: 525 ALSRHEWLIAPLLLQGSASPDARILLALLVDIDE--LVQRCPQLVQQSDTVEWDDAQGTL 582 L+ +WL A +QG + + L L +I E + Q S +V+ ++ G + Sbjct: 541 ELASAQWLAAA-SVQGV---NGVVKLRLGAEISEPTALFLADAYRQVSRSVQVNN--GVI 594 Query: 583 KAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRD----KGLSVLNWTAEAEQLRLRLL 638 KA + +G L + +P++ ++ E++ + ++ +S+ T A L+L Sbjct: 595 KAIETVSLGALPLHQKPVSA-TDTEVYDCLAEALQHCEPAGWISIFKPTKPA----LQLA 649 Query: 639 CAAKWLPEYD--WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 +L D +P ++ + LE +L +T + R +D LR L W Sbjct: 650 DTCNYLHSLDDAYPQINSAWISENLEIFLGTSITELSVGRPCAEVDALTGLRLSLGWETA 709 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 +++ +P VP+G + + D P ++V++QE FG PTI ++ +ELLS Sbjct: 710 MQIEQLVPRVVKVPSGREVPVTIDPDRGPTISVKLQECFGWRNVPTILGKQIS--IELLS 767 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 PA RPL +T DL+ F+ Y V+ EM+GRYPKH WP+DP T +T + Sbjct: 768 PAGRPLAVTGDLTHFFNETYVTVRAEMRGRYPKHPWPEDPWQATATVKTNR 818 >UniRef50_B3PC35 Putative HrpA-like helicase n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PC35_CELJU Length = 814 Score = 341 bits (874), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 297/835 (35%), Positives = 446/835 (53%), Gaps = 68/835 (8%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LP++A+ ++AL P +LL A GAGKST PL LA ++IL++PR LA Sbjct: 9 LPDLPLSALRDGFMSALQQTP-LLLEAEPGAGKSTLAPLWALAQVAEGRQVILVQPRILA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A+ +A RLA+LL E G+ VGY++ + V T+L V T GVL + + +PEL VG V Sbjct: 68 AQALAVRLAQLLGEACGERVGYQVPYDSRVSSRTQLLVATPGVLLQRLLANPELGDVGCV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HERS+ DL ALL +V Q LRDD++L++MSAT D QQ+ + + GR Sbjct: 128 MLDEIHERSVNQDLLWALLQEV-QILRDDVQLVVMSATPDPALQQQIHHR---LFAPGRC 183 Query: 181 FPVERRYLPLPA--------HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 FPV Y P A ++ + A A ++ +L+FLPG EI L Sbjct: 184 FPVSVHYQPPKALGSGQFSQEEKLPAQLLRALANHGDWQTRCVLVFLPGWREIDDCAMAL 243 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 S V L L+ ++ +QR A+ PA QG R V+LATNIAETSLTI + LV+D Sbjct: 244 HDAYPS-VQLFRLHSQVAAQEQRNALDPA-QGPR-VILATNIAETSLTIADVTLVIDSGL 300 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R ++ RTGL+RL T R+S AS QR GRAGR++ G + L +++Q AA PEI Sbjct: 301 ARRVDYEQRTGLSRLRTARISMASAEQRRGRAGRVQAGQCIRLWSQDQP--LAAADLPEI 358 Query: 353 LQSDLSGLLMELLQWGCSDPAQ-MSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQK 410 +D L + + WG PAQ + WL+ P + L A++ LQ++G L+ + ++ G+ Sbjct: 359 RATDYLPLALRIAHWG--SPAQSLPWLEPPNRLALQFAQQQLQLMGLLDVQGMITDAGRC 416 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDL-------GVAFSRNQP 463 ++ LG PR+AA+L++ + A+ + P DL G +RN+ Sbjct: 417 VSELGTHPRVAALLLNQQQQVARPLLLLALALHFDWP--AEQDLVSWLDSAGRERARNR- 473 Query: 464 AWQQRSQQLLKRLNVRGGEADSSLIAPL-LAGAFADRIARRRGQDGRYQLANGMGAMLDA 522 WQ + ++ L L + E + + L LA AF DRI R+ + GRY++ +G+ Sbjct: 474 QWQVQCKRWLNVLALVEVERELVAVDALALARAFNDRIGYRQ-ESGRYRVNSGISVQASC 532 Query: 523 NDALSRHEWLIAPLLLQGSASPDAR----ILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 + +W + PL+ SP A+ I L L+++ ++ QR Q Q +E+ Sbjct: 533 DS-----DWAVFPLI-----SPKAKGHSGIGLPLVLNREQ--QR--QFSQCDTRLEFKQQ 578 Query: 579 QGTL-KAWRRLQIGQLTVKVQPLAKPSED---ELHQAMLNGIRDKGLSVLNWTAEAEQL- 633 + + AWR +G + + Q P+ D L Q + I+ KG L W A A++L Sbjct: 579 RWQMGTAWR---MGGVLIDEQWQPLPASDIPRALLQQVREHIQQKGWDSLRWPANAQRLL 635 Query: 634 -RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 R RL+ ++ L PA+D+E L+A L+ WLLP +T L L AL L Sbjct: 636 QRARLVASSGLLVL---PALDEEYLIANLDDWLLPFLTAQTQ---LDQLPWQAALEFYLG 689 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 + Q + + LP +P+G R+ + + + P +A ++QE FG +AQGR+PL + Sbjct: 690 YDNVQNIAALLPEAIELPSGRRVTVEFSSEGQPQVAAKLQEFFG-CEQLQLAQGRIPLKI 748 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LLSP PL +T +L FW+ AY +V+KEM+GRYP+H WP++P T TKK Sbjct: 749 HLLSPNGSPLAVTANLQTFWQQAYPDVRKEMRGRYPRHPWPENPLEHQATALTKK 803 >UniRef50_C6MXH7 Helicase n=2 Tax=Legionella RepID=C6MXH7_9GAMM Length = 866 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 266/857 (31%), Positives = 420/857 (49%), Gaps = 77/857 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LP+ + ++L + ++++A GAGK+T LP +LL+ + GKI++LEPRR+A+ Sbjct: 16 THLPIDDFIDDILQKVTSHTNLVITAAPGAGKTTRLPPELLS--VVAGKILVLEPRRMAS 73 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 A R+AE N G+ VGY++R N TRL +TE +L R + PEL V +VI Sbjct: 74 IAAAHRVAEENNWLVGEEVGYQVRFVNKTSHKTRLIYMTEALLARHMIHHPELDDVDIVI 133 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDEFHERSL DL L L+ ++Q+ L +K+++MSATL+ +++ + L PV+ G+ F Sbjct: 134 LDEFHERSLYVDLTLGLIRELQE-LGHHIKIVVMSATLEAEKIAEYLGNCPVISVPGKLF 192 Query: 182 PVERRY-----LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS-R 235 + RY L P +Q F + ++ E RQ +L+FLPG EI+R + L + Sbjct: 193 ELTVRYQKSTQLLTPQYQ-FYEHLSQVIKEAQRQTDKDILVFLPGAREIERAKGNLLDWK 251 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + L+G+L L QR A+ ++++LATNIAE+S+T++G+ V+D ++ Sbjct: 252 ESKKIEVITLHGSLPLEAQRIAL--QKSSAQRIILATNIAESSVTLDGVDTVIDSGLVKI 309 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 + D RTG +RL R+S AS QRAGRA R PG+ + + + PEIL+S Sbjct: 310 MKQDLRTGFSRLEISRISLASAIQRAGRAARQFPGVCYRMWNQHDESSFVKSNIPEILRS 369 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAAL 414 DLS L+ L S+ SW ++PP VN+ A LQ GA++ L++ G+++ Sbjct: 370 DLSDSLLFLANQHISNFQNFSWFERPPCVNIERATFSLQAAGAIKNNNELTSIGRQLLDF 429 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEE---------------------PPRM---- 449 RL +L++ ++ AAKIAA+L+E PR+ Sbjct: 430 PLPLRLGRLLIAGIENNCIDLAAKIAALLQERDILRKEMANHFQADHFECDVAPRLKILN 489 Query: 450 -----GNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAP-----LLAGAFADR 499 G+S G F+ Q Q Q L ++ E + L LL +F DR Sbjct: 490 KFLKDGSSHEG-HFTILQTVAQSYQQILDLAKKLKKAEPPAYLEEDEARQLLLMLSFGDR 548 Query: 500 IARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDEL 559 + RRR R + G G L + R E+ IA + S + I A ++ + L Sbjct: 549 LCRRRKNSDRALMVGGRGVKLSDRTLVKRSEFFIALNGFEESGEAETLINQASGINKEFL 608 Query: 560 VQRCP-QLVQQSDTV-EWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIR 617 + ++++ D + E + +Q + ++ L L ++ + + + + + + + Sbjct: 609 FKHFSDNIIKKRDIIFEAEKSQFYQREFKTL--WDLPIEEPNFSLATSVHVAEKLPDILT 666 Query: 618 DKGLSVLN-------WTAEAEQLRLRLLCAAKWLPE-----YDWPAVDDESLLAALETWL 665 D S L W + LR + + +D A+ L Sbjct: 667 DNWASTLKKNENLHEWYQKIIFLRFHKALIPPHIQDELESLFDGDALKKSFCLTVFRQAC 726 Query: 666 L--PHMTGV--HSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHE 721 MT V +L L+I + LR + L +ELP VP+GS I I Y Sbjct: 727 FGESKMTFVLKKNLVYFFELNISETLRSI--------LQTELPNRLKVPSGSMIPIHYST 778 Query: 722 DNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQK 781 P L VR+QE+FG P I V +VL LL P RP+Q+TRDL FW+ Y E++K Sbjct: 779 VEHPFLRVRIQEVFGWEETPKILFQSVSVVLHLLGPNFRPVQVTRDLESFWQNGYSEIRK 838 Query: 782 EMKGRYPKHVWPDDPAN 798 E++ RYPKH WP +PA+ Sbjct: 839 ELRIRYPKHQWPLNPAD 855 >UniRef50_A6GDN5 ATP-dependent helicase HrpB n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDN5_9DELT Length = 879 Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 295/871 (33%), Positives = 429/871 (49%), Gaps = 81/871 (9%) Query: 2 SSLPVAAVLPELLTALDCA---PQVLLSAPTGAGKSTWLP---LQLLAHPGINGKIILLE 55 S LP+ A+LP L L+ +++ AP GAGK+T +P L L G II+L+ Sbjct: 7 SELPIEAILPALRERLESGGPRTNLVIEAPPGAGKTTRVPVAVLDCLDRAQDGGTIIVLQ 66 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRRLAAR AQR+A ++ E G+ VGYR+R V TR+ +TEGVL R ++ +PEL Sbjct: 67 PRRLAARLSAQRVASMVGEVVGERVGYRVRFDRAVSARTRVLFMTEGVLLRRLRSEPELP 126 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPV 173 GV VILDEFHER L DL LALL +Q D L +L+MSATLD + + L A Sbjct: 127 GVAAVILDEFHERHLDGDLLLALLTRLQGRCPADRRLHVLVMSATLDAEPIAAHL-GAER 185 Query: 174 VISEGRSFPVERRYLPLPAHQR-------FDDAVAVATAEMLRQ--------ESGSLLLF 218 + SEGRSFPVE Y A + + VA A E++ E G +L+F Sbjct: 186 LRSEGRSFPVEVAYRAPKARAKSSRGELPLERQVAAAVRELVEDGRVGARSPEGGHVLVF 245 Query: 219 LPGVGEIQRVQEQLASRIGSDVL-LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAET 277 LPG EI+ E A S L L L+G LS Q +A+ K++L+TN+AET Sbjct: 246 LPGAREIRASAEACAKLAASAGLELMTLHGQLSREAQDRAVSRGDLRRGKLILSTNVAET 305 Query: 278 SLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA 337 S+TI+G+ VVD RVA FDP TGL RL +S+AS QRAGRAGR PG+ L L + Sbjct: 306 SITIDGVVAVVDSGLARVADFDPSTGLPRLSLAPISRASAAQRAGRAGRTRPGLCLRLYS 365 Query: 338 KEQAERAAAQSEPEILQSDLSGLLMELLQWGCSD--PAQMSWLDQPPVVNLLAAKRLLQM 395 + ++ A PE+ + +L+GL +EL G + A + WL+ PP ++ A+ LL Sbjct: 366 RANHDQRRAHDLPELQRLELAGLCLELAAAGIREVTDASLPWLEAPPEASVAVARELLLH 425 Query: 396 LGALE-GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP------- 447 LGA++ L+ G+ M A PRLA +LV+ A+ AA+L E P Sbjct: 426 LGAIDDAGALTDTGRAMLAYPVHPRLARLLVAGVELGVGQAVARAAAVLSERPLRPPGSR 485 Query: 448 --RMGNSDLGVAFS------RNQP-----------AWQQRSQQLLKRLNVRGGEADSSL- 487 R+ ++D+ A + R++ A +R L +L RG + L Sbjct: 486 ATRIDDADVFEAMAWLGRGGRDEGRAPRSVDPGALASVRRVAAQLSKLARRGADKQPRLA 545 Query: 488 -------IAPLLAGAFADRIAR---RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLL 537 + L A DR+AR R A G A L A + R +W++A Sbjct: 546 KAEIEARVREALLLAHPDRVARVDVDEHDQRRLVFAFGGSAQL-AESSGVRAQWVVA--- 601 Query: 538 LQGSASPD-----ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQ 592 L+ + AR+ +A +D D L++ ++ + V +D + + L+ G+ Sbjct: 602 LRSEERREGLRRQARVSMASAIDPDWLLEHYADTIEDLERVAFDPKRERVFGESALRYGK 661 Query: 593 LTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAV 652 LT++ + + + A+L R G S +QLR R++ W + Sbjct: 662 LTIESSAMPRLDPERASAALLEAARQAGASAFCDAEALDQLRRRVVFVVSQ--RGLWAGL 719 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW--GMQQRLDSELPAHYTVP 710 D E+L+ + L TG S L+ + + LD G + L P+H +P Sbjct: 720 DFETLV---DRSLERACTGRTSFAELREAGLLTTIELELDALAGTPRSLARLAPSHVRLP 776 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 G R+ I Y D PP + R+Q+ FG A P I G VPLVL L +P + + +T DL+ Sbjct: 777 GGRRLRITYETDRPPWVGSRLQDFFGMADGPRILDGAVPLVLHLRAPNKHAVAVTTDLAG 836 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAP 801 FW+ Y E ++ + RYP+H WP+DP P Sbjct: 837 FWREHYPEQRRRLSRRYPRHDWPEDPLTAKP 867 >UniRef50_UPI0001746914 ATP-dependent helicase HrpB n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746914 Length = 859 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 258/862 (29%), Positives = 420/862 (48%), Gaps = 80/862 (9%) Query: 2 SSLPVAAVLPELLTALDCAPQ---VLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPR 57 S LP+ A+ L+ + + ++ APTG+GKST +P LL H + +I++L+PR Sbjct: 6 SHLPIEAIRNPLVGWFNRTSKRANAVVKAPTGSGKSTQVPQMLLDHDLAGDKRIVVLQPR 65 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AAR +A R+A + G+ VGY++R +N TR+ VTEGV+ R + DP L V Sbjct: 66 RIAARMLAARVASERGVRLGEEVGYQVRFENVSSARTRILFVTEGVMLRHLLDDPTLGKV 125 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 G +++DEFHER L DL LA +Q R DL++++MSAT+ + L++ + + SE Sbjct: 126 GCLVIDEFHERHLDGDLCLAWARAIQAVHRPDLRIIVMSATITPEPLREFMNPCEIFDSE 185 Query: 178 GRSFPVERRY-LPLPAHQRFDDAV---AVATAEMLRQESG---SLLLFLPGVGEIQRVQE 230 GR+FPV Y P + F++A+ A AE L G +L+F+PG EI++ Sbjct: 186 GRTFPVSISYQAPQRDKRGFEEAIWDQAARAAEDLVTTRGVQDDILIFMPGGHEIRKTIS 245 Query: 231 QLASR-IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 L R + PL+G L Q + + P QG R+++++TN+AETSLTIEG+R V+D Sbjct: 246 ALQGRSFARGYRILPLHGELPPQQQDEVLQPG-QG-RRIIVSTNVAETSLTIEGVRAVID 303 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++ +D R G+ L Q++S+AS QR+GRAGRL PG+ + L + + A Sbjct: 304 SGLARISSYDARRGINTLTVQKISRASAEQRSGRAGRLGPGMGVRLWPEREHLHRAENEL 363 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE--RLSAQ 407 PEI + DLS + L + W + P + A LL LGA++G+ L+ Sbjct: 364 PEIRRLDLSEAFLTLKVVTKAAGMTFDWYESPTEESAHRATGLLAALGAIQGQDGSLTEL 423 Query: 408 GQKMAALGNDPRLAAM-LVSAKND--DEAATAAKIAA---ILEEPPRMGNSDLGVAFSRN 461 G++M+A PR + M + +A+ + ++AA A +A +L +P + F R+ Sbjct: 424 GRQMSAFPLHPRFSRMLITAAEFNCLEDAALCAALAQGRDLLMKPTELTKRKQEDFFQRD 483 Query: 462 QPAWQQ---------------------------------RSQQLLKRLNVRGGEADSSL- 487 + Q R+ + + L R G A+ + Sbjct: 484 DLSEFQALMRAFDKAASTKFDPTACAPYGIHARAAHDAMRTYEQIGGLCRRMGLANRAQM 543 Query: 488 ------------IAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSRHEWLIA 534 +A + AF+D + R Y LA G L+ + + L+A Sbjct: 544 NNEDVPPPRAEDLARAILSAFSDHLGVETASGSRVYALAAGYKGHLEKDAHIKPPPLLVA 603 Query: 535 PLL--LQGSASPDARILLALLVDIDE--LVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 + +QG A ++ L L+ I+E L + P V V +D + + + Sbjct: 604 AEIAEIQGKA---LQVKLNLVTRIEETWLRELFPTDVTSGFHVAYDAINKRVMNLEQTRF 660 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 L + + +P+ + I K L + WT + EQ RL C A W+PE + P Sbjct: 661 RDLVLHSRERGEPNLGLAATLLAEEIVSKRLDLPTWTEKTEQWITRLNCLAIWMPELELP 720 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 + +E +E G + R +K AL L + L+ P + Sbjct: 721 TITEEDRRLLIEQICY----GATAYRQIKDRTPDSALHAWLSAAHRDMLEQYAPERVKLA 776 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 +G + Y ++ PP +AV +Q ++ NP IA G+V +++E+L+P+QRP+Q T DL Sbjct: 777 SGRTARVEYRDNAPPQMAVILQHLYDTLENPRIAGGKVSVLVEILAPSQRPVQTTGDLGS 836 Query: 771 FWKGAYREVQKEMKGRYPKHVW 792 FWK +Y+ V+ +++GRYP+H W Sbjct: 837 FWKTSYQAVKTQLRGRYPRHEW 858 >UniRef50_UPI000185C193 ATP-dependent helicase HrpB n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C193 Length = 805 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 266/829 (32%), Positives = 400/829 (48%), Gaps = 62/829 (7%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LP A+ L L A+ V++ AP G GK+T +P + + G+I++ PRR+A Sbjct: 14 AGLPFASQLASLADAVRDH-DVVVQAPPGTGKTTLVPPAVANT--LGGRIVVTAPRRVAV 70 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+ A+RLA+L K G+ VGY +R + TR+E VT GVL R + RD ++ V+ Sbjct: 71 RSAARRLAQLSGTKLGEEVGYSVRGDSRTSRATRVEFVTPGVLLRRLLRDGDVDASA-VL 129 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML---PEAPVVISEG 178 +DE HER L DL LA++ D++ +RDDL+L+ MSAT+D + +L AP+V +E Sbjct: 130 IDEIHERGLDTDLVLAMVRDLRD-IRDDLRLVAMSATVDAPKFAALLGGSTPAPIVAAEA 188 Query: 179 RSFPVERRYLPLPAHQRFD---------DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 FP++ RY P P QR D VA + + + +G +L+FLPG+ E++R Sbjct: 189 EIFPLDIRYAPFP--QRLDARGVTDDFLQHVAAQASTLTEEAAGDVLVFLPGIREVERCA 246 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +A S+V + L+G S +Q + G R+V+++T IAE+S+T+ G+R VVD Sbjct: 247 GYIAD--SSEVAVLTLHGQQSSEEQDRVFRRQADG-RRVIVSTAIAESSVTVPGVRAVVD 303 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R R D G + L+T +Q+S QRAGRAGR PGI + +++ + A Sbjct: 304 ACLARGPRLDIARGFSGLVTSSCAQSSANQRAGRAGREGPGIVVRCVSQSEFASFPAWPA 363 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQG 408 PEI +DL+ L++ WG + LD PP + AA +L LGA+ E ++ G Sbjct: 364 PEIEVADLTQALLDAAAWGTPGMQGLKLLDAPPPHHAEAANHILAGLGAVDEAGSITELG 423 Query: 409 QKMAALGNDPRLAAMLVSAKN--DDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ 466 + +A L PR+ L++A A+ L + + + PA Sbjct: 424 RTLATLPVHPRMGRALLTATAMMPQHTDAIARTVEKLTDARGLAKQVRRIELETETPA-- 481 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDA 525 LL S + A + A A+ D I RRR + Y G A L Sbjct: 482 ----NLLP----------SDIPALVTALAWPDFIGRRRSANSDEYLFTGGTAAELARGSD 527 Query: 526 LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW 585 L EW+ A + + S A I +D++ + L T + QG ++A Sbjct: 528 LRGQEWIAAADISRLSHG-RALIRTGEAIDLEIAMLAAGHLAHTETTARVE--QGRVRAR 584 Query: 586 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL--LCAAKW 643 R +G + + + ++ E + + N + EQLR R+ L + Sbjct: 585 ERDLLGAIELSSRQVSPTPEQCIAANSAWLADALADASPNLDRDTEQLRRRMAFLYTHRG 644 Query: 644 LPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSEL 703 P WP V L A E G +LD + LR LL W D + Sbjct: 645 SP---WPDVSPAGLAAQAELLF----AGELDRPTPPTLDA-EHLRRLLPWPEATDFDRLV 696 Query: 704 PAHYTVPTGSRIAIRYHEDNPP-----ALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 P VP+GS+I + Y ED LAV++QE FG A P + + P+ + LLSPA Sbjct: 697 PERLEVPSGSKIRLEYPEDPTDEEAQIVLAVKLQECFGLAETPQVLEK--PVTMHLLSPA 754 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 QRPL +T DL FW GAY +V+ EM+GRYPKH WP++P T RTK+ Sbjct: 755 QRPLAVTGDLESFWNGAYAQVRSEMRGRYPKHPWPENPWEEQATARTKR 803 >UniRef50_C1E5F1 Predicted protein n=13 Tax=cellular organisms RepID=C1E5F1_9CHLO Length = 1058 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 213/470 (45%), Positives = 285/470 (60%), Gaps = 25/470 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPL-QLLAHPGI---NGKIILLEP 56 + SLP+ VL L ALD + ++L AP GAGK+T LPL +L++P GK+I+LEP Sbjct: 63 VDSLPIREVLYRCLDALDESTGLVLQAPPGAGKTTALPLAMILSNPAWLPRTGKVIVLEP 122 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RRLAAR A R+A +LNE G TVGY +R ++ V P TR+EVVTEGVL R +QRDP L G Sbjct: 123 RRLAARAAATRMASILNEPVGKTVGYSVRFESKVSPATRVEVVTEGVLVRRLQRDPSLDG 182 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN--DRLQQML------ 168 V ++ DEFHERSL AD+ALAL + + LR DL+L++MSATL + R +ML Sbjct: 183 VFAIVFDEFHERSLDADVALALASETRSALRPDLRLVVMSATLGDVGPRASEMLSRGDGG 242 Query: 169 PEAPVVISEGRSFPVERRYLPLPAHQRFD--DAVAVATAEMLRQ----ESGSLLLFLPGV 222 P P+++SEG+SFPVE YL P D DA A L + G +L FLPG Sbjct: 243 PSCPLLVSEGKSFPVETVYLGPPGRNFGDLEDATVAAVRRALSDAPGVDGGDVLCFLPGA 302 Query: 223 GEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 EI RV L + + PLYGAL +Q+ A+ PAP G R+VV++T IAE+SLTI Sbjct: 303 AEINRVVAALRDGQSESLSVLPLYGALGQAEQQAALAPAPGGTRRVVVSTPIAESSLTIP 362 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 G+R+VVD R RFD G+TRL T +S AS QR GRAGR+ PG L ++ Sbjct: 363 GVRIVVDSGLARRPRFDSNKGMTRLDTALISVASADQRRGRAGRVAPGTCYRLWSERTHA 422 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDP---AQMSWLDQPPVVNLLAAKRLLQMLGAL 399 + A+ +EPEI +DL+ L ++L WG D + WLD PP L AA+ LL LGA Sbjct: 423 QLASDAEPEIANADLAPLALDLATWGIRDDEGVTSLPWLDPPPAGRLSAARDLLTRLGAT 482 Query: 400 E--GERLSAQGQKMAALGNDPRLAAMLV--SAKNDDEAATAAKIAAILEE 445 E R++ G++MA L PRLA M++ +++ + A +IAA+L + Sbjct: 483 EEGTGRVTPLGERMARLPLHPRLARMVLWGASRGPESCRMACQIAAVLSD 532 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/335 (37%), Positives = 176/335 (52%), Gaps = 19/335 (5%) Query: 491 LLAGAFADRIARRRGQDGRYQLANGMGAM-LDANDALSRHEWLIAPLLLQGSASPDAR-- 547 LLA A+ DR+ RR + G +QL+ G+GA + +D L+R E L + G AR Sbjct: 726 LLAVAYPDRVGVRRSKGGNFQLSGGVGAASVPGSDPLARAEVLAIAEMTSGDVGGGARND 785 Query: 548 --------ILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQP 599 L AL D D L ++ D+V W A + A R+L +G ++ P Sbjct: 786 RVRLAAPVPLTALEPDGDRPGCLADALCRRRDSVSWASASKAVVARRQLCVGDAVLRESP 845 Query: 600 LAKPSEDELHQAMLNGIRDKGL-SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLL 658 +P+ DE +AML G+++ G+ + L W+ + E R R++ P + D +L Sbjct: 846 F-QPTPDETVEAMLCGVKEMGVRAALGWSDKTESWRRRVMWLRTAGGADHLPDLSDAALE 904 Query: 659 AALETWLLPHMTGVHSLRGL-KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAI 717 A L+ WL P + GV S + K LD +R LL + +D P H VP+GSR+ + Sbjct: 905 ATLDDWLAPMLPGVTSKSAMHKQLDGDGLVRCLLTYEQTMEVDQSCPTHVVVPSGSRLPL 964 Query: 718 RYHEDNP---PALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKG 774 Y D P P L R+QE+FG A PTI RVP+ + LLSPA RP+Q+T DL+ FWK Sbjct: 965 DY--DTPGGTPVLRARLQELFGMAETPTIGPKRVPIEVHLLSPASRPVQVTTDLASFWKN 1022 Query: 775 AYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 Y +V KE+KGRYPKH WPDDP T R K S Sbjct: 1023 TYFDVAKELKGRYPKHYWPDDPTTAVATNRAKPRS 1057 >UniRef50_A4BBY9 ATP-dependent helicase HrpB n=1 Tax=Reinekea blandensis MED297 RepID=A4BBY9_9GAMM Length = 784 Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 261/824 (31%), Positives = 403/824 (48%), Gaps = 73/824 (8%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+AA+ +L A + ++SAP G+GK+T LPL L I LL P+RLA R Sbjct: 8 LPIAAIRNPVLNAWNEHGGAIISAPPGSGKTTQLPLWFLD--SGEAPIFLLIPKRLAVRM 65 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A++L++ L E G VGY++R +TRL V T G R++ DP+ VI D Sbjct: 66 AARQLSDQLAEPVGQRVGYQLRDDAKTSASTRLVVTTYGTFLRILLNDPDRISGSTVIFD 125 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERS+ DL+ AL+ L D ++ LIMSATL N R PV+ S+GRS+PV Sbjct: 126 EFHERSVDQDLSFALIHQYINELDDSVRRLIMSATL-NIRELATQTGLPVIESDGRSYPV 184 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 + Y P Q D +A + +L+FLPG+ EI+ ++ L D+ + Sbjct: 185 KLTYQPTNIKQPAD--IARVIRNEYQHVEHHILVFLPGIREIRAIERHL------DMPVL 236 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 L+G L+ +A+ AP V+LATN+AE+S+T+ + V+D ER A+ P TG Sbjct: 237 ILHGTLNATPDVQALSQAPA---TVILATNVAESSITLPSVHTVIDTGLERYAQVHPVTG 293 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 LT L T+R+SQAS TQR+GRAGRL PG + L +++ + P + +SDL+ ++ Sbjct: 294 LTELKTRRISQASATQRSGRAGRLGPGKGIRLWSEDDQQSLVPHLPPPVRESDLTESVLL 353 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAA 422 + WG + PA++ W + PP L A L GAL + ++ G+ M LG P LA Sbjct: 354 IAGWG-NRPAEIPWPETPPKQRLALAVEKLTTWGALSADGHITPHGRAMLRLGLPPWLAH 412 Query: 423 MLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW--------QQRSQQLLK 474 +L A+ ++ ++ A +G L A+ QP ++ + +L+ Sbjct: 413 LLALAQTEN------RLTAAALLAAHIGKG-LMPAYDFTQPQTLSDFSDDIRKETIRLIS 465 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQ-DGRYQLANGMGAMLDAN-------DAL 526 R + + LL A +DR+ R G+ DG+ + + ++ D + Sbjct: 466 RFQLEPNSTIEPISESLLVRALSDRVIRFHGKNDGQMISGTRVQTQVPSSSEWALLIDGI 525 Query: 527 SRHEWLI--APLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKA 584 R + ++ A + + G A +L L ++ D L Q + A Sbjct: 526 RREQHILGFAWVAVSGKA-----VLETLPIETDVLFQPTQK-----------------AA 563 Query: 585 WRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWL 644 + R + + +P +E QA + I G L+W+AE + R A L Sbjct: 564 FLRRRRLGRLNLDETPYQPEPEEKIQAWSHHIDAFGEEALSWSAEDRAFKRRCQVAEALL 623 Query: 645 PEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELP 704 DWP D S L +P + G L+ L L + L L + Q L+ LP Sbjct: 624 D--DWPKWPDGSEWTDLA---MPFLNG---LKRLDDLVLSPVLEHWLGYERLQWLNRTLP 675 Query: 705 AHYTVPTGSRIAIRYHEDNPPALA-VRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQ 763 H+T P+G + + Y + A A +++QE+FG A +PTIA G P+ L+L +P R + Sbjct: 676 RHWTAPSGRTVTLEYLPEKATARATLKLQELFGLAESPTIASG-TPIELDLCAPNGRSVA 734 Query: 764 ITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 DLS FW Y EV+KE++GRY KH WP+DP + T++T + Sbjct: 735 SVIDLSHFWANIYPEVRKELRGRYNKHPWPEDPLSFQATQKTNR 778 >UniRef50_C8NRG4 ATP-dependent helicase n=10 Tax=Corynebacterium RepID=C8NRG4_COREF Length = 811 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 275/829 (33%), Positives = 428/829 (51%), Gaps = 56/829 (6%) Query: 2 SSLPVAAVLPELLTALDC-APQVLLSAPTGAGKSTWLPLQLL-----------AHPGIN- 48 + LP +L +L L A +++ +P G GK+T +P + AH G Sbjct: 14 AGLPAQTLLDDLSGTLATGATNLVIQSPPGTGKTTVVPPAVANAVRNHPDLYPAHDGRGP 73 Query: 49 GKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMI 108 G +++ PRR+A R A+RLA+L + G+ VG+ +R ++ G + ++ +T GVL R + Sbjct: 74 GPVLVTAPRRVAVRAAARRLAQLDGSRVGERVGFTVRGEHHQG--SHVQFLTPGVLMRRL 131 Query: 109 QRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML 168 DPEL+GV VI+DE HER L DL + +L ++ Q LRDD L+ MSATLD +R ++L Sbjct: 132 LADPELAGVHAVIIDEVHERQLDTDLLVGMLTELSQ-LRDDFALIAMSATLDAERFAELL 190 Query: 169 PEAPVVISEGRSFPVERRYLPLPAHQ--------RFDDAVAVATAEMLRQESGSLLLFLP 220 A V+ ++ PVE Y P A + + D +A T++ + + S L+FLP Sbjct: 191 -GAQVLSAQAPVHPVEVHYQPGTAPRLTEKGVGWEYLDHLARLTSDAVARRQESALVFLP 249 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 GV EI+RV L +R+ +D+ + PL+G L+ +Q +A+ P ++V++T +AE+SLT Sbjct: 250 GVREIERVTATL-NRL-TDLEVLPLHGRLTPAEQDRAL--TPTNRPRIVVSTPVAESSLT 305 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + G+R+VVD R R D +T L+T +Q+S QRAGRAGR PG + A+E Sbjct: 306 VPGVRIVVDSGLSRSPRRDAARNMTGLVTVSCAQSSADQRAGRAGREGPGEVIRGYAQED 365 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + PEI +DL+ + L WG + + PP L AA+ LQ +GA++ Sbjct: 366 YAHFQPFTTPEIQSADLTQAALWLACWGTPRGEGLPLITAPPAPALEAAEATLQAIGAVD 425 Query: 401 GE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFS 459 G+ +++ G++++ L P L A LV+ AA + A+L + PR G+ + S Sbjct: 426 GDGAVTSLGRRLSTLPLAPHLGAALVA-----YGPQAAGVLAVLADDPR-GDVEKQARTS 479 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAM 519 R A+ R L+RL G ++ A IARR D Y LA+G A Sbjct: 480 RGNRAF-DREVARLRRLAPDTGTTRGVSAGQIIGTALPGLIARRE-TDTDYLLASGTRAT 537 Query: 520 LDANDALSRHEWL-IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 L + LS WL IA + GS R L+ I+E +++ +T Sbjct: 538 L-MDRELSGAPWLAIADITRSGS-----RALIRAAARIEEAAAL--EIIGVRETTRATVT 589 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 G ++A + G + + P ED +A+ I +GL + ++ +A L RL Sbjct: 590 GGKIQARQVRAAGAIELSSTPTRATPEDAA-RAVTAAIEREGLGLFTFSDKAAALAHRLR 648 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 + L E WP ++ A + WL P + + + R + +D++ AL+ LL W Sbjct: 649 FLHEHLGE-PWPDIE----AADVHLWLGPELEQIATGRPIDRIDLHPALQRLLPWPEASH 703 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 ++ P H TVP+G+R I Y E P + V++QE FG T+P + +P+ LLSPA Sbjct: 704 MEELAPTHLTVPSGNRHRIDYAEGR-PVVRVKLQECFGLDTSPELCG--LPVQFHLLSPA 760 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 RPL +T DL+ FW G Y +V+ EM+GRYP+H WP+DP T R KK Sbjct: 761 GRPLAVTDDLASFWSGPYAQVRAEMRGRYPRHPWPEDPWTAPATARVKK 809 >UniRef50_B2GHK7 ATP-dependent helicase n=7 Tax=Actinomycetales RepID=B2GHK7_KOCRD Length = 924 Score = 307 bits (787), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 267/817 (32%), Positives = 405/817 (49%), Gaps = 68/817 (8%) Query: 50 KIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQ 109 ++++++PRR+AAR A+RLA L +PG VG+ +R + TR+E VT G+L R + Sbjct: 111 RVVIVQPRRVAARAAARRLAALTGTEPGGVVGWSVRGERKTSKATRVEFVTPGILLRRLL 170 Query: 110 RDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML- 168 RDPEL+G V+LDE HER +++DL + +L +++Q LR+DL L+ MSAT++ +R +L Sbjct: 171 RDPELAGAAAVVLDEVHERGVESDLLVGMLAELRQ-LREDLVLVAMSATVEAERFAGLLG 229 Query: 169 --PEAPVVISEGRSFPVERRYLPLPAHQRFDD-------------AVAVATAEMLRQE-S 212 APVV P+ ++ P P QR D+ A A L Q+ S Sbjct: 230 GEAPAPVVDCPSALHPLAVQWAPGP--QRLDERGVTPSFLSHMARTAADAHRRALAQDPS 287 Query: 213 GSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMR-KVVLA 271 L+FLPG E+ V +L ++VL L+G L +Q +A+ G R ++V+ Sbjct: 288 VDALVFLPGAREVSHVAAELRGLTDAEVLE--LHGQLPPREQDRAVAGRGPGERPRIVVT 345 Query: 272 TNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGI 331 T++AE+SLT+ G+RLVVD R R D G++ L+T S+AS QRAGRA R PG Sbjct: 346 TSLAESSLTVNGVRLVVDSGLARQPRRDAGRGISGLVTVSASKASAEQRAGRAARQGPGT 405 Query: 332 SLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQ-PPVVNLLAAK 390 + A + PE+ +DL+ + L WG M+ D PP A Sbjct: 406 VVRCYDDAAWGAMPAHTVPEVRTADLTAACLALAVWGSPGGEGMALPDPLPPRARADADA 465 Query: 391 RLLQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG 450 L+++ E R + G+ + +L +PR L+ + A TAA++ A + + R+ Sbjct: 466 ELVRLGAVAEDGRATDLGRLLVSLPVEPRWGRALLDGADLVGARTAAEVIASVSDGARVP 525 Query: 451 NSDL-----GVAFSRNQPAWQQRSQ-QLLKRLNVR---GGEADSS---LIAP-------- 490 +D+ G+ SR + + R + Q L+R+ GG AD S AP Sbjct: 526 AADIPALVRGLRSSRGGESTRWRREVQRLERMTAHPAAGGPADGSGEDTDAPPRGPEPDV 585 Query: 491 --------LLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHEWLIAPLLLQGS 541 ++ A + +ARR G ++ LA+G A L+A L HEWL L + + Sbjct: 586 PAEVREGVVVGLARPEWMARRADAHGDQWLLASGTRAGLEAGSPLRHHEWLAVAELTRAA 645 Query: 542 ASPDAR----ILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKV 597 A I A +D+ L + + + + + + R +G + + Sbjct: 646 GRAAAGTGAVIRAAAPLDLQHAQLVAGSLARTETRASFSNGRVSTREVR--AVGAIELSA 703 Query: 598 QPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESL 657 P+ + D A+ + +GL +L W +A + L + WPAVDD +L Sbjct: 704 TPV-RADPDTAVPAIRAALAAEGLDLLPWD-DAARGLRARLALLRRHLGQPWPAVDDAAL 761 Query: 658 LAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAI 717 LA E WL P + V L+S+ + ALR LL W RLD P VP+G+ I Sbjct: 762 LARAEEWLGPELRDVARGGSLRSVRVADALRRLLPWPDAARLDELAPRRLDVPSGNTARI 821 Query: 718 RY----HEDNP---PALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 Y ED+P P +AV++QE FG A P +A GRVP+ LLSP + L IT DL+ Sbjct: 822 AYPEVFDEDDPARPPVVAVKLQECFGWAETPRVADGRVPVQFHLLSPGKATLAITEDLAS 881 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FW G Y +V+ EM+GRYPKH WP+DP N T +T + Sbjct: 882 FWSGPYAQVRAEMRGRYPKHPWPEDPWNAVATAKTSR 918 >UniRef50_Q00XA1 ATP-dependent helicase HrpB (ISS) n=2 Tax=cellular organisms RepID=Q00XA1_OSTTA Length = 1005 Score = 301 bits (772), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 205/462 (44%), Positives = 280/462 (60%), Gaps = 38/462 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-----------------H 44 SSLP+ A ++L ALD + V+ AP GAGK+T +PL + A H Sbjct: 53 SSLPIGACAEDVLKALDESRCVVAQAPPGAGKTTVIPLLIAAARADGWSASRGDDARAGH 112 Query: 45 PGING---KIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTE 101 G G +++LEPRRLAAR A R+A L EK G++VGY +R + T +EVVTE Sbjct: 113 DGRRGGGKTVLVLEPRRLAARAAATRMAATLGEKVGESVGYAVRFERKASSRTVVEVVTE 172 Query: 102 GVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD- 160 GVL R ++RDPEL+GVG VI DEFHER L DLALAL + Q+ +R DL+LL+MSATL Sbjct: 173 GVLMRRLRRDPELAGVGAVIFDEFHERHLDGDLALALCREAQRTIRPDLRLLVMSATLGA 232 Query: 161 -NDRLQQML----------PEAPVVISEGRSFPVERRYLPLPA--HQRFDDAVAVATAEM 207 R+ +L + P+++SEGRS+PVE Y+ P + A A E Sbjct: 233 VGTRVADLLRDDAGEEGGSEDVPIIVSEGRSYPVETIYMGPPGVGFGELERAATKAVKEA 292 Query: 208 LRQE-SGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMR 266 +R G +L FLPG EI RV +L + ++V PLYGALS DQ A+ P+ G R Sbjct: 293 IRTTPDGDVLCFLPGAAEINRVVRELQGELPNNVTALPLYGALSQEDQALALAPSKPGAR 352 Query: 267 KVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGR 326 +VV++T IAE+SLTI G+++VVD + RFDPR G+TRL R+S+AS QR GRAGR Sbjct: 353 RVVVSTPIAESSLTISGVKIVVDSGLCKTPRFDPRKGMTRLELTRISRASADQRRGRAGR 412 Query: 327 LEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNL 386 + PG+ L ++ E+ A + PEILQ+DL+ + ++L WG D +++WLD PP L Sbjct: 413 VAPGVCYRLWSESMNEKLAPDTTPEILQADLAPVALDLATWGIRDANELAWLDPPPEGPL 472 Query: 387 LAAKRLLQMLGALEGERL---SAQGQKMAALGNDPRLAAMLV 425 +AA+RLL+ LGAL GE + SA G+ M+ L PR+ ML+ Sbjct: 473 IAARRLLRELGALSGEDVVAPSALGRVMSDLPLHPRMGRMLL 514 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 180/347 (51%), Gaps = 26/347 (7%) Query: 483 ADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAML---DANDAL------SRHEWLI 533 A S + LLA A+ DRIA R+ + G + L+ G A + +DAL S +I Sbjct: 663 AGESEVGLLLALAYPDRIAARKSRGGAFSLSGGGAASVGPDHKDDALLQYADKSSETLVI 722 Query: 534 APLLLQGSASPDARI-LLALLVDIDELVQRCPQ------LVQQSDTVEWDDAQGTLKAWR 586 A L G+ + AR + + ID P L ++ D + W A ++ A R Sbjct: 723 AELAGDGAGNAGARNDRVRVAAPIDRSCFDGPDGALFEALAEERDEIFWASASKSVLARR 782 Query: 587 RLQIGQLTVKVQPLA-KPSEDELHQAMLNGIRDKGLS---VLNWTAEAEQLRLRLLCAAK 642 RL +G L ++ PL+ K D AML+GIR+ G LN TA++ R + + Sbjct: 783 RLTVGSLALRELPLSMKDDPDATVSAMLDGIREMGFVNAFSLNQTAKSWLRRSEFVHRSG 842 Query: 643 WLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSE 702 P + P V +ESLL WL P + G S L +D+ ++ RL Sbjct: 843 VDPTF--PDVSEESLLRTAPEWLAPWIGGATSKSDLSKIDVMSLIKAQFATHDHLRLVEN 900 Query: 703 L-PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRP 761 L PA T+P+G+++ + Y E + P +A ++QE +G + P I G +P L LLSPA RP Sbjct: 901 LCPATTTLPSGTKVTVDY-EGDVPIVAAKIQEFYGLVSTPLI--GGIPCELHLLSPAGRP 957 Query: 762 LQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ITRD++ FW GAY ++ KE++GRYPKH WPDDPAN PT +TKK+ Sbjct: 958 QAITRDIASFWAGAYVDIAKELRGRYPKHFWPDDPANAKPTSKTKKF 1004 >UniRef50_C8RUP0 Probable ATP-dependent rna helicase protein n=2 Tax=Corynebacterium jeikeium RepID=C8RUP0_CORJE Length = 683 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 247/737 (33%), Positives = 359/737 (48%), Gaps = 83/737 (11%) Query: 96 LEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDV----QQGLRDDLK 151 ++ VT GVL + DP L GVG V++DE HER L +DL LA+ +V + ++L Sbjct: 1 MDFVTPGVLLNRLLADPALEGVGAVLIDEVHERQLDSDLVLAMCQEVAMLREGDPTEELY 60 Query: 152 LLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQ- 210 L MSAT+D +L + + A VV + + P+E Y P P + A A++ +Q Sbjct: 61 LCAMSATVDTQKLAEYM-GAQVVSTPAVTHPLEISYHPHPERAQGSPAFYRHVAKLAQQA 119 Query: 211 -----ESGS----LLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPA 261 ESG L+F+PG EI V L PL+G+L+ +Q A+ Sbjct: 120 IDNQRESGHADHRTLVFVPGRKEIDWVCTHLPD-------AAPLHGSLTSQEQDAAL--- 169 Query: 262 PQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRA 321 G +V+AT+IAE+SLT+ G+ V+D R R D G++ L+T S+AS QRA Sbjct: 170 -TGDSPIVVATSIAESSLTVPGVHAVIDAGLSRTPRRDQARGMSGLVTTSTSRASADQRA 228 Query: 322 GRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQP 381 GRAGRL PG + A PEIL SDL + L WG D +S LD P Sbjct: 229 GRAGRLGPGQVYRAYSAADYSHFAPDITPEILSSDLVAAALTLAAWGSPD---ISLLDAP 285 Query: 382 PVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIA 440 P L A + L LGAL+ + ++ GQK+A + DPRL A L++ + AAK+ Sbjct: 286 PAATLTVAHQELHYLGALDSKGSITELGQKLARIPADPRLGAALLA-----HGSGAAKVV 340 Query: 441 AILEEPPRMG-NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADR 499 A L G DL A PA + R + + +N G ++ ++A A+ DR Sbjct: 341 AALA----TGLQGDLAEA---KPPASEVR--RFARMVNDHG----TATPGDIVASAYPDR 387 Query: 500 IARRRGQDGR---YQLANGMGAML--DANDALSRHEWLIAPLLLQGSASPDARILLALLV 554 +A+ G D Y LA+G A L + LS EWL + G L+ Sbjct: 388 VAKLVGTDADQAVYLLASGTRATLAPELRRTLSGSEWLAVAEVQLGRTP--------LIR 439 Query: 555 DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQP--LAKPSEDELHQAM 612 L Q P +++ T +G L+A R +G + + P +++ SE + HQA Sbjct: 440 AAASLQQPSPSQIREDVTAHI--TEGKLRARRTRHLGAIELSSTPVSVSELSEADRHQA- 496 Query: 613 LNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP--AVDDESLLAALETWLLPHMT 670 + + +GL L T A ++ R+ + L E WP A D + P Sbjct: 497 VAALAAEGLGWLQMTEGASIVKERVDYLRQQLGE-PWPDLATGDYT----------PEAE 545 Query: 671 GVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVR 730 V + + +D YQA+ L W R+D +P VP+GS I Y E P + V+ Sbjct: 546 RVVAGERIVDIDAYQAIMRQLPWPEAGRMDELVPERLEVPSGSAPKIGY-ETGRPIVRVK 604 Query: 731 MQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKH 790 +QE FG A +PTIA +V + LLSPA R L +T DL FW G Y+ V+K+M+GRYPKH Sbjct: 605 LQECFGLAESPTIAGKKV--LFHLLSPAGRELAVTDDLKSFWDGPYQGVRKDMRGRYPKH 662 Query: 791 VWPDDPANTAPTRRTKK 807 WP+DP + T++TK+ Sbjct: 663 PWPEDPWSATATKKTKR 679 >UniRef50_D0LYT6 ATP-dependent helicase HrpB n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYT6_HALO1 Length = 891 Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 196/467 (41%), Positives = 259/467 (55%), Gaps = 25/467 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 + LP+ VLP L+ AL +L AP GAGK+T +P LL A +G+I +LEPRRLA Sbjct: 3 ARLPIDEVLPALIDALRERSSAVLLAPPGAGKTTRVPPALLDAGLAGDGEIAVLEPRRLA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+AE L E+ G VGY +R V TR+ VTEGVLTR + DP LSGVG V Sbjct: 63 ARMAAQRVAEELGERVGGRVGYEVRFDRAVSAETRIRFVTEGVLTRKLLGDPGLSGVGAV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DEFHER LQ DLALALL +QQ R L+L++MSATLD + L E PVV SEGR Sbjct: 123 VIDEFHERHLQGDLALALLRRLQQRDRPGLRLVVMSATLDPGPVSAFLGECPVVRSEGRQ 182 Query: 181 FPVERRYLP----LPAHQRFDDAVAVA----------TAEMLRQESGSLLLFLPGVGEIQ 226 +PVE Y P +R AV VA A+ G +L+FLPG GEI+ Sbjct: 183 YPVELDYAAPGDDRPLAKRVAGAVRVALRHRPEQAPEQAQAQDPAGGDVLVFLPGAGEIR 242 Query: 227 RVQEQLASR--------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 + +G L L+G L +Q +A+ P+ + RKV+ ATN+AE+S Sbjct: 243 AAMDACRGERGQPAGLDLGQRADLVALHGDLPAAEQDRAVRPSAR--RKVIFATNVAESS 300 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 +TI+G+ V+D RVAR P +G+ L + +SQAS QRAGRAGR PG + L + Sbjct: 301 ITIDGVTTVIDSGLARVARHAPWSGIPTLRVEPISQASAAQRAGRAGRTAPGRCVRLYTR 360 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 + + A PEI ++DL+ + L W + PP L AA LL+ LGA Sbjct: 361 HEHDSRPAFDPPEIARADLAEAALWLRALDIDPLDGFGWYEAPPEAALRAADELLERLGA 420 Query: 399 LEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE 445 + G RLS G+ M L PR A +L+ A+ A +AA+L E Sbjct: 421 VAGGRLSKLGRAMLRLPVHPRQARLLLEAQARGVGAEGCVLAALLGE 467 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 2/89 (2%) Query: 704 PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQ 763 P H + R+ + Y D PP + R+Q+ F + P++ G VPL L LL+P QR +Q Sbjct: 783 PRHVDIAGRRRVPVHYESDRPPWIESRLQDFFSMSAGPSV--GGVPLTLHLLAPNQRAVQ 840 Query: 764 ITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 ++ DL+ FW+ Y ++K++ RYPKH W Sbjct: 841 VSADLAGFWERHYPALRKQLMRRYPKHAW 869 >UniRef50_C0VRT2 ATP-dependent helicase n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VRT2_9CORY Length = 697 Score = 275 bits (703), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 255/789 (32%), Positives = 375/789 (47%), Gaps = 125/789 (15%) Query: 23 VLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGY 82 +++ AP G GK+T +P L + GK+I+ PRR+ AR A+RL L + VG+ Sbjct: 28 LVVEAPPGTGKTTLVPPALANI--LAGKVIVTSPRRVTARAAARRLRHLSGDP--HAVGH 83 Query: 83 RMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDV 142 R++ + G + +E VT VL + RDPEL G+G VI+DE HER + D+ L +L+++ Sbjct: 84 RVKGDSQAGRD--VEFVTPRVLINALLRDPELPGIGGVIIDEVHERHVDTDVLLGMLIEL 141 Query: 143 QQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAV 202 Q LR+DL ++ MSAT D R +++ A V E FP+ Y P P + D Sbjct: 142 SQ-LREDLHVVAMSATADAQRFAELM-GAGVASYEAPMFPLTTVYKPHPDRIQLTDDYLR 199 Query: 203 ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAP 262 A G L+F+P + +++R+ + + PL+G LS +Q +A+ + Sbjct: 200 HVASF---AEGRALIFVPRIRDVERLTNMIPGAL-------PLHGGLSAKEQDRALTRS- 248 Query: 263 QGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAG 322 V+AT IAE+SLT+ G+ LV+D ER + D G+T L+TQ +SQ+S +QRAG Sbjct: 249 ---DATVVATPIAESSLTVPGVSLVIDTGLERQPKRDAVRGVTGLVTQTISQSSASQRAG 305 Query: 323 RAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPP 382 RA R PG + +A+ PEI +DL+ ++ L WG D + LD P Sbjct: 306 RAVREAPGTVIRCY--READLTRPYPTPEIASADLTEAILTALAWGSDD---LPMLDSFP 360 Query: 383 VVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAI 442 A L+ LG ++G ++ G+K A + DPR AA L+ + A +A + Sbjct: 361 EKAYADALATLRSLGLVDGS-ITELGRKAATVPTDPRAAATLLKLGS----GAAKTLAKL 415 Query: 443 LEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIAR 502 ++ PR L RL R D +A A + IAR Sbjct: 416 TDDDPRR-----------------------LARLTHRSQPVDPGTVA---ATMRPEWIAR 449 Query: 503 RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARIL--LALLVDIDEL- 559 R+G Y A G A L D R W++A + + SP ++ +L D E Sbjct: 450 RQGDT--YLTAAGFRAQL--KDVPLRGTWIVATDVTR---SPRGYVIHHAEVLGDTPETE 502 Query: 560 VQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDK 619 V R Q+V +G L+A +G + VK P+ +P+ +ELH+ + K Sbjct: 503 VTRKTQVV-----------EGKLQARLVEHVGAIVVKETPV-QPTAEELHR--FEASKPK 548 Query: 620 GLSVLNWTAEAEQLRLRLLCAAKWLPEYD-WPAVDDESLLAALETWLLPHMTGVHSLRGL 678 +S A A L RL+ A E+D WP E + Sbjct: 549 QMS-----ARARNLYERLVFAH----EHDGWP----EPVPGD------------------ 577 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 Y+AL G + W + DS P +T P G+ I Y E P +A ++QE FG Sbjct: 578 -----YKALMGQVPW---DKFDSIPPETWTSPAGNNHRINYTEHG-PEVACKLQECFGLT 628 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN 798 PTI VP++ ELLSPA R L T DL+ FW G Y V+ +M+GRYPKH WP+DP Sbjct: 629 ETPTILG--VPIIFELLSPAGRSLARTGDLASFWAGPYAGVRADMRGRYPKHPWPEDPLT 686 Query: 799 TAPTRRTKK 807 PT RTKK Sbjct: 687 ATPTARTKK 695 >UniRef50_C5C946 ATP-dependent helicase HrpB n=2 Tax=Micrococcus luteus NCTC 2665 RepID=C5C946_MICLC Length = 893 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 296/887 (33%), Positives = 420/887 (47%), Gaps = 96/887 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL---LAHPGINGKIILLEPRR 58 + L AA LP+L ALD ++ AP G GK+T +P L LA G G++++ +PRR Sbjct: 23 AGLTFAAALPDLEAALDARGVAVVEAPPGTGKTTVVPPALVVRLADRG-GGRVLVTQPRR 81 Query: 59 LAARNVAQRL-----AELLNEKPGD-----------TVGYRMRAQNCVGPNTRLEVVTEG 102 +A R +RL A + +PG VGY +R G + +E VT G Sbjct: 82 VAVRAAWRRLRTAVLAAAADVQPGADPDAQARLGDAAVGYAVRGDAAGGGASAVEFVTPG 141 Query: 103 VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND 162 +L R + DP L GV V+LDE HER L D+ ALL D++Q LR +L L+ MSAT+D Sbjct: 142 LLLRRLLADPGLDGVDAVVLDEVHERDLDTDVLFALLADLRQ-LRPELALVAMSATVDAA 200 Query: 163 RLQQMLPEA-------PVVISEGRSFPVERRYLPLPAHQ-----RFDDAV---------A 201 L PVV + P+ + P H+ R D A Sbjct: 201 ALAARWARGMGEDAPLPVVSTPAVLHPLREEHAPFRGHRLTAEGRVDRAFLDHVAATAAR 260 Query: 202 VATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAIL-- 259 + S L+FLPGV E++ V ++A+ + D + L+G DQ A+ Sbjct: 261 AHAEALDADPSVDALVFLPGVAEVETVAGRVAA-LAPDTEVRVLHGRQEPADQDAALAGR 319 Query: 260 --PAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASM 317 PA + +VV+AT +AE+SLT+ G+RLVVD R R D G+ L+T + S+A+ Sbjct: 320 TDPA---VPRVVVATAVAESSLTVPGVRLVVDSGLAREPRRDRGRGMDGLVTVQASRAAA 376 Query: 318 TQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSW 377 QRAGRA RL PG + A A P + DL+ + + WG ++ Sbjct: 377 GQRAGRAARLGPGTVVRCHTAAALGTAPAAPTPALAVVDLAPVALAFAAWGAPGGRGLTL 436 Query: 378 LDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATA 436 + PP + AA+R L LGA++ + R++ G +A L DP L L+ A A Sbjct: 437 PEDPPADAMAAAERTLASLGAVDADGRITPHGAVLAELPLDPPLGHALLRAAPWTGPRPA 496 Query: 437 AKIAAILEEPPRMGNSDL-----GVAFSRNQPAWQ-QRSQQLLKRLNVR---------GG 481 A+ A L R +DL V R+ A + +R L+RL R G Sbjct: 497 AEATAALALDLRAPGADLEALVAAVRDGRHPEAGRWRREADRLERLARRHAHHAPDEPGP 556 Query: 482 EADSS-------LIAPLLAGAFADRIARRRGQDGRYQLANGMGAML--DA-NDALSRHEW 531 EA ++ L+A A AF IARR G+ G Y LA+G A L DA L+ EW Sbjct: 557 EAAATARRHPAGLVA---AQAFPAWIARRAGEAGAYLLASGTRAALPRDAVGGGLAGQEW 613 Query: 532 L-IAPLLLQGSASPDARILLALLVDIDELVQRCPQ--LVQQSDTVEWDDAQGTLKAWRRL 588 L +A + + A ++ ID + L + DT +W +G RR+ Sbjct: 614 LAVAEVARVAGDAAGAGAVIRAAAPIDRSLAELAGAGLRRTEDTADW---RGDRLTGRRV 670 Query: 589 -QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 ++G L + P A + D QA+ + GL+ + + AE+LR R+ + L Sbjct: 671 DRLGALVLAETP-ASVAPDAAAQAVRAALAADGLARFDPSGRAERLRRRVHLLHRVL-GA 728 Query: 648 DWPAVDDESL--LAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 WP + D +L L AL + + R L LD LRG L W RLD P Sbjct: 729 PWPDLSDAALPGLGALVDGFAADLA---AGRPLTRLDAEALLRGALPWPEAGRLDELAPE 785 Query: 706 HYTVPTGSRIAIRY---HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPL 762 VP+G + + Y HED PP +A ++QE FG P +A GR P+VL LLSPA RPL Sbjct: 786 RLPVPSGRAVVVDYPAVHEDTPPVVAAKLQEFFGARVTPAVADGREPVVLHLLSPAGRPL 845 Query: 763 QITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 +T DL FW G Y +V+ E +GRYPKH WP+DPA PT RT + + Sbjct: 846 AVTADLPSFWAGPYAQVRAENRGRYPKHPWPEDPAAAEPTARTNRRA 892 >UniRef50_B2UM09 Helicase ATP-dependent domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM09_AKKM8 Length = 861 Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 173/450 (38%), Positives = 261/450 (58%), Gaps = 27/450 (6%) Query: 1 MSSLPVAAVLPELLTALDC-APQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRR 58 SSLP+ + EL+ AL +P++LL APTG+GKST +P + A G G I++++PRR Sbjct: 3 FSSLPIEEIRGELMEALRVPSPRILLKAPTGSGKSTGVPPMMDDAGLGDRGLIVVVQPRR 62 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +AAR +A+ +A L + G VGY +R + + TR+ VT+G+L R + P L GV Sbjct: 63 MAARLLARHVARLRGVELGKEVGYAVRFERYISSRTRIAYVTDGMLERWLTEWPSLEGVS 122 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVI-SE 177 V+ DEFHERSL DL+L +LD+Q+G R DL +++MSATL+ L++ + + V+ ++ Sbjct: 123 AVVFDEFHERSLSGDLSLGRVLDLQEGPRRDLAVVVMSATLEISGLREYMGGSCRVLEAQ 182 Query: 178 GRSFPVERRY-------------LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGE 224 GR +PVE Y P P ++ D V A E + G +L+F+PGV E Sbjct: 183 GRQYPVEVVYRAPRLVSDGRGRVAPPPIWEQAADVVREAVRE---DDCGDVLVFMPGVYE 239 Query: 225 IQRVQEQLASR---IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTI 281 I++ E LA + G DV PLYG+L+ Q A+ + +V+++TN+AETSLTI Sbjct: 240 IRKTVELLAGKPWMSGRDVF--PLYGSLAPEQQNCAVERG--DIPRVIVSTNVAETSLTI 295 Query: 282 EGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA 341 EG+R VVD R + +DP G+ L ++S+AS QRAGRAGR+ PG L ++ + Sbjct: 296 EGVRTVVDSGLVRRSGWDPYRGMDTLHLVKISKASAAQRAGRAGRVAPGRCFRLWSEAEQ 355 Query: 342 ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG 401 R PE + DL+G ++ L WG + P WLD P + + A LL LGA E Sbjct: 356 ARKEDFDPPECFRVDLAGAVLNLAAWGVTVPENFRWLDVPAPLVMQRAVNLLAALGATEE 415 Query: 402 E-RLSAQGQKMAALGNDPRLAAMLVSAKND 430 + L+ G++M A PRLA ++V+ +++ Sbjct: 416 DGSLTDTGKRMTAFPLPPRLARLMVAGQDE 445 Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 146/303 (48%), Gaps = 8/303 (2%) Query: 495 AFADRIARRRG-QDGRYQLANGMGAMLDANDALSRHEWLIAPLL--LQGSASPDARILLA 551 +FAD + R G ++A G+G L + + E +A + L G A + R+ Sbjct: 553 SFADHVGVRNGVAANTCRMAGGVGGRLAEGSVVFQGEHFVAAEVAELSGKAV-ETRVGRC 611 Query: 552 LLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQA 611 L+ ++L P+ + +D A ++ R+L G L ++ + + Sbjct: 612 TLIAPEDLRSIWPERFSCGEEAVFDAALRRVRLHRKLMYGDLVLEDRDRGDAPPELAAPV 671 Query: 612 MLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTG 671 + + D L ++ W EQ RL + W+PE + P +E L A+ G Sbjct: 672 LAEKVVDGTLKLVKWNDAVEQWIRRLNGLSVWMPELELPRFSEEDKLVAISL----VCEG 727 Query: 672 VHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRM 731 + +K +I LR L + LD P T+P G +RY ED+ P +++ + Sbjct: 728 AVGYKDIKEREIIPVLRDWLSGWQAKALDDYAPVSLTLPNGQHAKVRYGEDSSPVISLTV 787 Query: 732 QEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHV 791 Q +FG A +P IA G VP+++E+L+P+QRP Q+T L FW+ Y +++K++ GRYP+H Sbjct: 788 QRLFGVAVSPRIANGAVPVIVEVLAPSQRPWQVTGSLESFWRNGYGQMKKDLAGRYPRHR 847 Query: 792 WPD 794 WPD Sbjct: 848 WPD 850 >UniRef50_Q10752 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 n=162 Tax=Eukaryota RepID=CDC28_SCHPO Length = 1055 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 159/437 (36%), Positives = 242/437 (55%), Gaps = 15/437 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI---NGKIILLEPRRL 59 SLPV +LL A++ +L+ A TG+GK+T LP Q L G N KI +PRR+ Sbjct: 417 SLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLP-QFLHEAGYTKGNKKICCTQPRRV 475 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA R+A+ ++ + G VGY +R +N T ++ +T+G+L R +P+L+ + Sbjct: 476 AAMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSV 535 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I+DE HER+L D+ L+ D+ + R DLK+LI SAT+D ++ EAPV GR Sbjct: 536 IIIDEAHERTLHTDILFGLVKDIAR-FRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGR 594 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ-------L 232 +PV+ Y P P A+ Q +G +L+FL G EI+ + E L Sbjct: 595 RYPVDIYYTPQPEANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRIL 654 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 RI +++LCP+Y L Q K P P G RKVVLATNIAETS+TI+G+ V+D Sbjct: 655 GKRI-PEIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGF 713 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ-SEPE 351 + ++PRTG+ L++ S+AS QRAGRAGR+ PG L + + PE Sbjct: 714 VKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPE 773 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQK 410 I +++L+ +++ L G ++ ++D PP L+ + LL LGAL L+ G++ Sbjct: 774 IQRTNLTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQ 833 Query: 411 MAALGNDPRLAAMLVSA 427 MA DP L+ L+++ Sbjct: 834 MAEFPTDPMLSKSLIAS 850 >UniRef50_A4U4B3 HrpA-like helicases n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4B3_9PROT Length = 522 Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 181/471 (38%), Positives = 255/471 (54%), Gaps = 39/471 (8%) Query: 368 GCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVS 426 G ++P + +PP L A+ LL LGAL+ + L+ G+ M L PRLA M++ Sbjct: 56 GSANPTKWPGWTRPPAAALTQARELLTELGALDQDGGLTVHGRAMNRLSMHPRLAHMVLR 115 Query: 427 AKNDDEAATAAKIAAILEE----------------------------PPRMGNSDLGVAF 458 A++ A A IAA+L E PR G A Sbjct: 116 ARDMGAAGLACDIAALLSERDVLRAERGGRDGDIRLRLDALRGGDGLDPRHGQGVDRGAL 175 Query: 459 SRNQPAWQQRSQQLLKRLNVRGGE--ADSSLIAPLLAGAFADRIARRR-GQDGRYQLANG 515 +R + Q ++ +RL +R GE D+ LLA A+ DRIA+RR G + RY L+ G Sbjct: 176 ARAR----QSAKDWRRRLGLRMGEQECDARECGVLLAFAYPDRIAKRRPGGEPRYALSGG 231 Query: 516 MGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEW 575 GA ++ L+ +WL+A + L G +ARI LA + ++ + ++ D V W Sbjct: 232 RGAFFQDHEPLAAQDWLVA-VELDGDKR-EARIFLAAALTRADIDAHFAESIRIEDKVGW 289 Query: 576 DDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRL 635 D + A RR + LT++ + L K + D L AM G+R GL+ L WT E ++ R Sbjct: 290 DRRDEVVTAARRTCLFALTLEERRLDKVAPDALAAAMAEGVRQMGLACLPWTDELQKFRR 349 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGM 695 RL + E WP + D++LL L+ WLLP++TG+ L+ LD+ ALRGLLDW Sbjct: 350 RLAFLRRHDAEGGWPDLSDQALLDTLDQWLLPYLTGITRRAHLQKLDLNAALRGLLDWQA 409 Query: 696 QQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755 +RLD P H +VP+GSR+ I Y D P LAVR+QEMFG A P IA RVP+++ LL Sbjct: 410 DKRLDEMAPTHISVPSGSRVPIDYDGDE-PVLAVRLQEMFGCADTPRIAGDRVPVLMHLL 468 Query: 756 SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 SPA+RP+Q+TRDL+ FW AY V+ ++KG+YPKH WPDDP PT R K Sbjct: 469 SPARRPVQVTRDLASFWANAYHAVKADLKGQYPKHWWPDDPMQAEPTARAK 519 >UniRef50_A4BTJ3 ATP-dependent helicase HrpA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTJ3_9GAMM Length = 1294 Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 166/453 (36%), Positives = 260/453 (57%), Gaps = 11/453 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 ++LP+ E+ AL +++ TG+GKST LP + L + G+ G I +PRR+A Sbjct: 78 AALPIMDQRAEIARALSAHQVIVVCGDTGSGKSTQLPQIALASGFGVEGMIAHTQPRRIA 137 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR++A R+AE LN + G VGY++R + V +TRL++VT+G+L Q DP+L+ + Sbjct: 138 ARSLATRIAEELNTEVGAGVGYKVRFSDRVRFSTRLKLVTDGMLLAETQGDPDLAHYDTI 197 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R +LK++I SAT+D R + AP++ GRS Sbjct: 198 IIDEAHERSLNIDYLLGYLKRLLPR-RPELKVIITSATIDPQRFSRYFNGAPIIQIAGRS 256 Query: 181 FPVERRYLPLPAH------QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 +PVE RY PL + + +A+ A E+ + +G +L+FLP +I+ E L Sbjct: 257 YPVEIRYRPLVSEDEDERDRSLPEAILEALDELAAETAGDVLVFLPSERDIRETAENLRK 316 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + PL+G LS +Q + AP R++VLATN+AETSLT+ GIR VVD R Sbjct: 317 HHPPRTEVLPLFGRLSATEQLRVF--APHDRRRIVLATNVAETSLTVPGIRHVVDSGLAR 374 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++R+ RT + RL + +S+AS QRAGR GR PG+ + L A+ + A +EPEIL+ Sbjct: 375 ISRYSYRTKVQRLPIEPISRASADQRAGRCGREAPGVCIRLYAEADYQVRAEFTEPEILR 434 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAA 413 ++L+ +++++ + + ++D P + +LL LGA+ + L+ G+++AA Sbjct: 435 TNLASVILQMKYLKLGEIERFDFIDPPDSRAIRDGLKLLYELGAVAADNTLTGLGRRLAA 494 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP 446 L DPR+A MLV+ + + IAA L P Sbjct: 495 LPVDPRIARMLVAGETERALNEVLVIAAALSIP 527 >UniRef50_Q1YSZ9 ATP-dependent helicase HrpA n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=Q1YSZ9_9GAMM Length = 1309 Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 172/480 (35%), Positives = 270/480 (56%), Gaps = 8/480 (1%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV+A E+ L ++++ TG+GK+T +P + L A G+ G I +PRR+AAR Sbjct: 85 LPVSARADEIAELLTKHQVIVVAGETGSGKTTQIPKICLQAGRGVRGLIGHTQPRRIAAR 144 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA R+AE L G+ VGY++R + PN+ ++++T+G+L IQRD LS +I+ Sbjct: 145 TVATRIAEELKVNIGEAVGYQVRFSDQSAPNSLIKLMTDGILLAEIQRDRFLSAYDTIII 204 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L ++ R DLK++I SAT+D D+ + +APVV GRSFP Sbjct: 205 DEAHERSLNIDFLLGYLKNLLPQ-RPDLKIIITSATIDVDKFSKHFNDAPVVEVSGRSFP 263 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLR--QESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 V+ Y + D + V + + Q++G +L+FL G EI+ V + Sbjct: 264 VDVIYNHPDDLEADRDQMIVDCLQDIHHNQKAGDVLIFLSGEREIREVNLAIKRAQLPHT 323 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PLY LSL +Q K +P R++VL+TN+AETSLT+ GIR V+D + RV+R+ Sbjct: 324 EVVPLYARLSLAEQSKIF--SPHRGRRIVLSTNVAETSLTVPGIRYVIDTGRARVSRYSF 381 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RT + RL + +SQAS QRAGR GR+ G+ L ++E E A ++PEI++++L+ + Sbjct: 382 RTKVQRLPIEAISQASANQRAGRCGRIADGVCYRLYSEEDFEGRPAFTDPEIVRTNLAAV 441 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGNDPR 419 ++++LQ D ++D P + +LL+ L A+ E +LS G+++ + DPR Sbjct: 442 ILQMLQLRIGDIRNFPFVDPPDSRMISDGFKLLEELQAVTEDGKLSNLGKRLVNIPLDPR 501 Query: 420 LAAMLV-SAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 A ML+ SAKN A + + PR +D A ++ WQ+ + + LN+ Sbjct: 502 FARMLLESAKNGCLAEVMIITTGLSIQDPRERPADKQQAADQSHKKWQEPNSDFVSLLNL 561 >UniRef50_C0NP73 ATP-dependent RNA helicase DHX8 n=10 Tax=Dikarya RepID=C0NP73_AJECG Length = 1266 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 187/539 (34%), Positives = 272/539 (50%), Gaps = 41/539 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 SLPV +LL A+ +++ TG+GK+T L Q LA G NG I +PRR+A Sbjct: 601 SLPVFKFRKQLLEAVTENQLLIVVGDTGSGKTTQL-TQYLAEGGFANNGIIGCTQPRRVA 659 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E + + G VGY +R ++C P T+++ +T+G+L R I DP+L ++ Sbjct: 660 AVSVAKRVSEEVGCRLGAEVGYTIRFEDCTSPETKIKYMTDGILQREILLDPDLKKYSVI 719 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL Q R DLK+++ SATLD D+ + P+ GR+ Sbjct: 720 MLDEAHERTISTDVLFGLLKKTIQ-RRPDLKIIVTSATLDADKFSEYFNMCPIFSIPGRT 778 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 +PVE Y P D A+ L + +G +LLFL G EI E L R+ + Sbjct: 779 YPVEIMYSREPESDYLDAALVTVMQIHLTEPAGDILLFLTGQEEIDTACEILYERMKALG 838 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++ P+Y AL Q + PAP G RKVV+ATNIAETS+TI+ I VVD + Sbjct: 839 PSVPELIILPVYSALPSEMQSRIFEPAPPGSRKVVIATNIAETSITIDQIYYVVDPGFVK 898 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE----- 349 +DP+ G+ L+ +SQA QR+GRAGR PG L + AA QSE Sbjct: 899 QNAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGPGKCFRLYTE-----AAYQSEMLPTT 953 Query: 350 -PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQ- 407 PEI + +LS ++ L G +D ++D PP +L A L L AL+ E L + Sbjct: 954 IPEIQRQNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLTALEELYALSALDDEGLLTRL 1013 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ 467 G+KMA +P LA +L+++ + I A+L + F R + QQ Sbjct: 1014 GRKMADFPMEPALAKVLIASVEMGCSDEMLSIVAMLS---------VHSIFYRPKEKQQQ 1064 Query: 468 RSQQLLKR----------LNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM 516 Q+ K LNV G +S +P F RR QD R QL M Sbjct: 1065 ADQKKAKFHDPHGDHLTLLNVYNGWKNSRFSSPWCFENFIQARQMRRVQDVREQLVTIM 1123 >UniRef50_Q47MH0 ATP-dependent helicase HrpA n=13 Tax=Bacteria RepID=Q47MH0_THEFY Length = 1324 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 174/470 (37%), Positives = 256/470 (54%), Gaps = 31/470 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LPV+ E+L A+ V+++ TG+GK+T LP + L G+ G+I +PRRLA Sbjct: 76 AELPVSQKKDEILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVLGQIGHTQPRRLA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+AE L G+ VGY++R + +T ++++T+G+L IQ+D L + Sbjct: 136 ARTVAARIAEELGTTLGEWVGYKVRFTDVSSDDTLVKLMTDGILLAEIQQDRMLRAYDTL 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D +R + AP+V GR+ Sbjct: 196 IIDEAHERSLNIDFILGYLKRLLPR-RPDLKVIITSATIDPERFSRHFDNAPIVEVSGRT 254 Query: 181 FPVERRYLPLPAHQRFDDAVAVATA--------------EMLRQESGSLLLFLPGVGEIQ 226 +PVE RY PL A Q DD VA E+ + G +L+FL G EI+ Sbjct: 255 YPVEVRYRPLTAEQVVDDEDTVAATDDRDQIQGICDAVDELCAEGPGDILVFLSGEREIR 314 Query: 227 RVQEQLASRIG--------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 E L + V + PLY LS +Q++ P+G R++VLATN+AETS Sbjct: 315 DTAEALGKHLARRYPEGSPQAVEILPLYARLSAAEQQRVF--QPRGKRRIVLATNVAETS 372 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ GIR VVD R++R+ RT + RL +R+SQAS QR GR GR+ GI + L ++ Sbjct: 373 LTVPGIRYVVDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRVAEGICIRLYSE 432 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 E +EPEIL+++L+ +++++ G D + ++D P + LL LGA Sbjct: 433 EDFLSRPEFTEPEILRTNLASVILQMAALGLGDVEEFPFVDGPDRRQVKDGVALLTELGA 492 Query: 399 LE-----GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 L+ RL+A G+ +A L DPRL M+V A + IAA L Sbjct: 493 LQPAKDGRHRLTALGRTLAQLPIDPRLGRMVVEADRNGCLHEVMVIAAAL 542 >UniRef50_B9XI99 Helicase-associated domain protein n=1 Tax=bacterium Ellin514 RepID=B9XI99_9BACT Length = 856 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 180/453 (39%), Positives = 263/453 (58%), Gaps = 15/453 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRL 59 SSLP+ + ++ L +++L APTG+GK+T +P Q++ G+ G KII+L+PRR+ Sbjct: 3 SSLPIWEIHSAIVDQLRTGNRLVLVAPTGSGKTTQVP-QMVLDAGLAGDKKIIVLQPRRV 61 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR VA R+A K GD VGY++R + TR+ VTEG+L R +Q + L +G+ Sbjct: 62 AARTVAARVAWERKGKLGDEVGYQIRFDDHTSLGTRICFVTEGILLRWLQENRNLPDIGM 121 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----APVVI 175 ++ DEFHER+L +D+ALAL+ +Q R DLK+++MSATLD + + L P++I Sbjct: 122 ILFDEFHERNLLSDVALALVKHLQGTQRPDLKMVVMSATLDAEPVADYLSTDKQPCPILI 181 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQ-ESGSLLLFLPGVGEIQR-VQEQLA 233 SEG+SFPVE RYL + D A A ++ E G +L+F+PGVGEI + + Sbjct: 182 SEGQSFPVEVRYLISHDERPITDQAAEAVEAIVNSGEPGDILVFMPGVGEIHSTINASRS 241 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R + PL+G L +Q A P P +RKVV++TN+AETS+TI+GIR VVD Sbjct: 242 VRTNERLAFIPLHGELQPEEQDLAFAPNP--LRKVVVSTNVAETSVTIDGIRHVVDSGIA 299 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R+AR+D G+ L + +S+AS QR GRAGR PG L + ++ PEI Sbjct: 300 RIARYDSERGIGTLGIEEISRASADQRKGRAGRTAPGTCHRLWTESGHLNRPERNTPEIQ 359 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE---GERLSAQGQK 410 +SDL+ +++ L A WLD+P + A+ LL+MLGAL+ GE L+ G + Sbjct: 360 RSDLAEVVLLLHSLHIRKAAAFDWLDKPDAQAVERAENLLRMLGALDESTGE-LTDIGHR 418 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 M L PR + MLV A +A AA++ Sbjct: 419 MRRLPMHPRYSRMLVEAAKLGSVRSAGLCAALV 451 >UniRef50_Q0S1M3 ATP-dependent helicase hrpA n=5 Tax=Corynebacterineae RepID=Q0S1M3_RHOSR Length = 1296 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 186/502 (37%), Positives = 275/502 (54%), Gaps = 38/502 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 SLPV+ ++ A+ V+++ TG+GK+T +P + L G+ G I +PRRLAA Sbjct: 68 SLPVSQRRDDIAKAIAENQVVIVAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAA 127 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA+R+AE L + G+TVGY +R + V T ++++T+G+L IQRD L +I Sbjct: 128 RTVAERIAEELRSELGETVGYTVRFTDQVSDGTLVKLMTDGILLAEIQRDRMLRRYDTLI 187 Query: 122 LDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPE-----APVV 174 +DE HERSL D L L +Q L R DLK++I SAT+D +R Q AP+V Sbjct: 188 IDEAHERSLNIDFILGYL---RQLLPRRPDLKVIITSATIDPERFAQHFATDDGVPAPIV 244 Query: 175 ISEGRSFPVERRYLPLP---AHQRFD----DAVAVATAEMLRQESGSLLLFLPGVGEIQR 227 GR+FPVE RY PL Q FD DAV A E+ + G +L+FL G EI+ Sbjct: 245 EVSGRTFPVEMRYRPLTVDVGDQTFDRDPVDAVCEAVEELSGEGDGDILVFLSGEREIRD 304 Query: 228 VQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLV 287 + L R + PLY LS +Q K P R+VVL+TN+AETSLT+ GIR V Sbjct: 305 TADALRDRRLRGTEIVPLYARLSAAEQHKVF--TPHTGRRVVLSTNVAETSLTVPGIRYV 362 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ 347 VD R++R+ RT + RL + +SQAS QR+GR GR+ GI + L ++E E A Sbjct: 363 VDPGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDFEARPAF 422 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER---- 403 +EPEIL+++L+ +++++ G D A ++ P + LL+ LGA+E + Sbjct: 423 TEPEILRTNLASVILQMTALGLGDIAAFPFVQPPDPRAVRDGIGLLEELGAIERKAQNEQ 482 Query: 404 --LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN 461 L+A G+++A + DPR+A MLV A + A++ I+ S L + R Sbjct: 483 PVLTAVGRELAQIPVDPRMARMLVEAHRN---GCLAEVLVIV--------SALSIQDVRE 531 Query: 462 QPA-WQQRSQQLLKRLNVRGGE 482 +PA +QQ + + R V + Sbjct: 532 RPAEFQQAADEKHARFTVENSD 553 >UniRef50_B5GG28 ATP-dependent helicase n=3 Tax=Streptomyces RepID=B5GG28_9ACTO Length = 1333 Score = 258 bits (659), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 171/490 (34%), Positives = 269/490 (54%), Gaps = 16/490 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV+A ++ A+ V+++ TG+GK+T +P + L G+ G I +PRRLAAR Sbjct: 79 LPVSAKKDDIADAIRAHQVVIVAGETGSGKTTQIPKICLELGRGVRGMIGHTQPRRLAAR 138 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA+R+A L+ G+ VG+++R + V T ++++T+G+L IQ D EL +I+ Sbjct: 139 TVAERVASELDTPLGEAVGWKVRFTDQVSRGTYVKLMTDGILLAEIQTDRELRAYDTIII 198 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L + R DLK++I SAT+D +R + +AP+V GR++P Sbjct: 199 DEAHERSLNIDFLLGYLAQLLP-RRPDLKVIITSATIDPERFSRHFGDAPIVEVSGRTYP 257 Query: 183 VERRYLPLPAHQRFD------DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 VE RY PL A + A+ A E+ R+ SG +L+FL G EI+ + L R Sbjct: 258 VEVRYRPLLAEDSEEPDRDQVTAIIDAVEELRREPSGDILVFLSGEREIRDTADALEKRK 317 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAP-QGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + PLY LS +Q + A R++VLATN+AETSLT+ GI+ V+D R+ Sbjct: 318 FPFTEVLPLYARLSHAEQNRVFKRASGDSARRIVLATNVAETSLTVPGIKYVIDPGTARI 377 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +R+ RT + RL + +SQAS QR GR GR GI + L ++E E ++ EIL++ Sbjct: 378 SRYSSRTKVQRLPIEAISQASANQRKGRCGRTSDGICVRLYSEEDFEARPEFTDAEILRT 437 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE------RLSAQGQ 409 +L+ +++++ G + + ++D P N+ +LLQ LGAL+ E RL+ G+ Sbjct: 438 NLASVILQMTSAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDPEQKDPRKRLTQTGR 497 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQR 468 ++A L DPRLA M++ A + +AA L + PR S+ + ++ Sbjct: 498 RLAQLPVDPRLARMVLEADRNGCVREVMVVAAALSLQDPRERPSEKQAQADQFHARFKDE 557 Query: 469 SQQLLKRLNV 478 + L LN+ Sbjct: 558 TSDFLAFLNL 567 >UniRef50_O01598 Putative uncharacterized protein T05E8.3 n=1 Tax=Caenorhabditis elegans RepID=O01598_CAEEL Length = 856 Score = 258 bits (658), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 177/536 (33%), Positives = 273/536 (50%), Gaps = 34/536 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLAA 61 LP+ AV +L+ L +++ TG+GKST +P QL GI +G I + +PRR+AA Sbjct: 161 LPIDAVEQQLMYELASQETLIVIGETGSGKSTQVP-QLCVRAGIANSGSIAVTQPRRVAA 219 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+A + G VGY +R +N T++E +T+G++ R P L VI Sbjct: 220 ISLASRVATEMGTNIGGIVGYHVRFENATCHKTKIEYMTDGIVLRKALVSPLLDKYSCVI 279 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDD---LKLLIMSATLDNDRLQQMLPEAPVVISEG 178 +DE HERSL +D+ + +L Q R+ L+L+IMSATL ++ Q A VV+ G Sbjct: 280 IDEAHERSLHSDVLMCILRQCQDQRRETNNPLRLIIMSATLQAEKFQSYFNNAKVVLVAG 339 Query: 179 RSFPVERRYLPLPAHQRFDDA-------VAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 R+FP+E ++ ++ F + V + + +L+FL G EI+ V Q Sbjct: 340 RTFPIEVFHVNPKINKSFSSTDYVYNAVICVKYVHLTEPKGRDILVFLTGSEEIEAVASQ 399 Query: 232 LASRIGS-----DVLL-CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 LA GS DVL+ PLY AL Q++A PQG RKV+++TNIAETS+TI GIR Sbjct: 400 LAELNGSLPASADVLMPVPLYAALRPEKQKEAFRKTPQGARKVIISTNIAETSVTIPGIR 459 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 +V+D + + RF+ + L VS+A QRAGRAGR PG L ++E + Sbjct: 460 VVIDSGKVKTKRFEAFNRIDVLKVHNVSKAQAKQRAGRAGRDAPGKCYRLYSREDFHKFE 519 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL---EGE 402 A++ PEIL+ +LS +EL++ G +P ++ +D P N+ AA L LGA+ + Sbjct: 520 AENMPEILRCNLSATFLELMKLGMKNPHRLKLIDPPETDNINAALLELTSLGAIRPVNSD 579 Query: 403 R----LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAF 458 R L+ G P A +L A+ + A KI A ++ G Sbjct: 580 RSKFALTEMGDAFCMYPLPPDHARILFQAQKEGCIMEAIKIVAAMQTDALFS----GAGD 635 Query: 459 SRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 S++ ++ +R R G+ + L L+ F D++ ++ D RY AN Sbjct: 636 SKSDADV----DRIRRRFETREGDHITLLKLVLVTNQFFDQLNKKTESDARYGKAN 687 >UniRef50_A0Z814 Helicase, ATP-dependent n=3 Tax=unclassified Gammaproteobacteria RepID=A0Z814_9GAMM Length = 1246 Score = 258 bits (658), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 166/431 (38%), Positives = 252/431 (58%), Gaps = 11/431 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV E+ A+ V+++ TG+GK+T +P + L G +I +PRRLAAR Sbjct: 23 LPVCERREEIREAISQHQVVIIAGETGSGKTTQIPKICLELGRGQEARIGHTQPRRLAAR 82 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA+R+A+ L + G VGY++R + V P+T ++++T+G+L +QRD EL +I+ Sbjct: 83 RVAERIADELESELGGLVGYKVRFNDSVAPSTAIKLMTDGILLAELQRDRELRDYDTLII 142 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L + R DLK++I SAT+D DR Q APV+ GR FP Sbjct: 143 DEAHERSLNIDFILGYLRALLPK-RPDLKVIITSATIDVDRFSQHFDNAPVIEVSGRLFP 201 Query: 183 VERRYLPLP--AHQRFDDAVAVATAEMLRQE---SGSLLLFLPGVGEIQRVQEQLASRIG 237 VE YL A +D + A ++ ++ G +L+FLPG EI+ + +L Sbjct: 202 VEVLYLGDSDGAEDGVEDQIVRAVDGIVAEDFGPRGDVLIFLPGEREIRDLSRRLKGDER 261 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +L PLY LS +Q + P GMR VVLATN+AETSLT+ GIR V+D RV+R Sbjct: 262 RQIL--PLYARLSAAEQNRVFKPTGSGMR-VVLATNVAETSLTVPGIRYVIDPGTARVSR 318 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + RT L RL +R+SQ+S QR GR GR+ G+ L L +++ ++PEIL+++L Sbjct: 319 YSHRTRLQRLPVERISQSSADQRKGRCGRVAAGVCLRLYSEQDFLARPQFTDPEILRTNL 378 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGN 416 + +++++L+ G D + ++D P + +RLL+ LGA+ +L++ G+KMA L Sbjct: 379 AAVVLKMLELGLGDVQKFPFVDPPEGKMVRDGQRLLEELGAISARGKLTSLGRKMARLPV 438 Query: 417 DPRLAAMLVSA 427 DP+LA M+ +A Sbjct: 439 DPKLARMVHAA 449 >UniRef50_B1VE65 Putative ATP-dependent helicase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VE65_CORU7 Length = 871 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 277/890 (31%), Positives = 414/890 (46%), Gaps = 125/890 (14%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI---NGKIILLEPRRLA 60 LP +A LL+AL ++ AP G GK+T P Q LA + + ++I+ +PRR+A Sbjct: 9 LPFSAGRTSLLSALAEFGAAVVHAPPGTGKTTLAP-QFLADADLVAPDQRVIVTQPRRVA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+ A RLAEL + G VGY +R + V TR+E+VT GVL R + RDP+L GVG + Sbjct: 68 ARSAAARLAELRGTELGQEVGYTVRGDSRVSKQTRIEMVTPGVLLRRMLRDPDLPGVGAI 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML--PEAPVVISEG 178 ++DE HER +++DL A+ +++ LRDDL +L MSAT+D R +L PEA VV Sbjct: 128 VVDEVHERHIESDLVFAIAAQLRE-LRDDLLILAMSATVDAQRFANLLGVPEA-VVHVPA 185 Query: 179 RSFPVERRYLPLP---AHQRFDD------AVAVATAEMLRQE-----SGSLLLFLPGVGE 224 +P+E Y H+R D ++ A +R+ G +L F+P + Sbjct: 186 PIYPLEIHYAAAADSITHRRSDSRPGQPGSIEAFIAAGVRRALADTAEGDILAFVPTI-- 243 Query: 225 IQRVQEQLASRIGSDVLLC-PLYGALSLNDQRKAILP----APQGMRKVVLATNIAETSL 279 R E LA + S L L+G LS Q + + P + R+V+ AT++AE+S+ Sbjct: 244 --RGTELLAQQFDSPGLAAFALHGQLSPKQQSEIVNPRGATSANPTRRVIFATDVAESSI 301 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 T+ G+R+VVD RV+R D G++ L+T+ +QAS QRAGRAGR PG LI+ + Sbjct: 302 TVPGVRVVVDTCLSRVSRRDSSRGMSVLVTESAAQASCVQRAGRAGREGPGTVFRLISAD 361 Query: 340 QAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL 399 + R + P I SDL+G L+++ WG ++ D P N AA L+ LGAL Sbjct: 362 EWARLPEFAAPAIQTSDLTGALLDVAAWGAPMGEGLALPDPLPQNNAAAAAATLRQLGAL 421 Query: 400 EGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAF 458 + + ++ G+ + L DPR A + A A++ L+ VA Sbjct: 422 DADGTITELGELLVTLPLDPRHARGGLLASRRVPVELVARVLQFLD-----------VAS 470 Query: 459 SRNQPAWQQRS--------QQLLKRLNVRGGE------ADSSLIAPLLAGAFADRIARR- 503 S+ PA R ++L++ L IA +A A D +ARR Sbjct: 471 SQRAPAGAIRDISPKDPAVRRLVRLLQPHAPRELSDPLTGEDAIAYTIACARPDLLARRV 530 Query: 504 RGQDGRYQLANGMGAMLDAN----DALSRHEWL-IAPLLLQGSASP----DARILLALLV 554 R G GA++ + DA +W +A + SAS IL + + Sbjct: 531 EPGSERVLTVGGTGAVIPKSMPGVDAPHNEQWFAVADIGRSESASARKSGTGSILRSAMP 590 Query: 555 DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLN 614 +EL VQ+ T + + ++A R +G + + P AKPS E QA+ Sbjct: 591 ISEELALAAAGGVQKERTASYSLEKKRVQARERTIVGAIELSSAP-AKPSAAEAEQAVSA 649 Query: 615 GIRDKGL----SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDES----LLAALETWLL 666 I +L ++ A +L R+ ++L + + S L A L LL Sbjct: 650 AIAQASPEQLEEMLQLSSNARELVKRM----QYLHDAAVAGFERASGYPDLRAGLPAELL 705 Query: 667 PHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHE----- 721 + + + D+ LRGL+ W Q +D P +P+G + Y E Sbjct: 706 SFIAA--DIAAGRRPDVASLLRGLIPW--DQPIDELAPESLELPSGRTRRLTYPEVLIGS 761 Query: 722 ---------------DNPPA-------------------LAVRMQEMFGEATNPTIAQGR 747 D P LA ++Q+ FG +P IA R Sbjct: 762 SAAGAVSDAASVAPGDVVPGSSGEGQAAPAAEPHAEPVVLATKLQDAFGLTESPRIAGRR 821 Query: 748 VPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 V LLSPAQRP+ +T DL FW G Y+ V+K+M+GRYPKH WP DPA Sbjct: 822 V--QFHLLSPAQRPVAVTDDLGSFWAGPYQGVRKDMRGRYPKHAWPQDPA 869 >UniRef50_D0WKL4 ATP-dependent helicase HrpA n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WKL4_9ACTO Length = 1331 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 178/499 (35%), Positives = 272/499 (54%), Gaps = 35/499 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV+A E+ A+ V+++ TG+GK+T LP + L G + I +PRR+AAR Sbjct: 16 LPVSARRDEIARAIRDNQVVVVAGETGSGKTTQLPKICLELGRGTSAMIGHTQPRRIAAR 75 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA RLA L G VGY++R V P T ++++T+G+L IQ DPEL+ +I+ Sbjct: 76 AVADRLAHELGVDLGAQVGYQVRFTEEVSPGTLVKLMTDGILLAEIQSDPELARYDTIII 135 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L + R DLK++I SAT+D R + APVV GR++P Sbjct: 136 DEAHERSLNIDFLLGYLARLLP-RRPDLKVIITSATIDTQRFAKHF-NAPVVEVSGRTYP 193 Query: 183 VERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 VE RY PL + + A E++ + G +L+FL G GEI+ Q A +G Sbjct: 194 VEIRYRPLVGDDGGEATDQVSGIVEACEELMAEGPGDILVFLSGEGEIRDAQAAFADELG 253 Query: 238 -------------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 V + PLY LS +Q + P R+++LATNIAETSLT+ GI Sbjct: 254 RRHIEPGGRSSVPDAVEVLPLYSRLSAAEQHRIFERRPH--RRIILATNIAETSLTVPGI 311 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 R VVD R++R+ RT + RL + +SQAS QRAGR+GR+ GI + L ++E + Sbjct: 312 RYVVDPGTARISRYSARTKVQRLPIEPISQASANQRAGRSGRVADGICIRLYSQEDFDGR 371 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERL 404 ++PEI ++ L+ +++++L G + A ++D P + A +LL +GA++G RL Sbjct: 372 EKFTQPEIQRTSLASVILQMLALGLGNVADFPFIDPPEERAVRAGAQLLTEIGAIDGARL 431 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPA 464 + G+++A L DPRL ML+ A D+ A+++ ++ + L V R +PA Sbjct: 432 TPVGRRLARLPIDPRLGRMLLEA---DKNGCASEVLVLV--------AALSVQDVRERPA 480 Query: 465 WQQ-RSQQLLKRLNVRGGE 482 ++ ++ QL R R + Sbjct: 481 EKRPQADQLHARFTARSSD 499 >UniRef50_Q55CD3 DEAD/DEAH box helicase n=2 Tax=Eukaryota RepID=Q55CD3_DICDI Length = 730 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 160/448 (35%), Positives = 244/448 (54%), Gaps = 24/448 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 SLPV LL V++ + TG GK+T +P Q L G NG I + +PRR+A Sbjct: 72 SLPVFTAKDALLKNFKEHSTVIIISETGTGKTTQIP-QYLYENGYKDNGIIAITQPRRVA 130 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A ++++R+++ + + GD VGY +R + T+L+ +T+G+L R D LS ++ Sbjct: 131 AVSISKRVSQEMGVELGDQVGYCVRFDDKTNEKTKLKYMTDGMLVREAMLDSSLSKYSVI 190 Query: 121 ILDEFHERSLQADLALALLLDVQQ--GLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 ILDE HER+L D+ LL +Q+ ++ LK++IMSATLD + Q APV+ EG Sbjct: 191 ILDEAHERTLNTDVLFGLLKSIQKRREKKNPLKIIIMSATLDAELFSQYFNNAPVLYIEG 250 Query: 179 RSFPVERRYLPLPAHQRFDDA--------VAVATAEMLRQES----GSLLLFLPGVGEIQ 226 R FPV+ Y D A +A T + + +E G +L+FL G EI+ Sbjct: 251 RQFPVQIYYTEEIQKDYVDAALITVLQIHIAHLTDKSINKEEEEDGGDILVFLTGRDEIE 310 Query: 227 RVQEQLASRI------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 +++ L RI D+++CP++ AL Q K AP+G RKV+LATNIAETSLT Sbjct: 311 NLEKLLLDRIPRLPVGSKDLIVCPIFSALPQEQQMKVFEKAPKGSRKVILATNIAETSLT 370 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 I GIR VVD + F+P+ G+ L +S+AS QR GRAGR G L +E Sbjct: 371 INGIRYVVDSGAVKSKIFNPKIGIDSLNIIPISKASAKQRTGRAGREFEGKCYRLYTQET 430 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL- 399 E+ S PEI +S+++ ++++L G +D +L+ PPV +++ + LL L A+ Sbjct: 431 FEKLDTSSIPEIKRSNIANVILQLKTIGINDILSFDFLESPPVASVIKSLELLFCLDAIS 490 Query: 400 EGERLSAQGQKMAALGNDPRLAAMLVSA 427 + L+ G+KMA DP + L+ + Sbjct: 491 DNGSLTELGKKMALFPLDPMYSKTLIKS 518 >UniRef50_D1N0X8 ATP-dependent helicase HrpA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0X8_9BACT Length = 1235 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 158/430 (36%), Positives = 247/430 (57%), Gaps = 8/430 (1%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP++ + E+ A + +P +++ TG+GK+T LP LA G G+I +PRR+AA Sbjct: 25 LPISRHVDEIKKAWESSPVIIVGGDTGSGKTTQLPKIALALGYGRRGRIGCTQPRRIAAS 84 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +++R+A+ L +PG VGY++R + +T L+ +T+G+L + D L ++I+ Sbjct: 85 AMSRRVAQELGCEPGTGVGYQVRFDDRTTKSTVLKFMTDGILLAETRNDRSLRQYEVLII 144 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L ++ R DLK+ I SATLD + +APV+ EGR++P Sbjct: 145 DEAHERSLNIDFLLGYLKNLLPH-RPDLKVAISSATLDTQEFSRFFNDAPVIAIEGRTYP 203 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQ--ESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 VE ++P + +A A AE + G +L+FLPG EI+ + L R + Sbjct: 204 VEDVFMPPEYDEELSAQIARA-AEFVTSLDPQGDILVFLPGEREIRDATDVLTGRRLRNT 262 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LS DQ+K P G R++VLATN+AETS+TI IR V+D R+ RF+P Sbjct: 263 EVLPLFGRLSAADQQKVFNPG--GQRRIVLATNVAETSVTIPRIRFVIDSGLARIKRFNP 320 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RT + L + +SQAS QR GR GR+ G+ +HL ++E ER+A ++PEI ++ L+G+ Sbjct: 321 RTQIEELQVESISQASARQRRGRCGRIADGVCVHLYSEEDLERSAPYTDPEIKRTGLAGV 380 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPR 419 ++++ G +++ PP + R L+ L AL+ RL+ +G K+A L DP Sbjct: 381 ILQMAALGLPRITHFPFINPPPPAAVREGLRTLEDLRALDPAGRLTREGWKLAELPIDPH 440 Query: 420 LAAMLVSAKN 429 L ML A+ Sbjct: 441 LGKMLAFAEK 450 >UniRef50_C8N990 ATP-dependent helicase HrpA n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N990_9GAMM Length = 1310 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 163/430 (37%), Positives = 245/430 (56%), Gaps = 5/430 (1%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV A ++L + V++S TG+GK+T LP LA G G I +PRR+A Sbjct: 76 ADLPVLAAKNDILRLIREHQVVIISGETGSGKTTQLPQLCLALGLGARGTIAHTQPRRIA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE L+ GD VGY++R T ++++T+G+L DP L+ ++ Sbjct: 136 ARSVAARIAEELDTPLGDAVGYQVRFDEKTSDATVIKLMTDGMLLAETLSDPYLAQYEVI 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D ++ APV+ GR+ Sbjct: 196 IVDEAHERSLNIDFLLGYLHRLA-ARRPDLKIIITSATIDAEKFAAHFGGAPVLNVSGRT 254 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE RY P + DA+ A AE+ + +L+FLP +I+ ++L D Sbjct: 255 YPVEIRYRPPGEDEDTADAILRAVAELDQHGRNDILVFLPSERDIREAADRLRREQLRDT 314 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LSL DQ+ PQ R++VLATN+AETSLT+ I+ V+D R++R+ Sbjct: 315 DVLPLFGRLSLADQQAVF--RPQAPRRIVLATNVAETSLTVPRIKAVIDTGTARISRYSL 372 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RT RL + +SQA+ QRAGR GR+ GI + L ++E + A +EPEIL+++L+ + Sbjct: 373 RTKTQRLPIEPISQAAANQRAGRCGRVSSGICIRLYSEEDYAQRPAYTEPEILRTNLAAI 432 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGNDPR 419 ++++L D A ++D P + RLL L A E RL+ G+ MA L DPR Sbjct: 433 ILQMLVLKLGDIAAFPFVDAPDERQINDGYRLLYELQATDEARRLTPLGRHMARLPVDPR 492 Query: 420 LAAMLVSAKN 429 A +LV+A+ Sbjct: 493 FARILVAAEK 502 >UniRef50_B7VPK9 ATP-dependent helicase n=201 Tax=Bacteria RepID=B7VPK9_VIBSL Length = 1355 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 164/474 (34%), Positives = 268/474 (56%), Gaps = 29/474 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILL---EPRRLA 60 LPV+ ++ A+ V+++ TG+GK+T LP ++ + G G+ L+ +PRRLA Sbjct: 125 LPVSQKRDDIAKAIAENQVVIVAGETGSGKTTQLP-KICSELG-RGRFGLIGHTQPRRLA 182 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE + + G+ VGY++R + + NT+++++T+G+L IQ D LS + Sbjct: 183 ARSVANRIAEEMETQLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFLSQYDTI 242 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D + L ++ R DLK++I SAT+D +R + AP++ GR+ Sbjct: 243 IIDEAHERSLNIDFIMGYLRELLPK-RPDLKVIITSATIDPERFSKHFNNAPIIEVSGRT 301 Query: 181 FPVERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +PV+ RY PL + + A E+ + G +L+F+ G EI+ + L+ R Sbjct: 302 YPVDTRYRPLGGDDSDSDRDQIEGIFEAVDELCDEGQGDILIFMNGEREIRDTADSLSKR 361 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 D + PLY LS +Q + I + G R++VLATN+AETSLT+ GI+ V+D R+ Sbjct: 362 NLRDTEIVPLYARLSAGEQNR-IFQSHTG-RRIVLATNVAETSLTVPGIKYVIDPGTARI 419 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +R+ RT + RL + VSQAS QR GR GR+ GI + L ++E E ++PEIL++ Sbjct: 420 SRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAEGICIRLYSEEDFESRPEFTDPEILRT 479 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL---------------E 400 +L+ +++++ G D +++ P N+ RLL+ LGA+ + Sbjct: 480 NLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLLEELGAIAIVEPSANKNKNHGDD 539 Query: 401 GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSD 453 ++L+A G+K+A L DPRLA M++ A ++ IA+ L + PR SD Sbjct: 540 KKKLTAIGRKLAKLPIDPRLARMVIEAPSNRCLHEVMVIASALSIQDPRERPSD 593 >UniRef50_D2R0M6 ATP-dependent helicase HrpA n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0M6_9PLAN Length = 1341 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 177/490 (36%), Positives = 266/490 (54%), Gaps = 18/490 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 SLP+ A E++ A++ P V++ TG+GKST LP L GI G I +PRR+AA Sbjct: 72 SLPITAAKDEIIAAIEAHPVVVVCGETGSGKSTQLPKFCLEMGRGIRGWIGHTQPRRIAA 131 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+++ RL E L + VG+++R + T ++V+T+GVL Q D L +I Sbjct: 132 RSISARLTEELGSQGSKQVGFKVRFHDSTDDRTLVKVMTDGVLLAETQTDRFLDQYDTLI 191 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----APVVISE 177 +DE HERSL D L L + R+DL+L+I SAT+D +R+ AP+V Sbjct: 192 IDEAHERSLNIDFLLGYLHRLLYK-RNDLRLIITSATIDAERIAAHFNHTGSPAPIVQVS 250 Query: 178 GRSFPVERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 GRS+PVE R+ P PA ++ + AVA +T +LR+ G +L+FLP +I+ + L Sbjct: 251 GRSYPVEIRHEP-PAEEQLEGAELITAVADSTERLLRETRGDILVFLPTERDIRIAHQVL 309 Query: 233 ASRIGSD--VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 R+ S + + PLY LSL DQ+K A R++VLATN+AE+S+T+ I VVD Sbjct: 310 RGRVASSGAIDILPLYARLSLADQQKVF--AAHAKRRIVLATNVAESSVTVPAITAVVDT 367 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 R++R+ PR+ + RL +R+SQAS QRAGR GR+ PGI + L +E + + P Sbjct: 368 GTARISRYSPRSKVQRLPIERISQASANQRAGRCGRIAPGICVRLFGEEDFQSRDPFTSP 427 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQ 409 EI +++L+ +L++ L + LD P + + L L A++ +R L+ G Sbjct: 428 EIQRTNLAAVLLQSLALDLGPLEEFPLLDVPRSEAIRDGFKTLFELQAIDDKRELTPLGL 487 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQR 468 K+A L DP +A ML++A + A IAA LE + PR SD S W Sbjct: 488 KLARLPVDPSIARMLLAASAEHALADVLIIAAALEVQDPRDRPSDKAQEASAAHAQWSDP 547 Query: 469 SQQLLKRLNV 478 L L++ Sbjct: 548 DSDFLSWLHL 557 >UniRef50_A8XFV1 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8XFV1_CAEBR Length = 859 Score = 256 bits (653), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 178/543 (32%), Positives = 272/543 (50%), Gaps = 42/543 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLAA 61 LP+ V +L+ L +++ TG+GKST +P QL GI G I + EPRR+AA Sbjct: 158 LPIDVVEQQLMHELASQETLIVIGETGSGKSTQVP-QLCVRAGIAEKGLIAVTEPRRVAA 216 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+A + G TVGY +R +N T++E +T+G++ R P L VI Sbjct: 217 VSLASRVAVEMGTDLGGTVGYHVRFENVTSHRTKIEYMTDGIVLRKALVSPLLDKYSTVI 276 Query: 122 LDEFHERSLQADLALALLLDVQQGLR---DDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 +DE HERSL +D+ + +L Q R + L+L+IMSATL D+ Q A VV+ G Sbjct: 277 IDEAHERSLHSDVLMCILRKCQAQRRSTDNPLRLIIMSATLQADKFQAYFDNAKVVLVSG 336 Query: 179 RSFPVERRYLPLPAHQRF-------DDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 R+FP+E ++ ++ F + + V + + +L+FL G EI+ V Q Sbjct: 337 RTFPIEIHHVNPKINKSFSATDYVYNTVICVKHVHLTEPKGHDILVFLTGSEEIEAVAHQ 396 Query: 232 LASRIGS-----DVLL-CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 LA GS D +L PLY AL QR+A PQG RKV+++TNIAETS+TI GIR Sbjct: 397 LAELNGSLPREADFILPVPLYAALRPEKQREAFQKTPQGARKVIISTNIAETSVTIPGIR 456 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 +V+D + + RF+ + L VS+A QRAGRAGR PG L +E ++ Sbjct: 457 VVIDSGKVKTKRFEASNRIDVLKVHNVSKAQAKQRAGRAGRDAPGKCYRLYTREDFQKFD 516 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA---LEGE 402 A++ PEIL+ +LS +EL++ G +P ++ W+D P N+ AA L LGA + + Sbjct: 517 AENMPEILRCNLSATFLELMKLGMKNPHRLGWIDPPESQNIDAALLELTSLGAIRPINSD 576 Query: 403 R----LSAQGQKMAALGNDP------RLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GN 451 R L+ G P ++ +L A+ + A KI A ++ G Sbjct: 577 RSKFVLTEMGDVFCMYPLSPEHARKLKVFRILFQAQKEGCIMEAIKIVAAMQTDALFSGG 636 Query: 452 SDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ 511 SD +++ ++ R G+ + L L F D++ + D RY Sbjct: 637 SD---------SKSDAEVERVRRKFETREGDHITLLKIVLTTNDFFDQLNAKTEADARYN 687 Query: 512 LAN 514 +N Sbjct: 688 KSN 690 >UniRef50_C4QEZ9 ATP-dependent RNA Helicase, putative n=21 Tax=Eukaryota RepID=C4QEZ9_SCHMA Length = 1569 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 162/434 (37%), Positives = 248/434 (57%), Gaps = 14/434 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 +LP+ + EL+ A++ +++ TG+GK+T + Q LA G G+I +PRR+A Sbjct: 907 ALPIFRLKDELMKAVNDNKVLIVIGETGSGKTTQI-TQYLAEAGYVNTGRIGCTQPRRVA 965 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E + G VGY +R ++C P T+++ +T+G+L R DP+L ++ Sbjct: 966 AMSVAKRVSEEFGCRLGQEVGYTIRFEDCTAPETKIKYMTDGMLLRECLIDPDLRQYSVI 1025 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL Q RDD+KL++ SATLD+ + Q EAP+ GR+ Sbjct: 1026 MLDEAHERTIHTDVLFGLLKKAIQK-RDDMKLIVTSATLDSVKFSQYFFEAPIFTIPGRT 1084 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR---IG 237 +PVE Y P + D A+ L + G +L+FL G EI E L R +G Sbjct: 1085 YPVEILYSLEPENDYLDAALNTVMQIHLTEPPGDILVFLTGQEEIDSGCELLYERMKALG 1144 Query: 238 SDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 S+V ++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI V+D + Sbjct: 1145 SEVPELIILPVYAALPSEMQSRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFVK 1204 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA--AQSEPEI 352 + ++G+ +LI +SQA QRAGRAGR PG L E+A R A + PEI Sbjct: 1205 QKVYSSKSGMDQLIVTPISQAQAKQRAGRAGRTGPGKCYRLYT-ERAYRDEMLATNVPEI 1263 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQ-GQKM 411 +++L+ +++L G +D ++D PP+ L+AA L L AL+ E L + G++M Sbjct: 1264 QRTNLASTVLQLKAMGINDLLSFDFMDPPPLQTLVAAMETLHGLSALDDEGLLTRLGRRM 1323 Query: 412 AALGNDPRLAAMLV 425 A +P L+ ML+ Sbjct: 1324 AEFPLEPMLSKMLI 1337 >UniRef50_UPI00016C44CB ATP-dependent helicase HrpB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44CB Length = 882 Score = 255 bits (651), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 173/428 (40%), Positives = 247/428 (57%), Gaps = 6/428 (1%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLAA 61 LP+ LPELL AL + +L APTGAGK+T +P L+ G+ NG +++LEPRR+AA Sbjct: 6 LPIDDALPELLAALRASGAAVLRAPTGAGKTTRVPPALI-DSGLAGNGLVLMLEPRRVAA 64 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R A+R+A N GDT GY++R TR+ VVT GVL R + DP L GV V+ Sbjct: 65 RAAARRMALEDNSPLGDTFGYQVRFDKKSSARTRVLVVTPGVLLRRLHDDPFLDGVAGVV 124 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 DEFHER L+ADLA + +++ +R +L +++MSAT+D + L PVV S+GR+F Sbjct: 125 FDEFHERGLEADLAFGMARLIRENVRPELNVVVMSATVDPSAVSAYLGGCPVVDSQGRTF 184 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-GSDV 240 PVE RY + AVA A ++L +SG +L FLPG+ EI++ ++L S S Sbjct: 185 PVEVRYRARRSDTPVHTAVADAVRDLLGTQSGDVLAFLPGLREIRQTADELDSFARESGA 244 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L+ PL+G L Q +A+ + RKVVLATN+AETS+T++G+ VVD RV F+P Sbjct: 245 LVLPLHGDLPPEQQDRALQKLDR--RKVVLATNVAETSVTVDGVTAVVDSGLARVMEFEP 302 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 G+ RL +++AS QR GRAGR PG+ + L + Q+ PEI + DL G Sbjct: 303 SVGMDRLRLVPIARASADQRTGRAGRTAPGVCVRLWDEPGHRARPEQAAPEIKRVDLCGA 362 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 +++L G D + WLD P + + +LL LG L+ G+ A L PRL Sbjct: 363 VLQLAALGEPDVRKFPWLDAPTEEAVEQSLKLLDQLGLFVNGALTPLGEIAAGLPVHPRL 422 Query: 421 AAMLVSAK 428 +L+ + Sbjct: 423 GRLLLEGQ 430 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/178 (42%), Positives = 101/178 (56%), Gaps = 4/178 (2%) Query: 630 AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 A R R+ C +W+PE D PA + L ALE L + + +R LD LRG Sbjct: 706 AGAFRTRVRCLREWVPELDLPAFEAADLREALEA-LCRNRRSLADVRNGPWLDF---LRG 761 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 L + Q ++SE P H VP+GS I + Y E PP LA R+QEMFG PT+ +GR Sbjct: 762 CLTYQQLQAVESEAPGHLEVPSGSHIQLVYEEGRPPILAARIQEMFGLTETPTVGRGRRK 821 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 ++L LL+P RP Q+T DL+ FW+ Y V+KE++ RYPKH WPDDP R K+ Sbjct: 822 VLLHLLAPNYRPQQVTEDLASFWRNGYPIVRKELRARYPKHSWPDDPLTAEAVRGAKR 879 >UniRef50_Q0A864 ATP-dependent helicase HrpA n=9 Tax=Gammaproteobacteria RepID=Q0A864_ALHEH Length = 1341 Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 167/449 (37%), Positives = 257/449 (57%), Gaps = 10/449 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLPV L +L A+ V++ TG+GKST +P +A G++G I +PRRLAA Sbjct: 82 SLPVNQRLDDLREAIRDHQVVVICGATGSGKSTQIPKICMALGRGVHGWIGHTQPRRLAA 141 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R +AQR+++ L G+ VGY++R + V T L+++T+G+L IQRD L +I Sbjct: 142 RTLAQRISDELGTALGEAVGYKVRFTDQVSERTHLKLLTDGMLLAEIQRDRHLDAYDTLI 201 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R + EAP++ GR++ Sbjct: 202 IDEAHERSLNIDFILGYLKRLLP-RRPDLKVIITSATIDPERFSKHFDEAPILEVSGRTY 260 Query: 182 PVERRYLPL-----PAHQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQLASR 235 PVE RY P+ + AV A E+ R+ G +L+FL G EI+ E L + Sbjct: 261 PVEVRYRPMVDDEDERDEDLPGAVVEAVHELAREPGQGDVLVFLSGEREIRECTEALRKK 320 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + PLY LS +Q++ P G R+VVLATN+AETS+T+ GIR VVD R+ Sbjct: 321 HPPHTEVLPLYARLSAAEQQRVFNPK-GGGRRVVLATNVAETSVTVPGIRYVVDSGYARI 379 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 R+ RT ++RL + +SQAS QRAGR GR PG+++ L ++E +A ++PEI ++ Sbjct: 380 NRYSYRTKVSRLPIEPISQASANQRAGRCGREAPGVAIRLYSEEDFAGRSAFTDPEIQRT 439 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAAL 414 +L+ +++++ G D + +++ P + +LL LGA+ +R L+A G+++A L Sbjct: 440 NLAAVILQMKALGLGDIQRFPFVEPPEHKFVNDGFKLLHELGAVTEDRELTALGRQLARL 499 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 DP + ML++A+ IAA L Sbjct: 500 PLDPPVGRMLLAAREQGVLDEVLVIAAAL 528 >UniRef50_Q54MH3 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=5 Tax=Eukaryota RepID=DHX16_DICDI Length = 1106 Score = 254 bits (650), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 162/451 (35%), Positives = 244/451 (54%), Gaps = 12/451 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 SLPV +L+ A+ +++ TG+GK+T +P Q L G + GKI +PRR+A Sbjct: 466 SLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIP-QYLHEAGFSKTGKIGCTQPRRVA 524 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+AE + K G+ VGY +R ++C T L+ +T+G+L R P+L+ ++ Sbjct: 525 AMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVL 584 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ LL D+ + R DLKLLI SAT+D +R AP GR Sbjct: 585 IIDEAHERTLHTDILFGLLKDITR-FRPDLKLLISSATMDAERFSDYFDGAPTFNIPGRK 643 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR---IG 237 + V Y P D AV + + G +L+FL G E+ + E L +R +G Sbjct: 644 YEVTTHYTQAPEADYLDAAVVTVLQIHITEPLGDILVFLTGQEEVDQAAEMLQTRTRGLG 703 Query: 238 SDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + + ++ +Y L + Q K P P RKVVLATNIAETSLTI+GI V+D + Sbjct: 704 TKIKELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCK 763 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEIL 353 F+PRTG+ L+ VS+AS QR GRAGR+ PG L + ++ PEI Sbjct: 764 QKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTIPEIQ 823 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 +++L +++ L G +D ++D PP L+AA L LGAL +L+ G+KMA Sbjct: 824 RTNLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLGRKMA 883 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 DP+L+ M+++++ + I A+L Sbjct: 884 EFPVDPQLSKMIIASEKYKCSEEILTICAML 914 >UniRef50_C0SAG2 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 n=2 Tax=Eukaryota RepID=C0SAG2_PARBP Length = 1093 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 158/436 (36%), Positives = 239/436 (54%), Gaps = 13/436 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING---KIILLEPRRL 59 SLP+ E++ A+ +++ TG+GK+T +P Q L G KI +PRR+ Sbjct: 444 SLPIYRFREEIIQAVADHQIIIIVGETGSGKTTQIP-QYLHEAGYTKGGMKIGCTQPRRV 502 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA R+AE + K G+ VGY +R ++ T L+ +T+G+L R + +P+L + Sbjct: 503 AAMSVAARVAEEMGVKVGNEVGYAIRFEDATSDKTVLKYMTDGMLLRELLTEPDLGAYSV 562 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER++ D+A LL D+ + R DLKLLI SAT+D + Q+ +AP+ GR Sbjct: 563 LMIDEAHERTVSTDIACGLLKDIAKA-RPDLKLLISSATIDAQKFQKYFDDAPIFNIPGR 621 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL---ASRI 236 +PV+ Y P A+ + Q G +L+FL G EI+ ++ + A ++ Sbjct: 622 RYPVDIHYTLQPEANYLAAAITTVFHIHISQGKGDILVFLTGQEEIEAAEQSIQETARKL 681 Query: 237 GSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 GS + ++CP+Y L Q K P P G RKVVLATNIAETSLTI+GI V+D Sbjct: 682 GSKIPELIICPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIVYVIDPGFV 741 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEPEI 352 + F+PRTG+ L+ S+AS QRAGRAGR+ PG L K + PEI Sbjct: 742 KENVFNPRTGMESLVVTPCSRASAGQRAGRAGRVGPGKCFRLYTKWAYYNELEENTTPEI 801 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 +++L+G+++ L G ++D PP L+ A L LGAL L+ G++M Sbjct: 802 QRTNLNGVVLMLKSLGIDQLLDFDFMDPPPAETLIRALEQLYALGALNDHGDLTKVGRQM 861 Query: 412 AALGNDPRLAAMLVSA 427 A DP LA +++A Sbjct: 862 AEFPTDPMLAKAILAA 877 >UniRef50_B9ZMZ4 ATP-dependent helicase HrpA n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMZ4_9GAMM Length = 1307 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 161/458 (35%), Positives = 256/458 (55%), Gaps = 21/458 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LP+ A ++ A+ P ++L TG+GK+T LP L L A G G I +PRR+AAR Sbjct: 78 LPIHAERERIVAAIREHPVLVLCGETGSGKTTQLPKLCLEAGRGETGLIGHTQPRRIAAR 137 Query: 63 NVAQRLAELLNEKPG----DTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +VA R+AE L G TVG+++R + GPN ++++T+G+L + DPEL Sbjct: 138 SVASRIAEELGTTLGGDRNSTVGFKVRFSDQTGPNNWVKLMTDGMLLAELAHDPELRAYD 197 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 +I+DE HERSL D + +L + + R +L+++I SATLD +RL +AP++ G Sbjct: 198 TLIVDEAHERSLNIDFLMGVLKRLSKK-RPELRIIITSATLDPERLSAFFDDAPILTVAG 256 Query: 179 RSFPVERRYLPLP------------AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQ 226 R++PVE RY P+ + D + A AE R G +L+FLPG EI+ Sbjct: 257 RTYPVELRYRPIEPEDADEDNSTERGERDLFDGIRDAVAECERAGPGDILVFLPGEREIR 316 Query: 227 RVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 286 + L ++ +D + LY LS +Q + R++VLATN+AET+LT+ GIR Sbjct: 317 DAHKALRGQVRADTEVLALYARLSAREQARVF--QSHSGRRIVLATNVAETALTVPGIRF 374 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 V+D R++R+ R+ + RL + +SQA+ QRAGR GRL PGI + L +++ Sbjct: 375 VIDSGLARISRYSWRSRVQRLSLEPISQAACDQRAGRCGRLGPGICIRLFSEDDYNLRPP 434 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLS 405 ++PEI +S+L+ +++++ P Q ++D P + RLL+ LGA++ R + Sbjct: 435 FTDPEIQRSNLASVILQMAALKLGQPRQFPFVDPPDPRLVKDGYRLLEELGAVDTRGRTT 494 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 +G+++A + DPR AML++ + A IAA L Sbjct: 495 PRGRQLARMPIDPRHGAMLLAGADHGCVTETATIAAFL 532 >UniRef50_P45018 ATP-dependent RNA helicase hrpA homolog n=53 Tax=Bacteria RepID=HRPA_HAEIN Length = 1304 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 157/438 (35%), Positives = 248/438 (56%), Gaps = 13/438 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 SLPV+ E+ + ++++ TG+GK+T LP L N G I +PRR+AA Sbjct: 82 SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE L + G VGY++R + + NT+++++T+G+L IQ D L+ +I Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSCLI 201 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLKL+I SAT+D +R + AP++ GR++ Sbjct: 202 IDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTY 261 Query: 182 PVERRYLPLPAHQRFDDAVAVATA--EMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE RY P+ D + A E+ + G +L+F+ G EI+ E L + Sbjct: 262 PVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDILIFMNGEREIRDTAEALQKQNLKH 321 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + PL+ LS +Q K P+ G+ ++VLATN+AETSLT+ I+ V+D R++R+ Sbjct: 322 TEILPLFARLSAQEQNKIFHPS--GLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYS 379 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 RT + RL + +SQAS QR GR GR+ GI + L ++E ++PEIL+++L+ Sbjct: 380 YRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLAS 439 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE------GER--LSAQGQKM 411 +++++ G D ++D P ++ +LL+ LGA E GE+ L+ G+++ Sbjct: 440 VILQMTALGLDDIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQL 499 Query: 412 AALGNDPRLAAMLVSAKN 429 A L DPRLA M++SA N Sbjct: 500 AQLPVDPRLAKMILSAVN 517 >UniRef50_O45244 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 n=4 Tax=Chromadorea RepID=DHX16_CAEEL Length = 1008 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 169/457 (36%), Positives = 247/457 (54%), Gaps = 22/457 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKII-LLEPRRL 59 SLPV A + A+ +++ TG+GK+T LP Q L G GK I +PRR+ Sbjct: 363 SLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLP-QYLYEAGFCEGGKRIGCTQPRRV 421 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA R+A+ + K G VGY +R ++C T L+ +T+G+L R +P+L+ + Sbjct: 422 AAMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLKYMTDGMLLREFLNEPDLASYSV 481 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER+L D+ L+ D+ + R DLKLLI SATLD ++ +AP+ GR Sbjct: 482 MMIDEAHERTLHTDILFGLVKDIAR-FRKDLKLLISSATLDAEKFSSFFDDAPIFRIPGR 540 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASR--- 235 FPV+ Y P D A+ L Q G +L+FL G EI+ VQE L R Sbjct: 541 RFPVDIYYTQAPEADYVDAAIVTIMQIHLTQPLPGDILVFLTGQEEIETVQEALMERSKA 600 Query: 236 IGSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +GS + + P+Y L + Q K P P+ RKVVLATNIAETS+TI+GI V+D Sbjct: 601 LGSKIKELIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAETSVTIDGINYVIDPGF 660 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA----KEQAERAAAQS 348 + FD R+G+ L +S+A+ QRAGRAGR PG L K + E Q Sbjct: 661 SKQNSFDARSGVEHLHVVTISKAAANQRAGRAGRTGPGKCFRLYTAWAYKHELEE---QP 717 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSA 406 PEI +++L +++ L G D +LD PP L+ A L LGAL GE L+ Sbjct: 718 IPEIQRTNLGNVVLMLKSLGIHDLVHFDFLDPPPQETLVIALEQLYALGALNHRGE-LTK 776 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 G++MA DP ++ M+++++ + + IAA+L Sbjct: 777 LGRRMAEFPCDPCMSKMIIASEKYECSEEIVTIAAML 813 >UniRef50_O60231 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=75 Tax=Eukaryota RepID=DHX16_HUMAN Length = 1041 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 166/452 (36%), Positives = 240/452 (53%), Gaps = 13/452 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV ELL A+ +++ TG+GK+T +P L N KI +PRR+A Sbjct: 398 SLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVA 457 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A + K G+ VGY +R ++C T L +T+G+L R +P+L+ +V Sbjct: 458 AMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVV 517 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER+L D+ L+ DV + R +LK+L+ SAT+D R +APV GR Sbjct: 518 MVDEAHERTLHTDILFGLIKDVAR-FRPELKVLVASATMDTARFSTFFDDAPVFRIPGRR 576 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL---ASRIG 237 FPV+ Y P + V + Q G +L+FL G EI+ E L R+G Sbjct: 577 FPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLG 636 Query: 238 SDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 S + L+ P+Y L + Q + P P G RKVV+ATNIAETSLTIEGI V+D + Sbjct: 637 SKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCK 696 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEIL 353 ++PRTG+ L S+AS QRAGRAGR+ G L + ++ PEI Sbjct: 697 QKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 756 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSAQGQKM 411 ++ L +++ L G D +LD PP LL A L LGAL GE L+ G+KM Sbjct: 757 RTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGE-LTTSGRKM 815 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 A L DP L+ M+++++ + +AA+L Sbjct: 816 AELPVDPMLSKMILASEKYSCSEEILTVAAML 847 >UniRef50_P36009 Probable ATP-dependent RNA helicase DHR2 n=16 Tax=Saccharomycetales RepID=DHR2_YEAST Length = 735 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/437 (34%), Positives = 241/437 (55%), Gaps = 12/437 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP---LQLLAHPGINGKIILLEPRRL 59 +LPV E+++ ++ P +L TG+GKST +P L+ L +G I + +PRR+ Sbjct: 80 TLPVYQHKREIMSYIESNPVTVLIGETGSGKSTQIPQFVLEKLYDTKKHGSIAVTQPRRV 139 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA N+A R+A+ K G+ VGY +R N TRL+ +T+G+L R + + +L + Sbjct: 140 AAINLATRVAQEHGCKLGEQVGYSVRFDNTTTTRTRLKYLTDGMLLRELMMNSDLREYSV 199 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER++ DL L L + QG R DL++++MSATL ++ + AP++ EGR Sbjct: 200 IVIDEAHERTVLTDLILGFLKSLIQGPRPDLRIIVMSATLQAEKFSEFFNNAPILFVEGR 259 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQR---VQEQLASRI 236 F V++ YL P D + +E G +L FLPG EI + + E++A + Sbjct: 260 KFDVKQYYLKAPTDDIVDAVIRCCIQINQGEELGDILCFLPGQEEIDKAVTIMEKIAKYV 319 Query: 237 GSD-----VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 + ++ PLY AL Q P RKVV +TNIAETS+TI G++ VVD Sbjct: 320 SDEAPVPLIVPYPLYAALPAVQQSLVFAPIKGFKRKVVFSTNIAETSVTISGVKFVVDSG 379 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 +V + + GL L+T +SQAS QR+GRAGR G S L + + QSEPE Sbjct: 380 LRKVKVWRHQLGLATLLTVPISQASAMQRSGRAGRESEGKSFRLYCESDYVKLPKQSEPE 439 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQK 410 I +SD++ ++ L ++G D +W + P ++ + L LGAL+ +++ +GQ+ Sbjct: 440 IARSDVTSPVLMLKRYGVDDLLNWTWFENPGKEAIVMGLQELYELGALDTRGKITKRGQQ 499 Query: 411 MAALGNDPRLAAMLVSA 427 MA L P L+++L+ A Sbjct: 500 MALLPLQPHLSSVLIKA 516 >UniRef50_Q14562 ATP-dependent RNA helicase DHX8 n=78 Tax=Eukaryota RepID=DHX8_HUMAN Length = 1220 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 175/524 (33%), Positives = 269/524 (51%), Gaps = 19/524 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 SLP+ + +L+ A+ +++ TG+GK+T + Q LA G GKI +PRR+A Sbjct: 564 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQI-TQYLAEAGYTSRGKIGCTQPRRVA 622 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E G VGY +R ++C P T ++ +T+G+L R DP+L+ ++ Sbjct: 623 AMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAII 682 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL Q R D+KL++ SATLD + Q EAP+ GR+ Sbjct: 683 MLDEAHERTIHTDVLFGLLKKTVQK-RQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRT 741 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 +PVE Y P D ++ L + G +L+FL G EI E L R+ S Sbjct: 742 YPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLG 801 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 802 PDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVK 861 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA--AQSEPEI 352 ++ +TG+ +L+ +SQA QRAGRAGR PG L E+A R + PEI Sbjct: 862 QKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYT-ERAYRDEMLTTNVPEI 920 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQ-GQKM 411 +++L+ ++ L G +D ++D PP+ L+ A L LGAL+ E L + G++M Sbjct: 921 QRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRM 980 Query: 412 AALGNDPRLAAMLVSAKN---DDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQR 468 A +P L ML+ + + +E T + ++ R D + + + Q Sbjct: 981 AEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYR--PKDKQALADQKKAKFHQT 1038 Query: 469 SQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L L V ++ P F + RR QD R Q+ Sbjct: 1039 EGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM 1082 >UniRef50_C8X757 ATP-dependent helicase HrpA n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X757_NAKMY Length = 1349 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 174/460 (37%), Positives = 250/460 (54%), Gaps = 39/460 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LPV+A + +L + V+++ TG+GKST LP L L G+ G I +PRR+A Sbjct: 74 AQLPVSARVQDLARTIAEHQVVIVAGETGSGKSTQLPKLCLQLGRGVRGMIGHTQPRRIA 133 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR +A+R+AE + G +GY +R + GP T ++++T+G+L I RD L + Sbjct: 134 ARALAERIAEETGTQLGGAIGYSIRFGDHTGPTTLVKLMTDGILLTEIARDRMLWAYDTI 193 Query: 121 ILDEFHERSLQADLALALLLDVQQGL---RDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 I+DE HERSL D L L QGL R DLKL+I SAT+D + + +APVV Sbjct: 194 IIDEAHERSLNIDFLLGYL----QGLLPQRPDLKLIITSATIDPGKFSRHFADAPVVEVS 249 Query: 178 GRSFPVERRYLP--LPAHQRFDD-----------------AVAVATAEMLRQESGSLLLF 218 GR+FPVE RY P L A DD A+ A E+L G +L+F Sbjct: 250 GRTFPVEIRYRPYGLDALPEVDDPDAEQSRGSSESADQGQAITAAVDELLAAGDGDILVF 309 Query: 219 LPGVGEIQRVQE----QLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNI 274 L G EI E LA R G +L PLYG LS DQ K P R++VL+TN+ Sbjct: 310 LSGEREITDTTEVLRGHLAGRRGLTEVL-PLYGRLSSADQHKVFSAHPG--RRIVLSTNV 366 Query: 275 AETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLH 334 AETSLT+ GIR V+D R++R+ PR+ + RL + +SQAS QRAGR GR+ GI + Sbjct: 367 AETSLTVPGIRYVIDPGTARISRYSPRSKVQRLPIEPISQASAGQRAGRCGRVANGICIR 426 Query: 335 LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQ 394 L +++ + A ++PEI ++ L+ +++++ D +LD P + +L Sbjct: 427 LYSEKDFDERPAYTDPEIARTSLASVILQMAALELGDIVDFPFLDPPDQRQITDGVTVLT 486 Query: 395 MLGALEGE-----RLSAQGQKMAALGNDPRLAAMLVSAKN 429 LGA++ RL+ G++MA L DPRLA MLV + Sbjct: 487 ELGAIDRSAGDRVRLTPTGREMADLPLDPRLARMLVEGER 526 >UniRef50_B2ANS3 Predicted CDS Pa_6_9920 n=3 Tax=Saccharomyceta RepID=B2ANS3_PODAN Length = 1151 Score = 252 bits (643), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 183/540 (33%), Positives = 270/540 (50%), Gaps = 59/540 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 SLPV A +L+ A+ +++ TG+GK+T L Q LA G NG I +PRR+A Sbjct: 503 SLPVFAFREQLINAVRENQVLIVVGETGSGKTTQL-TQYLAEAGFTNNGIIGCTQPRRVA 561 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E + + G+ VGY +R ++ P T+++ +T+G+L R I DPEL ++ Sbjct: 562 AVSVAKRVSEEVGCRLGEEVGYTIRFEDVTSPATKIKYMTDGMLEREILIDPELGRYSVI 621 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ ALL + R DLK+++ SATLD D+ + P+ GR+ Sbjct: 622 MLDEAHERTIATDVLFALLKKTMKS-RKDLKVIVTSATLDADKFSEYFNACPIFTIPGRT 680 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 FPVE Y P + G +LLFL G EI E L R+ + Sbjct: 681 FPVEILYSREP------------------EPMGDILLFLTGQEEIDTSCEILFERMKALG 722 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++ P+Y AL Q + PAP G RKVV+ATNIAETS+TI+ I V+D + Sbjct: 723 PSVPELIILPVYSALPSEMQSRIFDPAPPGSRKVVIATNIAETSITIDHIYYVIDPGFVK 782 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE----- 349 +DP+ G+ LI +SQA QRAGRAGR PG L + AA QSE Sbjct: 783 QNAYDPKLGMDSLIVTPISQAQANQRAGRAGRTGPGKCFRLYTE-----AAYQSEMLPTT 837 Query: 350 -PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQ- 407 PEI + +LS ++ L G +D + ++D PPV +L A L LGAL+ E L + Sbjct: 838 IPEIQRQNLSNTILMLKAMGINDLIRFDFMDPPPVNTMLTALEELYALGALDDEGLLTRL 897 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ 467 G+KMA +P L+ +L+S+ + + I A+L +L F R + Q Sbjct: 898 GRKMADFPMEPSLSKVLISSVDKGCSDEVVSIVAML---------NLSTIFYRPKDKQNQ 948 Query: 468 RSQQLLKR----------LNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG 517 Q+ K LNV + F + RR +D R Q+ M Sbjct: 949 ADQKKAKFHDPHGDHLTLLNVYNSWKNHGFSPTWCHENFIQARSMRRAKDVRDQIVKIMN 1008 >UniRef50_P43329 ATP-dependent RNA helicase hrpA n=101 Tax=Bacteria RepID=HRPA_ECOLI Length = 1300 Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 165/491 (33%), Positives = 270/491 (54%), Gaps = 20/491 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 +LPV+ ++L A+ V+++ TG+GK+T LP + + GI G I +PRRLAA Sbjct: 76 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAA 135 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+AE L +PG +GY++R + V NT ++++T+G+L IQ+D L +I Sbjct: 136 RTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTII 195 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK++I SAT+D +R + AP++ GR++ Sbjct: 196 IDEAHERSLNIDFLLGYLKELLPR-RPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTY 254 Query: 182 PVERRYLPLPAHQRFDD-------AVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 PVE RY P+ + DD A+ A E+ ++ G +L+F+ G EI+ + L Sbjct: 255 PVEVRYRPIV--EEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNK 312 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + PLY LS N ++ + + G R++VLATN+AETSLT+ GI+ V+D R Sbjct: 313 LNLRHTEILPLYARLS-NSEQNRVFQSHSG-RRIVLATNVAETSLTVPGIKYVIDPGTAR 370 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++R+ RT + RL + +SQAS QR GR GR+ GI + L +++ ++PEIL+ Sbjct: 371 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILR 430 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE------RLSAQG 408 ++L+ +++++ G D A +++ P N+ RLL+ LGA+ + +L+ G Sbjct: 431 TNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLG 490 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQ 467 ++++ L DPRLA M++ A+ A I + L + PR D A + Sbjct: 491 RQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHD 550 Query: 468 RSQQLLKRLNV 478 + L +N+ Sbjct: 551 KESDFLAFVNL 561 >UniRef50_D0KXD2 ATP-dependent helicase HrpA n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXD2_HALNC Length = 1394 Score = 251 bits (642), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 165/454 (36%), Positives = 251/454 (55%), Gaps = 35/454 (7%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV+ ++ + P V+++ TG+GK+T LP LL G+ G+I +PRR+A Sbjct: 94 AELPVSGQREAIMDLIRAHPVVIVAGETGSGKTTQLPKMLLELGFGVKGQIGHTQPRRIA 153 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARNVA RLAE L VGY++R + ++R+ V+T+G+L I DP+L + Sbjct: 154 ARNVASRLAEELGVTGAGVVGYKVRFSDQTRASSRVAVMTDGILLAEIHSDPDLLRYDAL 213 Query: 121 ILDEFHERSLQADLALAL---LLDVQQGLRDDLKLLIMSATLDNDRLQQML--------P 169 I+DE HERSL D L + LLD R D +L+I SAT+D R + P Sbjct: 214 IIDEAHERSLNIDFLLGIVRRLLD----RRPDFRLVITSATIDTARFARHFAGTDASGEP 269 Query: 170 E-APVVISEGRSFPVERRYLPLPAHQRFDD----------AVAVATAEMLRQES-----G 213 + APV+ GRSFPVE RY L A Q +D A VA + L E+ G Sbjct: 270 QPAPVITVAGRSFPVEYRYRSLTAPQNDNDTETEEERDLPAAVVAAVDELHAEAQTTGGG 329 Query: 214 SLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATN 273 +L+FLPG EI+ +L + PL+ LS +Q++ A R++VL TN Sbjct: 330 DILVFLPGEREIRECAHRLGRHGLRHTEILPLFARLSAAEQQRIF--AQHTGRRIVLTTN 387 Query: 274 IAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISL 333 +AETSLT+ GI V+D R+AR+ PR+ + +L + +SQAS QRAGR GR+ PG+ + Sbjct: 388 VAETSLTVPGILYVIDSGLARIARYSPRSRVQKLAVEAISQASANQRAGRCGRIAPGVCI 447 Query: 334 HLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLL 393 L + A ++PEIL+++L+ +++ +++ +P +++ P L A+RLL Sbjct: 448 RLFDEADYAGRPAFTDPEILRTNLASVVLRMIELRLGEPEHFPFIEPPDSRQLAGARRLL 507 Query: 394 QMLGAL-EGERLSAQGQKMAALGNDPRLAAMLVS 426 LGAL E +R++ G+++A L DP L M++S Sbjct: 508 FELGALDERQRITPLGRQLARLPVDPTLGRMVLS 541 >UniRef50_Q21LQ8 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=Q21LQ8_SACD2 Length = 1296 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/413 (37%), Positives = 238/413 (57%), Gaps = 13/413 (3%) Query: 23 VLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVG 81 V+L+ TG+GK+T LP + L GI G I +PRR+AAR VA R+A+ L GD VG Sbjct: 95 VILAGETGSGKTTQLPKICLELGRGIRGLIGHTQPRRIAARTVADRIAQELQVPLGDAVG 154 Query: 82 YRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLD 141 Y++R + V +T ++++T+G+L IQ+DP L +I+DE HERSL D L L Sbjct: 155 YQVRFTDHVTDSTLIKLMTDGILLAEIQQDPLLLKYDTLIIDEAHERSLNIDFLLGYLKQ 214 Query: 142 VQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDD--- 198 + R DLKL++ SAT+D DR + APV+ GR++PVE Y P H F+D Sbjct: 215 IL-AKRPDLKLIVTSATIDLDRFSKHFNNAPVIEVSGRTYPVEVLYRPW--HDEFEDLTQ 271 Query: 199 AVAVATAEM---LRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQR 255 A+ A E+ + G +L+FL G +I+ L + PLY LSL +Q Sbjct: 272 AIVNAVEEIQSISKGRGGDVLVFLSGERDIREASHALKKANLPHWEIVPLYARLSLEEQN 331 Query: 256 KAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQA 315 + +P R+VVLATN+AETSLT+ GIR V+D R+ R+ RT + RL + +SQA Sbjct: 332 RVF--SPHKGRRVVLATNVAETSLTVPGIRYVIDPGTARIKRYSLRTKVERLPVENISQA 389 Query: 316 SMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQM 375 S QR GR GR+ G+ + L +E E + ++PEIL+S+L+ +++++LQ D + Sbjct: 390 SANQRKGRCGRVSDGVCIRLYDREDFESRSEFTDPEILRSNLAAVILQMLQMRIGDVRKF 449 Query: 376 SWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLAAMLVSA 427 ++D+P + +LL+ LGA++ R++ G+ + L DP+ M+V+A Sbjct: 450 PFVDKPDNRLINDGFKLLEELGAVDKSNRVTKLGRDLQQLPLDPKFGRMIVAA 502 >UniRef50_C4LJ32 Putative ATP-dependent helicase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJ32_CORK4 Length = 1409 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 161/464 (34%), Positives = 261/464 (56%), Gaps = 28/464 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LPV+ + ++ + +++ TG+GK+T +P LA G G I +PRRLAAR Sbjct: 90 LPVSQRVDDIADTIRTHQVTIVAGETGSGKTTQIPKICLALGRGRKGMIGHTQPRRLAAR 149 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA+R+A + + G +VGY +R + VGP+T ++++T+G+L +QRD L +I+ Sbjct: 150 TVAERIASEVGQDIGQSVGYAIRFDDRVGPSTAIKLMTDGILLAEMQRDRLLRAYDTIII 209 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVISE 177 DE HERSL D L + + R DLK++I SAT+D ++ + + AP++ Sbjct: 210 DEAHERSLNIDFILGYIKRLLP-RRPDLKVIITSATIDPEKFARHFADEEGNPAPIIEVS 268 Query: 178 GRSFPVERRYLP-LPAHQRFD-----------DAVAVATAEMLRQESGSLLLFLPGVGEI 225 GR++PVE RY P +R D D V A E++ G +L F P +I Sbjct: 269 GRTYPVEIRYRPPYIERERKDGSVERIEKDPQDTVCEACEELMAAGPGDILCFFPSERDI 328 Query: 226 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 + + + ++ +V + PL+G LS +Q + +P R++VLATNIAETSLT+ GI Sbjct: 329 REAHDAIEAKKWPNVEVTPLFGRLSNAEQHRVF--SPHRGRRIVLATNIAETSLTVPGIH 386 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 VVD R++R+ RT + RL + +SQAS QR+GR+GR+ GI++ L ++E + Sbjct: 387 YVVDTGTARISRYSTRTKVQRLPIEPISQASANQRSGRSGRIAKGIAIRLYSEEDFDSRP 446 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGER- 403 ++PE+L+++L+ +++ + D + ++D P + +L LGAL EGER Sbjct: 447 EFTDPEVLRTNLASVIITMASLKLGDINEFPFIDPPEPRAIRDGMMVLHELGALGEGERD 506 Query: 404 ----LSAQGQKMAALGNDPRLAAMLVSAKNDDEA-ATAAKIAAI 442 LS+ G++++ + DPRLA MLV A + D AT+ IAA+ Sbjct: 507 GSPVLSSIGREISRIPVDPRLARMLVEAHHRDVVEATSVVIAAL 550 >UniRef50_Q3SHC5 ATP-dependent helicase HrpA n=3 Tax=Betaproteobacteria RepID=Q3SHC5_THIDA Length = 1275 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 165/450 (36%), Positives = 254/450 (56%), Gaps = 26/450 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKII-LLEPRRLAAR 62 LPVAA ++L AL+ ++L TG+GK+T +P L GK+I +PRR+AAR Sbjct: 25 LPVAARRDDILAALERHRVLILCGETGSGKTTQIPKMCLEAGIPPGKLIGCTQPRRIAAR 84 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+A+ L + G VGY++R + V P+T ++V+T+G+L Q DP LS +IL Sbjct: 85 SVAARIAQELGSELGGLVGYKVRFSDKVRPDTAIKVMTDGILLAESQGDPLLSRYDTIIL 144 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L + R DL++L+ SAT+D +R + +APV+ GR +P Sbjct: 145 DEAHERSLNIDFLLGYLKTLLDK-RADLRVLVTSATIDAERFSKHFDDAPVIEVSGRLYP 203 Query: 183 VERRYLPL--------PAHQR--------FDD------AVAVATAEMLRQESGSLLLFLP 220 VE R+ P+ P ++R + D A+ AT E+ R G +L+FLP Sbjct: 204 VEIRWRPIARDDEAGAPGNKREAEKPGRTYKDGPDQIAAILDATDELARLGPGDILVFLP 263 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 G EI+ E L + PL+ LS+ +Q AI +R++VLATN+AETSLT Sbjct: 264 GEREIRDTAEALRKHHPPGTEILPLFSRLSVAEQ-DAIFKPTSALRRIVLATNVAETSLT 322 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + GIR V+D RV R+ R + +L+ ++VSQAS QRAGR GR+ G+ + L + Sbjct: 323 VPGIRYVIDPGTARVKRYSARNKVEQLLIEKVSQASANQRAGRCGRVADGVCIRLYDEAD 382 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 ++PE+L+S L+G+++ + G D ++D P + +LL L AL+ Sbjct: 383 FSNRPRFTDPELLRSSLAGVILRMKSLGLGDVVGFPFIDPPSSRLVTDGYQLLGELHALD 442 Query: 401 GE-RLSAQGQKMAALGNDPRLAAMLVSAKN 429 + +L+ G+++A L DPR+A ML++A+ Sbjct: 443 EQGQLTKIGRQLAKLPLDPRIARMLLAAEQ 472 >UniRef50_C1ZJL9 ATP-dependent helicase HrpA n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZJL9_PLALI Length = 1305 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 171/461 (37%), Positives = 254/461 (55%), Gaps = 22/461 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LP+ E L L +++ TG+GKST LP L A GI+G I +PRR+A Sbjct: 80 NELPIMQRREEFLKLLSQHSVIIVCGETGSGKSTQLPKFCLEAQRGIDGLIGHTQPRRIA 139 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA RL+E L G VGY++R Q VG + ++++T+G+L IQ DP L + Sbjct: 140 ARSVAMRLSEELRAPLGQAVGYKVRFQEAVGAESYIKLMTDGILLAEIQSDPHLRRYDTI 199 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVIS 176 I+DE HERSL D L L + R DLK++I SAT+D +R Q AP++ + Sbjct: 200 IIDEAHERSLNIDFLLGYLKRLLTQ-RKDLKVIITSATIDAERFSQHFEVDGKPAPIIEA 258 Query: 177 EGRSFPVERRYLPL----PAHQRFD----DAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 GRS+PVE Y P+ A + D A+ A E Q G +L+FLP EI Sbjct: 259 SGRSYPVEILYRPILSKGDAAEDNDIDMQQAIVEAVQEATSQGFGDILVFLPTEREIHET 318 Query: 229 QEQL--ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 286 + L R S + PLY LS +Q++ + Q R+++LATN+AE+SLT+ GIR Sbjct: 319 AKILRGGERAASHREILPLYARLSAAEQQR-VFQVSQSQRRIILATNVAESSLTVPGIRY 377 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 V+D R++R+ PR+ + RL + VSQAS QRAGR GR+ PGI L ++A+ AA Sbjct: 378 VIDTGTVRLSRYSPRSKIQRLPIEPVSQASANQRAGRCGRVGPGICYRLY--DEADFAAR 435 Query: 347 Q--SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GER 403 + PEIL+++L+ ++++ G + +LD P ++ R L LGA++ R Sbjct: 436 DPFTVPEILRTNLAQVILKTESLGLGSLSSFPFLDPPRTESIRDGYRTLFELGAVDLDNR 495 Query: 404 LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE 444 L+ G+K++ + DPR+A +L +A A IA+ LE Sbjct: 496 LTELGKKLSRIPTDPRIARVLFAADEQLCLAEMLIIASALE 536 >UniRef50_A7ASE9 RNA helicase, putative n=1 Tax=Babesia bovis RepID=A7ASE9_BABBO Length = 931 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 160/451 (35%), Positives = 252/451 (55%), Gaps = 14/451 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP+ ELL A+ P +++ TG+GK+T +P Q L G GKI +PRR+AA Sbjct: 293 LPIYGYRHELLAAVRNHPILVVVGETGSGKTTQIP-QYLYEVGYGKAGKIGCTQPRRVAA 351 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA R+A+ + K G VGY +R ++C T ++ +T+G+L R + +P+LS +++ Sbjct: 352 MSVATRVAQEVGTKLGQEVGYSIRFEDCTSNQTVVKYMTDGMLLREMMTEPDLSSYSVMM 411 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER++ D+ L+ D+ + RDD +L++ SATL+ ++ AP+ GR F Sbjct: 412 IDEAHERTVHTDIIFGLVKDLCR-YRDDFRLIVASATLEAEKFALYFDHAPIFRIPGRRF 470 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---GS 238 PV+ Y P D +V + Q G +L+FLPG EI+ VQE+L +R+ G Sbjct: 471 PVQIYYTKAPEANFLDASVITVLQIHITQPLGDILVFLPGQQEIEEVQEELQNRLRNRGK 530 Query: 239 DV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 D+ ++ P+Y L + Q K P P RK +LATNIAETS+T+ I V+DC ++ Sbjct: 531 DMRELIVLPVYATLPSDMQAKIFEPTPPNARKAILATNIAETSITLNEIVYVIDCGFCKM 590 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ-SEPEILQ 354 + P+TG+ L+T S+AS QR GRAGR+ PG L K E+ ++PEI + Sbjct: 591 NSYSPKTGMESLVTVPCSKASANQRTGRAGRVRPGHCFRLYTKFSYEKEMDDVNDPEIQR 650 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--EGERLSAQGQKMA 412 S+L+ +++ L G D ++D P L+ A L+ LGAL +GE L+ G++MA Sbjct: 651 SNLAHVVLSLKALGIDDLINFDFMDPPAPETLIKALELIYALGALNDKGE-LTRTGRRMA 709 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 L DP + ML++++ + I A+L Sbjct: 710 ELPMDPTYSKMLLASEKYKCSNEIITICAML 740 >UniRef50_A0L8U8 ATP-dependent helicase HrpA n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8U8_MAGSM Length = 1305 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/433 (36%), Positives = 246/433 (56%), Gaps = 11/433 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LP+++ + A+ ++LS TG+GK+T LP + L G++G I + +PRR+AA Sbjct: 80 LPISSKREAIQQAIAQHQIIVLSGETGSGKTTQLPKICLELGLGVHGYIGVTQPRRIAAS 139 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +AQ LA L G+ VGY++R + VG + ++V+T+G+L Q+D LS +I+ Sbjct: 140 GIAQFLASDLGTPLGEKVGYKVRFHDQVGEHALVKVLTDGMLLAETQQDRFLSRYEAIII 199 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L LL + R DLK++I SATLD D+ AP++ GR++P Sbjct: 200 DEAHERSLNIDFLLGLLKGITVR-RPDLKIIISSATLDTDKFAAHFNHAPIISVSGRTYP 258 Query: 183 VERRYLPLPAHQRFD-----DAVAVATAEMLRQ-ESGSLLLFLPGVGEIQRVQEQLASRI 236 V RY PL D +A+ A E+ G +L+FLPG EI+ E L Sbjct: 259 VAVRYNPLDEKNEPDSDQRMEALLFAVEELFEDLPDGDVLIFLPGEREIKEAAEALRKHH 318 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + V + PLY LS +Q++ P + R+++L+TN+AETSLT+ I V+D R++ Sbjct: 319 PAHVEIVPLYARLSAKEQQRIFNPGSK--RRIILSTNVAETSLTVPRIHGVIDTGLARMS 376 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 RF RT + RL +R+SQAS QR GR GRL GI + L +++ + ++PE+L++ Sbjct: 377 RFSTRTQVQRLPIERISQASANQRKGRCGRLAAGICIRLYSEDDFNQRPLYTDPEVLRTS 436 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALG 415 L+ +++ + DP + ++D P + RLL+ L L + E L+ G+++A L Sbjct: 437 LAAVILTMKALKLGDPHKFPFIDAPKPTAIREGIRLLKELDGLDDNENLTDIGRQLAHLP 496 Query: 416 NDPRLAAMLVSAK 428 DPRLA ML++A+ Sbjct: 497 LDPRLARMLLAAE 509 >UniRef50_A3FQE8 Putative uncharacterized protein n=2 Tax=Cryptosporidium RepID=A3FQE8_CRYPV Length = 867 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 168/529 (31%), Positives = 261/529 (49%), Gaps = 58/529 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRL 59 +SLPV +++ +L+ P +++ TG+GK+T +P Q L G NG I +PRR+ Sbjct: 198 NSLPVVKFKEQIIKSLEEHPILIVVGETGSGKTTQIP-QYLFEAGYYKNGIIACTQPRRV 256 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA R+A+ + + G VGY +R ++C T ++ +T+G+L R +P+L Sbjct: 257 AAMSVAARVAKEMGSRLGGLVGYSIRFEDCTSEETVVKYMTDGILLREFLSEPDLKNYSC 316 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDL-----------------------KLLIMS 156 +++DE HERSL D+ L+ DV + D+ KL+I S Sbjct: 317 ILIDEAHERSLHTDILFGLVKDVSRFRNSDIYLENDIGKNGKIEGCANYNKNPFKLIISS 376 Query: 157 ATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVA----VATAEMLRQES 212 ATL+ ++ + AP++ GR FPV Y P D V + +++ R Sbjct: 377 ATLEANKFSEYFDNAPIIYIPGRRFPVNIYYTKSPEANFIDGTVVTVLQIHFSQIKRSNE 436 Query: 213 -----------GSLLLFLPGVGEIQRVQEQLASRIGS------DVLLCPLYGALSLNDQR 255 G +L FLPG EI+ Q L SR+ + ++++ P+Y +L Q Sbjct: 437 NMSSKKIIPVGGDILCFLPGQQEIEEAQALLESRLVNKDPNLPELIILPIYSSLPSEQQA 496 Query: 256 KAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQA 315 K P G RKVVLATNIAET+LT++ I VVDC + ++P+TGL LIT SQA Sbjct: 497 KIFQTTPYGFRKVVLATNIAETALTVDNIGFVVDCGFCKQNSYNPKTGLESLITVPCSQA 556 Query: 316 SMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQ 374 + QR+GRAGR+ PG L K + PEI + +L ++ + G D Sbjct: 557 AANQRSGRAGRVRPGKCFRLYTKLSFTTEMEVSNVPEIQRCNLGNAVLVIKSLGIDDLLH 616 Query: 375 MSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEA 433 ++D PP L+ A LL LGAL+ + L+ G+ MA L DP M+++++ Sbjct: 617 FDFMDPPPPETLIRALELLYSLGALDDKGELTKVGRTMAELPIDPMHGKMVLASQKYSVV 676 Query: 434 ATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGE 482 A I ++L +GNS F R + +Q + + K V GG+ Sbjct: 677 NEATTIVSMLS----VGNS----IFIRPKEKAKQ-ADSIRKAFTVHGGD 716 >UniRef50_Q2LSZ0 ATP-dependent helicase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSZ0_SYNAS Length = 1282 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 163/465 (35%), Positives = 260/465 (55%), Gaps = 26/465 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LP+ A E++ A+ V+++ TG+GK+T LP + L A GING I +PRR+A Sbjct: 34 ADLPITARRREIVQAIARHRVVVITGETGSGKTTQLPKMCLEAGRGINGIIGCTQPRRVA 93 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A VA+R+AE L + G VGYR+R ++ GP+ + ++T+G+L Q DP L + Sbjct: 94 AVTVAERIAEELGQTVGQAVGYRIRFEDRSGPSPYIRIMTDGILLMETQSDPLLHAYDTI 153 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D L L + + R+DLK++I SAT+D ++ APV+ GR Sbjct: 154 IVDEAHERNLNIDFLLGYLKTLLRK-RNDLKIIITSATIDTEKFAAAFDGAPVIEVTGRV 212 Query: 181 FPVERRYLPLPAHQRFDDAV----AVATAEMLR---QESGSLLLFLPGVGEIQRVQEQLA 233 +PVE Y P+ ++ AV E LR + G +L+F+P +I+ E L Sbjct: 213 YPVEVLYRPIEQGDGDEEITHVEAAVRAVEELRARRSDRGDILIFMPTEQDIRDTCELLE 272 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R ++++ PL+ LS +QR+ I A +K+++ATNIAETSLTI GIR V+D Sbjct: 273 GRRYENLVILPLFARLSWAEQRR-IFSATTA-QKIIVATNIAETSLTIPGIRYVIDTGYA 330 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 RV++++PRT L + +S++S QR GR GR++ G+ + L +E S PEIL Sbjct: 331 RVSQYNPRTRTNSLPVRAISRSSADQRKGRCGRVQNGVCIRLYEEEDYLNRPQFSVPEIL 390 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE----------- 402 +S+L+ +++ +L+ PA ++D P ++ +L+ LGA+ E Sbjct: 391 RSNLAEVILRMLKLRLGHPAAFPFIDAPNPKSVRDGFEILKELGAISIEKNRNSREEGNG 450 Query: 403 ----RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 RL+ +G++MA L DPR+A +L+ A+ + A IA+ L Sbjct: 451 EADVRLTERGRRMARLPMDPRIARILLEAEKEGCVEEATIIASGL 495 >UniRef50_B8FCF5 ATP-dependent helicase HrpA n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCF5_DESAA Length = 1357 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 161/457 (35%), Positives = 257/457 (56%), Gaps = 20/457 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LP++ E++ A+ V+++ TG+GK+T +P + L A G++G I +PRR+AA Sbjct: 115 LPISGRSEEIVEAIQENQVVVITGETGSGKTTQIPKMCLAAGRGVDGLIGCTQPRRVAAV 174 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTR--LEVVTEGVLTRMIQRDPELSGVGLV 120 VAQR+AE L E G +VGY++R + G + ++++T+GVL Q DP + + Sbjct: 175 TVAQRIAEELGEDLGKSVGYKIRFKETGGKSEAPFIKIMTDGVLLAEFQHDPFFTKYDTI 234 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L +L ++ R DLK++I SAT+D ++ + +AP+V GR Sbjct: 235 IVDEAHERSLNIDFILGILKNLLPK-RPDLKVIITSATIDTEKFSKAFNDAPIVEVSGRM 293 Query: 181 FPVERRYLPLPAHQ-------RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 +PVE RY PL D AV R+ G +L+F+P +I+ + L Sbjct: 294 YPVEVRYEPLLTSGDENSDAGYVDGAVRAVETIFSRRPKGDILVFMPTESDIRETCDLLQ 353 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 +R + L+ PL+G L+ +Q + A KVV+ATN+AETS+TI GIR VVD Sbjct: 354 ARRFPNALILPLFGRLAGGEQARVF--ARHSGIKVVVATNVAETSITIPGIRYVVDTGLA 411 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R++R+ PRTG T L ++S++S QR GR GR+ GI + L +E E + PEIL Sbjct: 412 RISRYSPRTGTTSLPVDKISKSSADQRMGRCGRVAEGICIRLYDEEDYESRPQFTLPEIL 471 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL----EGER---LSA 406 +++L+ +++ ++ + ++D P ++ +L+ LGAL +GE+ L+ Sbjct: 472 RANLAEVILRMVASRLPEVHNFPFVDPPDPRSIRDGFNVLRELGALLDPRQGEKSYTLTP 531 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 +G+ MA L DPR++A+L+ A A A IA+ L Sbjct: 532 KGRTMARLPVDPRISAILIEAHPRGCLAEALIIASAL 568 >UniRef50_Q1C7D5 ATP-dependent helicase HrpA n=4 Tax=Bacteria RepID=Q1C7D5_YERPA Length = 644 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/438 (35%), Positives = 253/438 (57%), Gaps = 14/438 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 +LPV+ ++ A+ ++++ TG+GK+T LP + L G+ G I +PRRLAA Sbjct: 72 NLPVSQKKQDIYNAIRDHQVIIVAGETGSGKTTQLPKICLELGRGVKGVIGHTQPRRLAA 131 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ L+ G VGY++R + VG NT ++++T+G+L IQ+D L +I Sbjct: 132 RTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLI 191 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK++I SAT+D R Q AP++ GR++ Sbjct: 192 IDEAHERSLNIDFILGYLRELLPK-RPDLKVIITSATIDPQRFSQHFNNAPIIEVSGRTY 250 Query: 182 PVERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE RY P+ A+ A E+ R+ +G +L+F+ G EI+ + L + Sbjct: 251 PVEVRYRPIVDDADDVDRDQLQAIFDAVDELGRESAGDILIFMSGEREIRDTADALIKQN 310 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS N ++ + + G R++VLATN+AETSLT+ GI+ V+D R++ Sbjct: 311 LPHTEVLPLYARLS-NSEQNRVFQSHHG-RRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ RT + RL + +SQAS QR GR GR+ GI + L +++ ++PEIL+++ Sbjct: 369 RYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFTDPEILRTN 428 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-----ERLSAQGQKM 411 L+ +++++ G D A +++ P N+ RLL+ LGA++ ++L+ G+++ Sbjct: 429 LASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQLTPLGRQL 488 Query: 412 AALGNDPRLAAMLVSAKN 429 A L DPRLA M++ A+ Sbjct: 489 AQLPVDPRLARMVLQAQK 506 >UniRef50_C4JEY7 ATP-dependent RNA helicase DHX8 n=25 Tax=cellular organisms RepID=C4JEY7_UNCRE Length = 1446 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 165/437 (37%), Positives = 241/437 (55%), Gaps = 15/437 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING---KIILLEPRRL 59 SLP+ ELL A+ +++ TG+GK+T +P Q L G KI +PRR+ Sbjct: 453 SLPIYQFREELLQAIADHQIIIIVGETGSGKTTQIP-QYLHEAGYTKGGMKIGCTQPRRV 511 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA R+AE + K G+ VGY +R ++ T L+ +T+G+L + + +P+LS Sbjct: 512 AAMSVAARVAEEMGVKVGNEVGYAIRFEDATSDKTILKYMTDGLLLKELLTEPDLSQYAA 571 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER++ D+A LL D+ + R DLKLLI SAT+D + Q+ +AP+ GR Sbjct: 572 LMIDEAHERTVPTDIACGLLKDIAKA-RPDLKLLISSATIDAQKFQKYFDDAPIFNIPGR 630 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL---ASRI 236 +PV+ Y P A+ + Q G +L+FL G EI+ ++ L A ++ Sbjct: 631 RYPVDIHYTSQPEANYLAAAITTVFQIHITQGRGDILVFLTGQEEIEAAEQNLQETARKL 690 Query: 237 GSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 G V ++CP+Y L Q K P P G RKVVLATNIAETSLTI+GI V+D Sbjct: 691 GGKVPEMIICPIYANLPSELQTKIFEPTPPGARKVVLATNIAETSLTIDGIVYVIDPGFV 750 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEPEI 352 + F+PRTG+ L+ S+AS QRAGRAGR+ PG L K A + PEI Sbjct: 751 KENVFNPRTGMESLVVTPCSRASAGQRAGRAGRVGPGKCFRLYTKWAYHNELEANTTPEI 810 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--EGERLSAQGQK 410 +++LS +++ L G D ++D PP L+ A L LGAL GE L+ G++ Sbjct: 811 QRTNLSSVVLMLKSLGIDDLLDFDFMDPPPAETLIRALEQLYALGALNDHGE-LTKIGRQ 869 Query: 411 MAALGNDPRLAAMLVSA 427 MA DP LA +++A Sbjct: 870 MAEFPTDPMLAKAILAA 886 >UniRef50_Q31H28 ATP-dependent helicase HrpA n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31H28_THICR Length = 1342 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 159/465 (34%), Positives = 258/465 (55%), Gaps = 17/465 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 +LPVA E+L + V+++ TG+GK+T +P + L A G+ G+I +PRRLAA Sbjct: 97 NLPVAERRDEILELIQNNQVVVIAGETGSGKTTQIPKICLEAGRGVFGRIGCTQPRRLAA 156 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+AE L G VGY++R + V + L+V+T+G+L IQ DP L+ +I Sbjct: 157 RSVAERIAEELGSSLGQLVGYQVRFHDQVHQQSLLKVMTDGILLAEIQNDPYLNQYDTII 216 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERS+ D L +L + R DLKL+I SAT+D +R AP++ GR++ Sbjct: 217 IDEAHERSINIDFLLGILKKLLPK-RRDLKLIITSATIDTERFASFFEGAPIIEVSGRTY 275 Query: 182 PVERRYLPLPAHQ-----RFDDAVAVATAEMLRQES-----GSLLLFLPGVGEIQRVQEQ 231 PVE RY PL + F+ + A L + S G +L+F G +I+ E Sbjct: 276 PVEVRYNPLVKIEDDEGNEFEQDIPTAIVYALEELSEIDPFGDVLVFQVGERDIKETAEV 335 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L + + + PLY LS+ +Q K + + R+V+L+TN+AETSLT+ GI+ V+D Sbjct: 336 LRKQNLKNTEIVPLYARLSMAEQNKVFQTSQK--RRVILSTNVAETSLTVPGIKFVIDPG 393 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R++R+ R+ + RL +++SQAS QRAGR GR+ G+ + L ++ + + PE Sbjct: 394 LVRISRYSVRSKVQRLPIEKISQASANQRAGRCGRVSSGVCIRLYDEDDFKSRPEFTPPE 453 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQK 410 I ++ L+ +++++ Q +++ P + R L +GAL E RL+ G+ Sbjct: 454 IHRTSLATVILQMTQMKLGSVKHFPFIEPPEDKAINDGFRQLHEIGALDEKRRLTESGRH 513 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAI--LEEPPRMGNSD 453 +A L DPR+A M++ + + A IAA +++P M S+ Sbjct: 514 LAKLPLDPRMAKMVLEGQKNGVLAEVLIIAAAISIQDPRDMNESN 558 >UniRef50_B0RGP0 ATP-dependent helicase n=3 Tax=Actinobacteria (class) RepID=B0RGP0_CLAMS Length = 1272 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 164/456 (35%), Positives = 256/456 (56%), Gaps = 35/456 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LPV+ + E+ A+ V+++ TG+GK+T LP ++ G I +PRRLAAR Sbjct: 11 LPVSRMRDEIADAIRDNQVVIVAGATGSGKTTQLP-KICLELG-RESIGHTQPRRLAART 68 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 +++R+AE L + G VGY++R + V +TR++++T+G+L +QRD L +I+D Sbjct: 69 ISERIAEELGGEVGQLVGYQVRFTDKVSADTRIKLMTDGILLNELQRDRLLKKYDTIIID 128 Query: 124 EFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 E HERSL D L L +Q L R DLKL+I SAT+D + +AP+V GR++ Sbjct: 129 EAHERSLNIDFLLGYL---KQLLPRRPDLKLIITSATIDPQSFSKHFGDAPIVEVSGRTY 185 Query: 182 PVERRYLPL--------------------PAHQR-FDDAVAVATAEMLRQESGSLLLFLP 220 PVE RY PL PA R F + + A E+ + SG +L+FL Sbjct: 186 PVEIRYRPLVAEAAVAGEDDDLADAPLERPADDRDFLEGINAALDELAAESSGDVLVFLS 245 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQG--MRKVVLATNIAETS 278 G EI+ ++ + SR + PLYG LS DQ + P+ Q R++VLATN+AETS Sbjct: 246 GENEIRDAEDAIRSRNLPHTEVLPLYGRLSSADQHRVFQPSTQAGVRRRIVLATNVAETS 305 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ GI+ V+D R++R+ R+ + RL + +SQAS QR+GR+GR GI++ L ++ Sbjct: 306 LTVPGIKYVIDAGTARISRYSVRSKVQRLPIEAISQASANQRSGRSGRTSDGIAIRLYSE 365 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 E R +EPEIL+++L+ ++++++ G D A +L P + LL LGA Sbjct: 366 EDFLRRPEFTEPEILRTNLAAVILQMVSLGLGDIAAFPFLQPPDSRGIKDGVDLLTELGA 425 Query: 399 L----EGE-RLSAQGQKMAALGNDPRLAAMLVSAKN 429 + +G L+ G+ ++ L DPR A M+V ++ Sbjct: 426 VIRSPDGTPALTQVGRDLSRLPIDPRFARMVVESRK 461 >UniRef50_Q5ANN5 Likely spliceosomal DEAD box ATPase n=3 Tax=Eukaryota RepID=Q5ANN5_CANAL Length = 865 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 159/461 (34%), Positives = 243/461 (52%), Gaps = 15/461 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI---NGKIILLEPRRL 59 SLPV + E L ++ +++ TG+GK+T LP Q L G N I +PRR+ Sbjct: 228 SLPVYSYREEFLKIINENQTLIVVGETGSGKTTQLP-QYLHEAGYSRNNQVIACTQPRRV 286 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQ-NCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 AA +VA R+A + K G+ VGY +R NC T ++ VT+G+L R +DP L Sbjct: 287 AATSVANRVANEMQVKLGEQVGYNIRFDDNCKDGVTVIKYVTDGMLLREFLQDPTLGKYS 346 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLR-DDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 +++DE HER+L ++ L+LL DV R DDLK++I SAT++ ++ Q AP++ Sbjct: 347 AIMIDEAHERTLSTEILLSLLKDVMMTTRKDDLKIIIASATINAEKFSQFFNNAPILNIP 406 Query: 178 GRSFPVERRYLPLPAHQRFDDAVA-VATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 GR FPV+ Y P A+ + M + G +L+FL G EI+ ++E L I Sbjct: 407 GRRFPVKIHYTKQPEANYIQAAITTIFQIHMTQPLPGDILVFLTGQDEIETMEEILRDSI 466 Query: 237 ---GSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 G + ++C +Y L Q+K P P RK+VLATNIAETS+TI+GI V+D Sbjct: 467 LKLGDQIDPMIVCSIYANLPQELQQKIFQPTPSNTRKIVLATNIAETSITIDGISYVIDP 526 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSE 349 + ++P TG+ L+ S+AS QRAGRAGR+ PG L K + + Sbjct: 527 GYVKQNVYNPTTGMESLVVVPCSRASADQRAGRAGRVGPGKCFRLFTKWSFYNELDSNQQ 586 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PEI + +L+ +++ LL G +D ++D P ++ A LL LGAL + +L+ G Sbjct: 587 PEIQRVNLTSVILLLLSLGINDLLGFEFMDPPSKEAIIKALNLLYALGALNTQGKLTKTG 646 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM 449 +KM+ DP ++++ D I A+L E + Sbjct: 647 KKMSEFPLDPVFTKCILTSDKFDNTKQIISIIAMLNESSNL 687 >UniRef50_C5DCP1 KLTH0B04664p n=2 Tax=Saccharomycetales RepID=C5DCP1_LACTC Length = 700 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 151/438 (34%), Positives = 242/438 (55%), Gaps = 9/438 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH--PGINGKIILLEPRRL 59 ++LPV +++ ++ +L TG+GKST +P L+ + + +I + +PRR+ Sbjct: 61 ATLPVYKHKDSIMSHINKNQVTILIGETGSGKSTQIPQFLMENFPEKTDKRIAVTQPRRV 120 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA N+A R+A+ + G+ VGY +R N T+L+ +T+G+L R I D LS Sbjct: 121 AAINLASRVAQEYGCRLGERVGYSVRFDNKSNARTKLKYLTDGMLLREIMLDKNLSDYSC 180 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI+DE HER++ DL L L ++ R DLK+++MSATL ++ + AP++ EGR Sbjct: 181 VIIDEAHERTILTDLILGFLKELINSSRQDLKVVVMSATLQAEKFSEFFGRAPILFVEGR 240 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQR---VQEQLASRI 236 FPV+R YL D + ++ G +L F+PG EI + + ++ + Sbjct: 241 KFPVQRSYLKAQCDDVVDAIIRCCVQLNQSEQMGDILCFMPGQEEIDKAVAILSKVGEHL 300 Query: 237 GSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 G+ V + PLY AL +Q K P RKVV +TN+AETS+TI G++ VVD Sbjct: 301 GASVPRLVALPLYAALPPAEQAKVFAPVKGFKRKVVFSTNLAETSVTISGVKFVVDSGLR 360 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 +V + + GL L+T +S+AS +QR GRAGR G L ++ ++ Q+EPEI Sbjct: 361 KVKVWRHQLGLATLLTVPISKASASQRTGRAGRESAGKCFRLYREQDYQKLPNQTEPEIA 420 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 +S+++ ++ L + G D SWL+ P +L A + L LGAL+ +++ +GQKMA Sbjct: 421 RSEVTSPILMLKKVGVKDIVNWSWLENPGKQAILMALQELFQLGALDDSGKITNKGQKMA 480 Query: 413 ALGNDPRLAAMLVSAKND 430 L P L+++L+ A D Sbjct: 481 LLPLAPHLSSVLLKAHED 498 >UniRef50_P53131 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 n=167 Tax=Eukaryota RepID=PRP43_YEAST Length = 767 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 168/461 (36%), Positives = 248/461 (53%), Gaps = 19/461 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH--PGI-NGKIILLEPRRLA 60 LPV A E L ++ TG+GK+T +P +L P + N ++ +PRR+A Sbjct: 93 LPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVA 152 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VAQR+AE ++ K G+ VGY +R +N T L+ +T+G+L R D +LS + Sbjct: 153 AMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCI 212 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HER+L D+ + LL V + R DLK++IMSATLD ++ Q+ +AP++ GR+ Sbjct: 213 ILDEAHERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRT 271 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV-------QEQLA 233 +PVE Y P D A+ +E+G +LLFL G EI+ +QL Sbjct: 272 YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLV 331 Query: 234 SRIGSDVL-LCPLYGALSLNDQRKAILPAPQGM-----RKVVLATNIAETSLTIEGIRLV 287 G L + PLYG+L + Q++ PAP+ RKVV++TNIAETSLTI+GI V Sbjct: 332 REEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYV 391 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA-AA 346 VD + ++PR + L+ +S+AS QRAGRAGR PG L +E ++ Sbjct: 392 VDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIE 451 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLS 405 QS PEIL+S+LS ++EL + G D ++D P ++ A L L L+ E L+ Sbjct: 452 QSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT 511 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP 446 G+ + DP LA ML+ + + I A+L P Sbjct: 512 PLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVP 552 >UniRef50_B6AI28 Pre-mRNA-processing protein 8, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AI28_9CRYT Length = 878 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 160/488 (32%), Positives = 253/488 (51%), Gaps = 63/488 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRL 59 SSLPV E+L++L+ P +++ TG+GK+T +P Q L G G I +PRR+ Sbjct: 197 SSLPVIKYREEILSSLEKYPILIVVGETGSGKTTQIP-QYLYEAGYAEKGTIACTQPRRV 255 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA R+++ +N + G VGY +R ++C +T+++ +T+G+L R +P+LSG Sbjct: 256 AAMSVANRVSKEMNCRLGSKVGYTIRFEDCTNEDTKIKYMTDGILLREFLSNPDLSGYSC 315 Query: 120 VILDEFHERSLQADLALALLLDVQQ--GLRDD--------------LKLLIMSATLDNDR 163 +++DE HERSL D+ L+ DV + +DD KL+I SATL+ ++ Sbjct: 316 LLIDEAHERSLHTDVLFGLVKDVSKFRNFKDDNLSTKSDCEDSTEPFKLIISSATLEAEK 375 Query: 164 LQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEM----LRQES------- 212 + +P++ GR +PV+ Y P F DA V ++ L++ + Sbjct: 376 FGKYFDNSPIIYIPGRRYPVDIYYTKAP-EANFIDATVVTVLQIHLSQLKKSNKTEGIID 434 Query: 213 ------------------------GSLLLFLPGVGEIQRVQEQLASRI---GSDV---LL 242 G +L FLPG EI+ E L ++ G +V ++ Sbjct: 435 NNSTIKSLDNIGMNFSRTRIIPTGGDILCFLPGQQEIEECMEMLNKKMLGKGKEVPELIV 494 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 P+Y +L Q + + PQG RKVVLATNIAET+LTI+ I V+DC + ++P+T Sbjct: 495 LPIYASLPSEQQAQIFISTPQGARKVVLATNIAETALTIDNIGFVIDCGFCKQNSYNPKT 554 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEILQSDLSGLL 361 GL L+T S+A+ QRAGRAGR+ PG L K S PEI + +L ++ Sbjct: 555 GLDSLVTIPCSRAAANQRAGRAGRVRPGKCFRLYTKTSFYMEMEPSNTPEIQRCNLGNVV 614 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRL 420 + L G D ++D PP L+ A LL L AL+ + L+ G+KMA L DP Sbjct: 615 LMLKSLGIDDLLHFDFMDPPPPETLVKALELLYGLNALDDKGDLTNIGRKMAELPLDPMY 674 Query: 421 AAMLVSAK 428 + ++++++ Sbjct: 675 SKVVLASQ 682 >UniRef50_Q09530 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 n=44 Tax=Eukaryota RepID=MOG5_CAEEL Length = 1200 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 159/433 (36%), Positives = 245/433 (56%), Gaps = 12/433 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 SLP+ A+ L+ A+ +++ TG+GK+T + + A G GKI +PRR+AA Sbjct: 539 SLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGKIGCTQPRRVAA 598 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE K G VGY +R ++C +T ++ +T+G+L R DP+LSG L++ Sbjct: 599 MSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDLSGYSLIM 658 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL + R +LKL+I SATLD+ + + EAP+ GR+F Sbjct: 659 LDEAHERTIHTDVLFGLLKAAARK-RPELKLIITSATLDSVKFSEYFLEAPIFTIPGRTF 717 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PVE Y P + A L + G +L+FL G EI E L R+ S Sbjct: 718 PVEILYTREPESDYLEAAHITVMQIHLTEPPGDVLVFLTGQEEIDTSCEVLYERMKSMGP 777 Query: 239 ---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+YGAL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 778 DVPELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQ 837 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA--QSEPEIL 353 ++P++G+ L+ +SQA+ QR+GRAGR PG L E+A R PEI Sbjct: 838 KIYNPKSGMDSLVVTPISQAAAKQRSGRAGRTGPGKCYRLYT-ERAFRDEMLPTPVPEIQ 896 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQ-GQKMA 412 +++L+ L++L G ++ ++D PP+ +++ A L L AL+G+ L + G++MA Sbjct: 897 RTNLASTLLQLKAMGINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMA 956 Query: 413 ALGNDPRLAAMLV 425 +P L+ +L+ Sbjct: 957 EFPLEPSLSKLLI 969 >UniRef50_A9WQ04 ATP-dependent helicase n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WQ04_RENSM Length = 1296 Score = 249 bits (635), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 170/459 (37%), Positives = 257/459 (55%), Gaps = 38/459 (8%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP---LQL-LAHPGINGKIILL---EP 56 LPV+A EL+ A+ V+++ TG+GK+T +P L+L L PG +GK L+ +P Sbjct: 11 LPVSARREELMAAIRDHQVVIIAGETGSGKTTQIPKMCLELGLTEPGKDGKPRLIGHTQP 70 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RRLAAR VA+R+A L+ K G+ VG+++R V T+++V+T+G+L IQRD L Sbjct: 71 RRLAARTVAERIAAELDVKIGEEVGFQVRFTGEVSRQTKVKVMTDGILLAEIQRDKLLHR 130 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----EAP 172 +I+DE HERSL D L L + R DLK++I SAT+D +R Q AP Sbjct: 131 YSTLIIDEAHERSLNIDFILGYLRQILPK-RPDLKIIITSATIDPERFAQHFAIDNVPAP 189 Query: 173 VVISEGRSFPVERRYLPL------PAHQRFDD--------AVAVATAEMLRQESGSLLLF 218 + GR++PVE RY PL PA Q DD AV A E+ + G +L+F Sbjct: 190 IEEVSGRTYPVEIRYRPLDGSDGEPAEQSEDDSEDKDPLDAVCDAVEELSGEAPGDVLIF 249 Query: 219 LPGVGEIQRVQEQLASRIGS-----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATN 273 G EI+ E L R + + PL+ LSL +Q +P R++VLATN Sbjct: 250 FSGEREIRDAAEALRGRFAHHPRLREAEILPLFARLSLAEQHAVF--SPGSRRRIVLATN 307 Query: 274 IAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISL 333 +AETSLT+ GI+ V+D R++R+ RT + RL +R+SQAS QRAGR GR+ GI + Sbjct: 308 VAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERISQASANQRAGRCGRVSDGICI 367 Query: 334 HLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCS----DPAQMSWLDQPPVVNLLAA 389 L ++ + ++PEIL+++L+ +++++ G + D A +++ P + Sbjct: 368 RLYSEADFQGRREFTDPEILRTNLAAVILQMSAIGVAREPKDVASFPFVEPPDAKAIADG 427 Query: 390 KRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSA 427 LL LGAL+ + +S G+++A L DPRL M+V + Sbjct: 428 VALLSELGALQPDGGISPVGRQLAQLPVDPRLGRMIVES 466 >UniRef50_UPI0001AF48FA ATP-dependent helicase HrpB, putative n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF48FA Length = 501 Score = 248 bits (634), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 184/495 (37%), Positives = 262/495 (52%), Gaps = 38/495 (7%) Query: 328 EPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLL 387 EPG+ L ++ Q ++ AA EILQ+DL+GL ++L +WG + PAQ+ WLD PP Sbjct: 1 EPGVCYRLWSEAQHDQLAAYGAAEILQADLAGLALQLARWGVT-PAQLVWLDIPPAAAYA 59 Query: 388 AAKRLLQMLGALEGE-----RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAI 442 A+ LL L AL + L GQ MA L PR+A +L+ A +AA+ Sbjct: 60 QAQDLLVRLEALSYQPGQLPALMPHGQAMAELPAHPRIAHLLLRGHALGLGELACDVAAL 119 Query: 443 LEEPP--RMGNSDLGVAFS---------RNQPAWQQRSQQLLKRLNVRG---GEADSSLI 488 L E R G +DL + R QR++QL ++ RG G A+S + Sbjct: 120 LGERDILRGGGADLHSRLTLLAGSERAARGAQGGVQRAKQLARQ--YRGYLRGAANSPVS 177 Query: 489 AP--------LLAGAFADRIAR-RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQ 539 P LLA A+ DR+A+ RR Y+LANG A+ DAL + WL+ L Sbjct: 178 DPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLANGRAALFAEADALMKQPWLVIADLGS 237 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQP 599 + RI LA D + V D ++WD+ +G +A R+ + G+L + +P Sbjct: 238 RQGQREERIYLAAEFDPALFDSVLAEQVITLDQIDWDEREGVFRAERQRKAGELIISREP 297 Query: 600 LAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR-----LRLLCAAKWLPEYDWPAVDD 654 L E A+L +R KGL +L WT E Q + LR L K +WP + D Sbjct: 298 LIGLDEAARSHALLALVRRKGLELLPWTPELRQWQARVALLRNLDVDK-NATSEWPDLSD 356 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSR 714 LLA LE WL+P++ V L LD+ LR LL W + Q+L+++ P VP+GS Sbjct: 357 AQLLATLENWLMPYLGKVTRLSHFGQLDLSSILRNLLPWPLPQQLEAQAPQTIQVPSGSN 416 Query: 715 IAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKG 774 I I Y+E PP L+VR+QE+FG + P IA GR L L LLSPA+RP+Q+T+DL++FW+ Sbjct: 417 IRIDYNE-QPPVLSVRLQELFGLSDTPRIASGRQVLKLHLLSPARRPVQVTQDLANFWRS 475 Query: 775 AYREVQKEMKGRYPK 789 Y +V+K++KGRYPK Sbjct: 476 TYIDVKKDLKGRYPK 490 >UniRef50_C0VVM1 HrpA family ATP-dependent helicase n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVM1_9CORY Length = 1344 Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 161/461 (34%), Positives = 261/461 (56%), Gaps = 25/461 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV+ + ++ A+ V+++ TG+GK+T +P + L G G I +PRRLAAR Sbjct: 73 LPVSRRVDDIAAAIRDNQVVIIAGETGSGKTTQIPKICLEIGRGRRGMIGHTQPRRLAAR 132 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA+R+AE + + G++VGY +R + VGP+T ++++T+G+L +QRD L+ +I+ Sbjct: 133 TVAERIAEEVGQNIGESVGYAIRFDDKVGPHTAVKIMTDGILLAEMQRDRFLNAYDTIII 192 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVISE 177 DE HERSL D L L + R DLK++I SAT+D +R + + AP++ Sbjct: 193 DEAHERSLNIDFILGYLKRLLPK-RPDLKVIITSATIDPERFARHFADRSGRPAPIIEVS 251 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAV--------ATAEMLRQESGSLLLFLPGVGEIQRVQ 229 GR++PVE RY PL D VA+ A E++++ G +L F G +I+ Sbjct: 252 GRTYPVEIRYRPL-VEIHGDKEVAIDELDGLLAALEELMQEGPGDILCFFAGERDIRDAL 310 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 + +++R +V + PL+G LS +Q + +P R++VLATNIAETSLT+ GI VVD Sbjct: 311 DAISARKFKNVEVTPLFGRLSNAEQHRVF--SPHRGRRIVLATNIAETSLTVPGIHYVVD 368 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++R+ RT + RL + +SQAS QR+GR GR+ GI++ L ++E ++ Sbjct: 369 TGLARISRYSNRTKVQRLPIEPISQASANQRSGRCGRVANGIAIRLYSEEDFASRPEFTD 428 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-------EGE 402 PEI +++L+ +++++ D ++ P ++ +LL LGA+ E Sbjct: 429 PEIHRTNLASVILQMALLRLGDIRNFPFVQAPDEKSIRNGIQLLLELGAINEQKPGDESP 488 Query: 403 RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 RL+A G+++A + DPRLA ML+ A+ A I A L Sbjct: 489 RLTAVGRQIARIPVDPRLARMLIEAEKMHVLAPVTIIVAAL 529 >UniRef50_A3YEF6 ATP-dependent helicase HrpA n=1 Tax=Marinomonas sp. MED121 RepID=A3YEF6_9GAMM Length = 1328 Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 159/458 (34%), Positives = 258/458 (56%), Gaps = 23/458 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 SLPVAA ++ ++ V+++ TG+GK+T LP + L A G+ G I +PRRLAA Sbjct: 62 SLPVAAKAEYIIASIKANQVVIVAGETGSGKTTQLPKMCLQAGLGVAGMIGHTQPRRLAA 121 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+++ L + GD VG+++R + T ++++T+G+L IQ+D L +I Sbjct: 122 RSVADRISDELGVELGDEVGFQVRFNDESSDKTLVKLMTDGILLAEIQQDKFLQKYQAII 181 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK+++ SAT+D R + +APV GR+F Sbjct: 182 IDEAHERSLNIDFLLGYLKRILPS-RPDLKIIVTSATIDVARFSKHFNDAPVFEVSGRTF 240 Query: 182 PVERRYLPL---------PAHQRFDDAVAVATAEMLRQE-------SGSLLLFLPGVGEI 225 PVE RY PL A Q + + A ++ +E + +L+FLPG EI Sbjct: 241 PVEIRYQPLLLKSDSEEVDADQSMEQGIVDAVHTIIHEEKLSSFRGASDILVFLPGEREI 300 Query: 226 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 + E L + PLY LS ++Q+K I + G R++VL+TN+AETSLT+ GIR Sbjct: 301 RETAELLRREELRHTEVVPLYARLSSSEQQK-IFKSHSG-RRIVLSTNVAETSLTVPGIR 358 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 V+D R++R+ R+ + +L +++SQAS QRAGR GR+ GI + L + + A Sbjct: 359 YVIDPGVARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVADGICIRLYDEADYQARA 418 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLS 405 ++PEI +++L+ +++++ + S+++ P + R L LGA+ ERL+ Sbjct: 419 EFTDPEIFRTNLASVILQMANLRLGAVEKFSFVEMPDKRLINDGYRALNELGAINKERLT 478 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 G+++A L DP+L M+++A D+ +IA I+ Sbjct: 479 PIGRQLAKLPIDPKLGRMIIAA---DKLGVLNEIAIIV 513 >UniRef50_Q3JBJ6 ATP-dependent helicase HrpA n=3 Tax=Chromatiaceae RepID=Q3JBJ6_NITOC Length = 1281 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 160/435 (36%), Positives = 247/435 (56%), Gaps = 16/435 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 SLPV E+ A+ V+L TG+GK+T LP + L G+ G I +PRR+AA Sbjct: 53 SLPVIERREEIGAAIRNHQVVILCGETGSGKTTQLPKICLELGRGVAGMIGHTQPRRIAA 112 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ LN G VGY++R + V P+T ++++T+G+L Q D L +I Sbjct: 113 RTVANRIAKELNSDLGQIVGYKVRFHDQVSPSTYIKLMTDGILLAETQGDRFLDQYDTLI 172 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R Q +AP++ GR++ Sbjct: 173 IDEAHERSLNIDFLLGYLKQLLPK-RPDLKVIITSATIDTERFSQHFGQAPIIEVSGRTY 231 Query: 182 PVERRYLPLPAHQ-----RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE RY PL Q + + A E+ R G +L+FLPG EI+ E L Sbjct: 232 PVEIRYRPLCGEQETQERNLSEGILDAVDELSRLGPGDILVFLPGEREIRETAEALRKHH 291 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS +Q + P R++VLATN+AETSLT+ GI VVD R++ Sbjct: 292 PPHTEILPLYARLSSTEQNRVF--KPHSGRRIVLATNVAETSLTVPGIHYVVDPGLARLS 349 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ R+ + RL +++SQ+S QRAGR GR+ G+ + L ++E ++PE+L+++ Sbjct: 350 RYSVRSKVQRLPIEKISQSSANQRAGRCGRVATGVCIRLYSEEDFLGRPEFTDPEVLRTN 409 Query: 357 LSGLLMEL--LQWGCSDPAQMSWLDQPPVVNLLA-AKRLLQMLGALE-GERLSAQGQKMA 412 L+ +++++ LQ G + +LD PP+ ++ RLL LGA++ + L+ GQ++A Sbjct: 410 LASVILQMKSLQLGAVE--DFPFLD-PPLPKMINDGLRLLAELGAVDKAQNLTPLGQRLA 466 Query: 413 ALGNDPRLAAMLVSA 427 L DPR+ M+++ Sbjct: 467 RLPIDPRIGRMVLAG 481 >UniRef50_B8KHJ8 ATP-dependent helicase HrpA n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KHJ8_9GAMM Length = 1254 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 167/435 (38%), Positives = 249/435 (57%), Gaps = 10/435 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 S LPVA E+ AL V+++ TG+GK+T LP + L G +I +PRRLA Sbjct: 22 SDLPVAEHRQEIADALREHQVVIVAGETGSGKTTQLPKICLELGRGRLQRIGHTQPRRLA 81 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VAQR+AE + + G+ VGY++R Q +G T ++++T+G+L +QRD +L + Sbjct: 82 ARTVAQRIAEEVGQPLGELVGYQVRFQEILGDRTAVKLMTDGILLSEMQRDRDLRQYDTL 141 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK+L+ SAT+D R + APV+ GRS Sbjct: 142 IIDEAHERSLNIDFILGYLKRLLPR-RPDLKVLVTSATIDVGRFSEHFNGAPVIEVSGRS 200 Query: 181 FPVERRYLPLPAHQRFD--DAVAVATAEM---LRQESGSLLLFLPGVGEIQRVQEQLASR 235 +PV YLP + D VA E+ + G +L+FL G +I+ V QL Sbjct: 201 YPVTTHYLPRDSSNSEDLLRQVASVVKEVQAGIHGTPGDMLVFLSGERDIRDVARQLRGA 260 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 G DVL PLY LS +Q + +VVL+TN+AETS+T+ GIR V+D + R+ Sbjct: 261 AGLDVL--PLYARLSQGEQARVFGRGSARGLRVVLSTNVAETSVTVPGIRFVIDPGEARI 318 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +R+ RT + RL + VS+AS QR GR GR+ PGI L L +E ++PEI +S Sbjct: 319 SRYSYRTRVQRLPIEPVSRASADQRRGRCGRVGPGICLRLYTEEDYLNRPQFTDPEIKRS 378 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAAL 414 +L+ +++++LQ G D + +L+ P + RLL LGA+ + E+L+ G++MAA Sbjct: 379 NLAAVVLQMLQLGLGDITKFPFLEPPDSRLIRDGYRLLDELGAVNQREQLTRLGRRMAAF 438 Query: 415 GNDPRLAAMLVSAKN 429 DP L+ M+++A+ Sbjct: 439 PIDPSLSRMVLAAQE 453 >UniRef50_A4VNQ0 ATP-dependent helicase HrpA n=32 Tax=Proteobacteria RepID=A4VNQ0_PSEU5 Length = 1425 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 253/460 (55%), Gaps = 22/460 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 SLP+AA E+ AL+ ++++ TG+GK+T LP + L G++G I +PRRLAA Sbjct: 138 SLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQPRRLAA 197 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE L G+ VGY++R ++ T ++++T+G+L Q D L +I Sbjct: 198 RSVATRVAEELGAPLGELVGYQVRFEDQSTERTLIKLMTDGILLAETQHDRFLEKYDTII 257 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R + AP+V GR++ Sbjct: 258 VDEAHERSLNIDFLLGFLKTLLP-RRPDLKVIITSATIDLERFSEHFDGAPIVEVSGRTY 316 Query: 182 PVERRYLPLPAH-----QRFDDAVAV------------ATAEMLRQESGSLLLFLPGVGE 224 PVE Y PL A R +D + V A + Q G +L+FLPG E Sbjct: 317 PVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEIAAHERSVGQRPGDVLVFLPGERE 376 Query: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 I+ E L + PLY L+ +Q+K P P RK+VLATN+AETSLT+ GI Sbjct: 377 IRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPG--RKIVLATNVAETSLTVPGI 434 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 R V+D R++R+ R + RL + VSQAS QR GR GR+EPGI + L ++E Sbjct: 435 RYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEEDFLGR 494 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-R 403 A ++PEIL+++L+ +++++L D +++ P + LLQ L A+ E + Sbjct: 495 PAFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELSAVNRENQ 554 Query: 404 LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 L+ G+++A L DPRL ML+ A A +A+ L Sbjct: 555 LTPLGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASAL 594 >UniRef50_C9ZMN0 ATP-dependent RNA helicase, putative n=4 Tax=Trypanosoma RepID=C9ZMN0_TRYBG Length = 742 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 155/460 (33%), Positives = 254/460 (55%), Gaps = 19/460 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 ++LPV EL + VL TG+GK+T +P Q ++ + G ++ +PRR+AA Sbjct: 81 TTLPVYQRAKELTQNMRDHQVVLFVGETGSGKTTQVP-QFISEMELPGVVVCTQPRRIAA 139 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+A ++ + G+ VGYR+R ++ V T+L +T+G+L R D +LS + +V+ Sbjct: 140 MSIAVRVAAEMDVQLGEEVGYRVRFKSMVSDKTKLLYMTDGMLLREAFSDRDLSRISVVV 199 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER+++ D+ L +L + Q R D +L++MSATLD +R Q P+AP++ EGR + Sbjct: 200 VDEAHERTVETDVLLGVLRLLMQ-RRQDFRLVVMSATLDMERFQAYFPKAPLIQVEGRMY 258 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ-------EQLAS 234 V+ Y +P + V L + G +L FL G EI+R E L + Sbjct: 259 DVQVLYSTVPVKDYVEACVERVCDIHLNEPPGDILCFLTGEAEIERAVSRTKLKLEHLLA 318 Query: 235 RIGSDVL---------LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 G+ V + PLYG+L ++DQ + A + RK++ ATNIAETSLTI+GI Sbjct: 319 DDGNTVSSNGAQLLARVLPLYGSLGVDDQGRVFSNAGKNTRKIIFATNIAETSLTIDGIV 378 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 VVDC + + ++ + L+ +S+AS QR GRAGR PG L + Sbjct: 379 YVVDCGYHKQSLYNAEARVDYLLPAVISKASAEQRKGRAGRTRPGKCFRLFQQSDFSSFP 438 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RL 404 Q+ PE+L+S++ ++ LL+ ++P Q +++D P +++ A L + GA++ + +L Sbjct: 439 NQTHPEVLRSNMINTVLLLLKLDVTNPYQFAFIDPPSQQSVMDAYCQLSLFGAVDDDLQL 498 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE 444 + G+ MA D LA +L+ + AA AA I A+LE Sbjct: 499 TDFGRLMADFPVDACLARVLMRSAQYGCAADAAVIVAMLE 538 >UniRef50_A6VYA9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=A6VYA9_MARMS Length = 1308 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 161/459 (35%), Positives = 256/459 (55%), Gaps = 22/459 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 SLPVA E++ A+ V+++ TG+GK+T LP + L A GI G I +PRR+AA Sbjct: 81 SLPVATRADEIIKAIQDNQVVIIAGETGSGKTTQLPKMCLQAGRGIAGLIGHTQPRRIAA 140 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+++ L G+ VG+++R + T ++++T+G+L IQ+D L +I Sbjct: 141 RSVAERISDELQVNLGEQVGFQVRFSDESNEETLIKLMTDGILLAEIQQDKRLYKYDTII 200 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L V R DLK+++ SAT+D +R + AP++ GR++ Sbjct: 201 IDEAHERSLNIDFLLGYLKQVLAA-RPDLKVIVTSATIDVERFSEHFENAPIIEVSGRTY 259 Query: 182 PVERRYLPL-------------PAHQRFDDAVAVATAEMLRQE----SGSLLLFLPGVGE 224 PVE RY PL Q DAV + AE RQ +G +L+FLPG E Sbjct: 260 PVEIRYQPLLSKSDSEELDEDQSMEQGILDAVELLIAEE-RQSGYRGAGDILVFLPGERE 318 Query: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 I+ E L + PLY LS ++Q++ I + G R++VL+TN+AETSLT+ GI Sbjct: 319 IRDTAEILRRAELRSTEVLPLYARLSASEQQR-IFKSHSG-RRIVLSTNVAETSLTVPGI 376 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 R V+D R++R+ R+ + +L +++SQAS QRAGR GR+ GI + L +E Sbjct: 377 RYVIDPGLARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVADGICIRLYDEEDFNNR 436 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERL 404 ++PEI +++L+ +++++ + +++ P + R L LGAL ERL Sbjct: 437 PEFTDPEIFRTNLASVILQMANLKLGAVEKFPFVEMPEKRMINDGYRALTELGALHKERL 496 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 + G+++A L DP+L +L++A+ A I + L Sbjct: 497 TPIGRQLAKLPIDPKLGRILIAAEQHSVLKEVAIIVSAL 535 >UniRef50_Q7PT33 AGAP007212-PA n=4 Tax=cellular organisms RepID=Q7PT33_ANOGA Length = 1288 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 160/434 (36%), Positives = 241/434 (55%), Gaps = 14/434 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 SLP+ + +L+ A+ +++ TG+GK+T + Q LA G GKI +PRR+A Sbjct: 631 SLPIYKLRDDLIKAVTDNQILIVIGETGSGKTTQI-TQYLAESGFIARGKIGCTQPRRVA 689 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+AE + G VGY +R ++C T ++ +T+G+L R D +L ++ Sbjct: 690 AMSVAKRVAEEYGCRLGQEVGYTIRFEDCTSQETVIKYMTDGMLLRECLVDFDLKSYSVI 749 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL Q R +LKL++ SATLD + Q EAP+ GR+ Sbjct: 750 MLDEAHERTIHTDVLFGLLKQAVQK-RPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRT 808 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 FPVE Y P D ++ LR+ G +LLFL G EI E L R+ S Sbjct: 809 FPVEILYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTGQEEIDTACEILYERMKSLG 868 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 869 PDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVK 928 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA--QSEPEI 352 ++ +TG+ L+ +SQA+ QRAGRAGR PG + L E+A R PEI Sbjct: 929 QKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKAYRLYT-ERAYRDEMLPTPVPEI 987 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQ-GQKM 411 +++L+ +++L G +D ++D PPV +L+ A L L AL+ E L + G++M Sbjct: 988 QRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHSLSALDNEGLLTRLGRRM 1047 Query: 412 AALGNDPRLAAMLV 425 A +P L+ +L+ Sbjct: 1048 AEFPLEPNLSKLLI 1061 >UniRef50_B5JXZ9 ATP-dependent helicase HrpA n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JXZ9_9GAMM Length = 1300 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 168/494 (34%), Positives = 271/494 (54%), Gaps = 20/494 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LP+ A ++L A++ V+L TG+GK+T LP L L G+ G I +PRRLA Sbjct: 69 AQLPIVAARADILKAIEEHQVVVLCGETGSGKTTQLPKLCLELGRGVAGYIGHTQPRRLA 128 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE L + G VG+++R + V + ++++T+G+L Q D L + Sbjct: 129 ARSVAARIAEELKTELGQGVGFKVRFADKVSELSHIKLMTDGILLAETQGDRFLERYDTL 188 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L + + R DLK++I SAT+D +R + +AP++ GR+ Sbjct: 189 IIDEAHERSLNIDFLLGYIKRILPR-RPDLKVIITSATIDPERFSKHFNDAPILNVSGRT 247 Query: 181 FPVERRYLPLPAHQRFDD-------AVAVATAEMLRQESGSLLLFLPGVGEIQRVQ---- 229 +PVE Y PL D+ VA E ++ G +L+FLPG +I+ Q Sbjct: 248 YPVEVEYRPLVDLDSDDERETSLRQGVADCVDEAMQNGPGDILVFLPGERDIRDTQRFLE 307 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 + ASR G + PLYG LS +Q++ + G R++VL+TN+AETS+T+ GI V+D Sbjct: 308 KHFASRRGQSADILPLYGRLSNAEQQRIFKSS--GPRRIVLSTNVAETSVTVPGIVFVID 365 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 RV+R+ R+ + RL + +SQAS QR GR GR+ PGI L +++ ++ Sbjct: 366 TGLARVSRYSYRSKVQRLPIEAISQASANQRKGRCGRVAPGICYRLYSEDDFNARPEFTD 425 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--EGER--LS 405 PEIL+++L+ +++++ + Q +++ P + +LL LGA+ +G+R L+ Sbjct: 426 PEILRTNLAEVILQMESLRLGEIEQFPFIEAPDSRLISDGYKLLFELGAMSRQGKRHKLT 485 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDE-AATAAKIAAILEEPPRMGNSDLGVAFSRNQPA 464 + GQKM+ L DPRLA ML+++ ++ T +AA+ + PR D A Sbjct: 486 SLGQKMSRLPIDPRLARMLMASDRENCLEETLTLVAALSIQDPRERPHDHRQAADEAHQQ 545 Query: 465 WQQRSQQLLKRLNV 478 W+ + LN+ Sbjct: 546 WRDERSDFIALLNL 559 >UniRef50_A9GK92 ATP-dependent helicase HrpA n=2 Tax=Myxococcales RepID=A9GK92_SORC5 Length = 1263 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 173/448 (38%), Positives = 258/448 (57%), Gaps = 15/448 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAAR 62 LP++A + ++ A++ V+++ TG+GK+T LP LA G++ +I + +PRR+AA Sbjct: 43 LPISARVRDIARAIEAHQVVIVAGETGSGKTTQLPKICLAMGRGLSARIGVTQPRRIAAT 102 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+A+ L + G VGY++R + P T ++ +T+G++ IQ DP LSG +I+ Sbjct: 103 SVAARVAKELGVELGKEVGYKIRFSDRTSPATYVKYMTDGIVLAEIQGDPRLSGYDTLII 162 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L + R DL++++ SATL+ DR APV+ GR++P Sbjct: 163 DEAHERSLNIDFLLGYLKRLLPK-RPDLRVIVSSATLETDRFAAYFGGAPVIEVSGRTYP 221 Query: 183 VE---RRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIGS 238 VE RR P DAVA E+ + G +L+FLPG EI +L Sbjct: 222 VEVIHRR--PESGEAEVADAVAATVEEITSIDPRGDILVFLPGEREIHDTMAELTRHGLP 279 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 L PLYG L +DQ++ P R++VLATN+AETSLTI GI V+D RV R+ Sbjct: 280 HTTLLPLYGRLPQSDQQRVFQSLPG--RRIVLATNVAETSLTIPGIVYVIDSGLARVNRY 337 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA-AAQSEPEILQSDL 357 PRTG+T+L + +S+AS QR GRAGR++ G+ L EQ +RA A ++PEIL+ L Sbjct: 338 SPRTGVTQLQIEPISRASADQRKGRAGRVQSGVCFRLY-DEQDDRARPAYTDPEILRVGL 396 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSAQGQKMAALG 415 SG+++++ G +LD P + R+L+ LGAL+ GE L+ G+K+A L Sbjct: 397 SGVILQMKALGLGAIEDFPFLDAPSKRAVDEGYRVLEELGALDDAGE-LTDIGRKLARLP 455 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAIL 443 DPRL M++ +++ A IAA L Sbjct: 456 LDPRLGRMVLGGESEGALAEVLIIAAAL 483 >UniRef50_A1U107 ATP-dependent helicase HrpA n=4 Tax=Gammaproteobacteria RepID=A1U107_MARAV Length = 1312 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 169/493 (34%), Positives = 270/493 (54%), Gaps = 21/493 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LPV+ + ++ A++ V+++ TG+GK+T +P + L GI G I +PRR+A Sbjct: 85 AGLPVSDRVEDISDAINNHQVVIIAGETGSGKTTQIPKICLNLGRGIRGIIGHTQPRRIA 144 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+V+ R+AE L E G +GY++R + ++R++V+T+G+L +Q D L + Sbjct: 145 ARSVSSRIAEELGETVGQQIGYQVRFTDNTSESSRVKVMTDGILLAEVQHDRFLDRYDTL 204 Query: 121 ILDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 I+DE HERSL D L L +Q L R DLK++I SAT++ +R + EAPV+ G Sbjct: 205 IIDEAHERSLNIDFLLGYL---KQLLPKRPDLKVIITSATIEVERFSEFFNEAPVIEVSG 261 Query: 179 RSFPVERRYLPLPAH-----QRFDDAVAVATAEMLRQES------GSLLLFLPGVGEIQR 227 R+FPV+ RY PL Q + D V A E+ + E G +L+FLPG EI+ Sbjct: 262 RTFPVDIRYRPLVGDEDDRDQGWTDGVLSALDEIEQHERQEKQPPGDVLVFLPGEREIRA 321 Query: 228 VQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLV 287 + + L + PLY LS N ++ + +G R++VL+TN+AETSLT+ GIR V Sbjct: 322 LSKVLRHADLRHTEVLPLYSRLS-NQEQNRVFQGHKG-RRIVLSTNVAETSLTVPGIRYV 379 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ 347 +D R++R+ R+ + RL + +SQAS QRAGR GR+ PGI L + Sbjct: 380 IDTGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGRVAPGICFRLYDETDFLNRPEY 439 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSA 406 ++PEIL+++L+ +++++ G + +L+ P + +LL+ L A++ + R++ Sbjct: 440 TDPEILRTNLASVILQMATSGLGEIRHFPFLEAPDRRQVNDGYKLLEELSAVDDKRRVTR 499 Query: 407 QGQKMAALGNDPRLAAMLV-SAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW 465 G+ MA L DPRLA MLV SA+ A IA + + PR D A + + Sbjct: 500 LGRTMARLPLDPRLARMLVTSAEQGSLAEVLIVIAGLSVQDPRERPQDKQQAADQAHAPF 559 Query: 466 QQRSQQLLKRLNV 478 + LN+ Sbjct: 560 NDKESDFATLLNI 572 >UniRef50_Q4N5J8 RNA helicase, putative n=1 Tax=Theileria parva RepID=Q4N5J8_THEPA Length = 619 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 153/449 (34%), Positives = 241/449 (53%), Gaps = 9/449 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAA 61 SLP+ V + + ++L TG+GKST +PL L + K+++ +PRR+AA Sbjct: 5 SLPINLVKDLIFEKIKENQCLILVGSTGSGKSTSVPLWLYTSFTNPKQKLVVTQPRRVAA 64 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A+ +A L N + G TVG+ +R N +TR++ VT+G+L R DP LS +VI Sbjct: 65 ISLAKYVANLTNTELGTTVGFNVRFLNKSNESTRIKYVTDGILMRESISDPLLSKYSIVI 124 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERS+++D+ L ++ + R +LKL++MSAT+D++ + + + GR F Sbjct: 125 IDEVHERSIRSDILLGII-KLALTKRPELKLIVMSATIDSNVFNEFFQNSFTINVPGRLF 183 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PV+ Y P P + A+ L E+G +L+FLPG +I+ ++ L ++ Sbjct: 184 PVDIYYTPAPFEDYIEAAMISVLQINLSTETGDILVFLPGQEDIEILERLLKQKVKHLND 243 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 +++CPLY ALSL Q P RKVVLATNIAETSLTI GI+ V+D + Sbjct: 244 SMESLVICPLYSALSLERQNLVFKTTPPKSRKVVLATNIAETSLTIPGIKYVIDTGLVKQ 303 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +++P+ L S++S QRAGRAGR PG L + E+ + PEI Sbjct: 304 RKYNPKNNFESLTVNITSKSSAKQRAGRAGREGPGEIYRLYTLDSYEKMPQNTTPEIHLI 363 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 D S + ++L G D + ++D P +L+A L LGAL+ E L+ G+ MA + Sbjct: 364 DFSFVFLQLKMIGVKDIFEFPFIDPPDKGTILSAALNLYRLGALDSEGNLTEAGKMMAQI 423 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 P + +L+S+ + I +IL Sbjct: 424 PLLPMHSKLLISSFEFSCTSEILTIVSIL 452 >UniRef50_Q6AL39 Related to ATP-dependent helicase HrpA n=1 Tax=Desulfotalea psychrophila RepID=Q6AL39_DESPS Length = 1257 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 250/454 (55%), Gaps = 10/454 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKII-LLEPRRL 59 ++ LP+ E++TA+ ++++ TG+GK+T LP Q GK++ +PRRL Sbjct: 17 LTILPIDKHKDEIITAIKENQVIVIAGDTGSGKTTRLP-QYCLEVAQEGKLVGCTQPRRL 75 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA R+ E + + VGY++R + T+++ +T+GVL + D +L + Sbjct: 76 AAVSVAARVGEEVGR--SEEVGYKIRFHDYTTAKTKIKFMTDGVLLAETKSDRDLRKYSI 133 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I+DE HER+L D L L + R DLKL+I SAT+D + AP++ EGR Sbjct: 134 LIVDEAHERNLNIDFLLGYLKRLLPR-RPDLKLIITSATIDTASFAKHFNNAPLISIEGR 192 Query: 180 SFPVERRYLPLPAHQR--FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 +FP++ RY P+ + V + LR+ L+FLP +I+ E LA I Sbjct: 193 TFPIDLRYAPIADEDEDYLEHCTGVVSQLFLRERPADTLIFLPTEKDIRNCCEMLAKHI- 251 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQG-MRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 +V + PL+G L +DQR+ P PQG + K+V+ATN+AETS+T+ GIR V+D R+ Sbjct: 252 PNVEILPLFGRLQGSDQRRIFQPCPQGKIAKIVVATNVAETSITVPGIRYVIDSGLARMT 311 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 + R+ T L Q++S+AS QR GR GR+ G + L A+E + PEI +S+ Sbjct: 312 YYSVRSKTTSLPIQKISRASCDQRKGRCGRVSSGTCIRLFAEEDYLGRDEFTLPEIKRSN 371 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGN 416 L+ +L+++ DP + ++D P + LLQ LGA++G L+ +G+ MA L Sbjct: 372 LAEVLLQMSSLKLGDPNKFPFVDPPATSTIRDGYALLQELGAIKGYELTLRGKIMADLPI 431 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRM 449 DP ++ +L+ A ++ IAA L + PR+ Sbjct: 432 DPCISRILIEASSNSCLRETMIIAAALSVQDPRI 465 >UniRef50_C1DAE5 HrpA n=2 Tax=Betaproteobacteria RepID=C1DAE5_LARHH Length = 1290 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/439 (36%), Positives = 252/439 (57%), Gaps = 18/439 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 +LPV ELL A+D V++ TG+GK+T LP L L G G I +PRRLAA Sbjct: 74 ALPVNQKRDELLAAIDANQVVIVCGETGSGKTTQLPKLCLQLGRGTRGLIGHTQPRRLAA 133 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE L + G VG+++R + + ++++T+G+L Q D L +I Sbjct: 134 RSVASRIAEELGTQIGQGVGFKVRFTDRTSDQSFIKLMTDGILLAETQTDRYLEAYDTLI 193 Query: 122 LDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +DE HERSL D L L +Q L R DLK++I SAT+D +R + APV+ GR Sbjct: 194 IDEAHERSLNIDFLLGYL---RQLLPRRPDLKIIITSATIDAERFSRHFNGAPVIEVSGR 250 Query: 180 SFPVERRYLPLPAHQRFD------DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL- 232 ++PVE RY L D DA+ A E+ R SG +L+FLPG EI+ E L Sbjct: 251 TYPVEVRYRALGEKDEDDRDLAMEDAIVDAVDELARLGSGDILVFLPGEREIRDTAEALR 310 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +R+ + PL+ LS N+++ I G R++VLATN+AETSLT+ GIR V+D Sbjct: 311 KARLTVRYEVLPLFARLS-NEEQNRIFKGSNG-RRIVLATNVAETSLTVPGIRYVIDTGL 368 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R+ R+ PR + +L+ +++SQA+ QRAGR GR+ G+ + L A++ A ++PEI Sbjct: 369 ARIKRYSPRAKVEQLLVEKISQAAARQRAGRCGRVAAGVCIRLYAEDDFNARPAFTDPEI 428 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLA-AKRLLQMLGAL-EGERLSAQGQK 410 ++S+L+ +++ + + ++D PP L+A +L LGA+ E L+ G++ Sbjct: 429 VRSNLAAVILRMASLRLGAVVEFPFID-PPSARLIADGYDVLHELGAVSERGELTPLGRE 487 Query: 411 MAALGNDPRLAAMLVSAKN 429 +A + DP++ ML++A++ Sbjct: 488 LARIPVDPKIGRMLLAARD 506 >UniRef50_Q6A8Y5 ATP-dependent helicase HrpA n=3 Tax=Propionibacterium acnes RepID=Q6A8Y5_PROAC Length = 1361 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 171/482 (35%), Positives = 251/482 (52%), Gaps = 47/482 (9%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LP+AA E+ + V+++ TG+GK+T LP LA +I +PRR+AA Sbjct: 20 TDLPIAAHADEIADLIKHHQVVVVAGETGSGKTTQLPKICLALG--RRQIAHTQPRRIAA 77 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+AE + + G+ VGY++R +T L V+T+GVL I D +L +I Sbjct: 78 RSVAERVAEEMGVELGEQVGYQVRFTRRASSDTALTVMTDGVLLAEISHDRDLCAHDTII 137 Query: 122 LDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +DE HERSL D L L +Q L R DLK++I SAT+D R +APV+ GR Sbjct: 138 IDEAHERSLNIDFLLGYL---KQLLPRRPDLKVIITSATIDTARFSAHFDDAPVIEVSGR 194 Query: 180 SFPVERRYLPL--------------------------PAHQRFDD-------AVAVATAE 206 ++PVE RY PL P+ DD + A E Sbjct: 195 TYPVEVRYRPLDPSEQIRPDDEDDIDDEDELLHRPSAPSLTSPDDEVVDQVTGICRAVQE 254 Query: 207 MLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMR 266 + R+ESG +L+FL G EI+ E LA S+ + PL+ LS +Q + P R Sbjct: 255 LCREESGDILVFLAGEQEIRETAEALADLNLSNTEVLPLFARLSAAEQHRVF--TPHTGR 312 Query: 267 KVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGR 326 ++VLATN+AETSLT+ GIR V+D R++R+ RT + RL + VSQAS QRAGR GR Sbjct: 313 RIVLATNVAETSLTVPGIRYVIDPGTARISRYSVRTKVQRLPIEPVSQASANQRAGRCGR 372 Query: 327 LEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNL 386 + PGI + L ++ E +EPEIL+++L+ +++++ Q +++ P + Sbjct: 373 VAPGICIRLYSQTSFESRPEFTEPEILRTNLAAVILQMAQARLGAITDFPFVEAPDRSRI 432 Query: 387 LAAKRLLQMLGAL-----EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAA 441 RLL LGAL + RL+ G ++A + DPRL ML+ A I A Sbjct: 433 NDGIRLLDELGALKPGHRDASRLTKIGHQLARVPLDPRLGRMLLEGARQGSLAEVLVIVA 492 Query: 442 IL 443 L Sbjct: 493 AL 494 >UniRef50_B0JZ95 Dhx16 protein n=5 Tax=Fungi/Metazoa group RepID=B0JZ95_XENTR Length = 1016 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 162/455 (35%), Positives = 247/455 (54%), Gaps = 19/455 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NG-KIILLEPRRLA 60 SLPV +LL A+ +++ TG+GK+T +P L H NG KI +PRR+A Sbjct: 373 SLPVFPYRSDLLQAISDHQILIIEGETGSGKTTQIPQYLHEHGYTKNGLKIGCTQPRRVA 432 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V+ R+++ + K G+ VGY +R ++C T L+ +T+G+L R +P+L+ ++ Sbjct: 433 AMSVSARVSQEMGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVI 492 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ L+ D+ + R DLK+L+ SATL+ +R +APV GR Sbjct: 493 IIDEAHERTLHTDVLFGLIKDIAR-FRQDLKVLVASATLNTERFSSFFDDAPVFRIPGRR 551 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL---ASRIG 237 +PV+ Y P + V + Q G +L+FL G EI+ E L R+G Sbjct: 552 YPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIETCCEMLQERCRRLG 611 Query: 238 SDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 S + L+ P+Y L + Q K P P G RKVV+ATNIAETSLTI+GI V+D + Sbjct: 612 SKIAEMLVLPIYANLPSDMQAKIFEPTPPGARKVVIATNIAETSLTIDGIIYVIDPGFCK 671 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA----KEQAERAAAQSEP 350 ++ R+G+ LI S+AS QRAGRAGR+ G L K + E P Sbjct: 672 QKSYNARSGMESLIVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYKNEMEDTTV---P 728 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSAQG 408 EI +++L +++ L G +D ++D PP L+ A L LGAL GE L+ G Sbjct: 729 EIQRTNLGNVVLLLKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGE-LTKLG 787 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 ++MA L DP L+ ++++++ + IAA+L Sbjct: 788 RRMAELPVDPMLSKIILASEQYGCSEQILTIAAML 822 >UniRef50_C7ME24 ATP-dependent helicase HrpA n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7ME24_BRAFD Length = 1297 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 169/468 (36%), Positives = 256/468 (54%), Gaps = 45/468 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKII-LLEPRRLAA 61 LPV+ ++ A+ V+++ TG+GK+T +P LL G GK+I +PRR+AA Sbjct: 26 LPVSQRREDIQAAITEHQVVVIAGATGSGKTTQIPKMLLELGYGQGGKLIGHTQPRRIAA 85 Query: 62 RNVAQRLAELLNEKPGD-TVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 R+VAQR+A + EK G+ TVGY++R TRL+++T+G+L I RD L + Sbjct: 86 RSVAQRIAGEMGEKLGEGTVGYQVRFTRETSRGTRLKLMTDGILLAEIGRDRLLKRYDAI 145 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQ----MLPE-----A 171 I+DE HERSL D+ L L + R DLK++I SAT+D +R + +LP A Sbjct: 146 IIDEAHERSLNIDVILGYLRQILPQ-RPDLKIIITSATIDPERFAEHFAKVLPSGERRPA 204 Query: 172 PVVISEGRSFPVERRYLPL----------------PAHQRFDDAVAVATAEMLRQESGSL 215 P++ GR++PVE RY PL + A+ A E+ + G + Sbjct: 205 PIIEVSGRTYPVEIRYRPLVLEPEMEDDDELEDVHSIERDLTQAIIDAVDELSAEGPGDM 264 Query: 216 LLFLPGVGEIQRVQEQLASRIGSD--------VLLCPLYGALSLNDQRKAILPAPQG-MR 266 L+FLPG EI+ + E L + + V + PL+G LS DQ+K P G R Sbjct: 265 LVFLPGEREIREISEALTTHLSRGTRGRGALPVEVLPLFGRLSAQDQQKIFSPPKAGTYR 324 Query: 267 KVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGR 326 +V+L+TN+AETSLT+ GI V+D R++R+ RT + RL + +SQAS QR+GR+GR Sbjct: 325 RVILSTNVAETSLTVPGITYVIDSGLARISRYSQRTKVQRLPIEPISQASADQRSGRSGR 384 Query: 327 LEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNL 386 PGI++ L ++E E +EPEIL++ L+ +++ + G D +++ P + Sbjct: 385 TAPGIAIRLYSQEDFEGRPEFTEPEILRTSLASVVLLMTSLGLGDVEAFPFVEPPANRAI 444 Query: 387 LAAKRLLQMLGALE-------GERLSAQGQKMAALGNDPRLAAMLVSA 427 RLL LGA+E G RL+ G+ +A DPR+A ML+ A Sbjct: 445 TDGVRLLDELGAIEDAPGEPGGRRLTRIGRSLARFPLDPRMARMLIEA 492 >UniRef50_Q0F3B4 ATP-dependent helicase HrpA n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3B4_9PROT Length = 1289 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 167/467 (35%), Positives = 254/467 (54%), Gaps = 22/467 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LPV+ + A+ V+++ TG+GK+T +P + L G+ G I +PRR+A Sbjct: 69 AELPVSEKRETIAAAIAKHQVVIIAGETGSGKTTQIPKICLELGRGMAGLIGHTQPRRIA 128 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE + G+ VGY++R + G + ++++T+G+L IQ DP L + Sbjct: 129 ARSVATRIAEEMGSPIGEHVGYKVRFSDHTGTDAYIKLMTDGILLAEIQSDPLLLAYDTI 188 Query: 121 ILDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 I+DE HERSL D L L +Q L R DLK++I SAT++ R EAPV+ G Sbjct: 189 IIDEAHERSLNIDFLLGYL---KQLLPKRRDLKIIITSATINTGRFSAFFNEAPVIEVSG 245 Query: 179 RSFPVERRYLPLPAH---------QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 R+ PVE RY PL Q DAV A L G +L+FLPG EI+ V Sbjct: 246 RTHPVEIRYRPLQGDDDDRDRDLPQAIMDAVDEAA---LIDRFGDILIFLPGEREIRAVT 302 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 E L + + PL LS +Q + R++VLATN+AETSLT+ GIR V+D Sbjct: 303 EALHQHKMTQTEVIPLLSRLSPAEQDRVF--QKHTGRRIVLATNVAETSLTVPGIRFVID 360 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++R+ RT + RL + VSQAS QRAGR GR+ GI + L ++E + Q++ Sbjct: 361 SGLARISRYSTRTKVQRLPIEPVSQASANQRAGRCGRVAAGICIRLYSEESFDNRPEQTD 420 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQG 408 PEI +++L+ +++++ G D A ++D P + LL+ L A++ +R L+ G Sbjct: 421 PEIRRTNLASVILQMSNLGLGDVAAFPFMDAPEKPAIRDGYLLLEELQAVDSKRELTLIG 480 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDL 454 +K+ L DPR+ ML+ A ++ IA+ L + PR D+ Sbjct: 481 KKLVRLPVDPRIGRMLLQADSERSLHEVLIIASALSVQDPRTRPMDM 527 >UniRef50_D0W5V2 ATP-dependent helicase HrpA n=3 Tax=Neisseria RepID=D0W5V2_NEICI Length = 1417 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 167/489 (34%), Positives = 264/489 (53%), Gaps = 16/489 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 ++LPV L E+ A+ ++ TG+GK+T LP + L G G I +PRRLA Sbjct: 57 NTLPVHEKLEEIKKAIAENQVTIICGETGSGKTTQLPKICLELGRGAAGLIGHTQPRRLA 116 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA+R+AE L + G VGY++R + + ++++T+G+L Q D L+ + Sbjct: 117 ARSVAERIAEELKSEIGSAVGYKVRFTDHTSRDACVKLMTDGILLAETQTDRYLAAYDTI 176 Query: 121 ILDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 I+DE HERSL D L L +Q L R DLK++I SAT+D +R Q APV+ G Sbjct: 177 IIDEAHERSLNIDFLLGYL---KQLLPRRPDLKVIITSATIDAERFSQHFNSAPVLEVSG 233 Query: 179 RSFPVERRYLPLPAHQRFD------DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 R++PVE Y PL + D D + A E+ G +L+FLPG EI+ E L Sbjct: 234 RTYPVEILYRPLTSKDEDDAEVELTDVIVDAADELAGHGEGDILVFLPGEREIREAAEAL 293 Query: 233 -ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 S + + + PL+ LS +Q K P R++VLATN+AETSLT+ GI+ V+D Sbjct: 294 RKSTLRRNDEILPLFARLSHAEQHKIFHPTG-AKRRIVLATNVAETSLTVPGIKYVIDTG 352 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 RV R+ R + +L +++SQA+ QR+GR GR+ G+ + L ++E ++PE Sbjct: 353 LARVKRYSARAKVEQLHVEKISQAAARQRSGRCGRVSAGVCIRLFSEEDFNNRPEFTDPE 412 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQK 410 I++S+L+ +++ + D A +L+ P + ++L LGA+ E L+ G++ Sbjct: 413 IVRSNLAAVILRMASLNLGDVAAFPFLEMPDSRYINDGFQVLLELGAVNEHNGLTRLGEQ 472 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRS 469 MA L DP++A +L++AK D A IA+ L + PR + A ++ + + Sbjct: 473 MAHLPIDPKIARILLAAKKHDCMAEILVIASALSIQDPRERPLEARDAAAKAHERFTDKQ 532 Query: 470 QQLLKRLNV 478 L LN+ Sbjct: 533 SDFLAYLNI 541 >UniRef50_A5EVC9 ATP-dependent helicase HrpA n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVC9_DICNV Length = 1302 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 155/414 (37%), Positives = 243/414 (58%), Gaps = 13/414 (3%) Query: 23 VLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVG 81 V++S TG+GK+T LP + L G G+I +PRR+AAR+VA R+AE L+ G VG Sbjct: 90 VIISGETGSGKTTQLPQICLELGLGAGGQIAHTQPRRIAARSVAARIAEELSVPLGAAVG 149 Query: 82 YRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLD 141 Y++R P+T ++++T+G+L DP L ++I+DE HERSL D L L Sbjct: 150 YQVRFDEQCSPDTVIKLMTDGLLLAETLTDPYLYQYEVIIIDEAHERSLNIDFLLGYLHR 209 Query: 142 VQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVA 201 + + R DLKL+I SAT+D ++ + +AP + GR++PVE RY PA + + Sbjct: 210 LLEK-RRDLKLIITSATIDAEKFARHFHQAPQINVSGRTYPVEIRYREPPADSDLSEEIL 268 Query: 202 VATAEMLRQESGSLLLFLPGVGEIQRVQEQL--ASRIGSDVLLCPLYGALSLNDQRKAIL 259 A E+ ++ G +L+FLP +I+ L A +D+L PL+G LSL DQ+ Sbjct: 269 AAIDELDCEQRGDILVFLPTERDIRETATFLSRAQLPATDIL--PLFGRLSLADQQAVFR 326 Query: 260 PAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQ 319 P Q R++VLATN+AETSLT+ I+ V+D R++R+ RT RL + +SQAS Q Sbjct: 327 PKNQ--RRIVLATNVAETSLTVPRIKYVIDTGTARMSRYSLRTKTQRLPIEAISQASANQ 384 Query: 320 RAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCS----DPAQM 375 RAGR GRL G+ + L ++E + +EPEIL+++L+ +++++L + D A+ Sbjct: 385 RAGRCGRLSAGVCIRLYSEEDFQNRPEFTEPEILRTNLAAVILQMLLLNLAQNGDDIARF 444 Query: 376 SWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAK 428 ++D P + + RLL L A++ RL+ G+K+A L DPR A ++ +A+ Sbjct: 445 PFVDPPEMRQINDGYRLLFELKAVDNHNRLTDLGRKIARLPIDPRFARIVFAAE 498 >UniRef50_C1RH11 ATP-dependent helicase HrpA (Fragment) n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RH11_9CELL Length = 1120 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 174/473 (36%), Positives = 255/473 (53%), Gaps = 36/473 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV+A E+ A+ V+++ TG+GK+T LP + L G G+I +PRR+AAR Sbjct: 145 LPVSARRQEIADAIRDHQVVVVAGETGSGKTTQLPKIALELGRGRAGQIGHTQPRRIAAR 204 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA+R+A+ L G VGY++R + +T ++V+T+G+L IQRDP L +I+ Sbjct: 205 TVAERIADELGVPLGGVVGYQVRFTDESSDSTLVKVMTDGILLAQIQRDPMLRMYDTLII 264 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----------A 171 DE HERSL D L L + R DLKL+I SAT+D+DR + A Sbjct: 265 DEAHERSLNIDFILGYLTRLLP-QRPDLKLVITSATIDSDRFARHFGSPATAAAEDRTPA 323 Query: 172 PVVISEGRSFPVERRYLPLPAHQRFD----DAVAVATAEMLRQESGSLLLFLPGVGEIQR 227 PVV GR++PVE RY PL D + A E++ G +L+FL G EI+ Sbjct: 324 PVVEVSGRTYPVEIRYQPLSPDDGPDRDLVTGITEAVDELMAAGPGDVLVFLSGEREIRD 383 Query: 228 VQEQLASRIGSDVL---------LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 ++ L +G V + PLY LS +QR+ R+V+LATN+AETS Sbjct: 384 AEDALRGSLGPRVTDPRHPDGVEIVPLYARLSAAEQRRVF--EAHTTRRVILATNVAETS 441 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ G+R VVD R++R+ T + RL + VSQAS QR+GR+GR+ PGI++ L ++ Sbjct: 442 LTVPGVRYVVDPGTARISRYSKATKVQRLPIEPVSQASANQRSGRSGRVAPGIAIRLYSE 501 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGC----SDPAQMSWLDQPPVVNLLAAKRLLQ 394 E E +EPEIL++ L+ ++++++ G + ++D P V + LL Sbjct: 502 EDFESRPEYTEPEILRTSLASVILQMIAVGVVTSPDEVVDFPFVDPPDVRAVRDGVALLT 561 Query: 395 MLGALEGE----RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 L ALE + RL+ G+ +A L DPRLA M+V A A IAA L Sbjct: 562 ELHALEVQGGRTRLTETGRALAQLPIDPRLARMVVEAGRRGVAREVLVIAAAL 614 >UniRef50_Q4N829 RNA helicase, putative n=2 Tax=Theileria RepID=Q4N829_THEPA Length = 974 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 145/433 (33%), Positives = 243/433 (56%), Gaps = 14/433 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP+ ELL+A+ +++ TG+GK+T +P Q L G + G I + +PRR+AA Sbjct: 309 LPIYYYRTELLSAIKKYKTLIVVGETGSGKTTQIP-QYLHEVGYSRAGVIGITQPRRVAA 367 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA R+++ LN K G TVGY +R ++ NT+++ +T+G+L R +P L +++ Sbjct: 368 MSVATRVSKELNVKMGSTVGYCIRFEDYTSSNTKIKYMTDGILLREFASNPTLENYSVIM 427 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER+L D+ L+ D+ + R+D +L+I SATL+ ++ AP+ GR + Sbjct: 428 IDEAHERTLHTDVIFGLVKDLIR-YRNDFRLIISSATLEAEKFALYFDNAPIFKIPGRRY 486 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 PV+ Y P D ++ L Q G +L+FLPG EI+ +QE+L +R+ + Sbjct: 487 PVQIYYTKTPEANYLDASIITILQIHLTQPIDGDILVFLPGQQEIEYIQEELIARLKNRK 546 Query: 239 ---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ +Y +L + Q K P P+ RKV+L+TNI+ETS+T++ I V+D ++ Sbjct: 547 DIRELIILSIYSSLPSDMQNKIFEPTPENSRKVILSTNISETSITLDNIVYVIDTGFCKL 606 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS-EPEILQ 354 + + P+TGL LI S+A+ QR+GRAGR+ G L K ++ + EPEI + Sbjct: 607 SLYSPKTGLDSLIVVPCSKANANQRSGRAGRVRAGHCFRLYTKLSYDKEMEDNHEPEIKR 666 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSAQGQKMA 412 +LS +++ L G D ++D P +L+ + L+ LG L GE L+ G+ M+ Sbjct: 667 VNLSSVVLLLKSIGIDDLLNFDFMDPPTPESLINSLELIYSLGCLNDSGE-LTKLGKIMS 725 Query: 413 ALGNDPRLAAMLV 425 L DP + L+ Sbjct: 726 ELPLDPMYSKSLL 738 >UniRef50_C0QAN7 HrpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAN7_DESAH Length = 1333 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 162/498 (32%), Positives = 266/498 (53%), Gaps = 29/498 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LP+ E++ AL V++S TG+GK+T +P + A G GKI +PRR+AA Sbjct: 77 LPITGKKDEIIHALKFHRVVIISGETGSGKTTQIPKFCMAAGRGAAGKIGCTQPRRIAAI 136 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA R+AE L + PG VG+++R + ++ ++++T+G+L Q DP L+ +I+ Sbjct: 137 TVAARIAEELGQLPGGVVGHKIRFDDRSSKDSIIKIMTDGILLAETQHDPFLNEYDTIIV 196 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L +L ++ + R DL L++ SAT+D ++ + APV+ GR FP Sbjct: 197 DEAHERSLNIDFTLGILRNLVRK-RPDLTLVVTSATIDTEKFSKAFDNAPVIEVSGRMFP 255 Query: 183 VERRYLPLPAH-------QRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLAS 234 VE RY P+ Q + +A A A E+ RQ +G +L+F+P +I+ E + Sbjct: 256 VELRYAPIDDPDNDDLDDQGYVEAAAGAVDEIQRQSRTGDILVFMPTERDIEETIELIQG 315 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGM-RKVVLATNIAETSLTIEGIRLVVDCAQE 293 R L+ PL+ LS DQ + +G+ RK++++TN+AETSLTI GI+ VVD Sbjct: 316 RKYPGTLVLPLFARLSARDQARVF---SRGVGRKIIVSTNVAETSLTIPGIKYVVDSGLA 372 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R+ + PRT T L +S++S QR GR GR+ GI + L +++ E + PEIL Sbjct: 373 RILHYSPRTRTTALPVSPISRSSANQRMGRCGRVANGICIRLFSEDAFESRPLFTSPEIL 432 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE----------GER 403 +S+L+ +++ ++ + A ++D P ++ L LGA++ G Sbjct: 433 RSNLAEVILRMISLKLGNVAAFPFIDPPAPKSIKDGFDTLVELGAIQQRRGKNNQRGGYA 492 Query: 404 LSAQGQKMAALGNDPRLAAMLVSAKND---DEAATAAKIAAILEEPPRMGNSDLGVAFSR 460 L+ +G+ MA + DP+L+ +L+ A ++ DEA +I + PR D + Sbjct: 493 LTTRGRVMAKIPVDPKLSRILLEADHNGCLDEAVVIVSALSIAD--PRQRPKDKVQHADQ 550 Query: 461 NQPAWQQRSQQLLKRLNV 478 A++ S + LN+ Sbjct: 551 MHAAFKDPSSDFVTLLNI 568 >UniRef50_C8RTL0 ATP-dependent helicase n=4 Tax=cellular organisms RepID=C8RTL0_CORJE Length = 1325 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 166/472 (35%), Positives = 256/472 (54%), Gaps = 37/472 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKII-LLEPRRLAAR 62 LPV+ ++ A++ V+++ TG+GK+T +P L K+I +PRR+AAR Sbjct: 50 LPVSERREDIKQAIEDNQVVIIAGETGSGKTTQIPKMCLELGRGRTKVIGHTQPRRIAAR 109 Query: 63 NVAQRLAELLNEKPGDT---VGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 +VA+R+AE L+++ GD VGY++R + + +T ++++T+GVL IQRD L Sbjct: 110 SVAERIAEELDQEIGDDTSLVGYKIRFDDTISKHTAVKLMTDGVLLNEIQRDRLLRDYDT 169 Query: 120 VILDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEA-----P 172 +I+DE HERSL D L L +Q L R DLK++I SAT+D + + +A P Sbjct: 170 IIVDEAHERSLNIDFLLGYL---KQLLPKRPDLKVIITSATIDPESFAKHFADANGSPAP 226 Query: 173 VVISEGRSFPVERRYLPLPAHQRFD-------------DAVAVATAEMLRQESGSLLLFL 219 ++ GR++PVE RY PL + D + A E++R G +L F Sbjct: 227 IIEVSGRTYPVEIRYRPLVTERENPKTGEVIEVETDPLDGLVGACRELMRAGDGDILCFF 286 Query: 220 PGVGEIQRVQEQLASRIGS-----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNI 274 G EI+ E L V + PL+G LS +Q + P+ R++VLATNI Sbjct: 287 SGEREIRDAAEALEGEFAGAGGARKVDVLPLFGRLSNAEQHRVFHTGPR--RRIVLATNI 344 Query: 275 AETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLH 334 AETSLT+ GI VVD R++R+ RT + RL + +SQAS QR+GR+GR+ GI++ Sbjct: 345 AETSLTVPGIHYVVDTGYARISRYSNRTKVQRLPVEPISQASAKQRSGRSGRIADGIAIR 404 Query: 335 LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQ 394 L ++E E ++PEIL++ LS +++ + G D + +L P ++ LLQ Sbjct: 405 LYSEEDFEARPEFTDPEILRTHLSSVILSMAALGLGDIERFPFLQAPDSKSIRDGVALLQ 464 Query: 395 MLGALEGER---LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 LGAL + L+ G+ MA + DPRLA MLV+ ++ A I + L Sbjct: 465 ELGALASTKEAALTPIGRDMARIPTDPRLARMLVAGHANNIIEPIAVIVSAL 516 >UniRef50_A8IHD9 DEAH-box nuclear pre-mRNA splicing factor n=2 Tax=Viridiplantae RepID=A8IHD9_CHLRE Length = 689 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 159/437 (36%), Positives = 234/437 (53%), Gaps = 13/437 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-----HPGINGKII-LLEPR 57 LP A +LL L ++L TG+GK+T +P LLA G G I + +PR Sbjct: 41 LPAWAARDKLLALLQQHRTLVLVGETGSGKTTQIPQFLLAAKFGKSSGSKGACIAVTQPR 100 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AA VA+R+AE + K G VGY +R ++ P TR++ +T+G+L R DP LS Sbjct: 101 RVAAMTVARRVAEEMGTKIGQQVGYAIRFEDVTSPATRIKYMTDGLLLREALVDPLLSRY 160 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 +V++DE HER++ D+ L L+ VQ DD +L++MSATLD R P A + Sbjct: 161 RVVVIDEAHERTVHTDVLLGLIKGVQARRGDDFRLVVMSATLDAARFVDYFPGAVAALVR 220 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL--ASR 235 GR FPV+ Y P D A+ + G +L+FL G EI + L A+ Sbjct: 221 GRQFPVQVLYTARPEDNYLDAAINATLQVHGEEPEGDVLVFLTGQDEIDSAERLLKAAAA 280 Query: 236 IGS---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +G ++L+ P+Y AL Q K PAP G RK +LATNIAETS+TI G+R V+D Sbjct: 281 VGGRPRELLVLPIYAALPPEQQMKVFEPAPPGTRKAILATNIAETSITIPGVRYVIDTGH 340 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 + ++ + GL L VSQA QR+GRAGR PG + L + + AA + PEI Sbjct: 341 VKARDYNAKLGLESLAVVPVSQAQARQRSGRAGREGPGKAYRLYTEADFSQLAATTPPEI 400 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSAQGQK 410 + +L+ ++++L G D ++D PP +L + LL LGAL+ G+ G + Sbjct: 401 TRCNLASVVLQLKAMGIDDVLGFDFMDPPPRTAILRSLELLFALGALDNSGKLTEEVGLR 460 Query: 411 MAALGNDPRLAAMLVSA 427 ++ L DP +L++A Sbjct: 461 LSRLPVDPMFGRVLLAA 477 >UniRef50_B9WE17 Pre-mRNA-splicing factor ATP-dependent RNA helicase, putative n=2 Tax=Candida RepID=B9WE17_CANDC Length = 866 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 246/462 (53%), Gaps = 16/462 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKII-LLEPRRL 59 SLPV + E L ++ +++ TG+GK+T LP Q L G N +II +PRR+ Sbjct: 229 SLPVYSYREEFLKIINENQTLIVVGETGSGKTTQLP-QYLYEAGYSQNNRIIACTQPRRV 287 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQ-NCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 AA +VA+R+A+ + K G+ VGY +R NC T ++ VT+G+L R +DP L Sbjct: 288 AATSVAKRVADEMQVKLGEQVGYNIRFDDNCKDGITMIKYVTDGMLLREFLQDPTLEKYS 347 Query: 119 LVILDEFHERSLQADLALALLLDV--QQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS 176 ++++DE HER+L ++ L+LL D+ ++DLK++I SAT++ ++ + AP++ Sbjct: 348 VIMIDEAHERTLSTEILLSLLKDIIMTTTRKNDLKIIIASATINAEKFSKFFNNAPILNI 407 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVA-VATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GR FPV+ Y P A+ + M + G +L+FL G EI+ ++E L Sbjct: 408 PGRRFPVKIHYTKQPEANYIQAAITTIFQIHMTQPLPGDILVFLTGQDEIETMEEILHDS 467 Query: 236 I---GSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 I G + ++C +Y L Q+K P RK+VLATNIAETS+TI+GI V+D Sbjct: 468 IVKLGDQINPMMVCSIYANLPQELQQKIFQQTPTNTRKIVLATNIAETSITIDGISYVID 527 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQS 348 + ++P TG+ L+ S+AS QRAGRAGR+ PG L K Sbjct: 528 PGYVKQNVYNPITGMESLVVVPCSRASADQRAGRAGRVGPGKCFRLFTKWSFYNELDLNQ 587 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQ 407 +PEI + +L+ +++ LL G +D ++D P ++ A LL LGAL + +L+ Sbjct: 588 QPEIQRVNLTSVILLLLSLGINDLLGFEFMDPPSKQAIIKALNLLYALGALNSQGKLTKI 647 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM 449 G+KM+ DP ++++ D I A+L E + Sbjct: 648 GKKMSEFPLDPIFTKCILTSDKFDNTKQIISIIAMLNESSNL 689 >UniRef50_A2D7A5 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2D7A5_TRIVA Length = 660 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 155/446 (34%), Positives = 247/446 (55%), Gaps = 8/446 (1%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAA 61 SLP+ +++ + P +L TG GKST +P L+ + G ++ + +PRR++A Sbjct: 44 SLPIWKSKKQIIELIANNPTTILVGETGCGKSTQVPQFLVDSFELKGCRVAVTQPRRVSA 103 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+A N + G VGY +R N P + ++ VT+G+L R I D +LS +VI Sbjct: 104 TSLAARVAAERNCEVGSYVGYSVRFDNKSSPKSYIKYVTDGMLLREILVDNDLSAYNVVI 163 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++Q DL + LL D+Q R DLKL++MSATL+ P++ EGR+F Sbjct: 164 LDEIHERTVQTDLLIGLLRDLQ-ARRSDLKLILMSATLNCKLFVDFFNGPPIIHVEGRTF 222 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQ-ESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 V +Y P + +A A ++ + + G L+FL G EI+ V E L + Sbjct: 223 KVAIKYTDEP-QTDYIEATTTAVLQLNEECDKGDFLVFLTGQEEIEEVMETLKTEETYPP 281 Query: 241 L-LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 L + PLY AL + Q++ P +G RKV+L+TNIAETS+TI GI+ V+D +V ++ Sbjct: 282 LKVLPLYAALPMYQQQEVFNPVDEGTRKVILSTNIAETSVTIPGIKYVIDSGLVKVKTYN 341 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +G+ L ++A + QRAGRAGR GI+ L ++ Q EI ++DLS Sbjct: 342 PVSGIEILGVTPCAKAQVVQRAGRAGRESEGIAFRLFTEDSFFDLKDQPVAEIRRADLSS 401 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--EGERLSAQGQKMAALGND 417 ++++L G +P +L++PP + A+ + L LGAL +GE LS G+ MA + Sbjct: 402 VVLQLFALGVKNPMTFGFLERPPTEMIQASIQQLWSLGALTPQGE-LSDDGKVMANFPMN 460 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAIL 443 P++ +L+ A +A + A++ Sbjct: 461 PKMTKILLLACQSGCGGSALTLLAMM 486 >UniRef50_Q6P404 DEAH (Asp-Glu-Ala-His) box polypeptide 38 n=9 Tax=Eukaryota RepID=Q6P404_DANRE Length = 1258 Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 155/452 (34%), Positives = 242/452 (53%), Gaps = 11/452 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP+ AV +LL + V++ TG+GK+T L Q L G G + +PRR+AA Sbjct: 563 LPIFAVRQQLLNIIRDNNIVIVVGETGSGKTTQL-TQYLHEDGYTSYGMVGCTQPRRVAA 621 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E +N G+ VGY +R ++C T ++ +T+G+L R R+ +L VI Sbjct: 622 MSVAKRVSEEMNSNLGEEVGYAIRFEDCTSEKTMIKYMTDGILLRESLRESDLDHYSAVI 681 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ LL +V R DLKL++ SAT+D+D+ P+ GR+F Sbjct: 682 MDEAHERSLNTDVLFGLLREVV-SRRSDLKLIVTSATMDSDKFASFFGNVPIFHIPGRTF 740 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PV+ + P + AV A L G +L+F+PG +I+ +Q+ R+ Sbjct: 741 PVDILFSKTPQEDYVEAAVKQALQIHLSGMVGDILIFMPGQEDIEVTSDQIVERLADLEN 800 Query: 239 --DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + + P+Y L + Q K AP G+RK ++ATNIAETSLT++GI VVD ++ Sbjct: 801 APALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVVDSGYCKLK 860 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEILQS 355 F+PR G+ L +SQA+ QRAGRAGR PG L + + + PEI ++ Sbjct: 861 VFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCYRLYTQSAFKNEMLTTTIPEIQRT 920 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 +L+ +++ L G D ++D PP N+L + L +LGAL+ L+ G+ M Sbjct: 921 NLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGALTPTGRLMVEF 980 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEP 446 DP L+ ML+ + + +A I ++L P Sbjct: 981 PLDPALSKMLIVSCDMSCSADILIIVSMLSVP 1012 >UniRef50_B9Z2A4 ATP-dependent helicase HrpA n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z2A4_9NEIS Length = 1314 Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 153/437 (35%), Positives = 246/437 (56%), Gaps = 15/437 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 +LPV E+ A+ V++ TG+GK+T +P + L G+ G I +PRRLAA Sbjct: 75 ALPVNQKREEIRAAIAKHQVVIICGETGSGKTTQIPKICLELGRGVYGLIGHTQPRRLAA 134 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+A+ L + G VG+++R + + + ++++T+G+L Q D L +I Sbjct: 135 RSVATRIAQELGSELGAHVGFKVRFTDKLSDKSVIKLMTDGILLAETQTDRYLEAYDTII 194 Query: 122 LDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +DE HERSL D L L +Q L R DLK+++ SAT+D +R + APV+ GR Sbjct: 195 IDEAHERSLNIDFLLGYL---KQMLPRRPDLKVIVTSATIDAERFARHFDGAPVIEVSGR 251 Query: 180 SFPVERRYLPLPAHQR------FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 +FPVE RY PL +DA+ A E+ R G +L+FLPG EI+ E+L Sbjct: 252 TFPVEVRYRPLKERDEDEREVEMEDAIVDAVDEISRHGPGDMLVFLPGEREIRDTAEKLR 311 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + PL+ LS DQ+K P G R++VLATN+AETSLT+ GI+ V+D Sbjct: 312 KSGIRGYEILPLFARLSNEDQQKIF--KPSGGRRIVLATNVAETSLTVPGIKYVIDTGLA 369 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R+ R+ PR + +L +++SQA+ QRAGR GR+E G+ + L ++ A ++PEI+ Sbjct: 370 RLNRYSPRAKVEQLQVEKISQAAARQRAGRCGRVEAGVCVRLYGEDDFNARPAFTDPEIV 429 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMA 412 +S+L+ +++ + +L+ P + ++L LGA+ E L+ G+++A Sbjct: 430 RSNLAAVILRMAALRLGRVDDFPFLEAPSSRLIADGYQVLTELGAVDEKSELTPVGKELA 489 Query: 413 ALGNDPRLAAMLVSAKN 429 L DP++ ML++A++ Sbjct: 490 RLPIDPKIGRMLLAARD 506 >UniRef50_A4S4Y0 Predicted protein n=3 Tax=Mamiellales RepID=A4S4Y0_OSTLU Length = 679 Score = 241 bits (616), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 167/494 (33%), Positives = 263/494 (53%), Gaps = 28/494 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKII-LLEPRRLA 60 SLP+ L+ + + V++ TG+GK+T +P + + NG +I + +PRR+A Sbjct: 41 SLPIYRAKDRLMEEIRKSETVIIIGETGSGKTTQIPQYVYEDMTLTNGLMIGVTQPRRVA 100 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V++R+A+ G VGY +R ++ TR++ +T+G+L R DP LS G++ Sbjct: 101 AVSVSRRVADETGTAHGTLVGYAIRFEDVSSEETRIKFLTDGMLLREAVGDPLLSKYGVI 160 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDL------------KLLIMSATLDNDRLQQML 168 ++DE HER+LQ D L + VQ+ R+ L ++++MSATL+ + Sbjct: 161 MIDEAHERTLQTDFLLGTIKGVQRRRRESLGEDQYGRALPPLRVIVMSATLEASSFSKFF 220 Query: 169 PEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQ-- 226 APV+ S GR+FPVE Y P D A+ + +G +L+FL G EI+ Sbjct: 221 DGAPVIYSRGRTFPVEMFYTEEPEEDYLDAAMWTVLQVNEEEAAGDVLVFLTGQEEIESL 280 Query: 227 -RVQEQLASRIGSDVL---LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 R+ + AS + S+VL + L+ AL +Q K P P G RKVVLATNIAETSLTI Sbjct: 281 GRMLREKASELPSNVLKLNVVLLFAALPPEEQMKVFEPTPLGTRKVVLATNIAETSLTIN 340 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GIR VVD ++ PR+G+ L+ ++Q+ QRAGRAGR PG L +E Sbjct: 341 GIRYVVDSGLSKLRTHHPRSGVDELLVTPIAQSQAQQRAGRAGREAPGKCFRLYTEEIMP 400 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE 402 +PE+L+++LSG++++L D ++D PP LL + LL L AL+ + Sbjct: 401 SLEKYVKPELLRTNLSGVVLQLKAMQVDDILSFPFIDPPPKEALLRSLELLYSLDALDDD 460 Query: 403 -RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN 461 +L+ G+KMA +P A +++A+ + A + A+L M ++D FSR Sbjct: 461 GKLNDVGKKMARFPLEPMAARCVIAAEIE---GCAIETLAVLS----MLSTDSVFQFSRE 513 Query: 462 QPAWQQRSQQLLKR 475 + ++ LKR Sbjct: 514 ADGQKNVARHKLKR 527 >UniRef50_Q482P9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=Q482P9_COLP3 Length = 1375 Score = 241 bits (615), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 155/458 (33%), Positives = 246/458 (53%), Gaps = 37/458 (8%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LP++ ++ A+D V+++ TG+GK+T +P + L G++G I +PRR+AAR Sbjct: 99 LPISENAAQISAAIDANQVVIIAGETGSGKTTQIPKICLELGRGVDGLIGHTQPRRIAAR 158 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA R+AE L K G+ VGY++R + V + ++++T+G+L +QRD L +I+ Sbjct: 159 TVANRIAEELGTKLGEQVGYKVRFNDQVSEQSYIKLMTDGILLAEMQRDRLLLKYDTIII 218 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVISE 177 DE HERSL D L L + R DLKL+I SAT+D R + AP++ Sbjct: 219 DEAHERSLNIDFILGYLKQILIK-RPDLKLIITSATIDPQRFAKHFSSKNGLPAPIIEVS 277 Query: 178 GRSFPVERRYLPLPAHQRFDD------------AVAVATAEMLRQESGSLLLFLPGVGEI 225 GR+FPVE RY PL DD + A E+ +G +L+FL G EI Sbjct: 278 GRTFPVEMRYRPLNDRAVIDDDDQSPQEVDIISGILSAVDELSDCGNGDILVFLNGEREI 337 Query: 226 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 + L + PLY L++++Q + P R +VLATN+AETSLT+ GI+ Sbjct: 338 RDTAAALVKANLRHTNVLPLYARLTVSEQNQIF--KPHSGRNIVLATNVAETSLTVPGIK 395 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 V+D R++R+ RT + RL + VSQAS QR+GR GR+ GI + L +++ + A Sbjct: 396 YVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRSGRCGRVSEGICIRLYSEDDYKSRA 455 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE----- 400 ++PEIL+++L+ +++++ D A +++ P N+ RLL+ + A+E Sbjct: 456 EFTDPEILRTNLATVILQMHALDLGDIANFPFVEAPDNRNITDGVRLLEEIAAVESIENA 515 Query: 401 -----------GERLSAQGQKMAALGNDPRLAAMLVSA 427 +L+ G+ +A DPRLA M+VS+ Sbjct: 516 DKNAKGKASSTATQLTKSGRLLAKFPIDPRLAKMVVSS 553 >UniRef50_A7AWE8 RNA helicase, putative n=2 Tax=Piroplasmida RepID=A7AWE8_BABBO Length = 1156 Score = 241 bits (615), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 162/460 (35%), Positives = 253/460 (55%), Gaps = 23/460 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI----NGKIILL---E 55 SLP+ A+ ELL A+ +++ TG+GKST +P Q LA G +G+ +++ + Sbjct: 498 SLPIFALRDELLQAVQENDILIVVGETGSGKSTQIP-QYLAESGYTSGSDGESMVIGCTQ 556 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRR+AA +VA+R++E + + G VGY +R ++C +T ++ +T+G+L R + +DP L Sbjct: 557 PRRVAAMSVAKRVSEEVGCRLGQEVGYCIRFEDCTTKDTVIKFMTDGMLLREVLQDPLLE 616 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVI 175 ++LDE HER++ D+ ALL + R++ KL++ SATL+ ++ +A + Sbjct: 617 QYACIMLDEAHERTIATDVLFALLKNCCSK-RENFKLIVTSATLEAEKFSTYFNDASIFS 675 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GR FPVE + + ++ L + +G +LLFL G EI L R Sbjct: 676 IPGRMFPVEILHTTDQESDYMEASLITVLNIHLNEPAGDILLFLTGQEEIDVACRTLHER 735 Query: 236 IGS-------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 + +++ P+Y AL Q P P G RK V+ATNIAE SLTI+GI V+ Sbjct: 736 MKRLESMSPPPLIILPVYAALPGEMQGAIFEPTPPGCRKCVIATNIAEASLTIDGIFYVI 795 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA-- 346 D +V R++PRTG+ L+ +SQAS QRAGRAGR PG L E A R+ Sbjct: 796 DPGFAKVKRYNPRTGMESLVVVPISQASAKQRAGRAGRTGPGKCYRLYT-EDAYRSEMLP 854 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSA 406 + PEI +++L+ +++ L G +D ++D+PPV L+ A L LGAL+ E L Sbjct: 855 TAVPEIQRTNLANVVILLKAMGINDFLNFDFMDKPPVETLIDALDNLYHLGALDDEGLLT 914 Query: 407 Q-GQKMAALGNDPRLAAMLVSAKN---DDEAATAAKIAAI 442 + G+KMA DP LA ML+++ + DE T + +I Sbjct: 915 RLGRKMAEFPMDPNLAKMLLTSVDLECSDEVITIVSMLSI 954 >UniRef50_B2GLW1 ATP-dependent RNA helicase HrpA n=7 Tax=Bacteria RepID=B2GLW1_KOCRD Length = 1418 Score = 241 bits (615), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 171/499 (34%), Positives = 260/499 (52%), Gaps = 77/499 (15%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV+A ++++A+ V+++ TG+GK+T LP L G G I +PRR+AA Sbjct: 58 NLPVSARREDIMSAIRENQVVVVAGETGSGKTTQLPKMCLELGLGERGLIGHTQPRRIAA 117 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+A L E+ G TVGY++R + VG ++R++++T+G++ I DP LS +I Sbjct: 118 RSVAERIAHELGERVGATVGYQVRFTSEVGRDSRIKLMTDGIMLAEISHDPTLSRYNAII 177 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-------PEA--- 171 +DE HERSL D L L + R DLK++I SAT+D R + PEA Sbjct: 178 IDEAHERSLNIDFLLGYLRRLLPQ-RPDLKVVITSATIDPQRFAEHFAQPDPEHPEAEPV 236 Query: 172 --PVVISEGRSFPVERRYLPLPAHQRFD--------------------DAVAVATAEMLR 209 PV+ GR++PVE RY PL + D DAV A E+ R Sbjct: 237 PAPVIEVSGRTYPVEIRYRPLTQERSGDGGPDEEDTGDGLADEDRDPIDAVCDAVVELSR 296 Query: 210 QESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC-----PLYGALSLNDQRKAILPAPQG 264 + G +L+F G EI+ Q+ L I S L PL+G LS+ +Q + + Sbjct: 297 EPRGDILVFFAGEREIRDAQDALQKVIDSHRSLAGTQILPLFGRLSMAEQNRVF--SQSS 354 Query: 265 MRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRA 324 R++VLATN+AETSLT+ GI+ VVD R++R+ RT + RL +R+SQAS QR+GR+ Sbjct: 355 HRRIVLATNVAETSLTVPGIKYVVDPGTARISRYSARTKVQRLPIERISQASAKQRSGRS 414 Query: 325 GRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGC----SDPAQMSWLDQ 380 GR G+ + L ++E E ++PEIL+++L+ ++++++ G D ++ + Sbjct: 415 GRTSDGVCIRLYSEEDFESRPEFTDPEILRTNLAAVILQMISVGVVREPGDILDFPFVQK 474 Query: 381 PPVVNLLAAKRLLQMLGALEGERLSAQ--------------------------------G 408 P + LLQ LGAL G SA+ G Sbjct: 475 PDPRAVKDGVVLLQELGALRGPGASAEHDDAASPPARRSRGGRRGRGRKGGARGPLTRTG 534 Query: 409 QKMAALGNDPRLAAMLVSA 427 + +AAL DPRL M+V A Sbjct: 535 EILAALPVDPRLGRMIVEA 553 >UniRef50_B6K0W8 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K0W8_SCHJY Length = 653 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 181/589 (30%), Positives = 276/589 (46%), Gaps = 67/589 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG--INGKII-LLEPRRLA 60 LP+A ELL ++ ++ TG GKST L Q L G +GK I EPR++ Sbjct: 25 LPIARFRRELLYLIENHQVTVVIGSTGCGKSTQLT-QYLYESGWAESGKCIACTEPRKVV 83 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 +++AQR+AE + G+ GY M ++C T+++ +T+G+L + + DP L+ ++ Sbjct: 84 VKSLAQRVAEEMGCTLGEECGYGMSFESCTSKTTKVKYITDGLLLQEMFIDPLLTQYSVI 143 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----EAPVVIS 176 +LDE HER++ DL L LL + + R DL++++ SATLD ++L++ Sbjct: 144 MLDEVHERTIATDLLLCLLKKILKQ-RSDLRIIVASATLDAEKLEEYFKVDQLSCTTFHL 202 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATA-EMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 E R FPV+ YL P ++A+ V ++ +L+FL G EI ++L + Sbjct: 203 ESRLFPVDVFYLSTPTENYLENAIEVCSSINKTAPADDDILVFLSGRAEIDECVKRLETA 262 Query: 235 ---RIGS--DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 IGS ++ PLY L+L++Q + QG RKVV ATNIAE S+++EGI V+D Sbjct: 263 SLRNIGSAPQMVALPLYSGLTLDEQMRVFQKVEQGSRKVVFATNIAEASISVEGITYVID 322 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 C E+V ++P T L+ +SQAS QRAGRAGR +PG L + A+S Sbjct: 323 CGYEKVRVYNPYNRSTALVKTSISQASADQRAGRAGRTKPGKCFRLYTEAAFSALKAKSS 382 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSAQ 407 PE+ SDL L+ L G + +S+LD PP V +AA L LGAL+ G Sbjct: 383 PELTHSDLIQPLLFLKAMGIKNIVNLSFLDNPPTVQFMAALEELYFLGALDEMGHLTRPL 442 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL---------EEPPRMGNSDLGVAF 458 G MA PRL+ L++A I +IL NS A Sbjct: 443 GYSMAEFPLHPRLSKTLLTAAKFGCVQEVLNICSILTITTNLFIKRSSAEYFNSFYKFAV 502 Query: 459 S-----------------RNQPAW-----------------QQRSQQLLKRLNVRGGE-- 482 + + W QQR QQ L++ V Sbjct: 503 EEGDLLTQLNAFHAYLKQKRESRWCSNHCLNAQSLLQAEQVQQRLQQYLRKFGVYATSRK 562 Query: 483 -ADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 D + I + +A+R+ ++G Y+ G+ +D + L HE Sbjct: 563 PTDKTNILKCFLASHYSYVAKRQ-RNGSYKTPEGLNVYIDKDSVL--HE 608 >UniRef50_C2KSU4 HrpA family ATP-dependent helicase n=3 Tax=Mobiluncus RepID=C2KSU4_9ACTO Length = 1292 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 169/493 (34%), Positives = 256/493 (51%), Gaps = 56/493 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV E+L A+ +++S TG+GK+T LP + L G NG I +PRRLAAR Sbjct: 11 LPVTEARAEILDAMRHHQVIVISGATGSGKTTQLPKMCLEVGRGTNGIIGHTQPRRLAAR 70 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA R+A ++E G TVGY++R + VG +TR++++T+G+L + +DP+L +I+ Sbjct: 71 TVATRIAAEMDETLGQTVGYQVRFRQNVGADTRIKLMTDGILLSEMSQDPQLRRYDTLII 130 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-PEAPVVISEGRSF 181 DE HERSL D L L + + +R DL ++I SAT+D+ R + PV+ GR+F Sbjct: 131 DEAHERSLNIDFILGYLQRLVK-IRPDLLVIITSATIDSQRFATAFGVDTPVIEVAGRTF 189 Query: 182 PVERRYLPL-----PAH---------------------------QRFDDAVAV--ATAEM 207 PVE RY PL P H Q D + A E+ Sbjct: 190 PVEIRYRPLVTEVSPGHLESCAIEPSLNPEKSLEIKETEVDVVDQEIDQVTGILRAVDEL 249 Query: 208 LRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVL-------------LCPLYGALSLNDQ 254 + G +L+FL G +I+ L +G + + PLY LS Q Sbjct: 250 VEAGPGDILVFLAGEADIRDTAAALKGHLGHRFVEPDSKSNVPGAIEVLPLYSRLSEAAQ 309 Query: 255 RKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQ 314 + AP +R++VLATN+AETSLT+ GI V+D R++R+ +T + RL + +SQ Sbjct: 310 QSIF--APHSLRRIVLATNVAETSLTVPGIVYVIDPGVARISRYSNKTRVQRLPIEPISQ 367 Query: 315 ASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQ 374 AS QRAGR GR PGI + L +++ +EPEI ++ LS +++++ G + A Sbjct: 368 ASANQRAGRCGRTCPGICIRLYSQQDFLSRPEYTEPEIQRTSLSAVILQMASLGLGEVAD 427 Query: 375 MSWLDQPPVVNLLAAKRLLQMLGALEGE----RLSAQGQKMAALGNDPRLAAMLVSAKND 430 +LD P ++ L LGAL+ R++ G+K+A L DPRLA +L++A Sbjct: 428 FPFLDPPSPRSVTDGVLELSQLGALDTRKKPVRITRLGRKIARLPLDPRLARILLAADEL 487 Query: 431 DEAATAAKIAAIL 443 A+ A + A L Sbjct: 488 GVASEAVIVVAAL 500 >UniRef50_C4Y9K0 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y9K0_CLAL4 Length = 1131 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 163/452 (36%), Positives = 250/452 (55%), Gaps = 15/452 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKII-LLEPRRLA 60 LPV A+ +LL+A+ V++ TG+GK+T + +Q L + KII +PRR+A Sbjct: 466 LPVYAMREQLLSAVRDNQFVIVVGETGSGKTTQI-VQYLYEENFHRGDKIIACTQPRRVA 524 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A+ + G VGY +R + P TR++ +T+G+L R DP++S +V Sbjct: 525 AESVAKRVAQEVGCPLGQEVGYTIRFDDRTSPATRIKYMTDGMLQREALLDPQMSKYAVV 584 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ ALL + DL++L SATLD D+ + PV+ GR+ Sbjct: 585 MLDEAHERTVATDVLFALLKKAARA-NPDLRVLATSATLDADKFSRYFGGCPVLHVPGRT 643 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 FPVE Y P A+ + ++SG +L+FL G EI E L +RI + Sbjct: 644 FPVEIMYSREPEPDYVAAALDCVMQIHVAEDSGDILVFLTGQDEIDTCCEALEARIKTLG 703 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++L+ P Y AL + Q + PAP G RKVVLATNIAETS+TI+GIR VVD + Sbjct: 704 RAVPELLVLPAYSALPPDQQARIFEPAPPGARKVVLATNIAETSITIDGIRYVVDPGFVK 763 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ--SEPEI 352 + +DPR G+ L+ +SQA QR+GRAGR PG L E+A R + + PEI Sbjct: 764 LNAYDPRLGMDSLVVSPISQAQANQRSGRAGRTAPGKCFRLYT-EEAFRTEMRPNTVPEI 822 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKM 411 + +L ++ L G D + ++D PP + A + L +L AL E L++ G++M Sbjct: 823 QRQNLEHTILMLKAMGIDDVLRFEFMDPPPAPTTVQALKELYVLDALDENGHLTSMGRRM 882 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 A +P LA ++++ + A+ + A+L Sbjct: 883 ADFPMEPALAKTVLASVDLSCASDVLSVVAML 914 >UniRef50_B5JKC1 ATP-dependent helicase HrpA n=5 Tax=Bacteria RepID=B5JKC1_9BACT Length = 1500 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 160/494 (32%), Positives = 259/494 (52%), Gaps = 22/494 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL--AHPGINGKIILLEPRRLAA 61 LP++ E+++A+ ++L+ TG+GK+T +P LL + KI +PRR+AA Sbjct: 26 LPISQRRDEIVSAIQAHQTIVLTGETGSGKTTQIPKMLLDAGYARSGKKIACTQPRRVAA 85 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E L + G VG ++R + TR++ +T+G+L I DP + VI Sbjct: 86 LSVAKRVSEELGVEFGQEVGAKIRFTDQTSKKTRVKFMTDGMLLTEIHADPLMRDYDAVI 145 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK++I SAT+D D+ AP++ GR + Sbjct: 146 IDEAHERSLNIDFLLGHLNQLR-ARRPDLKIVITSATIDTDKFSTAFDHAPIIEVSGRVY 204 Query: 182 PVERRYLPL------PAHQRFDDAVAVATAEMLRQ--ESGSLLLFLPGVGEIQRVQEQLA 233 PV+ Y PL + + +A +T + + SG +L FLP +I+ + L Sbjct: 205 PVDIIYAPLDELLEDSGDYTYLEGIAESTQRIQDEFGPSGDILAFLPTEKDIREAMDLLE 264 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R G + + P +G LS DQ++ +P+ RK++LATNIAETSLTI GIR V+D Sbjct: 265 DRFGRRLEIIPCFGRLSNADQQRIFQTSPK--RKLILATNIAETSLTIPGIRFVIDTGLA 322 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R++R++PR RL ++SQ+S QR+GR GR+ GI + L +++ + S PEI Sbjct: 323 RISRYNPRGRTKRLPITKISQSSANQRSGRCGRVADGICIRLYSEKDYQSRDIYSTPEIQ 382 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--------EGERLS 405 +++L+ +++ +L ++D P + A +LLQ LGAL E + L+ Sbjct: 383 RANLADVILRMLASRLGHVETFPFIDPPTPAAITAGYQLLQELGALKPPRTQNPEPKTLT 442 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPA 464 G+++A L DP + ML+ A + IA+ L + PR D A + Sbjct: 443 QTGRQLARLPADPTVGRMLLEANRHNVTHEVLVIASALSIQDPRERPMDREAAARQAHAQ 502 Query: 465 WQQRSQQLLKRLNV 478 + L LN+ Sbjct: 503 FDHPHSDFLTLLNI 516 >UniRef50_P24384 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=10 Tax=Saccharomycetaceae RepID=PRP22_YEAST Length = 1145 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 155/453 (34%), Positives = 249/453 (54%), Gaps = 15/453 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 +LPV A+ EL+ A+ +++ TG+GK+T + Q L G + G I +PRR+A Sbjct: 482 TLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQIT-QYLDEEGFSNYGMIGCTQPRRVA 540 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+AE + K G VGY +R ++ GP+TR++ +T+G+L R DPE+S ++ Sbjct: 541 AVSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPDTRIKYMTDGMLQREALLDPEMSKYSVI 600 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ ALL R +LK+++ SATL++ + + P++ G++ Sbjct: 601 MLDEAHERTVATDVLFALLKKAAIK-RPELKVIVTSATLNSAKFSEYFLNCPIINIPGKT 659 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 FPVE Y P + A+ + + G +L+FL G EI E L R+ + Sbjct: 660 FPVEVLYSQTPQMDYIEAALDCVIDIHINEGPGDILVFLTGQEEIDSCCEILYDRVKTLG 719 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++L+ P+Y AL Q K P P+G RKVV ATNIAETS+TI+GI VVD + Sbjct: 720 DSIGELLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAK 779 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEIL 353 + ++ R G+ +LI +SQA QR GRAGR PG L + ++ PEI Sbjct: 780 INIYNARAGIEQLIVSPISQAQANQRKGRAGRTGPGKCYRLYTESAFYNEMLENTVPEIQ 839 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 + +LS ++ L G +D + ++D PP +L A L L +L+ E +L+ G++M+ Sbjct: 840 RQNLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMS 899 Query: 413 ALGNDPRLAAMLVSAKND---DEAATAAKIAAI 442 DP L+ L+S+ ++ DE T + ++ Sbjct: 900 LFPMDPTLSRSLLSSVDNQCSDEIVTIISMLSV 932 >UniRef50_C5CA12 ATP-dependent helicase HrpA n=5 Tax=Micrococcaceae RepID=C5CA12_MICLC Length = 1367 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 167/478 (34%), Positives = 255/478 (53%), Gaps = 55/478 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LPVA E++ A+ V+++ TG+GK+T LP LA G G I +PRR+AAR Sbjct: 30 LPVAERREEIMAAIRDHQVVIVAGETGSGKTTQLPKMCLALGLGEAGSIGHTQPRRIAAR 89 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R+A+ L E+ G TVGY++R TR++V+T+G+L I DP+L ++I+ Sbjct: 90 SVAERIAQELGEEIGQTVGYQVRFTAQTSKATRVKVMTDGILLAEIPHDPQLRRYSVIIV 149 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE------------ 170 DE HERSL D L L ++ R DLK++I SAT+D +R + Sbjct: 150 DEAHERSLNIDFLLGYLRNLLP-QRPDLKVIITSATIDPERFARHFGRSLAAGEDHADAV 208 Query: 171 ----------APVVISEGRSFPVERRYLPLPAHQRFD----------------DAVAVAT 204 AP++ GR++PVE RY PL D DA+ A Sbjct: 209 EADDGGRVVPAPIIEVSGRTYPVEIRYRPLTEEPSPDDPEDDADDAAETRDPLDAIGDAV 268 Query: 205 AEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC-----PLYGALSLNDQRKAIL 259 E+ + G +L+FLPG EI+ + L + L PL+G LS+ +Q + Sbjct: 269 LELAAEPPGDILVFLPGEREIREAADHLTGVVAGTTRLAGTEILPLFGRLSMAEQHRVFG 328 Query: 260 PAPQGMRK-VVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMT 318 A G+R+ +VLATN+AETSLT+ GI+ V+D R++R+ RT + RL +RVSQAS Sbjct: 329 RAGAGVRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASAN 388 Query: 319 QRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCS----DPAQ 374 QRAGR+GR GI++ L ++E ++PEIL++ L+ +++++L G + D + Sbjct: 389 QRAGRSGRTSDGIAIRLYSEEDYLSRPEFTDPEILRTSLASVILQMLSLGVARTPGDVKE 448 Query: 375 MSWLDQPPVVNLLAAKRLLQMLGALE--GER---LSAQGQKMAALGNDPRLAAMLVSA 427 ++ P + L LGALE G R ++ G+++A L DPRL M++ A Sbjct: 449 FPFVQPPDGRQVTDGAATLTELGALEAGGARAGTITRVGRRLARLPVDPRLGRMILEA 506 >UniRef50_Q92620 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 n=55 Tax=Fungi/Metazoa group RepID=PRP16_HUMAN Length = 1227 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/431 (34%), Positives = 234/431 (54%), Gaps = 11/431 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP+ AV ELLT + V++ TG+GK+T L Q L G G I +PRR+AA Sbjct: 532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQL-TQYLHEDGYTDYGMIGCTQPRRVAA 590 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + G+ VGY +R ++C NT ++ +T+G+L R R+ +L +I Sbjct: 591 MSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAII 650 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ LL +V R DLKL++ SAT+D ++ P+ GR+F Sbjct: 651 MDEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTF 709 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI----- 236 PV+ + P + AV + L G +L+F+PG +I+ +Q+ + Sbjct: 710 PVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELEN 769 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + + P+Y L + Q K AP G+RK ++ATNIAETSLT++GI V+D ++ Sbjct: 770 APALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLK 829 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA-AAQSEPEILQS 355 F+PR G+ L +SQA+ QR+GRAGR PG L + + + PEI ++ Sbjct: 830 VFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRT 889 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 +L+ +++ L G D Q ++D PP N+L + L +LGAL+ L++ G+ M Sbjct: 890 NLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEF 949 Query: 415 GNDPRLAAMLV 425 DP L+ ML+ Sbjct: 950 PLDPALSKMLI 960 >UniRef50_Q759Y3 ADR140Cp n=2 Tax=Saccharomycetaceae RepID=Q759Y3_ASHGO Length = 709 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 166/453 (36%), Positives = 241/453 (53%), Gaps = 13/453 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA---HPGINGKIILLEPRRL 59 +LPV ++ L+ P +L TG+GKST LP LLA G I + +PRR+ Sbjct: 59 TLPVYRHQQSIMEHLNSNPVTILIGETGSGKSTQLPQLLLAQLKEEDKKGAIAVTQPRRV 118 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVG 118 AA ++A R+A+ GD VGY +R +C P+ TRL+ +T+G+L R + +D L Sbjct: 119 AAVSLATRVAQEHGCNLGDEVGYSVRFDSCAHPSRTRLKYLTDGMLLRELIQDKNLRKYR 178 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V++DE HER++ DL L L + + R DL++L+MSATL D+ APV+ EG Sbjct: 179 YVVIDEAHERTILTDLILGFLKQLLRTTRPDLRVLVMSATLQGDKFSAFFDGAPVLFVEG 238 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPG-------VGEIQRVQEQ 231 R FPVE RYL P D V ++ G LL F+PG VG + ++ E Sbjct: 239 RKFPVEIRYLSQPCEDVVDAVVRCCVQINSGEQLGDLLCFMPGQEEIDKAVGVLAKISEH 298 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L + L PLY AL +Q K LP RK++L+TNIAETS+TI G++ VVD Sbjct: 299 LDPGVPRITAL-PLYAALPPAEQAKVFLPLKGFRRKIILSTNIAETSVTIAGVKYVVDTG 357 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 + + + GL L+T +S+AS +QRAGRAGR G L + E+ QSEPE Sbjct: 358 LRKCKVWRHQLGLATLLTVPISKASASQRAGRAGRESAGKCFRLYREADYEQLPGQSEPE 417 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQK 410 I++ D + L+ L Q G D +WL+ P +++ + L LGAL+ ++ G+K Sbjct: 418 IVRCDATAPLLMLKQIGVDDLLNWTWLEHPGRDSIVQGLQELYQLGALDDSGAITDDGRK 477 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 MA L P L+ +L+ A+ + I A L Sbjct: 478 MALLPLAPHLSRVLLEARRNHCLPAVLDIVACL 510 >UniRef50_Q5KGT3 Pre-mRNA splicing factor, putative n=7 Tax=Dikarya RepID=Q5KGT3_CRYNE Length = 1261 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 152/452 (33%), Positives = 244/452 (53%), Gaps = 11/452 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLAA 61 LP AV EL+ + +++ TG+GK+T L Q L G NG I +PRR+AA Sbjct: 558 LPAFAVREELMGMIRDHQVLVVVGETGSGKTTQLG-QFLYEDGYCANGMIGCTQPRRVAA 616 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + G+TVGY +R ++C +T+++ +T+GVL R + +L ++I Sbjct: 617 MSVAKRVSEEMECTLGETVGYAIRFEDCTSKDTKIKFMTDGVLLRESLNEGDLDRYSVII 676 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HERSL D+ + LL + R DLKL++ SAT++ ++ Q A GR+F Sbjct: 677 LDEAHERSLSTDILMGLLRKILT-RRRDLKLIVTSATMNAEKFSQFFGNAATYTIPGRTF 735 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PVE + P D A+ L G +L+F+ G +I+ + + R+ Sbjct: 736 PVEIFHSKSPCEDYVDSAIKQVLQIHLSSSQGDILVFMTGQEDIECCCQVIEERLSQLDD 795 Query: 239 --DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + + P+Y + + Q K P P G RKVV+ATNIAETSLT++GI VVDC ++ Sbjct: 796 PPPLAVLPIYSQMPADLQAKIFQPTPDGRRKVVVATNIAETSLTVDGILYVVDCGYSKLK 855 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQS 355 ++P+ G+ L +SQA+ QRAGRAGR PG L + A + PEI ++ Sbjct: 856 VYNPKVGMDALQITPISQANCGQRAGRAGRTGPGFCYRLYTETAYLNELFASNIPEIQRT 915 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 +L+ ++ L G + + ++D PP N+L + L +LGAL+ L++ G+KM+ Sbjct: 916 NLANTVLLLKSLGVKNLLEFDFMDPPPQENILNSMYQLWVLGALDNVGNLTSIGRKMSDF 975 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEP 446 +P LA ML+ + + ++ I ++L P Sbjct: 976 PMEPSLAKMLIVSVDYQCSSEMLTIVSMLSVP 1007 >UniRef50_B7GWG2 ATP-dependent helicase HrpA n=17 Tax=Acinetobacter RepID=B7GWG2_ACIB3 Length = 1294 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 150/448 (33%), Positives = 247/448 (55%), Gaps = 30/448 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV L+ A+ ++++ TG+GK+T LP + +LA G+ G I +PRRLAAR Sbjct: 69 LPVTQYTDRLIEAIQKHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGMIGHTQPRRLAAR 128 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +V+QR+AE + EK G+++G+++R ++ + ++T+G+L + D LS +I+ Sbjct: 129 SVSQRIAEEVGEKLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIII 188 Query: 123 DEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 DE HERSL D + L +Q L R DLK+++ SATLD +R AP+ EGRS Sbjct: 189 DEAHERSLNIDFIMGYL---KQLLPKRPDLKVIVTSATLDVNRFSNYFNNAPIFEVEGRS 245 Query: 181 FPVERRYLPLPAHQ--------------RFDDAVAVATAEML-------RQESGSLLLFL 219 +PVE RY P+ AV A E E +L+F Sbjct: 246 YPVEVRYRPISEMNIGGSDDDEFDDFEENLPRAVVQAVEECFADAEEKGHPEHADILIFS 305 Query: 220 PGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSL 279 EI+ +QE L + PLY L++++Q+K P+ +G R++++ATN+AET+L Sbjct: 306 STEQEIRELQETLQKYGPRHTEILPLYARLAVSEQQKIFSPSGKG-RRIIIATNVAETAL 364 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 T+ IR V+D R++R++ R+ + RL + +SQA+ QR GR GR+ PG+ + L ++E Sbjct: 365 TVPNIRYVIDSGFARISRYNYRSRVQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEE 424 Query: 340 QAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL 399 +EPEI +++L+ +++++ G + +++ P + ++LL LGAL Sbjct: 425 DFLSRPEFTEPEIKRTNLASVILQMQSLGLGELENFDFIEPPDFRLVNDGRKLLIELGAL 484 Query: 400 EGER--LSAQGQKMAALGNDPRLAAMLV 425 ++ L+ GQ MA + DPRLA M+V Sbjct: 485 NEKKNELTKVGQMMARMPIDPRLARMIV 512 >UniRef50_C7QZ06 ATP-dependent helicase HrpA n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZ06_JONDD Length = 1435 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 168/493 (34%), Positives = 259/493 (52%), Gaps = 55/493 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 SLPV+A + AL ++++ TG+GK+T +P + L G G+I +PRR+AA Sbjct: 56 SLPVSAQRERIAQALREHQVIIVAGETGSGKTTQIPKIALELGRGRAGQIGHTQPRRIAA 115 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+A+ L + G VGY++R + +T ++V+T+G+L IQRDP+L +I Sbjct: 116 RSVAERIADELGTQIGKIVGYQVRFTDESSEDTLVKVMTDGILLAQIQRDPQLLAYDTLI 175 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----------- 170 +DE HERSL D L L ++ R DLK++I SAT+D+ R + Sbjct: 176 IDEAHERSLNIDFLLGYLTNLLPQ-RPDLKVIITSATIDSARFAEHFASPGPNGERGPDA 234 Query: 171 --------APVVISEGRSFPVERRYLPLPAH---------QRFDD------AVAVATAEM 207 APV+ GR++PVE RY PL R +D ++ AT E+ Sbjct: 235 VASGLATPAPVIEVSGRTYPVEIRYRPLDGEALGVADGQGNRSNDDPDLMTSLCAATDEL 294 Query: 208 LRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVL---------LCPLYGALSLNDQRKAI 258 + + G +L+FL G +I + L + +G+ + PL+ LS +Q + Sbjct: 295 MLEGPGDILVFLSGERDIHDAHDALTAHLGARATDPRDPGYTEIVPLFARLSAAEQHRIF 354 Query: 259 LPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMT 318 R++VLATNIAETSLT+ GIR V+D R++R+ T + RL + +SQAS Sbjct: 355 --QSHSHRRIVLATNIAETSLTVPGIRYVIDPGTARISRYSKTTKVQRLPIEPISQASAN 412 Query: 319 QRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGC----SDPAQ 374 QR+GR GR+ GI++ L ++E + +EPEIL++ L+ +++ ++ G D A Sbjct: 413 QRSGRCGRVAEGIAIRLYSQEDFQARPEFTEPEILRTSLASVILHMVSVGVVRTPDDIAS 472 Query: 375 MSWLDQPPVVNLLAAKRLLQMLGALE----GERLSAQGQKMAALGNDPRLAAMLVSAKND 430 ++D P + LLQ L AL G L+ G+++AAL DPRLA M+V A Sbjct: 473 FPFVDPPDTKAVRDGVALLQELSALSSGKRGTTLTPVGRQLAALPIDPRLARMIVEANRR 532 Query: 431 DEAATAAKIAAIL 443 A IAA L Sbjct: 533 GVAGEVLIIAAAL 545 >UniRef50_D2S4R8 ATP-dependent helicase HrpA n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S4R8_9ACTO Length = 1333 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 173/458 (37%), Positives = 249/458 (54%), Gaps = 36/458 (7%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LPV+A ++ AL V+++ TG+GK+T LP + L G+ G+I +PRR+A Sbjct: 71 AELPVSARRDDIAAALREHQVVVVAGETGSGKTTQLPKIALELGRGVTGRIGHTQPRRIA 130 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA+R+AE L G+ VG+++R + VG +T ++V+T+GVL I RD L + Sbjct: 131 ARTVAERIAEELETPLGEVVGWKVRFTDQVGDSTLVKVMTDGVLLAEIGRDRLLRQYDTL 190 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----------- 169 I+DE HERSL D L L + R DLKL+I SAT+D DR+ + Sbjct: 191 IIDEAHERSLNVDFLLGYLARLLP-RRPDLKLVITSATIDVDRIAKHFTGLGEKGQSAGL 249 Query: 170 -----------EAPVVISEGRSFPVERRYLPLPAHQRFD--------DAVAVATAEMLRQ 210 E PVV GR++PVE RY P+ D A+A A E+ + Sbjct: 250 GDDGHGSADGAEVPVVEVSGRTYPVEVRYRPVVDPDDPDADPDRDQVTAIADAVEELAAE 309 Query: 211 ESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVL 270 G +L+FL G EI+ + L R S V + PLY LS DQ + AP R+VVL Sbjct: 310 GPGDVLVFLAGEREIRDTADVLTERFPS-VEVLPLYSRLSAADQHRVF--APHTGRRVVL 366 Query: 271 ATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPG 330 ATN+AETSLT+ GIR VVD R++R+ R + RL + +SQAS QR+GR GR G Sbjct: 367 ATNVAETSLTVPGIRYVVDPGTARISRYSSRLKVQRLPIEPISQASARQRSGRCGRTSEG 426 Query: 331 ISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAK 390 I++ L +E E ++PEIL++ L+ +L+++ D A ++D P + Sbjct: 427 IAIRLYTEEDYEGRPEYTDPEILRTSLASVLLQMAALELGDVADFPFIDPPDRRAVADGV 486 Query: 391 RLLQMLGAL-EGERLSAQGQKMAALGNDPRLAAMLVSA 427 LL+ LGAL E L+ G+ +A L DPR+A M+V A Sbjct: 487 ALLEELGALGEDGGLTPTGRALATLPLDPRMARMVVEA 524 >UniRef50_D0MZQ2 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZQ2_PHYIN Length = 910 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 161/452 (35%), Positives = 250/452 (55%), Gaps = 13/452 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ A +++ A++ V+L TG+GK+T +P + + ++ + +PRR+AA Sbjct: 271 LPIYAHRSKIIEAVNDNQVVILVGETGSGKTTQIPQYIWESDRAHARVAITQPRRVAAIT 330 Query: 64 VAQRLAELLNEKP-GDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VAQR+ E N P GD+VGY +R + NTRL+ +T+G+L R P L +V+L Sbjct: 331 VAQRVCEEANRGPLGDSVGYCVRFDDTTSKNTRLKFMTDGMLVREALLSPTLERYSVVVL 390 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-APVVIS-EGRS 180 DE HER+LQ D+ ++ + R DLK+++MSATLD ++ + P VI GR Sbjct: 391 DEAHERTLQTDILFGIVKRAMRK-RKDLKVVVMSATLDVALFKRFFQDFKPAVIQIPGRM 449 Query: 181 FPVERRYLPLPAHQRFDDA-VAVATAEMLRQES-GSLLLFLPGVGEIQRVQ---EQLASR 235 F V+ Y D A VAV + + S GS+L+FL G +I+ ++ E+ A Sbjct: 450 FQVDVFYTAKTQPDYLDSALVAVLQIHLEEKTSNGSILVFLTGQEDIETLETLLEEYARS 509 Query: 236 IGSDVL---LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + +D L +CP++ A+ Q K PAP G+RKV+LATNIAETS+TI G+R VVD Sbjct: 510 LPADALKLMVCPIFAAMPREQQMKVFEPAPAGVRKVILATNIAETSITINGVRYVVDTGL 569 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 + F +G+ L T+ VS+A QR GRAGR PGI L +E E+ ++ P+I Sbjct: 570 VKQRSFVASSGMEMLQTESVSKAQAWQRTGRAGREAPGICYRLFPEETFEQLPERAIPDI 629 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 + L ++++L G D ++++P +L+ A L LGAL+ + +L+ G++M Sbjct: 630 QRVSLEVVVLQLKIMGIDDALAFDFIEKPLKTSLVKALEKLYALGALDNKGKLTTLGRQM 689 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 A L +P A ML+ A A A + A+L Sbjct: 690 AGLPVEPMYAVMLLKATELGCAEEALSVVAML 721 >UniRef50_A8ZWI2 ATP-dependent helicase HrpA n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZWI2_DESOH Length = 1307 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 255/462 (55%), Gaps = 21/462 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLAA 61 +LP+A E++ A+ P V++S TG+GK+T +P +A G +G+I +PRR+AA Sbjct: 76 ALPIAPRQDEIIAAIQKHPVVIVSGATGSGKTTQIPRYCVAAGCGRDGRIGCTQPRRIAA 135 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA R+A+ L VG+++R + ++++T+G+L QRD L+ ++ Sbjct: 136 VSVAARIADELGTASTGLVGHKIRFSDTTAGTHLIKIMTDGILLAEAQRDRYLNEYDAIV 195 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L +L V RDDL+++I SAT+D ++ +APV+ GR + Sbjct: 196 VDEAHERSLNIDFILGILKQVL-AKRDDLRVVITSATIDTEKFSAAFDQAPVIEVSGRMY 254 Query: 182 PVERRYLPLPAHQRFDDA-------VAVATAEML--RQESGSLLLFLPGVGEIQRVQEQL 232 PVE +Y P F + +AVA E + R G +L+F+P +I+ + + Sbjct: 255 PVEIKYTP--PEPEFGNGEPPTYVELAVAEVERVCRRSPFGDILVFMPTAQDIRETCDMI 312 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 R + PL+ LS DQ + + P G RK+++ATNIAETS+TI GIR VVD Sbjct: 313 EGRRMPGATVMPLFARLSGADQAR-VFSRPPG-RKIIVATNIAETSITIPGIRYVVDTGL 370 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R++ ++PRT T L + +SQ+S QRAGR GR+E G+ + L ++ E + PE+ Sbjct: 371 ARISYYNPRTRTTSLSVRSISQSSCQQRAGRCGRVENGVCVRLYDQKDFESRHLFTPPEV 430 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-----GERLSAQ 407 L+++L+ +++ ++ P ++D+P ++ L LGA++ G RL+ Sbjct: 431 LRANLAEVVLRMMALKLGTPDTFPFVDRPADRSIRDGYDTLVELGAIQAVSRGGYRLTET 490 Query: 408 GQKMAALGNDPRLAAMLVSA-KNDDEAATAAKIAAILEEPPR 448 G+ MA + DPRLA +L+ A KN ++A+ + PR Sbjct: 491 GRLMAKIPADPRLARILIEAGKNGCLEPAVVVVSALSMQDPR 532 >UniRef50_Q65SL6 HrpA protein n=9 Tax=Pasteurellaceae RepID=Q65SL6_MANSM Length = 1337 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 251/471 (53%), Gaps = 51/471 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV+ E+ + V+++ TG+GK+T LP L G G I +PRR+AA Sbjct: 83 NLPVSQRKTEIQKLIAQNQVVIVAGETGSGKTTQLPKMCLELGFGQKGLIGHTQPRRIAA 142 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE + + G VGY++R + +G +T+++++T+G+L IQ D L+ +I Sbjct: 143 RSVAARIAEEMQTELGGIVGYKVRFNDQIGEDTQIKLMTDGILLAEIQTDRFLNRYDCLI 202 Query: 122 LDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +DE HERSL D L L +Q L R DLK++I SAT+D +R + AP++ GR Sbjct: 203 IDEAHERSLNNDFILGYL---KQLLPRRPDLKVIITSATIDVERFSKHFNNAPIIEVSGR 259 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATA--EMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 ++PVE RY P+ + D + A E+ + G +L+FL G EI+ E L + Sbjct: 260 TYPVEVRYRPVAETEEQDQLQGILNAVDELQAEGRGDILIFLSGEREIRDTAEALEKQNL 319 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + PLY LS +Q K P G+ ++VLATN+AETSLT+ GI+ V+D R++R Sbjct: 320 RHTEILPLYARLSAQEQNKIFHPG--GLNRIVLATNVAETSLTVPGIKYVIDPGTARISR 377 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + RT + RL + +SQAS QR GR GR+ G+ + L +++ ++PEIL+++L Sbjct: 378 YSYRTKVQRLPIEPISQASANQRKGRCGRVSEGVCIRLYSEQDFNNRPEFTDPEILRTNL 437 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE----------------- 400 + +++++ G D ++D P ++ +LL+ LGA E Sbjct: 438 ASVILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLLEELGAFEWQKSPPSAFGTSPRKRG 497 Query: 401 -----------------------GER-LSAQGQKMAALGNDPRLAAMLVSA 427 G+R L+ G+++A L DPRLA ML+SA Sbjct: 498 EGNLASNSSLPPFTGGAGHSPEGGKRVLTQTGRQLAQLPVDPRLAKMLLSA 548 >UniRef50_UPI000050FFFD ATP-dependent helicase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FFFD Length = 1354 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 166/513 (32%), Positives = 269/513 (52%), Gaps = 42/513 (8%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 +LPV+A E+ A+ V+++ TG+GK+T LP + L G+NG I +PRR+AA Sbjct: 8 NLPVSAAKDEIAEAIRDNQVVIVAGETGSGKTTQLPKICLELGLGVNGLIGHTQPRRIAA 67 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA+R+A+ L E G T+GY++R V +TR++V+T+G+L + RD L ++I Sbjct: 68 RTVAERIADELGEDLGGTIGYQVRFTAQVADSTRVKVMTDGILLSELSRDKLLRDYEVII 127 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L +V G R +LK++I SAT+D +AP++ GR++ Sbjct: 128 IDEAHERSLNIDFLLGYLKEVM-GKRPELKVIITSATIDPQSFAAHFDDAPIIEVAGRTY 186 Query: 182 PVERRYLPL---------------------PAHQRFDDAVAVATAEMLRQESGSLLLFLP 220 PVE RY PL P Q + + A E+ + G +L+FL Sbjct: 187 PVEVRYRPLVDDDEDDDVDGPGESGSYETGPEEQ--TEGIIAAFDELSTEAPGDILVFLS 244 Query: 221 GVGEIQRVQEQLASRIG-----SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIA 275 G EI+ E L + + S+ + PL+ LS +Q+K P ++VLATN+A Sbjct: 245 GEREIRDTAEALEAHLRKRPRLSNWEVVPLFARLSAGEQQKVF--KPHSRPRLVLATNVA 302 Query: 276 ETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHL 335 ETSLT+ GI+ V+D R++R+ RT + RL +R+SQAS QR GR+GR GI + L Sbjct: 303 ETSLTVPGIKYVIDVGTARISRYSNRTRVQRLPIERISQASANQRKGRSGRTSDGICIRL 362 Query: 336 IAKEQAERAAAQSEPEILQSDLSGLLMEL--LQWGCSDPA--QMSWLDQPPVVNLLAAKR 391 ++ + ++PEIL+++L+ +++++ L + SD +L P + + Sbjct: 363 YSETDFDSRPEFTDPEILRTNLASVILQMTDLGFAASDKEILDFPFLTPPEAKAVRDGRT 422 Query: 392 LLQMLGALEGER-----LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-E 445 +L LGAL ++ ++ G++++ L DPRLA M+++ I A L + Sbjct: 423 MLAELGALTSDKAGTITVTPTGRQLSLLPIDPRLARMVIAGAEAGCGGEVTIIVAALSIQ 482 Query: 446 PPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 PR +++ A + L LN+ Sbjct: 483 DPRERPTEVRAAADEKHARFTHPGSDFLSYLNL 515 >UniRef50_UPI0001AF14C1 ATP-binding RNA helicase n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF14C1 Length = 814 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 169/425 (39%), Positives = 240/425 (56%), Gaps = 19/425 (4%) Query: 68 LAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHE 127 +A LL E+ G +VG+ +R + VG +TR+EVVT GVL + +QRD EL+GV +V+LDE HE Sbjct: 1 MAWLLGEEVGGSVGFTVRGERAVGRHTRVEVVTTGVLLQRLQRDQELAGVDVVVLDECHE 60 Query: 128 RSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRY 187 R L AD A A L DV++ LR +L+L+ SAT D + ++L APVV + G +FPVE + Sbjct: 61 RHLDADTAAAFLWDVREALRPELRLVAASATTDAEGWARLLGGAPVVEAPGAAFPVEVVW 120 Query: 188 LPLPAHQR------FDDAVAVATAEMLR----QESGSLLLFLPGVGEIQRVQEQLASRIG 237 P R D A+ A ++R + G +L+FLPGVGEI RV QL Sbjct: 121 APPARPVRPPHGLWVDPALTAHVASVVRRALAERDGDVLVFLPGVGEIARVAGQLTGLGE 180 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 DVL ++ D A+L AP R+VVLAT++AE+SLT+ G+R+VVD R R Sbjct: 181 VDVLQVHGRAPAAVQD---AVL-APGARRRVVLATSVAESSLTVPGVRVVVDAGLAREPR 236 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 D GL+ L T R S+A+ QRAGRAGR PG A+ + R PEI +DL Sbjct: 237 VDHARGLSALTTVRASRAAGRQRAGRAGREAPGAVYRCWAEAEDARLPRFPSPEIKVADL 296 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGN 416 + ++ WG D + ++ LD PP + AA+ +L +GA+ + R + +G ++A LG Sbjct: 297 TAFALQAACWGDPDASGLALLDPPPGGAMAAARDVLAAIGAVGPDGRATPRGARLARLGL 356 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAIL-EEPPRMGNSDLGVAF---SRNQPAWQQRSQQL 472 PRL L+ A A AA++ A++ EEPPR DL A R A+ R + Sbjct: 357 HPRLGRALLDAAPVVGAGLAAEVVALIGEEPPREYGDDLAGALRAARRGGDAYAGRWRTE 416 Query: 473 LKRLN 477 ++RL Sbjct: 417 VRRLR 421 >UniRef50_P20095 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 n=11 Tax=Saccharomycetaceae RepID=PRP2_YEAST Length = 876 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 162/459 (35%), Positives = 247/459 (53%), Gaps = 28/459 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GK--IILLEPRRL 59 LPV ELL + +++ TG+GK+T LP Q L G GK I + +PRR+ Sbjct: 223 LPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLP-QYLVEDGFTDQGKLQIAITQPRRV 281 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVG 118 AA +VA R+A+ +N G VGY++R ++ PN T L+ +T+G+L R D +LS Sbjct: 282 AATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDSKLSKYS 341 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 +++DE HER+L D+ + LL D+ R LKLLI SAT++ + + P+ G Sbjct: 342 CIMIDEAHERTLATDILIGLLKDILPQ-RPTLKLLISSATMNAKKFSEFFDNCPIFNVPG 400 Query: 179 RSFPVERRYLPLPAHQRFDDAVA----VATAEMLRQESGSLLLFLPGVGEIQRVQ---EQ 231 R +PV+ Y P A+ + T + L G +L+FL G EI+R + E+ Sbjct: 401 RRYPVDIHYTLQPEANYIHAAITTIFQIHTTQSL---PGDILVFLTGQEEIERTKTKLEE 457 Query: 232 LASRIGS---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 + S++GS +++ P+Y L Q K P P+ RKVVLATNIAETSLTI+GIR V+ Sbjct: 458 IMSKLGSRTKQMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVI 517 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQ 347 D + + P TG+T+L+T S+AS+ QRAGRAGR+ PG + K Sbjct: 518 DPGFVKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRVGPGKCFRIFTKWSYLHELELM 577 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSA 406 +PEI +++LS ++ LL G +D + +D+P + L + L +LGAL + ++ Sbjct: 578 PKPEITRTNLSNTVLLLLSLGVTDLIKFPLMDKPSIPTLRKSLENLYILGALNSKGTITR 637 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE 445 G+ M +P A +L + AAT + +LEE Sbjct: 638 LGKMMCEFPCEPEFAKVLYT------AATHEQCQGVLEE 670 >UniRef50_D0LBQ9 ATP-dependent helicase HrpA n=2 Tax=Corynebacterineae RepID=D0LBQ9_GORB4 Length = 1324 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 161/456 (35%), Positives = 248/456 (54%), Gaps = 35/456 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LPV+A E+ A+ V+++ TG+GK+T LP L G+ G I +PRR+AA Sbjct: 88 LPVSAARTEIAEAIRDHQVVVIAGETGSGKTTQLPKICLGLGRGVRGMIGHTQPRRIAAS 147 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R+A+ GD VGY +R + ++ + V+T+G+L R I DP L +I+ Sbjct: 148 SVARRIADETETTLGDVVGYSVRFTDRSSADSLIRVMTDGILLREIGTDPLLRRYDTLII 207 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----EAPVVISEG 178 DE HERSL D L L + R DLK++I SAT++ +R + E P++ G Sbjct: 208 DEAHERSLNIDFILGYLRRLLP-RRPDLKVIITSATIEPERFARHFSTPAGEVPILEVSG 266 Query: 179 RSFPVERRYLPL-----PAHQRFDD-------------AVAVATAEMLRQESGSLLLFLP 220 R++PV+ RY L P H DD + A E+ G +L+FLP Sbjct: 267 RTYPVDVRYRALTLRESPDHG--DDLGGGEHADLDLFQGIDAAIDELWSTGRGDVLVFLP 324 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 +I+ + L R + + PLY LS+ DQ++ AP R++VLATN+AETS+T Sbjct: 325 TERDIRDAADTLRRRASAGAEIVPLYARLSVADQQRVF--APSDGRRIVLATNVAETSVT 382 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + GIR VVD R++R+ RT + RL + +SQAS QRAGR GR+ PGI + L ++E Sbjct: 383 VPGIRYVVDSGTARISRYSTRTKVNRLPIEPISQASARQRAGRCGRVAPGICIRLYSEED 442 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + A ++PEIL+++L+ +++++ D A ++ P + +L LGA+E Sbjct: 443 FDARPAFTDPEILRTNLAAVILQMTSLRLGDIADFPFVAPPDPRAIRDGIAVLTELGAIE 502 Query: 401 ---GE----RLSAQGQKMAALGNDPRLAAMLVSAKN 429 G+ RL+A G+ MA L DPR+A ML++ Sbjct: 503 MPDGQSGLPRLTAVGRSMARLPVDPRIARMLIAGHE 538 >UniRef50_A2F2U1 Putative uncharacterized protein n=2 Tax=Trichomonas vaginalis RepID=A2F2U1_TRIVA Length = 706 Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 163/466 (34%), Positives = 241/466 (51%), Gaps = 25/466 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL--AHPGINGKIILLEPRRLAA 61 LPV E++ A+ P V++ TG+GK+T +P +L A KI+ +PRR+AA Sbjct: 37 LPVYEHRMEIIAAIRDNPIVIIEGQTGSGKTTQIPQFVLEEALSPYGKKIVCTQPRRVAA 96 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+A+ ++ K GD VGY +R + V NT+L +T+G+L R DP++S G+VI Sbjct: 97 ISIATRVAQEMDVKLGDVVGYSVRYDDYVSENTKLVYMTDGLLMREFISDPKISKYGVVI 156 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA----PVVISE 177 +DE HER++ D+ + +L + +R DLK++IMSATLD + Q P + Sbjct: 157 IDEAHERTVNTDIIIGILK-LIGNVRPDLKIIIMSATLDAGKFVQFYTHGDITPPHLKIP 215 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI- 236 GR F VE + P AV + ++ SG +L+F+ G EI+R L RI Sbjct: 216 GRQFNVEVFHQPQMVQNEITAAVNKCMEILEKESSGDILIFMTGEDEIERACSILRDRIS 275 Query: 237 -----GS--DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 GS D L+ PLY AL +Q K G RKVV++TNIAETS+TI+G+ V+D Sbjct: 276 RTRVTGSVVDALVFPLYAALPPGEQAKVFNKLSAGTRKVVVSTNIAETSVTIDGVVYVID 335 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 C + + + P + L +S+A+ QR GRAGR G + +EQ E QS Sbjct: 336 CGYVKQSGYSPSSRKRSLNRVYISKAAANQRKGRAGRTCDGFCYRMYTQEQYEMMEEQSV 395 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL---------- 399 PEI +SDL +++ +L SD +LD P L+ A L L Sbjct: 396 PEIQRSDLCSVILLMLAAHISDIVHFPFLDHPHYKLLVGALEELYHLDTFLPHSPLPQNS 455 Query: 400 EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE 445 E LS +G+ MA L +P+ A L+S+ + I AIL E Sbjct: 456 LPEVLSTEGKLMAGLPIEPKYAKALLSSYEYGNSRDIIAIVAILSE 501 >UniRef50_B2SSX2 ATP-dependent helicase HrpA n=13 Tax=Xanthomonadaceae RepID=B2SSX2_XANOP Length = 1373 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 176/461 (38%), Positives = 249/461 (54%), Gaps = 22/461 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LP+A ++ + V+++ TG+GK+T LP L L A G G I +PRR+A Sbjct: 75 NQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRGAAGMIGCTQPRRIA 134 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+AE L G VG+++R + V +R++ +T+G+L I D LS + Sbjct: 135 ARAVAARVAEELKTPLGTIVGFQVRFTDRVSEQSRIKFMTDGILLAEIASDRWLSAYDTI 194 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLKL++ SAT+D +R Q APV+ EGR+ Sbjct: 195 IVDEAHERSLNIDFLLGYLKQLLHK-RSDLKLIVTSATIDTERFAQHFDNAPVINVEGRT 253 Query: 181 FPVERRYLPLPA----------------HQRFDDAVAVATAEMLRQE-SGSLLLFLPGVG 223 FPVE RY PL + +DA+ A E+ R + G +L+FLPG Sbjct: 254 FPVEVRYRPLEGDTGDSDDGEHSSGRDGERSVNDAIVAAIDEITRIDPRGDVLMFLPGER 313 Query: 224 EIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEG 283 EI+ + L R + + PLY LS DQ + P P+ R++VLATN+AETSLT+ Sbjct: 314 EIRDAHQALERRKYRETEVVPLYARLSAADQDRVFNPGPR--RRLVLATNVAETSLTVPR 371 Query: 284 IRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER 343 IR VVD RV R+ PR L RL + +SQAS QR GR GR+ GI L A+ Sbjct: 372 IRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGICYRLYAEADFAA 431 Query: 344 AAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE- 402 A ++PEI +S LSG+++ +LQ G +L+ P + + L LGA++ + Sbjct: 432 RPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQLLELGAIDAQR 491 Query: 403 RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 RL+A G +MA L D +LA MLV+A+ IAA L Sbjct: 492 RLTATGCQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFL 532 >UniRef50_Q3LVV7 Putative pre-mRNA splicing factor n=1 Tax=Bigelowiella natans RepID=Q3LVV7_BIGNA Length = 779 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 154/460 (33%), Positives = 247/460 (53%), Gaps = 12/460 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLAAR 62 LP+ L+ A+D +++ A TGAGK+T +P L + G G+I + +PRR+AA Sbjct: 150 LPIINSFFPLMKAVDLYDTLIVVAETGAGKTTQIPKYLFSMGYGRLGQIGITQPRRIAAI 209 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 NVA R+A +N G VGY +R ++C+ T+++ +TEG+L R I +P L +++L Sbjct: 210 NVATRVALEVNSSVGLLVGYVIRFEDCISNLTKIKFMTEGILLREIINEPLLLQYSVLVL 269 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERS+ +D+ +LL D+ LR DLKL+I SAT++ ++ + AP+ G+ + Sbjct: 270 DEAHERSIFSDILFSLLKDLNI-LRSDLKLIICSATINTNKFSKFFSYAPLFQIPGKIYS 328 Query: 183 VERRYLPLPAHQRFDDAVAVATAEM-LRQESGSLLLFLPGVGEIQRVQEQLASR------ 235 VE Y + + DAV ++ ++ + G +L+FL G +I+ V+ ++ R Sbjct: 329 VE-IYNSKESEIDYLDAVVRTILQIHIKSKQGDILVFLTGQEDIEIVENIISKRSKLIKT 387 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + PLY LS N Q K L P RKVVL+TNIAETSLTI GI V+D ++ Sbjct: 388 LMGQLETFPLYANLSYNLQNKIFLKLPTNKRKVVLSTNIAETSLTISGITFVIDSGLCKL 447 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS-EPEILQ 354 FD LI ++++S QR+GRAGR GI L + + ++ PEI + Sbjct: 448 KYFDYLAKYETLIVSPIAKSSAWQRSGRAGRTAKGICFRLYTVDTYKFVLRKAIVPEIQR 507 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 ++ +++ L G +D +LD+PPV ++ A+ L +LG L E +LS G+ M Sbjct: 508 IEIDSVILILKCLGINDINNFEFLDKPPVESVFASLEHLYILGGLNEEGQLSKLGRYMCE 567 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD 453 P L+ +L+ + I +IL R+ N + Sbjct: 568 FPLKPSLSKILIISNFHQCVEEILIICSILSLESRIFNYN 607 >UniRef50_Q1NTJ0 ATP-dependent helicase HrpA n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NTJ0_9DELT Length = 1307 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 163/476 (34%), Positives = 257/476 (53%), Gaps = 27/476 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 + LP+AA E++ + +P V+++ G+GK+T +P LLA G KI +PRRLA Sbjct: 18 AELPIAAWQEEIVGQISASPVVIIAGEPGSGKTTQIPKFCLLAGRGRRQKIGCTQPRRLA 77 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +A+RL L VG+R+R + TR++ +T+G+L +QRD EL + Sbjct: 78 AVAMAERLGVELGSSGSSLVGHRVRFSDRTDRATRVKFMTDGILLAEVQRDGELRDYDTI 137 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D L +L D+ RDDLK++I SAT+D + + +APV+ GR+ Sbjct: 138 IVDEAHERTLNIDFLLGILKDLL-ARRDDLKVIITSATIDTAKFSRHFSDAPVIEVSGRA 196 Query: 181 FPVERRYLPLPAHQRFD----DAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQLAS- 234 PVE RY P D + A A E+L + G +L+F+P +I+ E + S Sbjct: 197 HPVEIRYQPWDEENGEDPGHVERAAAAVEEILTTSTAGDILVFMPTERDIRETAELINSQ 256 Query: 235 ----RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 R G ++ PLYG LS +Q + P RKVV+ATN+AETS+T+ GIR VVD Sbjct: 257 PAGRRRGGKAVVLPLYGRLSPAEQARIFRPV--AGRKVVVATNVAETSITVPGIRYVVDS 314 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 R+A ++PR +L V+++S QRAGR GR+ PGI + L +E + P Sbjct: 315 GLARIAAYNPRARTHKLPVVPVARSSCDQRAGRCGRVGPGICIRLYREEDYLNRPLYTPP 374 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-------- 402 EI++S+L+ +++ ++ P ++D P + +LL LGA+ E Sbjct: 375 EIVRSNLAEVILRMVALKLGRPDAFPFVDPPSSRAISDGYQLLTELGAVAPEPRRGRQKG 434 Query: 403 ----RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSD 453 +L+ +G+ MA L DP ++ M++ A+ ++ + IAA L + PR+ +D Sbjct: 435 RPPLQLTPRGRLMARLPLDPCISRMIIEARENNALSEVCVIAAALSIQDPRLRPAD 490 >UniRef50_A6C1G8 ATP-dependent helicase HrpA n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C1G8_9PLAN Length = 1334 Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 162/483 (33%), Positives = 258/483 (53%), Gaps = 46/483 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 SLP+ L + ++ V++ TG+GKST LP LL+ GI+G I +PRR+AA Sbjct: 92 SLPIHQELATIQKTIEENQVVIVCGETGSGKSTQLPKLLLSMGRGISGIIGHTQPRRIAA 151 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R++E L + G G+++R + PNT ++++T+G+L Q D L+ +I Sbjct: 152 RSVAARISEELGREQGTACGFKIRFTDTTNPNTYIKLMTDGILLAETQTDSFLNQYDTII 211 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----EAPVVISE 177 +DE HERSL D L L + R DL+++I SAT+D +R + AP++ Sbjct: 212 IDEAHERSLNIDFLLGFLKRLLPK-RRDLRVIITSATIDAERFSEHFAGSEGPAPILNVS 270 Query: 178 GRSFPVERRYLPLPAHQRFDDA------------------------VAVATAEMLRQESG 213 GR++PVE RY P FDD +A A E+ + G Sbjct: 271 GRTYPVEIRYRP------FDDEPAGKEAGKETGNKSQNSSRDEQSQLADAVNELAAIDDG 324 Query: 214 SLLLFLPGVGEIQRVQEQLASR--IGSD----VLLCPLYGALSLNDQRKAILPAPQGMRK 267 +L+F+ +I+ + L R IG D + PLYG LS +Q K P+ R+ Sbjct: 325 DILIFVATEWDIRETAKLLRGRSIIGDDGGRQTEIVPLYGRLSTAEQNKVFRPS--SYRR 382 Query: 268 VVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRL 327 +V+ATN+AE+S+T+ GIR V+D R++R+ R+ + RL + VSQAS QRAGR GR+ Sbjct: 383 IVIATNVAESSITVPGIRYVIDTGLARISRYSSRSQVQRLPIEAVSQASANQRAGRCGRV 442 Query: 328 EPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLL 387 PGI + L ++ + + PEIL+++L+ ++++ L + ++D P + Sbjct: 443 APGICIRLYSEADYKSRDEFTSPEILRTNLASVILQTLNMRLGAIEEFPFIDPPKPTAIR 502 Query: 388 AAKRLLQMLGAL-EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-E 445 L LGA+ E RL+ G+K++ L DPR+A M+++A +++ IAA LE + Sbjct: 503 DGYSTLFELGAIDEQNRLTDIGRKISRLPVDPRIARMILAAHDENCLHEILIIAAALELQ 562 Query: 446 PPR 448 PR Sbjct: 563 DPR 565 >UniRef50_B6BTD8 ATP-dependent helicase HrpA n=2 Tax=Betaproteobacteria RepID=B6BTD8_9PROT Length = 1223 Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 141/437 (32%), Positives = 242/437 (55%), Gaps = 15/437 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLA 60 S LP+ + ++ + ++ TG+GK+T LP + + G N I +PRR+A Sbjct: 7 SPLPILENIDQVAKIIKNNQVTIICGETGSGKTTQLPKICIKIGRGKNKIIGHTQPRRIA 66 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+A+ L G+ VGY++R + +T+++++T+GVL Q DP L + Sbjct: 67 ARSVATRIAQELETSIGNEVGYKVRFTDKTSSHTKIKLMTDGVLLAETQSDPLLKRYDTL 126 Query: 121 ILDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 I+DE HER+L D + ++Q L R DLK++I SAT+D D+ + AP + G Sbjct: 127 IIDEAHERNLNIDFLIGF---IKQLLPKRPDLKIIITSATIDADKFSKHFDGAPTLEISG 183 Query: 179 RSFPVERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 R+FPVE Y P+ + D ++V E+ R+ SG +L+FLPG +I ++ L Sbjct: 184 RTFPVETLYRPMKNIEEEDVLSIEESVYEVIQEIGRK-SGDILVFLPGEKDIHDIRRYLN 242 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + D + PL+ L + DQ+K + + ++++LATNIAETSLT+ I+ V+D Sbjct: 243 EMLNHDYEVLPLFSRLPVPDQQKIFTTSTK--KRIILATNIAETSLTVPNIKFVIDSGLA 300 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 RV R++PR + +L+ +++SQA+ QR GR GR+ PG+ L ++ + + ++PEI+ Sbjct: 301 RVVRYNPRLRIEQLLIEKISQAAANQRTGRCGRIAPGVCYRLYDEDDFKNRSEYTDPEIM 360 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMA 412 +S L+ +++ + D ++D P + LL L A+E R ++ G+ MA Sbjct: 361 RSSLASVILRMASLNLGDVEVFPFIDAPFKKFIQDGYDLLFELHAVEKNRAITELGRTMA 420 Query: 413 ALGNDPRLAAMLVSAKN 429 + DP + +++ A N Sbjct: 421 QIPIDPVFSRIIIEASN 437 >UniRef50_Q47AH6 ATP-dependent helicase HrpA n=7 Tax=Betaproteobacteria RepID=Q47AH6_DECAR Length = 1329 Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 161/429 (37%), Positives = 237/429 (55%), Gaps = 26/429 (6%) Query: 23 VLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVG 81 V++ TG+GK+T LP + L G G I +PRRLAAR+VA RLA+ L + G VG Sbjct: 104 VIVCGETGSGKTTQLPKICLDLGIGARGLIGHTQPRRLAARSVATRLAQELKTQVGAGVG 163 Query: 82 YRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLD 141 ++R + + ++++T+G+L Q DP L+ +I+DE HERSL D L L Sbjct: 164 VKIRFHDKSTSESWVKLMTDGILLAESQSDPYLNAYEAIIIDEAHERSLNIDFLLGYLKQ 223 Query: 142 VQQGLRDDLKLLIMSATLDNDRLQQMLP----EAPVVISEGRSFPVERRYLPLPAHQRFD 197 + R DLKL+I SAT+D +R Q APV+ GR FPVE RY P+ + D Sbjct: 224 LLPK-RPDLKLIITSATIDAERFSQHFSAHGKSAPVIEVSGRLFPVEVRYRPVVDIDKKD 282 Query: 198 D------AVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL----------ASRIGSDVL 241 D A+ A E+ R SG +L+FLPG EI+ E L +S ++L Sbjct: 283 DERDLYDAIVDAADELSRLGSGDILVFLPGEREIREAAEALRKHALARPGLSSAHAPEIL 342 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 PL+ LS DQ + P+ G R++VLATN+AETSLT+ GIR V+D RV R+ R Sbjct: 343 --PLFSRLSAGDQDRIFKPS-GGQRRIVLATNVAETSLTVPGIRYVIDTGLARVKRYSYR 399 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 + +L + +SQA+ QRAGR GR+ G+ + L + A ++PEIL+S L+G++ Sbjct: 400 NKVEQLQVEPISQAAARQRAGRCGRVAAGVCVRLYDEADFNARAPFTDPEILRSSLAGVI 459 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRL 420 + + +D +++ PP + LLQ LG L+ + RL+ G +A L DPR+ Sbjct: 460 LRMKSLKLTDVESFPFIEPPPAKAISDGYALLQELGGLDDDNRLTKVGDALAKLPLDPRI 519 Query: 421 AAMLVSAKN 429 MLV+A++ Sbjct: 520 GRMLVAARD 528 >UniRef50_A9C368 ATP-dependent helicase HrpA n=13 Tax=cellular organisms RepID=A9C368_DELAS Length = 1391 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 164/468 (35%), Positives = 260/468 (55%), Gaps = 31/468 (6%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPL--------QLLAHPGINGK---- 50 SLPV+A E++ A+D +++ TG+GK+T LP ++ A P G+ Sbjct: 42 SLPVSARREEIMEAMDRHQVIIVCGETGSGKTTQLPKIALALGRGKVNATPDDKGQVRGH 101 Query: 51 -IILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQ 109 I +PRR+AA +VA+R+AE LN GD VGY++R Q+ + + ++++T+G+L Q Sbjct: 102 LIGHTQPRRIAASSVAKRIAEELNTPLGDVVGYKVRFQDRLSKDASVKLMTDGILLAETQ 161 Query: 110 RDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML- 168 DP L +I+DE HERSL D L + + R DLK+++ SAT+D +R + Sbjct: 162 TDPLLKAYDTLIIDEAHERSLNIDFLLGYIKQILP-RRPDLKVVVTSATIDAERFSRHFE 220 Query: 169 -PE--APVVISEGRSFPVERRYLPLPAHQRFD--DAVAVATAEMLRQE-SGSLLLFLPGV 222 P+ APV++ GR++PVE R+ P + D DA+A E+ SG +L+FLPG Sbjct: 221 GPKGPAPVIMVSGRTYPVEMRWRPFEEKRDHDLNDAIAEGVDELWAGGVSGDILVFLPGE 280 Query: 223 GEIQRVQEQLASRIGSDVLL-----CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAET 277 EI+ + L + +L PL+ LS +Q + I + G R++VLATN+AET Sbjct: 281 REIREAADHLRKHLAQQPVLRHAEVLPLFSRLSQAEQDR-IFDSHTG-RRIVLATNVAET 338 Query: 278 SLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA 337 SLT+ GIR V+D RV R+ R+ + +L+ + +SQA+ QRAGR GR+ GI + L Sbjct: 339 SLTVPGIRYVIDAGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGICIRLYD 398 Query: 338 KEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLG 397 + A ++PEIL+S L+G+++ + G D +L+ P + +LL LG Sbjct: 399 EADFGTRARFTDPEILRSSLAGVILRMKSLGLGDVVNFPFLEAPSGRAIADGYQLLGELG 458 Query: 398 ALE--GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 A++ GE L G++++ L DPR+ M++ A+ A IA+ L Sbjct: 459 AVDERGE-LLPMGRELSRLPLDPRVGRMILEARTRGAVAEVLVIASAL 505 >UniRef50_Q54NJ4 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 n=19 Tax=Eukaryota RepID=DHX15_DICDI Length = 727 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/452 (34%), Positives = 247/452 (54%), Gaps = 13/452 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKII-LLEPRRLA 60 LPV + + + V+L TG+GK+T +P Q + G+ GK++ + +PRR+A Sbjct: 77 LPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIP-QFVVDAGLIRPGKMVGVTQPRRVA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E ++ + G+ VGY +R + T ++ +T+G+L R DP L+ ++ Sbjct: 136 AISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGMLLRESMSDPTLNKYDVI 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HER+L D+ L+ D+ + R DLKL++MSATL+ + Q+ AP++ GR Sbjct: 196 ILDEAHERTLSTDILFGLIKDILKR-RKDLKLIVMSATLEAGKFQKYFENAPLIKVPGRL 254 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQ----RVQEQLASRI 236 PVE Y A + AV + +G +L+FL G EI+ ++Q + R Sbjct: 255 HPVEIFYTEEAAKDYLESAVRTVIDIHTNEGTGDILVFLTGEEEIEDTCAKIQRETRERG 314 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY +L + Q K + RK +++TNIAETSLTI+GI VVD + Sbjct: 315 LPPMKTLPLYSSLPIYQQSKIFDTCKE--RKCIVSTNIAETSLTIDGIVFVVDPGFSKQK 372 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA-KEQAERAAAQSEPEILQS 355 ++PR+ + L+ +S+AS QRAGRAGR PG L K E Q+ PEIL+S Sbjct: 373 TYNPRSRVESLLVAPISKASANQRAGRAGRTRPGKCFRLYTEKAFKELMIQQTHPEILRS 432 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 +L+ ++++LL+ G D ++D P L+ A +L LGAL+ E +L+ G M+ Sbjct: 433 NLASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGALDDEGQLTEIGSIMSEF 492 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEP 446 DP+L+ ML+ + + IAA+L P Sbjct: 493 PLDPQLSKMLIVSAERSCSNEILTIAAMLSAP 524 >UniRef50_A4X5M6 ATP-dependent helicase HrpA n=6 Tax=Actinomycetales RepID=A4X5M6_SALTO Length = 1339 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 169/471 (35%), Positives = 252/471 (53%), Gaps = 36/471 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV+ E+ A+ V+++ TG+GK+T LP + L G++G I +PRRLAAR Sbjct: 81 LPVSDRRDEIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVHGLIGHTQPRRLAAR 140 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA R+AE L + G+ VGY++R + V + ++++T+G+L +Q D L +I+ Sbjct: 141 TVADRIAEELGTELGEVVGYQVRFADQVSDRSLVKLMTDGILLAELQHDRMLRQYDTIIV 200 Query: 123 DEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEA-----PVVI 175 DE HERSL D L L +Q L R DLK++I SAT++ DR + +A PVV Sbjct: 201 DEAHERSLNIDFILGYL---RQLLPRRRDLKVIITSATIETDRFARHFADADGNPAPVVE 257 Query: 176 SEGRSFPVERRYLPL----------PAHQRFDDAVAVATA--EMLRQESGSLLLFLPGVG 223 GR++PVE RY PL Q D A+ A E+ + G +L+FL G Sbjct: 258 VSGRTYPVEVRYRPLVEVGEDEDDTDEEQVRDQVQAIGDAVQELATEGPGDILVFLSGER 317 Query: 224 EIQRVQEQLASRIGS-----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 EI+ + L + + + PLY LS +Q + AP R+VVLATN+AETS Sbjct: 318 EIRDTADALGKLVAHRPTLRNTEILPLYARLSTAEQHRVF--APHTGRRVVLATNVAETS 375 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ GIR VVD R++R+ R + RL + VSQAS QR GR GR GI + L + Sbjct: 376 LTVPGIRYVVDPGTARISRYSNRLKVQRLPIEPVSQASANQRTGRCGRTSDGICIRLYDE 435 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 + ++PEIL+++L+ +++++ G D A ++D P + LL LGA Sbjct: 436 PDFQSRPEFTDPEILRTNLASVILQMTAIGLGDIAAFPFIDPPDRRTITDGVNLLHELGA 495 Query: 399 LE------GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 L +RL+ G+++A L DPRLA M++ + + A IAA L Sbjct: 496 LNPTETDPAKRLTPLGRRLAQLPVDPRLARMVLEGERNGCATEVVVIAAAL 546 >UniRef50_A7H8J8 ATP-dependent helicase HrpB n=5 Tax=Bacteria RepID=A7H8J8_ANADF Length = 921 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 176/393 (44%), Positives = 243/393 (61%), Gaps = 18/393 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLAA 61 LP+ +LP+ L AL AP +++ AP GAGK+T +P +LA G+ G ++++LEPRRLAA Sbjct: 33 LPIDEILPDALAALGAAPSLVIEAPPGAGKTTRVPPAILAG-GLAGAGEVVVLEPRRLAA 91 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R A+R+AE L E+ G+TVGY++R + GP TRL VTEG+LTR + +P L GVG V+ Sbjct: 92 RLAARRVAEELGERVGETVGYQVRFEEVAGPRTRLRFVTEGLLTRRLLAEPLLPGVGAVV 151 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER LQ DLALALL +Q+ R DLKL+ MSATLD + + L A + SEGR F Sbjct: 152 LDELHERHLQGDLALALLRRLQRTTRPDLKLVAMSATLDAAPVARFL-GAASLRSEGRRF 210 Query: 182 PVERRYL-PLPAHQ---RFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLAS-R 235 V YL P A + R ++ V+ A + R+ G +L+FLPG EI+R +E L+ Sbjct: 211 EVAVEYLSPEEAARPDARLEELVSRAVRRLHREGLDGDVLVFLPGAAEIRRAREALSEWA 270 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + V L PL+G L +Q +A+ + RKV+L+TN+AETS+TIEG+ VVD RV Sbjct: 271 AATAVDLLPLHGDLPPEEQDRAVRAGAR--RKVILSTNVAETSVTIEGVVAVVDSGLARV 328 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 A P +GL L ++VS+AS QRAGRAGR PG +L L + + PEIL+ Sbjct: 329 ASHSPWSGLPTLEVRKVSRASAAQRAGRAGRTRPGRALRLYTRHDHDTRPEFEVPEILRE 388 Query: 356 DLSGLLM--ELLQWGCSDPAQMSWLDQPPVVNL 386 DL+ L+ L+ G ++ WL+ PP L Sbjct: 389 DLAETLLAASALEAG----GRIDWLEPPPPAAL 417 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/316 (29%), Positives = 149/316 (47%), Gaps = 15/316 (4%) Query: 496 FADRIARRR--GQDGRYQLANGMGAMLDANDALSRHEWLIA--------PLLLQGSASPD 545 + DR+ARRR G D L G A LDA + L+A + G+ + + Sbjct: 606 YPDRVARRRAPGSD-EVVLVGGGSARLDAASVVREAALLVAVDAEERRGDRRVPGARAAE 664 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSE 605 AR+ +A V + L+ P ++ + V+W+ A ++A RL L ++ + Sbjct: 665 ARVRIASGVTEEMLLDLFPDALRYEEAVQWNAAAERVEATERLVYEDLVLEESRAPRADP 724 Query: 606 DELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWL 665 +++ + + +G +++ R+ AA P+ A DE L AAL Sbjct: 725 EKVAALLASEALARGPRAFAPEGALDRVVARIAFAAAHAPDSGLVAPTDEELAAALREL- 783 Query: 666 LPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPP 725 G S L+ D+ AL LD + L+ P T+P G + Y PP Sbjct: 784 ---CAGRRSFAELREADLPSALLARLDPRARAALERLAPERVTLPGGRTTRVHYETGKPP 840 Query: 726 ALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKG 785 + R+Q+ FG A P +A G+VPLVL LL+P QR +Q+T DL+ FW+ Y +++E+ Sbjct: 841 WIESRLQDFFGLAQGPALAGGKVPLVLHLLAPNQRAVQVTTDLAGFWERHYPALRRELGR 900 Query: 786 RYPKHVWPDDPANTAP 801 RYP+H WP+DP + P Sbjct: 901 RYPRHAWPEDPRSATP 916 >UniRef50_Q8SQW7 Possible PRE-mRNA SPLICING FACTOR (ATP-DEPENDENT RNA HELICASE) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQW7_ENCCU Length = 664 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 149/436 (34%), Positives = 236/436 (54%), Gaps = 9/436 (2%) Query: 10 LPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLA 69 + E+ L+ + +L+ TG GK+T +P LL GKI+ +PRR+AA ++A+++A Sbjct: 63 MDEIFAKLEKSQVLLIQGDTGCGKTTKIPKYLLRK---YGKIVCSQPRRIAAVSIAKKVA 119 Query: 70 ELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERS 129 + K G+ VGY +R + TRL+ VT+GVL R I+ D L +VI+DE HERS Sbjct: 120 VDMKGKIGEDVGYSIRFDDMSSGRTRLKYVTDGVLLREIKNDKHLKKYDVVIIDEAHERS 179 Query: 130 LQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLP 189 + D+ L L + R DL+++IMSATL++++ V I R FP+E +L Sbjct: 180 VNIDILLGYLKSILSE-RKDLRVVIMSATLNSEKFASFFRCQTVEIRH-RMFPLEIFFLK 237 Query: 190 LPAHQRFDDAVAVATAEMLR-QESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGA 248 + D ++ R +ESG +L+FL G EI +E L +G+D +C +Y Sbjct: 238 KSDVADYVDEAMKTVVQIHRGEESGDILVFLTGRDEINSGREILMEVLGNDAEVCCIYST 297 Query: 249 LSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLI 308 LS +Q + RK+VLATNIAETS+TIEG+R VVD + + R+ G+ L Sbjct: 298 LSPEEQEAVFRKTKK--RKIVLATNIAETSITIEGVRYVVDSGRAKQMRYSASFGMDILE 355 Query: 309 TQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWG 368 +S+A QRAGRAGR + G + +KE+ ++ + PEI +L +++EL G Sbjct: 356 VVWISKAQAKQRAGRAGRTQAGKVFRMYSKEEYQKMDDNTTPEIFCCNLGKIVLELKSIG 415 Query: 369 CSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSA 427 D + +D+P N+ A +L L A+ G+ ++++ G K + + DP LA L+ + Sbjct: 416 VDDIVNFNLIDKPDASNVKKALEMLYYLRAIGGDGKITSIGVKASTIPLDPELAVSLIVS 475 Query: 428 KNDDEAATAAKIAAIL 443 + IAA+L Sbjct: 476 SELGCLEDVSIIAAML 491 >UniRef50_C7RBD8 ATP-dependent helicase HrpA n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBD8_KANKD Length = 1311 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 254/451 (56%), Gaps = 14/451 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 +LPV ++ A++ V+++ TG+GK+T LP + L G+ GKI +PRR+AA Sbjct: 93 ALPVCQARDDVRKAIEENQVVVIAGETGSGKTTQLPKICLQLGLGVYGKIGHTQPRRVAA 152 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE L + G+ VGY +R + T + V+T+G+L I DP L +I Sbjct: 153 TSVARRIAEELKSELGELVGYSIRFNDQSSAVTPVRVMTDGILLNEITHDPLLRQYDTII 212 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVISE 177 +DE HERSL D L + ++ R DLK++I SAT+D +R + AP++ Sbjct: 213 IDEAHERSLNIDFLLGYIRNILPK-RPDLKVIITSATIDVERFSKHFAIDGKPAPILEIS 271 Query: 178 GRSFPVERRYLP----LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 GR++PV+ Y P P+ Q + + A E++ G +L+FL G EI+ + L Sbjct: 272 GRTYPVDVWYRPDDEENPSPQV--ERIGHALDELMSFAPGDILIFLSGEAEIRETAKFLR 329 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + PLY LS+ +Q K P+ G R+++L+TN+AETS+T+ GIR V+D Sbjct: 330 KERFEGCEVLPLYARLSMREQEKIFHPSG-GKRRIILSTNVAETSVTVPGIRFVIDPGFA 388 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R++R+ R + RL +++SQAS QR GR GR+ G+ + L +E ++ EIL Sbjct: 389 RISRYSVRNKIQRLPIEKISQASANQRKGRCGRVADGVCIRLYEEEDFLNRPEFTDAEIL 448 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMA 412 +++L+ +++++ Q G D ++D+P + LL L A++G++ L+ G+KMA Sbjct: 449 RTNLAAVILQMKQLGLGDIEAFPFIDEPAAKQISDGLNLLSELQAVDGKKQLTNIGRKMA 508 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 L +PRLA +L++A+++ A +AA L Sbjct: 509 RLPIEPRLARILLAAEDESCIREALILAAFL 539 >UniRef50_B2UQA6 ATP-dependent helicase HrpA n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQA6_AKKM8 Length = 1231 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 167/436 (38%), Positives = 250/436 (57%), Gaps = 16/436 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAAR 62 LP++ ++L A+ +++ TG+GK+T LP + G G++ +PRRLAA Sbjct: 8 LPISRRRNDILAAMREHQVIVVVGETGSGKTTQLPKMAMELAGEARGRVGCTQPRRLAAA 67 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +V++R+AE LN G VGY++R + G +TRL+ +T+G+L Q DP+L +IL Sbjct: 68 SVSRRVAEELNCDLGGLVGYQVRFEEKAGLDTRLKFMTDGILLAETQHDPDLRQYHTLIL 127 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L + R DL+L+I SATLD + AP++ EGR++P Sbjct: 128 DEAHERSLNIDFLLGYLRLLLG-RRRDLRLVISSATLDAGGFSEFFGGAPIIQVEGRTYP 186 Query: 183 VERRYLP-------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 V+ YLP LPAH A AV + L + G +L+FLPG EI+ V E+L R Sbjct: 187 VDFHYLPPLHDDEELPAHV----ARAVDWLDTL-DDRGDVLVFLPGEREIREVAEKLEGR 241 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + PL+ L L +Q++ P QG R++VLATN+AETSLTI GI V+D RV Sbjct: 242 NLRNTRILPLFARLGLANQQRIFHPE-QGYRRIVLATNVAETSLTIPGIIYVIDSGLARV 300 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +R+ P + RL + VS+AS QRAGR GR+ G+ + L +++ E ++PEI +S Sbjct: 301 SRYSPARQVQRLQIEPVSKASARQRAGRCGRVCEGVCIRLYSEKDWEDRPDFTDPEIRRS 360 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAAL 414 L+G L+ + G + + D P + R L+ +GAL+ R L+ G+K+A L Sbjct: 361 ALAGALLRMKDLGLPEMPEFPLPDPPSSKLVTEGYRTLREIGALDKARQLTPVGRKLARL 420 Query: 415 GNDPRLAAMLVSAKND 430 DPRLA ML+ A+++ Sbjct: 421 PIDPRLARMLLEAQHE 436 >UniRef50_D1H6K3 Whole genome shotgun sequence of line PN40024, scaffold_137.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H6K3_VITVI Length = 1408 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 159/441 (36%), Positives = 247/441 (56%), Gaps = 17/441 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKII-LLEPRRL 59 +LP+A+V L+ + +++ TG+GK+T LP Q L + G +GKII + +PRR+ Sbjct: 766 ALPIASVEKRLVEEVQKNDTLIIVGETGSGKTTQLP-QFLLNGGFCHDGKIIGITQPRRV 824 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA VA+R+AE + G VGY +R ++ +TR++ +T+G+L R DP LS + Sbjct: 825 AAVTVAKRVAEECGVELGQKVGYSIRFEDVTSSSTRIKYMTDGLLLREALLDPFLSRYSV 884 Query: 120 VILDEFHERSLQADLALALLLDVQ----QGLR-DDLKLLIMSATLDNDRLQQMLPEAPVV 174 +I+DE HER++ D+ L LL +VQ QG++ LKL+IMSA+LD + A V Sbjct: 885 IIVDEAHERTIHTDVLLGLLKNVQNARCQGVKFPSLKLIIMSASLDARGFSEYFGGARSV 944 Query: 175 ISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 +GR FPV+ Y D A+ L + G +L+FL G EI+ V+ + Sbjct: 945 YIQGRQFPVDIFYTHHAEPDYVDAALITIFQIHLEEGPGDILVFLTGQEEIESVERLVQE 1004 Query: 235 RI-----GSDVLL-CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 R+ GS LL P++ +L Q KA +PAP G RKV+LATNIAETS+TI GI+ V+ Sbjct: 1005 RLRQLPEGSQKLLTVPIFSSLPSEQQMKAFMPAPAGFRKVILATNIAETSVTIPGIKYVI 1064 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D + ++ TG+ L + S+A QR+GRAGR PG L + + + A + Sbjct: 1065 DPGVVKARTYNAHTGIESLDIVKTSKAQALQRSGRAGRERPGKCFRLYPESEFGQLADST 1124 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQ 407 EPEI + +LS ++++L G D +L++P + ++ + L +LGA+ + +LS Sbjct: 1125 EPEIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRMAIVKSLEQLFLLGAITDDSKLSDP 1184 Query: 408 -GQKMAALGNDPRLAAMLVSA 427 G +MA L DP + L+ A Sbjct: 1185 IGHQMARLPLDPVYSKALILA 1205 >UniRef50_UPI00006CF98F hypothetical protein TTHERM_00419730 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CF98F Length = 782 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 146/476 (30%), Positives = 242/476 (50%), Gaps = 42/476 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-------------- 47 +SLP+ +++ + +++ TG+GKST LP +L I Sbjct: 12 NSLPITEHKQKIIEIVKNNLFCVITGDTGSGKSTQLPQYILDSQEILDVLKENQKKYDLQ 71 Query: 48 NGK--------------IILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN 93 N K +++ +PRR+AA ++A+R+ N GD VGY +R + Sbjct: 72 NNKKSKLNHLHEDNKVSVVITQPRRVAAISMAKRICYERNVSLGDDVGYTIRFDDKTSSK 131 Query: 94 TRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 T L+ +T+G+L R +D LS +VILDE HERSL D+ AL+ + + LKL+ Sbjct: 132 THLKYMTDGILVRECLQDDTLSKYNVVILDEAHERSLYTDVLFALIKQAVKKRQGSLKLI 191 Query: 154 IMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESG 213 + SATL+ D+ + PV+ +G+ + VE RY P+ + R ++++ + L + G Sbjct: 192 VTSATLNTDQFSKFFDNCPVLSMKGKLYNVEVRYKPILMNLRIEESINIIMKIHLNEGPG 251 Query: 214 SLLLFLPGVGEIQRVQEQLASRIGSD---------VLLCPLYGALSLNDQRKAILPAPQG 264 +L+FL G E + + Q R+ D +++ LYG+L DQ++ + P+ Sbjct: 252 DILVFLTGSEECEIAKNQCIERLQKDLENGVELAGMMIFSLYGSLGSEDQQQIFMKTPEN 311 Query: 265 MRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRA 324 RKVV +TNIAETSLTI+ I V+DC + ++PRTG+ LI +SQ QR GRA Sbjct: 312 CRKVVFSTNIAETSLTIDNIGFVIDCGYVKQKCYNPRTGMDALIVVPISQVQAVQRTGRA 371 Query: 325 GRLEPGISLHLIAKE-QAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPV 383 GR + G+ L +K+ E + PEI + L+ +++ L G D +++ P Sbjct: 372 GRTQEGLCFRLYSKKFYDEDMKPHTVPEIKRVSLNSVVLTLKSMGIHDVINFDYMEHPDR 431 Query: 384 VNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSA---KNDDEAAT 435 LL A + L L A+E + R++ G++M +P A L+++ + +DE T Sbjct: 432 EQLLQALKQLYFLQAIEQDGRITDLGKEMNKFPLEPSYAKSLLTSYMLRCEDEMIT 487 >UniRef50_Q6FTI2 Strain CBS138 chromosome G complete sequence n=1 Tax=Candida glabrata RepID=Q6FTI2_CANGA Length = 1057 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 248/466 (53%), Gaps = 24/466 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN---GKIILLEPRRL 59 SLP+ +L + +L TG+GK+T L Q L G G I +PRR+ Sbjct: 340 SLPIYKARANVLQMIRDNQVSILIGETGSGKTTQLA-QYLYEDGYTRDGGLIACTQPRRV 398 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA+R+A+ +++K GD VGY +R ++ GP+T+++ +T+G+L R D L + Sbjct: 399 AAMSVAKRVAQEMDKKVGDLVGYSIRFEDKTGPSTKIKFMTDGILLRETLIDENLEKYKV 458 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I+DE HERSL D+ L LL ++ + RD +K++I SATLD ++ Q P G+ Sbjct: 459 IIIDEAHERSLNTDVLLGLLKNLVKRRRD-IKIIITSATLDANKFSQFFGGLPQYKVPGK 517 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQ--ESGSLLLFLPGVGEI--------QRVQ 229 ++PV+ + + AV+ A L +SG +L+F+ G +I +R+ Sbjct: 518 TYPVQVMHTSGTVPDYVEAAVSQAVRIHLTTAIQSGDILIFMTGQEDILCCIELIKERIV 577 Query: 230 EQLASRIG-------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 + + G DV L P+Y AL Q + L G RK+V++TNIAETSLTI Sbjct: 578 DLYGKKYGINTFDKVDDVELFPIYSALPAEIQNRIFLDLDIGKRKIVVSTNIAETSLTIS 637 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE-QA 341 GIR V+DC ++ ++P+ GL L +S A+ QR+GRAGR PGI+ L ++E + Sbjct: 638 GIRYVIDCGYSKLKVYNPKIGLDSLAIAPISIANANQRSGRAGRTAPGIAYRLYSEETEL 697 Query: 342 ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG 401 Q+ PEI +++LS +++ L G + +LD P + L+A+ L LG L Sbjct: 698 TDMYQQTIPEIKRTNLSNIVLTLKSLGIKNVVDFPFLDPPSIETLMASMYELWFLGVLND 757 Query: 402 E-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP 446 + L+A G+KM P L+ +L+ + + + I A+L P Sbjct: 758 DGELNALGKKMVNFPLQPTLSKVLIQSISFGCSKEVVTIVAMLSVP 803 >UniRef50_C8PMN0 ATP-dependent RNA helicase HrpA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PMN0_9SPIO Length = 898 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 151/440 (34%), Positives = 239/440 (54%), Gaps = 16/440 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRL 59 + LPV +L +L+ +++ +PTG+GK+T LP+ +L G G I + +PRR+ Sbjct: 5 TQLPVYEQKARILESLERHQVIVVESPTGSGKTTQLPV-ILHEAGYTQTGIIGVTQPRRI 63 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +V++ +A L G+ VGY+MR ++ P+T+++++T+G+L + ++ DP LS + Sbjct: 64 AALSVSEFIANQLRVPLGELVGYKMRFEDHTSPDTKIKIMTDGILLQELKLDPWLSKYSV 123 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HERSL D L LL + Q R D K++I SAT++ D E PV+ + Sbjct: 124 IMVDEAHERSLNIDFILGLLKRILQE-RQDFKVIISSATINTDMFSMYFNECPVIKIDAM 182 Query: 180 SFPVERRYLP---------LPAHQRFDDAVAVATAEMLRQ-ESGSLLLFLPGVGEIQRVQ 229 ++PV + P L A D +AV +L + G++L+FLPG I+ Sbjct: 183 TYPVTLIFDPPALTASTETLAAETALLDKIAVIVGRILSEGRPGAILVFLPGERAIKDCI 242 Query: 230 EQLASRIGSDVLL-CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 E+L+ L PLYG LS +Q + P G +K+V+ATNIAETS+TI I V+ Sbjct: 243 ERLSHEPWFRKLYPLPLYGRLSKEEQERVFKSPPFGKKKIVIATNIAETSITINDIAAVI 302 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D ++ ++P T + L VS+AS QR GRAGR + G+ L ++ E + Sbjct: 303 DSGLSKLNFYNPFTYTSSLDEAPVSKASCNQRRGRAGRTQEGVCYRLYTRKDFETRVMYT 362 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQ 407 EI ++DLS ++M + + G D A ++ P ++ A L MLGALE + LS Sbjct: 363 TEEIYRTDLSEVVMRMAELGIYDFANFDFISPPGKKGIIGAVDTLNMLGALESDNSLSKI 422 Query: 408 GQKMAALGNDPRLAAMLVSA 427 GQ M PR + M+V A Sbjct: 423 GQMMCLFPLSPRQSRMIVEA 442 >UniRef50_B4JQ72 GH13648 n=1 Tax=Drosophila grimshawi RepID=B4JQ72_DROGR Length = 698 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 162/440 (36%), Positives = 241/440 (54%), Gaps = 18/440 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKII-LLEPRRLAA 61 SLPV +L L+ +L+ TG+GK+T +P LL NG II + +PRR+AA Sbjct: 71 SLPVYNCRQRILKELEANDTLLIMGETGSGKTTQIPQFLLQAGYANGGIIGITQPRRVAA 130 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +A+R+A+ L G+TVGY +R ++ TR+ +T+G+L R D L ++ Sbjct: 131 ITIAKRVAQELATGIGETVGYTVRFEDATTERTRIRYMTDGILLREAIGDRLLRKYSAIM 190 Query: 122 LDEFHERSLQADLALALLLDVQ----QGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ AD+ ++ Q + LK++I SAT+D D Q + + E Sbjct: 191 LDEAHERTVNADVLFGIVKQAQLERAKQRLPKLKIIITSATMDIDHFGQYFGVRGMYL-E 249 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQEQLA-- 233 GR+ PV R + + + A V ++ R E + +L+FL G EI+ + +Q+ Sbjct: 250 GRTHPV-RVLHAKDSQEDYIHAALVTLFDIHRHEPINHDVLIFLTGQEEIEALAQQIRQL 308 Query: 234 SRIG----SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +RI SDV + LY L+ Q + LP P RK+VLATNIAETS+TI GIR V+D Sbjct: 309 ARINNTGPSDVRVFTLYAQLAQGKQLECFLPVPANTRKIVLATNIAETSITIPGIRCVID 368 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 C + F+P TGL L T R+SQA QR GRAGR PG +K E+ + S Sbjct: 369 CGYVKEKSFNPGTGLELLKTVRISQAQAWQRCGRAGRDAPGKCYRTYSKASMEQFRSTSL 428 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERL--SAQ 407 PEIL+S+L+ +++LL G D + ++D PP + +A R L+ LGA++ L + Sbjct: 429 PEILRSNLTSTVLQLLALGI-DCSNFDFIDAPPPEGISSAHRALEQLGAIKPAPLVITTT 487 Query: 408 GQKMAALGNDPRLAAMLVSA 427 G+ MA DPR A +L+SA Sbjct: 488 GRWMAQFPLDPRYAKLLLSA 507 >UniRef50_Q9P774 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 n=1 Tax=Schizosaccharomyces pombe RepID=PRP16_SCHPO Length = 1173 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 152/452 (33%), Positives = 245/452 (54%), Gaps = 11/452 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLAA 61 LP AV +LL+ + +++ TG+GK+T L Q L G NG I +PRR+AA Sbjct: 492 LPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLA-QFLYEDGYHRNGMIGCTQPRRVAA 550 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + + G TVGY +R ++ GP+T ++ +T+GVL R L ++I Sbjct: 551 MSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVII 610 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ + LL V R D+KLL+ SAT+++ + AP GR++ Sbjct: 611 MDEAHERSLNTDILMGLLKKVL-SRRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTY 669 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PV+ + P + AV L Q +G +L+F+ G +I+ E +A R+ Sbjct: 670 PVDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLNQLHD 729 Query: 239 --DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + + P+Y + + Q K A G+RKVV+ATNIAETSLT+ GI VVD ++ Sbjct: 730 APRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLK 789 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEILQS 355 ++ + G+ L +SQA+ QRAGRAGR PGI+ L + R ++ PEI ++ Sbjct: 790 MYNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAYRLYTEMAYIREMFETTLPEIQRT 849 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 +LS ++ L G + + ++D+PP L+A+ L LGAL+ +L+ G+KM+ Sbjct: 850 NLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLTTLGKKMSLF 909 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEP 446 DP L+ +++ A++ I ++L P Sbjct: 910 PMDPSLSKLIIIAEDYKCTEEIITIVSMLSVP 941 >UniRef50_D0NLP1 Pre-mRNA-splicing factor ATP-dependent RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NLP1_PHYIN Length = 557 Score = 235 bits (599), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 164/452 (36%), Positives = 245/452 (54%), Gaps = 34/452 (7%) Query: 51 IILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQ 109 I+ +PRR+AA +AQR+A+ + + G+ VGY +R + P+ T+++ VT+G+L R Sbjct: 11 IVCTQPRRVAAVTIAQRVAQEMGCQVGEEVGYAVRFEEKWNPDRTKIKFVTDGLLLRETM 70 Query: 110 RDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND------- 162 RDP LS +V+LDE HER+L+ DL L L+ +Q+ R DL+++I SATL D Sbjct: 71 RDPLLSRYSVVMLDEAHERNLETDLLLGLIKKIQRK-RPDLRVIIASATLQVDTFVKFFR 129 Query: 163 --------------RLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEML 208 R QM + V EGR FPV+ YL P A+ A Sbjct: 130 RKEKDPEQVSKSSGRPSQMQNDVVAVSVEGRQFPVDVEYLQEPCGDYLQKAIDTVLAIDE 189 Query: 209 RQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMR-K 267 + G +L+FLPG EI V L R + +L PLYG L L+ Q+ A LP P+G+R K Sbjct: 190 HEGEGDVLVFLPGQEEIDFVVRTLNDRAPTHILSVPLYGTLPLHMQQNAFLPPPRGVRRK 249 Query: 268 VVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRL 327 V++AT IAETS+TIEG+ VVD ++A F+P TG+ LIT VS+AS QRAGRAGR Sbjct: 250 VIVATTIAETSVTIEGVVFVVDGCFTKLAFFNPLTGVEALITAPVSKASAKQRAGRAGRS 309 Query: 328 EPGISLHLIAKEQAERA-AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNL 386 PG L +E +A A ++ P++ +++L+ + + LL G D A ++ P L Sbjct: 310 RPGKCFRLCTQEHFRKALAKETIPQMQRTNLATVALYLLSMGIQDLAHFDFVSPPSPEAL 369 Query: 387 LAAKRLLQMLGALEGER--LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE 444 + A LL LGA++ + + G +MA P LA +L+++ D IA++L Sbjct: 370 IRALELLFSLGAIDADCHLIDPLGTQMAEFPVAPALAKVLLASFRFDCTNEMLSIASVLS 429 Query: 445 EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL 476 +G+ LG SR Q++ Q +++ Sbjct: 430 ----VGDVFLG---SRGSRERQEKIAQAMEQF 454 >UniRef50_D1ZEJ8 Whole genome shotgun sequence assembly, scaffold_22 n=1 Tax=Sordaria macrospora RepID=D1ZEJ8_SORMA Length = 1177 Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 159/457 (34%), Positives = 239/457 (52%), Gaps = 17/457 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING---KIILLEPRRL 59 SLPV A L A+ ++L TG+GK+T +P Q L G K+ +PRR+ Sbjct: 274 SLPVYAYRDAFLDAIKEYQVLILVGETGSGKTTQIP-QYLHEAGYTEGGMKVACTQPRRV 332 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA R+A+ + K G VGY +R ++C T L+ +T+G+L R + P L G Sbjct: 333 AAMSVAARVADEMGVKVGREVGYSIRFEDCTSDKTILKYMTDGMLLREMVTSPTLEGYSA 392 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER++ D+ LAL+ D+ + R DLKL+I SATL+ ++ +AP+ GR Sbjct: 393 IMIDEAHERTVHTDILLALIKDLTRA-RPDLKLIISSATLNAEKFSTYFDDAPIFNVPGR 451 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI----QRVQE---QL 232 PV+ Y P + ++ Q G +L+FL G EI +RV+E +L Sbjct: 452 VHPVDVYYTSAPESNYLEASLVTVFQIHATQPEGGILVFLTGQEEIDKACERVEEIKRKL 511 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 SR+ +++ P+Y + Q K P P G RKVV +TNIAETSLTI+GI V+DC Sbjct: 512 GSRV-PEIIPLPIYANMPSELQAKIFEPTPPGARKVVFSTNIAETSLTIDGIVYVIDCGY 570 Query: 293 ERVARFDP--RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS-E 349 + F P TG + L S+A+ QR GRAGR+ PG L K +S Sbjct: 571 VKENTFSPVGTTGQSTLAVVPCSRAAANQRMGRAGRVRPGKCFRLYTKFAYLSEMDESPT 630 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PEI ++ LS ++++L G D +LD PP L+ + +L LGAL +L+ G Sbjct: 631 PEIQRTSLSSVVLQLKALGIEDLLGFDFLDPPPTELLIKSLNMLYALGALNSAGQLTRVG 690 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE 445 ++M +P LA L++A + I ++L E Sbjct: 691 RQMGEFPAEPMLAKALIAATTEGCVDEMLTIVSMLGE 727 >UniRef50_C5X1W0 Putative uncharacterized protein Sb01g037170 n=2 Tax=Poaceae RepID=C5X1W0_SORBI Length = 692 Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 242/454 (53%), Gaps = 18/454 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 +LPV E L +L ++L TG+GK+T +P +L G++ + + +PRR+A Sbjct: 64 TLPVWQQKEEFLRSLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRRVA 123 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V++R+AE ++ G+ VGY +R ++C T L+ +T+G+L R DP L ++ Sbjct: 124 AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYKVI 183 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER+L D+ LL +V + R DLKL++MSATL+ ++ Q AP++ GR Sbjct: 184 VLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRL 242 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 PVE Y P + A+ + + +G +L+FL G EI+ ++ I + Sbjct: 243 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINNMG 302 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGM-------RKVVLATNIAETSLTIEGIRLV 287 V + PLY L Q+K PAP + RK+V++TNIAETSLTI+GI V Sbjct: 303 DQVGTVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVYV 362 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA-KEQAERAAA 346 +D + ++PR + L+ +S+AS QRAGRAGR +PG L K E Sbjct: 363 IDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDLQP 422 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLS 405 Q+ PEIL+S+L+ ++ L + G D ++D P L+ A +L LGAL+ E L+ Sbjct: 423 QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT 482 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKI 439 G+ M+ DP+++ M D+ A I Sbjct: 483 QLGEMMSEFPLDPQMSKMEAQKAADEAKARFGHI 516 >UniRef50_Q1QXI6 ATP-dependent helicase HrpA n=17 Tax=Gammaproteobacteria RepID=Q1QXI6_CHRSD Length = 1325 Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 181/501 (36%), Positives = 263/501 (52%), Gaps = 28/501 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV +LL ALD V+++ TG+GK+T LP L L G G I +PRRLAAR Sbjct: 82 LPVVERREDLLAALDAHQVVVVAGETGSGKTTQLPKLCLELGLGRRGLIGHTQPRRLAAR 141 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA RLAE L+ G VGY++R + T ++++T+G+L Q DP+L +I+ Sbjct: 142 TVATRLAEELDVPLGAQVGYQVRFTDQTDERTLVKLMTDGILLAETQNDPDLMRYEAIII 201 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----APVVISEG 178 DE HERSL D L L + + R DLK++I SAT+D +R APVV G Sbjct: 202 DEAHERSLNIDFLLGYLKRLTER-RPDLKIIITSATIDVERFSHHFGRDGKPAPVVEVSG 260 Query: 179 RSFPVERRYLPL--PAHQRFDDAV------AVATAEMLRQE----SG--SLLLFLPGVGE 224 R++PV+ Y PL A D + AV E + +E SG +L+FLPG E Sbjct: 261 RTYPVDVFYRPLVRDADDEEDRTLQEGILHAVEEVETIERERRWYSGPRDVLIFLPGERE 320 Query: 225 IQRVQEQL--ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 I+ + L A G+++L PLY LS +Q + P R++VLATN+AETSLT+ Sbjct: 321 IRETADTLRRADLKGTEIL--PLYARLSNAEQNRVF--QPHAGRRIVLATNVAETSLTVP 376 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GIR V+D R++R+ R + RL + +SQAS QR GR GR+ G+ + L ++E Sbjct: 377 GIRYVIDPGLVRMSRYSYRAKVQRLPIEPISQASADQRKGRCGRISEGVCIRLYSEEDFL 436 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE 402 +EPEI +++L+ +++ +L D ++D P + RLL LGA+ + Sbjct: 437 ARPTYTEPEIQRTNLASVILSMLALKLGDIEAFPFVDVPDSRFIKDGYRLLYELGAVGAD 496 Query: 403 -RLSAQGQKMAALGNDPRLAAM-LVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSR 460 RLS G+++A L DPRLA M L A+ T ++A+ + PR +D A Sbjct: 497 NRLSELGRRVARLPIDPRLARMALAGAEQGSLRETLIVVSALSTQDPRDRPADKRQAADE 556 Query: 461 NQPAWQQRSQQLLKRLNVRGG 481 WQ + LN+ G Sbjct: 557 KHRQWQDPESDFMAWLNLWHG 577 >UniRef50_D2JWV9 Putative pre-mRNA splicing factor n=1 Tax=Filobasidiella depauperata RepID=D2JWV9_9TREE Length = 1087 Score = 234 bits (598), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 172/520 (33%), Positives = 262/520 (50%), Gaps = 16/520 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 SLP+ + +L+ A+ +++ TG+GK+T + Q LA G G++ +PR++A Sbjct: 448 SLPIYKLRDQLVAAIRDNQILVVVGDTGSGKTTQMA-QYLAEEGFLERGRLGCTQPRKVA 506 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+AE + + G VGY +R ++ T+++ +T+G+L R + DP+ S ++ Sbjct: 507 AVSVAKRVAEEVGCRLGAEVGYTIRFEDMTSLETKIKYMTDGMLLRELLVDPDCSKYSVL 566 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL + R DLKL+ SATLD + P+ GR+ Sbjct: 567 MLDEAHERTIATDVLFGLLKKACK-RRPDLKLICTSATLDAAKFATYFWGCPIFTIPGRA 625 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 FPVE Y P + ++ L + G +LLFL G EI E L R+ + Sbjct: 626 FPVETLYTKEPEPDYLEASLITILQIHLMEPPGDILLFLTGQEEIDTACEILYERVKALG 685 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++L+ P+Y AL Q + PA G RKVV+ATNIAETS+TI+GI V+D + Sbjct: 686 PQVPELLILPVYAALPSEMQSRIFEPAAPGARKVVIATNIAETSITIDGIYYVIDPGFAK 745 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE--PEI 352 +DP+ G+ LI +SQA QRAGRAGR PG L E A R PEI Sbjct: 746 QNAYDPKLGMDSLIVTPISQAQARQRAGRAGRTGPGKCYRLYT-EIAYRNEMLPNPIPEI 804 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQ-GQKM 411 +++L+ ++ L G +D ++D PP +L A L LGAL+ E L + G+KM Sbjct: 805 QRTNLASTILTLKAMGINDLISFDFMDPPPAATMLTALEQLYALGALDDEGLLTRIGRKM 864 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN--SDLGVAFSRNQPAWQQRS 469 A DP L+ ML+ + + + A I A+L+ ++ D + + Q Sbjct: 865 ADFPLDPPLSKMLIKSVDYGCSEEALTIVAMLQAGGQVFYRPKDKQAQADAKKAKFHQAE 924 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGR 509 LL L V G +S P F A + QD R Sbjct: 925 GDLLTLLTVYNGWKNSKFSNPWCFENFIQTRAMKTAQDVR 964 >UniRef50_Q22ZC0 Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22ZC0_TETTH Length = 699 Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 147/450 (32%), Positives = 243/450 (54%), Gaps = 12/450 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 +LP+ LL + +++ TG GK+T +P Q L G+N I + +PRR+A Sbjct: 40 NLPIFKHRQGLLDKIKSNQISVIAGETGCGKTTQIP-QYLIEEGLNKNRMIAVTQPRRVA 98 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGL 119 A +AQR+A+ +N G+ VGY +R + V N T+L +T+G+L R DP LS + Sbjct: 99 AITIAQRVAQEMNTTVGNKVGYSVRFEEAVDKNNTKLLYMTDGMLLRETIVDPNLSRFSI 158 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER++ +DL ++LL + + R DLK++IMSAT++ ++ ++ EGR Sbjct: 159 IVIDEAHERTINSDLLISLLKQLSER-RKDLKIIIMSATIETEKFANFFETENIIYLEGR 217 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI--- 236 P+E Y P D A+ ++ G +L FL G +I+ +Q+ L +I Sbjct: 218 CHPIEVFYSKKPHADYLDAALNTILQIHFEEQDGDILCFLVGQEDIEDMQQMLEEKIELF 277 Query: 237 ---GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + +C LY AL + Q A + +G RKVVL+TNIAETS+TI+GI+ VVD Sbjct: 278 PKEAKKLNICTLYAALPSHLQLLAFEKSQEGERKVVLSTNIAETSVTIDGIKYVVDPGLV 337 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 + +++P + L+ VS++S QRAGRAGR G L K + A PEIL Sbjct: 338 KTRKYNPNKLIEMLLVVPVSKSSAMQRAGRAGRQSAGKCFRLYTKYTHDTLAEFMLPEIL 397 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMA 412 +S+LS +++++ G D ++D+P + + LQ + AL+ E ++ G++MA Sbjct: 398 RSNLSTVILQMKAIGIKDVKGFQFIDRPHEDQFIESIENLQQMNALDANENITLHGKEMA 457 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAI 442 L +P A ++ A + + + ++AI Sbjct: 458 ELPLEPIYAHFMLVAFATNPNSISVVLSAI 487 >UniRef50_D1BIN2 ATP-dependent helicase HrpA n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BIN2_SANKS Length = 1560 Score = 234 bits (598), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 176/531 (33%), Positives = 260/531 (48%), Gaps = 94/531 (17%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV+A ++ A+ V+++ TG+GK+T LP + L G G+I +PRR+AAR Sbjct: 134 LPVSARREDIAAAIRDHQVVIVAGETGSGKTTQLPKIALELGRGRAGQIGHTQPRRIAAR 193 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA+R+AE + G+ VGY++R + NT ++V+T+G+L IQRDP+L +I+ Sbjct: 194 TVAERIAEEIGTPLGEIVGYQVRFTDTSSENTLVKVMTDGILLAQIQRDPQLLAYDTLII 253 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-------------- 168 DE HERSL D L L + R DLK++I SAT+D+DR + Sbjct: 254 DEAHERSLNIDFILGYLTQLLP-QRPDLKVIITSATIDSDRFARHFAPRDAQDAAKAAAQ 312 Query: 169 ---------------PEAPVVISEGRSFPVERRYLPLP---------AHQRFDDAVAVAT 204 P APVV GR+FPVE RY PL A + + A Sbjct: 313 TEPVDGTDDTSADDAPMAPVVSVTGRTFPVEVRYRPLTPEDSSAKKGAERDLMTGICDAV 372 Query: 205 AEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS---------DVLLCPLYGALSLNDQR 255 E+ + G +L+FL G EI Q+ LAS +G+ V + PLY LS +Q Sbjct: 373 DELCAEGPGDILVFLSGEREILDAQDALASHLGARVNDPRRPDHVEIMPLYARLSAAEQH 432 Query: 256 KAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQA 315 + P R+VVL+TN+AETSLT+ GIR VVD R++R+ T + RL + ++QA Sbjct: 433 RVFQSHPG--RRVVLSTNVAETSLTVPGIRYVVDPGTARISRYSKATKVQRLPIEPIAQA 490 Query: 316 SMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGC----SD 371 S QR+GR GR+ GI++ L +++ +EPEIL++ L+ +L++++ G D Sbjct: 491 SANQRSGRCGRVADGIAIRLYSEDDFLSRPEFTEPEILRTSLASVLLQMISVGVVRTPDD 550 Query: 372 PAQMSWLDQPPVVNLLAAKRLLQMLGALE------------------------------- 400 A+ +++ P + +LL LGALE Sbjct: 551 VARFPFVEPPDTRAIRDGVQLLTELGALETRKPERRGATSRPAGTHVEGGSSAPSDERAS 610 Query: 401 --------GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL 443 G RL+ G+ +A L DPRLA M+V A IAA L Sbjct: 611 RDALGSGGGTRLTETGRAIAQLPMDPRLARMIVEGGRRGAAREVMIIAAAL 661 >UniRef50_Q2Y975 ATP-dependent helicase HrpA n=2 Tax=Proteobacteria RepID=Q2Y975_NITMU Length = 1329 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 251/481 (52%), Gaps = 59/481 (12%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAAR 62 LPV A+ E+ A+ V++S TG+GK+T LP + L G++ I +PRR+AAR Sbjct: 30 LPVVALRQEIAQAIQKNQVVIISGETGSGKTTQLPKICLELGWGLHAMIGHTQPRRIAAR 89 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA R+A L G VGY++R + V P T ++++T+G+L Q DP L +I+ Sbjct: 90 TVAARIASELKSPLGHAVGYKVRFSDKVSPETYVKLMTDGILLAETQGDPNLLAYDTIII 149 Query: 123 DEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 DE HERSL D L L +Q L R DLKL++ SAT++++R APV+ GR Sbjct: 150 DEAHERSLNIDFLLGYL---KQLLPRRPDLKLIVTSATINSERFSAHFHNAPVIEVSGRM 206 Query: 181 FPVERRYLPLPA---------HQRFDD------------------------------AVA 201 +PVE RY P+ A R +D A+ Sbjct: 207 YPVEVRYRPIEAPARAASAIAEDRNEDKAGNKTRDKDKDRQKDKHKDRDRDEGDIEQAIL 266 Query: 202 VATAEMLRQESGSLLLFLPGVGEIQRVQEQL---------ASRIGSDVLLCPLYGALSLN 252 A E+ R G +L+FLPG EI+ E L R G+++L PL+ S Sbjct: 267 DAVDEINRCGPGDVLVFLPGEREIRDTAEALRKHAFGGPGTGRAGAEIL--PLFARQSYA 324 Query: 253 DQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRV 312 DQ + P +R++VLATN+AETSLT+ GIR V+D R+ R+ R + +L +++ Sbjct: 325 DQERVFKPGGSSLRRIVLATNVAETSLTVPGIRYVIDTGVARIKRYSYRNKVEQLQVEKI 384 Query: 313 SQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDP 372 S+AS QRAGR GR+ GI L +++ ++PEIL+S L+ +++ + Sbjct: 385 SRASANQRAGRCGRVMSGICFRLYSEQDYLARPEFTDPEILRSSLAAVILRMKSLKIGSI 444 Query: 373 AQMSWLDQPPVVNLLA-AKRLLQMLGAL-EGERLSAQGQKMAALGNDPRLAAMLVSAKND 430 +L +PP+ ++A +LL LGA+ E L++ G ++A DPR+A M+++AK + Sbjct: 445 ENFPFL-EPPLPRMIADGYQLLAELGAVDESNTLTSIGWRLARFPIDPRIARMILAAKEE 503 Query: 431 D 431 + Sbjct: 504 N 504 >UniRef50_UPI0001698F0D HrpA-like helicase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F0D Length = 418 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 160/340 (47%), Positives = 205/340 (60%), Gaps = 7/340 (2%) Query: 112 PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA 171 P G+GL+I DEFHERSL ADL+LAL LDVQ LR++L+LL+MSATLD + ++L A Sbjct: 3 PSCRGIGLLIFDEFHERSLHADLSLALALDVQGALREELRLLVMSATLDATAVSELLEGA 62 Query: 172 PVVISEGRSFPVERRYLPLPAH-QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 P+V+ EG +PVE YL P +R +AVA A ++L QESG LLLFLPG+GEI+R Sbjct: 63 PLVVGEGTCYPVELHYLGDPPRGRRIAEAVAAAVLQLLPQESGDLLLFLPGIGEIRRTLL 122 Query: 231 QLASRIGSD--VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE--GIRL 286 L R+GSD V+LCPLYG L Q +AI P P G A + LT G R Sbjct: 123 LLQQRLGSDSEVMLCPLYGDLDRAAQDRAIQPDPGGTSPGC-AGYLHCRDLTHHRGGQRR 181 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 R RF P GLTRL T VS+A+ QRAGRAGRL PG L ++ + A Sbjct: 182 CSTVVTSRRPRFLPGLGLTRLETLPVSRAAADQRAGRAGRLGPGRCYRLWSESRHASLPA 241 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLS 405 Q EI ++DL+ L MEL QWG P + WLD PP A+ LL LG L+ + RL+ Sbjct: 242 QHLAEIREADLAPLAMELAQWGIQAPDDLRWLDPPPAAAYAQARDLLIRLGVLDRQGRLT 301 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE 445 A G++MAAL PRLA M++ A + + + A +AA+L E Sbjct: 302 AIGKQMAALPLHPRLAHMVLCAGSPADRSLACDLAALLSE 341 >UniRef50_UPI000186CCEB ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CCEB Length = 695 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 153/448 (34%), Positives = 248/448 (55%), Gaps = 34/448 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KII-LLEPRRLAA 61 LPV L+ ++ +++ TG GK+T +P Q + ING K+I + +PRR+AA Sbjct: 64 LPVYNARQRLINLIEKHEILIIIGETGCGKTTQIP-QFIFEERINGSKMIGVTQPRRVAA 122 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++ R+AE +N G+TVGY +R ++ NT+++ +T+G+L R D +L +I Sbjct: 123 TTLSARVAEEMNTVLGETVGYSIRFEDLTSHNTKIKFLTDGMLLREAILDDKLMQYNFII 182 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDD----LKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ D+ ++ + ++ LK++IMSAT+D D + PVV E Sbjct: 183 LDEAHERTIHTDVLFGIIKKAHKTRKERGLPILKVIIMSATMDVDHFSSYFGDVPVVYLE 242 Query: 178 GRSFPVERRYLPLPAHQRFDDAV--AVATAEMLRQE---SGSLLLFLPGVGEIQRVQEQL 232 GR + VE L A Q DD + ++ T + QE + +L+FL G EI E Sbjct: 243 GRQYSVE----VLHAVQSQDDYLFSSLVTVFQIHQEAPPNEDILVFLTGQEEI----ESF 294 Query: 233 ASRIGSDVL----------LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 A ++ S V + PLY +L +A P P G+RK+V++TNIAETS+TI Sbjct: 295 AFKVKSIVKDLENMTPPLKVLPLYSSLPSLQLAEAFKPTPHGLRKIVISTNIAETSVTIP 354 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GI+ V+D + + F+P TGL L + +SQA QR+GRAGR G + K++ + Sbjct: 355 GIKYVIDSGKVKAKMFNPITGLDMLQVRTISQAQAWQRSGRAGRDSSGHCYRIFTKDEFD 414 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--- 399 + S+PEIL+ +L+ + ++LL G + ++D+PP +L +A L++LGA+ Sbjct: 415 KFDKNSQPEILRCNLASVSLQLLTLGI-NILNFDFMDKPPKESLKSALTELKLLGAIDCV 473 Query: 400 EGERLSAQGQKMAALGNDPRLAAMLVSA 427 E +L+ G++MA DPR + +L+SA Sbjct: 474 EKPQLTKLGKQMAQFPIDPRYSKILLSA 501 >UniRef50_A8NMZ1 ATP-dependent helicase , putative n=1 Tax=Brugia malayi RepID=A8NMZ1_BRUMA Length = 1042 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/398 (36%), Positives = 228/398 (57%), Gaps = 24/398 (6%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 +LPV+ E+L L +L++ TG GKST +P Q L G + +I +PRR+AA Sbjct: 141 NLPVSEKRDEILETLQNVKVLLIAGDTGCGKSTQVP-QYLLDAGYD-RIACTQPRRIAAM 198 Query: 63 NVAQRLA-ELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +A+R+A E LNE G + Y++R + TRL VTEG+L R +Q DPEL+ ++I Sbjct: 199 ALARRVAYETLNEY-GSKIAYQIRFEKTRTLRTRLLFVTEGLLLRQLQTDPELNQYNVII 257 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER+L D L LL ++ + RDDLKL++MSAT++ + Q +APV+ GR + Sbjct: 258 LDEIHERNLSGDFLLGLLHNLLRK-RDDLKLILMSATINLELFQNYFKDAPVIKIAGRLY 316 Query: 182 PVERRYLPLPAHQRFD--------------DAVAVATAEMLRQESGSLLLFLPGVGEIQR 227 P+E RY+P+ H +++ + + + A++ R E G +L+FL GV EI Sbjct: 317 PIELRYMPIKEHNQYESEKKKAKIDPGPYLNILQMIDAKVDRNERGDVLIFLNGVSEIST 376 Query: 228 VQE--QLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 V E ++ + ++ L+ LS +Q K AP G+RK +L+TNIAETS+TI+ IR Sbjct: 377 VAEALKIYAETSKKWVILTLHSTLSTEEQDKVFDIAPLGIRKCILSTNIAETSVTIDQIR 436 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 V+D + + +FD +TG+ L SQAS QR GRAGR PGI L +++ ++ Sbjct: 437 FVIDSGKVNLVKFDSKTGMHSLREYWTSQASADQRKGRAGRTGPGICYRLYSQQHFDKME 496 Query: 346 AQSEPEILQSDLSGLLMEL--LQWGCSDPAQMSWLDQP 381 + EI + L L M++ + G S P + ++++P Sbjct: 497 PFTVSEINRVSLESLAMQIVSMDLGIS-PLEFPFIERP 533 >UniRef50_A2DQS5 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2DQS5_TRIVA Length = 785 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 151/452 (33%), Positives = 240/452 (53%), Gaps = 13/452 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 SLPV LL AL +++ TG+GKST +P Q L N ++ +PRR+AA Sbjct: 149 SLPVFKYKKTLLDALVSNHVLVVVGDTGSGKSTQIP-QYLLERSPNESVVCTQPRRVAAM 207 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+AE + + G VGY +R + T++ +T+G L R DP LS V++ Sbjct: 208 SVAARVAEERHVELGFEVGYAVRFDDKTSEFTKIRYMTDGTLLREFLVDPLLSKYTTVMI 267 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERS+ D+ L+LL D+ Q +R + +L++ SATLD + + P++ GR F Sbjct: 268 DEAHERSISTDILLSLLKDLMQ-VRPEFRLVVASATLDAASMSDFYDKCPILTVPGRRFT 326 Query: 183 VERRYLPLPAHQR----FDDAVAVATAEMLRQESGSLLLFLPGVGEIQR----VQEQLAS 234 V+ Y P D V + T+ + Q +L+FL G EI R + E ++S Sbjct: 327 VDINYTNTPVVDYEIAAIDTVVKIHTSTEIEQPC-DILVFLTGQDEIDRSVAKINELISS 385 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++ +++ PLY AL Q PAP+G RKV+ +TNIAETSLTI+ ++ V+DC + Sbjct: 386 KVINNIEALPLYSALPSERQSLIFKPAPRGTRKVIFSTNIAETSLTIDTVKYVIDCGLVK 445 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ-SEPEIL 353 +D + G + L +S++S QRAGRAGR GI L + E Q ++PEI Sbjct: 446 EMSYDSKNGCSSLDRVPISKSSADQRAGRAGRTSHGICYRLYTESSFEFEHEQMTKPEIK 505 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 + D + L+ L+ G +D +++D P N+++A L L AL+ + L+ G++M+ Sbjct: 506 RCDFAPTLLLLISMGITDIVNFNFVDSPATNNIISAYEQLGALQALDNDGNLTELGEQMS 565 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILE 444 L P A ++ + + + I ++LE Sbjct: 566 QLPVSPMCARAILKSFELGCSESVITICSVLE 597 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P37024 ATP-dependent RNA helicase hrpB n=204 Tax=Gammap... 1057 0.0 UniRef50_Q1JXM2 ATP-dependent helicase HrpB n=1 Tax=Desulfuromon... 898 0.0 UniRef50_Q6LMK3 Hypothetical ATP-dependent helicase HrpB n=3 Tax... 888 0.0 UniRef50_C6D288 ATP-dependent helicase HrpB n=1 Tax=Paenibacillu... 871 0.0 UniRef50_A0KP00 ATP-dependent helicase HrpB n=39 Tax=cellular or... 861 0.0 UniRef50_Q11QG4 ATP-dependent helicase n=1 Tax=Cytophaga hutchin... 860 0.0 UniRef50_B7VJZ7 Helicase n=18 Tax=Vibrionales RepID=B7VJZ7_VIBSL 856 0.0 UniRef50_C8R296 ATP-dependent helicase HrpB n=1 Tax=Desulfurivib... 853 0.0 UniRef50_Q3A1P8 ATP-dependent helicase HrpB n=8 Tax=Desulfuromon... 849 0.0 UniRef50_B0TA29 ATP-dependent helicase hrpb n=3 Tax=Bacteria Rep... 847 0.0 UniRef50_C0Z909 Putative ATP-dependent helicase n=2 Tax=Bacillal... 847 0.0 UniRef50_Q0EYD3 ATP-dependent helicase HrpB n=2 Tax=Proteobacter... 847 0.0 UniRef50_A6Q8R2 ATP-dependent helicase HrpB n=1 Tax=Sulfurovum s... 846 0.0 UniRef50_Q21KE4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 846 0.0 UniRef50_Q4K5J8 ATP-dependent helicase HrpB n=14 Tax=Gammaproteo... 839 0.0 UniRef50_A1TWR1 ATP-dependent helicase HrpB n=3 Tax=Gammaproteob... 836 0.0 UniRef50_D1P961 ATP-dependent helicase HrpB n=1 Tax=Prevotella c... 835 0.0 UniRef50_Q20WW0 ATP-dependent helicase HrpB n=23 Tax=Alphaproteo... 832 0.0 UniRef50_C5BNR7 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 831 0.0 UniRef50_A5VN69 ATP-dependent helicase HrpB n=36 Tax=Proteobacte... 827 0.0 UniRef50_A8H0E4 ATP-dependent helicase HrpB n=20 Tax=Shewanella ... 826 0.0 UniRef50_A9DCL0 ATP-dependent helicase HrpB n=1 Tax=Shewanella b... 824 0.0 UniRef50_C1AEB6 ATP-dependent helicase n=1 Tax=Gemmatimonas aura... 821 0.0 UniRef50_Q15YM0 ATP-dependent helicase HrpB n=1 Tax=Pseudoaltero... 820 0.0 UniRef50_Q0FF79 DEAD/DEAH box helicase n=1 Tax=Rhodobacterales b... 817 0.0 UniRef50_C0QI12 HrpB n=1 Tax=Desulfobacterium autotrophicum HRM2... 816 0.0 UniRef50_A4XYS1 ATP-dependent helicase HrpB n=13 Tax=Gammaproteo... 815 0.0 UniRef50_C7LWJ1 ATP-dependent helicase HrpB n=1 Tax=Desulfomicro... 814 0.0 UniRef50_A0YC48 ATP-dependent helicase HrpB n=1 Tax=marine gamma... 814 0.0 UniRef50_B3EB95 ATP-dependent helicase HrpB n=1 Tax=Geobacter lo... 812 0.0 UniRef50_B9ZJ54 ATP-dependent helicase HrpB n=1 Tax=Thioalkalivi... 809 0.0 UniRef50_Q1ZIP8 Hypothetical ATP-dependent helicase HrpB n=1 Tax... 809 0.0 UniRef50_C5S692 ATP-dependent helicase HrpB n=1 Tax=Allochromati... 808 0.0 UniRef50_A0L6K8 ATP-dependent helicase HrpB n=1 Tax=Magnetococcu... 803 0.0 UniRef50_A8IJC9 ATP-dependent helicase n=43 Tax=cellular organis... 802 0.0 UniRef50_Q6ALG3 Related to ATP-dependent helicase n=1 Tax=Desulf... 800 0.0 UniRef50_Q3BYY2 ATP-dependent helicase HrpB n=20 Tax=Bacteria Re... 800 0.0 UniRef50_Q0VPK1 HrpB protein n=1 Tax=Alcanivorax borkumensis SK2... 799 0.0 UniRef50_B5JVW3 ATP-dependent helicase HrpB n=1 Tax=gamma proteo... 799 0.0 UniRef50_Q72BU1 ATP-dependent helicase HrpB n=3 Tax=Desulfovibri... 798 0.0 UniRef50_A1SSH4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 790 0.0 UniRef50_B8DNU5 ATP-dependent helicase HrpB n=2 Tax=Proteobacter... 788 0.0 UniRef50_B6WQJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 787 0.0 UniRef50_D2UGH8 Probable atp-dependent rna helicase protein n=1 ... 786 0.0 UniRef50_Q3IHM3 ATP-dependent helicase n=3 Tax=Alteromonadales R... 785 0.0 UniRef50_B4X2F5 ATP-dependent helicase HrpB n=1 Tax=Alcanivorax ... 785 0.0 UniRef50_Q31I73 DEAH-box ATP-dependent helicase HrpB n=1 Tax=Thi... 781 0.0 UniRef50_B8J0D1 ATP-dependent helicase HrpB n=1 Tax=Desulfovibri... 779 0.0 UniRef50_A8LHX9 ATP-dependent RNA helicase n=30 Tax=Alphaproteob... 775 0.0 UniRef50_C8WC01 ATP-dependent helicase HrpB n=3 Tax=Zymomonas mo... 773 0.0 UniRef50_Q1GIW4 ATP-dependent helicase HrpB n=3 Tax=Rhodobactera... 773 0.0 UniRef50_Q313C3 ATP-dependent helicase HrpB n=1 Tax=Desulfovibri... 768 0.0 UniRef50_D2QWI1 ATP-dependent helicase HrpB n=1 Tax=Pirellula st... 763 0.0 UniRef50_A5GWY8 HrpA-like helicase n=1 Tax=Synechococcus sp. RCC... 759 0.0 UniRef50_Q47W70 ATP-dependent helicase HrpB n=1 Tax=Colwellia ps... 758 0.0 UniRef50_Q2RRT0 ATP-dependent helicase HrpB n=19 Tax=Bacteria Re... 757 0.0 UniRef50_A3Y8Y8 ATP-dependent helicase HrpB n=1 Tax=Marinomonas ... 751 0.0 UniRef50_D1N9R3 ATP-dependent helicase HrpB n=1 Tax=Victivallis ... 750 0.0 UniRef50_UPI0000E0EA09 ATP-dependent helicase HrpB n=1 Tax=Rhodo... 747 0.0 UniRef50_Q1D7W0 ATP-dependent helicase HrpB n=3 Tax=Cystobacteri... 743 0.0 UniRef50_UPI0001B58540 ATP-dependent helicase HrpB n=2 Tax=Actin... 732 0.0 UniRef50_Q5QVR0 Helicase, ATP-dependent n=1 Tax=Idiomarina loihi... 727 0.0 UniRef50_B1ZU70 Helicase ATP-dependent domain protein n=5 Tax=Ve... 725 0.0 UniRef50_Q0C562 ATP-dependent helicase HrpB n=1 Tax=Hyphomonas n... 724 0.0 UniRef50_D0D680 ATP-dependent helicase HrpB n=1 Tax=Citreicella ... 722 0.0 UniRef50_A4S6B1 Predicted protein n=2 Tax=Mamiellales RepID=A4S6... 721 0.0 UniRef50_C4DH66 ATP-dependent helicase HrpB n=5 Tax=Actinomyceta... 718 0.0 UniRef50_Q7UT94 ATP-dependent helicase n=1 Tax=Rhodopirellula ba... 716 0.0 UniRef50_B0SIC0 HrpA-like helicase n=2 Tax=Leptospira biflexa se... 715 0.0 UniRef50_Q3AZY8 ATP-dependent helicase HrpB n=7 Tax=Chroococcale... 709 0.0 UniRef50_Q1N1U8 ATP-dependent helicase HrpB n=1 Tax=Bermanella m... 706 0.0 UniRef50_A6W7E3 ATP-dependent helicase HrpB n=4 Tax=Actinomyceta... 706 0.0 UniRef50_Q0RIL0 HrpA-like helicase, ATP-dependent n=12 Tax=Bacte... 700 0.0 UniRef50_UPI0001746914 ATP-dependent helicase HrpB n=1 Tax=Verru... 698 0.0 UniRef50_C2CSI0 ATP-dependent helicase n=2 Tax=Corynebacterium R... 696 0.0 UniRef50_A2C686 DEAD/DEAH box helicase:Helicase C-terminal domai... 694 0.0 UniRef50_D1ADU7 ATP-dependent helicase HrpB n=6 Tax=Actinomyceta... 694 0.0 UniRef50_C6WNJ1 ATP-dependent helicase HrpB n=1 Tax=Actinosynnem... 692 0.0 UniRef50_A8HQ16 Predicted protein (Fragment) n=1 Tax=Chlamydomon... 688 0.0 UniRef50_A7BE71 Putative uncharacterized protein n=1 Tax=Actinom... 688 0.0 UniRef50_Q6MIP3 Helicase n=1 Tax=Bdellovibrio bacteriovorus RepI... 685 0.0 UniRef50_B2UM09 Helicase ATP-dependent domain protein n=1 Tax=Ak... 685 0.0 UniRef50_B4S0B6 ATP-dependent helicase HrpB n=2 Tax=Alteromonas ... 682 0.0 UniRef50_Q2G8M4 ATP-dependent helicase HrpB n=5 Tax=Sphingomonad... 678 0.0 UniRef50_C6MXH7 Helicase n=2 Tax=Legionella RepID=C6MXH7_9GAMM 677 0.0 UniRef50_A3WLA9 Helicase, ATP-dependent n=1 Tax=Idiomarina balti... 677 0.0 UniRef50_D1Y978 ATP-dependent helicase HrpB n=3 Tax=Propionibact... 676 0.0 UniRef50_UPI000185C193 ATP-dependent helicase HrpB n=1 Tax=Coryn... 674 0.0 UniRef50_A9FJ06 ATP-dependent RNA helicase n=1 Tax=Sorangium cel... 669 0.0 UniRef50_C7JEP3 DNA helicase HrpB n=8 Tax=Acetobacter pasteurian... 668 0.0 UniRef50_C0WHI1 ATP-dependent helicase n=4 Tax=Corynebacterium R... 666 0.0 UniRef50_A6DMD8 ATP-dependent helicase HrpB n=1 Tax=Lentisphaera... 658 0.0 UniRef50_D2B686 ATP-dependent helicase HrpB n=1 Tax=Streptospora... 654 0.0 UniRef50_Q11S69 ATP-dependent helicase n=2 Tax=Sphingobacteriale... 648 0.0 UniRef50_A6W340 ATP-dependent helicase HrpB n=1 Tax=Marinomonas ... 643 0.0 UniRef50_D2JWV9 Putative pre-mRNA splicing factor n=1 Tax=Filoba... 643 0.0 UniRef50_C0W153 ATP-dependent helicase HrpB n=1 Tax=Actinomyces ... 643 0.0 UniRef50_Q14562 ATP-dependent RNA helicase DHX8 n=78 Tax=Eukaryo... 641 0.0 UniRef50_C8NRG4 ATP-dependent helicase n=10 Tax=Corynebacterium ... 639 0.0 UniRef50_C0NP73 ATP-dependent RNA helicase DHX8 n=10 Tax=Dikarya... 638 0.0 UniRef50_A5G2H1 ATP-dependent helicase HrpB n=2 Tax=Alphaproteob... 638 0.0 UniRef50_Q01ZA3 ATP-dependent helicase HrpB n=2 Tax=Acidobacteri... 637 0.0 UniRef50_Q09530 Probable pre-mRNA-splicing factor ATP-dependent ... 637 0.0 UniRef50_Q54MH3 Putative pre-mRNA-splicing factor ATP-dependent ... 636 0.0 UniRef50_Q7PT33 AGAP007212-PA n=4 Tax=cellular organisms RepID=Q... 634 e-180 UniRef50_C0SAG2 Pre-mRNA-splicing factor ATP-dependent RNA helic... 633 e-179 UniRef50_UPI000050FB42 ATP-dependent helicase n=1 Tax=Brevibacte... 631 e-179 UniRef50_B0JZ95 Dhx16 protein n=5 Tax=Fungi/Metazoa group RepID=... 631 e-179 UniRef50_D0LYT6 ATP-dependent helicase HrpB n=1 Tax=Haliangium o... 631 e-179 UniRef50_C4QEZ9 ATP-dependent RNA Helicase, putative n=21 Tax=Eu... 630 e-179 UniRef50_O45244 Probable pre-mRNA-splicing factor ATP-dependent ... 629 e-178 UniRef50_Q6BRT9 DEHA2D13882p n=8 Tax=Saccharomycetales RepID=Q6B... 626 e-177 UniRef50_A7AWE8 RNA helicase, putative n=2 Tax=Piroplasmida RepI... 624 e-177 UniRef50_A6GDN5 ATP-dependent helicase HrpB n=1 Tax=Plesiocystis... 623 e-176 UniRef50_Q10752 Pre-mRNA-splicing factor ATP-dependent RNA helic... 622 e-176 UniRef50_B5ZE33 ATP-dependent helicase HrpB n=4 Tax=Acetobactera... 620 e-176 UniRef50_B6ADS3 DHX8/prp22-type ATP-dependent RNA helicase, puta... 619 e-175 UniRef50_O22899 Probable pre-mRNA-splicing factor ATP-dependent ... 616 e-175 UniRef50_O60231 Putative pre-mRNA-splicing factor ATP-dependent ... 616 e-175 UniRef50_B2GHK7 ATP-dependent helicase n=7 Tax=Actinomycetales R... 616 e-174 UniRef50_B2ANS3 Predicted CDS Pa_6_9920 n=3 Tax=Saccharomyceta R... 615 e-174 UniRef50_C4JEY7 ATP-dependent RNA helicase DHX8 n=25 Tax=cellula... 614 e-174 UniRef50_A7ASE9 RNA helicase, putative n=1 Tax=Babesia bovis Rep... 613 e-173 UniRef50_C4Y9K0 Putative uncharacterized protein n=1 Tax=Clavisp... 612 e-173 UniRef50_Q6P404 DEAH (Asp-Glu-Ala-His) box polypeptide 38 n=9 Ta... 611 e-173 UniRef50_P24384 Pre-mRNA-splicing factor ATP-dependent RNA helic... 611 e-173 UniRef50_Q75EQ9 AAR020Wp n=2 Tax=Saccharomycetaceae RepID=Q75EQ9... 610 e-173 UniRef50_C4QXH4 DEAH-box RNA-dependent ATPase/ATP-dependent RNA ... 609 e-173 UniRef50_Q54NJ4 Putative pre-mRNA-splicing factor ATP-dependent ... 608 e-172 UniRef50_Q5KGT3 Pre-mRNA splicing factor, putative n=7 Tax=Dikar... 605 e-171 UniRef50_C4M6S9 Helicase, putative n=3 Tax=Entamoeba RepID=C4M6S... 605 e-171 UniRef50_P45018 ATP-dependent RNA helicase hrpA homolog n=53 Tax... 604 e-171 UniRef50_C5KUX0 ATP-dependent RNA helicase DHX8, putative n=1 Ta... 604 e-171 UniRef50_D1ZEJ8 Whole genome shotgun sequence assembly, scaffold... 604 e-171 UniRef50_A0D4B2 Chromosome undetermined scaffold_37, whole genom... 603 e-171 UniRef50_Q9P774 Pre-mRNA-splicing factor ATP-dependent RNA helic... 601 e-170 UniRef50_P43329 ATP-dependent RNA helicase hrpA n=101 Tax=Bacter... 601 e-170 UniRef50_Q92620 Pre-mRNA-splicing factor ATP-dependent RNA helic... 601 e-170 UniRef50_Q65SL6 HrpA protein n=9 Tax=Pasteurellaceae RepID=Q65SL... 598 e-169 UniRef50_B6AI28 Pre-mRNA-processing protein 8, putative n=1 Tax=... 597 e-169 UniRef50_B7VPK9 ATP-dependent helicase n=201 Tax=Bacteria RepID=... 597 e-169 UniRef50_A3FQE8 Putative uncharacterized protein n=2 Tax=Cryptos... 597 e-169 UniRef50_UPI00016C44CB ATP-dependent helicase HrpB n=1 Tax=Gemma... 597 e-169 UniRef50_B3PC35 Putative HrpA-like helicase n=1 Tax=Cellvibrio j... 595 e-168 UniRef50_B9XI99 Helicase-associated domain protein n=1 Tax=bacte... 593 e-168 UniRef50_C4QXR9 Putative uncharacterized protein n=1 Tax=Pichia ... 593 e-168 UniRef50_Q3JBJ6 ATP-dependent helicase HrpA n=3 Tax=Chromatiacea... 591 e-167 UniRef50_Q5ANN5 Likely spliceosomal DEAD box ATPase n=3 Tax=Euka... 591 e-167 UniRef50_B9WE17 Pre-mRNA-splicing factor ATP-dependent RNA helic... 591 e-167 UniRef50_P53131 Pre-mRNA-splicing factor ATP-dependent RNA helic... 588 e-166 UniRef50_B7A9M0 ATP-dependent helicase HrpB n=1 Tax=Thermus aqua... 588 e-166 UniRef50_C5SLZ8 ATP-dependent helicase HrpB (Fragment) n=1 Tax=A... 586 e-165 UniRef50_B6JZW3 ATP-dependent RNA helicase Prp16 n=1 Tax=Schizos... 584 e-165 UniRef50_C5X1W0 Putative uncharacterized protein Sb01g037170 n=2... 584 e-165 UniRef50_Q759P9 ADR224Wp n=2 Tax=Saccharomycetaceae RepID=Q759P9... 582 e-164 UniRef50_Q47MH0 ATP-dependent helicase HrpA n=13 Tax=Bacteria Re... 582 e-164 UniRef50_B6AHK6 Pre-mRNA-splicing factor ATP-dependent RNA helic... 580 e-164 UniRef50_A4BBY9 ATP-dependent helicase HrpB n=1 Tax=Reinekea bla... 580 e-164 UniRef50_Q1N0P2 ATP-dependent helicase HrpA n=1 Tax=Bermanella m... 579 e-163 UniRef50_A5E397 Putative uncharacterized protein n=1 Tax=Loddero... 579 e-163 UniRef50_C5DJP0 KLTH0F17974p n=2 Tax=Saccharomycetaceae RepID=C5... 579 e-163 UniRef50_A2EVN8 Helicase, putative n=1 Tax=Trichomonas vaginalis... 579 e-163 UniRef50_Q5CYX6 Prp16p pre-mRNA splicing factor. HrpA family SFI... 578 e-163 UniRef50_Q6AL39 Related to ATP-dependent helicase HrpA n=1 Tax=D... 576 e-162 UniRef50_Q21LQ8 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 574 e-162 UniRef50_A6VYA9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 574 e-162 UniRef50_D1H6K3 Whole genome shotgun sequence of line PN40024, s... 573 e-162 UniRef50_A9US44 Predicted protein n=1 Tax=Monosiga brevicollis R... 573 e-161 UniRef50_Q31H28 ATP-dependent helicase HrpA n=1 Tax=Thiomicrospi... 573 e-161 UniRef50_Q7XIR8 Os07g0508000 protein n=4 Tax=Embryophyta RepID=Q... 572 e-161 UniRef50_Q4N829 RNA helicase, putative n=2 Tax=Theileria RepID=Q... 572 e-161 UniRef50_Q55CD3 DEAD/DEAH box helicase n=2 Tax=Eukaryota RepID=Q... 571 e-161 UniRef50_Q6CF95 YALI0B09053p n=1 Tax=Yarrowia lipolytica RepID=Q... 571 e-161 UniRef50_Q1C7D5 ATP-dependent helicase HrpA n=4 Tax=Bacteria Rep... 571 e-161 UniRef50_B0ECA9 Pre-mRNA-splicing factor ATP-dependent RNA helic... 570 e-161 UniRef50_Q2Y975 ATP-dependent helicase HrpA n=2 Tax=Proteobacter... 570 e-161 UniRef50_Q0S1M3 ATP-dependent helicase hrpA n=5 Tax=Corynebacter... 569 e-160 UniRef50_A7AVM7 DEAH box RNA helicase, putative n=3 Tax=Piroplas... 569 e-160 UniRef50_Q47AH6 ATP-dependent helicase HrpA n=7 Tax=Betaproteoba... 569 e-160 UniRef50_A2EN72 Helicase, putative n=1 Tax=Trichomonas vaginalis... 569 e-160 UniRef50_B5JXZ9 ATP-dependent helicase HrpA n=1 Tax=gamma proteo... 569 e-160 UniRef50_A5DZ49 Pre-mRNA splicing factor ATP-dependent RNA helic... 568 e-160 UniRef50_B8KHJ8 ATP-dependent helicase HrpA n=1 Tax=gamma proteo... 568 e-160 UniRef50_A9GK92 ATP-dependent helicase HrpA n=2 Tax=Myxococcales... 567 e-160 UniRef50_B0ECZ2 ATP-dependent RNA helicase, putative n=2 Tax=Ent... 566 e-160 UniRef50_Q6FTI2 Strain CBS138 chromosome G complete sequence n=1... 566 e-159 UniRef50_C7RBD8 ATP-dependent helicase HrpA n=1 Tax=Kangiella ko... 566 e-159 UniRef50_A1U107 ATP-dependent helicase HrpA n=4 Tax=Gammaproteob... 565 e-159 UniRef50_Q2LSZ0 ATP-dependent helicase n=1 Tax=Syntrophus acidit... 565 e-159 UniRef50_B3L2J4 Atp-dependant rna helicase, putative n=1 Tax=Pla... 565 e-159 UniRef50_Q9H5Z1 Probable ATP-dependent RNA helicase DHX35 n=44 T... 564 e-159 UniRef50_D1N0X8 ATP-dependent helicase HrpA n=1 Tax=Victivallis ... 564 e-159 UniRef50_B9WL64 Pre-mRNA-splicing factor ATP-dependent RNA helic... 563 e-159 UniRef50_Q9BKQ8 Probable ATP-dependent RNA helicase DHX35 homolo... 563 e-159 UniRef50_Q03319 Probable ATP-dependent RNA helicase prh1 n=2 Tax... 562 e-158 UniRef50_A4BTJ3 ATP-dependent helicase HrpA n=1 Tax=Nitrococcus ... 561 e-158 UniRef50_B5GG28 ATP-dependent helicase n=3 Tax=Streptomyces RepI... 561 e-158 UniRef50_D0MZQ2 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 561 e-158 UniRef50_Q0F3B4 ATP-dependent helicase HrpA n=1 Tax=Mariprofundu... 560 e-158 UniRef50_C1ZJL9 ATP-dependent helicase HrpA n=1 Tax=Planctomyces... 560 e-158 UniRef50_Q9VR29 CG3225 n=19 Tax=Neoptera RepID=Q9VR29_DROME 560 e-158 UniRef50_B8FCF5 ATP-dependent helicase HrpA n=1 Tax=Desulfatibac... 559 e-157 UniRef50_A3YEF6 ATP-dependent helicase HrpA n=1 Tax=Marinomonas ... 559 e-157 UniRef50_D0W5V2 ATP-dependent helicase HrpA n=3 Tax=Neisseria Re... 559 e-157 UniRef50_A4VNQ0 ATP-dependent helicase HrpA n=32 Tax=Proteobacte... 558 e-157 UniRef50_C1DAE5 HrpA n=2 Tax=Betaproteobacteria RepID=C1DAE5_LARHH 558 e-157 UniRef50_P15938 Pre-mRNA-splicing factor ATP-dependent RNA helic... 558 e-157 UniRef50_C0H5K5 Splicing factor, putative n=2 Tax=Plasmodium fal... 558 e-157 UniRef50_A8IHD9 DEAH-box nuclear pre-mRNA splicing factor n=2 Ta... 557 e-157 UniRef50_B7GWG2 ATP-dependent helicase HrpA n=17 Tax=Acinetobact... 557 e-157 UniRef50_B9Z2A4 ATP-dependent helicase HrpA n=1 Tax=Lutiella nit... 557 e-157 UniRef50_A7E6W3 Putative uncharacterized protein n=1 Tax=Sclerot... 556 e-156 UniRef50_Q1YSZ9 ATP-dependent helicase HrpA n=2 Tax=unclassified... 556 e-156 UniRef50_C0QAN7 HrpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 556 e-156 UniRef50_C9ZMN0 ATP-dependent RNA helicase, putative n=4 Tax=Try... 556 e-156 UniRef50_Q482P9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 556 e-156 UniRef50_B5JKC1 ATP-dependent helicase HrpA n=5 Tax=Bacteria Rep... 556 e-156 UniRef50_A6C1G8 ATP-dependent helicase HrpA n=1 Tax=Planctomyces... 556 e-156 UniRef50_P20095 Pre-mRNA-splicing factor ATP-dependent RNA helic... 556 e-156 UniRef50_C8RUP0 Probable ATP-dependent rna helicase protein n=2 ... 555 e-156 UniRef50_C5C946 ATP-dependent helicase HrpB n=2 Tax=Micrococcus ... 555 e-156 UniRef50_D0WKL4 ATP-dependent helicase HrpA n=1 Tax=Actinomyces ... 555 e-156 UniRef50_UPI000186CCEB ATP-dependent RNA helicase, putative n=1 ... 554 e-156 UniRef50_A5DRX8 Putative uncharacterized protein n=1 Tax=Loddero... 554 e-156 UniRef50_B6BTD8 ATP-dependent helicase HrpA n=2 Tax=Betaproteoba... 554 e-156 UniRef50_A5AMC2 Putative uncharacterized protein n=2 Tax=Eukaryo... 554 e-156 UniRef50_A5DQ95 Putative uncharacterized protein n=2 Tax=Pichia ... 552 e-155 UniRef50_A4S4Y0 Predicted protein n=3 Tax=Mamiellales RepID=A4S4... 552 e-155 UniRef50_C5DCP1 KLTH0B04664p n=2 Tax=Saccharomycetales RepID=C5D... 552 e-155 UniRef50_B2U9W9 ATP-dependent helicase HrpA n=11 Tax=Betaproteob... 552 e-155 UniRef50_B4JQ72 GH13648 n=1 Tax=Drosophila grimshawi RepID=B4JQ7... 551 e-155 UniRef50_UPI000050FFFD ATP-dependent helicase n=1 Tax=Brevibacte... 551 e-155 UniRef50_Q9H6R0 Putative ATP-dependent RNA helicase DHX33 n=37 T... 551 e-155 UniRef50_B1VE65 Putative ATP-dependent helicase n=1 Tax=Coryneba... 550 e-155 UniRef50_A2DQS5 Helicase, putative n=1 Tax=Trichomonas vaginalis... 550 e-155 UniRef50_Q3SHC5 ATP-dependent helicase HrpA n=3 Tax=Betaproteoba... 550 e-154 UniRef50_D0A429 Pre-mRNA splicing factor ATP-dependent RNA helic... 549 e-154 UniRef50_A5EVC9 ATP-dependent helicase HrpA n=1 Tax=Dichelobacte... 548 e-154 UniRef50_C0VVM1 HrpA family ATP-dependent helicase n=2 Tax=Coryn... 548 e-154 UniRef50_B9H2M0 Predicted protein n=9 Tax=Embryophyta RepID=B9H2... 547 e-154 UniRef50_A2D7A5 Helicase, putative n=1 Tax=Trichomonas vaginalis... 546 e-153 UniRef50_C8N990 ATP-dependent helicase HrpA n=1 Tax=Cardiobacter... 545 e-153 UniRef50_C5BR02 ATP-dependent helicase HrpA n=1 Tax=Teredinibact... 545 e-153 UniRef50_Q38AN5 Pre-mRNA splicing factor ATP-dependent RNA helic... 544 e-153 UniRef50_Q9VL25 CG4901 n=10 Tax=Drosophila RepID=Q9VL25_DROME 544 e-153 UniRef50_D0LBQ9 ATP-dependent helicase HrpA n=2 Tax=Corynebacter... 544 e-153 UniRef50_A0Z814 Helicase, ATP-dependent n=3 Tax=unclassified Gam... 544 e-153 UniRef50_B6H7B9 Pc16g02360 protein n=34 Tax=Leotiomyceta RepID=B... 544 e-153 UniRef50_D1IUD7 Whole genome shotgun sequence of line PN40024, s... 543 e-153 UniRef50_Q9FZC3 T1K7.25 protein n=12 Tax=Embryophyta RepID=Q9FZC... 543 e-152 Sequences not found previously or not previously below threshold: >UniRef50_P37024 ATP-dependent RNA helicase hrpB n=204 Tax=Gammaproteobacteria RepID=HRPB_ECOLI Length = 809 Score = 1057 bits (2735), Expect = 0.0, Method: Composition-based stats. Identities = 809/809 (100%), Positives = 809/809 (100%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA Sbjct: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV Sbjct: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS Sbjct: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV Sbjct: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP Sbjct: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL Sbjct: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL Sbjct: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG Sbjct: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG 540 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG Sbjct: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG 540 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL Sbjct: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 Query: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA Sbjct: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 Query: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH Sbjct: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 Query: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ Sbjct: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 Query: 781 KEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 KEMKGRYPKHVWPDDPANTAPTRRTKKYS Sbjct: 781 KEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 >UniRef50_Q1JXM2 ATP-dependent helicase HrpB n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXM2_DESAC Length = 834 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 356/838 (42%), Positives = 489/838 (58%), Gaps = 35/838 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ +LP+LL L V+L A GAGK+T +PL LL + G +II+LEPRRL Sbjct: 1 MMPLPIDHILPQLLAELQTHDSVVLQAEPGAGKTTRVPLALLDAEWLQGQRIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA + A+ ++ L E+PG TVGY +R Q V TR+EVVTEGVLTR +Q DP L GVGL Sbjct: 61 AAVHAARYMSRQLGEEPGQTVGYTIRHQQAVSKQTRIEVVTEGVLTRRLQNDPTLDGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHER+LQADL +AL+ DV+ LRDDLK+L+MSATLD L PVV S+GR Sbjct: 121 IIFDEFHERALQADLGMALVGDVRAALRDDLKVLVMSATLDGAALADYFGGCPVVPSDGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 +PVE +L R + V+ A + + ++ G +L+FLPG EIQR LA R+ D Sbjct: 181 CYPVEVFHLG--DDDRLEVQVSRAVHKAVAEQPGDVLVFLPGAREIQRCCNALAGRLDGD 238 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 +L+ PLYGAL Q++AI P RKVVLATNIAETSLTIEG+R+V+D ER+ F+ Sbjct: 239 ILVLPLYGALPFEQQQQAIQ--PTTRRKVVLATNIAETSLTIEGVRVVIDSGLERLMTFE 296 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 PRTG+ RL+T+R+SQAS+ QR+GRAGR G L + + PEIL+SDL+ Sbjct: 297 PRTGMNRLVTRRISQASVRQRSGRAGRTAAGACYRLWSPQAEAAMIDYVAPEILRSDLTS 356 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDP 418 L +EL+ WG ++ + W+D PP ++ AA LL L A++ +R L+ G+ M L P Sbjct: 357 LALELIAWGVTEADALPWVDAPPAAHMNAAFNLLLQLDAIDEQRRLTTVGRAMTRLPLHP 416 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEP--------PRMGNSDLGVAFSRNQPA------ 464 RLA MLV+A++++E A ++A +LE P + +SDL + QP Sbjct: 417 RLARMLVAAEDENEQVLACQLAVVLESPQWFRSGQSDTVSDSDLLDHLEQWQPHGKKSSS 476 Query: 465 -----WQQRSQQLLKRLNVRG---GEADSSLIAPLLAGAFADRIARRR-----GQDGRYQ 511 Q +QL +RL +S + LL A+ DR+A++R G + Sbjct: 477 RISPLAHQSYRQLCRRLGCSPTTTPSRNSVALGRLLIAAYPDRVAQKRDGSIEGSTDHFL 536 Query: 512 LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 L+NG GA L + +H WL+A + + SAS +A I A +D +L P V Sbjct: 537 LSNGRGARLSPRCRVRQHRWLVAVDV-EFSASGEALIHRASALDERQLDNMWPHPVNWQM 595 Query: 572 TVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 WDD+ + + G L + +P A ++ +L IR GL LNWT E Sbjct: 596 ETVWDDSGQRVVTREARRWGALLLSSRPHA-LDAEQALPIVLEQIRSGGLERLNWTKETL 654 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 LR R+ + DWP VDD +LL +L WL P + G+ L + L++ + L LL Sbjct: 655 CLRQRMAFVQQHQLVDDWPQVDDAALLDSLNVWLAPWLNGMSRLDQVAKLNLLEPLCSLL 714 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 W +Q+LD P TVP+GSRIA+ Y + + P LA ++QE+FG P I +GRVP++ Sbjct: 715 SWPQRQQLDELAPERLTVPSGSRIAVDYSDPHQPVLAAKLQELFGWQQTPRIGKGRVPVM 774 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 L LLSPA+RP+Q T DL++FW Y EV+KE+KGRYPKH WPDDP R KK S Sbjct: 775 LHLLSPARRPMQTTTDLANFWATTYDEVKKELKGRYPKHPWPDDPLQAPAQRGVKKRS 832 >UniRef50_Q6LMK3 Hypothetical ATP-dependent helicase HrpB n=3 Tax=Gammaproteobacteria RepID=Q6LMK3_PHOPR Length = 836 Score = 888 bits (2295), Expect = 0.0, Method: Composition-based stats. Identities = 422/836 (50%), Positives = 561/836 (67%), Gaps = 29/836 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-------GKIIL 53 MS LP+ VLP+LLT L +PQ++L AP GAGKST LPL+LLA G+II+ Sbjct: 1 MSQLPIDTVLPDLLTTLAISPQLILKAPPGAGKSTRLPLELLASRSKAIRGGARFGRIIM 60 Query: 54 LEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPE 113 LEPRRLAARN+A L++ L E+ G+TVG R+R ++ V T+LE+VTEGV+TRM+Q+DPE Sbjct: 61 LEPRRLAARNIANYLSKQLGERVGETVGLRVRGESKVSKATQLEIVTEGVMTRMLQQDPE 120 Query: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPV 173 L G+ L+I DEFHERS+ AD ALAL L+VQ+ LRDDLKLL+MSATLD D L+ +LP+A Sbjct: 121 LKGIDLLIFDEFHERSIHADTALALALEVQEALRDDLKLLVMSATLDADALKGLLPDAGY 180 Query: 174 VISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 + S GR FPVE RY + H + ++ T ++L ESGS+L+FLPG GEI+R+ L Sbjct: 181 IESYGRCFPVEYRYKSVSDHYQLLESCCRETLQLLDAESGSILIFLPGAGEIKRLAGMLT 240 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R+ +VL+ PL+G LS Q++AI+PAP+G RKVVLATNIAETSLTIEGIRLVVDC + Sbjct: 241 ERVADNVLISPLFGQLSNEQQQQAIMPAPKGQRKVVLATNIAETSLTIEGIRLVVDCGLK 300 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R+A +DP+TG++RL R++Q+S QRAGRAGRLEPGI + L ++EQ R +PEIL Sbjct: 301 RIALWDPKTGISRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEEQLSRQPMTPQPEIL 360 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 ++DL+ L MEL QWGC+D +++ W D PP LL ++RLLQ LG ++ +L+ G++ Sbjct: 361 RADLTSLAMELAQWGCNDASELRWSDMPPQPALLQSRRLLQQLGIMDQRFQLTDVGKQTQ 420 Query: 413 ALGNDPRLAAMLVSAKNDD---------EAATAAKIAAILEEPPRMGNS-DLGVAFS--- 459 +G DPR A ML++A+ D TAA + A+LE+PPR NS DL + Sbjct: 421 TMGTDPRHAVMLIAAQQFDANHTSGSTLAMTTAALLVALLEDPPRGMNSPDLHFQLNLLE 480 Query: 460 ----RNQPAWQQRSQQLLKRLNV---RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 +Q R++Q L +LN + IAP++A + DRIA RG DGRYQL Sbjct: 481 SGKLPRARQYQLRAKQHLAKLNQSASLSLSISAEWIAPIMAAGYPDRIALSRGTDGRYQL 540 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 +NG G ML A++ ++ L+ +++ D+R+ + D + L + P L + + Sbjct: 541 SNGQGVMLPADEPMANEAMLVVADVVKTR-QGDSRVFSCVATDSNRLQELLPHLFSEREW 599 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 ++WDD +G L A + L G+L ++ + P + +A+LN I KGLSVL W + Sbjct: 600 LDWDDKKGRLTAEKHLCCGKLILQRSVMDTPDPAKASEALLNAIMRKGLSVLPWNEKTSN 659 Query: 633 LRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 L R CA +WLP+ P +DDE+LLA E WLLP MTG+ +L+ + LD+ AL L Sbjct: 660 LLTRARCAHEWLPDLGLPEMDDETLLADAEQWLLPFMTGITTLKSIARLDLKAALEARLG 719 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 W + LD LP H+ VPTGSR IRY + PALAVRMQEMFGE T+P IA GRVPLVL Sbjct: 720 WEQAKTLDVVLPTHFQVPTGSRYPIRYQVGHKPALAVRMQEMFGEKTSPQIANGRVPLVL 779 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ELLSPAQRPLQIT+DL+ FW+G+YR+VQKEMKGRYPKHVWPDDPAN PTRRTKKY Sbjct: 780 ELLSPAQRPLQITQDLAAFWQGSYRDVQKEMKGRYPKHVWPDDPANHLPTRRTKKY 835 >UniRef50_C6D288 ATP-dependent helicase HrpB n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D288_PAESJ Length = 830 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 368/835 (44%), Positives = 507/835 (60%), Gaps = 31/835 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ AVLPELL AL +L A GAGK+T +PL LL ++G KI++LEPRRL Sbjct: 1 MKQLPIDAVLPELLQALRVGTNAVLVAEPGAGKTTRVPLALLQETWLDGRKIVMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+ A+ +A L E+ G+TVGYR+R + V TR+EVVTEGVLTRM+Q D L VG Sbjct: 61 AARSAAKYMAASLGEQVGETVGYRVRLDSKVSAKTRIEVVTEGVLTRMLQEDQALERVGA 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 V+ DEFHER L DL LAL L Q LR+DL+LLIMSATLD + + ++L AP++ S GR Sbjct: 121 VLFDEFHERHLHGDLGLALTLQSQSLLREDLRLLIMSATLDAEPVAELLGGAPIIQSSGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL-ASRIGS 238 ++PVE Y R + A E +R+ G +L+FLPGVGEI+R L S + S Sbjct: 181 AYPVETIYRSTRVEGRIESQAASTIVEAIRENEGDVLVFLPGVGEIRRTAGHLMQSGLAS 240 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 V + L+G L L Q A+ P G RKVVLAT+IAE+SLT+EGIR+VVDC RV +F Sbjct: 241 SVRIAELHGNLPLEAQDAAVAPCKPGERKVVLATSIAESSLTVEGIRIVVDCGLMRVPKF 300 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 PRTG+TRL T VSQAS QR GRAGRL PG+ L +++ ++PE+L++DL+ Sbjct: 301 SPRTGMTRLETVSVSQASADQRRGRAGRLAPGVCYRLWTEQEHPYLPQHNKPELLEADLA 360 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGND 417 L +EL WG ++P ++ WLD PP A LL++L AL+ + R++++G +MA LG Sbjct: 361 PLALELSAWGTAEPGELMWLDAPPQAAYRQALELLKLLQALDEDGRITSRGTRMAKLGLH 420 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEP---PRMGNSDLGVAFS--------------- 459 PRL ML+ A+ + A ++A +L E P N D+ + Sbjct: 421 PRLGFMLLKAEELNLLPEACELAGLLSERDLLPHERNVDVALRLEALYGAGGRMEADRGA 480 Query: 460 --RNQPAWQQRSQQLLKRLNVRGGEAD---SSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 R + +Q Q + R G + +S L+A A+ DRIA+RR DGRY LAN Sbjct: 481 VQRIKAQAKQWRQMVTNNSIERKGNWNWQGTSYAGLLIALAYPDRIAQRRA-DGRYLLAN 539 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G GA L LSR +L A L A ++RI LA +D+D L Q + Q ++VE Sbjct: 540 GRGAALPELQPLSRSAFLAAAELDD--AGSESRIRLAAELDLDMLEQAAGEQFQVEESVE 597 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 WD ++A RR+++G + +K P+ +PS +++ A+ +GI GL +L+ A QL+ Sbjct: 598 WDSGAQAVRARRRVRLGSIILKETPIQQPSPEQIAIALADGIASAGLGLLSMPKAARQLQ 657 Query: 635 LRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 R+ A+ WP V + +LLA + WLLPH+ G+ + L+ L++ Q L GL+ WG Sbjct: 658 ARMQLMARH--NSGWPDVSEAALLATVHDWLLPHLYGMKNKSDLQRLNMVQILEGLMSWG 715 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 +Q LD ++P H TVP+GSRI I Y + + P +AVR+QE+FG P +A GR+PL L L Sbjct: 716 QRQELDEQVPTHMTVPSGSRIPIDYSDPDAPFIAVRLQELFGLQETPRLAGGRLPLTLHL 775 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 LSP+QRP+Q+TRDL FW AY EV+K++KGRYPKH WPDDP PT R K + Sbjct: 776 LSPSQRPVQVTRDLRSFWNEAYFEVKKDLKGRYPKHYWPDDPYAAQPTNRVKPRT 830 >UniRef50_A0KP00 ATP-dependent helicase HrpB n=39 Tax=cellular organisms RepID=A0KP00_AERHH Length = 1056 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 401/816 (49%), Positives = 527/816 (64%), Gaps = 14/816 (1%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 +SSLP+ +VLP L A+D V+L AP GAGKST LPL+L+ + G+II+LEPRRLA Sbjct: 242 LSSLPIVSVLPALFAAIDNHTSVILQAPPGAGKSTLLPLELVRQNRLPGRIIMLEPRRLA 301 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARN+A LA L EK G+ +G R+R ++ TRLE+VTEGVLTRM+Q+DPEL+GV LV Sbjct: 302 ARNIAGFLARQLGEKVGERIGLRVRGESRTSAATRLEIVTEGVLTRMLQQDPELTGVSLV 361 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL AD ALA ++ QQGLRDDLKLL+MSATLD L+ +LPEAPVV SEGR Sbjct: 362 IFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALEILLPEAPVVRSEGRG 421 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FP++ Y P Q + V E L +GSLL+FLPG GEI+R+ + L R+ +V Sbjct: 422 FPIDYHYRPANRQQWLEPQVGAVVLEALAAHAGSLLVFLPGQGEIERLAQWLEGRLPDEV 481 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L PLYG L + Q+ AI PAP G RK+VL TN+AETSLTIEGI +VVD ER A FD Sbjct: 482 TLAPLYGRLDMAAQQAAIEPAPAGRRKLVLTTNVAETSLTIEGISVVVDSGLERRASFDI 541 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 ++G+TRL T+ +++AS TQRAGRAGRL PG+ L + E ER A QS P+IL +L+GL Sbjct: 542 KSGVTRLETRPIAKASATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGL 601 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG---ERLSAQGQKMAALGND 417 L++ QWG ++ LD PP + +A+RLL LGA++ ++L+ G+ MAA G Sbjct: 602 LLDAAQWGAK-VEELPLLDMPPAAAVASAQRLLVSLGAMKPEGEQQLTPAGRAMAAFGTH 660 Query: 418 PRLAAMLVSAKND------DEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQ 471 PRLA ML+ A+ A AA + A+LEE R G+ L V F R Q A +Q + + Sbjct: 661 PRLARMLLRARELEAEGLTGIVADAAFLVALLEEDLR-GSERLSVLFHRRQGALRQSAAR 719 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEW 531 +RL R A + L A A+ DRI + R RYQL+ G+ L Sbjct: 720 WFERLGTRPASAQGQWLGLLCALAWPDRIGKLR-SGSRYQLSGGVSCDLVEGHPCQGQGA 778 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIG 591 LIA + G +RI +A +++DELV++ P+LV + +WD+ + ++A R+ +G Sbjct: 779 LIAIEM--GQNERGSRIFIAEPIELDELVRQLPELVSERQWFDWDEREERVRAERQQVLG 836 Query: 592 QLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 +L + +PL S+++ + +L GIR KGL VL W +E L RL CA WLP+ WPA Sbjct: 837 ELVLSQRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDDASEGLLARLRCARDWLPDEGWPA 896 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 +D+ SLLA LE WLLP ++G+ L LK LD+ LR L W + +RLD LP H+T PT Sbjct: 897 MDEASLLADLEQWLLPAVSGMTRLEQLKKLDMSDILRQSLPWPLPKRLDEALPGHFTAPT 956 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 GSR+ IRY P + VR+QEMFG+A P +A GRV LV+ELLSPAQRPLQIT DL+ F Sbjct: 957 GSRVRIRYQLGQAPVIPVRIQEMFGQAATPCVADGRVALVVELLSPAQRPLQITADLAAF 1016 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 W G+Y V+KEMKGRYP+H WPD+P PTR TKK Sbjct: 1017 WAGSYELVKKEMKGRYPRHYWPDNPLEAMPTRVTKK 1052 >UniRef50_Q11QG4 ATP-dependent helicase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11QG4_CYTH3 Length = 826 Score = 860 bits (2223), Expect = 0.0, Method: Composition-based stats. Identities = 336/830 (40%), Positives = 479/830 (57%), Gaps = 30/830 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRL 59 M+ P+A ++ E+ L+ V+L AP GAGKST LPL+LL + KIILLEPRR+ Sbjct: 1 MNQYPIAEIVEEIKETLNLQTTVILQAPPGAGKSTILPLELLKADWLEEKKIILLEPRRM 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+VAQR+A+LL E+ G TVGYR+R V TR+EVVTEG+LTR +Q+D L GVG+ Sbjct: 61 AARSVAQRMADLLGEEVGKTVGYRVRFDQRVSAQTRIEVVTEGILTRRLQQDNTLEGVGM 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL +DL+LAL D+QQ LR+DL++LIMSATLD + L +L +AP++ S+GR Sbjct: 121 VIFDEFHERSLHSDLSLALCRDLQQILREDLRILIMSATLDGENLSAILDKAPIITSKGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 +P++ RY + + + +++L++E+G +L+FLPGV EIQ+ L R G D Sbjct: 181 QYPIDVRYTSIDTNAPISGQITTVISKVLKEETGDILVFLPGVREIQQTAAALTERHG-D 239 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + + PLYG LSLN Q++AI P Q RKVVLAT+IAETSLTIEGI +V+D RV +FD Sbjct: 240 IAVRPLYGELSLNAQQEAIRPDAQQRRKVVLATSIAETSLTIEGIHIVIDSGLARVPKFD 299 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +G+T+L T +V+Q + QRAGRAGRL PGI++ L + + Q PEI ++DL+ Sbjct: 300 PNSGMTKLETVKVTQDAADQRAGRAGRLGPGIAIRLWPEATQQYLKPQRVPEIAEADLAP 359 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPR 419 L++EL QWG D M+W+ PP ++ A+ LLQ L A++ ++ G+ +A L PR Sbjct: 360 LVLELAQWGVRDIQSMTWITAPPSGSVDQARTLLQELDAIQNGVITEDGKALANLPTHPR 419 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMG---NSDLGVAFSRNQP------------- 463 A +L+ K A + ILEE +G +D+ + Q Sbjct: 420 TAHLLLKGKEHTILPLAIDLVCILEERDALGKHAGADISLRVDALQAWRAGKRFQGDTFI 479 Query: 464 --AWQQRSQQLLKRLNVRGG--EADSSLIAPLLAGAFADRIAR-RRGQDGRYQLANGMGA 518 ++ Q K +++ E D+ I L+A A+ +RIAR RY++AN Sbjct: 480 LERIERAVQSWRKIFSIKSSVYEFDTDSIGLLIAAAYPERIARLVDAASARYRMANSRNV 539 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 L ND L + EWL G + RI A ++ L + Q + WD+ Sbjct: 540 RLHENDVLVKEEWLAVAHADAGVG--EGRIYWAAALNPMLLT----DRMVQEARIRWDET 593 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 +G L +IG LTV +PL + E A+ +R +GL + NW Q + R+L Sbjct: 594 KGVLLQQEETRIGSLTVTSKPLKEVDETLRAAALCEAVRKEGLKIFNWDEACVQWQARIL 653 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 +W P WP VD E LL LE WL ++ V K + + + L +L W + Sbjct: 654 SLKQWRPTEAWPNVDAEGLLQTLEDWLPFYLKQVKRREDFKKIPLPEVLHTILPWEQAKI 713 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNP-PALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 L P H VP+GS IA+ Y D P L+VR+QE+FG PT+ +GR +++ LLSP Sbjct: 714 LAKLAPTHIDVPSGSSIALEYKTDGSFPVLSVRLQELFGLTDTPTVNEGRTKVMIHLLSP 773 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 +P+Q+T+DL FW Y EV+KE++ RYPKH WP+DP N R K+ Sbjct: 774 GYKPVQVTQDLKSFWANTYPEVRKELRMRYPKHSWPEDPWNAEAVRGVKR 823 >UniRef50_B7VJZ7 Helicase n=18 Tax=Vibrionales RepID=B7VJZ7_VIBSL Length = 832 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 389/819 (47%), Positives = 546/819 (66%), Gaps = 14/819 (1%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LP+ AV+P+LL + Q++L A GAGKST+ PLQL+ + GKII+LEPRRLA Sbjct: 12 LPQLPIEAVMPDLLAGVQTHTQLILKAAPGAGKSTFFPLQLVKTNAVQGKIIMLEPRRLA 71 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARN+A LA L EK G+++G+R+R ++ TRLE+VTEG++TRMIQ DPEL+GV +V Sbjct: 72 ARNIATYLARQLGEKVGESIGFRVRGESKTSSATRLEIVTEGIMTRMIQTDPELTGVDMV 131 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ AD ALA L++Q LRDDLK+++MSATLD LQ +LP+A V S+GR+ Sbjct: 132 IFDEFHERSIHADTALAFSLEIQDALRDDLKVVVMSATLDQHALQSLLPDAKYVESQGRT 191 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FPV+ RY PL +++ +A ++ +ESGSLL FLPGV I++V+ QL + SD+ Sbjct: 192 FPVDFRYQPLGSNEYLAPKMANVIRSLMEKESGSLLAFLPGVSAIKQVESQLGQ-LVSDI 250 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 +CPLYG LS Q+++I P+ +G RKVVLATNIAETSLTIEGIRLVVD ERVA+FD Sbjct: 251 DVCPLYGQLSFEQQQRSIAPSVKGRRKVVLATNIAETSLTIEGIRLVVDSGLERVAKFDL 310 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 +TG+T+L ++SQ+S QRAGRAGR+E G+ + L ++ Q + A EPEIL SDLS L Sbjct: 311 KTGITKLEQVKISQSSAEQRAGRAGRIEEGLCVRLYSETQLMQQPAVPEPEILHSDLSSL 370 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPR 419 + EL QWG + ++ WLD PP + K+LLQ L L+ + ++ G++ LG +PR Sbjct: 371 VSELTQWGAASAEELQWLDVPPKASTEQGKQLLQNLELLDANGQFTSMGKQAQRLGIEPR 430 Query: 420 LAAMLVSAKNDDEAAT-AAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ-------QRSQQ 471 +A+ML+ A+ + A A +AA L E P +D+ + R + QR++ Sbjct: 431 IASMLIKAQQNSPALLNVAIVAAALLEEPERNVTDIQHSLHRLKQRKHSKNSVVMQRAKS 490 Query: 472 LLKRLNVRG--GEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSR 528 L +LN + D SL+ +L AF DRIA+ R G ++LANG GA + +D L+ Sbjct: 491 LASKLNHHLDLSQVDESLLPLVLCFAFPDRIAQSRSATGCAFRLANGHGAEVRDDDRLAN 550 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 +E+++ L++ + ++I LA +DI +L L + D +WD+ +G L A R+ Sbjct: 551 NEYIVVIDLMRTAGRA-SQIFLATPIDIVQLEASFSGLFTREDYADWDEKRGRLVAEERV 609 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD 648 +G+L + + L +P D++ QA+LN I GL L+WT+ A+QL R+ CA W+PE+D Sbjct: 610 LLGKLIISTKALPEPDSDQISQALLNYIARCGLERLHWTSSAKQLVERVRCAQLWMPEHD 669 Query: 649 WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYT 708 WPA+DD SL+ L+ WL P++ G+ S +GL ++ I QAL L W + Q +D LP +Y Sbjct: 670 WPAMDDASLIEHLDEWLSPYLNGIKSAKGLSNVSIEQALSAYLGWPLNQEIDQWLPTNYL 729 Query: 709 VPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDL 768 +PTGS+ +IRY + P ++VRMQE+FGE +P IAQGR +VLELLSPAQRPLQIT+DL Sbjct: 730 MPTGSKKSIRYQYKSEPMISVRMQEVFGEQDSPLIAQGRKKVVLELLSPAQRPLQITQDL 789 Query: 769 SDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 + FW GAY+EVQKEMKGRYPKH WPDDPAN T +TK+ Sbjct: 790 AGFWAGAYKEVQKEMKGRYPKHPWPDDPANHVATTKTKR 828 >UniRef50_C8R296 ATP-dependent helicase HrpB n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R296_9DELT Length = 860 Score = 853 bits (2205), Expect = 0.0, Method: Composition-based stats. Identities = 363/859 (42%), Positives = 491/859 (57%), Gaps = 54/859 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 S+LPV V+P+L L V+L+AP G+GK+T +P LL P + G KI+LL+PRRLA Sbjct: 3 STLPVHHVIPQLRRELARQAAVILTAPPGSGKTTLVPPALLDEPWLAGQKILLLQPRRLA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A +A+ NE G ++GYR+R ++ V TRLEV+TEG LTR +Q DPEL+G+GLV Sbjct: 63 ARLAATFMAQSRNETVGQSIGYRVRFESRVSAATRLEVLTEGTLTRQLQSDPELAGIGLV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL+ADLALAL DVQQGLR DLK+L+MSATLD++ L +L +APV+ +EG S Sbjct: 123 IFDEFHERSLEADLALALCRDVQQGLRPDLKILLMSATLDSEPLSALLDQAPVIGAEGES 182 Query: 181 FPVERRY-----LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 FPV + P + A A R+ G +L FLPG GEI+ + L+ Sbjct: 183 FPVSIEHLATAAGSFPYPREIAAQTAAAIRRAWREHPGDILAFLPGAGEIRLCHQLLSDN 242 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + PLYG L L Q A+ P P G R+++LAT+IAETSLTIEGI VVD +R Sbjct: 243 PPAATTIYPLYGDLPLAAQAAAVQPDPGGRRRIILATSIAETSLTIEGIHTVVDSGWQRR 302 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 RFDP +GL+RL T+R+SQA+ TQR GRAGRL PG L L + + PEIL + Sbjct: 303 PRFDPNSGLSRLTTRRISQAAATQRTGRAGRLGPGHCLRLWHPGEEQGLLPFEPPEILNA 362 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 DL+ LL+EL WG +PA+++WLD PP A+ LL LGA++ + R++ G+ + L Sbjct: 363 DLAPLLLELACWGVGNPAELTWLDPPPPGPCAQARELLLALGAVDQQGRVTPLGRLINEL 422 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQ---- 470 PRL ML+ A A +AA+L E + D A ++ Q Sbjct: 423 PVHPRLGLMLLKAAEAGAGEIACDLAALLSERDLLKGQDKPADLDERLEALRRWRQASAR 482 Query: 471 ----------------------------------QLLKRLNVRGGEADSSLIAPLLAGAF 496 QL + + + + LLA A+ Sbjct: 483 QTAAPDERRRPRQTLASGQEIDHAACRRVDRTASQLQRIIRHQESRGPTLDSGELLALAY 542 Query: 497 ADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVD 555 DRIARRR G G+Y+L+ G GA L D L+ E+L L + + RI LA ++ Sbjct: 543 PDRIARRRPGMRGKYKLSGGRGATLPTGDRLADQEYLAVAELD--AGRREGRIFLAGALN 600 Query: 556 IDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNG 615 L + P+ +Q + + WD G +K + QLT++V PLA P + + + +L Sbjct: 601 PAALPRLFPEQLQNREELYWDREAGAVKGQSVVCFKQLTLEVAPLADPDPEAVRRVLLQA 660 Query: 616 IRD------KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHM 669 I++ GLS+L W A +L+ RL+C +W PE +WP VDD+ L LE WL P + Sbjct: 661 IKESGETGKNGLSLLPWNDRARELQARLICIGQWQPEGNWPRVDDQYLSQHLEQWLGPWL 720 Query: 670 TGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAV 729 G+ + L+ LD+ L LD+ Q+ LD E+P H VP+GSR + Y D PP LAV Sbjct: 721 DGIKTAEQLRKLDLAAILAAQLDYQQQRYLDREVPTHLVVPSGSRRKLAYQPDRPPVLAV 780 Query: 730 RMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPK 789 R+QEMFG P IAQGRVP++L LLSPA RP+QIT DL FW Y +V+KE++GRYPK Sbjct: 781 RLQEMFGLEDTPMIAQGRVPVLLHLLSPAGRPVQITTDLRGFWDSGYHQVKKELQGRYPK 840 Query: 790 HVWPDDPANTAPTRRTKKY 808 H WPDDP APT R K Sbjct: 841 HHWPDDPRQAAPTARAKPR 859 >UniRef50_Q3A1P8 ATP-dependent helicase HrpB n=8 Tax=Desulfuromonadales RepID=Q3A1P8_PELCD Length = 844 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 353/838 (42%), Positives = 480/838 (57%), Gaps = 40/838 (4%) Query: 5 PVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAARN 63 P+ ++L ++ AL +L A GAGK+T +PL LL P + G +I++LEPRRLAA N Sbjct: 9 PIDSILGDVALALRSNQAAVLQAEPGAGKTTRVPLALLDEPWLAGQRILMLEPRRLAATN 68 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+ +A L E+ G TVGY +R TRLEVVTEG+LTR +Q DP L GVGLVI D Sbjct: 69 AARYMAGCLGEQVGATVGYAIRFDRRTSAATRLEVVTEGILTRRLQADPTLEGVGLVIFD 128 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHER+L +DLALAL D Q GLR+DLKLL+MSATLD + + ++L +AP++ GR PV Sbjct: 129 EFHERNLNSDLALALCRDAQLGLREDLKLLVMSATLDGEPVARLLGDAPLLRCPGRCHPV 188 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL-ASRIGSDVLL 242 E YLP + VA A R+ G +L+FLPG GEI R ++ L + D + Sbjct: 189 EVTYLPREPQGPLAEVVARAVRRAARETEGDMLVFLPGAGEILRCRDLLLREPVVDDPQI 248 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 LYG L +Q +A+ P P RKVVLATNIAETSLTIEG+R+V+D R +RFD + Sbjct: 249 NVLYGDLPFAEQERALRPGP--RRKVVLATNIAETSLTIEGVRVVIDSGFMRQSRFDAGS 306 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL RL++ R++ A+ QRAGRAGRL PG L + + PEI +DL+ L + Sbjct: 307 GLPRLVSVRITAANADQRAGRAGRLGPGRCYRLWTEATHGGLLPFAAPEIRSADLTLLAL 366 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLA 421 EL +WG D + WLD PP L AA+ LL+ LGAL+ +RL+ GQ MA L PR+A Sbjct: 367 ELARWGVPDAMSLCWLDAPPAGALSAARALLRQLGALDARQRLTRLGQAMAELPAHPRIA 426 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMG---------NSDLGVAFSRNQPAWQQRSQ-- 470 A+LV+ + + A A +AA+LEE + +SDL Q AW+ ++ Sbjct: 427 ALLVAGRGNPLAPWACDLAALLEERDLLRGNRRASHATDSDLLERLDILQ-AWRTKASLP 485 Query: 471 --------------------QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRG-QDGR 509 + + D+ I LL A+ DR+AR+R R Sbjct: 486 EGVDASACRTVDRAARAWRRRSRLEQGAQTAMPDADSIGGLLLAAYPDRLARQREVGSKR 545 Query: 510 YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 Y LANG G L L E+L+A + G + DA I A V + + + + Sbjct: 546 YVLANGQGGCLSPRSGLRGTEYLVAVHV-SGGRTGDAFIHQASSVGLASIESFYAERLGW 604 Query: 570 SDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE 629 V WD AQ + A +G L + +P+ + S DE+HQA+L GIR GL L W E Sbjct: 605 QRRVFWDAAQQRIVAREERSLGALLLASRPV-EASGDEMHQALLEGIRQLGLDALPWEDE 663 Query: 630 AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 A QL+ R+ A+ E WP + D++L +L WL P + G+ LK LD+ + LR Sbjct: 664 ARQLQYRVAVMAEAYAEQSWPDLSDDALRESLAEWLSPFVAGMRRAADLKRLDLVEVLRS 723 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 LDW + LD+E+P H VP+G R+ + Y ++ PP LAV++QE+FG A P++A GRV Sbjct: 724 RLDWSHLRLLDTEVPTHLAVPSGHRVRLTYQQNGPPILAVKLQELFGLADTPSVAGGRVA 783 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 + L LLSPA+RPL +T+DL FW Y EV++EM GRYPKH WPDDP PTR TK+ Sbjct: 784 VQLHLLSPARRPLAVTQDLRHFWDHVYPEVRREMAGRYPKHPWPDDPWRAIPTRSTKR 841 >UniRef50_B0TA29 ATP-dependent helicase hrpb n=3 Tax=Bacteria RepID=B0TA29_HELMI Length = 874 Score = 847 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 368/876 (42%), Positives = 504/876 (57%), Gaps = 75/876 (8%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M+SLP+ A+LP L AL +L AP GAGK+T +PL LL P + G+ II+LEPRRL Sbjct: 1 MTSLPIEAILPALKEALRVRTSTVLVAPPGAGKTTRVPLALLNEPWLAGRRIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+ A+ +A L E G+TVG+R+R + VGP+T +EVVTEGVLTR +Q DP L VGL Sbjct: 61 AARSAARHMAVSLGEAVGETVGFRVRLETRVGPSTAIEVVTEGVLTRRLQADPALEDVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL LAL L Q LR+DL++L+MSATLD + + +L +AP++ SEGR Sbjct: 121 VIFDEFHERSLAADLGLALCLQSQALLREDLRILVMSATLDAEPVAALLGDAPIIASEGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI--G 237 F V+ RYL + VA E L + G +L+FLPG+ EI+RV+ +L Sbjct: 181 PFSVDTRYLERRTEGTMEAQVARTVREALLNDEGDILVFLPGMKEIRRVEARLVEMGVGT 240 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 V +CPL+G L L+ Q +AI P P G+RKVVLAT+IAETSLT+EGIR+VVD RV R Sbjct: 241 GKVRICPLHGGLPLDAQDRAIAPCPPGIRKVVLATSIAETSLTVEGIRVVVDSGLMRVPR 300 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 F PRTG++RL T VS+AS QR GRAGRL PG+ L + + R A +S PEIL++DL Sbjct: 301 FSPRTGMSRLETVPVSRASADQRRGRAGRLGPGVCYRLWTQPEDLRLAPRSAPEILEADL 360 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-------RLSAQGQK 410 + L +EL WG DP ++ WLD PP L A+ LL LGALE + ++ QG++ Sbjct: 361 APLALELAAWGIKDPGELQWLDPPPAAAFLHARELLIQLGALEADGQRGTGGLITPQGRR 420 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM------GNSDLGVAFSRNQPA 464 MA G PRLA M++ A A ++AAIL E ++DL + Sbjct: 421 MAEAGLHPRLAHMVLQAIPMGLGKVACRLAAILSERDFFRDGGVRRDADLRLRLEALDGN 480 Query: 465 WQQ----------------------RSQQLLKRLNVRGGEADS----------------- 485 ++ + L + +R D Sbjct: 481 FRDSEDVGAAFGVAVDLAARRRILAEASALQRAFGLRDEPCDEKSEAYVASQPEKVLPVF 540 Query: 486 ---------------SLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 LLA AF DRI +RR DGR+ L NG GA L Sbjct: 541 MEEDVCRSDRWESCVDACGLLLAFAFPDRIGQRR-PDGRFLLRNGRGAAFADVQPLCNSP 599 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 +L+A L P++RI+LA V+ ++L + +++ V W+ + ++A +R ++ Sbjct: 600 YLVAAELDD--QGPESRIILAAPVESEDLERYFGGQIEKERLVVWERSSQAVRARQRERL 657 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 G L ++ + LA + + +A+L G+R++GL++L+WT A Q + RL A+W + DW Sbjct: 658 GALVLRERSLADVEPEAIQKALLAGVREEGLAILSWTKAARQFQERLQFMARW--DDDWL 715 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 DE+LLA LE WL PH+ G+ S L+ LD+ + L L W ++ LD P H VP Sbjct: 716 DASDEALLAKLEDWLGPHLYGMKSRNDLQRLDVREILEATLTWDRRRELDECAPTHILVP 775 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 +G R+ I Y P LAVR+QEMFG P I +GRVPL L LLSPAQRP+Q+T+DL+ Sbjct: 776 SGRRVPIDYGTPEAPVLAVRLQEMFGLKDTPRICRGRVPLTLHLLSPAQRPVQVTQDLAS 835 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 FW+ AY EV+K++KGRYPKH WP+DP PT R + Sbjct: 836 FWRDAYFEVRKDLKGRYPKHYWPEDPREAIPTSRVR 871 >UniRef50_C0Z909 Putative ATP-dependent helicase n=2 Tax=Bacillales RepID=C0Z909_BREBN Length = 834 Score = 847 bits (2190), Expect = 0.0, Method: Composition-based stats. Identities = 360/839 (42%), Positives = 506/839 (60%), Gaps = 37/839 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M++LP+ VLPEL+ L +L A GAGK+T +PL L ++ + I++L PRRL Sbjct: 1 MNALPINEVLPELVNTLREETNAVLVAAPGAGKTTRVPLALREEAWLHNRRIVMLVPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A +A LL E+ G TVGYR++ ++ VGP TR+EV+TEG+LTRM+Q DPELS VGL Sbjct: 61 AARQAAAYMAALLGEEVGQTVGYRVKRESRVGPGTRIEVMTEGILTRMLQDDPELSDVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHER+L ADL LAL L Q R+DL++L+MSATLD + + +L AP+V S+GR Sbjct: 121 VIFDEFHERNLHADLGLALSLQAQSLFREDLRILVMSATLDAEPVSALLGNAPIVSSKGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR-IGS 238 FPVE R+L P R ++A+ + LRQE G +L+FLPG EI RVQE L +G+ Sbjct: 181 MFPVETRFLTSPMQGRLEEAIVQMIFQALRQEEGDMLVFLPGAKEIHRVQELLEQSGVGT 240 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 ++ + PLYG LS +Q KAI P G RK+VLAT IAETSLT+EG+R+V+D +R+ RF Sbjct: 241 NIRIAPLYGNLSQEEQDKAIQPGKTGERKIVLATTIAETSLTVEGVRIVIDSGLKRIPRF 300 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 PRTG+TRL T +VS+AS QR GRAGRL PG+ L +++ Q PEI+++DL+ Sbjct: 301 SPRTGMTRLETAKVSRASADQRRGRAGRLAPGVCFRLWTEQEDRMLIPQQAPEIMEADLA 360 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGND 417 L +EL WG ++ WL+ PP + A+ LL LGAL+ ++++A G+ +A + Sbjct: 361 VLALELALWGVGSSDELDWLNPPPKPAMAQAQELLLQLGALDERKQITAHGRALAGMAVH 420 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--------------------------GN 451 PRL M+ A E A ++A +LEE + G Sbjct: 421 PRLGHMIQKANELGEGELACELAVLLEERDIVRGRQASVDADMRTRVELLRRVGNKQSGG 480 Query: 452 SDLGVAFSRNQPAWQQRSQ--QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGR 509 ++L + Q W++ + ++ G + LLA A+ DRIA+RR DGR Sbjct: 481 TELPIDVGACQRLWKEAAHFKRVWGNNQSAGTSTRTEATGRLLAFAYPDRIAQRRA-DGR 539 Query: 510 YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 Y L NG GA L +++A L A D+RILLA V+ EL++ C + + Sbjct: 540 YLLRNGRGAAFSVQQPLVASPYIVAAELDDQGA--DSRILLAASVEESELLKDCAMQITE 597 Query: 570 SDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE 629 V W+ + G +++ ++ ++G + + P A+ S DE+ A L+GI+ +GL +L W + Sbjct: 598 RMNVWWEHSAGAVRSRKQKRLGAILLADMP-AESSPDEVLTAFLDGIKGEGLEILPWNRQ 656 Query: 630 AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 A Q R RLL + E DWP V+DESLLA+LE WL PH+ G L+SL + L Sbjct: 657 ARQYRERLLFMHRL--EEDWPNVEDESLLASLEEWLAPHVYGFKRKEDLQSLSVTTLLES 714 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 +L W +++LD P H VP+GS+I + Y P L++R+QE+FG +P I +GRVP Sbjct: 715 MLSWEQRRQLDEHAPTHVIVPSGSKIPVDYSNPAAPVLSIRLQELFGWQDSPRIGRGRVP 774 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L L LLSPA RP+Q+TRDL+ FW AY EV+K++KGRYPKH WPDDP PT RT+ Sbjct: 775 LTLHLLSPAHRPVQVTRDLASFWAHAYFEVKKDLKGRYPKHYWPDDPLAAIPTNRTRPR 833 >UniRef50_Q0EYD3 ATP-dependent helicase HrpB n=2 Tax=Proteobacteria RepID=Q0EYD3_9PROT Length = 861 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 331/858 (38%), Positives = 484/858 (56%), Gaps = 53/858 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M LP+ VLPE+ L +++L AP GAGK+T +P+ LL + + II+LEPRRL Sbjct: 1 MPLLPIHDVLPEIKEKLTTHNRLVLQAPPGAGKTTAVPIALLGEGWLGDRQIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AARN A R+A LL EK G+TVGY++R +CV T++ VVTEG+LTR +Q DPEL+ L Sbjct: 61 AARNAAARMAFLLGEKVGETVGYQIRQDSCVSDKTKILVVTEGILTRKLQADPELTNTAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL+LAL L QQ LR+DLK+L+MSATL D + +L AP++ SEGR Sbjct: 121 VIFDEFHERSLHADLSLALCLQSQQILREDLKILVMSATLHTDAVASLLHHAPIIESEGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEM-------LRQESGSLLLFLPGVGEIQRVQEQL 232 SFPVE RYL QR + ++ + + G+ L+FLPGV EI ++ Q+ Sbjct: 181 SFPVENRYLDHAIRQRNSNPQQQLMIDLTNTVNTFIHEHEGNCLVFLPGVKEINQLARQI 240 Query: 233 ASRIGS----DVLLCPLYGALSLNDQRKAIL-PAPQGMRKVVLATNIAETSLTIEGIRLV 287 + +++ PL+G+L Q AI PA +GMRK+VLATNIAETS+TIEGI V Sbjct: 241 KQLLDRESIRHIVIAPLHGSLKKQQQDLAIAAPADKGMRKIVLATNIAETSITIEGISCV 300 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ 347 +D ERV + P +G+ RL T+ +SQ S QR+GRAGRL G + + Q R Sbjct: 301 IDSGLERVLDYSPASGMNRLTTRAISQDSAVQRSGRAGRLSAGTCYRMWSATQQSRLLKH 360 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSA 406 + PEIL SDL+ L++EL WG +D ++ W+D PP + AK LLQ LGA++G ++A Sbjct: 361 ASPEILHSDLTSLVLELANWGVTDVNELQWMDLPPHGAIEQAKTLLQQLGAIDGLGTITA 420 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFS------ 459 G+ M LG PRLA M+++A ++A A IA++L E + N+D Sbjct: 421 HGRDMLRLGTHPRLAHMMLAAVKLNQAYHACLIASLLSEKDIFLANADKSADIHDRLNVL 480 Query: 460 -RNQPAWQQRSQQLLKRL-----------------NVRGGEADSSLIAPLLAGAFADRIA 501 + Q KR+ + D LLA A+ DRIA Sbjct: 481 LHGKSNHHGIDHQQCKRIMQSADDFFRRVKQCSKAGLNKERPDHHYSGVLLAYAYPDRIA 540 Query: 502 RRRGQD-GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELV 560 +RR + RY L+NG GA++ HE+L+ L + +A I LA + ++L Sbjct: 541 KRRNPNEARYLLSNGKGAVIPPYIQHHLHEYLVVANLD--ARQGEASIYLAADISAEQLQ 598 Query: 561 QRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSE-DELHQAMLNGIRDK 619 +++Q + VEW+D ++ + +IG++ ++ + + + Q +L IR++ Sbjct: 599 TCFSGIIEQEERVEWNDEAQRVEVKQVSRIGKIMLQESTVHHSDSREAVQQCLLQAIREQ 658 Query: 620 GLSVLNWTAEAEQLRLRLLCAAKWLP----------EYDWPAVDDESLLAALETWLLPHM 669 G+ LNW+++A L+ R+ L E P +++L LE WL PH+ Sbjct: 659 GVGCLNWSSKARSLQQRVQFIHHHLDKSAAVKNMFAEQPLPDFSEQALSDRLEDWLQPHL 718 Query: 670 TGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAV 729 +SL+ +LD++ L L W QQ + P +VP+GS + I Y + P LAV Sbjct: 719 NHENSLKQCFNLDLHSLLLNQLSWQQQQLIKQLAPERISVPSGSAVTIDYSDPEQPVLAV 778 Query: 730 RMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPK 789 R+QE+FG PT+ G L + LLSPA++P+Q+T+DL+ FW+ Y +V+KE++G+Y + Sbjct: 779 RLQEVFGLFDTPTLLNGACKLTMHLLSPARKPMQVTQDLNSFWQTTYHDVKKELRGKYKR 838 Query: 790 HVWPDDPANTAPTRRTKK 807 H WPDDP T +TKK Sbjct: 839 HYWPDDPFTAEATSKTKK 856 >UniRef50_A6Q8R2 ATP-dependent helicase HrpB n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q8R2_SULNB Length = 827 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 323/834 (38%), Positives = 488/834 (58%), Gaps = 34/834 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M +LP+ VLP++ L +++L AP GAGK+T LPL LL P + GK II+LEPRRL Sbjct: 1 MQTLPITHVLPKVKEKLIHHNRLVLQAPPGAGKTTALPLALLDEPWLEGKKIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A R+ A R+AELL EK G +GY+++ ++ T++ +VTEG+LTR +Q DP L V L Sbjct: 61 AVRSSAARMAELLGEKVGQRIGYQIKMESVQSRATKILIVTEGILTRKLQNDPALESVAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHERSL ADL+LAL L+ Q LR+D+K+L+MSATL+ + +L APV+ S+GR Sbjct: 121 IIFDEFHERSLHADLSLALALESQSVLREDMKILVMSATLNTAAISTLLDNAPVIESQGR 180 Query: 180 SFPVERRY----LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +FPVER + P P + + ++L +E G++L+FLPGV +I+ V++ L Sbjct: 181 AFPVERIHLDAGTPQPTLKTLPSYIHKLLLKLLAEEEGNILVFLPGVRQIKAVEKLLNES 240 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + LYG LS Q +AI P+G KVVL+TNIA+TSLTIEGI++V+D + V Sbjct: 241 RIKNTYISTLYGNLSKEAQDRAIKAPPKGTGKVVLSTNIAQTSLTIEGIKIVIDSGLQNV 300 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 + F+P +G+ +L ++ +S+ + QRAGRAGRL G + HL K + PEIL + Sbjct: 301 SVFNPFSGMNKLESKFISKDAAIQRAGRAGRLSAGKAYHLWHKSRI--LQKHDTPEILSA 358 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAAL 414 DLS L++EL QWG D +SW+D PP+ + A+ LL+ LGAL+ +++ G+ M + Sbjct: 359 DLSQLVLELAQWGNDDINALSWMDTPPITAIHHARALLKQLGALDSNGHITSHGEAMGSY 418 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS----DLGVAFSRNQPAWQ---- 466 G PRLA M++ AK D + A+ +A ++ E ++ DL Q Sbjct: 419 GLHPRLAHMMLKAKEMDLSYEASLLAVLVSEKDIYSSAYTSADLRERVITLHDVAQKANV 478 Query: 467 ----------QRSQQLLKRLNVRGGEA-DSSLIAPLLAGAFADRIAR-RRGQDGRYQLAN 514 + + +R+ + + LLA A+ DRIA+ R G Y L+N Sbjct: 479 SSKYVDIKQCRYLLENARRIEKNQTSTLHTEQLGILLAFAYPDRIAQLRHRNKGTYLLSN 538 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G GA L ++D L +L L + S DA I A+ + + ++ + + V Sbjct: 539 GKGAYLHSDDTLFNSPYLAISDLD--AKSTDAAIYKAIALSLADIETHLG--TETQEMVT 594 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 W++A+ +K + G+L +K L + E+ + +L+ I GL++L+W EA+ LR Sbjct: 595 WNEAEARVKVRKVECFGKLILKETQLKSTASPEVLEVLLDEIEALGLNILHWNKEAKNLR 654 Query: 635 LRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 R+ L + ++P DE+LL ++ WL P++ V +L+ ++LD++ L GLL + Sbjct: 655 ERVNFLH--LHDENFPDFSDENLLDTMDKWLAPYLQNVTTLKACRNLDLHNILLGLLSYE 712 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 Q+L+ +PA + V +GS+I I Y + P LAVR+QE+FG P I G+V L+L L Sbjct: 713 ELQKLNRLVPAKHKVASGSQIGIDYSDPQQPVLAVRLQELFGTHDTPAILGGKVKLMLHL 772 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LSPA RP+Q+TRDL FW+ Y EV+KE++GRY KH WPDDP T +TKK Sbjct: 773 LSPASRPMQVTRDLKSFWENTYDEVKKELRGRYKKHYWPDDPLEAKATSKTKKN 826 >UniRef50_Q21KE4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=Q21KE4_SACD2 Length = 864 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 370/851 (43%), Positives = 488/851 (57%), Gaps = 51/851 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAA 61 SLP+ LP + L + +++L AP GAGK+T +PL LL P NGK II+LEPRRLAA Sbjct: 12 SLPINDALPAIEATLLASNELVLEAPPGAGKTTVVPLALLNAPWRNGKKIIVLEPRRLAA 71 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 RN A R+A LL E+ +TVGYR+R NCVG NT +EVVTEGV TRM+Q DP L V +VI Sbjct: 72 RNAASRMASLLGERCAETVGYRVRMDNCVGANTVIEVVTEGVFTRMLQADPTLDDVAIVI 131 Query: 122 LDEFHERSLQADLALALLLD---VQQGLRDDL-KLLIMSATLDNDRLQQMLPEAPVVISE 177 DEFHERSL ADL LALL + +R+ K L+MSATL+ +L L APVV SE Sbjct: 132 FDEFHERSLDADLGLALLQQSNVLYGDMREQPIKTLVMSATLNGSQLSDYLGGAPVVTSE 191 Query: 178 GRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL---- 232 GR FPV+ Y P Q A A + + + GS+L+FLPG EI+ L Sbjct: 192 GRMFPVDVAYSDPYTPQQDSAARAAQAVNKAIAEYKGSILVFLPGRKEIEACARALRNWV 251 Query: 233 -ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 A + + +CPLYG LSL DQ++AI PA G KVVLATNIAE+SLTIEG+ +VVD Sbjct: 252 EAGELPKALAICPLYGDLSLADQQQAIAPAGAGTTKVVLATNIAESSLTIEGVSIVVDSG 311 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 +R AR+DP TG+TRL R+S+AS QRAGRAGRLEPG+ + L +K Q A + PE Sbjct: 312 LQREARYDPNTGMTRLNLCRISKASAEQRAGRAGRLEPGVCIRLWSKSQQSELAQYASPE 371 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER----LSAQ 407 I +D+ L ++LLQWG +D AQ+ WLD P A LL+ L AL+ L+A Sbjct: 372 IQHADMVPLALQLLQWGEADCAQIPWLDAPAPARYTQAIELLEQLEALKDNGGGISLTAL 431 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN-----Q 462 G+ MA L PRLA MLV AK A +AA+L E +G +++G FSR Q Sbjct: 432 GEAMAGLPVHPRLAHMLVVAKQLALQDLACTLAALLSERD-IGTANMGADFSRRVHWLLQ 490 Query: 463 PAWQQRSQQ-LLKRLNVRGG-------------------------EADSSLIAPLLAGAF 496 P + Q LKRLN + IA LLA AF Sbjct: 491 PQGAPKQLQGALKRLNALKKMLAQQLNRVTSPSLERALAVSEVIVLSQQEQIALLLACAF 550 Query: 497 ADRIAR-RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVD 555 DRIAR R+ +Y LANG A L +D+L EWL+ + I LA + Sbjct: 551 PDRIARARKNNPTQYLLANGRQANLFNDDSLVGEEWLVVAEASSQQGRSNDIIRLAAPIS 610 Query: 556 IDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNG 615 + L Q + + + EWD+ + + +R+ +G + + + L + A+ Sbjct: 611 LALLQQAFSAKLVEKNVCEWDENANRIVSEQRVALGAIILSAKQLTQADPALRVAAVRAL 670 Query: 616 IRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSL 675 I KGL VL WTA+A LR RL + +WP+ DE LL A++ WL P++ V++ Sbjct: 671 INKKGLGVLEWTADAINLRARLQLLHSV--DTNWPSWSDELLLGAIDDWLSPYLHSVNTG 728 Query: 676 RGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMF 735 L+ + I +AL L W Q LD P + VP+G + I Y ++ PP +A ++QE+F Sbjct: 729 ADLRKVKIAEALTATLSWEQQVELDKLAPVSFCVPSGRDVPIDYSQN-PPVIAAKLQELF 787 Query: 736 GEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDD 795 G A P+I G+VPL++ LLSPA +PLQ+T+DL FW+GAY EV+KEMKGRYPKH WPDD Sbjct: 788 GSAIAPSIVNGKVPLLIHLLSPAGKPLQVTQDLMSFWRGAYTEVKKEMKGRYPKHPWPDD 847 Query: 796 PANTAPTRRTK 806 P PTR+TK Sbjct: 848 PIMAMPTRKTK 858 >UniRef50_Q4K5J8 ATP-dependent helicase HrpB n=14 Tax=Gammaproteobacteria RepID=Q4K5J8_PSEF5 Length = 839 Score = 839 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 384/840 (45%), Positives = 515/840 (61%), Gaps = 34/840 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M+SLP+ VLP L TAL + +L AP GAGK+T +PL LL + G+ I++LEPRRL Sbjct: 1 MNSLPIDEVLPALRTALATRHEAVLEAPPGAGKTTRVPLALLDQDWLAGQTILMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+RLA L EK G+TVGYR+R + VGP TR+EVVTEG+LTR +Q DP L GVGL Sbjct: 61 AARAAAERLASELGEKVGETVGYRIRLDSKVGPRTRIEVVTEGILTRRLQDDPALEGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISE 177 +I DEFHERSL ADLALAL L ++ RD+ LK+L+MSATL+ +RL +L +AP++ SE Sbjct: 121 LIFDEFHERSLDADLALALSLSGRELFRDEQPLKILLMSATLEGERLSTLLGDAPILRSE 180 Query: 178 GRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 GR +PV +R+ P + + V E L ESGSLL+FLPG EI+RV +QLA + Sbjct: 181 GRMYPVTQRWGRPFQPGEFIEPRVVQTVLEALNDESGSLLVFLPGQAEIRRVHQQLAEAL 240 Query: 237 G--SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 G S++LLCPL+G L L QR AI PAP G RKVVLATNIAETSLTI G+R+VVD R Sbjct: 241 GERSEILLCPLHGELDLAAQRAAIDPAPSGKRKVVLATNIAETSLTINGVRVVVDAGLAR 300 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 V RFDP +G+TRL TQR+S+AS TQRAGRAGRLEPG+ L + +Q E+ AA + EILQ Sbjct: 301 VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSADQQEQLAAYASAEILQ 360 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAA 413 +DL+GL ++L +WG + P Q+ WLD PP A+ LL LGAL + L+ GQ MA Sbjct: 361 ADLAGLALQLARWGVT-PNQLVWLDAPPSAAYAQAQDLLVRLGALNDDGSLTRHGQAMAE 419 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAF---------SRNQ 462 L PR+A +L+ ++ A A +AA+L E R +DL +R Sbjct: 420 LPAHPRIAHLLLRGQSLGLAPMACNVAALLGERDILRGAGADLHSRLVLLGGEERAARGA 479 Query: 463 PAWQQRSQQLLKRLNVR---------GGEADSSLIAPLLAGAFADRIA-RRRGQDGRYQL 512 QR++QL ++ + LLA A+ DR+A +RR Y+L Sbjct: 480 QGGVQRARQLARQYRGYLRGQPEAAVADPEHPRWLGALLALAYPDRVAQQRRPGGAEYRL 539 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 ANG A+ D+L + WL+ L + RI LA D + V+Q D Sbjct: 540 ANGRAALFSETDSLMKQPWLVIADLGSRQGQREERIYLAADFDPVLFDSVLAEQVRQVDQ 599 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 ++WD+ +G L+A R+ ++G+L + +PL+ E QA++N +R KGL +L WT E Q Sbjct: 600 LDWDEREGVLRAERQRKVGELVLSREPLSGLDESARTQALVNLVRRKGLELLPWTPELRQ 659 Query: 633 LRLRLLCAAKWLPE----YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688 + R+ + E WP V D +LL LE WL P++ V L +L++ + Sbjct: 660 WQARVALLRQLDLEATGTSQWPDVSDGALLKGLEQWLQPYLGKVSRLSHFANLELAGIIH 719 Query: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748 LL W + QRLD P H TVP+GS I + Y ++PP LAVR+QE+FG A P IA GR Sbjct: 720 NLLPWPLPQRLDELAPHHLTVPSGSSIRLDYS-EHPPILAVRLQELFGLAQTPRIAGGRQ 778 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 + L LLSPA+RP+Q+T+DL++FW+ Y EV+K++KGRYPKH WPDDP T R K Sbjct: 779 VVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLIAEATARVKPR 838 >UniRef50_A1TWR1 ATP-dependent helicase HrpB n=3 Tax=Gammaproteobacteria RepID=A1TWR1_MARAV Length = 824 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 370/828 (44%), Positives = 499/828 (60%), Gaps = 31/828 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+ +LPEL L LL AP GAGK+T +PL LL P +G KI++LEPRRLAAR Sbjct: 2 LPIDGILPELTRTLAKTTTALLQAPPGAGKTTRVPLALLDAPWRDGRKILMLEPRRLAAR 61 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 + A+ +A L E PG TVGYR R V TR+EVVTEG+LTR+IQ DP L V+ Sbjct: 62 SAARYMARQLGEAPGQTVGYRTRLDTRVSGTTRIEVVTEGILTRLIQNDPMLEDYAAVLF 121 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERSLQADL LAL+ + QQ LR+DL+LL+MSATLD + +ML + PV+ SEGR+FP Sbjct: 122 DEFHERSLQADLGLALVRESQQALREDLRLLVMSATLDTAPIAKMLGDVPVISSEGRAFP 181 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V+ Y PL R D V E+L ++GS+L+FLPG GEI+RV +QLA ++ +V+L Sbjct: 182 VDVLYRPLSRSARMVDHVTAVVLEVLGDQAGSVLVFLPGAGEIRRVAQQLAGQLPENVVL 241 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYG L +Q +AI PAP G RKVVLAT IAETSLTIEG+R+VVD Q+R A FDP + Sbjct: 242 APLYGNLKSEEQDRAIAPAPDGSRKVVLATAIAETSLTIEGVRVVVDAGQQRRAVFDPNS 301 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 G+TRLIT RVS+AS QR GRAGR+EPG+ L ++ + A + EI ++DL+ L++ Sbjct: 302 GMTRLITGRVSKASAEQRKGRAGRVEPGVCYRLWSESEQFGLAEFTPAEIQEADLAPLVL 361 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAK------RLLQMLGALEGERLSAQGQKMAALGN 416 EL QWG P Q++W+D PP + A LL GA ++ G+ LG Sbjct: 362 ELAQWGARSPDQVAWIDAPPQAHWQQAVDLLQWLDLLDADGA-----ITDHGKAARDLGM 416 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN---SDLGVAFSRNQPAWQQRSQQLL 473 PRLA M++ + AA++AA+LEE +G +DL + R Sbjct: 417 HPRLAHMVLRGRALGFGQLAAELAALLEERDLLGPGSGADLHERIRVVRGQRPPRGLDTA 476 Query: 474 KRLNVRG------------GEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAML 520 + VR E ++ + +LA A+ DRIARRR G+ RYQL+NG GA L Sbjct: 477 RLQAVRQAAKRLCREPGSRSEPVATEVGRVLAQAYPDRIARRRSGEAPRYQLSNGKGASL 536 Query: 521 DANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQG 580 +D L+R WL+A L + +A I LA VD+ +L Q +Q+ + WDD +G Sbjct: 537 REHDPLARENWLVAADLD--GKAREATIYLAAPVDLGDLEQDLAAHIQEREEALWDDKRG 594 Query: 581 TLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 T+ A ++G L + +PL + + + + Q +L+ +R KGL L W A Q + R+ Sbjct: 595 TVVARHVRKLGALILAEKPLQQVAPELIQQGLLDAVRRKGLDRLPWNEAARQWQARVQLL 654 Query: 641 AKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLD 700 A P + WP V D +LLA +E+WL P M G+ L LD+ AL LLD+ QQ LD Sbjct: 655 ATQFPGH-WPDVTDSALLAGVESWLAPFMAGMQRWSDLARLDLTSALNSLLDYPQQQELD 713 Query: 701 SELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQR 760 P +PTG ++ + Y DN P LA ++Q +FG PT+A GRVP+V LLSPAQR Sbjct: 714 ELAPKALAIPTGQKVTLDYTADNGPVLAAKLQALFGWTETPTVAGGRVPVVTHLLSPAQR 773 Query: 761 PLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 PL +T DL+ FW+ AY +V+KE++GRYPKH WP+DP + TKK Sbjct: 774 PLAVTADLASFWQNAYPQVRKELRGRYPKHPWPEDPLTAQAQQGTKKR 821 >UniRef50_D1P961 ATP-dependent helicase HrpB n=1 Tax=Prevotella copri DSM 18205 RepID=D1P961_9BACT Length = 859 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 315/855 (36%), Positives = 469/855 (54%), Gaps = 58/855 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-------------AHPGINGK 50 LP + + AL + ++++AP GAGKST LPL +L H GK Sbjct: 13 LPAYQIADSVNEALMESANLVITAPPGAGKSTLLPLTILRGMSDQALEGFIHDHLKSQGK 72 Query: 51 IILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQR 110 I++LEPRRLAAR +A+R+A++L E G T+GYR+R ++ V +TR+EV+TEG+LTRM+ Sbjct: 73 ILMLEPRRLAARQIAERMAQILGEPVGKTIGYRVRFESKVSDDTRIEVLTEGILTRMLVN 132 Query: 111 DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE 170 D L GV +I DEFHERS+ +DLALAL Q+ +R DLKL+IMSAT+D + Q L + Sbjct: 133 DATLEGVSCLIFDEFHERSINSDLALALARQTQEIIRPDLKLIIMSATIDASIICQAL-Q 191 Query: 171 APVVISEGRSFPVERRYLPLPAHQR-FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 AP++ S+G+ FP+E Y + +A + R + G +L FLPG GEI + + Sbjct: 192 APLIESKGKMFPIETVYADHDIDRYQVAQEMAATICQAFRNQEGDILAFLPGQGEIMKCE 251 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 E L S + S L PLYG LS QR AI P+ G RK+VLAT IAETSLTIEG+R+VVD Sbjct: 252 ELLRSVLPSATL-YPLYGNLSPEKQRLAIAPSKPGERKIVLATPIAETSLTIEGVRIVVD 310 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R +D RTGL+ L T R+SQ TQR GRAGR+ G+ L + Q Sbjct: 311 SGLCRKLVYDARTGLSHLETVRISQDMATQRRGRAGRITSGVCYRLWTQTSEHLMPEQRL 370 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER------ 403 PEIL +DLS +++++ +G + P + WL PP NL+ A++LL L AL + Sbjct: 371 PEILDADLSSMVLDIAAFGENKPELLPWLTLPPKGNLVLAQQLLMSLNALTPDHDVHALS 430 Query: 404 --LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG---NSDLGVAF 458 ++ +G +MA L PR+A M++S+ + A A IAA+LEE MG +SD+ + Sbjct: 431 GSITEEGSRMAQLPCHPRIAKMMISSDSPAIQALACDIAALLEEKDPMGENEDSDMTLRL 490 Query: 459 S-------------RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRG 505 S N+ A + + + R+ D+ + L+A A+ +RIA Sbjct: 491 SILRSARCKKNLGRWNRIAQIAQEYRKMLRIREDNEPIDAEEVGHLIALAYPERIAHATD 550 Query: 506 QDGRYQLANGMGAMLDANDALSRHEWLIAPLL-------LQGSASPDARILLALLVDIDE 558 G ++++NG +D D+++ +EWL L R+ L+ V+ Sbjct: 551 HAGNFKMSNGNTIFIDPCDSMAANEWLAIASLNLDSTSSSSSGQGRKGRVFLSAPVNWKN 610 Query: 559 LVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRD 618 L Q + + WD +K + +IG L + +P+ + + + + R Sbjct: 611 LPA------QTCENISWDSKALAVKMQQETRIGALIIDSKPIQNANRETVSNIICEAARK 664 Query: 619 KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTG----VHS 674 GLS+ +W +L+ R+ A+W PE + P + E LL + WL ++ S Sbjct: 665 DGLSMFDWNESVHRLQQRVAQVAEWHPELEIPDLSTEHLLTTAQAWLPFYLEEGGKMKTS 724 Query: 675 LRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH-EDNPPALAVRMQE 733 + LK L++ + L +L + +QQ +D P H VP+GS I I Y P L+VR+QE Sbjct: 725 VTELKKLNLCEILWNILPYELQQEIDRLAPTHIRVPSGSNIRIDYRLGAEAPVLSVRLQE 784 Query: 734 MFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWP 793 FG + PT+ GR PL+LELLSP +P+Q+T+DL+ FW+G Y EV+KE+K RYPKH WP Sbjct: 785 CFGMTSTPTVDAGRQPLLLELLSPGFKPVQLTQDLASFWQGTYFEVRKELKRRYPKHFWP 844 Query: 794 DDPANTAPTRRTKKY 808 ++P + R K++ Sbjct: 845 ENPLESQAVRGVKRW 859 >UniRef50_Q20WW0 ATP-dependent helicase HrpB n=23 Tax=Alphaproteobacteria RepID=Q20WW0_RHOPB Length = 877 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 366/864 (42%), Positives = 513/864 (59%), Gaps = 60/864 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 + LP+ AVL L +AL +L AP GAGK+T +PL LL P + KII+LEPRR+A Sbjct: 15 TPLPIDAVLDRLGSALAANNVAVLVAPPGAGKTTRVPLALLDAPWLGAKKIIMLEPRRIA 74 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A+ L E+ GDTVGYR+R + V TR+EVVTEG+ +RMI DPEL+G+ + Sbjct: 75 ARASAERMAKTLGERVGDTVGYRVRFGSKVSRATRIEVVTEGIFSRMILDDPELNGIAAI 134 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSL ADL LAL D Q GLR+DL++L+MSAT+D R+ ++L +APV+ S GR+ Sbjct: 135 LFDEFHERSLDADLGLALARDAQVGLREDLRILVMSATIDGARVGKLLGDAPVIESLGRA 194 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR-IGSD 239 +PVE RYL + +A A A LR+ GS+L FLPG EI+R + L R + + Sbjct: 195 YPVETRYLGRKPDAPLERQMAEAIASALRENPGSVLAFLPGAAEIRRTETMLRERVVDAS 254 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + + PL+GAL + Q +AI PAP+G RKVVLAT+IAETSLTIEG+R+VVDC RV R++ Sbjct: 255 IEIVPLFGALDASVQDRAIQPAPKGCRKVVLATSIAETSLTIEGVRIVVDCGMARVPRYE 314 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P GLTRL T R S+A++ QR GRAGR EPG+ L + Q A ++PEIL +DLS Sbjct: 315 PDIGLTRLETVRASRAAVDQRRGRAGRTEPGVCYRLWDEPQTASLPAYTQPEILSADLSS 374 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 LL++L QWG DPAQ+++LD PP L A+ LL LGAL+ E R++ +G+ + AL P Sbjct: 375 LLLDLAQWGVGDPAQLAFLDAPPAPALKEARALLAELGALDTEGRITDEGKSLRALALPP 434 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS-DLGVAFSRNQPAWQQR---SQQLLK 474 RLA M+V A+ AA IAAIL E G+S DL + + QR ++QL + Sbjct: 435 RLARMIVDAQRQGCGEDAAAIAAILTERGLGGDSVDLDARLEQFRRDRSQRAISARQLAQ 494 Query: 475 RLNV-----------RGGEADSSLI----------------------------------- 488 R RGG + S+ Sbjct: 495 RWAAPSAPSPLAGEGRGGGSTSTASVRGTPTPNPSPQGGGESRRARGEAAPSQQGAGELT 554 Query: 489 -APLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDAR 547 +LA AF DR+A+ RG G + LANG GA +D AL+R ++ L +A + R Sbjct: 555 TGGMLALAFPDRVAKNRGN-GSFVLANGRGAAIDKTAALARAPYIAVAELTGTAA--NGR 611 Query: 548 ILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDE 607 ILLA + ++E+ R + D + +D L+ R+ + +T+ P+A + Sbjct: 612 ILLAAPITLEEIEARFAAEIDAVDDISFDRVALALRGRRKRTLHAITLSEAPMAVVPSEA 671 Query: 608 LHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD---WPAVDDESLLAALETW 664 + +G+ GL L W+ +Q R R+ K + WP + D +L A E W Sbjct: 672 TARVFADGLIAAGLDKLPWSKSLKQWRDRVTFLRKAEGDASQKLWPDLSDAALAEAREAW 731 Query: 665 LLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 L+P + +L+ + + D+ AL GLL W ++ RL+ E P H+ PTG+++AI Y + Sbjct: 732 LVPALFDKTALKDVSAGDLSDALMGLLPWDLRARLEREAPTHFEAPTGTQLAIDYEAEQG 791 Query: 725 PALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMK 784 P +AVR+QE+FG T+P++A G VPLVLELLSPAQRP+Q+TRDL FW+G+Y V+ +++ Sbjct: 792 PTIAVRLQELFGLTTHPSLAGGAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRTDLR 851 Query: 785 GRYPKHVWPDDPANTAPTRRTKKY 808 GRYP+H WP+DPA PTRR K Sbjct: 852 GRYPRHPWPEDPAGAPPTRRVKPR 875 >UniRef50_C5BNR7 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=C5BNR7_TERTT Length = 854 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 349/840 (41%), Positives = 483/840 (57%), Gaps = 35/840 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 + LP+A +L EL L Q++L AP GAGK+T +PL L + G KI++LEPRR+ Sbjct: 11 LPQLPIATLLDELALTLQHHHQLVLDAPPGAGKTTLVPLALRTAEWLRGRKIVMLEPRRV 70 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA+ A R+AELL E G T+GY MR + +T +EVVTEG+LTR +Q+DP L L Sbjct: 71 AAKAAAVRMAELLEEPVGKTIGYTMRLEQKCSRDTIIEVVTEGILTRRLQQDPSLDDTAL 130 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDD---LKLLIMSATLDNDRLQQMLPEAPVVIS 176 VI DEFHERS+ +DL LAL + ++ LRDD LKLL+MSATLD + +L AP + S Sbjct: 131 VIFDEFHERSMHSDLGLALCMQSRELLRDDTDPLKLLVMSATLDAQAIADLLGGAPKLTS 190 Query: 177 EGRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GRSFPVE Y P+ +A + L + SG L+FLPG EI +++ L+ Sbjct: 191 AGRSFPVEVTYAQHTPSRADLVSILATTVVQALNKHSGDCLVFLPGQREIHQLKAALSES 250 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQG---MRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + ++V + PLYG+LSL +Q+KAI P RKVVLAT+IAETSLTI+G+ +VVD Sbjct: 251 LSNEVAVMPLYGSLSLAEQQKAISPLTTDQIKTRKVVLATDIAETSLTIDGVHIVVDSGL 310 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R +FDPRTG+TRL T +S AS QRAGRAGRL PG + + AAQ+ PEI Sbjct: 311 ARKPKFDPRTGMTRLHTGPISIASSIQRAGRAGRLAPGNCYRCWTETAQHQRAAQATPEI 370 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG---ERLSAQGQ 409 LQSDL+ L M+LLQWG +DP Q+ WLD+PP A LL L A++ L+ GQ Sbjct: 371 LQSDLAPLAMQLLQWGVNDPQQLQWLDEPPKPAFQQACDLLFRLKAIDTPTACVLNEHGQ 430 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE--PPRMGNSDL---------GVAF 458 MA L PRLA +L+ A AA +AAIL E P ++DL + Sbjct: 431 AMAMLPLHPRLAHLLLVATEFGRLPLAASVAAILSEAIPDIGQHTDLMFVVETVEGRRSL 490 Query: 459 SRNQPAWQQRSQQLLKRL--------NVRGGEADSSLIAPLLAGAFADRIARRRGQD-GR 509 AW QR +Q L + D + + L+A A+ DRIAR+R Q R Sbjct: 491 PSQHRAWLQRIRQQRGLLLSLLSHNREANSTDEDLNALGLLIASAYPDRIARKRTQSRNR 550 Query: 510 YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 Y LANG A L ND+L+ EWL + + + RI A + ++L Q Sbjct: 551 YLLANGRAAQLSPNDSLAGTEWLAIADIGGVTNQSEDRIFAAASLTKEDLNSGLAAQKTQ 610 Query: 570 SDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE 629 +EW + + A +++IG + V+ + + + ++ A LN IR +GL VL W ++ Sbjct: 611 ERVIEW--RENRVLAQDQVRIGAILVEQRAASNVTAEDRTAATLNYIRLQGLGVLPWNSD 668 Query: 630 AEQLRLRLLCAAKWLPEYD-WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688 Q R R+ + WP + DE+L+ ++ WL P++ + +L+ LK LD+ + Sbjct: 669 INQWRARVALVRENDNSSALWPDLSDEALMETIDNWLAPYLIDIDNLQSLKRLDLASIVH 728 Query: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748 L W QQ L+ P VP+G+ I+I Y + +PP L V++QEMFG P+I G+V Sbjct: 729 AQLPWSQQQLLEQLAPTRIKVPSGNHISINYLQ-SPPQLEVKLQEMFGCEETPSIINGKV 787 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L++ LLSPA+RPLQIT+DL+ FW+ Y V+KEMKGRYPKH WPDDP + T+ TK+ Sbjct: 788 ALLIHLLSPARRPLQITQDLAGFWRNGYEAVKKEMKGRYPKHPWPDDPLSAQATQLTKRR 847 >UniRef50_A5VN69 ATP-dependent helicase HrpB n=36 Tax=Proteobacteria RepID=A5VN69_BRUO2 Length = 832 Score = 827 bits (2136), Expect = 0.0, Method: Composition-based stats. Identities = 374/818 (45%), Positives = 516/818 (63%), Gaps = 15/818 (1%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 + LPV +LP+L AL +L AP GAGK+T +PL +L G I+LLEPRRL Sbjct: 18 LPDLPVTRILPQLDEALAHHASAVLVAPPGAGKTTLVPLHMLGVDWRGEGVIVLLEPRRL 77 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A+LL E+PG+TVGYRMR ++ V TR+ VVTEGV RMI DP+L+GV Sbjct: 78 AARAAARRMAQLLGEEPGETVGYRMRLESKVSAKTRILVVTEGVFARMILDDPDLNGVAA 137 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 V+ DEFHERSL AD LAL LDVQ LRDDLK+L+MSATLD R+ +L +APV+ SEGR Sbjct: 138 VLFDEFHERSLDADFGLALALDVQAALRDDLKILVMSATLDGARVASLLGDAPVIESEGR 197 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 ++PV+ RY A +R +DA+A A + L E+GS+L FLPG GEI+R L R+ ++ Sbjct: 198 AYPVDIRYRDRKADERIEDAMARAIRDALVDETGSILAFLPGQGEIERTARLLEERLPAN 257 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 VLL PLYGA+ + Q AI PAP G RK+VLAT+IAETS+TI+G+R+V+D R+ +++ Sbjct: 258 VLLAPLYGAMEGSAQDAAIRPAPAGSRKIVLATSIAETSITIDGVRVVIDSGLARLPKYE 317 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P TGLTRL T R S+AS QRAGRAGR EPGI++ L + Q A S PEIL++DLSG Sbjct: 318 PATGLTRLETVRTSRASADQRAGRAGRTEPGIAIRLWHQGQTASLPAFSPPEILEADLSG 377 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDP 418 L+++ WG +DPA +++LD+P L AK LL LGAL+ RL+ G+ M +L Sbjct: 378 LVLDAAAWGVTDPATLNFLDKPLKPALAEAKALLHRLGALDEAGRLTPDGEAMRSLALPA 437 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGV-----AFSRNQPAWQQRSQQLL 473 RLA M+ A EA AA++A +L E +G D+ + F ++ QR++ L Sbjct: 438 RLAHMVTEAAKRGEAQAAAELAVLLTERG-LGGKDIDLETRLSRFRGDRSDRAQRARGLA 496 Query: 474 KRLNV---RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 KRL G S + LL A+ DRIA+ RG G++ LANG G +D +LSR Sbjct: 497 KRLAANLRNQGAPAGSTVGRLLIDAYPDRIAKARGTTGQFLLANGRGGEVDPAVSLSRAP 556 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 WL+ + + ARIL A E+ ++ + +D + L+A ++I Sbjct: 557 WLVVADM--SGKAGRARILSAAETSEAEIRAALGGRIESGKQIVYDPEKNALRAREAVRI 614 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 G + + + LA PS + ++ +R+ GLS+L W+ EAE LR RL + L + WP Sbjct: 615 GAIALSEKLLAAPSGAGADEGVIAAVREHGLSILPWSKEAEILRRRLGWLYRGLGD-PWP 673 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 +++D++LL LE WLLP +TG L + + L L+ + +Q+ +D P H+ P Sbjct: 674 SMEDDTLLERLEDWLLPFLTGEAQLDRIPGRVLKNGLMSLVPFDLQRSVDQLAPTHFEAP 733 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 TGS + IRY + P +AVR+QE+FG +P+IA G+VPL+LELLSPA RP+QITRDL Sbjct: 734 TGSHVPIRYDAEE-PVIAVRVQELFGLGAHPSIANGKVPLLLELLSPAHRPIQITRDLPG 792 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 FWKG++ +V+ +M+GRYPKHVWP+DPAN PTRR K Sbjct: 793 FWKGSWADVRSDMRGRYPKHVWPEDPANAMPTRRAKPR 830 >UniRef50_A8H0E4 ATP-dependent helicase HrpB n=20 Tax=Shewanella RepID=A8H0E4_SHEPA Length = 869 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 362/831 (43%), Positives = 503/831 (60%), Gaps = 23/831 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 ++SLP+ A+L L A C QV+L APTGAGKST LPL +L P I+GKI++LEPRR+A Sbjct: 36 VTSLPIHALLQPLRDAFSCCQQVILEAPTGAGKSTALPLDMLNWPEISGKILMLEPRRVA 95 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARNVAQ +A+ + G VGYR++ V NTRLE+VTEGVLTRMIQ+DPEL+GV +V Sbjct: 96 ARNVAQFIAKQRGCELGTEVGYRVKGDTRVSANTRLEIVTEGVLTRMIQQDPELTGVDMV 155 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DE HER L DL LAL L++Q R+DLK+L MSATL L +++P+A + SEGRS Sbjct: 156 IFDEIHERHLTTDLGLALALEIQASFREDLKILAMSATLSGLPLAELMPDAKQLKSEGRS 215 Query: 181 FPVERRYLPLPAHQRFDDAVA-VATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 FPVE Y +P + + +A V A + GSLL FLPG GEI ++ L+SR+ S+ Sbjct: 216 FPVEHAYSGVPNQSHWIEHMAKVIVASLQEHSQGSLLAFLPGQGEINKLHGILSSRLDSN 275 Query: 240 V-LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 V ++CPLYG+LS Q AI PA G+RKVVLATN+AE+SLTI+GI V+D +R ARF Sbjct: 276 VYVICPLYGSLSARAQDLAIAPAANGIRKVVLATNVAESSLTIDGITQVIDSGYKRQARF 335 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 +P+TG+TRL +R+SQAS QRAGRAGRL G L ++E+ R EPEI+ SDL Sbjct: 336 NPKTGVTRLSLKRISQASAAQRAGRAGRLMAGFCTRLWSQEEHGRLLKADEPEIVHSDLL 395 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGND 417 ++++ WG ++ L QP N + RLLQ + + R ++ G++ LG + Sbjct: 396 SMVLDAAYWGVKSLNELPMLTQPSAANEDVSWRLLQTMAMVNESRSITQHGRQAHKLGCN 455 Query: 418 PRLAAMLVSAK-------NDDEAATAAKIAAILEEPPRMG-NSDLGV-AFSRNQPAWQQR 468 PRLA ML+ AK + + A +A LE R +D+ Q ++ Sbjct: 456 PRLAHMLLMAKQSAEDNQDLNLGLLACILAGTLEARSRSRQGADISRYLLEALQGESSKQ 515 Query: 469 SQQLLKRLNVRG----------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGA 518 + +K L + A S IA LLA A+ DRIA+ RG G YQLANG G Sbjct: 516 IRNWVKTLGLSALGQLDLAQVARNASSDDIAMLLALAYPDRIAKARGVTG-YQLANGSGV 574 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 L DALS WL+ L + A++ LA ++ LV + WD+ Sbjct: 575 ELANEDALSGSPWLVVADLQETEGRSQAKVYLAAQLNPQLFDSELASLVLTQEYGGWDEV 634 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 +G A ++ +IG++ + P+ + + QA+L IR KGL+++N+ +QL+ R+ Sbjct: 635 KGRFFAEKQQKIGEILLTKTPIHNVDKRLIKQAILEQIRLKGLALMNFNEACQQLQQRVA 694 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 A ++ PE+ WPA+D ++LL L++WL P++ V SL L+ LD Y L LL W +QQ+ Sbjct: 695 LARQYCPEHGWPALDSDTLLNELDSWLAPYLDEVRSLAQLQQLDCYTLLLNLLPWELQQQ 754 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 L+ LP + + TGS + I Y L+VR+QE G +P +AQG++ + +ELLSPA Sbjct: 755 LEGLLPRKWPMATGSSVKIEYDATGRALLSVRLQEALGMQQSPRLAQGKLVVTMELLSPA 814 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 RPL +T DL FW+G Y V+KEMKGRYP+H+WPDDPANT PT+ TKK + Sbjct: 815 HRPLALTADLESFWQGPYEHVKKEMKGRYPRHLWPDDPANTQPTKFTKKKT 865 >UniRef50_A9DCL0 ATP-dependent helicase HrpB n=1 Tax=Shewanella benthica KT99 RepID=A9DCL0_9GAMM Length = 876 Score = 824 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 357/857 (41%), Positives = 487/857 (56%), Gaps = 49/857 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 ++ LP+ +L L A QV+L APTGAGKST LPL +L + GKI++LEPRR+A Sbjct: 15 LNQLPIHQLLLPLREAFRANNQVILEAPTGAGKSTALPLAMLDWSELKGKILMLEPRRVA 74 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA +A + G VGYR+R ++ G +TRLE+VTEG+L RMIQ+DPELSG+ L+ Sbjct: 75 ARSVAHYIASQRGTQIGAEVGYRVRGESRCGTSTRLEIVTEGILARMIQQDPELSGIALI 134 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DE HER L DL LAL L++Q R+DLK+L MSATL L ++P+A + SEGRS Sbjct: 135 IFDEIHERHLTTDLGLALALEIQGSFREDLKILAMSATLAGLPLSTLMPDACSLQSEGRS 194 Query: 181 FPVERRYLPLPAH-------------------------------QRFDDAVAVATAEMLR 209 FPVE Y L A A Sbjct: 195 FPVELGYRSLAESKGRNQGANPYQNSTQIWLEHMGKCIVDLLNGDDKHLASIDADVASDI 254 Query: 210 QESGSLLLFLPGVGEIQRVQEQLASRIGSDVL-LCPLYGALSLNDQRKAILPAPQGMRKV 268 SGSLL FLPG GEI R+ + L+ R+ ++ LCPLYG+L Q KAI PA G RK+ Sbjct: 255 DSSGSLLAFLPGQGEIMRLHDYLSKRLDLNLFSLCPLYGSLPAKAQDKAIAPATDGKRKI 314 Query: 269 VLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLE 328 VL+TN+AE+SLTI+GI +VVD +R A F+P+TG+TRL +R+SQAS QRAGRAGRL Sbjct: 315 VLSTNVAESSLTIDGITMVVDSGYKRHASFNPKTGVTRLALKRISQASAAQRAGRAGRLS 374 Query: 329 PGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLA 388 G L L ++E+ R EPEIL SDL + ++ WG + L QP N Sbjct: 375 AGYCLRLWSQEEQGRLIKADEPEILHSDLVPMSLDAAYWGVKALNDLPLLTQPSKANETV 434 Query: 389 AKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAK-------NDDEAATAAKIA 440 A +LL +L ++ +R L+ G + LG PRLA ML+ AK +D A +A Sbjct: 435 AWQLLALLELVDAQRKLTRHGSQAYQLGCHPRLAHMLLKAKTLSQTEGDDHLVGLACLLA 494 Query: 441 AILEEPPRMGNSD-----LGVAFSRNQPAWQQRSQQLLK---RLNVRGGEADSSLIAPLL 492 ILE + L + + + LK L+ S IA LL Sbjct: 495 GILESRSLGRHGVDISNYLRESIQGEAGKQVRTWMKKLKVNIDLSRLVSSVGSGDIALLL 554 Query: 493 AGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLAL 552 A AF DRIA+ RG G YQLANG G L +D L+R +WL+ + R+ LA Sbjct: 555 ALAFPDRIAKSRGVSG-YQLANGTGVTLAEHDPLARADWLVVADFQESEGRTSGRVYLAA 613 Query: 553 LVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAM 612 +D D +R LV+ D WD+A+G A R +IGQ+ + +P+ +++ A+ Sbjct: 614 EIDEDLFNKRLSFLVKSQDYCGWDEAKGRFFAECRQRIGQIVLSKTASNQPAPEQVKAAI 673 Query: 613 LNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGV 672 IR KGL +L++ + QL+ R+ A++ + WP + ++ LL LE WL P++ V Sbjct: 674 FEQIRSKGLELLDFNHKTLQLQSRVKLASELDTDTGWPDIGEQHLLDTLEDWLGPYINDV 733 Query: 673 HSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQ 732 SL L++LD Y L L +W +QRLD P H+ + TG+R AI Y + L+VR+Q Sbjct: 734 RSLSQLRALDCYTQLLNLFEWDKRQRLDKLFPCHWPMATGTRAAITYDDAGRAKLSVRLQ 793 Query: 733 EMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 E G A +P +A G++ + +ELLSPA+RPL +T DL+ FW+G Y EV+KEMKG+YPKH+W Sbjct: 794 EALGMAQSPILANGKLTVTMELLSPARRPLALTADLASFWQGPYVEVKKEMKGKYPKHLW 853 Query: 793 PDDPANTAPTRRTKKYS 809 PDDPANT PTR TKK + Sbjct: 854 PDDPANTLPTRFTKKKT 870 >UniRef50_C1AEB6 ATP-dependent helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEB6_GEMAT Length = 849 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 349/847 (41%), Positives = 486/847 (57%), Gaps = 43/847 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 ++ LP+ + LPELL AL +L AP GAGK+T +PL LL + +I++LEPRRL Sbjct: 5 LTPLPIDSALPELLAALQQRAVAVLEAPPGAGKTTRVPLALLDTSWLGTQRIVMLEPRRL 64 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A +A E G TVGYR+R + V TR+EVVTEGVL R++ D L G G Sbjct: 65 AARAAATYMARQCGESVGGTVGYRVRGETRVSARTRIEVVTEGVLARLLSADATLDGYGA 124 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA----PVVI 175 VI DEFHERSL ADL LAL+L+ QQ LR +L++L+MSATLD D + ++ +A PVV Sbjct: 125 VIFDEFHERSLHADLGLALVLETQQQLRAELRVLVMSATLDGDAVAALIADAGGAAPVVR 184 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 S GR FPV + A +R + + E L+ G +L+FLPG GE +RV E+L Sbjct: 185 SAGRMFPVTTHHRASRADERVEATTSRVIREALQDTEGDVLVFLPGAGEQRRVAERLQGG 244 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + + V + L+G++ L +Q A+ PAP G RKVVL+T+IAETSLT+EG+R+V+D R Sbjct: 245 QDLARVHVHVLHGSMPLAEQDAALAPAPSGWRKVVLSTSIAETSLTVEGVRVVIDVGLSR 304 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 + RFD GLTRL T RVS+AS QR GRAGR PG L + A + PEI+ Sbjct: 305 IPRFDAAAGLTRLHTVRVSRASADQRRGRAGRTAPGSCYRLWDVHEEHVMPAATRPEIVD 364 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 +DLS L +EL G DP Q+ WLD P AA+ LL LGAL+ + R++ G++MA+ Sbjct: 365 ADLSSLALELADAGIGDPLQLRWLDAPKAAPFAAARALLTQLGALDAQGRITPHGKRMAS 424 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-----------------------G 450 + PRLA +L+ A E A IAA+LEE + G Sbjct: 425 MPLAPRLAHLLLMAATRGETMAGAAIAALLEERDVLRADGGRPPADLRLRTELLRRDGDG 484 Query: 451 NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG--------EADSSLIAPLLAGAFADRIAR 502 + G+ + +R++Q ++ L RG I LLA AF DR+A+ Sbjct: 485 GTSAGLFGASVDRDATRRARQSMQDLLRRGDFGAVDAKAPWSDDDIGALLALAFPDRVAQ 544 Query: 503 RR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQ 561 RR G + RY + NG GA+L+ D L WL L P+ RI+ A + ++E+ Sbjct: 545 RRSGPEPRYLMRNGSGAILEKRDGLHDAPWLAIAEL--EGQPPEYRIVRAAPITLEEITA 602 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 + + WDD +++A R +G L ++ +P + D + A++ ++ G+ Sbjct: 603 DFSEQYVREPRAWWDDTTRSVRATLRTTLGALVLEEKPWRDVAADTVRAALITHLQRIGV 662 Query: 622 SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSL 681 W+ A +LR RL+ + + WP V D++LL +LE WL P + V + L+SL Sbjct: 663 DAWPWSDGATRLRERLMFLHR--QDVSWPDVSDDALLVSLEEWLGPFLENVRNWSQLESL 720 Query: 682 DIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNP 741 D ++AL L+ W + LD P H VP+GSRIA+ YH+ P LAV++QE FG T P Sbjct: 721 DWHEALASLVPWSQRAALDRLAPTHIEVPSGSRIAVDYHDTEAPVLAVKLQECFGWTTTP 780 Query: 742 TIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAP 801 T+ GRVPL + LLSPAQRP+Q+TRDL+ FWKG+Y EV+KE++GRYP+H WPDDP P Sbjct: 781 TLFDGRVPLTMHLLSPAQRPVQVTRDLAGFWKGSYFEVRKELRGRYPRHPWPDDPLTAVP 840 Query: 802 TRRTKKY 808 TRR K Sbjct: 841 TRRAKPR 847 >UniRef50_Q15YM0 ATP-dependent helicase HrpB n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YM0_PSEA6 Length = 823 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 333/818 (40%), Positives = 477/818 (58%), Gaps = 15/818 (1%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LPV LP L L+ +L AP GAGKST +PL LL H KII+L+PRR+A Sbjct: 3 TQLPVEDTLPALHDGLNNNDV-ILVAPPGAGKSTRVPLALLQHSTFATRKIIMLQPRRIA 61 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARN+A LA+ L E+ G TVGYR+R + V TRLE+VTEG+LTRM+Q DPELS V LV Sbjct: 62 ARNIAHYLAKQLGEEVGQTVGYRIRGDSRVSKATRLEIVTEGILTRMLQNDPELSSVSLV 121 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ AD +LAL L+V+ LRDDL+LL+MSATLD L+++LP A + EGR Sbjct: 122 IFDEFHERSMHADFSLALCLEVKDALRDDLRLLVMSATLDVSSLEKLLPNADSIACEGRG 181 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +P+E Y P D A T + G +L+FLPG EI+R ++ LA + Sbjct: 182 YPIETYYRPDATAGSIVDKTARLTLFAAAEHQGDILVFLPGQAEIRRCEKILAQSLSKGC 241 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+ +L Q A+LP PQG RK++LATNIAETSLTIEG+ +VVD ++ A + Sbjct: 242 QIHCLFSQQTLAAQEAALLPDPQGRRKIILATNIAETSLTIEGVSVVVDSGMQKGAIYQL 301 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 GLT+L +Q +S+AS QRAGRAGRL PG+ L +KEQ +R A + EIL SD+S Sbjct: 302 NKGLTQLRSQMISKASAIQRAGRAGRLGPGVCYRLWSKEQHQRLAEHGQAEILTSDISPF 361 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 L+E WG ++ + +D P + A +L L ++ +++ G+++ +LG+ Sbjct: 362 LLEACVWGAQ-ISEFALIDMPSDAQIAQAHSVLMGLQIIDANFQVTPHGKEVHSLGSQAH 420 Query: 420 LAAMLVSAKND--DEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQ------- 470 +A ML+ + + A +AA+LE+ +G + + R Q +S Sbjct: 421 IATMLLKSSELSAGHRSLACALAALLEDKDPLGAQAGSLCYDRLTLLQQHKSHPLWRAIR 480 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 Q K+L LL AF IA + GRY L +G GA L +D+L Sbjct: 481 QWHKKLACDVTHWPLEDTGVLLGFAFPHWIA-KASDSGRYGLVDGTGAQLSEHDSLMGQS 539 Query: 531 WLIAP-LLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 WL ++L SA +A+I+LA + ++ + L+ EWD ++ + + Sbjct: 540 WLAVGQMMLTNSAQSNAKIMLAEPLSRQQIDKYFNHLIDSETRCEWDSSRSAIVTQSVQR 599 Query: 590 IGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 +G++ +K P AKPS +++ I+++G+ L + A QL RL A ++L + W Sbjct: 600 LGRIVLKKMPSAKPSVEQITALWHKQIKERGVMSLPFNDAALQLIYRLRMAKEYLTDGQW 659 Query: 650 PAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTV 709 P V + LL+ L WL+P++ V S + L LD Y L LD+ QQ L+ P TV Sbjct: 660 PDVSEFGLLSNLHHWLMPYLHDVLSWQQLSKLDFYSLLFNQLDYASQQALNQLFPTKITV 719 Query: 710 PTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLS 769 P+ SRI+++Y + +L+VRMQE++G A P++A+G+V + + LLSPA RPLQ T+DL+ Sbjct: 720 PSTSRISVQYDDVGGASLSVRMQEVYGLADTPSVARGKVKIQMILLSPAGRPLQQTQDLA 779 Query: 770 DFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FWKG+Y+EVQKEMKGRY KH WPDDPAN T +TKK Sbjct: 780 GFWKGSYKEVQKEMKGRYQKHFWPDDPANAQATSKTKK 817 >UniRef50_Q0FF79 DEAD/DEAH box helicase n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FF79_9RHOB Length = 826 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 310/829 (37%), Positives = 466/829 (56%), Gaps = 39/829 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ VL EL+ A+ +L AP GAGK+T +P+ LLA KII+L+PRRLA R+ Sbjct: 8 LPIDEVLNELIKAMREKNHAVLQAPPGAGKTTRIPIALLASDLFEKKIIMLQPRRLAVRS 67 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+RLA+ ++ G TVGYRMR ++ V TR+EVVTEGVL +MIQ DPEL+ V +I D Sbjct: 68 AAKRLAQHYGDQLGQTVGYRMRGESKVSNKTRIEVVTEGVLIKMIQNDPELNNVSCIIFD 127 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERSL ADL L L+++ LR+DL +L+MSATLD + +++ +APV+ S G+S+ V Sbjct: 128 EFHERSLSADLGLTFCLEIRSELREDLGILVMSATLDAAPVAKLMGDAPVITSSGKSYDV 187 Query: 184 ERRYLPLP------AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 YL P F A++ + + GS+L FLPG EI++VQ L +++ Sbjct: 188 CPYYLSKPWKFNKTFKNDFIQAISGLIIKAFEENEGSILAFLPGAREIKQVQTFLKAKLA 247 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +D+ + PLYGA+S ++Q+KAIL P RK++LAT+IAETSLTI+ IR+V+D R +R Sbjct: 248 NDLDIYPLYGAMSFDEQQKAIL--PSCRRKLILATSIAETSLTIKDIRIVIDSGLTRRSR 305 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP +G++RLIT+RV++A QR GRAGR G+ L K + EPEIL SDL Sbjct: 306 FDPSSGMSRLITERVTKAEAIQRMGRAGRTNTGVCYKLWTKGEEGGLKPFPEPEILISDL 365 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGN 416 S L MEL WG S+P + +L QP + A+ LL+ LGAL + +++A GQK++ Sbjct: 366 SPLAMELAAWGVSNPKNLPFLTQPKSSDFQTAQELLRDLGALNDNGKITALGQKISLEPT 425 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG---NSDLGVAFSRNQ----------- 462 PRLA +L+S D A + A++E +G +D + + Sbjct: 426 HPRLARILISGGQD-----ANLVVALIESKDILGPNSPTDFKLRIDAMKNSISFENNNPY 480 Query: 463 ---PAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIAR-RRGQDGRYQLANGMGA 518 +L KRL+ +G S+ A ++A A+ DRI R G++ L+ G GA Sbjct: 481 AINKKASSNVLKLSKRLHPKGQLELSN--AQMVALAYPDRIGLSRNQNRGQFLLSGGKGA 538 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 + A+D L+ + ++A L +A++ + + + E ++ ++ EW Sbjct: 539 FISASDQLASAKMIVALNLD--GDKREAKLRIGIEILETEFMELFHDQIKFKRICEWSKR 596 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 + + L + + + + + +A+L GI D GL +L WT++ + R Sbjct: 597 ELKVITSEEKTFQSLVLSKKKWTSCNPELIAKALLMGINDIGLDILPWTSKTKNFLARAN 656 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 + P E L WLLPH+ G S L+ L++ ++ L W + Sbjct: 657 KLNQ--TSDFLPNCSLEFLSKKTHEWLLPHLVGFRSKGDLEKLNMIDIIKNLFSWKQIEY 714 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 L+ P PTG+++ I Y E+ P + +R+QE+FG T+PTI + PL++ELLSPA Sbjct: 715 LNKNAPEFILAPTGTKMIINYSEEQ-PKIRIRLQELFGLKTHPTIGENNEPLLVELLSPA 773 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 R +Q T DL FW +Y +V+++M+GRYP+H WP+DP N PTRR KK Sbjct: 774 MRIVQTTSDLPKFWLTSYSDVRRDMRGRYPRHPWPEDPMNAEPTRRIKK 822 >UniRef50_C0QI12 HrpB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI12_DESAH Length = 844 Score = 816 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 339/841 (40%), Positives = 484/841 (57%), Gaps = 37/841 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP+ V+PE+ AL +V++ AP GAGK+T +PL LL P + + I++LEPRR+AAR Sbjct: 6 LPIDRVMPEIKAALMTNQRVIIKAPPGAGKTTRVPLALLDEPWLGHRNILVLEPRRIAAR 65 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A R+++LL+E G TVGY + V P TR+EV+TEG+LTR IQ DP L G GLVI Sbjct: 66 AAASRMSDLLHEPLGQTVGYHISMDRKVSPKTRIEVITEGILTRRIQSDPGLLGTGLVIF 125 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER+L +DL LAL LD +DLK+++MSATL+ L +++ A VV S+G+ FP Sbjct: 126 DEFHERNLSSDLGLALCLDAMGAFCEDLKIVVMSATLEAAPLCELMGRAGVVESQGKIFP 185 Query: 183 VERRYLPL----PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-SRIG 237 V+ RYL + + +A L ++ G +L FLPGVGEI+R L S++ Sbjct: 186 VDTRYLEPGPGAKKDEFLEVRMARVILNALARDRGDILAFLPGVGEIRRTAALLNPSKLS 245 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + V + PL+G L+ DQ +AI A G RKVVLAT IAETSLTIEG+ +VVD R R Sbjct: 246 ACVSVLPLHGNLTQKDQDRAIQAARAGQRKVVLATAIAETSLTIEGVHVVVDSGLVREPR 305 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 F PRTG++ L T S+AS+ QR GRAGR PGI L +++ PEI +DL Sbjct: 306 FSPRTGMSALETFDASKASVDQRRGRAGRTGPGICYRLWSRQTQGDRTENVRPEIFNTDL 365 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGN 416 +GL +EL WG DP ++ WLDQPP + A+ LL LGAL+ + R+ A G+ +A LG Sbjct: 366 AGLALELALWGVRDPGELKWLDQPPKAAMDQARTLLVRLGALDAQGRIKAHGRALAGLGV 425 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM------GNSDLGVAFS----------- 459 PRL ML++ K A A +AAI++EP M ++DL + Sbjct: 426 HPRLGHMLLTGKAMGMGALACLVAAIVQEPDFMVRTNNAWDADLRLRVELLVSDPRSIRD 485 Query: 460 -----RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIAR-RRGQDGRYQLA 513 ++ + +L L V+ D + LLA A+ +R+A R +DGR+ LA Sbjct: 486 RSLKGGTLARVRKIAGKLRHTLGVKDESVDPNRAGNLLALAYPERVAMNRNSRDGRFLLA 545 Query: 514 NGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTV 573 +G G +L D L+ E ++A + + +A+I +A + EL Q Q +Q D V Sbjct: 546 SGRGGILPKADPLAWEEMIVAAHVD--GKNTNAKIFMAAPISRTELEQTFEQNIQVVDRV 603 Query: 574 EWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQL 633 WD + +KA + L + L P+ + + +L GIRD+G+ +L WT + Sbjct: 604 FWDASAKAVKAVKERCYMGLVLSSHALENPNPELILSGLLQGIRDQGVGILAWTPGLRRF 663 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW 693 + R + + L + +P + D+ L +LE W +P M S+ +K +D+ L LL Sbjct: 664 QARAVFLNRILGDEGFPDLSDKVLEESLERWFVPFMGTALSMSRVKRMDLKVPLLSLLTH 723 Query: 694 GMQQRLDSELPAHYTVPTGSRIAIRYHED-----NPPALAVRMQEMFGEATNPTIAQGRV 748 G + L+ P+H VP+GS+I + Y E + P L VR+QEMF T PT+A GRV Sbjct: 724 GEHRLLERHAPSHLLVPSGSKILLDYGEQASGCIDSPVLRVRIQEMFACTTTPTVAMGRV 783 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 P+ + LLSPAQRP+Q+T+DL+ FW Y +V+KE+KGRYPKH WPDDP + TRRT + Sbjct: 784 PVTIHLLSPAQRPVQVTQDLASFWDNTYAQVKKELKGRYPKHFWPDDPRSAPATRRTMRN 843 Query: 809 S 809 S Sbjct: 844 S 844 >UniRef50_A4XYS1 ATP-dependent helicase HrpB n=13 Tax=Gammaproteobacteria RepID=A4XYS1_PSEMY Length = 844 Score = 815 bits (2106), Expect = 0.0, Method: Composition-based stats. Identities = 390/845 (46%), Positives = 521/845 (61%), Gaps = 39/845 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M++LP+ A+LP L AL +V+L AP GAGK+T +PL LL P + G+ I++LEPRRL Sbjct: 1 MNALPIDALLPALRDALSARHEVVLEAPPGAGKTTRVPLALLDAPWLAGQTILMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+RLA L E+ G+TVGYR+R + VGPNTR+EVVTEG+L R +Q DP L GVGL Sbjct: 61 AARAAAERLASELGERVGETVGYRIRLDSKVGPNTRIEVVTEGILARRLQDDPALEGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDD------LKLLIMSATLDNDRLQQMLPEAPV 173 V+ DEFHERSL ADLALAL L+ + R + LK+L+MSATL+ +RL +L EAPV Sbjct: 121 VVFDEFHERSLDADLALALTLNGRAMFRGEGSGEAPLKVLLMSATLEGERLAALLGEAPV 180 Query: 174 VISEGRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 + SEGR FPV+ + P + + V + L E GSLL+FLPG EI+RV EQL Sbjct: 181 LRSEGRMFPVDICWGAPFQPGEWIEPRVLQTVQQALADEPGSLLVFLPGQAEIRRVAEQL 240 Query: 233 ASRIG--SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + D+LLCPL+G L L QR AI PAP G RKVVLATNIAETSLTI+G+R+VVD Sbjct: 241 GEALAGRDDILLCPLHGELDLAAQRAAIEPAPAGTRKVVLATNIAETSLTIDGVRVVVDA 300 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 RV RFDP +G+TRL TQR+S+AS TQRAGRAGRL+PG+ L ++ Q E+ +A S Sbjct: 301 GLARVPRFDPASGMTRLDTQRISRASATQRAGRAGRLQPGVCYRLWSQAQHEQLSAYSGA 360 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQ 409 EIL +DL+GL ++LL+WG + P ++SWLD PP A LL LGAL+ L+A GQ Sbjct: 361 EILAADLAGLALQLLRWGVT-PQELSWLDVPPPAAYAQALDLLGRLGALDERGALNAHGQ 419 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFS-------- 459 MA L + PR+A +L+ + A A +AA+L E R G +DL + Sbjct: 420 AMAELPSHPRIAHLLLRGQALGLGALACDLAALLSERDILRGGGADLHSRLALLSGESRA 479 Query: 460 -RNQPAWQQRSQQLLKRL----------NVRGGEADSSLIAPLLAGAFADRIA-RRRGQD 507 R+ QR++QL K+ + LLA A+ DRIA +RR Sbjct: 480 TRSAQGGVQRARQLAKQFQGLLKGRLVIGAVSDPEHPRWLGCLLAFAYPDRIAQQRRAGG 539 Query: 508 GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLV 567 Y+LANG A DAL +HEWL+ L + RI LA +D + + V Sbjct: 540 ADYRLANGRAAQFAEADALMKHEWLVVADLGSRQGQREERIYLAADLDPALFERELAEQV 599 Query: 568 QQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWT 627 + ++WD+ +G L+A R+ ++G+L ++ Q LA ED +A++ +R KGL +L WT Sbjct: 600 TTLEVLDWDEREGVLRAERQRKVGELVLERQALAALDEDTRSRALVGLVRRKGLELLPWT 659 Query: 628 AEAEQLRLRLLCAA----KWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDI 683 E Q + R+ + + +WP + D +LLA+LE WL P + V+ L +LD+ Sbjct: 660 PELRQWQARVALLRELDLQQHGQSEWPDLSDAALLASLEQWLAPFLGKVNRLSHFANLDL 719 Query: 684 YQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTI 743 L+ LL W + QRLD P +VP+GSRIAI Y +NPP LAVR+QE+FG A P I Sbjct: 720 PAILQTLLPWPLPQRLDELAPRTLSVPSGSRIAIDYT-ENPPVLAVRLQELFGLAATPRI 778 Query: 744 AQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTR 803 A GR+ L L LLSPA+RP+Q+T+DL+ FW Y EV+K++KGRYPKH WPDDP PT Sbjct: 779 AGGRLGLKLHLLSPARRPVQVTQDLASFWANTYLEVKKDLKGRYPKHYWPDDPLIAEPTA 838 Query: 804 RTKKY 808 R K Sbjct: 839 RAKPR 843 >UniRef50_C7LWJ1 ATP-dependent helicase HrpB n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWJ1_DESBD Length = 822 Score = 814 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 348/817 (42%), Positives = 485/817 (59%), Gaps = 20/817 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ A+LPEL L L+ AP G+GK+T +PL LLA + KI++LEPRRL Sbjct: 11 MPPLPIDAILPELADTLTTGAACLVHAPPGSGKTTRIPLALLASAWLGKNKILMLEPRRL 70 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+ +A LL EK G VGYR R V TR+EVVTEG+LTRM+Q DPELSG Sbjct: 71 AARAAARHMAGLLGEKAGARVGYRTRLDIRVSSATRIEVVTEGILTRMLQHDPELSGYAC 130 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE+HERSLQADL LAL L+V+ LR DL+L++MSATLD + ++ +V G+ Sbjct: 131 VIFDEYHERSLQADLGLALCLEVRAALRPDLRLIVMSATLDAKAVADLIAPCRIVECPGQ 190 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 VE RYL + ++ +A A L E GS+L FLPG EI+R E L G+ Sbjct: 191 PHAVETRYLRVSGR-FLEERMAFAIRHALTTEHGSILAFLPGAREIRRTAELLGP-PGAG 248 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V + PL GAL+ +Q KAI P G RK+VL T IAETSLTIEG+R+V+D R+ RFD Sbjct: 249 VEIHPLLGALTATEQDKAIAPPAPGTRKIVLTTAIAETSLTIEGVRIVIDSGLSRLPRFD 308 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P++ +T L+T+ + A++TQR GRAGR EPGI + + PE+L++DL+ Sbjct: 309 PKSSMTVLVTEPAALATVTQRRGRAGRTEPGICFRIWDQTDEISRKPYPAPEMLEADLAP 368 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 L+++L WG +DPA +SWL PP + +A RLLQ L AL+ + R++ G++MA L P Sbjct: 369 LVLDLALWGTTDPATLSWLTPPPPGHFNSALRLLQSLEALDDQGRITPHGREMALLPLHP 428 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRS------Q 470 RL M++SA+ TAA +AAIL EP R G+SDL + + ++ + Sbjct: 429 RLGHMVLSARKHGLGPTAAALAAILGEPGRSMRGSSDLRDSLRIHPSTLSRKDTLRASME 488 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 Q+ + ++ + D L A A+ DRIARR+ +DG Y+L +G A+ L+ HE Sbjct: 489 QIARLASINLEQPDPEAAGILTALAYPDRIARRQ-EDGSYRLTSGRKAVWPGPSTLAGHE 547 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 +L L +A A+I + + DEL Q ++ D V +D + + + R++ + Sbjct: 548 FLAIADLDGDAAG--AKIWQSAPLSWDELQTHFRQQFRKEDEVRFDPLKDRVVSLRKIML 605 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 L ++ + L + + A+L G +D L+ LNW+ E + LR R+ P WP Sbjct: 606 DTLCMREEKLGT-DPETVTSALLRGQKD--LARLNWSEECKNLRDRIRFLRSLDPA--WP 660 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 + D++LL ++ WL P TG S L +++ QAL+ L+ W + LD + P TVP Sbjct: 661 DMSDQALLESINEWLAPFATGARSQADLGKINLLQALKALVGWDKMRELDRQAPEFMTVP 720 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 TG+ I Y ++ PAL V++QEMFG AT PT+A G LVL LLSPA RPLQ+TRDL Sbjct: 721 TGAHRRIDYSPESGPALPVKLQEMFGCATTPTLADGGYALVLHLLSPAGRPLQVTRDLPS 780 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FWK AY V+ EM+GRYPKH WP+DPA PT +TKK Sbjct: 781 FWKNAYPLVRAEMRGRYPKHPWPEDPATAMPTAKTKK 817 >UniRef50_A0YC48 ATP-dependent helicase HrpB n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC48_9GAMM Length = 909 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 330/900 (36%), Positives = 485/900 (53%), Gaps = 93/900 (10%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--------GKII 52 + LP++ VL + +L+ Q++L AP GAGK+T +PL +L H +I+ Sbjct: 7 LPELPISDVLTNIDLSLEQHLQLVLEAPPGAGKTTLVPLSILKHQSDKPIKNWLGQQRIL 66 Query: 53 LLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDP 112 +LEPRR+AAR+ A R+A LLNE G TVGYR+R + V +TR+EV+TEG+L RM+ +DP Sbjct: 67 MLEPRRMAARSAATRMASLLNEPVGKTVGYRVRQETKVSRHTRIEVITEGILVRMLIQDP 126 Query: 113 ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD---DLKLLIMSATLDNDRLQQMLP 169 L+ +GL+I DEFHERSL ADL LA L ++ RD L++LIMSATLD + +L Sbjct: 127 SLADIGLLIFDEFHERSLDADLGLAFALQGREIFRDASNPLRILIMSATLDGSAIASLLD 186 Query: 170 EA----------PVVISEGRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLF 218 A P++ S G+ +PV Y H+ +A E+ G +L+F Sbjct: 187 SAREDPTDTAATPIISSLGKQYPVAIHYGARKQQHEDIIKRTVLALIEITNTLEGDILVF 246 Query: 219 LPGVGEIQRVQEQLASRIGSDVL----LCPLYGALSLNDQRKAILPAPQ-----GMRKVV 269 LPG EI V+ + ++ + + PLYGAL Q++AI P Q G RK+V Sbjct: 247 LPGYKEINNVRGRFSASLSDSQSSLLHIFPLYGALPFALQQQAIEPLSQADRQRGARKIV 306 Query: 270 LATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEP 329 LAT+IAETSLTIEGI +V+D R F P TG+TRL T +SQ S QR GRAGRLEP Sbjct: 307 LATDIAETSLTIEGITIVIDSGLCRQPIFSPATGMTRLQTNSISQDSSIQRMGRAGRLEP 366 Query: 330 GISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAA 389 G L ++EQ + S PEILQ+DL+ L ++LL WG +P +++WLD PP L A Sbjct: 367 GQCFRLWSEEQQKLLPRHSPPEILQADLASLTLQLLAWGIHEPEELAWLDIPPRGALSQA 426 Query: 390 KRLLQMLG----------------ALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEA 433 LL+ LG AL+ L+ G ++ +L PRLA ML+ ++ ++ Sbjct: 427 LDLLKQLGVIQQHDKQKALTDNEPALDHWVLTPHGTQLVSLPIHPRLAHMLLRSRTINQQ 486 Query: 434 ATAAKIAAILEEPPRMGN---SDLGVAFSRNQ---------PAWQQRSQQ-------LLK 474 AA +A +L + + N +D+ + Q +WQQR+Q+ LL Sbjct: 487 KVAAALAVLLTDRSPLSNRFDTDITTQIAIVQGTSHCQKQFRSWQQRAQRQALLFEKLLS 546 Query: 475 RLNVRGGE------------ADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLD 521 L+ E A+ + LLA A+ DRIARR+ +Y L+NG A++D Sbjct: 547 DLSTDADESCSENDSDANAIAEQNAAGYLLACAYPDRIARRKSAHSNQYLLSNGRTAIID 606 Query: 522 ANDALSRHEWLIAPLLLQG-------SASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 D HEWL A ++ ++ RI A +DI+ L+ S ++ Sbjct: 607 FADPCCGHEWLSAAEVVGSTQTQKTPQSNNTDRIYSACPLDINLFDGALSYLINASTSIH 666 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 WD+ A + +G + ++ + L + + A++ I+ +GL++L WT Q + Sbjct: 667 WDENTDRFSAEKTHAVGAIVLRKERLENITLESKINAIVTHIQKRGLNILPWTKSTRQWQ 726 Query: 635 LRLLCAAKWLP------EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688 R+ + WP V D+ LLA+LE WL P ++ + LD+ L Sbjct: 727 ARVTLLRRIYSSSNDKARSPWPDVSDQHLLASLEHWLTPFLSKIGKRSDFDKLDLQAILN 786 Query: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748 LL W + Q+L + P TVP+G + I Y + P L V++QEMFG + PTIA+G + Sbjct: 787 TLLPWPLPQQLTALAPLTITVPSGHQAGIDYSQT-SPVLNVKLQEMFGCRSTPTIAEGNI 845 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L+++LLSPA+RPLQ+T+DL FWK +Y +V+KEM+GRYPKH WPD+P T+ TK+ Sbjct: 846 KLIVQLLSPARRPLQVTQDLEGFWKTSYHDVKKEMRGRYPKHPWPDNPLEAVATKYTKRN 905 >UniRef50_B3EB95 ATP-dependent helicase HrpB n=1 Tax=Geobacter lovleyi SZ RepID=B3EB95_GEOLS Length = 798 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 353/811 (43%), Positives = 488/811 (60%), Gaps = 30/811 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLAAR 62 LP+ VLP+LL L ++LSAP GAGK+T +PL LL P NG+I++LEPRR+AA Sbjct: 6 LPIDRVLPQLLATLQTHASIVLSAPPGAGKTTRVPLALLKIIPPGNGRILMLEPRRIAAV 65 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 + A+ +A L E+ G TVGY +R + + TR+EVVTEG+LTR +Q DPEL+GV +I Sbjct: 66 SAARYMAASLGEQVGQTVGYTIRFERRLSAQTRIEVVTEGILTRRLQEDPELAGVACIIF 125 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERS+ ADL LAL L+ Q LR DLKLL+MSATLD L ++L +AP++ SEGRSF Sbjct: 126 DEFHERSIHADLGLALCLEAQAALRPDLKLLVMSATLDCAPLAKLLGDAPILSSEGRSFA 185 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V+ RYLP+ Q +A A LR G LL FLPG EI+ VQ +L + D ++ Sbjct: 186 VDLRYLPVTNRQPLAGQMAGAIRLALRDNPGDLLAFLPGSSEIRAVQRELDGSV--DGMI 243 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 CPLYG L Q++AI P R+VVLATNIAETSLTI G+R+VVD R +FDP T Sbjct: 244 CPLYGDLPFEQQQQAIQ--PGTRRRVVLATNIAETSLTINGVRIVVDSGLTRRLQFDPAT 301 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL RL+T R S+AS QR GRAGR PG+ L ++ + + PE+L +DL+ L++ Sbjct: 302 GLERLMTVRASRASALQRTGRAGRTGPGVCYRLYGEQSFQAMTPFTPPEMLTADLAPLVL 361 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLA 421 EL WG + P +SWLDQPP +L AA+ LLQ+LGAL+ ++ G++M L PRLA Sbjct: 362 ELAAWGAT-PDGLSWLDQPPAAHLAAAQALLQLLGALDRNGAITGLGRRMVRLPLHPRLA 420 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 +L++ + A ++AA L S A +Q QQLL+ + R Sbjct: 421 RLLIAGQELQLLPEACRLAAELSNR------------SSALTAIEQTEQQLLQLMGGRRK 468 Query: 482 EAD----SSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPL 536 ++ APLL A+ DRIARRR G +GRY LA+G GA SR E L+A Sbjct: 469 RGILPSADAVRAPLLILAWPDRIARRRPGDEGRYLLASGRGAACRN----SRAELLVALQ 524 Query: 537 LLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVK 596 + G + I + + +D+L Q PQL+ + +V WD A + A + QI + + Sbjct: 525 VDGGDG-AEGVIHQSAAITVDQLRQTVPQLITRQRSVSWDQAAARVAATEQEQIRAVVLS 583 Query: 597 VQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDES 656 + +A + +L +R +G+++L W+ A QL+ R++ A + LPE WP + D Sbjct: 584 SRQIAADDAEATA-LLLEQLRCQGVALLGWSETARQLQSRVILAGRLLPEEGWPDLSDTW 642 Query: 657 LLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIA 716 L E WL ++G+ S + L L I L+ L+ W + Q LDS +PA TVP+G RI Sbjct: 643 LSEHPEQWLANRLSGLRSQQDLGQLAILPLLQELVGWKLMQLLDSVVPAGLTVPSGRRIG 702 Query: 717 IRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAY 776 + Y + P L+V++QE+FG A +P I GR +++ LLSPA RP+ +TRDL FW+ Y Sbjct: 703 LDYTDQEGPVLSVKLQELFGLAESPLICHGRRAVLVHLLSPAGRPVAVTRDLKGFWERGY 762 Query: 777 REVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 EV+KE++GRYPKH WPDDP N T +TKK Sbjct: 763 LEVRKELRGRYPKHPWPDDPWNAVATHKTKK 793 >UniRef50_B9ZJ54 ATP-dependent helicase HrpB n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJ54_9GAMM Length = 837 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 335/833 (40%), Positives = 480/833 (57%), Gaps = 34/833 (4%) Query: 5 PVAAVLPELLT----ALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 P A L +LL AL+ +L A GAGK+T +PL LA ++I+L+PRRLA Sbjct: 9 PQARALEDLLNPLDAALESRGAAVLVAEPGAGKTTRVPLH-LAACNREDRVIVLQPRRLA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A +A L E G TVGYR+R + V TR+E+VT+G+ R IQ DP L GVG V Sbjct: 68 ARMAATYMAGQLGESAGQTVGYRVRDEQKVSERTRVELVTDGLFLRRIQGDPLLEGVGTV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVI 175 + DEFH R +A+LALA L V++ LR +L++++MSATLD++ + ++L V+ Sbjct: 128 VFDEFHLRRPEAELALAFALQVRRLLRPELRIVVMSATLDDEAVARLLAGPEADAVAVLR 187 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 + GR FPVE RY P D VA A + L E GS+L+FLPG EI+ V +L Sbjct: 188 ARGRQFPVEVRYAPTAKDAPLADGVAQAVRDALAVEPGSILVFLPGEREIREVAARLGEG 247 Query: 236 IGSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + + + PL+G LS +Q +A+ PAP G RKVVLAT+IAETSLTIEG+R+V+D Sbjct: 248 VDTPAGPARIAPLFGRLSAQEQARAVRPAPAGERKVVLATDIAETSLTIEGVRVVIDTGL 307 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R RFD TGL+RL+T+ S+A+ QRAGRAGR E G+++ L ++ + P + Sbjct: 308 SREPRFDAATGLSRLVTRPASKAAAEQRAGRAGRTESGVAIRLWSRADEVARPDYATPGM 367 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 Q DL L +EL WG + A++ WL+ PP L +A+ +L LGA++ + R++ GQ + Sbjct: 368 QQVDLLPLALELAGWGEA-VAELDWLEPPPAQGLASAQAVLAELGAVDADGRVTGHGQAL 426 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS---DLGVAFSRNQPAWQQR 468 L PRLA ML+ + A A ++A +EEP G +LG R + + + Sbjct: 427 LRLPAHPRLAHMLLRGRERGLARLACELAVAVEEPGVAGPEPPLELGARLERARRSGGRA 486 Query: 469 SQQLLKRL------------NVRGGEADSSLIAPLLAGAFADRIARRRGQD-GRYQLANG 515 L+RL +SS + L A A+ +RIARRRG+ GR+ + NG Sbjct: 487 WPSGLRRLEQALARVGGRPVGTEAVLDESSALGVLAALAWPERIARRRGEAAGRFVMGNG 546 Query: 516 MGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEW 575 GA L + L+ ++L+A + A +ARI A+ +D+ L Q P+L + +W Sbjct: 547 RGAWLPERERLAHTDYLVA--VDCTDADREARIRCAVALDLAALEQEAPELFHRETRCDW 604 Query: 576 DDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRL 635 + L+ R +IG L V+ Q +A +R +GL++L W A QLR Sbjct: 605 VEDGARLENARVRRIGTLVVERQMVALDDPAATIPRWCERLRREGLALLPWDDTATQLRA 664 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGM 695 R+ + +PE +P + D +LL ALE WL P++ G+ R L+ LD+ LR LDW Sbjct: 665 RIQLLHEAMPEGGFPDLRDTALLRALEDWLGPYLAGITRRRDLERLDLAAILRARLDWDH 724 Query: 696 QQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755 QQ+L+ E PA VP+GS I Y +D PP LAV++QE+FG P +A GR+ LVL LL Sbjct: 725 QQQLEREAPARIEVPSGSAHRIDYTQD-PPVLAVKLQELFGLGETPRVAGGRMALVLHLL 783 Query: 756 SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 SPA+RP+Q+T+DL FW+ Y +V++E+KGRYPKH WP+DP N TR TK+ Sbjct: 784 SPARRPVQVTQDLKSFWENGYPDVRRELKGRYPKHPWPEDPWNAPATRHTKRR 836 >UniRef50_Q1ZIP8 Hypothetical ATP-dependent helicase HrpB n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZIP8_9GAMM Length = 826 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 359/825 (43%), Positives = 495/825 (60%), Gaps = 20/825 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MSSLP+ +VL E+ ++L APQV+L AP GAGKST+LP +L + GKII+LEPRRLA Sbjct: 1 MSSLPIDSVLSEIKSSLSAAPQVILQAPPGAGKSTFLPFMMLKNKWFTGKIIMLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 +N+A +A L +EK G+ VGYRMR ++ V NT+LE+VTEGVL++MIQ+D ELSGV L+ Sbjct: 61 TKNIAYYIASLFSEKVGERVGYRMRGESHVSKNTQLEIVTEGVLSKMIQQDAELSGVDLL 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHER+LQ DLALAL LD+Q GLRDDLK+LIMSATLDN LQ+ LP A V S+GR Sbjct: 121 IFDEFHERNLQGDLALALALDLQAGLRDDLKILIMSATLDNSHLQKKLPNALCVSSQGRG 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +P+ + ++ +++ G +L+F+ G+ EI++ QL + V Sbjct: 181 YPITMYHYGFNTSANLMVSLIGLIKRAYKEQKGDILVFVAGIKEIKQCTTQLNVFFENAV 240 Query: 241 ---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 L+ PLYGALSL Q++A+ A G RK+V+ATNIAETSLTI GI +VVD QER A Sbjct: 241 EIPLIAPLYGALSLQVQQQAMQIAKNGQRKIVIATNIAETSLTIAGITVVVDSGQERSAI 300 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + ++G+T+L TQ +SQAS TQRAGRAGR++ G L + E AQ I +SDL Sbjct: 301 YQAKSGVTKLQTQMISQASATQRAGRAGRVQAGYCYRLWSAEVL--LPAQKTLPIQRSDL 358 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 + LL+E+L WG SD Q+ ++DQP NL A+ LL GAL+ +L+A G+ M +G Sbjct: 359 TSLLLEILYWGVSDAEQLPFIDQPNRSNLAQARTLLTTFGALDASNQLTAYGRAMIDMGT 418 Query: 417 DPRLAAMLVSAKN-------DDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS 469 +PR A +L+ AK + + A L E D+ A + +QR Sbjct: 419 EPRYAHLLLQAKRLHEAHYCEGILELGCLLVAQL-ESNEPSVDDISEAILQPSYLVKQRQ 477 Query: 470 QQLLKRLNVRGGEADSSL--IAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALS 527 + L KRL +R +SL LLA AF DRIA R G Y L+NG+GA L A+ +L Sbjct: 478 KALFKRLKLRATHTPASLHACGLLLAFAFPDRIALARDNAGCYLLSNGIGAQLSAHSSLI 537 Query: 528 RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRR 587 + L+ L ++ ++RI A +++ +L Q + + W + L A + Sbjct: 538 NQKMLVVADLGLLGSARNSRIFSACSINLCDLENNISAYFSQKNEIYWQLSNKRLIAEKC 597 Query: 588 LQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 IG+L + + L S + A+L GI+ GLS L W+A+ EQL RL A +Y Sbjct: 598 TYIGKLLIHKKALRDLSAQQKSDALLCGIKKAGLSALTWSAQNEQLLCRLQYAHAQYAKY 657 Query: 648 D----WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSEL 703 + E+LL L+ WL P+++ + L LD+ AL L+W + ++ Sbjct: 658 GSHNAFVDFSKETLLNTLDEWLGPYLSALSKPDQLARLDLQGALLARLNWATLAQFKTDF 717 Query: 704 PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQ 763 P H V TGS I+I Y E P L+VRMQE+FG+ +P I GR+ L L LLSPA+R LQ Sbjct: 718 PTHMRVVTGSNISIEYRETQNPLLSVRMQELFGQKDSPCIFSGRITLQLALLSPARRALQ 777 Query: 764 ITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 +T+DL+ FW GAY +V+KEM+GRYPKH WPDDP PT+RTKK Sbjct: 778 LTQDLASFWAGAYVDVKKEMRGRYPKHYWPDDPQLAIPTKRTKKN 822 >UniRef50_C5S692 ATP-dependent helicase HrpB n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S692_CHRVI Length = 856 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 343/842 (40%), Positives = 492/842 (58%), Gaps = 45/842 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 + LP+ +L +L AL +L APTG+GKST +PL LL P + G +I++L+PRR Sbjct: 4 LDPLPIDVILDDLRAALRQGHG-VLHAPTGSGKSTGVPLALLDEPWLTGQRILMLQPRRP 62 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A R+A+ L E G+ VGY++R + +GP TR+EVVTEG+LTR +Q DP L GVGL Sbjct: 63 AARMTAARMADRLGEPLGEQVGYQIRFERRIGPRTRIEVVTEGILTRRLQSDPTLDGVGL 122 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHER L +DL LAL LD +GLR DL+LL+MSATL+ + + ++L AP++ +EGR Sbjct: 123 VIFDEFHERGLPSDLGLALTLDSARGLRPDLRLLVMSATLEAEPVAELLGGAPILRAEGR 182 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 SFPVE RY A+ + L E+G +L FLPG EI+R +E L +++GS+ Sbjct: 183 SFPVEIRYAERTPDSDPVRALVAGARQALADETGDILAFLPGAREIERAREALGAQVGSE 242 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V + PL+GALS +Q +A+ P G R+++LAT++AETSLTIEG+R+V+D R RFD Sbjct: 243 VEILPLHGALSSAEQDRALRPDGSGRRRLILATDLAETSLTIEGVRVVLDSGLTRKPRFD 302 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +GLTRL+T+ + +AS QRAGRAGRL PG+ L + Q + PEIL+SDL+ Sbjct: 303 PGSGLTRLVTESIPRASADQRAGRAGRLAPGVCRRLWTRAQEVGRPDRRTPEILESDLAP 362 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDP 418 L +EL WG DPA++SWLD PP A LL+ LGAL+ + ++ G+ +A L P Sbjct: 363 LALELALWGVKDPAELSWLDPPPAPAWNQALELLRTLGALDRRDSITPLGRALAELPVHP 422 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILE-------EPPRMGNSDLGVAFSRNQPAWQQ---- 467 RL ML+ A + E TAA + A++ EP R +DLG+ + A ++ Sbjct: 423 RLGVMLLGAAPE-ERQTAADLCALISERDPFLPEPGRARPADLGLRLEALRAARERRGTP 481 Query: 468 ------------RSQQLLKRLNVRGGEADSS---------------LIAPLLAGAFADRI 500 R+ + L RL R E + + LLA A+ DR+ Sbjct: 482 AGVERRRLEAIERAARQLLRLAERAAETAPAPASLDQALSPTRLQRVPGALLALAYPDRV 541 Query: 501 ARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDEL 559 A+RR G D RY LA G GA L +DAL+ H +L+ + + D RI AL + DEL Sbjct: 542 AQRRAGADERYLLATGTGAELPRDDALAIHPYLVVAAID--ARGRDGRIQSALPISEDEL 599 Query: 560 VQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDK 619 + ++ V WDD + + ++G + ++ +P+A ED+ +L IR+ Sbjct: 600 RTELAECLESRREVFWDDERAAVACRAITRMGSIVLESRPVALGPEDDAGTYLLAHIREH 659 Query: 620 GLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLK 679 L+W+ A QL+ R+ A ++ P DWP + D +L L+ WL P +TG L ++ Sbjct: 660 FGDALDWSDSARQLQARVALARRYDPAGDWPDLSDTALREQLDDWLAPWITGKSRLSDVR 719 Query: 680 SLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAT 739 LD+ L L W +Q LD ++P + P G+ I Y P LA +QE FG + Sbjct: 720 RLDLSAILLDRLSWEQRQWLDQQVPRTFVTPAGNNRPIDYVSGETPILAAPLQEFFGLSD 779 Query: 740 NPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANT 799 P + +GRVP++L LLSPA+RP+Q+T+DL+ FW Y EV+KE++GRYPKH WP+DP Sbjct: 780 TPRLCRGRVPVLLHLLSPARRPMQVTQDLAGFWARGYAEVRKELRGRYPKHHWPEDPTQA 839 Query: 800 AP 801 Sbjct: 840 QA 841 >UniRef50_A0L6K8 ATP-dependent helicase HrpB n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6K8_MAGSM Length = 829 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 361/833 (43%), Positives = 480/833 (57%), Gaps = 33/833 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 LP+ A L L AL P V+LSAP G+GK+T +PL LL P + G +I++LEPRRLA Sbjct: 5 PDLPIVATLQPLQAALLRHPNVILSAPPGSGKTTVVPLALLDAPWLAGERILMLEPRRLA 64 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+AELL E G+ VGY++R + VGPNTR+EVVTEG+LTR +Q DP L GVG + Sbjct: 65 ARAAASRMAELLQEPVGERVGYQIRFERKVGPNTRVEVVTEGMLTRRLQSDPALQGVGAI 124 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSLQ DL L Q LRDDL+LL+MSATL++ RL ++L +AP++ GRS Sbjct: 125 LFDEFHERSLQGDLG-LALALELQQLRDDLRLLVMSATLESQRLAKLLGDAPIIEGHGRS 183 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PV+ RY P + + V + L QE G LL FLPG GEI+RV+ L S + DV Sbjct: 184 YPVQVRYASQP-YAHVVEGVVQTIRQALAQERGDLLAFLPGAGEIRRVEAALRSGLPDDV 242 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L PLYG L + Q +A+ P +G R+V+LAT+IAETSLTI GIR+VVD + RF Sbjct: 243 TLLPLYGELGMQAQDRAVRPWLEGGRRVILATDIAETSLTIPGIRVVVDGGLCKRPRFHA 302 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 +GLTRL R+S AS QRAGRAGRLEPG+ + + Q + EI ++DL+ L Sbjct: 303 SSGLTRLERLRISDASAQQRAGRAGRLEPGVCYRIWPESQQRMLQPATPAEIREADLAPL 362 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 L+EL WG +DP QMSWLD PP + LL LGA++ ++ G++MA L PR Sbjct: 363 LLELALWGVADPTQMSWLDPPPEGAVAQGWALLVALGAVDEARHITPLGRQMAQLPLHPR 422 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN-QPAWQQRSQ-------- 470 LA M+ A A A +AA+L E + V Q Q R Q Sbjct: 423 LAHMVCMAPEPAAQAMACDVAALLSERDPLKGGARQVDLHLRWQSVAQFRRQGSAGPGVD 482 Query: 471 ------------QLLKRLNVRGGEADSSLIAPLLAGAFADRIAR-RRGQDGRYQLANGMG 517 QL L V + + LLA A+ DR+A+ R GQ GRY LA+G G Sbjct: 483 AASLQRIVRGADQLRHLLGVSRQQVAHGDLGLLLAAAYPDRVAQLRPGQRGRYLLASGRG 542 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 LD D LS L+ L G A + R LA+ + + + P V W D Sbjct: 543 VRLDEMDPLSGEPLLVVAALDAGEA--EGRAYLAVSLAQEAFMALQPPA--WQAQVVWSD 598 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELH-QAMLNGIRDKGLSVLNWTAEAEQLRLR 636 Q + A R+ G L ++ QPL + + AML G+R GL+VL WT A Q + R Sbjct: 599 QQQRVVAERQRCFGALVLERQPLHGEAPEAAVLAAMLVGVRRMGLAVLPWTPAAMQYQAR 658 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 + A+ E WP +++ LL LE WL P + GV+ L+ L++ + L+ L W Q Sbjct: 659 VQLMARL--ESGWPLLEEAVLLEQLEQWLAPFLRGVNRRAQLERLNMLEILQSQLTWSQQ 716 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 Q L+ LP HY VP+GSRI + Y P LAVR+QE+FG A +P + QGRVP+ L LL+ Sbjct: 717 QSLEQALPTHYEVPSGSRIKLDYTAGAQPVLAVRIQELFGLAESPCLGQGRVPVTLHLLN 776 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 PAQRP+Q+T DL FW+ + +V+KE++GRYPKH WP++P T R K S Sbjct: 777 PAQRPVQVTSDLRGFWQTTWPQVRKELRGRYPKHHWPENPWQAQATARAKPRS 829 >UniRef50_A8IJC9 ATP-dependent helicase n=43 Tax=cellular organisms RepID=A8IJC9_AZOC5 Length = 852 Score = 802 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 356/823 (43%), Positives = 491/823 (59%), Gaps = 19/823 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 + LP+ LP L L +L AP GAGK+T +PL LL P + G KI++LEPRRLA Sbjct: 31 TRLPIDDALPALTATLRDHVAAVLVAPPGAGKTTRVPLALLDEPWVKGGKILVLEPRRLA 90 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A+ L EK G+TVGYR+R ++ V TR+EV+TEGV TRM+ DPELSG+ V Sbjct: 91 ARAAAHRMAQTLKEKVGETVGYRVRLRSEVSRRTRIEVITEGVFTRMVLDDPELSGIAAV 150 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISE 177 + DE+HERSL ADL LAL L+ Q+GLRDDL+LL MSATLD R+ +L + APVV SE Sbjct: 151 LFDEYHERSLDADLGLALALETQRGLRDDLRLLAMSATLDGARVAALLGDGAPAPVVESE 210 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI- 236 GR++PV+ RYL + V A + L E GS+L FLPG EI+R Q L + + Sbjct: 211 GRAYPVDTRYLGRDPRAPIERQVVDAVLKALSAERGSVLAFLPGAAEIRRTQTHLLADVR 270 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 D + L+GAL +Q +A+LPAP G RKVVLAT+IAETSLTIEG+R+VVDC RV Sbjct: 271 DRDTDIVALFGALDAAEQDRAVLPAPPGKRKVVLATSIAETSLTIEGVRVVVDCGLARVP 330 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 RF+P GLTRL T RVS+A+ QR GRAGR EPG+ L + + + A + PEIL +D Sbjct: 331 RFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWGEGETQSLPAFATPEILAAD 390 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALG 415 LSGL+++L G DP + +LD PP+ + AK LL++L A++ + ++ G +MA L Sbjct: 391 LSGLVLDLASAGVRDPRALPFLDPPPLPAVTEAKNLLRVLDAIDADGAVTPLGARMARLP 450 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKR 475 PRLA M+V + +AA IAA+L E G+S + + R + +R Sbjct: 451 LPPRLAHMVVRGSDLGAGESAADIAALLTERGLGGDSPDLAHRLEDFRRERSRRAEDARR 510 Query: 476 LNVRGGE----------ADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDA 525 L R E ++ A LLA A+ DR+A+ RG R LANG GA++D + Sbjct: 511 LAGRWAELARESHPPKAGETPSPAALLALAYPDRVAKARGDGTRILLANGRGAVVDPASS 570 Query: 526 LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW 585 L+R +L + + AR+ LA + +E+ + + V +D A +++A Sbjct: 571 LARAPYLAVAEI--SGRADAARVQLAAAISGEEIERLFADAITAGLEVAFDPATASVRAR 628 Query: 586 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP 645 ++G LT+ +P P+ E A+ G+ D G+ L WT Q R R+ + Sbjct: 629 ETRRLGALTLADRPQPVPNTPETAAALAEGLADLGIERLPWTPALTQWRDRVRFLHQAEG 688 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 WP + D L A WL P +TG SL + + D+ AL LL + + RL++E P+ Sbjct: 689 -APWPDLSDAQLAATAAEWLAPFLTGRTSLGQVSAGDLGNALHALLPYELTHRLETEAPS 747 Query: 706 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT 765 H+T PTGS + I Y + P L VR+QE+FG +P IA G+VPL L LLSPA RP+Q+T Sbjct: 748 HFTAPTGSNLPIDYAAEGGPLLPVRVQELFGLTRHPAIAGGKVPLTLALLSPAHRPIQVT 807 Query: 766 RDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 +DL FW+G++R+V+ EM+GRYPKH WP+DPAN PT R K Sbjct: 808 KDLPQFWQGSWRDVRAEMRGRYPKHPWPEDPANAPPTNRAKPR 850 >UniRef50_Q6ALG3 Related to ATP-dependent helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6ALG3_DESPS Length = 840 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 311/836 (37%), Positives = 451/836 (53%), Gaps = 36/836 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 +S+ P++AVL L +L +L +PTG+GK+T P+ LL ++GK I +LEPRR+ Sbjct: 10 LSNYPISAVLDSLQESLAA-GHTVLKSPTGSGKTTIAPITLLGQDWLHGKKIYMLEPRRV 68 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A R++ LL E+ G TVGY R NT++ +VTEGV + IQ+D EL+ +GL Sbjct: 69 AARAAAYRMSSLLGERIGQTVGYITRYSKEFSANTKIFIVTEGVFLKTIQKDQELTDIGL 128 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE+HERSL L LR+D +LL+MSATLD+++L ++L A +V S G+ Sbjct: 129 VIFDEYHERSL-IADLCLALCLDLATLREDFRLLVMSATLDSEKLAKLLDNARIVESAGK 187 Query: 180 SFPVERRYLPLPAH-QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 SFPV Y P +V A + L G +L FLPG+ +I+ V+ +L S IG+ Sbjct: 188 SFPVSVIYQPPATEFTPLSMSVTSAISYALANYEGDILTFLPGIADIKSVERELES-IGN 246 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 +V + PLYG L + Q K + P R+VVLAT +AETSLT++G+R +VD + + Sbjct: 247 NVKILPLYGDLPIEQQDKILAPKQNRQRRVVLATPVAETSLTVDGVRCIVDSGLHKHPVY 306 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 +P+ GLT L+T R+S+AS QR GRAGR G+ + L ++ A + PEI +DL+ Sbjct: 307 NPKNGLTSLVTSRISRASAEQRRGRAGRQNSGMCIRLWDEKIHHGLLAFTPPEICNADLT 366 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGND 417 L++EL WG +D Q+ WLD P A +LL L AL + ++ G+K+ Sbjct: 367 SLVLELAHWGVNDAKQLKWLDPPGKGAWEKAVKLLTQLSALNKKGEITDIGRKLRKFPLH 426 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ----------- 466 PRL+ ML+ A T +A IL E D G+ A Sbjct: 427 PRLSYMLLKATELSLGLTGCYLAGILSERDIFQGHDNGIDIRDRIKALSSLSNRSSSYSG 486 Query: 467 -------------QRSQQLLKRLNVRGGEA-DSSLIAPLLAGAFADRIARRRGQ-DGRYQ 511 Q+ +Q K L +R E +S LL + DRIA R Q D +Q Sbjct: 487 RANLNTQVCKQILQQVEQWRKTLGIRWAETINSEETGNLLCFCYPDRIAIGRSQQDSTFQ 546 Query: 512 LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 LANG A + A D+L+ + ++A + + +I LA + EL + P L+ SD Sbjct: 547 LANGRQARISAQDSLNNSQIIVAAKVDVRGG--NGKIFLAAPTTLMELEKNHPDLISTSD 604 Query: 572 TVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 + WD + ++A R IG + +P++ +D +L GI++ G L W+ + Sbjct: 605 HIRWDKKELAVQARRETFIGLAKISSKPISLQDKDVALTLLLKGIQETGSEALPWSKSSR 664 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 +L+ RL + +W DE+L+ L TWL P G ++ L+ +D AL L Sbjct: 665 ELQARLQTLFNYDQN-NWQDFSDEALIQDL-TWLEPFCYGFTKVQQLRDIDFQSALLAKL 722 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 + QQ L + P H VP+GS I I YH + P LAVR+QE+FG PTI G +PL Sbjct: 723 SYNKQQLLQTLAPTHTKVPSGSNIKITYHLGDEPRLAVRLQEVFGMCDTPTICGGSLPLT 782 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 L LLSPA+R +QIT+DL FW+ Y E++KE+ GRYPKH WPD+P T RTK+ Sbjct: 783 LHLLSPARRSMQITKDLKSFWQRTYPEIKKELAGRYPKHYWPDNPLEAQATSRTKR 838 >UniRef50_Q3BYY2 ATP-dependent helicase HrpB n=20 Tax=Bacteria RepID=Q3BYY2_XANC5 Length = 866 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 337/836 (40%), Positives = 461/836 (55%), Gaps = 37/836 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLA 60 + P++ +LP++ +L P+++L AP GAGK+T +PL LL P + G+ I++LEPRR+A Sbjct: 37 PAFPISPLLPQIRDSLAAHPRLVLEAPPGAGKTTQVPLALLDAPWLAGRRIVMLEPRRVA 96 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+ AQ +A L E G+TVGYR+R +N TR+EVVTEG+LTR+IQ DP L VG + Sbjct: 97 ARSAAQFMARQLGEPVGETVGYRIRFENKTSARTRIEVVTEGILTRLIQDDPMLESVGAL 156 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHER L DL LAL LDVQ +RDDL+++ MSATLD +RL L EAP + S GRS Sbjct: 157 LFDEFHERHLAGDLGLALALDVQAQVRDDLRIVAMSATLDGERLAGFL-EAPRLSSAGRS 215 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FPVE + P + + A L G +L+FLPG EI RV L + V Sbjct: 216 FPVEIAHFPARRDEALEPQTRRAVEHALSTHPGDVLVFLPGQREIARVHRALQDALDPAV 275 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LS+ Q + + P PQG R+VVLATN+AE+S+T+ G+R+V+D R +DP Sbjct: 276 QVLPLHGELSVEAQSQVLQPDPQGRRRVVLATNVAESSVTLPGVRVVIDSGLAREPHYDP 335 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 +G +RL ++QAS QRAGRAGR+ G + L + Q R Q EI Q +L+GL Sbjct: 336 NSGFSRLDVAAIAQASAEQRAGRAGRVASGWAYRLWPQSQ--RLEPQRRAEITQVELAGL 393 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPR 419 +EL WG S + ++D PP L AA+ LL+ LGAL ++ G++M ALG PR Sbjct: 394 ALELAAWGSS---ALRFVDAPPSGALAAARELLRRLGALTASGGITTLGRRMLALGTHPR 450 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLG------------------VAFSRN 461 LAAML A + A A +AA+LE + G A Sbjct: 451 LAAMLAQAGDAPRVALACDLAALLEARDPLRQGGDGLAARWRALAAFRQGRSAADADRGG 510 Query: 462 QPAWQQRSQQLLKRLNVRGGEA---DSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMG 517 A ++Q +RL ++ + LL+ AF DRIA R D RY LANG Sbjct: 511 LAAIDSAAKQWRRRLRCDSAPPSSVEAHALGDLLSHAFPDRIAARHPADPLRYLLANGRS 570 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 A L + L WL+A L + DA +L A VD L + P+ Q D V+WD Sbjct: 571 ARLFDHSDLRGEPWLVASELRYEAK--DALLLRAAPVDEAYLRRSLPERFVQQDVVQWDA 628 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 + L A R+ ++ + +P + A+ + +R GL L WT +Q R R+ Sbjct: 629 DKRALVARRQSSFDRIVLDSRPAGRVDPAHAAAALTDAVRQLGLDALPWTENLQQWRARV 688 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 +W+PE P + D +LL L+TWL P G L L + +AL+ L W +Q Sbjct: 689 QSLQRWMPELALPDLSDATLLETLDTWLRPAFAGKTRLDALDEASLGEALKSALPWERRQ 748 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDN-----PPALAVRMQEMFGEATNPTIAQGRVPLVL 752 +D P +VP+G I Y D+ PP LAV++QE+FG A P IA GR+ L L Sbjct: 749 WIDRHAPTRISVPSGMERPISYALDHAGQPLPPVLAVKLQELFGLAETPRIADGRIRLTL 808 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LLSP RPLQ+T+DL FW Y +V+KEMKGRYP+H WPDDP A T R K Sbjct: 809 HLLSPGGRPLQVTQDLKSFWANTYPDVKKEMKGRYPRHPWPDDPWTAAATHRAKPR 864 >UniRef50_Q0VPK1 HrpB protein n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VPK1_ALCBS Length = 814 Score = 799 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 321/814 (39%), Positives = 459/814 (56%), Gaps = 18/814 (2%) Query: 5 PVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAARN 63 PV + LL AL + +L AP GAGKST +PL LL G NGKI++LEPRR+AAR+ Sbjct: 6 PVDNAIEPLLKALKRYNRTILEAPPGAGKSTRVPLALLDSEWGANGKILMLEPRRVAARS 65 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 VA +A E G +VGYR R V +TRLEVVTEG+LTRM+ +DPEL GV LVI D Sbjct: 66 VATFMASQRGEPVGRSVGYRTRTDTQVSAHTRLEVVTEGILTRMLLKDPELPGVSLVIFD 125 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERSL ADL LAL+L+ + R DL LL+MSATLD L + L APV+ SEG+S+PV Sbjct: 126 EFHERSLNADLGLALMLETCEAFRLDLGLLVMSATLDCGPL-EHLLGAPVIRSEGQSYPV 184 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 Y+P+ A + + D A ++ +G +L+FLPG G+I+RV QL G + Sbjct: 185 TVSYVPVSAREDWRDHCAEQVMALV-DTAGVMLVFLPGQGDIRRVASQLNQ-CGCTTPVT 242 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 LYG L L+ Q++ + A R +VL TN+AETSLTIEG+ V+D R +DP Sbjct: 243 SLYGGLPLDKQQQVLALAATEPRLIVLTTNVAETSLTIEGVTHVIDSGFAREPVYDPARH 302 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 +RL+T+R+S+A+ QR+GRAGRL PG S+ L K E A PEI + L L+++ Sbjct: 303 RSRLVTRRISEANARQRSGRAGRLGPGHSVRLWGKS--EVLARYQLPEIQRVGLDRLVLD 360 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAA 422 L +WG +P QM WLD PP +A + LQ GAL+ L+++G+ +A L DP LA+ Sbjct: 361 LARWGSREPQQMPWLDAPPQAAWNSAVQRLQSAGALDENGSLTSRGEAIAQLPVDPSLAS 420 Query: 423 MLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFS----RNQPAWQQRSQQLLKRLNV 478 +L+ A A +AA++ A+L E + + + NQP +RL + Sbjct: 421 LLIVAGEAGLAESAAQLVALLSERDILPGEGVDLRRRLEALENQPQRFGAVLAEARRLKI 480 Query: 479 RGGEADSSL---IAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSRHEWLIA 534 G ++ + LLA + +I+RRR YQ+A+G G L +D+L EWL+ Sbjct: 481 NNGHSEQRWRDAMGTLLASVYPLQISRRRSGGRGRYQMADGPGLFLHDSDSLQGTEWLLV 540 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLT 594 + DARI LA + DE+ Q + V WD + + R +G L Sbjct: 541 --MDTDGQPKDARIRLAWPLTEDEVEAAQEQHGVWREQVGWDAERQRVSGRRERMLGNLV 598 Query: 595 VKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 ++ Q L ++ +L GIR GL+VL W Q + R++ A P+ WP V + Sbjct: 599 LQSQTLTSLDSEQRITGLLAGIRQLGLAVLPWDESWRQWQARVVRLACVQPDGHWPDVSE 658 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSR 714 LL+ LE WL P++ G+ S+ LK L + AL LL Q++L ++P +PTG Sbjct: 659 AGLLSDLEQWLAPYLAGMRSVVDLKKLPLGVALSSLLTLEQQRQLKQDMPESVVIPTGRS 718 Query: 715 IAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKG 774 + + Y + LA ++QE+FG T P +A G + + + LL+PA RP IT +L+ FW Sbjct: 719 VRLDYTGEQ-VVLAAKLQELFGLKTLPALAGGALSITVHLLTPAGRPAAITDNLARFWAE 777 Query: 775 AYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 Y V+K+++GRYPKH WP++P + T TK+ Sbjct: 778 NYAAVRKDLRGRYPKHPWPENPLDAQATGLTKRR 811 >UniRef50_B5JVW3 ATP-dependent helicase HrpB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVW3_9GAMM Length = 848 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 361/849 (42%), Positives = 502/849 (59%), Gaps = 49/849 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 +SSLP+ AVL ++ AL + +L AP GAGK+T +PL LL H G KI++LEPRRL Sbjct: 2 LSSLPIHAVLDDVSNALTQHNRAILQAPPGAGKTTAVPLALLDHALFQGQKIVVLEPRRL 61 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+AELL E+ GDTVGYR+R V TR+EVVTEG+LTRM+Q+DPEL G+ Sbjct: 62 AARRAAERMAELLGERVGDTVGYRIRLDTKVSARTRIEVVTEGILTRMLQKDPELLGIAA 121 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP-----EAPVV 174 V+ DEFHERSLQADLALA L QQ LR+DL+LLIMSATLD +QQ+L P++ Sbjct: 122 VLFDEFHERSLQADLALAFCLQSQQLLREDLRLLIMSATLDGAGIQQLLSRIDGSHTPMI 181 Query: 175 ISEGRSFPVERRYL-----PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 SEGRSF VE RYL + + D +A T + L +E GS L+F+PG GEIQ++ Sbjct: 182 TSEGRSFAVETRYLTKAPPAAREKRAWLDGLAQLTQKALAEEHGSALVFVPGQGEIQQLA 241 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 ++L +R+ D + PLYGALS +Q +AI PAP+G RKVVLATNIAETSLTIEGIR+VVD Sbjct: 242 QRLQTRVDEDTQIAPLYGALSKAEQDRAIAPAPKGQRKVVLATNIAETSLTIEGIRIVVD 301 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 +R ARF P TG++ L+T+ +++ + QR GRAGRLE G+ + AA S Sbjct: 302 GGLQRRARFAPNTGMSGLVTEAIARDAADQRRGRAGRLEAGVCYRYWCEND--TRAAHSP 359 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 EI SDL+ L+E+ QWG +D +++ WL PP + + LL LGA++ + R++A G Sbjct: 360 AEIEHSDLAPALLEIAQWGITDLSELYWLSPPPEQQVKRGRELLLSLGAIDEQLRITAHG 419 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG-----NSDLGVAFSRNQP 463 + LG PRL ML+ ++ TA +AA+LEE + ++DL + Sbjct: 420 SDLLQLGLHPRLGHMLLHSRYWQAEHTACTLAALLEERDPLPKEKSQSADLQRRLDAVKR 479 Query: 464 -----------AWQQRSQQLLKRLNVRGGEAD----SSLIAPLLAGAFADRIAR-RRGQD 507 Q+ Q L+RL + G D S + LLA A+ DRIA+ R ++ Sbjct: 480 SSASPAIKAILQRSQQLAQRLRRLALTGDATDTIDHSEQLGLLLALAYPDRIAQNRHDRE 539 Query: 508 GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLV 567 R+ L+ G GA ++D L+ ++L+ L DARI A + + + L+ Sbjct: 540 RRFLLSGGKGAFFISDDPLAAQDYLVISDLD--GQRKDARIFRAASLSKNAIETHLSTLI 597 Query: 568 QQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWT 627 + + V WD+AQ + A R ++G L + Q + +P++ +A+L G+R +G L Sbjct: 598 RHEERVSWDEAQQRVSAERIARLGALVLARQNI-RPNQALTQRALLAGLRQRGE--LPLN 654 Query: 628 AEAEQLRLRLLCAAKWLPEY--------DWPAVDDESLLAALETWLLPHMTGVHSLRGLK 679 A A+ L+ R++ + + P + + LL LE WLLP + +SL L Sbjct: 655 AAAQSLQARVMFLQRQQNQSNHPLGIRAPLPDLSNAHLLDTLEEWLLPFLGHQNSLDKLA 714 Query: 680 SLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAT 739 LD L G +DW QQ +D P VP+GS I I Y ++PP LAVR+QE+FG Sbjct: 715 QLDWKSLLLGQIDWEQQQAIDQLAPETLVVPSGSHIRIDYS-EHPPVLAVRLQELFGLNN 773 Query: 740 NPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANT 799 P IA G PL++ LLSPAQRP+Q+T+DL FWK Y EV+KE++ +Y KH WP+DP Sbjct: 774 TPAIANGHCPLMIHLLSPAQRPVQVTQDLPSFWKNTYPEVRKELRIKYQKHYWPEDPTQA 833 Query: 800 APTRRTKKY 808 TR TKK Sbjct: 834 QATRHTKKR 842 >UniRef50_Q72BU1 ATP-dependent helicase HrpB n=3 Tax=Desulfovibrio vulgaris RepID=Q72BU1_DESVH Length = 847 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 346/832 (41%), Positives = 477/832 (57%), Gaps = 34/832 (4%) Query: 8 AVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAARNVAQ 66 + LP L AL A + + AP GAGK+T +PL LL P + + I++LEPRRLAAR A+ Sbjct: 18 SALPRLTDALLSAGRCVFVAPPGAGKTTVVPLHLLDAPWLRSRRIVMLEPRRLAARAAAR 77 Query: 67 RLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFH 126 +A LL E+ G+TVGYRMR + VGP TR+EVVTEGVL RM+ DP L GLVI DE+H Sbjct: 78 FMARLLGEQVGETVGYRMRLDSRVGPRTRMEVVTEGVLGRMLHDDPTLEEYGLVIFDEYH 137 Query: 127 ERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERR 186 ERSLQADL LAL LDV LRDDL+LL MSATLD L ++ PV+ EGR +PVE R Sbjct: 138 ERSLQADLGLALCLDVADALRDDLRLLAMSATLDAAPLGSLMGGCPVIECEGRQWPVEVR 197 Query: 187 YLPLPAH----QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 Y P F+D VA L + G +L+FLPG GEI+R +L V + Sbjct: 198 YAPPVNRAGYPSSFEDNVAACVHRALAETEGDVLVFLPGGGEIRRTARRLEGLDAHGVGV 257 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 LYG L+ Q A+ P G RKVVLAT +AETSLTIEG+R+VVD R +RFDP++ Sbjct: 258 HMLYGDLAPALQDAALAPDVSGARKVVLATALAETSLTIEGVRVVVDGGLARFSRFDPQS 317 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 G++RL+T+R+S A TQR GRAGR PG+ L + + + PE+L +DL+ L++ Sbjct: 318 GMSRLVTERISLAGATQRVGRAGRTGPGVCYRLWHEGETASLRPFARPEVLDADLAPLML 377 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLA 421 +L WG DP+++ WLD PP VN+ A+ LLQ LGA++ R++ G+ M AL PRLA Sbjct: 378 QLSAWGVLDPSKLRWLDAPPEVNVNQARILLQSLGAIDASGRITGHGKSMNALPLHPRLA 437 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPP---RMGNSDLGVAFSRNQPAWQQRSQQLLK---- 474 M++SA A+ A +A +LE+ RM D+ + + + + + Sbjct: 438 HMVLSACRSGSASLACVLACLLEQRGVAERMPGCDIRPSVEDAVRRMRHKPRGASREGWE 497 Query: 475 ----------------RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGA 518 RL+ +D + LL AF DR+A G +G ++L+ G GA Sbjct: 498 VRLASSVDRIAALAGVRLDAGRALSDVARCGVLLGFAFPDRVAMNTG-EGTFRLSCGRGA 556 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 + A+DAL+R +L+A L ARI A + +E+ + + V WDD Sbjct: 557 AVPADDALAREPFLVAAELDGDVTR--ARIWRAAPLAAEEVAMLAGGAITEQREVGWDDR 614 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 QG A + G L ++ + + + L A++ GIR +GL L WT E Q + R+ Sbjct: 615 QGVAVAHVERRFGALVLERRRIDDVDDTLLAHAVMRGIRTRGLRCLPWTQELRQWQARVE 674 Query: 639 CAAKWL-PEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 + P WP V D L A LE WL+P ++G+ +D+ AL+ LL W + Sbjct: 675 LMRRHDTPGGQWPEVADTRLEAELEEWLIPFLSGIRRAEHFARIDLQSALKNLLSWEQAR 734 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 RLD+E P H VP+GSR+ + Y + P LAV++QE+FG A +P G V +V+ LLSP Sbjct: 735 RLDAEAPTHVVVPSGSRVPLDYTAEGGPVLAVKLQELFGMAESPV-VAGGVSVVVHLLSP 793 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 A RPLQ+TRDL+ FW+ Y V+ EM+GRYPKH WP+DP TR T+K + Sbjct: 794 AGRPLQVTRDLAGFWRTGYASVRAEMRGRYPKHPWPEDPLTAMATRHTRKRA 845 >UniRef50_A1SSH4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=A1SSH4_PSYIN Length = 835 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 297/837 (35%), Positives = 459/837 (54%), Gaps = 36/837 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAAR 62 LP+ +P++ L P ++L A GAGKST +PL LL P + GK IILLEPRR+A + Sbjct: 2 LPIDDFIPQIQETLSQHPALVLQAEPGAGKSTAVPLSLLGSPFLKGKKIILLEPRRVAVK 61 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 ++A LA+ L EK G VGY++R + + +T LE+VTEGVLTR +Q DPELS VGL+I Sbjct: 62 SLAFYLAKQLGEKVGQRVGYQVRNERKISADTVLEIVTEGVLTRRLQNDPELSDVGLIIF 121 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERS+ ADLAL L L+VQQ RDDL LL+MSAT+D D L L APV+ GR++P Sbjct: 122 DEFHERSIHADLALMLALEVQQAYRDDLTLLVMSATIDTDLLANYLNHAPVIKCPGRTYP 181 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 VE Y+ + + +G +L+FLPG GEI+R + ++GS+ L Sbjct: 182 VEIEYISNTQGYLDQQVMKALNTVLNETSAGDILIFLPGQGEIKRAIQLAKQQLGSNFDL 241 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYG LSL+ Q + ++V+ +TNIAETSLTIEGI V+D E+V FD ++ Sbjct: 242 LPLYGGLSLSQQELVLSKKSGSQQRVIFSTNIAETSLTIEGISTVIDSGLEKVLSFDVKS 301 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL+RL T +S+AS TQRAGRAGRL+ G ++ L ++ + + EI +DLS L++ Sbjct: 302 GLSRLETTSISKASATQRAGRAGRLQRGRAIRLYSEAKHQGLKDFQAEEITNTDLSSLVL 361 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLA 421 +L WG + A+++WL PP + A L +LG L+ + +++ QG + +G DPRLA Sbjct: 362 DLAAWGITSFAKVNWLTPPPEHHFNVACSLNCVLGLLDAQNKITKQGTRALKMGLDPRLA 421 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFS----RNQPAWQQRSQQLLKRLN 477 +ML+S ++ E A + A+L E + N+ N +++ + + +N Sbjct: 422 SMLLSCQSTLEKRIACVLGALLSERDILFNAGSSDIIERAMLFNDYLADRKALKANRNIN 481 Query: 478 VRGGEAD-------------------------SSLIAPLLAGAFADRIAR-RRGQDGRYQ 511 + E + LL A+ DR+A+ R + RY Sbjct: 482 IGVVEQVVTLAKSFAKSLGLSSLGEPVSLTELNHYAGALLLTAYPDRLAKIRSAKSNRYL 541 Query: 512 LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 LANG G L D++ WL+ + D I V I ++ + ++ Sbjct: 542 LANGRGVTLREMDSVQGELWLVV--CDCDGKNKDGNIYSCAAVSIPQIKTVLADQLTENS 599 Query: 572 TVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 D + + ++L L ++ Q L++ ++E Q + + ++ +GL+ LNWT+ Sbjct: 600 HYALDTKKEKVIGRQKLTYRALVLEEQLLSEIPDNEFAQCVADLLKQEGLAFLNWTSRCA 659 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 R+ + + D+P + + +L+ L+ WLLP++ + +++ L+ I L L Sbjct: 660 SWLARVKWLSSVM--TDFPQISETTLIEQLDNWLLPYIGRIKTIKQLRQFQIVDLLMATL 717 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 + Q L ++ Y P+G I IRY + P +++ +QEMFG+ +P +A +P+ Sbjct: 718 TFQESQTLAAQAAEFYEAPSGKSIPIRYDQQQGPTVSIILQEMFGQLDSPMLANNTIPIR 777 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ELLSPA++P+Q T DL++FW +Y +V K+M+GRYPKH WP+ P P R KK Sbjct: 778 FELLSPARKPIQTTSDLANFWCTSYFDVAKDMRGRYPKHRWPEAPLLELPGRSIKKR 834 >UniRef50_B8DNU5 ATP-dependent helicase HrpB n=2 Tax=Proteobacteria RepID=B8DNU5_DESVM Length = 917 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 371/894 (41%), Positives = 492/894 (55%), Gaps = 89/894 (9%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LPV A+LP LL L + +L AP GAGK+T +PL LLA P + G K++LLEPRRL Sbjct: 1 MPRLPVDAILPRLLGVLVDGARAVLQAPPGAGKTTRVPLALLAAPWLAGRKVVLLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A L E GDTVGYRMR VGP TR+EVVTEGVLTRM+Q DPEL+ VG Sbjct: 61 AARAAARRMAATLGEAVGDTVGYRMRLDTRVGPRTRVEVVTEGVLTRMLQADPELADVGC 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL LAL LD Q+GLR DL+L++MSATLD + +L PV+ S GR Sbjct: 121 VIFDEFHERSLHADLGLALCLDCQEGLRPDLRLVVMSATLDCGPVVALLGGCPVIESAGR 180 Query: 180 SFPVERRYLPL---------PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 +FPV+ R+LP +DAVA A L + GSLL+FLPG GEI+R E Sbjct: 181 AFPVDTRHLPPVRNWLPYETTPPGVLEDAVADAVRRALHETPGSLLVFLPGAGEIRRTAE 240 Query: 231 QLASRIGSD---VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLV 287 +LA + V + LYG L+ Q AI PAP G RKVVLAT IAETSLTI+G+R+V Sbjct: 241 RLAGLSATPHGPVAVHALYGDLAPELQDAAIAPAPPGTRKVVLATAIAETSLTIDGVRVV 300 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ 347 +D RV RFDPR+G++RL+T+RVS A QR GRAGR EPG L + + Sbjct: 301 IDAGLARVPRFDPRSGMSRLVTERVSLAGADQRRGRAGRTEPGTCWRLWREGEEAALRPF 360 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSA 406 + PEIL +DL+ LL+EL WG D + + WLD+PP NL A+ LL +LGAL+ R++ Sbjct: 361 ARPEILDADLAPLLLELALWGVPDASALRWLDEPPQANLAQARELLILLGALDGAGRITP 420 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ 466 G+++A L PRLA M+V A+ ATA +AA+LEE + ++ + A Sbjct: 421 HGRRVAVLPLHPRLAHMVVRAEELGLGATACCVAALLEERDPLRDAGADLRLRVALLAGD 480 Query: 467 QR----------------SQQLLKRL--------------NVRGGEADSSLIAPLLAGAF 496 R + + + RL G D +LA A+ Sbjct: 481 GRRTGNAGGGPMVVRLREAARQVARLAGVDIDAAAGKGKGAHPGTRPDPEATGEVLALAY 540 Query: 497 ADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDI 556 DR+A RGQ G+++LA G GA L D LSR +L + +A RI + Sbjct: 541 PDRVAEGRGQ-GQFRLACGRGAYLPPEDPLSREAFLAVGDMDGDAAR--GRIRRCAPLAR 597 Query: 557 DELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGI 616 + + + + + V WD + A R+ ++G L + P +E+ A++ GI Sbjct: 598 EHIEEAFGASIAEGAFVVWDARTEAVAARRQRRLGALVLDDAPHDAADPEEVTAAVVAGI 657 Query: 617 RDKGLSVLNWTAEAEQLRLRLLCAAKW--------------------------------- 643 R GL L WT E EQ R R+ Sbjct: 658 RSIGLHCLPWTPELEQWRARVALLRGLDAGGTGRAAEGSQPMPPRPDKSACPVESACRVE 717 Query: 644 ---------LPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 + WP V + +LLA LE WL P+++G+ +D+ AL LL W Sbjct: 718 SAGPDESACQGDSIWPDVSEGALLAGLEHWLAPYLSGITRRAQFARIDLAGALAALLPWE 777 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 + +RLD+E P VP+GS++ + Y + P LAV++QEMFG P +A GRVPLV+ L Sbjct: 778 LTRRLDAEAPERIEVPSGSQVLVDYAAEGGPVLAVKLQEMFGAGETPRVAGGRVPLVVHL 837 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LSPA RPLQ+TRDL+ FW+ Y V+ EM+GRYPKH WP+DP PTR T + Sbjct: 838 LSPAGRPLQVTRDLAGFWRTGYPAVRAEMRGRYPKHPWPEDPLAAPPTRLTTRR 891 >UniRef50_B6WQJ6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQJ6_9DELT Length = 870 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 362/846 (42%), Positives = 479/846 (56%), Gaps = 45/846 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 + S PV AV EL AL+ +LSAP GAGKS+ +PL LL P + G KI+LLEPRR+ Sbjct: 25 LPSAPVDAVRAELAGALE-HGNAVLSAPPGAGKSSRVPLWLLEAPWLEGRKILLLEPRRV 83 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR +A+ A LL E G TVGYRMR ++ V TRLE++TEGVLTR + DPELSGVG Sbjct: 84 AARALARYAARLLGEDVGQTVGYRMRQESAVSARTRLEIITEGVLTRRLLADPELSGVGC 143 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL AD+ LAL L+ + LR DL+LL+MSATLD+ ++ +L +APV+ EGR Sbjct: 144 VIFDEFHERSLHADMGLALCLESRAVLRPDLRLLVMSATLDSHKVAALLEDAPVIACEGR 203 Query: 180 SFPVERRYLPLPA------HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 FPVE RYLPLP Q +A A ++RQESGSLL FLPG GEI+RV E L Sbjct: 204 QFPVEERYLPLPPAAAHSGPQALWPHMADVIAALMRQESGSLLAFLPGTGEIRRVAELLE 263 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R+ +D L PLYG LS +Q AI PA G RKVVLAT IAETSLTIEGIRLVVD Sbjct: 264 GRLPADTRLYPLYGMLSPQEQDAAIAPAAAGERKVVLATAIAETSLTIEGIRLVVDAGLS 323 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R +RFDP +GL+RL T RVS A QRAGRAGRLEPGI L + + Q PEIL Sbjct: 324 RESRFDPASGLSRLETVRVSLAGARQRAGRAGRLEPGICCRLWQQAEEHDFRPQQRPEIL 383 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL----EGERLSAQGQ 409 +DL+ ++L WG P + WLD PP +L A+ L LGA+ E + G+ Sbjct: 384 DADLAPFCLQLAVWGARRPEDLPWLDLPPKAHLAVAREQLAGLGAITPGTEELLPTPLGR 443 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS 469 ++ L PRLA +L+ A+ A AA +A++L+E + +D +A ++ S Sbjct: 444 QLVKLPLPPRLACLLLRAREHGYGALAACVASLLDERDPLPLADASLALRLDRFCSPSDS 503 Query: 470 QQLLKRLN-------------------------VRGGEADSSLIAPLLAGAFADRIARRR 504 +RL +R + ++A A+ +R+A R Sbjct: 504 HGSFRRLRQWAERMARLADIPTGNAPDASGASLLRTARQQLPHLGEVVALAYPERVALRS 563 Query: 505 GQDG---RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQ 561 G++ +Y + NG A+L D+L+R E L + G+ RI LA +D D L + Sbjct: 564 GENNGMAQYLMRNGKAAVLPLTDSLARQEVLAVAAVDAGTR---GRIRLAAALDHDVLEK 620 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 + +S+ + G + A RR ++G L + PL +P D A+ +RD+GL Sbjct: 621 LFRAEITESEDLNVSPE-GQVNARRRRRLGALLLDDAPLPRPDGDACALALCAFVRDQGL 679 Query: 622 SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSL 681 VL W A Q R+ + + WP + ++ L LE WL PH+ LR L Sbjct: 680 RVLPWDEPARQWLARVRLLHQTWGD-PWPDLSEDWLRDELENWLAPHLGNCTDLRQLSPA 738 Query: 682 DIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNP 741 + AL LL + + +RL+ PA + P+G I Y + P +A ++QE FG P Sbjct: 739 RLADALHCLLPYPLPRRLEQLAPAQWQAPSGRSHPIVYDAEGGPFVAAKLQEFFGCEDTP 798 Query: 742 TIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAP 801 IA GRVPL L LLSPA RPLQITRDL FW+ Y +V+ EM+GRYP+H WPDDP Sbjct: 799 HIADGRVPLTLHLLSPAGRPLQITRDLGHFWRNGYPQVRAEMRGRYPRHPWPDDPLTAQA 858 Query: 802 TRRTKK 807 T RT + Sbjct: 859 TARTNR 864 >UniRef50_D2UGH8 Probable atp-dependent rna helicase protein n=1 Tax=Xanthomonas albilineans RepID=D2UGH8_XANAL Length = 886 Score = 786 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 341/865 (39%), Positives = 467/865 (53%), Gaps = 69/865 (7%) Query: 5 PVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAARN 63 P+ +LP++ +L P+++L AP GAGK+T +P LL P + G+ I++LEPRR+AAR+ Sbjct: 28 PIDPLLPQIRDSLAAHPRLVLEAPPGAGKTTQVPPALLDAPWLQGRRIVMLEPRRVAARS 87 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A +A E PG+TVGYR+R +N V TR+EVVTEG+LTRM+Q DP L GVG ++ D Sbjct: 88 AATFMARQRGEAPGETVGYRIRFENKVSARTRIEVVTEGILTRMLQDDPLLDGVGALLFD 147 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHER L ADL LAL LDVQ +R+DL++++MSATLD +RL Q L +AP + S GRSFPV Sbjct: 148 EFHERHLAADLGLALALDVQAQVREDLRIVVMSATLDGERLAQFL-DAPRLSSAGRSFPV 206 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS--------- 234 E + P + + A L+Q G +L+FLPG EI RV+ L + Sbjct: 207 EIAHFPARREESLEVQTRRAIDHALQQHPGDVLVFLPGQREIARVKAALEAGGIATGSSA 266 Query: 235 ---------------------RIGS--DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLA 271 +G+ V + PL+G L + Q K + P G R+VVLA Sbjct: 267 DAIVTHPAAAPSAHDAVHTALHMGATHGVDVLPLHGELPVEQQSKVLQADPHGRRRVVLA 326 Query: 272 TNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGI 331 TN+AE+S+T+ G+R+V+D R +DP +G +RL ++QAS QRAGRAGR+ G Sbjct: 327 TNVAESSVTLPGVRVVIDAGLAREPHYDPNSGFSRLDVTTITQASADQRAGRAGRVASGW 386 Query: 332 SLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKR 391 + L + Q R AQ EILQ +L+ L +EL WG ++D PP L AA+ Sbjct: 387 AYRLWPQSQ--RLEAQRRAEILQVELASLALELAAWGSDGVR---FVDPPPAGALAAARE 441 Query: 392 LLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG 450 LLQ LGAL+ + ++A G++M ALG PRLAAML++A + A A +AA++E + Sbjct: 442 LLQRLGALDANQIITAHGRRMLALGTHPRLAAMLLAATDARAQALACDLAALIEARDPLR 501 Query: 451 NSDL------------------GVAFSRNQPAWQQRSQQLLKRLN---VRGGEADSSLIA 489 A A + Q +RL V D+ ++ Sbjct: 502 QGGDALAARWRALAAFRRGRVPHDAHRDGLAAIDAAATQWRRRLRGKAVAPESVDAHVLG 561 Query: 490 PLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARI 548 LLA AF DRI R D RY LANG A L + L WL+A L + DA + Sbjct: 562 DLLAHAFPDRIGVRHPHDPLRYLLANGRSARLFEHSELRGEPWLVATELRHEAK--DALL 619 Query: 549 LLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDEL 608 L A VD L + PQ Q D V WD + L A R + ++ + +P + Sbjct: 620 LRAAPVDETSLRAQFPQRFVQQDVVRWDAERRALSALRESRFDRIVLDSRPAGRVDPAHA 679 Query: 609 HQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPH 668 A+ +R+ GL VL W+ + Q R R+ W+PE D P + D +LL +LE WL P Sbjct: 680 ATALTEAVRELGLQVLPWSEDLRQWRARVAGLRAWMPELDLPDLSDTALLDSLEDWLRPA 739 Query: 669 MTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRY-----HEDN 723 G L L + +AL+ L W +Q +D P VP+G I Y + Sbjct: 740 FVGKTRLDALGEDALAEALKTRLPWDRRQAIDRHAPTRIAVPSGMERRIDYALDHAGQPQ 799 Query: 724 PPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEM 783 PP LAV++QE+FG A P IA RVPLVL LLSP RPLQ+T+DL +FW Y EV+KEM Sbjct: 800 PPVLAVKLQELFGLADTPRIADSRVPLVLHLLSPGGRPLQVTQDLRNFWSNTYPEVKKEM 859 Query: 784 KGRYPKHVWPDDPANTAPTRRTKKY 808 KGRYP+H WPDDP + R K Sbjct: 860 KGRYPRHPWPDDPWTATASHRAKPR 884 >UniRef50_Q3IHM3 ATP-dependent helicase n=3 Tax=Alteromonadales RepID=Q3IHM3_PSEHT Length = 808 Score = 785 bits (2029), Expect = 0.0, Method: Composition-based stats. Identities = 339/815 (41%), Positives = 489/815 (60%), Gaps = 23/815 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LPV + +L+ L P LL AP GAGKSTWLPLQL+ G +I++LEPRRLAARN Sbjct: 2 LPVQNIYQQLVITLQSNPITLLQAPPGAGKSTWLPLQLM-RDGHFKRIVMLEPRRLAARN 60 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 +A LA+ NE G +VG R+R ++ V NTRLE+VTEG+LTRM+Q DPELS V L+I D Sbjct: 61 IASYLAKCQNESVGQSVGLRIRGESKVSVNTRLEIVTEGMLTRMLQNDPELSDVDLLIFD 120 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERS+ AD +LA L+ Q LR+DL +++MSATLD R + PV+ S GRS+P+ Sbjct: 121 EFHERSIAADTSLAFALETQSALREDLTIMLMSATLDTQRYTEFFA-CPVIQSNGRSYPI 179 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 + Y+P+ R+ DA+ + L +++GS L+FLPG EI RVQ+ L + ++ ++ Sbjct: 180 DEVYIPIKDESRWLDAIPTIIKQALSEQTGSALVFLPGQHEILRVQQALTD-LPNNCIVA 238 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 L+G +Q+ AI PAP+GMRKVVL TN+AETSLTIEGIR+V+D + R A F+ +TG Sbjct: 239 TLFGEQDKANQQAAIAPAPEGMRKVVLTTNVAETSLTIEGIRIVIDSGKHRAATFNLKTG 298 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 +T L TQ +S++S QRAGRAGR+EPG+ L +K+ ER + PEIL SD+S L++E Sbjct: 299 VTELTTQSISRSSAVQRAGRAGRIEPGVVYRLGSKQTFERRNSHDNPEILTSDISQLMLE 358 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAA 422 QWG S +++ LD+P + A LL ML A++ + +L+ G KM G D RLA Sbjct: 359 AKQWGAS-IEELTLLDKPTEQQGIQASNLLSMLEAIDSKGKLTPLGSKMLGFGADIRLAH 417 Query: 423 MLVSAKNDDEA-----ATAAKIAAILEEPPRMGNS---DLGVAFSRNQPAWQQRSQQLLK 474 ML+ A+ ++A A + A+LE N L R P ++Q+ + Sbjct: 418 MLLKAQALEQALPGIYRLAIYLVALLESRVNTANELSLALHSQQQRPHPVFKQQLKYWQS 477 Query: 475 RLNVR--GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWL 532 RL V+ G+ ++ ++ L+A A+ DRIA++RG Y LANG GA L+ D ++L Sbjct: 478 RLKVKESNGDLNTEHLSLLVALAYPDRIAKKRGSG--YLLANGAGAELNR-DYWHNDDYL 534 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQ 592 + RI A + EL P L E+D+ +++G Sbjct: 535 AIATM---GGHKGGRIFSATSLSPFELQAYLPHLFSMQTRCEFDEKTARFIHQDEVKLGA 591 Query: 593 LTVKVQPLAK-PSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 +T+ QP A+ + E +A LN G ++ N +AEQL +R+ A+K + E +P Sbjct: 592 ITLTSQPSAQKLDKSERAKAWLNLFTKHGFALFNEQKDAEQLLIRMSLASKLMSEK-FPK 650 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 ++++ L+ WL + + +L LK + ++AL+ DW Q L S LP TV + Sbjct: 651 INEQQLIQTAPQWLGVFLQDIKTLEQLKKFNYFEALQNCFDWQQQSALKSLLPLRLTVAS 710 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 GS I I Y + P L+VRMQE++G + P +AQG++PL++ELLSP +R LQ+T+DL+ F Sbjct: 711 GSNIRIEYQLEGPAKLSVRMQEVYGMTSTPLLAQGKLPLLMELLSPGKRSLQLTQDLAHF 770 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 W +YR+VQKEMKGRYPKH WPD PA + T + K Sbjct: 771 WNTSYRDVQKEMKGRYPKHFWPDSPATSIATNKVK 805 >UniRef50_B4X2F5 ATP-dependent helicase HrpB n=1 Tax=Alcanivorax sp. DG881 RepID=B4X2F5_9GAMM Length = 818 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 330/817 (40%), Positives = 456/817 (55%), Gaps = 18/817 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + PV + LL AL + +L AP GAGKST +PL LL G GKI++LEPRR+A Sbjct: 3 TDFPVDQAINPLLQALKAHGRAILEAPPGAGKSTRVPLALLDSEWGQRGKILMLEPRRVA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA +A E G +VGYR R V T LEV TEGVLTRM+ DPEL GV LV Sbjct: 63 ARSVATFMASQRGEAVGQSVGYRTRTDTRVSARTHLEVATEGVLTRMLLNDPELPGVSLV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL ADL LAL+L+ + R DL LL+MSATLD L+ +L +APVV SEG+S Sbjct: 123 IFDEFHERSLNADLGLALILEASEAFRPDLGLLVMSATLDCGPLETLL-QAPVVRSEGQS 181 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PV Y P+PA Q + + A ++ +G +L+FLPG +++RV QL R V Sbjct: 182 YPVSVAYAPVPARQDWRNHCAEQVMSLIGD-AGVMLVFLPGQSDMRRVASQLNQRSCP-V 239 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+G LSL+ Q++ I A +VL TN+AETSLTIEG+ VVD R +D Sbjct: 240 PVVTLHGGLSLDKQQRVIALAASEPHLIVLTTNVAETSLTIEGVTHVVDSGFAREPVYDA 299 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 TRL+T+R+S+A+ QR+GRAGRL PG SL L + A PEI + L L Sbjct: 300 ARHRTRLVTRRISEANARQRSGRAGRLGPGHSLRLWGEAD--VLARYQLPEIQRVGLDRL 357 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 +++L +WGC +P QM WLD PP +A LQ GAL+ L+A+G+ +A L DP Sbjct: 358 VLDLARWGCHEPQQMPWLDAPPQAAWDSAVERLQRGGALDDSGSLTARGEAIARLPVDPA 417 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFS----RNQPAWQQRSQQLLKR 475 LA +L++AK A AA++ A+L E + + + N P KR Sbjct: 418 LALLLIAAKEAGLAEPAARLVAVLSERDILAGEGVDLRRRLEALENHPQRFATVLAEAKR 477 Query: 476 LNVRGGEADSSL---IAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSRHEW 531 LN +A + LLA FA +I+RRR YQ+A+G G L ND+L EW Sbjct: 478 LNAGNDQASQGWRDGMGGLLASVFALQISRRRSGSRGRYQMADGPGLFLHDNDSLQGTEW 537 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIG 591 L+ + DARI LA + +E+ Q + + + WD + + R +G Sbjct: 538 LLV--MDTDGQPRDARIRLAWPLTDEEIESVLEQHGRWREHIGWDTEKQRVTGRRERVLG 595 Query: 592 QLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 L ++ Q LA ++ +L GIR GL+VL W A Q + R+ + P+ WP Sbjct: 596 NLVLQSQTLASLDSEQQIAGLLAGIRSLGLAVLPWEAHWRQWQARIQRLSAIQPDAGWPD 655 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 V D L+A+LE WL P++ G+ S+ LK L + AL LL Q+ L +P T+PT Sbjct: 656 VSDAGLMASLEEWLAPYLAGMRSVADLKKLPLGAALSSLLSVDQQRHLKQWMPETVTIPT 715 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 G + + Y ++ LA ++QE+FG P +A G + + + LL+PA RP IT +L+ F Sbjct: 716 GRSVRLDYTGEH-VVLAAKLQELFGLQALPPLADGALAITVHLLTPAGRPAAITDNLARF 774 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 W Y V+K+++GRYPKH WP+DP PT TKK Sbjct: 775 WAENYAAVRKDLRGRYPKHPWPEDPLQAIPTAVTKKR 811 >UniRef50_Q31I73 DEAH-box ATP-dependent helicase HrpB n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31I73_THICR Length = 848 Score = 781 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 326/855 (38%), Positives = 470/855 (54%), Gaps = 53/855 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ A+LP+L LD V+L A GAGKST +PL LL + G KII+LEPRRL Sbjct: 1 MKELPIHALLPQLRQGLDTHSNVILQADPGAGKSTAVPLALLDSSWLAGRKIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A +++A LA L E G +GY++R + NT LE+VTEGVLTR +Q DPEL+ V L Sbjct: 61 AVKSIAYYLASQLGEPVGQRIGYQIRHERKGSSNTVLEIVTEGVLTRRLQADPELNDVAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP----VVI 175 +I DEFHERSLQADLALAL L+VQ LR+DLKLLIMSAT+D L+ + A V+ Sbjct: 121 IIFDEFHERSLQADLALALCLEVQSALREDLKLLIMSATMDLTPLKTLFNRATTSVSVLQ 180 Query: 176 SEGRSFPVERRYL----PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 S GR FPV YL + A+ + L + +L+FL G +I+R+Q+Q Sbjct: 181 SAGRVFPVSVTYLSSALKSSHPADWMPALQGLIRKALSETEQDILVFLAGQSDIRRLQKQ 240 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L + D ++ L+G LSL +Q A+LP Q RK+VL+TN+AETSLTI+GI V D Sbjct: 241 LEDSLSEDFVIRCLFGGLSLEEQELALLPDAQKRRKIVLSTNLAETSLTIDGIGAVADSG 300 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R A +D +G+T L TQR+SQAS QR GRAGRL G L + Q + EPE Sbjct: 301 FTRKALYDVSSGMTTLTTQRISQASAEQRKGRAGRLFSGKCYRLWTESQQAQLLPFEEPE 360 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQK 410 I QSDLS + +EL QWG S P ++ WL PPV + AAK LL LG L E ++ GQK Sbjct: 361 ITQSDLSDVCLELAQWGVSSPTELMWLTPPPVPHYEAAKTLLISLGLLSEAGAVTELGQK 420 Query: 411 MAALGNDPRLAAMLVSAK------NDDEAATAAKIAAILEEPPRMG---NSDLGVAFSRN 461 G RLA ML+ A+ A A +AAIL E + +DL Sbjct: 421 SITFGLPSRLAKMLLVAEQVTTLDKGTAQALACDVAAILAERDVLSFSEGADLVKRLLAL 480 Query: 462 QPAWQQRSQQLL-----------------KRLNVRGGEADSSLI---------APLLAGA 495 Q + R Q L GG+A + + L+A A Sbjct: 481 QAYREDRKQARRTYSMQLSAMTQALKNAENWLKRLGGDAKNMALSLTELQRNAGALVAMA 540 Query: 496 FADRIA-RRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLV 554 + +R+A +R+GQ RY + NG G L +D+L WL + + ++ LA + Sbjct: 541 YPERLAQKRKGQGVRYVMRNGKGVCLRKDDSLQSSSWLAIASVD--GKRQEGQVYLATSI 598 Query: 555 DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLN 614 +D + + V+ +D+ + + + +G+L + + L+ P ++ + ++ Sbjct: 599 TLDTIKHLFSKQVEHKKAYRFDEEKKEISGREQTCLGKLLLDEKALSAPDQEAIQSCLMA 658 Query: 615 GIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHS 674 I +K L++L+W ++ R+ A++ + P L + + TWLLP++ V S Sbjct: 659 AI-EKDLTLLSWPSKTVDWLNRIRWLAQYC--EEVPDFSQAWLKSNIATWLLPYLNEVSS 715 Query: 675 LRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEM 734 ++ L+ LD++ L+ L + +QQ L+ + P +Y P+ + I Y +N P ++V +QE+ Sbjct: 716 VKALQKLDVFALLQAQLPYDVQQSLEQQAPRYYKTPSQKLVPINY--ENHPTVSVVLQEV 773 Query: 735 FGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPD 794 FGE ++P +A G+V L ELLSPA+RP+Q+T DL++FW+ +Y EV+KEMKGRYPKH WPD Sbjct: 774 FGELSSPKLAWGQVSLTFELLSPARRPIQVTSDLANFWRTSYFEVKKEMKGRYPKHRWPD 833 Query: 795 DPANTAPTRRTKKYS 809 +P K S Sbjct: 834 EPLAEKAGHSVKPRS 848 >UniRef50_B8J0D1 ATP-dependent helicase HrpB n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J0D1_DESDA Length = 900 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 344/878 (39%), Positives = 477/878 (54%), Gaps = 81/878 (9%) Query: 7 AAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAARNVA 65 LL AL+ ++LSA GAGKS+ +PL LLA P + G+ ++LLEPRR+AAR +A Sbjct: 19 DQERQHLLAALEQNCGLVLSASPGAGKSSRVPLWLLAAPWLRGRNVLLLEPRRVAARALA 78 Query: 66 QRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEF 125 + +A LL E G TVG RMR +N GP+TR+EVVTEGVLTRM+Q P+L VI DEF Sbjct: 79 RYMAALLGENVGHTVGLRMRDENRTGPHTRIEVVTEGVLTRMLQEQPDLPATACVIFDEF 138 Query: 126 HERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVER 185 HERSL AD+ LAL L+ + LR DL+L++MSATLD + ++ + P + S GR PV+ Sbjct: 139 HERSLAADMGLALCLESRAVLRPDLRLVVMSATLDVQAVSDLMGQCPAIHSPGRCHPVDL 198 Query: 186 RYLPLPAHQ-----------RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 YLP +A +L++E GSLL FLPG GEI++ L Sbjct: 199 HYLPHTLQTGGKISSAGGSFALWQHMASVILTLLQKEPGSLLAFLPGAGEIRQTASFLEE 258 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 R+ DVLL L+G LS Q AI PAP G RKVVLAT+IAETSLTIEG+R+VVD R Sbjct: 259 RLPPDVLLHSLHGNLSAAQQDAAIAPAPPGKRKVVLATSIAETSLTIEGVRMVVDAGLAR 318 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++RF P +GL+RL+T+RVS A QR GRAGR EPGI L AKE+ + PEIL Sbjct: 319 LSRFAPASGLSRLVTERVSLAGADQRTGRAGRTEPGICCRLWAKEEEKGMRPHIRPEILD 378 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 +DL+GLL++L WG SDP+ M WLD PP+ +L A++ L++LGA + + G +MAA Sbjct: 379 ADLTGLLLQLAAWGASDPSAMPWLDAPPLPHLAVARQCLELLGAFTPAGKPTDLGLRMAA 438 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP----------------RMGNSDLGVA 457 L +PR A ML+ A +AA+LEE R +SDL + Sbjct: 439 LPLEPRSARMLLWGAQHGHGPLACCLAALLEERDPLANTQRPEKRGQWGWRQTDSDLALR 498 Query: 458 FSR--------NQPAWQQRSQQLLKRLNVRGGE--------------------------- 482 ++ ++Q ++R ++R Sbjct: 499 LDWLCRSPHQGATAPAREHARQRVRRQSLRLTRLLAQIMKTDHDPSPIPDHKQNAASGLF 558 Query: 483 ----ADSSLIAPLLAGAFADRIARRRGQD---------GRYQLANGMGAMLDANDALSRH 529 AD S + L A A+ + +A + Y + +G A L D+L+R Sbjct: 559 ADALADVSALGLLTAVAWPEYVAMLQPGGQKGDIGAPMRTYLMRSGRAARLLQTDSLARS 618 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 E+L + P RI LA + ++ + Q+D + G + A R+ + Sbjct: 619 EFLAVAQVD--GTLPHGRIRLAAALSGTDMEELFSSQAVQTD-ITCVTEAGQVTARRQRR 675 Query: 590 IGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 +G + ++ PL +P + + A+ +R++GL+ L W ++ Q R R+ + P+ W Sbjct: 676 LGAIVLEDIPLPRPEPEHIVAALCAHVRERGLTCLPWNVQSLQWRARVALLHELEPDA-W 734 Query: 650 PAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTV 709 PAV D +LL +LE WL P MT SL L + AL LL + LD P H+ Sbjct: 735 PAVSDAALLGSLEAWLGPFMTNCTSLAALSAETFSAALHSLLLGNGGRLLDRLAPTHWQA 794 Query: 710 PTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLS 769 P+G++ I Y E+ PAL V++QEMFG P IA GRVPL+L L SPA RPLQ+TRDL+ Sbjct: 795 PSGAQRPITYGEEGGPALDVKLQEMFGCVDTPCIAGGRVPLLLRLNSPAGRPLQVTRDLA 854 Query: 770 DFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FW+ Y V+ EM+GRYP+H WP+DP T TKK Sbjct: 855 HFWRNGYPAVRGEMRGRYPRHPWPEDPLTATATALTKK 892 >UniRef50_A8LHX9 ATP-dependent RNA helicase n=30 Tax=Alphaproteobacteria RepID=A8LHX9_DINSH Length = 834 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 344/820 (41%), Positives = 472/820 (57%), Gaps = 25/820 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 +SLP+ LPELL A+ + +L AP GAGK+T +PL LL G G+I++LEPRRLAA Sbjct: 25 ASLPIDGALPELLAAMAGSGMAVLQAPPGAGKTTRVPLALL-EAGAAGRIVMLEPRRLAA 83 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R A+R+A L E G TVGYRMR + VGP TR+EVVTEG+LTR + DPEL G+G VI Sbjct: 84 RAAAERMAASLGEPVGATVGYRMRGASKVGPATRIEVVTEGILTRWLMADPELPGIGTVI 143 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 DEFHERSL ADL LAL L+V+ LR+DL LL+MSATLD + + ++ APVV S GR+F Sbjct: 144 FDEFHERSLNADLGLALCLEVRGALREDLNLLVMSATLDAEPVAALMGGAPVVTSAGRAF 203 Query: 182 PVERRY--LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE RY PLP RF AVA + L + GS L+FLPG GEI++V L R+G D Sbjct: 204 PVEARYLERPLPRGARFAPAVADLVLQALEEAEGSALVFLPGEGEIRQVAALLRDRVGRD 263 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V++ PL+GA+ L++QR AI PAP+G RKVVLAT IAETSLTIE +R+VVD + R ARFD Sbjct: 264 VVVRPLFGAMKLSEQRAAIAPAPEGQRKVVLATAIAETSLTIEDVRIVVDGGRARRARFD 323 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +G++RL+T+ VS+A QR GRAGR+ PG+ L + AA + PEI +DLSG Sbjct: 324 PGSGMSRLVTEPVSRAEAAQRQGRAGRVAPGVCYKLWTRGAEGAFAAYAPPEIAVADLSG 383 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 L ++L WG P ++ L PP A+ L MLGAL+ E R++ G+ +A + P Sbjct: 384 LALDLAVWGTG-PEDLALLTPPPEGAWAEARALCAMLGALDAEGRVTDHGRALARMPTHP 442 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEP--PRMGNSDLGVAFSRNQ-------PAWQQRS 469 RLA ML A ++AA+L E R DL + + P + R Sbjct: 443 RLAHMLHVAGRQG-----TELAALLSERDLDRGAGVDLARRVAILRGDAPAPDPGARARV 497 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSR 528 ++ KRL E + + A A+ DRI RR G+ RY LA G GA+++ + L+ Sbjct: 498 REEAKRLARDLPERAALSLGAQAALAYPDRIGLRRAGEAPRYLLAGGKGAVMEPDAPLAG 557 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 ++A L +ARI A+ V E+ + D W + A ++ Sbjct: 558 MRLIVATDLDGDP--REARIRQAVAVTEGEVRALFADRILWRDLCAWSKRFRKVVARQQE 615 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD 648 +G L + + E A L G+RD GL+ L E+LR R+ + Sbjct: 616 CLGALVLADRVWRDVPEAARAAAALEGVRDLGLAALGGGPAFERLRARVALCRA--GGLE 673 Query: 649 WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYT 708 P + + +LL A E WLLP + V L+ +D + LR L W Q ++++ P T Sbjct: 674 VPDMSEAALLEAGEAWLLPVLGQVRDADDLRRIDPLEPLRAWLGWDALQAVEAQAPGAIT 733 Query: 709 VPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDL 768 P G ++ + Y + P + R+QE +G +PT+ GRVPL L LLSP Q+P+ +T DL Sbjct: 734 TPLGRKLPVDYSGE-VPEVQARVQEFYGVTRHPTVGPGRVPLRLTLLSPGQKPVAVTSDL 792 Query: 769 SDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 FW G Y +++K+M+GRYP+H WP+DP APT R K Sbjct: 793 PGFWVGGYADLRKDMRGRYPRHPWPEDPTEAAPTTRAKPR 832 >UniRef50_C8WC01 ATP-dependent helicase HrpB n=3 Tax=Zymomonas mobilis RepID=C8WC01_ZYMMN Length = 837 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 294/830 (35%), Positives = 451/830 (54%), Gaps = 28/830 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV+++ L L ++ AP G+GK+T + LL G+IILL PRRLA Sbjct: 8 LKELPVSSIFEPLAETLRNRSNAVIIAPPGSGKTTAIAPILLQEDWCQGQIILLSPRRLA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A+ A+R+A+++ E G TVGY R ++ +R+ VVT+G+ IQ+DPEL + V Sbjct: 68 AKAAAERIAQIMGEPVGQTVGYLTRMESQRSDKSRILVVTQGIFRHQIQQDPELPNISAV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-----PEAPVVI 175 + DE HERSL +D +LAL LDVQ LR DL+L+ MSAT+D R ++ +A ++ Sbjct: 128 LFDEVHERSLDSDFSLALALDVQSALRPDLRLIAMSATMDGTRFSDLMAEEGAGKASLLE 187 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 S+GR +P+ Y + +A L + G +L FLPG+ EI+R L Sbjct: 188 SQGRCYPLHYYYEGRRPDLSIEQNMATVIRRALLENDGGILAFLPGIAEIERTA-ALLEN 246 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + S++LL L+ ++ +Q AI P+G RK+VLA+ IAETSLT++GIR+VVD R Sbjct: 247 LPSNILLYRLHSSVDFREQHAAIQAVPKGYRKIVLASAIAETSLTLDGIRIVVDSGLTRR 306 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 AR+D ++GLTRL+T+RVS+AS QRAGRAGR + G L + + PEI ++ Sbjct: 307 ARYDRQSGLTRLVTERVSRASAEQRAGRAGRQDVGYVWRLWEEAAQVGLSPYDPPEITEA 366 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAAL 414 DLS L ++ WG + P Q+ W+D PP + A + L+ L A+ +R G+ +AAL Sbjct: 367 DLSALTLDCALWGVT-PNQLRWIDSPPEKAIEEAYKRLENLQAISSDKRPLPHGRDLAAL 425 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ-----QRS 469 M++ AK A A +A +L E +G D+ + N+ + Q++ Sbjct: 426 PMPLPFGHMILKAKAKGWGALAVDVAVLLSERG-IGGMDIDIENRLNRFYREKTLRSQKA 484 Query: 470 QQLLKRLNVRGGEADSS--------LIAPLLAGAFADRIARRRGQDGRYQL-ANGMGAML 520 +QL R + G SS + +A AF DR+A+RR G + A G G L Sbjct: 485 RQLANRWRKQVGLTISSKRDVIEMGDVGACVALAFPDRVAKRRDTKGEQWISAGGRGFRL 544 Query: 521 DANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQG 580 D L++ EWL ++ ARIL A + +++ + + V ++ A Sbjct: 545 DPLSPLAQSEWLAVAEAQ--GSAQSARILSAATLMTEQINALFSEKIVVEQNVRFNFATK 602 Query: 581 TLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 +++ R ++ + + P E+ + A++ ++ GL +L W+ A LR R Sbjct: 603 SVETERLQRLDAIILSRGQDDSPDEEAIASALMAAVQQYGLDILPWSDAALALRERWAFV 662 Query: 641 AKWLPE---YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 A E + + D++LL+ ++ WL P + G L +K+ D+ QAL +L W +Q Sbjct: 663 AAHQSEEKAFSDGGLSDDTLLSKVDEWLYPLLLGCRRLDQIKASDLTQALENILGWQGKQ 722 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 +LD +PA P GS I Y D PA+ VR Q +FG +P + GRV LVL L+SP Sbjct: 723 KLDQWVPARLITPAGSSHVIDYKADGGPAVEVRPQALFGMKKHPMLLNGRVALVLRLVSP 782 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 A RP+Q T++L+DFW G++ + KEM+GRYP+H WP+DPA+ PT RT+K Sbjct: 783 AGRPIQTTQNLTDFWAGSWNMIAKEMRGRYPRHPWPEDPASAEPTLRTQK 832 >UniRef50_Q1GIW4 ATP-dependent helicase HrpB n=3 Tax=Rhodobacteraceae RepID=Q1GIW4_SILST Length = 841 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 341/858 (39%), Positives = 475/858 (55%), Gaps = 68/858 (7%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 M+ LP+ LP+L++AL + +L AP GAGK+T +PL +L G+I++LEPRRLA Sbjct: 1 MTRLPIDDALPQLISALRARGRAVLEAPPGAGKTTKVPLAILDAKLTEGRILMLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A L E G TVGYR+R + V +TR+EVVTEG+LTRM+Q DP+L GVG V Sbjct: 61 ARTAAERMASTLGEPAGHTVGYRVRGEAKVSRSTRIEVVTEGILTRMLQSDPDLPGVGAV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL DL LA L+V LRDDL LL MSATLD + ++ AP+V SEGRS Sbjct: 121 IFDEFHERSLNGDLGLAFCLEVASALRDDLLLLAMSATLDAAPVAALM-NAPIVTSEGRS 179 Query: 181 FPVERRY--LPLPAHQRFDDAVAVATAEMLRQE--------SGSLLLFLPGVGEIQRVQE 230 +PVE R+ PLPA R DA+ + + SG LL+FLPG GEI+R Sbjct: 180 YPVETRWLPAPLPAKARRIDALVDLVVQAEAETRDKDDRAGSGGLLVFLPGEGEIRRAAS 239 Query: 231 QLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 L R+ + + PL+GAL +QR AI PA +G RKVVLAT+IAETSLTIE IR+VVD Sbjct: 240 ALERRLPAACQVRPLFGALPFAEQRAAIAPATEG-RKVVLATSIAETSLTIEDIRVVVDM 298 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 Q R ARFDP G++RL+T+RV++A TQR GRAGR+ G+ L A+ + AA Sbjct: 299 GQARRARFDPGAGMSRLVTERVTRAEATQRQGRAGRVSAGVCYRLWAQGEEGALAAYPPA 358 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQ 409 EI +DL+ L +EL WG ++P + L PP + A+ LLQMLGAL+ + R++ G+ Sbjct: 359 EIEAADLTSLALELALWG-AEPQDLPLLTPPPAGSFAEAQLLLQMLGALDTKMRITEHGR 417 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS--DLGVAFSRNQPAWQQ 467 +A L PRLA M A +A +AA+L + + + DL + Q + Sbjct: 418 ALARLPLHPRLAHMFTIA-----GPESATLAALLADRDPLRGAPVDLALRLEALQDLRRF 472 Query: 468 RSQQ--------------LLKRLNVRGG----------------------EADSSLIAPL 491 R ++ KRL G + A + Sbjct: 473 RDRRPYEVKAPAHQAITAEAKRLKRHRGGHGTAAPNPVDGPAAPLFPAAPSGEPLSPAAM 532 Query: 492 LAGAFADRIA-RRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILL 550 A A+ DR+A RR+G D R+ L+ G GA+LD D L+ +L+ +A+I Sbjct: 533 AALAYPDRVAQRRKGDDARFVLSGGKGAVLDNADPLAGASYLVVTDTDGNP--REAKIRQ 590 Query: 551 ALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQ 610 A + + E+ + + W + A ++ + G L + + D + Sbjct: 591 AAQITLAEIRGLFGDQIAWQEVCSWSKRDRRVVARKQERFGALVLDDRIWKDVPPDAVAH 650 Query: 611 AMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMT 670 AML+G+RD GL + + A +L R+ D P +E L+A LE WLLP ++ Sbjct: 651 AMLDGVRDLGLRL---SPAAARLATRVELLRAE--GRDLPDFSEEGLMAKLEDWLLPMIS 705 Query: 671 GVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVR 730 G+ S KS D ALR +L W Q LD ++P + P G +I I Y + P +AVR Sbjct: 706 GMRSDADWKSFDALPALRAVLTWDQTQMLDRDVPGSFVTPLGRKIPIDYDGE-IPGIAVR 764 Query: 731 MQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKH 790 +QE+FG +PT+A V L + LLSPA+RP+QITRDL FW G+Y +V+K+M+ +YPKH Sbjct: 765 LQEVFGVTRHPTVAG--VALKVTLLSPARRPIQITRDLPGFWAGSYADVRKDMRAQYPKH 822 Query: 791 VWPDDPANTAPTRRTKKY 808 WP+DP T R + Sbjct: 823 PWPEDPTKAEATLRARPR 840 >UniRef50_Q313C3 ATP-dependent helicase HrpB n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q313C3_DESDG Length = 863 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 355/852 (41%), Positives = 481/852 (56%), Gaps = 50/852 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LPV+ +L EL L +L AP GAGK+T +PL LL G+I++LEPRRLAAR+ Sbjct: 12 LPVSGILQELTDTLARTTCCVLQAPPGAGKTTAVPLALLHAQLPAGRIVMLEPRRLAARS 71 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+R+A++L ++ G+TVG+R+R +C G TR+EVVTEGVLTRM+Q DP L+ V VI D Sbjct: 72 AARRMAQMLGQRTGETVGFRVRHHSCTGSGTRIEVVTEGVLTRMVQSDPALTDVACVIFD 131 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERSLQ DL L L L+VQ LR +L+L++MSATLD + ++ PV+ + GRS V Sbjct: 132 EFHERSLQGDLGLTLCLEVQAALRPELRLIVMSATLDGAPVAALMGGCPVLTATGRSHAV 191 Query: 184 ERRYLPLPAHQRFDDAV------AVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 R+ PA + D A L +E GS+L FLPG+ EI V E L + Sbjct: 192 HTRHFAPPAGRSMLDRHHCIQLIADGIRRALYEEQGSILAFLPGLREITLVAEALQGAVS 251 Query: 238 SD---VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 D V + PL+G L Q AI PAPQG+RKVVL+T++AETSLT+EGIR+VVD R Sbjct: 252 PDGCRVQVLPLHGRLPPQQQDAAICPAPQGVRKVVLSTSVAETSLTLEGIRIVVDSGLTR 311 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 A+FDPR+G+T L+T+R S A+ QR GRAGRL+ GI L +K A PEIL+ Sbjct: 312 KAQFDPRSGMTGLVTRRASLAAAAQRQGRAGRLQEGICYRLWSKADEPAMPAFDRPEILE 371 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG------ERLSAQG 408 +DL L +EL +WG D + WL PP ++ A LL LGAL+ ++ G Sbjct: 372 ADLVPLALELARWGACDHNSLPWLTPPPHSSMEQAAMLLCQLGALKPAPSTGLRHITQHG 431 Query: 409 QKMAALGNDPRLAAMLVSAKNDDE---AATAAKIAAILEEPPR--MGNSDLGVAF----- 458 +MAAL PRLA M+++A + + A +IAA+ E P +DL Sbjct: 432 ARMAALPVHPRLAHMVITAADTGQPDILEQACRIAAVFSEAPSALRRQADLCTVIEDAAT 491 Query: 459 -SRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLA--------------GAFADRIARR 503 R+ Q+ +RL G+ A AF DRI + Sbjct: 492 GRTTDSRTAARTAQMTRRLAAAAGKGPDDRPAVQALRTLPADARCAALCALAFPDRIGKA 551 Query: 504 RGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRC 563 GQ GR+ L G A++ A L+ +++A L + DARI A +D + Sbjct: 552 TGQ-GRFLLTCGRAAIVAATHPLAGSPFIVAAELD--GQNADARIHAAAALDSRTVETLY 608 Query: 564 PQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA-KPSEDELHQAMLNGIRDKGLS 622 + Q D ++W+ ++A + + +L ++V+PLA KP QAM GIR GLS Sbjct: 609 ADNIAQQDNIQWNPQTEAVEATTQRTLWKLPLEVRPLAEKPHTQAAVQAMCEGIRSMGLS 668 Query: 623 VLNWTAEAEQLRLRLLCAAKWLPEYD-----WPAVDDESLLAALETWLLPHMTGVHSLRG 677 L WT E E LR R++ + P WP +E+LLA LETWL P + G+ Sbjct: 669 ALPWTRETETLRQRVMLLRRHEPCGADQINIWPDFSEETLLATLETWLAPFLDGIRRRTQ 728 Query: 678 LKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGE 737 LK+L++ AL+ +L W + RL+ E P TVP+GS I + Y P LAV++QEMFG Sbjct: 729 LKNLNLKTALQAMLPWPLPARLEQEAPELLTVPSGSNIRLDYSGP-VPVLAVKLQEMFGA 787 Query: 738 ATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 P I GR+P+++ LLSPA RPLQIT+DL FWK YR+V+ EMKGRYPKH WPDDP Sbjct: 788 TATPAIGNGRIPVLVHLLSPAGRPLQITQDLEGFWKNGYRQVKAEMKGRYPKHPWPDDPV 847 Query: 798 NTAPTRRTKKYS 809 + PTRRT S Sbjct: 848 SARPTRRTNTGS 859 >UniRef50_D2QWI1 ATP-dependent helicase HrpB n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWI1_9PLAN Length = 863 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 285/859 (33%), Positives = 431/859 (50%), Gaps = 66/859 (7%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRL 59 ++ LP+ A LPELLT L + +V+L AP GAGK+T +P +L + +I++L+PRRL Sbjct: 11 LAPLPIDAALPELLTHLKASRRVVLVAPPGAGKTTRVPPAILDSGICGDKQIVVLQPRRL 70 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R++ + G+ +GY++R ++ V TR+EV+TEG+L R + DP L VG Sbjct: 71 AARATAERMSSERGSRLGEEIGYQVRFESRVSKQTRIEVLTEGILQRRLASDPFLERVGC 130 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 ++ DEFHERSL +DL L ++ V+ +RDDL +++MSATLD + + L +APVV+SEGR Sbjct: 131 IVFDEFHERSLASDLLLGMVEQVRASVRDDLMVVVMSATLDASGVSKYLADAPVVVSEGR 190 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-SRIGS 238 FPVE RY Q + V + + Q G LL+FLPGVGEI+ Q L + Sbjct: 191 KFPVEIRYDSDLNRQPLAEQVLSTVSRAIEQRDGDLLVFLPGVGEIRGAQRLLENASFSR 250 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 D + PLYG LSL +Q++A+ Q RK+VLATN+AETS+T++G+ +V+D RV+R+ Sbjct: 251 DFAIQPLYGDLSLEEQQQALRK--QSRRKIVLATNVAETSVTVDGVTIVIDSGLARVSRY 308 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 TGL RL + +S+AS QRAGRAGR PGI L + AA + PE+ + DL+ Sbjct: 309 HESTGLDRLDLEPISRASADQRAGRAGRTAPGICYRLWPEAMHRARAAFNTPEVQRVDLA 368 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDP 418 ++E+L W D A W + P L A LL+ + A + ++ G++M L P Sbjct: 369 PAVLEILAWIEPDLATFPWYEPPASGTLDRAVSLLEQIHAADERSITELGRQMLRLPIHP 428 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQ-------Q 471 RLA M++ A+ + A AA+L E ++ G + ++ S+ Q Sbjct: 429 RLARMMLYAREHGDLLPVATAAALLSERSPWNHAPGGTRGNFAPRRAREHSESDVLDRVQ 488 Query: 472 LLKRLNVRGGE-----------------------------------ADSSLIAPLLAGAF 496 + RG + L+ + F Sbjct: 489 AIAAFEARGETHFPFGELNPRSAKTLLRTRDQLLRLVDAPRNTSSMPEDELLQRAILAGF 548 Query: 497 ADRIARR----------RGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDA 546 DR+A+R R R + G G LD + + E + L G +A Sbjct: 549 PDRVAKRRETKLAPEYARDDAVRGLMVGGRGVKLDRSSQVLSEELFVCVELDMGQG--EA 606 Query: 547 RILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSED 606 + A V L PQL++ +DD ++ +R L + A P ED Sbjct: 607 IVRQASGVKRAWLD---PQLLETKRVAVFDDELLRVQGRKRTSWNGLLLDESQAALPEED 663 Query: 607 ELHQAMLNGIRDKGLSVLNW-TAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWL 665 E+ + + + V + LR A+ +P+ + P +D + L++ L Sbjct: 664 EVAEILAKEAIARWDRVFPPESEGVLDYVLRTRLLARLMPKLELPPMD----VPYLQSIL 719 Query: 666 LPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPP 725 G S+ L+ ++ L W QQ ++ E P VP+G+ I + Y D PP Sbjct: 720 PAVARGCRSIDDLRRAPWLMVIKNGLSWDQQQAIEREAPERIKVPSGNAIRLEYQADGPP 779 Query: 726 ALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKG 785 LAVR+QE+FG P IA GR P++L LL+P R Q+T DL FW +Y V+K+++ Sbjct: 780 ILAVRIQEIFGLLETPKIAGGRQPILLHLLAPNMRVAQVTDDLHSFWASSYALVRKDLRA 839 Query: 786 RYPKHVWPDDPANTAPTRR 804 RYPKH WP+DP R Sbjct: 840 RYPKHSWPEDPYTAVAQSR 858 >UniRef50_A5GWY8 HrpA-like helicase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GWY8_SYNR3 Length = 839 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 338/837 (40%), Positives = 477/837 (56%), Gaps = 45/837 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP+ +LP+LL L +++L AP GAGK+T +PL L A P G++++LEPRRLAA+ Sbjct: 7 LPIEPLLPQLLETLRVHGRLVLQAPPGAGKTTRVPLALAAAEPWSQGRVLVLEPRRLAAK 66 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+++A L E G+TVGYR+R +CVGPNTR+E+VT+G+ R++Q DP LSGV V+ Sbjct: 67 LAARQMARSLGEAVGETVGYRVRLDSCVGPNTRVELVTDGLFLRLLQEDPALSGVSAVLF 126 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER + +DLALAL +Q L DL ++ MSATLD + L ++L APV+ SEGR+FP Sbjct: 127 DEVHERGIGSDLALALTWQARQLLVPDLAVVAMSATLDAEPLARLLDNAPVLSSEGRAFP 186 Query: 183 VERRYLPLPAHQR-----FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 VE Y PA + D V A E L + GS+L+FLPG EI+R+ EQL + Sbjct: 187 VETIYAERPAPDQPSPRAIADQVRPAIREALATQQGSVLVFLPGQAEIRRLMEQLQDALP 246 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +DV L PL+G L Q A+ A G RKVVLAT +AE+SLTI+GI +V+D RV+R Sbjct: 247 ADVELTPLFGDLDARAQDAAVAAAAPGRRKVVLATALAESSLTIDGIEVVIDAGWSRVSR 306 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP TGL RL+T++ + A QR GRAGRL PG+ L +R Q +PEIL SD Sbjct: 307 FDPSTGLARLLTEKAAVAQADQRRGRAGRLGPGVCWRLWTAVDQQRRPLQPQPEILSSDP 366 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA-LEGERLSAQGQKMAALGN 416 + L +EL WG ++ ++++LD PP L A+ LLQ LGA L + + +G+ MAALG Sbjct: 367 APLALELALWGSAEGEELAFLDPPPSGPLQQARVLLQELGAMLPNGQPTPRGRAMAALGL 426 Query: 417 DPRLAAMLVSAKNDDE---------------AATAAKIAAILEEPPRMGNSDLGVAFSRN 461 PRL AM++ A + A A +AA+L E + +G Sbjct: 427 HPRLGAMVLRAADLQLPATALKLPPLSAEQRQALACVMAALLGERDPLRQDAVGADLCLR 486 Query: 462 QPAWQQR------------SQQLLKRLNVRGG-----EADSSLIAPLLAGAFADRIA--R 502 +QR + QL ++L + E ++ + +LA A+ DR+A R Sbjct: 487 LDLLEQRGRAGAIAPIRQLALQLRRQLRLPKSVPLLPEGWAAWVGIVLALAYPDRLALPR 546 Query: 503 RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQR 562 + + G L++G GA L+ D L+ E L+A L ARI LA + L Sbjct: 547 AQERPGVMVLSSGRGAALEPQDPLAASEALVAAHLD--GDRRQARIWLAAPLPRAALELL 604 Query: 563 CPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLS 622 P+ + D VEWDD + + A R+ ++G L + P +P + +L ++ +GL Sbjct: 605 QPEQLLDDDVVEWDDERQQVMARRQRRLGALLLSDAPQPQPDAVAVQAVLLEQLQRRGLQ 664 Query: 623 VLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLD 682 L WT QLR RL + PE WPAVD+ SLLA LE WL PH+ GV S L+++D Sbjct: 665 WLGWTPAQMQLRGRLAFLHQLDPEL-WPAVDEASLLAELELWLGPHLEGVRSAAQLQAID 723 Query: 683 IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPT 742 + AL LDW + +LD P +T+P+G I Y + P L+ R+Q+ FG P Sbjct: 724 LQGALLDRLDWRARSQLDELAPLRWTLPSGRNGRIDYSGEE-PVLSSRLQDFFGLQQTPR 782 Query: 743 IAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANT 799 +A GR +++ LLSPA RP +TRDL FW+ Y V+K+++GRYPKH WP+DP Sbjct: 783 LAGGRHAVLVHLLSPAGRPAAVTRDLESFWQQGYPLVRKDLRGRYPKHRWPEDPLQA 839 >UniRef50_Q47W70 ATP-dependent helicase HrpB n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47W70_COLP3 Length = 845 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 324/836 (38%), Positives = 471/836 (56%), Gaps = 33/836 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP+ A+ + +LD ++LSAP GAGKST LPL LL P + N KI LL+PRRLA + Sbjct: 9 LPIEAIKQQFCQSLDEQNTLILSAPPGAGKSTCLPLWLLTLPSLANKKIYLLQPRRLAVK 68 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 N+A LA L EK G+TVGYR+R + +TRLEV+TEG+LT++IQ+D EL G LV+ Sbjct: 69 NIATFLAAQLKEKVGETVGYRLRNDSKTSTSTRLEVITEGILTQIIQKDAELLGTALVVF 128 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERSLQ DLA AL +VQ LRDDLK+L+MSATLD + L Q LP+A ++ SEGRS+P Sbjct: 129 DEFHERSLQGDLAFALTREVQTELRDDLKILLMSATLDIEYLSQALPDAYLLNSEGRSYP 188 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 +E Y AHQR+ + + + GS+L+FLPGV +I+ + + L ++ V + Sbjct: 189 IEVSYQAPRAHQRWREHALAVIKDKMYNHIGSILVFLPGVADIRFLLDSLMAQKVEGVKI 248 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 CPL+G LSL +Q++AI P G RK+VLATNIAETSLTI+GI LV+DC E+VA FD + Sbjct: 249 CPLFGELSLKEQQQAIAPCLSGHRKIVLATNIAETSLTIDGIDLVIDCGLEKVAVFDSAS 308 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 + +L+ +++S+AS QRAGRAGRL G + L K+ ER S +I Q+DL L+ Sbjct: 309 LMNKLMQKQISKASAVQRAGRAGRLMHGQCIRLYGKDDFERRPLHSVNDIQQADLLPTLI 368 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLA 421 E +WG + A++ L+ P A + LQ L ++ + L+ G+K + L PR A Sbjct: 369 EAARWGVTALAELPLLELPSKAKEQQAWQELQSLDIVDDKYLLTKHGEKASCLPCHPRFA 428 Query: 422 AMLVSAKNDDEAATAAKIAA--------ILEEPPRMGNSDLGVAFS------------RN 461 M++ A+ T IL+ + DL Sbjct: 429 HMILMAQTQGPNITLLACLIAALLEERDILKGEQAKYDCDLIHRLQLLIQHKSNKNPLLE 488 Query: 462 QPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD 521 + Q +L R + D + LLA A+ +R+A+ RG G + NG G +++ Sbjct: 489 RILQQASRLAQNVQLRFRVHDLDLAKTGVLLAYAYPERVAKTRGNHGDFICVNGKGTLVN 548 Query: 522 ANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 DAL+ ++++ Q + LA + ++E+ ++Q D +D+ G Sbjct: 549 EQDALAGEDFIVIAQTSQLGGQLT--VRLASQISLEEITNTFAAQIKQQDIANFDNKSGR 606 Query: 582 LKAWRRLQIGQLTVKVQPLAK-PSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 + A R+ +G + + QPL + + + + + + KGLS L+W A+ L+ R L Sbjct: 607 IIAKRQTSLGAIVLSDQPLKQEVTAESISAMWCSLVMKKGLSFLSWQAKDLALKARWLWL 666 Query: 641 AKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLD 700 K+ PEYD +DDE LLA L TW P + G+ + L LD+ L LL + Q+ L Sbjct: 667 NKYFPEYDLVVIDDELLLAKLTTWFAPFVGGIKTKAQLDKLDLSSMLLSLLSYQEQKILK 726 Query: 701 SELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA--------QGRVPLVL 752 P Y PTG I Y +D P +++ MQE++G P + +PL+L Sbjct: 727 QAAPTVYVGPTGRHCPISYSQDESPKVSLPMQELYGLTITPNVGAIAGISEQNQGIPLLL 786 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ELLSPAQRP+Q+T+DL FW G+Y+ VQK+MK RYP+H WPDDP N T + K++ Sbjct: 787 ELLSPAQRPIQVTQDLVKFWSGSYQAVQKDMKSRYPRHYWPDDPVNAKATNKMKRH 842 >UniRef50_Q2RRT0 ATP-dependent helicase HrpB n=19 Tax=Bacteria RepID=Q2RRT0_RHORT Length = 860 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 348/836 (41%), Positives = 469/836 (56%), Gaps = 33/836 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+ VLP LL AL + +L AP GAGK+T +P LL + G K+++LEPRRLA R Sbjct: 25 LPIDPVLPALLEALASHGRAVLIAPPGAGKTTRVPPALLGALWLGGQKVVMLEPRRLATR 84 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+R+A E G G+R+R ++ GP TR+EV+TEG+LTR IQ DPEL+GVG VIL Sbjct: 85 AAARRMAFEAGEAVGQRFGFRVRGESRSGPLTRVEVMTEGILTRRIQDDPELAGVGCVIL 144 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER LQ DLA ALL ++Q LR DL+LL+MSATLD + ++ +APV+ S GR+FP Sbjct: 145 DEFHERGLQGDLAFALLREIQGALRPDLRLLVMSATLDGAAIAALMDDAPVIESHGRAFP 204 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V + PA + A+A L E GS+L FLPG EI V LA + +D +L Sbjct: 205 VTITHGERPAARDLGPAMARTILRALEDEPGSVLAFLPGEREIAAVAGALARALPADTVL 264 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYGAL +Q AI P P G RKVVLAT+IAETSLTIEG+R+VVD R RFDP+T Sbjct: 265 RPLYGALPPAEQDAAISPCPPGQRKVVLATDIAETSLTIEGVRIVVDSGLRRSPRFDPQT 324 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL+RL T R+SQA QR GRAGRLEPG+ L L + + AQ PEIL +DL+ L + Sbjct: 325 GLSRLDTVRISQAGAEQRRGRAGRLEPGVCLRLWPEAEHRALPAQETPEILAADLAPLAL 384 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPRLA 421 EL +WG D A + W PP L A+ LL LGALE LSA G MAAL PRLA Sbjct: 385 ELARWGARDAAALCWPTPPPPGPLAQARDLLTSLGALEPAGGLSAHGAAMAALPLHPRLA 444 Query: 422 AMLVSAKNDDEAATAAKIAA---------ILEEPPRMGNSDLGVAFSRNQPAWQQRS--- 469 M+++AK D A + P + DL ++ Sbjct: 445 HMVLAAKADGADDGALACLLAALLAERDILRPGPGAARDRDLTTRLEILIGQGRRAPAGQ 504 Query: 470 ----------QQLLKRLNVRGG-----EADSSLIAPLLAGAFADRIARRR-GQDGRYQLA 513 + RL G + + +LA A+ DRIA+ R GQ GR+ L+ Sbjct: 505 ILRQPTLGAVRDEAARLRQLAGIAASASPEPARCGRVLARAYPDRIAQARPGQPGRFLLS 564 Query: 514 NGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTV 573 +G GA++D D L+ +L + A +AR+ LA +D +L + + ++ +TV Sbjct: 565 SGRGALIDVGDPLAAAAFLAVAEVD--GAGSEARVFLAAPLDRADLEELFDEALRPCETV 622 Query: 574 EWDDAQGTLKAWRRLQIGQLTVKVQPLAK-PSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 WD + A ++G L + + L A+ GIR GL L WT E ++ Sbjct: 623 TWDPRAEAVVARVERRLGALVFESRDLPDRADPARTTPAVCAGIRRLGLGCLPWTRETDR 682 Query: 633 LRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 LR R+ + DWP + D++LLA+L WL P + G+ +D+ AL+ L+ Sbjct: 683 LRARVAFLHRVHSADDWPDLSDDALLASLADWLGPWLDGITRRSAFARIDLMAALKALIG 742 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 W LD PA VP+G ++A+ Y + P LA R+Q++FG P + G P+++ Sbjct: 743 WRRLADLDRLAPAQMDVPSGVKVALDYEVPDGPVLAARVQQLFGLTRTPAVLDGGHPVLV 802 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LLSPA RPLQ+TRDL+ FWKG+Y EV+K+M+GRYPKH WP+DP T R K Sbjct: 803 HLLSPAGRPLQVTRDLAGFWKGSYAEVRKDMRGRYPKHPWPEDPTGAEATNRVKPR 858 >UniRef50_A3Y8Y8 ATP-dependent helicase HrpB n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8Y8_9GAMM Length = 872 Score = 751 bits (1939), Expect = 0.0, Method: Composition-based stats. Identities = 315/862 (36%), Positives = 456/862 (52%), Gaps = 61/862 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAA 61 LP+ ++ L L+ + +L A GAGK+T +PL LL P + KI++LEPRRLAA Sbjct: 9 DLPITQIIEPLRQQLNHHDEAILEAEPGAGKTTCVPLALLDQPWLKQQKILVLEPRRLAA 68 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++ A R+AELL E G TVGYR+R + V TR+EV+TEG+L R++Q DP L GVGL+I Sbjct: 69 KHAAARMAELLKEPLGKTVGYRIRHEQKVSQETRIEVITEGILVRLLQDDPSLEGVGLII 128 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 DEFHER+L +DLALAL L+ + LR++ LKLL+MSATL+ L++ L + GR Sbjct: 129 FDEFHERNLDSDLALALCLESRDFLREEEPLKLLVMSATLEQASLEKALG-CRRLFCPGR 187 Query: 180 SFPVERRYLPLP-AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 SFPV Y L ++ L + G +L+FLPG EI R++ L ++ Sbjct: 188 SFPVTVNYQNLSLKQDEILPHLSRTVCHALGHDEGDILVFLPGQSEINRLESSLQDQLAD 247 Query: 239 DVLLCPLYGALSLNDQRKAIL--------PAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + PLYG L Q+ + R+V+LAT IA+TSLTI +++V+D Sbjct: 248 HCEVLPLYGKLDFKAQQAVLALNKHSDDSSNKANKRRVILATAIAQTSLTIPSVKVVIDS 307 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 R ARFD TGLTRL T++VSQA QR GRAGR G+ +++ R Q++P Sbjct: 308 GLSREARFDANTGLTRLHTRKVSQAESIQRTGRAGRTSEGVCYRWWSEDAQNRFMEQAQP 367 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE---RLSAQ 407 +I+ +DLS L +EL +WG S ++WL P + A LLQ LGALE + +L+A Sbjct: 368 QIITADLSNLALELAKWGASHHQDLTWLTPVPEGHWQQAVGLLQELGALEKQDALKLTAL 427 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR-------MGNSDLGVAFSR 460 G M+ R+ ++++ E + + A++ E + LG Sbjct: 428 GDAMSQFSASARIGRLILAGIAIKENTLSTLLGALIMEGNSGQTQQIDLSEQALGFHTKT 487 Query: 461 NQ--PAWQQRSQQLLKRLN---VRGGEADSSLIAP--------------LLAGAFADRIA 501 NQ QQ+ Q + +L V E SS +A LLA A+ DRIA Sbjct: 488 NQKVAKTQQQLLQQMNKLAQSLVNKIEQTSSHLAASDLANFTQEDKISYLLACAYPDRIA 547 Query: 502 RRRGQDGR-----YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDI 556 +++G D Y+LANG A L + A+++ ++IA S ++ LA ++ Sbjct: 548 KQQGLDNSSQWQDYKLANGRLAQLHKSQAVAKAGFIIALETGGNSKFNKDQVFLASPLNP 607 Query: 557 DELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGI 616 +L + V W L + + +G L + + L++ SE+ A+ I Sbjct: 608 HLFKDALHELTSVVEKVSWPKNSERLLSSQDTMVGGLCIVSKTLSQISEEAQTHAVCQHI 667 Query: 617 RDKGLSVLNWTAEAEQLRLRLLCAAK-----------WLPEYDWPAVDDESLLAALETWL 665 R GL +LNW A ++R RL + + ++ WP VDD SLL LE WL Sbjct: 668 RSLGLHLLNWDKAALRIRHRLAFIHQMAESDQPNLPAQITQFQWPKVDDTSLLDTLEIWL 727 Query: 666 LPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPP 725 P++ V + L L + L LDW QQ L + P V +G++I + Y PP Sbjct: 728 APYLASVSTHAKLSQLPLADILLNQLDWNQQQALANLAPESLKVASGNQIRLDYQA-FPP 786 Query: 726 ALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKG 785 +L V++QEMFG P IA +V +ELLSPAQ+PL IT+DL FW+ AY EV+KEM+G Sbjct: 787 SLKVKLQEMFGTLKTPEIAGTKVK--IELLSPAQKPLAITQDLEHFWQNAYHEVKKEMRG 844 Query: 786 RYPKHVWPDDPANTAPTRRTKK 807 RYPKH WPD+P + +TKK Sbjct: 845 RYPKHPWPDNPLEAIASAKTKK 866 >UniRef50_D1N9R3 ATP-dependent helicase HrpB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9R3_9BACT Length = 824 Score = 750 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 352/819 (42%), Positives = 483/819 (58%), Gaps = 19/819 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLA 60 S LPV +VLPEL++AL+ +LSA GAGK+T +P LL +GKI+LLEPRR+A Sbjct: 8 SDLPVRSVLPELVSALERHGSAVLSAAPGAGKTTLVPPALLEAFAPASGKILLLEPRRVA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A +L E G+ VGY +R + TR+ VVTEGVL R++Q DP L GVGLV Sbjct: 68 ARAAARRIASILGEPVGERVGYVVRGDSKQSARTRILVVTEGVLLRLLQDDPMLDGVGLV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL ADL LAL LD+++ LR +LKL+IMSATLD R+ +L APV+ + GR Sbjct: 128 IFDEFHERSLDADLDLALTLDLRENLRPELKLVIMSATLDLARVAGILGGAPVIDAPGRQ 187 Query: 181 FPVERRYLPLPAHQ-RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 FPVE+R+ + R AVA A + ++++G +L+FLPG+ EIQ V L S + +D Sbjct: 188 FPVEQRWSAEAVDRFRPAPAVARACIGLYKEKAGDMLVFLPGMREIQEVAAMLESALPAD 247 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 L+ PL+G+LS +Q A+ P P G RKVVLATN+AE+SLTI+G+ LVVD ER RF Sbjct: 248 ALILPLHGSLSPAEQDAALAPTPPGRRKVVLATNVAESSLTIDGVTLVVDSGLERRMRFS 307 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P G++ L T R+S+AS QRAGRAGR PG +L L ++ + A Q+ PEI ++L+ Sbjct: 308 PAAGMSFLETCRISKASAAQRAGRAGRTAPGTALRLWSEFDHRQLAEQTPPEIFDAELTS 367 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDP 418 +EL +WG + P Q+ WLD PP AA+RLL+ LGA + RL+A+G+K+A L P Sbjct: 368 FALELARWGAT-PEQLRWLDAPPAAGFAAAQRLLRELGAFDGANRLTARGRKLAGLPVHP 426 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS--------- 469 RL ML++A E AA+IAA+LEE + D R + ++ Sbjct: 427 RLGMMLLAAAERGETPLAAEIAALLEERDSFRSFDGVDLGERIRRMRRRPGEFRNQLVIK 486 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSR 528 +QLL + E D L A AF D I R R + R Y L+ G GA L ND L R Sbjct: 487 KQLLGLMKAPDRELDPDRSGVLTAFAFPDWIGRARSRHSRSYLLSGGAGASLPENDVLCR 546 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 E+L L GSA D+RI LA +D EL + + VE+D + A R Sbjct: 547 SEFLAVARL-TGSAGRDSRIELAAPLDRAELEAAFADRLAEHTAVEFDPERERAVARRET 605 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE-AEQLRLRLLCAAKWLPEY 647 ++G L + A+P + A+LN ++G+ + + A L ++ AA+ P Sbjct: 606 RLGALVL-SAAPAEPPPGAIPAAVLNAALERGIELPPSDQKGAAALLKKVRFAARQEPNR 664 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHY 707 +P ES L LP + V S L+ D + L+ L + + + L+ E P + Sbjct: 665 -YPDWSPESWQTVLPGLALPFLGAVRSFAELRKADWHTILQNALGYDLLRELNQEYPDFF 723 Query: 708 TVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRD 767 T P G+ I Y + P L VR+QE++G T+PT+ + + PL LELLSPA RP+Q+T D Sbjct: 724 TTPVGASHRIDYDREQ-PTLPVRVQELYGVKTHPTVGRSKFPLRLELLSPAHRPVQVTTD 782 Query: 768 LSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 L FW G+++ VQKEMKGRYPKH WPDDPA+ PT RTK Sbjct: 783 LPGFWAGSWKLVQKEMKGRYPKHFWPDDPADAVPTTRTK 821 >UniRef50_UPI0000E0EA09 ATP-dependent helicase HrpB n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0EA09 Length = 885 Score = 747 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 316/881 (35%), Positives = 466/881 (52%), Gaps = 82/881 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 SLP+ +L L L V+L+A GAGKST +PL LL+ + GKI++LEPRR+A + Sbjct: 5 SLPIHGILSTLHEILTVDDCVVLAAQPGAGKSTQVPLSLLSASWVTGKILILEPRRVAVK 64 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 ++A LA L E G TVGY++R + V TR+EV+TEG+LTR +Q DPEL+ V +VI Sbjct: 65 SIAHYLAYQLGESVGHTVGYQIRHERNVSQQTRIEVITEGILTRRLQSDPELADVSVVIF 124 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER++ ADLAL L +VQ+GLRDDL++L+MSAT+D + L A V+ GRSFP Sbjct: 125 DEFHERAVHADLALLLCREVQEGLRDDLRVLVMSATMDTLSVSDYLGGARVIDCPGRSFP 184 Query: 183 VERRYLPLP----------AHQRFDDAVAVATAEMLRQES--GSLLLFLPGVGEIQRVQE 230 VE Y P +++ V+ A L Q S G +L+FLP G I Sbjct: 185 VEISYHPPKLSKHQSMNRLSNRDIASMVSDALEHALVQLSDHGDVLVFLPSQGAIHAAMN 244 Query: 231 QLASRIG--SDVLLCPLYGALSLNDQRKAILPAPQGM-------------------RKVV 269 Q +R+ S + LYGA+SL+ Q + I P+ R+++ Sbjct: 245 QCETRLKDQSKIACYALYGAMSLSAQEEIIRPSSALYSPASSSSATASESVSSNPPRRII 304 Query: 270 LATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEP 329 ATNIAETS+TI + +V+D E+ A FD ++GLT+L+TQR++++S QRAGRAGR++ Sbjct: 305 FATNIAETSVTIPNVTMVIDTGLEKSALFDVKSGLTKLVTQRIAKSSADQRAGRAGRVQA 364 Query: 330 GISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAA 389 G + L ++ Q + A + I +DLS +EL WG DP +WLD PP ++ A Sbjct: 365 GHCIRLWSETQQYQLADFAPLAINNTDLSAFTLELSAWGIHDPLAANWLDTPPTAHIEHA 424 Query: 390 KRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR 448 +L L ++ + +LS +GQ++ +G +PRL AML+SA + E A A +AA+L E Sbjct: 425 LQLNTSLALIQSQGQLSTKGQQLLDMGIEPRLGAMLLSADSTVEQALACVLAALLTERDI 484 Query: 449 MGNSDLGVAF-------------------SRNQPAWQQRSQQLLKRLNVRGGEAD----- 484 + ++ + Q L+ G Sbjct: 485 ANDPAFVQQHFGVDVLARLSAVIHTLITSRSSKGSLHHIQQLALRWFGQITGNIQTTHSR 544 Query: 485 -------------SSLIAPLLAGAFADRIARRRGQDG------RYQLANGMGAMLDANDA 525 +++ A L A AF DRIA+RR D Y +ANG G L N+ Sbjct: 545 QAFYDALGQISDVATMSARLCAVAFVDRIAKRRAADPDLSQKISYTMANGRGVSLMPNEP 604 Query: 526 LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW 585 L+ WL+ + + D R+ LAL V ++Q V + E+ A + Sbjct: 605 LASSLWLVI--VDCDGQNNDGRVFLALAVSEAVIMQL--DSVNTENVYEYSVANNKITGR 660 Query: 586 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP 645 R+ +IGQL + PL+ ++ L + + ++GL L W EQ LR+ A++ P Sbjct: 661 RQTRIGQLVINETPLSTIPDEVLIPCFMQVVAEQGLRFLQWDKRCEQWSLRVQWLAEYCP 720 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 + + P +D+ LL L WLLP+ G+ ++R L+ L + L +L + QQ L P Sbjct: 721 D-ELPLIDEAYLLGHLNDWLLPYCHGIKTIRQLQQLALMPLLEAILTYEQQQFLAKHAPV 779 Query: 706 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT 765 YT P+G I Y + P++ + +QEMFG+ T+P +A G+VPL LLSPA+R LQ T Sbjct: 780 KYTAPSGLSCHITYSKHQAPSVHIVLQEMFGQLTSPLLANGQVPLCFTLLSPARRDLQTT 839 Query: 766 RDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 DL+ FW +Y +V+K+MKGRYPKH WP+ P P R K Sbjct: 840 SDLAHFWTHSYFDVRKDMKGRYPKHRWPEKPLEERPGRSIK 880 >UniRef50_Q1D7W0 ATP-dependent helicase HrpB n=3 Tax=Cystobacterineae RepID=Q1D7W0_MYXXD Length = 854 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 279/848 (32%), Positives = 435/848 (51%), Gaps = 57/848 (6%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAA 61 +LP+ +LP++++ L A ++L AP GAGK+T +P LL GK II+L+PRRL Sbjct: 5 ALPIDPLLPDIVSTLRGARSLVLEAPPGAGKTTRVPRALLEAGLGQGKEIIVLQPRRLPT 64 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R AQR++E L E+ G++VGY++R ++ TRL VTEGVL R + DP+L VG+V+ Sbjct: 65 RLAAQRVSEELGERVGESVGYQVRFEDVRSAKTRLSFVTEGVLGRRLLSDPKLRDVGIVV 124 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDEFHER L AD++LALL +Q+ R DLK+++MSATL+ + ++ L P + SEGR F Sbjct: 125 LDEFHERHLSADISLALLRRLQETARPDLKVVVMSATLEAEPIRAYLGGCPSLRSEGRRF 184 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQ-ESGSLLLFLPGVGEIQRVQEQLASRIGSD- 239 V YLP P + D V + Q G +L+FLPG GEI+R ++ A Sbjct: 185 DVSVEYLPAPDDRHLDQQVLSGIKRLFTQGVDGDVLVFLPGAGEIRRARDACAEFAERHG 244 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + PL+G LS +Q +A+ + RK++L+TN+AETS+TI+G+ +V+D RVA Sbjct: 245 TDVLPLHGDLSPAEQDRAVRRS--SRRKIILSTNVAETSVTIDGVAVVIDSGLARVASHS 302 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +GL L +VS+AS QR GRAGR G L L + + Q PEI ++DL+ Sbjct: 303 PWSGLPTLKLSKVSRASAIQRGGRAGRTRAGHCLRLYTQHDFDGRPEQDAPEIRRTDLAE 362 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDP 418 ++ L G +D A + + PP +L AA+ LL+ LGA++ ++ G+++ P Sbjct: 363 TVLSLRASGITDLAAFPFFEPPPAASLDAAETLLRRLGAVDPAGTVTEVGERLLRFPVHP 422 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPR------------------MGNSDLGVAFSR 460 R A ++V + A AA +AA++ E G SDL F R Sbjct: 423 RQARIIVEGERRGVGAEAAVLAALMGERDIRREARANLGQGGRPAAVVSGPSDLLELFER 482 Query: 461 NQPAWQ---------------------QRSQQLLKRL-------NVRGGEADSSLIAPLL 492 + A + R Q+ L+R R + + +L+ +L Sbjct: 483 FREAERANFASGRMHSLSLEAGAVQSVDRVQKQLRRAVRGQGPRPQRPEDVEQALMLSVL 542 Query: 493 AGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLAL 552 AG + DR+ARRR L G G+ ++ ++ + L+ +G A + LA Sbjct: 543 AG-YPDRVARRRRPRAPELLMFGGGSATLSDVSVVQDADLMVAADAEGRPGKGAVVRLAS 601 Query: 553 LVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAM 612 V+ + L+ P +++ DT++W+ ++ RL G L ++ P+ + + + Sbjct: 602 AVEPEWLLDLYPDTLEEVDTLQWNAEARRVERLTRLSYGNLVLEETRTPAPASEATARVL 661 Query: 613 LNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGV 672 + G EQ R R+ A PE +P +DD L A L + Sbjct: 662 VEAALAAGPGKFADPEALEQWRTRVALLAGAFPEAKFPTIDDTFLRDA----LASLCSDA 717 Query: 673 HSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQ 732 S + L+ + + AL L Q+ L + P T+P G + + Y PP + R+Q Sbjct: 718 RSFKDLEGVSLLDALYARLTSEQQRLLATHAPERVTLPGGRGVKVHYEPGKPPWVESRLQ 777 Query: 733 EMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 + FG A P + GRVPLVL LL+P R +Q+T DL+ FW+ Y ++KE+ +YP+H W Sbjct: 778 DFFGMAQGPNVCAGRVPLVLHLLAPNMRAVQVTTDLAGFWERHYPAIRKELCRKYPRHSW 837 Query: 793 PDDPANTA 800 P+DP + Sbjct: 838 PEDPQHAQ 845 >UniRef50_UPI0001B58540 ATP-dependent helicase HrpB n=2 Tax=Actinomycetales RepID=UPI0001B58540 Length = 806 Score = 732 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 335/814 (41%), Positives = 454/814 (55%), Gaps = 20/814 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV AVLP +L+ALD +L AP G GK+T +PL L G++++ EPRRLA Sbjct: 7 LPDLPVRAVLPSVLSALDDHGAAVLVAPPGTGKTTLVPLAL---NRGEGRVVVAEPRRLA 63 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A LL E G+TVGY +R V TR+EVVT G+L R +Q DPEL+GV V Sbjct: 64 ARAAAGRMAALLGEPVGETVGYAVRGDRKVSSRTRIEVVTSGLLVRRVQHDPELAGVSTV 123 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER L ADL LALLLDV+ GLRDDL+LL SAT+ + RL +L +APV+ + R+ Sbjct: 124 LLDECHERHLDADLLLALLLDVRAGLRDDLRLLATSATVASGRLAALLGDAPVITAHART 183 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE Y +R + AVA A + L + G +L FLPG GEI R L+S D Sbjct: 184 YPVELSYRAPVRGERPEAAVASAVRKALSEGDGDVLAFLPGAGEIARTSALLSSL---DA 240 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LS Q +A+ P+ R+VVLAT +AE+SLT+ G+R VVD RV R D Sbjct: 241 DVLPLHGRLSAARQDEALR--PRDRRRVVLATAVAESSLTVPGVRAVVDSGLARVPRVDH 298 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 R GL L T RVS A QRAGRAGR PG + + + A EPEI ++L+ Sbjct: 299 RRGLAGLATVRVSAAVAEQRAGRAGREAPGRAYRCWPEHEQATLPAYPEPEIRTAELARF 358 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 +EL W D ++W D P L AA+ LL LGA + ++ +GQKMA LG PR Sbjct: 359 ALELACWSTPDGTGLAWWDPPGEGALAAARSLLVTLGATTADGAVTPRGQKMADLGLHPR 418 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGV-AFSRNQPAWQQRSQQLLKRLN- 477 LA L+ A AA++ A+L+ + + + + +R Q+ KRL Sbjct: 419 LARALLDGAEAVGARAAAEVVALLDTGATLTDVEAELRRLRSAHDDAARRWQRDAKRLAA 478 Query: 478 -VRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAP 535 V A ++A A +R+ARRR G Y +A+G A L + L EWL Sbjct: 479 LVNSPAKADPDPALVVALAHPERLARRRAGSAPVYLMASGTAAELPSGSGLGDAEWLAVA 538 Query: 536 LLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTV 595 + I LA D V+ P LV + D V WD G + A ++G + + Sbjct: 539 EATRDPGRVHGTIRLAATADETLAVRAAPTLVSEVDEVRWD---GEVVARHVRRLGAIVL 595 Query: 596 KVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDE 655 +PL P +H A++ G+R +GL +L W+ + +LR RL + L E WP+V DE Sbjct: 596 SEKPLRNPDPQLVHDAVVAGLRAEGLGLLRWSQDGTRLRERLAFLHRVLGE-PWPSVADE 654 Query: 656 SLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRI 715 SLL+ +++WL ++ V L ++D ALRGLL W RLD P VP+GS Sbjct: 655 SLLSDVDSWL--DLSRVRRRADLANVDAGSALRGLLPWPEAARLDELAPDRLEVPSGSHY 712 Query: 716 AIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGA 775 + Y D P LAV++QE FG P++A GRVP+VL LLSPA RP +T DL FW+ Sbjct: 713 RVDYQGDQ-PVLAVKLQETFGWTETPSLADGRVPVVLHLLSPAGRPAAVTADLESFWRTG 771 Query: 776 YREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 Y V+ +++GRYPKH WP+DPA PTR T + S Sbjct: 772 YAAVRADLRGRYPKHPWPEDPATAKPTRHTTRRS 805 >UniRef50_Q5QVR0 Helicase, ATP-dependent n=1 Tax=Idiomarina loihiensis RepID=Q5QVR0_IDILO Length = 820 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 309/829 (37%), Positives = 459/829 (55%), Gaps = 36/829 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 +LP+ +VLPEL A A V+ AP GAGKST LPL LL +G I++L+PRR+AA Sbjct: 2 TLPIESVLPELAKAFPAARVVI-EAPPGAGKSTQLPLFLLQQGIADDGLIVMLQPRRVAA 60 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 N+A LA+ L E G+ VGY +R + T+L ++TEGVL R +Q DPELSG+G +I Sbjct: 61 LNIAHYLAKQLGEPVGEQVGYTVRGDSKRSKATKLLIITEGVLVRWLQDDPELSGIGTLI 120 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----APVVISE 177 DEFHER+L +DL+LAL++D LR DL LLIMSATL + L+ L V+ SE Sbjct: 121 FDEFHERNLHSDLSLALVIDALP-LRPDLNLLIMSATLPAENLKLWLENYCDQVQVLRSE 179 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 GRS+PVE Y P ++ + E +L+FLPGV EIQ++ +L+ R+ Sbjct: 180 GRSYPVEYHYRPASHVTQWLAELPKVVVEAFAAAEKGVLVFLPGVYEIQKIATELSQRMP 239 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 ++ PL+G + L QR+ + + + ++++LATNIAETSLT++GI +VVD +ER A+ Sbjct: 240 PGTIILPLHGRIPLQQQRQVLKASDE--KRIILATNIAETSLTLDGIDVVVDSGRERRAQ 297 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + P+ GL++L TQR+++AS TQRAGRAGR + G L A+ A + P++ DL Sbjct: 298 YLPQYGLSQLTTQRIAKASATQRAGRAGRQQAGQCFRLWARSDEHGFADYAPPDVATQDL 357 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGND 417 S L++++L+WG S+ +Q++W QP + AA L G + +L+A+ +++ + G D Sbjct: 358 SALVLDVLRWG-SEVSQLAWFSQPDPGHCAAATDFLASTGLIRQGQLTAKARQLESGGFD 416 Query: 418 PRL------AAMLVSAKNDDEAATAAKIAAILEEP-PRMGNSDLGVAF------SRNQPA 464 PR+ A ML +++ A A++ A LEEP + +DL P Sbjct: 417 PRILLVADAAKML----KNEQQAAMARVLATLEEPQTSIKTADLSERTQQHYQQRNQAPL 472 Query: 465 WQQRSQQLLKRLNVRGGEADSSL----IAPLLAGAFADRIARRRGQDGRYQLANGMGAML 520 WQQR + L ++ + +A L + DR+A+ +QLA G Sbjct: 473 WQQRWRYWLNHFGLKEAAETAEASAEGLAVALLQGYPDRVAKYDVSRCDFQLACGGRVS- 531 Query: 521 DANDALSRHEWLIAPLLLQGSASPDARILLALLVD-IDELVQRCPQLVQQSDTVEWDDAQ 579 + L + W I + R L VD L++ +Q T EW Q Sbjct: 532 GDSSRLKQPAWAIIFDVTFHEQDTIGRSRCLLPVDDAQALLKEAGIPLQTLQTAEWVGEQ 591 Query: 580 GTLKAWRRLQIGQLTVKVQ-PLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 L+ R Q+G L + + S ++ +A +RDKGL LNW+ A+QL+ R+ Sbjct: 592 QQLRQITRTQLGSLVLSQTTNSGQVSNEQKAEAFCLWLRDKGLDKLNWSQRAKQLQRRVY 651 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 + E + D LL +LE W P+ T SL+ L+ D Y+AL D+ QR Sbjct: 652 WL-QQAGELSAYDMSDAGLLNSLERWTAPYWTNFRSLKQLQQWDPYEALCYFFDYSELQR 710 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 L+S P + PT ++ I Y +D PP + V++QEMFG + +P I R + ++LLSPA Sbjct: 711 LNSACPEWWQTPTERKVFINYLDD-PPRVEVKLQEMFGVSESPKIIDNRQVVTVDLLSPA 769 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 R LQ T DL+ FW+ AY +V+KEM+GRYPKH WP+DP N T +TK+ Sbjct: 770 GRLLQRTNDLASFWQNAYADVRKEMRGRYPKHPWPEDPLNATATFKTKR 818 >UniRef50_B1ZU70 Helicase ATP-dependent domain protein n=5 Tax=Verrucomicrobia RepID=B1ZU70_OPITP Length = 865 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 265/866 (30%), Positives = 423/866 (48%), Gaps = 82/866 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP--GINGKIILLEPRRLA 60 LP+ + +++A+ ++++ APTG+GKST +P LL H G G++++L+PRRLA Sbjct: 5 ELPIYELESAVVSAVRAHGRLIVQAPTGSGKSTQIPQMLLQHGLLGERGEVVVLQPRRLA 64 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR +A+R+AE + + GDTVGY++R ++ V TR+ VTEG+L R + D L GV V Sbjct: 65 ARLLAKRVAEEMGSRLGDTVGYQIRLESRVSDRTRIRFVTEGILLRQMSFDASLRGVSAV 124 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHER L D++LA L +QQ R DLK+L+MSATLD LQ L ++S+GRS Sbjct: 125 VFDEFHERHLYGDISLARALQIQQSTRPDLKILVMSATLDAGALQTYLAPCETLVSQGRS 184 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLR---QESGSLLLFLPGVGEIQRVQEQLA-SRI 236 FPV YLP + D VA E R ++G +L+F+PG EI R + + SR Sbjct: 185 FPVRIEYLPKTVNFDHDAVWDVAARECERIATTQAGDMLVFMPGAYEISRTVQAIQGSRA 244 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 D + PL+G L + Q +A+ RK++++TN+AETSLTIEG+ V+D R+A Sbjct: 245 LRDCVCFPLHGELPPDAQDRAVARY--DTRKIIVSTNVAETSLTIEGVTAVIDSGLARMA 302 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 RFDP G+ L+ +++S AS QRAGRAGR PG+ + L + + + A Q PE+ + D Sbjct: 303 RFDPHRGINTLLIEKISAASADQRAGRAGRTAPGVCVRLWTEREHAQRAPQELPEVKRLD 362 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL---------EGER---- 403 L+ +++ L G D A WL++P L A+ LL LGA+ + Sbjct: 363 LAEVVLTLKASGIDDVANFPWLEKPDPKALERAEMLLADLGAIGAATPSSRQDRRDEGVA 422 Query: 404 ------LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP---RMGNSDL 454 ++ G+KM PR A ML++A+ A +AA+ + R + D+ Sbjct: 423 PPGETSITDVGRKMLRFPVHPRYARMLLAAQERGCVRPVALMAALTQGRSFLLRGVSRDV 482 Query: 455 GVAFS-----------------RNQPAWQQRSQQLLKRLNVRGGEA-------------- 483 A + S + +RL + A Sbjct: 483 DDAREDALGEEHESDFFLLMRAWSYADRSNYSLEACRRLGIHAQAARQVGPLFQQFLEIA 542 Query: 484 ------------DSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHE 530 +SS + + F+D +A+R R +L + +L A+ + Sbjct: 543 EKEGLDVGERRVESSDVRKCVLAGFSDHLAKRLDAGTLRCELVHQRRGLLARESAIHKAP 602 Query: 531 WLIAPLLLQGSASP---DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRR 587 L+A + + + + LA ++ L + P +Q+ V +D+ + + R Sbjct: 603 LLVAAEISEVEGRGGEINVLLSLATAIEEPWLEEIFPDDYRQTRGVVYDEQAKRVVSRRE 662 Query: 588 LQIGQLTVKVQPLAKPSE-DELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPE 646 + L ++ + + +E + + + + W EQ R+ A+W PE Sbjct: 663 RRFRDLVLEAKVSGDEAPLNEAAALLTKEVLAGRIKLEAWDEAVEQWITRVNRMAEWFPE 722 Query: 647 YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAH 706 + + D +E G S R ++ + LR L LD LP Sbjct: 723 LEVNPITDADRATLIEQ----VCYGELSARDVRDKPVMPVLRDWLTQEQLAVLDDYLPER 778 Query: 707 YTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITR 766 T+ G R +RY D PP L+ R+QE++G TI GRVP+ +E+L+P QRP+Q+T Sbjct: 779 LTMANGRRSKLRYENDGPPILSARIQELYGINGKFTIGHGRVPVKIEVLAPNQRPIQVTD 838 Query: 767 DLSDFWKGAYREVQKEMKGRYPKHVW 792 DL++FW+ Y +++ E+ RYP+H W Sbjct: 839 DLTNFWREQYPKIKTELSRRYPRHEW 864 >UniRef50_Q0C562 ATP-dependent helicase HrpB n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C562_HYPNA Length = 812 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 339/816 (41%), Positives = 470/816 (57%), Gaps = 20/816 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL---LAHPG-INGKIILLEPRR 58 +LP+ +PE+L AL P+++L+AP GAGK+T +PL L L PG I G+IILLEPRR Sbjct: 6 ALPIDEAMPEILRALAAGPRLVLAAPPGAGKTTRVPLALAGLLGAPGVIEGRIILLEPRR 65 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +AAR A+R+A L E+ G T+G R V TR+EV+T+G+ TR I D EL+G+G Sbjct: 66 VAARMAAERMASSLGERVGQTIGLTTRVDRKVSRGTRIEVITDGLFTRRILADQELTGIG 125 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V+ DEFHER L ADL LAL L+VQ LR+DL+LLIMSATLD + + + +APV+ SEG Sbjct: 126 AVVFDEFHERRLNADLGLALALEVQSILREDLRLLIMSATLDTGAVSRAI-DAPVIESEG 184 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 R +PVE RYL + R +D + + LR+E GS+L FLPG EI R E L +G Sbjct: 185 RMYPVETRYLGK-SDDRIEDRMPKVIRQALREEPGSVLAFLPGAREINRTAEALTG-LGP 242 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 D+L+ PLYGALS +Q A+ PAP G RK+VLAT+IAE++LTIEG+R+V+D RVA Sbjct: 243 DILIAPLYGALSPGEQDAAVSPAPPGKRKIVLATDIAESALTIEGVRIVIDSGLSRVAEE 302 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 D +RL T R S+AS QR GRAGR PG+ L + A PEIL +DLS Sbjct: 303 DLGGLGSRLTTVRASRASADQRRGRAGRTSPGVCYRLWDEAATRGLMAAPTPEILVTDLS 362 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGND 417 GL + L +WG D ++W+D PP L A+ L LGAL+ + L+ +G++MA L Sbjct: 363 GLALTLAEWGAPDAGALTWMDAPPAGKLKGARAGLIALGALDADGVLTPRGKEMARLPLP 422 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN-SDLGVAFSRNQPAWQQRSQQLLKRL 476 PRLAA++ SA E A AA+IAA++ E G+ SDL R + R++ L ++ Sbjct: 423 PRLAALVASAPGAPEKALAAEIAAMMGERGMGGDSSDLTQRLQRFRTDGSPRARALKQQA 482 Query: 477 NVR-GGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIA 534 GGE +A LLA A+ D++ARRR G G Y +A+G A + +D L++ +WL+ Sbjct: 483 KSWGGGETPGGDLAKLLARAWPDQVARRRPGSAGSYLMASGRAAGVQPSDGLAKSDWLVV 542 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLT 594 L G A+ + RILL L V E Q + +D G A R +G + Sbjct: 543 ADL--GGAAKEPRILLGLPVTEAE--ALASQKTITEERAAFDPKTGKFTARRVKALGAIV 598 Query: 595 VKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 + PL KPS + AML I G + + E+ RL A+ + P + Sbjct: 599 LSEAPLPKPSAEAAATAMLAAIETDGFAAIGAGDVIEETLSRLRILAEA-GLIEAPDISP 657 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKS-LDIYQALRGLLDWGMQQRLDSELPAHYTVPTGS 713 ESL++ WL P + L D+ +AL LDW +Q+ L + P +P+G Sbjct: 658 ESLVSGAPVWLKPALK--RRGAQLPEDHDVREALVQSLDWPLQEALRNHAPLSLELPSGQ 715 Query: 714 RIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWK 773 + + + P ++ R Q +G +P IA GRVP+ +ELLSP +P T+DL+ FW Sbjct: 716 SARVDWLDPRAPLVSARAQAFYGLTEHPKIAAGRVPVTVELLSPGMKPAATTQDLARFWG 775 Query: 774 GAYREVQKEMKGRYPKHVWPDDPANTAP-TRRTKKY 808 Y+++ K+M+GRYPKH WPDDPAN RTKK Sbjct: 776 AGYKDMAKDMRGRYPKHDWPDDPANARAHEGRTKKR 811 >UniRef50_D0D680 ATP-dependent helicase HrpB n=1 Tax=Citreicella sp. SE45 RepID=D0D680_9RHOB Length = 866 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 335/830 (40%), Positives = 480/830 (57%), Gaps = 35/830 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 M+ LP+ LP L+ AL + +L AP GAGK+T +PL +L +I++LEPRRLA Sbjct: 48 MTRLPIDDALPSLIAALRTRGRAVLQAPPGAGKTTRVPLAMLDAGLTTDRIVMLEPRRLA 107 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+AE L E PG+TVGYR+R + V TR+EVVTEG+LTRMIQ DP L+GVG V Sbjct: 108 ARAAAQRMAETLGEAPGETVGYRIRGEAKVSDATRIEVVTEGILTRMIQSDPALTGVGAV 167 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSL ADL LAL L++ LRDDL LL MSATLD + + +++ +AP++ SEGR+ Sbjct: 168 VFDEFHERSLNADLGLALCLEIAGALRDDLLLLAMSATLDAEPVAELM-DAPIITSEGRA 226 Query: 181 FPVERRY--LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPVE R+ PLP +RF++A+A A + G +L FLPG GEI+R + L R+ Sbjct: 227 FPVETRWLDAPLPKQRRFEEAMADLVARAASETEGGILAFLPGEGEIRRTEALLRKRLPP 286 Query: 239 DVLLCPLYGALSLNDQRKAILP-APQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 V + L+GA+ QR AI P +G+RK+VLAT+IAETSLTIE IR+VVD + R AR Sbjct: 287 QVRVHTLFGAMEFAAQRAAIRPETERGVRKLVLATSIAETSLTIEDIRVVVDGGRARRAR 346 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP +G++RL+T+RV++A TQRAGRAGR+ PG + L K + EI +DL Sbjct: 347 FDPGSGMSRLVTERVTRAEATQRAGRAGRVAPGTAYRLWTKGEEGAMLPYPPAEIESADL 406 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 +GL +EL WG P+++ +L P L A+ LL MLGAL+ R++ G+ +A L Sbjct: 407 AGLALELALWGAQ-PSELPFLSAPGAGALAEAQALLTMLGALDETGRITEHGKILAKLPL 465 Query: 417 DPRLAAMLVSAKNDD----------------EAATAAKIAAILEEPPRMGNSDLGVAFSR 460 PRL ML A + A ++ A+ + R S Sbjct: 466 HPRLGHMLTLAGPRAADLAALLADRDPLVGAPSDLALRLEAM-TDLRRFTESRPHQVNRA 524 Query: 461 NQPAWQQRSQQLLKRLNVRGGEADSSLI-APLLAGAFADRIA-RRRGQDGRYQLANGMGA 518 + +++L ++ G L+ A + A A+ DR+ RR+G R+QL+ G GA Sbjct: 525 ALERIRTEARRLRRQAPRDAGRGYGDLVPAAMAALAYPDRVGLRRKGDAPRFQLSGGKGA 584 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 +L+ +D L+ ++ +ARI A+ + EL P+ ++ D+ W Sbjct: 585 VLEPSDPLASARLIVVTDTD--GNPREARIRQAVQITESELRDLFPETIRWQDSCHWSKR 642 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 + A ++ ++G + + + + + +AML G+R+ G L T A + R Sbjct: 643 DRRVVARQQERLGAIALDDRAWKDAPSEAIARAMLEGVRELG---LPLTDAARRFCARAE 699 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 + D P + + +LL LE WLLP++ GV S K D ALR LDW QQ Sbjct: 700 IGRE--GGLDLPDMREPALLETLEDWLLPYIEGVRSAEDWKRFDPLPALRARLDWAQQQA 757 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 LD+ +P +T P G IAI Y ++ P +A+R+QEMFG+ T+P +A R PL + LLSPA Sbjct: 758 LDAAVPGKFTTPLGREIAIDYSGEH-PEIALRLQEMFGQRTHPMVA--RRPLRVTLLSPA 814 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 +RP+Q T DL FW G+Y +V+K+MK +YP+H WP+DP PT R K+ Sbjct: 815 RRPVQTTMDLPGFWDGSYADVRKDMKAQYPRHPWPEDPREADPTLRAKRR 864 >UniRef50_A4S6B1 Predicted protein n=2 Tax=Mamiellales RepID=A4S6B1_OSTLU Length = 936 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 329/895 (36%), Positives = 470/895 (52%), Gaps = 91/895 (10%) Query: 2 SSLPVAAVLPELLTALD-----------------------CAPQVLLSAPTGAGKSTWLP 38 + LP+ AV+ L AL+ A + ++ AP GAGK+T +P Sbjct: 44 AKLPIDAVVDACLDALEVRRRRAKARRGTDEANDWVRCEQRATRAVMQAPPGAGKTTVMP 103 Query: 39 LQLLAHPGING------KIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGP 92 L G K+I+LEPRRLAA+ A R+AE+L E+ G+TVGY++R + Sbjct: 104 LAAALAAASAGGDGRAGKVIVLEPRRLAAKAAAMRMAEMLGERAGETVGYQVRFERRASA 163 Query: 93 NTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 TR+EVVTEGVLTR ++ DPEL VGLV+ DEFHER+L AD+ALAL +VQQ +R DL+L Sbjct: 164 ATRVEVVTEGVLTRRLRNDPELRDVGLVVFDEFHERNLDADVALALCREVQQTIRPDLRL 223 Query: 153 LIMSATLDN--DRLQQML-----PEAPVVISEGRSFPVERRYLPLPAHQR--FDDAVAVA 203 L+MSATL R+ +L PE PV++SEGRS+PVE YL P + A A Sbjct: 224 LVMSATLGEMGARVAALLRDENGPEVPVIVSEGRSYPVETIYLGAPGAGWGELERATTNA 283 Query: 204 TAEMLR-QESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAP 262 + +R G +L FLPG EI RV L + + V+ PLYGALS +Q A+ P+ Sbjct: 284 VKDAVRACPDGDVLCFLPGAAEINRVVRDLQRELPNGVVALPLYGALSQEEQAAALAPSK 343 Query: 263 QGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAG 322 G R+VV++T IAE+SLTI G+++VVD + +FD R G+TRL T RVS+AS QR G Sbjct: 344 PGTRRVVVSTPIAESSLTINGVKVVVDSGLCKTPKFDARKGMTRLETTRVSRASADQRRG 403 Query: 323 RAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPP 382 RAGR+ PG L ++ + + PEILQ+DL+ + ++L WG D A M+WLD PP Sbjct: 404 RAGRIAPGTCYRLWSEASNAKLQPDTTPEILQADLTPVALDLAAWGVGDGADMAWLDPPP 463 Query: 383 VVNLLAAKRLLQMLGALEGERL--SAQGQKMAALGNDPRLAAMLVSAKNDDE--AATAAK 438 L+AA+RLL+ LGALE +L S G M+ L PRLA ML+ + A A + Sbjct: 464 EGPLIAARRLLRELGALEEGKLVPSDVGSIMSELPVHPRLARMLLFGASRGAESARLACQ 523 Query: 439 IAAILEEPPRMGNSDLGVAFSRNQPA------------------------WQQRSQQLLK 474 +AA++ + + D + A +Q ++QLL Sbjct: 524 LAAVIGDRDLISGRDAPLDVRCRLRALWGQDPLASAGDLDEEKPERAVREAKQVAEQLLG 583 Query: 475 RLNVRGGEADSSL--IAPLLAGAFADRIARRRGQDGRYQLANGMGAML---DANDAL--- 526 L LLA A+ DR+A R+ + G +QL+ G A + +DAL Sbjct: 584 NLRRLASSHPDFCAPAGLLLAVAYPDRVAARKNRGGAFQLSGGGAASVGSEHKDDALLRS 643 Query: 527 ---SRHEWLIAPLLLQGSASPDA---RILLALLVDIDELV---QRCPQLVQQSDTVEWDD 577 + ++ L G+ + + R+ LA +D L L ++SD V W Sbjct: 644 GDKANETLVVVELAGDGAGNAGSRNDRVRLAAPIDRACLESGGALYEALSKESDDVFWAS 703 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLA-KPSEDELHQAMLNGIRDKGL-SVLNWTAEAEQLRL 635 A ++ A RRL +G L ++ P + K + + AML+GIR+ GL S Sbjct: 704 ASKSVFARRRLTVGSLVLREIPFSVKDNPEATVSAMLDGIREMGLASAFGLNKATTSWLK 763 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL-DWG 694 R + + +P + +E+LL++ WL P + G S L +D+ ++ + Sbjct: 764 RAEYVHRSGVDATFPNLSEENLLSSAGEWLAPWIAGAQSKSDLAKVDVASLVKAHFCTYD 823 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 + +D P +P+GS + Y D P +A R+QE FG P + G V L L Sbjct: 824 HLKLVDDACPVAVRLPSGSNAKVDYDGD-VPVVAARIQEFFGTTETPRV--GGVNCELHL 880 Query: 755 LSPAQRPLQITRDLSDFWKGAYR-EVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LSPA R +TRDL+ FW+ AYR +V+KE+ GRYPKH WPDDP + A T +TKKY Sbjct: 881 LSPAGRTQAVTRDLASFWRNAYRTDVRKELAGRYPKHFWPDDPESAAATSKTKKY 935 >UniRef50_C4DH66 ATP-dependent helicase HrpB n=5 Tax=Actinomycetales RepID=C4DH66_9ACTO Length = 841 Score = 718 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 297/831 (35%), Positives = 430/831 (51%), Gaps = 39/831 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 LPV VLPEL ALD + +L AP G+GK+T +PL L H ++G++I+ EPRR+A R Sbjct: 25 DLPVRHVLPELREALDGNGRAVLVAPPGSGKTTLVPLALADH--LDGRVIVAEPRRVAVR 82 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+R+A L + G+ +GY +R TR+EVVT GVL + + RDPEL GV +++ Sbjct: 83 AAARRMAALSGTRLGEEIGYTVRGDRKTSARTRVEVVTTGVLVQRLHRDPELPGVAAIVV 142 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA-PVVISEGRSF 181 DE HER L DLAL +DV+ LRDDL+LL SAT ++L + A P+V + Sbjct: 143 DECHERHLDTDLALGFAVDVRANLRDDLRLLATSATARAEKLASFMGTATPIVTATASPH 202 Query: 182 PVERRYLPLP----------AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 P+ + P + D VA + L + G +L+FLPG GEI +V + Sbjct: 203 PITTVWAPPARPVSPPHGLWVDPKLLDHVAATVHKALAEREGDVLVFLPGAGEIDKVAAR 262 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L+ DV + L+G Q A+ P R+VVLA+ +AE+SLT+ G+R+VVD Sbjct: 263 LS--TVPDVDVLTLHGRQDSRQQDAALQ--PGARRRVVLASAVAESSLTVPGVRVVVDAG 318 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R R D GL L+T RVS+ S TQRAGRA R PG + + +R A PE Sbjct: 319 LSREPRVDHARGLPSLVTVRVSRDSATQRAGRAAREAPGTVYRCWPEFEHDRLPAYPRPE 378 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQK 410 I +DL+ ++ L +WG ++ LD+P A L+ LGA++ ++ +G+ Sbjct: 379 IATADLTAFILHLARWGG----EVPLLDRPADSATETAMSTLRTLGAVDGTGTITQRGEA 434 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQ 470 +AA+G PRLA L+ + A + ++ A+L DL + + Q Sbjct: 435 LAAIGTHPRLARALLDGADSIGARQSCEVVALLSADTSPSTDDLAAELRALRQRRDRAWQ 494 Query: 471 QLLKRL------------NVRGGEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMG 517 +RL + A ++ AF +R+ARR DGR Y + G Sbjct: 495 TETRRLESSLPKRLADATRPAAPRSADQAAALIVGLAFPERLARRTTPDGRVYLMTGGTQ 554 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 A L +S EWL + AR+ LA D + + L+ ++ + W Sbjct: 555 AELAPGSRVSGVEWLAIASADRQPGRAAARVRLAAPCDPETALAAAAPLLTETRDIAW-- 612 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 G ++A RR +G +T+ +PL P DE A+ +G+R +GL++L + EAE LR RL Sbjct: 613 RDGDVRAHRRESLGAITLVERPLT-PKPDEASAALRDGLRAEGLNLLRPSREAETLRSRL 671 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 + WP VDD +LL L+ WL P + L+ D+ ALR LL W Sbjct: 672 AFCRHVFGD-PWPDVDDAALLLRLDDWLGPELAKARRRADLERADVASALRRLLPWEQAA 730 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 LD P+ TVP+GS++A+ Y + P LA ++QE FG T PTIA GR LV+ LLSP Sbjct: 731 ALDRVAPSRVTVPSGSKLAVDYTDPTAPKLAGKLQEFFGWTTTPTIADGRAKLVVHLLSP 790 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 A RP +T DL FW+ Y +V+ E++GRYPKH WP+DP T R K+ Sbjct: 791 AGRPAAVTGDLESFWRTGYPQVRAELRGRYPKHPWPEDPTTAEATSRVKRR 841 >UniRef50_Q7UT94 ATP-dependent helicase n=1 Tax=Rhodopirellula baltica RepID=Q7UT94_RHOBA Length = 846 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 282/845 (33%), Positives = 430/845 (50%), Gaps = 53/845 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP---LQLLAHPGINGKIILLEPR 57 M+ LP+ VL L TA+D V+L AP GAGK+T +P LQ L + G+I +++PR Sbjct: 18 MNRLPIEDVLSPLQTAIDSGNAVVLKAPPGAGKTTGVPPAVLQTLLDNDVAGQIWVIQPR 77 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 RLAAR+VA +A NE G+T+GY +R +TR+ +T G+ R +Q DP L V Sbjct: 78 RLAARSVADWIARSRNESIGETIGYHVRLDRRESKSTRVLFMTTGMFLRRMQSDPLLENV 137 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP-----EAP 172 VILDEFHER+L+ DLALA+ ++ LRDDL L++MSAT++ + + + L A Sbjct: 138 ACVILDEFHERTLELDLALAMTHRLRSELRDDLGLVVMSATMETEPIVEYLNEVHSQNAV 197 Query: 173 VVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 + EGR+FPV Y +R + + + L SG +L+FLPGVGEI+RVQ +L Sbjct: 198 SLRCEGRAFPVSVHYGEDQPGERIERRMVKPIRDALESSSGHVLVFLPGVGEIRRVQSEL 257 Query: 233 AS-RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 + +DV L+G+LS Q +AI P+ RKVVL+TNIAETS+T+ G+ VVD Sbjct: 258 ERVDLPNDVRTVVLHGSLSPKQQDEAIRPSAD--RKVVLSTNIAETSVTVNGVTAVVDSG 315 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 +V RFD R GLT+L T +S AS QR+GRAGR PG + L ++ PE Sbjct: 316 MAKVPRFDSRRGLTKLETTSISLASADQRSGRAGRTAPGEAYRLWSQAAQRSRDEYDVPE 375 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQK 410 IL+SDLS +++ L G +D M WL PP ++ A+ LL+MLGA++ R++ GQ Sbjct: 376 ILRSDLSEVVLMLASHGETDLHAMQWLTAPPEHSVETAQALLRMLGAIDESGRITRAGQV 435 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN------SDLGVAFSRNQPA 464 MA + PR+A M A ++ A +AA++ E + + +D A N+ Sbjct: 436 MAEMPLHPRIARMTTEAVGSLPRSSVAILAALMSERDPLEDMTSMTLADKVDAIENNRVP 495 Query: 465 WQ---------QRSQQLLKRLNVRGGEADSSL--------IAPLLAGAFADRIARRRGQD 507 + + ++R G +A L A+ DR+ RR Sbjct: 496 RSVSAFSIKSLRSVAETIRRSLPEGEPGQGEAAKMDRDVAVARALLSAYPDRVVLRRADS 555 Query: 508 G-RYQLANGMGAM--LDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 R ++ G G A E L+ + ++R+ A+ + + L Sbjct: 556 PDRGRMVGGRGVSGLTRALGEGVNEELLLCFDVD--GGGTESRVRAAVPIQEEWLD---G 610 Query: 565 QLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL 624 ++V T WD +G ++ R++ G L ++ P P ++E + + + + + Sbjct: 611 EMVHTVQTQSWDAERGAVRCRRQVTYGDLILRETPAKVPGDEETASILFDNAK---MQLP 667 Query: 625 NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIY 684 A+ ++L R+ + + P+V + L L G SL+ L+S Sbjct: 668 LGGAKFQKLLHRIEMVGEV--DDQVPSVTEAMHLELLRQ----MCVGRSSLQELRSAPWK 721 Query: 685 QALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA 744 + G + + Q + E P +P G ++A+ Y E PP + V++Q FG P I Sbjct: 722 DHVLGTIGYSAWQIVQEEAPEEVQLPGGRKVAVHYVEGKPPWIEVKIQLCFGWPETPRIL 781 Query: 745 QGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPT-R 803 +GR PL L LL P RP QIT DL+ FW Y E++KE++ RYPKH WP+DP + A + Sbjct: 782 RGRQPLQLHLLGPNGRPQQITNDLASFWGSTYGEIRKELRRRYPKHDWPEDPLSAAASFN 841 Query: 804 RTKKY 808 K+ Sbjct: 842 GMKRR 846 >UniRef50_B0SIC0 HrpA-like helicase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIC0_LEPBA Length = 821 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 266/824 (32%), Positives = 425/824 (51%), Gaps = 34/824 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 + PV + L +++ ++ P +L AP G+GK+T LPL+LL GK I +LEPRR+ Sbjct: 5 FETFPVLSALQKIVDSIQNYPVTILDAPPGSGKTTALPLELLHSGIAQGKKICILEPRRI 64 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA+N A+R+++ + E G+T+GYR+R + NT++E +T+G+LTR + DPELS GL Sbjct: 65 AAKNAAKRMSQSIGEPVGNTIGYRVRFDSQTNHNTKIEFLTDGILTRYLLSDPELSEYGL 124 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHER L++DL AL Q+ R+DLK+LIMSATL+ ++ P + Sbjct: 125 LIFDEFHERRLESDLCFALARKSQEIFRNDLKILIMSATLEGQNFSKIGIPNPPIQVSME 184 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS--RIG 237 + P+E Y+ + + +Q G +L+FL G EI ++ +L S + Sbjct: 185 THPLEIFYMGESKKNNQIR-LLDLIPKATKQMEGDILVFLSGKKEILDLKYRLESMPSVH 243 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 ++ PL+G +SL+DQ K LP +G +K++L+TNIAE+S+TI G+R+V D + + Sbjct: 244 ESSVVLPLFGDMSLSDQEKVFLPDTKGKKKIILSTNIAESSVTIPGVRVVFDTGFFKHSV 303 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FD +G+T L+ R+S +S QRAGRA R G L +KE+ +++PEIL+ DL Sbjct: 304 FDADSGITHLVRDRISLSSAKQRAGRAAREGKGFVYRLWSKEEESSFYDRTKPEILEGDL 363 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 L++E+ +G + + +LD P ++L + L+ LG L+ ++L++ G+ Sbjct: 364 DRLVLEVKSFGE-EIHSLPFLDPPNKGSMLLSIERLKQLGCLDENDQLTSLGKNALQYPV 422 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAIL------EEPPRMGNSDLGVAFSRNQPAWQQRSQ 470 RL ++L E + A I +IL E S FS ++ Sbjct: 423 PIRLGSILSRLPKH-EGTSIADIISILGKESQGTEAKEFFKSASPNQFSLELKNVYEQIM 481 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRH 529 + K + + F DRIA+R+ ++G Y+L+NG L++N L Sbjct: 482 NIFKHKSENRTHTKQFHRDHYICLGFPDRIAKRKEKEGKEYKLSNGKIGFLNSN-LLELP 540 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS---DTVEWDDAQGTLKAWR 586 E+LIA L S I L V +D + ++ + + L Sbjct: 541 EFLIA--LDTFSFGQTLYITQYLPVSLDLIEDCLENQIKIRQNPEIRTNQKEESFLIVKE 598 Query: 587 RLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE------QLRLRLLCA 640 IG+L + + L KP+ + A+ + D L+W +E + R+L Sbjct: 599 ERSIGELVLGSKELHKPNPHSIQTALEGYLLD-----LDWESEWKKKEDLIHYYNRVLFL 653 Query: 641 AKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLD 700 + D V E L + + WL P + L L +A + + + Q + Sbjct: 654 VQ-NGVLDL-NVSFEHLKSNAKDWLFPFLNFETQKFNLSHLPFLEAFKAYVGYENQSLIQ 711 Query: 701 SELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQR 760 E P+ VP+GS+I I+Y + P L V++QE+FG P +A+G+V +++ LLSPA+R Sbjct: 712 KEAPSSIQVPSGSQIPIQYTNNE-PELHVKLQELFGLKQLPNLAKGKVKILIHLLSPARR 770 Query: 761 PLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRR 804 P+QIT+DL FW Y EV+KE+KGRYPKH WPD P PT+ Sbjct: 771 PVQITKDLESFWNIGYHEVKKELKGRYPKHPWPDKPWEAVPTKH 814 >UniRef50_Q3AZY8 ATP-dependent helicase HrpB n=7 Tax=Chroococcales RepID=Q3AZY8_SYNS9 Length = 834 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 316/831 (38%), Positives = 447/831 (53%), Gaps = 29/831 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-------AHPGINGKIIL 53 M P+ +LP + + +LL AP GAGK+T +PL L+ A G++++ Sbjct: 1 MKDFPIDPLLPTICQQIKPGSTLLLQAPPGAGKTTRVPLALIGALTPIAAEITRAGRVLM 60 Query: 54 LEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPE 113 +EPRRLA R A RLA+ L+E G +GY MR + T++EVVT+G+ R +Q DP Sbjct: 61 VEPRRLATRAAATRLAQSLDEPLGQRIGYAMRGEQKRSTKTQVEVVTDGLFLRRLQADPS 120 Query: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPV 173 L GV V+ DEFHER ADLALALL + LR DL L++MSATLD L+ LP+A V Sbjct: 121 LEGVSCVLFDEFHERRKDADLALALLREAAPVLRPDLALVLMSATLDLSDLRDRLPQADV 180 Query: 174 VISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQES--GSLLLFLPGVGEIQRVQEQ 231 + S GR +PVE + ++ V A S L+FLPG+ EI+R + Sbjct: 181 LESAGRCYPVETHHQRARENESLPRQVLRALENHALTLSKGSGALVFLPGLREIERCRTL 240 Query: 232 LAS-RIGSDVLLCPLYGALSLNDQRKAILP-APQGMRKVVLATNIAETSLTIEGIRLVVD 289 L+ + + L+G L L+ Q A+ P+ V+LA+ IAE+S+TI+ +RLV+D Sbjct: 241 LSDAKALQRWRIAILHGQLPLDSQSAALHRCGPEHDGTVILASGIAESSITIDAVRLVID 300 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R R+DP TG+ L T S AS QR GRAGR G + L + + +R S Sbjct: 301 SGLSRQLRYDPNTGMEGLETVPSSLASAEQRRGRAGRQSAGQCVRLWSPAEQQRRPNFSP 360 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PE+L +D +LMEL QWG + WLD PP + LQ LG L+ +LS+ G Sbjct: 361 PELLLADPQPILMELAQWGAGLGKDLPWLDAPPQAAMQEGLSDLQALGLLQPNGQLSSMG 420 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN------Q 462 ++++ LG PRL +++ A+ + +A +L E + D G Sbjct: 421 RQLSTLGVHPRLGLLMLEAREHGCSQLGCDLAVLLSERDPLAGRDAGCDLEARLSVIGQH 480 Query: 463 PAWQQRSQQLLKRLNVRG----GEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMG 517 + RS+QL ++L+ G + DS+ A L+ AF +A+ R GQ GRY L G G Sbjct: 481 RTLRVRSRQLRRQLDRLGVTAPEKTDSANAAALVLRAFPQWLAQERPGQPGRYLLRQGRG 540 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 A+L D L L + G D I LAL +D L + + ++V WD Sbjct: 541 AILPPLDQLRGSPALAVARVDTGG--RDTLIQLALPLDSSTLEELGEREGTWVESVSWDA 598 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKG-LSVLNWTAEAEQLRLR 636 ++ +KA RRLQ+G+L ++ P + PS ++ +LN + + G L L WTA +QLR R Sbjct: 599 SRQQVKAERRLQLGELVLRRTPQSAPSPEQCQALLLNALHEAGTLEALPWTAFNQQLRQR 658 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 L + WP D E+LL TWL P + S R L + +AL G L W + Sbjct: 659 LSWMHRHDG-PPWPPRDKETLLQD-TTWLAPTLLSCQSWRDLSPAMLDEALWGALSWTER 716 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 QRLD LP +P+G + +RY D LAV++QEMFGE T P + +G++P+ LELLS Sbjct: 717 QRLDQVLPERIAIPSGRQAKLRYD-DEEVVLAVKLQEMFGETTGPHVLRGQIPVTLELLS 775 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 PA RPLQ TRDL FW G+Y +V++EM+GRYPKH WPDDP PT TK+ Sbjct: 776 PAGRPLQRTRDLEGFWTGSYADVRREMRGRYPKHPWPDDPTRATPTAFTKR 826 >UniRef50_Q1N1U8 ATP-dependent helicase HrpB n=1 Tax=Bermanella marisrubri RepID=Q1N1U8_9GAMM Length = 824 Score = 706 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 268/839 (31%), Positives = 432/839 (51%), Gaps = 47/839 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 MS+ P+++ + ++ +L QV+L+AP G GKST LPL L+ P + G+I LLEPRRL Sbjct: 1 MSAYPISSHIDDIAKSLANHGQVILAAPPGTGKSTVLPLSLMEQPWLAQGQIWLLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA+ VA+RL++ L+E G ++G + ++ V+TEG+LT+ + ++ +++ L Sbjct: 61 AAKQVAKRLSQQLSEPLGQSIGLITGEDAKTSNSNKVVVMTEGILTQKLIQENDINNCAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHER+L DL LAL+ ++ LR+DLK LIMSATL+ DRL + L +AP++ + Sbjct: 121 IIFDEFHERNLATDLNLALIQQCREILREDLKCLIMSATLEIDRLSEAL-QAPLIEVNTK 179 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 ++ Y A V A + Q G L+FLPG+ EIQ V+ L + Sbjct: 180 IHELDILYQIKNASDNLSQQVNRACQSL-NQFKGDTLVFLPGLSEIQHVKSALIESGKNP 238 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + L+ + Q+ K++LA++IA+TSLTI I VVD ER+AR++ Sbjct: 239 DHIFILHSSTPQKQQQALFEDT--DFEKIILASDIAKTSLTIPSITKVVDSGLERIARYN 296 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 TG+ LIT S+A+M QRAGRAGR + G + L +++Q R +A S I Q DLS Sbjct: 297 ANTGMDELITIEASKATMLQRAGRAGRTQHGRVIRLGSEDQFSRRSAFSPIAIEQEDLSA 356 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 + L WG ++ + L++P N A +LL L AL+ R++ G+++A G P Sbjct: 357 FALALSTWGSTELSDYLLLNKPNSRNYDQALQLLHNLDALDERFRVTDHGKQLAMKGIHP 416 Query: 419 RLAAMLVSAKND-DEAATAAKIAAILEEPPRMG----NSDLGVAFS-------------- 459 RL+ ML + D + A IAA+L E + NSDL + Sbjct: 417 RLSHMLHHFHDQPDMLSLACIIAALLTEGDFLQTPALNSDLQLRIELITEQLLHNKTHGG 476 Query: 460 -------RNQPAWQQRSQQLLKRLNVRGGE---ADSSLIAPLLAGAFADRIARRRGQDGR 509 N +R ++L+K+ + + + + +LA A+ DRIA++RG+ Sbjct: 477 RLGRINQANLSRIIKRYKKLVKQFEHQTKQEIQWHDTDVGRVLAQAYPDRIAQQRGRG-- 534 Query: 510 YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 Y+L NGMGA + D+ ++++ + + I LA ++ + Sbjct: 535 YRLQNGMGASIHTKDSAKHSDYMVIAATASSAYDNNQFIKLATAIEKQTIENEFAHHTSL 594 Query: 570 SDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE 629 D + + G+L + + + ++ + + G+ ++ Sbjct: 595 DTHFLMKDKLFKVTTEK---FGELILNTTT-SPANPEDFKFYIRQEVIKNGIEYFDFNDS 650 Query: 630 AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 + L +L A P+ ++P+ DE L+ +++ WLLP +T VH L ++D + AL Sbjct: 651 QQALLNKLNLAHSLFPD-NYPSFADECLINSIDDWLLPFITDVH----LCNMDYHNALLS 705 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 +DW QQ + P +T+P+G I Y +D + ++QE FG IA+ R+P Sbjct: 706 RMDWSKQQAFKQDFPQEFTLPSGRTTQIHYEKDKA-IVKAKLQECFGLTGIQKIAKNRLP 764 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L LLSPAQRPL T+D FWK Y EV+KE +GRY KH WP+DP + + +TK++ Sbjct: 765 LEFHLLSPAQRPLAQTKDFDFFWKEVYPEVRKENRGRYAKHPWPEDPLSAIASHKTKRH 823 >UniRef50_A6W7E3 ATP-dependent helicase HrpB n=4 Tax=Actinomycetales RepID=A6W7E3_KINRD Length = 836 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 318/835 (38%), Positives = 424/835 (50%), Gaps = 38/835 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV +LPELL AL +L AP G GK+T +PL L G++++ EPRR+A Sbjct: 13 LEGLPVVEILPELLAALRPHGTAVLQAPPGTGKTTLVPLALADAR--PGRVVVAEPRRVA 70 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 R A R+A LL E G +VGY +R + V TR+EVVT G+L R + RDPEL GV V Sbjct: 71 TRAAAARMAALLGEPVGASVGYAVRGERRVSAGTRVEVVTTGLLLRRMLRDPELPGVATV 130 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER L ADLALA L ++ LR+DL L+ SATLD RL +L PVV + Sbjct: 131 LLDEVHERQLDADLALAFALQSRELLREDLWLVAASATLDVPRLAGLLGG-PVVTATAPV 189 Query: 181 FPVERRYLP----------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 P+E + P L D V L + G +L FLPG GEI+ V + Sbjct: 190 HPLEVLWCPPPRPVRPPEGLRVDPALLDHVGALVGRALAERPGDVLTFLPGAGEIRSVGD 249 Query: 231 QLASRIGS-DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +L + DV L L+G S +Q A+ P R+VVLA+ +AE+SLT+ G+R VVD Sbjct: 250 RLRRSASAADVDLVELHGRRSGAEQDAALR--PGARRRVVLASAVAESSLTVPGVRTVVD 307 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 RV R D G L T RVS+AS QRAGRA R PG L + + + Sbjct: 308 AGLSRVPRLDHARGFGGLDTVRVSRASADQRAGRAAREAPGTVLRAWSAAEHGLLLPHTP 367 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQ 409 PEI +DL+G + WG +D + LD PP L AA+ L LGAL G ++ G+ Sbjct: 368 PEIATADLTGFALLSAGWGEAD--SLPLLDAPPPGPLAAAREALHRLGALAGGAVTPLGR 425 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQR 468 +MA +G PRLA L+ TAA++ A+L E + G DL A+ Sbjct: 426 RMAEVGLHPRLARALLEGAERVGPRTAAEVVALLSEDGLLRGGDDLVAAWRSAAATGDPT 485 Query: 469 SQQLLKRLNV-------------RGGEADSSLIAPLLAGAFADRIARRRGQDGR-YQLAN 514 ++ + RL ++A A +R+ARRRG +G Y Sbjct: 486 WRREVARLRSSLGGGTGAGGGGGDAQLPRDLAAGTVVALAHPERVARRRGGEGSAYATTG 545 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G G L L WL + + R+ A + D V+ D V Sbjct: 546 GAGVELAPASGLRGATWLAVAVADRAPGRAAGRVRSAAPLTEDLARSLVG--VEVRDEVR 603 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 W G + A R +G + + V+PL P D + A+ GIR +GL VL+ A A LR Sbjct: 604 W--RDGDVAARRVEAVGAVELSVRPLPHPPADLVAAAVAEGIRREGLGVLSLGAAAASLR 661 Query: 635 LRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 R+ C L + WP + DE LLA L WL + GV S R L +D+ ALR LL W Sbjct: 662 ARVACCRAALGD-PWPDLGDEQLLATLPRWLGAQLAGVRSRRDLSRIDVLAALRALLPWP 720 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 RLD P VPTG + + Y + P LA+++QE FG P + +GRVP+VL L Sbjct: 721 QAGRLDELAPVDLPVPTGRSVRVDYADPAAPVLALKLQEAFGWRATPRLVEGRVPVVLHL 780 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 LSPA RPL +T DL FW+GAY V+ EM+GRYP+H WP+DP PT RT + S Sbjct: 781 LSPAGRPLAVTADLESFWRGAYPAVRGEMRGRYPRHPWPEDPLTAVPTARTARRS 835 >UniRef50_Q0RIL0 HrpA-like helicase, ATP-dependent n=12 Tax=Bacteria RepID=Q0RIL0_FRAAA Length = 902 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 326/838 (38%), Positives = 449/838 (53%), Gaps = 58/838 (6%) Query: 22 QVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVG 81 +L AP G GK+T +PL L + G++++ +PRR+A R A+R+A L+ + GD VG Sbjct: 71 VAVLVAPPGTGKTTLVPLALAGE--VTGRVVVAQPRRIAVRAAARRMAWLVGGEVGDAVG 128 Query: 82 YRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLD 141 Y +R + VGP TR+EVVT GVL R +QRDP+L G G VILDE HER L ADLALA +LD Sbjct: 129 YTIRGERRVGPATRVEVVTTGVLVRRLQRDPDLPGTGAVILDECHERHLDADLALAFMLD 188 Query: 142 VQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVISEGRSFPVERRYLPLP------ 191 V+ LR DL LL SAT D RL +L P APVV + F VE + P P Sbjct: 189 VRATLRPDLLLLATSATADTPRLAGVLGAPGPPAPVVGAATARFDVEVVWSPPPGPLTPA 248 Query: 192 ----AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYG 247 R D VA LR+ SG +L+FLPG GEI V +LA S V + L+G Sbjct: 249 HGLRVDPRLLDHVAATVGRALRETSGDVLVFLPGAGEIAAVAGRLAGHRDS-VDVLALHG 307 Query: 248 ALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRL 307 S Q A+ P P R+VVLAT +AE+SLT+ G+R+VVD R R D GL L Sbjct: 308 RQSGGTQDAALRPGP--RRRVVLATAVAESSLTVPGVRVVVDAGLARSPRMDHARGLGSL 365 Query: 308 ITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQW 367 +T RVS++S QRAGRAGR PG + + +R AQ+EPE+ +DL+G ++L W Sbjct: 366 VTVRVSRSSAGQRAGRAGREAPGRVYRCWSAAEHDRLPAQAEPEVAVADLTGFALDLALW 425 Query: 368 GCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPRLAAMLVS 426 G + L PP + AA+ L+ LGAL+ R++ +G+ +AA+G PRLA L++ Sbjct: 426 GHPGGDGLGLLSDPPAGAMDAARASLRALGALDDAGRVTPRGRSIAAVGVHPRLAGALLA 485 Query: 427 AKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ-----------RSQQLLKR 475 A AA I A+L G S G AW++ R ++ +R Sbjct: 486 GAGVVGAGRAADIVAVLSGDGPAGGSGPGSGSDDLLAAWRRLRANADRAASARWREESRR 545 Query: 476 LNVRG-----------------------GEADSSLIAPLLAGAFADRIARRRGQDGR-YQ 511 L G D ++ AF +R+AR R G Y Sbjct: 546 LRSAVAAATAAAAAAAVPADAPAARPGDGVTDDLAAGLVVGLAFPERLARARVPGGTTYL 605 Query: 512 LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 +A G A L A AL+ +WL + +G AR+ LA+ +D + L + + Sbjct: 606 MAGGTAAELAAGSALTGAQWLAVAVADRGVGRASARVRLAVALDEATAREAGAALRRTDE 665 Query: 572 TVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 V W + G + A R ++G + + +PLA+P L A+L+G+R +GL+ L WT +A Sbjct: 666 EVAW--SGGDVVARRVERLGAIVLTERPLARPDPALLEAAVLDGLRREGLATLRWTRDAA 723 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 LR RL ++L WP V D +LLAA WL P + GV L+ +D QALR LL Sbjct: 724 GLRQRLAFCHRFLG-APWPDVADTALLAAAPDWLGPDLAGVRRRADLERIDAGQALRRLL 782 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 W RLD+ P VP+GSR+ + Y + + P LAV++ E+FG P +A GRVP+V Sbjct: 783 PWPQAARLDALAPERLVVPSGSRVRLDYSDPDGPVLAVKVAEVFGWERVPPVADGRVPVV 842 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 L LLSPA RP+ +T DL+ FW+ Y V+ E++GRYP+H WPDDP PTRR + Sbjct: 843 LHLLSPAGRPVAVTSDLASFWRTGYPRVRAELRGRYPRHPWPDDPTTAPPTRRVTPRA 900 >UniRef50_UPI0001746914 ATP-dependent helicase HrpB n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746914 Length = 859 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 245/859 (28%), Positives = 400/859 (46%), Gaps = 74/859 (8%) Query: 2 SSLPVAAVLPELLTALD---CAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPR 57 S LP+ A+ L+ + ++ APTG+GKST +P LL H + +I++L+PR Sbjct: 6 SHLPIEAIRNPLVGWFNRTSKRANAVVKAPTGSGKSTQVPQMLLDHDLAGDKRIVVLQPR 65 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AAR +A R+A + G+ VGY++R +N TR+ VTEGV+ R + DP L V Sbjct: 66 RIAARMLAARVASERGVRLGEEVGYQVRFENVSSARTRILFVTEGVMLRHLLDDPTLGKV 125 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 G +++DEFHER L DL LA +Q R DL++++MSAT+ + L++ + + SE Sbjct: 126 GCLVIDEFHERHLDGDLCLAWARAIQAVHRPDLRIIVMSATITPEPLREFMNPCEIFDSE 185 Query: 178 GRSFPVERRYLPLPAHQR-----FDDAVAVATAEM--LRQESGSLLLFLPGVGEIQRVQE 230 GR+FPV Y +R D A A ++ R +L+F+PG EI++ Sbjct: 186 GRTFPVSISYQAPQRDKRGFEEAIWDQAARAAEDLVTTRGVQDDILIFMPGGHEIRKTIS 245 Query: 231 QLASR-IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 L R + PL+G L Q + + P R+++++TN+AETSLTIEG+R V+D Sbjct: 246 ALQGRSFARGYRILPLHGELPPQQQDEVLQ--PGQGRRIIVSTNVAETSLTIEGVRAVID 303 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++ +D R G+ L Q++S+AS QR+GRAGRL PG+ + L + + A Sbjct: 304 SGLARISSYDARRGINTLTVQKISRASAEQRSGRAGRLGPGMGVRLWPEREHLHRAENEL 363 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER--LSAQ 407 PEI + DLS + L + W + P + A LL LGA++G+ L+ Sbjct: 364 PEIRRLDLSEAFLTLKVVTKAAGMTFDWYESPTEESAHRATGLLAALGAIQGQDGSLTEL 423 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--------------GNSD 453 G++M+A PR + ML++A + AA AA+ + + D Sbjct: 424 GRQMSAFPLHPRFSRMLITAAEFNCLEDAALCAALAQGRDLLMKPTELTKRKQEDFFQRD 483 Query: 454 LGVAFSRNQPAWQQ-------------------------RSQQLLKRLNVRGG------- 481 F A+ + R+ + + L R G Sbjct: 484 DLSEFQALMRAFDKAASTKFDPTACAPYGIHARAAHDAMRTYEQIGGLCRRMGLANRAQM 543 Query: 482 ------EADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSRHEWLIA 534 + +A + AF+D + R Y LA G L+ + + L+A Sbjct: 544 NNEDVPPPRAEDLARAILSAFSDHLGVETASGSRVYALAAGYKGHLEKDAHIKPPPLLVA 603 Query: 535 PLLLQGSASP-DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQL 593 + + ++ L ++ L + P V V +D + + + L Sbjct: 604 AEIAEIQGKALQVKLNLVTRIEETWLRELFPTDVTSGFHVAYDAINKRVMNLEQTRFRDL 663 Query: 594 TVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVD 653 + + +P+ + I K L + WT + EQ RL C A W+PE + P + Sbjct: 664 VLHSRERGEPNLGLAATLLAEEIVSKRLDLPTWTEKTEQWITRLNCLAIWMPELELPTIT 723 Query: 654 DESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGS 713 +E +E G + R +K AL L + L+ P + +G Sbjct: 724 EEDRRLLIEQICY----GATAYRQIKDRTPDSALHAWLSAAHRDMLEQYAPERVKLASGR 779 Query: 714 RIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWK 773 + Y ++ PP +AV +Q ++ NP IA G+V +++E+L+P+QRP+Q T DL FWK Sbjct: 780 TARVEYRDNAPPQMAVILQHLYDTLENPRIAGGKVSVLVEILAPSQRPVQTTGDLGSFWK 839 Query: 774 GAYREVQKEMKGRYPKHVW 792 +Y+ V+ +++GRYP+H W Sbjct: 840 TSYQAVKTQLRGRYPRHEW 858 >UniRef50_C2CSI0 ATP-dependent helicase n=2 Tax=Corynebacterium RepID=C2CSI0_CORST Length = 758 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 270/812 (33%), Positives = 405/812 (49%), Gaps = 68/812 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL---AHPGINGKIILLEPRR 58 + LPVA E + L + V++ AP G GK+T +P L A +GKI++ PRR Sbjct: 9 AGLPVA----ETIGTLPSSGNVVVQAPPGTGKTTLVPPALANQAAEQDTSGKILVTAPRR 64 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +A R A RL L G +GY +R + G + +E VT GVL R + RDPELSGV Sbjct: 65 VAVRAAANRLQHL----SGQQIGYAVRGDSRHGRD--VEFVTPGVLLRRLLRDPELSGVS 118 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V +DE HER DL L + L++ Q LRDD +++ MSAT+D R +++ +APV ++E Sbjct: 119 AVAIDEVHERQCDTDLVLGMCLELAQ-LRDDFRVIAMSATVDAQRFSELM-DAPVHVTEA 176 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 ++P++ RY P + A SGS+L+F+PGV E+ V EQL Sbjct: 177 VTYPLDIRYSPAAGRAAGERDFYAHVARQATGHSGSVLVFVPGVREVNLVCEQLPGA--- 233 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 PL+G + +Q A+ ++V+AT+IAE+SLT+ G+R VVD R R Sbjct: 234 ----YPLHGQQTTAEQDAALY---TDADRIVVATSIAESSLTVPGVRTVVDAGLSRTPRR 286 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 D + G++ L+T S++S QRAGRAGR PG + +++ + + PEIL +DL+ Sbjct: 287 DAQRGMSGLVTVSTSKSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHITPEILSADLT 346 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDP 418 + L WG + LDQPP L A R L+ +GA +++A L DP Sbjct: 347 QAALFLECWGAGE--DFPLLDQPPARALADAHRTLRSIGA-----TGDVAKQLALLPTDP 399 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 RL A L+ A AA A L + PR + +R + L RL Sbjct: 400 RLGAALLK-----YGAGAAHTVAALSDSPRG---------DITRITPPKREVERLARLVP 445 Query: 479 RGGEADSSLIAPLLAGAFADRIARR--RGQDGRYQLANGMGAMLDANDALSRHEWLIAPL 536 G AD ++A AF +R+ARR ++ Y LA+G A + + + WL Sbjct: 446 DKGPADP---GAVVAAAFPERVARRATSAKEAEYLLASGTRARMLED---NGAAWLAVAD 499 Query: 537 LLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVK 596 + +A +A I A +D + + ++ + G ++ + L+ G + + Sbjct: 500 VSLSNAG-NAIIRAAARIDEQAALCA----IGTTEEITATLEGGKVRGRKVLRAGAIELS 554 Query: 597 VQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDES 656 P+ K + +A+ GIRD GL++ +++ +A+ LR RL WP VD+ Sbjct: 555 STPV-KVTGAAAEEALAAGIRDHGLAMFSFSEKAQNLRERLAHLHAHYG-APWPDVDNA- 611 Query: 657 LLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIA 716 WL P + V + + +D+Y AL+ LL W RLD P VP+G Sbjct: 612 ---EPAEWLGPELHDVAAGKPATKVDMYPALQRLLPWPEATRLDELAPERLPVPSGRDAK 668 Query: 717 IRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAY 776 I + D P +++++QE FG A +P RV LLSPA RPL +T DL+ FW G Y Sbjct: 669 IDWSGDR-PTVSIKLQECFGLAESPVYCGQRV--QFHLLSPAGRPLAVTDDLASFWAGPY 725 Query: 777 REVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 + V+ +M+GRYPKH WP+DP T RTK Sbjct: 726 QGVRADMRGRYPKHPWPEDPWTAPATARTKNR 757 >UniRef50_A2C686 DEAD/DEAH box helicase:Helicase C-terminal domain n=7 Tax=Cyanobacteria RepID=A2C686_PROM3 Length = 853 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 306/854 (35%), Positives = 461/854 (53%), Gaps = 50/854 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA----HPGINGKIILLEP 56 M LP+ ++L +L +L + VLL AP GAGK+T +PL L+ H + G+I +LEP Sbjct: 1 MGDLPIDSLLTQLCHSLTASATVLLQAPPGAGKTTRVPLALMGALDGHTPLPGRIWMLEP 60 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RRLA + A RLA L E G+ VG+ +R + T+LEV+T+G+ R +Q DP L+G Sbjct: 61 RRLAVKAAASRLAASLKEPLGERVGFAIRHEQLRSKRTQLEVITDGLFLRRLQSDPSLNG 120 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS 176 + VI DEFHER +DLALALLL+ + L +L+LL+MSATL+ LQ LPEA ++ S Sbjct: 121 IDCVIFDEFHERRRDSDLALALLLEARPLLHPELRLLLMSATLNLGELQDRLPEATLLQS 180 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEM---------LRQESGSLLLFLPGVGEIQR 227 EG++FPV + + V A ++L+FLPG EI+R Sbjct: 181 EGKAFPVATHHQTPRPDEPLPHQVMRAIKAHALPLTEASDRTSSRPTVLVFLPGQREIKR 240 Query: 228 VQEQLASRIG-SDVLLCPLYGALSLNDQRKAILPA-PQGMRKVVLATNIAETSLTIEGIR 285 QE LA++ + L L+G L+ Q +A+L A + K+VLA++IAE+SLT+EG+R Sbjct: 241 TQELLAAQESLTHWNLAYLHGQQPLHVQARALLGAESPWIGKIVLASSIAESSLTLEGVR 300 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 LV+D R +RFDP TG+ L T S AS QR GRAGR PG + L + + R Sbjct: 301 LVIDSGLSRQSRFDPNTGMEGLETVPSSLASANQRQGRAGRQSPGQCVRLWSLAEQLRKP 360 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RL 404 + PE+L +D +++EL WG + W+D PP L ++ L L AL+ + R+ Sbjct: 361 EHAPPEVLVADPMPVVLELAAWGAGLGETLPWIDPPPQSALQKGRQQLINLNALKHDGRI 420 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG----NSDLGVAFSR 460 + G+ + LG PRL +L+ AK AA A++AA+L + + SDL Sbjct: 421 TTLGRHLCKLGIHPRLGILLLQAKGWGCAALGAELAALLGDRDPLNSHQVGSDLRTRLDW 480 Query: 461 NQPAWQ------QRSQQLLKRLNVR-------------------GGEADSSLIAPLLAGA 495 + + ++ Q ++RL+ R ++ +L A L+A A Sbjct: 481 LRQDQREIHRSARQGHQQMRRLSQRLLGQLKTIRQDDQYSKQANKDLSEHALAAQLIATA 540 Query: 496 FADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLV 554 F + +A R G+ G Y+L G GA+L +D L L + G A + I LA+ + Sbjct: 541 FPEWLALERPGKAGHYRLRQGRGAILRQHDPLRSSPALAVARVDLGQA--NTLIQLAIPL 598 Query: 555 DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLN 614 + + + S++V WD+ ++A R L+IG+L ++ + L +P + + +L+ Sbjct: 599 PMQWVETLSQTDGEWSESVSWDEKSSRIRAERLLKIGELLIQRERLPQPEPEHCRKILLD 658 Query: 615 GIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHS 674 + +GL L W ++QLR RL A + L WP D + L +WL + G HS Sbjct: 659 VLCHQGLGQLPWGRRSQQLRARLELAHRHLG-TPWPPRDLKFLGHQPSSWLNQPLLGCHS 717 Query: 675 LRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEM 734 L L + +AL G L W M+Q LD LP T+P+G + Y D L+V++QEM Sbjct: 718 LDELGEEGLIEALWGELPWEMRQTLDILLPNQLTIPSGRSAVLNY-GDGEVKLSVKLQEM 776 Query: 735 FGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPD 794 FG P + G++P+ LELLSPA R LQ+T DL+ FW +Y++V++EM+GRYPKH WP+ Sbjct: 777 FGCEDGPKLINGKLPVTLELLSPAGRTLQLTTDLAGFWSDSYQDVRREMRGRYPKHPWPE 836 Query: 795 DPANTAPTRRTKKY 808 +P T R KK+ Sbjct: 837 NPRAAQATARIKKH 850 >UniRef50_D1ADU7 ATP-dependent helicase HrpB n=6 Tax=Actinomycetales RepID=D1ADU7_THECD Length = 843 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 309/844 (36%), Positives = 446/844 (52%), Gaps = 53/844 (6%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG----INGKIILLEPRR 58 +LPV +P L AL +L AP G GK+T +PL L G +++++EPRR Sbjct: 14 ALPVRTAIPALRAALHEHGTAVLVAPPGTGKTTLVPLALAGEAGPASPRRSRVLVVEPRR 73 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 A R A+R+A +L E+ G VG+ +R ++ P + +EVVT GVL R +QRDPEL+GV Sbjct: 74 PAVRAAARRMAWMLGEQVGRRVGFAVRGEHR--PGSSVEVVTTGVLLRRLQRDPELAGVD 131 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V+LDE HER L AD ALA LLDV+ LR DL+L+ SAT + + ++L PVV + Sbjct: 132 AVLLDECHERHLDADTALAFLLDVRAALRPDLRLVAASATAEAEPWARLLGG-PVVTAAA 190 Query: 179 RSFPVERRY----------LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 PVE + + + + VA L + G LL FLPGVGEI RV Sbjct: 191 ELHPVEVVWAPPPRPLPPPHGMRVAAQLLEHVAATIRRALAERDGDLLCFLPGVGEIARV 250 Query: 229 QEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 L + L L+G + DQ + A R+VVLAT +AE+SLT+ G+R+VV Sbjct: 251 AALLED-LAPQAELLTLHGRATARDQEAVL--AGGTRRRVVLATAVAESSLTVPGVRIVV 307 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D R R D GL L T RVS+A+ QRAGRAGR PG+ + + R + Sbjct: 308 DSGLAREPRTDHARGLGALTTVRVSKAAAEQRAGRAGRQGPGVVYRCWSAAEHRRLPDRP 367 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQ 407 PEI +DL+ +++ WG D ++ D PP L AA+ LQ +GAL+ + R++ + Sbjct: 368 RPEIELADLTAFALQIACWGDPDATGLALPDPPPRAALQAARAALQAIGALDADGRVTDR 427 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD----------LGVA 457 G++M G PRLA L+ AA+ A+L EPP D G Sbjct: 428 GRRMVHAGVHPRLARALLDGAPLVGRRGAAEAVALLSEPPPAWAGDDLADLLRAARTGRR 487 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEA-------------DSSLIAPLLAGAFADRIARRR 504 + W++ +++LL+ L G + D + + ++A AF +R+A+ R Sbjct: 488 DAAYTDRWRRETRRLLRVLTGPGEDTGGADGQECGDAGTDETALGTVVALAFPERVAKAR 547 Query: 505 GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 G GRY +A+G GA L A L WL + + A+ ARI LA +D + Sbjct: 548 GA-GRYVMASGTGAELAAGSHLENARWLAIAVADRPPAAASARIRLAAAIDAEVAAVAAA 606 Query: 565 QLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL 624 L+ +++ V W G ++A R ++G + + PLA P ++ +A+ G+R +GLS+L Sbjct: 607 PLLTETEEVAW--RDGDVRARRIRRLGAIELAAVPLADPDPAQVAEALAEGLRREGLSLL 664 Query: 625 NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIY 684 NWT +A LR RL + L + WP V D ++L + + G+ L +D+ Sbjct: 665 NWTPQAVALRERLAFCRRALGD-PWPDVGDAAVLEEVAK----RLHGLRRRADLAGVDLS 719 Query: 685 QALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA 744 LR +L W RL+ P TVP+GSRI I Y + P LAV++QE+FG P +A Sbjct: 720 AVLRDMLPWECAARLEEMAPERITVPSGSRIRIDYRGEQ-PVLAVKLQELFGWRQAPRLA 778 Query: 745 QGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRR 804 GRVPLV+ LLSPA RP +T DL+ FW+ YR V+ E++GRYP+H WP+DPA PTR Sbjct: 779 GGRVPLVVHLLSPAGRPAAVTGDLASFWREGYRAVRAELRGRYPRHPWPEDPATAEPTRH 838 Query: 805 TKKY 808 K Sbjct: 839 AKPR 842 >UniRef50_C6WNJ1 ATP-dependent helicase HrpB n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WNJ1_ACTMD Length = 772 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 314/805 (39%), Positives = 438/805 (54%), Gaps = 36/805 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV AVLPEL+ L +L AP G GK+T +PL L G++++ EPRR+A Sbjct: 3 LPDLPVRAVLPELIETLSGWGAAVLVAPPGTGKTTLVPLAL------EGRVVIAEPRRIA 56 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A LL E G TVGY +R V +TR+EVVT G+L R +Q DPELSGVG V Sbjct: 57 ARAAASRMAALLGEPVGATVGYSVRGDRKVSRSTRIEVVTSGLLVRRLQHDPELSGVGTV 116 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER L ADL LALLLD + GLR DL+LL SAT+ DRL +++ PV+ + R+ Sbjct: 117 VLDECHERHLDADLLLALLLDARAGLRPDLRLLATSATVAADRLAELMGGVPVLTAHART 176 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE ++P ++R + VA A + + G +L+FLPGV EI+RV G D+ Sbjct: 177 YPVELFHVPPQKNERSEAVVARAIRRAVAETPGDVLVFLPGVPEIRRVAALFQ---GGDL 233 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+G L+ +Q + + ++V+L+T+IAE+SLT+ G+R VVD RV R D Sbjct: 234 RVDVLHGRLTAAEQDAVLRVGRE--QRVLLSTSIAESSLTVPGVRAVVDAGLSRVPRVDH 291 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 R GL L T RVS A QRAGRAGR PG + + + EPEI +DL+ L Sbjct: 292 RRGLAGLATVRVSAAVADQRAGRAGREAPGRAYRCWPEHEQSTLPRYPEPEIRSADLTSL 351 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 +EL WG D +SW D PP L AAK +L LGAL R++ +G++M+ALG PRL Sbjct: 352 ALELACWGTPDGEGLSWWDAPPRGALEAAKAVLGNLGALRDGRVTERGERMSALGLHPRL 411 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 A L+ + TA ++ AIL+E R D+ + A ++ +L K + Sbjct: 412 ARALLDGGELAGSRTATEVVAILDED-RGSGEDI-----TGRSADRREVGRLSKLIPAAS 465 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSRHEWLIAPLLLQ 539 G D +L+ +A A +R+ARRR Y +A G A L L+ EWL + + Sbjct: 466 GSGDQALV---VALAHPERLARRRAPGSPVYLMAGGTAAELPQGSRLADAEWLAIAVADR 522 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQP 599 ARI LA D VQ P L+ + + + WD G + A R +G + + Sbjct: 523 EPGRIHARIRLAARADEQLAVQAAPALLGEREEIAWD---GDVVARRVRHLGAIPLSTTQ 579 Query: 600 LAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLA 659 L L QA+ G+ +GL +L+W A + R RL + L + WP V D +LL Sbjct: 580 LTGT--AHLQQALRAGLAAEGLGLLSWGPAAVRTRQRLAFLHEVLGD-PWPEVTDAALLP 636 Query: 660 ALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRY 719 ++ + L L L+ + W + D+ P VP+GSRIAI Y Sbjct: 637 LVD------LGNARRKSDLAKLKADHVLQAAMPWPAAAKFDALAPDRLEVPSGSRIAIDY 690 Query: 720 HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREV 779 PP L V++QE+FG PT+A +PLVL LL+PA RP +T DL FW+ Y +V Sbjct: 691 STT-PPTLPVKVQEVFGWTETPTVAG--IPLVLHLLTPAGRPTAVTGDLKSFWQTGYPQV 747 Query: 780 QKEMKGRYPKHVWPDDPANTAPTRR 804 + E++GRYPKH WP+DP P RR Sbjct: 748 RAELRGRYPKHRWPEDPMTAPPARR 772 >UniRef50_A8HQ16 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8HQ16_CHLRE Length = 830 Score = 688 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 285/834 (34%), Positives = 433/834 (51%), Gaps = 71/834 (8%) Query: 25 LSAPTGAGKSTWLPLQLLAH-----PGINGKIILLEPRRLAARNVAQRLAELLNEKPGDT 79 + AP GAGK+T +PL LL H G N KI++LEPRR+AA+ A+R+A L + G T Sbjct: 6 VQAPPGAGKTTVVPLALLRHNPEYLRGSNNKILVLEPRRVAAKGAARRMAASLRQNVGGT 65 Query: 80 VGYRMRAQNC-----------VGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHER 128 VGYR+R V TR+EVVTEG+L R +Q DPEL GVG V+ DEFHER Sbjct: 66 VGYRVRLDTKARMGDGGGGCGVSAATRIEVVTEGILLRRLQHDPELEGVGAVVFDEFHER 125 Query: 129 SLQADLALALLLDVQQGLRDDLKLLIMSATL---DNDRLQQMLPEAPVVISEGRSFPVER 185 +L AD+ALAL DVQ+ R DL+L++MSATL DR P+V+SEGR +PV Sbjct: 126 NLDADVALALCADVQRLARPDLRLVVMSATLGGGLGDR-AGSNRGVPLVVSEGRCYPVTT 184 Query: 186 RYLPLPAHQR---FDDAVAVATAEMLRQ----------ESGSLLLFLPGVGEIQRVQEQL 232 ++L P + AVA A LR G +L+F+PGVGEI+ + L Sbjct: 185 KHLGRPDATERGALERAVADAVTMALRDGGAAESGDDGVGGDVLVFVPGVGEIRN-CDWL 243 Query: 233 ASRIGSDVL-LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 +R+ ++ + L+G ++ ++Q++ + R+V+L+T IAE+S+TI+G+ VVD Sbjct: 244 QTRLKRRMVSIMCLHGNMAPDEQQQGNSARERRRRRVILSTPIAESSVTIDGVTAVVDSG 303 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R R+DP T + RL T R+S+AS QR GRAGR PG L ++ A SEPE Sbjct: 304 LRRAPRYDPSTAINRLETIRISEASAEQRRGRAGRTAPGRCYRLWSERD--SLPAVSEPE 361 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSAQGQ 409 IL +DL+ +EL WG D + + WLD PP + A + LL LGA+E R + G+ Sbjct: 362 ILTADLAPTALELALWGSPDGSGLPWLDPPPADLMEAGRELLLDLGAVEAGVGRPTPHGR 421 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL-EEPPRMGN-------SDLGVAFSRN 461 +A LG PR ++ + A AA +A +L E + +D+ + Sbjct: 422 LLARLGVHPRWGHAVLRGASQSCAELAAVVATMLGSERDVLRGGGGGPRSADIMLRLEAL 481 Query: 462 QPAWQ------QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGR---YQL 512 + S R + L+ L+A A+ DRIA R+ + + + L Sbjct: 482 ARDGELGRGTGAASSAAAFDAAWREQLSREGLVGALVAAAYPDRIAERKDRSNKRAAFTL 541 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLL--------QGSASPDARILLALLVDIDELVQRCP 564 ++G +D L+ E++ + + + I A + + + Sbjct: 542 SSGKAVHTVEDDPLASFEYVAVAEIGGVGPAAAWRRDGGGNDSIRSAAGLSSLAIKRYLS 601 Query: 565 QLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKG-LSV 623 ++Q + + + R+ ++G L + Q A S+D+ A+L G ++ G + Sbjct: 602 DMIQVTACMR--AGAKQVLGRRQKRLGCLVLSEQ-SAPVSDDKAMPALLKGFKEMGGIRA 658 Query: 624 LNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRG-LKSLD 682 ++ + E E R R++C P + D LL + WL PH++G S L Sbjct: 659 VSLSKEVEAWRQRVICTTA-KGLAALPDLSDTGLLNSAAKWLAPHLSGARSKSHNLPPPP 717 Query: 683 IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPT 742 A R L+ W +QQ +++E P H +PTG+R + Y D P + ++QE+FG P Sbjct: 718 GLDARRSLVPWELQQLVEAEAPTHLMLPTGTRALVDYSGDT-PCVRCKLQEVFGLPDTPR 776 Query: 743 IAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 +A GR+PL LELLSP +P +T DL+ FW+ +Y +V+K+++GRYPKHVWP+DP Sbjct: 777 LAGGRIPLTLELLSPGGQPAAVTSDLASFWRNSYPDVRKDLRGRYPKHVWPEDP 830 >UniRef50_A7BE71 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE71_9ACTO Length = 866 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 305/862 (35%), Positives = 438/862 (50%), Gaps = 67/862 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQ----LLAHPGINGKIILLEPRRL 59 LPV L ++ A +++AP G GK+T LP L H G++++ +PRR+ Sbjct: 14 LPVTRALSDIAAAARPGGCAVITAPPGTGKTTLLPPAVAVALAQHDAAAGRVLVTQPRRV 73 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A LL E+ G VGY +R + V TR+E+VT GV R +QRDPEL GV Sbjct: 74 AARAAARRIARLLGEEAGGQVGYSVRGDSRVSERTRVEMVTPGVALRRLQRDPELPGVSA 133 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-----PEAPVV 174 +I+DEFHER L DLALA LD + LRDDL + + SATL+ R L E +V Sbjct: 134 LIIDEFHERDLDTDLALAFALDARSALRDDLFVALTSATLEASRTVDFLRASTGEEPALV 193 Query: 175 ISEGRSFPVERRYLPLP---------------AHQRFDDAVAVATAEMLRQESGSLLLFL 219 G FP+E RY P P + + VA E + GS+L+FL Sbjct: 194 DIPGDVFPLELRYAPPPRGVEAVGAIGDERVGVRREYLAHVARTVEETVAATEGSVLVFL 253 Query: 220 PGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSL 279 PGVGEI+ V+ L R+G D+ + L+G LS +Q +A+ PA R+V+L+T+IAE+SL Sbjct: 254 PGVGEIETVRGNL--RLG-DIPVLALHGQLSAAEQDRALSPASG--RRVILSTSIAESSL 308 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 T+ G+ +VVD R RFD L+ L+T + A + QRAGRA R PGI++ ++ Sbjct: 309 TVPGVSVVVDAGLAREPRFDAGRSLSSLVTVPAALARLEQRAGRAARTGPGIAVRVMDAV 368 Query: 340 QAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL 399 R AQS P I DL+ ++++ WG ++S LD PP AA + L LGA+ Sbjct: 369 DVARRPAQSAPGIATQDLTDARLQVVSWGTP-VEELSLLDAPPAGTWEAAGQRLSSLGAV 427 Query: 400 EG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGV-- 456 + +A G+ +A+L +P L L+++ A+ AA+ A+L E R+ +DLG Sbjct: 428 DEAGAATALGRTLASLPLEPPLGRALLASSALLGASKAARFVALLSEDLRVPGADLGALE 487 Query: 457 -----------AFSRNQPAWQQRSQQLLKRLNVR-------------------GGEADSS 486 A + Q A + ++ L+RL R G Sbjct: 488 RRLGRGGASGAAGTHAQAARVKDTRARLERLAQRLPASAPDDALASVVTERQKGSRTRED 547 Query: 487 LIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDA 546 +A A A+ + IARRR Y LA G+GA L L EWL + + AS A Sbjct: 548 ELALTCALAYPEWIARRRAGSAAYILAGGVGAELPQGSPLEGQEWLAVASIDRAPASRHA 607 Query: 547 RILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSED 606 RIL A+ + ++ + L++ D +G L A R +G + +K P + SED Sbjct: 608 RILAAVPLSEEDALAAGAALLETRTQASID--KGVLTATRTRALGAIPLKSTPASSLSED 665 Query: 607 ELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLL 666 E + + + +GL L W EA LR R+ L WP V DE+L + WLL Sbjct: 666 EAVALVADHLAARGLGDLGWGKEASSLRERMRVLHDVLGN-PWPDVSDEALACSAHEWLL 724 Query: 667 PHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPA 726 P + L ++ + ALR +L W RLD P +P G I + + P Sbjct: 725 PWAKRLAQGGSLSNVSMLDALRSMLPWPDAARLDELAPEKMPIPAGGTRPIDWSGAH-PV 783 Query: 727 LAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGR 786 L +R+Q+ FG P + GRVPLVL L PA RP +T DL+ FW G YR+V+ +++GR Sbjct: 784 LTLRVQQAFGWTDTPRLVDGRVPLVLHLTDPAGRPAAVTSDLTSFWAGPYRDVRAQLRGR 843 Query: 787 YPKHVWPDDPANTAPTRRTKKY 808 YPKH WP+DP + PT R K+ Sbjct: 844 YPKHPWPEDPLHAEPTNRAKRR 865 >UniRef50_Q6MIP3 Helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIP3_BDEBA Length = 847 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 264/851 (31%), Positives = 424/851 (49%), Gaps = 58/851 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ + +PE+ + L ++++A GAGK+T LP LL + K+I+LEPRR+AA Sbjct: 8 LPIDSFVPEIQSLLKNGQNLVITAAPGAGKTTRLPPALLQVT--SKKVIVLEPRRMAAIA 65 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A R+AE + G+ +GY++R N TRL +TE +L R + DPELS V LVILD Sbjct: 66 AAHRIAEEQGWQVGEEIGYQVRFANKTSNKTRLVFMTEALLARQMIDDPELSDVELVILD 125 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERS+ DLAL LL ++Q+ R D+K+L+MSATL+ +++ L + P+V G+ F + Sbjct: 126 EFHERSMHVDLALGLLRELQELGR-DIKILVMSATLEAEKIASYLGDCPIVSVPGKLFEL 184 Query: 184 ERRYLPLPAH----QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS- 238 + RY +F DAVA + Q +L+FLPGVGEI R ++ L S S Sbjct: 185 DVRYQKGSQQLQTFPQFFDAVAQTVKDAQLQTRHDILVFLPGVGEIDRAKDALQSWADSK 244 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 ++ L PL+G+L+L DQR+A+ Q ++V+L+TNIAE+S+TI+G+ V+D + + Sbjct: 245 NIELVPLHGSLNLEDQRRALKKTSQ--QRVILSTNIAESSVTIDGVNTVIDSGLAKNMKQ 302 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 D RTG +RL R+S +S QR+GRA R PG++ + K EI + DL+ Sbjct: 303 DHRTGFSRLELGRISLSSAIQRSGRAARQFPGVAYRMWNKMDELSFGKSEVAEIQRVDLT 362 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGND 417 L+ L G +D SW ++P V + A R L++ GA++ +++A G+K+ Sbjct: 363 ESLLFLSAQGVTDFDSFSWFEKPQKVAIENALRYLRISGAVDDNNKITALGRKILHFPLP 422 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG------------NSDLGVAFSRNQPAW 465 RLA +++ + A+++AA+L+E + DL Sbjct: 423 VRLAKLMLVGMDLGAIELASEMAALLQERDILRRESVASFLGDNLECDLSARLEVLHQFR 482 Query: 466 Q--------------------QRSQQLLKRLNVRGGEADSSL--------IAPLLAGAFA 497 Q ++ Q+L KRL ++L +L A+A Sbjct: 483 QNKKAPAGSAYFSLQTVDQAARQIQELAKRLQKSSDTPTAALKKDQQLALTKKILLTAYA 542 Query: 498 DRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDID 557 DR+ RRRG+ R + G G L + E+ A ++GS+ + + LA + D Sbjct: 543 DRLCRRRGKTERALMVGGRGVKLQNETLVKNSEFFAALNGVEGSSDAETMVSLACGAEKD 602 Query: 558 ELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIR 617 ++ + ++ V + + +G + L ++ L+ S E+ + + + Sbjct: 603 FVLDHFRNDIVKTRDVSFVEEKGQFFTREYRSLYGLPLEEPSLSPASATEVSEKLPQILA 662 Query: 618 DKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRG 677 DK VL RL + + +D E L G ++ Sbjct: 663 DKFDLVLKTNEALSHWWERLQFLQQQ----EELNLDIEKLKVEA---FTQACMGESKMQA 715 Query: 678 LKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGE 737 + D+ +L L E+P VP+GS+I + Y D PP L VR+QE+FG Sbjct: 716 VMEKDLCFFFESVLPPETANTLRREIPDRIEVPSGSKIRVIYPSDKPPYLEVRIQEVFGL 775 Query: 738 ATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 P + + +P+ L LL P RP+Q+T +L FWK Y EV+KE++ +YPKH WP+DPA Sbjct: 776 MQTPKVYKQTIPITLHLLGPNFRPVQVTSNLESFWKNGYPEVRKELRIKYPKHQWPEDPA 835 Query: 798 NTAPTRRTKKY 808 + P + ++ Sbjct: 836 DGIPEAKGRRR 846 >UniRef50_B2UM09 Helicase ATP-dependent domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM09_AKKM8 Length = 861 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 262/854 (30%), Positives = 425/854 (49%), Gaps = 66/854 (7%) Query: 1 MSSLPVAAVLPELLTALD-CAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRR 58 SSLP+ + EL+ AL +P++LL APTG+GKST +P + G G I++++PRR Sbjct: 3 FSSLPIEEIRGELMEALRVPSPRILLKAPTGSGKSTGVPPMMDDAGLGDRGLIVVVQPRR 62 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +AAR +A+ +A L + G VGY +R + + TR+ VT+G+L R + P L GV Sbjct: 63 MAARLLARHVARLRGVELGKEVGYAVRFERYISSRTRIAYVTDGMLERWLTEWPSLEGVS 122 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-APVVISE 177 V+ DEFHERSL DL+L +LD+Q+G R DL +++MSATL+ L++ + V+ ++ Sbjct: 123 AVVFDEFHERSLSGDLSLGRVLDLQEGPRRDLAVVVMSATLEISGLREYMGGSCRVLEAQ 182 Query: 178 GRSFPVERRYLPLP---------AHQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQR 227 GR +PVE Y A + A E +R++ G +L+F+PGV EI++ Sbjct: 183 GRQYPVEVVYRAPRLVSDGRGRVAPPPIWEQAADVVREAVREDDCGDVLVFMPGVYEIRK 242 Query: 228 VQEQLASR-IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 286 E LA + S + PLYG+L+ Q A+ + +V+++TN+AETSLTIEG+R Sbjct: 243 TVELLAGKPWMSGRDVFPLYGSLAPEQQNCAVER--GDIPRVIVSTNVAETSLTIEGVRT 300 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 VVD R + +DP G+ L ++S+AS QRAGRAGR+ PG L ++ + R Sbjct: 301 VVDSGLVRRSGWDPYRGMDTLHLVKISKASAAQRAGRAGRVAPGRCFRLWSEAEQARKED 360 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LS 405 PE + DL+G ++ L WG + P WLD P + + A LL LGA E + L+ Sbjct: 361 FDPPECFRVDLAGAVLNLAAWGVTVPENFRWLDVPAPLVMQRAVNLLAALGATEEDGSLT 420 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDL------GVAFS 459 G++M A PRLA ++V+ +++ A A +AA+++ L ++ Sbjct: 421 DTGKRMTAFPLPPRLARLMVAGQDEQCAVELAAVAALMQGEGVAVKGGLNDHLRDSADYT 480 Query: 460 RNQPAWQQRSQQL--------LKRLNVRGGEADSSLIA---------------------- 489 Q W+ + + R + A + +A Sbjct: 481 DFQAEWRAVEKAVDAGFGAAACTRWGISSRGAREAWMAYRQLLSVGSRGKARETPGPDFT 540 Query: 490 -------PLLAGAFADRIARRRG-QDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGS 541 + +FAD + R G ++A G+G L + + E +A + + S Sbjct: 541 AARPAVVRAMIESFADHVGVRNGVAANTCRMAGGVGGRLAEGSVVFQGEHFVAAEVAELS 600 Query: 542 ASP-DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 + R+ L+ ++L P+ + +D A ++ R+L G L ++ + Sbjct: 601 GKAVETRVGRCTLIAPEDLRSIWPERFSCGEEAVFDAALRRVRLHRKLMYGDLVLEDRDR 660 Query: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 + + + D L ++ W EQ RL + W+PE + P +E L A Sbjct: 661 GDAPPELAAPVLAEKVVDGTLKLVKWNDAVEQWIRRLNGLSVWMPELELPRFSEEDKLVA 720 Query: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 + G + +K +I LR L + LD P T+P G +RY Sbjct: 721 ISL----VCEGAVGYKDIKEREIIPVLRDWLSGWQAKALDDYAPVSLTLPNGQHAKVRYG 776 Query: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 ED+ P +++ +Q +FG A +P IA G VP+++E+L+P+QRP Q+T L FW+ Y +++ Sbjct: 777 EDSSPVISLTVQRLFGVAVSPRIANGAVPVIVEVLAPSQRPWQVTGSLESFWRNGYGQMK 836 Query: 781 KEMKGRYPKHVWPD 794 K++ GRYP+H WPD Sbjct: 837 KDLAGRYPRHRWPD 850 >UniRef50_B4S0B6 ATP-dependent helicase HrpB n=2 Tax=Alteromonas macleodii RepID=B4S0B6_ALTMD Length = 894 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 306/895 (34%), Positives = 435/895 (48%), Gaps = 93/895 (10%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 S LP ++ L ++ +++ AP GAGKST + L + GKI+L++PRR+ Sbjct: 5 FSHLPAYELVTPLKESVAANN-IIIGAPPGAGKST-VLPLSLLQSSLKGKILLMQPRRVV 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 RN+A LA+ LNE G+TVGYR++ ++ P TRLE++TEGVLTRMIQ+DPEL+ V + Sbjct: 63 VRNLADYLAKQLNESVGETVGYRIKGESKTSPATRLEIITEGVLTRMIQQDPELADVTAI 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVIS- 176 + DEFHERS+ +D LAL L+VQ GLRDDL+L++MSATLD LQ +L E PVV Sbjct: 123 VFDEFHERSIHSDFGLALALEVQTGLRDDLRLIVMSATLDIAPLQALLNEFSALPVVNLN 182 Query: 177 -EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +GR FPV+ RY + + + G +L+FLPG G I V ++ Sbjct: 183 TQGRVFPVDIRYTRDVQAYELVPKTCNIIKQAVSEHDGDILVFLPGRGSINAVAREIKGL 242 Query: 236 IGS-DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 S D+ + LYGALS + Q+ AI P P G RKV+L+TNIAETSLTIEG+ +V+D E Sbjct: 243 AESADIAIHMLYGALSKSAQQDAIAPDPHGRRKVILSTNIAETSLTIEGVTVVIDSLWEN 302 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 A++ P + +T L QR+SQAS TQRAGRAGR+ GI L +K ER A + +I + Sbjct: 303 SAQYHPSSDITALTQQRISQASATQRAGRAGRVMAGICYRLCSKSSFERLAKHNAAQIEK 362 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER------LSAQG 408 DLS L++ WG + P ++ L +P L +A++ L L A+ + ++ G Sbjct: 363 EDLSSFLLDTYAWGST-PDTLALLTKPTPAQLNSAQQKLHRLHAVGFDDATGQGSITPYG 421 Query: 409 QKMAALGNDPRLAAMLV---------SAKNDDEAATAAKIAAILEEP--PRMGNSDLGVA 457 +++A L P LA +L+ S K ++ AA L E G + + A Sbjct: 422 RQVAQLPCQPHLAHLLLTVKSGIEGLSPKENNALKHAAVFVVALSESNMSASGATSVVDA 481 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEADSS--------------LIAPLLAGAFADRIA-- 501 + + + Q R + + +A AF ++ Sbjct: 482 LLQVSGNARNQLIQQASRYVRYVTSSTEREQSFKADINALEEWALGLCIAIAFPLQVGYL 541 Query: 502 RRRGQDG------------------------RYQLANGMGAMLD--------ANDALSRH 529 R R G Y+LA+G GA L DA Sbjct: 542 RVRATSGNNASGSGACSKNATAGVKQSSQLLEYKLASGKGAELATSNSSAFNHGDADDSS 601 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 WL I LA V L P+ + + + G ++A R Sbjct: 602 PWLAVLEGQL--IKNTVVIRLAQAVPESYLRLAFPKAFSEKRSAVLNRDTGQMEARRSTG 659 Query: 590 IGQLTVKVQPLAKPS--------EDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAA 641 +T+ P++ + + + + LS Q R+ A Sbjct: 660 FFAITLNSVPVSGQEKIRDNEYWDGAVTEGWFAYLDALPLSQWPLCDADWQWWRRVALAG 719 Query: 642 KWLPEYD--------WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW 693 K + D WPA L+ + L + +++ L+ L AL L W Sbjct: 720 KLNLQQDKAFDKPDAWPA-SLSELVHKAKESLSAALKSCKNIKSLQQLPWKTALNNGLSW 778 Query: 694 GMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLE 753 Q L + LP H ++PTG A+ Y E LAV+M EM+ + TIA GRV +V E Sbjct: 779 PQQDALATHLPTHVSIPTGREAALDYRESGDVVLAVKMPEMYSQNGPLTIAGGRVTVVCE 838 Query: 754 LLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LLSPA RPLQ T DL FW+G+Y+E+QKEMKGRYPKH WPDDPAN PT +TKK Sbjct: 839 LLSPAGRPLQTTSDLGAFWQGSYKEIQKEMKGRYPKHYWPDDPANAVPTSKTKKR 893 >UniRef50_Q2G8M4 ATP-dependent helicase HrpB n=5 Tax=Sphingomonadales RepID=Q2G8M4_NOVAD Length = 817 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 317/820 (38%), Positives = 454/820 (55%), Gaps = 25/820 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MS LP+ +VLP+LL AL +L AP GAGK+T + LLA P G++I+L PRR+A Sbjct: 1 MSDLPIHSVLPDLLAALRQRESAVLIAPPGAGKTTAVAPALLAEPWCTGQVIVLSPRRVA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+AE+L E+ G T+GY R + TR+ VVTE + I DPELSGV V Sbjct: 61 ARAAAERMAEMLGEEAGGTIGYVTRLDSRRSARTRVLVVTEAIFVATILDDPELSGVSAV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DE HER L +DL LAL ++ Q LR+DL++++MSAT+D R +L +APV+ SEG++ Sbjct: 121 LFDEAHERHLDSDLGLALAVEAQGVLREDLRIVVMSATIDGSRFAALLGDAPVIESEGKA 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 P+ R+L + + A+A A R+E G +L FLPGV +I+R E LA R+ Sbjct: 181 HPLAIRWLGARPDAKVEVAMASAIQTAWREEEGDILAFLPGVAQIERTAETLAERLPQ-A 239 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L+ PL+G + QR AI P G R++VLAT IAETSLT++G+ +VVD R A FD Sbjct: 240 LILPLHGQVEPGGQRAAIRRDPSGRRRIVLATAIAETSLTLDGVSVVVDAGLSRRAEFDK 299 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 G+TRL+T R SQAS QRAGRA R PG++ L + A PE++ SDL+ L Sbjct: 300 AAGVTRLVTTRASQASAAQRAGRAARQGPGVAYRLWEEASHAGRPAFDPPEMVTSDLAPL 359 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 + L QWG DPA M+WLD PP + AA+ L LGAL+ + R++ G+ MA L +P Sbjct: 360 ALTLAQWGAGDPATMAWLDPPPAAAMAAAQGALAALGALDKDRRITTHGRAMAKLPMEPA 419 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMG-NSDLGVAFSRNQPAWQQ----------R 468 LA ML+ A +A AA++A +L+E G DL R R Sbjct: 420 LAHMLLFAAERGQAEEAARLALLLQERGLGGRGEDLARRLDRWASERGSRAEASRKLAGR 479 Query: 469 SQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL-ANGMGAMLDANDALS 527 ++ +RL R G A LLA AF DRIAR R G L + G G LD L+ Sbjct: 480 WARMAERLAPR-GRAGEVPTGVLLAEAFPDRIARARSVSGEEWLSSGGRGYRLDPASPLA 538 Query: 528 RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRR 587 WL+ + ARI A ++ ++ + V++ T+ W+ A G ++A Sbjct: 539 TARWLVIGDAQ--GEAKGARITAAAALEESDVTRHLAHRVEERHTLSWNAADGRVEARLE 596 Query: 588 LQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 ++G + + P P + + +++ +R +GL +L A+ L +R A Sbjct: 597 RRLGAIVLARVPDPAPDAEAAARLLIDEVRSRGLDLLPLGEGAKALLVRAGHAGLAALSD 656 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHY 707 +LL LE WLLP + G L + + ++ AL G LDW +Q LD PA + Sbjct: 657 A-------ALLDDLEAWLLPLVKGRRDLA-VGAGRLHDALLGRLDWNERQMLDKLAPAEF 708 Query: 708 TVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRD 767 P G+ AI Y + P + +R+Q +FG +P + Q PL+L L SP +P+Q T D Sbjct: 709 RSPAGTSHAIDYGHEGGPCVELRVQALFGIDRHPCVGQPPRPLLLSLTSPGGKPIQTTAD 768 Query: 768 LSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 L FW+G++++V K+MKGRYPKH WPD+P + P+ +TK Sbjct: 769 LPGFWRGSWKDVCKDMKGRYPKHRWPDEPWSEDPSLKTKN 808 >UniRef50_C6MXH7 Helicase n=2 Tax=Legionella RepID=C6MXH7_9GAMM Length = 866 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 256/863 (29%), Positives = 408/863 (47%), Gaps = 69/863 (7%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LP+ + ++L + ++++A GAGK+T LP +LL+ + GKI++LEPRR+A+ Sbjct: 16 THLPIDDFIDDILQKVTSHTNLVITAAPGAGKTTRLPPELLS--VVAGKILVLEPRRMAS 73 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 A R+AE N G+ VGY++R N TRL +TE +L R + PEL V +VI Sbjct: 74 IAAAHRVAEENNWLVGEEVGYQVRFVNKTSHKTRLIYMTEALLARHMIHHPELDDVDIVI 133 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDEFHERSL DL L L+ ++Q+ L +K+++MSATL+ +++ + L PV+ G+ F Sbjct: 134 LDEFHERSLYVDLTLGLIRELQE-LGHHIKIVVMSATLEAEKIAEYLGNCPVISVPGKLF 192 Query: 182 PVERRYLP----LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS-RI 236 + RY L +F + ++ E RQ +L+FLPG EI+R + L + Sbjct: 193 ELTVRYQKSTQLLTPQYQFYEHLSQVIKEAQRQTDKDILVFLPGAREIERAKGNLLDWKE 252 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + + L+G+L L QR A+ + ++++LATNIAE+S+T++G+ V+D ++ Sbjct: 253 SKKIEVITLHGSLPLEAQRIALQKSSA--QRIILATNIAESSVTLDGVDTVIDSGLVKIM 310 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 + D RTG +RL R+S AS QRAGRA R PG+ + + + PEIL+SD Sbjct: 311 KQDLRTGFSRLEISRISLASAIQRAGRAARQFPGVCYRMWNQHDESSFVKSNIPEILRSD 370 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALG 415 LS L+ L S+ SW ++PP VN+ A LQ GA+ L++ G+++ Sbjct: 371 LSDSLLFLANQHISNFQNFSWFERPPCVNIERATFSLQAAGAIKNNNELTSIGRQLLDFP 430 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG------------------------- 450 RL +L++ ++ AAKIAA+L+E + Sbjct: 431 LPLRLGRLLIAGIENNCIDLAAKIAALLQERDILRKEMANHFQADHFECDVAPRLKILNK 490 Query: 451 ----NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIA-----PLLAGAFADRIA 501 S F+ Q Q Q L ++ E + L LL +F DR+ Sbjct: 491 FLKDGSSHEGHFTILQTVAQSYQQILDLAKKLKKAEPPAYLEEDEARQLLLMLSFGDRLC 550 Query: 502 RRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQ 561 RRR R + G G L + R E+ IA + S + I A ++ + L + Sbjct: 551 RRRKNSDRALMVGGRGVKLSDRTLVKRSEFFIALNGFEESGEAETLINQASGINKEFLFK 610 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 + + + ++ + + L ++ + + + + + + + D Sbjct: 611 HFSDNIIKKRDIIFEAEKSQFYQREFKTLWDLPIEEPNFSLATSVHVAEKLPDILTDNWA 670 Query: 622 SVLN-------WTAEAEQLRLRLLCAAKWLPE-----YDWPAVDDESLLAALETWLL--P 667 S L W + LR + + +D A+ L Sbjct: 671 STLKKNENLHEWYQKIIFLRFHKALIPPHIQDELESLFDGDALKKSFCLTVFRQACFGES 730 Query: 668 HMTGV--HSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPP 725 MT V +L L+I + LR +L +ELP VP+GS I I Y P Sbjct: 731 KMTFVLKKNLVYFFELNISETLRSIL--------QTELPNRLKVPSGSMIPIHYSTVEHP 782 Query: 726 ALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKG 785 L VR+QE+FG P I V +VL LL P RP+Q+TRDL FW+ Y E++KE++ Sbjct: 783 FLRVRIQEVFGWEETPKILFQSVSVVLHLLGPNFRPVQVTRDLESFWQNGYSEIRKELRI 842 Query: 786 RYPKHVWPDDPANTAPTRRTKKY 808 RYPKH WP +PA+ + + Sbjct: 843 RYPKHQWPLNPADGIAHAKGSRR 865 >UniRef50_A3WLA9 Helicase, ATP-dependent n=1 Tax=Idiomarina baltica OS145 RepID=A3WLA9_9GAMM Length = 832 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 282/834 (33%), Positives = 437/834 (52%), Gaps = 34/834 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING----KIILLEP 56 M +LP+ A+ LL A V+ AP GAGKST LPL LLA ++G I+LL+P Sbjct: 1 MLNLPIDAIKLSLLERCPGARVVI-EAPPGAGKSTALPLHLLASSALHGDNEGLIVLLQP 59 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RR+AA ++A LAE LNE G T+GY +R + +TRL V+TEG+ TR +Q+DPEL Sbjct: 60 RRVAALSIANFLAEQLNESVGKTIGYSIRGDSKRSQDTRLMVITEGIFTRWLQQDPELHE 119 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP---- 172 + VI DEFHER++ +D L+ LR +L L+IMSATL + L L A Sbjct: 120 ITTVIFDEFHERNIHSD-LSLGLVLDLLPLRPELNLIIMSATLPGEALTTWLTNATEQRF 178 Query: 173 -VVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 ++ + + F ++ Y P +R+ + E + +L+FLPG+ EI+ V+++ Sbjct: 179 ELLSVDVKRFDLDVHYRPPSRLERWLEESVPVIVEAFQHARKGVLVFLPGMREIKYVEQR 238 Query: 232 LASRI-GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 L + G DV + L+G+L+ + Q++ I ++VVLATNIAETSLTIEGI VVD Sbjct: 239 LQETLIGEDVSI--LHGSLTADVQQQVIRAGAS--KRVVLATNIAETSLTIEGIDTVVDT 294 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 +ER + + P+ +RL T +++++ QRAGRA R +PG + L +++ +R AA S P Sbjct: 295 GRERQSVYLPQYRDSRLTTAMIAKSNSEQRAGRAARQQPGRAYRLWSEDTQQRLAAYSPP 354 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQK 410 ++ +L+ L++++ WG ++ +++W P + AAK L +G L+ +RL+ GQ+ Sbjct: 355 DVATQELTDLIVQVKAWG-TEVEELNWFTPPDSALVEAAKDTLTDMGLLKEQRLTLAGQE 413 Query: 411 MAALGNDPRLAAMLVSAK---NDDEAATAAKIAAILEEPP-RMGNSDLGVAFSR------ 460 +A G D RL+ + + A+ + + A+ A E+P R NSD ++ + Sbjct: 414 VAGFGTDIRLSCIALHARGKLPEGKQRALAQWLATYEQPDKRFTNSDSVISAQQHFRNAT 473 Query: 461 NQPAWQQRSQQLLKRLNV-RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAM 519 W +R + ++ R G I + FADRIA + D + Sbjct: 474 RGSIWWKRFAYWCQVFSIERQGATQFEDIEEAVLFGFADRIAYQDRTDEAQLASGARIYD 533 Query: 520 LDANDALSR-HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 L + + IA L R++ L +D L+ + + + W Sbjct: 534 LQNSFGNRNNSSYFIATQLSLSEKQRHNRLIGYLSIDKHRLLSHPAVGLVEREVYNWTKD 593 Query: 579 QGTLKAWRRLQIGQLTVKV-QPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 L G L + Q A + D L+ A+ + +R +GLS + W + L RL Sbjct: 594 GERLIKTSEQMCGALVLDRHQEPAALTRDALNDALTHWLRAEGLSAIGWNSGTAGLLARL 653 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 + PE A + LL L W LP+ G+ SLR L+ +AL L + QQ Sbjct: 654 QFLYRARPELFNIAPYETDLLEHLADWALPYWHGMTSLRQLRGWQPNEALLNTLTYEGQQ 713 Query: 698 RLDSELPAHYTVPTGSRIAIRY----HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLE 753 LD P H+ P+G R+ I Y + P +A+++QE FGE +PT+ G+V + ++ Sbjct: 714 LLDKWCPTHWLAPSGRRVIIDYPSGTESERSPKVAIKLQEAFGEVASPTVLNGQVAIAID 773 Query: 754 LLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LLSPA R LQ T DL+ FW+ Y+EV+KEM+GRYPKH WPDDP + T +TK+ Sbjct: 774 LLSPAGRLLQRTHDLASFWRSGYQEVKKEMRGRYPKHPWPDDPTHAIATVKTKR 827 >UniRef50_D1Y978 ATP-dependent helicase HrpB n=3 Tax=Propionibacterium acnes RepID=D1Y978_PROAC Length = 838 Score = 676 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 291/834 (34%), Positives = 425/834 (50%), Gaps = 47/834 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LPVAA E+ TAL V++ AP G GK+T++P L +G++I+ +PRR+AA Sbjct: 19 AGLPVAAYRDEITTALHGGRAVIV-APPGTGKTTFVPP--LVASRCSGRVIVTQPRRVAA 75 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R A+RLA L +PG+ + + ++ +T++E VT GVL R + DP+L+GV V+ Sbjct: 76 RAAARRLAALTGTRPGEFASHTVHGESTTTRDTKVEFVTTGVLLRRLLSDPDLTGVDAVV 135 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISEG 178 LDE HER L ADL +A++ +V Q LRDDL ++ MSAT+D+ L APVV Sbjct: 136 LDEVHERHLDADLVVAMVCEVAQ-LRDDLTIVAMSATVDSSGWAAFLGGVEPAPVVEVAS 194 Query: 179 RSFPVERRYLPLP---------AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 +E + P + + V + R GS L+F+PG E+ V Sbjct: 195 ALHELEVEWAPAAGAAVESRGVSREFLGHLGTVTVDALDRHTEGSALVFVPGAREVDHVV 254 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 L SR+ + + L GA+S +Q A+ P +R+V+++T +AE+SLT+ G+RLVVD Sbjct: 255 ADLRSRLA-GIDVVGLSGAMSAREQDHAL-SDPGNVRRVIVSTAVAESSLTVPGVRLVVD 312 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R R D G+T L+T R S+AS QRAGRA RL PG+++ + + A Sbjct: 313 SGLSREPRLDRGRGMTGLVTVRESRASAVQRAGRAARLGPGVAVRCLRAQDWAGMNADPT 372 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PE+ +DL L+ L WG M+ P + AA+ L+ LGA++ E R++ +G Sbjct: 373 PEVDHADLVASLLSLAVWGSPRGEGMALPTPLPQDRVAAAEEELRDLGAVDAEGRITVRG 432 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPA---- 464 + +A DPRLA L + A+IAA+L G DL + + + Sbjct: 433 RHLATFPLDPRLARALTDGAAIVGSRRCAEIAAMLGLED--GQVDLVGQWRQLRSGRHPE 490 Query: 465 ---WQQRSQQLLKRLN--VRGGEADSSLIAPLLAGAFADRIARRRGQ-DGRYQLANGMGA 518 W++ + +L + +N D +A +++ A IAR RG+ Y LA G G Sbjct: 491 AVMWRREADRLARLINDVPPTDITDDDAVATVVSLARPGWIARSRGEGSASYLLACGTGV 550 Query: 519 MLDANDA--LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWD 576 L N L WL + A I A+ + ++ ++ TV WD Sbjct: 551 DLPRNCPPGLLGQPWLAVA--RTSRITSGALIRAAVPLSESAALESGEAMLTSDTTVTWD 608 Query: 577 DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLR 636 G ++ R L++G + + P+ +P L +R GL V + T E LR R Sbjct: 609 --GGKVRGRRVLRLGAIELSSTPV-RPDPVRARHVALEAVRSGGLDVASLTKNGESLRRR 665 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 L A + + WP V DE+LLA E WL + +L + D LRGLL W Sbjct: 666 LALAHRVFGD-PWPDVSDEALLARAEEWL-----DLDALAAGRGSDATSGLRGLLGWRES 719 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNP---PALAVRMQEMFGEATNPTIAQGRVPLVLE 753 RLD +P TVP+GSRI I Y E P LAV++QE FG A PT+ GRV +VL Sbjct: 720 ARLDEVVPETITVPSGSRIRIDYPEPGSDTSPVLAVKLQECFGWADGPTVCDGRVRVVLH 779 Query: 754 LLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LLSPA+RPL +T DL+ FW Y V+ E +GRY KH WP+DP PT+RT + Sbjct: 780 LLSPARRPLAVTDDLASFWASVYPAVRVENRGRYSKHPWPEDPMTATPTKRTNR 833 >UniRef50_UPI000185C193 ATP-dependent helicase HrpB n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C193 Length = 805 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 258/824 (31%), Positives = 392/824 (47%), Gaps = 50/824 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LP A+ L L A+ ++ AP G GK+T +P + + G+I++ PRR+A Sbjct: 14 AGLPFASQLASLADAVRDHDV-VVQAPPGTGKTTLVPPAV--ANTLGGRIVVTAPRRVAV 70 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+ A+RLA+L K G+ VGY +R + TR+E VT GVL R + RD ++ V+ Sbjct: 71 RSAARRLAQLSGTKLGEEVGYSVRGDSRTSRATRVEFVTPGVLLRRLLRDGDVDA-SAVL 129 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISEG 178 +DE HER L DL LA++ D++ +RDDL+L+ MSAT+D + +L AP+V +E Sbjct: 130 IDEIHERGLDTDLVLAMVRDLRD-IRDDLRLVAMSATVDAPKFAALLGGSTPAPIVAAEA 188 Query: 179 RSFPVERRYLPLPAH-------QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 FP++ RY P P F VA + + + +G +L+FLPG+ E++R Sbjct: 189 EIFPLDIRYAPFPQRLDARGVTDDFLQHVAAQASTLTEEAAGDVLVFLPGIREVERCAGY 248 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 +A S+V + L+G S +Q + G R+V+++T IAE+S+T+ G+R VVD Sbjct: 249 IAD--SSEVAVLTLHGQQSSEEQDRVFRRQADG-RRVIVSTAIAESSVTVPGVRAVVDAC 305 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R R D G + L+T +Q+S QRAGRAGR PGI + +++ + A PE Sbjct: 306 LARGPRLDIARGFSGLVTSSCAQSSANQRAGRAGREGPGIVVRCVSQSEFASFPAWPAPE 365 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQK 410 I +DL+ L++ WG + LD PP + AA +L LGA++ ++ G+ Sbjct: 366 IEVADLTQALLDAAAWGTPGMQGLKLLDAPPPHHAEAANHILAGLGAVDEAGSITELGRT 425 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQ 470 +A L PR+ L++A A++ + + A Q R Sbjct: 426 LATLPVHPRMGRALLTAT------------AMMPQHTDAIARTVEKLTDARGLAKQVRRI 473 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRH 529 +L S + A + A A+ D I RRR Y G A L L Sbjct: 474 ELET--ETPANLLPSDIPALVTALAWPDFIGRRRSANSDEYLFTGGTAAELARGSDLRGQ 531 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 EW+ A + + S A I +D++ + L T QG ++A R Sbjct: 532 EWIAAADISRLSHGR-ALIRTGEAIDLEIAMLAAGHLAHTETTARV--EQGRVRARERDL 588 Query: 590 IGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 +G + + + ++ E + + N + EQLR R+ W Sbjct: 589 LGAIELSSRQVSPTPEQCIAANSAWLADALADASPNLDRDTEQLRRRMAFLYTHRG-SPW 647 Query: 650 PAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTV 709 P V L A E G +LD + LR LL W D +P V Sbjct: 648 PDVSPAGLAAQAELLFA----GELDRPTPPTLD-AEHLRRLLPWPEATDFDRLVPERLEV 702 Query: 710 PTGSRIAIRY-----HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQI 764 P+GS+I + Y E+ LAV++QE FG A P + + P+ + LLSPAQRPL + Sbjct: 703 PSGSKIRLEYPEDPTDEEAQIVLAVKLQECFGLAETPQVLEK--PVTMHLLSPAQRPLAV 760 Query: 765 TRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 T DL FW GAY +V+ EM+GRYPKH WP++P T RTK+ Sbjct: 761 TGDLESFWNGAYAQVRSEMRGRYPKHPWPENPWEEQATARTKRR 804 >UniRef50_A9FJ06 ATP-dependent RNA helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FJ06_SORC5 Length = 907 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 297/908 (32%), Positives = 423/908 (46%), Gaps = 109/908 (12%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRL 59 M LP+ +LP+L AL P V+L AP GAGK+T +P LL G+I++LEPRRL Sbjct: 1 MQPLPIDPILPDLCAALRARPSVVLEAPPGAGKTTRVPRALLDAGFAERGEILVLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+AE L E+ G+TVGY MR + P TR+ VTEGVLTR + D EL GV Sbjct: 61 AARLSARRVAEELGERVGETVGYTMRFEEASSPATRVRFVTEGVLTRRLLVDRELRGVSA 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE--------- 170 V+LDEFHER L D+ALALL +Q+G R DL+L++MSATLD + L Sbjct: 121 VVLDEFHERHLAGDVALALLRRLQRGARPDLRLVVMSATLDAGPIAAFLGGPEAQPAPAA 180 Query: 171 ---------------APVVISEGRSFPVERRYLPLP------------------AHQRFD 197 AP + +EGR F V YLP + + Sbjct: 181 EAERGHDTTSAGASVAPTLRAEGRMFDVAIEYLPSARVSASTHAAGDRRGPAHWGDRTLE 240 Query: 198 DAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLAS-RIGSDVLLCPLYGALSLNDQR 255 VA + +++ + G +L+FLPG EI+R E A+ D+LL PL+G+LS +Q Sbjct: 241 SLVASSVRQLIEEGLDGDVLVFLPGSAEIRRAMEACAAIAKSEDLLLLPLHGSLSAAEQD 300 Query: 256 KAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQA 315 +A+ PA RK++L+TN+AETS+TI+G+ VVD RVA P +GL L +++A Sbjct: 301 RAVRPA--DRRKIILSTNVAETSVTIDGVVAVVDSGLARVAAHAPWSGLPTLRVAPIARA 358 Query: 316 SMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQM 375 S QRAGRAGR PG L L + PEI + DL+ ++EL G +D Sbjct: 359 SAAQRAGRAGRTRPGRCLRLYTRGDLASRPEHEAPEIRRLDLAETVLELCAAGVTDLEAF 418 Query: 376 SWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 WL+ PP L AA+ LL LGAL+ R++ G++M PR A M+V A+ A Sbjct: 419 GWLEAPPAAGLAAAEALLVRLGALDEGRRVTPTGRRMLRFPAHPRQARMIVEAERRGVAC 478 Query: 435 TAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ---------------------------- 466 +AA++ E S R A Sbjct: 479 DGCTLAALVAERDLGAPSGAREPHGRRSDARHSSDLLAALQAFEEADRARFAADRLRWLG 538 Query: 467 ---------QRSQQLLKRLNVRGGEADSSLIAP-------LLAGAFADRIARRRGQDG-- 508 +R+++ L RL A + + + DR+ R R Sbjct: 539 VDPARALTVERTRKQLSRLADHRSAAPPETVEAREIAQRIAILSGYPDRVGRLRRPTSAT 598 Query: 509 -----RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDAR--ILLALLVDIDELVQ 561 LA G A L + + ++A + + S AR + A ++ D L+ Sbjct: 599 GRTGREVVLAAGGTAALSEASVIDEVDLVVAVDIEERSEGRSARTVVRAASAIEADWLLD 658 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAK----PSEDELHQAMLNGIR 617 ++ + W+ A ++ RRL L + A P + + + R Sbjct: 659 LFTDAIRDTTEAAWNAAAERVEVVRRLSYDALVLDEARPAAGAGGPLAEAAARELAAQAR 718 Query: 618 DKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRG 677 KG + LR+ P+ P V ++++LA LE G S Sbjct: 719 AKGWRAFVKGDALDSWLLRVAFVRAHCPDAALPDVGEDAVLATLE----ALCDGRRSFAE 774 Query: 678 LKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGE 737 L+ D+ A++ L + L P +P G R + Y PP+LA R+Q+ FG Sbjct: 775 LRDADLSSAVQASLGPAKARALAELAPESIVLPGGRRARLEYTAGAPPSLASRLQDFFGM 834 Query: 738 ATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 A P +A GRVP+VL L +P QRP+Q+T DLS FW Y + KE++ RYPKH WPDDPA Sbjct: 835 AEGPRVAGGRVPVVLHLCAPNQRPVQVTTDLSGFWARHYPAIAKELRRRYPKHAWPDDPA 894 Query: 798 NTAPTRRT 805 + AP R Sbjct: 895 HAAPPSRA 902 >UniRef50_C7JEP3 DNA helicase HrpB n=8 Tax=Acetobacter pasteurianus RepID=C7JEP3_ACEP3 Length = 855 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 312/850 (36%), Positives = 440/850 (51%), Gaps = 54/850 (6%) Query: 3 SLPVAAVLPELLTALDCAPQV------LLSAPTGAGKSTWLPLQLLAHPGI--NGKIILL 54 LPV VLPEL L P +L AP GAGK+T +P L A + KII+L Sbjct: 16 GLPVQDVLPELCAVLAQNPTTDHPASAILVAPPGAGKTTSVPPVLAAAAWRAPSDKIIML 75 Query: 55 EPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPEL 114 EPRRLAAR AQR+A L+ E+ G VG+R R ++ V TR+EV+TEG+ R + DP L Sbjct: 76 EPRRLAARAAAQRIASLMGEEVGGFVGFRTRLESAVSDRTRIEVLTEGLFLRRLLGDPML 135 Query: 115 SGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVV 174 GV VILDE HERSL ADLALA LD+Q+ LR DL+L+ MSAT + +RL ++ APV+ Sbjct: 136 EGVACVILDEIHERSLDADLALAFCLDLQRTLRPDLRLVAMSATAETERLAALM-NAPVL 194 Query: 175 ISEGRSFPVERRY--LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 SEGR FP+ + +P+ + A A + L + G +L FLPG GEI+RV + L Sbjct: 195 TSEGRMFPLTVHHAKHDIPSLRDIATATATGVRQALAETEGDILTFLPGTGEIRRVMQLL 254 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 G + PL+G L +Q + + P +G R+V+LAT+IAETSLT+ G+R+VVDC Sbjct: 255 ---DGVPATVLPLHGELHPAEQARVLRPGNEGERRVILATSIAETSLTVPGVRVVVDCGF 311 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 RV RFD GL+RL T R+S+A+ QRAGRAGR PG++ L + PEI Sbjct: 312 RRVPRFDAGAGLSRLDTVRISKAAARQRAGRAGREAPGMAYCLWSAHTERALPQHDRPEI 371 Query: 353 LQSDLSGLLMELLQWGC---SDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQG 408 L++DLS ++ W S + DQPP + AAK LL +LGAL+ +++ G Sbjct: 372 LEADLSDFVLATALWADTVGSADTPLPLPDQPPGSAVAAAKELLILLGALDDAGQITKLG 431 Query: 409 QKMAALGNDPRLAAMLV--------------------------SAKNDDEAATAAKIAAI 442 + MA LG PRLAAM++ A Sbjct: 432 RSMADLGTHPRLAAMMLAARTAEEAALAADLAALLEERDPLRPRAAGRGGPPPIPPADIT 491 Query: 443 LEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIAR 502 L G + A +Q + + R+ ++ A LLA F DRIA Sbjct: 492 LRLDLIAGEDNNPQADRGALARIRQAAARFRTRMGLKARHPAVGDAAALLAAGFPDRIAL 551 Query: 503 RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQR 562 RG G Y++ANG A L +D L++H+ L L +A A I +A +D + L Sbjct: 552 CRGDMGSYRMANGSNARLRRDDGLAKHKLLAVAGLHLRTA---AEIRMAAPLDSNALPPA 608 Query: 563 CPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLS 622 + ++ D G + A RR +IG L ++ + K ++ +L ++ + Sbjct: 609 LLERTREQVETTLDPVSGNIMARRRTRIGCLVLRDRT-EKVKPEDAGPLLLAQAKEAPET 667 Query: 623 VLNWTAEAEQLRLRLLCAAKWLP----EYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 LNW+ +QL+ R+ A E +WP +L ++ WL P++ G S+ L Sbjct: 668 TLNWSDAVKQLQARVELACTLPGGTGMEEEWPDFSSTALAGCMDEWLTPYVEGCTSITAL 727 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 + LDI LR L + LD ELP P G + Y + P + R Q +G A Sbjct: 728 RELDILNLLRTYLGYARTSWLDKELPTSLPFPGGV-AEVDYTQP-VPVASARAQAFYGTA 785 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN 798 P +A GRVPL L LLSPA RP IT DL+ FW+G + +++++M+GRYPKH WP++PA Sbjct: 786 ETPKLAGGRVPLRLALLSPAGRPQAITADLAGFWQGGWADMRRDMRGRYPKHEWPENPAL 845 Query: 799 TAPTRRTKKY 808 R K+ Sbjct: 846 APARPRAKRN 855 >UniRef50_C0WHI1 ATP-dependent helicase n=4 Tax=Corynebacterium RepID=C0WHI1_9CORY Length = 756 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 259/807 (32%), Positives = 406/807 (50%), Gaps = 60/807 (7%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LPVA E + +L V++ AP G GK+T +P L H GK+I+ PRR+A Sbjct: 9 AGLPVA----ETIDSLPHTGNVVIQAPPGTGKTTLVPPALANHSAGRGKVIVTAPRRVAV 64 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R AQRL+ L D VG+ +R ++ G + +E VT GVL R + +DPEL GV V Sbjct: 65 RAAAQRLSTLSGTP--DKVGFAIRGESRAG--SEVEFVTPGVLLRRLLKDPELEGVAAVA 120 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER L DL L + L++ + LR+D +++ MSAT+D R Q++ APV +E ++ Sbjct: 121 IDEVHERQLDTDLVLGMCLELTE-LREDFRVIAMSATVDAQRFSQLMG-APVHTTEAVTY 178 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVL 241 P++ +Y P P + A+ ++ S L+F+PGV E+ V E+L Sbjct: 179 PLDIQYAPQPGRAAGSREFYGSIAKQAARQHESTLVFVPGVREVNLVCEELRGHN----- 233 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 + PL+G + +Q A+ Q ++V+AT+IAE+SLT+ G+R+VVD RV R D + Sbjct: 234 VFPLHGKQTTAEQDAALYTDEQ---RIVVATSIAESSLTVPGVRVVVDAGLARVPRRDAQ 290 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 G++ L+T S++S QRAGRAGR PG + +++ + + + PEIL +DL+ Sbjct: 291 RGMSGLVTVSTSRSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHTTPEILSADLTQAA 350 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLA 421 + L WG + L AA+ L+ +GA Q++A L DPR Sbjct: 351 LFLDCWGAGPDFPLLDPPP--AQALAAARATLERIGAT---------QELALLPTDPRQG 399 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 A L+ + A IAA+ + P + +PA Q + ++RL+ Sbjct: 400 AALIR----HGSQAAPTIAALADAPTNTTD-------LTRRPAPQ----KEIRRLSRLVE 444 Query: 482 EADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGS 541 + + ++A A+ +++A+R G+D Y LA+G A L N L+ WL + + Sbjct: 445 DLGPADPGEVVATAYPEQVAKRVGED--YLLASGTRARLLDNSGLAGSPWLAIAEVTLSN 502 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA 601 A + I A ++ + + ++ G ++ + G + + P+ Sbjct: 503 AG-NPIIRTAARIEESAAL----DAIGVTEETRAFLRGGRVRGVKVRAAGAIVLSETPV- 556 Query: 602 KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAAL 661 K + D QA+ GIR++GL + ++ +A+ L+ RL + WP VD A Sbjct: 557 KVTGDAAAQALAAGIREEGLGLFTFSEKAQSLKDRLRHLHAHYGD-PWPEVD----AADP 611 Query: 662 ETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHE 721 WL P + + + +D+Y AL+ LL W RLD P VP+G I + Sbjct: 612 AEWLGPELHQIAAGTPTAKIDMYPALQRLLPWPGATRLDELAPQRLPVPSGRDAKIDWSG 671 Query: 722 DNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQK 781 + P + +++QE FG A +P RV LLSPA RPL +T DL+ FW G Y V+ Sbjct: 672 ER-PVVHIKLQECFGLAESPEYCGNRV--QFHLLSPAGRPLAVTDDLASFWSGPYAGVRA 728 Query: 782 EMKGRYPKHVWPDDPANTAPTRRTKKY 808 EM+GRYPKH WP+DP N T RTK Sbjct: 729 EMRGRYPKHPWPEDPWNAIATARTKNR 755 >UniRef50_A6DMD8 ATP-dependent helicase HrpB n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMD8_9BACT Length = 805 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 241/816 (29%), Positives = 397/816 (48%), Gaps = 58/816 (7%) Query: 23 VLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGY 82 +LLSAPTG+GKST +P LL + GKII+L+PRR AA+ +A A L +EK GD +GY Sbjct: 1 MLLSAPTGSGKSTCVPGILLDSGKMPGKIIVLQPRRAAAKFLAHHTARLRSEKLGDEIGY 60 Query: 83 RMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDV 142 +R + VG +T++ +T+G+ + ++ +P+L+G+ V+ DEFHER Q DLA A+ + Sbjct: 61 NIRHDSKVGAHTQIIFMTDGLFLQQLKNNPQLNGIAAVLFDEFHERRWQMDLAFAMCQKI 120 Query: 143 QQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAV 202 Q +D L L++MSATLD D+LQ+ L P++ ++ R FPV+ YL ++ + A Sbjct: 121 Q-SRQDKLHLMLMSATLDVDKLQKKL-NCPLITTDVRHFPVDINYLIPDRQKKIWEVAAK 178 Query: 203 ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAP 262 + ++ Q GSLL+F+PG EI + +L + + L+G L+ +Q + I Sbjct: 179 SAKNLIAQTDGSLLIFMPGKYEITKTVNELKKVLK--TPIFALHGQLNPQEQDRIIENT- 235 Query: 263 QGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAG 322 G +K++++TNIAETSLTI I V+D R + +DP+ + L T+ VSQ+S QR+G Sbjct: 236 -GQQKIIVSTNIAETSLTIPNITAVIDSGLVRQSAYDPQRQINTLYTKSVSQSSAEQRSG 294 Query: 323 RAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPP 382 RAGR G L L +K + R EPEIL+ D S LL++ L G +D + + +D P Sbjct: 295 RAGRTSAGRCLRLWSKSEQSRKPEHFEPEILRCDPSELLLQCLAQGFNDLSDLELIDAPD 354 Query: 383 VVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAA 441 ++ A LL LG R LS G + + PRLAA+L D+ A AA Sbjct: 355 --DIEQAWGLLSNLGFTNAHRGLSTAGVHASKMPCSPRLAALLYYGTQADQMDKACTYAA 412 Query: 442 ILEEPPRMGN------------------------SDLGVAFSRNQPAWQQRSQQLLKRLN 477 ++ E P + N ++L + + A Q+ + L N Sbjct: 413 LISEAPIILNRNKKKLLDLIPGKHVDFSSDLDLMAELLYSAKSLKFAPQECDKYGLNANN 472 Query: 478 VRG------------------GEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGA 518 R + + L AF D +A+RR + LAN Sbjct: 473 CRSVDLARMQFLRLCEKLPRLNDFNDMHPHCCLLRAFPDHLAKRRDTSSLQVTLANKQKG 532 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLA--LLVDIDELVQRCPQLVQQSDTVEWD 576 +D + + + ++A + ++S A+ L+ + + L P +Q + + WD Sbjct: 533 EIDRLSSQKKADLILATSIADIASSLGAKTKLSQLTSISPELLDHTFPGELQSQERMVWD 592 Query: 577 DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLR 636 + +++ ++ L ++ + + + Q + I D + + W + E R Sbjct: 593 PSSKSVRQAKQHAFRSLIIEEKISICEANAQTEQVLAEKIIDGTIKLNKWNEKVELWITR 652 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 + A+ P+ D D+ L E + +G+ ++ +D L+ LL W Q Sbjct: 653 VRKCAELYPDKDLITYSDQDL----EIVYMEMCSGITKASEVRDMDCLVYLKNLLSWDEQ 708 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 +D P +P G ++ I Y +Q++F P I R+PL E+L+ Sbjct: 709 CFIDEATPESIQLPEGKKLRIIYESGKEIYARAFIQQLFDLKETPLIGPARIPLTFEILA 768 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 P RP+Q+T++L +FW G Y E++ + RY KH W Sbjct: 769 PNHRPIQVTKNLENFWSGLYPEIKPALSRRYHKHKW 804 >UniRef50_D2B686 ATP-dependent helicase HrpB n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B686_STRRD Length = 880 Score = 654 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 324/898 (36%), Positives = 452/898 (50%), Gaps = 115/898 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL--LAHPGINGKIILLEPRRL 59 S LPV VLPELL ALD +L+AP G GK+T +PL L L ++I+ EPRR+ Sbjct: 6 SGLPVRHVLPELLAALDERGVAVLTAPPGTGKTTLVPLALAGLLDGSAPKRVIVAEPRRM 65 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A R A+R+A LL + G VG+ +R + GP T +EVVT GVL + +QRD EL GV Sbjct: 66 AVRAAARRMAWLLESEVGAEVGFTVRGERRAGPETVVEVVTTGVLLQRLQRDAELDGVDA 125 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----------- 168 V+LDE HER L AD ALA LLDV+ LR DL+L+ SAT D ++L Sbjct: 126 VLLDECHERHLDADTALAFLLDVRATLRPDLRLIATSATADAAPWARLLGSGAAGDHPAT 185 Query: 169 ----PEAPVVISEGRSFPVERRYLPL------PAHQRFDDAV----AVATAEMLRQESGS 214 P+AP+V + G PV + P P R D A A L + G Sbjct: 186 AVPLPDAPIVHASGAMHPVTPVWAPPARPVTPPRGLRVDPAFLSHVADVVRRALGEHGGD 245 Query: 215 LLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNI 274 +L FLPGVGEI RV L V + ++G Q + +P R+VVLAT++ Sbjct: 246 VLCFLPGVGEIGRVAAMLHG-----VDVLQVHGQAPARVQDAVL--SPGENRRVVLATSV 298 Query: 275 AETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLH 334 AE+SLT+ G+R+VVD R R D GL L T R S+AS QRAGRAGR PG+ Sbjct: 299 AESSLTVPGVRIVVDSGLAREPRTDHARGLGSLTTVRASKASAVQRAGRAGREAPGVVYR 358 Query: 335 LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQ 394 ++ + +R ++PEI +DL+G ++ WG ++ LD PP + AA+R L Sbjct: 359 CWSQAEHDRLPEHAQPEIALADLTGFALQAACWGDPAATGLALLDPPPPAAMDAARRTLH 418 Query: 395 MLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP-PRMGNSD 453 LGAL+ R++A+G++MA G PRLA L+ D AA++ A+L E PR D Sbjct: 419 DLGALD-GRVTARGRRMAGAGVHPRLARALI-----DVGPRAAEVVALLSEQLPRDAGDD 472 Query: 454 LGVAFSRNQP---AWQQRSQQLLKRLN--------------------------------- 477 L + + + R ++ +RL Sbjct: 473 LVAVWRSARRGDDGFSARWRRETRRLAQAVPREGRTPPPAGQDGRPRPAPAPAGQGGRPR 532 Query: 478 ---VRGGEADSSLIAPLLAG-------------------AFADRIARRRGQDGRYQLANG 515 GG S+ ++P AG A+ +R+ARRRG G Y +A+G Sbjct: 533 PAPAPGGRDGSAGVSPPPAGRDRGPEPGDDAVAGLVVALAYPERVARRRG--GSYLMASG 590 Query: 516 MGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEW 575 A L L+ EWL + + + S AR+ A+++D + L + V W Sbjct: 591 TAAELPQGSRLASAEWLAVAVADRPAGSASARVRQAVVIDEEIARLAAAPLYGSGEEVVW 650 Query: 576 D----DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 + +G + A R ++G + + L + A+L G+R +GL+VL WT EA Sbjct: 651 RVPPGERRGDVSARRVERLGAIELSSARLRDAD---VRPAVLEGLRTEGLAVLRWTPEAV 707 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 LR RL + L + WPA DD++L+ A + WL P ++ V L+ LD+ AL L+ Sbjct: 708 ALRERLAFCHRALGD-PWPATDDDALIGAADLWLEPELSRVRRRSDLERLDVTSALHRLV 766 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 W RL P VP+GSRI I Y D P LA ++QE+FG P +A VPLV Sbjct: 767 PWS--ARLADTAPERIEVPSGSRIRIDYSGDQ-PVLAAKLQELFGWDEAPRVAG--VPLV 821 Query: 752 LELLSPAQRPLQITRDLSDFWKG-AYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 + LLSPA RP +T DL+ FW+G YR V+ E++GRYPKH WP+DP + TRRT Sbjct: 822 IHLLSPAGRPAAVTADLASFWRGEGYRSVRAELRGRYPKHPWPEDPLSAVATRRTNPR 879 >UniRef50_Q11S69 ATP-dependent helicase n=2 Tax=Sphingobacteriales RepID=Q11S69_CYTH3 Length = 718 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 264/719 (36%), Positives = 404/719 (56%), Gaps = 28/719 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLA 60 ++LPV ++P+++ +++ AP GAGKST LPL L + GK II+LEPRRLA Sbjct: 8 TTLPVQEIVPQVINHFQDNTTLIVKAPPGAGKSTLLPLTFLNESWLEGKKIIVLEPRRLA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A+ +A R+++LL E+ G+TVGYR+R + + TR+EVVTEG+LTRM+Q D L V LV Sbjct: 68 AKTIATRMSQLLGEQAGETVGYRIRFETKISDKTRIEVVTEGILTRMLQTDNTLKDVALV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ AD+ALAL + Q R+DL+LLIMSAT+D L L +A ++ SEGR Sbjct: 128 IFDEFHERSIHADVALALCREAQLTKRNDLRLLIMSATMDLPELSAKL-KAKIIESEGRQ 186 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE Y + + A ++ + G +L+FLPG EI ++ L +++ S+ Sbjct: 187 YPVEIHYTGVTDMHLLPELTARVVSKASKDNKGDILVFLPGQAEINACRDLLDNKL-SNT 245 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 ++ LYG L Q+ A+LP G RKVVLAT+IAETSLTIEG+ VVD + ++FDP Sbjct: 246 VVHTLYGQLPFAQQQAALLPDQTGKRKVVLATSIAETSLTIEGVTTVVDSGFGKRSKFDP 305 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 ++GL+RL T +S + QRAGRAGRL G + +K Q E +PEI +DLS L Sbjct: 306 QSGLSRLETVNISVDAADQRAGRAGRLSAGTCYRMWSKAQHETLQKHHQPEIEITDLSSL 365 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 ++E+ WG S+ M WL PP ++ AK L + AL+ +++A G+K+ L +PR+ Sbjct: 366 VLEMAVWGISNIYNMVWLTPPPQSHVKQAKETLHYIDALDRNKVTAHGKKIHQLPCNPRI 425 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ------------- 467 A ML+ A+ ++ A A IAAI+EE + + GV + A ++ Sbjct: 426 AHMLLMAEKLEQEALATDIAAIIEEKDPLTIKEAGVDINERIKALRRFRRNDGKGRAFGL 485 Query: 468 -----RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIA-RRRGQDGRYQLANGMGAMLD 521 RS + L + V DS + LLA A+ +R+A R G ++QLANG A Sbjct: 486 IERVARSYRDLMEIEVENEGFDSFMTGLLLAHAYPERVAFARPGNQSQFQLANGTYAQFS 545 Query: 522 ANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 D+LSR W+ + + +I +A ++ +L +V+ + +V WD Sbjct: 546 HKDSLSRESWVSVSHIDAREGT--GKIFMASPLNPKDLK----GMVKTAVSVHWDLISND 599 Query: 582 LKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAA 641 L L+IG++ +K P+ P+++E +A+ + ++ G +L++T E EQ + + A Sbjct: 600 LIVHTELRIGKIVLKSFPMDDPTDEERSRALCDVVKKDGRELLHFTPEFEQWQAAMFRAQ 659 Query: 642 KWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLD 700 + P +P VD ESLL + WL P + LK LD+ Q + + + + +D Sbjct: 660 QQHPLAQFPDVDTESLLLTCDDWLTPFADEIEEKDDLKKLDLLQIISARIPKELLKLVD 718 >UniRef50_A6W340 ATP-dependent helicase HrpB n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W340_MARMS Length = 707 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 272/706 (38%), Positives = 385/706 (54%), Gaps = 36/706 (5%) Query: 134 LALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLP 191 +A AL L ++ RD+ LKLL+MSATLD + L+ L + S+GRSFP+ Y Sbjct: 1 MAFALCLQARELYRDEDPLKLLVMSATLDTETLEARLG-CSTLTSQGRSFPITTHYSNKA 59 Query: 192 AHQ-RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--SDVLLCPLYGA 248 + D V T + +ESGSLL+FLPG EI++ QL R+G + + PLYG Sbjct: 60 LKSFQVTDEVVRITCQAFNEESGSLLVFLPGQKEIRQAATQLQQRLGHEEHLSILPLYGE 119 Query: 249 LSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLI 308 LSL +Q I P RK+VLAT+IA+TSLTIEGIR+V+D R ARFD T TRL Sbjct: 120 LSLKEQETVIEPVIAPARKIVLATSIAQTSLTIEGIRVVIDSGLSREARFDASTATTRLH 179 Query: 309 TQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWG 368 T+R +QA QR GRAGR E G+ ++EQ + A Q++P+I SDLS L+M+L +WG Sbjct: 180 TRRATQAETIQRMGRAGRTEAGVCYRWWSEEQQHQLAPQAQPQIEISDLSSLVMDLAKWG 239 Query: 369 CSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-------RLSAQGQKMAALGNDPRLA 421 + ++ W+ PP + A LL L ALE LS G++M+ LG +PRLA Sbjct: 240 VQERLELDWITPPPNSHWQQAIGLLSNLQALEQSSGSSPSLTLSHLGEQMSELGIEPRLA 299 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGN--SDLGVAFSRNQPAWQQRSQQLLKRL--- 476 +L+ K + + ++ I IL E + N SDL + +Q S++ + Sbjct: 300 RLLLDGKLINNSDASSAICTILSEGDPLSNHHSDLADRLNWLTGHYQAHSKRPRQNYLKA 359 Query: 477 ------------NVRGGEADSSLIAPLLAGAFADRIARRRGQD---GRYQLANGMGAMLD 521 D + +A LL AFADRIA+R GQD RY+LANG A L Sbjct: 360 QQQWQKRSQQISIQEVSIDDKNDLAFLLIRAFADRIAQRVGQDHDKARYKLANGRLASLS 419 Query: 522 ANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + D ++ EW+IA + + RI LA ++D L+ L+ + W + Sbjct: 420 SLDPCAQSEWVIALDIGGHHGQDEDRIFLACPFELDLLLANFTDLLIIKLHLAWSKKEAR 479 Query: 582 LKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAA 641 L + + I +L + Q L PSE+++ QA+ IR +GLSVL W A+QL+ R+ A Sbjct: 480 LLSESQRWISKLCIDKQKLTTPSEEDISQAVCQYIRQEGLSVLPWNESAKQLKARMQFAF 539 Query: 642 KWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDS 701 + WP D LL LETWL P++ V + + + L + L LDW QQ L Sbjct: 540 LHDQQTPWPDCSDNGLLHDLETWLGPYLGKVTNQQAINKLGLNDILLSRLDWNQQQHLHQ 599 Query: 702 ELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRP 761 +PA TVP+G+ I Y E P L V++QEMFG +PT+ + +ELLSP QRP Sbjct: 600 NVPARITVPSGASHTIDYCEQQ-PTLRVKLQEMFGYTKSPTVLNQII--RIELLSPGQRP 656 Query: 762 LQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 L +++DL+ FW+ AY EV+KEM+GRYPKH WP+DP + T +T + Sbjct: 657 LAVSQDLAFFWREAYPEVRKEMRGRYPKHPWPEDPLSALATSKTNR 702 >UniRef50_D2JWV9 Putative pre-mRNA splicing factor n=1 Tax=Filobasidiella depauperata RepID=D2JWV9_9TREE Length = 1087 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 176/602 (29%), Positives = 278/602 (46%), Gaps = 36/602 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 SLP+ + +L+ A+ +++ TG+GK+T + L + G++ +PR++AA Sbjct: 448 SLPIYKLRDQLVAAIRDNQILVVVGDTGSGKTTQMAQYLAEEGFLERGRLGCTQPRKVAA 507 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE + + G VGY +R ++ T+++ +T+G+L R + DP+ S +++ Sbjct: 508 VSVAKRVAEEVGCRLGAEVGYTIRFEDMTSLETKIKYMTDGMLLRELLVDPDCSKYSVLM 567 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL + R DLKL+ SATLD + P+ GR+F Sbjct: 568 LDEAHERTIATDVLFGLLKKACK-RRPDLKLICTSATLDAAKFATYFWGCPIFTIPGRAF 626 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P + ++ L + G +LLFL G EI E L R+ Sbjct: 627 PVETLYTKEPEPDYLEASLITILQIHLMEPPGDILLFLTGQEEIDTACEILYERVKALGP 686 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++L+ P+Y AL Q + PA G RKVV+ATNIAETS+TI+GI V+D + Sbjct: 687 QVPELLILPVYAALPSEMQSRIFEPAAPGARKVVIATNIAETSITIDGIYYVIDPGFAKQ 746 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 +DP+ G+ LI +SQA QRAGRAGR PG L + PEI + Sbjct: 747 NAYDPKLGMDSLIVTPISQAQARQRAGRAGRTGPGKCYRLYTEIAYRNEMLPNPIPEIQR 806 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 ++L+ ++ L G +D ++D PP +L A L LGAL+ E L+ G+KMA Sbjct: 807 TNLASTILTLKAMGINDLISFDFMDPPPAATMLTALEQLYALGALDDEGLLTRIGRKMAD 866 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRSQQ 471 DP L+ ML+ + + + A I A+L+ ++ D + + Q Sbjct: 867 FPLDPPLSKMLIKSVDYGCSEEALTIVAMLQAGGQVFYRPKDKQAQADAKKAKFHQAEGD 926 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ-------------------L 512 LL L V G +S P F A + QD R L Sbjct: 927 LLTLLTVYNGWKNSKFSNPWCFENFIQTRAMKTAQDVRKLALTQSSPPSVSDPSEGYKTL 986 Query: 513 ANGMGAMLDANDALSR--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 G + + AL + EW + L+ + + ++ L P + + Sbjct: 987 VEGTPVSIHPSSALFQRPPEWCVYYELVLTAKE---YMHQVTAIEPKWLSDVAPTFFRVA 1043 Query: 571 DT 572 D Sbjct: 1044 DQ 1045 >UniRef50_C0W153 ATP-dependent helicase HrpB n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W153_9ACTO Length = 824 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 261/837 (31%), Positives = 407/837 (48%), Gaps = 57/837 (6%) Query: 8 AVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLAARNVAQ 66 V L L+ + Q++L+A GAGK+T +PL LL P G+II+ +PRR+A R+ A Sbjct: 2 QVRSGLNRVLEDSNQLVLTASPGAGKTTMVPLMLLESLPAEAGRIIVAQPRRVAVRSAAS 61 Query: 67 RLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFH 126 +A LL E G+TVG+RMRA V +TR+E T G L R + DP+L GV VI+DE H Sbjct: 62 YVASLLGEPVGETVGWRMRADTRVSASTRIEFTTTGTLLRRLLADPDLVGVSAVIIDEVH 121 Query: 127 ERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERR 186 ER L ADL+LA LD LRDDL+L+ MSAT D R Q++L + P++ E +P+E + Sbjct: 122 ERHLDADLSLAFALDSA-LLRDDLRLIAMSATADAARFQKLLGDCPLISVETPPYPLETK 180 Query: 187 YLPLPA--------HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 ++P F + +A GS L F+ + R+ L R Sbjct: 181 WVPFREAGLTAGGLSAAFLEYLASVIERAFN-AHGSALAFVDSIANTTRLVTMLTER--- 236 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 V PL+G LS +Q A+ G +V++AT IAETSLT+ G+ VVD RV RF Sbjct: 237 GVPAFPLHGQLSAAEQDTALSFT--GDARVIVATEIAETSLTVPGVNCVVDAGVSRVPRF 294 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 + +G T L+T SQ++M QRAGRA R PG+ ++ RA + PEIL +DL+ Sbjct: 295 EVASGTTHLVTVGASQSAMQQRAGRANRTGPGVVYRAFSESDYARALRYAVPEILAADLT 354 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL----EGERLSAQGQKMAAL 414 + W C PA + LD PV L A+ L+ +GAL + ++SA G+ ++++ Sbjct: 355 EATLLAYAWSC--PADLQLLDAFPVAALARAEATLRGIGALETAADRLQISASGRILSSI 412 Query: 415 GNDPRLAAMLVSAKNDDEAAT-AAKIAAILEEPP------------RMGNSDLGVAFSRN 461 P++A L+SA + AA++AA+L R + L F Sbjct: 413 PTVPQVAHGLLSACVWGVPSEVAARVAAVLSGSQIFPRAVSVDSAMRSADPQLVKRFKAL 472 Query: 462 QPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRG-------QDGRYQLAN 514 W Q+++ R EAD ++ A+ RI R + R+ Sbjct: 473 VTQWGSDYTQVIEAPKRRLSEAD--WPGLVVGAAYPQRICRVNPGTVVSTLKPVRFTSVG 530 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G G ++A L+ +WL A + + ++ L + + Q S +V+ Sbjct: 531 GTGFEVEAESELASAQWLAAASVQ--GVNGVVKLRLGAEISEPTALFLADAYRQVSRSVQ 588 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIR----DKGLSVLNWTAEA 630 ++ G +KA + +G L + +P++ + ++ + ++ +S+ T A Sbjct: 589 VNN--GVIKAIETVSLGALPLHQKPVSATDTE-VYDCLAEALQHCEPAGWISIFKPTKPA 645 Query: 631 EQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGL 690 QL + +P ++ + LE +L +T + R +D LR Sbjct: 646 LQLADTCNYLHSL--DDAYPQINSAWISENLEIFLGTSITELSVGRPCAEVDALTGLRLS 703 Query: 691 LDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPL 750 L W +++ +P VP+G + + D P ++V++QE FG PTI ++ Sbjct: 704 LGWETAMQIEQLVPRVVKVPSGREVPVTIDPDRGPTISVKLQECFGWRNVPTILGKQIS- 762 Query: 751 VLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 +ELLSPA RPL +T DL+ F+ Y V+ EM+GRYPKH WP+DP T +T + Sbjct: 763 -IELLSPAGRPLAVTGDLTHFFNETYVTVRAEMRGRYPKHPWPEDPWQATATVKTNR 818 >UniRef50_Q14562 ATP-dependent RNA helicase DHX8 n=78 Tax=Eukaryota RepID=DHX8_HUMAN Length = 1220 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 171/521 (32%), Positives = 265/521 (50%), Gaps = 13/521 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 SLP+ + +L+ A+ +++ TG+GK+T + Q LA G GKI +PRR+A Sbjct: 564 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQI-TQYLAEAGYTSRGKIGCTQPRRVA 622 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E G VGY +R ++C P T ++ +T+G+L R DP+L+ ++ Sbjct: 623 AMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAII 682 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL Q R D+KL++ SATLD + Q EAP+ GR+ Sbjct: 683 MLDEAHERTIHTDVLFGLLKKTVQK-RQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRT 741 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 +PVE Y P D ++ L + G +L+FL G EI E L R+ S Sbjct: 742 YPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLG 801 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 802 PDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVK 861 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEIL 353 ++ +TG+ +L+ +SQA QRAGRAGR PG L + + + PEI Sbjct: 862 QKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQ 921 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 +++L+ ++ L G +D ++D PP+ L+ A L LGAL+ E L+ G++MA Sbjct: 922 RTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMA 981 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQ 471 +P L ML+ + + + I ++L D + + + Q Sbjct: 982 EFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGD 1041 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L L V ++ P F + RR QD R Q+ Sbjct: 1042 HLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM 1082 >UniRef50_C8NRG4 ATP-dependent helicase n=10 Tax=Corynebacterium RepID=C8NRG4_COREF Length = 811 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 264/829 (31%), Positives = 420/829 (50%), Gaps = 54/829 (6%) Query: 2 SSLPVAAVLPELLTALDC-APQVLLSAPTGAGKSTWLPLQLL-----------AHPGIN- 48 + LP +L +L L A +++ +P G GK+T +P + AH G Sbjct: 14 AGLPAQTLLDDLSGTLATGATNLVIQSPPGTGKTTVVPPAVANAVRNHPDLYPAHDGRGP 73 Query: 49 GKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMI 108 G +++ PRR+A R A+RLA+L + G+ VG+ +R ++ G + ++ +T GVL R + Sbjct: 74 GPVLVTAPRRVAVRAAARRLAQLDGSRVGERVGFTVRGEHHQG--SHVQFLTPGVLMRRL 131 Query: 109 QRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML 168 DPEL+GV VI+DE HER L DL + +L ++ Q LRDD L+ MSATLD +R ++L Sbjct: 132 LADPELAGVHAVIIDEVHERQLDTDLLVGMLTELSQ-LRDDFALIAMSATLDAERFAELL 190 Query: 169 PEAPVVISEGRSFPVERRYLPLPAHQ--------RFDDAVAVATAEMLRQESGSLLLFLP 220 A V+ ++ PVE Y P A + + D +A T++ + + S L+FLP Sbjct: 191 G-AQVLSAQAPVHPVEVHYQPGTAPRLTEKGVGWEYLDHLARLTSDAVARRQESALVFLP 249 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 GV EI+RV L +D+ + PL+G L+ +Q +A+ P ++V++T +AE+SLT Sbjct: 250 GVREIERVTATLNRL--TDLEVLPLHGRLTPAEQDRAL--TPTNRPRIVVSTPVAESSLT 305 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + G+R+VVD R R D +T L+T +Q+S QRAGRAGR PG + A+E Sbjct: 306 VPGVRIVVDSGLSRSPRRDAARNMTGLVTVSCAQSSADQRAGRAGREGPGEVIRGYAQED 365 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + PEI +DL+ + L WG + + PP L AA+ LQ +GA++ Sbjct: 366 YAHFQPFTTPEIQSADLTQAALWLACWGTPRGEGLPLITAPPAPALEAAEATLQAIGAVD 425 Query: 401 GE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFS 459 G+ +++ G++++ L P L A LV+ AA + A+L + PR G+ + S Sbjct: 426 GDGAVTSLGRRLSTLPLAPHLGAALVA-----YGPQAAGVLAVLADDPR-GDVEKQARTS 479 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAM 519 R A+ R L+RL G ++ A IARR D Y LA+G A Sbjct: 480 RGNRAF-DREVARLRRLAPDTGTTRGVSAGQIIGTALPGLIARR-ETDTDYLLASGTRAT 537 Query: 520 LDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQ 579 L + LS WL + + + + +++ +T Sbjct: 538 LMDRE-LSGAPWLAIADITRSGS------RALIRAAARIEEAAALEIIGVRETTRATVTG 590 Query: 580 GTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLC 639 G ++A + G + + P + + ++ +A+ I +GL + ++ +A L RL Sbjct: 591 GKIQARQVRAAGAIELSSTP-TRATPEDAARAVTAAIEREGLGLFTFSDKAAALAHRLRF 649 Query: 640 AAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRL 699 + L E WP ++ A + WL P + + + R + +D++ AL+ LL W + Sbjct: 650 LHEHLGE-PWPDIE----AADVHLWLGPELEQIATGRPIDRIDLHPALQRLLPWPEASHM 704 Query: 700 DSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQ 759 + P H TVP+G+R I Y E P + V++QE FG T+P + +P+ LLSPA Sbjct: 705 EELAPTHLTVPSGNRHRIDYAEGR-PVVRVKLQECFGLDTSPELCG--LPVQFHLLSPAG 761 Query: 760 RPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 RPL +T DL+ FW G Y +V+ EM+GRYP+H WP+DP T R KK Sbjct: 762 RPLAVTDDLASFWSGPYAQVRAEMRGRYPRHPWPEDPWTAPATARVKKR 810 >UniRef50_C0NP73 ATP-dependent RNA helicase DHX8 n=10 Tax=Dikarya RepID=C0NP73_AJECG Length = 1266 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 173/521 (33%), Positives = 260/521 (49%), Gaps = 11/521 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 SLPV +LL A+ +++ TG+GK+T L L N G I +PRR+AA Sbjct: 601 SLPVFKFRKQLLEAVTENQLLIVVGDTGSGKTTQLTQYLAEGGFANNGIIGCTQPRRVAA 660 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + + G VGY +R ++C P T+++ +T+G+L R I DP+L +++ Sbjct: 661 VSVAKRVSEEVGCRLGAEVGYTIRFEDCTSPETKIKYMTDGILQREILLDPDLKKYSVIM 720 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL Q R DLK+++ SATLD D+ + P+ GR++ Sbjct: 721 LDEAHERTISTDVLFGLLKKTIQ-RRPDLKIIVTSATLDADKFSEYFNMCPIFSIPGRTY 779 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P D A+ L + +G +LLFL G EI E L R+ Sbjct: 780 PVEIMYSREPESDYLDAALVTVMQIHLTEPAGDILLFLTGQEEIDTACEILYERMKALGP 839 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+Y AL Q + PAP G RKVV+ATNIAETS+TI+ I VVD + Sbjct: 840 SVPELIILPVYSALPSEMQSRIFEPAPPGSRKVVIATNIAETSITIDQIYYVVDPGFVKQ 899 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 +DP+ G+ L+ +SQA QR+GRAGR PG L + + + PEI + Sbjct: 900 NAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGPGKCFRLYTEAAYQSEMLPTTIPEIQR 959 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 +LS ++ L G +D ++D PP +L A L L AL+ E L+ G+KMA Sbjct: 960 QNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLTALEELYALSALDDEGLLTRLGRKMAD 1019 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQL 472 +P LA +L+++ + I A+L + + + + Sbjct: 1020 FPMEPALAKVLIASVEMGCSDEMLSIVAMLSVHSIFYRPKEKQQQADQKKAKFHDPHGDH 1079 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 L LNV G +S +P F RR QD R QL Sbjct: 1080 LTLLNVYNGWKNSRFSSPWCFENFIQARQMRRVQDVREQLV 1120 >UniRef50_A5G2H1 ATP-dependent helicase HrpB n=2 Tax=Alphaproteobacteria RepID=A5G2H1_ACICJ Length = 809 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 324/819 (39%), Positives = 448/819 (54%), Gaps = 42/819 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LPVAA+LP+L +L + +L AP GAGK++ +P LL + G KI++LEPRRL Sbjct: 1 MDELPVAAILPDLRASLARSANAVLVAPPGAGKTSLVPQALLGADWLGGQKIVMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A+L+ E PG TVGYR R ++ +GP TR+EV+TEG+LTR + DP L G+G Sbjct: 61 AARAAAERIAQLIGEAPGGTVGYRTRLESVIGPATRIEVITEGLLTRRLLADPGLDGIGC 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE HERSL+ADLALAL LD+Q+GLR +L++L MSAT D L +L EAPV+ S GR Sbjct: 121 VIFDEIHERSLEADLALALTLDLQRGLRPELRILAMSATADIATLTTLL-EAPVIESAGR 179 Query: 180 SFPVERRY--LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 PV + L + A+A A L G +L FLPGVGEI+R E L G Sbjct: 180 VHPVTIEFAARDLADARDLPAALARAVRGALAAHRGDVLAFLPGVGEIRRAAEALE---G 236 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + PLYG L +Q + + AP R+V+LAT+IAETSLT+ G+R+VVD R Sbjct: 237 APATIMPLYGDLPPAEQARVL--APSSQRRVILATSIAETSLTVPGVRVVVDGGFRRAPE 294 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FD LTRL+T+R+S+A+ TQRAGRAGR PG+++ L + PEI ++L Sbjct: 295 FDTGRALTRLVTRRISRAASTQRAGRAGREAPGVAIRLWTEALHRGLPEFDAPEIAAAEL 354 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 SGL++ WG A P L A+ LL LGA++ R+S G++MA LG Sbjct: 355 SGLVLTCAAWGADAAALPFPEPP-PPGALAQARALLTDLGAIDATGRISQAGRRMAELGA 413 Query: 417 DPRLAAML----------------VSAKNDDEAATA--AKIAAILEEPPRMGNSDLGVAF 458 PRLAAM+ + D A A IA L+ G D GV Sbjct: 414 APRLAAMMLAADSAAEAALAADLAALLEERDPLREAGSADIALRLDAIAGRGGGDRGVIA 473 Query: 459 SRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGA 518 Q A R + L+R GG+ A L+A F DRI RRG+ G ++L+ G GA Sbjct: 474 RIRQAAGTYRGRLGLRRDTQAGGDP-----AVLIAAGFPDRIGVRRGEPGSFRLSEGGGA 528 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 LD D L+R L L +I LA + + +R + + + D Sbjct: 529 KLDPADPLARAPMLAVAAL---GGRGAPKIGLAAPISAATIEERLAARIVTTREIGLDGT 585 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 GT+ A R + G L + + + + A+ IR+K +L W+ EA QL+ R+ Sbjct: 586 GGTVMARERRRFGALVLAERSTPASPPE-IEAALREAIREK-PGLLGWSDEARQLQARVA 643 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 + PE WP + DE+L A ETWL P++ G+ L+ +LD+ LR L + Sbjct: 644 LMREIEPEG-WPDLSDEALRADFETWLFPYLAGMSRLKEAAALDLLAILRDHLGHERVRA 702 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 LD+ LPA P G+ + I Y P A R Q +G P +A G V L + LLSPA Sbjct: 703 LDAALPARIEAPGGA-VPIDYTGP-VPVAAARAQAFYGSDATPRLAGGAVRLQIALLSPA 760 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 RP+ +T DL+DFW+ + + +K+M+GRYPKH WP++P Sbjct: 761 GRPIAVTGDLADFWRRGWADARKDMRGRYPKHEWPEEPW 799 >UniRef50_Q01ZA3 ATP-dependent helicase HrpB n=2 Tax=Acidobacteria RepID=Q01ZA3_SOLUE Length = 816 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 270/805 (33%), Positives = 412/805 (51%), Gaps = 27/805 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ ++P++L L A ++L AP GAGK+T +P LL +++LEPRRLAAR Sbjct: 27 LPIDELIPDILQHLRSANTLVLEAPPGAGKTTRVPPALLELDDRE--VLVLEPRRLAARL 84 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+ +A E+ G+TVGY++R + G TRL +TEGVLTR + DP L V V+LD Sbjct: 85 AARYVAGERQERVGETVGYQVRFEEVAGARTRLRFLTEGVLTRRLLSDPALDRVACVVLD 144 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHER L+ DLALALL +Q+ R DLKL++MSATLD + L +A ++ S GR + Sbjct: 145 EFHERHLEGDLALALLRRLQRTRRPDLKLVVMSATLDTAPIAGYLDDARILRSSGRQHAL 204 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-GSDVLL 242 E Y P A + A G L+FLPG EI+R Q A+ + L Sbjct: 205 EIEYTPHSAAPLDEQVAAALERLAASGFPGHALVFLPGAFEIRRAQTACAAMARRRNWRL 264 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYG S +Q +A+ AP K++L+TN+AE+S+TI+G+ V+D RVA P + Sbjct: 265 LPLYGDQSPEEQDRAV--APSAETKIILSTNVAESSITIDGVSAVIDSGLARVASHSPWS 322 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL L R+SQAS QRAGRAGR PG ++ L + R AQ P+IL+ DL+ + Sbjct: 323 GLPTLQVARISQASANQRAGRAGRTGPGRAIRLYPLDDFARRPAQDVPQILREDLAPTAL 382 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLAA 422 L +D + WLD PP + A+ LL+MLGA ++MA PRLA Sbjct: 383 LLQAME-TDLGSLDWLDAPPAAAIEHARELLRMLGA-----SGGTAREMARYPLHPRLAR 436 Query: 423 MLVSAKNDDEAATAAKIAAILEE----PPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLN- 477 ++V A+ A IA +L P R+ + + W + +L+++LN Sbjct: 437 LIVEARRRGVPQEGAAIAGLLSAGERLPQRVPHGSRSDLLVLLESEWSPYAARLVRQLNG 496 Query: 478 --VRGGEAD---SSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWL 532 RGG + + + AF DR+ARRR Q QLA+G A L N L + + Sbjct: 497 GAARGGLRNVEREDALLISVLTAFPDRVARRR-QGSDLQLASGSSAQLAPNSTL-TADLM 554 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQ 592 +A + LA ++ + LV P +++++T+EW + ++A L Q Sbjct: 555 VAVEAEDRKDQGSPLVRLASAIEPEWLVDLFPDRLRETNTLEWQRSGERVEAVTSLLFDQ 614 Query: 593 LTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAV 652 + ++ + P + + + + GL E + R+ AA+ + Sbjct: 615 IPLETRR-TTPDPEAAGVFLAHKAVEAGLGRFADMEEIAAFQSRVNFAAQH---GAVARL 670 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTG 712 DD ++ AAL + + +A+ + ++ L+ P+ +P G Sbjct: 671 DDAAIEAALAQLAAGLKSFSELEAAAGRGGLLRAIEQAMPGPSRRLLEELAPSSIKLPRG 730 Query: 713 SRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFW 772 ++ + Y PP +A R+Q+ FG P + +G+ PLV+ LL+P QRP+Q+T DL+ FW Sbjct: 731 RQVRVHYEAGQPPWIASRLQDFFGMRETPAVGRGKSPLVIRLLAPNQRPVQMTSDLAGFW 790 Query: 773 KGAYREVQKEMKGRYPKHVWPDDPA 797 + Y +V++E+ RYPKH WP+DP Sbjct: 791 ERLYPQVRRELARRYPKHSWPEDPL 815 >UniRef50_Q09530 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 n=44 Tax=Eukaryota RepID=MOG5_CAEEL Length = 1200 Score = 637 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 181/627 (28%), Positives = 291/627 (46%), Gaps = 61/627 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQ-LLAHPGINGKIILLEPRRLAA 61 SLP+ A+ L+ A+ +++ TG+GK+T + + A G GKI +PRR+AA Sbjct: 539 SLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGKIGCTQPRRVAA 598 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE K G VGY +R ++C +T ++ +T+G+L R DP+LSG L++ Sbjct: 599 MSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDLSGYSLIM 658 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL + R +LKL+I SATLD+ + + EAP+ GR+F Sbjct: 659 LDEAHERTIHTDVLFGLLKAAARK-RPELKLIITSATLDSVKFSEYFLEAPIFTIPGRTF 717 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PVE Y P + A L + G +L+FL G EI E L R+ S Sbjct: 718 PVEILYTREPESDYLEAAHITVMQIHLTEPPGDVLVFLTGQEEIDTSCEVLYERMKSMGP 777 Query: 239 ---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+YGAL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 778 DVPELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQ 837 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 ++P++G+ L+ +SQA+ QR+GRAGR PG L + + PEI + Sbjct: 838 KIYNPKSGMDSLVVTPISQAAAKQRSGRAGRTGPGKCYRLYTERAFRDEMLPTPVPEIQR 897 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 ++L+ L++L G ++ ++D PP+ +++ A L L AL+G+ L+ G++MA Sbjct: 898 TNLASTLLQLKAMGINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMAE 957 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P L+ +L+ + + + I A+L + + + + Q Sbjct: 958 FPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQNIFYRPKEKQDHADQKKAKFHQPEGDH 1017 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN------------------ 514 L L V + P F + +R QD R QL Sbjct: 1018 LTLLAVYNSWKNHHFSQPWCFENFIQVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSR 1077 Query: 515 ---------------------------GMGAMLDANDALSRH--EWLIAPLLLQGSASPD 545 G + + A + EW++ L+ + Sbjct: 1078 VQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKE-- 1135 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDT 572 + +D LV+ P + D+ Sbjct: 1136 -YMREVTAIDPKWLVEFAPSFFKIGDS 1161 >UniRef50_Q54MH3 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=5 Tax=Eukaryota RepID=DHX16_DICDI Length = 1106 Score = 636 bits (1642), Expect = 0.0, Method: Composition-based stats. Identities = 174/522 (33%), Positives = 262/522 (50%), Gaps = 14/522 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 SLPV +L+ A+ +++ TG+GK+T +P Q L G + GKI +PRR+A Sbjct: 466 SLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIP-QYLHEAGFSKTGKIGCTQPRRVA 524 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+AE + K G+ VGY +R ++C T L+ +T+G+L R P+L+ ++ Sbjct: 525 AMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVL 584 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ LL D+ + R DLKLLI SAT+D +R AP GR Sbjct: 585 IIDEAHERTLHTDILFGLLKDITR-FRPDLKLLISSATMDAERFSDYFDGAPTFNIPGRK 643 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--- 237 + V Y P D AV + + G +L+FL G E+ + E L +R Sbjct: 644 YEVTTHYTQAPEADYLDAAVVTVLQIHITEPLGDILVFLTGQEEVDQAAEMLQTRTRGLG 703 Query: 238 ---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++ +Y L + Q K P P RKVVLATNIAETSLTI+GI V+D + Sbjct: 704 TKIKELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCK 763 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 F+PRTG+ L+ VS+AS QR GRAGR+ PG L + + PEI Sbjct: 764 QKMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTIPEIQ 823 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMA 412 +++L +++ L G +D ++D PP L+AA L LGAL + +L+ G+KMA Sbjct: 824 RTNLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLGRKMA 883 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRSQ 470 DP+L+ M+++++ + I A+L + D A + + Sbjct: 884 EFPVDPQLSKMIIASEKYKCSEEILTICAMLSVGNTIFYRPKDKAFAADAARKLFFHPQG 943 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L +NV +S F + +R QD R QL Sbjct: 944 DHLTLMNVFNQWRESGYAVQWCFENFIQHRSMKRAQDVRDQL 985 >UniRef50_Q7PT33 AGAP007212-PA n=4 Tax=cellular organisms RepID=Q7PT33_ANOGA Length = 1288 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 169/520 (32%), Positives = 261/520 (50%), Gaps = 11/520 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 SLP+ + +L+ A+ +++ TG+GK+T + L I GKI +PRR+AA Sbjct: 631 SLPIYKLRDDLIKAVTDNQILIVIGETGSGKTTQITQYLAESGFIARGKIGCTQPRRVAA 690 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE + G VGY +R ++C T ++ +T+G+L R D +L +++ Sbjct: 691 MSVAKRVAEEYGCRLGQEVGYTIRFEDCTSQETVIKYMTDGMLLRECLVDFDLKSYSVIM 750 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL Q R +LKL++ SATLD + Q EAP+ GR+F Sbjct: 751 LDEAHERTIHTDVLFGLLKQAVQK-RPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTF 809 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PVE Y P D ++ LR+ G +LLFL G EI E L R+ S Sbjct: 810 PVEILYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTGQEEIDTACEILYERMKSLGP 869 Query: 239 ---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 870 DVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQ 929 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 ++ +TG+ L+ +SQA+ QRAGRAGR PG + L + + PEI + Sbjct: 930 KVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKAYRLYTERAYRDEMLPTPVPEIQR 989 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 ++L+ +++L G +D ++D PPV +L+ A L L AL+ E L+ G++MA Sbjct: 990 TNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHSLSALDNEGLLTRLGRRMAE 1049 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P L+ +L+ + + I ++L D + + + Q Sbjct: 1050 FPLEPNLSKLLIMSVALQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQIEGDH 1109 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L L V ++ F +R QD R QL Sbjct: 1110 LTLLAVYNSWKNNKFSNAWCYENFVQIRTLKRAQDVRKQL 1149 >UniRef50_C0SAG2 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 n=2 Tax=Eukaryota RepID=C0SAG2_PARBP Length = 1093 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 173/524 (33%), Positives = 265/524 (50%), Gaps = 14/524 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLP+ E++ A+ +++ TG+GK+T +P L G KI +PRR+A Sbjct: 444 SLPIYRFREEIIQAVADHQIIIIVGETGSGKTTQIPQYLHEAGYTKGGMKIGCTQPRRVA 503 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+AE + K G+ VGY +R ++ T L+ +T+G+L R + +P+L ++ Sbjct: 504 AMSVAARVAEEMGVKVGNEVGYAIRFEDATSDKTVLKYMTDGMLLRELLTEPDLGAYSVL 563 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER++ D+A LL D+ + R DLKLLI SAT+D + Q+ +AP+ GR Sbjct: 564 MIDEAHERTVSTDIACGLLKDIAKA-RPDLKLLISSATIDAQKFQKYFDDAPIFNIPGRR 622 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS---RIG 237 +PV+ Y P A+ + Q G +L+FL G EI+ ++ + ++G Sbjct: 623 YPVDIHYTLQPEANYLAAAITTVFHIHISQGKGDILVFLTGQEEIEAAEQSIQETARKLG 682 Query: 238 S---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 S ++++CP+Y L Q K P P G RKVVLATNIAETSLTI+GI V+D + Sbjct: 683 SKIPELIICPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIVYVIDPGFVK 742 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 F+PRTG+ L+ S+AS QRAGRAGR+ PG L K + PEI Sbjct: 743 ENVFNPRTGMESLVVTPCSRASAGQRAGRAGRVGPGKCFRLYTKWAYYNELEENTTPEIQ 802 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMA 412 +++L+G+++ L G ++D PP L+ A L LGAL + L+ G++MA Sbjct: 803 RTNLNGVVLMLKSLGIDQLLDFDFMDPPPAETLIRALEQLYALGALNDHGDLTKVGRQMA 862 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRS- 469 DP LA +++A I A+L E + D + + + + Sbjct: 863 EFPTDPMLAKAILAADKYGCVEEVLSIIAMLGEASSLFFRPKDKKIHADSARARFTIKDG 922 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 LNV DS F + + R +D R QLA Sbjct: 923 GDHFSLLNVWNQWVDSDFSYVWARENFLQQRSLTRARDVRDQLA 966 >UniRef50_UPI000050FB42 ATP-dependent helicase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FB42 Length = 902 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 271/892 (30%), Positives = 406/892 (45%), Gaps = 97/892 (10%) Query: 3 SLPVAAVLPELLTA-LDCAPQVLLSAPTGAGKSTWLPLQLLAH----PGINGKIILLEPR 57 LP AA++ +L +A + P++++ AP G GK+T +P + H + G+II+ +PR Sbjct: 15 GLPAAALIDQLASAAVGRFPRLVVEAPPGTGKTTLVPPLIAEHLHDPGDMPGRIIVTQPR 74 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AAR A+RLA L + G+ +G+ +R ++ TR+E VT GVL + RDPEL+GV Sbjct: 75 RMAARAGARRLATLTGTRLGEDIGFTVRGESRTSARTRIEFVTTGVLLARLLRDPELAGV 134 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP-------- 169 VILDE HER L DL AL ++ LR+DL L++MSATLD + L Sbjct: 135 SAVILDEVHERHLDTDLTFALCRELVD-LREDLGLIVMSATLDATLWARRLGAGDNAGGA 193 Query: 170 --EAPVVISEGRSFPVERRYLPLPAH---------QRFDDAVAVATAEMLRQESGSLLLF 218 A ++ + P+E R+ P D + SG +L+F Sbjct: 194 ESPATLLSVSAQVHPLEVRWAPAKQRPLDARGVTWDFLDHVARTTVDALSTHTSGDVLVF 253 Query: 219 LPGVGEIQRVQEQLASRIG--SDVLLCPLYGALSLNDQRKAILP--APQGMRKVVLATNI 274 PG E++ + ++A + + L G +Q + P A G R+V+++T++ Sbjct: 254 APGAREVEEIASRIARSLPATPATEVHTLLGRTPAKEQDAILKPQAAEVGRRRVIVSTSV 313 Query: 275 AETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLH 334 AE++LT+ G+ +VVD R R D R G++ L+T R S+AS TQRAGRA RL PG Sbjct: 314 AESALTVPGVSIVVDSGLARGPRLDTRRGMSGLVTTRESKASGTQRAGRASRLGPGTVYR 373 Query: 335 LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQ 394 +++ + EI SDL+ ++ L WG D + D P A L Sbjct: 374 CLSESDWASLPEHTPAEIATSDLTSAVLTLAVWG-GDTDLLP--DPMPEGPYRLAVDNLV 430 Query: 395 MLGALEGER-------------------------LSAQGQKMAALGNDPRLAAMLVSAKN 429 LGALE ++ G+ +A + A L Sbjct: 431 ALGALEAAEPVQGAGPDQGAGAERDAGAEEASVTVTELGRAIARIPASVWSARGLFDGAA 490 Query: 430 DDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLN------------ 477 A AA+ A++E R +DL + +R Q +KR Sbjct: 491 MLSPAAAAEAIAVIESEQRAPGADLVATLRELRRGKDRRFAQDVKRFAGLAAEFSNPQDA 550 Query: 478 ----------VRGGEADSSLIAPLLAGAFADRIAR-RRGQDGRYQLANGMGAMLDANDAL 526 R G + ++A A +I R R Y LA+G A L N +L Sbjct: 551 ADQGTADQGSARAGSLSPDDLGLVVALAHPMQIGRLRSSSASEYLLASGTAATLPRNSSL 610 Query: 527 SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWR 586 WL + A I A+++D D L+ +T + QG ++A R Sbjct: 611 QGSPWLAISDVGLSGGR--AVIRAAVVIDEDTAELAGAGLMATEETATF--EQGKVRAVR 666 Query: 587 RLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL-SVLNWTAEAEQLRLRLLCAAKWLP 645 R ++G + + P+ K S + A+ +R +G +L + E+LR RL Sbjct: 667 RTRLGGIELTATPI-KASPELARSAIAASVRQRGAREILRPSEAFEELRSRLGLLHAVYG 725 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 WP V L L W + V +D+ ALR LL W RLD +P Sbjct: 726 -TPWPDVRWSQLSQTLTQWCPAALDRVARGADPSRVDLVSALRTLLPWPQASRLDELVPV 784 Query: 706 HYTVPTGSRIAIRY----------HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755 VP+GSR+ + Y + P LAV++QE FG T P++ +GRVP+V+ LL Sbjct: 785 SVEVPSGSRVRLDYPDPDRVDSESDSEQGPVLAVKLQECFGWQTAPSVCEGRVPVVVHLL 844 Query: 756 SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 SPA+RPL +T DL+ FW AY V+ E +GRYPKH WP+DP P R TK+ Sbjct: 845 SPARRPLAVTSDLASFWANAYSHVRAENRGRYPKHAWPEDPLTAPPMRGTKR 896 >UniRef50_B0JZ95 Dhx16 protein n=5 Tax=Fungi/Metazoa group RepID=B0JZ95_XENTR Length = 1016 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 169/527 (32%), Positives = 262/527 (49%), Gaps = 13/527 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV +LL A+ +++ TG+GK+T +P L H KI +PRR+A Sbjct: 373 SLPVFPYRSDLLQAISDHQILIIEGETGSGKTTQIPQYLHEHGYTKNGLKIGCTQPRRVA 432 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V+ R+++ + K G+ VGY +R ++C T L+ +T+G+L R +P+L+ ++ Sbjct: 433 AMSVSARVSQEMGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVI 492 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ L+ D+ + R DLK+L+ SATL+ +R +APV GR Sbjct: 493 IIDEAHERTLHTDVLFGLIKDIAR-FRQDLKVLVASATLNTERFSSFFDDAPVFRIPGRR 551 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 +PV+ Y P + V + Q G +L+FL G EI+ E L R Sbjct: 552 YPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIETCCEMLQERCRRLG 611 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++L+ P+Y L + Q K P P G RKVV+ATNIAETSLTI+GI V+D + Sbjct: 612 SKIAEMLVLPIYANLPSDMQAKIFEPTPPGARKVVIATNIAETSLTIDGIIYVIDPGFCK 671 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 ++ R+G+ LI S+AS QRAGRAGR+ G L + + PEI Sbjct: 672 QKSYNARSGMESLIVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYKNEMEDTTVPEIQ 731 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 +++L +++ L G +D ++D PP L+ A L LGAL L+ G++MA Sbjct: 732 RTNLGNVVLLLKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMA 791 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRSQ 470 L DP L+ ++++++ + IAA+L + D V + + Sbjct: 792 ELPVDPMLSKIILASEQYGCSEQILTIAAMLSVNNTIFYRPKDKLVHADTARANFTVPGG 851 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG 517 + LNV +S F + RR +D R QL MG Sbjct: 852 DHMVLLNVYTQWVESGHSLQWCYENFIQARSLRRARDVREQLEGLMG 898 >UniRef50_D0LYT6 ATP-dependent helicase HrpB n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYT6_HALO1 Length = 891 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 273/875 (31%), Positives = 390/875 (44%), Gaps = 92/875 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LP+ VLP L+ AL +L AP GAGK+T +P LL +G+I +LEPRRLA Sbjct: 3 ARLPIDEVLPALIDALRERSSAVLLAPPGAGKTTRVPPALLDAGLAGDGEIAVLEPRRLA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+AE L E+ G VGY +R V TR+ VTEGVLTR + DP LSGVG V Sbjct: 63 ARMAAQRVAEELGERVGGRVGYEVRFDRAVSAETRIRFVTEGVLTRKLLGDPGLSGVGAV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DEFHER LQ DLALALL +QQ R L+L++MSATLD + L E PVV SEGR Sbjct: 123 VIDEFHERHLQGDLALALLRRLQQRDRPGLRLVVMSATLDPGPVSAFLGECPVVRSEGRQ 182 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQES--------------GSLLLFLPGVGEIQ 226 +PVE Y + VA A LR G +L+FLPG GEI+ Sbjct: 183 YPVELDYAAPGDDRPLAKRVAGAVRVALRHRPEQAPEQAQAQDPAGGDVLVFLPGAGEIR 242 Query: 227 RVQEQLASR--------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 + +G L L+G L +Q +A+ P RKV+ ATN+AE+S Sbjct: 243 AAMDACRGERGQPAGLDLGQRADLVALHGDLPAAEQDRAVR--PSARRKVIFATNVAESS 300 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 +TI+G+ V+D RVAR P +G+ L + +SQAS QRAGRAGR PG + L + Sbjct: 301 ITIDGVTTVIDSGLARVARHAPWSGIPTLRVEPISQASAAQRAGRAGRTAPGRCVRLYTR 360 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 + + A PEI ++DL+ + L W + PP L AA LL+ LGA Sbjct: 361 HEHDSRPAFDPPEIARADLAEAALWLRALDIDPLDGFGWYEAPPEAALRAADELLERLGA 420 Query: 399 LEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP----------- 447 + G RLS G+ M L PR A +L+ A+ A +AA+L E Sbjct: 421 VAGGRLSKLGRAMLRLPVHPRQARLLLEAQARGVGAEGCVLAALLGERELRLSRRSSLGG 480 Query: 448 --------RMGNSDLGVAFSRNQPAWQQ-------------------------------- 467 G SDL A ++ Sbjct: 481 RGPAPAALSSGPSDLLEDLDAFAAASERGAGGARAHGLDPGGLRAVDRVQRQLASALKRT 540 Query: 468 RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIA-RRRGQDGRYQLANGMGAMLDANDAL 526 RS++L R EA + + DR+ RRR ++ G A L + Sbjct: 541 RSRELPTAPRPRTPEAVDEALQIATLAGYPDRVGRRRRPREPEIVFVGGGSATLSPTSVV 600 Query: 527 SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWR 586 E+++A + A I A VD L+ + + + D + W+ + ++ Sbjct: 601 LGAEFVVAVDARERERGRGAVIHRASAVDPAWLLDLFLEHIDERDELLWNAERQRVERVA 660 Query: 587 RLQIGQLTVKVQPLA------KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 R+ G L + Q + + + + G+ R R+ A Sbjct: 661 RMVYGDLVIDEQRDPGGARRDPATAERAAEILAEAALQAGVERFCDRDAVAAWRCRVAFA 720 Query: 641 AKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR---GLLDWGMQQ 697 A PA+ +++ AL G L + LR Sbjct: 721 AGIAGPERIPALGEDAEREALRQ----MCRGCIGFDELAQRSLLDGLRAQLAAAAPEAPA 776 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 ++ P H + R+ + Y D PP + R+Q+ F + P++ G VPL L LL+P Sbjct: 777 LVERLAPRHVDIAGRRRVPVHYESDRPPWIESRLQDFFSMSAGPSV--GGVPLTLHLLAP 834 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 QR +Q++ DL+ FW+ Y ++K++ RYPKH W Sbjct: 835 NQRAVQVSADLAGFWERHYPALRKQLMRRYPKHAW 869 >UniRef50_C4QEZ9 ATP-dependent RNA Helicase, putative n=21 Tax=Eukaryota RepID=C4QEZ9_SCHMA Length = 1569 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 168/520 (32%), Positives = 270/520 (51%), Gaps = 11/520 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 +LP+ + EL+ A++ +++ TG+GK+T + L +N G+I +PRR+AA Sbjct: 907 ALPIFRLKDELMKAVNDNKVLIVIGETGSGKTTQITQYLAEAGYVNTGRIGCTQPRRVAA 966 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + G VGY +R ++C P T+++ +T+G+L R DP+L +++ Sbjct: 967 MSVAKRVSEEFGCRLGQEVGYTIRFEDCTAPETKIKYMTDGMLLRECLIDPDLRQYSVIM 1026 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL Q RDD+KL++ SATLD+ + Q EAP+ GR++ Sbjct: 1027 LDEAHERTIHTDVLFGLLKKAIQK-RDDMKLIVTSATLDSVKFSQYFFEAPIFTIPGRTY 1085 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P + D A+ L + G +L+FL G EI E L R+ Sbjct: 1086 PVEILYSLEPENDYLDAALNTVMQIHLTEPPGDILVFLTGQEEIDSGCELLYERMKALGS 1145 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI V+D + Sbjct: 1146 EVPELIILPVYAALPSEMQSRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFVKQ 1205 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 + ++G+ +LI +SQA QRAGRAGR PG L + + A + PEI + Sbjct: 1206 KVYSSKSGMDQLIVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLATNVPEIQR 1265 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 ++L+ +++L G +D ++D PP+ L+AA L L AL+ E L+ G++MA Sbjct: 1266 TNLASTVLQLKAMGINDLLSFDFMDPPPLQTLVAAMETLHGLSALDDEGLLTRLGRRMAE 1325 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P L+ ML+ + + + + ++L + + + + Q Sbjct: 1326 FPLEPMLSKMLIMSVHLQCSEEVLTVVSMLSVQNVFYRPKEKTELADQRKAKFHQPEGDH 1385 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L L V ++ AP F +R QD R QL Sbjct: 1386 LTLLAVYNAWKNNKFSAPWCYDNFLQARTLKRAQDVRKQL 1425 >UniRef50_O45244 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 n=4 Tax=Chromadorea RepID=DHX16_CAEEL Length = 1008 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 169/525 (32%), Positives = 257/525 (48%), Gaps = 14/525 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV A + A+ +++ TG+GK+T LP L G +I +PRR+A Sbjct: 363 SLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCTQPRRVA 422 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ + K G VGY +R ++C T L+ +T+G+L R +P+L+ ++ Sbjct: 423 AMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLKYMTDGMLLREFLNEPDLASYSVM 482 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER+L D+ L+ D+ + R DLKLLI SATLD ++ +AP+ GR Sbjct: 483 MIDEAHERTLHTDILFGLVKDIAR-FRKDLKLLISSATLDAEKFSSFFDDAPIFRIPGRR 541 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIG-- 237 FPV+ Y P D A+ L Q G +L+FL G EI+ VQE L R Sbjct: 542 FPVDIYYTQAPEADYVDAAIVTIMQIHLTQPLPGDILVFLTGQEEIETVQEALMERSKAL 601 Query: 238 ----SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 +++ P+Y L + Q K P P+ RKVVLATNIAETS+TI+GI V+D Sbjct: 602 GSKIKELIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAETSVTIDGINYVIDPGFS 661 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEI 352 + FD R+G+ L +S+A+ QRAGRAGR PG L Q PEI Sbjct: 662 KQNSFDARSGVEHLHVVTISKAAANQRAGRAGRTGPGKCFRLYTAWAYKHELEEQPIPEI 721 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 +++L +++ L G D +LD PP L+ A L LGAL L+ G++M Sbjct: 722 QRTNLGNVVLMLKSLGIHDLVHFDFLDPPPQETLVIALEQLYALGALNHRGELTKLGRRM 781 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILE--EPPRMGNSDLGVAFSRNQPAWQQRS 469 A DP ++ M+++++ + + IAA+L + + + + Sbjct: 782 AEFPCDPCMSKMIIASEKYECSEEIVTIAAMLSCNAAVFYRPKAQVIHADSARKGFWSPA 841 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 + +NV +SS + +R +D R QL Sbjct: 842 GDHITLMNVYNKWQESSFSQRWCVENYVQHRTMKRARDVRDQLVG 886 >UniRef50_Q6BRT9 DEHA2D13882p n=8 Tax=Saccharomycetales RepID=Q6BRT9_DEBHA Length = 1147 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 155/525 (29%), Positives = 251/525 (47%), Gaps = 15/525 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-----GINGKIILLEPR 57 SLP+ + +L+ A+ +++ TG+GK+T + L G I +PR Sbjct: 479 SLPIFPMRADLIKAVRENQFLVIVGETGSGKTTQIVQYLAEESLDKVEGEQKIIGCTQPR 538 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AA +VA+R+AE K G+ VGY +R ++ +TR++ +T+G+L R DP +S Sbjct: 539 RVAAVSVAKRVAEEYGCKVGEDVGYTIRFEDKTSKDTRMKYMTDGMLQREALNDPLMSRY 598 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 +++LDE HER++ D+ LL +LK++I SATLD ++ P+V Sbjct: 599 SVIMLDEAHERTIATDVLFTLLKKAV-ANNPNLKIIITSATLDANKFSNYFNSCPIVRIP 657 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 GR++PV+ Y P A+ + + G +L+FL G EI E L R+ Sbjct: 658 GRTYPVDILYTREPEMDYLSSALDSVIQIHISEPEGDILVFLTGQEEIDTSCEALYERMK 717 Query: 238 ------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 ++++ P+Y AL Q K P G RKV+LATNIAETS+TI+GI VVD Sbjct: 718 ILGDTVPELIILPVYSALPSEMQSKIFEATPPGSRKVILATNIAETSITIDGIYYVVDPG 777 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEP 350 ++ +D + G+ L +SQA QR+GRAGR PG L + + + P Sbjct: 778 FVKINAYDSKLGMDSLTISPISQAQANQRSGRAGRTGPGKCYRLYTESAFKTEMLPNTVP 837 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQ 409 EI + +LS ++ L G +D ++D PP ++ A + L L AL+ + L+ G+ Sbjct: 838 EIQRQNLSHTILMLKAMGINDLLNFEFMDPPPTNTMMNALQDLYTLSALDDDGYLTKLGR 897 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQR 468 KMA +P LA L+ + + + I A+L D + + + + Sbjct: 898 KMAEFPMEPALAKTLIISVDFGCSDEILTIVAMLSVQTVFYRPKDKQKQADQKKYRFHHQ 957 Query: 469 SQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 L LNV + + + + +R Q+ R QL Sbjct: 958 YGDHLTLLNVYRSWSLNGNNKQWCVENYIQDRSMKRAQEVRKQLV 1002 >UniRef50_A7AWE8 RNA helicase, putative n=2 Tax=Piroplasmida RepID=A7AWE8_BABBO Length = 1156 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 171/554 (30%), Positives = 270/554 (48%), Gaps = 29/554 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK------IILLEP 56 SLP+ A+ ELL A+ +++ TG+GKST +P L +G I +P Sbjct: 498 SLPIFALRDELLQAVQENDILIVVGETGSGKSTQIPQYLAESGYTSGSDGESMVIGCTQP 557 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RR+AA +VA+R++E + + G VGY +R ++C +T ++ +T+G+L R + +DP L Sbjct: 558 RRVAAMSVAKRVSEEVGCRLGQEVGYCIRFEDCTTKDTVIKFMTDGMLLREVLQDPLLEQ 617 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS 176 ++LDE HER++ D+ ALL + R++ KL++ SATL+ ++ +A + Sbjct: 618 YACIMLDEAHERTIATDVLFALLKNCCSK-RENFKLIVTSATLEAEKFSTYFNDASIFSI 676 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 GR FPVE + + ++ L + +G +LLFL G EI L R+ Sbjct: 677 PGRMFPVEILHTTDQESDYMEASLITVLNIHLNEPAGDILLFLTGQEEIDVACRTLHERM 736 Query: 237 -------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +++ P+Y AL Q P P G RK V+ATNIAE SLTI+GI V+D Sbjct: 737 KRLESMSPPPLIILPVYAALPGEMQGAIFEPTPPGCRKCVIATNIAEASLTIDGIFYVID 796 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQS 348 +V R++PRTG+ L+ +SQAS QRAGRAGR PG L ++ + Sbjct: 797 PGFAKVKRYNPRTGMESLVVVPISQASAKQRAGRAGRTGPGKCYRLYTEDAYRSEMLPTA 856 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQ 407 PEI +++L+ +++ L G +D ++D+PPV L+ A L LGAL+ E L+ Sbjct: 857 VPEIQRTNLANVVILLKAMGINDFLNFDFMDKPPVETLIDALDNLYHLGALDDEGLLTRL 916 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQ 466 G+KMA DP LA ML+++ + + + I ++L + D R + + Sbjct: 917 GRKMAEFPMDPNLAKMLLTSVDLECSDEVITIVSMLSIQNIFYRPQDKQAEADRAKSRFT 976 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL------------AN 514 Q L L V + + F A R QD R QL + Sbjct: 977 QAEGDHLTLLYVYNQWRKNKFSSVWCHENFLQSRALLRAQDVRKQLISIMDRYRFKVVSC 1036 Query: 515 GMGAMLDANDALSR 528 G A + + + Sbjct: 1037 GNNAEVISKSVCAG 1050 >UniRef50_A6GDN5 ATP-dependent helicase HrpB n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDN5_9DELT Length = 879 Score = 623 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 287/870 (32%), Positives = 422/870 (48%), Gaps = 75/870 (8%) Query: 2 SSLPVAAVLPELLTALDCAP---QVLLSAPTGAGKSTWLPLQ---LLAHPGINGKIILLE 55 S LP+ A+LP L L+ +++ AP GAGK+T +P+ L G II+L+ Sbjct: 7 SELPIEAILPALRERLESGGPRTNLVIEAPPGAGKTTRVPVAVLDCLDRAQDGGTIIVLQ 66 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRRLAAR AQR+A ++ E G+ VGYR+R V TR+ +TEGVL R ++ +PEL Sbjct: 67 PRRLAARLSAQRVASMVGEVVGERVGYRVRFDRAVSARTRVLFMTEGVLLRRLRSEPELP 126 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPV 173 GV VILDEFHER L DL LALL +Q D L +L+MSATLD + + L A Sbjct: 127 GVAAVILDEFHERHLDGDLLLALLTRLQGRCPADRRLHVLVMSATLDAEPIAAHLG-AER 185 Query: 174 VISEGRSFPVERRYLPLPAHQR-------FDDAVAVATAEMLRQES--------GSLLLF 218 + SEGRSFPVE Y A + + VA A E++ G +L+F Sbjct: 186 LRSEGRSFPVEVAYRAPKARAKSSRGELPLERQVAAAVRELVEDGRVGARSPEGGHVLVF 245 Query: 219 LPGVGEIQRVQEQLASRIGS-DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAET 277 LPG EI+ E A S + L L+G LS Q +A+ K++L+TN+AET Sbjct: 246 LPGAREIRASAEACAKLAASAGLELMTLHGQLSREAQDRAVSRGDLRRGKLILSTNVAET 305 Query: 278 SLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA 337 S+TI+G+ VVD RVA FDP TGL RL +S+AS QRAGRAGR PG+ L L + Sbjct: 306 SITIDGVVAVVDSGLARVADFDPSTGLPRLSLAPISRASAAQRAGRAGRTRPGLCLRLYS 365 Query: 338 KEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQ--MSWLDQPPVVNLLAAKRLLQM 395 + ++ A PE+ + +L+GL +EL G + + WL+ PP ++ A+ LL Sbjct: 366 RANHDQRRAHDLPELQRLELAGLCLELAAAGIREVTDASLPWLEAPPEASVAVARELLLH 425 Query: 396 LGALEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP------- 447 LGA++ L+ G+ M A PRLA +LV+ A+ AA+L E P Sbjct: 426 LGAIDDAGALTDTGRAMLAYPVHPRLARLLVAGVELGVGQAVARAAAVLSERPLRPPGSR 485 Query: 448 --RMGNSDLGVAFSRNQPAWQ-----------------QRSQQLLKRLNVRGGEADSSL- 487 R+ ++D+ A + + +R L +L RG + L Sbjct: 486 ATRIDDADVFEAMAWLGRGGRDEGRAPRSVDPGALASVRRVAAQLSKLARRGADKQPRLA 545 Query: 488 -------IAPLLAGAFADRIAR---RRGQDGRYQLANGMGAMLDANDALSRHEWLIA--P 535 + L A DR+AR R A G A L + + R +W++A Sbjct: 546 KAEIEARVREALLLAHPDRVARVDVDEHDQRRLVFAFGGSAQLAESSGV-RAQWVVALRS 604 Query: 536 LLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTV 595 + AR+ +A +D D L++ ++ + V +D + + L+ G+LT+ Sbjct: 605 EERREGLRRQARVSMASAIDPDWLLEHYADTIEDLERVAFDPKRERVFGESALRYGKLTI 664 Query: 596 KVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDE 655 + + + + A+L R G S +QLR R++ W +D E Sbjct: 665 ESSAMPRLDPERASAALLEAARQAGASAFCDAEALDQLRRRVVFV--VSQRGLWAGLDFE 722 Query: 656 SLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW--GMQQRLDSELPAHYTVPTGS 713 +L ++ L TG S L+ + + LD G + L P+H +P G Sbjct: 723 TL---VDRSLERACTGRTSFAELREAGLLTTIELELDALAGTPRSLARLAPSHVRLPGGR 779 Query: 714 RIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWK 773 R+ I Y D PP + R+Q+ FG A P I G VPLVL L +P + + +T DL+ FW+ Sbjct: 780 RLRITYETDRPPWVGSRLQDFFGMADGPRILDGAVPLVLHLRAPNKHAVAVTTDLAGFWR 839 Query: 774 GAYREVQKEMKGRYPKHVWPDDPANTAPTR 803 Y E ++ + RYP+H WP+DP P Sbjct: 840 EHYPEQRRRLSRRYPRHDWPEDPLTAKPPA 869 >UniRef50_Q10752 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 n=162 Tax=Eukaryota RepID=CDC28_SCHPO Length = 1055 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 172/525 (32%), Positives = 267/525 (50%), Gaps = 15/525 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV +LL A++ +L+ A TG+GK+T LP L G KI +PRR+A Sbjct: 417 SLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPRRVA 476 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ ++ + G VGY +R +N T ++ +T+G+L R +P+L+ ++ Sbjct: 477 AMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVI 536 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ L+ D+ + R DLK+LI SAT+D ++ EAPV GR Sbjct: 537 IIDEAHERTLHTDILFGLVKDIAR-FRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRR 595 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQ-------RVQEQLA 233 +PV+ Y P P A+ Q +G +L+FL G EI+ + L Sbjct: 596 YPVDIYYTPQPEANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRILG 655 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 RI +++LCP+Y L Q K P P G RKVVLATNIAETS+TI+G+ V+D Sbjct: 656 KRIP-EIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFV 714 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEI 352 + ++PRTG+ L++ S+AS QRAGRAGR+ PG L + + PEI Sbjct: 715 KQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPEI 774 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 +++L+ +++ L G ++ ++D PP L+ + LL LGAL L+ G++M Sbjct: 775 QRTNLTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQM 834 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRS 469 A DP L+ L+++ I ++L E + D + + + + Q Sbjct: 835 AEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPG 894 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 L L++ D+ F + R +D R QLAN Sbjct: 895 GDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLAN 939 >UniRef50_B5ZE33 ATP-dependent helicase HrpB n=4 Tax=Acetobacteraceae RepID=B5ZE33_GLUDA Length = 853 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 327/840 (38%), Positives = 460/840 (54%), Gaps = 47/840 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 + LPVAA+LP L +L P +L AP GAGK+T +PL LL P +G+I++LEPRRLA Sbjct: 18 ADLPVAAILPALRASLAEHPSAVLVAPPGAGKTTTVPLALLDAPWRGDGRIVMLEPRRLA 77 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+A LL E G VGYR R + + TR+EVVTEG++ R + DP L GV V Sbjct: 78 ARAAAQRMAALLGEDAGGLVGYRTRLDSAISERTRIEVVTEGLMVRRLLADPTLEGVACV 137 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HERSL AD ALA LDVQ+ LR DL+L+ MSAT+D L ++ EA ++ S GR Sbjct: 138 ILDEIHERSLDADAALAFCLDVQRSLRPDLRLVAMSATMDGAALSALM-EARLIESAGRM 196 Query: 181 FPVERRYLPL--PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPV + P P + +A+A A L + G +L FLPGVGEI+R Q A+ G+ Sbjct: 197 FPVAIHHAPRDIPHVRDLPEAMARAIRAALAEHEGDILAFLPGVGEIRRTQ---AALAGA 253 Query: 239 DVLLCPLYGALSLNDQRKAILPAP-----QGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + PLYG + +Q + + P P R+V+LAT+IAETSLT+ G+R+VVD Sbjct: 254 PAAILPLYGDMPPAEQDRVLRPGPSDGQKGNGRRVILATSIAETSLTVPGVRVVVDGGYR 313 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R R DP TGL+RL T R+S+A+ QRAGRAGR PG +L L ++ A PEIL Sbjct: 314 RSPRLDPGTGLSRLETVRISRAAAAQRAGRAGREGPGAALRLWSEATQRGMAPHDRPEIL 373 Query: 354 QSDLSGLLMELLQWGC---SDPAQMSWLDQPPVVNLL-AAKRLLQMLGALEGERLSAQGQ 409 ++L+GL ++ W + P ++ D PP A LL + + R++A+G+ Sbjct: 374 DAELTGLRLDTAAWQAAMGTAPDELPLPDAPPNGAFEAARALLLALGALDDDARITAEGE 433 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS----------------- 452 +MAALG PRLAAM+++A++ EAA AA IAA+LEE + Sbjct: 434 RMAALGAHPRLAAMMLAARDAGEAALAADIAALLEERDPLRPRPAGGRGAPAVPPADIAL 493 Query: 453 --------DLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR 504 D A +Q + Q +RL +R G A A LLA AF DRIA+RR Sbjct: 494 RLDLIAGGDHADADRGALARIRQAAGQYRRRLGLRAGTAGQGHAASLLAAAFPDRIAQRR 553 Query: 505 GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 G+ G ++L+ G GA L D L+ L L A I +A +D D L + Sbjct: 554 GEPGSFRLSGGGGARLGKTDRLADAGLLAVATL---HVRTAADIRMAAALDPDSLPETVR 610 Query: 565 QLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL 624 + + D G++ A RRL++G L ++ + +A D + +L + D+ + L Sbjct: 611 RRATEQVETTLDPVTGSVMARRRLRLGALVLRDRTVAAAPGD-VADLLLRQVADRLDTTL 669 Query: 625 NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIY 684 WT + Q + R+ A P + D +L A WL P +TG+ L + +LD+ Sbjct: 670 GWTPASRQFQARVALARGLPGRDALPDLSDAALAADAAEWLAPWLTGLSRLSEVAALDVL 729 Query: 685 QALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA 744 LRG LD LD LP H +P G + + Y + P + R Q +G P +A Sbjct: 730 AMLRGRLDHATLAWLDRALPTHLDLPGGR-VPVDYTQP-VPTASARAQTFYGVRETPRLA 787 Query: 745 QGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRR 804 G+V L + LLSPA RP IT DL+ FW G++ +++++M+GRYP+H WP++PA AP R Sbjct: 788 DGQVGLQVALLSPAGRPQAITADLAGFWAGSWADMRRDMRGRYPRHDWPENPATAAPPAR 847 >UniRef50_B6ADS3 DHX8/prp22-type ATP-dependent RNA helicase, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6ADS3_9CRYT Length = 1078 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 168/638 (26%), Positives = 273/638 (42%), Gaps = 63/638 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 +LP+ A+ L+ A+ +++ TG+GK+T + L + I +PRR+A Sbjct: 422 NLPIFALRESLVDAVRKNQIIVVIGETGSGKTTQITQYLYEEGFCDDGNMIGCTQPRRVA 481 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A+ + G TVG+ +R ++ TR++ +T+G+L R D LS ++ Sbjct: 482 ATSVARRVAQEVGCTIGSTVGFSIRFEDVTSSETRIKYMTDGMLLREALSDHSLSKYNVI 541 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL R +L++ SATL+ D+ + + GR+ Sbjct: 542 MLDEAHERTITTDVLFGLLKATCIE-RPSFRLIVTSATLEADKFSRYFMNCNIFAIPGRT 600 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---- 236 FPVE Y P + A+ LR+ G +L+FL G EI L R+ Sbjct: 601 FPVEILYTREPESDYVEAALLTVLQIHLREPPGDILVFLTGQEEIDNACRTLHERMQKLE 660 Query: 237 ---GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 +++ P+Y + Q P P+G RK V+ATNIAE SLTI+GI V+D Sbjct: 661 NLNPPPLIILPVYSSQPSEVQSLIFEPTPEGCRKCVIATNIAEASLTIDGIYFVIDPGFA 720 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEPEI 352 ++ F+ +TG+ L+ +SQAS QR+GRAGR PG L + + + PEI Sbjct: 721 KMMVFNSKTGMDSLVVAPISQASARQRSGRAGRTGPGKCYRLYTEIAFKTEMLPVTIPEI 780 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKM 411 +++LS ++ L G +D ++D PP LL A L L AL+ L+ G+KM Sbjct: 781 QRTNLSNTVLLLKALGINDLLNFDFMDPPPPHTLLIALETLYELDALDDNGILTRLGRKM 840 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQ 470 A L P L+ M++S+ + + I ++L D A R++ + Sbjct: 841 AELPMSPNLSKMVLSSVDLGCSDEIITITSMLSVQNVFYRPKDKQAAADRHKSKFHHSYG 900 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANG--------------- 515 L LN+ P F + ++ QD R QL + Sbjct: 901 DHLTYLNIYNSWQRQRYSVPWCYENFLQSRSLKKAQDVRKQLISIFDKYQLNIISARNDY 960 Query: 516 ------------------------------MGAMLDANDAL--SRHEWLIAPLLLQGSAS 543 L + L EWL+ L+ + Sbjct: 961 DKIRKAICAGFFSHACKKDSQEGYRSLVDNQQVYLHPSSTLFNKSPEWLLYHELVFTTKE 1020 Query: 544 PDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 I + + LV+ P L Q +D + + Sbjct: 1021 ---YIRDCCTIQPNWLVELAPNLFQFADEAKISKRKMR 1055 >UniRef50_O22899 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase n=8 Tax=Eukaryota RepID=DHX15_ARATH Length = 729 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 161/538 (29%), Positives = 263/538 (48%), Gaps = 24/538 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-------HPGINGKIILLE 55 LPV + L L+ ++L TG+GK+T +P +L G + + Sbjct: 64 DLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQ 123 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRR+AA +V++R+A+ ++ G+ VGY +R ++C T L+ +T+G+L R DP L Sbjct: 124 PRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLE 183 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVI 175 ++ILDE HER+L D+ LL +V + R DLKL++MSATL+ ++ Q+ AP++ Sbjct: 184 RYKVIILDEAHERTLATDVLFGLLKEVLRN-RPDLKLVVMSATLEAEKFQEYFSGAPLMK 242 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GR PVE Y P + A+ + + G +L+FL G EI+ ++ Sbjct: 243 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKE 302 Query: 236 IGS------DVLLCPLYGALSLNDQRKAILPAP-------QGMRKVVLATNIAETSLTIE 282 + + V + PLY L Q+K PAP RK+V++TNIAETSLTI+ Sbjct: 303 VSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTID 362 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GI V+D + ++PR + L+ +S+AS QR+GRAGR PG L ++ Sbjct: 363 GIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFN 422 Query: 343 R-AAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG 401 Q+ PEIL+S+L+ ++ L + G D ++D P L+ A +L LGAL+ Sbjct: 423 NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD 482 Query: 402 E-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFS 459 E L+ G+ M+ DP+++ ML+ + + + ++A+L P + + A Sbjct: 483 EGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAAD 542 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG 517 + + L LNV ++ F + A + + R QL M Sbjct: 543 EAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMS 600 >UniRef50_O60231 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=75 Tax=Eukaryota RepID=DHX16_HUMAN Length = 1041 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 177/524 (33%), Positives = 257/524 (49%), Gaps = 13/524 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV ELL A+ +++ TG+GK+T +P L N KI +PRR+A Sbjct: 398 SLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVA 457 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A + K G+ VGY +R ++C T L +T+G+L R +P+L+ +V Sbjct: 458 AMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVV 517 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER+L D+ L+ DV + R +LK+L+ SAT+D R +APV GR Sbjct: 518 MVDEAHERTLHTDILFGLIKDVAR-FRPELKVLVASATMDTARFSTFFDDAPVFRIPGRR 576 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--- 237 FPV+ Y P + V + Q G +L+FL G EI+ E L R Sbjct: 577 FPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLG 636 Query: 238 ---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++L+ P+Y L + Q + P P G RKVV+ATNIAETSLTIEGI V+D + Sbjct: 637 SKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCK 696 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 ++PRTG+ L S+AS QRAGRAGR+ G L + + PEI Sbjct: 697 QKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 756 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 ++ L +++ L G D +LD PP LL A L LGAL L+ G+KMA Sbjct: 757 RTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMA 816 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRSQ 470 L DP L+ M+++++ + +AA+L + D V + + Sbjct: 817 ELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGG 876 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 L LNV A+S + F + RR +D R QL Sbjct: 877 DHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEG 920 >UniRef50_B2GHK7 ATP-dependent helicase n=7 Tax=Actinomycetales RepID=B2GHK7_KOCRD Length = 924 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 242/792 (30%), Positives = 363/792 (45%), Gaps = 64/792 (8%) Query: 73 NEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQA 132 +PG VG+ +R + TR+E VT G+L R + RDPEL+G V+LDE HER +++ Sbjct: 134 GTEPGGVVGWSVRGERKTSKATRVEFVTPGILLRRLLRDPELAGAAAVVLDEVHERGVES 193 Query: 133 DLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISEGRSFPVERRYLP 189 DL + +L +++Q LR+DL L+ MSAT++ +R +L APVV P+ ++ P Sbjct: 194 DLLVGMLAELRQ-LREDLVLVAMSATVEAERFAGLLGGEAPAPVVDCPSALHPLAVQWAP 252 Query: 190 LPAHQR--------FDDAVAVATAEMLR----QESGSLLLFLPGVGEIQRVQEQLASRIG 237 P A R S L+FLPG E+ V +L R Sbjct: 253 GPQRLDERGVTPSFLSHMARTAADAHRRALAQDPSVDALVFLPGAREVSHVAAEL--RGL 310 Query: 238 SDVLLCPLYGALSLNDQRKAIL-PAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 +D + L+G L +Q +A+ P ++V+ T++AE+SLT+ G+RLVVD R Sbjct: 311 TDAEVLELHGQLPPREQDRAVAGRGPGERPRIVVTTSLAESSLTVNGVRLVVDSGLARQP 370 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R D G++ L+T S+AS QRAGRA R PG + A + PE+ +D Sbjct: 371 RRDAGRGISGLVTVSASKASAEQRAGRAARQGPGTVVRCYDDAAWGAMPAHTVPEVRTAD 430 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALG 415 L+ + L WG M+ D P A L LGA+ E R + G+ + +L Sbjct: 431 LTAACLALAVWGSPGGEGMALPDPLPPRARADADAELVRLGAVAEDGRATDLGRLLVSLP 490 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW------QQRS 469 +PR L+ + A TAA++ A + + R+ +D+ + + +R Sbjct: 491 VEPRWGRALLDGADLVGARTAAEVIASVSDGARVPAADIPALVRGLRSSRGGESTRWRRE 550 Query: 470 QQLLKRLNVRGGEADSSL----------------------IAPLLAGAFADRIARRRGQD 507 Q L+R+ + ++ A + +ARR Sbjct: 551 VQRLERMTAHPAAGGPADGSGEDTDAPPRGPEPDVPAEVREGVVVGLARPEWMARRADAH 610 Query: 508 G-RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDA----RILLALLVDIDELVQR 562 G ++ LA+G A L+A L HEWL L + + A I A +D+ Sbjct: 611 GDQWLLASGTRAGLEAGSPLRHHEWLAVAELTRAAGRAAAGTGAVIRAAAPLDLQHAQLV 670 Query: 563 CPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLS 622 L + + + G + +G + + P+ + D A+ + +GL Sbjct: 671 AGSLARTETRASF--SNGRVSTREVRAVGAIELSATPV-RADPDTAVPAIRAALAAEGLD 727 Query: 623 VLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLD 682 +L W A LR L + WPAVDD +LLA E WL P + V L+S+ Sbjct: 728 LLPWDDAARGLRA-RLALLRRHLGQPWPAVDDAALLARAEEWLGPELRDVARGGSLRSVR 786 Query: 683 IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRY-------HEDNPPALAVRMQEMF 735 + ALR LL W RLD P VP+G+ I Y PP +AV++QE F Sbjct: 787 VADALRRLLPWPDAARLDELAPRRLDVPSGNTARIAYPEVFDEDDPARPPVVAVKLQECF 846 Query: 736 GEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDD 795 G A P +A GRVP+ LLSP + L IT DL+ FW G Y +V+ EM+GRYPKH WP+D Sbjct: 847 GWAETPRVADGRVPVQFHLLSPGKATLAITEDLASFWSGPYAQVRAEMRGRYPKHPWPED 906 Query: 796 PANTAPTRRTKK 807 P N T +T + Sbjct: 907 PWNAVATAKTSR 918 >UniRef50_B2ANS3 Predicted CDS Pa_6_9920 n=3 Tax=Saccharomyceta RepID=B2ANS3_PODAN Length = 1151 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 179/556 (32%), Positives = 269/556 (48%), Gaps = 31/556 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 SLPV A +L+ A+ +++ TG+GK+T L Q LA G NG I +PRR+A Sbjct: 503 SLPVFAFREQLINAVRENQVLIVVGETGSGKTTQL-TQYLAEAGFTNNGIIGCTQPRRVA 561 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E + + G+ VGY +R ++ P T+++ +T+G+L R I DPEL ++ Sbjct: 562 AVSVAKRVSEEVGCRLGEEVGYTIRFEDVTSPATKIKYMTDGMLEREILIDPELGRYSVI 621 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ ALL + R DLK+++ SATLD D+ + P+ GR+ Sbjct: 622 MLDEAHERTIATDVLFALLKKTMKS-RKDLKVIVTSATLDADKFSEYFNACPIFTIPGRT 680 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--- 237 FPVE Y P + G +LLFL G EI E L R+ Sbjct: 681 FPVEILYSREP------------------EPMGDILLFLTGQEEIDTSCEILFERMKALG 722 Query: 238 ---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++ P+Y AL Q + PAP G RKVV+ATNIAETS+TI+ I V+D + Sbjct: 723 PSVPELIILPVYSALPSEMQSRIFDPAPPGSRKVVIATNIAETSITIDHIYYVIDPGFVK 782 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 +DP+ G+ LI +SQA QRAGRAGR PG L + + + PEI Sbjct: 783 QNAYDPKLGMDSLIVTPISQAQANQRAGRAGRTGPGKCFRLYTEAAYQSEMLPTTIPEIQ 842 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 + +LS ++ L G +D + ++D PPV +L A L LGAL+ E L+ G+KMA Sbjct: 843 RQNLSNTILMLKAMGINDLIRFDFMDPPPVNTMLTALEELYALGALDDEGLLTRLGRKMA 902 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQ 471 +P L+ +L+S+ + + I A+L D + + + Sbjct: 903 DFPMEPSLSKVLISSVDKGCSDEVVSIVAMLNLSTIFYRPKDKQNQADQKKAKFHDPHGD 962 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEW 531 L LNV + F + RR +D R Q+ M + R Sbjct: 963 HLTLLNVYNSWKNHGFSPTWCHENFIQARSMRRAKDVRDQIVKIMNRHRHPIVSCGRETD 1022 Query: 532 LIAPLLLQGSASPDAR 547 + L G AR Sbjct: 1023 RVRQALCSGFFRNTAR 1038 >UniRef50_C4JEY7 ATP-dependent RNA helicase DHX8 n=25 Tax=cellular organisms RepID=C4JEY7_UNCRE Length = 1446 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 194/666 (29%), Positives = 299/666 (44%), Gaps = 70/666 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLP+ ELL A+ +++ TG+GK+T +P L G KI +PRR+A Sbjct: 453 SLPIYQFREELLQAIADHQIIIIVGETGSGKTTQIPQYLHEAGYTKGGMKIGCTQPRRVA 512 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+AE + K G+ VGY +R ++ T L+ +T+G+L + + +P+LS + Sbjct: 513 AMSVAARVAEEMGVKVGNEVGYAIRFEDATSDKTILKYMTDGLLLKELLTEPDLSQYAAL 572 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER++ D+A LL D+ + R DLKLLI SAT+D + Q+ +AP+ GR Sbjct: 573 MIDEAHERTVPTDIACGLLKDIAKA-RPDLKLLISSATIDAQKFQKYFDDAPIFNIPGRR 631 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--- 237 +PV+ Y P A+ + Q G +L+FL G EI+ ++ L Sbjct: 632 YPVDIHYTSQPEANYLAAAITTVFQIHITQGRGDILVFLTGQEEIEAAEQNLQETARKLG 691 Query: 238 ---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++CP+Y L Q K P P G RKVVLATNIAETSLTI+GI V+D + Sbjct: 692 GKVPEMIICPIYANLPSELQTKIFEPTPPGARKVVLATNIAETSLTIDGIVYVIDPGFVK 751 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 F+PRTG+ L+ S+AS QRAGRAGR+ PG L K A + PEI Sbjct: 752 ENVFNPRTGMESLVVTPCSRASAGQRAGRAGRVGPGKCFRLYTKWAYHNELEANTTPEIQ 811 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMA 412 +++LS +++ L G D ++D PP L+ A L LGAL + L+ G++MA Sbjct: 812 RTNLSSVVLMLKSLGIDDLLDFDFMDPPPAETLIRALEQLYALGALNDHGELTKIGRQMA 871 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRS- 469 DP LA +++A I A+L E + D + + + + Sbjct: 872 EFPTDPMLAKAILAAGKYGCVEEILSIIAMLGEASALFYRPKDKKIHADSARARFTVKDG 931 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA---------------- 513 L LN+ DS F + + R +D R QLA Sbjct: 932 GDHLSLLNIWNQWVDSDFSYVWARENFLQQRSLTRARDVRDQLAKLCDRVEVAVSTAGAN 991 Query: 514 -------------------------------NGMGAMLDANDAL--SRHEWLIAPLLLQG 540 NG L + L +W+I L+ Sbjct: 992 NLVPIQKAITAGFFPNAARLQRGGDSYWTVKNGQTVYLHPSSTLFEVNPKWVIYHELVLT 1051 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 S + + + + LV+ P +Q D + + + A IG L++ L Sbjct: 1052 SKE---YMRSNMPLQPEWLVEVAPHYHKQKDLETLANRKLEVCA----AIGALSLDKNCL 1104 Query: 601 AKPSED 606 +++ Sbjct: 1105 GSANKE 1110 >UniRef50_A7ASE9 RNA helicase, putative n=1 Tax=Babesia bovis RepID=A7ASE9_BABBO Length = 931 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 167/521 (32%), Positives = 268/521 (51%), Gaps = 12/521 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP+ ELL A+ P +++ TG+GK+T +P L G GKI +PRR+AA Sbjct: 293 LPIYGYRHELLAAVRNHPILVVVGETGSGKTTQIPQYLYEVGYGKAGKIGCTQPRRVAAM 352 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+A+ + K G VGY +R ++C T ++ +T+G+L R + +P+LS ++++ Sbjct: 353 SVATRVAQEVGTKLGQEVGYSIRFEDCTSNQTVVKYMTDGMLLREMMTEPDLSSYSVMMI 412 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER++ D+ L+ D+ + RDD +L++ SATL+ ++ AP+ GR FP Sbjct: 413 DEAHERTVHTDIIFGLVKDLCR-YRDDFRLIVASATLEAEKFALYFDHAPIFRIPGRRFP 471 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG----- 237 V+ Y P D +V + Q G +L+FLPG EI+ VQE+L +R+ Sbjct: 472 VQIYYTKAPEANFLDASVITVLQIHITQPLGDILVFLPGQQEIEEVQEELQNRLRNRGKD 531 Query: 238 -SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 ++++ P+Y L + Q K P P RK +LATNIAETS+T+ I V+DC ++ Sbjct: 532 MRELIVLPVYATLPSDMQAKIFEPTPPNARKAILATNIAETSITLNEIVYVIDCGFCKMN 591 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQS 355 + P+TG+ L+T S+AS QR GRAGR+ PG L K E+ ++PEI +S Sbjct: 592 SYSPKTGMESLVTVPCSKASANQRTGRAGRVRPGHCFRLYTKFSYEKEMDDVNDPEIQRS 651 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAAL 414 +L+ +++ L G D ++D P L+ A L+ LGAL + L+ G++MA L Sbjct: 652 NLAHVVLSLKALGIDDLINFDFMDPPAPETLIKALELIYALGALNDKGELTRTGRRMAEL 711 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRSQQL 472 DP + ML++++ + I A+L + D + + + Sbjct: 712 PMDPTYSKMLLASEKYKCSNEIITICAMLGVGNNIFYRPKDKQLHADNAHKNFFRVGGDH 771 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 L +NV D+ F + RR +D R QL Sbjct: 772 LVLMNVYNQWEDTDFSVAWCYENFVQHKSLRRARDIREQLV 812 >UniRef50_C4Y9K0 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y9K0_CLAL4 Length = 1131 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 174/521 (33%), Positives = 262/521 (50%), Gaps = 12/521 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLAA 61 LPV A+ +LL+A+ V++ TG+GK+T + L G I +PRR+AA Sbjct: 466 LPVYAMREQLLSAVRDNQFVIVVGETGSGKTTQIVQYLYEENFHRGDKIIACTQPRRVAA 525 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+A+ + G VGY +R + P TR++ +T+G+L R DP++S +V+ Sbjct: 526 ESVAKRVAQEVGCPLGQEVGYTIRFDDRTSPATRIKYMTDGMLQREALLDPQMSKYAVVM 585 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ ALL + DL++L SATLD D+ + PV+ GR+F Sbjct: 586 LDEAHERTVATDVLFALLKKAARA-NPDLRVLATSATLDADKFSRYFGGCPVLHVPGRTF 644 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P A+ + ++SG +L+FL G EI E L +RI Sbjct: 645 PVEIMYSREPEPDYVAAALDCVMQIHVAEDSGDILVFLTGQDEIDTCCEALEARIKTLGR 704 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++L+ P Y AL + Q + PAP G RKVVLATNIAETS+TI+GIR VVD ++ Sbjct: 705 AVPELLVLPAYSALPPDQQARIFEPAPPGARKVVLATNIAETSITIDGIRYVVDPGFVKL 764 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEPEILQ 354 +DPR G+ L+ +SQA QR+GRAGR PG L +E + PEI + Sbjct: 765 NAYDPRLGMDSLVVSPISQAQANQRSGRAGRTAPGKCFRLYTEEAFRTEMRPNTVPEIQR 824 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 +L ++ L G D + ++D PP + A + L +L AL+ L++ G++MA Sbjct: 825 QNLEHTILMLKAMGIDDVLRFEFMDPPPAPTTVQALKELYVLDALDENGHLTSMGRRMAD 884 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P LA ++++ + A+ + A+L D A + + + Sbjct: 885 FPMEPALAKTVLASVDLSCASDVLSVVAMLSVQNVFYRPKDKQAAADQRKQRFHSVHGDH 944 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 L LNV G S A F A R + R QLA Sbjct: 945 LTLLNVFRGWEQSGRSRSWCAENFVQERAMWRAFEVRKQLA 985 >UniRef50_Q6P404 DEAH (Asp-Glu-Ala-His) box polypeptide 38 n=9 Tax=Eukaryota RepID=Q6P404_DANRE Length = 1258 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 163/518 (31%), Positives = 261/518 (50%), Gaps = 10/518 (1%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAAR 62 LP+ AV +LL + V++ TG+GK+T L L + G + +PRR+AA Sbjct: 563 LPIFAVRQQLLNIIRDNNIVIVVGETGSGKTTQLTQYLHEDGYTSYGMVGCTQPRRVAAM 622 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E +N G+ VGY +R ++C T ++ +T+G+L R R+ +L VI+ Sbjct: 623 SVAKRVSEEMNSNLGEEVGYAIRFEDCTSEKTMIKYMTDGILLRESLRESDLDHYSAVIM 682 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ LL +V R DLKL++ SAT+D+D+ P+ GR+FP Sbjct: 683 DEAHERSLNTDVLFGLLREVV-SRRSDLKLIVTSATMDSDKFASFFGNVPIFHIPGRTFP 741 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-----G 237 V+ + P + AV A L G +L+F+PG +I+ +Q+ R+ Sbjct: 742 VDILFSKTPQEDYVEAAVKQALQIHLSGMVGDILIFMPGQEDIEVTSDQIVERLADLENA 801 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y L + Q K AP G+RK ++ATNIAETSLT++GI VVD ++ Sbjct: 802 PALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVVDSGYCKLKV 861 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQSD 356 F+PR G+ L +SQA+ QRAGRAGR PG L + + + PEI +++ Sbjct: 862 FNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCYRLYTQSAFKNEMLTTTIPEIQRTN 921 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 L+ +++ L G D ++D PP N+L + L +LGAL+ L+ G+ M Sbjct: 922 LANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGALTPTGRLMVEFP 981 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 DP L+ ML+ + + +A I ++L P + + + L Sbjct: 982 LDPALSKMLIVSCDMSCSADILIIVSMLSVPSIFYRPKGREEESDQVREKFSVPESDHLT 1041 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 LNV +++ + F A R+ ++ R QL Sbjct: 1042 YLNVYLQWKNNNYSSIWCNDHFIHTKAMRKVREVRAQL 1079 >UniRef50_P24384 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=10 Tax=Saccharomycetaceae RepID=PRP22_YEAST Length = 1145 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 162/521 (31%), Positives = 264/521 (50%), Gaps = 11/521 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 +LPV A+ EL+ A+ +++ TG+GK+T + L N G I +PRR+AA Sbjct: 482 TLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFSNYGMIGCTQPRRVAA 541 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE + K G VGY +R ++ GP+TR++ +T+G+L R DPE+S +++ Sbjct: 542 VSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPDTRIKYMTDGMLQREALLDPEMSKYSVIM 601 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ ALL R +LK+++ SATL++ + + P++ G++F Sbjct: 602 LDEAHERTVATDVLFALLKKAAIK-RPELKVIVTSATLNSAKFSEYFLNCPIINIPGKTF 660 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PVE Y P + A+ + + G +L+FL G EI E L R+ + Sbjct: 661 PVEVLYSQTPQMDYIEAALDCVIDIHINEGPGDILVFLTGQEEIDSCCEILYDRVKTLGD 720 Query: 239 ---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++L+ P+Y AL Q K P P+G RKVV ATNIAETS+TI+GI VVD ++ Sbjct: 721 SIGELLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKI 780 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEPEILQ 354 ++ R G+ +LI +SQA QR GRAGR PG L + + PEI + Sbjct: 781 NIYNARAGIEQLIVSPISQAQANQRKGRAGRTGPGKCYRLYTESAFYNEMLENTVPEIQR 840 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 +LS ++ L G +D + ++D PP +L A L L +L+ E +L+ G++M+ Sbjct: 841 QNLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSL 900 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 DP L+ L+S+ ++ + I ++L D + + + Sbjct: 901 FPMDPTLSRSLLSSVDNQCSDEIVTIISMLSVQNVFYRPKDRQLEADSKKAKFHHPYGDH 960 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 L LNV ++ F +R +D + Q++ Sbjct: 961 LTLLNVYTRWQQANYSEQYCKTNFLHFRHLKRARDVKSQIS 1001 >UniRef50_Q75EQ9 AAR020Wp n=2 Tax=Saccharomycetaceae RepID=Q75EQ9_ASHGO Length = 1112 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 152/521 (29%), Positives = 257/521 (49%), Gaps = 12/521 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAA 61 SLPV + L++A+ +++ TG+GK+T + L + G I +PRR+AA Sbjct: 448 SLPVFKMRETLVSAIRDNQFLVIVGETGSGKTTQITQYLDEEGFSVGGMIGCTQPRRVAA 507 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + K G+ VGY +R ++ TR++ +T+G+L DP +S +++ Sbjct: 508 VSVAKRVSEEMGCKLGEDVGYTIRFEDQTSRKTRIKYMTDGMLQVEALLDPTMSRYSVIM 567 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ +LL R DL++++ SATLD+++ + + PV+ G++F Sbjct: 568 LDEAHERTVSTDVLFSLLKQAALK-RPDLRVIVTSATLDSEKFSKYFLDCPVIKISGKTF 626 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PV+ Y P + A+ + + G +L+FL EI E L R+ Sbjct: 627 PVDVIYSETPQLDYIEAALDTVMEIHINESPGDILVFLTSQEEIDACCEILYERVQALKE 686 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++L+ P+Y AL Q K P P+G RKV+ ATNIAETS+TI+GI VVD + Sbjct: 687 TIQELLILPVYSALPSEVQSKIFEPTPKGSRKVIFATNIAETSITIDGIYYVVDPGYAKS 746 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 ++P+ G+ +L+ +SQ+ QR GRAGR PG L + R S PEI + Sbjct: 747 NIYNPKIGIEQLVVSPISQSQADQRKGRAGRTGPGKCYRLFTEAAFHREMVPNSVPEIQR 806 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAA 413 +L ++ L G +D ++D PP +++ A L L AL+ + L+ G++M+ Sbjct: 807 QNLEHTILMLKAMGINDLLNFDFMDPPPRSSMVHALEALYNLQALDEDGYLTQLGKRMSQ 866 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPA-WQQRSQQ 471 +P L+ L+++ + I A+L D ++ + Sbjct: 867 FPMEPALSKSLIASVEQGCSDEILTIIAMLSVQNVFYRPKDKIQETRYSKKHGFHHPFGD 926 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L LN+ +++ A F RR +D + QL Sbjct: 927 HLTLLNIHNRWQENNFSKSFCAENFLHERHLRRAKDVKEQL 967 >UniRef50_C4QXH4 DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase n=1 Tax=Pichia pastoris GS115 RepID=C4QXH4_PICPG Length = 1005 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 157/521 (30%), Positives = 249/521 (47%), Gaps = 12/521 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 SLPV ++ LL + V++ TG+GK+T + L G I +PRR+A Sbjct: 350 SLPVFSMKQMLLETVKNNKFVVIVGETGSGKTTQITQYLAEEGFNKGNMIIGCTQPRRVA 409 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E + + G VGY +R ++ T+++ +T+G+L R D LS ++ Sbjct: 410 AVSVAKRVSEEVGCRLGQEVGYTIRFEDNTSDVTKIKYMTDGMLQREAMVDKMLSKYSVI 469 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL RDDLK+++ SATLD+ + P++ GR+ Sbjct: 470 MLDEAHERTIATDVLFVLLKTAAMK-RDDLKIIVTSATLDSGKFSTYFENCPIIQIPGRT 528 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---- 236 FPVE Y P + + + G +L+FL G EI E L ++ Sbjct: 529 FPVEIFYTKEPELDYLQATLECVLSIHKNESRGDILVFLTGQEEIDTCCEVLYEKLIDLH 588 Query: 237 -GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 +++++ P+Y +L Q K P P G RKV++ATNIAETS+TI+GI V+D +V Sbjct: 589 QENELIILPIYSSLPSEMQSKIFEPTPVGKRKVIIATNIAETSITIDGIYYVIDPGFVKV 648 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 +DP+ G+ L+ +SQA QRAGRAGR PG L + + S PEI + Sbjct: 649 NAYDPKLGMDSLMVTPISQAQAKQRAGRAGRTGPGKCFRLYTETGYNKEMLPNSIPEIQR 708 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAA 413 +L+ ++ L G D ++D PP+ +L+A L L AL E L+ G++MA Sbjct: 709 QNLAHTILMLKAMGVQDLIGFEFMDPPPLKTMLSALEELYNLEALTEDGDLTELGRRMAD 768 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRSQQ 471 DP LA +L+ + + I ++L +L + + Sbjct: 769 FPMDPGLAKVLIKSIEFGCSEEMLSIVSMLSVQSIFYRPTGELRKKADEKRVRFNHPHGD 828 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + LNV + F + R +D R QL Sbjct: 829 HMTMLNVYEKWVRNGSSKEWCKDNFIHYRSLLRVRDVRTQL 869 >UniRef50_Q54NJ4 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 n=19 Tax=Eukaryota RepID=DHX15_DICDI Length = 727 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 161/520 (30%), Positives = 262/520 (50%), Gaps = 12/520 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 LPV + + + V+L TG+GK+T +P ++ I + + +PRR+A Sbjct: 76 ELPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVDAGLIRPGKMVGVTQPRRVA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E ++ + G+ VGY +R + T ++ +T+G+L R DP L+ ++ Sbjct: 136 AISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGMLLRESMSDPTLNKYDVI 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HER+L D+ L+ D+ + R DLKL++MSATL+ + Q+ AP++ GR Sbjct: 196 ILDEAHERTLSTDILFGLIKDILK-RRKDLKLIVMSATLEAGKFQKYFENAPLIKVPGRL 254 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA----SRI 236 PVE Y A + AV + +G +L+FL G EI+ ++ R Sbjct: 255 HPVEIFYTEEAAKDYLESAVRTVIDIHTNEGTGDILVFLTGEEEIEDTCAKIQRETRERG 314 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY +L + Q K + RK +++TNIAETSLTI+GI VVD + Sbjct: 315 LPPMKTLPLYSSLPIYQQSKIFDTCKE--RKCIVSTNIAETSLTIDGIVFVVDPGFSKQK 372 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA-AQSEPEILQS 355 ++PR+ + L+ +S+AS QRAGRAGR PG L ++ + Q+ PEIL+S Sbjct: 373 TYNPRSRVESLLVAPISKASANQRAGRAGRTRPGKCFRLYTEKAFKELMIQQTHPEILRS 432 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 +L+ ++++LL+ G D ++D P L+ A +L LGAL+ E +L+ G M+ Sbjct: 433 NLASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGALDDEGQLTEIGSIMSEF 492 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQLL 473 DP+L+ ML+ + + IAA+L P M D + + ++ L Sbjct: 493 PLDPQLSKMLIVSAERSCSNEILTIAAMLSAPNCFMRPKDNRIEADSAKKSFDHFDGDHL 552 Query: 474 KRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 LNV + F + A ++ R QLA Sbjct: 553 TMLNVYHSFKKNGEDPTWCYDNFLNHRAIKQADSVRSQLA 592 >UniRef50_Q5KGT3 Pre-mRNA splicing factor, putative n=7 Tax=Dikarya RepID=Q5KGT3_CRYNE Length = 1261 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 158/518 (30%), Positives = 257/518 (49%), Gaps = 10/518 (1%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP AV EL+ + +++ TG+GK+T L L NG I +PRR+AA Sbjct: 558 LPAFAVREELMGMIRDHQVLVVVGETGSGKTTQLGQFLYEDGYCANGMIGCTQPRRVAAM 617 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + G+TVGY +R ++C +T+++ +T+GVL R + +L ++IL Sbjct: 618 SVAKRVSEEMECTLGETVGYAIRFEDCTSKDTKIKFMTDGVLLRESLNEGDLDRYSVIIL 677 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ + LL + R DLKL++ SAT++ ++ Q A GR+FP Sbjct: 678 DEAHERSLSTDILMGLLRKIL-TRRRDLKLIVTSATMNAEKFSQFFGNAATYTIPGRTFP 736 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-----G 237 VE + P D A+ L G +L+F+ G +I+ + + R+ Sbjct: 737 VEIFHSKSPCEDYVDSAIKQVLQIHLSSSQGDILVFMTGQEDIECCCQVIEERLSQLDDP 796 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y + + Q K P P G RKVV+ATNIAETSLT++GI VVDC ++ Sbjct: 797 PPLAVLPIYSQMPADLQAKIFQPTPDGRRKVVVATNIAETSLTVDGILYVVDCGYSKLKV 856 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQSD 356 ++P+ G+ L +SQA+ QRAGRAGR PG L + A + PEI +++ Sbjct: 857 YNPKVGMDALQITPISQANCGQRAGRAGRTGPGFCYRLYTETAYLNELFASNIPEIQRTN 916 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 L+ ++ L G + + ++D PP N+L + L +LGAL+ L++ G+KM+ Sbjct: 917 LANTVLLLKSLGVKNLLEFDFMDPPPQENILNSMYQLWVLGALDNVGNLTSIGRKMSDFP 976 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 +P LA ML+ + + ++ I ++L P + + L Sbjct: 977 MEPSLAKMLIVSVDYQCSSEMLTIVSMLSVPSVFYRPPQRAEESDAAREKFFVPESDHLT 1036 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L+V + F R+ ++ R QL Sbjct: 1037 LLHVYTQWKSNGYSDSWCMKHFLHPKLMRKAREVRGQL 1074 >UniRef50_C4M6S9 Helicase, putative n=3 Tax=Entamoeba RepID=C4M6S9_ENTHI Length = 953 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 171/637 (26%), Positives = 281/637 (44%), Gaps = 63/637 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 LP+ ++ +L+ ++ ++L TG GK+T L Q L G NG+I +PRR+A Sbjct: 292 ELPIYSMRNKLMESIKKNQIIILIGETGCGKTTQL-TQYLDEDGYSKNGRIGCTQPRRVA 350 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V+QR+AE + K G+ VGY +R ++ TR++ +T G+L R D +L ++ Sbjct: 351 AISVSQRVAEEMKVKLGEEVGYSIRFEDKTTEKTRIKYMTNGMLLREYLVDRDLPQYKVL 410 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HER++ D+ LL + + R + KL+I SATLD D+ +AP++ GR+ Sbjct: 411 ILDEAHERTVGIDILFGLLKETIK-RRPEFKLIITSATLDADKFSIYFNKAPIIHIPGRT 469 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--- 237 FPVE+ YL P + L Q G +L FL G EI + ++ Sbjct: 470 FPVEKLYLEEPEMDYIQSGIETIMKIHLTQPPGDILFFLTGQEEIDSTCSIINEKVQKLD 529 Query: 238 ---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++ P+Y +LS Q++ PAP RK ++ATNIAETS+TI+GI VVD + Sbjct: 530 KRYPKLIALPIYASLSTEQQKRIFEPAPPFTRKCIVATNIAETSITIDGIYFVVDSGFVK 589 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 +PR G+ +L+ +SQA QRAGRAGR PG L ++ S PEI Sbjct: 590 QKVHNPRLGMDQLLITPISQACADQRAGRAGRTGPGKCYRLYTEKAYLNEMPIVSIPEIQ 649 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 +++L+ ++ L G ++ ++D P L++A L + AL+ + +L+ G+KMA Sbjct: 650 RANLADTVLILKAIGINNVIDFDYMDPPMHNTLISALHHLYAISALDDDGKLTQLGRKMA 709 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQ 471 +P LA ML+ ++ + I A L + + R + + Sbjct: 710 EFPLEPPLAKMLIVSEQFGCSEEVVTIVAALSVGNLFIRPKEKEEEADRRKRQLSSSAGD 769 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFA---------------------------------- 497 L L V + + Sbjct: 770 HLTMLQVYNNWIKNGKSPSWCKENYINFRSLYKCEDIRKQLIKIMKKYHIQLISSHNNPI 829 Query: 498 -----------DRIARRRGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASP 544 A+R Q+G L +G + +L EW++ L+ + Sbjct: 830 PIIKSIVSGFFVHAAKRDPQEGYRTLVDGQQVFIHPTSSLFGRNPEWVVYHELVLTTKEY 889 Query: 545 DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 I+ +D L++ P Q+SD + ++ Sbjct: 890 MREII---AIDPQWLIELAPAFYQKSDGTQLNERMRK 923 >UniRef50_P45018 ATP-dependent RNA helicase hrpA homolog n=53 Tax=Bacteria RepID=HRPA_HAEIN Length = 1304 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 187/710 (26%), Positives = 316/710 (44%), Gaps = 78/710 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 SLPV+ E+ + ++++ TG+GK+T LP L N G I +PRR+AA Sbjct: 82 SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE L + G VGY++R + + NT+++++T+G+L IQ D L+ +I Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSCLI 201 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLKL+I SAT+D +R + AP++ GR++ Sbjct: 202 IDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTY 261 Query: 182 PVERRYLPLPAHQRFDDAVAV--ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE RY P+ D + A E+ + G +L+F+ G EI+ E L + Sbjct: 262 PVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDILIFMNGEREIRDTAEALQKQNLKH 321 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + PL+ LS +Q K P G+ ++VLATN+AETSLT+ I+ V+D R++R+ Sbjct: 322 TEILPLFARLSAQEQNKIFH--PSGLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYS 379 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 RT + RL + +SQAS QR GR GR+ GI + L ++E ++PEIL+++L+ Sbjct: 380 YRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLAS 439 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--------EGERLSAQGQKM 411 +++++ G D ++D P ++ +LL+ LGA E L+ G+++ Sbjct: 440 VILQMTALGLDDIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQL 499 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQ 470 A L DPRLA M++SA N I + L + PR + A + + Sbjct: 500 AQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQEKQQASDEKHRRFADKKS 559 Query: 471 QLLKRLNVR--------------------------------------------------- 479 L LN+ Sbjct: 560 DFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLNYLRIREWQDIYHQIRLTVREMSLPIN 619 Query: 480 GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLL 537 +A+ I L I + + +Y A + N L + +W++A L Sbjct: 620 SEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIFPNSVLFKKQPKWVMAAEL 679 Query: 538 LQGSASPDARILLALLVDIDELVQRCPQLVQQSDTV-EWDDAQGTLKA-WRRLQIGQLTV 595 ++ S + ++ + + L+++S +V W ++G + A + G V Sbjct: 680 VETSKLWG---RMVAEIEPEWIEPLAEHLIKKSYSVPLWSKSRGAVIADEKVTLYGVPIV 736 Query: 596 KVQPL--AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKW 643 V+P+ + + +G W + + + + Sbjct: 737 AVRPVNYGAIDPTVSREIFIQSALVEG----GWNTKHKFFKENQRLVREV 782 >UniRef50_C5KUX0 ATP-dependent RNA helicase DHX8, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KUX0_9ALVE Length = 1239 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 164/526 (31%), Positives = 258/526 (49%), Gaps = 14/526 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLA 60 LP+ + +LL A+ +++ TG+GK+T + Q +A G +G I +PRR+A Sbjct: 583 GLPIFKLRSQLLQAMAENQVLIVIGETGSGKTTQM-TQYMAEAGYADHGIIGCTQPRRVA 641 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A VA+R+AE + G VGY +R ++ P TR++ +T+G+L R DP L ++ Sbjct: 642 AITVAKRVAEEYGCRLGQEVGYTIRFEDHTSPETRIKYMTDGMLLREALADPLLKKYSVI 701 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ L + + R+DLKL++ SATLD ++ + ++ + GR+ Sbjct: 702 MLDEAHERTIHTDVLFGLCKEAIRE-RNDLKLIVTSATLDAEKFSRYFFDSHIFTIPGRT 760 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---- 236 FPVE Y P A+ L ++ G +L+FL G EI + L R+ Sbjct: 761 FPVEILYSNEPEEDYVQAALMTVMQIHLTEQPGDILVFLTGQEEIDTACQLLDERMAQLA 820 Query: 237 ---GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 ++ +Y A Q PAP G RK V+ATNIAE S+TI+GI VVD Sbjct: 821 PMNPPPLIPMGVYAAQPSEVQSSIFEPAPPGSRKCVVATNIAEASITIDGIYFVVDPGFA 880 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEPEI 352 ++ F+ +T + LI +SQA+ QRAGRAGR PG L ++ + PEI Sbjct: 881 KIKTFNAKTQMDALIVTPISQANARQRAGRAGRTGPGKCYRLYTEKAFRTEMLPSAVPEI 940 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 +S+LS +++ L G +D ++D PPV L+ + L LGAL+ E L+ G+KM Sbjct: 941 QRSNLSNVVLTLKAMGINDLLGFDFMDAPPVQTLINSLEALWQLGALDDEGLLTKLGRKM 1000 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQ 470 A P + ML+++ + A A + A+L D + + + Sbjct: 1001 AEFPMPPEQSKMLLASVDLGCADEAITVVAMLSVQNVFYRPKDKQAVADQKKSKFNSPEG 1060 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM 516 + L V + + AP F + R+ QD R QL M Sbjct: 1061 DHVTLLEVYKAWSRNRFSAPWCYENFIQVRSLRKAQDVRKQLIGIM 1106 >UniRef50_D1ZEJ8 Whole genome shotgun sequence assembly, scaffold_22 n=1 Tax=Sordaria macrospora RepID=D1ZEJ8_SORMA Length = 1177 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 168/526 (31%), Positives = 256/526 (48%), Gaps = 16/526 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV A L A+ ++L TG+GK+T +P L G K+ +PRR+A Sbjct: 274 SLPVYAYRDAFLDAIKEYQVLILVGETGSGKTTQIPQYLHEAGYTEGGMKVACTQPRRVA 333 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ + K G VGY +R ++C T L+ +T+G+L R + P L G + Sbjct: 334 AMSVAARVADEMGVKVGREVGYSIRFEDCTSDKTILKYMTDGMLLREMVTSPTLEGYSAI 393 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER++ D+ LAL+ D+ + R DLKL+I SATL+ ++ +AP+ GR Sbjct: 394 MIDEAHERTVHTDILLALIKDLTRA-RPDLKLIISSATLNAEKFSTYFDDAPIFNVPGRV 452 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ---LASRIG 237 PV+ Y P + ++ Q G +L+FL G EI + E+ + ++G Sbjct: 453 HPVDVYYTSAPESNYLEASLVTVFQIHATQPEGGILVFLTGQEEIDKACERVEEIKRKLG 512 Query: 238 S---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 S +++ P+Y + Q K P P G RKVV +TNIAETSLTI+GI V+DC + Sbjct: 513 SRVPEIIPLPIYANMPSELQAKIFEPTPPGARKVVFSTNIAETSLTIDGIVYVIDCGYVK 572 Query: 295 VARFDP--RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPE 351 F P TG + L S+A+ QR GRAGR+ PG L K PE Sbjct: 573 ENTFSPVGTTGQSTLAVVPCSRAAANQRMGRAGRVRPGKCFRLYTKFAYLSEMDESPTPE 632 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQK 410 I ++ LS ++++L G D +LD PP L+ + +L LGAL +L+ G++ Sbjct: 633 IQRTSLSSVVLQLKALGIEDLLGFDFLDPPPTELLIKSLNMLYALGALNSAGQLTRVGRQ 692 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG--NSDLGVAFSRNQPAWQQR 468 M +P LA L++A + I ++L E + D V + + + Sbjct: 693 MGEFPAEPMLAKALIAATTEGCVDEMLTIVSMLGEVATLFFCPKDKKVHADSARARFTVK 752 Query: 469 S-QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 L LNV D+ F + + R +D R QLA Sbjct: 753 DGGDHLTLLNVYNQWVDADYSPIWAKENFLTQRSLTRARDVRDQLA 798 >UniRef50_A0D4B2 Chromosome undetermined scaffold_37, whole genome shotgun sequence n=4 Tax=Oligohymenophorea RepID=A0D4B2_PARTE Length = 1059 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 151/519 (29%), Positives = 246/519 (47%), Gaps = 13/519 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAAR 62 LPV EL+ L ++ TG+GK+T L L N G I +PRR+AA Sbjct: 317 LPVFHCRSELVQLLHDNRVCIIVGETGSGKTTQLTQYLYEEGYTNTGVIGCTQPRRVAAV 376 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R+AE + + G VGY +R ++ +T ++ +T+GVL R +DP+L VI+ Sbjct: 377 SVAKRVAEEMGVELGSKVGYAIRFEDYTSKDTVIKYMTDGVLLRESLQDPDLEKYSAVIM 436 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ +L V Q R D++++I SAT++ + P+ GR+FP Sbjct: 437 DEAHERSLNTDVLFGILKKVAQRRR-DIRIVITSATMNAKKFSDFFGGVPIYKIPGRTFP 495 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG----- 237 V+ R+ PA A+ ++Q G +L+F+ G +I+ LA + Sbjct: 496 VDVRFEKAPAQDYVRSAIKKTIEVHIQQPPGDVLIFMTGQEDIETTCYLLAEELNKLSEA 555 Query: 238 -SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 +L+ P+Y L +Q + + RK ++ATNIAETSLT++G++ V+D ++ Sbjct: 556 TPPLLILPIYSQLRSEEQARIFEKSE--FRKCIVATNIAETSLTLDGVKYVIDTGYCKMK 613 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQS 355 ++PR G+ L +SQA+ QR GRAGR PGI L + + + PEI ++ Sbjct: 614 VYNPRIGMDALQVTPISQANADQRKGRAGRTGPGICFRLYSSLNYRQDMLENNIPEIQRT 673 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 +L+ +++ L ++ ++D PP +L A L +LGAL+ L+ G+KM+ Sbjct: 674 NLANVVLLLKSLNINNLLDFDFMDPPPQDTILNAMYQLWVLGALDNVGELTELGRKMSEF 733 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLL 473 DP L+ ML+ + ++L P D + L Sbjct: 734 PLDPPLSKMLIKGDQLGCTEEILTVVSMLSVPGIFYRPKDREAESDAAREKLFVGESDHL 793 Query: 474 KRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 LNV F + R+ ++ R QL Sbjct: 794 TMLNVFEQWKRHEFSPEWCNEHFVQAKSMRKVREVRAQL 832 >UniRef50_Q9P774 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 n=1 Tax=Schizosaccharomyces pombe RepID=PRP16_SCHPO Length = 1173 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 159/519 (30%), Positives = 259/519 (49%), Gaps = 10/519 (1%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAAR 62 LP AV +LL+ + +++ TG+GK+T L L NG I +PRR+AA Sbjct: 492 LPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAM 551 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + + G TVGY +R ++ GP+T ++ +T+GVL R L ++I+ Sbjct: 552 SVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIM 611 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ + LL V R D+KLL+ SAT+++ + AP GR++P Sbjct: 612 DEAHERSLNTDILMGLLKKVL-SRRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYP 670 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG----- 237 V+ + P + AV L Q +G +L+F+ G +I+ E +A R+ Sbjct: 671 VDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLNQLHDA 730 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y + + Q K A G+RKVV+ATNIAETSLT+ GI VVD ++ Sbjct: 731 PRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKM 790 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQSD 356 ++ + G+ L +SQA+ QRAGRAGR PGI+ L + R + PEI +++ Sbjct: 791 YNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAYRLYTEMAYIREMFETTLPEIQRTN 850 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALG 415 LS ++ L G + + ++D+PP L+A+ L LGAL+ +L+ G+KM+ Sbjct: 851 LSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLTTLGKKMSLFP 910 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 DP L+ +++ A++ I ++L P + + + L Sbjct: 911 MDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERAEESDAAREKFNVPESDHLM 970 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 LN+ + + F +R +D R QL Sbjct: 971 LLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLV 1009 >UniRef50_P43329 ATP-dependent RNA helicase hrpA n=101 Tax=Bacteria RepID=HRPA_ECOLI Length = 1300 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 186/712 (26%), Positives = 318/712 (44%), Gaps = 87/712 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV+ ++L A+ V+++ TG+GK+T LP + GI G I +PRRLAA Sbjct: 76 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAA 135 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+AE L +PG +GY++R + V NT ++++T+G+L IQ+D L +I Sbjct: 136 RTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTII 195 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK++I SAT+D +R + AP++ GR++ Sbjct: 196 IDEAHERSLNIDFLLGYLKELLP-RRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTY 254 Query: 182 PVERRYLPLPAHQRFDD-----AVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE RY P+ + A+ A E+ ++ G +L+F+ G EI+ + L Sbjct: 255 PVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLN 314 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS ++Q + R++VLATN+AETSLT+ GI+ V+D R++ Sbjct: 315 LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 372 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ RT + RL + +SQAS QR GR GR+ GI + L +++ ++PEIL+++ Sbjct: 373 RYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTN 432 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE------RLSAQGQK 410 L+ +++++ G D A +++ P N+ RLL+ LGA+ + +L+ G++ Sbjct: 433 LASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQ 492 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRS 469 ++ L DPRLA M++ A+ A I + L + PR D A + + Sbjct: 493 LSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKE 552 Query: 470 QQLLKRLNVRG------------------------------------------------- 480 L +N+ Sbjct: 553 SDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPV 612 Query: 481 --GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE--WLIAPL 536 A+ I L I + Y A + L + W++ Sbjct: 613 NSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAE 672 Query: 537 LLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV 595 L++ S RI A +D + + L++++ W+ AQG + A ++ + L + Sbjct: 673 LVETS-RLWGRI--AARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPI 729 Query: 596 ---KVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWL 644 + ++ + + +G + R + L Sbjct: 730 VAARKVNYSQIDPALCRELFIRHALVEGD-----------WQTRHAFFRENL 770 >UniRef50_Q92620 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 n=55 Tax=Fungi/Metazoa group RepID=PRP16_HUMAN Length = 1227 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 162/519 (31%), Positives = 262/519 (50%), Gaps = 12/519 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP+ AV ELLT + V++ TG+GK+T L Q L G G I +PRR+AA Sbjct: 532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQL-TQYLHEDGYTDYGMIGCTQPRRVAA 590 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + G+ VGY +R ++C NT ++ +T+G+L R R+ +L +I Sbjct: 591 MSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAII 650 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ LL +V R DLKL++ SAT+D ++ P+ GR+F Sbjct: 651 MDEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTF 709 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI----- 236 PV+ + P + AV + L G +L+F+PG +I+ +Q+ + Sbjct: 710 PVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELEN 769 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + + P+Y L + Q K AP G+RK ++ATNIAETSLT++GI V+D ++ Sbjct: 770 APALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLK 829 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQS 355 F+PR G+ L +SQA+ QR+GRAGR PG L + + + PEI ++ Sbjct: 830 VFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRT 889 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 +L+ +++ L G D Q ++D PP N+L + L +LGAL+ L++ G+ M Sbjct: 890 NLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEF 949 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLL 473 DP L+ ML+ + + ++ I ++L P + + + L Sbjct: 950 PLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHL 1009 Query: 474 KRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 LNV +++ F A R+ ++ R QL Sbjct: 1010 TYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQL 1048 >UniRef50_Q65SL6 HrpA protein n=9 Tax=Pasteurellaceae RepID=Q65SL6_MANSM Length = 1337 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 182/720 (25%), Positives = 312/720 (43%), Gaps = 108/720 (15%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV+ E+ + V+++ TG+GK+T LP L G G I +PRR+AA Sbjct: 83 NLPVSQRKTEIQKLIAQNQVVIVAGETGSGKTTQLPKMCLELGFGQKGLIGHTQPRRIAA 142 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE + + G VGY++R + +G +T+++++T+G+L IQ D L+ +I Sbjct: 143 RSVAARIAEEMQTELGGIVGYKVRFNDQIGEDTQIKLMTDGILLAEIQTDRFLNRYDCLI 202 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R + AP++ GR++ Sbjct: 203 IDEAHERSLNNDFILGYLKQLLP-RRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTY 261 Query: 182 PVERRYLPLPAHQRFDDAVAV--ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE RY P+ + D + A E+ + G +L+FL G EI+ E L + Sbjct: 262 PVEVRYRPVAETEEQDQLQGILNAVDELQAEGRGDILIFLSGEREIRDTAEALEKQNLRH 321 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + PLY LS +Q K P G+ ++VLATN+AETSLT+ GI+ V+D R++R+ Sbjct: 322 TEILPLYARLSAQEQNKIFH--PGGLNRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 379 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 RT + RL + +SQAS QR GR GR+ G+ + L +++ ++PEIL+++L+ Sbjct: 380 YRTKVQRLPIEPISQASANQRKGRCGRVSEGVCIRLYSEQDFNNRPEFTDPEILRTNLAS 439 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER---------------- 403 +++++ G D ++D P ++ +LL+ LGA E ++ Sbjct: 440 VILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLLEELGAFEWQKSPPSAFGTSPRKRGEG 499 Query: 404 -------------------------LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAK 438 L+ G+++A L DPRLA ML+SA + Sbjct: 500 NLASNSSLPPFTGGAGHSPEGGKRVLTQTGRQLAQLPVDPRLAKMLLSAVDLGCVLEVMI 559 Query: 439 IAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG----------------- 480 I A L + PR + + + + L LN+ Sbjct: 560 IVAALSIQDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWNYIQEQQKVLSKNQFRRL 619 Query: 481 ----------------------------------GEADSSLIAPLLAGAFADRIARRRGQ 506 A I L I + + Sbjct: 620 CQKDYLNYLRVREWQDIYHQIRLTVREMGLPINSEPAQYPQIHSALLSGLLSHIGMKEAE 679 Query: 507 DGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 +Y A + N L + +W++A L++ S + +D + + Sbjct: 680 KQQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSKLWG---RMVAEIDPEWVEPLAK 736 Query: 565 QLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV-KVQPL--AKPSEDELHQAMLNGIRDKG 620 L++ S W ++G + A ++ + + + +P+ + + +G Sbjct: 737 HLIKSSYSEPRWSKSRGQVIANEKVSLYGVPIVASRPVNYGAIDPQTSREIFIQSALVEG 796 >UniRef50_B6AI28 Pre-mRNA-processing protein 8, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AI28_9CRYT Length = 878 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 167/573 (29%), Positives = 270/573 (47%), Gaps = 61/573 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 SSLPV E+L++L+ P +++ TG+GK+T +P L A G I +PRR+A Sbjct: 197 SSLPVIKYREEILSSLEKYPILIVVGETGSGKTTQIPQYLYEAGYAEKGTIACTQPRRVA 256 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+++ +N + G VGY +R ++C +T+++ +T+G+L R +P+LSG + Sbjct: 257 AMSVANRVSKEMNCRLGSKVGYTIRFEDCTNEDTKIKYMTDGILLREFLSNPDLSGYSCL 316 Query: 121 ILDEFHERSLQADLALALLLDVQQGLR----------------DDLKLLIMSATLDNDRL 164 ++DE HERSL D+ L+ DV + + KL+I SATL+ ++ Sbjct: 317 LIDEAHERSLHTDVLFGLVKDVSKFRNFKDDNLSTKSDCEDSTEPFKLIISSATLEAEKF 376 Query: 165 QQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQES------------ 212 + +P++ GR +PV+ Y P D V L Q Sbjct: 377 GKYFDNSPIIYIPGRRYPVDIYYTKAPEANFIDATVVTVLQIHLSQLKKSNKTEGIIDNN 436 Query: 213 ----------------------GSLLLFLPGVGEIQRVQEQLASRIG------SDVLLCP 244 G +L FLPG EI+ E L ++ ++++ P Sbjct: 437 STIKSLDNIGMNFSRTRIIPTGGDILCFLPGQQEIEECMEMLNKKMLGKGKEVPELIVLP 496 Query: 245 LYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGL 304 +Y +L Q + + PQG RKVVLATNIAET+LTI+ I V+DC + ++P+TGL Sbjct: 497 IYASLPSEQQAQIFISTPQGARKVVLATNIAETALTIDNIGFVIDCGFCKQNSYNPKTGL 556 Query: 305 TRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEPEILQSDLSGLLME 363 L+T S+A+ QRAGRAGR+ PG L K + PEI + +L +++ Sbjct: 557 DSLVTIPCSRAAANQRAGRAGRVRPGKCFRLYTKTSFYMEMEPSNTPEIQRCNLGNVVLM 616 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAA 422 L G D ++D PP L+ A LL L AL+ + L+ G+KMA L DP + Sbjct: 617 LKSLGIDDLLHFDFMDPPPPETLVKALELLYGLNALDDKGDLTNIGRKMAELPLDPMYSK 676 Query: 423 MLVSAKNDDEAATAAKIAAILE--EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 ++++++ + I ++L + D + ++ + L LNV Sbjct: 677 VVLASQRYKVVDESIIIVSMLSLGNTVFIRPRDKSTQADNIRKSFFRSGGDHLTLLNVYK 736 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 +S F + +R +D R QL+ Sbjct: 737 QWENSGESNLWCFENFIHGKSMKRARDIRIQLS 769 >UniRef50_B7VPK9 ATP-dependent helicase n=201 Tax=Bacteria RepID=B7VPK9_VIBSL Length = 1355 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 184/668 (27%), Positives = 307/668 (45%), Gaps = 82/668 (12%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL-LAHPGINGKIILLEPRRLAAR 62 LPV+ ++ A+ V+++ TG+GK+T LP G G I +PRRLAAR Sbjct: 125 LPVSQKRDDIAKAIAENQVVIVAGETGSGKTTQLPKICSELGRGRFGLIGHTQPRRLAAR 184 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+AE + + G+ VGY++R + + NT+++++T+G+L IQ D LS +I+ Sbjct: 185 SVANRIAEEMETQLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFLSQYDTIII 244 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D + L ++ R DLK++I SAT+D +R + AP++ GR++P Sbjct: 245 DEAHERSLNIDFIMGYLRELLPK-RPDLKVIITSATIDPERFSKHFNNAPIIEVSGRTYP 303 Query: 183 VERRYLPLPAHQRFDDAVAV-----ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 V+ RY PL D + A E+ + G +L+F+ G EI+ + L+ R Sbjct: 304 VDTRYRPLGGDDSDSDRDQIEGIFEAVDELCDEGQGDILIFMNGEREIRDTADSLSKRNL 363 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 D + PLY LS +Q + R++VLATN+AETSLT+ GI+ V+D R++R Sbjct: 364 RDTEIVPLYARLSAGEQNRIFQS--HTGRRIVLATNVAETSLTVPGIKYVIDPGTARISR 421 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + RT + RL + VSQAS QR GR GR+ GI + L ++E E ++PEIL+++L Sbjct: 422 YSYRTKVQRLPIEPVSQASANQRKGRCGRVAEGICIRLYSEEDFESRPEFTDPEILRTNL 481 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL---------------EGE 402 + +++++ G D +++ P N+ RLL+ LGA+ + + Sbjct: 482 ASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLLEELGAIAIVEPSANKNKNHGDDKK 541 Query: 403 RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRN 461 +L+A G+K+A L DPRLA M++ A ++ IA+ L + PR SD + Sbjct: 542 KLTAIGRKLAKLPIDPRLARMVIEAPSNRCLHEVMVIASALSIQDPRERPSDKQQSSDDK 601 Query: 462 QPAW------------------------------QQRSQQLLKRLNVR------------ 479 + +Q Q L L +R Sbjct: 602 HKRFFDKESDFITFVNLWDYVKQQQKALSSNQFRKQCKQDYLNYLRIREWQDVYFQIHQA 661 Query: 480 ---------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDAL--SR 528 I L I + + YQ A + L + Sbjct: 662 MRELDTKLNTEPGSYDGIHMSLLSGLLSHIGMKDQEKNEYQGARNARFHIFPASGLFKKQ 721 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRR 587 +W+++ L++ S I + + + L+++S W Q + A + Sbjct: 722 PKWIMSAELVETSKLWGRVI---AKIQPEWIEPLAKHLIKRSYSEPHWSKKQAAVMAHEK 778 Query: 588 LQIGQLTV 595 + + + + Sbjct: 779 VMLYGIPI 786 >UniRef50_A3FQE8 Putative uncharacterized protein n=2 Tax=Cryptosporidium RepID=A3FQE8_CRYPV Length = 867 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 164/555 (29%), Positives = 255/555 (45%), Gaps = 49/555 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 +SLPV +++ +L+ P +++ TG+GK+T +P L NG I +PRR+A Sbjct: 198 NSLPVVKFKEQIIKSLEEHPILIVVGETGSGKTTQIPQYLFEAGYYKNGIIACTQPRRVA 257 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ + + G VGY +R ++C T ++ +T+G+L R +P+L + Sbjct: 258 AMSVAARVAKEMGSRLGGLVGYSIRFEDCTSEETVVKYMTDGILLREFLSEPDLKNYSCI 317 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDL-----------------------KLLIMSA 157 ++DE HERSL D+ L+ DV + D+ KL+I SA Sbjct: 318 LIDEAHERSLHTDILFGLVKDVSRFRNSDIYLENDIGKNGKIEGCANYNKNPFKLIISSA 377 Query: 158 TLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQES----- 212 TL+ ++ + AP++ GR FPV Y P D V Q Sbjct: 378 TLEANKFSEYFDNAPIIYIPGRRFPVNIYYTKSPEANFIDGTVVTVLQIHFSQIKRSNEN 437 Query: 213 ----------GSLLLFLPGVGEIQRVQEQLASRI------GSDVLLCPLYGALSLNDQRK 256 G +L FLPG EI+ Q L SR+ ++++ P+Y +L Q K Sbjct: 438 MSSKKIIPVGGDILCFLPGQQEIEEAQALLESRLVNKDPNLPELIILPIYSSLPSEQQAK 497 Query: 257 AILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQAS 316 P G RKVVLATNIAET+LT++ I VVDC + ++P+TGL LIT SQA+ Sbjct: 498 IFQTTPYGFRKVVLATNIAETALTVDNIGFVVDCGFCKQNSYNPKTGLESLITVPCSQAA 557 Query: 317 MTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQM 375 QR+GRAGR+ PG L K + PEI + +L ++ + G D Sbjct: 558 ANQRSGRAGRVRPGKCFRLYTKLSFTTEMEVSNVPEIQRCNLGNAVLVIKSLGIDDLLHF 617 Query: 376 SWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 ++D PP L+ A LL LGAL+ + L+ G+ MA L DP M+++++ Sbjct: 618 DFMDPPPPETLIRALELLYSLGALDDKGELTKVGRTMAELPIDPMHGKMVLASQKYSVVN 677 Query: 435 TAAKIAAILEE--PPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLL 492 A I ++L + + + A+ LL LNV + Sbjct: 678 EATTIVSMLSVGNSIFIRPKEKAKQADSIRKAFTVHGGDLLTLLNVYNQWQSNDFSGYWC 737 Query: 493 AGAFADRIARRRGQD 507 F + ++ +D Sbjct: 738 YDNFLQVKSLKKARD 752 >UniRef50_UPI00016C44CB ATP-dependent helicase HrpB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44CB Length = 882 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 279/889 (31%), Positives = 407/889 (45%), Gaps = 98/889 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAAR 62 LP+ LPELL AL + +L APTGAGK+T +P L+ NG +++LEPRR+AAR Sbjct: 6 LPIDDALPELLAALRASGAAVLRAPTGAGKTTRVPPALIDSGLAGNGLVLMLEPRRVAAR 65 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+R+A N GDT GY++R TR+ VVT GVL R + DP L GV V+ Sbjct: 66 AAARRMALEDNSPLGDTFGYQVRFDKKSSARTRVLVVTPGVLLRRLHDDPFLDGVAGVVF 125 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER L+ADLA + +++ +R +L +++MSAT+D + L PVV S+GR+FP Sbjct: 126 DEFHERGLEADLAFGMARLIRENVRPELNVVVMSATVDPSAVSAYLGGCPVVDSQGRTFP 185 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS-RIGSDVL 241 VE RY + AVA A ++L +SG +L FLPG+ EI++ ++L S S L Sbjct: 186 VEVRYRARRSDTPVHTAVADAVRDLLGTQSGDVLAFLPGLREIRQTADELDSFARESGAL 245 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 + PL+G L Q +A+ RKVVLATN+AETS+T++G+ VVD RV F+P Sbjct: 246 VLPLHGDLPPEQQDRALQKL--DRRKVVLATNVAETSVTVDGVTAVVDSGLARVMEFEPS 303 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 G+ RL +++AS QR GRAGR PG+ + L + Q+ PEI + DL G + Sbjct: 304 VGMDRLRLVPIARASADQRTGRAGRTAPGVCVRLWDEPGHRARPEQAAPEIKRVDLCGAV 363 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLA 421 ++L G D + WLD P + + +LL LG L+ G+ A L PRL Sbjct: 364 LQLAALGEPDVRKFPWLDAPTEEAVEQSLKLLDQLGLFVNGALTPLGEIAAGLPVHPRLG 423 Query: 422 AMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQ------LLK 474 +L+ + A AA AA+L E P + D G P + Sbjct: 424 RLLLEGQRLGCAPRAALAAALLSERDPFLREFDSGPPVRTAPPTVSDVLDRVEALEAFEA 483 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIAR--RRGQDGRYQLANGMGAM----LDANDALSR 528 R + G D++AR +G L +G G +L Sbjct: 484 RGRLDGPLGRLHRGGAYAVLEVRDQLARLVGKGPPPPNPLPSGRGREGISGTSRESSLLS 543 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 ++ L L P + + + + P + + + + + Sbjct: 544 G---VSKLPLPSGRGPGGGLPSSDDALLQCVFAAYPDRLARRREPG---------STKAV 591 Query: 589 QIGQLTVKVQPLAKPSEDELHQAM-------------LNGIRDKGLSV--------LNWT 627 +G V++ P + SE EL + +G+ + L + + Sbjct: 592 TVGGRGVRLAPASGVSEPELFVCVDVDAGGTDSFVRQASGVEREWLPAERVSTRIEITFD 651 Query: 628 AEAEQLRLRLLCAAKWLPEYDWPA-VDDES---------LLAALETWLL----PHMTGVH 673 + E+L R L + A + DES LE L P Sbjct: 652 EKTERLAARKATRFGDLLLDELNAHIADESEAASVLARAAAERLEKVLPAPDSPAGAFRT 711 Query: 674 SLRGLKSL------------DIYQALRGL----------------------LDWGMQQRL 699 +R L+ D+ +AL L L + Q + Sbjct: 712 RVRCLREWVPELDLPAFEAADLREALEALCRNRRSLADVRNGPWLDFLRGCLTYQQLQAV 771 Query: 700 DSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQ 759 +SE P H VP+GS I + Y E PP LA R+QEMFG PT+ +GR ++L LL+P Sbjct: 772 ESEAPGHLEVPSGSHIQLVYEEGRPPILAARIQEMFGLTETPTVGRGRRKVLLHLLAPNY 831 Query: 760 RPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 RP Q+T DL+ FW+ Y V+KE++ RYPKH WPDDP R K+ Sbjct: 832 RPQQVTEDLASFWRNGYPIVRKELRARYPKHSWPDDPLTAEAVRGAKRR 880 >UniRef50_B3PC35 Putative HrpA-like helicase n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PC35_CELJU Length = 814 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 281/825 (34%), Positives = 427/825 (51%), Gaps = 48/825 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LP++A+ ++AL P +LL A GAGKST PL LA ++IL++PR LA Sbjct: 9 LPDLPLSALRDGFMSALQQTP-LLLEAEPGAGKSTLAPLWALAQVAEGRQVILVQPRILA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A+ +A RLA+LL E G+ VGY++ + V T+L V T GVL + + +PEL VG V Sbjct: 68 AQALAVRLAQLLGEACGERVGYQVPYDSRVSSRTQLLVATPGVLLQRLLANPELGDVGCV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HERS+ DL ALL +VQ LRDD++L++MSAT D QQ+ + + GR Sbjct: 128 MLDEIHERSVNQDLLWALLQEVQ-ILRDDVQLVVMSATPDPALQQQIHHR---LFAPGRC 183 Query: 181 FPVERRYLPLPA--------HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 FPV Y P A ++ + A A ++ +L+FLPG EI L Sbjct: 184 FPVSVHYQPPKALGSGQFSQEEKLPAQLLRALANHGDWQTRCVLVFLPGWREIDDCAMAL 243 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 S V L L+ ++ +QR A+ PA +V+LATNIAETSLTI + LV+D Sbjct: 244 HDAYPS-VQLFRLHSQVAAQEQRNALDPA--QGPRVILATNIAETSLTIADVTLVIDSGL 300 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R ++ RTGL+RL T R+S AS QR GRAGR++ G + L +++Q AA PEI Sbjct: 301 ARRVDYEQRTGLSRLRTARISMASAEQRRGRAGRVQAGQCIRLWSQDQ--PLAAADLPEI 358 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 +D L + + WG + WL+ P + L A++ LQ++G L+ + ++ G+ + Sbjct: 359 RATDYLPLALRIAHWGSP-AQSLPWLEPPNRLALQFAQQQLQLMGLLDVQGMITDAGRCV 417 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN----SDLGVAFSRNQPAWQQ 467 + LG PR+AA+L++ + A+ + P + D WQ Sbjct: 418 SELGTHPRVAALLLNQQQQVARPLLLLALALHFDWPAEQDLVSWLDSAGRERARNRQWQV 477 Query: 468 RSQQLLKRLNVRGGEADSSLIAPL-LAGAFADRIARRRGQDGRYQLANGMGAMLDANDAL 526 + ++ L L + E + + L LA AF DRI R+ + GRY++ +G+ + Sbjct: 478 QCKRWLNVLALVEVERELVAVDALALARAFNDRIGYRQ-ESGRYRVNSGISVQASCDS-- 534 Query: 527 SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTL-KAW 585 +W + PL+ A + I L L+++ ++ Q Q +E+ + + AW Sbjct: 535 ---DWAVFPLI-SPKAKGHSGIGLPLVLNREQQRQFS----QCDTRLEFKQQRWQMGTAW 586 Query: 586 RRLQIGQLTVKVQPLAKPSED---ELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAK 642 R +G + + Q P+ D L Q + I+ KG L W A A++L R A Sbjct: 587 R---MGGVLIDEQWQPLPASDIPRALLQQVREHIQQKGWDSLRWPANAQRLLQRARLVAS 643 Query: 643 WLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSE 702 PA+D+E L+A L+ WLLP +T L L AL L + Q + + Sbjct: 644 -SGLLVLPALDEEYLIANLDDWLLPFLTAQT---QLDQLPWQAALEFYLGYDNVQNIAAL 699 Query: 703 LPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPL 762 LP +P+G R+ + + + P +A ++QE FG +AQGR+PL + LLSP PL Sbjct: 700 LPEAIELPSGRRVTVEFSSEGQPQVAAKLQEFFGC-EQLQLAQGRIPLKIHLLSPNGSPL 758 Query: 763 QITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 +T +L FW+ AY +V+KEM+GRYP+H WP++P T TKK Sbjct: 759 AVTANLQTFWQQAYPDVRKEMRGRYPRHPWPENPLEHQATALTKK 803 >UniRef50_B9XI99 Helicase-associated domain protein n=1 Tax=bacterium Ellin514 RepID=B9XI99_9BACT Length = 856 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 238/859 (27%), Positives = 392/859 (45%), Gaps = 74/859 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 SSLP+ + ++ L +++L APTG+GK+T +P +L + KII+L+PRR+A Sbjct: 3 SSLPIWEIHSAIVDQLRTGNRLVLVAPTGSGKTTQVPQMVLDAGLAGDKKIIVLQPRRVA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+A K GD VGY++R + TR+ VTEG+L R +Q + L +G++ Sbjct: 63 ARTVAARVAWERKGKLGDEVGYQIRFDDHTSLGTRICFVTEGILLRWLQENRNLPDIGMI 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----APVVIS 176 + DEFHER+L +D+ALAL+ +Q R DLK+++MSATLD + + L P++IS Sbjct: 123 LFDEFHERNLLSDVALALVKHLQGTQRPDLKMVVMSATLDAEPVADYLSTDKQPCPILIS 182 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVAT-AEMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 EG+SFPVE RYL + D A A A + E G +L+F+PGVGEI S Sbjct: 183 EGQSFPVEVRYLISHDERPITDQAAEAVEAIVNSGEPGDILVFMPGVGEIHSTINASRSV 242 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 R + PL+G L +Q A P P +RKVV++TN+AETS+TI+GIR VVD R Sbjct: 243 RTNERLAFIPLHGELQPEEQDLAFAPNP--LRKVVVSTNVAETSVTIDGIRHVVDSGIAR 300 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 +AR+D G+ L + +S+AS QR GRAGR PG L + ++ PEI + Sbjct: 301 IARYDSERGIGTLGIEEISRASADQRKGRAGRTAPGTCHRLWTESGHLNRPERNTPEIQR 360 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE--GERLSAQGQKMA 412 SDL+ +++ L A WLD+P + A+ LL+MLGAL+ L+ G +M Sbjct: 361 SDLAEVVLLLHSLHIRKAAAFDWLDKPDAQAVERAENLLRMLGALDESTGELTDIGHRMR 420 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP---RMGNSDLGVAFSRNQPAWQQRS 469 L PR + MLV A +A AA++ R+ D ++ +R Q S Sbjct: 421 RLPMHPRYSRMLVEAAKLGSVRSAGLCAALVSGRDLLQRLRREDKHISEARELFEASQES 480 Query: 470 Q------------------QLLKRLNVRGGEA--------------------------DS 485 + +R + A D Sbjct: 481 DFFTLMRAYQFAKKNNFGIETCRRYGINAQSARQVEQTYDQILQIAEQQKLLKPDEQSDD 540 Query: 486 SLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASP 544 + + + F D++ RR L G L + + + + + Sbjct: 541 TALLRCIMAGFIDQLCIRRDSGSLECDLTEGRHGTLMRESVVQNAPLFVTASIREVPSRG 600 Query: 545 D---ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA 601 + LA V + + Q PQ ++ +D + A + ++ L + + Sbjct: 601 SENLTLLGLASAVKREWIEQMFPQHIKVQVEHLFDRTHKRVAAVKLIRFCDLVMAHEHQR 660 Query: 602 KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAAL 661 +++ + R + + E +Q R+ LPE ++P D++++ Sbjct: 661 DLDPTASGRSLADAYRKDYFELPLFNHELKQFIARVNLVCAVLPELEFPPFDEKAITDC- 719 Query: 662 ETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHE 721 L G+ ++ ++ + + L LD P + P ++ ++Y E Sbjct: 720 ---LSRAFAGMSLVKEAQATHLKEEFSRHLAREQLGWLDELAPLTISWPDDRKLKLQYPE 776 Query: 722 DN--------PPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWK 773 + P L V++ E F P I +G++P+ L L +P + ++ T + F Sbjct: 777 EATTKGGDPIAPELQVKLHECFALKEQPLICEGKLPVRLWLCAPDGKRIESTLNWPTFKT 836 Query: 774 GAYREVQKEMKGRYPKHVW 792 +Y +++ ++ +YP+ W Sbjct: 837 TSYPKLKSTLQQKYPRVNW 855 >UniRef50_C4QXR9 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4QXR9_PICPG Length = 967 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 150/526 (28%), Positives = 248/526 (47%), Gaps = 16/526 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP V +L+ + V++ TG+GK+T L L G I +PRR+AA Sbjct: 295 LPAFTVREDLIRTIRENQIVVVIGETGSGKTTQLTQFLYEEGFYKRGIIGCTQPRRVAAM 354 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + K G+ VG+ +R ++ P T ++ +T+GVL R D L +I+ Sbjct: 355 SVAKRVSEEMGVKLGNEVGFTIRFEDRTSPRTMIKYMTDGVLLRETLLDSGLEKYSCIIM 414 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ L L + R DL+L+I SAT++ R + A GR+FP Sbjct: 415 DEAHERSLNTDILLGLFKKILTKRR-DLRLIITSATMNASRFSEFFGNADTFTIPGRTFP 473 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI------ 236 V+ ++ P D A+ ++ G +L+F+ G +I+ + L RI Sbjct: 474 VDIQFSKYPVADYVDAAIKQVLKIHYGKKPGDILVFMTGQEDIEATCQVLQERIEEIEED 533 Query: 237 ---GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + + + P+Y +L + Q K + +RK ++ATNIAETSLT++GI VVD Sbjct: 534 AENKNPLSILPIYSSLPADLQAKVFGRSE--VRKCIVATNIAETSLTVDGIVFVVDAGLC 591 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEI 352 ++ + + G+ L +S A QR+GRAGR PG++ L +AE+ Q PEI Sbjct: 592 KLKVYSSKLGMDILQLAPISFAQANQRSGRAGRTGPGVAYRLYTLTEAEKEMYVQPIPEI 651 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKM 411 +++L+ L+ + G + ++D PP + ++ L L A++ L+ G KM Sbjct: 652 QRTNLANTLLLIKSLGVDNLLDFPFIDPPPHATIYSSLYDLWCLDAIDNLGALTDLGHKM 711 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQ 470 + +P L+ ML+ + + I A+L P + R++ + Sbjct: 712 TSFPMEPVLSKMLIKSHEFKCSTEMCIIVAMLSVPNVFYRPKERQKESDRSRERFFIPES 771 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM 516 L LNV + A F + RR Q+ QL + M Sbjct: 772 DHLTLLNVYNQWLNHRNSARWCVQNFLHEKSLRRAQEIELQLQSIM 817 >UniRef50_Q3JBJ6 ATP-dependent helicase HrpA n=3 Tax=Chromatiaceae RepID=Q3JBJ6_NITOC Length = 1281 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 185/682 (27%), Positives = 304/682 (44%), Gaps = 70/682 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLPV E+ A+ V+L TG+GK+T LP L G+ G I +PRR+AA Sbjct: 53 SLPVIERREEIGAAIRNHQVVILCGETGSGKTTQLPKICLELGRGVAGMIGHTQPRRIAA 112 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ LN G VGY++R + V P+T ++++T+G+L Q D L +I Sbjct: 113 RTVANRIAKELNSDLGQIVGYKVRFHDQVSPSTYIKLMTDGILLAETQGDRFLDQYDTLI 172 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R Q +AP++ GR++ Sbjct: 173 IDEAHERSLNIDFLLGYLKQLLPK-RPDLKVIITSATIDTERFSQHFGQAPIIEVSGRTY 231 Query: 182 PVERRYLP-----LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE RY P + + + A E+ R G +L+FLPG EI+ E L Sbjct: 232 PVEIRYRPLCGEQETQERNLSEGILDAVDELSRLGPGDILVFLPGEREIRETAEALRKHH 291 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS +Q + P R++VLATN+AETSLT+ GI VVD R++ Sbjct: 292 PPHTEILPLYARLSSTEQNRVFK--PHSGRRIVLATNVAETSLTVPGIHYVVDPGLARLS 349 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ R+ + RL +++SQ+S QRAGR GR+ G+ + L ++E ++PE+L+++ Sbjct: 350 RYSVRSKVQRLPIEKISQSSANQRAGRCGRVATGVCIRLYSEEDFLGRPEFTDPEVLRTN 409 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 L+ +++++ +LD P + RLL LGA++ + L+ GQ++A L Sbjct: 410 LASVILQMKSLQLGAVEDFPFLDPPLPKMINDGLRLLAELGAVDKAQNLTPLGQRLARLP 469 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLK 474 DPR+ M+++ + IA+ L + PR + A +Q L Sbjct: 470 IDPRIGRMVLAGDEFHCLSEMLIIASALSIQDPRERPLEAQQAADEAHSRFQDERSDFLS 529 Query: 475 --------------------------------RLNVRGGEADSSLIAPLLAGAFADRIAR 502 RL + G +++A Sbjct: 530 YLKLWEDLHRQRARLSQNKLRAYCREHFLSYLRLREWRDIHQQLKLLATNIGFRPNQVAA 589 Query: 503 R------------------RGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSA 542 + + Y A + + AL +W++A L++ S Sbjct: 590 EYGAIHRALLTGLLGNIAVKSEKDHYLGARNIKLQIFPGSALFKKSPKWIMAAELVETSR 649 Query: 543 SPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQL-TVKVQPL 600 A ++ + L LV++S W+ + A+ R+ + L + + + Sbjct: 650 ---LYARCAGKIEPEWLEALALHLVKRSYFDPHWEKRPAQVIAYERITLYGLTVIPKRRI 706 Query: 601 A--KPSEDELHQAMLNGIRDKG 620 + +E + + G Sbjct: 707 HYGPVNPEEAREIFIREALVNG 728 >UniRef50_Q5ANN5 Likely spliceosomal DEAD box ATPase n=3 Tax=Eukaryota RepID=Q5ANN5_CANAL Length = 865 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 162/525 (30%), Positives = 253/525 (48%), Gaps = 15/525 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 SLPV + E L ++ +++ TG+GK+T LP L I +PRR+A Sbjct: 228 SLPVYSYREEFLKIINENQTLIVVGETGSGKTTQLPQYLHEAGYSRNNQVIACTQPRRVA 287 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQN-CVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A +VA R+A + K G+ VGY +R + C T ++ VT+G+L R +DP L Sbjct: 288 ATSVANRVANEMQVKLGEQVGYNIRFDDNCKDGVTVIKYVTDGMLLREFLQDPTLGKYSA 347 Query: 120 VILDEFHERSLQADLALALLLDVQQGLR-DDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 +++DE HER+L ++ L+LL DV R DDLK++I SAT++ ++ Q AP++ G Sbjct: 348 IMIDEAHERTLSTEILLSLLKDVMMTTRKDDLKIIIASATINAEKFSQFFNNAPILNIPG 407 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIG 237 R FPV+ Y P A+ + Q G +L+FL G EI+ ++E L I Sbjct: 408 RRFPVKIHYTKQPEANYIQAAITTIFQIHMTQPLPGDILVFLTGQDEIETMEEILRDSIL 467 Query: 238 S------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 +++C +Y L Q+K P P RK+VLATNIAETS+TI+GI V+D Sbjct: 468 KLGDQIDPMIVCSIYANLPQELQQKIFQPTPSNTRKIVLATNIAETSITIDGISYVIDPG 527 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEP 350 + ++P TG+ L+ S+AS QRAGRAGR+ PG L K + +P Sbjct: 528 YVKQNVYNPTTGMESLVVVPCSRASADQRAGRAGRVGPGKCFRLFTKWSFYNELDSNQQP 587 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQ 409 EI + +L+ +++ LL G +D ++D P ++ A LL LGAL + +L+ G+ Sbjct: 588 EIQRVNLTSVILLLLSLGINDLLGFEFMDPPSKEAIIKALNLLYALGALNTQGKLTKTGK 647 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQQ 467 KM+ DP ++++ D I A+L E + D + + + Sbjct: 648 KMSEFPLDPVFTKCILTSDKFDNTKQIISIIAMLNESSNLFYRPKDKKELADKRKQEFND 707 Query: 468 RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L + DS F +R ++ QL Sbjct: 708 LQGDQFMLLKIWQQWVDSGYSVQWCQDYFIQYKTMKRIKNIYEQL 752 >UniRef50_B9WE17 Pre-mRNA-splicing factor ATP-dependent RNA helicase, putative n=2 Tax=Candida RepID=B9WE17_CANDC Length = 866 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 157/526 (29%), Positives = 255/526 (48%), Gaps = 16/526 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 SLPV + E L ++ +++ TG+GK+T LP L I +PRR+A Sbjct: 229 SLPVYSYREEFLKIINENQTLIVVGETGSGKTTQLPQYLYEAGYSQNNRIIACTQPRRVA 288 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGL 119 A +VA+R+A+ + K G+ VGY +R + T ++ VT+G+L R +DP L + Sbjct: 289 ATSVAKRVADEMQVKLGEQVGYNIRFDDNCKDGITMIKYVTDGMLLREFLQDPTLEKYSV 348 Query: 120 VILDEFHERSLQADLALALLLDVQQG--LRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 +++DE HER+L ++ L+LL D+ ++DLK++I SAT++ ++ + AP++ Sbjct: 349 IMIDEAHERTLSTEILLSLLKDIIMTTTRKNDLKIIIASATINAEKFSKFFNNAPILNIP 408 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRI 236 GR FPV+ Y P A+ + Q G +L+FL G EI+ ++E L I Sbjct: 409 GRRFPVKIHYTKQPEANYIQAAITTIFQIHMTQPLPGDILVFLTGQDEIETMEEILHDSI 468 Query: 237 G------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + +++C +Y L Q+K P RK+VLATNIAETS+TI+GI V+D Sbjct: 469 VKLGDQINPMMVCSIYANLPQELQQKIFQQTPTNTRKIVLATNIAETSITIDGISYVIDP 528 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSE 349 + ++P TG+ L+ S+AS QRAGRAGR+ PG L K + Sbjct: 529 GYVKQNVYNPITGMESLVVVPCSRASADQRAGRAGRVGPGKCFRLFTKWSFYNELDLNQQ 588 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PEI + +L+ +++ LL G +D ++D P ++ A LL LGAL + +L+ G Sbjct: 589 PEIQRVNLTSVILLLLSLGINDLLGFEFMDPPSKQAIIKALNLLYALGALNSQGKLTKIG 648 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM--GNSDLGVAFSRNQPAWQ 466 +KM+ DP ++++ D I A+L E + D + + + Sbjct: 649 KKMSEFPLDPIFTKCILTSDKFDNTKQIISIIAMLNESSNLFYRPKDKKELADKRKQEFN 708 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 LN+ DS F +R ++ QL Sbjct: 709 DSQGDQFMLLNIWQQWVDSGYSVQWCQDYFIQYKTMKRIKNIYEQL 754 >UniRef50_P53131 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 n=167 Tax=Eukaryota RepID=PRP43_YEAST Length = 767 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 172/533 (32%), Positives = 263/533 (49%), Gaps = 24/533 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG---INGKIILLEPRRL 59 LPV A E L ++ TG+GK+T +P +L N ++ +PRR+ Sbjct: 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV 151 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VAQR+AE ++ K G+ VGY +R +N T L+ +T+G+L R D +LS Sbjct: 152 AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSC 211 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +ILDE HER+L D+ + LL V + R DLK++IMSATLD ++ Q+ +AP++ GR Sbjct: 212 IILDEAHERTLATDILMGLLKQVVK-RRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGR 270 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL------- 232 ++PVE Y P D A+ +E+G +LLFL G EI+ ++ Sbjct: 271 TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL 330 Query: 233 -ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGM-----RKVVLATNIAETSLTIEGIRL 286 + + PLYG+L + Q++ PAP+ RKVV++TNIAETSLTI+GI Sbjct: 331 VREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVY 390 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AA 345 VVD + ++PR + L+ +S+AS QRAGRAGR PG L +E ++ Sbjct: 391 VVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELI 450 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RL 404 QS PEIL+S+LS ++EL + G D ++D P ++ A L L L+ E L Sbjct: 451 EQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNL 510 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQP 463 + G+ + DP LA ML+ + + I A+L P + + + Sbjct: 511 TPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKN 570 Query: 464 AWQQRSQQLLKRLNV----RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + + LNV + EA I + + + + R QL Sbjct: 571 IFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQL 623 >UniRef50_B7A9M0 ATP-dependent helicase HrpB n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A9M0_THEAQ Length = 753 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 286/778 (36%), Positives = 403/778 (51%), Gaps = 57/778 (7%) Query: 29 TGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQN 88 GAGKST PL+LL + G+I+L EPRR+AAR VA RLAE L E G TVGYR+R + Sbjct: 23 PGAGKSTLFPLRLLKA--LPGRILLFEPRRVAARAVAARLAENLGEPLGKTVGYRVRLEG 80 Query: 89 CVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD 148 TRL V+TEG+L R++ DP L GV V+LDE HER L+ DLALALLL VQ+ +R Sbjct: 81 RESRETRLLVMTEGLLLRLLLEDPTLEGVSAVLLDEAHERHLEGDLALALLLKVQETIRP 140 Query: 149 DLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEML 208 DLKL +++AT D D + + E V+ EG PVE +L P + A Sbjct: 141 DLKLALLTATPDEDLNRALKGE--VLALEGEGHPVEVFHLDRPPQGPLEALAARYARRAF 198 Query: 209 RQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKV 268 + G +L+FLPG EI+R + L D+ PL+G L L +Q + P P RK+ Sbjct: 199 LEGEGDVLVFLPGKAEIERTRSLLQ-----DLPAFPLHGGLPLKEQAALLRPGP---RKI 250 Query: 269 VLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLE 328 VLAT++AETSLT+ +R VVD + RFDPRTGLTRL R+ + S QRAGRAGR Sbjct: 251 VLATDVAETSLTLPNVRAVVDTGLAKKPRFDPRTGLTRLALVRIPEESARQRAGRAGRTG 310 Query: 329 PGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLA 388 PG L + PEIL++DLS L+ L +G ++ +PP L A Sbjct: 311 PGRVFRLYPEGPF----PPKRPEILEADLSRALLLALAFGER-LEELPLPTKPPQGALEA 365 Query: 389 AKRLLQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR 448 A LL++LGA+EGE L+ G++M L PRLA + + A+ + AA + A+LEE Sbjct: 366 AWNLLRLLGAVEGEALTPLGKRMLTLPTHPRLARLALEAEKEGLLPLAADLMALLEE-GL 424 Query: 449 MGNSDLGVAFSRNQPAWQQ-RSQQLLKRLNVRGGE---------ADSSLIAPLLAGAFAD 498 G DL V A + R + + + G + LL A+ D Sbjct: 425 EGEKDLMVHLEALLEARRAGRPTRAERASALWRGRLGAPPLKALPHPEEVGRLLMAAYPD 484 Query: 499 RIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDE 558 R A R GRY+L G L+ +L+A G + R+LL + ++ Sbjct: 485 RAAERLAP-GRYRLVTGPALRLEG-----GPPYLVAVGAELGE--REGRVLLYAPLSRED 536 Query: 559 LVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRD 618 L++R + W +G L+ + ++G L ++ P+ +++ Sbjct: 537 LLKRAEVAL----WTGW--EEGRLRGYLERRLGALVLERLPVDPGPPTA------QHLKE 584 Query: 619 KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 L E E++ LRL E + P+++D +WLLP GV L L Sbjct: 585 A-LKGFALPEEGEEVLLRLRFLKAHGVEVEAPSLED-------PSWLLPWAQGVRRLEDL 636 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 K+L + L L + ++ P +P G R +RY E PP L++R+QE FG Sbjct: 637 KALPWKEMLLSHLG-EKRALVERLAPESLPLPNGRRKRLRYREGAPPVLSLRVQEAFGLK 695 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 P + +GRVP+V+ELLSPA RP+Q+T+DL FW+ Y EV+KE+ RYPKH WP+ P Sbjct: 696 ETPRVLEGRVPVVVELLSPAGRPVQVTQDLQSFWEKRYPEVRKELMRRYPKHPWPEKP 753 >UniRef50_C5SLZ8 ATP-dependent helicase HrpB (Fragment) n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SLZ8_9CAUL Length = 676 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 238/681 (34%), Positives = 366/681 (53%), Gaps = 30/681 (4%) Query: 151 KLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDD----AVAVATAE 206 +LL+MSATLD +R++ +LP+A V S GR+FPV Y R ++ VA A+ Sbjct: 1 RLLVMSATLDGERVRGVLPDAEVFHSLGRAFPVTTHYTGRDQTLRLEEDVAKVVARVAAK 60 Query: 207 MLRQESGSLLLFLPGVGEIQRVQEQLASR-IGSDVLLCPLYGALSLNDQRKAILPAPQGM 265 + + + ++L+FLPG GEI RV LA + + + + LYGA+ DQ + + Sbjct: 61 LTPERAETMLVFLPGQGEIHRVATLLAEKSLSPAIEVHKLYGAMEAKDQTRVLAKNAPAT 120 Query: 266 RKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAG 325 ++VLAT IAETSLT++ + +VVD R+ RFD G+ R++T+RVS+A+ QR GRAG Sbjct: 121 PRIVLATAIAETSLTLDKVSMVVDSGVARLGRFDAARGVVRMVTERVSKAAADQRRGRAG 180 Query: 326 RLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVN 385 R + G L +E + PEIL +DLS L+++L WG ++ LD PP Sbjct: 181 RTQAGDCYRLWDEENDRSLIPFARPEILDTDLSRLVLDLRVWGAKSTEGLALLDHPPKAA 240 Query: 386 LLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE 444 L A+++L+ L L+ + ++ G+ + L PRL ML+ A D + A +A +L Sbjct: 241 LQEAEKVLRGLDILDAKGEVTPHGRLVGRLPMSPRLGHMLLLAARDGLSDQGAALAVLLS 300 Query: 445 EPPRMGN---------------SDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSL-- 487 E G S + W + + QL++ L A +S+ Sbjct: 301 ENGLAGKATDLDLRLEGLSKERSPKVTQARQLAQTWARLAGQLVRDLPKDAKSAQTSVKS 360 Query: 488 IAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDAR 547 + LLA F +R+A+ RG+ G + +ANG G +D +D L+R ++ L G + R Sbjct: 361 VHALLAECFPERVAKARGKAGEFVMANGRGVYVDEHDPLARAAYVAVGDL--GGGAGRDR 418 Query: 548 ILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDE 607 +LL + E++ +++ +E G +A +++ G+L + QPL + Sbjct: 419 VLLGAALSEAEVLTLFADRLEKRTVLE--RFNGRYRALAQVRFGELILSSQPLPSVPPEL 476 Query: 608 LHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLP 667 L +A IR KGL VL ++ AE LR R+ + WP + DE+LL+ L WL P Sbjct: 477 LIEAEAEEIRTKGLKVLKFSENAESLRARVNFLHA--QDSTWPDMSDEALLSGLADWLGP 534 Query: 668 HMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPAL 727 + G L L + D+ QAL G LD+ Q+ LD+ P H+ +PTGS I I Y + P L Sbjct: 535 YAAG-RPLLSLSASDVSQALLGRLDYEQQRALDALAPEHWRMPTGSNIRIDYGAEGGPRL 593 Query: 728 AVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRY 787 VR+QE++G +P + R PL L LLSPA RP+QIT++L FW G++ EV+ +MKGRY Sbjct: 594 EVRVQELYGVTQHPVVGPQRTPLTLALLSPAHRPIQITKNLPAFWDGSWAEVRSDMKGRY 653 Query: 788 PKHVWPDDPANTAPTRRTKKY 808 P+HVWP++P + PT R K Sbjct: 654 PRHVWPENPRDADPTTRAKPR 674 >UniRef50_B6JZW3 ATP-dependent RNA helicase Prp16 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JZW3_SCHJY Length = 1176 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 155/518 (29%), Positives = 250/518 (48%), Gaps = 10/518 (1%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAAR 62 LP AV +LL+ + ++ TG+GK+T L L G G I +PRR+AA Sbjct: 494 LPAFAVREQLLSIIRDNQVTVVVGETGSGKTTQLAQFLYEDGQGKLGMIGCTQPRRVAAM 553 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + + G VGY +R ++ P T ++ +T+GVL R +L ++I+ Sbjct: 554 SVAKRVSEEMGVQLGTLVGYSIRFEDVTSPQTIIKYMTDGVLLRESLVQNDLDRYSVIIM 613 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ + LL + R DLKL++ SAT++ R + AP GR++P Sbjct: 614 DEAHERSLNTDILMGLLRTIL-SRRRDLKLIVTSATMNAQRFSEFFGGAPQFTIPGRTYP 672 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS---- 238 V+ + P + AV + Q +G +L+F+ G +I+ + + R+ Sbjct: 673 VDVLFSKAPCSDYVEAAVRQVLQIHVSQPAGDILVFMTGQEDIEVTCDVIKERLAQLTDA 732 Query: 239 -DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y + + Q K A G+RKVV+ATNIAETSLT++GI VVD ++ Sbjct: 733 APLSVLPIYSQMPADLQTKIFDAAEPGVRKVVVATNIAETSLTVDGISYVVDTGFCKLKM 792 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE-PEILQSD 356 ++ + G+ L +SQA+ QR+GRAGR PG++ L + R Q+ PEI +++ Sbjct: 793 YNAKMGIDTLQITPISQANANQRSGRAGRTGPGVAYRLYTESAFVREMFQTTLPEIQRTN 852 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALG 415 LS ++ L G + ++D+PP L + L LGAL+ L+A G KMA Sbjct: 853 LSNTVLLLKSLGVKNIMDFDFMDRPPAATLTTSSYELWTLGALDNFGNLTALGSKMANFP 912 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 DP LA +L+ A + I ++L P + + + L Sbjct: 913 MDPSLAKLLIIAAEYGCSNEVLTIVSMLSVPSVFYRPKERLEESDAAREKFHVPESDHLT 972 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 LN+ + F + R + R QL Sbjct: 973 LLNIYLQWERNHCSVAWCTKHFLHSRSLSRARSIRDQL 1010 >UniRef50_C5X1W0 Putative uncharacterized protein Sb01g037170 n=2 Tax=Poaceae RepID=C5X1W0_SORBI Length = 692 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 160/528 (30%), Positives = 256/528 (48%), Gaps = 47/528 (8%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 +LPV E L +L ++L TG+GK+T +P +L G++ + + +PRR+A Sbjct: 64 TLPVWQQKEEFLRSLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRRVA 123 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V++R+AE ++ G+ VGY +R ++C T L+ +T+G+L R DP L ++ Sbjct: 124 AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYKVI 183 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER+L D+ LL +V + R DLKL++MSATL+ ++ Q AP++ GR Sbjct: 184 VLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRL 242 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 PVE Y P + A+ + + +G +L+FL G EI+ ++ I + Sbjct: 243 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINNMG 302 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAP-------QGMRKVVLATNIAETSLTIEGIRLV 287 V + PLY L Q+K PAP RK+V++TNIAETSLTI+GI V Sbjct: 303 DQVGTVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVYV 362 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAA 346 +D + ++PR + L+ +S+AS QRAGRAGR +PG L ++ E Sbjct: 363 IDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDLQP 422 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLS 405 Q+ PEIL+S+L+ ++ L + G D ++D P L+ A +L LGAL+ E L+ Sbjct: 423 QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT 482 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW 465 G+ M+ DP+++ M + A + + Sbjct: 483 QLGEMMSEFPLDPQMSKM-----------------------------EAQKAADEAKARF 513 Query: 466 QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 L LNV ++ F + A + + R QL Sbjct: 514 GHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINSRALKSADNVRQQLV 561 >UniRef50_Q759P9 ADR224Wp n=2 Tax=Saccharomycetaceae RepID=Q759P9_ASHGO Length = 1090 Score = 582 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 165/548 (30%), Positives = 257/548 (46%), Gaps = 25/548 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 +LPV V +LL + ++ TG+GK+T L L +I + +PRR+A Sbjct: 377 TLPVYEVKSQLLQVIRDNQVTVIIGETGSGKTTQLAQYLHEDGFCRLGKQIGVTQPRRVA 436 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A + + G VGY +R ++ +TRL+ +T+G+L R D L + Sbjct: 437 AMSVAERVALEMGVELGKEVGYAIRFEDKTSADTRLKFMTDGILLRETLIDDLLEKYACI 496 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D+ L ++ R +LKL+I SAT++ + Q +AP GR+ Sbjct: 497 IMDEAHERSLNTDVLLGFFKNLL-TRRRNLKLIITSATMNASKFSQFFGDAPQFTIPGRT 555 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASR---- 235 FPV+ Y P + AV A + L G +L+F+ G +I+ + L R Sbjct: 556 FPVQINYTSYPVPDYVEAAVQQAASIHLSTSLLGDILIFMTGQEDIEATCDALKERIVDM 615 Query: 236 -----------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 I +DV + P+Y AL + Q + + RK+V+ATNIAETSLTI+GI Sbjct: 616 RVKRKGSIMQDILADVEILPIYSALPADIQGRIFNKSDAKKRKIVVATNIAETSLTIDGI 675 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ER 343 + V+DC ++ ++PR GL L +S A+ QR+GRAGR PGI+ L + A Sbjct: 676 KYVIDCGYSKLKVYNPRIGLYNLAITPISLANAQQRSGRAGRTGPGIAYRLYTENTAIAD 735 Query: 344 AAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GE 402 QS PEI ++ L+ +L+ L G D ++D PP L+ + L LGAL+ Sbjct: 736 MHPQSIPEIQRTSLASVLLLLKSLGIEDIFNFPFMDSPPSATLMTSMFELWTLGALDNFG 795 Query: 403 RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRN 461 L+ G KMA P L+ +L+ + + I ++L P + + Sbjct: 796 ALTEMGSKMAKFPLQPSLSKILLLSAKYGCSEEMVTIVSMLSVPQIFYRPKERQKESDQA 855 Query: 462 QPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD 521 + + L LNV + + RR D R QL + AML Sbjct: 856 RNRFVVPESDHLTLLNVFVQWKVHRYSLDWCRKNYLQYRSLRRAYDIREQL---IRAMLK 912 Query: 522 ANDALSRH 529 + + Sbjct: 913 EDVPIISS 920 >UniRef50_Q47MH0 ATP-dependent helicase HrpA n=13 Tax=Bacteria RepID=Q47MH0_THEFY Length = 1324 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 203/680 (29%), Positives = 316/680 (46%), Gaps = 95/680 (13%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV+ E+L A+ V+++ TG+GK+T LP L G+ G+I +PRRLA Sbjct: 76 AELPVSQKKDEILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVLGQIGHTQPRRLA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+AE L G+ VGY++R + +T ++++T+G+L IQ+D L + Sbjct: 136 ARTVAARIAEELGTTLGEWVGYKVRFTDVSSDDTLVKLMTDGILLAEIQQDRMLRAYDTL 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D +R + AP+V GR+ Sbjct: 196 IIDEAHERSLNIDFILGYLKRLLP-RRPDLKVIITSATIDPERFSRHFDNAPIVEVSGRT 254 Query: 181 FPVERRYLPLPAHQRFDDAVAVA--------------TAEMLRQESGSLLLFLPGVGEIQ 226 +PVE RY PL A Q DD VA E+ + G +L+FL G EI+ Sbjct: 255 YPVEVRYRPLTAEQVVDDEDTVAATDDRDQIQGICDAVDELCAEGPGDILVFLSGEREIR 314 Query: 227 RVQEQLASRIGSD--------VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 E L + V + PLY LS +Q++ P+G R++VLATN+AETS Sbjct: 315 DTAEALGKHLARRYPEGSPQAVEILPLYARLSAAEQQRVFQ--PRGKRRIVLATNVAETS 372 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ GIR VVD R++R+ RT + RL +R+SQAS QR GR GR+ GI + L ++ Sbjct: 373 LTVPGIRYVVDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRVAEGICIRLYSE 432 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 E +EPEIL+++L+ +++++ G D + ++D P + LL LGA Sbjct: 433 EDFLSRPEFTEPEILRTNLASVILQMAALGLGDVEEFPFVDGPDRRQVKDGVALLTELGA 492 Query: 399 LEG-----ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNS 452 L+ RL+A G+ +A L DPRL M+V A + IAA L + PR Sbjct: 493 LQPAKDGRHRLTALGRTLAQLPIDPRLGRMVVEADRNGCLHEVMVIAAALSIQDPRERPV 552 Query: 453 DLGVAFSRNQPAWQQRSQQLLKRLNVRG-------------------------------- 480 + A ++ + L LN+ Sbjct: 553 EQQQAAAQKHARFAVPDSDFLAYLNLWNYLNERQQELSGNQFRKMCREEFLNYLRVREWQ 612 Query: 481 -------------------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD 521 AD+ I L I + + Y A G + Sbjct: 613 DIYAQLRQIVQSLGMKVNTAPADAKRIHLSLLAGLLSHIGLKDPEKHEYLGARGARFAIF 672 Query: 522 ANDAL--SRHEWLIAPLLLQGS---ASPDARILLALLVDIDELVQRCPQLVQQS-DTVEW 575 AL + W+++ L++ S A +ARI + + + + LV+++ W Sbjct: 673 PGSALFKKQPRWVMSAELVETSRLWARVNARI------EPEWVEELAGHLVKRTYSEPHW 726 Query: 576 DDAQGTLKAWRRLQIGQLTV 595 + +G + A+ R+ + + + Sbjct: 727 EKKRGAVMAYERVTLYGVPI 746 >UniRef50_B6AHK6 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AHK6_9CRYT Length = 1052 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 163/536 (30%), Positives = 256/536 (47%), Gaps = 29/536 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 +LPV A+ ELL + P V++ TG+GK+T L L N G I +PRR+AA Sbjct: 307 TLPVFAMKEELLNLIYEHPIVVVVGETGSGKTTQLTQYLYEAGYSNYGIIACTQPRRVAA 366 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E +N K G VGY +R ++ T ++ +T+GVL R DPEL +VI Sbjct: 367 VSVAKRVSEEMNVKLGTKVGYTIRFEDLTSKETVIKYMTDGVLMRESLTDPELERYSVVI 426 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ + + + R D +L++ SAT+D+D+ AP+ GR+F Sbjct: 427 MDEAHERSLSTDVLFGIFKSILRRRR-DFRLIVTSATMDSDKFSNFFGRAPIFEIPGRTF 485 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQES---------------GSLLLFLPGVGEIQ 226 PV +YL + + V G +L+F+ G +I+ Sbjct: 486 PVTIQYLRTQSEDYIESVVRQCLQIHCSDMRCNLQKSGNSEEISNGGDILIFMTGQEDIE 545 Query: 227 RVQEQLASRIG-------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSL 279 +A ++ S +L+ P+Y L + Q K P RKV++ATNIAETSL Sbjct: 546 ATCWLIAEKMSFLVEDGVSPLLVLPIYSQLPSDLQIKIFQ--PSIYRKVIVATNIAETSL 603 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 T++GIR V+DC +V ++P+ G+ L +SQA+ QR+GRAGR PGI + ++ Sbjct: 604 TLQGIRFVIDCGFCKVKVYNPKIGMDSLQVVPISQANAQQRSGRAGRTAPGICYRMYTEK 663 Query: 340 QAE-RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 + PEI +++L+ +++ L G +D ++D P ++L + L LGA Sbjct: 664 AFLGEMLTSNIPEIQRTNLANVVLLLKTLGFNDILSFPFMDAPSESSILTSLYQLWSLGA 723 Query: 399 LEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGV 456 L+ + L+ G MA DP LA L++A + + I AIL P Sbjct: 724 LDDDGNLTNIGNLMAKFPLDPPLAKTLITASELNCISEIIVIVAILSVPTIFFRPRGREE 783 Query: 457 AFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + + L LNV + F A ++ QD YQ+ Sbjct: 784 ESDATREKFVVPESDHLTLLNVYLQWKRHNYNPKWCEKHFLHHKALKKAQDVFYQI 839 >UniRef50_A4BBY9 ATP-dependent helicase HrpB n=1 Tax=Reinekea blandensis MED297 RepID=A4BBY9_9GAMM Length = 784 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 257/815 (31%), Positives = 392/815 (48%), Gaps = 53/815 (6%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 LP+AA+ +L A + ++SAP G+GK+T LPL L I LL P+RLA R Sbjct: 7 DLPIAAIRNPVLNAWNEHGGAIISAPPGSGKTTQLPLWFLDSG--EAPIFLLIPKRLAVR 64 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A++L++ L E G VGY++R +TRL V T G R++ DP+ VI Sbjct: 65 MAARQLSDQLAEPVGQRVGYQLRDDAKTSASTRLVVTTYGTFLRILLNDPDRISGSTVIF 124 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERS+ DL+ AL+ L D ++ LIMSATL+ L PV+ S+GRS+P Sbjct: 125 DEFHERSVDQDLSFALIHQYINELDDSVRRLIMSATLNIRELAT-QTGLPVIESDGRSYP 183 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V+ Y P Q D +A + +L+FLPG+ EI+ ++ L D+ + Sbjct: 184 VKLTYQPTNIKQPAD--IARVIRNEYQHVEHHILVFLPGIREIRAIERHL------DMPV 235 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 L+G L+ +A+ AP V+LATN+AE+S+T+ + V+D ER A+ P T Sbjct: 236 LILHGTLNATPDVQALSQAP---ATVILATNVAESSITLPSVHTVIDTGLERYAQVHPVT 292 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GLT L T+R+SQAS TQR+GRAGRL PG + L +++ + P + +SDL+ ++ Sbjct: 293 GLTELKTRRISQASATQRSGRAGRLGPGKGIRLWSEDDQQSLVPHLPPPVRESDLTESVL 352 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLA 421 + WG + PA++ W + PP L A L GAL + ++ G+ M LG P LA Sbjct: 353 LIAGWG-NRPAEIPWPETPPKQRLALAVEKLTTWGALSADGHITPHGRAMLRLGLPPWLA 411 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPA--------WQQRSQQLL 473 +L A+ ++ AA L A+ QP ++ + +L+ Sbjct: 412 HLLALAQTENRLTAAAL-------LAAHIGKGLMPAYDFTQPQTLSDFSDDIRKETIRLI 464 Query: 474 KRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLI 533 R + + LL A +DR+ R G++ Q+ +G + EW Sbjct: 465 SRFQLEPNSTIEPISESLLVRALSDRVIRFHGKN-DGQMISGTRVQTQVPSS---SEW-- 518 Query: 534 APLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQL 593 A L+ + V +++ P V + Q A+ R + Sbjct: 519 ALLIDGIRREQHILGFAWVAVSGKAVLETLP----IETDVLFQPTQKA--AFLRRRRLGR 572 Query: 594 TVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVD 653 + +P +E QA + I G L+W+AE + R A L DWP Sbjct: 573 LNLDETPYQPEPEEKIQAWSHHIDAFGEEALSWSAEDRAFKRRCQVAEALLD--DWPKWP 630 Query: 654 DESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGS 713 D S L +P + G+ L L + L L + Q L+ LP H+T P+G Sbjct: 631 DGSEWTDLA---MPFLNGLKRLDDL---VLSPVLEHWLGYERLQWLNRTLPRHWTAPSGR 684 Query: 714 RIAIRYHEDNPPALA-VRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFW 772 + + Y + A A +++QE+FG A +PTIA G P+ L+L +P R + DLS FW Sbjct: 685 TVTLEYLPEKATARATLKLQELFGLAESPTIASG-TPIELDLCAPNGRSVASVIDLSHFW 743 Query: 773 KGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 Y EV+KE++GRY KH WP+DP + T++T + Sbjct: 744 ANIYPEVRKELRGRYNKHPWPEDPLSFQATQKTNR 778 >UniRef50_Q1N0P2 ATP-dependent helicase HrpA n=1 Tax=Bermanella marisrubri RepID=Q1N0P2_9GAMM Length = 1298 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 176/688 (25%), Positives = 312/688 (45%), Gaps = 76/688 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP+ E+ + V+++ TG+GK+T LP + GKI +PRRLAAR Sbjct: 73 LPINQKKQEIAETIANNQVVVIAGETGSGKTTQLPKICMELGLAKYGKIAHTQPRRLAAR 132 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+A+ N G+ VGY++R + ++ L+++T+G+L Q D L+ ++I+ Sbjct: 133 SVADRIAQECNVPLGEQVGYQVRFTDQSKDSSLLKLMTDGILLAETQNDRFLNQYQVIII 192 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L + R DLK++I SAT+D R + APV+ GR++P Sbjct: 193 DEAHERSLNIDFLLGYLKQLLPK-RPDLKVVITSATIDLQRFSEHFDNAPVIEVSGRTYP 251 Query: 183 VERRYLPLPAHQRFDDAV-------AVATAEMLRQES-----GSLLLFLPGVGEIQRVQE 230 VE RY P+ D+ A E+ R+++ G +L+FL G EI+ Sbjct: 252 VEVRYRPIVDVDTDDEQEGDMYQGIIDAVDELEREDAKRGQIGDVLVFLSGEREIREASL 311 Query: 231 QLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 L + PLY L+ ++Q++ P G R++VL+TN+AETSLT+ GIR VVD Sbjct: 312 ALKKANLKQTEILPLYARLNSSEQQRIFKPT-GGKRRIVLSTNVAETSLTVPGIRYVVDT 370 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 RV+R+ R+ + RL + +SQAS QR GR GR+ GI + L ++E S+P Sbjct: 371 GVARVSRYSYRSKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFLSRPEFSDP 430 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQ 409 EI +++L+ +++++L D ++D P + LL+ L A++ + ++ G+ Sbjct: 431 EIQRTNLAAVILQMLSLRLGDVNAFPFVDAPDNRFIKDGYNLLKELSAVDKKNNITRIGR 490 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQR 468 +++ DPR+A +L+ A A A IA+ L + PR + + ++ Sbjct: 491 QLSRFPVDPRIARVLIEANAKHALAEALIIASALSIQDPRERPVEKQQQADQKHAEFRDD 550 Query: 469 SQQLLKRLNVRG------GEADSSLIAPLLAGAFADRIARRRGQDGRYQL---------- 512 + +N+ ++ + + F + + R +D YQL Sbjct: 551 ESDFITLINIWNWYEEQRQALSNNQLRQICKKHFLNYMRMREWRDVHYQLRILCKELKFV 610 Query: 513 ----------------------------------ANGMGAMLDANDAL--SRHEWLIAPL 536 A +L + R +W+++ Sbjct: 611 ENKEVSSYDQLHKCILSGYLSHIGQKSDENDYKGARNRRFLLFPGSGIFKKRPKWVVSAE 670 Query: 537 LLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQI-GQLT 594 L++ S + + + L LV+++ W +G + A+ ++ + G + Sbjct: 671 LVETSKLYG---RMNATIQPEWLEPLAKNLVKKTYLEPHWSIKRGQVMAYEQVSLFGLII 727 Query: 595 VKVQPL--AKPSEDELHQAMLNGIRDKG 620 + + + A+ H+ + +G Sbjct: 728 IPRRRIGYAQIDPVVSHEIFIREALVQG 755 >UniRef50_A5E397 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E397_LODEL Length = 1015 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 149/523 (28%), Positives = 251/523 (47%), Gaps = 15/523 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLP+ + +L+ + +++ TG+GK+T + + + I +PRR+AA Sbjct: 427 SLPIYKMKRDLINQIRDNQFLVIVGETGSGKTTQIVQYIYEVGLNQSKIIGCTQPRRVAA 486 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE ++ G VGY +R + NT+++ +T+G+L R DP LS +++ Sbjct: 487 TSVARRVAEEMDVHLGGLVGYNVRFDDKTSTNTKIKYLTDGMLLREALTDPSLSKYSVIM 546 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL + +LK+++ SATLD+++ + PV+ GR+F Sbjct: 547 LDEAHERTIATDVLFGLLKKAAKA-NPNLKVIVTSATLDSNKFSKFFNSCPVINIPGRTF 605 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PV+ Y P A+ + + +G +L+FL G EI+ E L R+ Sbjct: 606 PVDIVYTNKPEMDYLAAAIDSVCQIHISEPAGDILVFLTGQEEIEVASEILQERMKMLQP 665 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 +++ P Y +L ++Q + P GMRKVVLATNIAETSLTI+GI+ VVD ++ Sbjct: 666 NDPLMIILPCYSSLPSDEQLRIFEETPAGMRKVVLATNIAETSLTIDGIKYVVDSGYCKL 725 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 D GL L +SQA +QR+GRAGR PG L + + A S PEI + Sbjct: 726 NLQDVTLGLDMLKICPISQAQASQRSGRAGRTGPGKCYRLYTESIYSKLAPSSTPEIRRR 785 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAAL 414 +L+ ++ L S W+D P + + AA + L+ L AL+ + ++ G ++ + Sbjct: 786 NLASSVLMLKAMHLS---TFEWMDPPSMQAVNAAYKQLKQLKALDEKLEITKLGVDLSKI 842 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 +P LA ++ ++ I A+L + + W + Sbjct: 843 PTEPSLAKCILLSEEMGCTMEMLAIVAMLSIQNVFHRPKAQRKLADQVIARWTHSISDHI 902 Query: 474 KRLNVRGG--EADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 L V + +S+ F + R+ Q QL + Sbjct: 903 TLLRVYTEFVKVESARKLDWCKRNFVQHSSLRKAQQIVEQLRS 945 >UniRef50_C5DJP0 KLTH0F17974p n=2 Tax=Saccharomycetaceae RepID=C5DJP0_LACTC Length = 1108 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 159/532 (29%), Positives = 259/532 (48%), Gaps = 24/532 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GK-IILLEPRRLA 60 SLP V ELL + V++ TG+GK+T L L N G+ + +PRR+A Sbjct: 396 SLPAYQVRSELLQLIRDNQVVVVIGETGSGKTTQLAQFLNEDGFCNSGRLVGCTQPRRVA 455 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A + + G+ VGY +R ++ +T+++ +T+G+L R L + Sbjct: 456 AMSVATRVAMEMGVELGNEVGYSIRFEDKTSKDTKIKFMTDGILLRETLVSEMLDKYSCI 515 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D+ +L ++ R DLKL+I SAT++ +R + AP GR+ Sbjct: 516 IMDEAHERSLNTDVLFGILKNLLSKRR-DLKLIITSATMNANRFSRFFGAAPQFTIPGRT 574 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQEQLASRI-- 236 FPV+ Y P + A+ A L +G +L+F+ G +I+ + ++ Sbjct: 575 FPVQVVYSRHPVSDYVESAIVQACKIHLSTPVSNGDILIFMTGQEDIEATCAGVYEKLLD 634 Query: 237 -------------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEG 283 D+ + P+Y AL + Q K P P RKVV+ATNIAETSLT+EG Sbjct: 635 VYAKRSGKQQLNQPEDIEILPIYSALPADVQGKIFEPTP-NKRKVVVATNIAETSLTVEG 693 Query: 284 IRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE-QAE 342 +R V+DC ++ ++P+ GL L +S AS QR+GRAGR PG + L ++ + Sbjct: 694 VRYVIDCGYSKLKVYNPQIGLDSLQIAPISMASANQRSGRAGRTGPGFAYRLYTEDSFFD 753 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-G 401 Q+ PEI +++LS L+ L G +D ++D PP ++ + L +GAL+ Sbjct: 754 DMYVQTIPEIQRTNLSNTLLLLKYLGVNDIMAFPFVDPPPEQIIMTSLFELWTIGALDNF 813 Query: 402 ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSR 460 L+ G++MAA P L+ ML+ + + + I ++L P + + Sbjct: 814 GNLTELGKQMAAFPLQPSLSKMLLVSSQNGCSEEILTIVSMLSVPQVFYRPKEREKESDQ 873 Query: 461 NQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + + L LNV +S + F + +R ++ R QL Sbjct: 874 CRTRFFVPESDHLTLLNVYSQWKANSYSSHWCRRNFLQFKSLQRAREIRRQL 925 >UniRef50_A2EVN8 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2EVN8_TRIVA Length = 1006 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 149/516 (28%), Positives = 249/516 (48%), Gaps = 14/516 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLAA 61 LP++ +++ L +L TG GK+T +P LL GI G I + +PRR+AA Sbjct: 347 LPISDYESQIIDMLSKNRVFILVGETGCGKTTQIPQFLL-RSGIAGDLMIGVTQPRRVAA 405 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+A+ N GD +GY++R + NT+++ +T+G+L + D +LS G+++ Sbjct: 406 ISVAKRVADETNSIIGDLIGYQVRFEEKTSRNTKVKFMTDGMLLKECLGDRQLSNYGVIM 465 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ L+ ++ D LK+++ SATL ++ PV+ GR+F Sbjct: 466 LDEAHERTIHTDVLFGLMKELLSK-DDRLKVIVTSATLQKEKFSSFFFNCPVLEVPGRTF 524 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEML-RQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 PV + +V ++ G +LLFL G +I EQ+ R Sbjct: 525 PVTTSFAVTAFTDYLQASVNTVLKLHQTEEKPGDILLFLTGQDDIDTACEQIYQRSKPME 584 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 +++ P+Y +L Q P P G RKVV+ATNIAETS+TI+GIR VVD + Sbjct: 585 ENFGKLIVLPIYSSLPTEQQTMIFQPTPPGQRKVVVATNIAETSITIDGIRYVVDPGLVK 644 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 R+DPRTG+ L +S+A+ QR GRAGR G + L ++ + PEI Sbjct: 645 EMRYDPRTGMDTLEVVPISKAAANQRKGRAGRTAAGKCIRLYTEDSYNNEMKETTIPEIQ 704 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 +S+++ + +++ G D ++D+PP ++ A L LGAL+ E L+ G+ M+ Sbjct: 705 RSNMAMVALDMKVIGIDDLIGFDFMDKPPTKIIIDALDQLYTLGALDEEGNLTPLGRDMS 764 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR-MGNSDLGVAFSRNQPAWQQRSQQ 471 +P+LA ML+ + + + AIL + + Sbjct: 765 KFSLNPQLAKMLIMSSMLGCSEEVLVLVAILSVQGIWYRPRKKQAEADAMKARLNRDEGD 824 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQD 507 + L+V + + + +R +D Sbjct: 825 HMTLLHVFREWQKNGEREAWCKENYVHYRSLKRAKD 860 >UniRef50_Q5CYX6 Prp16p pre-mRNA splicing factor. HrpA family SFII helicase n=2 Tax=Cryptosporidium RepID=Q5CYX6_CRYPV Length = 1042 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 157/532 (29%), Positives = 254/532 (47%), Gaps = 30/532 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLPV V L+ + V++ TG+GK+T L L G I +PRR+AA Sbjct: 318 SLPVYKVRDSLIKLIGEHMVVVVVGETGSGKTTQLTQYLHEFGYSKRGIIGCTQPRRVAA 377 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VAQR+A+ +N G VGY +R ++ +T ++ +T+GVL R DPEL +I Sbjct: 378 VSVAQRVADEMNVDLGKEVGYTIRFEDFTSKSTVIKYMTDGVLMRESLSDPELERYSAII 437 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ + V R D +L++ SAT+D+++L AP+ GR+F Sbjct: 438 MDEAHERSLNTDVLFGIFRSVLSNRR-DFRLIVTSATMDSEKLSSFFGNAPIFNIPGRTF 496 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEML----------------RQESGSLLLFLPGVGEI 225 PVE YL D AV +++ G +L+F+ G +I Sbjct: 497 PVEIEYLRYFPDDYIDAAVRQCLKIHCTNPLSLLENKDNSDEKQKKDGDILIFMTGQEDI 556 Query: 226 QRVQEQLASRIGS-------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 + ++ ++ + +++ P+Y L + Q K P+P RKV++ATNIAETS Sbjct: 557 EATCILISEKLENLMIDGADPLMILPIYSQLPSDLQAKIFKPSP--YRKVIVATNIAETS 614 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT++GIR V+DC +V ++P+ G+ L +SQA+ QR+GRAGR+ GI + + Sbjct: 615 LTLDGIRYVIDCGLCKVKVYNPKIGMDSLQITPISQANALQRSGRAGRVSSGICYRMYTE 674 Query: 339 EQA-ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLG 397 + S PEI +++LS +++ L G D ++D P ++ + L LG Sbjct: 675 QTFLADMLPNSVPEIQRTNLSNVVLLLKSLGSEDVFSFPFIDPPSSSSISTSLYQLWSLG 734 Query: 398 ALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLG 455 AL+ L+ G++MA DP L+ +L++A D A + A+L P D Sbjct: 735 ALDDNGSLTDLGRQMARFPLDPPLSKVLLTANKLDCLIEAIVVVAMLTVPSIFYRPKDRL 794 Query: 456 VAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQD 507 ++ + L LN+ F + A R ++ Sbjct: 795 EEADASREKFSIPESDHLTLLNIFIQWKRHGSNVRWSERHFLHQKALMRVEE 846 >UniRef50_Q6AL39 Related to ATP-dependent helicase HrpA n=1 Tax=Desulfotalea psychrophila RepID=Q6AL39_DESPS Length = 1257 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 176/653 (26%), Positives = 294/653 (45%), Gaps = 65/653 (9%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 ++ LP+ E++TA+ ++++ TG+GK+T LP L + +PRRLA Sbjct: 17 LTILPIDKHKDEIITAIKENQVIVIAGDTGSGKTTRLPQYCLEVAQEGKLVGCTQPRRLA 76 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+ E + + VGY++R + T+++ +T+GVL + D +L ++ Sbjct: 77 AVSVAARVGEEVGRS--EEVGYKIRFHDYTTAKTKIKFMTDGVLLAETKSDRDLRKYSIL 134 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D L L + R DLKL+I SAT+D + AP++ EGR+ Sbjct: 135 IVDEAHERNLNIDFLLGYLKRLLP-RRPDLKLIITSATIDTASFAKHFNNAPLISIEGRT 193 Query: 181 FPVERRYLPLPAHQ--RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FP++ RY P+ + V + LR+ L+FLP +I+ E LA I Sbjct: 194 FPIDLRYAPIADEDEDYLEHCTGVVSQLFLRERPADTLIFLPTEKDIRNCCEMLAKHIP- 252 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGM-RKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +V + PL+G L +DQR+ P PQG K+V+ATN+AETS+T+ GIR V+D R+ Sbjct: 253 NVEILPLFGRLQGSDQRRIFQPCPQGKIAKIVVATNVAETSITVPGIRYVIDSGLARMTY 312 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + R+ T L Q++S+AS QR GR GR+ G + L A+E + PEI +S+L Sbjct: 313 YSVRSKTTSLPIQKISRASCDQRKGRCGRVSSGTCIRLFAEEDYLGRDEFTLPEIKRSNL 372 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGND 417 + +L+++ DP + ++D P + LLQ LGA++G L+ +G+ MA L D Sbjct: 373 AEVLLQMSSLKLGDPNKFPFVDPPATSTIRDGYALLQELGAIKGYELTLRGKIMADLPID 432 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL 476 P ++ +L+ A ++ IAA L + PR+ ++ + + + + L Sbjct: 433 PCISRILIEASSNSCLRETMIIAAALSVQDPRIRPAEKEKEADQVHQRFAHKHSDFMALL 492 Query: 477 NVRGGEADSSLIAPL------LAGAFAD---------------RIARR------RGQDGR 509 N+ + F RI +R DG Sbjct: 493 NIWNSFHEEEEKKSWSRLKKFCKSNFLSFQRMREWLDLHEQLCRIVKRYKEFSFNENDGS 552 Query: 510 ------------------------YQLANGMGAMLDANDALSRH--EWLIAPLLLQGSAS 543 Y A M+ L + +W++A L Sbjct: 553 YEQIHRSILAGFLRNIALKKEKKIYMGAGNRELMVFPGSHLFQSAGQWIMAAGFLDT--- 609 Query: 544 PDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV 595 L +++D + L + S W+ G + A ++ + L + Sbjct: 610 NRLYALTVATIEVDWIEPLAKSLCRYSWANPRWEKKTGQVIADEKVTLFGLVL 662 >UniRef50_Q21LQ8 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=Q21LQ8_SACD2 Length = 1296 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 186/683 (27%), Positives = 306/683 (44%), Gaps = 72/683 (10%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP++ ++ + V+L+ TG+GK+T LP L GI G I +PRR+AAR Sbjct: 76 LPISEKRADIAELIANNQVVILAGETGSGKTTQLPKICLELGRGIRGLIGHTQPRRIAAR 135 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA R+A+ L GD VGY++R + V +T ++++T+G+L IQ+DP L +I+ Sbjct: 136 TVADRIAQELQVPLGDAVGYQVRFTDHVTDSTLIKLMTDGILLAEIQQDPLLLKYDTLII 195 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D L L + R DLKL++ SAT+D DR + APV+ GR++P Sbjct: 196 DEAHERSLNIDFLLGYLKQILAK-RPDLKLIVTSATIDLDRFSKHFNNAPVIEVSGRTYP 254 Query: 183 VERRYLPLPAH-QRFDDAVAVATAEMLRQESG---SLLLFLPGVGEIQRVQEQLASRIGS 238 VE Y P + A+ A E+ G +L+FL G +I+ L Sbjct: 255 VEVLYRPWHDEFEDLTQAIVNAVEEIQSISKGRGGDVLVFLSGERDIREASHALKKANLP 314 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 + PLY LSL +Q + +P R+VVLATN+AETSLT+ GIR V+D R+ R+ Sbjct: 315 HWEIVPLYARLSLEEQNRVF--SPHKGRRVVLATNVAETSLTVPGIRYVIDPGTARIKRY 372 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 RT + RL + +SQAS QR GR GR+ G+ + L +E E + ++PEIL+S+L+ Sbjct: 373 SLRTKVERLPVENISQASANQRKGRCGRVSDGVCIRLYDREDFESRSEFTDPEILRSNLA 432 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGND 417 +++++LQ D + ++D+P + +LL+ LGA++ R++ G+ + L D Sbjct: 433 AVILQMLQMRIGDVRKFPFVDKPDNRLINDGFKLLEELGAVDKSNRVTKLGRDLQQLPLD 492 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL 476 P+ M+V+A I + L + PR +D A + L + Sbjct: 493 PKFGRMIVAAAEQGCLRELLIIVSGLTIQDPRERPADKQQAADEKHRRFWDEKSDFLSLV 552 Query: 477 NVR------GGEADSSLIAPLLAGAFADRIARR--------------------------- 503 N+ E + + L F + + R Sbjct: 553 NLWHYVEEQRQELSQNQLRKLCQKEFLNFMRLREWRELHHQLRVTIKKMGFKENQEPASY 612 Query: 504 --------------------RGQDGRYQLANGMGAMLDANDALS--RHEWLIAPLLLQGS 541 Y+ M+ AL R +WL A +++ S Sbjct: 613 DVVHEALLTGLLSNMGNKNEEPDARDYRGTRNRKFMIFPGSALRKKRPKWLFAAEMIETS 672 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 ++ + ++ L++ + +D G +KA+ R+ + L + + Sbjct: 673 ---QVYAHCVAQMEPEWALKSGAHLLKYNYFEPHYDKRAGQVKAFVRISLFGLVLIEKKR 729 Query: 601 ---AKPSEDELHQAMLNGIRDKG 620 +K E + + +G Sbjct: 730 VGYSKIDPAEAREVFIRAALVEG 752 >UniRef50_A6VYA9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=A6VYA9_MARMS Length = 1308 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 199/806 (24%), Positives = 338/806 (41%), Gaps = 96/806 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAA 61 SLPVA E++ A+ V+++ TG+GK+T LP L A GI G I +PRR+AA Sbjct: 81 SLPVATRADEIIKAIQDNQVVIIAGETGSGKTTQLPKMCLQAGRGIAGLIGHTQPRRIAA 140 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+++ L G+ VG+++R + T ++++T+G+L IQ+D L +I Sbjct: 141 RSVAERISDELQVNLGEQVGFQVRFSDESNEETLIKLMTDGILLAEIQQDKRLYKYDTII 200 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L V R DLK+++ SAT+D +R + AP++ GR++ Sbjct: 201 IDEAHERSLNIDFLLGYLKQVLAA-RPDLKVIVTSATIDVERFSEHFENAPIIEVSGRTY 259 Query: 182 PVERRYLPL---------PAHQRFDDAVAVATAEMLRQES-------GSLLLFLPGVGEI 225 PVE RY PL Q + + A ++ +E G +L+FLPG EI Sbjct: 260 PVEIRYQPLLSKSDSEELDEDQSMEQGILDAVELLIAEERQSGYRGAGDILVFLPGEREI 319 Query: 226 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 + E L + PLY LS ++Q++ R++VL+TN+AETSLT+ GIR Sbjct: 320 RDTAEILRRAELRSTEVLPLYARLSASEQQRIFKS--HSGRRIVLSTNVAETSLTVPGIR 377 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 V+D R++R+ R+ + +L +++SQAS QRAGR GR+ GI + L +E Sbjct: 378 YVIDPGLARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVADGICIRLYDEEDFNNRP 437 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLS 405 ++PEI +++L+ +++++ + +++ P + R L LGAL ERL+ Sbjct: 438 EFTDPEIFRTNLASVILQMANLKLGAVEKFPFVEMPEKRMINDGYRALTELGALHKERLT 497 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPA 464 G+++A L DP+L +L++A+ A I + L PR D + Sbjct: 498 PIGRQLAKLPIDPKLGRILIAAEQHSVLKEVAIIVSALSIADPRERPQDKKTQSDQAHAV 557 Query: 465 WQQRSQQLLKRLNV---------------------------------------------- 478 + L LN+ Sbjct: 558 DKDEDSDFLVFLNLWERFEEQRQALSQNQLRQYCRKQFLNFMRMREWRDIHRQIMIACKQ 617 Query: 479 -------RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSR--H 529 ++ LLAG F +A + + L + Sbjct: 618 LGFKEVQHEERHYEAIHRALLAGMFTQ-VANKMEDSKEMLGCRSRKLAIFPGSMLFKKPP 676 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRL 588 +W++A L++ S + +D + + V++ ++ QG + A ++ Sbjct: 677 QWIMAAELIETSK---LYARVTARIDPAWIEEYAAPFVKRQYFDPHFERNQGRVMANEQV 733 Query: 589 QIGQLTVKVQPL---AKPSEDELHQA-----MLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 + L + + ++ + ++ G + +L Sbjct: 734 SLYGLIIVAKRRIDYGHVHPEDAREIFIRSGLVEGELRTKQAFFRKNKALMELLE--AQE 791 Query: 641 AKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRL- 699 AK VDDE++ A + L H+ + SL L D Q Sbjct: 792 AKLRKRDIL--VDDETVFAFYNSRLPDHVRNLKSLEHFVKTSPDALLMTREDLINQDVSV 849 Query: 700 -DSELPAHYTVPTGSRIAIRYHEDNP 724 D P + + G + I Y D Sbjct: 850 DDQAFPDSFGL-NGVALPIDYKFDPG 874 >UniRef50_D1H6K3 Whole genome shotgun sequence of line PN40024, scaffold_137.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H6K3_VITVI Length = 1408 Score = 573 bits (1478), Expect = e-162, Method: Composition-based stats. Identities = 161/540 (29%), Positives = 258/540 (47%), Gaps = 30/540 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKII-LLEPRRLA 60 +LP+A+V L+ + +++ TG+GK+T LP LL + GKII + +PRR+A Sbjct: 766 ALPIASVEKRLVEEVQKNDTLIIVGETGSGKTTQLPQFLLNGGFCHDGKIIGITQPRRVA 825 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A VA+R+AE + G VGY +R ++ +TR++ +T+G+L R DP LS ++ Sbjct: 826 AVTVAKRVAEECGVELGQKVGYSIRFEDVTSSSTRIKYMTDGLLLREALLDPFLSRYSVI 885 Query: 121 ILDEFHERSLQADLALALLLDVQQGL-----RDDLKLLIMSATLDNDRLQQMLPEAPVVI 175 I+DE HER++ D+ L LL +VQ LKL+IMSA+LD + A V Sbjct: 886 IVDEAHERTIHTDVLLGLLKNVQNARCQGVKFPSLKLIIMSASLDARGFSEYFGGARSVY 945 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +GR FPV+ Y D A+ L + G +L+FL G EI+ V+ + R Sbjct: 946 IQGRQFPVDIFYTHHAEPDYVDAALITIFQIHLEEGPGDILVFLTGQEEIESVERLVQER 1005 Query: 236 I------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 + +L P++ +L Q KA +PAP G RKV+LATNIAETS+TI GI+ V+D Sbjct: 1006 LRQLPEGSQKLLTVPIFSSLPSEQQMKAFMPAPAGFRKVILATNIAETSVTIPGIKYVID 1065 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 + ++ TG+ L + S+A QR+GRAGR PG L + + + A +E Sbjct: 1066 PGVVKARTYNAHTGIESLDIVKTSKAQALQRSGRAGRERPGKCFRLYPESEFGQLADSTE 1125 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--EGERLSAQ 407 PEI + +LS ++++L G D +L++P + ++ + L +LGA+ + + Sbjct: 1126 PEIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRMAIVKSLEQLFLLGAITDDSKLSDPI 1185 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQ 466 G +MA L DP + L+ A + A+L E + + Sbjct: 1186 GHQMARLPLDPVYSKALILASQFNCLEEMLIAVAMLSVESIFYTPREKLEEARTAMKCFS 1245 Query: 467 QRSQQLLKRLNVRGG--------------EADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + +NV E + F + + R +D Q+ Sbjct: 1246 SPEGDHITLINVYRASDEFVEKIKQGNDKEKTEKKLRKWCKENFINSRSLRHARDIHSQI 1305 >UniRef50_A9US44 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9US44_MONBE Length = 1322 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 148/539 (27%), Positives = 253/539 (46%), Gaps = 32/539 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAAR 62 LP+ AV ELL + +++ TG+GK+T + L A G G I +PRR+AA Sbjct: 610 LPIYAVRQELLNIIRDNQVIIIVGQTGSGKTTQMTQYLYEAGYGDFGTIGCTQPRRVAAM 669 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + + G VGY +R ++ T ++ +T+G+L R + +L +I+ Sbjct: 670 SVAKRVSEEMGVELGKQVGYSIRFEDVTSRETVIKYMTDGILLRESLNEGDLDQYSAIIM 729 Query: 123 DEFHERSLQADLALALLLDVQQG--------------------LRDDLKLLIMSATLDND 162 DE HERSL D+ LL DV R DLKL++ SAT+D+ Sbjct: 730 DEAHERSLNTDVLFGLLRDVVARCGTAAPRCVRPSHSRVPRCIRRRDLKLIVTSATMDST 789 Query: 163 RLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGV 222 + PV GR+FPVE + P + A+ A L+ G +L+F+ G Sbjct: 790 KFATFFGNVPVFNIPGRTFPVEVFFAKNPVDDYVEAAIKQAVQIHLQPHPGDMLIFMTGQ 849 Query: 223 GEIQRVQEQLASRIG------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE 276 +I+ LA R+ + + P+Y L + Q K + +RK ++ATNIAE Sbjct: 850 ADIEATCSVLAERLEALGEDVPPLSILPIYSQLPSDLQAKIFKKS--DVRKCIVATNIAE 907 Query: 277 TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLI 336 TSLT++GI V+D ++ ++P+ G+ L +SQA+ QR+GRAGR PG + L Sbjct: 908 TSLTVDGIMHVIDSGFCKLKCYNPKIGIDDLQIYPISQANANQRSGRAGRTGPGNAYRLY 967 Query: 337 AKEQAER-AAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQM 395 + + + PEI +++L+ +++ L G + ++D PP +L + L + Sbjct: 968 TEAIYKNELLPLTVPEIQRTNLANVVLLLKSLGVENLMDFHFMDPPPQETILNSMYNLWI 1027 Query: 396 LGALEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR-MGNSD 453 LGAL+ L+ G++M DP + ML+ + + + ++ I ++L Sbjct: 1028 LGALDNTGALTPLGRQMVEFPLDPAQSKMLIVSADLECSSEILTIVSMLSVDKHFFRPPG 1087 Query: 454 LGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + + L LN ++ + + F + R+ ++ R QL Sbjct: 1088 REEESDLKREKFAVPESDHLTLLNTYQQWKSNNYSSSWASEHFIHAKSMRKVREIRMQL 1146 >UniRef50_Q31H28 ATP-dependent helicase HrpA n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31H28_THICR Length = 1342 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 168/529 (31%), Positives = 274/529 (51%), Gaps = 22/529 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAA 61 +LPVA E+L + V+++ TG+GK+T +P L A G+ G+I +PRRLAA Sbjct: 97 NLPVAERRDEILELIQNNQVVVIAGETGSGKTTQIPKICLEAGRGVFGRIGCTQPRRLAA 156 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+AE L G VGY++R + V + L+V+T+G+L IQ DP L+ +I Sbjct: 157 RSVAERIAEELGSSLGQLVGYQVRFHDQVHQQSLLKVMTDGILLAEIQNDPYLNQYDTII 216 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERS+ D L +L + R DLKL+I SAT+D +R AP++ GR++ Sbjct: 217 IDEAHERSINIDFLLGILKKLLPKRR-DLKLIITSATIDTERFASFFEGAPIIEVSGRTY 275 Query: 182 PVERRYLPLPA---------HQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQ 231 PVE RY PL Q A+ A E+ + G +L+F G +I+ E Sbjct: 276 PVEVRYNPLVKIEDDEGNEFEQDIPTAIVYALEELSEIDPFGDVLVFQVGERDIKETAEV 335 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L + + + PLY LS+ +Q K + R+V+L+TN+AETSLT+ GI+ V+D Sbjct: 336 LRKQNLKNTEIVPLYARLSMAEQNKVFQTS--QKRRVILSTNVAETSLTVPGIKFVIDPG 393 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R++R+ R+ + RL +++SQAS QRAGR GR+ G+ + L ++ + + PE Sbjct: 394 LVRISRYSVRSKVQRLPIEKISQASANQRAGRCGRVSSGVCIRLYDEDDFKSRPEFTPPE 453 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQK 410 I ++ L+ +++++ Q +++ P + R L +GAL+ + RL+ G+ Sbjct: 454 IHRTSLATVILQMTQMKLGSVKHFPFIEPPEDKAINDGFRQLHEIGALDEKRRLTESGRH 513 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRS 469 +A L DPR+A M++ + + A IAA + + PR N A ++ ++ Sbjct: 514 LAKLPLDPRMAKMVLEGQKNGVLAEVLIIAAAISIQDPRDMNESNRQAANQAHKVFEDPR 573 Query: 470 QQLLKRLNVRGGEAD------SSLIAPLLAGAFADRIARRRGQDGRYQL 512 L LN+ D + + L F + + D +QL Sbjct: 574 SDFLFFLNLWRFYEDKRRHLSQNKLRKLCKTNFLSYLRMKEWHDLFFQL 622 >UniRef50_Q7XIR8 Os07g0508000 protein n=4 Tax=Embryophyta RepID=Q7XIR8_ORYSJ Length = 1280 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 158/524 (30%), Positives = 246/524 (46%), Gaps = 17/524 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP+ V +LL + V++ TG+GK+T L Q L G G + +PRR+AA Sbjct: 583 LPIFTVRDDLLQVVRENQVVVVVGETGSGKTTQL-TQYLHEDGYTTTGIVGCTQPRRVAA 641 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + + G VGY +R ++ PNT ++ +T+GVL R +D +L +++ Sbjct: 642 MSVAKRVSEEMETELGHKVGYAIRFEDMTSPNTIIKYMTDGVLLRETLKDADLDKYRVIV 701 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ +L V R D KL++ SATL+ D+ + PV GR+F Sbjct: 702 MDEAHERSLNTDVLFGILKKVV-ARRRDFKLIVTSATLNADKFSKFFGGVPVFHIPGRTF 760 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PV + P + AV A + G +L+F+ G EI+ LA R+ Sbjct: 761 PVNIMFSKTPCEDYVEAAVKQAMTIHITSGPGDILIFMTGQEEIEATCYALAERLEQLIS 820 Query: 238 ------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 + + P+Y L + Q K A +G RK ++ATNIAETSLT++GI V+D Sbjct: 821 SSTKTVPKLSILPIYSQLPADLQAKIFQKAEEGTRKCIVATNIAETSLTVDGIFYVIDTG 880 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEP 350 ++ ++PR G+ L VS+A+ QRAGRAGR PG L + + P Sbjct: 881 YGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLFTESAYQNEMLPNPVP 940 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQ 409 EI +++L +++ L + ++D PP N+L + L +LGAL L+ G Sbjct: 941 EIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTVIGW 1000 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQR 468 KM DP LA ML+ + + I ++L P D + + Sbjct: 1001 KMVEFPLDPTLAKMLLMGEQLECLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVP 1060 Query: 469 SQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L LNV + F R+ ++ R QL Sbjct: 1061 ESDHLTLLNVYLQWKSNQYRGDWCNDHFLHVKGLRKAREVRSQL 1104 >UniRef50_Q4N829 RNA helicase, putative n=2 Tax=Theileria RepID=Q4N829_THEPA Length = 974 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 152/530 (28%), Positives = 259/530 (48%), Gaps = 35/530 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP+ ELL+A+ +++ TG+GK+T +P L G I + +PRR+AA Sbjct: 309 LPIYYYRTELLSAIKKYKTLIVVGETGSGKTTQIPQYLHEVGYSRAGVIGITQPRRVAAM 368 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+++ LN K G TVGY +R ++ NT+++ +T+G+L R +P L ++++ Sbjct: 369 SVATRVSKELNVKMGSTVGYCIRFEDYTSSNTKIKYMTDGILLREFASNPTLENYSVIMI 428 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER+L D+ L+ D+ + R+D +L+I SATL+ ++ AP+ GR +P Sbjct: 429 DEAHERTLHTDVIFGLVKDLIR-YRNDFRLIISSATLEAEKFALYFDNAPIFKIPGRRYP 487 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIG---- 237 V+ Y P D ++ L Q G +L+FLPG EI+ +QE+L +R+ Sbjct: 488 VQIYYTKTPEANYLDASIITILQIHLTQPIDGDILVFLPGQQEIEYIQEELIARLKNRKD 547 Query: 238 -SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 ++++ +Y +L + Q K P P+ RKV+L+TNI+ETS+T++ I V+D +++ Sbjct: 548 IRELIILSIYSSLPSDMQNKIFEPTPENSRKVILSTNISETSITLDNIVYVIDTGFCKLS 607 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQS 355 + P+TGL LI S+A+ QR+GRAGR+ G L K ++ EPEI + Sbjct: 608 LYSPKTGLDSLIVVPCSKANANQRSGRAGRVRAGHCFRLYTKLSYDKEMEDNHEPEIKRV 667 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAAL 414 +LS +++ L G D ++D P +L+ + L+ LG L + L+ G+ M+ L Sbjct: 668 NLSSVVLLLKSIGIDDLLNFDFMDPPTPESLINSLELIYSLGCLNDSGELTKLGKIMSEL 727 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAIL-------------------EEPPRMGN---- 451 DP + L+ + + I ++L R+GN Sbjct: 728 PLDPMYSKSLLFSIQHNCHEDIIIILSMLIQSIFYLVIHSFNLHTYPNSISQRLGNNIFY 787 Query: 452 --SDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADR 499 D + N + + L LNV ++ + Sbjct: 788 IPKDRRIHAENNYKNFYNNNSDHLMLLNVYNQWKENDFSIAWCYENYLQY 837 >UniRef50_Q55CD3 DEAD/DEAH box helicase n=2 Tax=Eukaryota RepID=Q55CD3_DICDI Length = 730 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 162/499 (32%), Positives = 254/499 (50%), Gaps = 23/499 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 SLPV LL V++ + TG GK+T +P L + NG I + +PRR+AA Sbjct: 72 SLPVFTAKDALLKNFKEHSTVIIISETGTGKTTQIPQYLYENGYKDNGIIAITQPRRVAA 131 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++++R+++ + + GD VGY +R + T+L+ +T+G+L R D LS ++I Sbjct: 132 VSISKRVSQEMGVELGDQVGYCVRFDDKTNEKTKLKYMTDGMLVREAMLDSSLSKYSVII 191 Query: 122 LDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 LDE HER+L D+ LL +Q+ ++ LK++IMSATLD + Q APV+ EGR Sbjct: 192 LDEAHERTLNTDVLFGLLKSIQKRREKKNPLKIIIMSATLDAELFSQYFNNAPVLYIEGR 251 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLR------------QESGSLLLFLPGVGEIQR 227 FPV+ Y D A+ + ++ G +L+FL G EI+ Sbjct: 252 QFPVQIYYTEEIQKDYVDAALITVLQIHIAHLTDKSINKEEEEDGGDILVFLTGRDEIEN 311 Query: 228 VQEQLASRIGS------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTI 281 +++ L RI D+++CP++ AL Q K AP+G RKV+LATNIAETSLTI Sbjct: 312 LEKLLLDRIPRLPVGSKDLIVCPIFSALPQEQQMKVFEKAPKGSRKVILATNIAETSLTI 371 Query: 282 EGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA 341 GIR VVD + F+P+ G+ L +S+AS QR GRAGR G L +E Sbjct: 372 NGIRYVVDSGAVKSKIFNPKIGIDSLNIIPISKASAKQRTGRAGREFEGKCYRLYTQETF 431 Query: 342 ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-E 400 E+ S PEI +S+++ ++++L G +D +L+ PPV +++ + LL L A+ + Sbjct: 432 EKLDTSSIPEIKRSNIANVILQLKTIGINDILSFDFLESPPVASVIKSLELLFCLDAISD 491 Query: 401 GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFS 459 L+ G+KMA DP + L+ + + + I +IL E + Sbjct: 492 NGSLTELGKKMALFPLDPMYSKTLIKSIEFECSEEVLIIISILSVESIFFTPKEKKKEVE 551 Query: 460 RNQPAWQQRSQQLLKRLNV 478 + + + LNV Sbjct: 552 DVKKIFFSPDGDHITFLNV 570 >UniRef50_Q6CF95 YALI0B09053p n=1 Tax=Yarrowia lipolytica RepID=Q6CF95_YARLI Length = 1077 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 152/521 (29%), Positives = 248/521 (47%), Gaps = 13/521 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAAR 62 LP AV LL + ++ TG+GK+T L L A G I +PRR+AA Sbjct: 402 LPAFAVRDPLLQVIQSNQVTIVIGETGSGKTTQLTQYLYEAGYAERGMIGCTQPRRVAAM 461 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VAQR+++ + + G VGY +R ++ P T+++ +T+G+L R DP L VI+ Sbjct: 462 SVAQRVSQEMEVRVGQEVGYAIRFEDHTSPATKIKYLTDGILLRETLTDPTLDNYSCVIM 521 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER+L D+ L L + R DLKL++ SAT+++ R AP GR++P Sbjct: 522 DEAHERALNTDILLGLFRTILAKRR-DLKLIVTSATMNSKRFSDFFGGAPTFTIPGRTYP 580 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQEQLASRIGSD- 239 V + P AV + + E +G +L+F+ G +I E L R+ D Sbjct: 581 VSVHHERAPVDDYVAAAVKKVLSIHVSSEVSTGDILVFMTGQEDITVTCEVLEERLQKDL 640 Query: 240 -----VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 +++ P++ + + Q K AP G+RK ++ATNIAETSLT++GI VVD + Sbjct: 641 DNPAPLMILPIFSQMPADLQNKIFNKAPPGVRKCIVATNIAETSLTVDGITFVVDAGYSK 700 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEIL 353 + + P+TG+ L +S A QR+GRAGR G + L + E + PEI Sbjct: 701 LKVYSPKTGMDSLQVAPISVAQAVQRSGRAGRTAKGTAYRLYTEHAEREEMYPTAIPEIQ 760 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 +++L+ L+ L G +D + +++D PP ++A+ L LGA++ ++ G KM+ Sbjct: 761 RTNLANTLLLLKSVGVTDLMKFAFMDPPPKDTIMASLYELWSLGAVDNLGNITQLGMKMS 820 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQ 471 DP L +L+ + + + + A+L P + + + Sbjct: 821 QFPMDPCLGKILIKSVDYGCSKEMLSVVAMLCVPTVFYRPPERQQEADSAREKFFVPESD 880 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L L+V + A F A + + R QL Sbjct: 881 HLTLLHVYTQWLHNKKSPVWCAKHFLHAKALEKAHEVREQL 921 >UniRef50_Q1C7D5 ATP-dependent helicase HrpA n=4 Tax=Bacteria RepID=Q1C7D5_YERPA Length = 644 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 162/489 (33%), Positives = 264/489 (53%), Gaps = 15/489 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV+ ++ A+ ++++ TG+GK+T LP L G+ G I +PRRLAA Sbjct: 72 NLPVSQKKQDIYNAIRDHQVIIVAGETGSGKTTQLPKICLELGRGVKGVIGHTQPRRLAA 131 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ L+ G VGY++R + VG NT ++++T+G+L IQ+D L +I Sbjct: 132 RTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLI 191 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK++I SAT+D R Q AP++ GR++ Sbjct: 192 IDEAHERSLNIDFILGYLRELLPK-RPDLKVIITSATIDPQRFSQHFNNAPIIEVSGRTY 250 Query: 182 PVERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE RY P+ A+ A E+ R+ +G +L+F+ G EI+ + L + Sbjct: 251 PVEVRYRPIVDDADDVDRDQLQAIFDAVDELGRESAGDILIFMSGEREIRDTADALIKQN 310 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS ++Q + R++VLATN+AETSLT+ GI+ V+D R++ Sbjct: 311 LPHTEVLPLYARLSNSEQNRVFQS--HHGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ RT + RL + +SQAS QR GR GR+ GI + L +++ ++PEIL+++ Sbjct: 369 RYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFTDPEILRTN 428 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-----GERLSAQGQKM 411 L+ +++++ G D A +++ P N+ RLL+ LGA++ ++L+ G+++ Sbjct: 429 LASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQLTPLGRQL 488 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQ 470 A L DPRLA M++ A+ I + L + PR D A + + Sbjct: 489 AQLPVDPRLARMVLQAQKSGCVRELMIITSALSIQDPRERPVDKQQASDEKHRRFADKDS 548 Query: 471 QLLKRLNVR 479 L +N+ Sbjct: 549 DFLAFVNLW 557 >UniRef50_B0ECA9 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative n=2 Tax=Entamoeba RepID=B0ECA9_ENTDI Length = 845 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 148/521 (28%), Positives = 265/521 (50%), Gaps = 14/521 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 LP+ E++ ++ ++ TG+GK+T + L+ G NGKI +PRR+AA Sbjct: 225 ELPIFFKKKEIIRSIKENQINIIIGETGSGKTTQIAQYLMEEGIGKNGKIGCTQPRRVAA 284 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VAQR++E + K G+ VGY +R ++ T+++ +T+G+L R + +DP L ++I Sbjct: 285 VSVAQRVSEEVGSKLGEEVGYLIRFEDKTSKKTKIKFMTDGILLREVIKDPMLEEYSVII 344 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ ++ + Q R+DLKL+I +AT++ ++L + P++ EGR+F Sbjct: 345 MDEVHERSLNTDILFGIIKRIIQE-RNDLKLIITTATINENKLIEFFGIIPIIHIEGRTF 403 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL-------AS 234 PV YL + A+ + + QE G +L+F+ G +I+ E L Sbjct: 404 PVSVEYLKTTPKDYIEMAIKQILSIHMNQEKGDILVFMTGQEDIEVSCELLKEKYKEIKE 463 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++ + P+Y LS Q+K + + RKV+++TNIAETSLT++GI+ V+D + Sbjct: 464 EKKQEIEIIPIYSQLSNEAQKKIFIKS--NKRKVIISTNIAETSLTVKGIKYVIDSGLGK 521 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEIL 353 ++P+ G+ L S+ + QR GRAGR E GI L + PEI Sbjct: 522 WKIYNPKIGMETLQIFPESKQNAEQRKGRAGRTETGICYRLFTENTFKYELLESPIPEIQ 581 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMA 412 +S+L+ +++EL G +D ++ +D+P +L + L +LGAL+ ++ G++M Sbjct: 582 RSNLNNVILELKAIGINDINKIELIDKPNEERILNSMYELWILGALDEIGNITKLGKEMV 641 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQ 471 L +P L+ M++ ++ + I A+L P + + ++ + Q Sbjct: 642 ELPLEPSLSKMVIISQKFECIKEVLTIVAMLTVPNIFIRPKEREKEADISREKFYQPDSD 701 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + +NV + + + A + +D R QL Sbjct: 702 HITLINVYNQWKEHEENEQWCNKNYINSKAMNKAKDIRNQL 742 >UniRef50_Q2Y975 ATP-dependent helicase HrpA n=2 Tax=Proteobacteria RepID=Q2Y975_NITMU Length = 1329 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 180/696 (25%), Positives = 295/696 (42%), Gaps = 108/696 (15%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LPV A+ E+ A+ V++S TG+GK+T LP L G++ I +PRR+AA Sbjct: 29 ELPVVALRQEIAQAIQKNQVVIISGETGSGKTTQLPKICLELGWGLHAMIGHTQPRRIAA 88 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A L G VGY++R + V P T ++++T+G+L Q DP L +I Sbjct: 89 RTVAARIASELKSPLGHAVGYKVRFSDKVSPETYVKLMTDGILLAETQGDPNLLAYDTII 148 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLKL++ SAT++++R APV+ GR + Sbjct: 149 IDEAHERSLNIDFLLGYLKQLLP-RRPDLKLIVTSATINSERFSAHFHNAPVIEVSGRMY 207 Query: 182 PVERRYLPL---------------------------------------PAHQRFDDAVAV 202 PVE RY P+ + A+ Sbjct: 208 PVEVRYRPIEAPARAASAIAEDRNEDKAGNKTRDKDKDRQKDKHKDRDRDEGDIEQAILD 267 Query: 203 ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-------GSDVLLCPLYGALSLNDQR 255 A E+ R G +L+FLPG EI+ E L + + PL+ S DQ Sbjct: 268 AVDEINRCGPGDVLVFLPGEREIRDTAEALRKHAFGGPGTGRAGAEILPLFARQSYADQE 327 Query: 256 KAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQA 315 + P +R++VLATN+AETSLT+ GIR V+D R+ R+ R + +L +++S+A Sbjct: 328 RVFKPGGSSLRRIVLATNVAETSLTVPGIRYVIDTGVARIKRYSYRNKVEQLQVEKISRA 387 Query: 316 SMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQM 375 S QRAGR GR+ GI L +++ ++PEIL+S L+ +++ + Sbjct: 388 SANQRAGRCGRVMSGICFRLYSEQDYLARPEFTDPEILRSSLAAVILRMKSLKIGSIENF 447 Query: 376 SWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 +L+ P + +LL LGA++ L++ G ++A DPR+A M+++AK ++ Sbjct: 448 PFLEPPLPRMIADGYQLLAELGAVDESNTLTSIGWRLARFPIDPRIARMILAAKEENCLT 507 Query: 435 TAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL-------------------- 473 IA+ L + PR + A R ++Q L Sbjct: 508 EMLIIASALSVQDPRDRPFERQEAADRAHQSFQDERSDFLGYLKLWDFFDDLLKHKKSNR 567 Query: 474 -------------KRLNVRGGEADSSLIAPLLAGAFA-------DRIAR----------- 502 +R+ + G D I R Sbjct: 568 KLIEQCQENFLSHRRMREWREVHGQLHTLVVETGFKPNKIPANYDEIHRALLAGLLGNIG 627 Query: 503 -RRGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDEL 559 R +D Y G+ + L ++ +W++A L + + + +D + Sbjct: 628 FRIDEDNEYLGTRGIKFSIFPGSVLKKAKPKWIVAAELTETTRLYGRGV---AKIDPAWV 684 Query: 560 VQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLT 594 + + ++ W+ + A+ R+ + LT Sbjct: 685 ERIGGKFCKKHYFDPHWEKKSAQVSAFERVTLYGLT 720 >UniRef50_Q0S1M3 ATP-dependent helicase hrpA n=5 Tax=Corynebacterineae RepID=Q0S1M3_RHOSR Length = 1296 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 198/695 (28%), Positives = 314/695 (45%), Gaps = 83/695 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLPV+ ++ A+ V+++ TG+GK+T +P L G+ G I +PRRLAA Sbjct: 68 SLPVSQRRDDIAKAIAENQVVIVAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAA 127 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA+R+AE L + G+TVGY +R + V T ++++T+G+L IQRD L +I Sbjct: 128 RTVAERIAEELRSELGETVGYTVRFTDQVSDGTLVKLMTDGILLAEIQRDRMLRRYDTLI 187 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVIS 176 +DE HERSL D L L + R DLK++I SAT+D +R Q AP+V Sbjct: 188 IDEAHERSLNIDFILGYLRQLLP-RRPDLKVIITSATIDPERFAQHFATDDGVPAPIVEV 246 Query: 177 EGRSFPVERRYLPLPAH-------QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 GR+FPVE RY PL + DAV A E+ + G +L+FL G EI+ Sbjct: 247 SGRTFPVEMRYRPLTVDVGDQTFDRDPVDAVCEAVEELSGEGDGDILVFLSGEREIRDTA 306 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 + L R + PLY LS +Q K P R+VVL+TN+AETSLT+ GIR VVD Sbjct: 307 DALRDRRLRGTEIVPLYARLSAAEQHKVF--TPHTGRRVVLSTNVAETSLTVPGIRYVVD 364 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++R+ RT + RL + +SQAS QR+GR GR+ GI + L ++E E A +E Sbjct: 365 PGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDFEARPAFTE 424 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER------ 403 PEIL+++L+ +++++ G D A ++ P + LL+ LGA+E + Sbjct: 425 PEILRTNLASVILQMTALGLGDIAAFPFVQPPDPRAVRDGIGLLEELGAIERKAQNEQPV 484 Query: 404 LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQ 462 L+A G+++A + DPR+A MLV A + A I + L + R ++ A Sbjct: 485 LTAVGRELAQIPVDPRMARMLVEAHRNGCLAEVLVIVSALSIQDVRERPAEFQQAADEKH 544 Query: 463 PAWQQRSQQLLKRLNVRG------------------------------------------ 480 + + L L + Sbjct: 545 ARFTVENSDFLAFLELWKYLREQRNELSSNQFRKMCRNEFLHWLRIREWQDLHGQLRQIT 604 Query: 481 ---------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE- 530 A + I L I R G + A G + +L + Sbjct: 605 RGLGWDTTDTPAGEAAIHQSLLAGLLSHIGLREGDKRDFLGARGSRFAVFPGSSLFKKPP 664 Query: 531 -WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRL 588 W++A L++ S ++ ++ + + P LV+++ W +G A+ R+ Sbjct: 665 RWVMAAELVETSRLWA---RMSARIEPEWAEKLAPHLVKRTYSEPHWSSKRGAAMAYERV 721 Query: 589 QIGQLTVKVQPL---AKPSEDELHQAMLNGIRDKG 620 + + + + + + + +G Sbjct: 722 TLYGIPLVARRAVTYSTIDPETSRDLFIRHALVQG 756 >UniRef50_A7AVM7 DEAH box RNA helicase, putative n=3 Tax=Piroplasmida RepID=A7AVM7_BABBO Length = 1016 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 142/528 (26%), Positives = 249/528 (47%), Gaps = 22/528 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LPV ELL+ + +++ TG+GK+T L L G I +PRR+AA Sbjct: 329 LPVFKCRDELLSYIGQFQVMVVVGETGSGKTTQLAQFLYESGYYKRGVIGCTQPRRVAAV 388 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +V QR+A + + GD VGY +R ++ NT ++ +T+G+L R DP+L +I+ Sbjct: 389 SVCQRVAAEMGSRVGDLVGYSIRFEDLTSRNTAVKFMTDGILLRETLMDPDLDRYSCIIM 448 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ +L V R D+++++ SAT+D D+ + P+ GR+FP Sbjct: 449 DEAHERSLNTDVLFGILKSVV-ARRRDIRVIVTSATMDADKFARFFGNCPIYKIPGRTFP 507 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS---- 238 V Y+ + + AV + + + G +L+F+ G +I E L ++ Sbjct: 508 VRIEYMRSMGNDYVESAVDKCVSLHISEGPGDVLIFMTGQDDINATCELLDLKLYKVMQS 567 Query: 239 -------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 + P+Y L Q++ P RKV+++TNIAETSLT++GI+ V+D Sbjct: 568 TTRADLQPFCVLPIYSQLPSELQQRVFKKYP--YRKVIVSTNIAETSLTLDGIKFVIDSG 625 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEP 350 ++ ++P+ G+ L VSQA QR+GRAGR PGI L + + P Sbjct: 626 FCKLKVYNPKVGMDSLQITPVSQAGANQRSGRAGRTAPGICYRLYTERTYLNDLFENNVP 685 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQ 409 EI++++L +++ L + ++D P N+L+A L +LG ++ L+ G+ Sbjct: 686 EIMRTNLCNVVLLLKSLKVKRLTEFDFIDPPHAENILSAMLQLWILGGIDEFGELTDIGR 745 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-----GNSDLGVAFSRNQPA 464 K+ +P L+ M+++ +++ + + +++ P ++ A + + Sbjct: 746 KLVHYPLEPPLSKMMIAGESERCMSEILTVVSVMSAPNVFVVENETDAQRESADNATREK 805 Query: 465 WQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + L LNV + + RR + R QL Sbjct: 806 FMVPESDHLTLLNVYKQWCANGRSDSWCLQYRLQPKSLRRAAEVRQQL 853 >UniRef50_Q47AH6 ATP-dependent helicase HrpA n=7 Tax=Betaproteobacteria RepID=Q47AH6_DECAR Length = 1329 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 189/696 (27%), Positives = 301/696 (43%), Gaps = 82/696 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV ++ + V++ TG+GK+T LP L G G I +PRRLA Sbjct: 83 TDLPVNERRADIAELIANNQVVIVCGETGSGKTTQLPKICLDLGIGARGLIGHTQPRRLA 142 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA RLA+ L + G VG ++R + + ++++T+G+L Q DP L+ + Sbjct: 143 ARSVATRLAQELKTQVGAGVGVKIRFHDKSTSESWVKLMTDGILLAESQSDPYLNAYEAI 202 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVIS 176 I+DE HERSL D L L + R DLKL+I SAT+D +R Q APV+ Sbjct: 203 IIDEAHERSLNIDFLLGYLKQLLPK-RPDLKLIITSATIDAERFSQHFSAHGKSAPVIEV 261 Query: 177 EGRSFPVERRYLP------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 GR FPVE RY P + DA+ A E+ R SG +L+FLPG EI+ E Sbjct: 262 SGRLFPVEVRYRPVVDIDKKDDERDLYDAIVDAADELSRLGSGDILVFLPGEREIREAAE 321 Query: 231 QLASRI--------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 L + PL+ LS DQ + P+ G R++VLATN+AETSLT+ Sbjct: 322 ALRKHALARPGLSSAHAPEILPLFSRLSAGDQDRIFKPS-GGQRRIVLATNVAETSLTVP 380 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GIR V+D RV R+ R + +L + +SQA+ QRAGR GR+ G+ + L + Sbjct: 381 GIRYVIDTGLARVKRYSYRNKVEQLQVEPISQAAARQRAGRCGRVAAGVCVRLYDEADFN 440 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE 402 A ++PEIL+S L+G+++ + +D +++ PP + LLQ LG L+ + Sbjct: 441 ARAPFTDPEILRSSLAGVILRMKSLKLTDVESFPFIEPPPAKAISDGYALLQELGGLDDD 500 Query: 403 -RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSR 460 RL+ G +A L DPR+ MLV+A++ IAA L + PR + A Sbjct: 501 NRLTKVGDALAKLPLDPRIGRMLVAARDLGCLKEVLIIAAGLSTQDPRERPQERQQAADE 560 Query: 461 NQPAWQQRSQQLLKRLNVRG---------------------------------------- 480 + + L + + G Sbjct: 561 KHKQFADEKSEFLSWVKLWGWFQNVVEHKKSNKQLIDNCHAHFLSYLRLREWREVHGQLH 620 Query: 481 ------GEADSSLIAPL------LAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSR 528 G ++ L L I + + G Y A G+ ++ + L + Sbjct: 621 AMVTELGWKENDLPGTFDAIHQALLTGLLGNIGCKSDESGYYLGARGIRYLIHPSSPLQK 680 Query: 529 --HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAW 585 +W++A + + + ++ D + + L+++ W+ + W Sbjct: 681 KAGKWIMAAEITETTRLFG---RCVARIEADWIEKVGAHLIKRQYFDPHWEKKSMQVAGW 737 Query: 586 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 R + + + + +A +GL Sbjct: 738 ERTTLYGIVINPKRRIHYGPLAPAEA-REIFIRQGL 772 >UniRef50_A2EN72 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2EN72_TRIVA Length = 890 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 137/495 (27%), Positives = 238/495 (48%), Gaps = 12/495 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LP+ ++L + V++ TG+GK+T L G G+I+ +PRR+A Sbjct: 187 AKLPIMDFREKILKVISENSVVIIVGETGSGKTTQLTQFFYEDGYGKFGQIVCTQPRRVA 246 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A ++A+R+A+ + + G VGY +R + + T ++ +T+G+L R + +L ++ Sbjct: 247 ACSIAKRVADEMGVELGGLVGYAIRFEEALSDKTIIKYMTDGILLRESLNEDDLYKYSVI 306 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ +L + R DLK+++ SAT+D + + AP+ +GR+ Sbjct: 307 IMDEAHERALNTDVLFGVLKKIL-SRRSDLKVIVTSATMDASKFSKYFGGAPIFHIQGRT 365 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---- 236 + VE +L +AV A + L++ G +L+F+ G +++ + + + Sbjct: 366 YDVEPFFLRSNPQDYVYEAVRQACSIHLKESPGDILIFMTGQDDVECTCQLIREHLAKIE 425 Query: 237 -GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++ + P+Y L + Q K +RK V+ATNIAETSLTI+GIR V+D + Sbjct: 426 NAPEMAVFPIYSQLPVEQQAKVFENLK--IRKCVVATNIAETSLTIDGIRYVIDSGFCKQ 483 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 + + GL L+ Q +SQA+ TQR GRAGR G L + + PE+ + Sbjct: 484 KSYSSKAGLDTLLVQPISQAAATQRMGRAGRTSEGKCWRLFTETSFKYEMLPMTIPEVQR 543 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 ++L+ +++ L G D ++D PP+ N L A L L AL+ E +L+ G+ M Sbjct: 544 TNLANVILLLKSLGFDDVLSFDFMDPPPLDNFLHAMNQLWSLRALDNEGKLTKLGKDMVQ 603 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 DP L+ ML+ I ++L + + Sbjct: 604 FPLDPTLSKMLLVGNKFGCLEEILTIVSMLSVSEIFYKPHGREEEADAMRMKFLVPESDH 663 Query: 473 LKRLNVRGGEADSSL 487 L LNV ++ L Sbjct: 664 LTMLNVFNLWFNAGL 678 >UniRef50_B5JXZ9 ATP-dependent helicase HrpA n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JXZ9_9GAMM Length = 1300 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 190/755 (25%), Positives = 334/755 (44%), Gaps = 85/755 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LP+ A ++L A++ V+L TG+GK+T LP L G+ G I +PRRLA Sbjct: 69 AQLPIVAARADILKAIEEHQVVVLCGETGSGKTTQLPKLCLELGRGVAGYIGHTQPRRLA 128 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE L + G VG+++R + V + ++++T+G+L Q D L + Sbjct: 129 ARSVAARIAEELKTELGQGVGFKVRFADKVSELSHIKLMTDGILLAETQGDRFLERYDTL 188 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L + + R DLK++I SAT+D +R + +AP++ GR+ Sbjct: 189 IIDEAHERSLNIDFLLGYIKRILP-RRPDLKVIITSATIDPERFSKHFNDAPILNVSGRT 247 Query: 181 FPVERRYLPLPAHQRFDDAV-------AVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 +PVE Y PL D+ A E ++ G +L+FLPG +I+ Q L Sbjct: 248 YPVEVEYRPLVDLDSDDERETSLRQGVADCVDEAMQNGPGDILVFLPGERDIRDTQRFLE 307 Query: 234 SRI----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 G + PLYG LS +Q++ + G R++VL+TN+AETS+T+ GI V+D Sbjct: 308 KHFASRRGQSADILPLYGRLSNAEQQRIFKSS--GPRRIVLSTNVAETSVTVPGIVFVID 365 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 RV+R+ R+ + RL + +SQAS QR GR GR+ PGI L +++ ++ Sbjct: 366 TGLARVSRYSYRSKVQRLPIEAISQASANQRKGRCGRVAPGICYRLYSEDDFNARPEFTD 425 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE----RLS 405 PEIL+++L+ +++++ + Q +++ P + +LL LGA+ + +L+ Sbjct: 426 PEILRTNLAEVILQMESLRLGEIEQFPFIEAPDSRLISDGYKLLFELGAMSRQGKRHKLT 485 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPA 464 + GQKM+ L DPRLA ML+++ ++ + A L + PR D A Sbjct: 486 SLGQKMSRLPIDPRLARMLMASDRENCLEETLTLVAALSIQDPRERPHDHRQAADEAHQQ 545 Query: 465 WQQRSQQLLKRLNV------RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA----- 513 W+ + LN+ R + + F + R +D R QL+ Sbjct: 546 WRDERSDFIALLNLWRHFNERSRALSQNQLRKWCRENFLSWVRMREWRDTRRQLSDFAKQ 605 Query: 514 --------------------NG-------------------MGAMLDANDALSRH-EWLI 533 +G L + + +W++ Sbjct: 606 LKLKRNSIEPVYDELHRALLSGLLGNIGLKEDKSEYLGPRNRRFHLFPGSGVRKKVQWVM 665 Query: 534 APLLLQGSASPDARILL--ALLVDIDELVQRCPQLVQQSD-TVEWDDAQGTLKAWRRLQI 590 A + + S R+ + + L Q L+++ + G + A+ + + Sbjct: 666 AAEIFETS-----RVFAHTVAEIKPEWLEQYASHLLKKRQFEPHFHRKSGQVMAYEQASL 720 Query: 591 GQLTVKVQ---PLAKPSEDELHQA-MLNGIRDKGLSVL-NWTAEAEQLRLRLLCAAKWLP 645 L ++ + ++ + E Q + + + D L + QL + Sbjct: 721 YGLVIRARKRVNYSRINPVESRQIFVRDALADMQLQSEAPFMRHNRQLLEDIAELEAKGR 780 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKS 680 D +D++ +A E + + + + Sbjct: 781 RRDLL-LDEQPRIAFFEQRVPQDVGDAATFDRWRK 814 >UniRef50_A5DZ49 Pre-mRNA splicing factor ATP-dependent RNA helicase PRP2 n=1 Tax=Lodderomyces elongisporus RepID=A5DZ49_LODEL Length = 900 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 158/531 (29%), Positives = 253/531 (47%), Gaps = 19/531 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL---AHPGINGKIILLEPRRL 59 SLPV E L + +++ TG+GK+T LP L I +PRR+ Sbjct: 322 SLPVYKFRDEFLRLISENQVLIVVGETGSGKTTQLPQYLYQAGYSQNDTKIIGCTQPRRV 381 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VAQR+A+ + E G+ VGY +R + NTR++ +T+G+L R +PE+ G Sbjct: 382 AATSVAQRVAQEMQEPLGEKVGYTVRFDDKSSRNTRIKYLTDGMLLREFLNNPEMDSYGA 441 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER+L ++ L+LL D+ R DLK++I SAT++ + + AP++ GR Sbjct: 442 IMIDEAHERTLSTEILLSLLKDLTNSTRSDLKIIIASATINATKFSEFFNNAPILNIPGR 501 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPV+ Y P + L Q G +L+FL G EI+ +++Q+ I Sbjct: 502 RFPVKIHYTKQPEANYLQAVMTTIFQIHLTQPLPGDILVFLTGQEEIESLEQQMQEAIAK 561 Query: 239 ---------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +++C +Y L Q++ P P RK+VLATNIAETS+TI G+ V+D Sbjct: 562 LGDQLKEQGKIMVCSIYANLPNEQQQRIFEPTPPFTRKLVLATNIAETSITIPGVSYVID 621 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQS 348 + F+P TG+ L+ S+A+ QRAGRAGR+ PG + K + Sbjct: 622 PGYVKQTEFNPHTGMESLLVVPCSKANCDQRAGRAGRIGPGKCFRIFTKHSFDHEMEMNT 681 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQ 407 +PEI + +L+ +++ LL G +D + +LD P +++ + LL LG L L+ Sbjct: 682 KPEIERINLNSVVLLLLSLGINDLIKFPFLDPPNRQSIIKSLSLLYQLGGLNSRGELTRT 741 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVA---FSRNQPA 464 G KM+ DP A ++S++ I A+L E + + + Sbjct: 742 GMKMSEFPLDPTYAKCILSSERFGITKEICIIIAMLTESSNLYYIPKKLDKEMVKKRHEQ 801 Query: 465 WQQRSQQLLKRLNVRGGEADS-SLIAPLLAGAFADRIARRRGQDGRYQLAN 514 + + L LNV A + F +R +D QL Sbjct: 802 FVDKQGDHLTLLNVYKQWAGTGGYSNQWCQDYFIQYKTMKRVRDIYKQLIG 852 >UniRef50_B8KHJ8 ATP-dependent helicase HrpA n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KHJ8_9GAMM Length = 1254 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 213/781 (27%), Positives = 335/781 (42%), Gaps = 81/781 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 S LPVA E+ AL V+++ TG+GK+T LP L G +I +PRRLA Sbjct: 22 SDLPVAEHRQEIADALREHQVVIVAGETGSGKTTQLPKICLELGRGRLQRIGHTQPRRLA 81 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VAQR+AE + + G+ VGY++R Q +G T ++++T+G+L +QRD +L + Sbjct: 82 ARTVAQRIAEEVGQPLGELVGYQVRFQEILGDRTAVKLMTDGILLSEMQRDRDLRQYDTL 141 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK+L+ SAT+D R + APV+ GRS Sbjct: 142 IIDEAHERSLNIDFILGYLKRLLP-RRPDLKVLVTSATIDVGRFSEHFNGAPVIEVSGRS 200 Query: 181 FPVERRYLPLPAH--QRFDDAVAVATAEML---RQESGSLLLFLPGVGEIQRVQEQLASR 235 +PV YLP + + VA E+ G +L+FL G +I+ V QL Sbjct: 201 YPVTTHYLPRDSSNSEDLLRQVASVVKEVQAGIHGTPGDMLVFLSGERDIRDVARQLRGA 260 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 G DVL PLY LS +Q + +VVL+TN+AETS+T+ GIR V+D + R+ Sbjct: 261 AGLDVL--PLYARLSQGEQARVFGRGSARGLRVVLSTNVAETSVTVPGIRFVIDPGEARI 318 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +R+ RT + RL + VS+AS QR GR GR+ PGI L L +E ++PEI +S Sbjct: 319 SRYSYRTRVQRLPIEPVSRASADQRRGRCGRVGPGICLRLYTEEDYLNRPQFTDPEIKRS 378 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 +L+ +++++LQ G D + +L+ P + RLL LGA+ E+L+ G++MAA Sbjct: 379 NLAAVVLQMLQLGLGDITKFPFLEPPDSRLIRDGYRLLDELGAVNQREQLTRLGRRMAAF 438 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 DP L+ M+++A+ IA+ L + PR +D ++ + + Sbjct: 439 PIDPSLSRMVLAAQEFSVLPEMLVIASALSIQDPRERPADRQAQADQSHARFADPRSDFM 498 Query: 474 KRLNVR------GGEADSSLIAPLLAGAFADRIARR------------------------ 503 LN+ + + L + + R Sbjct: 499 SLLNLWRYYEEQRQTLSENKLRKLCKREYLSWLRMREWRDVHRQISIACRSQGLKPALEL 558 Query: 504 -----------------------RGQDGRYQLANGMGAMLDANDALSRHE--WLIAPLLL 538 + + Y L + R WL+A ++ Sbjct: 559 APETDYAGVHRALLSGLLGNIAQQDERREYLATRNRRLQLFPGSVVYRKPPKWLVAGEIV 618 Query: 539 QGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKV 597 + A ++ L+Q P L++ W QG + AWR+ + LT+ Sbjct: 619 ETQR---VYARTAASIEPQWLMQVNPALLKHQYYEPRWQREQGRVVAWRKTTLFGLTISD 675 Query: 598 QPL---AKPSEDELHQAML--NGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAV 652 + AK + ++ I + + +L+ + D V Sbjct: 676 RVAVHYAKIDPALCRELLIREALIAGRWTKPPAFLKHNLRLQREVEDLESRARRRDLL-V 734 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLKSLD-----IYQALRGLLDWGMQQRLDSELPAHY 707 D+++L + L H T SL D + R L L P Sbjct: 735 DEDTLFQFYDELLPTHATNTTSLVAWIKEDSNRGTALKLRRDQLLTRDPGALTDAFPDRL 794 Query: 708 T 708 Sbjct: 795 E 795 >UniRef50_A9GK92 ATP-dependent helicase HrpA n=2 Tax=Myxococcales RepID=A9GK92_SORC5 Length = 1263 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 192/703 (27%), Positives = 312/703 (44%), Gaps = 70/703 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LP++A + ++ A++ V+++ TG+GK+T LP LA G++ +I + +PRR+AA Sbjct: 42 ELPISARVRDIARAIEAHQVVIVAGETGSGKTTQLPKICLAMGRGLSARIGVTQPRRIAA 101 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA R+A+ L + G VGY++R + P T ++ +T+G++ IQ DP LSG +I Sbjct: 102 TSVAARVAKELGVELGKEVGYKIRFSDRTSPATYVKYMTDGIVLAEIQGDPRLSGYDTLI 161 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DL++++ SATL+ DR APV+ GR++ Sbjct: 162 IDEAHERSLNIDFLLGYLKRLLPK-RPDLRVIVSSATLETDRFAAYFGGAPVIEVSGRTY 220 Query: 182 PVERRYL-PLPAHQRFDDAVAVATAEMLR-QESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE + P DAVA E+ G +L+FLPG EI +L Sbjct: 221 PVEVIHRRPESGEAEVADAVAATVEEITSIDPRGDILVFLPGEREIHDTMAELTRHGLPH 280 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 L PLYG L +DQ++ P R++VLATN+AETSLTI GI V+D RV R+ Sbjct: 281 TTLLPLYGRLPQSDQQRVFQSLPG--RRIVLATNVAETSLTIPGIVYVIDSGLARVNRYS 338 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 PRTG+T+L + +S+AS QR GRAGR++ G+ L ++ A ++PEIL+ LSG Sbjct: 339 PRTGVTQLQIEPISRASADQRKGRAGRVQSGVCFRLYDEQDDRARPAYTDPEILRVGLSG 398 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDP 418 +++++ G +LD P + R+L+ LGAL+ L+ G+K+A L DP Sbjct: 399 VILQMKALGLGAIEDFPFLDAPSKRAVDEGYRVLEELGALDDAGELTDIGRKLARLPLDP 458 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLN 477 RL M++ +++ A IAA L + PR ++ + + L Sbjct: 459 RLGRMVLGGESEGALAEVLIIAAALGVQDPRERPLAAQKQADDAHRKFKDEASDFVGLLK 518 Query: 478 VRGGEADS---------------------------------------------------S 486 + D+ Sbjct: 519 LWSFYQDAQGRLTQNQLRKACRDHFVSYLRMREWADVHRQISRITKEMGFSPNDAPAKGD 578 Query: 487 LIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE--WLIAPLLLQGSASP 544 I L RI ++ Y A L + L++ W++A L++ S Sbjct: 579 AIHRALLPGLLSRIGMWNQENKVYLGARQTRFQLHPSSGLAKKPPAWIMAAELVETS--- 635 Query: 545 DARILLALLVDIDELVQRCPQLVQQSDT-VEWDDAQGTLKAWRRLQIGQLTV---KVQPL 600 +A +D + L ++S + W + A ++ + L + + Sbjct: 636 QLFARMAAALDPAWIEAAAGPLCKRSHSDPHWAAKPAAVMAREQVTLYGLPIARDRRVDF 695 Query: 601 AKPSEDELHQAML--NGIRDKGLSVLNWTAEAEQLRLRLLCAA 641 Q L +R + + + +L + Sbjct: 696 GAIDPKSARQIFLVHALVRQEYATRAPFMEANRRLFEEVSRLR 738 >UniRef50_B0ECZ2 ATP-dependent RNA helicase, putative n=2 Tax=Entamoeba RepID=B0ECZ2_ENTDI Length = 664 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 163/537 (30%), Positives = 269/537 (50%), Gaps = 25/537 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAAR 62 LP+ ++++ L +++ TG GK+T LP +L GK I + +PRR+AA Sbjct: 26 LPIRQSKDDIISELKKHQTMVVVGETGCGKTTQLPQFILESNICEGKKIGVTQPRRVAAI 85 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +A+R+++ + + G TVGYR+R + + +T++E +T+G+L R DP+L G+++L Sbjct: 86 TLAERVSKEVGCRVGTTVGYRVRFEEKMSKDTKIEYLTDGMLLRTALLDPDLKSYGVIVL 145 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER++ D+ + LL + + R DLK+++MSATLD+ P + GR P Sbjct: 146 DEAHERTVHTDILIGLLRGILR-RRKDLKVVVMSATLDSQLFSNFFAG-PTLTIAGRQHP 203 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS---- 238 +E +L D ++ + G +L+FLPG I+ V+ L R+ + Sbjct: 204 IELFHLTESEDSPVDASITAILQLHMSAGPGDILVFLPGQDAIESVEAALLERMKNAPAT 263 Query: 239 --DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + + PLY AL Q P P RK+VL+TNIAETS+TI G+R V+D + Sbjct: 264 VKPIQVLPLYAALPPEQQLLIFSPPPPDTRKIVLSTNIAETSVTIPGMRFVIDTGLVKEK 323 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 + + G+ L T VS+A QRAGRAGR PG L ++ +A + PEI + Sbjct: 324 EYQSKIGMEALKTTWVSKAQAMQRAGRAGREAPGQCYRLYTSKRFSEFSATTTPEIQRCS 383 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGN 416 L G++++L D Q +L P ++ A+ L LGALE R++ G+ M AL Sbjct: 384 LDGVVLQLKALNVIDVTQFDFLQPPSGDSISRAEINLSKLGALENGRITPLGKVMVALPV 443 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL 476 P A +++A + A I A+L F + P+ ++++QQ ++ Sbjct: 444 APPFARTIIAAAQSNCLAHILCIVAMLAVD---------TQFFVSAPSIREKAQQSMRMY 494 Query: 477 NVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLI 533 + G D ++ L + RR+ R+ + N + N ALS H+ L+ Sbjct: 495 SSDNG--DHFMLLSLYLAFKKVGVNRRK----RWCVENALNYK-ALNTALSTHDQLV 544 >UniRef50_Q6FTI2 Strain CBS138 chromosome G complete sequence n=1 Tax=Candida glabrata RepID=Q6FTI2_CANGA Length = 1057 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 160/534 (29%), Positives = 259/534 (48%), Gaps = 23/534 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 SLP+ +L + +L TG+GK+T L L G I +PRR+A Sbjct: 340 SLPIYKARANVLQMIRDNQVSILIGETGSGKTTQLAQYLYEDGYTRDGGLIACTQPRRVA 399 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A+ +++K GD VGY +R ++ GP+T+++ +T+G+L R D L ++ Sbjct: 400 AMSVAKRVAQEMDKKVGDLVGYSIRFEDKTGPSTKIKFMTDGILLRETLIDENLEKYKVI 459 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D+ L LL ++ + R D+K++I SATLD ++ Q P G++ Sbjct: 460 IIDEAHERSLNTDVLLGLLKNLVKRRR-DIKIIITSATLDANKFSQFFGGLPQYKVPGKT 518 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEM--LRQESGSLLLFLPGVGEIQRVQEQLASRI-- 236 +PV+ + + AV+ A +SG +L+F+ G +I E + RI Sbjct: 519 YPVQVMHTSGTVPDYVEAAVSQAVRIHLTTAIQSGDILIFMTGQEDILCCIELIKERIVD 578 Query: 237 -------------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEG 283 DV L P+Y AL Q + L G RK+V++TNIAETSLTI G Sbjct: 579 LYGKKYGINTFDKVDDVELFPIYSALPAEIQNRIFLDLDIGKRKIVVSTNIAETSLTISG 638 Query: 284 IRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE- 342 IR V+DC ++ ++P+ GL L +S A+ QR+GRAGR PGI+ L ++E Sbjct: 639 IRYVIDCGYSKLKVYNPKIGLDSLAIAPISIANANQRSGRAGRTAPGIAYRLYSEETELT 698 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EG 401 Q+ PEI +++LS +++ L G + +LD P + L+A+ L LG L + Sbjct: 699 DMYQQTIPEIKRTNLSNIVLTLKSLGIKNVVDFPFLDPPSIETLMASMYELWFLGVLNDD 758 Query: 402 ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSR 460 L+A G+KM P L+ +L+ + + + I A+L P + Sbjct: 759 GELNALGKKMVNFPLQPTLSKVLIQSISFGCSKEVVTIVAMLSVPQVFERPKERQKEADE 818 Query: 461 NQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 + + L +NV + F + R ++ R Q+ + Sbjct: 819 ARKRFFISESDHLTLMNVYDQWKSAKYSPKWCKKNFVLYKSLIRAREIRTQIVS 872 >UniRef50_C7RBD8 ATP-dependent helicase HrpA n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBD8_KANKD Length = 1311 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 153/486 (31%), Positives = 258/486 (53%), Gaps = 11/486 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAA 61 +LPV ++ A++ V+++ TG+GK+T LP L G+ GKI +PRR+AA Sbjct: 93 ALPVCQARDDVRKAIEENQVVVIAGETGSGKTTQLPKICLQLGLGVYGKIGHTQPRRVAA 152 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE L + G+ VGY +R + T + V+T+G+L I DP L +I Sbjct: 153 TSVARRIAEELKSELGELVGYSIRFNDQSSAVTPVRVMTDGILLNEITHDPLLRQYDTII 212 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVISE 177 +DE HERSL D L + ++ R DLK++I SAT+D +R + AP++ Sbjct: 213 IDEAHERSLNIDFLLGYIRNILPK-RPDLKVIITSATIDVERFSKHFAIDGKPAPILEIS 271 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAV--ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GR++PV+ Y P + A E++ G +L+FL G EI+ + L Sbjct: 272 GRTYPVDVWYRPDDEENPSPQVERIGHALDELMSFAPGDILIFLSGEAEIRETAKFLRKE 331 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + PLY LS+ +Q K P+ G R+++L+TN+AETS+T+ GIR V+D R+ Sbjct: 332 RFEGCEVLPLYARLSMREQEKIFHPS-GGKRRIILSTNVAETSVTVPGIRFVIDPGFARI 390 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +R+ R + RL +++SQAS QR GR GR+ G+ + L +E ++ EIL++ Sbjct: 391 SRYSVRNKIQRLPIEKISQASANQRKGRCGRVADGVCIRLYEEEDFLNRPEFTDAEILRT 450 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAAL 414 +L+ +++++ Q G D ++D+P + LL L A++ ++L+ G+KMA L Sbjct: 451 NLAAVILQMKQLGLGDIEAFPFIDEPAAKQISDGLNLLSELQAVDGKKQLTNIGRKMARL 510 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 +PRLA +L++A+++ A +AA L PR + + ++ + Sbjct: 511 PIEPRLARILLAAEDESCIREALILAAFLSVKDPREWPFEKRELAQQKHAKYKHPQSDFI 570 Query: 474 KRLNVR 479 +N+ Sbjct: 571 AIINLW 576 >UniRef50_A1U107 ATP-dependent helicase HrpA n=4 Tax=Gammaproteobacteria RepID=A1U107_MARAV Length = 1312 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 202/802 (25%), Positives = 346/802 (43%), Gaps = 95/802 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 + LPV+ + ++ A++ V+++ TG+GK+T +P L GI G I +PRR+A Sbjct: 85 AGLPVSDRVEDISDAINNHQVVIIAGETGSGKTTQIPKICLNLGRGIRGIIGHTQPRRIA 144 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+V+ R+AE L E G +GY++R + ++R++V+T+G+L +Q D L + Sbjct: 145 ARSVSSRIAEELGETVGQQIGYQVRFTDNTSESSRVKVMTDGILLAEVQHDRFLDRYDTL 204 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT++ +R + EAPV+ GR+ Sbjct: 205 IIDEAHERSLNIDFLLGYLKQLLPK-RPDLKVIITSATIEVERFSEFFNEAPVIEVSGRT 263 Query: 181 FPVERRYLPLPAHQR-----FDDAVAVATAEML------RQESGSLLLFLPGVGEIQRVQ 229 FPV+ RY PL + + D V A E+ +Q G +L+FLPG EI+ + Sbjct: 264 FPVDIRYRPLVGDEDDRDQGWTDGVLSALDEIEQHERQEKQPPGDVLVFLPGEREIRALS 323 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 + L + PLY LS +Q + R++VL+TN+AETSLT+ GIR V+D Sbjct: 324 KVLRHADLRHTEVLPLYSRLSNQEQNRVFQGHKG--RRIVLSTNVAETSLTVPGIRYVID 381 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++R+ R+ + RL + +SQAS QRAGR GR+ PGI L + ++ Sbjct: 382 TGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGRVAPGICFRLYDETDFLNRPEYTD 441 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PEIL+++L+ +++++ G + +L+ P + +LL+ L A++ + R++ G Sbjct: 442 PEILRTNLASVILQMATSGLGEIRHFPFLEAPDRRQVNDGYKLLEELSAVDDKRRVTRLG 501 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQ 467 + MA L DPRLA MLV++ A + A L + PR D A + + Sbjct: 502 RTMARLPLDPRLARMLVTSAEQGSLAEVLIVIAGLSVQDPRERPQDKQQAADQAHAPFND 561 Query: 468 RSQQLLKRLNVRG------GEADSSLIAPLLAGAFADRIARR------------------ 503 + LN+ E + + L F + R Sbjct: 562 KESDFATLLNIWNWFEEQRQELSQNQLKKLCQKTFLSWMRMREWRDIHRQLTLICREQKL 621 Query: 504 --------------------------RGQDGRYQLANGMGAMLDANDALSRHE--WLIAP 535 + + Y M+ + + W++A Sbjct: 622 TLNSQPANYDAVHKAILGGLLGQVAVKVEKREYLATRNRKVMIFPGSKVGKTAPKWIVAA 681 Query: 536 LLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQL- 593 +++ S + + + + +V+ W+ + + + ++ + L Sbjct: 682 EIVETSK---VFARMVAAIQPEWVEPLAGHVVKHHYFEPHWEQKRAQVMGYEKVTLYGLD 738 Query: 594 --TVKVQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 + P AK E + +G S + A ++ + K D Sbjct: 739 VVPKRRIPYAKVDPAECRNLFIRRALVEGDFQSRAPFIARNREMLDTVENLEKKTRRRDL 798 Query: 650 PAVDDESLLAALETWLLPHMTGVH---------SLRGLKSLDIYQ--ALRGLLDWGMQQR 698 VDDE L+A + L + S LK L++ + L+ LD Q+ Sbjct: 799 L-VDDEVLVAFYDQRLPSDIVSGRHFESWWKGLSAEELKKLELTETDVLQRPLDETSAQQ 857 Query: 699 LDSELPAHYTVPTGSRIAIRYH 720 P + G + + Y Sbjct: 858 ----YPDYLEW-EGVKYPLSYE 874 >UniRef50_Q2LSZ0 ATP-dependent helicase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSZ0_SYNAS Length = 1282 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 204/818 (24%), Positives = 347/818 (42%), Gaps = 103/818 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 + LP+ A E++ A+ V+++ TG+GK+T LP L A GING I +PRR+A Sbjct: 34 ADLPITARRREIVQAIARHRVVVITGETGSGKTTQLPKMCLEAGRGINGIIGCTQPRRVA 93 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A VA+R+AE L + G VGYR+R ++ GP+ + ++T+G+L Q DP L + Sbjct: 94 AVTVAERIAEELGQTVGQAVGYRIRFEDRSGPSPYIRIMTDGILLMETQSDPLLHAYDTI 153 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D L L + + R+DLK++I SAT+D ++ APV+ GR Sbjct: 154 IVDEAHERNLNIDFLLGYLKTLLRK-RNDLKIIITSATIDTEKFAAAFDGAPVIEVTGRV 212 Query: 181 FPVERRYLPLPAHQRFDD-----AVAVATAEML--RQESGSLLLFLPGVGEIQRVQEQLA 233 +PVE Y P+ ++ A A E+ R + G +L+F+P +I+ E L Sbjct: 213 YPVEVLYRPIEQGDGDEEITHVEAAVRAVEELRARRSDRGDILIFMPTEQDIRDTCELLE 272 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R ++++ PL+ LS +QR+ +K+++ATNIAETSLTI GIR V+D Sbjct: 273 GRRYENLVILPLFARLSWAEQRRIFSATTA--QKIIVATNIAETSLTIPGIRYVIDTGYA 330 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 RV++++PRT L + +S++S QR GR GR++ G+ + L +E S PEIL Sbjct: 331 RVSQYNPRTRTNSLPVRAISRSSADQRKGRCGRVQNGVCIRLYEEEDYLNRPQFSVPEIL 390 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE----------- 402 +S+L+ +++ +L+ PA ++D P ++ +L+ LGA+ E Sbjct: 391 RSNLAEVILRMLKLRLGHPAAFPFIDAPNPKSVRDGFEILKELGAISIEKNRNSREEGNG 450 Query: 403 ----RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL-EEPPRMGNSDLGVA 457 RL+ +G++MA L DPR+A +L+ A+ + A IA+ L + PR D Sbjct: 451 EADVRLTERGRRMARLPMDPRIARILLEAEKEGCVEEATIIASGLCIQDPRERPVDEEGL 510 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEADSSL-------IAPLLAGAFADRIARRRGQDGRY 510 + + L L + + + + R +D Sbjct: 511 ADAAHRVFLDPTSDFLTLLRIWDKYQRAQETLKSQGKMRKYCRVNYLSWRRMREWKDIYE 570 Query: 511 QLANGMGAMLDANDALSRHEWLIAPLLLQGSA---------------SPDARILLA---- 551 Q+ A+ ++S+ L A +A + I A Sbjct: 571 QIRTIRREEEKADRSISKK--LAAAPEDLNAAIHRSILSGYLSGIAVKKEKNIYSATRGR 628 Query: 552 ----------------------------------LLVDIDELVQRCPQLVQQS-DTVEWD 576 + + + + L + W+ Sbjct: 629 EVMLFPGSGLFNSGGNWIVAAEMVETSRLFARIAANISSEWIEELAGNLCTSTYSEPHWE 688 Query: 577 DAQGTLKAWRRLQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAE 631 + + A++++ + L + + A +E + + +G + L + Sbjct: 689 KRREEVVAYQQVSLFGLVIVPQRKVSYAHIDPEEASRIFVRSALVEGELKTPLPFLLYNR 748 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 QL ++ + D + DES+L LP + V +L+ A + Sbjct: 749 QLVAEVIGMEDKIRRRDL--LQDESVLNDFYASRLPGICNVRTLKRKIREQGGDAFLRMT 806 Query: 692 DWGMQQRL-DS----ELPAHYTVPTGSRIAIRYHEDNP 724 + RL D P TV G Y D Sbjct: 807 PADVLTRLPDEEELSLFPDEVTV-GGRSYRCVYRFDPG 843 >UniRef50_B3L2J4 Atp-dependant rna helicase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L2J4_PLAKH Length = 857 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 160/530 (30%), Positives = 261/530 (49%), Gaps = 22/530 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAAR 62 LP + L +++ TG+GK+T + +L K I + +PRR+AA Sbjct: 206 LPAWSAKKNFLKLFKKNDVLIIVGDTGSGKTTQISQFVLESKFAEKKSIAVTQPRRVAAM 265 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R++E L+ + G VGY +R ++ T ++ +T+G+L R DP L +IL Sbjct: 266 SVAARVSEELDVELGTYVGYTIRFEDRSSTKTVIKYLTDGMLLRESMYDPLLKRYNTIIL 325 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER+L D+ ++ ++Q+ R+DLKL++MSATLD + Q+ + ++ GR +P Sbjct: 326 DEAHERTLATDILFGVIKNIQEQ-RNDLKLIVMSATLDAGKFQKFFNGSQILNIPGRLYP 384 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD--- 239 VE Y + + +E G +L+FL G EI+ ++++ + + Sbjct: 385 VEIFYTLQAEKDYIRVVIRTVYDIHVNEEEGDILVFLTGEEEIEMTKKEIEKLVSKNENA 444 Query: 240 --VLLCPLYGALSLNDQRKAILPAPQGM-------RKVVLATNIAETSLTIEGIRLVVDC 290 +++ PLY +L Q+K PAP+ RK +L+TNIAETSLTIEGI V+D Sbjct: 445 GQLVVLPLYSSLPSTQQQKIFEPAPKPRFKGDKMGRKCILSTNIAETSLTIEGIVYVIDP 504 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSE 349 + ++PR + L+ +S+AS QRAGRAGR +PG L ++ E+ Q+ Sbjct: 505 GFSKQKVYNPRARVESLLIAPISKASAQQRAGRAGRTKPGKCFRLYTEKCFEQTLPEQTY 564 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PEIL+S+L +++ L + G D ++D P L+ A L LGAL+ E L+ +G Sbjct: 565 PEILRSNLGSVVLNLKKLGIDDLVHFDFMDPPAPETLMRALEQLNYLGALDDEGELTQKG 624 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQ 467 M+ DP+LA +L+ + N ++ IAA+L P + G + + Sbjct: 625 HFMSEFPVDPQLAKVLIESPNYCCSSEILTIAAMLSVPYCFLRPKVKGKEADEMKTRFSH 684 Query: 468 RSQQLLKRLN-----VRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 L +N V D + F + A Q+ R QL Sbjct: 685 LDGDHLTLMNVFHAFVNYSRMDINASKKFCYDYFLNHRAMTSAQNVRNQL 734 >UniRef50_Q9H5Z1 Probable ATP-dependent RNA helicase DHX35 n=44 Tax=cellular organisms RepID=DHX35_HUMAN Length = 703 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 155/533 (29%), Positives = 256/533 (48%), Gaps = 25/533 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKI-ILLEPRRLAA 61 LPV + +L ++ V++ TG GKST +P L G++ + +PRR+AA Sbjct: 54 LPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAA 113 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGP-NTRLEVVTEGVLTRMIQRDPELSGVGLV 120 VA R+AE G VGY +R +C TR++ +T+G+L R + DP L+ ++ Sbjct: 114 VTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVI 173 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---------- 170 +LDE HER+L D+A+ LL +Q+ R DL+L++ SATLD D+ + + Sbjct: 174 MLDEAHERTLYTDIAIGLLKKIQKK-RGDLRLIVASATLDADKFRDFFNQNETSDPARDT 232 Query: 171 APVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 ++ EGR+FPV+ YL P V + G +L FL G E++ V Sbjct: 233 CVILTVEGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDVLAFLTGQEEVETVVS 292 Query: 231 QLASR--------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 L + + + + P+Y L +Q K + +RKV++ATN+AETS+TI Sbjct: 293 MLIEQARALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITIS 352 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GI V+DC ++ ++PRT + L+ VSQAS QRAGR GR G L +E + Sbjct: 353 GIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFD 412 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-G 401 + + PE+ +S+L+ ++++L G + + ++ PP +++ A LL LG L+ Sbjct: 413 KLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKD 472 Query: 402 ERLS-AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFS 459 RL+ G ++A +P A ML+ + N + IAA+++ + + + Sbjct: 473 CRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSHAI 532 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 R + L LN+ + + F + R R QL Sbjct: 533 RVHRKFAVEEGDHLTMLNIYEAFIKHNKDSKWCQEHFLNYKGLVRAATVREQL 585 >UniRef50_D1N0X8 ATP-dependent helicase HrpA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0X8_9BACT Length = 1235 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 210/799 (26%), Positives = 346/799 (43%), Gaps = 88/799 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LP++ + E+ A + +P +++ TG+GK+T LP LA G G+I +PRR+AA Sbjct: 24 ELPISRHVDEIKKAWESSPVIIVGGDTGSGKTTQLPKIALALGYGRRGRIGCTQPRRIAA 83 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +++R+A+ L +PG VGY++R + +T L+ +T+G+L + D L ++I Sbjct: 84 SAMSRRVAQELGCEPGTGVGYQVRFDDRTTKSTVLKFMTDGILLAETRNDRSLRQYEVLI 143 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK+ I SATLD + +APV+ EGR++ Sbjct: 144 IDEAHERSLNIDFLLGYLKNLLPH-RPDLKVAISSATLDTQEFSRFFNDAPVIAIEGRTY 202 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLR-QESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 PVE ++P + +A A + G +L+FLPG EI+ + L R + Sbjct: 203 PVEDVFMPPEYDEELSAQIARAAEFVTSLDPQGDILVFLPGEREIRDATDVLTGRRLRNT 262 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LS DQ+K P G R++VLATN+AETS+TI IR V+D R+ RF+P Sbjct: 263 EVLPLFGRLSAADQQKVFN--PGGQRRIVLATNVAETSVTIPRIRFVIDSGLARIKRFNP 320 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RT + L + +SQAS QR GR GR+ G+ +HL ++E ER+A ++PEI ++ L+G+ Sbjct: 321 RTQIEELQVESISQASARQRRGRCGRIADGVCVHLYSEEDLERSAPYTDPEIKRTGLAGV 380 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 ++++ G +++ PP + R L+ L AL+ RL+ +G K+A L DP Sbjct: 381 ILQMAALGLPRITHFPFINPPPPAAVREGLRTLEDLRALDPAGRLTREGWKLAELPIDPH 440 Query: 420 LAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQR---------- 468 L ML A+ IAA L + P+ + A ++ + Sbjct: 441 LGKMLAFAEKRRVLPELLVIAAYLSIQDPQERPLEKQQAADEAHRRYRDKKSDFVTILNL 500 Query: 469 ---------SQQLLKRLNVRG-----------------------------------GEAD 484 S + L+ R Sbjct: 501 WNAIQQECPSNRQLRVFARRNFYNFNRLLEWRNLAADLADAAADLKWSGAKLPKLLENPP 560 Query: 485 SSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRH----EWLIAPLLLQG 540 + + IAR ++ Y ++ L + EWL++ L++ Sbjct: 561 YDQVHQSILAGIPRHIARYMPEEQHYLGTGARKFLIFPGSGLFKAKPAPEWLMSFALVET 620 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV---K 596 S + D L Q P L + D WD G + A RL G L + + Sbjct: 621 SR---LFARQNAAIRPDYLEQAAPHLCTRIYDQPYWDAESGFVYARERLTFGGLLIHNGR 677 Query: 597 VQPLAKPSEDELHQAMLNGIRDKGLSVLN--WTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 +K E + + G ++ W ++ + L + + +D Sbjct: 678 RVLYSKSHPAEAREIFIREALATGSVIIPKTWIEKSAHVLESLALLEEKV-RRPGTILDP 736 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLD-------IYQALRGLLDWGMQQRLDSELPAHY 707 E+++ T L + V SL+ L D A++ +Q + + P Sbjct: 737 EAVVEHYLTLLPEGIDSVKSLKELIRNDSQDYSITPQDAMQEQF----RQWEEGDYPDAL 792 Query: 708 TVPTGSRIAIRYH-EDNPP 725 +G +RY P Sbjct: 793 AF-SGQSFRLRYSFTPGEP 810 >UniRef50_B9WL64 Pre-mRNA-splicing factor ATP-dependent RNA helicase, putative n=7 Tax=Saccharomycetales RepID=B9WL64_CANDC Length = 1050 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 157/547 (28%), Positives = 249/547 (45%), Gaps = 39/547 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH--------PGINGKIILLE 55 LP AV +LLT + ++ TG+GK+T L L G I + Sbjct: 335 LPAFAVRNDLLTTIRDNQVTIVIGETGSGKTTQLTQFLYEDGFGSNIDKNGEKKIIACTQ 394 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPEL 114 PRR+AA +VA+R++E +N K G+ VGY +R ++ T ++ +TEG+L R I DP L Sbjct: 395 PRRVAAMSVAKRVSEEMNCKLGEEVGYSIRFEDKTNNKKTIIKYMTEGILLREILVDPLL 454 Query: 115 SGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVV 174 +I+DE HERSL D+ L L ++ R DLKL+I SAT++ +R + AP Sbjct: 455 INYSCIIMDEAHERSLNTDILLGLFKNLLSK-RKDLKLIITSATMNANRFTKFFGAAPQF 513 Query: 175 ISEGRSFPVERRYLPLPAHQRFDDAVAVATAEM----------LRQESGSLLLFLPGVGE 224 GR+FPVE + + AV G +L+F+ G + Sbjct: 514 HIPGRTFPVEIFFNRDVNMDYVEMAVKQILTIHLGRWNINATNGNGNDGDILVFMTGQED 573 Query: 225 IQRVQEQLASRI-----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSL 279 I+ + + ++ + + P+Y + + Q+K RKVV+ATNIAETSL Sbjct: 574 IEITCDLIKEKLDLLEDPPPLDIYPIYSTMPQDLQKKIFNKMNLQRRKVVVATNIAETSL 633 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 T++GI+ V+DC +V ++P+ G+ L +S A+ QR+GRAGR GI+ L ++ Sbjct: 634 TVDGIKYVIDCGLVKVKVYNPKLGMDTLQMVPISLANADQRSGRAGRTGAGIAYRLYTEK 693 Query: 340 --QAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLG 397 Q PEI +S+LS +++ L +D +LD PP L + L +G Sbjct: 694 ATDPNNMYIQPIPEIQRSNLSNIMLLLKSLKINDINSFPFLDPPPKDLLNCSLHDLWAIG 753 Query: 398 ALEG-ERLSAQGQKMAALGNDPRLAAMLVSA--KNDDEAATAAKIAAILEEPPRM-GNSD 453 AL+ +L+ GQ M +P LA +++ + + I A+L P + Sbjct: 754 ALDNLGQLTKLGQSMIQFPIEPTLAKLILLSTQSEFHCSEEIITIVAMLSVPNIYNRPKE 813 Query: 454 LGVAFSRNQPAWQQRSQQLLKRLNVRGGE--------ADSSLIAPLLAGAFADRIARRRG 505 + + L LN+ D + I F + R Sbjct: 814 RSNEADMAREKFIISESDHLTLLNIFNQWEINLNKFKGDYNKINNWCNKNFLQLKSLYRV 873 Query: 506 QDGRYQL 512 +D +YQL Sbjct: 874 KDIKYQL 880 >UniRef50_Q9BKQ8 Probable ATP-dependent RNA helicase DHX35 homolog n=5 Tax=Bilateria RepID=DHX35_CAEEL Length = 732 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 149/530 (28%), Positives = 245/530 (46%), Gaps = 21/530 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLAA 61 LP+ +L + +++ TG GKST +P LL +I++ +PRR+A Sbjct: 77 LPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVITQPRRVAV 136 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +A R+AE + G VGY +R + +T+++ +T+G+L R I DP LS +++ Sbjct: 137 VTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVKFMTDGLLLREILADPLLSKYSIIM 196 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----------PEA 171 +DE HERS D+ L LL + Q +R+DL++++ SATLD + + A Sbjct: 197 IDEAHERSCNTDILLGLLRKIIQ-IRNDLRIIVSSATLDAELFKDFFEMNETGNSDKDTA 255 Query: 172 PVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 ++ EGR+ PV + AV + G +L+FL G E++ V E+ Sbjct: 256 GIISVEGRTHPVAVHHTKTSVPDYCQSAVDTVINIHKHENPGDILVFLTGQDEVEDVCEK 315 Query: 232 LASRIGS-----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 286 L G+ + + P YGAL +Q KA P G RKVV+ATNIAE S+TI GI Sbjct: 316 LRELAGNLKNCDRLWVVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICY 375 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 V+D ++ G+ L+ VS+AS QRAGRAGR+ PG L + + ER A Sbjct: 376 VIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRAGRAGRIRPGKCYRLYPESEFERFAE 435 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG--ERL 404 + PEI + ++ +++L G + + +L PP ++ LL LGA++ + Sbjct: 436 GTVPEIQRCQMASTILQLKALGVQNVHRFHYLSPPPSWAMINGLELLYALGAIDETSQLT 495 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQP 463 S G +MA P + L+ + + I A+++ + + + Sbjct: 496 SPLGLQMAEFPLPPMHSKCLLKSAEFGCSTEMVTIVAMMQIQDVFITPYRQRHQADVIRK 555 Query: 464 AWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 + + LNV ++ + F + R + R QL Sbjct: 556 KFAVEEGDHMTMLNVFTKFVENGRSKKWCSDHFVNYRGLMRADNVRSQLV 605 >UniRef50_Q03319 Probable ATP-dependent RNA helicase prh1 n=2 Tax=Schizosaccharomyces RepID=PRH1_SCHPO Length = 719 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 152/521 (29%), Positives = 255/521 (48%), Gaps = 12/521 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 +LP+ L + +++ TG+GKST +P L P G + + +PRR+AA Sbjct: 95 NLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEGCVAITQPRRVAA 154 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 N+A+R+A + G+ VGY +R + TR++ +T+G+L R + DP LS +I Sbjct: 155 VNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLI 214 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER+L D+ L + + + R L+++IMSATL+ +R + A + GR + Sbjct: 215 LDEAHERTLMTDMLLGFVKKIIKK-RPALRVIIMSATLNAERFSEFFDGAEICYISGRQY 273 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS---RIGS 238 PV+ Y P D + + G +L+FL G EI+ ++ + S ++ S Sbjct: 274 PVQIHYTYTPEPDYLDACLRTIFQLHTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPS 333 Query: 239 DVLL---CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++ CPL+ +L Q + LPA RKVVL+TNIAETS+TI GIR V+D ++ Sbjct: 334 NLPQIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKI 393 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +F+ + GL L Q +SQ++ QR+GRAGR G + + ++ ++ PEI + Sbjct: 394 KQFNSKLGLESLTVQPISQSAAMQRSGRAGREAAGQCYRIYTEADFDKLPKETIPEIKRI 453 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 DLS ++ L G +D ++D P LL A L +GAL+ ++ G +M+ + Sbjct: 454 DLSQAVLTLKARGQNDVINFHYMDPPSKEGLLRALEHLYSIGALDDNGHINDLGYQMSLI 513 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 P LA +++A+ + + + + L + + + + + LL Sbjct: 514 PLLPSLARAVLAAREHNCLSEVIDVVSCLSTDSMFLFPQEKRDEAIEARLKFLHSEGDLL 573 Query: 474 KRLNVRGG--EADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 LN E+ + F +R A + D R QL Sbjct: 574 TCLNALRQYLESSHDSRKQWCSQNFINRRALKTILDIRKQL 614 >UniRef50_A4BTJ3 ATP-dependent helicase HrpA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTJ3_9GAMM Length = 1294 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 216/802 (26%), Positives = 356/802 (44%), Gaps = 98/802 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 ++LP+ E+ AL +++ TG+GKST LP LA G+ G I +PRR+A Sbjct: 78 AALPIMDQRAEIARALSAHQVIVVCGDTGSGKSTQLPQIALASGFGVEGMIAHTQPRRIA 137 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR++A R+AE LN + G VGY++R + V +TRL++VT+G+L Q DP+L+ + Sbjct: 138 ARSLATRIAEELNTEVGAGVGYKVRFSDRVRFSTRLKLVTDGMLLAETQGDPDLAHYDTI 197 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R +LK++I SAT+D R + AP++ GRS Sbjct: 198 IIDEAHERSLNIDYLLGYLKRLLP-RRPELKVIITSATIDPQRFSRYFNGAPIIQIAGRS 256 Query: 181 FPVERRYLPLPAHQR------FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 +PVE RY PL + +A+ A E+ + +G +L+FLP +I+ E L Sbjct: 257 YPVEIRYRPLVSEDEDERDRSLPEAILEALDELAAETAGDVLVFLPSERDIRETAENLRK 316 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + PL+G LS +Q + AP R++VLATN+AETSLT+ GIR VVD R Sbjct: 317 HHPPRTEVLPLFGRLSATEQLRVF--APHDRRRIVLATNVAETSLTVPGIRHVVDSGLAR 374 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++R+ RT + RL + +S+AS QRAGR GR PG+ + L A+ + A +EPEIL+ Sbjct: 375 ISRYSYRTKVQRLPIEPISRASADQRAGRCGREAPGVCIRLYAEADYQVRAEFTEPEILR 434 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAA 413 ++L+ +++++ + + ++D P + +LL LGA+ + L+ G+++AA Sbjct: 435 TNLASVILQMKYLKLGEIERFDFIDPPDSRAIRDGLKLLYELGAVAADNTLTGLGRRLAA 494 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP-PRMGNSDLGVAFSRNQPAWQQRSQQL 472 L DPR+A MLV+ + + IAA L P PR + A Q W+ + Sbjct: 495 LPVDPRIARMLVAGETERALNEVLVIAAALSIPDPRQRPMNAPQAADAAQARWRDQRSDF 554 Query: 473 LKRLNVRGGEADSSL------IAPLLAGAFADRIARR----------------------- 503 L + + + + + A F + R Sbjct: 555 LALVKLWNDAQEQTRELSQRKLRLWCAEHFLSYVRLREWRDIHHQLRELVMGIGWRENAQ 614 Query: 504 ---------------------RGQDGRYQLANGMGAMLDANDALS--RHEWLIAPLLLQG 540 R + Y A G+ ++ ++ R W++A L++ Sbjct: 615 QADTAAVHRALLTGLLGNIAWRTDEQHYTGARGLKLLIFPGSGIAKRRPRWIVAAELVET 674 Query: 541 SASPDARILLALL--VDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKV 597 S RI + + + + LVQ+ W++ +G + + + + L + Sbjct: 675 S-----RIFARTVGEIRPEWVEPLAAHLVQRRYFEPFWEEKKGRVAGYESVTLYGLPLVA 729 Query: 598 QP---LAKPSEDELHQAMLNG------IRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD 648 + + + +R +G + A QL + D Sbjct: 730 RRKIDYTRVDPAAARALFIREGLVYGRLRTQG----RFLAHNRQLIAEIEALEAKSRRRD 785 Query: 649 WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSEL----- 703 VD++ L A L + S + + L ++ E Sbjct: 786 VL-VDEDVLAAFYAERLPADLADGASFERWIRRPEHD--QALFMTPQL-LMEREAVEITA 841 Query: 704 ---PAHYTVPTGSRIAIRYHED 722 P H +V G R+ +RYH D Sbjct: 842 DAYPEHLSV-GGMRLPLRYHFD 862 >UniRef50_B5GG28 ATP-dependent helicase n=3 Tax=Streptomyces RepID=B5GG28_9ACTO Length = 1333 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 171/493 (34%), Positives = 268/493 (54%), Gaps = 16/493 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 LPV+A ++ A+ V+++ TG+GK+T +P L G+ G I +PRRLA Sbjct: 77 PQLPVSAKKDDIADAIRAHQVVIVAGETGSGKTTQIPKICLELGRGVRGMIGHTQPRRLA 136 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA+R+A L+ G+ VG+++R + V T ++++T+G+L IQ D EL + Sbjct: 137 ARTVAERVASELDTPLGEAVGWKVRFTDQVSRGTYVKLMTDGILLAEIQTDRELRAYDTI 196 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D +R + +AP+V GR+ Sbjct: 197 IIDEAHERSLNIDFLLGYLAQLLP-RRPDLKVIITSATIDPERFSRHFGDAPIVEVSGRT 255 Query: 181 FPVERRYLPLPAHQRFDD------AVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 +PVE RY PL A + A+ A E+ R+ SG +L+FL G EI+ + L Sbjct: 256 YPVEVRYRPLLAEDSEEPDRDQVTAIIDAVEELRREPSGDILVFLSGEREIRDTADALEK 315 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAP-QGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R + PLY LS +Q + A R++VLATN+AETSLT+ GI+ V+D Sbjct: 316 RKFPFTEVLPLYARLSHAEQNRVFKRASGDSARRIVLATNVAETSLTVPGIKYVIDPGTA 375 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R++R+ RT + RL + +SQAS QR GR GR GI + L ++E E ++ EIL Sbjct: 376 RISRYSSRTKVQRLPIEAISQASANQRKGRCGRTSDGICVRLYSEEDFEARPEFTDAEIL 435 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE------RLSAQ 407 +++L+ +++++ G + + ++D P N+ +LLQ LGAL+ E RL+ Sbjct: 436 RTNLASVILQMTSAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDPEQKDPRKRLTQT 495 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQ 466 G+++A L DPRLA M++ A + +AA L + PR S+ + ++ Sbjct: 496 GRRLAQLPVDPRLARMVLEADRNGCVREVMVVAAALSLQDPRERPSEKQAQADQFHARFK 555 Query: 467 QRSQQLLKRLNVR 479 + L LN+ Sbjct: 556 DETSDFLAFLNLW 568 >UniRef50_D0MZQ2 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZQ2_PHYIN Length = 910 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 165/526 (31%), Positives = 266/526 (50%), Gaps = 16/526 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ A +++ A++ V+L TG+GK+T +P + + ++ + +PRR+AA Sbjct: 271 LPIYAHRSKIIEAVNDNQVVILVGETGSGKTTQIPQYIWESDRAHARVAITQPRRVAAIT 330 Query: 64 VAQRLAELLN-EKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VAQR+ E N GD+VGY +R + NTRL+ +T+G+L R P L +V+L Sbjct: 331 VAQRVCEEANRGPLGDSVGYCVRFDDTTSKNTRLKFMTDGMLVREALLSPTLERYSVVVL 390 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE--APVVISEGRS 180 DE HER+LQ D+ ++ + R DLK+++MSATLD ++ + V+ GR Sbjct: 391 DEAHERTLQTDILFGIVKRAMRK-RKDLKVVVMSATLDVALFKRFFQDFKPAVIQIPGRM 449 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQEQLASRIGS 238 F V+ Y D A+ L ++ +GS+L+FL G +I+ ++ L S Sbjct: 450 FQVDVFYTAKTQPDYLDSALVAVLQIHLEEKTSNGSILVFLTGQEDIETLETLLEEYARS 509 Query: 239 ------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +++CP++ A+ Q K PAP G+RKV+LATNIAETS+TI G+R VVD Sbjct: 510 LPADALKLMVCPIFAAMPREQQMKVFEPAPAGVRKVILATNIAETSITINGVRYVVDTGL 569 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 + F +G+ L T+ VS+A QR GRAGR PGI L +E E+ ++ P+I Sbjct: 570 VKQRSFVASSGMEMLQTESVSKAQAWQRTGRAGREAPGICYRLFPEETFEQLPERAIPDI 629 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 + L ++++L G D ++++P +L+ A L LGAL+ + +L+ G++M Sbjct: 630 QRVSLEVVVLQLKIMGIDDALAFDFIEKPLKTSLVKALEKLYALGALDNKGKLTTLGRQM 689 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQ 470 A L +P A ML+ A A A + A+L E D ++++ + Sbjct: 690 AGLPVEPMYAVMLLKATELGCAEEALSVVAMLSVESIFYSPRDKKAEAAQSRARFVAYEG 749 Query: 471 QLLKRLNVRGG--EADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 + LNV G + S + + A R + R QL Sbjct: 750 DQITLLNVFNGYIQCGSKQRNKWCRDHYINHRAMTRVESVRLQLKG 795 >UniRef50_Q0F3B4 ATP-dependent helicase HrpA n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3B4_9PROT Length = 1289 Score = 560 bits (1444), Expect = e-158, Method: Composition-based stats. Identities = 185/657 (28%), Positives = 297/657 (45%), Gaps = 69/657 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV+ + A+ V+++ TG+GK+T +P L G+ G I +PRR+A Sbjct: 69 AELPVSEKRETIAAAIAKHQVVIIAGETGSGKTTQIPKICLELGRGMAGLIGHTQPRRIA 128 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE + G+ VGY++R + G + ++++T+G+L IQ DP L + Sbjct: 129 ARSVATRIAEEMGSPIGEHVGYKVRFSDHTGTDAYIKLMTDGILLAEIQSDPLLLAYDTI 188 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT++ R EAPV+ GR+ Sbjct: 189 IIDEAHERSLNIDFLLGYLKQLLPKRR-DLKIIITSATINTGRFSAFFNEAPVIEVSGRT 247 Query: 181 FPVERRYLPLPAHQR-----FDDAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQLAS 234 PVE RY PL A+ A E + G +L+FLPG EI+ V E L Sbjct: 248 HPVEIRYRPLQGDDDDRDRDLPQAIMDAVDEAALIDRFGDILIFLPGEREIRAVTEALHQ 307 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + + PL LS +Q + R++VLATN+AETSLT+ GIR V+D R Sbjct: 308 HKMTQTEVIPLLSRLSPAEQDRVFQK--HTGRRIVLATNVAETSLTVPGIRFVIDSGLAR 365 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++R+ RT + RL + VSQAS QRAGR GR+ GI + L ++E + Q++PEI + Sbjct: 366 ISRYSTRTKVQRLPIEPVSQASANQRAGRCGRVAAGICIRLYSEESFDNRPEQTDPEIRR 425 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAA 413 ++L+ +++++ G D A ++D P + LL+ L A++ +R L+ G+K+ Sbjct: 426 TNLASVILQMSNLGLGDVAAFPFMDAPEKPAIRDGYLLLEELQAVDSKRELTLIGKKLVR 485 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQL 472 L DPR+ ML+ A ++ IA+ L + PR D+ + + Sbjct: 486 LPVDPRIGRMLLQADSERSLHEVLIIASALSVQDPRTRPMDMQQQADEKHRLFADPASDF 545 Query: 473 LKRLNVR---------------------------------------------------GG 481 L L + Sbjct: 546 LVWLKLWDWYHEQARHLSRSKLRKLCHDRFLSYIRLREWHDLHSQLLAVVREMKMTPNKQ 605 Query: 482 EADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE--WLIAPLLLQ 539 A + I L + + +Y A + L AL + W+I L++ Sbjct: 606 PATADAIHRALLAGLLSHVGLYDEKKKQYLGARNLRFSLFPGSALCKKPPKWVICGELVE 665 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV 595 S A +++ L + P LV +S W + + A+ +L + + + Sbjct: 666 TSRLFG---RTAAVINPAWLEELAPHLVNRSYSEPHWSRKRAQVAAYEKLSLYGIPI 719 >UniRef50_C1ZJL9 ATP-dependent helicase HrpA n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZJL9_PLALI Length = 1305 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 206/777 (26%), Positives = 333/777 (42%), Gaps = 107/777 (13%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 + LP+ E L L +++ TG+GKST LP L A GI+G I +PRR+A Sbjct: 80 NELPIMQRREEFLKLLSQHSVIIVCGETGSGKSTQLPKFCLEAQRGIDGLIGHTQPRRIA 139 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA RL+E L G VGY++R Q VG + ++++T+G+L IQ DP L + Sbjct: 140 ARSVAMRLSEELRAPLGQAVGYKVRFQEAVGAESYIKLMTDGILLAEIQSDPHLRRYDTI 199 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVIS 176 I+DE HERSL D L L + R DLK++I SAT+D +R Q AP++ + Sbjct: 200 IIDEAHERSLNIDFLLGYLKRLL-TQRKDLKVIITSATIDAERFSQHFEVDGKPAPIIEA 258 Query: 177 EGRSFPVERRYLPL------PAHQRFDDAVAV--ATAEMLRQESGSLLLFLPGVGEIQRV 228 GRS+PVE Y P+ D A+ A E Q G +L+FLP EI Sbjct: 259 SGRSYPVEILYRPILSKGDAAEDNDIDMQQAIVEAVQEATSQGFGDILVFLPTEREIHET 318 Query: 229 QEQLA--SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 286 + L R S + PLY LS +Q++ + Q R+++LATN+AE+SLT+ GIR Sbjct: 319 AKILRGGERAASHREILPLYARLSAAEQQRVFQVS-QSQRRIILATNVAESSLTVPGIRY 377 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 V+D R++R+ PR+ + RL + VSQAS QRAGR GR+ PGI L + Sbjct: 378 VIDTGTVRLSRYSPRSKIQRLPIEPVSQASANQRAGRCGRVGPGICYRLYDEADFAARDP 437 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLS 405 + PEIL+++L+ ++++ G + +LD P ++ R L LGA++ RL+ Sbjct: 438 FTVPEILRTNLAQVILKTESLGLGSLSSFPFLDPPRTESIRDGYRTLFELGAVDLDNRLT 497 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPA 464 G+K++ + DPR+A +L +A A IA+ LE + R A Sbjct: 498 ELGKKLSRIPTDPRIARVLFAADEQLCLAEMLIIASALETQDVRERPVGKQDAADEAHAK 557 Query: 465 WQQRSQQLLKR------------------------------------------------- 475 + + + Sbjct: 558 FLDETSDFVTYLKIWDFYHELKAKLSHSQLKKACSQNYLSLTRLREWSDLHRELSELVRA 617 Query: 476 --LNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRH--EW 531 L +R D+S I + F IA + G YQ+ G ++ +++ W Sbjct: 618 AGLKIRPRLQDTSAIHRAILAGFPTNIAMKT-DSGEYQMGGGALGVIWPGSGMAKQKPRW 676 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLV-QQSDTVEWDDAQGTLKAWRRLQI 590 ++A ++ + + +A ++ + + LV + WD ++ A+ ++ + Sbjct: 677 IVAAEFVETTRR---FLRIAGKIESEWVEPYVEHLVNRTYHDPHWDARSRSVVAYEKVSL 733 Query: 591 GQLTV---KVQPLAKPSEDELHQAMLNGIRDKG---------LSVLNWTAEAEQLRLRLL 638 L + + + + + + + +G L E E L+ RL Sbjct: 734 QGLPIVNRRKTQFGRVNAAQAQEIFIRQALVEGDYPNPPAFLAHNLALRQELEDLQARLR 793 Query: 639 C---------AAKWLPEYDWPAVDDESLLAALETWL------LPHMTGVHSLRGLKS 680 AK+ + P + D L+ WL P + + L Sbjct: 794 KTSLIADPETQAKFYAQRLPPDIYDG---PRLDKWLRIATKDSPDLLKMTREDLLAQ 847 >UniRef50_Q9VR29 CG3225 n=19 Tax=Neoptera RepID=Q9VR29_DROME Length = 678 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 166/525 (31%), Positives = 252/525 (48%), Gaps = 17/525 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAAR 62 LP+ ++L L+ V+L TG+GKST +P L G I + EPRR++ Sbjct: 47 LPIRQYRDQILYCLEKHQVVILVGETGSGKSTQVPQYLYEWGWHTKGLIGITEPRRVSTV 106 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +A R+A+ E GDTVGY +R + T+++ +TEG+L R + DP L+ G++I+ Sbjct: 107 TLANRVAQERGELVGDTVGYVVRFLESMSSCTKIKFMTEGILLREVLADPLLTQYGVIIV 166 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-----PEAPV-VIS 176 DE HER++ D+ L LL + + R LKL+I SAT+D + E V + Sbjct: 167 DEAHERNMLTDMILGLLKKILRK-RSSLKLIISSATIDASFFSEFFSWPGSGEVSVKLSI 225 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 EGR PV YL P + V ++ G +L FL G E+ + L I Sbjct: 226 EGRMHPVSNFYLNEPCADYVKETVETVWKLHQKEPPGDILAFLTGQEEVLEALDLLREYI 285 Query: 237 GS----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 S ++ + P+YG++S DQ P+G RKVVLATNIAETS+TI GI V+DC Sbjct: 286 ASSEQENLKVLPMYGSMSSTDQLSVFFTPPKGTRKVVLATNIAETSITIPGIVYVIDCGY 345 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 +V ++P+T L+ VS+AS QRAGRAGR+ PG L K E A + PE+ Sbjct: 346 VKVKWYNPKTCSDSLVIVPVSKASAIQRAGRAGRMRPGKVYRLYTKSDYEALAPRQPPEM 405 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLS-AQGQK 410 +S+LSG +++L G + + + PP NLL+A L L A++ + L+ G Sbjct: 406 RRSELSGAILQLKALGIGNILRFDFPSPPPAQNLLSALESLFALDAIDEQGNLTKPVGYL 465 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE---PPRMGNSDLGVAFSRNQPAWQQ 467 +A L L+ ML + + I A+L+ R ++ + ++ Sbjct: 466 LAELPFSAMLSKMLYVSGQMGCSEEIITIIALLQVQSIFSRPASAVAQQSGRIAHRKFEV 525 Query: 468 RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + LN G + + F +R R QL Sbjct: 526 AEGDFITMLNAYTGFVEEGMTKEFCGQYFLIYRNLKRAHSLREQL 570 >UniRef50_B8FCF5 ATP-dependent helicase HrpA n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCF5_DESAA Length = 1357 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 165/497 (33%), Positives = 263/497 (52%), Gaps = 21/497 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LP++ E++ A+ V+++ TG+GK+T +P LA G++G I +PRR+AA Sbjct: 114 ELPISGRSEEIVEAIQENQVVVITGETGSGKTTQIPKMCLAAGRGVDGLIGCTQPRRVAA 173 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNC--VGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 VAQR+AE L E G +VGY++R + ++++T+GVL Q DP + Sbjct: 174 VTVAQRIAEELGEDLGKSVGYKIRFKETGGKSEAPFIKIMTDGVLLAEFQHDPFFTKYDT 233 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I+DE HERSL D L +L ++ R DLK++I SAT+D ++ + +AP+V GR Sbjct: 234 IIVDEAHERSLNIDFILGILKNLLPK-RPDLKVIITSATIDTEKFSKAFNDAPIVEVSGR 292 Query: 180 SFPVERRYLPL-------PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 +PVE RY PL D AV R+ G +L+F+P +I+ + L Sbjct: 293 MYPVEVRYEPLLTSGDENSDAGYVDGAVRAVETIFSRRPKGDILVFMPTESDIRETCDLL 352 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +R + L+ PL+G L+ +Q + A KVV+ATN+AETS+TI GIR VVD Sbjct: 353 QARRFPNALILPLFGRLAGGEQARVF--ARHSGIKVVVATNVAETSITIPGIRYVVDTGL 410 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R++R+ PRTG T L ++S++S QR GR GR+ GI + L +E E + PEI Sbjct: 411 ARISRYSPRTGTTSLPVDKISKSSADQRMGRCGRVAEGICIRLYDEEDYESRPQFTLPEI 470 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-------EGERLS 405 L+++L+ +++ ++ + ++D P ++ +L+ LGAL + L+ Sbjct: 471 LRANLAEVILRMVASRLPEVHNFPFVDPPDPRSIRDGFNVLRELGALLDPRQGEKSYTLT 530 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL-EEPPRMGNSDLGVAFSRNQPA 464 +G+ MA L DPR++A+L+ A A A IA+ L PR ++ V + Sbjct: 531 PKGRTMARLPVDPRISAILIEAHPRGCLAEALIIASALCIIDPRERPAEKAVQADQAHRT 590 Query: 465 WQQRSQQLLKRLNVRGG 481 + S L LN+ Sbjct: 591 FAHGSSDFLFYLNLWQA 607 >UniRef50_A3YEF6 ATP-dependent helicase HrpA n=1 Tax=Marinomonas sp. MED121 RepID=A3YEF6_9GAMM Length = 1328 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 160/495 (32%), Positives = 260/495 (52%), Gaps = 21/495 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAA 61 SLPVAA ++ ++ V+++ TG+GK+T LP L A G+ G I +PRRLAA Sbjct: 62 SLPVAAKAEYIIASIKANQVVIVAGETGSGKTTQLPKMCLQAGLGVAGMIGHTQPRRLAA 121 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+++ L + GD VG+++R + T ++++T+G+L IQ+D L +I Sbjct: 122 RSVADRISDELGVELGDEVGFQVRFNDESSDKTLVKLMTDGILLAEIQQDKFLQKYQAII 181 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK+++ SAT+D R + +APV GR+F Sbjct: 182 IDEAHERSLNIDFLLGYLKRILPS-RPDLKIIVTSATIDVARFSKHFNDAPVFEVSGRTF 240 Query: 182 PVERRYLPL---------PAHQRFDDAVAVATAEMLRQES-------GSLLLFLPGVGEI 225 PVE RY PL A Q + + A ++ +E +L+FLPG EI Sbjct: 241 PVEIRYQPLLLKSDSEEVDADQSMEQGIVDAVHTIIHEEKLSSFRGASDILVFLPGEREI 300 Query: 226 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 + E L + PLY LS ++Q+K R++VL+TN+AETSLT+ GIR Sbjct: 301 RETAELLRREELRHTEVVPLYARLSSSEQQKIFKS--HSGRRIVLSTNVAETSLTVPGIR 358 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 V+D R++R+ R+ + +L +++SQAS QRAGR GR+ GI + L + + A Sbjct: 359 YVIDPGVARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVADGICIRLYDEADYQARA 418 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLS 405 ++PEI +++L+ +++++ + S+++ P + R L LGA+ ERL+ Sbjct: 419 EFTDPEIFRTNLASVILQMANLRLGAVEKFSFVEMPDKRLINDGYRALNELGAINKERLT 478 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPA 464 G+++A L DP+L M+++A A I + L + PR + + Sbjct: 479 PIGRQLAKLPIDPKLGRMIIAADKLGVLNEIAIIVSALTIQDPRERPQEKKTQSDQAHAV 538 Query: 465 WQQRSQQLLKRLNVR 479 + + LN+ Sbjct: 539 DKDADSDFVVLLNLW 553 >UniRef50_D0W5V2 ATP-dependent helicase HrpA n=3 Tax=Neisseria RepID=D0W5V2_NEICI Length = 1417 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 169/530 (31%), Positives = 269/530 (50%), Gaps = 19/530 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 ++LPV L E+ A+ ++ TG+GK+T LP L G G I +PRRLA Sbjct: 57 NTLPVHEKLEEIKKAIAENQVTIICGETGSGKTTQLPKICLELGRGAAGLIGHTQPRRLA 116 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA+R+AE L + G VGY++R + + ++++T+G+L Q D L+ + Sbjct: 117 ARSVAERIAEELKSEIGSAVGYKVRFTDHTSRDACVKLMTDGILLAETQTDRYLAAYDTI 176 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D +R Q APV+ GR+ Sbjct: 177 IIDEAHERSLNIDFLLGYLKQLLP-RRPDLKVIITSATIDAERFSQHFNSAPVLEVSGRT 235 Query: 181 FPVERRYLPLPAHQRFD------DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 +PVE Y PL + D D + A E+ G +L+FLPG EI+ E L Sbjct: 236 YPVEILYRPLTSKDEDDAEVELTDVIVDAADELAGHGEGDILVFLPGEREIREAAEALRK 295 Query: 235 R-IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + + + PL+ LS +Q K P R++VLATN+AETSLT+ GI+ V+D Sbjct: 296 STLRRNDEILPLFARLSHAEQHKIFHPT-GAKRRIVLATNVAETSLTVPGIKYVIDTGLA 354 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 RV R+ R + +L +++SQA+ QR+GR GR+ G+ + L ++E ++PEI+ Sbjct: 355 RVKRYSARAKVEQLHVEKISQAAARQRSGRCGRVSAGVCIRLFSEEDFNNRPEFTDPEIV 414 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMA 412 +S+L+ +++ + D A +L+ P + ++L LGA+ E L+ G++MA Sbjct: 415 RSNLAAVILRMASLNLGDVAAFPFLEMPDSRYINDGFQVLLELGAVNEHNGLTRLGEQMA 474 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQ 471 L DP++A +L++AK D A IA+ L + PR + A ++ + + Sbjct: 475 HLPIDPKIARILLAAKKHDCMAEILVIASALSIQDPRERPLEARDAAAKAHERFTDKQSD 534 Query: 472 LLKRLNVRGGEADSSLIAP-------LLAGAFADRIARRRGQDGRYQLAN 514 L LN+ F + R ++ +QLA Sbjct: 535 FLAYLNIWDSFQRERDKGLSNKQLVQWCRQYFLSHLRMREWRELHHQLAQ 584 Score = 55.2 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 14/180 (7%) Query: 443 LEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIAR 502 L+ G+ DL + Q +Q Q+ EA I L + Sbjct: 607 LKPSESQGDQDLSAKLKQKQLDKKQHRAQIHA-----AKEAGYEQIHRALLTGLITNVGM 661 Query: 503 RRGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDELV 560 + Y A G L AL ++ +W++A L++ + + ++ + + Sbjct: 662 KSPDGNDYTGARGSRFHLFPASALFKAKPKWVMAAELMETTRLYARDV---AVIQPEWIE 718 Query: 561 QRCPQLVQQSD-TVEWDDAQGTLKA-WRRLQIGQLTVKVQPLA--KPSEDELHQAMLNGI 616 Q P LV+ W+ +G + A R G + +P++ K + +E + + G Sbjct: 719 QEAPHLVRYHYYEPHWEQKRGEVVASERVTLYGLTVLPRRPVSYGKVAPEEAREIFIRGA 778 >UniRef50_A4VNQ0 ATP-dependent helicase HrpA n=32 Tax=Proteobacteria RepID=A4VNQ0_PSEU5 Length = 1425 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 180/536 (33%), Positives = 274/536 (51%), Gaps = 29/536 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLP+AA E+ AL+ ++++ TG+GK+T LP L G++G I +PRRLAA Sbjct: 138 SLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQPRRLAA 197 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE L G+ VGY++R ++ T ++++T+G+L Q D L +I Sbjct: 198 RSVATRVAEELGAPLGELVGYQVRFEDQSTERTLIKLMTDGILLAETQHDRFLEKYDTII 257 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R + AP+V GR++ Sbjct: 258 VDEAHERSLNIDFLLGFLKTLLP-RRPDLKVIITSATIDLERFSEHFDGAPIVEVSGRTY 316 Query: 182 PVERRYLPLPAHQR-----------FDDAVAVATAEMLR------QESGSLLLFLPGVGE 224 PVE Y PL A D + A E+ Q G +L+FLPG E Sbjct: 317 PVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEIAAHERSVGQRPGDVLVFLPGERE 376 Query: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 I+ E L + PLY L+ +Q+K P P RK+VLATN+AETSLT+ GI Sbjct: 377 IRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPG--RKIVLATNVAETSLTVPGI 434 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 R V+D R++R+ R + RL + VSQAS QR GR GR+EPGI + L ++E Sbjct: 435 RYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEEDFLGR 494 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-R 403 A ++PEIL+++L+ +++++L D +++ P + LLQ L A+ E + Sbjct: 495 PAFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELSAVNRENQ 554 Query: 404 LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQ 462 L+ G+++A L DPRL ML+ A A +A+ L + R +D A + Sbjct: 555 LTPLGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQQAADQAH 614 Query: 463 PAWQQRSQQLLKRLNVRGGEAD------SSLIAPLLAGAFADRIARRRGQDGRYQL 512 W+ +N+ G + S+ + F + + R +D QL Sbjct: 615 AQWKDPDSDFAALINLWRGFEEQRQALGSNALRSWCRKNFLNYLRLREWRDAHRQL 670 >UniRef50_C1DAE5 HrpA n=2 Tax=Betaproteobacteria RepID=C1DAE5_LARHH Length = 1290 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 206/796 (25%), Positives = 345/796 (43%), Gaps = 87/796 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61 +LPV ELL A+D V++ TG+GK+T LP L L G G I +PRRLAA Sbjct: 74 ALPVNQKRDELLAAIDANQVVIVCGETGSGKTTQLPKLCLQLGRGTRGLIGHTQPRRLAA 133 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE L + G VG+++R + + ++++T+G+L Q D L +I Sbjct: 134 RSVASRIAEELGTQIGQGVGFKVRFTDRTSDQSFIKLMTDGILLAETQTDRYLEAYDTLI 193 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R + APV+ GR++ Sbjct: 194 IDEAHERSLNIDFLLGYLRQLLP-RRPDLKIIITSATIDAERFSRHFNGAPVIEVSGRTY 252 Query: 182 PVERRYLPLPAHQR------FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 PVE RY L +DA+ A E+ R SG +L+FLPG EI+ E L Sbjct: 253 PVEVRYRALGEKDEDDRDLAMEDAIVDAVDELARLGSGDILVFLPGEREIRDTAEALRKA 312 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 R+ + PL+ LS +Q + + R++VLATN+AETSLT+ GIR V+D R Sbjct: 313 RLTVRYEVLPLFARLSNEEQNRIFKGS--NGRRIVLATNVAETSLTVPGIRYVIDTGLAR 370 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 + R+ PR + +L+ +++SQA+ QRAGR GR+ G+ + L A++ A ++PEI++ Sbjct: 371 IKRYSPRAKVEQLLVEKISQAAARQRAGRCGRVAAGVCIRLYAEDDFNARPAFTDPEIVR 430 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAA 413 S+L+ +++ + + ++D P + +L LGA+ E L+ G+++A Sbjct: 431 SNLAAVILRMASLRLGAVVEFPFIDPPSARLIADGYDVLHELGAVSERGELTPLGRELAR 490 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQL 472 + DP++ ML++A++ + + L + PR D A R Q + Sbjct: 491 IPVDPKIGRMLLAARDYHCLREMLVLVSALSIQDPRERPFDAREAAERAQARFADERSDF 550 Query: 473 LKRLNVRGGEADS-------SLIAPLLAGAFADRIARRRGQDGRYQLAN----------- 514 L L + D+ + L F + R ++ QLA Sbjct: 551 LGFLALWDFFDDALKHKKSNRQLVELCHSHFLSHLRLREWRELHGQLAQIAHDLELRENQ 610 Query: 515 ----------------------------------GMGAMLDANDALSRH--EWLIAPLLL 538 G+ + L + +WL+A L Sbjct: 611 TPATFEQLHKALLTGLLGNLGMKSMEGDDYLGARGIHFHVFPGSGLKKSKPKWLVAGELT 670 Query: 539 QGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQL-TVK 596 + S ++ + + LV++ W+ A+G + A R+ + L V Sbjct: 671 ETSR---LYARTVARIEPEWIEPLAMHLVKRHYFEPHWEKARGEVVASERVTLYGLNIVP 727 Query: 597 VQPLA--KPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAV 652 + ++ + E Q + G + + ++L + D V Sbjct: 728 RRTVSYGRIDATEARQIFVREALANGQLHTQAPFFRHNQRLIREVEELEHKARRQDVL-V 786 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLK----SLDIYQALRGLLDWGMQQR----LDSELP 704 D+E+L+A + + + S + D D+ MQ + + P Sbjct: 787 DEETLVAFYDERIPADICDARSFDAWREGAEKADPKLLFLDR-DYLMQHAAEHITEEQFP 845 Query: 705 AHYTVPTGSRIAIRYH 720 P G + +RY Sbjct: 846 EWLDTPDGR-LRLRYR 860 >UniRef50_P15938 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 n=7 Tax=Saccharomycetaceae RepID=PRP16_YEAST Length = 1071 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 157/534 (29%), Positives = 256/534 (47%), Gaps = 26/534 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK---IILLEPRRLA 60 LPV +LL+ + V++ TG+GK+T L L N + I++ +PRR+A Sbjct: 350 LPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKSIVVTQPRRVA 409 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCV-GPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A +VA+R+A + G VGY +R ++ T+L+ VT+G+L R D L Sbjct: 410 AISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETLLDDTLDKYSC 469 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI+DE HERSL D+ L + R DLKL+I SAT++ + AP GR Sbjct: 470 VIIDEAHERSLNTDILLGFFK-ILLARRRDLKLIITSATMNAKKFSAFFGNAPQFTIPGR 528 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEM--LRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 +FPV+ Y P + AV+ A SG +L+F+ G +I+ + L + Sbjct: 529 TFPVQTIYTSNPVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDTLQEKFL 588 Query: 238 ---------------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 +D+ + P+Y AL + Q K RK+++ATNIAETSLTI+ Sbjct: 589 QVYSKKFGTANFEEINDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIK 648 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA- 341 GIR V+DC ++ ++P+ GL L+ +S+A+ QR+GRAGR PG + L ++ Sbjct: 649 GIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRSGRAGRTAPGTAYRLYTEDTFK 708 Query: 342 ERAAAQSEPEILQSDLSGLLMELLQWGCSD-PAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 E Q+ PEI +++LS L+ L +D ++ ++D+PP+ L++ L +GA++ Sbjct: 709 EDMYLQTIPEIQRTNLSNTLLLLKSLDVTDELSKFPFIDKPPLQTFLSSLYELWFIGAID 768 Query: 401 G-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAF 458 +L+ G +MA P L+ +L+ A + + I ++L P + Sbjct: 769 TSGQLTPLGLQMAKFPLQPSLSKILLIAVRNGCSDEMLTIVSMLSVPQVFYRPKERQKEA 828 Query: 459 SRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + + L LNV ++ + F + R +D R QL Sbjct: 829 DIARNKFFIAKSDHLTLLNVFEQWRANNFSSHWCNKHFVQYKSLVRARDIRDQL 882 >UniRef50_C0H5K5 Splicing factor, putative n=2 Tax=Plasmodium falciparum 3D7 RepID=C0H5K5_PLAF7 Length = 1151 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 146/571 (25%), Positives = 248/571 (43%), Gaps = 64/571 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAA 61 SLP+ ELL A+ +++ TG+GK+T + L NG I +PRR+AA Sbjct: 478 SLPIYKSKHELLDAVYNNNIIIIVGETGSGKTTQIVQYLYEEGYHRNGIICCTQPRRVAA 537 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA R++ +N G VGY +R ++ +T++ VT+G+L R D EL ++I Sbjct: 538 VSVAYRVSYEMNVDIGSLVGYTIRFEDNTTKDTKIRYVTDGILLRETLNDKELDKYSVII 597 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERS+ D+ L +L ++ R+DLKL++ SAT+D + AP+ +GR+F Sbjct: 598 MDEAHERSINTDVLLGILKNICLK-RNDLKLIVTSATIDAKKFSAFFGNAPIYNIQGRTF 656 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQES-----GSLLLFLPGVGEIQRVQEQLASRI 236 V YL P + + AV A + + G +L+F+ G +I L+ R Sbjct: 657 KVHIEYLRTPCNDYIECAVQKAIQIHVSDNNYDNNFGDILIFMTGQEDINATCYLLSERF 716 Query: 237 GS----------------------------------------------------DVLLCP 244 + P Sbjct: 717 YEVYESYKESKNNKKDTINKIKNILNEDNNNNNNDSNIKKKVDGDNNTNDHMIYPFYIFP 776 Query: 245 LYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGL 304 +Y LS Q K +RK++++TNIAETSLT++GI+ V+D ++ ++ G+ Sbjct: 777 IYSQLSSEQQSKIFKKY--DLRKIIVSTNIAETSLTLDGIKYVIDTGYCKLKVYNQTIGM 834 Query: 305 TRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQSDLSGLLME 363 L +SQA+ QR+GRAGR GI L + + PEI +S+LS +++ Sbjct: 835 DVLQVTPISQANANQRSGRAGRTGAGICYRLYTENTFLCDLYQNNIPEIQRSNLSNVVLL 894 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAA 422 L + + ++D P +++ + L +LGA+ E L+ G+KM DP L+ Sbjct: 895 LKSLHVQNLFEFDFIDVPSKESIINSLHELWVLGAINNEGNLTDIGRKMVQFPLDPPLSK 954 Query: 423 MLVSAKNDDEAATAAKIAAILEEPPRMGNS-DLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 +++ ++N I ++L P S + + + + L LN+ Sbjct: 955 IVIYSQNFQCTKEILIIVSMLSSPSIFLESKENNESIESKKEKFTVPESDHLTLLNIYLQ 1014 Query: 482 EADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + F A + ++ QL Sbjct: 1015 WRSHNYSYSWCTKNFIQYKALNKAKEVYSQL 1045 >UniRef50_A8IHD9 DEAH-box nuclear pre-mRNA splicing factor n=2 Tax=Viridiplantae RepID=A8IHD9_CHLRE Length = 689 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 171/541 (31%), Positives = 255/541 (47%), Gaps = 18/541 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK------IILLEPR 57 LP A +LL L ++L TG+GK+T +P LLA I + +PR Sbjct: 41 LPAWAARDKLLALLQQHRTLVLVGETGSGKTTQIPQFLLAAKFGKSSGSKGACIAVTQPR 100 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AA VA+R+AE + K G VGY +R ++ P TR++ +T+G+L R DP LS Sbjct: 101 RVAAMTVARRVAEEMGTKIGQQVGYAIRFEDVTSPATRIKYMTDGLLLREALVDPLLSRY 160 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 +V++DE HER++ D+ L L+ VQ DD +L++MSATLD R P A + Sbjct: 161 RVVVIDEAHERTVHTDVLLGLIKGVQARRGDDFRLVVMSATLDAARFVDYFPGAVAALVR 220 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI- 236 GR FPV+ Y P D A+ + G +L+FL G EI + L + Sbjct: 221 GRQFPVQVLYTARPEDNYLDAAINATLQVHGEEPEGDVLVFLTGQDEIDSAERLLKAAAA 280 Query: 237 ----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 ++L+ P+Y AL Q K PAP G RK +LATNIAETS+TI G+R V+D Sbjct: 281 VGGRPRELLVLPIYAALPPEQQMKVFEPAPPGTRKAILATNIAETSITIPGVRYVIDTGH 340 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 + ++ + GL L VSQA QR+GRAGR PG + L + + AA + PEI Sbjct: 341 VKARDYNAKLGLESLAVVPVSQAQARQRSGRAGREGPGKAYRLYTEADFSQLAATTPPEI 400 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG--ERLSAQGQK 410 + +L+ ++++L G D ++D PP +L + LL LGAL+ + G + Sbjct: 401 TRCNLASVVLQLKAMGIDDVLGFDFMDPPPRTAILRSLELLFALGALDNSGKLTEEVGLR 460 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRS 469 ++ L DP +L++A A + A++ + + + R Sbjct: 461 LSRLPVDPMFGRVLLAAAELGCGVEALAVVAMVSADNVFHTPRQKEAEWRAARLKFLSRE 520 Query: 470 QQLLKRLNVRGG----EADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDA 525 L LNV G + F + A R+ +D QL MG Sbjct: 521 GDHLTLLNVFRGFMELPKSHKARTGWCSDNFINIRALRKAEDIYTQLVRFMGHPCPPGLG 580 Query: 526 L 526 L Sbjct: 581 L 581 >UniRef50_B7GWG2 ATP-dependent helicase HrpA n=17 Tax=Acinetobacter RepID=B7GWG2_ACIB3 Length = 1294 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 174/708 (24%), Positives = 315/708 (44%), Gaps = 89/708 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPL-QLLAHPGINGKIILLEPRRLAA 61 LPV L+ A+ ++++ TG+GK+T LP +LA G+ G I +PRRLAA Sbjct: 68 DLPVTQYTDRLIEAIQKHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGMIGHTQPRRLAA 127 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+V+QR+AE + EK G+++G+++R ++ + ++T+G+L + D LS +I Sbjct: 128 RSVSQRIAEEVGEKLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTII 187 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D + L + R DLK+++ SATLD +R AP+ EGRS+ Sbjct: 188 IDEAHERSLNIDFIMGYLKQLLPK-RPDLKVIVTSATLDVNRFSNYFNNAPIFEVEGRSY 246 Query: 182 PVERRYLPLPAHQ--------------RFDDAVAVATAEML-------RQESGSLLLFLP 220 PVE RY P+ AV A E E +L+F Sbjct: 247 PVEVRYRPISEMNIGGSDDDEFDDFEENLPRAVVQAVEECFADAEEKGHPEHADILIFSS 306 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 EI+ +QE L + PLY L++++Q+K P+ +G R++++ATN+AET+LT Sbjct: 307 TEQEIRELQETLQKYGPRHTEILPLYARLAVSEQQKIFSPSGKG-RRIIIATNVAETALT 365 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + IR V+D R++R++ R+ + RL + +SQA+ QR GR GR+ PG+ + L ++E Sbjct: 366 VPNIRYVIDSGFARISRYNYRSRVQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEED 425 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 +EPEI +++L+ +++++ G + +++ P + ++LL LGAL Sbjct: 426 FLSRPEFTEPEIKRTNLASVILQMQSLGLGELENFDFIEPPDFRLVNDGRKLLIELGALN 485 Query: 401 GER--LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVA 457 ++ L+ GQ MA + DPRLA M+V + + + L + PR +D + Sbjct: 486 EKKNELTKVGQMMARMPIDPRLARMIVGGAHFGVLKEILVVVSALAVQDPRERPADKQMQ 545 Query: 458 FSRNQPAW----------------------------------QQRSQQLLKRLNVRGGEA 483 + + +Q L+ + Sbjct: 546 ADQKHALFKEADSDFLFYLKLWDTLNPKGEAGMSENKRRQFAKQHFLSWLRLREWKQTHQ 605 Query: 484 DSSLIAPLLAGAFADR------------------IARRRGQDGRYQLANGMGAMLDANDA 525 +A L +F ++ IA + + + A + Sbjct: 606 QLVELAEGLKLSFNEKPANYENLHRALLTGLLSFIANKTDERNTFMAVRQQKAKVFPAST 665 Query: 526 LS--RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTL 582 L W++A +++ S + +D + ++ L++ W G + Sbjct: 666 LHKTNTAWVMAFEMVETS---QVYLRTLAKIDPEWILLAARDLLKYHYFEPHWSKKAGIV 722 Query: 583 KAWRRLQIGQLTVKVQPL---AKPSEDELHQA-MLNGIRDKGLSVLNW 626 A+ ++ + L ++ + L K + H+ + + + L + Sbjct: 723 NAYAQISLFGLIIEPKRLVNFEKVDQPAAHEIFLRDALTTGNLGTVPP 770 >UniRef50_B9Z2A4 ATP-dependent helicase HrpA n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z2A4_9NEIS Length = 1314 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 162/492 (32%), Positives = 262/492 (53%), Gaps = 12/492 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV E+ A+ V++ TG+GK+T +P L G+ G I +PRRLAA Sbjct: 75 ALPVNQKREEIRAAIAKHQVVIICGETGSGKTTQIPKICLELGRGVYGLIGHTQPRRLAA 134 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+A+ L + G VG+++R + + + ++++T+G+L Q D L +I Sbjct: 135 RSVATRIAQELGSELGAHVGFKVRFTDKLSDKSVIKLMTDGILLAETQTDRYLEAYDTII 194 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK+++ SAT+D +R + APV+ GR+F Sbjct: 195 IDEAHERSLNIDFLLGYLKQMLP-RRPDLKVIVTSATIDAERFARHFDGAPVIEVSGRTF 253 Query: 182 PVERRYLPLPAHQR------FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 PVE RY PL +DA+ A E+ R G +L+FLPG EI+ E+L Sbjct: 254 PVEVRYRPLKERDEDEREVEMEDAIVDAVDEISRHGPGDMLVFLPGEREIRDTAEKLRKS 313 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + PL+ LS DQ+K P G R++VLATN+AETSLT+ GI+ V+D R+ Sbjct: 314 GIRGYEILPLFARLSNEDQQKIFK--PSGGRRIVLATNVAETSLTVPGIKYVIDTGLARL 371 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 R+ PR + +L +++SQA+ QRAGR GR+E G+ + L ++ A ++PEI++S Sbjct: 372 NRYSPRAKVEQLQVEKISQAAARQRAGRCGRVEAGVCVRLYGEDDFNARPAFTDPEIVRS 431 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 +L+ +++ + +L+ P + ++L LGA++ + L+ G+++A L Sbjct: 432 NLAAVILRMAALRLGRVDDFPFLEAPSSRLIADGYQVLTELGAVDEKSELTPVGKELARL 491 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 DP++ ML++A++ IAA L + PR + A R Q + L Sbjct: 492 PIDPKIGRMLLAARDLGCVREVLIIAAALSIQDPRERPFEAREAAERAQQKFADEKSDFL 551 Query: 474 KRLNVRGGEADS 485 L++ D+ Sbjct: 552 SFLHLWDFFQDA 563 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 72/189 (38%), Gaps = 12/189 (6%) Query: 500 IARRRGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDID 557 + + + Y G+ + L ++ +WL+A L++ + V+ + Sbjct: 653 LGMKSQESDDYLGTRGVHFHVFPGSGLKKAKPKWLVAAELVETTK---LYARCVGKVEPE 709 Query: 558 ELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV-KVQPLA--KPSEDELHQAML 613 + + P L++ W+ +G + A R+ + LT+ +P++ + + +E + + Sbjct: 710 WVEKLAPHLIKYHYFDPHWEKTRGEVVASERVTLYGLTLVPRRPVSYGRIAPEEARELFI 769 Query: 614 NG--IRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTG 671 G + + S W +QL + D VD+++L A + H+ Sbjct: 770 RGALVAMEYASNAPWFQRNQQLIREVEQLEHKARRQDVL-VDEDALFAFYAERIPAHVVD 828 Query: 672 VHSLRGLKS 680 S + Sbjct: 829 AASFEAWRK 837 >UniRef50_A7E6W3 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7E6W3_SCLS1 Length = 696 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 155/558 (27%), Positives = 257/558 (46%), Gaps = 49/558 (8%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP+A LL ++ P ++ TG+GK+T +P L +I + +PRR+AA Sbjct: 21 LPIAQHRESLLYLIESYPVTIVIGHTGSGKTTQIPQFLEKAGWCANGKQIAVTQPRRVAA 80 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 VA R+AE + + G VGY +R ++ T+++ +T+G+L R DP LS +++ Sbjct: 81 TTVAIRVAEEVGCEVGKEVGYSIRFEDVTSAATKIKFLTDGLLLREALVDPLLSRYSVIM 140 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP--------- 172 +DE HERSL D+ L +L + + +DL+++I SATL + P Sbjct: 141 VDEAHERSLSTDILLGVLKKILKKRPNDLRIIISSATLQAEDFLNFFSNDPEVEAKPNVD 200 Query: 173 ---------------------------VVISEGRSFPVERRYLPLPAHQRFDDAVAVATA 205 ++ EGR +PV+ YL PA + A+ Sbjct: 201 DAMTLDDLIAQGSSSTNGSKNDGKIGQIISLEGRMYPVDILYLENPAEDYLERAIDTVFD 260 Query: 206 EMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS------DVLLCPLYGALSLNDQRKAIL 259 ++ G +L+FL G EI + + ++ R S ++ PLY LS Q Sbjct: 261 IHTKEPDGDILVFLTGREEIDKAVQAISERAASLHPRSQALMPLPLYAGLSTEQQMFVFE 320 Query: 260 PAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQ 319 A + RKV+ +TNIAE S+TI+GI VVDC ++ ++P TG+ L +S+AS TQ Sbjct: 321 LAQENTRKVIFSTNIAEASVTIDGIIYVVDCGFVKLRAYNPITGIETLTATPISKASATQ 380 Query: 320 RAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLD 379 R+GRAGR +PG L + + + PEI +S+L+ ++++L G + + +L Sbjct: 381 RSGRAGRTKPGKCFRLYTEANFQALEEATVPEIQRSNLAPIILQLKALGIDNIVRFPFLT 440 Query: 380 QPPVVNLLAAKRLLQMLGALEGE-RLS-AQGQKMAALGNDPRLAAMLVSAKNDDEAATAA 437 PP ++ LL LGAL+ +L+ G +MA L +P +A L+SA + + + Sbjct: 441 SPPAELIIRGLELLYSLGALDTYAKLTKPLGTRMAELAVEPMMAKTLLSASSFNCLSEIL 500 Query: 438 KIAAILEEPPRM--GNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAP-LLAG 494 IAA+ + + D A + + + LN+ P Sbjct: 501 TIAAMTSVGGNIFYNDYDEKKAMETAKRKFAVEEGDHITLLNIYQSFITKGKKQPRFCHD 560 Query: 495 AFADRIARRRGQDGRYQL 512 + + A + R QL Sbjct: 561 NYLNFKALSKAISIRSQL 578 >UniRef50_Q1YSZ9 ATP-dependent helicase HrpA n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=Q1YSZ9_9GAMM Length = 1309 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 170/484 (35%), Positives = 266/484 (54%), Gaps = 8/484 (1%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 LPV+A E+ L ++++ TG+GK+T +P L A G+ G I +PRR+A Sbjct: 83 PELPVSARADEIAELLTKHQVIVVAGETGSGKTTQIPKICLQAGRGVRGLIGHTQPRRIA 142 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+AE L G+ VGY++R + PN+ ++++T+G+L IQRD LS + Sbjct: 143 ARTVATRIAEELKVNIGEAVGYQVRFSDQSAPNSLIKLMTDGILLAEIQRDRFLSAYDTI 202 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L ++ R DLK++I SAT+D D+ + +APVV GRS Sbjct: 203 IIDEAHERSLNIDFLLGYLKNLLPQ-RPDLKIIITSATIDVDKFSKHFNDAPVVEVSGRS 261 Query: 181 FPVERRYLPLPAHQRFDDAVAVAT--AEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPV+ Y + D + V Q++G +L+FL G EI+ V + Sbjct: 262 FPVDVIYNHPDDLEADRDQMIVDCLQDIHHNQKAGDVLIFLSGEREIREVNLAIKRAQLP 321 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 + PLY LSL +Q K +P R++VL+TN+AETSLT+ GIR V+D + RV+R+ Sbjct: 322 HTEVVPLYARLSLAEQSKIF--SPHRGRRIVLSTNVAETSLTVPGIRYVIDTGRARVSRY 379 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 RT + RL + +SQAS QRAGR GR+ G+ L ++E E A ++PEI++++L+ Sbjct: 380 SFRTKVQRLPIEAISQASANQRAGRCGRIADGVCYRLYSEEDFEGRPAFTDPEIVRTNLA 439 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGND 417 +++++LQ D ++D P + +LL+ L A+ E +LS G+++ + D Sbjct: 440 AVILQMLQLRIGDIRNFPFVDPPDSRMISDGFKLLEELQAVTEDGKLSNLGKRLVNIPLD 499 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL 476 PR A ML+ + + A I L + PR +D A ++ WQ+ + + L Sbjct: 500 PRFARMLLESAKNGCLAEVMIITTGLSIQDPRERPADKQQAADQSHKKWQEPNSDFVSLL 559 Query: 477 NVRG 480 N+ Sbjct: 560 NLWR 563 >UniRef50_C0QAN7 HrpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAN7_DESAH Length = 1333 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 160/501 (31%), Positives = 260/501 (51%), Gaps = 23/501 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRL 59 + LP+ E++ AL V++S TG+GK+T +P +A G GKI +PRR+ Sbjct: 74 LPELPITGKKDEIIHALKFHRVVIISGETGSGKTTQIPKFCMAAGRGAAGKIGCTQPRRI 133 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA VA R+AE L + PG VG+++R + ++ ++++T+G+L Q DP L+ Sbjct: 134 AAITVAARIAEELGQLPGGVVGHKIRFDDRSSKDSIIKIMTDGILLAETQHDPFLNEYDT 193 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I+DE HERSL D L +L ++ + R DL L++ SAT+D ++ + APV+ GR Sbjct: 194 IIVDEAHERSLNIDFTLGILRNLVRK-RPDLTLVVTSATIDTEKFSKAFDNAPVIEVSGR 252 Query: 180 SFPVERRYLP-------LPAHQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQ 231 FPVE RY P Q + +A A A E+ RQ G +L+F+P +I+ E Sbjct: 253 MFPVELRYAPIDDPDNDDLDDQGYVEAAAGAVDEIQRQSRTGDILVFMPTERDIEETIEL 312 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 + R L+ PL+ LS DQ + RK++++TN+AETSLTI GI+ VVD Sbjct: 313 IQGRKYPGTLVLPLFARLSARDQARVFSRGVG--RKIIVSTNVAETSLTIPGIKYVVDSG 370 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R+ + PRT T L +S++S QR GR GR+ GI + L +++ E + PE Sbjct: 371 LARILHYSPRTRTTALPVSPISRSSANQRMGRCGRVANGICIRLFSEDAFESRPLFTSPE 430 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-------- 403 IL+S+L+ +++ ++ + A ++D P ++ L LGA++ R Sbjct: 431 ILRSNLAEVILRMISLKLGNVAAFPFIDPPAPKSIKDGFDTLVELGAIQQRRGKNNQRGG 490 Query: 404 --LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSR 460 L+ +G+ MA + DP+L+ +L+ A ++ A I + L PR D + Sbjct: 491 YALTTRGRVMAKIPVDPKLSRILLEADHNGCLDEAVVIVSALSIADPRQRPKDKVQHADQ 550 Query: 461 NQPAWQQRSQQLLKRLNVRGG 481 A++ S + LN+ Sbjct: 551 MHAAFKDPSSDFVTLLNIWKA 571 Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 480 GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLL 537 GG ++L +LAG A+ IA+++ ++ Y G A + L S W++A Sbjct: 643 GGPFYTALHKSILAGYLAN-IAQKKEKNN-YTATKGRAATIFPGSGLYNSGGSWIVAAEF 700 Query: 538 LQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV 595 ++ + ++D L + +L+ ++ T W+ +G + A ++ + L + Sbjct: 701 VETTK---LFARGVAIIDPQWLEETGQELLTRTWSTPRWEKQRGEVVATEQISLFGLVI 756 >UniRef50_C9ZMN0 ATP-dependent RNA helicase, putative n=4 Tax=Trypanosoma RepID=C9ZMN0_TRYBG Length = 742 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 293/633 (46%), Gaps = 74/633 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 ++LPV EL + VL TG+GK+T +P + + + G ++ +PRR+AA Sbjct: 81 TTLPVYQRAKELTQNMRDHQVVLFVGETGSGKTTQVPQFI-SEMELPGVVVCTQPRRIAA 139 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+A ++ + G+ VGYR+R ++ V T+L +T+G+L R D +LS + +V+ Sbjct: 140 MSIAVRVAAEMDVQLGEEVGYRVRFKSMVSDKTKLLYMTDGMLLREAFSDRDLSRISVVV 199 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER+++ D+ L +L + R D +L++MSATLD +R Q P+AP++ EGR + Sbjct: 200 VDEAHERTVETDVLLGVLR-LLMQRRQDFRLVVMSATLDMERFQAYFPKAPLIQVEGRMY 258 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ-------EQLAS 234 V+ Y +P + V L + G +L FL G EI+R E L + Sbjct: 259 DVQVLYSTVPVKDYVEACVERVCDIHLNEPPGDILCFLTGEAEIERAVSRTKLKLEHLLA 318 Query: 235 RIGSDV---------LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 G+ V + PLYG+L ++DQ + A + RK++ ATNIAETSLTI+GI Sbjct: 319 DDGNTVSSNGAQLLARVLPLYGSLGVDDQGRVFSNAGKNTRKIIFATNIAETSLTIDGIV 378 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 VVDC + + ++ + L+ +S+AS QR GRAGR PG L + Sbjct: 379 YVVDCGYHKQSLYNAEARVDYLLPAVISKASAEQRKGRAGRTRPGKCFRLFQQSDFSSFP 438 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RL 404 Q+ PE+L+S++ ++ LL+ ++P Q +++D P +++ A L + GA++ + +L Sbjct: 439 NQTHPEVLRSNMINTVLLLLKLDVTNPYQFAFIDPPSQQSVMDAYCQLSLFGAVDDDLQL 498 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQP 463 + G+ MA D LA +L+ + AA AA I A+LE + + G+ + Sbjct: 499 TDFGRLMADFPVDACLARVLMRSAQYGCAADAAVIVAMLETRNVLVRPASRGIEAEQKHV 558 Query: 464 AWQQRSQQLLKRLNV--------------------------------------------- 478 ++ L V Sbjct: 559 MFRHPDGDHLTLFKVFHAFWRSGQSSQYCFDNFLAYQALQQAVNVYTQLTKLMKKKNICF 618 Query: 479 ------RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA-NGMGAMLDAND--ALSRH 529 R G+ DS I + F ++A + Y+ + L + ++S Sbjct: 619 VSTYDDRSGKLDSVAIRKAVLEGFFTQVAYKPPGGELYKTVRDSQMVALHRHSFPSMSGS 678 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQR 562 I L+ I +A ++ + L++ Sbjct: 679 PSWIVYDRLEVQGQGGTFIRVASAIEPEWLLEV 711 >UniRef50_Q482P9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=Q482P9_COLP3 Length = 1375 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 162/513 (31%), Positives = 259/513 (50%), Gaps = 38/513 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LP++ ++ A+D V+++ TG+GK+T +P L G++G I +PRR+AA Sbjct: 98 GLPISENAAQISAAIDANQVVIIAGETGSGKTTQIPKICLELGRGVDGLIGHTQPRRIAA 157 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+AE L K G+ VGY++R + V + ++++T+G+L +QRD L +I Sbjct: 158 RTVANRIAEELGTKLGEQVGYKVRFNDQVSEQSYIKLMTDGILLAEMQRDRLLLKYDTII 217 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVIS 176 +DE HERSL D L L + R DLKL+I SAT+D R + AP++ Sbjct: 218 IDEAHERSLNIDFILGYLKQILIK-RPDLKLIITSATIDPQRFAKHFSSKNGLPAPIIEV 276 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAV------------ATAEMLRQESGSLLLFLPGVGE 224 GR+FPVE RY PL DD A E+ +G +L+FL G E Sbjct: 277 SGRTFPVEMRYRPLNDRAVIDDDDQSPQEVDIISGILSAVDELSDCGNGDILVFLNGERE 336 Query: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 I+ L + PLY L++++Q + P R +VLATN+AETSLT+ GI Sbjct: 337 IRDTAAALVKANLRHTNVLPLYARLTVSEQNQIFK--PHSGRNIVLATNVAETSLTVPGI 394 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 + V+D R++R+ RT + RL + VSQAS QR+GR GR+ GI + L +++ + Sbjct: 395 KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRSGRCGRVSEGICIRLYSEDDYKSR 454 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG--- 401 A ++PEIL+++L+ +++++ D A +++ P N+ RLL+ + A+E Sbjct: 455 AEFTDPEILRTNLATVILQMHALDLGDIANFPFVEAPDNRNITDGVRLLEEIAAVESIEN 514 Query: 402 -------------ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPP 447 +L+ G+ +A DPRLA M+VS+ I + L + P Sbjct: 515 ADKNAKGKASSTATQLTKSGRLLAKFPIDPRLAKMVVSSIEFGCIEQILIIVSALSIQDP 574 Query: 448 RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 R + ++ +S + LN+ Sbjct: 575 RERPHEKQQLSDEKHNRFKDKSSDFISLLNLWQ 607 Score = 44.5 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 455 GVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSL--IAPLLAGAFADRIARRRGQDGRYQL 512 + + + P QQ + E DS+L + L I + + ++ Y+ Sbjct: 658 SIDYQFSMPNVQQGQAASTAVDKTKETEQDSALTPVHQALLSGLLSHIGQ-QDENREYKG 716 Query: 513 ANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 A GM + AL +WL++ L++ S + +D L LV+++ Sbjct: 717 ARGMKFFIFPGSALTKKSPKWLMSAELVETSR---LFARMNAKIDPLWLEPLAQHLVKRN 773 Query: 571 -DTVEWDDAQGTLKAWRRLQIGQLTVKVQ 598 W+ QG + A+ ++ + L++ + Sbjct: 774 YSEPHWEKKQGAVMAFEQVTLYGLSIVSK 802 >UniRef50_B5JKC1 ATP-dependent helicase HrpA n=5 Tax=Bacteria RepID=B5JKC1_9BACT Length = 1500 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 161/503 (32%), Positives = 260/503 (51%), Gaps = 22/503 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRL 59 LP++ E+++A+ ++L+ TG+GK+T +P LL KI +PRR+ Sbjct: 24 PELPISQRRDEIVSAIQAHQTIVLTGETGSGKTTQIPKMLLDAGYARSGKKIACTQPRRV 83 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VA+R++E L + G VG ++R + TR++ +T+G+L I DP + Sbjct: 84 AALSVAKRVSEELGVEFGQEVGAKIRFTDQTSKKTRVKFMTDGMLLTEIHADPLMRDYDA 143 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI+DE HERSL D L L ++ R DLK++I SAT+D D+ AP++ GR Sbjct: 144 VIIDEAHERSLNIDFLLGHLNQLR-ARRPDLKIVITSATIDTDKFSTAFDHAPIIEVSGR 202 Query: 180 SFPVERRYLPLPA------HQRFDDAVAVATAEMLRQ--ESGSLLLFLPGVGEIQRVQEQ 231 +PV+ Y PL + + +A +T + + SG +L FLP +I+ + Sbjct: 203 VYPVDIIYAPLDELLEDSGDYTYLEGIAESTQRIQDEFGPSGDILAFLPTEKDIREAMDL 262 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L R G + + P +G LS DQ++ +P+ RK++LATNIAETSLTI GIR V+D Sbjct: 263 LEDRFGRRLEIIPCFGRLSNADQQRIFQTSPK--RKLILATNIAETSLTIPGIRFVIDTG 320 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R++R++PR RL ++SQ+S QR+GR GR+ GI + L +++ + S PE Sbjct: 321 LARISRYNPRGRTKRLPITKISQSSANQRSGRCGRVADGICIRLYSEKDYQSRDIYSTPE 380 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--------EGER 403 I +++L+ +++ +L ++D P + A +LLQ LGAL E + Sbjct: 381 IQRANLADVILRMLASRLGHVETFPFIDPPTPAAITAGYQLLQELGALKPPRTQNPEPKT 440 Query: 404 LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQ 462 L+ G+++A L DP + ML+ A + IA+ L + PR D A + Sbjct: 441 LTQTGRQLARLPADPTVGRMLLEANRHNVTHEVLVIASALSIQDPRERPMDREAAARQAH 500 Query: 463 PAWQQRSQQLLKRLNVRGGEADS 485 + L LN+ D+ Sbjct: 501 AQFDHPHSDFLTLLNIWEALHDN 523 >UniRef50_A6C1G8 ATP-dependent helicase HrpA n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C1G8_9PLAN Length = 1334 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 185/706 (26%), Positives = 310/706 (43%), Gaps = 95/706 (13%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLP+ L + ++ V++ TG+GKST LP LL+ GI+G I +PRR+AA Sbjct: 92 SLPIHQELATIQKTIEENQVVIVCGETGSGKSTQLPKLLLSMGRGISGIIGHTQPRRIAA 151 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R++E L + G G+++R + PNT ++++T+G+L Q D L+ +I Sbjct: 152 RSVAARISEELGREQGTACGFKIRFTDTTNPNTYIKLMTDGILLAETQTDSFLNQYDTII 211 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVISE 177 +DE HERSL D L L + R DL+++I SAT+D +R + AP++ Sbjct: 212 IDEAHERSLNIDFLLGFLKRLLPKRR-DLRVIITSATIDAERFSEHFAGSEGPAPILNVS 270 Query: 178 GRSFPVERRYLPLPAH------------------QRFDDAVAVATAEMLRQESGSLLLFL 219 GR++PVE RY P + +A A E+ + G +L+F+ Sbjct: 271 GRTYPVEIRYRPFDDEPAGKEAGKETGNKSQNSSRDEQSQLADAVNELAAIDDGDILIFV 330 Query: 220 PGVGEIQRVQEQLASRI------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATN 273 +I+ + L R G + PLYG LS +Q K P R++V+ATN Sbjct: 331 ATEWDIRETAKLLRGRSIIGDDGGRQTEIVPLYGRLSTAEQNKVFR--PSSYRRIVIATN 388 Query: 274 IAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISL 333 +AE+S+T+ GIR V+D R++R+ R+ + RL + VSQAS QRAGR GR+ PGI + Sbjct: 389 VAESSITVPGIRYVIDTGLARISRYSSRSQVQRLPIEAVSQASANQRAGRCGRVAPGICI 448 Query: 334 HLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLL 393 L ++ + + PEIL+++L+ ++++ L + ++D P + L Sbjct: 449 RLYSEADYKSRDEFTSPEILRTNLASVILQTLNMRLGAIEEFPFIDPPKPTAIRDGYSTL 508 Query: 394 QMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGN 451 LGA++ + RL+ G+K++ L DPR+A M+++A +++ IAA LE + PR Sbjct: 509 FELGAIDEQNRLTDIGRKISRLPVDPRIARMILAAHDENCLHEILIIAAALELQDPRERP 568 Query: 452 SDLGVAFSRNQPAWQQRSQQLLKRL----------------------------------- 476 + A ++ L L Sbjct: 569 IEKQQAADEAHEQFRDPDSDFLSFLKLWDFYHKLKEEQSHSKLRRACVQNFLSYNRLREW 628 Query: 477 ----------------NVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAML 520 + DS+ I L IA R Y A L Sbjct: 629 ADIFRQLRQLVEESGIKPHPRKDDSAAIHRALLPGLLSNIAMRSDSH-EYTGAGQQKYFL 687 Query: 521 DANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWD- 576 + + +W+I+ L++ S + + + + P LV++S W+ Sbjct: 688 WPGSGIFEKKPKWIISAELIETSKRYARTV---AKISPNWIEPAAPHLVKKSWSDPRWNG 744 Query: 577 DAQGTLKAWRRLQIGQLTVKVQPLA--KPSEDELHQAMLNGIRDKG 620 +A + A + G V + + K + +L +G Sbjct: 745 EAASAVAAEKVTLFGLTIVPRRSVHYGKIDPEHSRTLLLQYGLVEG 790 >UniRef50_P20095 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 n=11 Tax=Saccharomycetaceae RepID=PRP2_YEAST Length = 876 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 160/526 (30%), Positives = 252/526 (47%), Gaps = 21/526 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING---KIILLEPRRLA 60 LPV ELL + +++ TG+GK+T LP L+ + +I + +PRR+A Sbjct: 223 LPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAITQPRRVA 282 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGL 119 A +VA R+A+ +N G VGY++R ++ PN T L+ +T+G+L R D +LS Sbjct: 283 ATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDSKLSKYSC 342 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER+L D+ + LL D+ R LKLLI SAT++ + + P+ GR Sbjct: 343 IMIDEAHERTLATDILIGLLKDILPQ-RPTLKLLISSATMNAKKFSEFFDNCPIFNVPGR 401 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIGS 238 +PV+ Y P A+ Q G +L+FL G EI+R + +L + Sbjct: 402 RYPVDIHYTLQPEANYIHAAITTIFQIHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSK 461 Query: 239 ------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +++ P+Y L Q K P P+ RKVVLATNIAETSLTI+GIR V+D Sbjct: 462 LGSRTKQMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGF 521 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPE 351 + + P TG+T+L+T S+AS+ QRAGRAGR+ PG + K +PE Sbjct: 522 VKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRVGPGKCFRIFTKWSYLHELELMPKPE 581 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQK 410 I +++LS ++ LL G +D + +D+P + L + L +LGAL + ++ G+ Sbjct: 582 ITRTNLSNTVLLLLSLGVTDLIKFPLMDKPSIPTLRKSLENLYILGALNSKGTITRLGKM 641 Query: 411 MAALGNDPRLAAMLVSAKND----DEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ 466 M +P A +L +A I ++L E P + +G Sbjct: 642 MCEFPCEPEFAKVLYTAATHEQCQGVLEECLTIVSMLHETPSLF---IGQKRDAAASVLS 698 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + + L + +S R ++ R QL Sbjct: 699 EVESDHILYLEIFNQWRNSKFSRSWCQDHKIQFKTMLRVRNIRNQL 744 >UniRef50_C8RUP0 Probable ATP-dependent rna helicase protein n=2 Tax=Corynebacterium jeikeium RepID=C8RUP0_CORJE Length = 683 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 239/734 (32%), Positives = 344/734 (46%), Gaps = 77/734 (10%) Query: 96 LEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDD----LK 151 ++ VT GVL + DP L GVG V++DE HER L +DL LA+ +V D L Sbjct: 1 MDFVTPGVLLNRLLADPALEGVGAVLIDEVHERQLDSDLVLAMCQEVAMLREGDPTEELY 60 Query: 152 LLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQ- 210 L MSAT+D +L + + A VV + + P+E Y P P + A A++ +Q Sbjct: 61 LCAMSATVDTQKLAEYMG-AQVVSTPAVTHPLEISYHPHPERAQGSPAFYRHVAKLAQQA 119 Query: 211 -----ESGSL----LLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPA 261 ESG L+F+PG EI V L PL+G+L+ +Q A+ Sbjct: 120 IDNQRESGHADHRTLVFVPGRKEIDWVCTHLPDAA-------PLHGSLTSQEQDAAL--- 169 Query: 262 PQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRA 321 G +V+AT+IAE+SLT+ G+ V+D R R D G++ L+T S+AS QRA Sbjct: 170 -TGDSPIVVATSIAESSLTVPGVHAVIDAGLSRTPRRDQARGMSGLVTTSTSRASADQRA 228 Query: 322 GRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQP 381 GRAGRL PG + A PEIL SDL + L WG D S LD P Sbjct: 229 GRAGRLGPGQVYRAYSAADYSHFAPDITPEILSSDLVAAALTLAAWGSPDI---SLLDAP 285 Query: 382 PVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIA 440 P L A + L LGAL+ + ++ GQK+A + DPRL A L+ A A A +A Sbjct: 286 PAATLTVAHQELHYLGALDSKGSITELGQKLARIPADPRLGAALL-AHGSGAAKVVAALA 344 Query: 441 AILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRI 500 L+ A + ++R + ++ ++A A+ DR+ Sbjct: 345 TGLQGDL----------------AEAKPPASEVRRFARMVNDHGTATPGDIVASAYPDRV 388 Query: 501 ARRRGQDGR---YQLANGMGAMLDAN--DALSRHEWLIAPLLLQGSASPDARILLALLVD 555 A+ G D Y LA+G A L LS EWL + G I A Sbjct: 389 AKLVGTDADQAVYLLASGTRATLAPELRRTLSGSEWLAVAEVQLG---RTPLIRAAAS-- 443 Query: 556 IDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQP--LAKPSEDELHQAML 613 L Q P +++ T +G L+A R +G + + P +++ SE + HQA+ Sbjct: 444 ---LQQPSPSQIREDVTAHI--TEGKLRARRTRHLGAIELSSTPVSVSELSEADRHQAV- 497 Query: 614 NGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVH 673 + +GL L T A ++ R+ + L E WP + P V Sbjct: 498 AALAAEGLGWLQMTEGASIVKERVDYLRQQLGE-PWPDLATGD--------YTPEAERVV 548 Query: 674 SLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQE 733 + + +D YQA+ L W R+D +P VP+GS I Y P + V++QE Sbjct: 549 AGERIVDIDAYQAIMRQLPWPEAGRMDELVPERLEVPSGSAPKIGYETGR-PIVRVKLQE 607 Query: 734 MFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWP 793 FG A +PTIA +V + LLSPA R L +T DL FW G Y+ V+K+M+GRYPKH WP Sbjct: 608 CFGLAESPTIAGKKV--LFHLLSPAGRELAVTDDLKSFWDGPYQGVRKDMRGRYPKHPWP 665 Query: 794 DDPANTAPTRRTKK 807 +DP + T++TK+ Sbjct: 666 EDPWSATATKKTKR 679 >UniRef50_C5C946 ATP-dependent helicase HrpB n=2 Tax=Micrococcus luteus NCTC 2665 RepID=C5C946_MICLC Length = 893 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 285/878 (32%), Positives = 403/878 (45%), Gaps = 78/878 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL---LAHPGINGKIILLEPRR 58 + L AA LP+L ALD ++ AP G GK+T +P L LA G G++++ +PRR Sbjct: 23 AGLTFAAALPDLEAALDARGVAVVEAPPGTGKTTVVPPALVVRLADRG-GGRVLVTQPRR 81 Query: 59 LAARNVAQRL-----AELLNEKPGD-----------TVGYRMRAQNCVGPNTRLEVVTEG 102 +A R +RL A + +PG VGY +R G + +E VT G Sbjct: 82 VAVRAAWRRLRTAVLAAAADVQPGADPDAQARLGDAAVGYAVRGDAAGGGASAVEFVTPG 141 Query: 103 VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND 162 +L R + DP L GV V+LDE HER L D+ ALL D++Q LR +L L+ MSAT+D Sbjct: 142 LLLRRLLADPGLDGVDAVVLDEVHERDLDTDVLFALLADLRQ-LRPELALVAMSATVDAA 200 Query: 163 RLQQMLPEA-------PVVISEGRSFPVERRYLP-----LPAHQRFDDAVAVATAE---- 206 L PVV + P+ + P L A R D A A Sbjct: 201 ALAARWARGMGEDAPLPVVSTPAVLHPLREEHAPFRGHRLTAEGRVDRAFLDHVAATAAR 260 Query: 207 -----MLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAIL-P 260 + S L+FLPGV E++ V ++A+ + D + L+G DQ A+ Sbjct: 261 AHAEALDADPSVDALVFLPGVAEVETVAGRVAA-LAPDTEVRVLHGRQEPADQDAALAGR 319 Query: 261 APQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQR 320 + +VV+AT +AE+SLT+ G+RLVVD R R D G+ L+T + S+A+ QR Sbjct: 320 TDPAVPRVVVATAVAESSLTVPGVRLVVDSGLAREPRRDRGRGMDGLVTVQASRAAAGQR 379 Query: 321 AGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQ 380 AGRA RL PG + A A P + DL+ + + WG ++ + Sbjct: 380 AGRAARLGPGTVVRCHTAAALGTAPAAPTPALAVVDLAPVALAFAAWGAPGGRGLTLPED 439 Query: 381 PPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKI 439 PP + AA+R L LGA++ + R++ G +A L DP L L+ A AA+ Sbjct: 440 PPADAMAAAERTLASLGAVDADGRITPHGAVLAELPLDPPLGHALLRAAPWTGPRPAAEA 499 Query: 440 AAILEEPPRMGNSDLGVAF------SRNQPAWQQRSQQLLKRLNVRGGEADSSLIAP--- 490 A L R +DL + +R L+RL R P Sbjct: 500 TAALALDLRAPGADLEALVAAVRDGRHPEAGRWRREADRLERLARRHAHHAPDEPGPEAA 559 Query: 491 ----------LLAGAFADRIARRRGQDGRYQLANGMGAMLDAND---ALSRHEWLIAPLL 537 + A AF IARR G+ G Y LA+G A L + L+ EWL + Sbjct: 560 ATARRHPAGLVAAQAFPAWIARRAGEAGAYLLASGTRAALPRDAVGGGLAGQEWLAVAEV 619 Query: 538 LQ---GSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLT 594 + +A A I A +D L + DT +W L R ++G L Sbjct: 620 ARVAGDAAGAGAVIRAAAPIDRSLAELAGAGLRRTEDTADW--RGDRLTGRRVDRLGALV 677 Query: 595 VKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 + P A + D QA+ + GL+ + + AE+LR R+ + L WP + D Sbjct: 678 LAETP-ASVAPDAAAQAVRAALAADGLARFDPSGRAERLRRRVHLLHRVLG-APWPDLSD 735 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSR 714 +L L + + + R L LD LRG L W RLD P VP+G Sbjct: 736 AAL-PGLGALVDGFAADLAAGRPLTRLDAEALLRGALPWPEAGRLDELAPERLPVPSGRA 794 Query: 715 IAIRY---HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 + + Y HED PP +A ++QE FG P +A GR P+VL LLSPA RPL +T DL F Sbjct: 795 VVVDYPAVHEDTPPVVAAKLQEFFGARVTPAVADGREPVVLHLLSPAGRPLAVTADLPSF 854 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 W G Y +V+ E +GRYPKH WP+DPA PT RT + + Sbjct: 855 WAGPYAQVRAENRGRYPKHPWPEDPAAAEPTARTNRRA 892 >UniRef50_D0WKL4 ATP-dependent helicase HrpA n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WKL4_9ACTO Length = 1331 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 176/499 (35%), Positives = 264/499 (52%), Gaps = 24/499 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 LPV+A E+ A+ V+++ TG+GK+T LP L G + I +PRR+A Sbjct: 14 PDLPVSARRDEIARAIRDNQVVVVAGETGSGKTTQLPKICLELGRGTSAMIGHTQPRRIA 73 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA RLA L G VGY++R V P T ++++T+G+L IQ DPEL+ + Sbjct: 74 ARAVADRLAHELGVDLGAQVGYQVRFTEEVSPGTLVKLMTDGILLAEIQSDPELARYDTI 133 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D R + APVV GR+ Sbjct: 134 IIDEAHERSLNIDFLLGYLARLLP-RRPDLKVIITSATIDTQRFAKHF-NAPVVEVSGRT 191 Query: 181 FPVERRYLPLPAHQRFDDAVAV-----ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +PVE RY PL + V A E++ + G +L+FL G GEI+ Q A Sbjct: 192 YPVEIRYRPLVGDDGGEATDQVSGIVEACEELMAEGPGDILVFLSGEGEIRDAQAAFADE 251 Query: 236 IGSD-------------VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 +G V + PLY LS +Q + P R+++LATNIAETSLT+ Sbjct: 252 LGRRHIEPGGRSSVPDAVEVLPLYSRLSAAEQHRIFERRPH--RRIILATNIAETSLTVP 309 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GIR VVD R++R+ RT + RL + +SQAS QRAGR+GR+ GI + L ++E + Sbjct: 310 GIRYVVDPGTARISRYSARTKVQRLPIEPISQASANQRAGRSGRVADGICIRLYSQEDFD 369 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE 402 ++PEI ++ L+ +++++L G + A ++D P + A +LL +GA++G Sbjct: 370 GREKFTQPEIQRTSLASVILQMLALGLGNVADFPFIDPPEERAVRAGAQLLTEIGAIDGA 429 Query: 403 RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRN 461 RL+ G+++A L DPRL ML+ A + A+ + A L + R ++ + Sbjct: 430 RLTPVGRRLARLPIDPRLGRMLLEADKNGCASEVLVLVAALSVQDVRERPAEKRPQADQL 489 Query: 462 QPAWQQRSQQLLKRLNVRG 480 + RS L L + Sbjct: 490 HARFTARSSDFLAYLTLWR 508 >UniRef50_UPI000186CCEB ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CCEB Length = 695 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 148/527 (28%), Positives = 251/527 (47%), Gaps = 17/527 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 LPV L+ ++ +++ TG GK+T +P + + I + +PRR+AA Sbjct: 63 GLPVYNARQRLINLIEKHEILIIIGETGCGKTTQIPQFIFEERINGSKMIGVTQPRRVAA 122 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++ R+AE +N G+TVGY +R ++ NT+++ +T+G+L R D +L +I Sbjct: 123 TTLSARVAEEMNTVLGETVGYSIRFEDLTSHNTKIKFLTDGMLLREAILDDKLMQYNFII 182 Query: 122 LDEFHERSLQADLALALLLDVQQGLR----DDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ D+ ++ + + LK++IMSAT+D D + PVV E Sbjct: 183 LDEAHERTIHTDVLFGIIKKAHKTRKERGLPILKVIIMSATMDVDHFSSYFGDVPVVYLE 242 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESG-SLLLFLPGVGEIQRVQEQLA--- 233 GR + VE + ++ +L+FL G EI+ ++ Sbjct: 243 GRQYSVEVLHAVQSQDDYLFSSLVTVFQIHQEAPPNEDILVFLTGQEEIESFAFKVKSIV 302 Query: 234 ---SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + + + PLY +L +A P P G+RK+V++TNIAETS+TI GI+ V+D Sbjct: 303 KDLENMTPPLKVLPLYSSLPSLQLAEAFKPTPHGLRKIVISTNIAETSVTIPGIKYVIDS 362 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 + + F+P TGL L + +SQA QR+GRAGR G + K++ ++ S+P Sbjct: 363 GKVKAKMFNPITGLDMLQVRTISQAQAWQRSGRAGRDSSGHCYRIFTKDEFDKFDKNSQP 422 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG---ERLSAQ 407 EIL+ +L+ + ++LL G + ++D+PP +L +A L++LGA++ +L+ Sbjct: 423 EILRCNLASVSLQLLTLGI-NILNFDFMDKPPKESLKSALTELKLLGAIDCVEKPQLTKL 481 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQ 466 G++MA DPR + +L+SA + I A+L E + + + Sbjct: 482 GKQMAQFPIDPRYSKILLSAIDYGCLDEIITIIALLSGESVLIHSLTKRDEAKEAHKKFL 541 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 S + LNV S F + R QL Sbjct: 542 SSSGDHITLLNVFRNFKKMSQQKQWCHENFLHFRNLVYASNVRKQLV 588 >UniRef50_A5DRX8 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DRX8_LODEL Length = 1141 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 151/559 (27%), Positives = 247/559 (44%), Gaps = 46/559 (8%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP--------------GIN 48 SLP AV +++ + ++ TG+GK+T L L G+ Sbjct: 418 SLPAFAVKDDVVATIRDNQVTIIIGETGSGKTTQLTQYLYEAGLAHNADEAGQGSGLGVA 477 Query: 49 GK----IILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVL 104 G+ I +PRR+AA +VA+R++E + K G VGY +R + +T ++ +TEG+L Sbjct: 478 GQEKKMIACTQPRRVAAMSVAKRVSEEMGVKLGAEVGYSVRFDDKTSNSTLIKYMTEGIL 537 Query: 105 TRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRL 164 R I DP L +I+DE HERSL D+ L L + R DLKL++ SAT++ DR Sbjct: 538 LREILADPLLLDYSCIIMDEAHERSLNTDILLGLFKGLL-ARRRDLKLIVTSATMNADRF 596 Query: 165 QQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE--------SGSLL 216 + AP GR+FPV+ + + + AV + L G +L Sbjct: 597 TRFFGAAPQFTIPGRTFPVDVYFNRNVSMDYVESAVKQILSIHLGSMAGKLEFVNDGDIL 656 Query: 217 LFLPGVGEIQRVQEQLASRI-----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLA 271 +F+ G +I+ + L ++ + + P+Y + Q+K RKVV+A Sbjct: 657 VFMTGQEDIEITCDILCEKLAMLENPPPLDVLPIYSTMPPEMQKKIFRKKNLARRKVVVA 716 Query: 272 TNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGI 331 TNIAETSLT++GI+ V+DC +V ++P+ G+ L VS A+ QR+GRAGR G+ Sbjct: 717 TNIAETSLTVDGIKYVIDCGLVKVKVYNPKLGMDTLQVVPVSLANADQRSGRAGRTSAGV 776 Query: 332 SLHLIAKEQAE--RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAA 389 + L + AQ PEI +++LS ++ L D +LD PP L + Sbjct: 777 AYRLYTENATSSKCMYAQPIPEIQRTNLSNTMLLLKSLNVKDINNFPFLDPPPKDLLNCS 836 Query: 390 KRLLQMLGALE-GERLSAQGQKMAALGNDPRLAAMLVSA--KNDDEAATAAKIAAILEEP 446 L + AL+ L+ G +M +P L+ +++ + + I A+L Sbjct: 837 LYDLWAIDALDNYGELTKLGLEMVQFPIEPTLSKLILLSTQPEFHCSEDIVTIVAMLSVS 896 Query: 447 P-RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEA--------DSSLIAPLLAGAFA 497 + + + + L LNV + + + F Sbjct: 897 NIFFRSKERAKESDLAREKFVVADSDHLTLLNVYTQWEVNVKKFGNNWTKLTQWCEKNFL 956 Query: 498 DRIARRRGQDGRYQLANGM 516 + R ++ R QL M Sbjct: 957 QLKSLHRAKEIRRQLVQIM 975 >UniRef50_B6BTD8 ATP-dependent helicase HrpA n=2 Tax=Betaproteobacteria RepID=B6BTD8_9PROT Length = 1223 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 143/486 (29%), Positives = 250/486 (51%), Gaps = 12/486 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 S LP+ + ++ + ++ TG+GK+T LP + G N I +PRR+A Sbjct: 7 SPLPILENIDQVAKIIKNNQVTIICGETGSGKTTQLPKICIKIGRGKNKIIGHTQPRRIA 66 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+A+ L G+ VGY++R + +T+++++T+GVL Q DP L + Sbjct: 67 ARSVATRIAQELETSIGNEVGYKVRFTDKTSSHTKIKLMTDGVLLAETQSDPLLKRYDTL 126 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D + + + R DLK++I SAT+D D+ + AP + GR+ Sbjct: 127 IIDEAHERNLNIDFLIGFIKQLLPK-RPDLKIIITSATIDADKFSKHFDGAPTLEISGRT 185 Query: 181 FPVERRYLPLPAHQR-----FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 FPVE Y P+ + +++V E+ R+ SG +L+FLPG +I ++ L Sbjct: 186 FPVETLYRPMKNIEEEDVLSIEESVYEVIQEIGRK-SGDILVFLPGEKDIHDIRRYLNEM 244 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + D + PL+ L + DQ+K + + ++++LATNIAETSLT+ I+ V+D RV Sbjct: 245 LNHDYEVLPLFSRLPVPDQQKIFTTSTK--KRIILATNIAETSLTVPNIKFVIDSGLARV 302 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 R++PR + +L+ +++SQA+ QR GR GR+ PG+ L ++ + + ++PEI++S Sbjct: 303 VRYNPRLRIEQLLIEKISQAAANQRTGRCGRIAPGVCYRLYDEDDFKNRSEYTDPEIMRS 362 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAAL 414 L+ +++ + D ++D P + LL L A+E R ++ G+ MA + Sbjct: 363 SLASVILRMASLNLGDVEVFPFIDAPFKKFIQDGYDLLFELHAVEKNRAITELGRTMAQI 422 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 DP + +++ A N + I A + P D + Q + + Sbjct: 423 PIDPVFSRIIIEASNQHCLSEIIPIIAAISVADPIERPFDKLEEAEKAQMNFHDPRSGFM 482 Query: 474 KRLNVR 479 + Sbjct: 483 SFYRLW 488 >UniRef50_A5AMC2 Putative uncharacterized protein n=2 Tax=Eukaryota RepID=A5AMC2_VITVI Length = 855 Score = 554 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 157/514 (30%), Positives = 233/514 (45%), Gaps = 37/514 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKIILLEPRRLAA 61 LP+ +V ELL + V++ TG+GK+T L Q L G NG + +PRR+AA Sbjct: 197 LPIYSVREELLQVIRENQVVVVVGETGSGKTTQL-TQYLHEDGYTTNGIVGCTQPRRVAA 255 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + + GD VGY +R ++ GPNT+++ +T+GVL R +D EL +V+ Sbjct: 256 MSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTKIKYMTDGVLMRETLKDSELDKYRVVV 315 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ +L V R D KL++ SATL+ + P+ GR+F Sbjct: 316 MDEAHERSLNTDVLFGILKKVVAQRR-DFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTF 374 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVL 241 PV Y P + AV A M S L+ P Sbjct: 375 PVNILYSKTPCEDYVEGAVKQA---MTGCLSSQYSLYTP--------------------- 410 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 L + Q K A G RK ++ATNIAETSLT++GI V+D ++ ++PR Sbjct: 411 ------QLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPR 464 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQSDLSGL 360 G+ L VS+A+ QRAGRAGR PG L + A PEI +++L + Sbjct: 465 MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNELLASPVPEIQRTNLGNV 524 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 ++ L + ++D PP N+L + L +LGAL L+ G KM DP Sbjct: 525 VLLLKSLKIENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPP 584 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 LA ML+ + + I ++L P D + + L LNV Sbjct: 585 LAKMLLIGEQLECINEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNV 644 Query: 479 RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + F R+ ++ R QL Sbjct: 645 YQQWKANQYRGDWCNDHFLHVKGLRKAREVRSQL 678 >UniRef50_A5DQ95 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DQ95_PICGU Length = 1084 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 151/540 (27%), Positives = 247/540 (45%), Gaps = 31/540 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH--------PGINGKIILL 54 SLP AV ELL + ++ TG+GK+T L LL G I Sbjct: 382 SLPAFAVRHELLRTIAENQVTVVIGETGSGKTTQLTQFLLEDGFGSNLAKNGERLMIGCT 441 Query: 55 EPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQN-CVGPNTRLEVVTEGVLTRMIQRDPE 113 +PRR+AA +VA+R++E K G+ VGY +R ++ T ++ +TEGVL R I D Sbjct: 442 QPRRVAAMSVAKRVSEEYGCKLGEEVGYSIRFEDVTTKEKTIIKYMTEGVLLREILMDAN 501 Query: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPV 173 L +I+DE HERSL D+ L L ++ + R DLKL+I SAT++ +R + P Sbjct: 502 LEHYSCIIMDEAHERSLSTDVLLGLFRNLIR-RRKDLKLIITSATMNAERFMNFFGDVPQ 560 Query: 174 VISEGRSFPVERRYLPLPAHQRFDDAVAVATAEM------LRQESGSLLLFLPGVGEIQR 227 GR+FPV+ + D AV ++ G +L+F+ G +I+ Sbjct: 561 FTIPGRTFPVDTLFSKSTCSDYVDAAVKQVMTIHLQNYSKYKRNDGDILVFMTGQEDIEM 620 Query: 228 VQEQLASRI-----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 E + ++ + + P+Y + + QRK + RKVV+ATNIAETSLT++ Sbjct: 621 TCELVREKLALLDDPPPLDVYPIYSTMPADLQRKIFDKPSETRRKVVVATNIAETSLTVD 680 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ-- 340 GI+ VVD ++ ++P+ G+ L +S A+ QR+GRAGR PG++ L + Sbjct: 681 GIKYVVDTGLVKLKVYNPKLGMDTLQVVPISLANAQQRSGRAGRTGPGLAYRLYTERAIG 740 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + Q PEI +++L+ +++ L D + +LD PP L + L ++ AL+ Sbjct: 741 EDSMYIQPIPEIQRTNLTNVMLLLKSLKVEDVTKFPFLDSPPTDLLSNSLYDLWIMEALD 800 Query: 401 -GERLSAQGQKMAALGNDPRLAAMLVSAK--NDDEAATAAKIAAILEEPP-RMGNSDLGV 456 L++ G M + L+ ++ + ++ I ++L P + Sbjct: 801 NCGNLTSLGHNMMVFPIEATLSKLIFLSCRPQFSCSSEIVTIVSMLSVPSVFFRPKERAQ 860 Query: 457 AFSRNQPAWQQRSQQLLKRLNVRG----GEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + + L LNV + A + F + R +D R QL Sbjct: 861 ESDAARERFFVAESDHLTLLNVYNQYETQRSKGRKTAAWCSKNFLHHKSLSRARDIRNQL 920 >UniRef50_A4S4Y0 Predicted protein n=3 Tax=Mamiellales RepID=A4S4Y0_OSTLU Length = 679 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 161/494 (32%), Positives = 255/494 (51%), Gaps = 28/494 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLP+ L+ + + V++ TG+GK+T +P + + I + +PRR+A Sbjct: 41 SLPIYRAKDRLMEEIRKSETVIIIGETGSGKTTQIPQYVYEDMTLTNGLMIGVTQPRRVA 100 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V++R+A+ G VGY +R ++ TR++ +T+G+L R DP LS G++ Sbjct: 101 AVSVSRRVADETGTAHGTLVGYAIRFEDVSSEETRIKFLTDGMLLREAVGDPLLSKYGVI 160 Query: 121 ILDEFHERSLQADLALALLLDVQQGLR------------DDLKLLIMSATLDNDRLQQML 168 ++DE HER+LQ D L + VQ+ R L++++MSATL+ + Sbjct: 161 MIDEAHERTLQTDFLLGTIKGVQRRRRESLGEDQYGRALPPLRVIVMSATLEASSFSKFF 220 Query: 169 PEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 APV+ S GR+FPVE Y P D A+ + +G +L+FL G EI+ + Sbjct: 221 DGAPVIYSRGRTFPVEMFYTEEPEEDYLDAAMWTVLQVNEEEAAGDVLVFLTGQEEIESL 280 Query: 229 QEQLASR---IGSDVL---LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 L + + S+VL + L+ AL +Q K P P G RKVVLATNIAETSLTI Sbjct: 281 GRMLREKASELPSNVLKLNVVLLFAALPPEEQMKVFEPTPLGTRKVVLATNIAETSLTIN 340 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GIR VVD ++ PR+G+ L+ ++Q+ QRAGRAGR PG L +E Sbjct: 341 GIRYVVDSGLSKLRTHHPRSGVDELLVTPIAQSQAQQRAGRAGREAPGKCFRLYTEEIMP 400 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE 402 +PE+L+++LSG++++L D ++D PP LL + LL L AL+ + Sbjct: 401 SLEKYVKPELLRTNLSGVVLQLKAMQVDDILSFPFIDPPPKEALLRSLELLYSLDALDDD 460 Query: 403 -RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN 461 +L+ G+KMA +P A +++A+ + A + ++L +D FSR Sbjct: 461 GKLNDVGKKMARFPLEPMAARCVIAAEIEGCAIETLAVLSMLS-------TDSVFQFSRE 513 Query: 462 QPAWQQRSQQLLKR 475 + ++ LKR Sbjct: 514 ADGQKNVARHKLKR 527 >UniRef50_C5DCP1 KLTH0B04664p n=2 Tax=Saccharomycetales RepID=C5DCP1_LACTC Length = 700 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 249/473 (52%), Gaps = 9/473 (1%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH--PGINGKIILLEPRRL 59 ++LPV +++ ++ +L TG+GKST +P L+ + + +I + +PRR+ Sbjct: 61 ATLPVYKHKDSIMSHINKNQVTILIGETGSGKSTQIPQFLMENFPEKTDKRIAVTQPRRV 120 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA N+A R+A+ + G+ VGY +R N T+L+ +T+G+L R I D LS Sbjct: 121 AAINLASRVAQEYGCRLGERVGYSVRFDNKSNARTKLKYLTDGMLLREIMLDKNLSDYSC 180 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI+DE HER++ DL L L ++ R DLK+++MSATL ++ + AP++ EGR Sbjct: 181 VIIDEAHERTILTDLILGFLKELINSSRQDLKVVVMSATLQAEKFSEFFGRAPILFVEGR 240 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA---SRI 236 FPV+R YL D + ++ G +L F+PG EI + L+ + Sbjct: 241 KFPVQRSYLKAQCDDVVDAIIRCCVQLNQSEQMGDILCFMPGQEEIDKAVAILSKVGEHL 300 Query: 237 GSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 G+ V + PLY AL +Q K P RKVV +TN+AETS+TI G++ VVD Sbjct: 301 GASVPRLVALPLYAALPPAEQAKVFAPVKGFKRKVVFSTNLAETSVTISGVKFVVDSGLR 360 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 +V + + GL L+T +S+AS +QR GRAGR G L ++ ++ Q+EPEI Sbjct: 361 KVKVWRHQLGLATLLTVPISKASASQRTGRAGRESAGKCFRLYREQDYQKLPNQTEPEIA 420 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 +S+++ ++ L + G D SWL+ P +L A + L LGAL+ +++ +GQKMA Sbjct: 421 RSEVTSPILMLKKVGVKDIVNWSWLENPGKQAILMALQELFQLGALDDSGKITNKGQKMA 480 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW 465 L P L+++L+ A D I + L + N N+ + Sbjct: 481 LLPLAPHLSSVLLKAHEDGCLLPVIDIVSCLSVENLLINPSPEQRDEVNEKRF 533 >UniRef50_B2U9W9 ATP-dependent helicase HrpA n=11 Tax=Betaproteobacteria RepID=B2U9W9_RALPJ Length = 1333 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 158/494 (31%), Positives = 257/494 (52%), Gaps = 19/494 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-----HPGINGKIILLEPR 57 +LPV+A E+ A+ V++S TG+GK+T LP L+ G G I +PR Sbjct: 70 ALPVSARRDEIAQAIAANQVVIVSGETGSGKTTQLPKICLSIGRGIGAGGTGLIGHTQPR 129 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AA + A+R+A+ + G+ VG+++R + + ++++T+G+L Q DP L Sbjct: 130 RIAATSTAKRIAQEIGTPVGEHVGFQVRFNDTLSAGASVKLMTDGILLAETQNDPLLRAY 189 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPV 173 +I+DE HERSL D + L + R DLKL+I SAT+D R + APV Sbjct: 190 DTIIIDEAHERSLNIDFLIGYLKQLLP-RRPDLKLIITSATIDAKRFAEHFAGPKGPAPV 248 Query: 174 VISEGRSFPVERRYLPLPAHQ-----RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 + GR +PVE RY P+ + +A+ A E+ R+ G +L+FLPG EI+ Sbjct: 249 IEVSGRLYPVEVRYRPIQRDEKDKERDLYEALVDAVDELAREGPGDVLIFLPGEREIREA 308 Query: 229 QEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 E L + + PL+ LS+ +Q + P R++VLATN+AETSLT+ GIR VV Sbjct: 309 AEALRKHHPAHTEILPLFARLSVQEQERVFR--PSNARRIVLATNVAETSLTVPGIRYVV 366 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D RV R+ R + +L + VSQA+ QRAGR GR+ G+ + L + + Sbjct: 367 DTGLARVKRYSYRNKVEQLQIEPVSQAAANQRAGRCGRVADGVCIRLYDEADFIARPRFT 426 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQ 407 +PEIL+S L+ +++ + +D Q +++ P + +LLQ LGA++ E L+ Sbjct: 427 DPEILRSSLAAVILRMKALRLTDVEQFPFIEPPLGRAIADGYQLLQELGAVDDENALTPL 486 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQ 466 G+++A L DPR+A M+++ ++ IA+ L + PR +L + + Sbjct: 487 GKQVARLPLDPRVARMILAGRDHQCLREMLIIASALSVQDPRERPQELQQQADQAHRQFA 546 Query: 467 QRSQQLLKRLNVRG 480 + L + + Sbjct: 547 DEKSEFLGWVKLWK 560 >UniRef50_B4JQ72 GH13648 n=1 Tax=Drosophila grimshawi RepID=B4JQ72_DROGR Length = 698 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 171/530 (32%), Positives = 258/530 (48%), Gaps = 17/530 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKII-LLEPRRLAA 61 SLPV +L L+ +L+ TG+GK+T +P LL NG II + +PRR+AA Sbjct: 71 SLPVYNCRQRILKELEANDTLLIMGETGSGKTTQIPQFLLQAGYANGGIIGITQPRRVAA 130 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +A+R+A+ L G+TVGY +R ++ TR+ +T+G+L R D L ++ Sbjct: 131 ITIAKRVAQELATGIGETVGYTVRFEDATTERTRIRYMTDGILLREAIGDRLLRKYSAIM 190 Query: 122 LDEFHERSLQADLALALLLDVQ----QGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ AD+ ++ Q + LK++I SAT+D D Q + E Sbjct: 191 LDEAHERTVNADVLFGIVKQAQLERAKQRLPKLKIIITSATMDIDHFGQYFG-VRGMYLE 249 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRI 236 GR+ PV + A+ + + +L+FL G EI+ + +Q+ Sbjct: 250 GRTHPVRVLHAKDSQEDYIHAALVTLFDIHRHEPINHDVLIFLTGQEEIEALAQQIRQLA 309 Query: 237 ------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 SDV + LY L+ Q + LP P RK+VLATNIAETS+TI GIR V+DC Sbjct: 310 RINNTGPSDVRVFTLYAQLAQGKQLECFLPVPANTRKIVLATNIAETSITIPGIRCVIDC 369 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 + F+P TGL L T R+SQA QR GRAGR PG +K E+ + S P Sbjct: 370 GYVKEKSFNPGTGLELLKTVRISQAQAWQRCGRAGRDAPGKCYRTYSKASMEQFRSTSLP 429 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERL--SAQG 408 EIL+S+L+ +++LL G D + ++D PP + +A R L+ LGA++ L + G Sbjct: 430 EILRSNLTSTVLQLLALGI-DCSNFDFIDAPPPEGISSAHRALEQLGAIKPAPLVITTTG 488 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQ 467 + MA DPR A +L+SA + + A L +G++D + +Q Sbjct: 489 RWMAQFPLDPRYAKLLLSAPSFGCMEEMLSLVAALSSDNVFIGHTDKSELAALAHAKFQS 548 Query: 468 RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG 517 + L LNV + F + ++ R QLA G Sbjct: 549 KHGDHLTLLNVFSTFQKTEKPKIWCHDNFLNIRNLTYARNVRNQLAEISG 598 >UniRef50_UPI000050FFFD ATP-dependent helicase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FFFD Length = 1354 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 160/513 (31%), Positives = 263/513 (51%), Gaps = 38/513 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV+A E+ A+ V+++ TG+GK+T LP L G+NG I +PRR+AA Sbjct: 8 NLPVSAAKDEIAEAIRDNQVVIVAGETGSGKTTQLPKICLELGLGVNGLIGHTQPRRIAA 67 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA+R+A+ L E G T+GY++R V +TR++V+T+G+L + RD L ++I Sbjct: 68 RTVAERIADELGEDLGGTIGYQVRFTAQVADSTRVKVMTDGILLSELSRDKLLRDYEVII 127 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L +V G R +LK++I SAT+D +AP++ GR++ Sbjct: 128 IDEAHERSLNIDFLLGYLKEVM-GKRPELKVIITSATIDPQSFAAHFDDAPIIEVAGRTY 186 Query: 182 PVERRYLP-------------------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGV 222 PVE RY P + + + A E+ + G +L+FL G Sbjct: 187 PVEVRYRPLVDDDEDDDVDGPGESGSYETGPEEQTEGIIAAFDELSTEAPGDILVFLSGE 246 Query: 223 GEIQRVQEQLASRIG-----SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAET 277 EI+ E L + + S+ + PL+ LS +Q+K P ++VLATN+AET Sbjct: 247 REIRDTAEALEAHLRKRPRLSNWEVVPLFARLSAGEQQKVFK--PHSRPRLVLATNVAET 304 Query: 278 SLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA 337 SLT+ GI+ V+D R++R+ RT + RL +R+SQAS QR GR+GR GI + L + Sbjct: 305 SLTVPGIKYVIDVGTARISRYSNRTRVQRLPIERISQASANQRKGRSGRTSDGICIRLYS 364 Query: 338 KEQAERAAAQSEPEILQSDLSGLLMELL----QWGCSDPAQMSWLDQPPVVNLLAAKRLL 393 + + ++PEIL+++L+ +++++ + +L P + + +L Sbjct: 365 ETDFDSRPEFTDPEILRTNLASVILQMTDLGFAASDKEILDFPFLTPPEAKAVRDGRTML 424 Query: 394 QMLGALEGER-----LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPP 447 LGAL ++ ++ G++++ L DPRLA M+++ I A L + P Sbjct: 425 AELGALTSDKAGTITVTPTGRQLSLLPIDPRLARMVIAGAEAGCGGEVTIIVAALSIQDP 484 Query: 448 RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 R +++ A + L LN+ Sbjct: 485 RERPTEVRAAADEKHARFTHPGSDFLSYLNLWN 517 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 26/263 (9%) Query: 482 EADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQ 539 + ++ I L I R ++ YQ A G + L + ++++A L++ Sbjct: 652 DPHAAAIHRALLTGLLSMIGSRSERNKDYQGARGTRFAIFPGSGLFKKKPDFVMAAELVE 711 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQG-TLKAWRRLQIGQLTVKV 597 S AR + A ++ D +V+ LV + W G ++ + G V Sbjct: 712 TS-RLWARTVSA--IEPDWVVEAAGDLVTRQYSDPHWSKKAGGSMVYEKISLYGVTLVSD 768 Query: 598 QPLAKPSEDELHQAMLNGIRDKGLSVLNWTA-------------EAEQLRLRLLCAAKWL 644 + + + D +A + KGL +W EAE L R + Sbjct: 769 RRVGYGTFD--REAARDMFIRKGLIEGDWHERFGFLETNAAVIDEAEALASRTRNSRVLD 826 Query: 645 PEYDWPAVDDE---SLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDS 701 + DE + + + + + L L + + Sbjct: 827 QDDALFEFYDERIPATITSAADFRAWWKKQKRRDSHILDLS-TSILLSDDSEELTASVAD 885 Query: 702 ELPAHYTVPTGSRIAIRYHEDNP 724 + P + + GS +RY + Sbjct: 886 DFPMEWELVDGSTAKLRYSFEPG 908 >UniRef50_Q9H6R0 Putative ATP-dependent RNA helicase DHX33 n=37 Tax=Eumetazoa RepID=DHX33_HUMAN Length = 707 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 148/527 (28%), Positives = 248/527 (47%), Gaps = 17/527 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 SLP+ +LL L +L TG+GK+T +P L G I + +PRR+AA Sbjct: 73 SLPILQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAA 132 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+++ + G VGY +R + +T ++ +T+G+L R D L VI Sbjct: 133 ISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTGIKFLTDGMLLREAISDSLLRKYSCVI 192 Query: 122 LDEFHERSLQADLALALLLDVQQGLRD----DLKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ D+ ++ Q+ ++ LK+++MSAT+D D Q APV+ E Sbjct: 193 LDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNGAPVLYLE 252 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESG-SLLLFLPGVGEIQ---RVQEQLA 233 GR P++ Y P + A+ S +L+FL G EI+ + +A Sbjct: 253 GRQHPIQVFYTKQPQNDYLHAALVSVFQIHQEAPSSQDILVFLTGQEEIEAMSKTCRDIA 312 Query: 234 SRIGSD---VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + +L+ PLY +L Q + AP+G RKV+++TNIAETS+TI GI+ VVD Sbjct: 313 KHLPDGCPAMLVLPLYASLPYAQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDT 372 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 + +++P +GL L QRVS+ QR GRAGR + GI L +++ E+ + P Sbjct: 373 GMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGREDSGICYRLYTEDEFEKFDKMTVP 432 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER----LSA 406 EI + +L+ ++++LL + ++ +P ++ AA L +LGALE + L+ Sbjct: 433 EIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDHIQAAIAQLDLLGALEHKDDQLTLTP 492 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAW 465 G+KMAA +P+ A ++ + I ++L + + + Sbjct: 493 MGRKMAAFPLEPKFAKTILMSPKFHCTEEILTIVSLLSVDSVLHNPPSRREEVQGVRKKF 552 Query: 466 QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + LN+ + F + + R QL Sbjct: 553 ISSEGDHMTLLNIYRTFKNLGGNKDWCKENFVNSKNMTLVAEVRAQL 599 >UniRef50_B1VE65 Putative ATP-dependent helicase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VE65_CORU7 Length = 871 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 256/878 (29%), Positives = 388/878 (44%), Gaps = 97/878 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP--GINGKIILLEPRRL 59 LP +A LL+AL ++ AP G GK+T P L + ++I+ +PRR+ Sbjct: 7 PKLPFSAGRTSLLSALAEFGAAVVHAPPGTGKTTLAPQFLADADLVAPDQRVIVTQPRRV 66 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+ A RLAEL + G VGY +R + V TR+E+VT GVL R + RDP+L GVG Sbjct: 67 AARSAAARLAELRGTELGQEVGYTVRGDSRVSKQTRIEMVTPGVLLRRMLRDPDLPGVGA 126 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP-VVISEG 178 +++DE HER +++DL A+ +++ LRDDL +L MSAT+D R +L VV Sbjct: 127 IVVDEVHERHIESDLVFAIAAQLRE-LRDDLLILAMSATVDAQRFANLLGVPEAVVHVPA 185 Query: 179 RSFPVERRYLPLPAH-------------QRFDDAVAVATAEMLRQE-SGSLLLFLPGVGE 224 +P+E Y + +A L G +L F+P + Sbjct: 186 PIYPLEIHYAAAADSITHRRSDSRPGQPGSIEAFIAAGVRRALADTAEGDILAFVPTIRG 245 Query: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILP----APQGMRKVVLATNIAETSLT 280 + + +Q S + L+G LS Q + + P + R+V+ AT++AE+S+T Sbjct: 246 TELLAQQFDS---PGLAAFALHGQLSPKQQSEIVNPRGATSANPTRRVIFATDVAESSIT 302 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + G+R+VVD RV+R D G++ L+T+ +QAS QRAGRAGR PG LI+ ++ Sbjct: 303 VPGVRVVVDTCLSRVSRRDSSRGMSVLVTESAAQASCVQRAGRAGREGPGTVFRLISADE 362 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 R + P I SDL+G L+++ WG ++ D P N AA L+ LGAL+ Sbjct: 363 WARLPEFAAPAIQTSDLTGALLDVAAWGAPMGEGLALPDPLPQNNAAAAAATLRQLGALD 422 Query: 401 GE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG-NSDLGVAF 458 + ++ G+ + L DPR A + A A++ L+ + Sbjct: 423 ADGTITELGELLVTLPLDPRHARGGLLASRRVPVELVARVLQFLDVASSQRAPAGAIRDI 482 Query: 459 SRNQPAWQQRSQQLLKRLNVRGGE------ADSSLIAPLLAGAFADRIARRRGQDG-RYQ 511 S PA + +L++ L IA +A A D +ARR R Sbjct: 483 SPKDPAVR----RLVRLLQPHAPRELSDPLTGEDAIAYTIACARPDLLARRVEPGSERVL 538 Query: 512 LANGMGAMLDAN----DALSRHEWLIAPLLLQGS-----ASPDARILLALLVDIDELVQR 562 G GA++ + DA +W + + S IL + + +EL Sbjct: 539 TVGGTGAVIPKSMPGVDAPHNEQWFAVADIGRSESASARKSGTGSILRSAMPISEELALA 598 Query: 563 CPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLS 622 VQ+ T + + ++A R +G + + P AKPS E QA+ I Sbjct: 599 AAGGVQKERTASYSLEKKRVQARERTIVGAIELSSAP-AKPSAAEAEQAVSAAIAQASPE 657 Query: 623 ----VLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 +L ++ A +L R+ A L A L LL + + Sbjct: 658 QLEEMLQLSSNARELVKRMQYLHDAAVAGFERASGYPDLRAGLPAELLSFIA--ADIAAG 715 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHE----------------- 721 + D+ LRGL+ W +D P +P+G + Y E Sbjct: 716 RRPDVASLLRGLIPWDQP--IDELAPESLELPSGRTRRLTYPEVLIGSSAAGAVSDAASV 773 Query: 722 ----------------------DNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQ 759 P LA ++Q+ FG +P IA RV LLSPAQ Sbjct: 774 APGDVVPGSSGEGQAAPAAEPHAEPVVLATKLQDAFGLTESPRIAGRRV--QFHLLSPAQ 831 Query: 760 RPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 RP+ +T DL FW G Y+ V+K+M+GRYPKH WP DPA Sbjct: 832 RPVAVTDDLGSFWAGPYQGVRKDMRGRYPKHAWPQDPA 869 >UniRef50_A2DQS5 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2DQS5_TRIVA Length = 785 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 156/522 (29%), Positives = 255/522 (48%), Gaps = 13/522 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 SLPV LL AL +++ TG+GKST +P LL N ++ +PRR+AA Sbjct: 149 SLPVFKYKKTLLDALVSNHVLVVVGDTGSGKSTQIPQYLL-ERSPNESVVCTQPRRVAAM 207 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+AE + + G VGY +R + T++ +T+G L R DP LS V++ Sbjct: 208 SVAARVAEERHVELGFEVGYAVRFDDKTSEFTKIRYMTDGTLLREFLVDPLLSKYTTVMI 267 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERS+ D+ L+LL D+ Q +R + +L++ SATLD + + P++ GR F Sbjct: 268 DEAHERSISTDILLSLLKDLMQ-VRPEFRLVVASATLDAASMSDFYDKCPILTVPGRRFT 326 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLR---QESGSLLLFLPGVGEIQR----VQEQLASR 235 V+ Y P A+ ++ +L+FL G EI R + E ++S+ Sbjct: 327 VDINYTNTPVVDYEIAAIDTVVKIHTSTEIEQPCDILVFLTGQDEIDRSVAKINELISSK 386 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + +++ PLY AL Q PAP+G RKV+ +TNIAETSLTI+ ++ V+DC + Sbjct: 387 VINNIEALPLYSALPSERQSLIFKPAPRGTRKVIFSTNIAETSLTIDTVKYVIDCGLVKE 446 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ-SEPEILQ 354 +D + G + L +S++S QRAGRAGR GI L + E Q ++PEI + Sbjct: 447 MSYDSKNGCSSLDRVPISKSSADQRAGRAGRTSHGICYRLYTESSFEFEHEQMTKPEIKR 506 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 D + L+ L+ G +D +++D P N+++A L L AL+ + L+ G++M+ Sbjct: 507 CDFAPTLLLLISMGITDIVNFNFVDSPATNNIISAYEQLGALQALDNDGNLTELGEQMSQ 566 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILE--EPPRMGNSDLGVAFSRNQPAWQQRSQQ 471 L P A ++ + + + I ++LE P + + + + Sbjct: 567 LPVSPMCARAILKSFELGCSESVITICSVLESGSPLFYFSQNESKDAIAHIKQFYDEEGD 626 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 + LNV D+ G ++ + QL+ Sbjct: 627 HIMCLNVYNQWVDAEYSQQWCIGNKVQHRTLLNAKNIKNQLS 668 >UniRef50_Q3SHC5 ATP-dependent helicase HrpA n=3 Tax=Betaproteobacteria RepID=Q3SHC5_THIDA Length = 1275 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 169/504 (33%), Positives = 260/504 (51%), Gaps = 27/504 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLA 60 LPVAA ++L AL+ ++L TG+GK+T +P L GK I +PRR+A Sbjct: 23 PDLPVAARRDDILAALERHRVLILCGETGSGKTTQIPKMCLEAGIPPGKLIGCTQPRRIA 82 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+A+ L + G VGY++R + V P+T ++V+T+G+L Q DP LS + Sbjct: 83 ARSVAARIAQELGSELGGLVGYKVRFSDKVRPDTAIKVMTDGILLAESQGDPLLSRYDTI 142 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HERSL D L L + R DL++L+ SAT+D +R + +APV+ GR Sbjct: 143 ILDEAHERSLNIDFLLGYLKTLLDK-RADLRVLVTSATIDAERFSKHFDDAPVIEVSGRL 201 Query: 181 FPVERRYLPLPAHQ----------------------RFDDAVAVATAEMLRQESGSLLLF 218 +PVE R+ P+ A+ AT E+ R G +L+F Sbjct: 202 YPVEIRWRPIARDDEAGAPGNKREAEKPGRTYKDGPDQIAAILDATDELARLGPGDILVF 261 Query: 219 LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 LPG EI+ E L + PL+ LS+ +Q P +R++VLATN+AETS Sbjct: 262 LPGEREIRDTAEALRKHHPPGTEILPLFSRLSVAEQDAIFKPTSA-LRRIVLATNVAETS 320 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ GIR V+D RV R+ R + +L+ ++VSQAS QRAGR GR+ G+ + L + Sbjct: 321 LTVPGIRYVIDPGTARVKRYSARNKVEQLLIEKVSQASANQRAGRCGRVADGVCIRLYDE 380 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 ++PE+L+S L+G+++ + G D ++D P + +LL L A Sbjct: 381 ADFSNRPRFTDPELLRSSLAGVILRMKSLGLGDVVGFPFIDPPSSRLVTDGYQLLGELHA 440 Query: 399 LEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGV 456 L+ + +L+ G+++A L DPR+A ML++A+ IA+ L + PR + Sbjct: 441 LDEQGQLTKIGRQLAKLPLDPRIARMLLAAEQQRCVREILIIASALSVQDPRDRPMERAQ 500 Query: 457 AFSRNQPAWQQRSQQLLKRLNVRG 480 A +Q + L + Sbjct: 501 AADEKHKLFQDERSDFMGWLRLWR 524 Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 12/160 (7%) Query: 501 ARRRGQDGRYQLANGMGAMLDANDALS--RHEWLIAPLLLQGSASPDARILLALLVDIDE 558 R + +G Y A G+ + AL+ +W++A L + V + Sbjct: 610 GRPKPGEGNYLGARGIKLSIHPGSALAKKGPKWIMAAELTDTGRLLARTV---AEVRPEW 666 Query: 559 LVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV--KVQPLAKP-SEDELHQAMLN 614 + L+ + W+ + AW R+ + +T+ + + P + + + Sbjct: 667 IEGAGRHLLTRMYIEPHWEKDGARVVAWERVSLYGITLVPRRKIHYGPIDPELARELFIR 726 Query: 615 GIRDKG--LSVLNWTAEAEQLRLRLLCA-AKWLPEYDWPA 651 G G + W A L + K W Sbjct: 727 GALVAGDYDTRAPWFAHNRALIQEIEDLEHKARKSGVWLD 766 >UniRef50_D0A429 Pre-mRNA splicing factor ATP-dependent RNA helicase, putative n=2 Tax=Trypanosoma brucei RepID=D0A429_TRYBG Length = 754 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 147/494 (29%), Positives = 246/494 (49%), Gaps = 11/494 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH---PGINGKIILLEPRRLA 60 LPV ++ + V++ TG+GK+T +P + G G + +PRR+A Sbjct: 76 LPVTEARAAIVRMIRRHNAVVIVGETGSGKTTQIPQYVWDDIVSKGDGGIVGCTQPRRVA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A ++A+ +A+ K G V Y +R + NT+++ +T+G+L R IQ DP+L+ + Sbjct: 136 AVSIARHVAQQRGGKVGGEVAYAVRFDDTCTKNTKIKFMTDGILLREIQTDPDLTHYRCL 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HER+L D+ LL D+ + ++ L ++IMSATL+ + + +APV + GR+ Sbjct: 196 ILDEAHERTLHGDVLFGLLKDIARRRKNTLSIVIMSATLNEEHFSKFWWDAPVGVIHGRT 255 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--- 237 FPV + P + AV+ R+E G +L FL G EI+ + L R+ Sbjct: 256 FPVTIYHTVEPQADYVEAAVSALLQIHQREEPGDVLCFLTGREEIEDAKRMLEQRMKLLP 315 Query: 238 ---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 D ++ PLY A+ Q PAP G RK+++ATNIAETS+T+EGI+ VVD + Sbjct: 316 NDIGDFVVLPLYSAMPYEQQLVVFDPAPPGKRKIIIATNIAETSITVEGIKYVVDSGVVK 375 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++ +TG+ L VS+A TQRAGRAGR+ G L + E + PEI + Sbjct: 376 AKHYNSKTGMEVLAEVDVSRAQATQRAGRAGRVAAGKCFRLYTAQAFESLHENTVPEIQR 435 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAA 413 L +++++ A ++D P L A+ L +L AL+ E ++ G+++ Sbjct: 436 CSLISVVLQMKSLNIDRIADFEFMDAPNPHALTKAEETLMLLNALDSEGCVTPLGKRLTD 495 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQL 472 +P A +L++ K A A+ E + + D+ R + A+ + + Sbjct: 496 FPIEPAAAMVLLAGKALGVEREAVIAIAMTSTENLFVTSRDIKERADRCKGAFAKSAGDH 555 Query: 473 LKRLNVRGGEADSS 486 +++ S Sbjct: 556 ATLVSIYQAFKHSP 569 >UniRef50_A5EVC9 ATP-dependent helicase HrpA n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVC9_DICNV Length = 1302 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 162/484 (33%), Positives = 258/484 (53%), Gaps = 10/484 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV A + + V++S TG+GK+T LP L G G+I +PRR+A Sbjct: 69 NDLPVLAQKERIKELIAQHQVVIISGETGSGKTTQLPQICLELGLGAGGQIAHTQPRRIA 128 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE L+ G VGY++R P+T ++++T+G+L DP L ++ Sbjct: 129 ARSVAARIAEELSVPLGAAVGYQVRFDEQCSPDTVIKLMTDGLLLAETLTDPYLYQYEVI 188 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + + R DLKL+I SAT+D ++ + +AP + GR+ Sbjct: 189 IIDEAHERSLNIDFLLGYLHRLLEKRR-DLKLIITSATIDAEKFARHFHQAPQINVSGRT 247 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE RY PA + + A E+ ++ G +L+FLP +I+ L+ Sbjct: 248 YPVEIRYREPPADSDLSEEILAAIDELDCEQRGDILVFLPTERDIRETATFLSRAQLPAT 307 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LSL DQ+ P+ R++VLATN+AETSLT+ I+ V+D R++R+ Sbjct: 308 DILPLFGRLSLADQQAVFR--PKNQRRIVLATNVAETSLTVPRIKYVIDTGTARMSRYSL 365 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RT RL + +SQAS QRAGR GRL G+ + L ++E + +EPEIL+++L+ + Sbjct: 366 RTKTQRLPIEAISQASANQRAGRCGRLSAGVCIRLYSEEDFQNRPEFTEPEILRTNLAAV 425 Query: 361 LMELLQWGC----SDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALG 415 ++++L D A+ ++D P + + RLL L A++ RL+ G+K+A L Sbjct: 426 ILQMLLLNLAQNGDDIARFPFVDPPEMRQINDGYRLLFELKAVDNHNRLTDLGRKIARLP 485 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLK 474 DPR A ++ +A+ + A L + PR D + ++ Sbjct: 486 IDPRFARIVFAAEEHACLHETLIVLAALSIQDPRERPFDKEQHADMRHREFADKTSDFQT 545 Query: 475 RLNV 478 LN+ Sbjct: 546 LLNL 549 >UniRef50_C0VVM1 HrpA family ATP-dependent helicase n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VVM1_9CORY Length = 1344 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 162/500 (32%), Positives = 269/500 (53%), Gaps = 24/500 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 LPV+ + ++ A+ V+++ TG+GK+T +P L G G I +PRRLA Sbjct: 71 PELPVSRRVDDIAAAIRDNQVVIIAGETGSGKTTQIPKICLEIGRGRRGMIGHTQPRRLA 130 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA+R+AE + + G++VGY +R + VGP+T ++++T+G+L +QRD L+ + Sbjct: 131 ARTVAERIAEEVGQNIGESVGYAIRFDDKVGPHTAVKIMTDGILLAEMQRDRFLNAYDTI 190 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVI 175 I+DE HERSL D L L + R DLK++I SAT+D +R + + AP++ Sbjct: 191 IIDEAHERSLNIDFILGYLKRLLPK-RPDLKVIITSATIDPERFARHFADRSGRPAPIIE 249 Query: 176 SEGRSFPVERRYLPLPAHQ-------RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 GR++PVE RY PL D + A E++++ G +L F G +I+ Sbjct: 250 VSGRTYPVEIRYRPLVEIHGDKEVAIDELDGLLAALEELMQEGPGDILCFFAGERDIRDA 309 Query: 229 QEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 + +++R +V + PL+G LS +Q + +P R++VLATNIAETSLT+ GI VV Sbjct: 310 LDAISARKFKNVEVTPLFGRLSNAEQHRVF--SPHRGRRIVLATNIAETSLTVPGIHYVV 367 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D R++R+ RT + RL + +SQAS QR+GR GR+ GI++ L ++E + Sbjct: 368 DTGLARISRYSNRTKVQRLPIEPISQASANQRSGRCGRVANGIAIRLYSEEDFASRPEFT 427 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE------ 402 +PEI +++L+ +++++ D ++ P ++ +LL LGA+ + Sbjct: 428 DPEIHRTNLASVILQMALLRLGDIRNFPFVQAPDEKSIRNGIQLLLELGAINEQKPGDES 487 Query: 403 -RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSR 460 RL+A G+++A + DPRLA ML+ A+ A I A L + R D + Sbjct: 488 PRLTAVGRQIARIPVDPRLARMLIEAEKMHVLAPVTIIVAALTLQDVRERPLDKQQQADQ 547 Query: 461 NQPAWQQRSQQLLKRLNVRG 480 ++ + L+ L + Sbjct: 548 MHSRFKDKGSDLMGYLALWA 567 >UniRef50_B9H2M0 Predicted protein n=9 Tax=Embryophyta RepID=B9H2M0_POPTR Length = 702 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 160/580 (27%), Positives = 265/580 (45%), Gaps = 36/580 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLAA 61 LPV +L ++ ++ TG+GK+T +P L +G I +PRRLA Sbjct: 52 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 111 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGLV 120 + VA R+AE ++ K G+ VGY +R ++ P T ++ +T+GVL R I DP L+ ++ Sbjct: 112 QTVASRVAEEMDVKLGEEVGYTIRFEDVTNPAATMIKFLTDGVLLREIMNDPLLTKYSVI 171 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP-------- 172 ++DE HERS+ D+ L LL +Q+ R +L+L+I SAT++ + + Sbjct: 172 MVDEAHERSISTDILLGLLKKIQR-RRPELRLIISSATIEAKSMSDFFQTSKKHRGPEDH 230 Query: 173 ---------VVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVG 223 ++ EGR F V Y+ P V+ + ++ +G +L+FL G Sbjct: 231 EFVPRKVPAILSVEGRGFNVHIHYVVEPVSDYVQATVSTVLSIHEQEPAGDILVFLTGQD 290 Query: 224 EIQRVQEQLAS------RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAET 277 +I L +I S +++ PLY +L DQ P P+G RKVV++TNIAET Sbjct: 291 DIDTAIRLLTEEAHASRKISSGLIVLPLYSSLPRADQDLVFSPTPRGKRKVVISTNIAET 350 Query: 278 SLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA 337 SLT+EG+ VVD + ++P + + L+ +S+AS QRAGRAGR+ PG L Sbjct: 351 SLTLEGVVYVVDSGFSKQQFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT 410 Query: 338 KEQA-ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQML 396 +E ++ PE+ +S L +++L G + W PP ++ A +L L Sbjct: 411 EEYFVNEMSSVGIPEMQRSKLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSL 470 Query: 397 GALEGE--RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSD 453 G L+ + S G + A + DP ++ M++S+ + IAAIL + + Sbjct: 471 GVLDDDAKLTSPVGFQAAEIPLDPMISKMILSSNQLGCSDEIITIAAILSIQSIWVSGRG 530 Query: 454 LGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 + + + + LNV G S + + + A ++ + R QL Sbjct: 531 VQKELDEAKLRFAAAEGDHVTFLNVYKGFLQSGKSSQWCHKNYMNYQAMKKVIEIREQL- 589 Query: 514 NGMGAMLDANDALSR--HEWLIAPLLLQGSASPDARILLA 551 L L + L + +A L A Sbjct: 590 --RRTALRLGIVLKSCEGDMLAVRKAVTAGFFANASRLEA 627 >UniRef50_A2D7A5 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2D7A5_TRIVA Length = 660 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 247/481 (51%), Gaps = 5/481 (1%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAA 61 SLP+ +++ + P +L TG GKST +P L+ + G ++ + +PRR++A Sbjct: 44 SLPIWKSKKQIIELIANNPTTILVGETGCGKSTQVPQFLVDSFELKGCRVAVTQPRRVSA 103 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+A N + G VGY +R N P + ++ VT+G+L R I D +LS +VI Sbjct: 104 TSLAARVAAERNCEVGSYVGYSVRFDNKSSPKSYIKYVTDGMLLREILVDNDLSAYNVVI 163 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++Q DL + LL D+Q R DLKL++MSATL+ P++ EGR+F Sbjct: 164 LDEIHERTVQTDLLIGLLRDLQ-ARRSDLKLILMSATLNCKLFVDFFNGPPIIHVEGRTF 222 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-SRIGSDV 240 V +Y P + + G L+FL G EI+ V E L + Sbjct: 223 KVAIKYTDEPQTDYIEATTTAVLQLNEECDKGDFLVFLTGQEEIEEVMETLKTEETYPPL 282 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PLY AL + Q++ P +G RKV+L+TNIAETS+TI GI+ V+D +V ++P Sbjct: 283 KVLPLYAALPMYQQQEVFNPVDEGTRKVILSTNIAETSVTIPGIKYVIDSGLVKVKTYNP 342 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 +G+ L ++A + QRAGRAGR GI+ L ++ Q EI ++DLS + Sbjct: 343 VSGIEILGVTPCAKAQVVQRAGRAGRESEGIAFRLFTEDSFFDLKDQPVAEIRRADLSSV 402 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 +++L G +P +L++PP + A+ + L LGAL + LS G+ MA +P+ Sbjct: 403 VLQLFALGVKNPMTFGFLERPPTEMIQASIQQLWSLGALTPQGELSDDGKVMANFPMNPK 462 Query: 420 LAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 + +L+ A +A + A++ E + ++ + + + + + Sbjct: 463 MTKILLLACQSGCGGSALTLLAMMSCENLYVQPANKRKEARNAHSIFIHETGDHVTLIRL 522 Query: 479 R 479 Sbjct: 523 Y 523 >UniRef50_C8N990 ATP-dependent helicase HrpA n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N990_9GAMM Length = 1310 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 170/480 (35%), Positives = 259/480 (53%), Gaps = 6/480 (1%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV A ++L + V++S TG+GK+T LP LA G G I +PRR+A Sbjct: 76 ADLPVLAAKNDILRLIREHQVVIISGETGSGKTTQLPQLCLALGLGARGTIAHTQPRRIA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE L+ GD VGY++R T ++++T+G+L DP L+ ++ Sbjct: 136 ARSVAARIAEELDTPLGDAVGYQVRFDEKTSDATVIKLMTDGMLLAETLSDPYLAQYEVI 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D ++ APV+ GR+ Sbjct: 196 IVDEAHERSLNIDFLLGYLHRLA-ARRPDLKIIITSATIDAEKFAAHFGGAPVLNVSGRT 254 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE RY P + DA+ A AE+ + +L+FLP +I+ ++L D Sbjct: 255 YPVEIRYRPPGEDEDTADAILRAVAELDQHGRNDILVFLPSERDIREAADRLRREQLRDT 314 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LSL DQ+ P R++VLATN+AETSLT+ I+ V+D R++R+ Sbjct: 315 DVLPLFGRLSLADQQAVFRPQAP--RRIVLATNVAETSLTVPRIKAVIDTGTARISRYSL 372 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RT RL + +SQA+ QRAGR GR+ GI + L ++E + A +EPEIL+++L+ + Sbjct: 373 RTKTQRLPIEPISQAAANQRAGRCGRVSSGICIRLYSEEDYAQRPAYTEPEILRTNLAAI 432 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 ++++L D A ++D P + RLL L A + RL+ G+ MA L DPR Sbjct: 433 ILQMLVLKLGDIAAFPFVDAPDERQINDGYRLLYELQATDEARRLTPLGRHMARLPVDPR 492 Query: 420 LAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 A +LV+A+ A + A L + PR + Q + +S LN+ Sbjct: 493 FARILVAAEKSGCLQDALILVAALSIQDPRERPFGQEARADQKQGEFADKSSDYQTLLNL 552 >UniRef50_C5BR02 ATP-dependent helicase HrpA n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR02_TERTT Length = 1353 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 153/490 (31%), Positives = 259/490 (52%), Gaps = 15/490 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LP++A E+ + ++ V+L+ TG+GK+T LP L G+ G I +PRR+AA Sbjct: 82 ALPISAKRDEIKSLIEANQVVILAGETGSGKTTQLPKICLELGRGLRGMIGHTQPRRIAA 141 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ L + G VGY++R + T ++++T+G+L IQ+DP L +I Sbjct: 142 RTVASRIADELQVQLGSEVGYQVRFTDHSNSATHIKLMTDGILLAEIQQDPLLYKYDTLI 201 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVIS 176 +DE HERSL D L L V + R DLKL++ SAT+D + + APV+ Sbjct: 202 IDEAHERSLNIDFLLGYLKGVLKQ-RPDLKLIVTSATIDLQKFAAHFSDQDGKPAPVIEV 260 Query: 177 EGRSFPVERRYLPLPAH-QRFDDAVAVATAE---MLRQESGSLLLFLPGVGEIQRVQEQL 232 GR++PVE Y P Q ++A+ A E M + G +L+FL G EI+ + Sbjct: 261 SGRTYPVETLYRPWDDDYQDINEAIVGAIEEILTMPHKSDGDILVFLSGEREIREASHAI 320 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + + PLY LSL +Q + R+VVLATN+AETSLT+ GI V+D + Sbjct: 321 KKADFRHLEILPLYARLSLAEQNRVFQA--HRGRRVVLATNVAETSLTVPGIGYVIDPGR 378 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R++R+ RT + RL + +SQAS QR GR GR+ G+ + L + ++PEI Sbjct: 379 ARISRYSVRTKVQRLPIEAISQASANQRKGRCGRVSNGVCIRLYDEADFLGRPEFTDPEI 438 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKM 411 +++L+ +++++LQ D + ++D+P + +LL+ + A++ + +++A G+++ Sbjct: 439 QRTNLAAVVLQMLQLRIGDVRKFDFVDRPENRLINDGFKLLEEIQAVDRKGKITALGRQL 498 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQ 470 +L DPR A ++++ + I + L + PR ++ A + + Sbjct: 499 YSLPLDPRFARIILAGAEHNCLREILIIVSGLSIQDPRDRPAEKRQAADEKHRRFWDENS 558 Query: 471 QLLKRLNVRG 480 L N+ Sbjct: 559 DFLGFYNLWN 568 >UniRef50_Q38AN5 Pre-mRNA splicing factor ATP-dependent RNA helicase, putative n=7 Tax=Trypanosomatidae RepID=Q38AN5_9TRYP Length = 1062 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 160/527 (30%), Positives = 252/527 (47%), Gaps = 17/527 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 SLP+ A L +D +L TG+GK+T +P L+ H G NG + +PRR+AA Sbjct: 399 SLPIYAFRDRFLQHVDAHAVTVLVGETGSGKTTQIPQYLVEHGYGKNGVVCCTQPRRVAA 458 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +A R+AE + G+ VGY +R ++ T ++ +T+G+L R D ++I Sbjct: 459 ETLAIRVAEEYGCRLGEEVGYTVRFRDVTSSLTCIKYMTDGMLLREALLDDSFQRYSVII 518 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HERS+ DL A++ + R LK+++ SATL+ ++ V EGR+F Sbjct: 519 LDEAHERSVNTDLLFAIVRNATHK-RPTLKVIVTSATLEREKFCSYFNVHDVFFIEGRTF 577 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PV+ +L P D A+ L + G +L+FL G EI+ ++L + Sbjct: 578 PVDTYFLAEPTEDYLDCALKTVMKLHLEEPPGDVLVFLTGQEEIEFGGDRLFRWMERLRG 637 Query: 239 -------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 D+L+ PL L + Q + P P RKVVLATN+AETS+TI + VVD Sbjct: 638 LSDLPVPDMLILPLTATLPQDVQSRVFEPTPPHCRKVVLATNVAETSITISNLSYVVDSG 697 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEP 350 + FDP+TG+ +L +SQA QRAGRAGR+ PG + + Q + + P Sbjct: 698 YSKQNVFDPKTGMEQLKIMPISQAQARQRAGRAGRIGPGKCFRMYTEIQFRQDMDPATVP 757 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQ 409 +I +S+L ++++L G +D + +D PP L+ A + L+ L AL+ + L+ G Sbjct: 758 DIQRSNLFHVVLQLKAMGINDLFALDLMDPPPQETLVTALQKLRYLEALDEDGLLTPLGG 817 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR---MGNSDLGVAFSRNQPAWQ 466 +MA L DP + L++A + + I ++L R D A + + Sbjct: 818 RMAHLPIDPSHSKTLLTAVDLGCSEPVLTIVSMLAAQKRGVFYRPRDQHEAADAAKRQFH 877 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 Q + L V + L F +D R QL+ Sbjct: 878 QPEGDHITLLAVYDAWVANGLSENWCKRNFLKHRMLMEARDTRDQLS 924 >UniRef50_Q9VL25 CG4901 n=10 Tax=Drosophila RepID=Q9VL25_DROME Length = 694 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 159/526 (30%), Positives = 257/526 (48%), Gaps = 18/526 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAA 61 SLPV +L L+ VL+ + TG+GK+T +P LL A NG I + +PRR+AA Sbjct: 67 SLPVFNCRHRILKELEANDTVLIMSETGSGKTTQIPQFLLLAGYAKNGMIGITQPRRVAA 126 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 VA+R+A+ LN GDTVGY +R ++ T++ +T+GVL R +D L ++I Sbjct: 127 ITVARRVAQELNGTIGDTVGYTVRFEDVTSRATKIRFLTDGVLLRESIKDRLLLKYSVII 186 Query: 122 LDEFHERSLQADLALALLLDVQQGLRD----DLKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ ADL ++ D Q+ R +LK+++ SAT+D D + E Sbjct: 187 LDEAHERTVNADLLFGIVKDAQKERRKQKLANLKVVVTSATMDIDHFGNYF-NCKGMYLE 245 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQLASRI 236 GR++PV + + +L+FL G EI+ + +Q+ Sbjct: 246 GRTYPVRVMHTKEEHEDYIHTVLVTLFHIHRTTPKNHDVLIFLTGQEEIESLAQQIRQLA 305 Query: 237 G------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 +D+ + LY LS Q + +P P +RKV+LATNIAETS+TI GIR V+DC Sbjct: 306 KIDTTGTTDLRVFTLYAQLSQGKQLECFVPTPANVRKVILATNIAETSITIPGIRCVIDC 365 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 + F+ GL L + R+S+A QRAGRAGR G K + + A ++P Sbjct: 366 GFVKEKSFNTVDGLDVLKSVRISKAQAWQRAGRAGRDADGTCYRAYTKAEMDSFADATQP 425 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL---EGERLSAQ 407 EIL+++ + ++++LL D +LD P L +A + L LGA+ + ++ Sbjct: 426 EILRTNPTSMVLQLLALDI-DCNNFDFLDPPLEDGLRSAYKSLDALGAIKTGDDSYITPL 484 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP-PRMGNSDLGVAFSRNQPAWQ 466 G++M DP+ + +L++A + + ++L + NS+ + +Q Sbjct: 485 GRQMVQYPLDPKYSKLLLTASSFGCMEEILSLVSVLSSDHVFVSNSEKNEMAALAHAKFQ 544 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + L LNV G S + + + ++ R QL Sbjct: 545 SKHGDHLTLLNVFNGFLKSEKPKMWCHDNYLNLRSLTYARNVRRQL 590 >UniRef50_D0LBQ9 ATP-dependent helicase HrpA n=2 Tax=Corynebacterineae RepID=D0LBQ9_GORB4 Length = 1324 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 195/733 (26%), Positives = 316/733 (43%), Gaps = 97/733 (13%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 LPV+A E+ A+ V+++ TG+GK+T LP L G+ G I +PRR+A Sbjct: 86 PELPVSAARTEIAEAIRDHQVVVIAGETGSGKTTQLPKICLGLGRGVRGMIGHTQPRRIA 145 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A+ GD VGY +R + ++ + V+T+G+L R I DP L + Sbjct: 146 ASSVARRIADETETTLGDVVGYSVRFTDRSSADSLIRVMTDGILLREIGTDPLLRRYDTL 205 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVIS 176 I+DE HERSL D L L + R DLK++I SAT++ +R + E P++ Sbjct: 206 IIDEAHERSLNIDFILGYLRRLLP-RRPDLKVIITSATIEPERFARHFSTPAGEVPILEV 264 Query: 177 EGRSFPVERRYLPLPAHQ----------------RFDDAVAVATAEMLRQESGSLLLFLP 220 GR++PV+ RY L + + A E+ G +L+FLP Sbjct: 265 SGRTYPVDVRYRALTLRESPDHGDDLGGGEHADLDLFQGIDAAIDELWSTGRGDVLVFLP 324 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 +I+ + L R + + PLY LS+ DQ++ AP R++VLATN+AETS+T Sbjct: 325 TERDIRDAADTLRRRASAGAEIVPLYARLSVADQQRVF--APSDGRRIVLATNVAETSVT 382 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + GIR VVD R++R+ RT + RL + +SQAS QRAGR GR+ PGI + L ++E Sbjct: 383 VPGIRYVVDSGTARISRYSTRTKVNRLPIEPISQASARQRAGRCGRVAPGICIRLYSEED 442 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + A ++PEIL+++L+ +++++ D A ++ P + +L LGA+E Sbjct: 443 FDARPAFTDPEILRTNLAAVILQMTSLRLGDIADFPFVAPPDPRAIRDGIAVLTELGAIE 502 Query: 401 G-------ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNS 452 RL+A G+ MA L DPR+A ML++ +AA L P R S Sbjct: 503 MPDGQSGLPRLTAVGRSMARLPVDPRIARMLIAGHELGCLDHLVVLAAALSLPDVRERPS 562 Query: 453 DLGVAFSRNQPAWQQRSQQLLKRLNVRG-------------------------------- 480 D A + + L L + Sbjct: 563 DHREAADAAHRRFAVPNSDFLSYLELWSYLEEKRTELSGNQFRRMCEREYLHYLRIREWR 622 Query: 481 -------------------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD 521 E D+ I + IA R + + A M+ Sbjct: 623 DLTRQLREIVGNLDWSTARTERDADAIHRAVLSGLLSNIAARNAEGREFTGARNTTLMIF 682 Query: 522 ANDALSRHE--WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDA 578 L++ +L+A +L+ S + +D + L +++ W Sbjct: 683 PGSGLAKKPPSFLMAAEILETSRLFAHTV---AGIDPLWAEKLAGPLAKRTYSEPHWSAR 739 Query: 579 QGTLKAWRRLQIGQLTVKVQPL---AKPSEDELHQAMLNGIRDKGLSVLNW-TAEAEQLR 634 +G A+ R+ + + + + + + + L +G +W T A R Sbjct: 740 RGAAMAYERVTLYGVPLVARRRVDYGRIDPETSRELFLRHALVEG----DWHTQHAFFAR 795 Query: 635 LRLLCAAKWLPEY 647 R L A E+ Sbjct: 796 NRALLEAAADVEH 808 >UniRef50_A0Z814 Helicase, ATP-dependent n=3 Tax=unclassified Gammaproteobacteria RepID=A0Z814_9GAMM Length = 1246 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 191/660 (28%), Positives = 307/660 (46%), Gaps = 73/660 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LPV E+ A+ V+++ TG+GK+T +P L G +I +PRRLAA Sbjct: 22 ELPVCERREEIREAISQHQVVIIAGETGSGKTTQIPKICLELGRGQEARIGHTQPRRLAA 81 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA+R+A+ L + G VGY++R + V P+T ++++T+G+L +QRD EL +I Sbjct: 82 RRVAERIADELESELGGLVGYKVRFNDSVAPSTAIKLMTDGILLAELQRDRELRDYDTLI 141 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D DR Q APV+ GR F Sbjct: 142 IDEAHERSLNIDFILGYLRALLPK-RPDLKVIITSATIDVDRFSQHFDNAPVIEVSGRLF 200 Query: 182 PVERRYLPLP--AHQRFDDAVAVATAEMLRQ---ESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE YL A +D + A ++ + G +L+FLPG EI+ + +L Sbjct: 201 PVEVLYLGDSDGAEDGVEDQIVRAVDGIVAEDFGPRGDVLIFLPGEREIRDLSRRLKG-- 258 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS +Q + P GMR VVLATN+AETSLT+ GIR V+D RV+ Sbjct: 259 DERRQILPLYARLSAAEQNRVFKPTGSGMR-VVLATNVAETSLTVPGIRYVIDPGTARVS 317 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ RT L RL +R+SQ+S QR GR GR+ G+ L L +++ ++PEIL+++ Sbjct: 318 RYSHRTRLQRLPVERISQSSADQRKGRCGRVAAGVCLRLYSEQDFLARPQFTDPEILRTN 377 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALG 415 L+ +++++L+ G D + ++D P + +RLL+ LGA+ +L++ G+KMA L Sbjct: 378 LAAVVLKMLELGLGDVQKFPFVDPPEGKMVRDGQRLLEELGAISARGKLTSLGRKMARLP 437 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL- 473 DP+LA M+ +A + + L + PR ++ + + L Sbjct: 438 VDPKLARMVHAAGELKCLEEVLVVVSALAVQDPRDRPAEKRAQADQAHARFNHPRSDFLS 497 Query: 474 --------------------KRLNVR---------------------------------G 480 ++L R Sbjct: 498 WLNLWNYYEEQRQSLSQNQFRKLCQREFLSFMRLREWREVHSQLVIACRQVQLRPGAALN 557 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE--WLIAPLLL 538 E D + L ++A+ + +Y + L + WL+A ++ Sbjct: 558 DETDFEGVHKALLSGLLGQVAQ-LDEGRKYNATRNRSVQIFPGSVLHKKPPKWLVAAEVV 616 Query: 539 QGSASPDARILLALLVDIDELVQRCPQLVQQSD-TVEWDDAQGTLKAWRRLQIGQLTVKV 597 + S +D L++ PQ++++ W G + A R+ + LT+ Sbjct: 617 ETS---QVYARQCAAIDPKWLLRINPQILKRHHYEPAWQMRSGRVMAIERVTLYGLTISD 673 >UniRef50_B6H7B9 Pc16g02360 protein n=34 Tax=Leotiomyceta RepID=B6H7B9_PENCW Length = 672 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 169/549 (30%), Positives = 272/549 (49%), Gaps = 35/549 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKII-LLEPRRLAA 61 LP+A LL ++ P ++ TG+GK+T LP L +GKII + +PRR+AA Sbjct: 22 LPIARHKKNLLYLVEKYPVTIVVGQTGSGKTTQLPQYLDQAGWCEDGKIIAVTQPRRVAA 81 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 VA R+AE + K G+ VGY +R ++ P TR++ +T+G+L R DP LS +++ Sbjct: 82 TTVATRVAEEMRCKVGEEVGYSIRFEDLTSPATRIKFLTDGMLLREALVDPLLSRYSVIM 141 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----------- 170 +DE HERSL D+ L L +++ R +L++++ SATL + + Sbjct: 142 VDEAHERSLGTDVLLGTLKKIRKK-RPELRIIVSSATLQAEDFLRFFAGEEYQPEAEPED 200 Query: 171 -----APVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI 225 ++ EGR +PV+ +L PA + AV ++ G +LLFL G EI Sbjct: 201 LGGSVGRIISLEGRMYPVDILFLDSPAEDYIERAVKTVFDIHTQEPEGDVLLFLTGREEI 260 Query: 226 QRVQEQLASRIG------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSL 279 + ++ R +L PLY L+ Q P P+ RKV+++TNIAE S+ Sbjct: 261 DTAIQLISERAATLHPKAPSLLPLPLYAGLTTEQQMYVFEPTPENTRKVIVSTNIAEASV 320 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 TI+GI V+D ++ ++P TG+ L +S+AS TQRAGRAGR +PG L ++ Sbjct: 321 TIDGIVYVIDSGFAKLRAYNPNTGIDTLTAVPISKASATQRAGRAGRTKPGKCFRLYTQQ 380 Query: 340 QAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL 399 E+ PEI +S+L+ ++M+L G + + +L PP ++ A LL LGA+ Sbjct: 381 AFEQMPEARVPEIQRSNLAPVIMQLKALGIDNIVRFDFLTPPPAELIIRALELLSSLGAV 440 Query: 400 EGE-RLS-AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAI--LEEPPRMGNSDLG 455 + +L+ G +MA + DP +A +L+ A + + + IAA+ L+ + ++ Sbjct: 441 DDYAKLTKPLGMRMAEIALDPMMAKVLLVAPSFNCLSEILTIAAMVNLQGTVWVQHAGDK 500 Query: 456 VAFSRNQPAWQQRSQQLLKRLNVR-----GGEADSSLIAPLLAGAFADRIA-RRRGQDGR 509 + ++ + L LNV G+ DS L A A RGQ R Sbjct: 501 RSAESHRRKFAVEEGDHLTYLNVYQAFVTKGKKDSKWCRDNLLNYRALLRAVSIRGQLKR 560 Query: 510 YQLANGMGA 518 Y G+ Sbjct: 561 YLERFGIQV 569 >UniRef50_D1IUD7 Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IUD7_VITVI Length = 687 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 147/531 (27%), Positives = 242/531 (45%), Gaps = 51/531 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-------KIILLE 55 +LPV E L L ++L TG+GK+T +P +L I I + Sbjct: 63 TLPVWHQKEEFLQVLKANQSLILVGETGSGKTTQIPQFVLEAVDIETPDKRKKMMIACTQ 122 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRR+AA +V++R+AE ++ G+ VGY +R ++C T L+ +T+G+L R DP L Sbjct: 123 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE 182 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVI 175 ++ILDE HER+L D+ LL +V + R DLK+++MSATL+ ++ Q AP++ Sbjct: 183 RYKVIILDEAHERTLATDVLFGLLKEVLKN-RPDLKVVVMSATLEAEKFQGYFNGAPLMK 241 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GR PVE Y P + A+ + + +G +L+FL G EI+ ++++ Sbjct: 242 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEGAGDILVFLTGEEEIEDACKKISKE 301 Query: 236 IGS------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 I + V PLY L Q+K PAP + +V Sbjct: 302 IANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEV--------------------- 340 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQS 348 + L+ +S+AS QR+GRAGR +PG L ++ Q+ Sbjct: 341 -------------RVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQT 387 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQ 407 PEIL+S+L+ ++ L + G D ++D P L+ A +L LGAL+ + L+ Sbjct: 388 YPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKL 447 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQ 466 G+ M+ DP+++ MLV + + + I+A+L P + + A + + Sbjct: 448 GEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFG 507 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG 517 L LNV ++ F ++ A + + R QL M Sbjct: 508 HIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKAADNVRQQLVRIMA 558 >UniRef50_Q9FZC3 T1K7.25 protein n=12 Tax=Embryophyta RepID=Q9FZC3_ARATH Length = 726 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 155/568 (27%), Positives = 245/568 (43%), Gaps = 68/568 (11%) Query: 5 PVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAAR 62 PV L+ + +++ TG+GK+T LP L I + +PRR+AA Sbjct: 54 PVEKR---LVEEVQKNDILIIVGETGSGKTTQLPQFLYNAGFCREGKMIGITQPRRIAAV 110 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA+R+AE + G VGY +R + +TRL+ +T+G+L R DP LS ++I+ Sbjct: 111 TVAKRVAEECEVQLGQKVGYSIRFDDTTSGSTRLKYMTDGLLLREALLDPHLSRYSVIIV 170 Query: 123 DEFHERSLQADLALALLLDVQQGLR----------------------------------- 147 DE H+RS+ D+ LALL +Q+ Sbjct: 171 DEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQVQTTTRDANGPQQNGVLKGY 230 Query: 148 -----DDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAV 202 LKL+IMSA+LD + A V +GR FPV+ Y P D + Sbjct: 231 QGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDYVDATLVT 290 Query: 203 ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI------GSDVLLCPLYGALSLNDQRK 256 ++ G +L+FL G EI+ V+ + R+ +L ++ AL Q K Sbjct: 291 IFQIHFEEKPGDILVFLTGQDEIESVERLVQERLQNIPEDKRKLLPLAIFSALPSEQQMK 350 Query: 257 AILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQAS 316 PAP G RKV+LATNIAETS+TI GIR V+D + +DP G+ L S+A Sbjct: 351 VFAPAPTGFRKVILATNIAETSITIPGIRYVIDPGFVKARSYDPSKGMESLDVVPASKAQ 410 Query: 317 MTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMS 376 QR+GRAGR PG S L + + E+ ++PEI + +LS ++++L G D Sbjct: 411 TLQRSGRAGREGPGKSFRLYPEREFEKLEDSTKPEIKRCNLSNIILQLKALGIDDIVGFD 470 Query: 377 WLDQPPVVNLLAAKRLLQMLGAL--EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 ++D+P ++ A L LGAL +G+ + G +M+ L +P + L+ A + Sbjct: 471 FIDKPSRGAIIKALAELHSLGALADDGKLENPVGYQMSRLPLEPVYSKALILANQFNCLE 530 Query: 435 TAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL--------------KRLNVR 479 A+L E + ++ + L KR Sbjct: 531 EMLITVAVLSVESIFYDPREKREEARTSKNHFASVEGDHLTYLSVYRESDEFLEKRKAAG 590 Query: 480 GGEADSSLIAPLLAGAFADRIARRRGQD 507 G ++ + + + + +D Sbjct: 591 SGNNIDKIMKKWCKENYVNSRSLKHARD 618 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P37024 ATP-dependent RNA helicase hrpB n=204 Tax=Gammap... 981 0.0 UniRef50_Q1JXM2 ATP-dependent helicase HrpB n=1 Tax=Desulfuromon... 927 0.0 UniRef50_Q6LMK3 Hypothetical ATP-dependent helicase HrpB n=3 Tax... 904 0.0 UniRef50_C6D288 ATP-dependent helicase HrpB n=1 Tax=Paenibacillu... 899 0.0 UniRef50_Q11QG4 ATP-dependent helicase n=1 Tax=Cytophaga hutchin... 890 0.0 UniRef50_C8R296 ATP-dependent helicase HrpB n=1 Tax=Desulfurivib... 887 0.0 UniRef50_B0TA29 ATP-dependent helicase hrpb n=3 Tax=Bacteria Rep... 879 0.0 UniRef50_A0KP00 ATP-dependent helicase HrpB n=39 Tax=cellular or... 875 0.0 UniRef50_Q3A1P8 ATP-dependent helicase HrpB n=8 Tax=Desulfuromon... 875 0.0 UniRef50_Q4K5J8 ATP-dependent helicase HrpB n=14 Tax=Gammaproteo... 872 0.0 UniRef50_A1TWR1 ATP-dependent helicase HrpB n=3 Tax=Gammaproteob... 872 0.0 UniRef50_B7VJZ7 Helicase n=18 Tax=Vibrionales RepID=B7VJZ7_VIBSL 869 0.0 UniRef50_C0Z909 Putative ATP-dependent helicase n=2 Tax=Bacillal... 867 0.0 UniRef50_Q20WW0 ATP-dependent helicase HrpB n=23 Tax=Alphaproteo... 863 0.0 UniRef50_Q21KE4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 861 0.0 UniRef50_Q0EYD3 ATP-dependent helicase HrpB n=2 Tax=Proteobacter... 859 0.0 UniRef50_C5BNR7 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 858 0.0 UniRef50_A6Q8R2 ATP-dependent helicase HrpB n=1 Tax=Sulfurovum s... 857 0.0 UniRef50_D1P961 ATP-dependent helicase HrpB n=1 Tax=Prevotella c... 855 0.0 UniRef50_A5VN69 ATP-dependent helicase HrpB n=36 Tax=Proteobacte... 851 0.0 UniRef50_B3EB95 ATP-dependent helicase HrpB n=1 Tax=Geobacter lo... 850 0.0 UniRef50_C1AEB6 ATP-dependent helicase n=1 Tax=Gemmatimonas aura... 850 0.0 UniRef50_Q15YM0 ATP-dependent helicase HrpB n=1 Tax=Pseudoaltero... 847 0.0 UniRef50_Q0FF79 DEAD/DEAH box helicase n=1 Tax=Rhodobacterales b... 845 0.0 UniRef50_A8H0E4 ATP-dependent helicase HrpB n=20 Tax=Shewanella ... 845 0.0 UniRef50_A4XYS1 ATP-dependent helicase HrpB n=13 Tax=Gammaproteo... 845 0.0 UniRef50_C7LWJ1 ATP-dependent helicase HrpB n=1 Tax=Desulfomicro... 844 0.0 UniRef50_C0QI12 HrpB n=1 Tax=Desulfobacterium autotrophicum HRM2... 840 0.0 UniRef50_Q3BYY2 ATP-dependent helicase HrpB n=20 Tax=Bacteria Re... 840 0.0 UniRef50_A9DCL0 ATP-dependent helicase HrpB n=1 Tax=Shewanella b... 839 0.0 UniRef50_A8IJC9 ATP-dependent helicase n=43 Tax=cellular organis... 837 0.0 UniRef50_B9ZJ54 ATP-dependent helicase HrpB n=1 Tax=Thioalkalivi... 834 0.0 UniRef50_A0L6K8 ATP-dependent helicase HrpB n=1 Tax=Magnetococcu... 831 0.0 UniRef50_A0YC48 ATP-dependent helicase HrpB n=1 Tax=marine gamma... 830 0.0 UniRef50_Q72BU1 ATP-dependent helicase HrpB n=3 Tax=Desulfovibri... 829 0.0 UniRef50_C5S692 ATP-dependent helicase HrpB n=1 Tax=Allochromati... 826 0.0 UniRef50_B5JVW3 ATP-dependent helicase HrpB n=1 Tax=gamma proteo... 826 0.0 UniRef50_Q1ZIP8 Hypothetical ATP-dependent helicase HrpB n=1 Tax... 823 0.0 UniRef50_B8DNU5 ATP-dependent helicase HrpB n=2 Tax=Proteobacter... 822 0.0 UniRef50_A1SSH4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteob... 820 0.0 UniRef50_Q31I73 DEAH-box ATP-dependent helicase HrpB n=1 Tax=Thi... 819 0.0 UniRef50_B6WQJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 818 0.0 UniRef50_Q0VPK1 HrpB protein n=1 Tax=Alcanivorax borkumensis SK2... 817 0.0 UniRef50_Q6ALG3 Related to ATP-dependent helicase n=1 Tax=Desulf... 817 0.0 UniRef50_D2UGH8 Probable atp-dependent rna helicase protein n=1 ... 817 0.0 UniRef50_D2QWI1 ATP-dependent helicase HrpB n=1 Tax=Pirellula st... 809 0.0 UniRef50_Q3IHM3 ATP-dependent helicase n=3 Tax=Alteromonadales R... 809 0.0 UniRef50_B4X2F5 ATP-dependent helicase HrpB n=1 Tax=Alcanivorax ... 802 0.0 UniRef50_Q313C3 ATP-dependent helicase HrpB n=1 Tax=Desulfovibri... 799 0.0 UniRef50_A8LHX9 ATP-dependent RNA helicase n=30 Tax=Alphaproteob... 797 0.0 UniRef50_Q1GIW4 ATP-dependent helicase HrpB n=3 Tax=Rhodobactera... 796 0.0 UniRef50_Q1D7W0 ATP-dependent helicase HrpB n=3 Tax=Cystobacteri... 793 0.0 UniRef50_Q2RRT0 ATP-dependent helicase HrpB n=19 Tax=Bacteria Re... 792 0.0 UniRef50_B8J0D1 ATP-dependent helicase HrpB n=1 Tax=Desulfovibri... 784 0.0 UniRef50_A3Y8Y8 ATP-dependent helicase HrpB n=1 Tax=Marinomonas ... 784 0.0 UniRef50_D1N9R3 ATP-dependent helicase HrpB n=1 Tax=Victivallis ... 780 0.0 UniRef50_C8WC01 ATP-dependent helicase HrpB n=3 Tax=Zymomonas mo... 780 0.0 UniRef50_A5GWY8 HrpA-like helicase n=1 Tax=Synechococcus sp. RCC... 778 0.0 UniRef50_UPI0000E0EA09 ATP-dependent helicase HrpB n=1 Tax=Rhodo... 773 0.0 UniRef50_UPI0001B58540 ATP-dependent helicase HrpB n=2 Tax=Actin... 771 0.0 UniRef50_B1ZU70 Helicase ATP-dependent domain protein n=5 Tax=Ve... 766 0.0 UniRef50_Q47W70 ATP-dependent helicase HrpB n=1 Tax=Colwellia ps... 765 0.0 UniRef50_Q5QVR0 Helicase, ATP-dependent n=1 Tax=Idiomarina loihi... 764 0.0 UniRef50_A4S6B1 Predicted protein n=2 Tax=Mamiellales RepID=A4S6... 755 0.0 UniRef50_B0SIC0 HrpA-like helicase n=2 Tax=Leptospira biflexa se... 755 0.0 UniRef50_D2JWV9 Putative pre-mRNA splicing factor n=1 Tax=Filoba... 751 0.0 UniRef50_C4DH66 ATP-dependent helicase HrpB n=5 Tax=Actinomyceta... 751 0.0 UniRef50_D0D680 ATP-dependent helicase HrpB n=1 Tax=Citreicella ... 750 0.0 UniRef50_Q7UT94 ATP-dependent helicase n=1 Tax=Rhodopirellula ba... 750 0.0 UniRef50_Q14562 ATP-dependent RNA helicase DHX8 n=78 Tax=Eukaryo... 749 0.0 UniRef50_Q09530 Probable pre-mRNA-splicing factor ATP-dependent ... 749 0.0 UniRef50_Q7PT33 AGAP007212-PA n=4 Tax=cellular organisms RepID=Q... 746 0.0 UniRef50_P43329 ATP-dependent RNA helicase hrpA n=101 Tax=Bacter... 746 0.0 UniRef50_Q6BRT9 DEHA2D13882p n=8 Tax=Saccharomycetales RepID=Q6B... 745 0.0 UniRef50_Q54MH3 Putative pre-mRNA-splicing factor ATP-dependent ... 742 0.0 UniRef50_UPI0001746914 ATP-dependent helicase HrpB n=1 Tax=Verru... 742 0.0 UniRef50_C0NP73 ATP-dependent RNA helicase DHX8 n=10 Tax=Dikarya... 741 0.0 UniRef50_P45018 ATP-dependent RNA helicase hrpA homolog n=53 Tax... 741 0.0 UniRef50_Q3JBJ6 ATP-dependent helicase HrpA n=3 Tax=Chromatiacea... 740 0.0 UniRef50_C4QEZ9 ATP-dependent RNA Helicase, putative n=21 Tax=Eu... 739 0.0 UniRef50_Q0C562 ATP-dependent helicase HrpB n=1 Tax=Hyphomonas n... 738 0.0 UniRef50_B0JZ95 Dhx16 protein n=5 Tax=Fungi/Metazoa group RepID=... 737 0.0 UniRef50_Q1N0P2 ATP-dependent helicase HrpA n=1 Tax=Bermanella m... 737 0.0 UniRef50_C0SAG2 Pre-mRNA-splicing factor ATP-dependent RNA helic... 736 0.0 UniRef50_Q65SL6 HrpA protein n=9 Tax=Pasteurellaceae RepID=Q65SL... 735 0.0 UniRef50_B6ADS3 DHX8/prp22-type ATP-dependent RNA helicase, puta... 735 0.0 UniRef50_B7VPK9 ATP-dependent helicase n=201 Tax=Bacteria RepID=... 734 0.0 UniRef50_A1U107 ATP-dependent helicase HrpA n=4 Tax=Gammaproteob... 731 0.0 UniRef50_O22899 Probable pre-mRNA-splicing factor ATP-dependent ... 731 0.0 UniRef50_P24384 Pre-mRNA-splicing factor ATP-dependent RNA helic... 729 0.0 UniRef50_A6W7E3 ATP-dependent helicase HrpB n=4 Tax=Actinomyceta... 729 0.0 UniRef50_A7AWE8 RNA helicase, putative n=2 Tax=Piroplasmida RepI... 728 0.0 UniRef50_Q3AZY8 ATP-dependent helicase HrpB n=7 Tax=Chroococcale... 727 0.0 UniRef50_O45244 Probable pre-mRNA-splicing factor ATP-dependent ... 727 0.0 UniRef50_Q10752 Pre-mRNA-splicing factor ATP-dependent RNA helic... 726 0.0 UniRef50_B2UM09 Helicase ATP-dependent domain protein n=1 Tax=Ak... 725 0.0 UniRef50_Q47MH0 ATP-dependent helicase HrpA n=13 Tax=Bacteria Re... 724 0.0 UniRef50_Q0RIL0 HrpA-like helicase, ATP-dependent n=12 Tax=Bacte... 724 0.0 UniRef50_A6VYA9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 724 0.0 UniRef50_A8HQ16 Predicted protein (Fragment) n=1 Tax=Chlamydomon... 723 0.0 UniRef50_Q6MIP3 Helicase n=1 Tax=Bdellovibrio bacteriovorus RepI... 722 0.0 UniRef50_C4M6S9 Helicase, putative n=3 Tax=Entamoeba RepID=C4M6S... 722 0.0 UniRef50_Q1N1U8 ATP-dependent helicase HrpB n=1 Tax=Bermanella m... 721 0.0 UniRef50_C4JEY7 ATP-dependent RNA helicase DHX8 n=25 Tax=cellula... 720 0.0 UniRef50_UPI000185C193 ATP-dependent helicase HrpB n=1 Tax=Coryn... 719 0.0 UniRef50_A9FJ06 ATP-dependent RNA helicase n=1 Tax=Sorangium cel... 718 0.0 UniRef50_Q5KGT3 Pre-mRNA splicing factor, putative n=7 Tax=Dikar... 717 0.0 UniRef50_Q6P404 DEAH (Asp-Glu-Ala-His) box polypeptide 38 n=9 Ta... 717 0.0 UniRef50_D1ADU7 ATP-dependent helicase HrpB n=6 Tax=Actinomyceta... 716 0.0 UniRef50_B4S0B6 ATP-dependent helicase HrpB n=2 Tax=Alteromonas ... 716 0.0 UniRef50_C6WNJ1 ATP-dependent helicase HrpB n=1 Tax=Actinosynnem... 716 0.0 UniRef50_C6MXH7 Helicase n=2 Tax=Legionella RepID=C6MXH7_9GAMM 716 0.0 UniRef50_Q54NJ4 Putative pre-mRNA-splicing factor ATP-dependent ... 714 0.0 UniRef50_B2ANS3 Predicted CDS Pa_6_9920 n=3 Tax=Saccharomyceta R... 714 0.0 UniRef50_C4Y9K0 Putative uncharacterized protein n=1 Tax=Clavisp... 714 0.0 UniRef50_C2CSI0 ATP-dependent helicase n=2 Tax=Corynebacterium R... 713 0.0 UniRef50_C1DAE5 HrpA n=2 Tax=Betaproteobacteria RepID=C1DAE5_LARHH 713 0.0 UniRef50_Q2LSZ0 ATP-dependent helicase n=1 Tax=Syntrophus acidit... 712 0.0 UniRef50_O60231 Putative pre-mRNA-splicing factor ATP-dependent ... 711 0.0 UniRef50_C4QXH4 DEAH-box RNA-dependent ATPase/ATP-dependent RNA ... 711 0.0 UniRef50_Q21LQ8 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 711 0.0 UniRef50_C5KUX0 ATP-dependent RNA helicase DHX8, putative n=1 Ta... 711 0.0 UniRef50_A0D4B2 Chromosome undetermined scaffold_37, whole genom... 709 0.0 UniRef50_A2C686 DEAD/DEAH box helicase:Helicase C-terminal domai... 709 0.0 UniRef50_Q92620 Pre-mRNA-splicing factor ATP-dependent RNA helic... 709 0.0 UniRef50_Q9P774 Pre-mRNA-splicing factor ATP-dependent RNA helic... 708 0.0 UniRef50_Q0S1M3 ATP-dependent helicase hrpA n=5 Tax=Corynebacter... 707 0.0 UniRef50_A7BE71 Putative uncharacterized protein n=1 Tax=Actinom... 706 0.0 UniRef50_B5JXZ9 ATP-dependent helicase HrpA n=1 Tax=gamma proteo... 706 0.0 UniRef50_Q2Y975 ATP-dependent helicase HrpA n=2 Tax=Proteobacter... 705 0.0 UniRef50_A7ASE9 RNA helicase, putative n=1 Tax=Babesia bovis Rep... 704 0.0 UniRef50_D1ZEJ8 Whole genome shotgun sequence assembly, scaffold... 704 0.0 UniRef50_Q75EQ9 AAR020Wp n=2 Tax=Saccharomycetaceae RepID=Q75EQ9... 702 0.0 UniRef50_A9GK92 ATP-dependent helicase HrpA n=2 Tax=Myxococcales... 702 0.0 UniRef50_C7JEP3 DNA helicase HrpB n=8 Tax=Acetobacter pasteurian... 702 0.0 UniRef50_B6AI28 Pre-mRNA-processing protein 8, putative n=1 Tax=... 701 0.0 UniRef50_A3WLA9 Helicase, ATP-dependent n=1 Tax=Idiomarina balti... 700 0.0 UniRef50_P53131 Pre-mRNA-splicing factor ATP-dependent RNA helic... 698 0.0 UniRef50_B8KHJ8 ATP-dependent helicase HrpA n=1 Tax=gamma proteo... 698 0.0 UniRef50_D1Y978 ATP-dependent helicase HrpB n=3 Tax=Propionibact... 696 0.0 UniRef50_A4BTJ3 ATP-dependent helicase HrpA n=1 Tax=Nitrococcus ... 695 0.0 UniRef50_UPI00016C44CB ATP-dependent helicase HrpB n=1 Tax=Gemma... 694 0.0 UniRef50_C0WHI1 ATP-dependent helicase n=4 Tax=Corynebacterium R... 694 0.0 UniRef50_B9XI99 Helicase-associated domain protein n=1 Tax=bacte... 694 0.0 UniRef50_Q47AH6 ATP-dependent helicase HrpA n=7 Tax=Betaproteoba... 693 0.0 UniRef50_C4QXR9 Putative uncharacterized protein n=1 Tax=Pichia ... 693 0.0 UniRef50_A3FQE8 Putative uncharacterized protein n=2 Tax=Cryptos... 693 0.0 UniRef50_Q2G8M4 ATP-dependent helicase HrpB n=5 Tax=Sphingomonad... 692 0.0 UniRef50_C7RBD8 ATP-dependent helicase HrpA n=1 Tax=Kangiella ko... 692 0.0 UniRef50_B6JZW3 ATP-dependent RNA helicase Prp16 n=1 Tax=Schizos... 691 0.0 UniRef50_Q7XIR8 Os07g0508000 protein n=4 Tax=Embryophyta RepID=Q... 690 0.0 UniRef50_Q1YSZ9 ATP-dependent helicase HrpA n=2 Tax=unclassified... 689 0.0 UniRef50_B0RGP0 ATP-dependent helicase n=3 Tax=Actinobacteria (c... 689 0.0 UniRef50_C5DJP0 KLTH0F17974p n=2 Tax=Saccharomycetaceae RepID=C5... 689 0.0 UniRef50_Q759P9 ADR224Wp n=2 Tax=Saccharomycetaceae RepID=Q759P9... 688 0.0 UniRef50_C5X1W0 Putative uncharacterized protein Sb01g037170 n=2... 688 0.0 UniRef50_D1N0X8 ATP-dependent helicase HrpA n=1 Tax=Victivallis ... 687 0.0 UniRef50_Q6AL39 Related to ATP-dependent helicase HrpA n=1 Tax=D... 686 0.0 UniRef50_D0LYT6 ATP-dependent helicase HrpB n=1 Tax=Haliangium o... 684 0.0 UniRef50_A2EVN8 Helicase, putative n=1 Tax=Trichomonas vaginalis... 684 0.0 UniRef50_B9Z2A4 ATP-dependent helicase HrpA n=1 Tax=Lutiella nit... 683 0.0 UniRef50_Q5CYX6 Prp16p pre-mRNA splicing factor. HrpA family SFI... 683 0.0 UniRef50_D1H6K3 Whole genome shotgun sequence of line PN40024, s... 682 0.0 UniRef50_B9WE17 Pre-mRNA-splicing factor ATP-dependent RNA helic... 682 0.0 UniRef50_Q5ANN5 Likely spliceosomal DEAD box ATPase n=3 Tax=Euka... 682 0.0 UniRef50_B2U9W9 ATP-dependent helicase HrpA n=11 Tax=Betaproteob... 682 0.0 UniRef50_Q31H28 ATP-dependent helicase HrpA n=1 Tax=Thiomicrospi... 681 0.0 UniRef50_UPI000050FB42 ATP-dependent helicase n=1 Tax=Brevibacte... 681 0.0 UniRef50_B6AHK6 Pre-mRNA-splicing factor ATP-dependent RNA helic... 681 0.0 UniRef50_A0L8U8 ATP-dependent helicase HrpA n=1 Tax=Magnetococcu... 681 0.0 UniRef50_Q0F3B4 ATP-dependent helicase HrpA n=1 Tax=Mariprofundu... 680 0.0 UniRef50_B7GWG2 ATP-dependent helicase HrpA n=17 Tax=Acinetobact... 679 0.0 UniRef50_C1ZJL9 ATP-dependent helicase HrpA n=1 Tax=Planctomyces... 678 0.0 UniRef50_Q01ZA3 ATP-dependent helicase HrpB n=2 Tax=Acidobacteri... 678 0.0 UniRef50_C8QXF3 ATP-dependent helicase HrpA n=1 Tax=Desulfurivib... 677 0.0 UniRef50_B0TXK9 HrpA-like helicase n=2 Tax=Francisella philomira... 677 0.0 UniRef50_A4X5M6 ATP-dependent helicase HrpA n=6 Tax=Actinomyceta... 676 0.0 UniRef50_A9WQ04 ATP-dependent helicase n=1 Tax=Renibacterium sal... 676 0.0 UniRef50_Q6FTI2 Strain CBS138 chromosome G complete sequence n=1... 676 0.0 UniRef50_A6DMD8 ATP-dependent helicase HrpB n=1 Tax=Lentisphaera... 675 0.0 UniRef50_A0Z814 Helicase, ATP-dependent n=3 Tax=unclassified Gam... 675 0.0 UniRef50_Q9H5Z1 Probable ATP-dependent RNA helicase DHX35 n=44 T... 675 0.0 UniRef50_Q11S69 ATP-dependent helicase n=2 Tax=Sphingobacteriale... 674 0.0 UniRef50_Q6CF95 YALI0B09053p n=1 Tax=Yarrowia lipolytica RepID=Q... 674 0.0 UniRef50_A9US44 Predicted protein n=1 Tax=Monosiga brevicollis R... 674 0.0 UniRef50_A5E397 Putative uncharacterized protein n=1 Tax=Loddero... 674 0.0 UniRef50_B3L2J4 Atp-dependant rna helicase, putative n=1 Tax=Pla... 673 0.0 UniRef50_B9ZMZ4 ATP-dependent helicase HrpA n=1 Tax=Thioalkalivi... 672 0.0 UniRef50_B0ECA9 Pre-mRNA-splicing factor ATP-dependent RNA helic... 672 0.0 UniRef50_A7AVM7 DEAH box RNA helicase, putative n=3 Tax=Piroplas... 671 0.0 UniRef50_B2JJC7 ATP-dependent helicase HrpA n=89 Tax=cellular or... 671 0.0 UniRef50_A6C1G8 ATP-dependent helicase HrpA n=1 Tax=Planctomyces... 670 0.0 UniRef50_C7ME24 ATP-dependent helicase HrpA n=1 Tax=Brachybacter... 669 0.0 UniRef50_A2EN72 Helicase, putative n=1 Tax=Trichomonas vaginalis... 669 0.0 UniRef50_C8NRG4 ATP-dependent helicase n=10 Tax=Corynebacterium ... 669 0.0 UniRef50_C5BR02 ATP-dependent helicase HrpA n=1 Tax=Teredinibact... 668 0.0 UniRef50_C5CA12 ATP-dependent helicase HrpA n=5 Tax=Micrococcace... 667 0.0 UniRef50_D1VDH3 ATP-dependent helicase HrpA n=1 Tax=Frankia sp. ... 666 0.0 UniRef50_C4KC73 ATP-dependent helicase HrpA n=1 Tax=Thauera sp. ... 666 0.0 UniRef50_Q55CD3 DEAD/DEAH box helicase n=2 Tax=Eukaryota RepID=Q... 665 0.0 UniRef50_B8FCF5 ATP-dependent helicase HrpA n=1 Tax=Desulfatibac... 664 0.0 UniRef50_Q482P9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteob... 662 0.0 UniRef50_B6BTD8 ATP-dependent helicase HrpA n=2 Tax=Betaproteoba... 662 0.0 UniRef50_D0LBQ9 ATP-dependent helicase HrpA n=2 Tax=Corynebacter... 661 0.0 UniRef50_B5GG28 ATP-dependent helicase n=3 Tax=Streptomyces RepI... 661 0.0 UniRef50_P15938 Pre-mRNA-splicing factor ATP-dependent RNA helic... 661 0.0 UniRef50_A5DRX8 Putative uncharacterized protein n=1 Tax=Loddero... 661 0.0 UniRef50_B9WL64 Pre-mRNA-splicing factor ATP-dependent RNA helic... 660 0.0 UniRef50_Q03319 Probable ATP-dependent RNA helicase prh1 n=2 Tax... 660 0.0 UniRef50_A5DZ49 Pre-mRNA splicing factor ATP-dependent RNA helic... 659 0.0 UniRef50_B2GLW1 ATP-dependent RNA helicase HrpA n=7 Tax=Bacteria... 659 0.0 UniRef50_Q1NTJ0 ATP-dependent helicase HrpA n=2 Tax=delta proteo... 659 0.0 UniRef50_D0MZQ2 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 658 0.0 UniRef50_C0W153 ATP-dependent helicase HrpB n=1 Tax=Actinomyces ... 657 0.0 UniRef50_Q4N829 RNA helicase, putative n=2 Tax=Theileria RepID=Q... 657 0.0 UniRef50_A8IHD9 DEAH-box nuclear pre-mRNA splicing factor n=2 Ta... 657 0.0 UniRef50_C0H5K5 Splicing factor, putative n=2 Tax=Plasmodium fal... 656 0.0 UniRef50_Q9VR29 CG3225 n=19 Tax=Neoptera RepID=Q9VR29_DROME 656 0.0 UniRef50_Q9BKQ8 Probable ATP-dependent RNA helicase DHX35 homolo... 656 0.0 UniRef50_A6W340 ATP-dependent helicase HrpB n=1 Tax=Marinomonas ... 655 0.0 UniRef50_A5DQ95 Putative uncharacterized protein n=2 Tax=Pichia ... 654 0.0 UniRef50_A5G2H1 ATP-dependent helicase HrpB n=2 Tax=Alphaproteob... 653 0.0 UniRef50_P20095 Pre-mRNA-splicing factor ATP-dependent RNA helic... 652 0.0 UniRef50_B9H2M0 Predicted protein n=9 Tax=Embryophyta RepID=B9H2... 652 0.0 UniRef50_A5AMC2 Putative uncharacterized protein n=2 Tax=Eukaryo... 652 0.0 UniRef50_B5ZE33 ATP-dependent helicase HrpB n=4 Tax=Acetobactera... 651 0.0 UniRef50_A6GDN5 ATP-dependent helicase HrpB n=1 Tax=Plesiocystis... 651 0.0 UniRef50_UPI000186CCEB ATP-dependent RNA helicase, putative n=1 ... 649 0.0 UniRef50_D2B686 ATP-dependent helicase HrpB n=1 Tax=Streptospora... 649 0.0 UniRef50_B2GHK7 ATP-dependent helicase n=7 Tax=Actinomycetales R... 649 0.0 UniRef50_C0QAN7 HrpA n=1 Tax=Desulfobacterium autotrophicum HRM2... 647 0.0 UniRef50_C8NU49 ATP-dependent helicase HrpA n=8 Tax=Corynebacter... 647 0.0 UniRef50_A2DQS5 Helicase, putative n=1 Tax=Trichomonas vaginalis... 647 0.0 UniRef50_Q0UY60 Putative uncharacterized protein n=1 Tax=Phaeosp... 647 0.0 UniRef50_A3M3Z2 ATP-dependent helicase n=1 Tax=Acinetobacter bau... 646 0.0 UniRef50_Q3SHC5 ATP-dependent helicase HrpA n=3 Tax=Betaproteoba... 645 0.0 UniRef50_B2UQA6 ATP-dependent helicase HrpA n=1 Tax=Akkermansia ... 644 0.0 UniRef50_A8ZWI2 ATP-dependent helicase HrpA n=1 Tax=Desulfococcu... 644 0.0 UniRef50_C9ZMN0 ATP-dependent RNA helicase, putative n=4 Tax=Try... 643 0.0 UniRef50_A7E6W3 Putative uncharacterized protein n=1 Tax=Sclerot... 642 0.0 UniRef50_Q1C7D5 ATP-dependent helicase HrpA n=4 Tax=Bacteria Rep... 642 0.0 UniRef50_Q9FZC3 T1K7.25 protein n=12 Tax=Embryophyta RepID=Q9FZC... 642 0.0 UniRef50_C2KSU4 HrpA family ATP-dependent helicase n=3 Tax=Mobil... 641 0.0 UniRef50_Q9H6R0 Putative ATP-dependent RNA helicase DHX33 n=37 T... 641 0.0 UniRef50_A4S4Y0 Predicted protein n=3 Tax=Mamiellales RepID=A4S4... 641 0.0 UniRef50_B0ECZ2 ATP-dependent RNA helicase, putative n=2 Tax=Ent... 640 0.0 UniRef50_C4LWD6 Helicase, putative n=10 Tax=Eukaryota RepID=C4LW... 640 0.0 UniRef50_B4JQ72 GH13648 n=1 Tax=Drosophila grimshawi RepID=B4JQ7... 639 0.0 UniRef50_D1IUD7 Whole genome shotgun sequence of line PN40024, s... 639 0.0 UniRef50_UPI0001925C54 PREDICTED: similar to DEAH (Asp-Glu-Ala-H... 638 0.0 Sequences not found previously or not previously below threshold: >UniRef50_P37024 ATP-dependent RNA helicase hrpB n=204 Tax=Gammaproteobacteria RepID=HRPB_ECOLI Length = 809 Score = 981 bits (2537), Expect = 0.0, Method: Composition-based stats. Identities = 809/809 (100%), Positives = 809/809 (100%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA Sbjct: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV Sbjct: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS Sbjct: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV Sbjct: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP Sbjct: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL Sbjct: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL Sbjct: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG Sbjct: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG 540 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG Sbjct: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG 540 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL Sbjct: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 Query: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA Sbjct: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 Query: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH Sbjct: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 Query: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ Sbjct: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 Query: 781 KEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 KEMKGRYPKHVWPDDPANTAPTRRTKKYS Sbjct: 781 KEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 >UniRef50_Q1JXM2 ATP-dependent helicase HrpB n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXM2_DESAC Length = 834 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 354/838 (42%), Positives = 486/838 (57%), Gaps = 35/838 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ +LP+LL L V+L A GAGK+T +PL LL + G +II+LEPRRL Sbjct: 1 MMPLPIDHILPQLLAELQTHDSVVLQAEPGAGKTTRVPLALLDAEWLQGQRIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA + A+ ++ L E+PG TVGY +R Q V TR+EVVTEGVLTR +Q DP L GVGL Sbjct: 61 AAVHAARYMSRQLGEEPGQTVGYTIRHQQAVSKQTRIEVVTEGVLTRRLQNDPTLDGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHER+LQADL +AL+ DV+ LRDDLK+L+MSATLD L PVV S+GR Sbjct: 121 IIFDEFHERALQADLGMALVGDVRAALRDDLKVLVMSATLDGAALADYFGGCPVVPSDGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 +PVE +L R + V+ A + + ++ G +L+FLPG EIQR LA R+ D Sbjct: 181 CYPVEVFHLGD--DDRLEVQVSRAVHKAVAEQPGDVLVFLPGAREIQRCCNALAGRLDGD 238 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 +L+ PLYGAL Q++AI P RKVVLATNIAETSLTIEG+R+V+D ER+ F+ Sbjct: 239 ILVLPLYGALPFEQQQQAIQPT--TRRKVVLATNIAETSLTIEGVRVVIDSGLERLMTFE 296 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 PRTG+ RL+T+R+SQAS+ QR+GRAGR G L + + PEIL+SDL+ Sbjct: 297 PRTGMNRLVTRRISQASVRQRSGRAGRTAAGACYRLWSPQAEAAMIDYVAPEILRSDLTS 356 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDP 418 L +EL+ WG ++ + W+D PP ++ AA LL L A++ +R L+ G+ M L P Sbjct: 357 LALELIAWGVTEADALPWVDAPPAAHMNAAFNLLLQLDAIDEQRRLTTVGRAMTRLPLHP 416 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMG--------NSDLGVAFSRNQPA------ 464 RLA MLV+A++++E A ++A +LE P +SDL + QP Sbjct: 417 RLARMLVAAEDENEQVLACQLAVVLESPQWFRSGQSDTVSDSDLLDHLEQWQPHGKKSSS 476 Query: 465 -----WQQRSQQLLKRLNVR---GGEADSSLIAPLLAGAFADRIARRRGQDG-----RYQ 511 Q +QL +RL +S + LL A+ DR+A++R + Sbjct: 477 RISPLAHQSYRQLCRRLGCSPTTTPSRNSVALGRLLIAAYPDRVAQKRDGSIEGSTDHFL 536 Query: 512 LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 L+NG GA L + +H WL+A + + SAS +A I A +D +L P V Sbjct: 537 LSNGRGARLSPRCRVRQHRWLVAVDV-EFSASGEALIHRASALDERQLDNMWPHPVNWQM 595 Query: 572 TVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 WDD+ + + G L + +P ++ +L IR GL LNWT E Sbjct: 596 ETVWDDSGQRVVTREARRWGALLLSSRP-HALDAEQALPIVLEQIRSGGLERLNWTKETL 654 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 LR R+ + DWP VDD +LL +L WL P + G+ L + L++ + L LL Sbjct: 655 CLRQRMAFVQQHQLVDDWPQVDDAALLDSLNVWLAPWLNGMSRLDQVAKLNLLEPLCSLL 714 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 W +Q+LD P TVP+GSRIA+ Y + + P LA ++QE+FG P I +GRVP++ Sbjct: 715 SWPQRQQLDELAPERLTVPSGSRIAVDYSDPHQPVLAAKLQELFGWQQTPRIGKGRVPVM 774 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 L LLSPA+RP+Q T DL++FW Y EV+KE+KGRYPKH WPDDP R KK S Sbjct: 775 LHLLSPARRPMQTTTDLANFWATTYDEVKKELKGRYPKHPWPDDPLQAPAQRGVKKRS 832 >UniRef50_Q6LMK3 Hypothetical ATP-dependent helicase HrpB n=3 Tax=Gammaproteobacteria RepID=Q6LMK3_PHOPR Length = 836 Score = 904 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 421/836 (50%), Positives = 561/836 (67%), Gaps = 29/836 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-------HPGINGKIIL 53 MS LP+ VLP+LLT L +PQ++L AP GAGKST LPL+LLA G+II+ Sbjct: 1 MSQLPIDTVLPDLLTTLAISPQLILKAPPGAGKSTRLPLELLASRSKAIRGGARFGRIIM 60 Query: 54 LEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPE 113 LEPRRLAARN+A L++ L E+ G+TVG R+R ++ V T+LE+VTEGV+TRM+Q+DPE Sbjct: 61 LEPRRLAARNIANYLSKQLGERVGETVGLRVRGESKVSKATQLEIVTEGVMTRMLQQDPE 120 Query: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPV 173 L G+ L+I DEFHERS+ AD ALAL L+VQ+ LRDDLKLL+MSATLD D L+ +LP+A Sbjct: 121 LKGIDLLIFDEFHERSIHADTALALALEVQEALRDDLKLLVMSATLDADALKGLLPDAGY 180 Query: 174 VISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 + S GR FPVE RY + H + ++ T ++L ESGS+L+FLPG GEI+R+ L Sbjct: 181 IESYGRCFPVEYRYKSVSDHYQLLESCCRETLQLLDAESGSILIFLPGAGEIKRLAGMLT 240 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R+ +VL+ PL+G LS Q++AI+PAP+G RKVVLATNIAETSLTIEGIRLVVDC + Sbjct: 241 ERVADNVLISPLFGQLSNEQQQQAIMPAPKGQRKVVLATNIAETSLTIEGIRLVVDCGLK 300 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R+A +DP+TG++RL R++Q+S QRAGRAGRLEPGI + L ++EQ R +PEIL Sbjct: 301 RIALWDPKTGISRLEQVRIAQSSAEQRAGRAGRLEPGICVRLYSEEQLSRQPMTPQPEIL 360 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMA 412 ++DL+ L MEL QWGC+D +++ W D PP LL ++RLLQ LG ++ +L+ G++ Sbjct: 361 RADLTSLAMELAQWGCNDASELRWSDMPPQPALLQSRRLLQQLGIMDQRFQLTDVGKQTQ 420 Query: 413 ALGNDPRLAAMLVSAKNDD---------EAATAAKIAAILEEPPR-MGNSDLGVAFSR-- 460 +G DPR A ML++A+ D TAA + A+LE+PPR M + DL + Sbjct: 421 TMGTDPRHAVMLIAAQQFDANHTSGSTLAMTTAALLVALLEDPPRGMNSPDLHFQLNLLE 480 Query: 461 -----NQPAWQQRSQQLLKRLNV---RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 +Q R++Q L +LN + IAP++A + DRIA RG DGRYQL Sbjct: 481 SGKLPRARQYQLRAKQHLAKLNQSASLSLSISAEWIAPIMAAGYPDRIALSRGTDGRYQL 540 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 +NG G ML A++ ++ L+ +++ D+R+ + D + L + P L + + Sbjct: 541 SNGQGVMLPADEPMANEAMLVVADVVKT-RQGDSRVFSCVATDSNRLQELLPHLFSEREW 599 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 ++WDD +G L A + L G+L ++ + P + +A+LN I KGLSVL W + Sbjct: 600 LDWDDKKGRLTAEKHLCCGKLILQRSVMDTPDPAKASEALLNAIMRKGLSVLPWNEKTSN 659 Query: 633 LRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 L R CA +WLP+ P +DDE+LLA E WLLP MTG+ +L+ + LD+ AL L Sbjct: 660 LLTRARCAHEWLPDLGLPEMDDETLLADAEQWLLPFMTGITTLKSIARLDLKAALEARLG 719 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 W + LD LP H+ VPTGSR IRY + PALAVRMQEMFGE T+P IA GRVPLVL Sbjct: 720 WEQAKTLDVVLPTHFQVPTGSRYPIRYQVGHKPALAVRMQEMFGEKTSPQIANGRVPLVL 779 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ELLSPAQRPLQIT+DL+ FW+G+YR+VQKEMKGRYPKHVWPDDPAN PTRRTKKY Sbjct: 780 ELLSPAQRPLQITQDLAAFWQGSYRDVQKEMKGRYPKHVWPDDPANHLPTRRTKKY 835 >UniRef50_C6D288 ATP-dependent helicase HrpB n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D288_PAESJ Length = 830 Score = 899 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 364/835 (43%), Positives = 501/835 (60%), Gaps = 31/835 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ AVLPELL AL +L A GAGK+T +PL LL ++G KI++LEPRRL Sbjct: 1 MKQLPIDAVLPELLQALRVGTNAVLVAEPGAGKTTRVPLALLQETWLDGRKIVMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+ A+ +A L E+ G+TVGYR+R + V TR+EVVTEGVLTRM+Q D L VG Sbjct: 61 AARSAAKYMAASLGEQVGETVGYRVRLDSKVSAKTRIEVVTEGVLTRMLQEDQALERVGA 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 V+ DEFHER L DL LAL L Q LR+DL+LLIMSATLD + + ++L AP++ S GR Sbjct: 121 VLFDEFHERHLHGDLGLALTLQSQSLLREDLRLLIMSATLDAEPVAELLGGAPIIQSSGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL-ASRIGS 238 ++PVE Y R + A E +R+ G +L+FLPGVGEI+R L S + S Sbjct: 181 AYPVETIYRSTRVEGRIESQAASTIVEAIRENEGDVLVFLPGVGEIRRTAGHLMQSGLAS 240 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 V + L+G L L Q A+ P G RKVVLAT+IAE+SLT+EGIR+VVDC RV +F Sbjct: 241 SVRIAELHGNLPLEAQDAAVAPCKPGERKVVLATSIAESSLTVEGIRIVVDCGLMRVPKF 300 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 PRTG+TRL T VSQAS QR GRAGRL PG+ L +++ ++PE+L++DL+ Sbjct: 301 SPRTGMTRLETVSVSQASADQRRGRAGRLAPGVCYRLWTEQEHPYLPQHNKPELLEADLA 360 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGND 417 L +EL WG ++P ++ WLD PP A LL++L AL+ R++++G +MA LG Sbjct: 361 PLALELSAWGTAEPGELMWLDAPPQAAYRQALELLKLLQALDEDGRITSRGTRMAKLGLH 420 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEP---PRMGNSDLGVAFSRNQPAWQQRSQQLLK 474 PRL ML+ A+ + A ++A +L E P N D+ + A + Sbjct: 421 PRLGFMLLKAEELNLLPEACELAGLLSERDLLPHERNVDVALRLEALYGAGGRMEADRGA 480 Query: 475 RLNVRGG--------------------EADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 ++ +S L+A A+ DRIA+RR DGRY LAN Sbjct: 481 VQRIKAQAKQWRQMVTNNSIERKGNWNWQGTSYAGLLIALAYPDRIAQRRA-DGRYLLAN 539 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G GA L LSR +L A L A ++RI LA +D+D L Q + Q ++VE Sbjct: 540 GRGAALPELQPLSRSAFLAAAELDD--AGSESRIRLAAELDLDMLEQAAGEQFQVEESVE 597 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 WD ++A RR+++G + +K P+ +PS +++ A+ +GI GL +L+ A QL+ Sbjct: 598 WDSGAQAVRARRRVRLGSIILKETPIQQPSPEQIAIALADGIASAGLGLLSMPKAARQLQ 657 Query: 635 LRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 R+ A+ WP V + +LLA + WLLPH+ G+ + L+ L++ Q L GL+ WG Sbjct: 658 ARMQLMARH--NSGWPDVSEAALLATVHDWLLPHLYGMKNKSDLQRLNMVQILEGLMSWG 715 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 +Q LD ++P H TVP+GSRI I Y + + P +AVR+QE+FG P +A GR+PL L L Sbjct: 716 QRQELDEQVPTHMTVPSGSRIPIDYSDPDAPFIAVRLQELFGLQETPRLAGGRLPLTLHL 775 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 LSP+QRP+Q+TRDL FW AY EV+K++KGRYPKH WPDDP PT R K + Sbjct: 776 LSPSQRPVQVTRDLRSFWNEAYFEVKKDLKGRYPKHYWPDDPYAAQPTNRVKPRT 830 >UniRef50_Q11QG4 ATP-dependent helicase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11QG4_CYTH3 Length = 826 Score = 890 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 334/831 (40%), Positives = 477/831 (57%), Gaps = 30/831 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRL 59 M+ P+A ++ E+ L+ V+L AP GAGKST LPL+LL + KIILLEPRR+ Sbjct: 1 MNQYPIAEIVEEIKETLNLQTTVILQAPPGAGKSTILPLELLKADWLEEKKIILLEPRRM 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+VAQR+A+LL E+ G TVGYR+R V TR+EVVTEG+LTR +Q+D L GVG+ Sbjct: 61 AARSVAQRMADLLGEEVGKTVGYRVRFDQRVSAQTRIEVVTEGILTRRLQQDNTLEGVGM 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL +DL+LAL D+QQ LR+DL++LIMSATLD + L +L +AP++ S+GR Sbjct: 121 VIFDEFHERSLHSDLSLALCRDLQQILREDLRILIMSATLDGENLSAILDKAPIITSKGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 +P++ RY + + + +++L++E+G +L+FLPGV EIQ+ L R G D Sbjct: 181 QYPIDVRYTSIDTNAPISGQITTVISKVLKEETGDILVFLPGVREIQQTAAALTERHG-D 239 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + + PLYG LSLN Q++AI P Q RKVVLAT+IAETSLTIEGI +V+D RV +FD Sbjct: 240 IAVRPLYGELSLNAQQEAIRPDAQQRRKVVLATSIAETSLTIEGIHIVIDSGLARVPKFD 299 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +G+T+L T +V+Q + QRAGRAGRL PGI++ L + + Q PEI ++DL+ Sbjct: 300 PNSGMTKLETVKVTQDAADQRAGRAGRLGPGIAIRLWPEATQQYLKPQRVPEIAEADLAP 359 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPR 419 L++EL QWG D M+W+ PP ++ A+ LLQ L A++ ++ G+ +A L PR Sbjct: 360 LVLELAQWGVRDIQSMTWITAPPSGSVDQARTLLQELDAIQNGVITEDGKALANLPTHPR 419 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMG---NSDLGVAFSRNQPAWQQRS------- 469 A +L+ K A + ILEE +G +D+ + Q + Sbjct: 420 TAHLLLKGKEHTILPLAIDLVCILEERDALGKHAGADISLRVDALQAWRAGKRFQGDTFI 479 Query: 470 --------QQLLKRLNVRGGEA--DSSLIAPLLAGAFADRIAR-RRGQDGRYQLANGMGA 518 Q K +++ D+ I L+A A+ +RIAR RY++AN Sbjct: 480 LERIERAVQSWRKIFSIKSSVYEFDTDSIGLLIAAAYPERIARLVDAASARYRMANSRNV 539 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 L ND L + EWL + + RI A ++ L + Q + WD+ Sbjct: 540 RLHENDVLVKEEWLAVAHAD--AGVGEGRIYWAAALNPMLLT----DRMVQEARIRWDET 593 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 +G L +IG LTV +PL + E A+ +R +GL + NW Q + R+L Sbjct: 594 KGVLLQQEETRIGSLTVTSKPLKEVDETLRAAALCEAVRKEGLKIFNWDEACVQWQARIL 653 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 +W P WP VD E LL LE WL ++ V K + + + L +L W + Sbjct: 654 SLKQWRPTEAWPNVDAEGLLQTLEDWLPFYLKQVKRREDFKKIPLPEVLHTILPWEQAKI 713 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNP-PALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 L P H VP+GS IA+ Y D P L+VR+QE+FG PT+ +GR +++ LLSP Sbjct: 714 LAKLAPTHIDVPSGSSIALEYKTDGSFPVLSVRLQELFGLTDTPTVNEGRTKVMIHLLSP 773 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 +P+Q+T+DL FW Y EV+KE++ RYPKH WP+DP N R K+ Sbjct: 774 GYKPVQVTQDLKSFWANTYPEVRKELRMRYPKHSWPEDPWNAEAVRGVKRK 824 >UniRef50_C8R296 ATP-dependent helicase HrpB n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R296_9DELT Length = 860 Score = 887 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 364/859 (42%), Positives = 493/859 (57%), Gaps = 54/859 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 S+LPV V+P+L L V+L+AP G+GK+T +P LL P + G KI+LL+PRRLA Sbjct: 3 STLPVHHVIPQLRRELARQAAVILTAPPGSGKTTLVPPALLDEPWLAGQKILLLQPRRLA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A +A+ NE G ++GYR+R ++ V TRLEV+TEG LTR +Q DPEL+G+GLV Sbjct: 63 ARLAATFMAQSRNETVGQSIGYRVRFESRVSAATRLEVLTEGTLTRQLQSDPELAGIGLV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL+ADLALAL DVQQGLR DLK+L+MSATLD++ L +L +APV+ +EG S Sbjct: 123 IFDEFHERSLEADLALALCRDVQQGLRPDLKILLMSATLDSEPLSALLDQAPVIGAEGES 182 Query: 181 FPVERRYLPL-----PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 FPV +L P + A A R+ G +L FLPG GEI+ + L+ Sbjct: 183 FPVSIEHLATAAGSFPYPREIAAQTAAAIRRAWREHPGDILAFLPGAGEIRLCHQLLSDN 242 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + PLYG L L Q A+ P P G R+++LAT+IAETSLTIEGI VVD +R Sbjct: 243 PPAATTIYPLYGDLPLAAQAAAVQPDPGGRRRIILATSIAETSLTIEGIHTVVDSGWQRR 302 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 RFDP +GL+RL T+R+SQA+ TQR GRAGRL PG L L + + PEIL + Sbjct: 303 PRFDPNSGLSRLTTRRISQAAATQRTGRAGRLGPGHCLRLWHPGEEQGLLPFEPPEILNA 362 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAAL 414 DL+ LL+EL WG +PA+++WLD PP A+ LL LGA++ R++ G+ + L Sbjct: 363 DLAPLLLELACWGVGNPAELTWLDPPPPGPCAQARELLLALGAVDQQGRVTPLGRLINEL 422 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM----GNSDLGVAFSRNQPAWQ---- 466 PRL ML+ A A +AA+L E + +DL + Q Sbjct: 423 PVHPRLGLMLLKAAEAGAGEIACDLAALLSERDLLKGQDKPADLDERLEALRRWRQASAR 482 Query: 467 ------------------------------QRSQQLLKRLNVRGGEADSSLIAPLLAGAF 496 + + QL + + + + LLA A+ Sbjct: 483 QTAAPDERRRPRQTLASGQEIDHAACRRVDRTASQLQRIIRHQESRGPTLDSGELLALAY 542 Query: 497 ADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVD 555 DRIARRR G G+Y+L+ G GA L D L+ E+L L + + RI LA ++ Sbjct: 543 PDRIARRRPGMRGKYKLSGGRGATLPTGDRLADQEYLAVAELD--AGRREGRIFLAGALN 600 Query: 556 IDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNG 615 L + P+ +Q + + WD G +K + QLT++V PLA P + + + +L Sbjct: 601 PAALPRLFPEQLQNREELYWDREAGAVKGQSVVCFKQLTLEVAPLADPDPEAVRRVLLQA 660 Query: 616 IRD------KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHM 669 I++ GLS+L W A +L+ RL+C +W PE +WP VDD+ L LE WL P + Sbjct: 661 IKESGETGKNGLSLLPWNDRARELQARLICIGQWQPEGNWPRVDDQYLSQHLEQWLGPWL 720 Query: 670 TGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAV 729 G+ + L+ LD+ L LD+ Q+ LD E+P H VP+GSR + Y D PP LAV Sbjct: 721 DGIKTAEQLRKLDLAAILAAQLDYQQQRYLDREVPTHLVVPSGSRRKLAYQPDRPPVLAV 780 Query: 730 RMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPK 789 R+QEMFG P IAQGRVP++L LLSPA RP+QIT DL FW Y +V+KE++GRYPK Sbjct: 781 RLQEMFGLEDTPMIAQGRVPVLLHLLSPAGRPVQITTDLRGFWDSGYHQVKKELQGRYPK 840 Query: 790 HVWPDDPANTAPTRRTKKY 808 H WPDDP APT R K Sbjct: 841 HHWPDDPRQAAPTARAKPR 859 >UniRef50_B0TA29 ATP-dependent helicase hrpb n=3 Tax=Bacteria RepID=B0TA29_HELMI Length = 874 Score = 879 bits (2273), Expect = 0.0, Method: Composition-based stats. Identities = 368/877 (41%), Positives = 504/877 (57%), Gaps = 75/877 (8%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M+SLP+ A+LP L AL +L AP GAGK+T +PL LL P + G+ II+LEPRRL Sbjct: 1 MTSLPIEAILPALKEALRVRTSTVLVAPPGAGKTTRVPLALLNEPWLAGRRIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR+ A+ +A L E G+TVG+R+R + VGP+T +EVVTEGVLTR +Q DP L VGL Sbjct: 61 AARSAARHMAVSLGEAVGETVGFRVRLETRVGPSTAIEVVTEGVLTRRLQADPALEDVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL LAL L Q LR+DL++L+MSATLD + + +L +AP++ SEGR Sbjct: 121 VIFDEFHERSLAADLGLALCLQSQALLREDLRILVMSATLDAEPVAALLGDAPIIASEGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR--IG 237 F V+ RYL + VA E L + G +L+FLPG+ EI+RV+ +L Sbjct: 181 PFSVDTRYLERRTEGTMEAQVARTVREALLNDEGDILVFLPGMKEIRRVEARLVEMGVGT 240 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 V +CPL+G L L+ Q +AI P P G+RKVVLAT+IAETSLT+EGIR+VVD RV R Sbjct: 241 GKVRICPLHGGLPLDAQDRAIAPCPPGIRKVVLATSIAETSLTVEGIRVVVDSGLMRVPR 300 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 F PRTG++RL T VS+AS QR GRAGRL PG+ L + + R A +S PEIL++DL Sbjct: 301 FSPRTGMSRLETVPVSRASADQRRGRAGRLGPGVCYRLWTQPEDLRLAPRSAPEILEADL 360 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-------LSAQGQK 410 + L +EL WG DP ++ WLD PP L A+ LL LGALE + ++ QG++ Sbjct: 361 APLALELAAWGIKDPGELQWLDPPPAAAFLHARELLIQLGALEADGQRGTGGLITPQGRR 420 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM------GNSDLGVAFSRNQPA 464 MA G PRLA M++ A A ++AAIL E ++DL + Sbjct: 421 MAEAGLHPRLAHMVLQAIPMGLGKVACRLAAILSERDFFRDGGVRRDADLRLRLEALDGN 480 Query: 465 WQQ----------------------RSQQLLKRLNVRGGEADS----------------- 485 ++ + L + +R D Sbjct: 481 FRDSEDVGAAFGVAVDLAARRRILAEASALQRAFGLRDEPCDEKSEAYVASQPEKVLPVF 540 Query: 486 ---------------SLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 LLA AF DRI +RR DGR+ L NG GA L Sbjct: 541 MEEDVCRSDRWESCVDACGLLLAFAFPDRIGQRR-PDGRFLLRNGRGAAFADVQPLCNSP 599 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 +L+A L P++RI+LA V+ ++L + +++ V W+ + ++A +R ++ Sbjct: 600 YLVAAELDD--QGPESRIILAAPVESEDLERYFGGQIEKERLVVWERSSQAVRARQRERL 657 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 G L ++ + LA + + +A+L G+R++GL++L+WT A Q + RL A+W + DW Sbjct: 658 GALVLRERSLADVEPEAIQKALLAGVREEGLAILSWTKAARQFQERLQFMARW--DDDWL 715 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 DE+LLA LE WL PH+ G+ S L+ LD+ + L L W ++ LD P H VP Sbjct: 716 DASDEALLAKLEDWLGPHLYGMKSRNDLQRLDVREILEATLTWDRRRELDECAPTHILVP 775 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 +G R+ I Y P LAVR+QEMFG P I +GRVPL L LLSPAQRP+Q+T+DL+ Sbjct: 776 SGRRVPIDYGTPEAPVLAVRLQEMFGLKDTPRICRGRVPLTLHLLSPAQRPVQVTQDLAS 835 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FW+ AY EV+K++KGRYPKH WP+DP PT R + Sbjct: 836 FWRDAYFEVRKDLKGRYPKHYWPEDPREAIPTSRVRP 872 >UniRef50_A0KP00 ATP-dependent helicase HrpB n=39 Tax=cellular organisms RepID=A0KP00_AERHH Length = 1056 Score = 875 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 401/817 (49%), Positives = 526/817 (64%), Gaps = 14/817 (1%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 +SSLP+ +VLP L A+D V+L AP GAGKST LPL+L+ + G+II+LEPRRLA Sbjct: 242 LSSLPIVSVLPALFAAIDNHTSVILQAPPGAGKSTLLPLELVRQNRLPGRIIMLEPRRLA 301 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARN+A LA L EK G+ +G R+R ++ TRLE+VTEGVLTRM+Q+DPEL+GV LV Sbjct: 302 ARNIAGFLARQLGEKVGERIGLRVRGESRTSAATRLEIVTEGVLTRMLQQDPELTGVSLV 361 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL AD ALA ++ QQGLRDDLKLL+MSATLD L+ +LPEAPVV SEGR Sbjct: 362 IFDEFHERSLHADTALAFAIESQQGLRDDLKLLVMSATLDGMALEILLPEAPVVRSEGRG 421 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FP++ Y P Q + V E L +GSLL+FLPG GEI+R+ + L R+ +V Sbjct: 422 FPIDYHYRPANRQQWLEPQVGAVVLEALAAHAGSLLVFLPGQGEIERLAQWLEGRLPDEV 481 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L PLYG L + Q+ AI PAP G RK+VL TN+AETSLTIEGI +VVD ER A FD Sbjct: 482 TLAPLYGRLDMAAQQAAIEPAPAGRRKLVLTTNVAETSLTIEGISVVVDSGLERRASFDI 541 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 ++G+TRL T+ +++AS TQRAGRAGRL PG+ L + E ER A QS P+IL +L+GL Sbjct: 542 KSGVTRLETRPIAKASATQRAGRAGRLGPGVCYRLWSSEVQERLAEQSPPDILTQELTGL 601 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL---EGERLSAQGQKMAALGND 417 L++ QWG ++ LD PP + +A+RLL LGA+ ++L+ G+ MAA G Sbjct: 602 LLDAAQWGAK-VEELPLLDMPPAAAVASAQRLLVSLGAMKPEGEQQLTPAGRAMAAFGTH 660 Query: 418 PRLAAMLVSAKND------DEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQ 471 PRLA ML+ A+ A AA + A+LEE R G+ L V F R Q A +Q + + Sbjct: 661 PRLARMLLRARELEAEGLTGIVADAAFLVALLEEDLR-GSERLSVLFHRRQGALRQSAAR 719 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEW 531 +RL R A + L A A+ DRI + R RYQL+ G+ L Sbjct: 720 WFERLGTRPASAQGQWLGLLCALAWPDRIGKLRS-GSRYQLSGGVSCDLVEGHPCQGQGA 778 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIG 591 LIA + G +RI +A +++DELV++ P+LV + +WD+ + ++A R+ +G Sbjct: 779 LIAIEM--GQNERGSRIFIAEPIELDELVRQLPELVSERQWFDWDEREERVRAERQQVLG 836 Query: 592 QLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 +L + +PL S+++ + +L GIR KGL VL W +E L RL CA WLP+ WPA Sbjct: 837 ELVLSQRPLTDLSDEQKGRCLLQGIRRKGLHVLPWDDASEGLLARLRCARDWLPDEGWPA 896 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 +D+ SLLA LE WLLP ++G+ L LK LD+ LR L W + +RLD LP H+T PT Sbjct: 897 MDEASLLADLEQWLLPAVSGMTRLEQLKKLDMSDILRQSLPWPLPKRLDEALPGHFTAPT 956 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 GSR+ IRY P + VR+QEMFG+A P +A GRV LV+ELLSPAQRPLQIT DL+ F Sbjct: 957 GSRVRIRYQLGQAPVIPVRIQEMFGQAATPCVADGRVALVVELLSPAQRPLQITADLAAF 1016 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 W G+Y V+KEMKGRYP+H WPD+P PTR TKK Sbjct: 1017 WAGSYELVKKEMKGRYPRHYWPDNPLEAMPTRVTKKK 1053 >UniRef50_Q3A1P8 ATP-dependent helicase HrpB n=8 Tax=Desulfuromonadales RepID=Q3A1P8_PELCD Length = 844 Score = 875 bits (2261), Expect = 0.0, Method: Composition-based stats. Identities = 353/847 (41%), Positives = 477/847 (56%), Gaps = 56/847 (6%) Query: 5 PVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAARN 63 P+ ++L ++ AL +L A GAGK+T +PL LL P + G +I++LEPRRLAA N Sbjct: 9 PIDSILGDVALALRSNQAAVLQAEPGAGKTTRVPLALLDEPWLAGQRILMLEPRRLAATN 68 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+ +A L E+ G TVGY +R TRLEVVTEG+LTR +Q DP L GVGLVI D Sbjct: 69 AARYMAGCLGEQVGATVGYAIRFDRRTSAATRLEVVTEGILTRRLQADPTLEGVGLVIFD 128 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHER+L +DLALAL D Q GLR+DLKLL+MSATLD + + ++L +AP++ GR PV Sbjct: 129 EFHERNLNSDLALALCRDAQLGLREDLKLLVMSATLDGEPVARLLGDAPLLRCPGRCHPV 188 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL-ASRIGSDVLL 242 E YLP + VA A R+ G +L+FLPG GEI R ++ L + D + Sbjct: 189 EVTYLPREPQGPLAEVVARAVRRAARETEGDMLVFLPGAGEILRCRDLLLREPVVDDPQI 248 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 LYG L +Q +A+ P P RKVVLATNIAETSLTIEG+R+V+D R +RFD + Sbjct: 249 NVLYGDLPFAEQERALRPGP--RRKVVLATNIAETSLTIEGVRVVIDSGFMRQSRFDAGS 306 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL RL++ R++ A+ QRAGRAGRL PG L + + PEI +DL+ L + Sbjct: 307 GLPRLVSVRITAANADQRAGRAGRLGPGRCYRLWTEATHGGLLPFAAPEIRSADLTLLAL 366 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLA 421 EL +WG D + WLD PP L AA+ LL+ LGAL+ +RL+ GQ MA L PR+A Sbjct: 367 ELARWGVPDAMSLCWLDAPPAGALSAARALLRQLGALDARQRLTRLGQAMAELPAHPRIA 426 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 A+LV+ + + A A +AA+LEE + N+ A LL+RL++ Sbjct: 427 ALLVAGRGNPLAPWACDLAALLEERDLLRG---------NRRASHATDSDLLERLDILQA 477 Query: 482 E---------------------------------------ADSSLIAPLLAGAFADRIAR 502 D+ I LL A+ DR+AR Sbjct: 478 WRTKASLPEGVDASACRTVDRAARAWRRRSRLEQGAQTAMPDADSIGGLLLAAYPDRLAR 537 Query: 503 -RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQ 561 R RY LANG G L L E+L+A + G + DA I A V + + Sbjct: 538 QREVGSKRYVLANGQGGCLSPRSGLRGTEYLVAVHV-SGGRTGDAFIHQASSVGLASIES 596 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 + + V WD AQ + A +G L + +P+ + S DE+HQA+L GIR GL Sbjct: 597 FYAERLGWQRRVFWDAAQQRIVAREERSLGALLLASRPV-EASGDEMHQALLEGIRQLGL 655 Query: 622 SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSL 681 L W EA QL+ R+ A+ E WP + D++L +L WL P + G+ LK L Sbjct: 656 DALPWEDEARQLQYRVAVMAEAYAEQSWPDLSDDALRESLAEWLSPFVAGMRRAADLKRL 715 Query: 682 DIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNP 741 D+ + LR LDW + LD+E+P H VP+G R+ + Y ++ PP LAV++QE+FG A P Sbjct: 716 DLVEVLRSRLDWSHLRLLDTEVPTHLAVPSGHRVRLTYQQNGPPILAVKLQELFGLADTP 775 Query: 742 TIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAP 801 ++A GRV + L LLSPA+RPL +T+DL FW Y EV++EM GRYPKH WPDDP P Sbjct: 776 SVAGGRVAVQLHLLSPARRPLAVTQDLRHFWDHVYPEVRREMAGRYPKHPWPDDPWRAIP 835 Query: 802 TRRTKKY 808 TR TK+ Sbjct: 836 TRSTKRK 842 >UniRef50_Q4K5J8 ATP-dependent helicase HrpB n=14 Tax=Gammaproteobacteria RepID=Q4K5J8_PSEF5 Length = 839 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 377/840 (44%), Positives = 508/840 (60%), Gaps = 34/840 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M+SLP+ VLP L TAL + +L AP GAGK+T +PL LL + G+ I++LEPRRL Sbjct: 1 MNSLPIDEVLPALRTALATRHEAVLEAPPGAGKTTRVPLALLDQDWLAGQTILMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+RLA L EK G+TVGYR+R + VGP TR+EVVTEG+LTR +Q DP L GVGL Sbjct: 61 AARAAAERLASELGEKVGETVGYRIRLDSKVGPRTRIEVVTEGILTRRLQDDPALEGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISE 177 +I DEFHERSL ADLALAL L ++ RD+ LK+L+MSATL+ +RL +L +AP++ SE Sbjct: 121 LIFDEFHERSLDADLALALSLSGRELFRDEQPLKILLMSATLEGERLSTLLGDAPILRSE 180 Query: 178 GRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 GR +PV +R+ P + + V E L ESGSLL+FLPG EI+RV +QLA + Sbjct: 181 GRMYPVTQRWGRPFQPGEFIEPRVVQTVLEALNDESGSLLVFLPGQAEIRRVHQQLAEAL 240 Query: 237 GSDVLLC--PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 G + PL+G L L QR AI PAP G RKVVLATNIAETSLTI G+R+VVD R Sbjct: 241 GERSEILLCPLHGELDLAAQRAAIDPAPSGKRKVVLATNIAETSLTINGVRVVVDAGLAR 300 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 V RFDP +G+TRL TQR+S+AS TQRAGRAGRLEPG+ L + +Q E+ AA + EILQ Sbjct: 301 VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSADQQEQLAAYASAEILQ 360 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAA 413 +DL+GL ++L +WG + P Q+ WLD PP A+ LL LGAL + L+ GQ MA Sbjct: 361 ADLAGLALQLARWGVT-PNQLVWLDAPPSAAYAQAQDLLVRLGALNDDGSLTRHGQAMAE 419 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDL-----------GVAFSRNQ 462 L PR+A +L+ ++ A A +AA+L E + + +R Sbjct: 420 LPAHPRIAHLLLRGQSLGLAPMACNVAALLGERDILRGAGADLHSRLVLLGGEERAARGA 479 Query: 463 PAWQQRSQQLLKRLNVR---------GGEADSSLIAPLLAGAFADRIA-RRRGQDGRYQL 512 QR++QL ++ + LLA A+ DR+A +RR Y+L Sbjct: 480 QGGVQRARQLARQYRGYLRGQPEAAVADPEHPRWLGALLALAYPDRVAQQRRPGGAEYRL 539 Query: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 ANG A+ D+L + WL+ L + RI LA D + V+Q D Sbjct: 540 ANGRAALFSETDSLMKQPWLVIADLGSRQGQREERIYLAADFDPVLFDSVLAEQVRQVDQ 599 Query: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 ++WD+ +G L+A R+ ++G+L + +PL+ E QA++N +R KGL +L WT E Q Sbjct: 600 LDWDEREGVLRAERQRKVGELVLSREPLSGLDESARTQALVNLVRRKGLELLPWTPELRQ 659 Query: 633 LRLRLLCAAKWLPE----YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688 + R+ + E WP V D +LL LE WL P++ V L +L++ + Sbjct: 660 WQARVALLRQLDLEATGTSQWPDVSDGALLKGLEQWLQPYLGKVSRLSHFANLELAGIIH 719 Query: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748 LL W + QRLD P H TVP+GS I + Y ++PP LAVR+QE+FG A P IA GR Sbjct: 720 NLLPWPLPQRLDELAPHHLTVPSGSSIRLDYS-EHPPILAVRLQELFGLAQTPRIAGGRQ 778 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 + L LLSPA+RP+Q+T+DL++FW+ Y EV+K++KGRYPKH WPDDP T R K Sbjct: 779 VVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLIAEATARVKPR 838 >UniRef50_A1TWR1 ATP-dependent helicase HrpB n=3 Tax=Gammaproteobacteria RepID=A1TWR1_MARAV Length = 824 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 366/823 (44%), Positives = 495/823 (60%), Gaps = 21/823 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+ +LPEL L LL AP GAGK+T +PL LL P +G KI++LEPRRLAAR Sbjct: 2 LPIDGILPELTRTLAKTTTALLQAPPGAGKTTRVPLALLDAPWRDGRKILMLEPRRLAAR 61 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 + A+ +A L E PG TVGYR R V TR+EVVTEG+LTR+IQ DP L V+ Sbjct: 62 SAARYMARQLGEAPGQTVGYRTRLDTRVSGTTRIEVVTEGILTRLIQNDPMLEDYAAVLF 121 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERSLQADL LAL+ + QQ LR+DL+LL+MSATLD + +ML + PV+ SEGR+FP Sbjct: 122 DEFHERSLQADLGLALVRESQQALREDLRLLVMSATLDTAPIAKMLGDVPVISSEGRAFP 181 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V+ Y PL R D V E+L ++GS+L+FLPG GEI+RV +QLA ++ +V+L Sbjct: 182 VDVLYRPLSRSARMVDHVTAVVLEVLGDQAGSVLVFLPGAGEIRRVAQQLAGQLPENVVL 241 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYG L +Q +AI PAP G RKVVLAT IAETSLTIEG+R+VVD Q+R A FDP + Sbjct: 242 APLYGNLKSEEQDRAIAPAPDGSRKVVLATAIAETSLTIEGVRVVVDAGQQRRAVFDPNS 301 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 G+TRLIT RVS+AS QR GRAGR+EPG+ L ++ + A + EI ++DL+ L++ Sbjct: 302 GMTRLITGRVSKASAEQRKGRAGRVEPGVCYRLWSESEQFGLAEFTPAEIQEADLAPLVL 361 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAK-RLLQMLGALEGERLSAQGQKMAALGNDPRLA 421 EL QWG P Q++W+D PP + A L + ++ G+ LG PRLA Sbjct: 362 ELAQWGARSPDQVAWIDAPPQAHWQQAVDLLQWLDLLDADGAITDHGKAARDLGMHPRLA 421 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGN---SDLGVAFSRNQPAWQQRSQQLLKRLNV 478 M++ + AA++AA+LEE +G +DL + R + V Sbjct: 422 HMVLRGRALGFGQLAAELAALLEERDLLGPGSGADLHERIRVVRGQRPPRGLDTARLQAV 481 Query: 479 RGGEAD------------SSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDA 525 R ++ + +LA A+ DRIARRR G+ RYQL+NG GA L +D Sbjct: 482 RQAAKRLCREPGSRSEPVATEVGRVLAQAYPDRIARRRSGEAPRYQLSNGKGASLREHDP 541 Query: 526 LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW 585 L+R WL+A L + +A I LA VD+ +L Q +Q+ + WDD +GT+ A Sbjct: 542 LARENWLVAADLD--GKAREATIYLAAPVDLGDLEQDLAAHIQEREEALWDDKRGTVVAR 599 Query: 586 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP 645 ++G L + +PL + + + + Q +L+ +R KGL L W A Q + R+ A P Sbjct: 600 HVRKLGALILAEKPLQQVAPELIQQGLLDAVRRKGLDRLPWNEAARQWQARVQLLATQFP 659 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 WP V D +LLA +E+WL P M G+ L LD+ AL LLD+ QQ LD P Sbjct: 660 -GHWPDVTDSALLAGVESWLAPFMAGMQRWSDLARLDLTSALNSLLDYPQQQELDELAPK 718 Query: 706 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT 765 +PTG ++ + Y DN P LA ++Q +FG PT+A GRVP+V LLSPAQRPL +T Sbjct: 719 ALAIPTGQKVTLDYTADNGPVLAAKLQALFGWTETPTVAGGRVPVVTHLLSPAQRPLAVT 778 Query: 766 RDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 DL+ FW+ AY +V+KE++GRYPKH WP+DP + TKK Sbjct: 779 ADLASFWQNAYPQVRKELRGRYPKHPWPEDPLTAQAQQGTKKR 821 >UniRef50_B7VJZ7 Helicase n=18 Tax=Vibrionales RepID=B7VJZ7_VIBSL Length = 832 Score = 869 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 388/819 (47%), Positives = 545/819 (66%), Gaps = 14/819 (1%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LP+ AV+P+LL + Q++L A GAGKST+ PLQL+ + GKII+LEPRRLA Sbjct: 12 LPQLPIEAVMPDLLAGVQTHTQLILKAAPGAGKSTFFPLQLVKTNAVQGKIIMLEPRRLA 71 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARN+A LA L EK G+++G+R+R ++ TRLE+VTEG++TRMIQ DPEL+GV +V Sbjct: 72 ARNIATYLARQLGEKVGESIGFRVRGESKTSSATRLEIVTEGIMTRMIQTDPELTGVDMV 131 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ AD ALA L++Q LRDDLK+++MSATLD LQ +LP+A V S+GR+ Sbjct: 132 IFDEFHERSIHADTALAFSLEIQDALRDDLKVVVMSATLDQHALQSLLPDAKYVESQGRT 191 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FPV+ RY PL +++ +A ++ +ESGSLL FLPGV I++V+ QL ++ SD+ Sbjct: 192 FPVDFRYQPLGSNEYLAPKMANVIRSLMEKESGSLLAFLPGVSAIKQVESQL-GQLVSDI 250 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 +CPLYG LS Q+++I P+ +G RKVVLATNIAETSLTIEGIRLVVD ERVA+FD Sbjct: 251 DVCPLYGQLSFEQQQRSIAPSVKGRRKVVLATNIAETSLTIEGIRLVVDSGLERVAKFDL 310 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 +TG+T+L ++SQ+S QRAGRAGR+E G+ + L ++ Q + A EPEIL SDLS L Sbjct: 311 KTGITKLEQVKISQSSAEQRAGRAGRIEEGLCVRLYSETQLMQQPAVPEPEILHSDLSSL 370 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPR 419 + EL QWG + ++ WLD PP + K+LLQ L L+ + ++ G++ LG +PR Sbjct: 371 VSELTQWGAASAEELQWLDVPPKASTEQGKQLLQNLELLDANGQFTSMGKQAQRLGIEPR 430 Query: 420 LAAMLVSAKNDDEAAT-AAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ-------QRSQQ 471 +A+ML+ A+ + A A +AA L E P +D+ + R + QR++ Sbjct: 431 IASMLIKAQQNSPALLNVAIVAAALLEEPERNVTDIQHSLHRLKQRKHSKNSVVMQRAKS 490 Query: 472 LLKRLN--VRGGEADSSLIAPLLAGAFADRIAR-RRGQDGRYQLANGMGAMLDANDALSR 528 L +LN + + D SL+ +L AF DRIA+ R ++LANG GA + +D L+ Sbjct: 491 LASKLNHHLDLSQVDESLLPLVLCFAFPDRIAQSRSATGCAFRLANGHGAEVRDDDRLAN 550 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 +E+++ L++ + I LA +DI +L L + D +WD+ +G L A R+ Sbjct: 551 NEYIVVIDLMRTAGRASQ-IFLATPIDIVQLEASFSGLFTREDYADWDEKRGRLVAEERV 609 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD 648 +G+L + + L +P D++ QA+LN I GL L+WT+ A+QL R+ CA W+PE+D Sbjct: 610 LLGKLIISTKALPEPDSDQISQALLNYIARCGLERLHWTSSAKQLVERVRCAQLWMPEHD 669 Query: 649 WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYT 708 WPA+DD SL+ L+ WL P++ G+ S +GL ++ I QAL L W + Q +D LP +Y Sbjct: 670 WPAMDDASLIEHLDEWLSPYLNGIKSAKGLSNVSIEQALSAYLGWPLNQEIDQWLPTNYL 729 Query: 709 VPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDL 768 +PTGS+ +IRY + P ++VRMQE+FGE +P IAQGR +VLELLSPAQRPLQIT+DL Sbjct: 730 MPTGSKKSIRYQYKSEPMISVRMQEVFGEQDSPLIAQGRKKVVLELLSPAQRPLQITQDL 789 Query: 769 SDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 + FW GAY+EVQKEMKGRYPKH WPDDPAN T +TK+ Sbjct: 790 AGFWAGAYKEVQKEMKGRYPKHPWPDDPANHVATTKTKR 828 >UniRef50_C0Z909 Putative ATP-dependent helicase n=2 Tax=Bacillales RepID=C0Z909_BREBN Length = 834 Score = 867 bits (2241), Expect = 0.0, Method: Composition-based stats. Identities = 358/839 (42%), Positives = 504/839 (60%), Gaps = 37/839 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M++LP+ VLPEL+ L +L A GAGK+T +PL L ++ + I++L PRRL Sbjct: 1 MNALPINEVLPELVNTLREETNAVLVAAPGAGKTTRVPLALREEAWLHNRRIVMLVPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A +A LL E+ G TVGYR++ ++ VGP TR+EV+TEG+LTRM+Q DPELS VGL Sbjct: 61 AARQAAAYMAALLGEEVGQTVGYRVKRESRVGPGTRIEVMTEGILTRMLQDDPELSDVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHER+L ADL LAL L Q R+DL++L+MSATLD + + +L AP+V S+GR Sbjct: 121 VIFDEFHERNLHADLGLALSLQAQSLFREDLRILVMSATLDAEPVSALLGNAPIVSSKGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR-IGS 238 FPVE R+L P R ++A+ + LRQE G +L+FLPG EI RVQE L +G+ Sbjct: 181 MFPVETRFLTSPMQGRLEEAIVQMIFQALRQEEGDMLVFLPGAKEIHRVQELLEQSGVGT 240 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 ++ + PLYG LS +Q KAI P G RK+VLAT IAETSLT+EG+R+V+D +R+ RF Sbjct: 241 NIRIAPLYGNLSQEEQDKAIQPGKTGERKIVLATTIAETSLTVEGVRIVIDSGLKRIPRF 300 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 PRTG+TRL T +VS+AS QR GRAGRL PG+ L +++ Q PEI+++DL+ Sbjct: 301 SPRTGMTRLETAKVSRASADQRRGRAGRLAPGVCFRLWTEQEDRMLIPQQAPEIMEADLA 360 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGND 417 L +EL WG ++ WL+ PP + A+ LL LGAL+ ++++A G+ +A + Sbjct: 361 VLALELALWGVGSSDELDWLNPPPKPAMAQAQELLLQLGALDERKQITAHGRALAGMAVH 420 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG------NSDLGVAFSRNQPAWQQRSQ- 470 PRL M+ A E A ++A +LEE + ++D+ + ++S Sbjct: 421 PRLGHMIQKANELGEGELACELAVLLEERDIVRGRQASVDADMRTRVELLRRVGNKQSGG 480 Query: 471 -----------QLLKRLNVRGGEADSSLI----------APLLAGAFADRIARRRGQDGR 509 +L K ++ LLA A+ DRIA+RR DGR Sbjct: 481 TELPIDVGACQRLWKEAAHFKRVWGNNQSAGTSTRTEATGRLLAFAYPDRIAQRRA-DGR 539 Query: 510 YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 Y L NG GA L +++A L D+RILLA V+ EL++ C + + Sbjct: 540 YLLRNGRGAAFSVQQPLVASPYIVAAELDD--QGADSRILLAASVEESELLKDCAMQITE 597 Query: 570 SDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE 629 V W+ + G +++ ++ ++G + + P A+ S DE+ A L+GI+ +GL +L W + Sbjct: 598 RMNVWWEHSAGAVRSRKQKRLGAILLADMP-AESSPDEVLTAFLDGIKGEGLEILPWNRQ 656 Query: 630 AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 A Q R RLL + E DWP V+DESLLA+LE WL PH+ G L+SL + L Sbjct: 657 ARQYRERLLFMHRL--EEDWPNVEDESLLASLEEWLAPHVYGFKRKEDLQSLSVTTLLES 714 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 +L W +++LD P H VP+GS+I + Y P L++R+QE+FG +P I +GRVP Sbjct: 715 MLSWEQRRQLDEHAPTHVIVPSGSKIPVDYSNPAAPVLSIRLQELFGWQDSPRIGRGRVP 774 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L L LLSPA RP+Q+TRDL+ FW AY EV+K++KGRYPKH WPDDP PT RT+ Sbjct: 775 LTLHLLSPAHRPVQVTRDLASFWAHAYFEVKKDLKGRYPKHYWPDDPLAAIPTNRTRPR 833 >UniRef50_Q20WW0 ATP-dependent helicase HrpB n=23 Tax=Alphaproteobacteria RepID=Q20WW0_RHOPB Length = 877 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 361/864 (41%), Positives = 508/864 (58%), Gaps = 60/864 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 + LP+ AVL L +AL +L AP GAGK+T +PL LL P + KII+LEPRR+A Sbjct: 15 TPLPIDAVLDRLGSALAANNVAVLVAPPGAGKTTRVPLALLDAPWLGAKKIIMLEPRRIA 74 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A+ L E+ GDTVGYR+R + V TR+EVVTEG+ +RMI DPEL+G+ + Sbjct: 75 ARASAERMAKTLGERVGDTVGYRVRFGSKVSRATRIEVVTEGIFSRMILDDPELNGIAAI 134 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSL ADL LAL D Q GLR+DL++L+MSAT+D R+ ++L +APV+ S GR+ Sbjct: 135 LFDEFHERSLDADLGLALARDAQVGLREDLRILVMSATIDGARVGKLLGDAPVIESLGRA 194 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR-IGSD 239 +PVE RYL + +A A A LR+ GS+L FLPG EI+R + L R + + Sbjct: 195 YPVETRYLGRKPDAPLERQMAEAIASALRENPGSVLAFLPGAAEIRRTETMLRERVVDAS 254 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + + PL+GAL + Q +AI PAP+G RKVVLAT+IAETSLTIEG+R+VVDC RV R++ Sbjct: 255 IEIVPLFGALDASVQDRAIQPAPKGCRKVVLATSIAETSLTIEGVRIVVDCGMARVPRYE 314 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P GLTRL T R S+A++ QR GRAGR EPG+ L + Q A ++PEIL +DLS Sbjct: 315 PDIGLTRLETVRASRAAVDQRRGRAGRTEPGVCYRLWDEPQTASLPAYTQPEILSADLSS 374 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDP 418 LL++L QWG DPAQ+++LD PP L A+ LL LGAL+ R++ +G+ + AL P Sbjct: 375 LLLDLAQWGVGDPAQLAFLDAPPAPALKEARALLAELGALDTEGRITDEGKSLRALALPP 434 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS-DLGVAFSRNQPAWQQR---SQQLLK 474 RLA M+V A+ AA IAAIL E G+S DL + + QR ++QL + Sbjct: 435 RLARMIVDAQRQGCGEDAAAIAAILTERGLGGDSVDLDARLEQFRRDRSQRAISARQLAQ 494 Query: 475 RLNVRGGEAD-----------------------------------------------SSL 487 R + Sbjct: 495 RWAAPSAPSPLAGEGRGGGSTSTASVRGTPTPNPSPQGGGESRRARGEAAPSQQGAGELT 554 Query: 488 IAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDAR 547 +LA AF DR+A+ RG +G + LANG GA +D AL+R ++ L +A + R Sbjct: 555 TGGMLALAFPDRVAKNRG-NGSFVLANGRGAAIDKTAALARAPYIAVAELTGTAA--NGR 611 Query: 548 ILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDE 607 ILLA + ++E+ R + D + +D L+ R+ + +T+ P+A + Sbjct: 612 ILLAAPITLEEIEARFAAEIDAVDDISFDRVALALRGRRKRTLHAITLSEAPMAVVPSEA 671 Query: 608 LHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD---WPAVDDESLLAALETW 664 + +G+ GL L W+ +Q R R+ K + WP + D +L A E W Sbjct: 672 TARVFADGLIAAGLDKLPWSKSLKQWRDRVTFLRKAEGDASQKLWPDLSDAALAEAREAW 731 Query: 665 LLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 L+P + +L+ + + D+ AL GLL W ++ RL+ E P H+ PTG+++AI Y + Sbjct: 732 LVPALFDKTALKDVSAGDLSDALMGLLPWDLRARLEREAPTHFEAPTGTQLAIDYEAEQG 791 Query: 725 PALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMK 784 P +AVR+QE+FG T+P++A G VPLVLELLSPAQRP+Q+TRDL FW+G+Y V+ +++ Sbjct: 792 PTIAVRLQELFGLTTHPSLAGGAVPLVLELLSPAQRPVQVTRDLPGFWRGSYAAVRTDLR 851 Query: 785 GRYPKHVWPDDPANTAPTRRTKKY 808 GRYP+H WP+DPA PTRR K Sbjct: 852 GRYPRHPWPEDPAGAPPTRRVKPR 875 >UniRef50_Q21KE4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=Q21KE4_SACD2 Length = 864 Score = 861 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 359/857 (41%), Positives = 480/857 (56%), Gaps = 63/857 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAA 61 SLP+ LP + L + +++L AP GAGK+T +PL LL P NGK II+LEPRRLAA Sbjct: 12 SLPINDALPAIEATLLASNELVLEAPPGAGKTTVVPLALLNAPWRNGKKIIVLEPRRLAA 71 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 RN A R+A LL E+ +TVGYR+R NCVG NT +EVVTEGV TRM+Q DP L V +VI Sbjct: 72 RNAASRMASLLGERCAETVGYRVRMDNCVGANTVIEVVTEGVFTRMLQADPTLDDVAIVI 131 Query: 122 LDEFHERS----------LQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA 171 DEFHERS Q+++ + + +K L+MSATL+ +L L A Sbjct: 132 FDEFHERSLDADLGLALLQQSNVLYGDMRE------QPIKTLVMSATLNGSQLSDYLGGA 185 Query: 172 PVVISEGRSFPVERRYLPLPAHQRFDDA-VAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 PVV SEGR FPV+ Y Q+ A A A + + + GS+L+FLPG EI+ Sbjct: 186 PVVTSEGRMFPVDVAYSDPYTPQQDSAARAAQAVNKAIAEYKGSILVFLPGRKEIEACAR 245 Query: 231 QLA-----SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 L + + +CPLYG LSL DQ++AI PA G KVVLATNIAE+SLTIEG+ Sbjct: 246 ALRNWVEAGELPKALAICPLYGDLSLADQQQAIAPAGAGTTKVVLATNIAESSLTIEGVS 305 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 +VVD +R AR+DP TG+TRL R+S+AS QRAGRAGRLEPG+ + L +K Q A Sbjct: 306 IVVDSGLQREARYDPNTGMTRLNLCRISKASAEQRAGRAGRLEPGVCIRLWSKSQQSELA 365 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-- 403 + PEI +D+ L ++LLQWG +D AQ+ WLD P A LL+ L AL+ Sbjct: 366 QYASPEIQHADMVPLALQLLQWGEADCAQIPWLDAPAPARYTQAIELLEQLEALKDNGGG 425 Query: 404 --LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN 461 L+A G+ MA L PRLA MLV AK A +AA+L E +G +++G FSR Sbjct: 426 ISLTALGEAMAGLPVHPRLAHMLVVAKQLALQDLACTLAALLSERD-IGTANMGADFSRR 484 Query: 462 QPAWQQRSQQ------LLKRLNVRGGE-------------------------ADSSLIAP 490 Q LKRLN + IA Sbjct: 485 VHWLLQPQGAPKQLQGALKRLNALKKMLAQQLNRVTSPSLERALAVSEVIVLSQQEQIAL 544 Query: 491 LLAGAFADRIARRRGQD-GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARIL 549 LLA AF DRIAR R + +Y LANG A L +D+L EWL+ + I Sbjct: 545 LLACAFPDRIARARKNNPTQYLLANGRQANLFNDDSLVGEEWLVVAEASSQQGRSNDIIR 604 Query: 550 LALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELH 609 LA + + L Q + + + EWD+ + + +R+ +G + + + L + Sbjct: 605 LAAPISLALLQQAFSAKLVEKNVCEWDENANRIVSEQRVALGAIILSAKQLTQADPALRV 664 Query: 610 QAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHM 669 A+ I KGL VL WTA+A LR RL + +WP+ DE LL A++ WL P++ Sbjct: 665 AAVRALINKKGLGVLEWTADAINLRARLQLLHSV--DTNWPSWSDELLLGAIDDWLSPYL 722 Query: 670 TGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAV 729 V++ L+ + I +AL L W Q LD P + VP+G + I Y ++ PP +A Sbjct: 723 HSVNTGADLRKVKIAEALTATLSWEQQVELDKLAPVSFCVPSGRDVPIDYSQN-PPVIAA 781 Query: 730 RMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPK 789 ++QE+FG A P+I G+VPL++ LLSPA +PLQ+T+DL FW+GAY EV+KEMKGRYPK Sbjct: 782 KLQELFGSAIAPSIVNGKVPLLIHLLSPAGKPLQVTQDLMSFWRGAYTEVKKEMKGRYPK 841 Query: 790 HVWPDDPANTAPTRRTK 806 H WPDDP PTR+TK Sbjct: 842 HPWPDDPIMAMPTRKTK 858 >UniRef50_Q0EYD3 ATP-dependent helicase HrpB n=2 Tax=Proteobacteria RepID=Q0EYD3_9PROT Length = 861 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 330/858 (38%), Positives = 484/858 (56%), Gaps = 53/858 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M LP+ VLPE+ L +++L AP GAGK+T +P+ LL + + II+LEPRRL Sbjct: 1 MPLLPIHDVLPEIKEKLTTHNRLVLQAPPGAGKTTAVPIALLGEGWLGDRQIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AARN A R+A LL EK G+TVGY++R +CV T++ VVTEG+LTR +Q DPEL+ L Sbjct: 61 AARNAAARMAFLLGEKVGETVGYQIRQDSCVSDKTKILVVTEGILTRKLQADPELTNTAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL+LAL L QQ LR+DLK+L+MSATL D + +L AP++ SEGR Sbjct: 121 VIFDEFHERSLHADLSLALCLQSQQILREDLKILVMSATLHTDAVASLLHHAPIIESEGR 180 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEM-------LRQESGSLLLFLPGVGEIQRVQEQL 232 SFPVE RYL QR + ++ + + G+ L+FLPGV EI ++ Q+ Sbjct: 181 SFPVENRYLDHAIRQRNSNPQQQLMIDLTNTVNTFIHEHEGNCLVFLPGVKEINQLARQI 240 Query: 233 ASRIGS----DVLLCPLYGALSLNDQRKAIL-PAPQGMRKVVLATNIAETSLTIEGIRLV 287 + +++ PL+G+L Q AI PA +GMRK+VLATNIAETS+TIEGI V Sbjct: 241 KQLLDRESIRHIVIAPLHGSLKKQQQDLAIAAPADKGMRKIVLATNIAETSITIEGISCV 300 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ 347 +D ERV + P +G+ RL T+ +SQ S QR+GRAGRL G + + Q R Sbjct: 301 IDSGLERVLDYSPASGMNRLTTRAISQDSAVQRSGRAGRLSAGTCYRMWSATQQSRLLKH 360 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSA 406 + PEIL SDL+ L++EL WG +D ++ W+D PP + AK LLQ LGA++G ++A Sbjct: 361 ASPEILHSDLTSLVLELANWGVTDVNELQWMDLPPHGAIEQAKTLLQQLGAIDGLGTITA 420 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQ--- 462 G+ M LG PRLA M+++A ++A A IA++L E + N+D Sbjct: 421 HGRDMLRLGTHPRLAHMMLAAVKLNQAYHACLIASLLSEKDIFLANADKSADIHDRLNVL 480 Query: 463 ---------------PAWQQRSQQLLKRLN------VRGGEADSSLIAPLLAGAFADRIA 501 Q + +R+ + D LLA A+ DRIA Sbjct: 481 LHGKSNHHGIDHQQCKRIMQSADDFFRRVKQCSKAGLNKERPDHHYSGVLLAYAYPDRIA 540 Query: 502 RRRGQD-GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELV 560 +RR + RY L+NG GA++ HE+L+ L + +A I LA + ++L Sbjct: 541 KRRNPNEARYLLSNGKGAVIPPYIQHHLHEYLVVANLD--ARQGEASIYLAADISAEQLQ 598 Query: 561 QRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSE-DELHQAMLNGIRDK 619 +++Q + VEW+D ++ + +IG++ ++ + + + Q +L IR++ Sbjct: 599 TCFSGIIEQEERVEWNDEAQRVEVKQVSRIGKIMLQESTVHHSDSREAVQQCLLQAIREQ 658 Query: 620 GLSVLNWTAEAEQLRLRLLCAAKWLP----------EYDWPAVDDESLLAALETWLLPHM 669 G+ LNW+++A L+ R+ L E P +++L LE WL PH+ Sbjct: 659 GVGCLNWSSKARSLQQRVQFIHHHLDKSAAVKNMFAEQPLPDFSEQALSDRLEDWLQPHL 718 Query: 670 TGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAV 729 +SL+ +LD++ L L W QQ + P +VP+GS + I Y + P LAV Sbjct: 719 NHENSLKQCFNLDLHSLLLNQLSWQQQQLIKQLAPERISVPSGSAVTIDYSDPEQPVLAV 778 Query: 730 RMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPK 789 R+QE+FG PT+ G L + LLSPA++P+Q+T+DL+ FW+ Y +V+KE++G+Y + Sbjct: 779 RLQEVFGLFDTPTLLNGACKLTMHLLSPARKPMQVTQDLNSFWQTTYHDVKKELRGKYKR 838 Query: 790 HVWPDDPANTAPTRRTKK 807 H WPDDP T +TKK Sbjct: 839 HYWPDDPFTAEATSKTKK 856 >UniRef50_C5BNR7 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=C5BNR7_TERTT Length = 854 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 346/840 (41%), Positives = 479/840 (57%), Gaps = 35/840 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 + LP+A +L EL L Q++L AP GAGK+T +PL L + G KI++LEPRR+ Sbjct: 11 LPQLPIATLLDELALTLQHHHQLVLDAPPGAGKTTLVPLALRTAEWLRGRKIVMLEPRRV 70 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA+ A R+AELL E G T+GY MR + +T +EVVTEG+LTR +Q+DP L L Sbjct: 71 AAKAAAVRMAELLEEPVGKTIGYTMRLEQKCSRDTIIEVVTEGILTRRLQQDPSLDDTAL 130 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDD---LKLLIMSATLDNDRLQQMLPEAPVVIS 176 VI DEFHERS+ +DL LAL + ++ LRDD LKLL+MSATLD + +L AP + S Sbjct: 131 VIFDEFHERSMHSDLGLALCMQSRELLRDDTDPLKLLVMSATLDAQAIADLLGGAPKLTS 190 Query: 177 EGRSFPVERRYLPL-PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GRSFPVE Y P+ +A + L + SG L+FLPG EI +++ L+ Sbjct: 191 AGRSFPVEVTYAQHTPSRADLVSILATTVVQALNKHSGDCLVFLPGQREIHQLKAALSES 250 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQG---MRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + ++V + PLYG+LSL +Q+KAI P RKVVLAT+IAETSLTI+G+ +VVD Sbjct: 251 LSNEVAVMPLYGSLSLAEQQKAISPLTTDQIKTRKVVLATDIAETSLTIDGVHIVVDSGL 310 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R +FDPRTG+TRL T +S AS QRAGRAGRL PG + + AAQ+ PEI Sbjct: 311 ARKPKFDPRTGMTRLHTGPISIASSIQRAGRAGRLAPGNCYRCWTETAQHQRAAQATPEI 370 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER---LSAQGQ 409 LQSDL+ L M+LLQWG +DP Q+ WLD+PP A LL L A++ L+ GQ Sbjct: 371 LQSDLAPLAMQLLQWGVNDPQQLQWLDEPPKPAFQQACDLLFRLKAIDTPTACVLNEHGQ 430 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE---------------PPRMGNSDL 454 MA L PRLA +L+ A AA +AAIL E G L Sbjct: 431 AMAMLPLHPRLAHLLLVATEFGRLPLAASVAAILSEAIPDIGQHTDLMFVVETVEGRRSL 490 Query: 455 GVAFSRNQPAWQQRSQQLLKRLNVRGG----EADSSLIAPLLAGAFADRIARRRGQDG-R 509 +Q+ LL L+ + D + + L+A A+ DRIAR+R Q R Sbjct: 491 PSQHRAWLQRIRQQRGLLLSLLSHNREANSTDEDLNALGLLIASAYPDRIARKRTQSRNR 550 Query: 510 YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 Y LANG A L ND+L+ EWL + + + RI A + ++L Q Sbjct: 551 YLLANGRAAQLSPNDSLAGTEWLAIADIGGVTNQSEDRIFAAASLTKEDLNSGLAAQKTQ 610 Query: 570 SDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE 629 +EW + + A +++IG + V+ + + + ++ A LN IR +GL VL W ++ Sbjct: 611 ERVIEW--RENRVLAQDQVRIGAILVEQRAASNVTAEDRTAATLNYIRLQGLGVLPWNSD 668 Query: 630 AEQLRLRLLCAAKWLPEYD-WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688 Q R R+ + WP + DE+L+ ++ WL P++ + +L+ LK LD+ + Sbjct: 669 INQWRARVALVRENDNSSALWPDLSDEALMETIDNWLAPYLIDIDNLQSLKRLDLASIVH 728 Query: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748 L W QQ L+ P VP+G+ I+I Y + +PP L V++QEMFG P+I G+V Sbjct: 729 AQLPWSQQQLLEQLAPTRIKVPSGNHISINYLQ-SPPQLEVKLQEMFGCEETPSIINGKV 787 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L++ LLSPA+RPLQIT+DL+ FW+ Y V+KEMKGRYPKH WPDDP + T+ TK+ Sbjct: 788 ALLIHLLSPARRPLQITQDLAGFWRNGYEAVKKEMKGRYPKHPWPDDPLSAQATQLTKRR 847 >UniRef50_A6Q8R2 ATP-dependent helicase HrpB n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q8R2_SULNB Length = 827 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 324/834 (38%), Positives = 490/834 (58%), Gaps = 34/834 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M +LP+ VLP++ L +++L AP GAGK+T LPL LL P + GK II+LEPRRL Sbjct: 1 MQTLPITHVLPKVKEKLIHHNRLVLQAPPGAGKTTALPLALLDEPWLEGKKIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A R+ A R+AELL EK G +GY+++ ++ T++ +VTEG+LTR +Q DP L V L Sbjct: 61 AVRSSAARMAELLGEKVGQRIGYQIKMESVQSRATKILIVTEGILTRKLQNDPALESVAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHERSL ADL+LAL L+ Q LR+D+K+L+MSATL+ + +L APV+ S+GR Sbjct: 121 IIFDEFHERSLHADLSLALALESQSVLREDMKILVMSATLNTAAISTLLDNAPVIESQGR 180 Query: 180 SFPVERRY----LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +FPVER + P P + + ++L +E G++L+FLPGV +I+ V++ L Sbjct: 181 AFPVERIHLDAGTPQPTLKTLPSYIHKLLLKLLAEEEGNILVFLPGVRQIKAVEKLLNES 240 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + LYG LS Q +AI P+G KVVL+TNIA+TSLTIEGI++V+D + V Sbjct: 241 RIKNTYISTLYGNLSKEAQDRAIKAPPKGTGKVVLSTNIAQTSLTIEGIKIVIDSGLQNV 300 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 + F+P +G+ +L ++ +S+ + QRAGRAGRL G + HL K + PEIL + Sbjct: 301 SVFNPFSGMNKLESKFISKDAAIQRAGRAGRLSAGKAYHLWHKSRI--LQKHDTPEILSA 358 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAAL 414 DLS L++EL QWG D +SW+D PP+ + A+ LL+ LGAL+ +++ G+ M + Sbjct: 359 DLSQLVLELAQWGNDDINALSWMDTPPITAIHHARALLKQLGALDSNGHITSHGEAMGSY 418 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM----GNSDLGVAFSRNQPAWQQR-- 468 G PRLA M++ AK D + A+ +A ++ E ++DL Q+ Sbjct: 419 GLHPRLAHMMLKAKEMDLSYEASLLAVLVSEKDIYSSAYTSADLRERVITLHDVAQKANV 478 Query: 469 -----SQQLLKRL--NVRG------GEADSSLIAPLLAGAFADRIARRRGQD-GRYQLAN 514 + + L N R + + LLA A+ DRIA+ R ++ G Y L+N Sbjct: 479 SSKYVDIKQCRYLLENARRIEKNQTSTLHTEQLGILLAFAYPDRIAQLRHRNKGTYLLSN 538 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G GA L ++D L +L L + S DA I A+ + + ++ + + V Sbjct: 539 GKGAYLHSDDTLFNSPYLAISDLD--AKSTDAAIYKAIALSLADIETHLGT--ETQEMVT 594 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 W++A+ +K + G+L +K L + E+ + +L+ I GL++L+W EA+ LR Sbjct: 595 WNEAEARVKVRKVECFGKLILKETQLKSTASPEVLEVLLDEIEALGLNILHWNKEAKNLR 654 Query: 635 LRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 R+ + ++P DE+LL ++ WL P++ V +L+ ++LD++ L GLL + Sbjct: 655 ERVNFLHLH--DENFPDFSDENLLDTMDKWLAPYLQNVTTLKACRNLDLHNILLGLLSYE 712 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 Q+L+ +PA + V +GS+I I Y + P LAVR+QE+FG P I G+V L+L L Sbjct: 713 ELQKLNRLVPAKHKVASGSQIGIDYSDPQQPVLAVRLQELFGTHDTPAILGGKVKLMLHL 772 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LSPA RP+Q+TRDL FW+ Y EV+KE++GRY KH WPDDP T +TKK Sbjct: 773 LSPASRPMQVTRDLKSFWENTYDEVKKELRGRYKKHYWPDDPLEAKATSKTKKN 826 >UniRef50_D1P961 ATP-dependent helicase HrpB n=1 Tax=Prevotella copri DSM 18205 RepID=D1P961_9BACT Length = 859 Score = 855 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 311/855 (36%), Positives = 464/855 (54%), Gaps = 58/855 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPL-------------QLLAHPGINGK 50 LP + + AL + ++++AP GAGKST LPL + H GK Sbjct: 13 LPAYQIADSVNEALMESANLVITAPPGAGKSTLLPLTILRGMSDQALEGFIHDHLKSQGK 72 Query: 51 IILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQR 110 I++LEPRRLAAR +A+R+A++L E G T+GYR+R ++ V +TR+EV+TEG+LTRM+ Sbjct: 73 ILMLEPRRLAARQIAERMAQILGEPVGKTIGYRVRFESKVSDDTRIEVLTEGILTRMLVN 132 Query: 111 DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE 170 D L GV +I DEFHERS+ +DLALAL Q+ +R DLKL+IMSAT+D + Q L + Sbjct: 133 DATLEGVSCLIFDEFHERSINSDLALALARQTQEIIRPDLKLIIMSATIDASIICQAL-Q 191 Query: 171 APVVISEGRSFPVERRYLPLPAHQRFDDA-VAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 AP++ S+G+ FP+E Y + +A + R + G +L FLPG GEI + + Sbjct: 192 APLIESKGKMFPIETVYADHDIDRYQVAQEMAATICQAFRNQEGDILAFLPGQGEIMKCE 251 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 E L S + S L PLYG LS QR AI P+ G RK+VLAT IAETSLTIEG+R+VVD Sbjct: 252 ELLRSVLPSATL-YPLYGNLSPEKQRLAIAPSKPGERKIVLATPIAETSLTIEGVRIVVD 310 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R +D RTGL+ L T R+SQ TQR GRAGR+ G+ L + Q Sbjct: 311 SGLCRKLVYDARTGLSHLETVRISQDMATQRRGRAGRITSGVCYRLWTQTSEHLMPEQRL 370 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER------ 403 PEIL +DLS +++++ +G + P + WL PP NL+ A++LL L AL + Sbjct: 371 PEILDADLSSMVLDIAAFGENKPELLPWLTLPPKGNLVLAQQLLMSLNALTPDHDVHALS 430 Query: 404 --LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD-------- 453 ++ +G +MA L PR+A M++S+ + A A IAA+LEE MG ++ Sbjct: 431 GSITEEGSRMAQLPCHPRIAKMMISSDSPAIQALACDIAALLEEKDPMGENEDSDMTLRL 490 Query: 454 --------LGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRG 505 N+ A + + + R+ D+ + L+A A+ +RIA Sbjct: 491 SILRSARCKKNLGRWNRIAQIAQEYRKMLRIREDNEPIDAEEVGHLIALAYPERIAHATD 550 Query: 506 QDGRYQLANGMGAMLDANDALSRHEWLIAPLL-------LQGSASPDARILLALLVDIDE 558 G ++++NG +D D+++ +EWL L R+ L+ V+ Sbjct: 551 HAGNFKMSNGNTIFIDPCDSMAANEWLAIASLNLDSTSSSSSGQGRKGRVFLSAPVNWKN 610 Query: 559 LVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRD 618 L Q + + WD +K + +IG L + +P+ + + + + R Sbjct: 611 LPA------QTCENISWDSKALAVKMQQETRIGALIIDSKPIQNANRETVSNIICEAARK 664 Query: 619 KGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTG----VHS 674 GLS+ +W +L+ R+ A+W PE + P + E LL + WL ++ S Sbjct: 665 DGLSMFDWNESVHRLQQRVAQVAEWHPELEIPDLSTEHLLTTAQAWLPFYLEEGGKMKTS 724 Query: 675 LRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH-EDNPPALAVRMQE 733 + LK L++ + L +L + +QQ +D P H VP+GS I I Y P L+VR+QE Sbjct: 725 VTELKKLNLCEILWNILPYELQQEIDRLAPTHIRVPSGSNIRIDYRLGAEAPVLSVRLQE 784 Query: 734 MFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWP 793 FG + PT+ GR PL+LELLSP +P+Q+T+DL+ FW+G Y EV+KE+K RYPKH WP Sbjct: 785 CFGMTSTPTVDAGRQPLLLELLSPGFKPVQLTQDLASFWQGTYFEVRKELKRRYPKHFWP 844 Query: 794 DDPANTAPTRRTKKY 808 ++P + R K++ Sbjct: 845 ENPLESQAVRGVKRW 859 >UniRef50_A5VN69 ATP-dependent helicase HrpB n=36 Tax=Proteobacteria RepID=A5VN69_BRUO2 Length = 832 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 376/817 (46%), Positives = 515/817 (63%), Gaps = 13/817 (1%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 + LPV +LP+L AL +L AP GAGK+T +PL +L G I+LLEPRRL Sbjct: 18 LPDLPVTRILPQLDEALAHHASAVLVAPPGAGKTTLVPLHMLGVDWRGEGVIVLLEPRRL 77 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A+LL E+PG+TVGYRMR ++ V TR+ VVTEGV RMI DP+L+GV Sbjct: 78 AARAAARRMAQLLGEEPGETVGYRMRLESKVSAKTRILVVTEGVFARMILDDPDLNGVAA 137 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 V+ DEFHERSL AD LAL LDVQ LRDDLK+L+MSATLD R+ +L +APV+ SEGR Sbjct: 138 VLFDEFHERSLDADFGLALALDVQAALRDDLKILVMSATLDGARVASLLGDAPVIESEGR 197 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 ++PV+ RY A +R +DA+A A + L E+GS+L FLPG GEI+R L R+ ++ Sbjct: 198 AYPVDIRYRDRKADERIEDAMARAIRDALVDETGSILAFLPGQGEIERTARLLEERLPAN 257 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 VLL PLYGA+ + Q AI PAP G RK+VLAT+IAETS+TI+G+R+V+D R+ +++ Sbjct: 258 VLLAPLYGAMEGSAQDAAIRPAPAGSRKIVLATSIAETSITIDGVRVVIDSGLARLPKYE 317 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P TGLTRL T R S+AS QRAGRAGR EPGI++ L + Q A S PEIL++DLSG Sbjct: 318 PATGLTRLETVRTSRASADQRAGRAGRTEPGIAIRLWHQGQTASLPAFSPPEILEADLSG 377 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDP 418 L+++ WG +DPA +++LD+P L AK LL LGAL+ RL+ G+ M +L Sbjct: 378 LVLDAAAWGVTDPATLNFLDKPLKPALAEAKALLHRLGALDEAGRLTPDGEAMRSLALPA 437 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMG-NSDLGVAFSRNQPAWQQRSQQ---LLK 474 RLA M+ A EA AA++A +L E G + DL SR + R+Q+ L K Sbjct: 438 RLAHMVTEAAKRGEAQAAAELAVLLTERGLGGKDIDLETRLSRFRGDRSDRAQRARGLAK 497 Query: 475 RLNV---RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEW 531 RL G S + LL A+ DRIA+ RG G++ LANG G +D +LSR W Sbjct: 498 RLAANLRNQGAPAGSTVGRLLIDAYPDRIAKARGTTGQFLLANGRGGEVDPAVSLSRAPW 557 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIG 591 L+ + + ARIL A E+ ++ + +D + L+A ++IG Sbjct: 558 LVVADM--SGKAGRARILSAAETSEAEIRAALGGRIESGKQIVYDPEKNALRAREAVRIG 615 Query: 592 QLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 + + + LA PS + ++ +R+ GLS+L W+ EAE LR RL + L + WP+ Sbjct: 616 AIALSEKLLAAPSGAGADEGVIAAVREHGLSILPWSKEAEILRRRLGWLYRGLGD-PWPS 674 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 ++D++LL LE WLLP +TG L + + L L+ + +Q+ +D P H+ PT Sbjct: 675 MEDDTLLERLEDWLLPFLTGEAQLDRIPGRVLKNGLMSLVPFDLQRSVDQLAPTHFEAPT 734 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 GS + IRY + P +AVR+QE+FG +P+IA G+VPL+LELLSPA RP+QITRDL F Sbjct: 735 GSHVPIRYDAEE-PVIAVRVQELFGLGAHPSIANGKVPLLLELLSPAHRPIQITRDLPGF 793 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 WKG++ +V+ +M+GRYPKHVWP+DPAN PTRR K Sbjct: 794 WKGSWADVRSDMRGRYPKHVWPEDPANAMPTRRAKPR 830 >UniRef50_B3EB95 ATP-dependent helicase HrpB n=1 Tax=Geobacter lovleyi SZ RepID=B3EB95_GEOLS Length = 798 Score = 850 bits (2198), Expect = 0.0, Method: Composition-based stats. Identities = 346/807 (42%), Positives = 484/807 (59%), Gaps = 22/807 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLAAR 62 LP+ VLP+LL L ++LSAP GAGK+T +PL LL P NG+I++LEPRR+AA Sbjct: 6 LPIDRVLPQLLATLQTHASIVLSAPPGAGKTTRVPLALLKIIPPGNGRILMLEPRRIAAV 65 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 + A+ +A L E+ G TVGY +R + + TR+EVVTEG+LTR +Q DPEL+GV +I Sbjct: 66 SAARYMAASLGEQVGQTVGYTIRFERRLSAQTRIEVVTEGILTRRLQEDPELAGVACIIF 125 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERS+ ADL LAL L+ Q LR DLKLL+MSATLD L ++L +AP++ SEGRSF Sbjct: 126 DEFHERSIHADLGLALCLEAQAALRPDLKLLVMSATLDCAPLAKLLGDAPILSSEGRSFA 185 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V+ RYLP+ Q +A A LR G LL FLPG EI+ VQ +L + ++ Sbjct: 186 VDLRYLPVTNRQPLAGQMAGAIRLALRDNPGDLLAFLPGSSEIRAVQRELDGSVDG--MI 243 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 CPLYG L Q++AI P R+VVLATNIAETSLTI G+R+VVD R +FDP T Sbjct: 244 CPLYGDLPFEQQQQAIQ--PGTRRRVVLATNIAETSLTINGVRIVVDSGLTRRLQFDPAT 301 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL RL+T R S+AS QR GRAGR PG+ L ++ + + PE+L +DL+ L++ Sbjct: 302 GLERLMTVRASRASALQRTGRAGRTGPGVCYRLYGEQSFQAMTPFTPPEMLTADLAPLVL 361 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLA 421 EL WG + P +SWLDQPP +L AA+ LLQ+LGAL+ ++ G++M L PRLA Sbjct: 362 ELAAWGAT-PDGLSWLDQPPAAHLAAAQALLQLLGALDRNGAITGLGRRMVRLPLHPRLA 420 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 +L++ + A ++AA L + Q +R + +L Sbjct: 421 RLLIAGQELQLLPEACRLAAELSNRSSALTAIEQTEQQLLQLMGGRRKRGIL-------- 472 Query: 482 EADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQG 540 + ++ APLL A+ DRIARRR G +GRY LA+G GA + R E L+A + G Sbjct: 473 PSADAVRAPLLILAWPDRIARRRPGDEGRYLLASGRGAACRNS----RAELLVALQVD-G 527 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 + I + + +D+L Q PQL+ + +V WD A + A + QI + + + + Sbjct: 528 GDGAEGVIHQSAAITVDQLRQTVPQLITRQRSVSWDQAAARVAATEQEQIRAVVLSSRQI 587 Query: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 A + +L +R +G+++L W+ A QL+ R++ A + LPE WP + D L Sbjct: 588 AADDAEATA-LLLEQLRCQGVALLGWSETARQLQSRVILAGRLLPEEGWPDLSDTWLSEH 646 Query: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 E WL ++G+ S + L L I L+ L+ W + Q LDS +PA TVP+G RI + Y Sbjct: 647 PEQWLANRLSGLRSQQDLGQLAILPLLQELVGWKLMQLLDSVVPAGLTVPSGRRIGLDYT 706 Query: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 + P L+V++QE+FG A +P I GR +++ LLSPA RP+ +TRDL FW+ Y EV+ Sbjct: 707 DQEGPVLSVKLQELFGLAESPLICHGRRAVLVHLLSPAGRPVAVTRDLKGFWERGYLEVR 766 Query: 781 KEMKGRYPKHVWPDDPANTAPTRRTKK 807 KE++GRYPKH WPDDP N T +TKK Sbjct: 767 KELRGRYPKHPWPDDPWNAVATHKTKK 793 >UniRef50_C1AEB6 ATP-dependent helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEB6_GEMAT Length = 849 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 349/847 (41%), Positives = 482/847 (56%), Gaps = 43/847 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 ++ LP+ + LPELL AL +L AP GAGK+T +PL LL + +I++LEPRRL Sbjct: 5 LTPLPIDSALPELLAALQQRAVAVLEAPPGAGKTTRVPLALLDTSWLGTQRIVMLEPRRL 64 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A +A E G TVGYR+R + V TR+EVVTEGVL R++ D L G G Sbjct: 65 AARAAATYMARQCGESVGGTVGYRVRGETRVSARTRIEVVTEGVLARLLSADATLDGYGA 124 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA----PVVI 175 VI DEFHERSL ADL LAL+L+ QQ LR +L++L+MSATLD D + ++ +A PVV Sbjct: 125 VIFDEFHERSLHADLGLALVLETQQQLRAELRVLVMSATLDGDAVAALIADAGGAAPVVR 184 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 S GR FPV + A +R + + E L+ G +L+FLPG GE +RV E+L Sbjct: 185 SAGRMFPVTTHHRASRADERVEATTSRVIREALQDTEGDVLVFLPGAGEQRRVAERLQGG 244 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + + V + L+G++ L +Q A+ PAP G RKVVL+T+IAETSLT+EG+R+V+D R Sbjct: 245 QDLARVHVHVLHGSMPLAEQDAALAPAPSGWRKVVLSTSIAETSLTVEGVRVVIDVGLSR 304 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 + RFD GLTRL T RVS+AS QR GRAGR PG L + A + PEI+ Sbjct: 305 IPRFDAAAGLTRLHTVRVSRASADQRRGRAGRTAPGSCYRLWDVHEEHVMPAATRPEIVD 364 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAA 413 +DLS L +EL G DP Q+ WLD P AA+ LL LGAL+ R++ G++MA+ Sbjct: 365 ADLSSLALELADAGIGDPLQLRWLDAPKAAPFAAARALLTQLGALDAQGRITPHGKRMAS 424 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG------NSDLGVA---------- 457 + PRLA +L+ A E A IAA+LEE + +DL + Sbjct: 425 MPLAPRLAHLLLMAATRGETMAGAAIAALLEERDVLRADGGRPPADLRLRTELLRRDGDG 484 Query: 458 -----------FSRNQPAWQQRSQQLLKRLNV----RGGEADSSLIAPLLAGAFADRIAR 502 +Q Q LL+R + I LLA AF DR+A+ Sbjct: 485 GTSAGLFGASVDRDATRRARQSMQDLLRRGDFGAVDAKAPWSDDDIGALLALAFPDRVAQ 544 Query: 503 RR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQ 561 RR G + RY + NG GA+L+ D L WL L P+ RI+ A + ++E+ Sbjct: 545 RRSGPEPRYLMRNGSGAILEKRDGLHDAPWLAIAELE--GQPPEYRIVRAAPITLEEITA 602 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 + + WDD +++A R +G L ++ +P + D + A++ ++ G+ Sbjct: 603 DFSEQYVREPRAWWDDTTRSVRATLRTTLGALVLEEKPWRDVAADTVRAALITHLQRIGV 662 Query: 622 SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSL 681 W+ A +LR RL+ + + WP V D++LL +LE WL P + V + L+SL Sbjct: 663 DAWPWSDGATRLRERLMFLHR--QDVSWPDVSDDALLVSLEEWLGPFLENVRNWSQLESL 720 Query: 682 DIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNP 741 D ++AL L+ W + LD P H VP+GSRIA+ YH+ P LAV++QE FG T P Sbjct: 721 DWHEALASLVPWSQRAALDRLAPTHIEVPSGSRIAVDYHDTEAPVLAVKLQECFGWTTTP 780 Query: 742 TIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAP 801 T+ GRVPL + LLSPAQRP+Q+TRDL+ FWKG+Y EV+KE++GRYP+H WPDDP P Sbjct: 781 TLFDGRVPLTMHLLSPAQRPVQVTRDLAGFWKGSYFEVRKELRGRYPRHPWPDDPLTAVP 840 Query: 802 TRRTKKY 808 TRR K Sbjct: 841 TRRAKPR 847 >UniRef50_Q15YM0 ATP-dependent helicase HrpB n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15YM0_PSEA6 Length = 823 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 332/819 (40%), Positives = 477/819 (58%), Gaps = 15/819 (1%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LPV LP L L+ +L AP GAGKST +PL LL H KII+L+PRR+A Sbjct: 3 TQLPVEDTLPALHDGLNNNDV-ILVAPPGAGKSTRVPLALLQHSTFATRKIIMLQPRRIA 61 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 ARN+A LA+ L E+ G TVGYR+R + V TRLE+VTEG+LTRM+Q DPELS V LV Sbjct: 62 ARNIAHYLAKQLGEEVGQTVGYRIRGDSRVSKATRLEIVTEGILTRMLQNDPELSSVSLV 121 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ AD +LAL L+V+ LRDDL+LL+MSATLD L+++LP A + EGR Sbjct: 122 IFDEFHERSMHADFSLALCLEVKDALRDDLRLLVMSATLDVSSLEKLLPNADSIACEGRG 181 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +P+E Y P D A T + G +L+FLPG EI+R ++ LA + Sbjct: 182 YPIETYYRPDATAGSIVDKTARLTLFAAAEHQGDILVFLPGQAEIRRCEKILAQSLSKGC 241 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+ +L Q A+LP PQG RK++LATNIAETSLTIEG+ +VVD ++ A + Sbjct: 242 QIHCLFSQQTLAAQEAALLPDPQGRRKIILATNIAETSLTIEGVSVVVDSGMQKGAIYQL 301 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 GLT+L +Q +S+AS QRAGRAGRL PG+ L +KEQ +R A + EIL SD+S Sbjct: 302 NKGLTQLRSQMISKASAIQRAGRAGRLGPGVCYRLWSKEQHQRLAEHGQAEILTSDISPF 361 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPR 419 L+E WG ++ + +D P + A +L L ++ +++ G+++ +LG+ Sbjct: 362 LLEACVWGAQ-ISEFALIDMPSDAQIAQAHSVLMGLQIIDANFQVTPHGKEVHSLGSQAH 420 Query: 420 LAAMLVSAKND--DEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS-------Q 470 +A ML+ + + A +AA+LE+ +G + + R Q +S + Sbjct: 421 IATMLLKSSELSAGHRSLACALAALLEDKDPLGAQAGSLCYDRLTLLQQHKSHPLWRAIR 480 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 Q K+L LL AF IA + GRY L +G GA L +D+L Sbjct: 481 QWHKKLACDVTHWPLEDTGVLLGFAFPHWIA-KASDSGRYGLVDGTGAQLSEHDSLMGQS 539 Query: 531 WLIAPLLLQG-SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 WL ++ SA +A+I+LA + ++ + L+ EWD ++ + + Sbjct: 540 WLAVGQMMLTNSAQSNAKIMLAEPLSRQQIDKYFNHLIDSETRCEWDSSRSAIVTQSVQR 599 Query: 590 IGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 +G++ +K P AKPS +++ I+++G+ L + A QL RL A ++L + W Sbjct: 600 LGRIVLKKMPSAKPSVEQITALWHKQIKERGVMSLPFNDAALQLIYRLRMAKEYLTDGQW 659 Query: 650 PAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTV 709 P V + LL+ L WL+P++ V S + L LD Y L LD+ QQ L+ P TV Sbjct: 660 PDVSEFGLLSNLHHWLMPYLHDVLSWQQLSKLDFYSLLFNQLDYASQQALNQLFPTKITV 719 Query: 710 PTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLS 769 P+ SRI+++Y + +L+VRMQE++G A P++A+G+V + + LLSPA RPLQ T+DL+ Sbjct: 720 PSTSRISVQYDDVGGASLSVRMQEVYGLADTPSVARGKVKIQMILLSPAGRPLQQTQDLA 779 Query: 770 DFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 FWKG+Y+EVQKEMKGRY KH WPDDPAN T +TKK Sbjct: 780 GFWKGSYKEVQKEMKGRYQKHFWPDDPANAQATSKTKKK 818 >UniRef50_Q0FF79 DEAD/DEAH box helicase n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FF79_9RHOB Length = 826 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 309/829 (37%), Positives = 466/829 (56%), Gaps = 39/829 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ VL EL+ A+ +L AP GAGK+T +P+ LLA KII+L+PRRLA R+ Sbjct: 8 LPIDEVLNELIKAMREKNHAVLQAPPGAGKTTRIPIALLASDLFEKKIIMLQPRRLAVRS 67 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+RLA+ ++ G TVGYRMR ++ V TR+EVVTEGVL +MIQ DPEL+ V +I D Sbjct: 68 AAKRLAQHYGDQLGQTVGYRMRGESKVSNKTRIEVVTEGVLIKMIQNDPELNNVSCIIFD 127 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERSL ADL L L+++ LR+DL +L+MSATLD + +++ +APV+ S G+S+ V Sbjct: 128 EFHERSLSADLGLTFCLEIRSELREDLGILVMSATLDAAPVAKLMGDAPVITSSGKSYDV 187 Query: 184 ERRYLPLP------AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 YL P F A++ + + GS+L FLPG EI++VQ L +++ Sbjct: 188 CPYYLSKPWKFNKTFKNDFIQAISGLIIKAFEENEGSILAFLPGAREIKQVQTFLKAKLA 247 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +D+ + PLYGA+S ++Q+KAIL P RK++LAT+IAETSLTI+ IR+V+D R +R Sbjct: 248 NDLDIYPLYGAMSFDEQQKAIL--PSCRRKLILATSIAETSLTIKDIRIVIDSGLTRRSR 305 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP +G++RLIT+RV++A QR GRAGR G+ L K + EPEIL SDL Sbjct: 306 FDPSSGMSRLITERVTKAEAIQRMGRAGRTNTGVCYKLWTKGEEGGLKPFPEPEILISDL 365 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGN 416 S L MEL WG S+P + +L QP + A+ LL+ LGAL + +++A GQK++ Sbjct: 366 SPLAMELAAWGVSNPKNLPFLTQPKSSDFQTAQELLRDLGALNDNGKITALGQKISLEPT 425 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG---NSDLGVAFSRNQ----------- 462 PRLA +L+S A + A++E +G +D + + Sbjct: 426 HPRLARILISGGQ-----DANLVVALIESKDILGPNSPTDFKLRIDAMKNSISFENNNPY 480 Query: 463 ---PAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQD-GRYQLANGMGA 518 +L KRL+ +G S+ ++A A+ DRI R Q+ G++ L+ G GA Sbjct: 481 AINKKASSNVLKLSKRLHPKGQLELSNA--QMVALAYPDRIGLSRNQNRGQFLLSGGKGA 538 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 + A+D L+ + ++A L +A++ + + + E ++ ++ EW Sbjct: 539 FISASDQLASAKMIVALNLD--GDKREAKLRIGIEILETEFMELFHDQIKFKRICEWSKR 596 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 + + L + + + + + +A+L GI D GL +L WT++ + R Sbjct: 597 ELKVITSEEKTFQSLVLSKKKWTSCNPELIAKALLMGINDIGLDILPWTSKTKNFLARAN 656 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 + P E L WLLPH+ G S L+ L++ ++ L W + Sbjct: 657 KLNQ--TSDFLPNCSLEFLSKKTHEWLLPHLVGFRSKGDLEKLNMIDIIKNLFSWKQIEY 714 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 L+ P PTG+++ I Y E+ P + +R+QE+FG T+PTI + PL++ELLSPA Sbjct: 715 LNKNAPEFILAPTGTKMIINYSEEQ-PKIRIRLQELFGLKTHPTIGENNEPLLVELLSPA 773 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 R +Q T DL FW +Y +V+++M+GRYP+H WP+DP N PTRR KK Sbjct: 774 MRIVQTTSDLPKFWLTSYSDVRRDMRGRYPRHPWPEDPMNAEPTRRIKK 822 >UniRef50_A8H0E4 ATP-dependent helicase HrpB n=20 Tax=Shewanella RepID=A8H0E4_SHEPA Length = 869 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 360/830 (43%), Positives = 501/830 (60%), Gaps = 23/830 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 +SLP+ A+L L A C QV+L APTGAGKST LPL +L P I+GKI++LEPRR+AA Sbjct: 37 TSLPIHALLQPLRDAFSCCQQVILEAPTGAGKSTALPLDMLNWPEISGKILMLEPRRVAA 96 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 RNVAQ +A+ + G VGYR++ V NTRLE+VTEGVLTRMIQ+DPEL+GV +VI Sbjct: 97 RNVAQFIAKQRGCELGTEVGYRVKGDTRVSANTRLEIVTEGVLTRMIQQDPELTGVDMVI 156 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 DE HER L DL LAL L++Q R+DLK+L MSATL L +++P+A + SEGRSF Sbjct: 157 FDEIHERHLTTDLGLALALEIQASFREDLKILAMSATLSGLPLAELMPDAKQLKSEGRSF 216 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQLASRIGSDV 240 PVE Y +P + + +A L++ S GSLL FLPG GEI ++ L+SR+ S+V Sbjct: 217 PVEHAYSGVPNQSHWIEHMAKVIVASLQEHSQGSLLAFLPGQGEINKLHGILSSRLDSNV 276 Query: 241 -LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 ++CPLYG+LS Q AI PA G+RKVVLATN+AE+SLTI+GI V+D +R ARF+ Sbjct: 277 YVICPLYGSLSARAQDLAIAPAANGIRKVVLATNVAESSLTIDGITQVIDSGYKRQARFN 336 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P+TG+TRL +R+SQAS QRAGRAGRL G L ++E+ R EPEI+ SDL Sbjct: 337 PKTGVTRLSLKRISQASAAQRAGRAGRLMAGFCTRLWSQEEHGRLLKADEPEIVHSDLLS 396 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDP 418 ++++ WG ++ L QP N + RLLQ + + R ++ G++ LG +P Sbjct: 397 MVLDAAYWGVKSLNELPMLTQPSAANEDVSWRLLQTMAMVNESRSITQHGRQAHKLGCNP 456 Query: 419 RLAAMLVSA-------KNDDEAATAAKIAAILEEPPRMGNSDLGVAF--SRNQPAWQQRS 469 RLA ML+ A ++ + A +A LE R + Q ++ Sbjct: 457 RLAHMLLMAKQSAEDNQDLNLGLLACILAGTLEARSRSRQGADISRYLLEALQGESSKQI 516 Query: 470 QQLLKRLNVRG----------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAM 519 + +K L + A S IA LLA A+ DRIA+ RG G YQLANG G Sbjct: 517 RNWVKTLGLSALGQLDLAQVARNASSDDIAMLLALAYPDRIAKARGVTG-YQLANGSGVE 575 Query: 520 LDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQ 579 L DALS WL+ L + A++ LA ++ LV + WD+ + Sbjct: 576 LANEDALSGSPWLVVADLQETEGRSQAKVYLAAQLNPQLFDSELASLVLTQEYGGWDEVK 635 Query: 580 GTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLC 639 G A ++ +IG++ + P+ + + QA+L IR KGL+++N+ +QL+ R+ Sbjct: 636 GRFFAEKQQKIGEILLTKTPIHNVDKRLIKQAILEQIRLKGLALMNFNEACQQLQQRVAL 695 Query: 640 AAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRL 699 A ++ PE+ WPA+D ++LL L++WL P++ V SL L+ LD Y L LL W +QQ+L Sbjct: 696 ARQYCPEHGWPALDSDTLLNELDSWLAPYLDEVRSLAQLQQLDCYTLLLNLLPWELQQQL 755 Query: 700 DSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQ 759 + LP + + TGS + I Y L+VR+QE G +P +AQG++ + +ELLSPA Sbjct: 756 EGLLPRKWPMATGSSVKIEYDATGRALLSVRLQEALGMQQSPRLAQGKLVVTMELLSPAH 815 Query: 760 RPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 RPL +T DL FW+G Y V+KEMKGRYP+H+WPDDPANT PT+ TKK + Sbjct: 816 RPLALTADLESFWQGPYEHVKKEMKGRYPRHLWPDDPANTQPTKFTKKKT 865 >UniRef50_A4XYS1 ATP-dependent helicase HrpB n=13 Tax=Gammaproteobacteria RepID=A4XYS1_PSEMY Length = 844 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 384/845 (45%), Positives = 514/845 (60%), Gaps = 39/845 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 M++LP+ A+LP L AL +V+L AP GAGK+T +PL LL P + G+ I++LEPRRL Sbjct: 1 MNALPIDALLPALRDALSARHEVVLEAPPGAGKTTRVPLALLDAPWLAGQTILMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+RLA L E+ G+TVGYR+R + VGPNTR+EVVTEG+L R +Q DP L GVGL Sbjct: 61 AARAAAERLASELGERVGETVGYRIRLDSKVGPNTRIEVVTEGILARRLQDDPALEGVGL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDD------LKLLIMSATLDNDRLQQMLPEAPV 173 V+ DEFHERSL ADLALAL L+ + R + LK+L+MSATL+ +RL +L EAPV Sbjct: 121 VVFDEFHERSLDADLALALTLNGRAMFRGEGSGEAPLKVLLMSATLEGERLAALLGEAPV 180 Query: 174 VISEGRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 + SEGR FPV+ + P + + V + L E GSLL+FLPG EI+RV EQL Sbjct: 181 LRSEGRMFPVDICWGAPFQPGEWIEPRVLQTVQQALADEPGSLLVFLPGQAEIRRVAEQL 240 Query: 233 ASRIGS--DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + D+LLCPL+G L L QR AI PAP G RKVVLATNIAETSLTI+G+R+VVD Sbjct: 241 GEALAGRDDILLCPLHGELDLAAQRAAIEPAPAGTRKVVLATNIAETSLTIDGVRVVVDA 300 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 RV RFDP +G+TRL TQR+S+AS TQRAGRAGRL+PG+ L ++ Q E+ +A S Sbjct: 301 GLARVPRFDPASGMTRLDTQRISRASATQRAGRAGRLQPGVCYRLWSQAQHEQLSAYSGA 360 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQ 409 EIL +DL+GL ++LL+WG + P ++SWLD PP A LL LGAL+ L+A GQ Sbjct: 361 EILAADLAGLALQLLRWGVT-PQELSWLDVPPPAAYAQALDLLGRLGALDERGALNAHGQ 419 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQ------- 462 MA L + PR+A +L+ + A A +AA+L E + + Sbjct: 420 AMAELPSHPRIAHLLLRGQALGLGALACDLAALLSERDILRGGGADLHSRLALLSGESRA 479 Query: 463 --------PAWQQRSQQLLKRLNVR------GGEADSSLIAPLLAGAFADRIA-RRRGQD 507 +Q ++Q L R + LLA A+ DRIA +RR Sbjct: 480 TRSAQGGVQRARQLAKQFQGLLKGRLVIGAVSDPEHPRWLGCLLAFAYPDRIAQQRRAGG 539 Query: 508 GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLV 567 Y+LANG A DAL +HEWL+ L + RI LA +D + + V Sbjct: 540 ADYRLANGRAAQFAEADALMKHEWLVVADLGSRQGQREERIYLAADLDPALFERELAEQV 599 Query: 568 QQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWT 627 + ++WD+ +G L+A R+ ++G+L ++ Q LA ED +A++ +R KGL +L WT Sbjct: 600 TTLEVLDWDEREGVLRAERQRKVGELVLERQALAALDEDTRSRALVGLVRRKGLELLPWT 659 Query: 628 AEAEQLRLRLLCAAKWL----PEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDI 683 E Q + R+ + + +WP + D +LLA+LE WL P + V+ L +LD+ Sbjct: 660 PELRQWQARVALLRELDLQQHGQSEWPDLSDAALLASLEQWLAPFLGKVNRLSHFANLDL 719 Query: 684 YQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTI 743 L+ LL W + QRLD P +VP+GSRIAI Y +NPP LAVR+QE+FG A P I Sbjct: 720 PAILQTLLPWPLPQRLDELAPRTLSVPSGSRIAIDYT-ENPPVLAVRLQELFGLAATPRI 778 Query: 744 AQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTR 803 A GR+ L L LLSPA+RP+Q+T+DL+ FW Y EV+K++KGRYPKH WPDDP PT Sbjct: 779 AGGRLGLKLHLLSPARRPVQVTQDLASFWANTYLEVKKDLKGRYPKHYWPDDPLIAEPTA 838 Query: 804 RTKKY 808 R K Sbjct: 839 RAKPR 843 >UniRef50_C7LWJ1 ATP-dependent helicase HrpB n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWJ1_DESBD Length = 822 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 347/817 (42%), Positives = 481/817 (58%), Gaps = 20/817 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 M LP+ A+LPEL L L+ AP G+GK+T +PL LLA + KI++LEPRRL Sbjct: 11 MPPLPIDAILPELADTLTTGAACLVHAPPGSGKTTRIPLALLASAWLGKNKILMLEPRRL 70 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+ +A LL EK G VGYR R V TR+EVVTEG+LTRM+Q DPELSG Sbjct: 71 AARAAARHMAGLLGEKAGARVGYRTRLDIRVSSATRIEVVTEGILTRMLQHDPELSGYAC 130 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE+HERSLQADL LAL L+V+ LR DL+L++MSATLD + ++ +V G+ Sbjct: 131 VIFDEYHERSLQADLGLALCLEVRAALRPDLRLIVMSATLDAKAVADLIAPCRIVECPGQ 190 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 VE RYL + ++ +A A L E GS+L FLPG EI+R E L G+ Sbjct: 191 PHAVETRYLRVSGR-FLEERMAFAIRHALTTEHGSILAFLPGAREIRRTAELL-GPPGAG 248 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V + PL GAL+ +Q KAI P G RK+VL T IAETSLTIEG+R+V+D R+ RFD Sbjct: 249 VEIHPLLGALTATEQDKAIAPPAPGTRKIVLTTAIAETSLTIEGVRIVIDSGLSRLPRFD 308 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P++ +T L+T+ + A++TQR GRAGR EPGI + + PE+L++DL+ Sbjct: 309 PKSSMTVLVTEPAALATVTQRRGRAGRTEPGICFRIWDQTDEISRKPYPAPEMLEADLAP 368 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDP 418 L+++L WG +DPA +SWL PP + +A RLLQ L AL+ R++ G++MA L P Sbjct: 369 LVLDLALWGTTDPATLSWLTPPPPGHFNSALRLLQSLEALDDQGRITPHGREMALLPLHP 428 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPR-------MGNSDLGVAFSRNQPAWQQRSQQ 471 RL M++SA+ TAA +AAIL EP R + +S + ++ + S + Sbjct: 429 RLGHMVLSARKHGLGPTAAALAAILGEPGRSMRGSSDLRDSLRIHPSTLSRKDTLRASME 488 Query: 472 LLKRLN-VRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHE 530 + RL + + D L A A+ DRIARR+ +DG Y+L +G A+ L+ HE Sbjct: 489 QIARLASINLEQPDPEAAGILTALAYPDRIARRQ-EDGSYRLTSGRKAVWPGPSTLAGHE 547 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 +L L +A A+I + + DEL Q ++ D V +D + + + R++ + Sbjct: 548 FLAIADLDGDAAG--AKIWQSAPLSWDELQTHFRQQFRKEDEVRFDPLKDRVVSLRKIML 605 Query: 591 GQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 L ++ + L + + A+L G K L+ LNW+ E + LR R+ P WP Sbjct: 606 DTLCMREEKLGT-DPETVTSALLRG--QKDLARLNWSEECKNLRDRIRFLRSLDP--AWP 660 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVP 710 + D++LL ++ WL P TG S L +++ QAL+ L+ W + LD + P TVP Sbjct: 661 DMSDQALLESINEWLAPFATGARSQADLGKINLLQALKALVGWDKMRELDRQAPEFMTVP 720 Query: 711 TGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSD 770 TG+ I Y ++ PAL V++QEMFG AT PT+A G LVL LLSPA RPLQ+TRDL Sbjct: 721 TGAHRRIDYSPESGPALPVKLQEMFGCATTPTLADGGYALVLHLLSPAGRPLQVTRDLPS 780 Query: 771 FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FWK AY V+ EM+GRYPKH WP+DPA PT +TKK Sbjct: 781 FWKNAYPLVRAEMRGRYPKHPWPEDPATAMPTAKTKK 817 >UniRef50_C0QI12 HrpB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI12_DESAH Length = 844 Score = 840 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 339/841 (40%), Positives = 483/841 (57%), Gaps = 37/841 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP+ V+PE+ AL +V++ AP GAGK+T +PL LL P + + I++LEPRR+AAR Sbjct: 6 LPIDRVMPEIKAALMTNQRVIIKAPPGAGKTTRVPLALLDEPWLGHRNILVLEPRRIAAR 65 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A R+++LL+E G TVGY + V P TR+EV+TEG+LTR IQ DP L G GLVI Sbjct: 66 AAASRMSDLLHEPLGQTVGYHISMDRKVSPKTRIEVITEGILTRRIQSDPGLLGTGLVIF 125 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER+L +DL LAL LD +DLK+++MSATL+ L +++ A VV S+G+ FP Sbjct: 126 DEFHERNLSSDLGLALCLDAMGAFCEDLKIVVMSATLEAAPLCELMGRAGVVESQGKIFP 185 Query: 183 VERRYLPL----PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-SRIG 237 V+ RYL + + +A L ++ G +L FLPGVGEI+R L S++ Sbjct: 186 VDTRYLEPGPGAKKDEFLEVRMARVILNALARDRGDILAFLPGVGEIRRTAALLNPSKLS 245 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + V + PL+G L+ DQ +AI A G RKVVLAT IAETSLTIEG+ +VVD R R Sbjct: 246 ACVSVLPLHGNLTQKDQDRAIQAARAGQRKVVLATAIAETSLTIEGVHVVVDSGLVREPR 305 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 F PRTG++ L T S+AS+ QR GRAGR PGI L +++ PEI +DL Sbjct: 306 FSPRTGMSALETFDASKASVDQRRGRAGRTGPGICYRLWSRQTQGDRTENVRPEIFNTDL 365 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 +GL +EL WG DP ++ WLDQPP + A+ LL LGAL+ R+ A G+ +A LG Sbjct: 366 AGLALELALWGVRDPGELKWLDQPPKAAMDQARTLLVRLGALDAQGRIKAHGRALAGLGV 425 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM------GNSDLGVAFSRN--------- 461 PRL ML++ K A A +AAI++EP M ++DL + Sbjct: 426 HPRLGHMLLTGKAMGMGALACLVAAIVQEPDFMVRTNNAWDADLRLRVELLVSDPRSIRD 485 Query: 462 -------QPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIAR-RRGQDGRYQLA 513 ++ + +L L V+ D + LLA A+ +R+A R +DGR+ LA Sbjct: 486 RSLKGGTLARVRKIAGKLRHTLGVKDESVDPNRAGNLLALAYPERVAMNRNSRDGRFLLA 545 Query: 514 NGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTV 573 +G G +L D L+ E ++A + + +A+I +A + EL Q Q +Q D V Sbjct: 546 SGRGGILPKADPLAWEEMIVAAHVD--GKNTNAKIFMAAPISRTELEQTFEQNIQVVDRV 603 Query: 574 EWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQL 633 WD + +KA + L + L P+ + + +L GIRD+G+ +L WT + Sbjct: 604 FWDASAKAVKAVKERCYMGLVLSSHALENPNPELILSGLLQGIRDQGVGILAWTPGLRRF 663 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW 693 + R + + L + +P + D+ L +LE W +P M S+ +K +D+ L LL Sbjct: 664 QARAVFLNRILGDEGFPDLSDKVLEESLERWFVPFMGTALSMSRVKRMDLKVPLLSLLTH 723 Query: 694 GMQQRLDSELPAHYTVPTGSRIAIRYHED-----NPPALAVRMQEMFGEATNPTIAQGRV 748 G + L+ P+H VP+GS+I + Y E + P L VR+QEMF T PT+A GRV Sbjct: 724 GEHRLLERHAPSHLLVPSGSKILLDYGEQASGCIDSPVLRVRIQEMFACTTTPTVAMGRV 783 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 P+ + LLSPAQRP+Q+T+DL+ FW Y +V+KE+KGRYPKH WPDDP + TRRT + Sbjct: 784 PVTIHLLSPAQRPVQVTQDLASFWDNTYAQVKKELKGRYPKHFWPDDPRSAPATRRTMRN 843 Query: 809 S 809 S Sbjct: 844 S 844 >UniRef50_Q3BYY2 ATP-dependent helicase HrpB n=20 Tax=Bacteria RepID=Q3BYY2_XANC5 Length = 866 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 338/836 (40%), Positives = 462/836 (55%), Gaps = 37/836 (4%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLA 60 + P++ +LP++ +L P+++L AP GAGK+T +PL LL P + G+ I++LEPRR+A Sbjct: 37 PAFPISPLLPQIRDSLAAHPRLVLEAPPGAGKTTQVPLALLDAPWLAGRRIVMLEPRRVA 96 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+ AQ +A L E G+TVGYR+R +N TR+EVVTEG+LTR+IQ DP L VG + Sbjct: 97 ARSAAQFMARQLGEPVGETVGYRIRFENKTSARTRIEVVTEGILTRLIQDDPMLESVGAL 156 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHER L DL LAL LDVQ +RDDL+++ MSATLD +RL L EAP + S GRS Sbjct: 157 LFDEFHERHLAGDLGLALALDVQAQVRDDLRIVAMSATLDGERLAGFL-EAPRLSSAGRS 215 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 FPVE + P + + A L G +L+FLPG EI RV L + V Sbjct: 216 FPVEIAHFPARRDEALEPQTRRAVEHALSTHPGDVLVFLPGQREIARVHRALQDALDPAV 275 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LS+ Q + + P PQG R+VVLATN+AE+S+T+ G+R+V+D R +DP Sbjct: 276 QVLPLHGELSVEAQSQVLQPDPQGRRRVVLATNVAESSVTLPGVRVVIDSGLAREPHYDP 335 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 +G +RL ++QAS QRAGRAGR+ G + L + Q R Q EI Q +L+GL Sbjct: 336 NSGFSRLDVAAIAQASAEQRAGRAGRVASGWAYRLWPQSQ--RLEPQRRAEITQVELAGL 393 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPR 419 +EL WG S + ++D PP L AA+ LL+ LGAL ++ G++M ALG PR Sbjct: 394 ALELAAWGSS---ALRFVDAPPSGALAAARELLRRLGALTASGGITTLGRRMLALGTHPR 450 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMG-NSDLGVAFSRNQPAWQQRSQ-------- 470 LAAML A + A A +AA+LE + D A R A++Q Sbjct: 451 LAAMLAQAGDAPRVALACDLAALLEARDPLRQGGDGLAARWRALAAFRQGRSAADADRGG 510 Query: 471 ---------QLLKRLNVRGGEA---DSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMG 517 Q +RL ++ + LL+ AF DRIA R RY LANG Sbjct: 511 LAAIDSAAKQWRRRLRCDSAPPSSVEAHALGDLLSHAFPDRIAARHPADPLRYLLANGRS 570 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 A L + L WL+A L + DA +L A VD L + P+ Q D V+WD Sbjct: 571 ARLFDHSDLRGEPWLVASELRYEAK--DALLLRAAPVDEAYLRRSLPERFVQQDVVQWDA 628 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 + L A R+ ++ + +P + A+ + +R GL L WT +Q R R+ Sbjct: 629 DKRALVARRQSSFDRIVLDSRPAGRVDPAHAAAALTDAVRQLGLDALPWTENLQQWRARV 688 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 +W+PE P + D +LL L+TWL P G L L + +AL+ L W +Q Sbjct: 689 QSLQRWMPELALPDLSDATLLETLDTWLRPAFAGKTRLDALDEASLGEALKSALPWERRQ 748 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDN-----PPALAVRMQEMFGEATNPTIAQGRVPLVL 752 +D P +VP+G I Y D+ PP LAV++QE+FG A P IA GR+ L L Sbjct: 749 WIDRHAPTRISVPSGMERPISYALDHAGQPLPPVLAVKLQELFGLAETPRIADGRIRLTL 808 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LLSP RPLQ+T+DL FW Y +V+KEMKGRYP+H WPDDP A T R K Sbjct: 809 HLLSPGGRPLQVTQDLKSFWANTYPDVKKEMKGRYPRHPWPDDPWTAAATHRAKPR 864 >UniRef50_A9DCL0 ATP-dependent helicase HrpB n=1 Tax=Shewanella benthica KT99 RepID=A9DCL0_9GAMM Length = 876 Score = 839 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 351/859 (40%), Positives = 489/859 (56%), Gaps = 53/859 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 ++ LP+ +L L A QV+L APTGAGKST LPL +L + GKI++LEPRR+A Sbjct: 15 LNQLPIHQLLLPLREAFRANNQVILEAPTGAGKSTALPLAMLDWSELKGKILMLEPRRVA 74 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA +A + G VGYR+R ++ G +TRLE+VTEG+L RMIQ+DPELSG+ L+ Sbjct: 75 ARSVAHYIASQRGTQIGAEVGYRVRGESRCGTSTRLEIVTEGILARMIQQDPELSGIALI 134 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DE HER L DL LAL L++Q R+DLK+L MSATL L ++P+A + SEGRS Sbjct: 135 IFDEIHERHLTTDLGLALALEIQGSFREDLKILAMSATLAGLPLSTLMPDACSLQSEGRS 194 Query: 181 FPVERRYLPLPAHQ---------------RFDDAVAVATAEMLRQES------------- 212 FPVE Y L + + + + Sbjct: 195 FPVELGYRSLAESKGRNQGANPYQNSTQIWLEHMGKCIVDLLNGDDKHLASIDADVASDI 254 Query: 213 ---GSLLLFLPGVGEIQRVQEQLASRIGSDV-LLCPLYGALSLNDQRKAILPAPQGMRKV 268 GSLL FLPG GEI R+ + L+ R+ ++ LCPLYG+L Q KAI PA G RK+ Sbjct: 255 DSSGSLLAFLPGQGEIMRLHDYLSKRLDLNLFSLCPLYGSLPAKAQDKAIAPATDGKRKI 314 Query: 269 VLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLE 328 VL+TN+AE+SLTI+GI +VVD +R A F+P+TG+TRL +R+SQAS QRAGRAGRL Sbjct: 315 VLSTNVAESSLTIDGITMVVDSGYKRHASFNPKTGVTRLALKRISQASAAQRAGRAGRLS 374 Query: 329 PGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLA 388 G L L ++E+ R EPEIL SDL + ++ WG + L QP N Sbjct: 375 AGYCLRLWSQEEQGRLIKADEPEILHSDLVPMSLDAAYWGVKALNDLPLLTQPSKANETV 434 Query: 389 AKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAA-------TAAKIA 440 A +LL +L ++ +R L+ G + LG PRLA ML+ AK + A +A Sbjct: 435 AWQLLALLELVDAQRKLTRHGSQAYQLGCHPRLAHMLLKAKTLSQTEGDDHLVGLACLLA 494 Query: 441 AILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLK----------RLNVRGGEADSSLIAP 490 ILE + + + + Q + + ++ L+ S IA Sbjct: 495 GILESRSLGRHG--VDISNYLRESIQGEAGKQVRTWMKKLKVNIDLSRLVSSVGSGDIAL 552 Query: 491 LLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILL 550 LLA AF DRIA+ RG G YQLANG G L +D L+R +WL+ + R+ L Sbjct: 553 LLALAFPDRIAKSRGVSG-YQLANGTGVTLAEHDPLARADWLVVADFQESEGRTSGRVYL 611 Query: 551 ALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQ 610 A +D D +R LV+ D WD+A+G A R +IGQ+ + +P+ +++ Sbjct: 612 AAEIDEDLFNKRLSFLVKSQDYCGWDEAKGRFFAECRQRIGQIVLSKTASNQPAPEQVKA 671 Query: 611 AMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMT 670 A+ IR KGL +L++ + QL+ R+ A++ + WP + ++ LL LE WL P++ Sbjct: 672 AIFEQIRSKGLELLDFNHKTLQLQSRVKLASELDTDTGWPDIGEQHLLDTLEDWLGPYIN 731 Query: 671 GVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVR 730 V SL L++LD Y L L +W +QRLD P H+ + TG+R AI Y + L+VR Sbjct: 732 DVRSLSQLRALDCYTQLLNLFEWDKRQRLDKLFPCHWPMATGTRAAITYDDAGRAKLSVR 791 Query: 731 MQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKH 790 +QE G A +P +A G++ + +ELLSPA+RPL +T DL+ FW+G Y EV+KEMKG+YPKH Sbjct: 792 LQEALGMAQSPILANGKLTVTMELLSPARRPLALTADLASFWQGPYVEVKKEMKGKYPKH 851 Query: 791 VWPDDPANTAPTRRTKKYS 809 +WPDDPANT PTR TKK + Sbjct: 852 LWPDDPANTLPTRFTKKKT 870 >UniRef50_A8IJC9 ATP-dependent helicase n=43 Tax=cellular organisms RepID=A8IJC9_AZOC5 Length = 852 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 356/823 (43%), Positives = 487/823 (59%), Gaps = 19/823 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 + LP+ LP L L +L AP GAGK+T +PL LL P + G KI++LEPRRLA Sbjct: 31 TRLPIDDALPALTATLRDHVAAVLVAPPGAGKTTRVPLALLDEPWVKGGKILVLEPRRLA 90 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A+ L EK G+TVGYR+R ++ V TR+EV+TEGV TRM+ DPELSG+ V Sbjct: 91 ARAAAHRMAQTLKEKVGETVGYRVRLRSEVSRRTRIEVITEGVFTRMVLDDPELSGIAAV 150 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISE 177 + DE+HERSL ADL LAL L+ Q+GLRDDL+LL MSATLD R+ +L + APVV SE Sbjct: 151 LFDEYHERSLDADLGLALALETQRGLRDDLRLLAMSATLDGARVAALLGDGAPAPVVESE 210 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL-ASRI 236 GR++PV+ RYL + V A + L E GS+L FLPG EI+R Q L A Sbjct: 211 GRAYPVDTRYLGRDPRAPIERQVVDAVLKALSAERGSVLAFLPGAAEIRRTQTHLLADVR 270 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 D + L+GAL +Q +A+LPAP G RKVVLAT+IAETSLTIEG+R+VVDC RV Sbjct: 271 DRDTDIVALFGALDAAEQDRAVLPAPPGKRKVVLATSIAETSLTIEGVRVVVDCGLARVP 330 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 RF+P GLTRL T RVS+A+ QR GRAGR EPG+ L + + + A + PEIL +D Sbjct: 331 RFEPDVGLTRLETVRVSRAAADQRRGRAGRTEPGVCYRLWGEGETQSLPAFATPEILAAD 390 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALG 415 LSGL+++L G DP + +LD PP+ + AK LL++L A++ ++ G +MA L Sbjct: 391 LSGLVLDLASAGVRDPRALPFLDPPPLPAVTEAKNLLRVLDAIDADGAVTPLGARMARLP 450 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS-DLGVAFSRNQPAWQQRSQQLLK 474 PRLA M+V + +AA IAA+L E G+S DL + +R++ + Sbjct: 451 LPPRLAHMVVRGSDLGAGESAADIAALLTERGLGGDSPDLAHRLEDFRRERSRRAEDARR 510 Query: 475 RLNVRGGEADSSLIAP---------LLAGAFADRIARRRGQDGRYQLANGMGAMLDANDA 525 A S LLA A+ DR+A+ RG R LANG GA++D + Sbjct: 511 LAGRWAELARESHPPKAGETPSPAALLALAYPDRVAKARGDGTRILLANGRGAVVDPASS 570 Query: 526 LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW 585 L+R +L + + AR+ LA + +E+ + + V +D A +++A Sbjct: 571 LARAPYLAVAEI--SGRADAARVQLAAAISGEEIERLFADAITAGLEVAFDPATASVRAR 628 Query: 586 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP 645 ++G LT+ +P P+ E A+ G+ D G+ L WT Q R R+ + Sbjct: 629 ETRRLGALTLADRPQPVPNTPETAAALAEGLADLGIERLPWTPALTQWRDRVRFLHQAEG 688 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 WP + D L A WL P +TG SL + + D+ AL LL + + RL++E P+ Sbjct: 689 -APWPDLSDAQLAATAAEWLAPFLTGRTSLGQVSAGDLGNALHALLPYELTHRLETEAPS 747 Query: 706 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT 765 H+T PTGS + I Y + P L VR+QE+FG +P IA G+VPL L LLSPA RP+Q+T Sbjct: 748 HFTAPTGSNLPIDYAAEGGPLLPVRVQELFGLTRHPAIAGGKVPLTLALLSPAHRPIQVT 807 Query: 766 RDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 +DL FW+G++R+V+ EM+GRYPKH WP+DPAN PT R K Sbjct: 808 KDLPQFWQGSWRDVRAEMRGRYPKHPWPEDPANAPPTNRAKPR 850 >UniRef50_B9ZJ54 ATP-dependent helicase HrpB n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJ54_9GAMM Length = 837 Score = 834 bits (2156), Expect = 0.0, Method: Composition-based stats. Identities = 334/833 (40%), Positives = 475/833 (57%), Gaps = 34/833 (4%) Query: 5 PVAAVLPELL----TALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 P A L +LL AL+ +L A GAGK+T +PL LA ++I+L+PRRLA Sbjct: 9 PQARALEDLLNPLDAALESRGAAVLVAEPGAGKTTRVPLH-LAACNREDRVIVLQPRRLA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A +A L E G TVGYR+R + V TR+E+VT+G+ R IQ DP L GVG V Sbjct: 68 ARMAATYMAGQLGESAGQTVGYRVRDEQKVSERTRVELVTDGLFLRRIQGDPLLEGVGTV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVI 175 + DEFH R +A+LALA L V++ LR +L++++MSATLD++ + ++L V+ Sbjct: 128 VFDEFHLRRPEAELALAFALQVRRLLRPELRIVVMSATLDDEAVARLLAGPEADAVAVLR 187 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 + GR FPVE RY P D VA A + L E GS+L+FLPG EI+ V +L Sbjct: 188 ARGRQFPVEVRYAPTAKDAPLADGVAQAVRDALAVEPGSILVFLPGEREIREVAARLGEG 247 Query: 235 --RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + PL+G LS +Q +A+ PAP G RKVVLAT+IAETSLTIEG+R+V+D Sbjct: 248 VDTPAGPARIAPLFGRLSAQEQARAVRPAPAGERKVVLATDIAETSLTIEGVRVVIDTGL 307 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R RFD TGL+RL+T+ S+A+ QRAGRAGR E G+++ L ++ + P + Sbjct: 308 SREPRFDAATGLSRLVTRPASKAAAEQRAGRAGRTESGVAIRLWSRADEVARPDYATPGM 367 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKM 411 Q DL L +EL WG A++ WL+ PP L +A+ +L LGA++ R++ GQ + Sbjct: 368 QQVDLLPLALELAGWG-EAVAELDWLEPPPAQGLASAQAVLAELGAVDADGRVTGHGQAL 426 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP---RMGNSDLGVAFSRNQPAWQQR 468 L PRLA ML+ + A A ++A +EEP +LG R + + + Sbjct: 427 LRLPAHPRLAHMLLRGRERGLARLACELAVAVEEPGVAGPEPPLELGARLERARRSGGRA 486 Query: 469 SQQLLKRLNVRGGE------------ADSSLIAPLLAGAFADRIARRRGQD-GRYQLANG 515 L+RL +SS + L A A+ +RIARRRG+ GR+ + NG Sbjct: 487 WPSGLRRLEQALARVGGRPVGTEAVLDESSALGVLAALAWPERIARRRGEAAGRFVMGNG 546 Query: 516 MGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEW 575 GA L + L+ ++L+A + A +ARI A+ +D+ L Q P+L + +W Sbjct: 547 RGAWLPERERLAHTDYLVA--VDCTDADREARIRCAVALDLAALEQEAPELFHRETRCDW 604 Query: 576 DDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRL 635 + L+ R +IG L V+ Q +A +R +GL++L W A QLR Sbjct: 605 VEDGARLENARVRRIGTLVVERQMVALDDPAATIPRWCERLRREGLALLPWDDTATQLRA 664 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGM 695 R+ + +PE +P + D +LL ALE WL P++ G+ R L+ LD+ LR LDW Sbjct: 665 RIQLLHEAMPEGGFPDLRDTALLRALEDWLGPYLAGITRRRDLERLDLAAILRARLDWDH 724 Query: 696 QQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755 QQ+L+ E PA VP+GS I Y +D PP LAV++QE+FG P +A GR+ LVL LL Sbjct: 725 QQQLEREAPARIEVPSGSAHRIDYTQD-PPVLAVKLQELFGLGETPRVAGGRMALVLHLL 783 Query: 756 SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 SPA+RP+Q+T+DL FW+ Y +V++E+KGRYPKH WP+DP N TR TK+ Sbjct: 784 SPARRPVQVTQDLKSFWENGYPDVRRELKGRYPKHPWPEDPWNAPATRHTKRR 836 >UniRef50_A0L6K8 ATP-dependent helicase HrpB n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6K8_MAGSM Length = 829 Score = 831 bits (2147), Expect = 0.0, Method: Composition-based stats. Identities = 359/833 (43%), Positives = 481/833 (57%), Gaps = 33/833 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLA 60 LP+ A L L AL P V+LSAP G+GK+T +PL LL P + G +I++LEPRRLA Sbjct: 5 PDLPIVATLQPLQAALLRHPNVILSAPPGSGKTTVVPLALLDAPWLAGERILMLEPRRLA 64 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+AELL E G+ VGY++R + VGPNTR+EVVTEG+LTR +Q DP L GVG + Sbjct: 65 ARAAASRMAELLQEPVGERVGYQIRFERKVGPNTRVEVVTEGMLTRRLQSDPALQGVGAI 124 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSLQ DL LA L Q LRDDL+LL+MSATL++ RL ++L +AP++ GRS Sbjct: 125 LFDEFHERSLQGDLGLA-LALELQQLRDDLRLLVMSATLESQRLAKLLGDAPIIEGHGRS 183 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PV+ RY P + V + L QE G LL FLPG GEI+RV+ L S + DV Sbjct: 184 YPVQVRYASQPYAHVVEGVVQT-IRQALAQERGDLLAFLPGAGEIRRVEAALRSGLPDDV 242 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 L PLYG L + Q +A+ P +G R+V+LAT+IAETSLTI GIR+VVD + RF Sbjct: 243 TLLPLYGELGMQAQDRAVRPWLEGGRRVILATDIAETSLTIPGIRVVVDGGLCKRPRFHA 302 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 +GLTRL R+S AS QRAGRAGRLEPG+ + + Q + EI ++DL+ L Sbjct: 303 SSGLTRLERLRISDASAQQRAGRAGRLEPGVCYRIWPESQQRMLQPATPAEIREADLAPL 362 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 L+EL WG +DP QMSWLD PP + LL LGA++ ++ G++MA L PR Sbjct: 363 LLELALWGVADPTQMSWLDPPPEGAVAQGWALLVALGAVDEARHITPLGRQMAQLPLHPR 422 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRM----GNSDLGVAFSRNQPAWQQ-------- 467 LA M+ A A A +AA+L E + DL + + +Q Sbjct: 423 LAHMVCMAPEPAAQAMACDVAALLSERDPLKGGARQVDLHLRWQSVAQFRRQGSAGPGVD 482 Query: 468 --------RSQQLLK-RLNVRGGEADSSLIAPLLAGAFADRIA-RRRGQDGRYQLANGMG 517 R L+ L V + + LLA A+ DR+A R GQ GRY LA+G G Sbjct: 483 AASLQRIVRGADQLRHLLGVSRQQVAHGDLGLLLAAAYPDRVAQLRPGQRGRYLLASGRG 542 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 LD D LS L+ L + + R LA+ + + + P V W D Sbjct: 543 VRLDEMDPLSGEPLLVVAALD--AGEAEGRAYLAVSLAQEAFMALQPP--AWQAQVVWSD 598 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELH-QAMLNGIRDKGLSVLNWTAEAEQLRLR 636 Q + A R+ G L ++ QPL + + AML G+R GL+VL WT A Q + R Sbjct: 599 QQQRVVAERQRCFGALVLERQPLHGEAPEAAVLAAMLVGVRRMGLAVLPWTPAAMQYQAR 658 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 + A+ E WP +++ LL LE WL P + GV+ L+ L++ + L+ L W Q Sbjct: 659 VQLMARL--ESGWPLLEEAVLLEQLEQWLAPFLRGVNRRAQLERLNMLEILQSQLTWSQQ 716 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 Q L+ LP HY VP+GSRI + Y P LAVR+QE+FG A +P + QGRVP+ L LL+ Sbjct: 717 QSLEQALPTHYEVPSGSRIKLDYTAGAQPVLAVRIQELFGLAESPCLGQGRVPVTLHLLN 776 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 PAQRP+Q+T DL FW+ + +V+KE++GRYPKH WP++P T R K S Sbjct: 777 PAQRPVQVTSDLRGFWQTTWPQVRKELRGRYPKHHWPENPWQAQATARAKPRS 829 >UniRef50_A0YC48 ATP-dependent helicase HrpB n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YC48_9GAMM Length = 909 Score = 830 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 324/900 (36%), Positives = 477/900 (53%), Gaps = 93/900 (10%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--------GKII 52 + LP++ VL + +L+ Q++L AP GAGK+T +PL +L H +I+ Sbjct: 7 LPELPISDVLTNIDLSLEQHLQLVLEAPPGAGKTTLVPLSILKHQSDKPIKNWLGQQRIL 66 Query: 53 LLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDP 112 +LEPRR+AAR+ A R+A LLNE G TVGYR+R + V +TR+EV+TEG+L RM+ +DP Sbjct: 67 MLEPRRMAARSAATRMASLLNEPVGKTVGYRVRQETKVSRHTRIEVITEGILVRMLIQDP 126 Query: 113 ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD---DLKLLIMSATLDNDRLQQMLP 169 L+ +GL+I DEFHERSL ADL LA L ++ RD L++LIMSATLD + +L Sbjct: 127 SLADIGLLIFDEFHERSLDADLGLAFALQGREIFRDASNPLRILIMSATLDGSAIASLLD 186 Query: 170 EA----------PVVISEGRSFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLF 218 A P++ S G+ +PV Y H+ +A E+ G +L+F Sbjct: 187 SAREDPTDTAATPIISSLGKQYPVAIHYGARKQQHEDIIKRTVLALIEITNTLEGDILVF 246 Query: 219 LPGVGEIQRVQEQLASRIGSDVL----LCPLYGALSLNDQRKAILPAPQ-----GMRKVV 269 LPG EI V+ + ++ + + PLYGAL Q++AI P Q G RK+V Sbjct: 247 LPGYKEINNVRGRFSASLSDSQSSLLHIFPLYGALPFALQQQAIEPLSQADRQRGARKIV 306 Query: 270 LATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEP 329 LAT+IAETSLTIEGI +V+D R F P TG+TRL T +SQ S QR GRAGRLEP Sbjct: 307 LATDIAETSLTIEGITIVIDSGLCRQPIFSPATGMTRLQTNSISQDSSIQRMGRAGRLEP 366 Query: 330 GISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAA 389 G L ++EQ + S PEILQ+DL+ L ++LL WG +P +++WLD PP L A Sbjct: 367 GQCFRLWSEEQQKLLPRHSPPEILQADLASLTLQLLAWGIHEPEELAWLDIPPRGALSQA 426 Query: 390 KRLLQMLG----------------ALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEA 433 LL+ LG AL+ L+ G ++ +L PRLA ML+ ++ ++ Sbjct: 427 LDLLKQLGVIQQHDKQKALTDNEPALDHWVLTPHGTQLVSLPIHPRLAHMLLRSRTINQQ 486 Query: 434 ATAAKIAAILEEPPRMGNSDLGV------------AFSRNQPAWQQRSQQLLKRL----- 476 AA +A +L + + N + +WQQR+Q+ Sbjct: 487 KVAAALAVLLTDRSPLSNRFDTDITTQIAIVQGTSHCQKQFRSWQQRAQRQALLFEKLLS 546 Query: 477 --------------NVRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLD 521 + A+ + LLA A+ DRIARR+ +Y L+NG A++D Sbjct: 547 DLSTDADESCSENDSDANAIAEQNAAGYLLACAYPDRIARRKSAHSNQYLLSNGRTAIID 606 Query: 522 ANDALSRHEWLIAPLLLQGSA-------SPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 D HEWL A ++ + + RI A +DI+ L+ S ++ Sbjct: 607 FADPCCGHEWLSAAEVVGSTQTQKTPQSNNTDRIYSACPLDINLFDGALSYLINASTSIH 666 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 WD+ A + +G + ++ + L + + A++ I+ +GL++L WT Q + Sbjct: 667 WDENTDRFSAEKTHAVGAIVLRKERLENITLESKINAIVTHIQKRGLNILPWTKSTRQWQ 726 Query: 635 LRLLCAAKWLP------EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688 R+ + WP V D+ LLA+LE WL P ++ + LD+ L Sbjct: 727 ARVTLLRRIYSSSNDKARSPWPDVSDQHLLASLEHWLTPFLSKIGKRSDFDKLDLQAILN 786 Query: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748 LL W + Q+L + P TVP+G + I Y + P L V++QEMFG + PTIA+G + Sbjct: 787 TLLPWPLPQQLTALAPLTITVPSGHQAGIDYSQT-SPVLNVKLQEMFGCRSTPTIAEGNI 845 Query: 749 PLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L+++LLSPA+RPLQ+T+DL FWK +Y +V+KEM+GRYPKH WPD+P T+ TK+ Sbjct: 846 KLIVQLLSPARRPLQVTQDLEGFWKTSYHDVKKEMRGRYPKHPWPDNPLEAVATKYTKRN 905 >UniRef50_Q72BU1 ATP-dependent helicase HrpB n=3 Tax=Desulfovibrio vulgaris RepID=Q72BU1_DESVH Length = 847 Score = 829 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 347/832 (41%), Positives = 478/832 (57%), Gaps = 34/832 (4%) Query: 8 AVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAARNVAQ 66 + LP L AL A + + AP GAGK+T +PL LL P + + I++LEPRRLAAR A+ Sbjct: 18 SALPRLTDALLSAGRCVFVAPPGAGKTTVVPLHLLDAPWLRSRRIVMLEPRRLAARAAAR 77 Query: 67 RLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFH 126 +A LL E+ G+TVGYRMR + VGP TR+EVVTEGVL RM+ DP L GLVI DE+H Sbjct: 78 FMARLLGEQVGETVGYRMRLDSRVGPRTRMEVVTEGVLGRMLHDDPTLEEYGLVIFDEYH 137 Query: 127 ERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERR 186 ERSLQADL LAL LDV LRDDL+LL MSATLD L ++ PV+ EGR +PVE R Sbjct: 138 ERSLQADLGLALCLDVADALRDDLRLLAMSATLDAAPLGSLMGGCPVIECEGRQWPVEVR 197 Query: 187 YLPLPA----HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 Y P F+D VA L + G +L+FLPG GEI+R +L V + Sbjct: 198 YAPPVNRAGYPSSFEDNVAACVHRALAETEGDVLVFLPGGGEIRRTARRLEGLDAHGVGV 257 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 LYG L+ Q A+ P G RKVVLAT +AETSLTIEG+R+VVD R +RFDP++ Sbjct: 258 HMLYGDLAPALQDAALAPDVSGARKVVLATALAETSLTIEGVRVVVDGGLARFSRFDPQS 317 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 G++RL+T+R+S A TQR GRAGR PG+ L + + + PE+L +DL+ L++ Sbjct: 318 GMSRLVTERISLAGATQRVGRAGRTGPGVCYRLWHEGETASLRPFARPEVLDADLAPLML 377 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLA 421 +L WG DP+++ WLD PP VN+ A+ LLQ LGA++ R++ G+ M AL PRLA Sbjct: 378 QLSAWGVLDPSKLRWLDAPPEVNVNQARILLQSLGAIDASGRITGHGKSMNALPLHPRLA 437 Query: 422 AMLVSAKNDDEAATAAKIAAILEEP---------PRMGNSDLGVAFSRNQPAWQQRSQQL 472 M++SA A+ A +A +LE+ + + V R++P R Sbjct: 438 HMVLSACRSGSASLACVLACLLEQRGVAERMPGCDIRPSVEDAVRRMRHKPRGASREGWE 497 Query: 473 LK--------------RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGA 518 ++ RL+ +D + LL AF DR+A G +G ++L+ G GA Sbjct: 498 VRLASSVDRIAALAGVRLDAGRALSDVARCGVLLGFAFPDRVAMNTG-EGTFRLSCGRGA 556 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDA 578 + A+DAL+R +L+A L ARI A + +E+ + + V WDD Sbjct: 557 AVPADDALAREPFLVAAELD--GDVTRARIWRAAPLAAEEVAMLAGGAITEQREVGWDDR 614 Query: 579 QGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 QG A + G L ++ + + + L A++ GIR +GL L WT E Q + R+ Sbjct: 615 QGVAVAHVERRFGALVLERRRIDDVDDTLLAHAVMRGIRTRGLRCLPWTQELRQWQARVE 674 Query: 639 CAAKWL-PEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 + P WP V D L A LE WL+P ++G+ +D+ AL+ LL W + Sbjct: 675 LMRRHDTPGGQWPEVADTRLEAELEEWLIPFLSGIRRAEHFARIDLQSALKNLLSWEQAR 734 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 RLD+E P H VP+GSR+ + Y + P LAV++QE+FG A +P G V +V+ LLSP Sbjct: 735 RLDAEAPTHVVVPSGSRVPLDYTAEGGPVLAVKLQELFGMAESPV-VAGGVSVVVHLLSP 793 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 A RPLQ+TRDL+ FW+ Y V+ EM+GRYPKH WP+DP TR T+K + Sbjct: 794 AGRPLQVTRDLAGFWRTGYASVRAEMRGRYPKHPWPEDPLTAMATRHTRKRA 845 >UniRef50_C5S692 ATP-dependent helicase HrpB n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S692_CHRVI Length = 856 Score = 826 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 339/849 (39%), Positives = 489/849 (57%), Gaps = 45/849 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 + LP+ +L +L AL +L APTG+GKST +PL LL P + G +I++L+PRR Sbjct: 4 LDPLPIDVILDDLRAALRQ-GHGVLHAPTGSGKSTGVPLALLDEPWLTGQRILMLQPRRP 62 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A R+A+ L E G+ VGY++R + +GP TR+EVVTEG+LTR +Q DP L GVGL Sbjct: 63 AARMTAARMADRLGEPLGEQVGYQIRFERRIGPRTRIEVVTEGILTRRLQSDPTLDGVGL 122 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHER L +DL LAL LD +GLR DL+LL+MSATL+ + + ++L AP++ +EGR Sbjct: 123 VIFDEFHERGLPSDLGLALTLDSARGLRPDLRLLVMSATLEAEPVAELLGGAPILRAEGR 182 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 SFPVE RY A+ + L E+G +L FLPG EI+R +E L +++GS+ Sbjct: 183 SFPVEIRYAERTPDSDPVRALVAGARQALADETGDILAFLPGAREIERAREALGAQVGSE 242 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V + PL+GALS +Q +A+ P G R+++LAT++AETSLTIEG+R+V+D R RFD Sbjct: 243 VEILPLHGALSSAEQDRALRPDGSGRRRLILATDLAETSLTIEGVRVVLDSGLTRKPRFD 302 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +GLTRL+T+ + +AS QRAGRAGRL PG+ L + Q + PEIL+SDL+ Sbjct: 303 PGSGLTRLVTESIPRASADQRAGRAGRLAPGVCRRLWTRAQEVGRPDRRTPEILESDLAP 362 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDP 418 L +EL WG DPA++SWLD PP A LL+ LGAL+ + ++ G+ +A L P Sbjct: 363 LALELALWGVKDPAELSWLDPPPAPAWNQALELLRTLGALDRRDSITPLGRALAELPVHP 422 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRM-------GNSDLGVAFSRNQPAWQQR--- 468 RL ML+ A + E TAA + A++ E +DLG+ + A ++R Sbjct: 423 RLGVMLLGAAPE-ERQTAADLCALISERDPFLPEPGRARPADLGLRLEALRAARERRGTP 481 Query: 469 --------------SQQLLKRLNVRGGEADSSLI--------------APLLAGAFADRI 500 ++QLL+ A + LLA A+ DR+ Sbjct: 482 AGVERRRLEAIERAARQLLRLAERAAETAPAPASLDQALSPTRLQRVPGALLALAYPDRV 541 Query: 501 ARRRG-QDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDEL 559 A+RR D RY LA G GA L +DAL+ H +L+ + + D RI AL + DEL Sbjct: 542 AQRRAGADERYLLATGTGAELPRDDALAIHPYLVVAAID--ARGRDGRIQSALPISEDEL 599 Query: 560 VQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDK 619 + ++ V WDD + + ++G + ++ +P+A ED+ +L IR+ Sbjct: 600 RTELAECLESRREVFWDDERAAVACRAITRMGSIVLESRPVALGPEDDAGTYLLAHIREH 659 Query: 620 GLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLK 679 L+W+ A QL+ R+ A ++ P DWP + D +L L+ WL P +TG L ++ Sbjct: 660 FGDALDWSDSARQLQARVALARRYDPAGDWPDLSDTALREQLDDWLAPWITGKSRLSDVR 719 Query: 680 SLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAT 739 LD+ L L W +Q LD ++P + P G+ I Y P LA +QE FG + Sbjct: 720 RLDLSAILLDRLSWEQRQWLDQQVPRTFVTPAGNNRPIDYVSGETPILAAPLQEFFGLSD 779 Query: 740 NPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANT 799 P + +GRVP++L LLSPA+RP+Q+T+DL+ FW Y EV+KE++GRYPKH WP+DP Sbjct: 780 TPRLCRGRVPVLLHLLSPARRPMQVTQDLAGFWARGYAEVRKELRGRYPKHHWPEDPTQA 839 Query: 800 APTRRTKKY 808 + Sbjct: 840 QALVGGLRR 848 >UniRef50_B5JVW3 ATP-dependent helicase HrpB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVW3_9GAMM Length = 848 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 357/850 (42%), Positives = 497/850 (58%), Gaps = 51/850 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 +SSLP+ AVL ++ AL + +L AP GAGK+T +PL LL H G KI++LEPRRL Sbjct: 2 LSSLPIHAVLDDVSNALTQHNRAILQAPPGAGKTTAVPLALLDHALFQGQKIVVLEPRRL 61 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+AELL E+ GDTVGYR+R V TR+EVVTEG+LTRM+Q+DPEL G+ Sbjct: 62 AARRAAERMAELLGERVGDTVGYRIRLDTKVSARTRIEVVTEGILTRMLQKDPELLGIAA 121 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP-----EAPVV 174 V+ DEFHERSLQADLALA L QQ LR+DL+LLIMSATLD +QQ+L P++ Sbjct: 122 VLFDEFHERSLQADLALAFCLQSQQLLREDLRLLIMSATLDGAGIQQLLSRIDGSHTPMI 181 Query: 175 ISEGRSFPVERRYLPLPAH-----QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 SEGRSF VE RYL + + D +A T + L +E GS L+F+PG GEIQ++ Sbjct: 182 TSEGRSFAVETRYLTKAPPAAREKRAWLDGLAQLTQKALAEEHGSALVFVPGQGEIQQLA 241 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 ++L +R+ D + PLYGALS +Q +AI PAP+G RKVVLATNIAETSLTIEGIR+VVD Sbjct: 242 QRLQTRVDEDTQIAPLYGALSKAEQDRAIAPAPKGQRKVVLATNIAETSLTIEGIRIVVD 301 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 +R ARF P TG++ L+T+ +++ + QR GRAGRLE G+ + AA S Sbjct: 302 GGLQRRARFAPNTGMSGLVTEAIARDAADQRRGRAGRLEAGVCYRYWCEND--TRAAHSP 359 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 EI SDL+ L+E+ QWG +D +++ WL PP + + LL LGA++ + R++A G Sbjct: 360 AEIEHSDLAPALLEIAQWGITDLSELYWLSPPPEQQVKRGRELLLSLGAIDEQLRITAHG 419 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQR 468 + LG PRL ML+ ++ TA +AA+LEE + + + + + Sbjct: 420 SDLLQLGLHPRLGHMLLHSRYWQAEHTACTLAALLEERDPL-PKEKSQSADLQRRLDAVK 478 Query: 469 SQ-----------------QLLKRLNVRGG----EADSSLIAPLLAGAFADRIAR-RRGQ 506 Q L+RL + G S + LLA A+ DRIA+ R + Sbjct: 479 RSSASPAIKAILQRSQQLAQRLRRLALTGDATDTIDHSEQLGLLLALAYPDRIAQNRHDR 538 Query: 507 DGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQL 566 + R+ L+ G GA ++D L+ ++L+ L DARI A + + + L Sbjct: 539 ERRFLLSGGKGAFFISDDPLAAQDYLVISDLD--GQRKDARIFRAASLSKNAIETHLSTL 596 Query: 567 VQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNW 626 ++ + V WD+AQ + A R ++G L + Q + +P++ +A+L G+R +G L Sbjct: 597 IRHEERVSWDEAQQRVSAERIARLGALVLARQNI-RPNQALTQRALLAGLRQRGE--LPL 653 Query: 627 TAEAEQLRLRLLCAAKWLP--------EYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 A A+ L+ R++ + P + + LL LE WLLP + +SL L Sbjct: 654 NAAAQSLQARVMFLQRQQNQSNHPLGIRAPLPDLSNAHLLDTLEEWLLPFLGHQNSLDKL 713 Query: 679 KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEA 738 LD L G +DW QQ +D P VP+GS I I Y ++PP LAVR+QE+FG Sbjct: 714 AQLDWKSLLLGQIDWEQQQAIDQLAPETLVVPSGSHIRIDYS-EHPPVLAVRLQELFGLN 772 Query: 739 TNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN 798 P IA G PL++ LLSPAQRP+Q+T+DL FWK Y EV+KE++ +Y KH WP+DP Sbjct: 773 NTPAIANGHCPLMIHLLSPAQRPVQVTQDLPSFWKNTYPEVRKELRIKYQKHYWPEDPTQ 832 Query: 799 TAPTRRTKKY 808 TR TKK Sbjct: 833 AQATRHTKKR 842 >UniRef50_Q1ZIP8 Hypothetical ATP-dependent helicase HrpB n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZIP8_9GAMM Length = 826 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 356/825 (43%), Positives = 491/825 (59%), Gaps = 20/825 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MSSLP+ +VL E+ ++L APQV+L AP GAGKST+LP +L + GKII+LEPRRLA Sbjct: 1 MSSLPIDSVLSEIKSSLSAAPQVILQAPPGAGKSTFLPFMMLKNKWFTGKIIMLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 +N+A +A L +EK G+ VGYRMR ++ V NT+LE+VTEGVL++MIQ+D ELSGV L+ Sbjct: 61 TKNIAYYIASLFSEKVGERVGYRMRGESHVSKNTQLEIVTEGVLSKMIQQDAELSGVDLL 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHER+LQ DLALAL LD+Q GLRDDLK+LIMSATLDN LQ+ LP A V S+GR Sbjct: 121 IFDEFHERNLQGDLALALALDLQAGLRDDLKILIMSATLDNSHLQKKLPNALCVSSQGRG 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +P+ + ++ +++ G +L+F+ G+ EI++ QL + V Sbjct: 181 YPITMYHYGFNTSANLMVSLIGLIKRAYKEQKGDILVFVAGIKEIKQCTTQLNVFFENAV 240 Query: 241 L---LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + PLYGALSL Q++A+ A G RK+V+ATNIAETSLTI GI +VVD QER A Sbjct: 241 EIPLIAPLYGALSLQVQQQAMQIAKNGQRKIVIATNIAETSLTIAGITVVVDSGQERSAI 300 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + ++G+T+L TQ +SQAS TQRAGRAGR++ G L + E AQ I +SDL Sbjct: 301 YQAKSGVTKLQTQMISQASATQRAGRAGRVQAGYCYRLWSAEVL--LPAQKTLPIQRSDL 358 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 + LL+E+L WG SD Q+ ++DQP NL A+ LL GAL+ +L+A G+ M +G Sbjct: 359 TSLLLEILYWGVSDAEQLPFIDQPNRSNLAQARTLLTTFGALDASNQLTAYGRAMIDMGT 418 Query: 417 DPRLAAMLVSAKND-------DEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS 469 +PR A +L+ AK + A L E D+ A + +QR Sbjct: 419 EPRYAHLLLQAKRLHEAHYCEGILELGCLLVAQL-ESNEPSVDDISEAILQPSYLVKQRQ 477 Query: 470 QQLLKRLNVRGGEADS--SLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALS 527 + L KRL +R + LLA AF DRIA R G Y L+NG+GA L A+ +L Sbjct: 478 KALFKRLKLRATHTPASLHACGLLLAFAFPDRIALARDNAGCYLLSNGIGAQLSAHSSLI 537 Query: 528 RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRR 587 + L+ L ++ ++RI A +++ +L Q + + W + L A + Sbjct: 538 NQKMLVVADLGLLGSARNSRIFSACSINLCDLENNISAYFSQKNEIYWQLSNKRLIAEKC 597 Query: 588 LQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 IG+L + + L S + A+L GI+ GLS L W+A+ EQL RL A +Y Sbjct: 598 TYIGKLLIHKKALRDLSAQQKSDALLCGIKKAGLSALTWSAQNEQLLCRLQYAHAQYAKY 657 Query: 648 D----WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSEL 703 + E+LL L+ WL P+++ + L LD+ AL L+W + ++ Sbjct: 658 GSHNAFVDFSKETLLNTLDEWLGPYLSALSKPDQLARLDLQGALLARLNWATLAQFKTDF 717 Query: 704 PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQ 763 P H V TGS I+I Y E P L+VRMQE+FG+ +P I GR+ L L LLSPA+R LQ Sbjct: 718 PTHMRVVTGSNISIEYRETQNPLLSVRMQELFGQKDSPCIFSGRITLQLALLSPARRALQ 777 Query: 764 ITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 +T+DL+ FW GAY +V+KEM+GRYPKH WPDDP PT+RTKK Sbjct: 778 LTQDLASFWAGAYVDVKKEMRGRYPKHYWPDDPQLAIPTKRTKKN 822 >UniRef50_B8DNU5 ATP-dependent helicase HrpB n=2 Tax=Proteobacteria RepID=B8DNU5_DESVM Length = 917 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 370/894 (41%), Positives = 492/894 (55%), Gaps = 89/894 (9%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LPV A+LP LL L + +L AP GAGK+T +PL LLA P + G K++LLEPRRL Sbjct: 1 MPRLPVDAILPRLLGVLVDGARAVLQAPPGAGKTTRVPLALLAAPWLAGRKVVLLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A L E GDTVGYRMR VGP TR+EVVTEGVLTRM+Q DPEL+ VG Sbjct: 61 AARAAARRMAATLGEAVGDTVGYRMRLDTRVGPRTRVEVVTEGVLTRMLQADPELADVGC 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL ADL LAL LD Q+GLR DL+L++MSATLD + +L PV+ S GR Sbjct: 121 VIFDEFHERSLHADLGLALCLDCQEGLRPDLRLVVMSATLDCGPVVALLGGCPVIESAGR 180 Query: 180 SFPVERRYLPL---------PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 +FPV+ R+LP +DAVA A L + GSLL+FLPG GEI+R E Sbjct: 181 AFPVDTRHLPPVRNWLPYETTPPGVLEDAVADAVRRALHETPGSLLVFLPGAGEIRRTAE 240 Query: 231 QLASRIGSD---VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLV 287 +LA + V + LYG L+ Q AI PAP G RKVVLAT IAETSLTI+G+R+V Sbjct: 241 RLAGLSATPHGPVAVHALYGDLAPELQDAAIAPAPPGTRKVVLATAIAETSLTIDGVRVV 300 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ 347 +D RV RFDPR+G++RL+T+RVS A QR GRAGR EPG L + + Sbjct: 301 IDAGLARVPRFDPRSGMSRLVTERVSLAGADQRRGRAGRTEPGTCWRLWREGEEAALRPF 360 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSA 406 + PEIL +DL+ LL+EL WG D + + WLD+PP NL A+ LL +LGAL+ R++ Sbjct: 361 ARPEILDADLAPLLLELALWGVPDASALRWLDEPPQANLAQARELLILLGALDGAGRITP 420 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ 466 G+++A L PRLA M+V A+ ATA +AA+LEE + ++ + A Sbjct: 421 HGRRVAVLPLHPRLAHMVVRAEELGLGATACCVAALLEERDPLRDAGADLRLRVALLAGD 480 Query: 467 ----------------QRSQQLLKRL--------------NVRGGEADSSLIAPLLAGAF 496 + + + + RL G D +LA A+ Sbjct: 481 GRRTGNAGGGPMVVRLREAARQVARLAGVDIDAAAGKGKGAHPGTRPDPEATGEVLALAY 540 Query: 497 ADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDI 556 DR+A RGQ G+++LA G GA L D LSR +L + +A RI + Sbjct: 541 PDRVAEGRGQ-GQFRLACGRGAYLPPEDPLSREAFLAVGDMDGDAAR--GRIRRCAPLAR 597 Query: 557 DELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGI 616 + + + + + V WD + A R+ ++G L + P +E+ A++ GI Sbjct: 598 EHIEEAFGASIAEGAFVVWDARTEAVAARRQRRLGALVLDDAPHDAADPEEVTAAVVAGI 657 Query: 617 RDKGLSVLNWTAEAEQLRLRLLCAAKWL-------------------------------- 644 R GL L WT E EQ R R+ Sbjct: 658 RSIGLHCLPWTPELEQWRARVALLRGLDAGGTGRAAEGSQPMPPRPDKSACPVESACRVE 717 Query: 645 ----------PEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 + WP V + +LLA LE WL P+++G+ +D+ AL LL W Sbjct: 718 SAGPDESACQGDSIWPDVSEGALLAGLEHWLAPYLSGITRRAQFARIDLAGALAALLPWE 777 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 + +RLD+E P VP+GS++ + Y + P LAV++QEMFG P +A GRVPLV+ L Sbjct: 778 LTRRLDAEAPERIEVPSGSQVLVDYAAEGGPVLAVKLQEMFGAGETPRVAGGRVPLVVHL 837 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LSPA RPLQ+TRDL+ FW+ Y V+ EM+GRYPKH WP+DP PTR T + Sbjct: 838 LSPAGRPLQVTRDLAGFWRTGYPAVRAEMRGRYPKHPWPEDPLAAPPTRLTTRR 891 >UniRef50_A1SSH4 ATP-dependent helicase HrpB n=2 Tax=Gammaproteobacteria RepID=A1SSH4_PSYIN Length = 835 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 295/838 (35%), Positives = 451/838 (53%), Gaps = 38/838 (4%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAAR 62 LP+ +P++ L P ++L A GAGKST +PL LL P + GK IILLEPRR+A + Sbjct: 2 LPIDDFIPQIQETLSQHPALVLQAEPGAGKSTAVPLSLLGSPFLKGKKIILLEPRRVAVK 61 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 ++A LA+ L EK G VGY++R + + +T LE+VTEGVLTR +Q DPELS VGL+I Sbjct: 62 SLAFYLAKQLGEKVGQRVGYQVRNERKISADTVLEIVTEGVLTRRLQNDPELSDVGLIIF 121 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERS+ ADLAL L L+VQQ RDDL LL+MSAT+D D L L APV+ GR++P Sbjct: 122 DEFHERSIHADLALMLALEVQQAYRDDLTLLVMSATIDTDLLANYLNHAPVIKCPGRTYP 181 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 VE Y+ + + +G +L+FLPG GEI+R + ++GS+ L Sbjct: 182 VEIEYISNTQGYLDQQVMKALNTVLNETSAGDILIFLPGQGEIKRAIQLAKQQLGSNFDL 241 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYG LSL+ Q + ++V+ +TNIAETSLTIEGI V+D E+V FD ++ Sbjct: 242 LPLYGGLSLSQQELVLSKKSGSQQRVIFSTNIAETSLTIEGISTVIDSGLEKVLSFDVKS 301 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL+RL T +S+AS TQRAGRAGRL+ G ++ L ++ + + EI +DLS L++ Sbjct: 302 GLSRLETTSISKASATQRAGRAGRLQRGRAIRLYSEAKHQGLKDFQAEEITNTDLSSLVL 361 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLA 421 +L WG + A+++WL PP + A L +LG L+ + ++ QG + +G DPRLA Sbjct: 362 DLAAWGITSFAKVNWLTPPPEHHFNVACSLNCVLGLLDAQNKITKQGTRALKMGLDPRLA 421 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 +ML+S ++ E A + A+L E + N+ R + R Sbjct: 422 SMLLSCQSTLEKRIACVLGALLSERDILFNAGSSDIIERAM-LFNDYLADRKALKANRNI 480 Query: 482 EAD------------------------------SSLIAPLLAGAFADRIAR-RRGQDGRY 510 + LL A+ DR+A+ R + RY Sbjct: 481 NIGVVEQVVTLAKSFAKSLGLSSLGEPVSLTELNHYAGALLLTAYPDRLAKIRSAKSNRY 540 Query: 511 QLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 LANG G L D++ WL+ + D I V I ++ + ++ Sbjct: 541 LLANGRGVTLREMDSVQGELWLVV--CDCDGKNKDGNIYSCAAVSIPQIKTVLADQLTEN 598 Query: 571 DTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEA 630 D + + ++L L ++ Q L++ ++E Q + + ++ +GL+ LNWT+ Sbjct: 599 SHYALDTKKEKVIGRQKLTYRALVLEEQLLSEIPDNEFAQCVADLLKQEGLAFLNWTSRC 658 Query: 631 EQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGL 690 R+ + + + +P + + +L+ L+ WLLP++ + +++ L+ I L Sbjct: 659 ASWLARVKWLSSVMTD--FPQISETTLIEQLDNWLLPYIGRIKTIKQLRQFQIVDLLMAT 716 Query: 691 LDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPL 750 L + Q L ++ Y P+G I IRY + P +++ +QEMFG+ +P +A +P+ Sbjct: 717 LTFQESQTLAAQAAEFYEAPSGKSIPIRYDQQQGPTVSIILQEMFGQLDSPMLANNTIPI 776 Query: 751 VLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ELLSPA++P+Q T DL++FW +Y +V K+M+GRYPKH WP+ P P R KK Sbjct: 777 RFELLSPARKPIQTTSDLANFWCTSYFDVAKDMRGRYPKHRWPEAPLLELPGRSIKKR 834 >UniRef50_Q31I73 DEAH-box ATP-dependent helicase HrpB n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31I73_THICR Length = 848 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 324/855 (37%), Positives = 465/855 (54%), Gaps = 53/855 (6%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LP+ A+LP+L LD V+L A GAGKST +PL LL + G KII+LEPRRL Sbjct: 1 MKELPIHALLPQLRQGLDTHSNVILQADPGAGKSTAVPLALLDSSWLAGRKIIMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A +++A LA L E G +GY++R + NT LE+VTEGVLTR +Q DPEL+ V L Sbjct: 61 AVKSIAYYLASQLGEPVGQRIGYQIRHERKGSSNTVLEIVTEGVLTRRLQADPELNDVAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP----VVI 175 +I DEFHERSLQADLALAL L+VQ LR+DLKLLIMSAT+D L+ + A V+ Sbjct: 121 IIFDEFHERSLQADLALALCLEVQSALREDLKLLIMSATMDLTPLKTLFNRATTSVSVLQ 180 Query: 176 SEGRSFPVERRYL----PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 S GR FPV YL + A+ + L + +L+FL G +I+R+Q+Q Sbjct: 181 SAGRVFPVSVTYLSSALKSSHPADWMPALQGLIRKALSETEQDILVFLAGQSDIRRLQKQ 240 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L + D ++ L+G LSL +Q A+LP Q RK+VL+TN+AETSLTI+GI V D Sbjct: 241 LEDSLSEDFVIRCLFGGLSLEEQELALLPDAQKRRKIVLSTNLAETSLTIDGIGAVADSG 300 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R A +D +G+T L TQR+SQAS QR GRAGRL G L + Q + EPE Sbjct: 301 FTRKALYDVSSGMTTLTTQRISQASAEQRKGRAGRLFSGKCYRLWTESQQAQLLPFEEPE 360 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQK 410 I QSDLS + +EL QWG S P ++ WL PPV + AAK LL LG L ++ GQK Sbjct: 361 ITQSDLSDVCLELAQWGVSSPTELMWLTPPPVPHYEAAKTLLISLGLLSEAGAVTELGQK 420 Query: 411 MAALGNDPRLAAMLVSAKNDDEAA------TAAKIAAILEEPPRMG---NSDLGVAFSRN 461 G RLA ML+ A+ A +AAIL E + +DL Sbjct: 421 SITFGLPSRLAKMLLVAEQVTTLDKGTAQALACDVAAILAERDVLSFSEGADLVKRLLAL 480 Query: 462 QPAWQQRSQ--------------------QLLKRLNVRGGEAD------SSLIAPLLAGA 495 Q + R Q LKRL L+A A Sbjct: 481 QAYREDRKQARRTYSMQLSAMTQALKNAENWLKRLGGDAKNMALSLTELQRNAGALVAMA 540 Query: 496 FADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLV 554 + +R+A++R GQ RY + NG G L +D+L WL + + ++ LA + Sbjct: 541 YPERLAQKRKGQGVRYVMRNGKGVCLRKDDSLQSSSWLAIASVD--GKRQEGQVYLATSI 598 Query: 555 DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLN 614 +D + + V+ +D+ + + + +G+L + + L+ P ++ + ++ Sbjct: 599 TLDTIKHLFSKQVEHKKAYRFDEEKKEISGREQTCLGKLLLDEKALSAPDQEAIQSCLMA 658 Query: 615 GIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHS 674 I +K L++L+W ++ R+ A++ + P L + + TWLLP++ V S Sbjct: 659 AI-EKDLTLLSWPSKTVDWLNRIRWLAQYC--EEVPDFSQAWLKSNIATWLLPYLNEVSS 715 Query: 675 LRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEM 734 ++ L+ LD++ L+ L + +QQ L+ + P +Y P+ + I Y +N P ++V +QE+ Sbjct: 716 VKALQKLDVFALLQAQLPYDVQQSLEQQAPRYYKTPSQKLVPINY--ENHPTVSVVLQEV 773 Query: 735 FGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPD 794 FGE ++P +A G+V L ELLSPA+RP+Q+T DL++FW+ +Y EV+KEMKGRYPKH WPD Sbjct: 774 FGELSSPKLAWGQVSLTFELLSPARRPIQVTSDLANFWRTSYFEVKKEMKGRYPKHRWPD 833 Query: 795 DPANTAPTRRTKKYS 809 +P K S Sbjct: 834 EPLAEKAGHSVKPRS 848 >UniRef50_B6WQJ6 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQJ6_9DELT Length = 870 Score = 818 bits (2113), Expect = 0.0, Method: Composition-based stats. Identities = 360/846 (42%), Positives = 476/846 (56%), Gaps = 45/846 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 + S PV AV EL AL+ +LSAP GAGKS+ +PL LL P + G KI+LLEPRR+ Sbjct: 25 LPSAPVDAVRAELAGALE-HGNAVLSAPPGAGKSSRVPLWLLEAPWLEGRKILLLEPRRV 83 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR +A+ A LL E G TVGYRMR ++ V TRLE++TEGVLTR + DPELSGVG Sbjct: 84 AARALARYAARLLGEDVGQTVGYRMRQESAVSARTRLEIITEGVLTRRLLADPELSGVGC 143 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DEFHERSL AD+ LAL L+ + LR DL+LL+MSATLD+ ++ +L +APV+ EGR Sbjct: 144 VIFDEFHERSLHADMGLALCLESRAVLRPDLRLLVMSATLDSHKVAALLEDAPVIACEGR 203 Query: 180 SFPVERRYLPLPA------HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 FPVE RYLPLP Q +A A ++RQESGSLL FLPG GEI+RV E L Sbjct: 204 QFPVEERYLPLPPAAAHSGPQALWPHMADVIAALMRQESGSLLAFLPGTGEIRRVAELLE 263 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R+ +D L PLYG LS +Q AI PA G RKVVLAT IAETSLTIEGIRLVVD Sbjct: 264 GRLPADTRLYPLYGMLSPQEQDAAIAPAAAGERKVVLATAIAETSLTIEGIRLVVDAGLS 323 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R +RFDP +GL+RL T RVS A QRAGRAGRLEPGI L + + Q PEIL Sbjct: 324 RESRFDPASGLSRLETVRVSLAGARQRAGRAGRLEPGICCRLWQQAEEHDFRPQQRPEIL 383 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER----LSAQGQ 409 +DL+ ++L WG P + WLD PP +L A+ L LGA+ + G+ Sbjct: 384 DADLAPFCLQLAVWGARRPEDLPWLDLPPKAHLAVAREQLAGLGAITPGTEELLPTPLGR 443 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS 469 ++ L PRLA +L+ A+ A AA +A++L+E + +D +A ++ S Sbjct: 444 QLVKLPLPPRLACLLLRAREHGYGALAACVASLLDERDPLPLADASLALRLDRFCSPSDS 503 Query: 470 QQLLKRLNVRGGEA-------------------------DSSLIAPLLAGAFADRIARRR 504 +RL + ++A A+ +R+A R Sbjct: 504 HGSFRRLRQWAERMARLADIPTGNAPDASGASLLRTARQQLPHLGEVVALAYPERVALRS 563 Query: 505 GQDG---RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQ 561 G++ +Y + NG A+L D+L+R E L + G+ RI LA +D D L + Sbjct: 564 GENNGMAQYLMRNGKAAVLPLTDSLARQEVLAVAAVDAGTRG---RIRLAAALDHDVLEK 620 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 + +S+ + G + A RR ++G L + PL +P D A+ +RD+GL Sbjct: 621 LFRAEITESEDLNVSPE-GQVNARRRRRLGALLLDDAPLPRPDGDACALALCAFVRDQGL 679 Query: 622 SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSL 681 VL W A Q R+ + + WP + ++ L LE WL PH+ LR L Sbjct: 680 RVLPWDEPARQWLARVRLLHQTWGD-PWPDLSEDWLRDELENWLAPHLGNCTDLRQLSPA 738 Query: 682 DIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNP 741 + AL LL + + +RL+ PA + P+G I Y + P +A ++QE FG P Sbjct: 739 RLADALHCLLPYPLPRRLEQLAPAQWQAPSGRSHPIVYDAEGGPFVAAKLQEFFGCEDTP 798 Query: 742 TIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAP 801 IA GRVPL L LLSPA RPLQITRDL FW+ Y +V+ EM+GRYP+H WPDDP Sbjct: 799 HIADGRVPLTLHLLSPAGRPLQITRDLGHFWRNGYPQVRAEMRGRYPRHPWPDDPLTAQA 858 Query: 802 TRRTKK 807 T RT + Sbjct: 859 TARTNR 864 >UniRef50_Q0VPK1 HrpB protein n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VPK1_ALCBS Length = 814 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 321/814 (39%), Positives = 457/814 (56%), Gaps = 18/814 (2%) Query: 5 PVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAARN 63 PV + LL AL + +L AP GAGKST +PL LL NGKI++LEPRR+AAR+ Sbjct: 6 PVDNAIEPLLKALKRYNRTILEAPPGAGKSTRVPLALLDSEWGANGKILMLEPRRVAARS 65 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 VA +A E G +VGYR R V +TRLEVVTEG+LTRM+ +DPEL GV LVI D Sbjct: 66 VATFMASQRGEPVGRSVGYRTRTDTQVSAHTRLEVVTEGILTRMLLKDPELPGVSLVIFD 125 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERSL ADL LAL+L+ + R DL LL+MSATLD L + L APV+ SEG+S+PV Sbjct: 126 EFHERSLNADLGLALMLETCEAFRLDLGLLVMSATLDCGPL-EHLLGAPVIRSEGQSYPV 184 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 Y+P+ A + + D A L +G +L+FLPG G+I+RV QL + G + Sbjct: 185 TVSYVPVSAREDWRDHCAEQVM-ALVDTAGVMLVFLPGQGDIRRVASQLN-QCGCTTPVT 242 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 LYG L L+ Q++ + A R +VL TN+AETSLTIEG+ V+D R +DP Sbjct: 243 SLYGGLPLDKQQQVLALAATEPRLIVLTTNVAETSLTIEGVTHVIDSGFAREPVYDPARH 302 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 +RL+T+R+S+A+ QR+GRAGRL PG S+ L K E A PEI + L L+++ Sbjct: 303 RSRLVTRRISEANARQRSGRAGRLGPGHSVRLWGKS--EVLARYQLPEIQRVGLDRLVLD 360 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLAA 422 L +WG +P QM WLD PP +A + LQ GAL+ L+++G+ +A L DP LA+ Sbjct: 361 LARWGSREPQQMPWLDAPPQAAWNSAVQRLQSAGALDENGSLTSRGEAIAQLPVDPSLAS 420 Query: 423 MLVSAKNDDEAATAAKIAAILEEPPRMGNSD----LGVAFSRNQPAWQQRSQQLLKRLNV 478 +L+ A A +AA++ A+L E + + NQP +RL + Sbjct: 421 LLIVAGEAGLAESAAQLVALLSERDILPGEGVDLRRRLEALENQPQRFGAVLAEARRLKI 480 Query: 479 RGGEADSSL---IAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSRHEWLIA 534 G ++ + LLA + +I+RRR YQ+A+G G L +D+L EWL+ Sbjct: 481 NNGHSEQRWRDAMGTLLASVYPLQISRRRSGGRGRYQMADGPGLFLHDSDSLQGTEWLLV 540 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLT 594 + DARI LA + DE+ Q + V WD + + R +G L Sbjct: 541 --MDTDGQPKDARIRLAWPLTEDEVEAAQEQHGVWREQVGWDAERQRVSGRRERMLGNLV 598 Query: 595 VKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 ++ Q L ++ +L GIR GL+VL W Q + R++ A P+ WP V + Sbjct: 599 LQSQTLTSLDSEQRITGLLAGIRQLGLAVLPWDESWRQWQARVVRLACVQPDGHWPDVSE 658 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSR 714 LL+ LE WL P++ G+ S+ LK L + AL LL Q++L ++P +PTG Sbjct: 659 AGLLSDLEQWLAPYLAGMRSVVDLKKLPLGVALSSLLTLEQQRQLKQDMPESVVIPTGRS 718 Query: 715 IAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKG 774 + + Y + LA ++QE+FG T P +A G + + + LL+PA RP IT +L+ FW Sbjct: 719 VRLDYTGEQ-VVLAAKLQELFGLKTLPALAGGALSITVHLLTPAGRPAAITDNLARFWAE 777 Query: 775 AYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 Y V+K+++GRYPKH WP++P + T TK+ Sbjct: 778 NYAAVRKDLRGRYPKHPWPENPLDAQATGLTKRR 811 >UniRef50_Q6ALG3 Related to ATP-dependent helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6ALG3_DESPS Length = 840 Score = 817 bits (2110), Expect = 0.0, Method: Composition-based stats. Identities = 307/837 (36%), Positives = 444/837 (53%), Gaps = 36/837 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 +S+ P++AVL L +L +L +PTG+GK+T P+ LL ++GK I +LEPRR+ Sbjct: 10 LSNYPISAVLDSLQESLAA-GHTVLKSPTGSGKTTIAPITLLGQDWLHGKKIYMLEPRRV 68 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A R++ LL E+ G TVGY R NT++ +VTEGV + IQ+D EL+ +GL Sbjct: 69 AARAAAYRMSSLLGERIGQTVGYITRYSKEFSANTKIFIVTEGVFLKTIQKDQELTDIGL 128 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE+HERSL L LR+D +LL+MSATLD+++L ++L A +V S G+ Sbjct: 129 VIFDEYHERSL-IADLCLALCLDLATLREDFRLLVMSATLDSEKLAKLLDNARIVESAGK 187 Query: 180 SFPVERRYLPL-PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 SFPV Y P +V A + L G +L FLPG+ +I+ V+ +L S IG+ Sbjct: 188 SFPVSVIYQPPATEFTPLSMSVTSAISYALANYEGDILTFLPGIADIKSVERELES-IGN 246 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 +V + PLYG L + Q K + P R+VVLAT +AETSLT++G+R +VD + + Sbjct: 247 NVKILPLYGDLPIEQQDKILAPKQNRQRRVVLATPVAETSLTVDGVRCIVDSGLHKHPVY 306 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 +P+ GLT L+T R+S+AS QR GRAGR G+ + L ++ A + PEI +DL+ Sbjct: 307 NPKNGLTSLVTSRISRASAEQRRGRAGRQNSGMCIRLWDEKIHHGLLAFTPPEICNADLT 366 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGND 417 L++EL WG +D Q+ WLD P A +LL L AL ++ G+K+ Sbjct: 367 SLVLELAHWGVNDAKQLKWLDPPGKGAWEKAVKLLTQLSALNKKGEITDIGRKLRKFPLH 426 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN---------------- 461 PRL+ ML+ A T +A IL E D G+ Sbjct: 427 PRLSYMLLKATELSLGLTGCYLAGILSERDIFQGHDNGIDIRDRIKALSSLSNRSSSYSG 486 Query: 462 ---------QPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQ-DGRYQ 511 + QQ Q +S LL + DRIA R Q D +Q Sbjct: 487 RANLNTQVCKQILQQVEQWRKTLGIRWAETINSEETGNLLCFCYPDRIAIGRSQQDSTFQ 546 Query: 512 LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 LANG A + A D+L+ + ++A + + +I LA + EL + P L+ SD Sbjct: 547 LANGRQARISAQDSLNNSQIIVAAKVDVRGG--NGKIFLAAPTTLMELEKNHPDLISTSD 604 Query: 572 TVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 + WD + ++A R IG + +P++ +D +L GI++ G L W+ + Sbjct: 605 HIRWDKKELAVQARRETFIGLAKISSKPISLQDKDVALTLLLKGIQETGSEALPWSKSSR 664 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 +L+ RL + +W DE+L+ L TWL P G ++ L+ +D AL L Sbjct: 665 ELQARLQTLFNYDQN-NWQDFSDEALIQDL-TWLEPFCYGFTKVQQLRDIDFQSALLAKL 722 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 + QQ L + P H VP+GS I I YH + P LAVR+QE+FG PTI G +PL Sbjct: 723 SYNKQQLLQTLAPTHTKVPSGSNIKITYHLGDEPRLAVRLQEVFGMCDTPTICGGSLPLT 782 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L LLSPA+R +QIT+DL FW+ Y E++KE+ GRYPKH WPD+P T RTK+ Sbjct: 783 LHLLSPARRSMQITKDLKSFWQRTYPEIKKELAGRYPKHYWPDNPLEAQATSRTKRK 839 >UniRef50_D2UGH8 Probable atp-dependent rna helicase protein n=1 Tax=Xanthomonas albilineans RepID=D2UGH8_XANAL Length = 886 Score = 817 bits (2110), Expect = 0.0, Method: Composition-based stats. Identities = 338/865 (39%), Positives = 464/865 (53%), Gaps = 69/865 (7%) Query: 5 PVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAARN 63 P+ +LP++ +L P+++L AP GAGK+T +P LL P + G+ I++LEPRR+AAR+ Sbjct: 28 PIDPLLPQIRDSLAAHPRLVLEAPPGAGKTTQVPPALLDAPWLQGRRIVMLEPRRVAARS 87 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A +A E PG+TVGYR+R +N V TR+EVVTEG+LTRM+Q DP L GVG ++ D Sbjct: 88 AATFMARQRGEAPGETVGYRIRFENKVSARTRIEVVTEGILTRMLQDDPLLDGVGALLFD 147 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHER L ADL LAL LDVQ +R+DL++++MSATLD +RL Q L +AP + S GRSFPV Sbjct: 148 EFHERHLAADLGLALALDVQAQVREDLRIVVMSATLDGERLAQFL-DAPRLSSAGRSFPV 206 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR-------- 235 E + P + + A L+Q G +L+FLPG EI RV+ L + Sbjct: 207 EIAHFPARREESLEVQTRRAIDHALQQHPGDVLVFLPGQREIARVKAALEAGGIATGSSA 266 Query: 236 ------------------------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLA 271 V + PL+G L + Q K + P G R+VVLA Sbjct: 267 DAIVTHPAAAPSAHDAVHTALHMGATHGVDVLPLHGELPVEQQSKVLQADPHGRRRVVLA 326 Query: 272 TNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGI 331 TN+AE+S+T+ G+R+V+D R +DP +G +RL ++QAS QRAGRAGR+ G Sbjct: 327 TNVAESSVTLPGVRVVIDAGLAREPHYDPNSGFSRLDVTTITQASADQRAGRAGRVASGW 386 Query: 332 SLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKR 391 + L + Q R AQ EILQ +L+ L +EL WG ++D PP L AA+ Sbjct: 387 AYRLWPQSQ--RLEAQRRAEILQVELASLALELAAWGSDGVR---FVDPPPAGALAAARE 441 Query: 392 LLQMLGALEGERL-SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG 450 LLQ LGAL+ ++ +A G++M ALG PRLAAML++A + A A +AA++E + Sbjct: 442 LLQRLGALDANQIITAHGRRMLALGTHPRLAAMLLAATDARAQALACDLAALIEARDPLR 501 Query: 451 ---------------------NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIA 489 D A + ++ L+ V D+ ++ Sbjct: 502 QGGDALAARWRALAAFRRGRVPHDAHRDGLAAIDAAATQWRRRLRGKAVAPESVDAHVLG 561 Query: 490 PLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARI 548 LLA AF DRI R D RY LANG A L + L WL+A L + DA + Sbjct: 562 DLLAHAFPDRIGVRHPHDPLRYLLANGRSARLFEHSELRGEPWLVATELRHEAK--DALL 619 Query: 549 LLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDEL 608 L A VD L + PQ Q D V WD + L A R + ++ + +P + Sbjct: 620 LRAAPVDETSLRAQFPQRFVQQDVVRWDAERRALSALRESRFDRIVLDSRPAGRVDPAHA 679 Query: 609 HQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPH 668 A+ +R+ GL VL W+ + Q R R+ W+PE D P + D +LL +LE WL P Sbjct: 680 ATALTEAVRELGLQVLPWSEDLRQWRARVAGLRAWMPELDLPDLSDTALLDSLEDWLRPA 739 Query: 669 MTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRY-----HEDN 723 G L L + +AL+ L W +Q +D P VP+G I Y + Sbjct: 740 FVGKTRLDALGEDALAEALKTRLPWDRRQAIDRHAPTRIAVPSGMERRIDYALDHAGQPQ 799 Query: 724 PPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEM 783 PP LAV++QE+FG A P IA RVPLVL LLSP RPLQ+T+DL +FW Y EV+KEM Sbjct: 800 PPVLAVKLQELFGLADTPRIADSRVPLVLHLLSPGGRPLQVTQDLRNFWSNTYPEVKKEM 859 Query: 784 KGRYPKHVWPDDPANTAPTRRTKKY 808 KGRYP+H WPDDP + R K Sbjct: 860 KGRYPRHPWPDDPWTATASHRAKPR 884 >UniRef50_D2QWI1 ATP-dependent helicase HrpB n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWI1_9PLAN Length = 863 Score = 809 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 285/859 (33%), Positives = 430/859 (50%), Gaps = 66/859 (7%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 ++ LP+ A LPELLT L + +V+L AP GAGK+T +P +L + +I++L+PRRL Sbjct: 11 LAPLPIDAALPELLTHLKASRRVVLVAPPGAGKTTRVPPAILDSGICGDKQIVVLQPRRL 70 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R++ + G+ +GY++R ++ V TR+EV+TEG+L R + DP L VG Sbjct: 71 AARATAERMSSERGSRLGEEIGYQVRFESRVSKQTRIEVLTEGILQRRLASDPFLERVGC 130 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 ++ DEFHERSL +DL L ++ V+ +RDDL +++MSATLD + + L +APVV+SEGR Sbjct: 131 IVFDEFHERSLASDLLLGMVEQVRASVRDDLMVVVMSATLDASGVSKYLADAPVVVSEGR 190 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-SRIGS 238 FPVE RY Q + V + + Q G LL+FLPGVGEI+ Q L + Sbjct: 191 KFPVEIRYDSDLNRQPLAEQVLSTVSRAIEQRDGDLLVFLPGVGEIRGAQRLLENASFSR 250 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 D + PLYG LSL +Q++A+ Q RK+VLATN+AETS+T++G+ +V+D RV+R+ Sbjct: 251 DFAIQPLYGDLSLEEQQQALRK--QSRRKIVLATNVAETSVTVDGVTIVIDSGLARVSRY 308 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 TGL RL + +S+AS QRAGRAGR PGI L + AA + PE+ + DL+ Sbjct: 309 HESTGLDRLDLEPISRASADQRAGRAGRTAPGICYRLWPEAMHRARAAFNTPEVQRVDLA 368 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDP 418 ++E+L W D A W + P L A LL+ + A + ++ G++M L P Sbjct: 369 PAVLEILAWIEPDLATFPWYEPPASGTLDRAVSLLEQIHAADERSITELGRQMLRLPIHP 428 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN-QPAWQQRSQQLL---- 473 RLA M++ A+ + A AA+L E ++ G + + A + +L Sbjct: 429 RLARMMLYAREHGDLLPVATAAALLSERSPWNHAPGGTRGNFAPRRAREHSESDVLDRVQ 488 Query: 474 ------------------------KRLNVR-------------GGEADSSLIAPLLAGAF 496 L R + L+ + F Sbjct: 489 AIAAFEARGETHFPFGELNPRSAKTLLRTRDQLLRLVDAPRNTSSMPEDELLQRAILAGF 548 Query: 497 ADRIARR----------RGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDA 546 DR+A+R R R + G G LD + + E + L G +A Sbjct: 549 PDRVAKRRETKLAPEYARDDAVRGLMVGGRGVKLDRSSQVLSEELFVCVELDMGQG--EA 606 Query: 547 RILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSED 606 + A V L PQL++ +DD ++ +R L + A P ED Sbjct: 607 IVRQASGVKRAWLD---PQLLETKRVAVFDDELLRVQGRKRTSWNGLLLDESQAALPEED 663 Query: 607 ELHQAMLNGIRDKGLSVLNW-TAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWL 665 E+ + + + V + LR A+ +P+ + P +D + L++ L Sbjct: 664 EVAEILAKEAIARWDRVFPPESEGVLDYVLRTRLLARLMPKLELPPMD----VPYLQSIL 719 Query: 666 LPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPP 725 G S+ L+ ++ L W QQ ++ E P VP+G+ I + Y D PP Sbjct: 720 PAVARGCRSIDDLRRAPWLMVIKNGLSWDQQQAIEREAPERIKVPSGNAIRLEYQADGPP 779 Query: 726 ALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKG 785 LAVR+QE+FG P IA GR P++L LL+P R Q+T DL FW +Y V+K+++ Sbjct: 780 ILAVRIQEIFGLLETPKIAGGRQPILLHLLAPNMRVAQVTDDLHSFWASSYALVRKDLRA 839 Query: 786 RYPKHVWPDDPANTAPTRR 804 RYPKH WP+DP R Sbjct: 840 RYPKHSWPEDPYTAVAQSR 858 >UniRef50_Q3IHM3 ATP-dependent helicase n=3 Tax=Alteromonadales RepID=Q3IHM3_PSEHT Length = 808 Score = 809 bits (2090), Expect = 0.0, Method: Composition-based stats. Identities = 339/815 (41%), Positives = 485/815 (59%), Gaps = 23/815 (2%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LPV + +L+ L P LL AP GAGKSTWLPLQL+ G +I++LEPRRLAARN Sbjct: 2 LPVQNIYQQLVITLQSNPITLLQAPPGAGKSTWLPLQLMRD-GHFKRIVMLEPRRLAARN 60 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 +A LA+ NE G +VG R+R ++ V NTRLE+VTEG+LTRM+Q DPELS V L+I D Sbjct: 61 IASYLAKCQNESVGQSVGLRIRGESKVSVNTRLEIVTEGMLTRMLQNDPELSDVDLLIFD 120 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERS+ AD +LA L+ Q LR+DL +++MSATLD R + PV+ S GRS+P+ Sbjct: 121 EFHERSIAADTSLAFALETQSALREDLTIMLMSATLDTQRYTEFFA-CPVIQSNGRSYPI 179 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 + Y+P+ R+ DA+ + L +++GS L+FLPG EI RVQ+ L + ++ ++ Sbjct: 180 DEVYIPIKDESRWLDAIPTIIKQALSEQTGSALVFLPGQHEILRVQQALTD-LPNNCIVA 238 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 L+G +Q+ AI PAP+GMRKVVL TN+AETSLTIEGIR+V+D + R A F+ +TG Sbjct: 239 TLFGEQDKANQQAAIAPAPEGMRKVVLTTNVAETSLTIEGIRIVIDSGKHRAATFNLKTG 298 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 +T L TQ +S++S QRAGRAGR+EPG+ L +K+ ER + PEIL SD+S L++E Sbjct: 299 VTELTTQSISRSSAVQRAGRAGRIEPGVVYRLGSKQTFERRNSHDNPEILTSDISQLMLE 358 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLAA 422 QWG S +++ LD+P + A LL ML A++ +L+ G KM G D RLA Sbjct: 359 AKQWGAS-IEELTLLDKPTEQQGIQASNLLSMLEAIDSKGKLTPLGSKMLGFGADIRLAH 417 Query: 423 MLVSAKND-----DEAATAAKIAAILEEPPRMGNS---DLGVAFSRNQPAWQQRSQQLLK 474 ML+ A+ A + A+LE N L R P ++Q+ + Sbjct: 418 MLLKAQALEQALPGIYRLAIYLVALLESRVNTANELSLALHSQQQRPHPVFKQQLKYWQS 477 Query: 475 RLNVR--GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWL 532 RL V+ G+ ++ ++ L+A A+ DRIA++RG Y LANG GA L+ D ++L Sbjct: 478 RLKVKESNGDLNTEHLSLLVALAYPDRIAKKRGSG--YLLANGAGAELNR-DYWHNDDYL 534 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQ 592 + RI A + EL P L E+D+ +++G Sbjct: 535 AIATM---GGHKGGRIFSATSLSPFELQAYLPHLFSMQTRCEFDEKTARFIHQDEVKLGA 591 Query: 593 LTVKVQPLA-KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 +T+ QP A K + E +A LN G ++ N +AEQL +R+ A+K + E +P Sbjct: 592 ITLTSQPSAQKLDKSERAKAWLNLFTKHGFALFNEQKDAEQLLIRMSLASKLMSEK-FPK 650 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 ++++ L+ WL + + +L LK + ++AL+ DW Q L S LP TV + Sbjct: 651 INEQQLIQTAPQWLGVFLQDIKTLEQLKKFNYFEALQNCFDWQQQSALKSLLPLRLTVAS 710 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 GS I I Y + P L+VRMQE++G + P +AQG++PL++ELLSP +R LQ+T+DL+ F Sbjct: 711 GSNIRIEYQLEGPAKLSVRMQEVYGMTSTPLLAQGKLPLLMELLSPGKRSLQLTQDLAHF 770 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 W +YR+VQKEMKGRYPKH WPD PA + T + K Sbjct: 771 WNTSYRDVQKEMKGRYPKHFWPDSPATSIATNKVK 805 >UniRef50_B4X2F5 ATP-dependent helicase HrpB n=1 Tax=Alcanivorax sp. DG881 RepID=B4X2F5_9GAMM Length = 818 Score = 802 bits (2073), Expect = 0.0, Method: Composition-based stats. Identities = 325/817 (39%), Positives = 448/817 (54%), Gaps = 18/817 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLA 60 + PV + LL AL + +L AP GAGKST +PL LL GKI++LEPRR+A Sbjct: 3 TDFPVDQAINPLLQALKAHGRAILEAPPGAGKSTRVPLALLDSEWGQRGKILMLEPRRVA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA +A E G +VGYR R V T LEV TEGVLTRM+ DPEL GV LV Sbjct: 63 ARSVATFMASQRGEAVGQSVGYRTRTDTRVSARTHLEVATEGVLTRMLLNDPELPGVSLV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL ADL LAL+L+ + R DL LL+MSATLD L+ +L +APVV SEG+S Sbjct: 123 IFDEFHERSLNADLGLALILEASEAFRPDLGLLVMSATLDCGPLETLL-QAPVVRSEGQS 181 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PV Y P+PA Q + + A ++ +G +L+FLPG +++RV QL R V Sbjct: 182 YPVSVAYAPVPARQDWRNHCAEQVMSLIGD-AGVMLVFLPGQSDMRRVASQLNQRSCP-V 239 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+G LSL+ Q++ I A +VL TN+AETSLTIEG+ VVD R +D Sbjct: 240 PVVTLHGGLSLDKQQRVIALAASEPHLIVLTTNVAETSLTIEGVTHVVDSGFAREPVYDA 299 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 TRL+T+R+S+A+ QR+GRAGRL PG SL L + A PEI + L L Sbjct: 300 ARHRTRLVTRRISEANARQRSGRAGRLGPGHSLRLWGEAD--VLARYQLPEIQRVGLDRL 357 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 +++L +WGC +P QM WLD PP +A LQ GAL+ L+A+G+ +A L DP Sbjct: 358 VLDLARWGCHEPQQMPWLDAPPQAAWDSAVERLQRGGALDDSGSLTARGEAIARLPVDPA 417 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD----LGVAFSRNQPAWQQRSQQLLKR 475 LA +L++AK A AA++ A+L E + + N P KR Sbjct: 418 LALLLIAAKEAGLAEPAARLVAVLSERDILAGEGVDLRRRLEALENHPQRFATVLAEAKR 477 Query: 476 LNV----RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEW 531 LN + L + RR G GRYQ+A+G G L ND+L EW Sbjct: 478 LNAGNDQASQGWRDGMGGLLASVFALQISRRRSGSRGRYQMADGPGLFLHDNDSLQGTEW 537 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIG 591 L+ + DARI LA + +E+ Q + + + WD + + R +G Sbjct: 538 LLV--MDTDGQPRDARIRLAWPLTDEEIESVLEQHGRWREHIGWDTEKQRVTGRRERVLG 595 Query: 592 QLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPA 651 L ++ Q LA ++ +L GIR GL+VL W A Q + R+ + P+ WP Sbjct: 596 NLVLQSQTLASLDSEQQIAGLLAGIRSLGLAVLPWEAHWRQWQARIQRLSAIQPDAGWPD 655 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 V D L+A+LE WL P++ G+ S+ LK L + AL LL Q+ L +P T+PT Sbjct: 656 VSDAGLMASLEEWLAPYLAGMRSVADLKKLPLGAALSSLLSVDQQRHLKQWMPETVTIPT 715 Query: 712 GSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDF 771 G + + Y ++ LA ++QE+FG P +A G + + + LL+PA RP IT +L+ F Sbjct: 716 GRSVRLDYTGEH-VVLAAKLQELFGLQALPPLADGALAITVHLLTPAGRPAAITDNLARF 774 Query: 772 WKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 W Y V+K+++GRYPKH WP+DP PT TKK Sbjct: 775 WAENYAAVRKDLRGRYPKHPWPEDPLQAIPTAVTKKR 811 >UniRef50_Q313C3 ATP-dependent helicase HrpB n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q313C3_DESDG Length = 863 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 350/850 (41%), Positives = 475/850 (55%), Gaps = 50/850 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 LPV+ +L EL L +L AP GAGK+T +PL LL G+I++LEPRRLAAR Sbjct: 11 QLPVSGILQELTDTLARTTCCVLQAPPGAGKTTAVPLALLHAQLPAGRIVMLEPRRLAAR 70 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 + A+R+A++L ++ G+TVG+R+R +C G TR+EVVTEGVLTRM+Q DP L+ V VI Sbjct: 71 SAARRMAQMLGQRTGETVGFRVRHHSCTGSGTRIEVVTEGVLTRMVQSDPALTDVACVIF 130 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERSLQ DL L L L+VQ LR +L+L++MSATLD + ++ PV+ + GRS Sbjct: 131 DEFHERSLQGDLGLTLCLEVQAALRPELRLIVMSATLDGAPVAALMGGCPVLTATGRSHA 190 Query: 183 VERRYLPLP------AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 V R+ P +A L +E GS+L FLPG+ EI V E L + Sbjct: 191 VHTRHFAPPAGRSMLDRHHCIQLIADGIRRALYEEQGSILAFLPGLREITLVAEALQGAV 250 Query: 237 GSD---VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 D V + PL+G L Q AI PAPQG+RKVVL+T++AETSLT+EGIR+VVD Sbjct: 251 SPDGCRVQVLPLHGRLPPQQQDAAICPAPQGVRKVVLSTSVAETSLTLEGIRIVVDSGLT 310 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R A+FDPR+G+T L+T+R S A+ QR GRAGRL+ GI L +K A PEIL Sbjct: 311 RKAQFDPRSGMTGLVTRRASLAAAAQRQGRAGRLQEGICYRLWSKADEPAMPAFDRPEIL 370 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG------ERLSAQ 407 ++DL L +EL +WG D + WL PP ++ A LL LGAL+ ++ Sbjct: 371 EADLVPLALELARWGACDHNSLPWLTPPPHSSMEQAAMLLCQLGALKPAPSTGLRHITQH 430 Query: 408 GQKMAALGNDPRLAAMLVSAKNDD---EAATAAKIAAILEEPPRMGNS--------DLGV 456 G +MAAL PRLA M+++A + A +IAA+ E P + Sbjct: 431 GARMAALPVHPRLAHMVITAADTGQPDILEQACRIAAVFSEAPSALRRQADLCTVIEDAA 490 Query: 457 AFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAG--------------AFADRIAR 502 R+ Q+ +RL G+ A AF DRI + Sbjct: 491 TGRTTDSRTAARTAQMTRRLAAAAGKGPDDRPAVQALRTLPADARCAALCALAFPDRIGK 550 Query: 503 RRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQR 562 GQ GR+ L G A++ A L+ +++A L + DARI A +D + Sbjct: 551 ATGQ-GRFLLTCGRAAIVAATHPLAGSPFIVAAELD--GQNADARIHAAAALDSRTVETL 607 Query: 563 CPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA-KPSEDELHQAMLNGIRDKGL 621 + Q D ++W+ ++A + + +L ++V+PLA KP QAM GIR GL Sbjct: 608 YADNIAQQDNIQWNPQTEAVEATTQRTLWKLPLEVRPLAEKPHTQAAVQAMCEGIRSMGL 667 Query: 622 SVLNWTAEAEQLRLRLLCAAKWLPEYD-----WPAVDDESLLAALETWLLPHMTGVHSLR 676 S L WT E E LR R++ + P WP +E+LLA LETWL P + G+ Sbjct: 668 SALPWTRETETLRQRVMLLRRHEPCGADQINIWPDFSEETLLATLETWLAPFLDGIRRRT 727 Query: 677 GLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFG 736 LK+L++ AL+ +L W + RL+ E P TVP+GS I + Y P LAV++QEMFG Sbjct: 728 QLKNLNLKTALQAMLPWPLPARLEQEAPELLTVPSGSNIRLDYSGP-VPVLAVKLQEMFG 786 Query: 737 EATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 P I GR+P+++ LLSPA RPLQIT+DL FWK YR+V+ EMKGRYPKH WPDDP Sbjct: 787 ATATPAIGNGRIPVLVHLLSPAGRPLQITQDLEGFWKNGYRQVKAEMKGRYPKHPWPDDP 846 Query: 797 ANTAPTRRTK 806 + PTRRT Sbjct: 847 VSARPTRRTN 856 >UniRef50_A8LHX9 ATP-dependent RNA helicase n=30 Tax=Alphaproteobacteria RepID=A8LHX9_DINSH Length = 834 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 340/820 (41%), Positives = 467/820 (56%), Gaps = 25/820 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 +SLP+ LPELL A+ + +L AP GAGK+T +PL LL G G+I++LEPRRLAA Sbjct: 25 ASLPIDGALPELLAAMAGSGMAVLQAPPGAGKTTRVPLALLEA-GAAGRIVMLEPRRLAA 83 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R A+R+A L E G TVGYRMR + VGP TR+EVVTEG+LTR + DPEL G+G VI Sbjct: 84 RAAAERMAASLGEPVGATVGYRMRGASKVGPATRIEVVTEGILTRWLMADPELPGIGTVI 143 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 DEFHERSL ADL LAL L+V+ LR+DL LL+MSATLD + + ++ APVV S GR+F Sbjct: 144 FDEFHERSLNADLGLALCLEVRGALREDLNLLVMSATLDAEPVAALMGGAPVVTSAGRAF 203 Query: 182 PVERRY--LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE RY PLP RF AVA + L + GS L+FLPG GEI++V L R+G D Sbjct: 204 PVEARYLERPLPRGARFAPAVADLVLQALEEAEGSALVFLPGEGEIRQVAALLRDRVGRD 263 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V++ PL+GA+ L++QR AI PAP+G RKVVLAT IAETSLTIE +R+VVD + R ARFD Sbjct: 264 VVVRPLFGAMKLSEQRAAIAPAPEGQRKVVLATAIAETSLTIEDVRIVVDGGRARRARFD 323 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +G++RL+T+ VS+A QR GRAGR+ PG+ L + AA + PEI +DLSG Sbjct: 324 PGSGMSRLVTEPVSRAEAAQRQGRAGRVAPGVCYKLWTRGAEGAFAAYAPPEIAVADLSG 383 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDP 418 L ++L WG P ++ L PP A+ L MLGAL+ R++ G+ +A + P Sbjct: 384 LALDLAVWGTG-PEDLALLTPPPEGAWAEARALCAMLGALDAEGRVTDHGRALARMPTHP 442 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD---------LGVAFSRNQPAWQQRS 469 RLA ML A ++AA+L E + L P + R Sbjct: 443 RLAHMLHVAGRQG-----TELAALLSERDLDRGAGVDLARRVAILRGDAPAPDPGARARV 497 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSR 528 ++ KRL E + + A A+ DRI RR + RY LA G GA+++ + L+ Sbjct: 498 REEAKRLARDLPERAALSLGAQAALAYPDRIGLRRAGEAPRYLLAGGKGAVMEPDAPLAG 557 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 ++A L +ARI A+ V E+ + D W + A ++ Sbjct: 558 MRLIVATDLDGDPR--EARIRQAVAVTEGEVRALFADRILWRDLCAWSKRFRKVVARQQE 615 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD 648 +G L + + E A L G+RD GL+ L E+LR R+ + Sbjct: 616 CLGALVLADRVWRDVPEAARAAAALEGVRDLGLAALGGGPAFERLRARVALCRA--GGLE 673 Query: 649 WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYT 708 P + + +LL A E WLLP + V L+ +D + LR L W Q ++++ P T Sbjct: 674 VPDMSEAALLEAGEAWLLPVLGQVRDADDLRRIDPLEPLRAWLGWDALQAVEAQAPGAIT 733 Query: 709 VPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDL 768 P G ++ + Y + P + R+QE +G +PT+ GRVPL L LLSP Q+P+ +T DL Sbjct: 734 TPLGRKLPVDYSGE-VPEVQARVQEFYGVTRHPTVGPGRVPLRLTLLSPGQKPVAVTSDL 792 Query: 769 SDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 FW G Y +++K+M+GRYP+H WP+DP APT R K Sbjct: 793 PGFWVGGYADLRKDMRGRYPRHPWPEDPTEAAPTTRAKPR 832 >UniRef50_Q1GIW4 ATP-dependent helicase HrpB n=3 Tax=Rhodobacteraceae RepID=Q1GIW4_SILST Length = 841 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 340/858 (39%), Positives = 474/858 (55%), Gaps = 68/858 (7%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 M+ LP+ LP+L++AL + +L AP GAGK+T +PL +L G+I++LEPRRLA Sbjct: 1 MTRLPIDDALPQLISALRARGRAVLEAPPGAGKTTKVPLAILDAKLTEGRILMLEPRRLA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A L E G TVGYR+R + V +TR+EVVTEG+LTRM+Q DP+L GVG V Sbjct: 61 ARTAAERMASTLGEPAGHTVGYRVRGEAKVSRSTRIEVVTEGILTRMLQSDPDLPGVGAV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL DL LA L+V LRDDL LL MSATLD + ++ AP+V SEGRS Sbjct: 121 IFDEFHERSLNGDLGLAFCLEVASALRDDLLLLAMSATLDAAPVAALM-NAPIVTSEGRS 179 Query: 181 FPVERRYLPLPAH---QRFDDAVAVATA-------EMLRQESGSLLLFLPGVGEIQRVQE 230 +PVE R+LP P +R D V + + R SG LL+FLPG GEI+R Sbjct: 180 YPVETRWLPAPLPAKARRIDALVDLVVQAEAETRDKDDRAGSGGLLVFLPGEGEIRRAAS 239 Query: 231 QLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 L R+ + + PL+GAL +QR AI PA +G RKVVLAT+IAETSLTIE IR+VVD Sbjct: 240 ALERRLPAACQVRPLFGALPFAEQRAAIAPATEG-RKVVLATSIAETSLTIEDIRVVVDM 298 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 Q R ARFDP G++RL+T+RV++A TQR GRAGR+ G+ L A+ + AA Sbjct: 299 GQARRARFDPGAGMSRLVTERVTRAEATQRQGRAGRVSAGVCYRLWAQGEEGALAAYPPA 358 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQ 409 EI +DL+ L +EL WG +P + L PP + A+ LLQMLGAL+ + R++ G+ Sbjct: 359 EIEAADLTSLALELALWGA-EPQDLPLLTPPPAGSFAEAQLLLQMLGALDTKMRITEHGR 417 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG--NSDLGVAFSRNQPAWQQ 467 +A L PRLA M A +A +AA+L + + DL + Q + Sbjct: 418 ALARLPLHPRLAHMFTIA-----GPESATLAALLADRDPLRGAPVDLALRLEALQDLRRF 472 Query: 468 RSQQ--------------LLKRLNVRGGEADSSL----------------------IAPL 491 R ++ KRL G ++ A + Sbjct: 473 RDRRPYEVKAPAHQAITAEAKRLKRHRGGHGTAAPNPVDGPAAPLFPAAPSGEPLSPAAM 532 Query: 492 LAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILL 550 A A+ DR+A+RR G D R+ L+ G GA+LD D L+ +L+ +A+I Sbjct: 533 AALAYPDRVAQRRKGDDARFVLSGGKGAVLDNADPLAGASYLVVTDTD--GNPREAKIRQ 590 Query: 551 ALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQ 610 A + + E+ + + W + A ++ + G L + + D + Sbjct: 591 AAQITLAEIRGLFGDQIAWQEVCSWSKRDRRVVARKQERFGALVLDDRIWKDVPPDAVAH 650 Query: 611 AMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMT 670 AML+G+RD GL + + A +L R+ + P +E L+A LE WLLP ++ Sbjct: 651 AMLDGVRDLGLRL---SPAAARLATRVELLRAEGRD--LPDFSEEGLMAKLEDWLLPMIS 705 Query: 671 GVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVR 730 G+ S KS D ALR +L W Q LD ++P + P G +I I Y + P +AVR Sbjct: 706 GMRSDADWKSFDALPALRAVLTWDQTQMLDRDVPGSFVTPLGRKIPIDYDGE-IPGIAVR 764 Query: 731 MQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKH 790 +QE+FG +PT+A V L + LLSPA+RP+QITRDL FW G+Y +V+K+M+ +YPKH Sbjct: 765 LQEVFGVTRHPTVAG--VALKVTLLSPARRPIQITRDLPGFWAGSYADVRKDMRAQYPKH 822 Query: 791 VWPDDPANTAPTRRTKKY 808 WP+DP T R + Sbjct: 823 PWPEDPTKAEATLRARPR 840 >UniRef50_Q1D7W0 ATP-dependent helicase HrpB n=3 Tax=Cystobacterineae RepID=Q1D7W0_MYXXD Length = 854 Score = 793 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 263/848 (31%), Positives = 415/848 (48%), Gaps = 57/848 (6%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAA 61 +LP+ +LP++++ L A ++L AP GAGK+T +P LL GK II+L+PRRL Sbjct: 5 ALPIDPLLPDIVSTLRGARSLVLEAPPGAGKTTRVPRALLEAGLGQGKEIIVLQPRRLPT 64 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R AQR++E L E+ G++VGY++R ++ TRL VTEGVL R + DP+L VG+V+ Sbjct: 65 RLAAQRVSEELGERVGESVGYQVRFEDVRSAKTRLSFVTEGVLGRRLLSDPKLRDVGIVV 124 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDEFHER L AD++LALL +Q+ R DLK+++MSATL+ + ++ L P + SEGR F Sbjct: 125 LDEFHERHLSADISLALLRRLQETARPDLKVVVMSATLEAEPIRAYLGGCPSLRSEGRRF 184 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIGSD- 239 V YLP P + D V + Q G +L+FLPG GEI+R ++ A Sbjct: 185 DVSVEYLPAPDDRHLDQQVLSGIKRLFTQGVDGDVLVFLPGAGEIRRARDACAEFAERHG 244 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + PL+G LS +Q +A+ + RK++L+TN+AETS+TI+G+ +V+D RVA Sbjct: 245 TDVLPLHGDLSPAEQDRAVRRS--SRRKIILSTNVAETSVTIDGVAVVIDSGLARVASHS 302 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P +GL L +VS+AS QR GRAGR G L L + + Q PEI ++DL+ Sbjct: 303 PWSGLPTLKLSKVSRASAIQRGGRAGRTRAGHCLRLYTQHDFDGRPEQDAPEIRRTDLAE 362 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDP 418 ++ L G +D A + + PP +L AA+ LL+ LGA++ ++ G+++ P Sbjct: 363 TVLSLRASGITDLAAFPFFEPPPAASLDAAETLLRRLGAVDPAGTVTEVGERLLRFPVHP 422 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 R A ++V + A AA +AA++ E + + A LL+ Sbjct: 423 RQARIIVEGERRGVGAEAAVLAALMGERDIRREARANLGQGGRPAAVVSGPSDLLELFER 482 Query: 479 RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA------------------------- 513 ++ + + + A + + QL Sbjct: 483 FREAERANFASGRMHSLSLEAGAVQSVDRVQKQLRRAVRGQGPRPQRPEDVEQALMLSVL 542 Query: 514 ---------------------NGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLAL 552 G A L + + ++A +G A + LA Sbjct: 543 AGYPDRVARRRRPRAPELLMFGGGSATLSDVSVVQDADLMVAADA-EGRPGKGAVVRLAS 601 Query: 553 LVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAM 612 V+ + L+ P +++ DT++W+ ++ RL G L ++ P+ + + + Sbjct: 602 AVEPEWLLDLYPDTLEEVDTLQWNAEARRVERLTRLSYGNLVLEETRTPAPASEATARVL 661 Query: 613 LNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGV 672 + G EQ R R+ A PE +P +DD L A L + Sbjct: 662 VEAALAAGPGKFADPEALEQWRTRVALLAGAFPEAKFPTIDDTFLRDA----LASLCSDA 717 Query: 673 HSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQ 732 S + L+ + + AL L Q+ L + P T+P G + + Y PP + R+Q Sbjct: 718 RSFKDLEGVSLLDALYARLTSEQQRLLATHAPERVTLPGGRGVKVHYEPGKPPWVESRLQ 777 Query: 733 EMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 + FG A P + GRVPLVL LL+P R +Q+T DL+ FW+ Y ++KE+ +YP+H W Sbjct: 778 DFFGMAQGPNVCAGRVPLVLHLLAPNMRAVQVTTDLAGFWERHYPAIRKELCRKYPRHSW 837 Query: 793 PDDPANTA 800 P+DP + Sbjct: 838 PEDPQHAQ 845 >UniRef50_Q2RRT0 ATP-dependent helicase HrpB n=19 Tax=Bacteria RepID=Q2RRT0_RHORT Length = 860 Score = 792 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 349/836 (41%), Positives = 471/836 (56%), Gaps = 33/836 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAAR 62 LP+ VLP LL AL + +L AP GAGK+T +P LL + G K+++LEPRRLA R Sbjct: 25 LPIDPVLPALLEALASHGRAVLIAPPGAGKTTRVPPALLGALWLGGQKVVMLEPRRLATR 84 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+R+A E G G+R+R ++ GP TR+EV+TEG+LTR IQ DPEL+GVG VIL Sbjct: 85 AAARRMAFEAGEAVGQRFGFRVRGESRSGPLTRVEVMTEGILTRRIQDDPELAGVGCVIL 144 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER LQ DLA ALL ++Q LR DL+LL+MSATLD + ++ +APV+ S GR+FP Sbjct: 145 DEFHERGLQGDLAFALLREIQGALRPDLRLLVMSATLDGAAIAALMDDAPVIESHGRAFP 204 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V + PA + A+A L E GS+L FLPG EI V LA + +D +L Sbjct: 205 VTITHGERPAARDLGPAMARTILRALEDEPGSVLAFLPGEREIAAVAGALARALPADTVL 264 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYGAL +Q AI P P G RKVVLAT+IAETSLTIEG+R+VVD R RFDP+T Sbjct: 265 RPLYGALPPAEQDAAISPCPPGQRKVVLATDIAETSLTIEGVRIVVDSGLRRSPRFDPQT 324 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL+RL T R+SQA QR GRAGRLEPG+ L L + + AQ PEIL +DL+ L + Sbjct: 325 GLSRLDTVRISQAGAEQRRGRAGRLEPGVCLRLWPEAEHRALPAQETPEILAADLAPLAL 384 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPRLA 421 EL +WG D A + W PP L A+ LL LGALE LSA G MAAL PRLA Sbjct: 385 ELARWGARDAAALCWPTPPPPGPLAQARDLLTSLGALEPAGGLSAHGAAMAALPLHPRLA 444 Query: 422 AMLVSAKNDDE--AATAAKIAAILEEPPRMGNSDLGVAFSR------------------- 460 M+++AK D A A +AA+L E + Sbjct: 445 HMVLAAKADGADDGALACLLAALLAERDILRPGPGAARDRDLTTRLEILIGQGRRAPAGQ 504 Query: 461 -NQPAWQQRSQQLLKRLN-----VRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLA 513 + + RL + + +LA A+ DRIA+ R GQ GR+ L+ Sbjct: 505 ILRQPTLGAVRDEAARLRQLAGIAASASPEPARCGRVLARAYPDRIAQARPGQPGRFLLS 564 Query: 514 NGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTV 573 +G GA++D D L+ +L + A +AR+ LA +D +L + + ++ +TV Sbjct: 565 SGRGALIDVGDPLAAAAFLAVAEVD--GAGSEARVFLAAPLDRADLEELFDEALRPCETV 622 Query: 574 EWDDAQGTLKAWRRLQIGQLTVKVQPLA-KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632 WD + A ++G L + + L + A+ GIR GL L WT E ++ Sbjct: 623 TWDPRAEAVVARVERRLGALVFESRDLPDRADPARTTPAVCAGIRRLGLGCLPWTRETDR 682 Query: 633 LRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 LR R+ + DWP + D++LLA+L WL P + G+ +D+ AL+ L+ Sbjct: 683 LRARVAFLHRVHSADDWPDLSDDALLASLADWLGPWLDGITRRSAFARIDLMAALKALIG 742 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 W LD PA VP+G ++A+ Y + P LA R+Q++FG P + G P+++ Sbjct: 743 WRRLADLDRLAPAQMDVPSGVKVALDYEVPDGPVLAARVQQLFGLTRTPAVLDGGHPVLV 802 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LLSPA RPLQ+TRDL+ FWKG+Y EV+K+M+GRYPKH WP+DP T R K Sbjct: 803 HLLSPAGRPLQVTRDLAGFWKGSYAEVRKDMRGRYPKHPWPEDPTGAEATNRVKPR 858 >UniRef50_B8J0D1 ATP-dependent helicase HrpB n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J0D1_DESDA Length = 900 Score = 784 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 338/881 (38%), Positives = 462/881 (52%), Gaps = 85/881 (9%) Query: 7 AAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAARNVA 65 LL AL+ ++LSA GAGKS+ +PL LLA P + G+ ++LLEPRR+AAR +A Sbjct: 19 DQERQHLLAALEQNCGLVLSASPGAGKSSRVPLWLLAAPWLRGRNVLLLEPRRVAARALA 78 Query: 66 QRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEF 125 + +A LL E G TVG RMR +N GP+TR+EVVTEGVLTRM+Q P+L VI DEF Sbjct: 79 RYMAALLGENVGHTVGLRMRDENRTGPHTRIEVVTEGVLTRMLQEQPDLPATACVIFDEF 138 Query: 126 HERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVER 185 HERSL AD+ LAL L+ + LR DL+L++MSATLD + ++ + P + S GR PV+ Sbjct: 139 HERSLAADMGLALCLESRAVLRPDLRLVVMSATLDVQAVSDLMGQCPAIHSPGRCHPVDL 198 Query: 186 RYLPLPAHQ-----------RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 YLP +A +L++E GSLL FLPG GEI++ L Sbjct: 199 HYLPHTLQTGGKISSAGGSFALWQHMASVILTLLQKEPGSLLAFLPGAGEIRQTASFLEE 258 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 R+ DVLL L+G LS Q AI PAP G RKVVLAT+IAETSLTIEG+R+VVD R Sbjct: 259 RLPPDVLLHSLHGNLSAAQQDAAIAPAPPGKRKVVLATSIAETSLTIEGVRMVVDAGLAR 318 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++RF P +GL+RL+T+RVS A QR GRAGR EPGI L AKE+ + PEIL Sbjct: 319 LSRFAPASGLSRLVTERVSLAGADQRTGRAGRTEPGICCRLWAKEEEKGMRPHIRPEILD 378 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 +DL+GLL++L WG SDP+ M WLD PP+ +L A++ L++LGA + + G +MAA Sbjct: 379 ADLTGLLLQLAAWGASDPSAMPWLDAPPLPHLAVARQCLELLGAFTPAGKPTDLGLRMAA 438 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 L +PR A ML+ A +AA+LEE + N+ + W+Q L Sbjct: 439 LPLEPRSARMLLWGAQHGHGPLACCLAALLEERDPLANTQRPEKRGQW--GWRQTDSDLA 496 Query: 474 KRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDAN---------- 523 RL+ A A A + RR+ LA M D + Sbjct: 497 LRLDWL--CRSPHQGATAPAREHARQRVRRQSLRLTRLLAQIMKTDHDPSPIPDHKQNAA 554 Query: 524 -----------------DALSRHEWLI------------------------APLLLQGSA 542 A++ E++ A LLQ + Sbjct: 555 SGLFADALADVSALGLLTAVAWPEYVAMLQPGGQKGDIGAPMRTYLMRSGRAARLLQTDS 614 Query: 543 SPDARILLALLVD---------------IDELVQRCPQLVQQSDTVEWDDAQGTLKAWRR 587 + L VD ++ + + G + A R+ Sbjct: 615 LARSEFLAVAQVDGTLPHGRIRLAAALSGTDMEELFSSQ-AVQTDITCVTEAGQVTARRQ 673 Query: 588 LQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 ++G + ++ PL +P + + A+ +R++GL+ L W ++ Q R R+ + P+ Sbjct: 674 RRLGAIVLEDIPLPRPEPEHIVAALCAHVRERGLTCLPWNVQSLQWRARVALLHELEPD- 732 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHY 707 WPAV D +LL +LE WL P MT SL L + AL LL + LD P H+ Sbjct: 733 AWPAVSDAALLGSLEAWLGPFMTNCTSLAALSAETFSAALHSLLLGNGGRLLDRLAPTHW 792 Query: 708 TVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRD 767 P+G++ I Y E+ PAL V++QEMFG P IA GRVPL+L L SPA RPLQ+TRD Sbjct: 793 QAPSGAQRPITYGEEGGPALDVKLQEMFGCVDTPCIAGGRVPLLLRLNSPAGRPLQVTRD 852 Query: 768 LSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L+ FW+ Y V+ EM+GRYP+H WP+DP T TKK Sbjct: 853 LAHFWRNGYPAVRGEMRGRYPRHPWPEDPLTATATALTKKK 893 >UniRef50_A3Y8Y8 ATP-dependent helicase HrpB n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8Y8_9GAMM Length = 872 Score = 784 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 311/862 (36%), Positives = 452/862 (52%), Gaps = 61/862 (7%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAA 61 LP+ ++ L L+ + +L A GAGK+T +PL LL P + KI++LEPRRLAA Sbjct: 9 DLPITQIIEPLRQQLNHHDEAILEAEPGAGKTTCVPLALLDQPWLKQQKILVLEPRRLAA 68 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++ A R+AELL E G TVGYR+R + V TR+EV+TEG+L R++Q DP L GVGL+I Sbjct: 69 KHAAARMAELLKEPLGKTVGYRIRHEQKVSQETRIEVITEGILVRLLQDDPSLEGVGLII 128 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 DEFHER+L +DLALAL L+ + LR++ LKLL+MSATL+ L++ L + GR Sbjct: 129 FDEFHERNLDSDLALALCLESRDFLREEEPLKLLVMSATLEQASLEKALG-CRRLFCPGR 187 Query: 180 SFPVERRYLPLP-AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 SFPV Y L ++ L + G +L+FLPG EI R++ L ++ Sbjct: 188 SFPVTVNYQNLSLKQDEILPHLSRTVCHALGHDEGDILVFLPGQSEINRLESSLQDQLAD 247 Query: 239 DVLLCPLYGALSLNDQRKAI--------LPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + PLYG L Q+ + R+V+LAT IA+TSLTI +++V+D Sbjct: 248 HCEVLPLYGKLDFKAQQAVLALNKHSDDSSNKANKRRVILATAIAQTSLTIPSVKVVIDS 307 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 R ARFD TGLTRL T++VSQA QR GRAGR G+ +++ R Q++P Sbjct: 308 GLSREARFDANTGLTRLHTRKVSQAESIQRTGRAGRTSEGVCYRWWSEDAQNRFMEQAQP 367 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE---RLSAQ 407 +I+ +DLS L +EL +WG S ++WL P + A LLQ LGALE + +L+A Sbjct: 368 QIITADLSNLALELAKWGASHHQDLTWLTPVPEGHWQQAVGLLQELGALEKQDALKLTAL 427 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS--DLGVAFSRNQPAW 465 G M+ R+ ++++ E + + A++ E DL Sbjct: 428 GDAMSQFSASARIGRLILAGIAIKENTLSTLLGALIMEGNSGQTQQIDLSEQALGFHTKT 487 Query: 466 QQR----SQQLLKRLNVRGG--------------------EADSSLIAPLLAGAFADRIA 501 Q+ QQLL+++N I+ LLA A+ DRIA Sbjct: 488 NQKVAKTQQQLLQQMNKLAQSLVNKIEQTSSHLAASDLANFTQEDKISYLLACAYPDRIA 547 Query: 502 RRRGQDG-----RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDI 556 +++G D Y+LANG A L + A+++ ++IA S ++ LA ++ Sbjct: 548 KQQGLDNSSQWQDYKLANGRLAQLHKSQAVAKAGFIIALETGGNSKFNKDQVFLASPLNP 607 Query: 557 DELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGI 616 +L + V W L + + +G L + + L++ SE+ A+ I Sbjct: 608 HLFKDALHELTSVVEKVSWPKNSERLLSSQDTMVGGLCIVSKTLSQISEEAQTHAVCQHI 667 Query: 617 RDKGLSVLNWTAEAEQLRLRLLCAAK-----------WLPEYDWPAVDDESLLAALETWL 665 R GL +LNW A ++R RL + + ++ WP VDD SLL LE WL Sbjct: 668 RSLGLHLLNWDKAALRIRHRLAFIHQMAESDQPNLPAQITQFQWPKVDDTSLLDTLEIWL 727 Query: 666 LPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPP 725 P++ V + L L + L LDW QQ L + P V +G++I + Y PP Sbjct: 728 APYLASVSTHAKLSQLPLADILLNQLDWNQQQALANLAPESLKVASGNQIRLDYQA-FPP 786 Query: 726 ALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKG 785 +L V++QEMFG P IA +V +ELLSPAQ+PL IT+DL FW+ AY EV+KEM+G Sbjct: 787 SLKVKLQEMFGTLKTPEIAGTKVK--IELLSPAQKPLAITQDLEHFWQNAYHEVKKEMRG 844 Query: 786 RYPKHVWPDDPANTAPTRRTKK 807 RYPKH WPD+P + +TKK Sbjct: 845 RYPKHPWPDNPLEAIASAKTKK 866 >UniRef50_D1N9R3 ATP-dependent helicase HrpB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9R3_9BACT Length = 824 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 351/819 (42%), Positives = 481/819 (58%), Gaps = 19/819 (2%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLA 60 S LPV +VLPEL++AL+ +LSA GAGK+T +P LL +GKI+LLEPRR+A Sbjct: 8 SDLPVRSVLPELVSALERHGSAVLSAAPGAGKTTLVPPALLEAFAPASGKILLLEPRRVA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+A +L E G+ VGY +R + TR+ VVTEGVL R++Q DP L GVGLV Sbjct: 68 ARAAARRIASILGEPVGERVGYVVRGDSKQSARTRILVVTEGVLLRLLQDDPMLDGVGLV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERSL ADL LAL LD+++ LR +LKL+IMSATLD R+ +L APV+ + GR Sbjct: 128 IFDEFHERSLDADLDLALTLDLRENLRPELKLVIMSATLDLARVAGILGGAPVIDAPGRQ 187 Query: 181 FPVERRYLPLPAHQRFDD-AVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 FPVE+R+ + AVA A + ++++G +L+FLPG+ EIQ V L S + +D Sbjct: 188 FPVEQRWSAEAVDRFRPAPAVARACIGLYKEKAGDMLVFLPGMREIQEVAAMLESALPAD 247 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 L+ PL+G+LS +Q A+ P P G RKVVLATN+AE+SLTI+G+ LVVD ER RF Sbjct: 248 ALILPLHGSLSPAEQDAALAPTPPGRRKVVLATNVAESSLTIDGVTLVVDSGLERRMRFS 307 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 P G++ L T R+S+AS QRAGRAGR PG +L L ++ + A Q+ PEI ++L+ Sbjct: 308 PAAGMSFLETCRISKASAAQRAGRAGRTAPGTALRLWSEFDHRQLAEQTPPEIFDAELTS 367 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDP 418 +EL +WG + P Q+ WLD PP AA+RLL+ LGA + RL+A+G+K+A L P Sbjct: 368 FALELARWGAT-PEQLRWLDAPPAAGFAAAQRLLRELGAFDGANRLTARGRKLAGLPVHP 426 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRS--------- 469 RL ML++A E AA+IAA+LEE + D R + ++ Sbjct: 427 RLGMMLLAAAERGETPLAAEIAALLEERDSFRSFDGVDLGERIRRMRRRPGEFRNQLVIK 486 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMGAMLDANDALSR 528 +QLL + E D L A AF D I R R + R Y L+ G GA L ND L R Sbjct: 487 KQLLGLMKAPDRELDPDRSGVLTAFAFPDWIGRARSRHSRSYLLSGGAGASLPENDVLCR 546 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 E+L L GSA D+RI LA +D EL + + VE+D + A R Sbjct: 547 SEFLAVARL-TGSAGRDSRIELAAPLDRAELEAAFADRLAEHTAVEFDPERERAVARRET 605 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE-AEQLRLRLLCAAKWLPEY 647 ++G L + P P + A+LN ++G+ + + A L ++ AA+ P Sbjct: 606 RLGALVLSAAPAEPP-PGAIPAAVLNAALERGIELPPSDQKGAAALLKKVRFAARQEPNR 664 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHY 707 +P ES L LP + V S L+ D + L+ L + + + L+ E P + Sbjct: 665 -YPDWSPESWQTVLPGLALPFLGAVRSFAELRKADWHTILQNALGYDLLRELNQEYPDFF 723 Query: 708 TVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRD 767 T P G+ I Y + P L VR+QE++G T+PT+ + + PL LELLSPA RP+Q+T D Sbjct: 724 TTPVGASHRIDYDREQ-PTLPVRVQELYGVKTHPTVGRSKFPLRLELLSPAHRPVQVTTD 782 Query: 768 LSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806 L FW G+++ VQKEMKGRYPKH WPDDPA+ PT RTK Sbjct: 783 LPGFWAGSWKLVQKEMKGRYPKHFWPDDPADAVPTTRTK 821 >UniRef50_C8WC01 ATP-dependent helicase HrpB n=3 Tax=Zymomonas mobilis RepID=C8WC01_ZYMMN Length = 837 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 290/829 (34%), Positives = 445/829 (53%), Gaps = 26/829 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV+++ L L ++ AP G+GK+T + LL G+IILL PRRLA Sbjct: 8 LKELPVSSIFEPLAETLRNRSNAVIIAPPGSGKTTAIAPILLQEDWCQGQIILLSPRRLA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A+ A+R+A+++ E G TVGY R ++ +R+ VVT+G+ IQ+DPEL + V Sbjct: 68 AKAAAERIAQIMGEPVGQTVGYLTRMESQRSDKSRILVVTQGIFRHQIQQDPELPNISAV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-----PEAPVVI 175 + DE HERSL +D +LAL LDVQ LR DL+L+ MSAT+D R ++ +A ++ Sbjct: 128 LFDEVHERSLDSDFSLALALDVQSALRPDLRLIAMSATMDGTRFSDLMAEEGAGKASLLE 187 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 S+GR +P+ Y + +A L + G +L FLPG+ EI+R L Sbjct: 188 SQGRCYPLHYYYEGRRPDLSIEQNMATVIRRALLENDGGILAFLPGIAEIERTAALL-EN 246 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + S++LL L+ ++ +Q AI P+G RK+VLA+ IAETSLT++GIR+VVD R Sbjct: 247 LPSNILLYRLHSSVDFREQHAAIQAVPKGYRKIVLASAIAETSLTLDGIRIVVDSGLTRR 306 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 AR+D ++GLTRL+T+RVS+AS QRAGRAGR + G L + + PEI ++ Sbjct: 307 ARYDRQSGLTRLVTERVSRASAEQRAGRAGRQDVGYVWRLWEEAAQVGLSPYDPPEITEA 366 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAAL 414 DLS L ++ WG + P Q+ W+D PP + A + L+ L A+ +R G+ +AAL Sbjct: 367 DLSALTLDCALWGVT-PNQLRWIDSPPEKAIEEAYKRLENLQAISSDKRPLPHGRDLAAL 425 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR----MGNSDLGVAFSRNQPAWQQRSQ 470 M++ AK A A +A +L E + + F R + Q+++ Sbjct: 426 PMPLPFGHMILKAKAKGWGALAVDVAVLLSERGIGGMDIDIENRLNRFYREKTLRSQKAR 485 Query: 471 QLLKRLN--------VRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL-ANGMGAMLD 521 QL R + + + +A AF DR+A+RR G + A G G LD Sbjct: 486 QLANRWRKQVGLTISSKRDVIEMGDVGACVALAFPDRVAKRRDTKGEQWISAGGRGFRLD 545 Query: 522 ANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 L++ EWL + ARIL A + +++ + + V ++ A + Sbjct: 546 PLSPLAQSEWLAVAEAQGSAQ--SARILSAATLMTEQINALFSEKIVVEQNVRFNFATKS 603 Query: 582 LKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAA 641 ++ R ++ + + P E+ + A++ ++ GL +L W+ A LR R A Sbjct: 604 VETERLQRLDAIILSRGQDDSPDEEAIASALMAAVQQYGLDILPWSDAALALRERWAFVA 663 Query: 642 KWLPEYDWPA---VDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 E + + D++LL+ ++ WL P + G L +K+ D+ QAL +L W +Q+ Sbjct: 664 AHQSEEKAFSDGGLSDDTLLSKVDEWLYPLLLGCRRLDQIKASDLTQALENILGWQGKQK 723 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 LD +PA P GS I Y D PA+ VR Q +FG +P + GRV LVL L+SPA Sbjct: 724 LDQWVPARLITPAGSSHVIDYKADGGPAVEVRPQALFGMKKHPMLLNGRVALVLRLVSPA 783 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 RP+Q T++L+DFW G++ + KEM+GRYP+H WP+DPA+ PT RT+K Sbjct: 784 GRPIQTTQNLTDFWAGSWNMIAKEMRGRYPRHPWPEDPASAEPTLRTQK 832 >UniRef50_A5GWY8 HrpA-like helicase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GWY8_SYNR3 Length = 839 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 338/837 (40%), Positives = 476/837 (56%), Gaps = 45/837 (5%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP+ +LP+LL L +++L AP GAGK+T +PL L A P G++++LEPRRLAA+ Sbjct: 7 LPIEPLLPQLLETLRVHGRLVLQAPPGAGKTTRVPLALAAAEPWSQGRVLVLEPRRLAAK 66 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+++A L E G+TVGYR+R +CVGPNTR+E+VT+G+ R++Q DP LSGV V+ Sbjct: 67 LAARQMARSLGEAVGETVGYRVRLDSCVGPNTRVELVTDGLFLRLLQEDPALSGVSAVLF 126 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER + +DLALAL +Q L DL ++ MSATLD + L ++L APV+ SEGR+FP Sbjct: 127 DEVHERGIGSDLALALTWQARQLLVPDLAVVAMSATLDAEPLARLLDNAPVLSSEGRAFP 186 Query: 183 VERRYLPLPAHQR-----FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 VE Y PA + D V A E L + GS+L+FLPG EI+R+ EQL + Sbjct: 187 VETIYAERPAPDQPSPRAIADQVRPAIREALATQQGSVLVFLPGQAEIRRLMEQLQDALP 246 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +DV L PL+G L Q A+ A G RKVVLAT +AE+SLTI+GI +V+D RV+R Sbjct: 247 ADVELTPLFGDLDARAQDAAVAAAAPGRRKVVLATALAESSLTIDGIEVVIDAGWSRVSR 306 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP TGL RL+T++ + A QR GRAGRL PG+ L +R Q +PEIL SD Sbjct: 307 FDPSTGLARLLTEKAAVAQADQRRGRAGRLGPGVCWRLWTAVDQQRRPLQPQPEILSSDP 366 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA-LEGERLSAQGQKMAALGN 416 + L +EL WG ++ ++++LD PP L A+ LLQ LGA L + + +G+ MAALG Sbjct: 367 APLALELALWGSAEGEELAFLDPPPSGPLQQARVLLQELGAMLPNGQPTPRGRAMAALGL 426 Query: 417 DPRLAAMLVSAKNDDE---------------AATAAKIAAILEEPPRMGNSDLGVAFSRN 461 PRL AM++ A + A A +AA+L E + +G Sbjct: 427 HPRLGAMVLRAADLQLPATALKLPPLSAEQRQALACVMAALLGERDPLRQDAVGADLCLR 486 Query: 462 QPAWQQRSQ------------QLLKRLNVRGGEA-----DSSLIAPLLAGAFADRIARRR 504 +QR + QL ++L + ++ + +LA A+ DR+A R Sbjct: 487 LDLLEQRGRAGAIAPIRQLALQLRRQLRLPKSVPLLPEGWAAWVGIVLALAYPDRLALPR 546 Query: 505 GQD--GRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQR 562 Q+ G L++G GA L+ D L+ E L+A L ARI LA + L Sbjct: 547 AQERPGVMVLSSGRGAALEPQDPLAASEALVAAHLD--GDRRQARIWLAAPLPRAALELL 604 Query: 563 CPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLS 622 P+ + D VEWDD + + A R+ ++G L + P +P + +L ++ +GL Sbjct: 605 QPEQLLDDDVVEWDDERQQVMARRQRRLGALLLSDAPQPQPDAVAVQAVLLEQLQRRGLQ 664 Query: 623 VLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLD 682 L WT QLR RL + PE WPAVD+ SLLA LE WL PH+ GV S L+++D Sbjct: 665 WLGWTPAQMQLRGRLAFLHQLDPEL-WPAVDEASLLAELELWLGPHLEGVRSAAQLQAID 723 Query: 683 IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPT 742 + AL LDW + +LD P +T+P+G I Y + P L+ R+Q+ FG P Sbjct: 724 LQGALLDRLDWRARSQLDELAPLRWTLPSGRNGRIDYSGEE-PVLSSRLQDFFGLQQTPR 782 Query: 743 IAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANT 799 +A GR +++ LLSPA RP +TRDL FW+ Y V+K+++GRYPKH WP+DP Sbjct: 783 LAGGRHAVLVHLLSPAGRPAAVTRDLESFWQQGYPLVRKDLRGRYPKHRWPEDPLQA 839 >UniRef50_UPI0000E0EA09 ATP-dependent helicase HrpB n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0EA09 Length = 885 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 311/883 (35%), Positives = 461/883 (52%), Gaps = 82/883 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 SLP+ +L L L V+L+A GAGKST +PL LL+ + GKI++LEPRR+A + Sbjct: 5 SLPIHGILSTLHEILTVDDCVVLAAQPGAGKSTQVPLSLLSASWVTGKILILEPRRVAVK 64 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 ++A LA L E G TVGY++R + V TR+EV+TEG+LTR +Q DPEL+ V +VI Sbjct: 65 SIAHYLAYQLGESVGHTVGYQIRHERNVSQQTRIEVITEGILTRRLQSDPELADVSVVIF 124 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER++ ADLAL L +VQ+GLRDDL++L+MSAT+D + L A V+ GRSFP Sbjct: 125 DEFHERAVHADLALLLCREVQEGLRDDLRVLVMSATMDTLSVSDYLGGARVIDCPGRSFP 184 Query: 183 VERRYLPLP----------AHQRFDDAVAVATAEMLRQ--ESGSLLLFLPGVGEIQRVQE 230 VE Y P +++ V+ A L Q + G +L+FLP G I Sbjct: 185 VEISYHPPKLSKHQSMNRLSNRDIASMVSDALEHALVQLSDHGDVLVFLPSQGAIHAAMN 244 Query: 231 QLASRIG--SDVLLCPLYGALSLNDQRKAILPAPQGM-------------------RKVV 269 Q +R+ S + LYGA+SL+ Q + I P+ R+++ Sbjct: 245 QCETRLKDQSKIACYALYGAMSLSAQEEIIRPSSALYSPASSSSATASESVSSNPPRRII 304 Query: 270 LATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEP 329 ATNIAETS+TI + +V+D E+ A FD ++GLT+L+TQR++++S QRAGRAGR++ Sbjct: 305 FATNIAETSVTIPNVTMVIDTGLEKSALFDVKSGLTKLVTQRIAKSSADQRAGRAGRVQA 364 Query: 330 GISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAA 389 G + L ++ Q + A + I +DLS +EL WG DP +WLD PP ++ A Sbjct: 365 GHCIRLWSETQQYQLADFAPLAINNTDLSAFTLELSAWGIHDPLAANWLDTPPTAHIEHA 424 Query: 390 KRLLQMLGAL-EGERLSAQGQKMAALGNDPRLAAMLVSA--------------------- 427 +L L + +LS +GQ++ +G +PRL AML+SA Sbjct: 425 LQLNTSLALIQSQGQLSTKGQQLLDMGIEPRLGAMLLSADSTVEQALACVLAALLTERDI 484 Query: 428 -------KNDDEAATAAKIAAILE--EPPRMGNSDLGVAFSRNQPAWQQRSQQLLK---R 475 + A+++A++ R L + Q + + R Sbjct: 485 ANDPAFVQQHFGVDVLARLSAVIHTLITSRSSKGSLHHIQQLALRWFGQITGNIQTTHSR 544 Query: 476 LNVRGGEAD----SSLIAPLLAGAFADRIARRRGQD------GRYQLANGMGAMLDANDA 525 +++ A L A AF DRIA+RR D Y +ANG G L N+ Sbjct: 545 QAFYDALGQISDVATMSARLCAVAFVDRIAKRRAADPDLSQKISYTMANGRGVSLMPNEP 604 Query: 526 LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW 585 L+ WL+ + + D R+ LAL V ++Q V + E+ A + Sbjct: 605 LASSLWLVI--VDCDGQNNDGRVFLALAVSEAVIMQL--DSVNTENVYEYSVANNKITGR 660 Query: 586 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP 645 R+ +IGQL + PL+ ++ L + + ++GL L W EQ LR+ A++ P Sbjct: 661 RQTRIGQLVINETPLSTIPDEVLIPCFMQVVAEQGLRFLQWDKRCEQWSLRVQWLAEYCP 720 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 + + P +D+ LL L WLLP+ G+ ++R L+ L + L +L + QQ L P Sbjct: 721 D-ELPLIDEAYLLGHLNDWLLPYCHGIKTIRQLQQLALMPLLEAILTYEQQQFLAKHAPV 779 Query: 706 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT 765 YT P+G I Y + P++ + +QEMFG+ T+P +A G+VPL LLSPA+R LQ T Sbjct: 780 KYTAPSGLSCHITYSKHQAPSVHIVLQEMFGQLTSPLLANGQVPLCFTLLSPARRDLQTT 839 Query: 766 RDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 DL+ FW +Y +V+K+MKGRYPKH WP+ P P R K Sbjct: 840 SDLAHFWTHSYFDVRKDMKGRYPKHRWPEKPLEERPGRSIKPK 882 >UniRef50_UPI0001B58540 ATP-dependent helicase HrpB n=2 Tax=Actinomycetales RepID=UPI0001B58540 Length = 806 Score = 771 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 334/814 (41%), Positives = 452/814 (55%), Gaps = 20/814 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV AVLP +L+ALD +L AP G GK+T +PL L G++++ EPRRLA Sbjct: 7 LPDLPVRAVLPSVLSALDDHGAAVLVAPPGTGKTTLVPLAL---NRGEGRVVVAEPRRLA 63 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A LL E G+TVGY +R V TR+EVVT G+L R +Q DPEL+GV V Sbjct: 64 ARAAAGRMAALLGEPVGETVGYAVRGDRKVSSRTRIEVVTSGLLVRRVQHDPELAGVSTV 123 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER L ADL LALLLDV+ GLRDDL+LL SAT+ + RL +L +APV+ + R+ Sbjct: 124 LLDECHERHLDADLLLALLLDVRAGLRDDLRLLATSATVASGRLAALLGDAPVITAHART 183 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE Y +R + AVA A + L + G +L FLPG GEI R L+S D Sbjct: 184 YPVELSYRAPVRGERPEAAVASAVRKALSEGDGDVLAFLPGAGEIARTSALLSSL---DA 240 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LS Q +A+ P+ R+VVLAT +AE+SLT+ G+R VVD RV R D Sbjct: 241 DVLPLHGRLSAARQDEALR--PRDRRRVVLATAVAESSLTVPGVRAVVDSGLARVPRVDH 298 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 R GL L T RVS A QRAGRAGR PG + + + A EPEI ++L+ Sbjct: 299 RRGLAGLATVRVSAAVAEQRAGRAGREAPGRAYRCWPEHEQATLPAYPEPEIRTAELARF 358 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPR 419 +EL W D ++W D P L AA+ LL LGA ++ +GQKMA LG PR Sbjct: 359 ALELACWSTPDGTGLAWWDPPGEGALAAARSLLVTLGATTADGAVTPRGQKMADLGLHPR 418 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAF-SRNQPAWQQRSQQLLKRLN- 477 LA L+ A AA++ A+L+ + + + + +R Q+ KRL Sbjct: 419 LARALLDGAEAVGARAAAEVVALLDTGATLTDVEAELRRLRSAHDDAARRWQRDAKRLAA 478 Query: 478 -VRGGEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHEWLIAP 535 V A ++A A +R+ARRR Y +A+G A L + L EWL Sbjct: 479 LVNSPAKADPDPALVVALAHPERLARRRAGSAPVYLMASGTAAELPSGSGLGDAEWLAVA 538 Query: 536 LLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTV 595 + I LA D V+ P LV + D V WD G + A ++G + + Sbjct: 539 EATRDPGRVHGTIRLAATADETLAVRAAPTLVSEVDEVRWD---GEVVARHVRRLGAIVL 595 Query: 596 KVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDE 655 +PL P +H A++ G+R +GL +L W+ + +LR RL + L E WP+V DE Sbjct: 596 SEKPLRNPDPQLVHDAVVAGLRAEGLGLLRWSQDGTRLRERLAFLHRVLGE-PWPSVADE 654 Query: 656 SLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRI 715 SLL+ +++WL ++ V L ++D ALRGLL W RLD P VP+GS Sbjct: 655 SLLSDVDSWL--DLSRVRRRADLANVDAGSALRGLLPWPEAARLDELAPDRLEVPSGSHY 712 Query: 716 AIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGA 775 + Y D P LAV++QE FG P++A GRVP+VL LLSPA RP +T DL FW+ Sbjct: 713 RVDYQGDQ-PVLAVKLQETFGWTETPSLADGRVPVVLHLLSPAGRPAAVTADLESFWRTG 771 Query: 776 YREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 Y V+ +++GRYPKH WP+DPA PTR T + S Sbjct: 772 YAAVRADLRGRYPKHPWPEDPATAKPTRHTTRRS 805 >UniRef50_B1ZU70 Helicase ATP-dependent domain protein n=5 Tax=Verrucomicrobia RepID=B1ZU70_OPITP Length = 865 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 255/866 (29%), Positives = 407/866 (46%), Gaps = 82/866 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP--GINGKIILLEPRRLA 60 LP+ + +++A+ ++++ APTG+GKST +P LL H G G++++L+PRRLA Sbjct: 5 ELPIYELESAVVSAVRAHGRLIVQAPTGSGKSTQIPQMLLQHGLLGERGEVVVLQPRRLA 64 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR +A+R+AE + + GDTVGY++R ++ V TR+ VTEG+L R + D L GV V Sbjct: 65 ARLLAKRVAEEMGSRLGDTVGYQIRLESRVSDRTRIRFVTEGILLRQMSFDASLRGVSAV 124 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHER L D++LA L +QQ R DLK+L+MSATLD LQ L ++S+GRS Sbjct: 125 VFDEFHERHLYGDISLARALQIQQSTRPDLKILVMSATLDAGALQTYLAPCETLVSQGRS 184 Query: 181 FPVERRYLPLP---AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-SRI 236 FPV YLP H D A + ++G +L+F+PG EI R + + SR Sbjct: 185 FPVRIEYLPKTVNFDHDAVWDVAARECERIATTQAGDMLVFMPGAYEISRTVQAIQGSRA 244 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 D + PL+G L + Q +A+ RK++++TN+AETSLTIEG+ V+D R+A Sbjct: 245 LRDCVCFPLHGELPPDAQDRAVARY--DTRKIIVSTNVAETSLTIEGVTAVIDSGLARMA 302 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 RFDP G+ L+ +++S AS QRAGRAGR PG+ + L + + + A Q PE+ + D Sbjct: 303 RFDPHRGINTLLIEKISAASADQRAGRAGRTAPGVCVRLWTEREHAQRAPQELPEVKRLD 362 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL----------------- 399 L+ +++ L G D A WL++P L A+ LL LGA+ Sbjct: 363 LAEVVLTLKASGIDDVANFPWLEKPDPKALERAEMLLADLGAIGAATPSSRQDRRDEGVA 422 Query: 400 --EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR-MGNSDLGV 456 ++ G+KM PR A ML++A+ A +AA+ + + V Sbjct: 423 PPGETSITDVGRKMLRFPVHPRYARMLLAAQERGCVRPVALMAALTQGRSFLLRGVSRDV 482 Query: 457 AFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR------------ 504 +R ++ + S+ A R+ Sbjct: 483 DDAREDALGEEHESDFFLLMRAWSYADRSNYSLEACRRLGIHAQAARQVGPLFQQFLEIA 542 Query: 505 ----------------------------------GQDGRYQLANGMGAMLDANDALSRHE 530 R +L + +L A+ + Sbjct: 543 EKEGLDVGERRVESSDVRKCVLAGFSDHLAKRLDAGTLRCELVHQRRGLLARESAIHKAP 602 Query: 531 WLIAPLLLQ---GSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRR 587 L+A + + + + LA ++ L + P +Q+ V +D+ + + R Sbjct: 603 LLVAAEISEVEGRGGEINVLLSLATAIEEPWLEEIFPDDYRQTRGVVYDEQAKRVVSRRE 662 Query: 588 LQIGQLTVKVQPLAKPSE-DELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPE 646 + L ++ + + +E + + + + W EQ R+ A+W PE Sbjct: 663 RRFRDLVLEAKVSGDEAPLNEAAALLTKEVLAGRIKLEAWDEAVEQWITRVNRMAEWFPE 722 Query: 647 YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAH 706 + + D +E G S R ++ + LR L LD LP Sbjct: 723 LEVNPITDADRATLIEQ----VCYGELSARDVRDKPVMPVLRDWLTQEQLAVLDDYLPER 778 Query: 707 YTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITR 766 T+ G R +RY D PP L+ R+QE++G TI GRVP+ +E+L+P QRP+Q+T Sbjct: 779 LTMANGRRSKLRYENDGPPILSARIQELYGINGKFTIGHGRVPVKIEVLAPNQRPIQVTD 838 Query: 767 DLSDFWKGAYREVQKEMKGRYPKHVW 792 DL++FW+ Y +++ E+ RYP+H W Sbjct: 839 DLTNFWREQYPKIKTELSRRYPRHEW 864 >UniRef50_Q47W70 ATP-dependent helicase HrpB n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47W70_COLP3 Length = 845 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 325/836 (38%), Positives = 473/836 (56%), Gaps = 33/836 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP+ A+ + +LD ++LSAP GAGKST LPL LL P + N KI LL+PRRLA + Sbjct: 9 LPIEAIKQQFCQSLDEQNTLILSAPPGAGKSTCLPLWLLTLPSLANKKIYLLQPRRLAVK 68 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 N+A LA L EK G+TVGYR+R + +TRLEV+TEG+LT++IQ+D EL G LV+ Sbjct: 69 NIATFLAAQLKEKVGETVGYRLRNDSKTSTSTRLEVITEGILTQIIQKDAELLGTALVVF 128 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHERSLQ DLA AL +VQ LRDDLK+L+MSATLD + L Q LP+A ++ SEGRS+P Sbjct: 129 DEFHERSLQGDLAFALTREVQTELRDDLKILLMSATLDIEYLSQALPDAYLLNSEGRSYP 188 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 +E Y AHQR+ + + + GS+L+FLPGV +I+ + + L ++ V + Sbjct: 189 IEVSYQAPRAHQRWREHALAVIKDKMYNHIGSILVFLPGVADIRFLLDSLMAQKVEGVKI 248 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 CPL+G LSL +Q++AI P G RK+VLATNIAETSLTI+GI LV+DC E+VA FD + Sbjct: 249 CPLFGELSLKEQQQAIAPCLSGHRKIVLATNIAETSLTIDGIDLVIDCGLEKVAVFDSAS 308 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 + +L+ +++S+AS QRAGRAGRL G + L K+ ER S +I Q+DL L+ Sbjct: 309 LMNKLMQKQISKASAVQRAGRAGRLMHGQCIRLYGKDDFERRPLHSVNDIQQADLLPTLI 368 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDPRLA 421 E +WG + A++ L+ P A + LQ L ++ + L+ G+K + L PR A Sbjct: 369 EAARWGVTALAELPLLELPSKAKEQQAWQELQSLDIVDDKYLLTKHGEKASCLPCHPRFA 428 Query: 422 AMLVSAKNDD--------------EAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ 467 M++ A+ E K + + L + N+ + Sbjct: 429 HMILMAQTQGPNITLLACLIAALLEERDILKGEQAKYDCDLIHRLQLLIQHKSNKNPLLE 488 Query: 468 RSQQLLKR------LNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD 521 R Q R L R + D + LLA A+ +R+A+ RG G + NG G +++ Sbjct: 489 RILQQASRLAQNVQLRFRVHDLDLAKTGVLLAYAYPERVAKTRGNHGDFICVNGKGTLVN 548 Query: 522 ANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 DAL+ ++++ Q + LA + ++E+ ++Q D +D+ G Sbjct: 549 EQDALAGEDFIVIAQTSQLGGQLT--VRLASQISLEEITNTFAAQIKQQDIANFDNKSGR 606 Query: 582 LKAWRRLQIGQLTVKVQPLAK-PSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 + A R+ +G + + QPL + + + + + + KGLS L+W A+ L+ R L Sbjct: 607 IIAKRQTSLGAIVLSDQPLKQEVTAESISAMWCSLVMKKGLSFLSWQAKDLALKARWLWL 666 Query: 641 AKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLD 700 K+ PEYD +DDE LLA L TW P + G+ + L LD+ L LL + Q+ L Sbjct: 667 NKYFPEYDLVVIDDELLLAKLTTWFAPFVGGIKTKAQLDKLDLSSMLLSLLSYQEQKILK 726 Query: 701 SELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA--------QGRVPLVL 752 P Y PTG I Y +D P +++ MQE++G P + +PL+L Sbjct: 727 QAAPTVYVGPTGRHCPISYSQDESPKVSLPMQELYGLTITPNVGAIAGISEQNQGIPLLL 786 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ELLSPAQRP+Q+T+DL FW G+Y+ VQK+MK RYP+H WPDDP N T + K++ Sbjct: 787 ELLSPAQRPIQVTQDLVKFWSGSYQAVQKDMKSRYPRHYWPDDPVNAKATNKMKRH 842 >UniRef50_Q5QVR0 Helicase, ATP-dependent n=1 Tax=Idiomarina loihiensis RepID=Q5QVR0_IDILO Length = 820 Score = 764 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 307/829 (37%), Positives = 458/829 (55%), Gaps = 36/829 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 +LP+ +VLPEL A A V+ AP GAGKST LPL LL +G I++L+PRR+AA Sbjct: 2 TLPIESVLPELAKAFPAARVVI-EAPPGAGKSTQLPLFLLQQGIADDGLIVMLQPRRVAA 60 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 N+A LA+ L E G+ VGY +R + T+L ++TEGVL R +Q DPELSG+G +I Sbjct: 61 LNIAHYLAKQLGEPVGEQVGYTVRGDSKRSKATKLLIITEGVLVRWLQDDPELSGIGTLI 120 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----APVVISE 177 DEFHER+L +DL+LAL++D LR DL LLIMSATL + L+ L V+ SE Sbjct: 121 FDEFHERNLHSDLSLALVIDALP-LRPDLNLLIMSATLPAENLKLWLENYCDQVQVLRSE 179 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 GRS+PVE Y P ++ + E +L+FLPGV EIQ++ +L+ R+ Sbjct: 180 GRSYPVEYHYRPASHVTQWLAELPKVVVEAFAAAEKGVLVFLPGVYEIQKIATELSQRMP 239 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 ++ PL+G + L QR+ + + + ++++LATNIAETSLT++GI +VVD +ER A+ Sbjct: 240 PGTIILPLHGRIPLQQQRQVLKASDE--KRIILATNIAETSLTLDGIDVVVDSGRERRAQ 297 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + P+ GL++L TQR+++AS TQRAGRAGR + G L A+ A + P++ DL Sbjct: 298 YLPQYGLSQLTTQRIAKASATQRAGRAGRQQAGQCFRLWARSDEHGFADYAPPDVATQDL 357 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGND 417 S L++++L+WG S+ +Q++W QP + AA L G + +L+A+ +++ + G D Sbjct: 358 SALVLDVLRWG-SEVSQLAWFSQPDPGHCAAATDFLASTGLIRQGQLTAKARQLESGGFD 416 Query: 418 PRL------AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQ-------PA 464 PR+ A ML +++ A A++ A LEEP + ++ P Sbjct: 417 PRILLVADAAKML----KNEQQAAMARVLATLEEPQTSIKTADLSERTQQHYQQRNQAPL 472 Query: 465 WQQRSQQLLKRLNVRGGEADSSL----IAPLLAGAFADRIARRRGQDGRYQLANGMGAML 520 WQQR + L ++ + +A L + DR+A+ +QLA G Sbjct: 473 WQQRWRYWLNHFGLKEAAETAEASAEGLAVALLQGYPDRVAKYDVSRCDFQLACGGRVS- 531 Query: 521 DANDALSRHEWLIAPLLLQGSASPDARILLALLVD-IDELVQRCPQLVQQSDTVEWDDAQ 579 + L + W I + R L VD L++ +Q T EW Q Sbjct: 532 GDSSRLKQPAWAIIFDVTFHEQDTIGRSRCLLPVDDAQALLKEAGIPLQTLQTAEWVGEQ 591 Query: 580 GTLKAWRRLQIGQLTVKVQP-LAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 L+ R Q+G L + + S ++ +A +RDKGL LNW+ A+QL+ R+ Sbjct: 592 QQLRQITRTQLGSLVLSQTTNSGQVSNEQKAEAFCLWLRDKGLDKLNWSQRAKQLQRRVY 651 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR 698 + E + D LL +LE W P+ T SL+ L+ D Y+AL D+ QR Sbjct: 652 WL-QQAGELSAYDMSDAGLLNSLERWTAPYWTNFRSLKQLQQWDPYEALCYFFDYSELQR 710 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPA 758 L+S P + PT ++ I Y +D PP + V++QEMFG + +P I R + ++LLSPA Sbjct: 711 LNSACPEWWQTPTERKVFINYLDD-PPRVEVKLQEMFGVSESPKIIDNRQVVTVDLLSPA 769 Query: 759 QRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 R LQ T DL+ FW+ AY +V+KEM+GRYPKH WP+DP N T +TK+ Sbjct: 770 GRLLQRTNDLASFWQNAYADVRKEMRGRYPKHPWPEDPLNATATFKTKR 818 >UniRef50_A4S6B1 Predicted protein n=2 Tax=Mamiellales RepID=A4S6B1_OSTLU Length = 936 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 332/895 (37%), Positives = 468/895 (52%), Gaps = 91/895 (10%) Query: 2 SSLPVAAVLPELLTALD-----------------------CAPQVLLSAPTGAGKSTWLP 38 + LP+ AV+ L AL+ A + ++ AP GAGK+T +P Sbjct: 44 AKLPIDAVVDACLDALEVRRRRAKARRGTDEANDWVRCEQRATRAVMQAPPGAGKTTVMP 103 Query: 39 LQLLAHPGING------KIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGP 92 L G K+I+LEPRRLAA+ A R+AE+L E+ G+TVGY++R + Sbjct: 104 LAAALAAASAGGDGRAGKVIVLEPRRLAAKAAAMRMAEMLGERAGETVGYQVRFERRASA 163 Query: 93 NTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 TR+EVVTEGVLTR ++ DPEL VGLV+ DEFHER+L AD+ALAL +VQQ +R DL+L Sbjct: 164 ATRVEVVTEGVLTRRLRNDPELRDVGLVVFDEFHERNLDADVALALCREVQQTIRPDLRL 223 Query: 153 LIMSATLD--NDRLQQML-----PEAPVVISEGRSFPVERRYLPLPAHQR--FDDAVAVA 203 L+MSATL R+ +L PE PV++SEGRS+PVE YL P + A A Sbjct: 224 LVMSATLGEMGARVAALLRDENGPEVPVIVSEGRSYPVETIYLGAPGAGWGELERATTNA 283 Query: 204 TAEMLR-QESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAP 262 + +R G +L FLPG EI RV L + + V+ PLYGALS +Q A+ P+ Sbjct: 284 VKDAVRACPDGDVLCFLPGAAEINRVVRDLQRELPNGVVALPLYGALSQEEQAAALAPSK 343 Query: 263 QGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAG 322 G R+VV++T IAE+SLTI G+++VVD + +FD R G+TRL T RVS+AS QR G Sbjct: 344 PGTRRVVVSTPIAESSLTINGVKVVVDSGLCKTPKFDARKGMTRLETTRVSRASADQRRG 403 Query: 323 RAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPP 382 RAGR+ PG L ++ + + PEILQ+DL+ + ++L WG D A M+WLD PP Sbjct: 404 RAGRIAPGTCYRLWSEASNAKLQPDTTPEILQADLTPVALDLAAWGVGDGADMAWLDPPP 463 Query: 383 VVNLLAAKRLLQMLGALEGERL--SAQGQKMAALGNDPRLAAMLVSAKNDDE--AATAAK 438 L+AA+RLL+ LGALE +L S G M+ L PRLA ML+ + A A + Sbjct: 464 EGPLIAARRLLRELGALEEGKLVPSDVGSIMSELPVHPRLARMLLFGASRGAESARLACQ 523 Query: 439 IAAILEEPPRMGNSDL------------------------GVAFSRNQPAWQQRSQQLLK 474 +AA++ + + D R +Q ++QLL Sbjct: 524 LAAVIGDRDLISGRDAPLDVRCRLRALWGQDPLASAGDLDEEKPERAVREAKQVAEQLLG 583 Query: 475 RLNVRGGEADSSL--IAPLLAGAFADRIARRRGQDGRYQLANGMGAML---DANDALSRH 529 L LLA A+ DR+A R+ + G +QL+ G A + +DAL R Sbjct: 584 NLRRLASSHPDFCAPAGLLLAVAYPDRVAARKNRGGAFQLSGGGAASVGSEHKDDALLRS 643 Query: 530 -----EWLIAPLLLQGSAS----PDARILLALLVDIDELV---QRCPQLVQQSDTVEWDD 577 E L+ L A + R+ LA +D L L ++SD V W Sbjct: 644 GDKANETLVVVELAGDGAGNAGSRNDRVRLAAPIDRACLESGGALYEALSKESDDVFWAS 703 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLA-KPSEDELHQAMLNGIRDKGL-SVLNWTAEAEQLRL 635 A ++ A RRL +G L ++ P + K + + AML+GIR+ GL S Sbjct: 704 ASKSVFARRRLTVGSLVLREIPFSVKDNPEATVSAMLDGIREMGLASAFGLNKATTSWLK 763 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL-DWG 694 R + + +P + +E+LL++ WL P + G S L +D+ ++ + Sbjct: 764 RAEYVHRSGVDATFPNLSEENLLSSAGEWLAPWIAGAQSKSDLAKVDVASLVKAHFCTYD 823 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 + +D P +P+GS + Y D P +A R+QE FG P + G V L L Sbjct: 824 HLKLVDDACPVAVRLPSGSNAKVDYDGD-VPVVAARIQEFFGTTETPRV--GGVNCELHL 880 Query: 755 LSPAQRPLQITRDLSDFWKGAYR-EVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LSPA R +TRDL+ FW+ AYR +V+KE+ GRYPKH WPDDP + A T +TKKY Sbjct: 881 LSPAGRTQAVTRDLASFWRNAYRTDVRKELAGRYPKHFWPDDPESAAATSKTKKY 935 >UniRef50_B0SIC0 HrpA-like helicase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIC0_LEPBA Length = 821 Score = 755 bits (1949), Expect = 0.0, Method: Composition-based stats. Identities = 264/826 (31%), Positives = 422/826 (51%), Gaps = 26/826 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 + PV + L +++ ++ P +L AP G+GK+T LPL+LL GK I +LEPRR+ Sbjct: 5 FETFPVLSALQKIVDSIQNYPVTILDAPPGSGKTTALPLELLHSGIAQGKKICILEPRRI 64 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA+N A+R+++ + E G+T+GYR+R + NT++E +T+G+LTR + DPELS GL Sbjct: 65 AAKNAAKRMSQSIGEPVGNTIGYRVRFDSQTNHNTKIEFLTDGILTRYLLSDPELSEYGL 124 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHER L++DL AL Q+ R+DLK+LIMSATL+ ++ P + Sbjct: 125 LIFDEFHERRLESDLCFALARKSQEIFRNDLKILIMSATLEGQNFSKIGIPNPPIQVSME 184 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR--IG 237 + P+E Y+ + + +Q G +L+FL G EI ++ +L S + Sbjct: 185 THPLEIFYMGESKKNNQI-RLLDLIPKATKQMEGDILVFLSGKKEILDLKYRLESMPSVH 243 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 ++ PL+G +SL+DQ K LP +G +K++L+TNIAE+S+TI G+R+V D + + Sbjct: 244 ESSVVLPLFGDMSLSDQEKVFLPDTKGKKKIILSTNIAESSVTIPGVRVVFDTGFFKHSV 303 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FD +G+T L+ R+S +S QRAGRA R G L +KE+ +++PEIL+ DL Sbjct: 304 FDADSGITHLVRDRISLSSAKQRAGRAAREGKGFVYRLWSKEEESSFYDRTKPEILEGDL 363 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 L++E+ +G + + +LD P ++L + L+ LG L+ ++L++ G+ Sbjct: 364 DRLVLEVKSFG-EEIHSLPFLDPPNKGSMLLSIERLKQLGCLDENDQLTSLGKNALQYPV 422 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPP------RMGNSDLGVAFSRNQPAWQQRSQ 470 RL ++L + + A I +IL + S FS ++ Sbjct: 423 PIRLGSILSRLPKHEGTS-IADIISILGKESQGTEAKEFFKSASPNQFSLELKNVYEQIM 481 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRH 529 + K + + F DRIA+R+ ++G Y+L+NG L++N L Sbjct: 482 NIFKHKSENRTHTKQFHRDHYICLGFPDRIAKRKEKEGKEYKLSNGKIGFLNSN-LLELP 540 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE---WDDAQGTLKAWR 586 E+LIA L S I L V +D + ++ E + L Sbjct: 541 EFLIA--LDTFSFGQTLYITQYLPVSLDLIEDCLENQIKIRQNPEIRTNQKEESFLIVKE 598 Query: 587 RLQIGQLTVKVQPLAKPSEDELHQAMLNGIRD-KGLSVLNWTAEAEQLRLRLLCAAKWLP 645 IG+L + + L KP+ + A+ + D S + R+L + Sbjct: 599 ERSIGELVLGSKELHKPNPHSIQTALEGYLLDLDWESEWKKKEDLIHYYNRVLFLVQNGV 658 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 V E L + + WL P + L L +A + + + Q + E P+ Sbjct: 659 LD--LNVSFEHLKSNAKDWLFPFLNFETQKFNLSHLPFLEAFKAYVGYENQSLIQKEAPS 716 Query: 706 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT 765 VP+GS+I I+Y + P L V++QE+FG P +A+G+V +++ LLSPA+RP+QIT Sbjct: 717 SIQVPSGSQIPIQYTNNE-PELHVKLQELFGLKQLPNLAKGKVKILIHLLSPARRPVQIT 775 Query: 766 RDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRT--KKYS 809 +DL FW Y EV+KE+KGRYPKH WPD P PT+ K S Sbjct: 776 KDLESFWNIGYHEVKKELKGRYPKHPWPDKPWEAVPTKHLNHNKRS 821 >UniRef50_D2JWV9 Putative pre-mRNA splicing factor n=1 Tax=Filobasidiella depauperata RepID=D2JWV9_9TREE Length = 1087 Score = 751 bits (1940), Expect = 0.0, Method: Composition-based stats. Identities = 175/611 (28%), Positives = 276/611 (45%), Gaps = 36/611 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 SLP+ + +L+ A+ +++ TG+GK+T + L + G++ +PR++AA Sbjct: 448 SLPIYKLRDQLVAAIRDNQILVVVGDTGSGKTTQMAQYLAEEGFLERGRLGCTQPRKVAA 507 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE + + G VGY +R ++ T+++ +T+G+L R + DP+ S +++ Sbjct: 508 VSVAKRVAEEVGCRLGAEVGYTIRFEDMTSLETKIKYMTDGMLLRELLVDPDCSKYSVLM 567 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL R DLKL+ SATLD + P+ GR+F Sbjct: 568 LDEAHERTIATDVLFGLLKKAC-KRRPDLKLICTSATLDAAKFATYFWGCPIFTIPGRAF 626 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P + ++ L + G +LLFL G EI E L R+ Sbjct: 627 PVETLYTKEPEPDYLEASLITILQIHLMEPPGDILLFLTGQEEIDTACEILYERVKALGP 686 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++L+ P+Y AL Q + PA G RKVV+ATNIAETS+TI+GI V+D + Sbjct: 687 QVPELLILPVYAALPSEMQSRIFEPAAPGARKVVIATNIAETSITIDGIYYVIDPGFAKQ 746 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 +DP+ G+ LI +SQA QRAGRAGR PG L + PEI + Sbjct: 747 NAYDPKLGMDSLIVTPISQAQARQRAGRAGRTGPGKCYRLYTEIAYRNEMLPNPIPEIQR 806 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 ++L+ ++ L G +D ++D PP +L A L LGAL+ L+ G+KMA Sbjct: 807 TNLASTILTLKAMGINDLISFDFMDPPPAATMLTALEQLYALGALDDEGLLTRIGRKMAD 866 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILE--EPPRMGNSDLGVAFSRNQPAWQQRSQQ 471 DP L+ ML+ + + + A I A+L+ D + + Q Sbjct: 867 FPLDPPLSKMLIKSVDYGCSEEALTIVAMLQAGGQVFYRPKDKQAQADAKKAKFHQAEGD 926 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ-------------------L 512 LL L V G +S P F A + QD R L Sbjct: 927 LLTLLTVYNGWKNSKFSNPWCFENFIQTRAMKTAQDVRKLALTQSSPPSVSDPSEGYKTL 986 Query: 513 ANGMGAMLDANDALSR--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 G + + AL + EW + L+ + + ++ L P + + Sbjct: 987 VEGTPVSIHPSSALFQRPPEWCVYYELVLTAKE---YMHQVTAIEPKWLSDVAPTFFRVA 1043 Query: 571 DTVEWDDAQGT 581 D + + Sbjct: 1044 DQNKISKRKAA 1054 >UniRef50_C4DH66 ATP-dependent helicase HrpB n=5 Tax=Actinomycetales RepID=C4DH66_9ACTO Length = 841 Score = 751 bits (1940), Expect = 0.0, Method: Composition-based stats. Identities = 297/831 (35%), Positives = 431/831 (51%), Gaps = 39/831 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 LPV VLPEL ALD + +L AP G+GK+T +PL L H ++G++I+ EPRR+A R Sbjct: 25 DLPVRHVLPELREALDGNGRAVLVAPPGSGKTTLVPLALADH--LDGRVIVAEPRRVAVR 82 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+R+A L + G+ +GY +R TR+EVVT GVL + + RDPEL GV +++ Sbjct: 83 AAARRMAALSGTRLGEEIGYTVRGDRKTSARTRVEVVTTGVLVQRLHRDPELPGVAAIVV 142 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA-PVVISEGRSF 181 DE HER L DLAL +DV+ LRDDL+LL SAT ++L + A P+V + Sbjct: 143 DECHERHLDTDLALGFAVDVRANLRDDLRLLATSATARAEKLASFMGTATPIVTATASPH 202 Query: 182 PVERRYLPLP----------AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 P+ + P + D VA + L + G +L+FLPG GEI +V + Sbjct: 203 PITTVWAPPARPVSPPHGLWVDPKLLDHVAATVHKALAEREGDVLVFLPGAGEIDKVAAR 262 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L++ DV + L+G Q A+ P R+VVLA+ +AE+SLT+ G+R+VVD Sbjct: 263 LST--VPDVDVLTLHGRQDSRQQDAALQ--PGARRRVVLASAVAESSLTVPGVRVVVDAG 318 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R R D GL L+T RVS+ S TQRAGRA R PG + + +R A PE Sbjct: 319 LSREPRVDHARGLPSLVTVRVSRDSATQRAGRAAREAPGTVYRCWPEFEHDRLPAYPRPE 378 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQK 410 I +DL+ ++ L +WG ++ LD+P A L+ LGA++ ++ +G+ Sbjct: 379 IATADLTAFILHLARWG----GEVPLLDRPADSATETAMSTLRTLGAVDGTGTITQRGEA 434 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQ 470 +AA+G PRLA L+ + A + ++ A+L DL + + Q Sbjct: 435 LAAIGTHPRLARALLDGADSIGARQSCEVVALLSADTSPSTDDLAAELRALRQRRDRAWQ 494 Query: 471 QLLKRL------------NVRGGEADSSLIAPLLAGAFADRIARRRGQDGR-YQLANGMG 517 +RL + A ++ AF +R+ARR DGR Y + G Sbjct: 495 TETRRLESSLPKRLADATRPAAPRSADQAAALIVGLAFPERLARRTTPDGRVYLMTGGTQ 554 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 A L +S EWL + AR+ LA D + + L+ ++ + W Sbjct: 555 AELAPGSRVSGVEWLAIASADRQPGRAAARVRLAAPCDPETALAAAAPLLTETRDIAW-- 612 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 G ++A RR +G +T+ +PL P DE A+ +G+R +GL++L + EAE LR RL Sbjct: 613 RDGDVRAHRRESLGAITLVERPLT-PKPDEASAALRDGLRAEGLNLLRPSREAETLRSRL 671 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 + WP VDD +LL L+ WL P + L+ D+ ALR LL W Sbjct: 672 AFCRHVFGD-PWPDVDDAALLLRLDDWLGPELAKARRRADLERADVASALRRLLPWEQAA 730 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 LD P+ TVP+GS++A+ Y + P LA ++QE FG T PTIA GR LV+ LLSP Sbjct: 731 ALDRVAPSRVTVPSGSKLAVDYTDPTAPKLAGKLQEFFGWTTTPTIADGRAKLVVHLLSP 790 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 A RP +T DL FW+ Y +V+ E++GRYPKH WP+DP T R K+ Sbjct: 791 AGRPAAVTGDLESFWRTGYPQVRAELRGRYPKHPWPEDPTTAEATSRVKRR 841 >UniRef50_D0D680 ATP-dependent helicase HrpB n=1 Tax=Citreicella sp. SE45 RepID=D0D680_9RHOB Length = 866 Score = 750 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 336/831 (40%), Positives = 477/831 (57%), Gaps = 37/831 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 M+ LP+ LP L+ AL + +L AP GAGK+T +PL +L +I++LEPRRLA Sbjct: 48 MTRLPIDDALPSLIAALRTRGRAVLQAPPGAGKTTRVPLAMLDAGLTTDRIVMLEPRRLA 107 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+AE L E PG+TVGYR+R + V TR+EVVTEG+LTRMIQ DP L+GVG V Sbjct: 108 ARAAAQRMAETLGEAPGETVGYRIRGEAKVSDATRIEVVTEGILTRMIQSDPALTGVGAV 167 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DEFHERSL ADL LAL L++ LRDDL LL MSATLD + + +++ +AP++ SEGR+ Sbjct: 168 VFDEFHERSLNADLGLALCLEIAGALRDDLLLLAMSATLDAEPVAELM-DAPIITSEGRA 226 Query: 181 FPVERRYL--PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPVE R+L PLP +RF++A+A A + G +L FLPG GEI+R + L R+ Sbjct: 227 FPVETRWLDAPLPKQRRFEEAMADLVARAASETEGGILAFLPGEGEIRRTEALLRKRLPP 286 Query: 239 DVLLCPLYGALSLNDQRKAILP-APQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 V + L+GA+ QR AI P +G+RK+VLAT+IAETSLTIE IR+VVD + R AR Sbjct: 287 QVRVHTLFGAMEFAAQRAAIRPETERGVRKLVLATSIAETSLTIEDIRVVVDGGRARRAR 346 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FDP +G++RL+T+RV++A TQRAGRAGR+ PG + L K + EI +DL Sbjct: 347 FDPGSGMSRLVTERVTRAEATQRAGRAGRVAPGTAYRLWTKGEEGAMLPYPPAEIESADL 406 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGN 416 +GL +EL WG P+++ +L P L A+ LL MLGAL+ R++ G+ +A L Sbjct: 407 AGLALELALWGAQ-PSELPFLSAPGAGALAEAQALLTMLGALDETGRITEHGKILAKLPL 465 Query: 417 DPRLAAMLVSAKNDD----------------EAATAAKIAAILEEPPRMGNSDLGVAFSR 460 PRL ML A + A ++ A+ R +R Sbjct: 466 HPRLGHMLTLAGPRAADLAALLADRDPLVGAPSDLALRLEAM--TDLRRFTESRPHQVNR 523 Query: 461 NQPAWQQRSQQLLKRLNVRGGEADSSLI--APLLAGAFADRIARRR-GQDGRYQLANGMG 517 + + L+R R + A + A A+ DR+ RR G R+QL+ G G Sbjct: 524 AALERIRTEARRLRRQAPRDAGRGYGDLVPAAMAALAYPDRVGLRRKGDAPRFQLSGGKG 583 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 A+L+ +D L+ ++ +ARI A+ + EL P+ ++ D+ W Sbjct: 584 AVLEPSDPLASARLIVVTDTD--GNPREARIRQAVQITESELRDLFPETIRWQDSCHWSK 641 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRL 637 + A ++ ++G + + + + + +AML G+R+ G L T A + R Sbjct: 642 RDRRVVARQQERLGAIALDDRAWKDAPSEAIARAMLEGVRELG---LPLTDAARRFCARA 698 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQ 697 + D P + + +LL LE WLLP++ GV S K D ALR LDW QQ Sbjct: 699 EIGRE--GGLDLPDMREPALLETLEDWLLPYIEGVRSAEDWKRFDPLPALRARLDWAQQQ 756 Query: 698 RLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSP 757 LD+ +P +T P G IAI Y ++ P +A+R+QEMFG+ T+P +A R PL + LLSP Sbjct: 757 ALDAAVPGKFTTPLGREIAIDYSGEH-PEIALRLQEMFGQRTHPMVA--RRPLRVTLLSP 813 Query: 758 AQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 A+RP+Q T DL FW G+Y +V+K+MK +YP+H WP+DP PT R K+ Sbjct: 814 ARRPVQTTMDLPGFWDGSYADVRKDMKAQYPRHPWPEDPREADPTLRAKRR 864 >UniRef50_Q7UT94 ATP-dependent helicase n=1 Tax=Rhodopirellula baltica RepID=Q7UT94_RHOBA Length = 846 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 277/850 (32%), Positives = 427/850 (50%), Gaps = 63/850 (7%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA---HPGINGKIILLEPR 57 M+ LP+ VL L TA+D V+L AP GAGK+T +P +L + G+I +++PR Sbjct: 18 MNRLPIEDVLSPLQTAIDSGNAVVLKAPPGAGKTTGVPPAVLQTLLDNDVAGQIWVIQPR 77 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 RLAAR+VA +A NE G+T+GY +R +TR+ +T G+ R +Q DP L V Sbjct: 78 RLAARSVADWIARSRNESIGETIGYHVRLDRRESKSTRVLFMTTGMFLRRMQSDPLLENV 137 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP-----EAP 172 VILDEFHER+L+ DLALA+ ++ LRDDL L++MSAT++ + + + L A Sbjct: 138 ACVILDEFHERTLELDLALAMTHRLRSELRDDLGLVVMSATMETEPIVEYLNEVHSQNAV 197 Query: 173 VVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 + EGR+FPV Y +R + + + L SG +L+FLPGVGEI+RVQ +L Sbjct: 198 SLRCEGRAFPVSVHYGEDQPGERIERRMVKPIRDALESSSGHVLVFLPGVGEIRRVQSEL 257 Query: 233 ASR-IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 + +DV L+G+LS Q +AI P+ RKVVL+TNIAETS+T+ G+ VVD Sbjct: 258 ERVDLPNDVRTVVLHGSLSPKQQDEAIRPSAD--RKVVLSTNIAETSVTVNGVTAVVDSG 315 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 +V RFD R GLT+L T +S AS QR+GRAGR PG + L ++ PE Sbjct: 316 MAKVPRFDSRRGLTKLETTSISLASADQRSGRAGRTAPGEAYRLWSQAAQRSRDEYDVPE 375 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQK 410 IL+SDLS +++ L G +D M WL PP ++ A+ LL+MLGA++ R++ GQ Sbjct: 376 ILRSDLSEVVLMLASHGETDLHAMQWLTAPPEHSVETAQALLRMLGAIDESGRITRAGQV 435 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQ 470 MA + PR+A M A ++ A +AA++ E + + + R Sbjct: 436 MAEMPLHPRIARMTTEAVGSLPRSSVAILAALMSERDPLEDMTSMTLADKVDAIENNRVP 495 Query: 471 QLLKRLNVRG-----------------------GEADSSLIAPLLAGAFADRIARRRGQD 507 + + +++ +A L A+ DR+ RR Sbjct: 496 RSVSAFSIKSLRSVAETIRRSLPEGEPGQGEAAKMDRDVAVARALLSAYPDRVVLRRADS 555 Query: 508 G-RYQLANGMGAMLDANDALSR-------HEWLIAPLLLQGSASPDARILLALLVDIDEL 559 R ++ G G L+R E L+ + ++R+ A+ + + L Sbjct: 556 PDRGRMVGGRGV-----SGLTRALGEGVNEELLLCFDVD--GGGTESRVRAAVPIQEEWL 608 Query: 560 VQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDK 619 ++V T WD +G ++ R++ G L ++ P P ++E + + + Sbjct: 609 D---GEMVHTVQTQSWDAERGAVRCRRQVTYGDLILRETPAKVPGDEETASILFDNAK-- 663 Query: 620 GLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLK 679 + + A+ ++L R+ + + P+V + L L G SL+ L+ Sbjct: 664 -MQLPLGGAKFQKLLHRIEMVGEV--DDQVPSVTEAMHLELLRQ----MCVGRSSLQELR 716 Query: 680 SLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAT 739 S + G + + Q + E P +P G ++A+ Y E PP + V++Q FG Sbjct: 717 SAPWKDHVLGTIGYSAWQIVQEEAPEEVQLPGGRKVAVHYVEGKPPWIEVKIQLCFGWPE 776 Query: 740 NPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANT 799 P I +GR PL L LL P RP QIT DL+ FW Y E++KE++ RYPKH WP+DP + Sbjct: 777 TPRILRGRQPLQLHLLGPNGRPQQITNDLASFWGSTYGEIRKELRRRYPKHDWPEDPLSA 836 Query: 800 APT-RRTKKY 808 A + K+ Sbjct: 837 AASFNGMKRR 846 >UniRef50_Q14562 ATP-dependent RNA helicase DHX8 n=78 Tax=Eukaryota RepID=DHX8_HUMAN Length = 1220 Score = 749 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 178/636 (27%), Positives = 285/636 (44%), Gaps = 61/636 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAA 61 SLP+ + +L+ A+ +++ TG+GK+T + L GKI +PRR+AA Sbjct: 564 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAA 623 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E G VGY +R ++C P T ++ +T+G+L R DP+L+ +++ Sbjct: 624 MSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIM 683 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL Q R D+KL++ SATLD + Q EAP+ GR++ Sbjct: 684 LDEAHERTIHTDVLFGLLKKTVQK-RQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTY 742 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P D ++ L + G +L+FL G EI E L R+ Sbjct: 743 PVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGP 802 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 803 DVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQ 862 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 ++ +TG+ +L+ +SQA QRAGRAGR PG L + + + PEI + Sbjct: 863 KVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQR 922 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 ++L+ ++ L G +D ++D PP+ L+ A L LGAL+ L+ G++MA Sbjct: 923 TNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAE 982 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P L ML+ + + + I ++L D + + + Q Sbjct: 983 FPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDH 1042 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG--------------- 517 L L V ++ P F + RR QD R Q+ M Sbjct: 1043 LTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVR 1102 Query: 518 ------------------------------AMLDANDAL--SRHEWLIAPLLLQGSASPD 545 + + AL + EW++ L+ + Sbjct: 1103 VQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKE-- 1160 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + +D LV+ P + SD + + Sbjct: 1161 -YMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQ 1195 >UniRef50_Q09530 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 n=44 Tax=Eukaryota RepID=MOG5_CAEEL Length = 1200 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 178/627 (28%), Positives = 288/627 (45%), Gaps = 61/627 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 SLP+ A+ L+ A+ +++ TG+GK+T + + G GKI +PRR+AA Sbjct: 539 SLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGKIGCTQPRRVAA 598 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE K G VGY +R ++C +T ++ +T+G+L R DP+LSG L++ Sbjct: 599 MSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDLSGYSLIM 658 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL + R +LKL+I SATLD+ + + EAP+ GR+F Sbjct: 659 LDEAHERTIHTDVLFGLLKAAARK-RPELKLIITSATLDSVKFSEYFLEAPIFTIPGRTF 717 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P + A L + G +L+FL G EI E L R+ Sbjct: 718 PVEILYTREPESDYLEAAHITVMQIHLTEPPGDVLVFLTGQEEIDTSCEVLYERMKSMGP 777 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+YGAL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 778 DVPELIILPVYGALPSEMQTRIFDPAPAGKRKVVIATNIAETSLTIDGIFYVVDPGFVKQ 837 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 ++P++G+ L+ +SQA+ QR+GRAGR PG L + + PEI + Sbjct: 838 KIYNPKSGMDSLVVTPISQAAAKQRSGRAGRTGPGKCYRLYTERAFRDEMLPTPVPEIQR 897 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAA 413 ++L+ L++L G ++ ++D PP+ +++ A L L AL+ L+ G++MA Sbjct: 898 TNLASTLLQLKAMGINNLIDFDFMDAPPLDSMITALNTLHTLSALDGDGLLTKLGRRMAE 957 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P L+ +L+ + + + I A+L + + + + Q Sbjct: 958 FPLEPSLSKLLIMSVDLGCSEEVLTIVAMLNVQNIFYRPKEKQDHADQKKAKFHQPEGDH 1017 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ--------------------- 511 L L V + P F + +R QD R Q Sbjct: 1018 LTLLAVYNSWKNHHFSQPWCFENFIQVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSR 1077 Query: 512 ------------------------LANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPD 545 L +G + + A + EW++ L+ + Sbjct: 1078 VQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKE-- 1135 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDT 572 + +D LV+ P + D+ Sbjct: 1136 -YMREVTAIDPKWLVEFAPSFFKIGDS 1161 >UniRef50_Q7PT33 AGAP007212-PA n=4 Tax=cellular organisms RepID=Q7PT33_ANOGA Length = 1288 Score = 746 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 179/626 (28%), Positives = 282/626 (45%), Gaps = 61/626 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAA 61 SLP+ + +L+ A+ +++ TG+GK+T + L GKI +PRR+AA Sbjct: 631 SLPIYKLRDDLIKAVTDNQILIVIGETGSGKTTQITQYLAESGFIARGKIGCTQPRRVAA 690 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE + G VGY +R ++C T ++ +T+G+L R D +L +++ Sbjct: 691 MSVAKRVAEEYGCRLGQEVGYTIRFEDCTSQETVIKYMTDGMLLRECLVDFDLKSYSVIM 750 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL Q R +LKL++ SATLD + Q EAP+ GR+F Sbjct: 751 LDEAHERTIHTDVLFGLLKQAVQK-RPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTF 809 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P D ++ LR+ G +LLFL G EI E L R+ Sbjct: 810 PVEILYTKEPETDYLDASLITVMQIHLREPPGDVLLFLTGQEEIDTACEILYERMKSLGP 869 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI VVD + Sbjct: 870 DVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQ 929 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 ++ +TG+ L+ +SQA+ QRAGRAGR PG + L + + PEI + Sbjct: 930 KVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKAYRLYTERAYRDEMLPTPVPEIQR 989 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 ++L+ +++L G +D ++D PPV +L+ A L L AL+ L+ G++MA Sbjct: 990 TNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHSLSALDNEGLLTRLGRRMAE 1049 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P L+ +L+ + + I ++L D + + + Q Sbjct: 1050 FPLEPNLSKLLIMSVALQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQIEGDH 1109 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG--------------- 517 L L V ++ F +R QD R QL M Sbjct: 1110 LTLLAVYNSWKNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKNTVR 1169 Query: 518 ------------------------------AMLDANDAL--SRHEWLIAPLLLQGSASPD 545 + + AL + EW++ L+Q + Sbjct: 1170 VQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVVYHELVQTTKE-- 1227 Query: 546 ARILLALLVDIDELVQRCPQLVQQSD 571 + +D LV+ P + SD Sbjct: 1228 -YMREVTTIDPKWLVEFAPAFFRFSD 1252 >UniRef50_P43329 ATP-dependent RNA helicase hrpA n=101 Tax=Bacteria RepID=HRPA_ECOLI Length = 1300 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 196/802 (24%), Positives = 348/802 (43%), Gaps = 89/802 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV+ ++L A+ V+++ TG+GK+T LP + GI G I +PRRLAA Sbjct: 76 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAA 135 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+AE L +PG +GY++R + V NT ++++T+G+L IQ+D L +I Sbjct: 136 RTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTII 195 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK++I SAT+D +R + AP++ GR++ Sbjct: 196 IDEAHERSLNIDFLLGYLKELLP-RRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTY 254 Query: 182 PVERRYLPLPAHQRFDD-----AVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE RY P+ + A+ A E+ ++ G +L+F+ G EI+ + L Sbjct: 255 PVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLN 314 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS ++Q + R++VLATN+AETSLT+ GI+ V+D R++ Sbjct: 315 LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 372 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ RT + RL + +SQAS QR GR GR+ GI + L +++ ++PEIL+++ Sbjct: 373 RYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTN 432 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE------RLSAQGQK 410 L+ +++++ G D A +++ P N+ RLL+ LGA+ + +L+ G++ Sbjct: 433 LASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQ 492 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRS 469 ++ L DPRLA M++ A+ A I + L + PR D A + + Sbjct: 493 LSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKE 552 Query: 470 QQLLKRLNVRG------------------------------------------------- 480 L +N+ Sbjct: 553 SDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPV 612 Query: 481 --GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSR--HEWLIAPL 536 A+ I L I + Y A + L + +W++ Sbjct: 613 NSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAE 672 Query: 537 LLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV 595 L++ S +A +D + + L++++ W+ AQG + A ++ + L + Sbjct: 673 LVETSRLWG---RIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPI 729 Query: 596 ---KVQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDWP 650 + ++ + + +G + + E +LR + D Sbjct: 730 VAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDIL 789 Query: 651 AVDDESLLAALETWLLPHMTGVHSLRGLKSL------DIYQALRGLLDWGMQQRLDSE-L 703 VDDE+L + + + D+ + +L +++ Sbjct: 790 -VDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDY 848 Query: 704 PAHYTVPTGS-RIAIRYHEDNP 724 P + G+ ++ + Y + Sbjct: 849 PNFW--HQGNLKLRLSYQFEPG 868 >UniRef50_Q6BRT9 DEHA2D13882p n=8 Tax=Saccharomycetales RepID=Q6BRT9_DEBHA Length = 1147 Score = 745 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 167/639 (26%), Positives = 278/639 (43%), Gaps = 65/639 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-----GINGKIILLEPR 57 SLP+ + +L+ A+ +++ TG+GK+T + L G I +PR Sbjct: 479 SLPIFPMRADLIKAVRENQFLVIVGETGSGKTTQIVQYLAEESLDKVEGEQKIIGCTQPR 538 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AA +VA+R+AE K G+ VGY +R ++ +TR++ +T+G+L R DP +S Sbjct: 539 RVAAVSVAKRVAEEYGCKVGEDVGYTIRFEDKTSKDTRMKYMTDGMLQREALNDPLMSRY 598 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 +++LDE HER++ D+ LL +LK++I SATLD ++ P+V Sbjct: 599 SVIMLDEAHERTIATDVLFTLLKKAV-ANNPNLKIIITSATLDANKFSNYFNSCPIVRIP 657 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 GR++PV+ Y P A+ + + G +L+FL G EI E L R+ Sbjct: 658 GRTYPVDILYTREPEMDYLSSALDSVIQIHISEPEGDILVFLTGQEEIDTSCEALYERMK 717 Query: 238 ------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 ++++ P+Y AL Q K P G RKV+LATNIAETS+TI+GI VVD Sbjct: 718 ILGDTVPELIILPVYSALPSEMQSKIFEATPPGSRKVILATNIAETSITIDGIYYVVDPG 777 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEP 350 ++ +D + G+ L +SQA QR+GRAGR PG L + + + P Sbjct: 778 FVKINAYDSKLGMDSLTISPISQAQANQRSGRAGRTGPGKCYRLYTESAFKTEMLPNTVP 837 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQ 409 EI + +LS ++ L G +D ++D PP ++ A + L L AL+ + L+ G+ Sbjct: 838 EIQRQNLSHTILMLKAMGINDLLNFEFMDPPPTNTMMNALQDLYTLSALDDDGYLTKLGR 897 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQR 468 KMA +P LA L+ + + + I A+L D + + + + Sbjct: 898 KMAEFPMEPALAKTLIISVDFGCSDEILTIVAMLSVQTVFYRPKDKQKQADQKKYRFHHQ 957 Query: 469 SQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG----------- 517 L LNV + + + + +R Q+ R QL M Sbjct: 958 YGDHLTLLNVYRSWSLNGNNKQWCVENYIQDRSMKRAQEVRKQLVLIMSKYRHPIISCGP 1017 Query: 518 ----------------------------------AMLDANDAL--SRHEWLIAPLLLQGS 541 L + AL +++I LL S Sbjct: 1018 NIDRVRKALCAGFFKHSSKRDPQEGYKTLVEQTPVHLHPSSALFGKSPDYVIYHTLLLTS 1077 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQG 580 + ++D L++ P +++D + + + Sbjct: 1078 KE---YMHCVTVIDAKWLLELAPGFFKKTDAAKLSEKRK 1113 >UniRef50_Q54MH3 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=5 Tax=Eukaryota RepID=DHX16_DICDI Length = 1106 Score = 742 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 180/627 (28%), Positives = 281/627 (44%), Gaps = 62/627 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 SLPV +L+ A+ +++ TG+GK+T +P L GKI +PRR+AA Sbjct: 466 SLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGCTQPRRVAA 525 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA R+AE + K G+ VGY +R ++C T L+ +T+G+L R P+L+ ++I Sbjct: 526 MSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVLI 585 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER+L D+ LL D+ + R DLKLLI SAT+D +R AP GR + Sbjct: 586 IDEAHERTLHTDILFGLLKDITR-FRPDLKLLISSATMDAERFSDYFDGAPTFNIPGRKY 644 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 V Y P D AV + + G +L+FL G E+ + E L +R Sbjct: 645 EVTTHYTQAPEADYLDAAVVTVLQIHITEPLGDILVFLTGQEEVDQAAEMLQTRTRGLGT 704 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ +Y L + Q K P P RKVVLATNIAETSLTI+GI V+D + Sbjct: 705 KIKELIITRIYSTLPTDLQAKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCKQ 764 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 F+PRTG+ L+ VS+AS QR GRAGR+ PG L + + PEI + Sbjct: 765 KMFNPRTGMESLVITPVSRASANQRKGRAGRVAPGKCFRLFTAWAFDNELEENTIPEIQR 824 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAA 413 ++L +++ L G +D ++D PP L+AA L LGAL + +L+ G+KMA Sbjct: 825 TNLGNVVLLLKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLGRKMAE 884 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRSQQ 471 DP+L+ M+++++ + I A+L D A + + Sbjct: 885 FPVDPQLSKMIIASEKYKCSEEILTICAMLSVGNTIFYRPKDKAFAADAARKLFFHPQGD 944 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL------------------- 512 L +NV +S F + +R QD R QL Sbjct: 945 HLTLMNVFNQWRESGYAVQWCFENFIQHRSMKRAQDVRDQLELLLERVEIPLVSNVDDTD 1004 Query: 513 ------ANG--------------------MGAMLDANDALSRHE--WLIAPLLLQGSASP 544 A+G + + L + W++ L+ + Sbjct: 1005 SIRKCIASGFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKE- 1063 Query: 545 DARILLALLVDIDELVQRCPQLVQQSD 571 + + + L + P + ++ D Sbjct: 1064 --FMRQIVEIQSSWLHEIAPHIYKEKD 1088 >UniRef50_UPI0001746914 ATP-dependent helicase HrpB n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746914 Length = 859 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 237/859 (27%), Positives = 387/859 (45%), Gaps = 74/859 (8%) Query: 2 SSLPVAAVLPELLTALD---CAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPR 57 S LP+ A+ L+ + ++ APTG+GKST +P LL H + +I++L+PR Sbjct: 6 SHLPIEAIRNPLVGWFNRTSKRANAVVKAPTGSGKSTQVPQMLLDHDLAGDKRIVVLQPR 65 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AAR +A R+A + G+ VGY++R +N TR+ VTEGV+ R + DP L V Sbjct: 66 RIAARMLAARVASERGVRLGEEVGYQVRFENVSSARTRILFVTEGVMLRHLLDDPTLGKV 125 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 G +++DEFHER L DL LA +Q R DL++++MSAT+ + L++ + + SE Sbjct: 126 GCLVIDEFHERHLDGDLCLAWARAIQAVHRPDLRIIVMSATITPEPLREFMNPCEIFDSE 185 Query: 178 GRSFPVERRYLPLPAH-----QRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQE 230 GR+FPV Y + D A A +++ +L+F+PG EI++ Sbjct: 186 GRTFPVSISYQAPQRDKRGFEEAIWDQAARAAEDLVTTRGVQDDILIFMPGGHEIRKTIS 245 Query: 231 QLASR-IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 L R + PL+G L Q + + P R+++++TN+AETSLTIEG+R V+D Sbjct: 246 ALQGRSFARGYRILPLHGELPPQQQDEVLQ--PGQGRRIIVSTNVAETSLTIEGVRAVID 303 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++ +D R G+ L Q++S+AS QR+GRAGRL PG+ + L + + A Sbjct: 304 SGLARISSYDARRGINTLTVQKISRASAEQRSGRAGRLGPGMGVRLWPEREHLHRAENEL 363 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--EGERLSAQ 407 PEI + DLS + L + W + P + A LL LGA+ + L+ Sbjct: 364 PEIRRLDLSEAFLTLKVVTKAAGMTFDWYESPTEESAHRATGLLAALGAIQGQDGSLTEL 423 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ 467 G++M+A PR + ML++A + AA AA+ + + + + Sbjct: 424 GRQMSAFPLHPRFSRMLITAAEFNCLEDAALCAALAQGRDLLMKPTELTKRKQEDFFQRD 483 Query: 468 RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIA---------------RRRGQDGR--- 509 + + A + A A RR G R Sbjct: 484 DLSEFQALMRAFDKAASTKFDPTACAPYGIHARAAHDAMRTYEQIGGLCRRMGLANRAQM 543 Query: 510 -----------------------------------YQLANGMGAMLDANDALSRHEWLIA 534 Y LA G L+ + + L+A Sbjct: 544 NNEDVPPPRAEDLARAILSAFSDHLGVETASGSRVYALAAGYKGHLEKDAHIKPPPLLVA 603 Query: 535 PLLLQGSASP-DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQL 593 + + ++ L ++ L + P V V +D + + + L Sbjct: 604 AEIAEIQGKALQVKLNLVTRIEETWLRELFPTDVTSGFHVAYDAINKRVMNLEQTRFRDL 663 Query: 594 TVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVD 653 + + +P+ + I K L + WT + EQ RL C A W+PE + P + Sbjct: 664 VLHSRERGEPNLGLAATLLAEEIVSKRLDLPTWTEKTEQWITRLNCLAIWMPELELPTIT 723 Query: 654 DESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGS 713 +E +E G + R +K AL L + L+ P + +G Sbjct: 724 EEDRRLLIEQI----CYGATAYRQIKDRTPDSALHAWLSAAHRDMLEQYAPERVKLASGR 779 Query: 714 RIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWK 773 + Y ++ PP +AV +Q ++ NP IA G+V +++E+L+P+QRP+Q T DL FWK Sbjct: 780 TARVEYRDNAPPQMAVILQHLYDTLENPRIAGGKVSVLVEILAPSQRPVQTTGDLGSFWK 839 Query: 774 GAYREVQKEMKGRYPKHVW 792 +Y+ V+ +++GRYP+H W Sbjct: 840 TSYQAVKTQLRGRYPRHEW 858 >UniRef50_C0NP73 ATP-dependent RNA helicase DHX8 n=10 Tax=Dikarya RepID=C0NP73_AJECG Length = 1266 Score = 741 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 182/636 (28%), Positives = 281/636 (44%), Gaps = 61/636 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 SLPV +LL A+ +++ TG+GK+T L L N G I +PRR+AA Sbjct: 601 SLPVFKFRKQLLEAVTENQLLIVVGDTGSGKTTQLTQYLAEGGFANNGIIGCTQPRRVAA 660 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + + G VGY +R ++C P T+++ +T+G+L R I DP+L +++ Sbjct: 661 VSVAKRVSEEVGCRLGAEVGYTIRFEDCTSPETKIKYMTDGILQREILLDPDLKKYSVIM 720 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL Q R DLK+++ SATLD D+ + P+ GR++ Sbjct: 721 LDEAHERTISTDVLFGLLKKTIQ-RRPDLKIIVTSATLDADKFSEYFNMCPIFSIPGRTY 779 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P D A+ L + +G +LLFL G EI E L R+ Sbjct: 780 PVEIMYSREPESDYLDAALVTVMQIHLTEPAGDILLFLTGQEEIDTACEILYERMKALGP 839 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+Y AL Q + PAP G RKVV+ATNIAETS+TI+ I VVD + Sbjct: 840 SVPELIILPVYSALPSEMQSRIFEPAPPGSRKVVIATNIAETSITIDQIYYVVDPGFVKQ 899 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 +DP+ G+ L+ +SQA QR+GRAGR PG L + + + PEI + Sbjct: 900 NAYDPKLGMDSLVVTPISQAQAKQRSGRAGRTGPGKCFRLYTEAAYQSEMLPTTIPEIQR 959 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 +LS ++ L G +D ++D PP +L A L L AL+ L+ G+KMA Sbjct: 960 QNLSHTILMLKAMGINDLLHFDFMDPPPTNTMLTALEELYALSALDDEGLLTRLGRKMAD 1019 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P LA +L+++ + I A+L + + + + Sbjct: 1020 FPMEPALAKVLIASVEMGCSDEMLSIVAMLSVHSIFYRPKEKQQQADQKKAKFHDPHGDH 1079 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA------------------- 513 L LNV G +S +P F RR QD R QL Sbjct: 1080 LTLLNVYNGWKNSRFSSPWCFENFIQARQMRRVQDVREQLVTIMERYKHKVVSCGRNTTR 1139 Query: 514 --------------------------NGMGAMLDANDALSR--HEWLIAPLLLQGSASPD 545 G + + AL E +I L+ + Sbjct: 1140 VRQALCSGFFRNAARKDPQEGYKTLIEGTPVYMHPSSALFGKAAEHVIFHTLVLTTKE-- 1197 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + ++ LV+ P + + T + Sbjct: 1198 -YMHCTTSIEPKWLVEAAPTFFKVAPTNRLSKRKKA 1232 >UniRef50_P45018 ATP-dependent RNA helicase hrpA homolog n=53 Tax=Bacteria RepID=HRPA_HAEIN Length = 1304 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 197/807 (24%), Positives = 339/807 (42%), Gaps = 99/807 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 SLPV+ E+ + ++++ TG+GK+T LP L N G I +PRR+AA Sbjct: 82 SLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLGMIGHTQPRRIAA 141 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE L + G VGY++R + + NT+++++T+G+L IQ D L+ +I Sbjct: 142 RSVAARIAEELETELGGLVGYKVRFNDQISDNTQIKLMTDGILLAEIQNDRFLNQYSCLI 201 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLKL+I SAT+D +R + AP++ GR++ Sbjct: 202 IDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFSKHFNNAPIIEVSGRTY 261 Query: 182 PVERRYLPLPAHQRFDDA--VAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE RY P+ D + A E+ + G +L+F+ G EI+ E L + Sbjct: 262 PVEVRYRPVVEEDDQDQLQGILNAVDELQAEGRGDILIFMNGEREIRDTAEALQKQNLKH 321 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + PL+ LS +Q K P G+ ++VLATN+AETSLT+ I+ V+D R++R+ Sbjct: 322 TEILPLFARLSAQEQNKIF--HPSGLNRIVLATNVAETSLTVPSIKYVIDPGTARISRYS 379 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 RT + RL + +SQAS QR GR GR+ GI + L ++E ++PEIL+++L+ Sbjct: 380 YRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFNSRPEFTDPEILRTNLAS 439 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL--------EGERLSAQGQKM 411 +++++ G D ++D P ++ +LL+ LGA E L+ G+++ Sbjct: 440 VILQMTALGLDDIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQL 499 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQ 470 A L DPRLA M++SA N I + L + PR + A + + Sbjct: 500 AQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQEKQQASDEKHRRFADKKS 559 Query: 471 QLLKRLNVRG-------------------------------------------------- 480 L LN+ Sbjct: 560 DFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFLNYLRIREWQDIYHQIRLTVREMSLPIN 619 Query: 481 -GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDAL--SRHEWLIAPLL 537 +A+ I L I + + +Y A + N L + +W++A L Sbjct: 620 SEKAEYQQIHTALLSGLLSHIGLKEAEKQQYLGARNAHFAIFPNSVLFKKQPKWVMAAEL 679 Query: 538 LQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVK 596 ++ S + ++ + + L+++S W ++G + A ++ + + + Sbjct: 680 VETSKLWG---RMVAEIEPEWIEPLAEHLIKKSYSVPLWSKSRGAVIADEKVTLYGVPIV 736 Query: 597 VQP---LAKPSEDELHQAMLNGIRDKGLSVLNWT------AEAEQLRLRLLCAAKWLPEY 647 + + +G W E ++L + Sbjct: 737 AVRPVNYGAIDPTVSREIFIQSALVEG----GWNTKHKFFKENQRLVREVEELEHKSRRR 792 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGL------KSLDIYQALRGLL---DWGMQQR 698 D VDD +L + + + K ++ L D + Sbjct: 793 DIL-VDDRTLFEFYDQRIGTEVVSQKHFDTWWKKAQQKDPELLNFEHSFLINDDAEQVSK 851 Query: 699 LDSELPAHYTVPTGS-RIAIRYHEDNP 724 LD P + G+ ++ + Y + Sbjct: 852 LD--FPNFW--HQGNLKLKLTYQFEPG 874 >UniRef50_Q3JBJ6 ATP-dependent helicase HrpA n=3 Tax=Chromatiaceae RepID=Q3JBJ6_NITOC Length = 1281 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 209/797 (26%), Positives = 338/797 (42%), Gaps = 85/797 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLPV E+ A+ V+L TG+GK+T LP L G+ G I +PRR+AA Sbjct: 53 SLPVIERREEIGAAIRNHQVVILCGETGSGKTTQLPKICLELGRGVAGMIGHTQPRRIAA 112 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ LN G VGY++R + V P+T ++++T+G+L Q D L +I Sbjct: 113 RTVANRIAKELNSDLGQIVGYKVRFHDQVSPSTYIKLMTDGILLAETQGDRFLDQYDTLI 172 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R Q +AP++ GR++ Sbjct: 173 IDEAHERSLNIDFLLGYLKQLLPK-RPDLKVIITSATIDTERFSQHFGQAPIIEVSGRTY 231 Query: 182 PVERRYLP-----LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE RY P + + + A E+ R G +L+FLPG EI+ E L Sbjct: 232 PVEIRYRPLCGEQETQERNLSEGILDAVDELSRLGPGDILVFLPGEREIRETAEALRKHH 291 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS +Q + P R++VLATN+AETSLT+ GI VVD R++ Sbjct: 292 PPHTEILPLYARLSSTEQNRVFK--PHSGRRIVLATNVAETSLTVPGIHYVVDPGLARLS 349 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ R+ + RL +++SQ+S QRAGR GR+ G+ + L ++E ++PE+L+++ Sbjct: 350 RYSVRSKVQRLPIEKISQSSANQRAGRCGRVATGVCIRLYSEEDFLGRPEFTDPEVLRTN 409 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 L+ +++++ +LD P + RLL LGA++ + L+ GQ++A L Sbjct: 410 LASVILQMKSLQLGAVEDFPFLDPPLPKMINDGLRLLAELGAVDKAQNLTPLGQRLARLP 469 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLK 474 DPR+ M+++ + IA+ L + PR + A +Q L Sbjct: 470 IDPRIGRMVLAGDEFHCLSEMLIIASALSIQDPRERPLEAQQAADEAHSRFQDERSDFLS 529 Query: 475 RLNVRGGEADS------SLIAPLLAGAFADRIARRRGQDGRYQL---------------- 512 L + + + F + R +D QL Sbjct: 530 YLKLWEDLHRQRARLSQNKLRAYCREHFLSYLRLREWRDIHQQLKLLATNIGFRPNQVAA 589 Query: 513 ----------------------------ANGMGAMLDANDAL--SRHEWLIAPLLLQGSA 542 A + + AL +W++A L++ S Sbjct: 590 EYGAIHRALLTGLLGNIAVKSEKDHYLGARNIKLQIFPGSALFKKSPKWIMAAELVETSR 649 Query: 543 SPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV---KVQ 598 A ++ + L LV++S W+ + A+ R+ + LTV + Sbjct: 650 L---YARCAGKIEPEWLEALALHLVKRSYFDPHWEKRPAQVIAYERITLYGLTVIPKRRI 706 Query: 599 PLAKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDES 656 + +E + + G + + ++L + D +D++S Sbjct: 707 HYGPVNPEEAREIFIREALVNGDYDTQAPFFRHNQKLIAEIEELEHKSRRRDVL-IDEQS 765 Query: 657 LLAALETWLLPHM---TGVHSLRGLKSLDIYQALRGLLDWGMQQRLDS------ELPAHY 707 L E L + G R Q L L R D+ P Sbjct: 766 LYQFYEERLPAGVYNGAGFKKWRQQAEKKNPQLLF--LSREELMRHDAKEITGVRFPDQM 823 Query: 708 TVPTGSRIAIRYHEDNP 724 TV G +A+ YH + Sbjct: 824 TV-KGLPLALSYHFEPG 839 >UniRef50_C4QEZ9 ATP-dependent RNA Helicase, putative n=21 Tax=Eukaryota RepID=C4QEZ9_SCHMA Length = 1569 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 177/638 (27%), Positives = 296/638 (46%), Gaps = 61/638 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 +LP+ + EL+ A++ +++ TG+GK+T + L +N G+I +PRR+AA Sbjct: 907 ALPIFRLKDELMKAVNDNKVLIVIGETGSGKTTQITQYLAEAGYVNTGRIGCTQPRRVAA 966 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + G VGY +R ++C P T+++ +T+G+L R DP+L +++ Sbjct: 967 MSVAKRVSEEFGCRLGQEVGYTIRFEDCTAPETKIKYMTDGMLLRECLIDPDLRQYSVIM 1026 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL Q RDD+KL++ SATLD+ + Q EAP+ GR++ Sbjct: 1027 LDEAHERTIHTDVLFGLLKKAIQK-RDDMKLIVTSATLDSVKFSQYFFEAPIFTIPGRTY 1085 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P + D A+ L + G +L+FL G EI E L R+ Sbjct: 1086 PVEILYSLEPENDYLDAALNTVMQIHLTEPPGDILVFLTGQEEIDSGCELLYERMKALGS 1145 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+Y AL Q + PAP G RKVV+ATNIAETSLTI+GI V+D + Sbjct: 1146 EVPELIILPVYAALPSEMQSRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFVKQ 1205 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 + ++G+ +LI +SQA QRAGRAGR PG L + + A + PEI + Sbjct: 1206 KVYSSKSGMDQLIVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLATNVPEIQR 1265 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 ++L+ +++L G +D ++D PP+ L+AA L L AL+ L+ G++MA Sbjct: 1266 TNLASTVLQLKAMGINDLLSFDFMDPPPLQTLVAAMETLHGLSALDDEGLLTRLGRRMAE 1325 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P L+ ML+ + + + + ++L + + + + Q Sbjct: 1326 FPLEPMLSKMLIMSVHLQCSEEVLTVVSMLSVQNVFYRPKEKTELADQRKAKFHQPEGDH 1385 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG--------------- 517 L L V ++ AP F +R QD R QL M Sbjct: 1386 LTLLAVYNAWKNNKFSAPWCYDNFLQARTLKRAQDVRKQLLGIMDRHKLDVVSCGKKTAL 1445 Query: 518 ------------------------------AMLDANDAL--SRHEWLIAPLLLQGSASPD 545 + + AL + +W++ L+ + Sbjct: 1446 AQKAILSGFFRNAAKKDPQEGYRTLVDQQVVYIHPSSALFNRQPDWVVYHELVMTTKE-- 1503 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583 + +D LV+ P + D + + +++ Sbjct: 1504 -YMREVTTIDPRWLVEFAPNFFKFGDPTKLSRTKKSMR 1540 >UniRef50_Q0C562 ATP-dependent helicase HrpB n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C562_HYPNA Length = 812 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 334/816 (40%), Positives = 463/816 (56%), Gaps = 20/816 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL---LAHPGI-NGKIILLEPRR 58 +LP+ +PE+L AL P+++L+AP GAGK+T +PL L L PG+ G+IILLEPRR Sbjct: 6 ALPIDEAMPEILRALAAGPRLVLAAPPGAGKTTRVPLALAGLLGAPGVIEGRIILLEPRR 65 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +AAR A+R+A L E+ G T+G R V TR+EV+T+G+ TR I D EL+G+G Sbjct: 66 VAARMAAERMASSLGERVGQTIGLTTRVDRKVSRGTRIEVITDGLFTRRILADQELTGIG 125 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V+ DEFHER L ADL LAL L+VQ LR+DL+LLIMSATLD + + + +APV+ SEG Sbjct: 126 AVVFDEFHERRLNADLGLALALEVQSILREDLRLLIMSATLDTGAVSRAI-DAPVIESEG 184 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 R +PVE RYL R +D + + LR+E GS+L FLPG EI R E L +G Sbjct: 185 RMYPVETRYLGKS-DDRIEDRMPKVIRQALREEPGSVLAFLPGAREINRTAEALTG-LGP 242 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 D+L+ PLYGALS +Q A+ PAP G RK+VLAT+IAE++LTIEG+R+V+D RVA Sbjct: 243 DILIAPLYGALSPGEQDAAVSPAPPGKRKIVLATDIAESALTIEGVRIVIDSGLSRVAEE 302 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 D +RL T R S+AS QR GRAGR PG+ L + A PEIL +DLS Sbjct: 303 DLGGLGSRLTTVRASRASADQRRGRAGRTSPGVCYRLWDEAATRGLMAAPTPEILVTDLS 362 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGND 417 GL + L +WG D ++W+D PP L A+ L LGAL+ L+ +G++MA L Sbjct: 363 GLALTLAEWGAPDAGALTWMDAPPAGKLKGARAGLIALGALDADGVLTPRGKEMARLPLP 422 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLN 477 PRLAA++ SA E A AA+IAA++ E G+S + + LK+ Sbjct: 423 PRLAALVASAPGAPEKALAAEIAAMMGERGMGGDSSDLTQRLQRFRTDGSPRARALKQQA 482 Query: 478 --VRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIA 534 GGE +A LLA A+ D++ARRR G G Y +A+G A + +D L++ +WL+ Sbjct: 483 KSWGGGETPGGDLAKLLARAWPDQVARRRPGSAGSYLMASGRAAGVQPSDGLAKSDWLVV 542 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLT 594 L G A+ + RILL L V Q + +D G A R +G + Sbjct: 543 ADL--GGAAKEPRILLGLPVTEA--EALASQKTITEERAAFDPKTGKFTARRVKALGAIV 598 Query: 595 VKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 + PL KPS + AML I G + + E+ RL A+ + P + Sbjct: 599 LSEAPLPKPSAEAAATAMLAAIETDGFAAIGAGDVIEETLSRLRILAEA-GLIEAPDISP 657 Query: 655 ESLLAALETWLLPHMTGVHSLRGL-KSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGS 713 ESL++ WL P + L + D+ +AL LDW +Q+ L + P +P+G Sbjct: 658 ESLVSGAPVWLKPALK--RRGAQLPEDHDVREALVQSLDWPLQEALRNHAPLSLELPSGQ 715 Query: 714 RIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWK 773 + + + P ++ R Q +G +P IA GRVP+ +ELLSP +P T+DL+ FW Sbjct: 716 SARVDWLDPRAPLVSARAQAFYGLTEHPKIAAGRVPVTVELLSPGMKPAATTQDLARFWG 775 Query: 774 GAYREVQKEMKGRYPKHVWPDDPANTAPT-RRTKKY 808 Y+++ K+M+GRYPKH WPDDPAN RTKK Sbjct: 776 AGYKDMAKDMRGRYPKHDWPDDPANARAHEGRTKKR 811 >UniRef50_B0JZ95 Dhx16 protein n=5 Tax=Fungi/Metazoa group RepID=B0JZ95_XENTR Length = 1016 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 177/627 (28%), Positives = 282/627 (44%), Gaps = 62/627 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV +LL A+ +++ TG+GK+T +P L H KI +PRR+A Sbjct: 373 SLPVFPYRSDLLQAISDHQILIIEGETGSGKTTQIPQYLHEHGYTKNGLKIGCTQPRRVA 432 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V+ R+++ + K G+ VGY +R ++C T L+ +T+G+L R +P+L+ ++ Sbjct: 433 AMSVSARVSQEMGVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVI 492 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ L+ D+ + R DLK+L+ SATL+ +R +APV GR Sbjct: 493 IIDEAHERTLHTDVLFGLIKDIAR-FRQDLKVLVASATLNTERFSSFFDDAPVFRIPGRR 551 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 +PV+ Y P + V + Q G +L+FL G EI+ E L R Sbjct: 552 YPVDIYYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIETCCEMLQERCRRLG 611 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++L+ P+Y L + Q K P P G RKVV+ATNIAETSLTI+GI V+D + Sbjct: 612 SKIAEMLVLPIYANLPSDMQAKIFEPTPPGARKVVIATNIAETSLTIDGIIYVIDPGFCK 671 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 ++ R+G+ LI S+AS QRAGRAGR+ G L + + PEI Sbjct: 672 QKSYNARSGMESLIVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYKNEMEDTTVPEIQ 731 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 +++L +++ L G +D ++D PP L+ A L LGAL L+ G++MA Sbjct: 732 RTNLGNVVLLLKSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMA 791 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRSQ 470 L DP L+ ++++++ + IAA+L D V + + Sbjct: 792 ELPVDPMLSKIILASEQYGCSEQILTIAAMLSVNNTIFYRPKDKLVHADTARANFTVPGG 851 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG------------- 517 + LNV +S F + RR +D R QL MG Sbjct: 852 DHMVLLNVYTQWVESGHSLQWCYENFIQARSLRRARDVREQLEGLMGRIEIELTSCEGDS 911 Query: 518 -------------------------------AMLDANDALS--RHEWLIAPLLLQGSASP 544 + N +L + W+I L+ + Sbjct: 912 IPVRKAITAGYFYHTARLTRSGYKTVKQQQAVYIHPNSSLHEEQPRWVIYHELVFTTKE- 970 Query: 545 DARILLALLVDIDELVQRCPQLVQQSD 571 + + +D L++ P + + Sbjct: 971 --YMRQIIEIDSTWLLEVAPHYYKSRE 995 >UniRef50_Q1N0P2 ATP-dependent helicase HrpA n=1 Tax=Bermanella marisrubri RepID=Q1N0P2_9GAMM Length = 1298 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 191/800 (23%), Positives = 345/800 (43%), Gaps = 86/800 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 LP+ E+ + V+++ TG+GK+T LP + GKI +PRRLAA Sbjct: 72 QLPINQKKQEIAETIANNQVVVIAGETGSGKTTQLPKICMELGLAKYGKIAHTQPRRLAA 131 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+A+ N G+ VGY++R + ++ L+++T+G+L Q D L+ ++I Sbjct: 132 RSVADRIAQECNVPLGEQVGYQVRFTDQSKDSSLLKLMTDGILLAETQNDRFLNQYQVII 191 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D R + APV+ GR++ Sbjct: 192 IDEAHERSLNIDFLLGYLKQLLPK-RPDLKVVITSATIDLQRFSEHFDNAPVIEVSGRTY 250 Query: 182 PVERRYLPLPAHQRFDDA-------VAVATAEMLRQES-----GSLLLFLPGVGEIQRVQ 229 PVE RY P+ D+ + A E+ R+++ G +L+FL G EI+ Sbjct: 251 PVEVRYRPIVDVDTDDEQEGDMYQGIIDAVDELEREDAKRGQIGDVLVFLSGEREIREAS 310 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 L + PLY L+ ++Q++ P G R++VL+TN+AETSLT+ GIR VVD Sbjct: 311 LALKKANLKQTEILPLYARLNSSEQQRIFKPT-GGKRRIVLSTNVAETSLTVPGIRYVVD 369 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 RV+R+ R+ + RL + +SQAS QR GR GR+ GI + L ++E S+ Sbjct: 370 TGVARVSRYSYRSKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFLSRPEFSD 429 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PEI +++L+ +++++L D ++D P + LL+ L A++ + ++ G Sbjct: 430 PEIQRTNLAAVILQMLSLRLGDVNAFPFVDAPDNRFIKDGYNLLKELSAVDKKNNITRIG 489 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQ 467 ++++ DPR+A +L+ A A A IA+ L + PR + + ++ Sbjct: 490 RQLSRFPVDPRIARVLIEANAKHALAEALIIASALSIQDPRERPVEKQQQADQKHAEFRD 549 Query: 468 RSQQLLKRLNVRG------GEADSSLIAPLLAGAFADRIARRRGQDGRYQL--------- 512 + +N+ ++ + + F + + R +D YQL Sbjct: 550 DESDFITLINIWNWYEEQRQALSNNQLRQICKKHFLNYMRMREWRDVHYQLRILCKELKF 609 Query: 513 -----------------------------------ANGMGAMLDANDAL--SRHEWLIAP 535 A +L + R +W+++ Sbjct: 610 VENKEVSSYDQLHKCILSGYLSHIGQKSDENDYKGARNRRFLLFPGSGIFKKRPKWVVSA 669 Query: 536 LLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD-TVEWDDAQGTLKAWRRLQIGQLT 594 L++ S + + + L LV+++ W +G + A+ ++ + L Sbjct: 670 ELVETSKLYG---RMNATIQPEWLEPLAKNLVKKTYLEPHWSIKRGQVMAYEQVSLFGLI 726 Query: 595 VKVQP---LAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 + + A+ H+ + +G + ++ + L + D Sbjct: 727 IIPRRRIGYAQIDPVVSHEIFIREALVQGQIKTQGDFLEYNQALMEEVAELEDKSRRRDI 786 Query: 650 PAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQR----LDSELPA 705 +D+E L + + S + + L + MQ +++ P Sbjct: 787 V-IDEERLFQFYFERVPDDIADTASFEKWRKKNGDDTLLIEKSYLMQHAASDVTEAQFPD 845 Query: 706 HYTVPTGSRI-AIRYHEDNP 724 H++ GS I + Y + Sbjct: 846 HFS--HGSVIYPLSYRFEPG 863 >UniRef50_C0SAG2 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 n=2 Tax=Eukaryota RepID=C0SAG2_PARBP Length = 1093 Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 183/631 (29%), Positives = 283/631 (44%), Gaps = 66/631 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLP+ E++ A+ +++ TG+GK+T +P L G KI +PRR+A Sbjct: 444 SLPIYRFREEIIQAVADHQIIIIVGETGSGKTTQIPQYLHEAGYTKGGMKIGCTQPRRVA 503 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+AE + K G+ VGY +R ++ T L+ +T+G+L R + +P+L ++ Sbjct: 504 AMSVAARVAEEMGVKVGNEVGYAIRFEDATSDKTVLKYMTDGMLLRELLTEPDLGAYSVL 563 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER++ D+A LL D+ + R DLKLLI SAT+D + Q+ +AP+ GR Sbjct: 564 MIDEAHERTVSTDIACGLLKDIAKA-RPDLKLLISSATIDAQKFQKYFDDAPIFNIPGRR 622 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--- 237 +PV+ Y P A+ + Q G +L+FL G EI+ ++ + Sbjct: 623 YPVDIHYTLQPEANYLAAAITTVFHIHISQGKGDILVFLTGQEEIEAAEQSIQETARKLG 682 Query: 238 ---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++CP+Y L Q K P P G RKVVLATNIAETSLTI+GI V+D + Sbjct: 683 SKIPELIICPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIVYVIDPGFVK 742 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEPEIL 353 F+PRTG+ L+ S+AS QRAGRAGR+ PG L K + PEI Sbjct: 743 ENVFNPRTGMESLVVTPCSRASAGQRAGRAGRVGPGKCFRLYTKWAYYNELEENTTPEIQ 802 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMA 412 +++L+G+++ L G ++D PP L+ A L LGAL + L+ G++MA Sbjct: 803 RTNLNGVVLMLKSLGIDQLLDFDFMDPPPAETLIRALEQLYALGALNDHGDLTKVGRQMA 862 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRS- 469 DP LA +++A I A+L E D + + + + Sbjct: 863 EFPTDPMLAKAILAADKYGCVEEVLSIIAMLGEASSLFFRPKDKKIHADSARARFTIKDG 922 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA---------------- 513 LNV DS F + + R +D R QLA Sbjct: 923 GDHFSLLNVWNQWVDSDFSYVWARENFLQQRSLTRARDVRDQLAKLCDRVEVTITSSGSS 982 Query: 514 -------------------------------NGMGAMLDANDALS--RHEWLIAPLLLQG 540 NG L + L +W+I L+ Sbjct: 983 NLVPIQKAITAGFFPNAARLQRGGDSYRTVKNGQTVYLHPSSTLFEVNPKWVIYYELVLT 1042 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSD 571 S + + + + LV+ P ++ D Sbjct: 1043 SKE---YMRSNMPLQPEWLVEVAPHYHKKKD 1070 >UniRef50_Q65SL6 HrpA protein n=9 Tax=Pasteurellaceae RepID=Q65SL6_MANSM Length = 1337 Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 194/834 (23%), Positives = 344/834 (41%), Gaps = 121/834 (14%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 +LPV+ E+ + V+++ TG+GK+T LP L G G I +PRR+AA Sbjct: 83 NLPVSQRKTEIQKLIAQNQVVIVAGETGSGKTTQLPKMCLELGFGQKGLIGHTQPRRIAA 142 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE + + G VGY++R + +G +T+++++T+G+L IQ D L+ +I Sbjct: 143 RSVAARIAEEMQTELGGIVGYKVRFNDQIGEDTQIKLMTDGILLAEIQTDRFLNRYDCLI 202 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R + AP++ GR++ Sbjct: 203 IDEAHERSLNNDFILGYLKQLLP-RRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTY 261 Query: 182 PVERRYLP--LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE RY P Q + A E+ + G +L+FL G EI+ E L + Sbjct: 262 PVEVRYRPVAETEEQDQLQGILNAVDELQAEGRGDILIFLSGEREIRDTAEALEKQNLRH 321 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + PLY LS +Q K P G+ ++VLATN+AETSLT+ GI+ V+D R++R+ Sbjct: 322 TEILPLYARLSAQEQNKIF--HPGGLNRIVLATNVAETSLTVPGIKYVIDPGTARISRYS 379 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 RT + RL + +SQAS QR GR GR+ G+ + L +++ ++PEIL+++L+ Sbjct: 380 YRTKVQRLPIEPISQASANQRKGRCGRVSEGVCIRLYSEQDFNNRPEFTDPEILRTNLAS 439 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER---------------- 403 +++++ G D ++D P ++ +LL+ LGA E ++ Sbjct: 440 VILQMTALGLDDIEAFPFVDAPDKRHIQDGIKLLEELGAFEWQKSPPSAFGTSPRKRGEG 499 Query: 404 -------------------------LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAK 438 L+ G+++A L DPRLA ML+SA + Sbjct: 500 NLASNSSLPPFTGGAGHSPEGGKRVLTQTGRQLAQLPVDPRLAKMLLSAVDLGCVLEVMI 559 Query: 439 IAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG----------------- 480 I A L + PR + + + + L LN+ Sbjct: 560 IVAALSIQDPRERPQEKQQSADDKHRRFADKKSDFLAFLNLWNYIQEQQKVLSKNQFRRL 619 Query: 481 ----------------------------------GEADSSLIAPLLAGAFADRIARRRGQ 506 A I L I + + Sbjct: 620 CQKDYLNYLRVREWQDIYHQIRLTVREMGLPINSEPAQYPQIHSALLSGLLSHIGMKEAE 679 Query: 507 DGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 +Y A + N L + +W++A L++ S + +D + + Sbjct: 680 KQQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSKLWG---RMVAEIDPEWVEPLAK 736 Query: 565 QLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV-KVQPL--AKPSEDELHQAMLNGIRDKG 620 L++ S W ++G + A ++ + + + +P+ + + +G Sbjct: 737 HLIKSSYSEPRWSKSRGQVIANEKVSLYGVPIVASRPVNYGAIDPQTSREIFIQSALVEG 796 Query: 621 L--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 + + E ++L + D VDD +L ++ + + Sbjct: 797 DWHTRHKFFFENQKLIREVEDLEHKSRRRDIL-VDDRTLFEFYDSRIGADVVSQKHFDSW 855 Query: 679 ------KSLDIYQALRGLLDWGMQQRLDSE-LPAHYTVPTGS-RIAIRYHEDNP 724 + ++ + L Q++ P + G+ ++ + Y + Sbjct: 856 WKKAAQQDPELLNFEKSFLMKEDAQKVSQLDFPNFW--HQGNLKLKLTYQFEPG 907 >UniRef50_B6ADS3 DHX8/prp22-type ATP-dependent RNA helicase, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6ADS3_9CRYT Length = 1078 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 168/638 (26%), Positives = 273/638 (42%), Gaps = 63/638 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 +LP+ A+ L+ A+ +++ TG+GK+T + L + I +PRR+A Sbjct: 422 NLPIFALRESLVDAVRKNQIIVVIGETGSGKTTQITQYLYEEGFCDDGNMIGCTQPRRVA 481 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A+ + G TVG+ +R ++ TR++ +T+G+L R D LS ++ Sbjct: 482 ATSVARRVAQEVGCTIGSTVGFSIRFEDVTSSETRIKYMTDGMLLREALSDHSLSKYNVI 541 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL R +L++ SATL+ D+ + + GR+ Sbjct: 542 MLDEAHERTITTDVLFGLLKATCIE-RPSFRLIVTSATLEADKFSRYFMNCNIFAIPGRT 600 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---- 236 FPVE Y P + A+ LR+ G +L+FL G EI L R+ Sbjct: 601 FPVEILYTREPESDYVEAALLTVLQIHLREPPGDILVFLTGQEEIDNACRTLHERMQKLE 660 Query: 237 ---GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 +++ P+Y + Q P P+G RK V+ATNIAE SLTI+GI V+D Sbjct: 661 NLNPPPLIILPVYSSQPSEVQSLIFEPTPEGCRKCVIATNIAEASLTIDGIYFVIDPGFA 720 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEPEI 352 ++ F+ +TG+ L+ +SQAS QR+GRAGR PG L + + + PEI Sbjct: 721 KMMVFNSKTGMDSLVVAPISQASARQRSGRAGRTGPGKCYRLYTEIAFKTEMLPVTIPEI 780 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKM 411 +++LS ++ L G +D ++D PP LL A L L AL+ L+ G+KM Sbjct: 781 QRTNLSNTVLLLKALGINDLLNFDFMDPPPPHTLLIALETLYELDALDDNGILTRLGRKM 840 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQ 470 A L P L+ M++S+ + + I ++L D A R++ + Sbjct: 841 AELPMSPNLSKMVLSSVDLGCSDEIITITSMLSVQNVFYRPKDKQAAADRHKSKFHHSYG 900 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ------------------- 511 L LN+ P F + ++ QD R Q Sbjct: 901 DHLTYLNIYNSWQRQRYSVPWCYENFLQSRSLKKAQDVRKQLISIFDKYQLNIISARNDY 960 Query: 512 --------------------------LANGMGAMLDANDAL--SRHEWLIAPLLLQGSAS 543 L + L + L EWL+ L+ + Sbjct: 961 DKIRKAICAGFFSHACKKDSQEGYRSLVDNQQVYLHPSSTLFNKSPEWLLYHELVFTTKE 1020 Query: 544 PDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 I + + LV+ P L Q +D + + Sbjct: 1021 ---YIRDCCTIQPNWLVELAPNLFQFADEAKISKRKMR 1055 >UniRef50_B7VPK9 ATP-dependent helicase n=201 Tax=Bacteria RepID=B7VPK9_VIBSL Length = 1355 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 192/809 (23%), Positives = 342/809 (42%), Gaps = 96/809 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LPV+ ++ A+ V+++ TG+GK+T LP G G I +PRRLAAR Sbjct: 125 LPVSQKRDDIAKAIAENQVVIVAGETGSGKTTQLPKICSELGRGRFGLIGHTQPRRLAAR 184 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+AE + + G+ VGY++R + + NT+++++T+G+L IQ D LS +I+ Sbjct: 185 SVANRIAEEMETQLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFLSQYDTIII 244 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D + L ++ R DLK++I SAT+D +R + AP++ GR++P Sbjct: 245 DEAHERSLNIDFIMGYLRELLPK-RPDLKVIITSATIDPERFSKHFNNAPIIEVSGRTYP 303 Query: 183 VERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 V+ RY PL + + A E+ + G +L+F+ G EI+ + L+ R Sbjct: 304 VDTRYRPLGGDDSDSDRDQIEGIFEAVDELCDEGQGDILIFMNGEREIRDTADSLSKRNL 363 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 D + PLY LS +Q + R++VLATN+AETSLT+ GI+ V+D R++R Sbjct: 364 RDTEIVPLYARLSAGEQNRIFQSHTG--RRIVLATNVAETSLTVPGIKYVIDPGTARISR 421 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + RT + RL + VSQAS QR GR GR+ GI + L ++E E ++PEIL+++L Sbjct: 422 YSYRTKVQRLPIEPVSQASANQRKGRCGRVAEGICIRLYSEEDFESRPEFTDPEILRTNL 481 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL---------------EGE 402 + +++++ G D +++ P N+ RLL+ LGA+ + + Sbjct: 482 ASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLLEELGAIAIVEPSANKNKNHGDDKK 541 Query: 403 RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRN 461 +L+A G+K+A L DPRLA M++ A ++ IA+ L + PR SD + Sbjct: 542 KLTAIGRKLAKLPIDPRLARMVIEAPSNRCLHEVMVIASALSIQDPRERPSDKQQSSDDK 601 Query: 462 QPAWQQRSQQLLKRLNVR------------------------------------------ 479 + + + +N+ Sbjct: 602 HKRFFDKESDFITFVNLWDYVKQQQKALSSNQFRKQCKQDYLNYLRIREWQDVYFQIHQA 661 Query: 480 ---------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDAL--SR 528 I L I + + YQ A + L + Sbjct: 662 MRELDTKLNTEPGSYDGIHMSLLSGLLSHIGMKDQEKNEYQGARNARFHIFPASGLFKKQ 721 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRR 587 +W+++ L++ S I + + + L+++S W Q + A + Sbjct: 722 PKWIMSAELVETSKLWGRVI---AKIQPEWIEPLAKHLIKRSYSEPHWSKKQAAVMAHEK 778 Query: 588 LQIGQLTVKVQPL---AKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRLLCAAK 642 + + + + + L + + +G + + + +L + Sbjct: 779 VMLYGIPIIPKRLVNYGAIDATVSRELFVRSALVEGEWETKHAFFKQNRKLLQEVEELEH 838 Query: 643 WLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL------KSLDIYQALRGLLDWGMQ 696 D +DD+ L + + K+ ++ + +L G Sbjct: 839 KSRRRDIL-IDDDELFDFYDQRVGEEAVSGRHFDTWWKKTSQKTPELLNFEKSMLFRGDA 897 Query: 697 QRLDSE-LPAHYTVPTGSRIAIRYHEDNP 724 + P + G ++ + Y + Sbjct: 898 SHVTDLDYPNFWH-QNGIKLKLSYQFEPG 925 >UniRef50_A1U107 ATP-dependent helicase HrpA n=4 Tax=Gammaproteobacteria RepID=A1U107_MARAV Length = 1312 Score = 731 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 204/805 (25%), Positives = 347/805 (43%), Gaps = 95/805 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV+ + ++ A++ V+++ TG+GK+T +P L GI G I +PRR+A Sbjct: 85 AGLPVSDRVEDISDAINNHQVVIIAGETGSGKTTQIPKICLNLGRGIRGIIGHTQPRRIA 144 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+V+ R+AE L E G +GY++R + ++R++V+T+G+L +Q D L + Sbjct: 145 ARSVSSRIAEELGETVGQQIGYQVRFTDNTSESSRVKVMTDGILLAEVQHDRFLDRYDTL 204 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT++ +R + EAPV+ GR+ Sbjct: 205 IIDEAHERSLNIDFLLGYLKQLLPK-RPDLKVIITSATIEVERFSEFFNEAPVIEVSGRT 263 Query: 181 FPVERRYLP-----LPAHQRFDDAVAVATAEMLR------QESGSLLLFLPGVGEIQRVQ 229 FPV+ RY P Q + D V A E+ + Q G +L+FLPG EI+ + Sbjct: 264 FPVDIRYRPLVGDEDDRDQGWTDGVLSALDEIEQHERQEKQPPGDVLVFLPGEREIRALS 323 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 + L + PLY LS +Q + R++VL+TN+AETSLT+ GIR V+D Sbjct: 324 KVLRHADLRHTEVLPLYSRLSNQEQNRVFQGHKG--RRIVLSTNVAETSLTVPGIRYVID 381 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++R+ R+ + RL + +SQAS QRAGR GR+ PGI L + ++ Sbjct: 382 TGVARISRYSVRSKIQRLPIEPISQASANQRAGRCGRVAPGICFRLYDETDFLNRPEYTD 441 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQG 408 PEIL+++L+ +++++ G + +L+ P + +LL+ L A++ + R++ G Sbjct: 442 PEILRTNLASVILQMATSGLGEIRHFPFLEAPDRRQVNDGYKLLEELSAVDDKRRVTRLG 501 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQ 467 + MA L DPRLA MLV++ A + A L + PR D A + + Sbjct: 502 RTMARLPLDPRLARMLVTSAEQGSLAEVLIVIAGLSVQDPRERPQDKQQAADQAHAPFND 561 Query: 468 RSQQLLKRLNVRG------GEADSSLIAPLLAGAFADRIARRRGQDGRYQL--------- 512 + LN+ E + + L F + R +D QL Sbjct: 562 KESDFATLLNIWNWFEEQRQELSQNQLKKLCQKTFLSWMRMREWRDIHRQLTLICREQKL 621 Query: 513 -----------------------------------ANGMGAMLDANDALSR--HEWLIAP 535 M+ + + +W++A Sbjct: 622 TLNSQPANYDAVHKAILGGLLGQVAVKVEKREYLATRNRKVMIFPGSKVGKTAPKWIVAA 681 Query: 536 LLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQL- 593 +++ S + + + + +V+ W+ + + + ++ + L Sbjct: 682 EIVETSK---VFARMVAAIQPEWVEPLAGHVVKHHYFEPHWEQKRAQVMGYEKVTLYGLD 738 Query: 594 --TVKVQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 + P AK E + +G S + A ++ + K D Sbjct: 739 VVPKRRIPYAKVDPAECRNLFIRRALVEGDFQSRAPFIARNREMLDTVENLEKKTRRRDL 798 Query: 650 PAVDDESLLAALETWLLPHMTGVH---------SLRGLKSLDI--YQALRGLLDWGMQQR 698 VDDE L+A + L + S LK L++ L+ LD Q+ Sbjct: 799 L-VDDEVLVAFYDQRLPSDIVSGRHFESWWKGLSAEELKKLELTETDVLQRPLDETSAQQ 857 Query: 699 LDSELPAHYTVPTGSRIAIRYHEDN 723 P + G + + Y + Sbjct: 858 ----YPDYLEW-EGVKYPLSYEFEP 877 >UniRef50_O22899 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase n=8 Tax=Eukaryota RepID=DHX15_ARATH Length = 729 Score = 731 bits (1887), Expect = 0.0, Method: Composition-based stats. Identities = 169/651 (25%), Positives = 283/651 (43%), Gaps = 77/651 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-------HPGINGKIILLE 55 LPV + L L+ ++L TG+GK+T +P +L G + + Sbjct: 64 DLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQ 123 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRR+AA +V++R+A+ ++ G+ VGY +R ++C T L+ +T+G+L R DP L Sbjct: 124 PRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLE 183 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVI 175 ++ILDE HER+L D+ LL +V + R DLKL++MSATL+ ++ Q+ AP++ Sbjct: 184 RYKVIILDEAHERTLATDVLFGLLKEVLRN-RPDLKLVVMSATLEAEKFQEYFSGAPLMK 242 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GR PVE Y P + A+ + + G +L+FL G EI+ ++ Sbjct: 243 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKE 302 Query: 236 IGS------DVLLCPLYGALSLNDQRKAILPAP-------QGMRKVVLATNIAETSLTIE 282 + + V + PLY L Q+K PAP RK+V++TNIAETSLTI+ Sbjct: 303 VSNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTID 362 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GI V+D + ++PR + L+ +S+AS QR+GRAGR PG L ++ Sbjct: 363 GIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFN 422 Query: 343 R-AAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG 401 Q+ PEIL+S+L+ ++ L + G D ++D P L+ A +L LGAL+ Sbjct: 423 NDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDD 482 Query: 402 -ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFS 459 L+ G+ M+ DP+++ ML+ + + + ++A+L P + + A Sbjct: 483 EGNLTKTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAAD 542 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG-- 517 + + L LNV ++ F + A + + R QL M Sbjct: 543 EAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMSRF 602 Query: 518 -----------------------------------------------AMLDANDAL-SRH 529 L ++ L + Sbjct: 603 NLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKP 662 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQG 580 EW+I + + + I + + LV S+ + + Sbjct: 663 EWVIYNEYVLTTRN---FIRTVTDIRGEWLVDVAQHYYDLSNFPNCEAKRA 710 >UniRef50_P24384 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 n=10 Tax=Saccharomycetaceae RepID=PRP22_YEAST Length = 1145 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 168/638 (26%), Positives = 286/638 (44%), Gaps = 61/638 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 +LPV A+ EL+ A+ +++ TG+GK+T + L N G I +PRR+AA Sbjct: 482 TLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFSNYGMIGCTQPRRVAA 541 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE + K G VGY +R ++ GP+TR++ +T+G+L R DPE+S +++ Sbjct: 542 VSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPDTRIKYMTDGMLQREALLDPEMSKYSVIM 601 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ ALL R +LK+++ SATL++ + + P++ G++F Sbjct: 602 LDEAHERTVATDVLFALLKKAAIK-RPELKVIVTSATLNSAKFSEYFLNCPIINIPGKTF 660 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 PVE Y P + A+ + + G +L+FL G EI E L R+ + Sbjct: 661 PVEVLYSQTPQMDYIEAALDCVIDIHINEGPGDILVFLTGQEEIDSCCEILYDRVKTLGD 720 Query: 239 ---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++L+ P+Y AL Q K P P+G RKVV ATNIAETS+TI+GI VVD ++ Sbjct: 721 SIGELLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKI 780 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEPEILQ 354 ++ R G+ +LI +SQA QR GRAGR PG L + + PEI + Sbjct: 781 NIYNARAGIEQLIVSPISQAQANQRKGRAGRTGPGKCYRLYTESAFYNEMLENTVPEIQR 840 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 +LS ++ L G +D + ++D PP +L A L L +L+ +L+ G++M+ Sbjct: 841 QNLSHTILMLKAMGINDLLKFDFMDPPPKNLMLNALTELYHLQSLDDEGKLTNLGKEMSL 900 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 DP L+ L+S+ ++ + I ++L D + + + Sbjct: 901 FPMDPTLSRSLLSSVDNQCSDEIVTIISMLSVQNVFYRPKDRQLEADSKKAKFHHPYGDH 960 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA------------------- 513 L LNV ++ F +R +D + Q++ Sbjct: 961 LTLLNVYTRWQQANYSEQYCKTNFLHFRHLKRARDVKSQISMIFKKIGLKLISCHSDPDL 1020 Query: 514 --------------------------NGMGAMLDANDALSRH--EWLIAPLLLQGSASPD 545 G + + +L E+++ ++ S Sbjct: 1021 IRKTFVSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSRE-- 1078 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583 + ++ L++ P + D + + Sbjct: 1079 -YMSQVTSIEPQWLLEVAPHFYKAGDAESQSRKKAKII 1115 >UniRef50_A6W7E3 ATP-dependent helicase HrpB n=4 Tax=Actinomycetales RepID=A6W7E3_KINRD Length = 836 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 317/835 (37%), Positives = 423/835 (50%), Gaps = 38/835 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV +LPELL AL +L AP G GK+T +PL L G++++ EPRR+A Sbjct: 13 LEGLPVVEILPELLAALRPHGTAVLQAPPGTGKTTLVPLALADAR--PGRVVVAEPRRVA 70 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 R A R+A LL E G +VGY +R + V TR+EVVT G+L R + RDPEL GV V Sbjct: 71 TRAAAARMAALLGEPVGASVGYAVRGERRVSAGTRVEVVTTGLLLRRMLRDPELPGVATV 130 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER L ADLALA L ++ LR+DL L+ SATLD RL +L PVV + Sbjct: 131 LLDEVHERQLDADLALAFALQSRELLREDLWLVAASATLDVPRLAGLLGG-PVVTATAPV 189 Query: 181 FPVERRYLPL----------PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 P+E + P D V L + G +L FLPG GEI+ V + Sbjct: 190 HPLEVLWCPPPRPVRPPEGLRVDPALLDHVGALVGRALAERPGDVLTFLPGAGEIRSVGD 249 Query: 231 QLA-SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +L S +DV L L+G S +Q A+ P R+VVLA+ +AE+SLT+ G+R VVD Sbjct: 250 RLRRSASAADVDLVELHGRRSGAEQDAALR--PGARRRVVLASAVAESSLTVPGVRTVVD 307 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 RV R D G L T RVS+AS QRAGRA R PG L + + + Sbjct: 308 AGLSRVPRLDHARGFGGLDTVRVSRASADQRAGRAAREAPGTVLRAWSAAEHGLLLPHTP 367 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQ 409 PEI +DL+G + WG +D + LD PP L AA+ L LGAL G ++ G+ Sbjct: 368 PEIATADLTGFALLSAGWGEAD--SLPLLDAPPPGPLAAAREALHRLGALAGGAVTPLGR 425 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD-LGVAFSRNQPAWQQR 468 +MA +G PRLA L+ TAA++ A+L E + D L A+ Sbjct: 426 RMAEVGLHPRLARALLEGAERVGPRTAAEVVALLSEDGLLRGGDDLVAAWRSAAATGDPT 485 Query: 469 SQQLLKRLN-------------VRGGEADSSLIAPLLAGAFADRIARRRGQDGR-YQLAN 514 ++ + RL ++A A +R+ARRRG +G Y Sbjct: 486 WRREVARLRSSLGGGTGAGGGGGDAQLPRDLAAGTVVALAHPERVARRRGGEGSAYATTG 545 Query: 515 GMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 G G L L WL + + R+ A + D V+ D V Sbjct: 546 GAGVELAPASGLRGATWLAVAVADRAPGRAAGRVRSAAPLTEDLARSLVG--VEVRDEVR 603 Query: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLR 634 W G + A R +G + + V+PL P D + A+ GIR +GL VL+ A A LR Sbjct: 604 W--RDGDVAARRVEAVGAVELSVRPLPHPPADLVAAAVAEGIRREGLGVLSLGAAAASLR 661 Query: 635 LRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWG 694 R+ C L + WP + DE LLA L WL + GV S R L +D+ ALR LL W Sbjct: 662 ARVACCRAALGD-PWPDLGDEQLLATLPRWLGAQLAGVRSRRDLSRIDVLAALRALLPWP 720 Query: 695 MQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLEL 754 RLD P VPTG + + Y + P LA+++QE FG P + +GRVP+VL L Sbjct: 721 QAGRLDELAPVDLPVPTGRSVRVDYADPAAPVLALKLQEAFGWRATPRLVEGRVPVVLHL 780 Query: 755 LSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 LSPA RPL +T DL FW+GAY V+ EM+GRYP+H WP+DP PT RT + S Sbjct: 781 LSPAGRPLAVTADLESFWRGAYPAVRGEMRGRYPRHPWPEDPLTAVPTARTARRS 835 >UniRef50_A7AWE8 RNA helicase, putative n=2 Tax=Piroplasmida RepID=A7AWE8_BABBO Length = 1156 Score = 728 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 178/635 (28%), Positives = 288/635 (45%), Gaps = 67/635 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK------IILLEP 56 SLP+ A+ ELL A+ +++ TG+GKST +P L +G I +P Sbjct: 498 SLPIFALRDELLQAVQENDILIVVGETGSGKSTQIPQYLAESGYTSGSDGESMVIGCTQP 557 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RR+AA +VA+R++E + + G VGY +R ++C +T ++ +T+G+L R + +DP L Sbjct: 558 RRVAAMSVAKRVSEEVGCRLGQEVGYCIRFEDCTTKDTVIKFMTDGMLLREVLQDPLLEQ 617 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS 176 ++LDE HER++ D+ ALL + R++ KL++ SATL+ ++ +A + Sbjct: 618 YACIMLDEAHERTIATDVLFALLKNCCSK-RENFKLIVTSATLEAEKFSTYFNDASIFSI 676 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 GR FPVE + + ++ L + +G +LLFL G EI L R+ Sbjct: 677 PGRMFPVEILHTTDQESDYMEASLITVLNIHLNEPAGDILLFLTGQEEIDVACRTLHERM 736 Query: 237 -------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +++ P+Y AL Q P P G RK V+ATNIAE SLTI+GI V+D Sbjct: 737 KRLESMSPPPLIILPVYAALPGEMQGAIFEPTPPGCRKCVIATNIAEASLTIDGIFYVID 796 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQS 348 +V R++PRTG+ L+ +SQAS QRAGRAGR PG L ++ + Sbjct: 797 PGFAKVKRYNPRTGMESLVVVPISQASAKQRAGRAGRTGPGKCYRLYTEDAYRSEMLPTA 856 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQ 407 PEI +++L+ +++ L G +D ++D+PPV L+ A L LGAL+ L+ Sbjct: 857 VPEIQRTNLANVVILLKAMGINDFLNFDFMDKPPVETLIDALDNLYHLGALDDEGLLTRL 916 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQ 466 G+KMA DP LA ML+++ + + + I ++L D R + + Sbjct: 917 GRKMAEFPMDPNLAKMLLTSVDLECSDEVITIVSMLSIQNIFYRPQDKQAEADRAKSRFT 976 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM---------- 516 Q L L V + + F A R QD R QL + M Sbjct: 977 QAEGDHLTLLYVYNQWRKNKFSSVWCHENFLQSRALLRAQDVRKQLISIMDRYRFKVVSC 1036 Query: 517 -----------------------------------GAMLDANDAL--SRHEWLIAPLLLQ 539 + + AL E+++ L+ Sbjct: 1037 GNNAEVISKSVCAGYFHHSARRDPQEGYRTIVDQQNVFIHPSSALYNRSPEYVVYHELVM 1096 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 + + +V L++ P + ++S+ V Sbjct: 1097 TTKE---YMRDLTIVKAQWLLELAPSMFKRSEGVS 1128 >UniRef50_Q3AZY8 ATP-dependent helicase HrpB n=7 Tax=Chroococcales RepID=Q3AZY8_SYNS9 Length = 834 Score = 727 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 316/833 (37%), Positives = 452/833 (54%), Gaps = 31/833 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-------AHPGINGKIIL 53 M P+ +LP + + +LL AP GAGK+T +PL L+ A G++++ Sbjct: 1 MKDFPIDPLLPTICQQIKPGSTLLLQAPPGAGKTTRVPLALIGALTPIAAEITRAGRVLM 60 Query: 54 LEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPE 113 +EPRRLA R A RLA+ L+E G +GY MR + T++EVVT+G+ R +Q DP Sbjct: 61 VEPRRLATRAAATRLAQSLDEPLGQRIGYAMRGEQKRSTKTQVEVVTDGLFLRRLQADPS 120 Query: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPV 173 L GV V+ DEFHER ADLALALL + LR DL L++MSATLD L+ LP+A V Sbjct: 121 LEGVSCVLFDEFHERRKDADLALALLREAAPVLRPDLALVLMSATLDLSDLRDRLPQADV 180 Query: 174 VISEGRSFPVERRYLPLPAHQRFDDAVAVATAEM---LRQESGSLLLFLPGVGEIQRVQE 230 + S GR +PVE + ++ V A L + SG+ L+FLPG+ EI+R + Sbjct: 181 LESAGRCYPVETHHQRARENESLPRQVLRALENHALTLSKGSGA-LVFLPGLREIERCRT 239 Query: 231 QLAS-RIGSDVLLCPLYGALSLNDQRKAILPA-PQGMRKVVLATNIAETSLTIEGIRLVV 288 L+ + + L+G L L+ Q A+ P+ V+LA+ IAE+S+TI+ +RLV+ Sbjct: 240 LLSDAKALQRWRIAILHGQLPLDSQSAALHRCGPEHDGTVILASGIAESSITIDAVRLVI 299 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D R R+DP TG+ L T S AS QR GRAGR G + L + + +R S Sbjct: 300 DSGLSRQLRYDPNTGMEGLETVPSSLASAEQRRGRAGRQSAGQCVRLWSPAEQQRRPNFS 359 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQ 407 PE+L +D +LMEL QWG + WLD PP + LQ LG L+ +LS+ Sbjct: 360 PPELLLADPQPILMELAQWGAGLGKDLPWLDAPPQAAMQEGLSDLQALGLLQPNGQLSSM 419 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRN------ 461 G++++ LG PRL +++ A+ + +A +L E + D G Sbjct: 420 GRQLSTLGVHPRLGLLMLEAREHGCSQLGCDLAVLLSERDPLAGRDAGCDLEARLSVIGQ 479 Query: 462 QPAWQQRSQQLLKRLNVRG----GEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGM 516 + RS+QL ++L+ G + DS+ A L+ AF +A+ R GQ GRY L G Sbjct: 480 HRTLRVRSRQLRRQLDRLGVTAPEKTDSANAAALVLRAFPQWLAQERPGQPGRYLLRQGR 539 Query: 517 GAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWD 576 GA+L D L L + + D I LAL +D L + + ++V WD Sbjct: 540 GAILPPLDQLRGSPALAVARVD--TGGRDTLIQLALPLDSSTLEELGEREGTWVESVSWD 597 Query: 577 DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKG-LSVLNWTAEAEQLRL 635 ++ +KA RRLQ+G+L ++ P + PS ++ +LN + + G L L WTA +QLR Sbjct: 598 ASRQQVKAERRLQLGELVLRRTPQSAPSPEQCQALLLNALHEAGTLEALPWTAFNQQLRQ 657 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGM 695 RL + WP D E+LL TWL P + S R L + +AL G L W Sbjct: 658 RLSWMHRHDG-PPWPPRDKETLLQD-TTWLAPTLLSCQSWRDLSPAMLDEALWGALSWTE 715 Query: 696 QQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755 +QRLD LP +P+G + +RY ++ LAV++QEMFGE T P + +G++P+ LELL Sbjct: 716 RQRLDQVLPERIAIPSGRQAKLRYDDEE-VVLAVKLQEMFGETTGPHVLRGQIPVTLELL 774 Query: 756 SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 SPA RPLQ TRDL FW G+Y +V++EM+GRYPKH WPDDP PT TK+ Sbjct: 775 SPAGRPLQRTRDLEGFWTGSYADVRREMRGRYPKHPWPDDPTRATPTAFTKRK 827 >UniRef50_O45244 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 n=4 Tax=Chromadorea RepID=DHX16_CAEEL Length = 1008 Score = 727 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 275/628 (43%), Gaps = 63/628 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV A + A+ +++ TG+GK+T LP L G +I +PRR+A Sbjct: 363 SLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCTQPRRVA 422 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ + K G VGY +R ++C T L+ +T+G+L R +P+L+ ++ Sbjct: 423 AMSVAARVADEVGCKLGTQVGYSIRFEDCTSEKTVLKYMTDGMLLREFLNEPDLASYSVM 482 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER+L D+ L+ D+ + R DLKLLI SATLD ++ +AP+ GR Sbjct: 483 MIDEAHERTLHTDILFGLVKDIAR-FRKDLKLLISSATLDAEKFSSFFDDAPIFRIPGRR 541 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIG-- 237 FPV+ Y P D A+ L Q G +L+FL G EI+ VQE L R Sbjct: 542 FPVDIYYTQAPEADYVDAAIVTIMQIHLTQPLPGDILVFLTGQEEIETVQEALMERSKAL 601 Query: 238 ----SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 +++ P+Y L + Q K P P+ RKVVLATNIAETS+TI+GI V+D Sbjct: 602 GSKIKELIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAETSVTIDGINYVIDPGFS 661 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEI 352 + FD R+G+ L +S+A+ QRAGRAGR PG L Q PEI Sbjct: 662 KQNSFDARSGVEHLHVVTISKAAANQRAGRAGRTGPGKCFRLYTAWAYKHELEEQPIPEI 721 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKM 411 +++L +++ L G D +LD PP L+ A L LGAL L+ G++M Sbjct: 722 QRTNLGNVVLMLKSLGIHDLVHFDFLDPPPQETLVIALEQLYALGALNHRGELTKLGRRM 781 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRS 469 A DP ++ M+++++ + + IAA+L + + + + Sbjct: 782 AEFPCDPCMSKMIIASEKYECSEEIVTIAAMLSCNAAVFYRPKAQVIHADSARKGFWSPA 841 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN--------------- 514 + +NV +SS + +R +D R QL Sbjct: 842 GDHITLMNVYNKWQESSFSQRWCVENYVQHRTMKRARDVRDQLVGLLERVEIETKSSTDT 901 Query: 515 --GMGA---------------------------MLDANDALSR--HEWLIAPLLLQGSAS 543 A N L W++ L+ S Sbjct: 902 IKIRKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKE 961 Query: 544 PDARILLALLVDIDELVQRCPQLVQQSD 571 + ++ L++ P + + Sbjct: 962 ---FMREMSEIESGWLLEVAPHYYKGRE 986 >UniRef50_Q10752 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 n=162 Tax=Eukaryota RepID=CDC28_SCHPO Length = 1055 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 178/641 (27%), Positives = 288/641 (44%), Gaps = 67/641 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV +LL A++ +L+ A TG+GK+T LP L G KI +PRR+A Sbjct: 417 SLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQPRRVA 476 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ ++ + G VGY +R +N T ++ +T+G+L R +P+L+ ++ Sbjct: 477 AMSVAARVAKEMDVRLGQEVGYSIRFENATSEKTVIKYLTDGMLLREFLTEPDLASYSVI 536 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ L+ D+ + R DLK+LI SAT+D ++ EAPV GR Sbjct: 537 IIDEAHERTLHTDILFGLVKDIAR-FRPDLKVLISSATIDAEKFSAYFDEAPVFYVPGRR 595 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQ-------RVQEQLA 233 +PV+ Y P P A+ Q +G +L+FL G EI+ + L Sbjct: 596 YPVDIYYTPQPEANYIQAAITTILQIHTTQPAGDILVFLTGQDEIELMSENMQELCRILG 655 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 RI +++LCP+Y L Q K P P G RKVVLATNIAETS+TI+G+ V+D Sbjct: 656 KRI-PEIILCPIYANLPSELQAKIFDPTPPGARKVVLATNIAETSITIDGVNFVIDSGFV 714 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEI 352 + ++PRTG+ L++ S+AS QRAGRAGR+ PG L + + PEI Sbjct: 715 KQNMYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLYTRRTYNNELDMVTSPEI 774 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKM 411 +++L+ +++ L G ++ ++D PP L+ + LL LGAL L+ G++M Sbjct: 775 QRTNLTNIVLLLKSLGINNLLDFDFMDAPPPETLMRSLELLYALGALNNRGELTKLGRQM 834 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRS 469 A DP L+ L+++ I ++L E D + + + + Q Sbjct: 835 AEFPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPG 894 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN--------------- 514 L L++ D+ F + R +D R QLAN Sbjct: 895 GDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSE 954 Query: 515 --------------------------------GMGAMLDANDALS--RHEWLIAPLLLQG 540 + + +++ + + +I L+ Sbjct: 955 SLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLT 1014 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + + + L++ P + + E Q Sbjct: 1015 TKE---YCRQITEIQPEWLLEISPHYFKPENIEELQKTQKR 1052 >UniRef50_B2UM09 Helicase ATP-dependent domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM09_AKKM8 Length = 861 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 257/854 (30%), Positives = 415/854 (48%), Gaps = 66/854 (7%) Query: 1 MSSLPVAAVLPELLTALD-CAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRR 58 SSLP+ + EL+ AL +P++LL APTG+GKST +P + G G I++++PRR Sbjct: 3 FSSLPIEEIRGELMEALRVPSPRILLKAPTGSGKSTGVPPMMDDAGLGDRGLIVVVQPRR 62 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +AAR +A+ +A L + G VGY +R + + TR+ VT+G+L R + P L GV Sbjct: 63 MAARLLARHVARLRGVELGKEVGYAVRFERYISSRTRIAYVTDGMLERWLTEWPSLEGVS 122 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-APVVISE 177 V+ DEFHERSL DL+L +LD+Q+G R DL +++MSATL+ L++ + V+ ++ Sbjct: 123 AVVFDEFHERSLSGDLSLGRVLDLQEGPRRDLAVVVMSATLEISGLREYMGGSCRVLEAQ 182 Query: 178 GRSFPVERRYLPLP---------AHQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQR 227 GR +PVE Y A + A E +R++ G +L+F+PGV EI++ Sbjct: 183 GRQYPVEVVYRAPRLVSDGRGRVAPPPIWEQAADVVREAVREDDCGDVLVFMPGVYEIRK 242 Query: 228 VQEQLASR-IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 286 E LA + S + PLYG+L+ Q A+ + +V+++TN+AETSLTIEG+R Sbjct: 243 TVELLAGKPWMSGRDVFPLYGSLAPEQQNCAVER--GDIPRVIVSTNVAETSLTIEGVRT 300 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 VVD R + +DP G+ L ++S+AS QRAGRAGR+ PG L ++ + R Sbjct: 301 VVDSGLVRRSGWDPYRGMDTLHLVKISKASAAQRAGRAGRVAPGRCFRLWSEAEQARKED 360 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLS 405 PE + DL+G ++ L WG + P WLD P + + A LL LGA E L+ Sbjct: 361 FDPPECFRVDLAGAVLNLAAWGVTVPENFRWLDVPAPLVMQRAVNLLAALGATEEDGSLT 420 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAA-----------TAAKIAAILEEPPRMGN--S 452 G++M A PRLA ++V+ +++ A + L + R + Sbjct: 421 DTGKRMTAFPLPPRLARLMVAGQDEQCAVELAAVAALMQGEGVAVKGGLNDHLRDSADYT 480 Query: 453 DLGVAFSRNQ-------------------PAWQQRSQQLLKRLNVRGGEADSSLIAPLLA 493 D + + ++ + L+V P Sbjct: 481 DFQAEWRAVEKAVDAGFGAAACTRWGISSRGAREAWMAYRQLLSVGSRGKARETPGPDFT 540 Query: 494 GAFA-----------DRIARRRG-QDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQ-G 540 A D + R G ++A G+G L + + E +A + + Sbjct: 541 AARPAVVRAMIESFADHVGVRNGVAANTCRMAGGVGGRLAEGSVVFQGEHFVAAEVAELS 600 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 + + R+ L+ ++L P+ + +D A ++ R+L G L ++ + Sbjct: 601 GKAVETRVGRCTLIAPEDLRSIWPERFSCGEEAVFDAALRRVRLHRKLMYGDLVLEDRDR 660 Query: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 + + + D L ++ W EQ RL + W+PE + P +E L A Sbjct: 661 GDAPPELAAPVLAEKVVDGTLKLVKWNDAVEQWIRRLNGLSVWMPELELPRFSEEDKLVA 720 Query: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 + G + +K +I LR L + LD P T+P G +RY Sbjct: 721 ISL----VCEGAVGYKDIKEREIIPVLRDWLSGWQAKALDDYAPVSLTLPNGQHAKVRYG 776 Query: 721 EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQ 780 ED+ P +++ +Q +FG A +P IA G VP+++E+L+P+QRP Q+T L FW+ Y +++ Sbjct: 777 EDSSPVISLTVQRLFGVAVSPRIANGAVPVIVEVLAPSQRPWQVTGSLESFWRNGYGQMK 836 Query: 781 KEMKGRYPKHVWPD 794 K++ GRYP+H WPD Sbjct: 837 KDLAGRYPRHRWPD 850 >UniRef50_Q47MH0 ATP-dependent helicase HrpA n=13 Tax=Bacteria RepID=Q47MH0_THEFY Length = 1324 Score = 724 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 211/818 (25%), Positives = 350/818 (42%), Gaps = 103/818 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV+ E+L A+ V+++ TG+GK+T LP L G+ G+I +PRRLA Sbjct: 76 AELPVSQKKDEILAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVLGQIGHTQPRRLA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+AE L G+ VGY++R + +T ++++T+G+L IQ+D L + Sbjct: 136 ARTVAARIAEELGTTLGEWVGYKVRFTDVSSDDTLVKLMTDGILLAEIQQDRMLRAYDTL 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D +R + AP+V GR+ Sbjct: 196 IIDEAHERSLNIDFILGYLKRLLP-RRPDLKVIITSATIDPERFSRHFDNAPIVEVSGRT 254 Query: 181 FPVERRYLPLPAHQRFDDA--------------VAVATAEMLRQESGSLLLFLPGVGEIQ 226 +PVE RY PL A Q DD + A E+ + G +L+FL G EI+ Sbjct: 255 YPVEVRYRPLTAEQVVDDEDTVAATDDRDQIQGICDAVDELCAEGPGDILVFLSGEREIR 314 Query: 227 RVQEQLASRIGSD--------VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 E L + V + PLY LS +Q++ P+G R++VLATN+AETS Sbjct: 315 DTAEALGKHLARRYPEGSPQAVEILPLYARLSAAEQQRVFQ--PRGKRRIVLATNVAETS 372 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ GIR VVD R++R+ RT + RL +R+SQAS QR GR GR+ GI + L ++ Sbjct: 373 LTVPGIRYVVDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRVAEGICIRLYSE 432 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 E +EPEIL+++L+ +++++ G D + ++D P + LL LGA Sbjct: 433 EDFLSRPEFTEPEILRTNLASVILQMAALGLGDVEEFPFVDGPDRRQVKDGVALLTELGA 492 Query: 399 LEG-----ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNS 452 L+ RL+A G+ +A L DPRL M+V A + IAA L + PR Sbjct: 493 LQPAKDGRHRLTALGRTLAQLPIDPRLGRMVVEADRNGCLHEVMVIAAALSIQDPRERPV 552 Query: 453 DLGVAFSRNQPAWQQRSQQLLKRLNVRG------GEADSSLIAPLLAGAFADRIARRRGQ 506 + A ++ + L LN+ E + + F + + R Q Sbjct: 553 EQQQAAAQKHARFAVPDSDFLAYLNLWNYLNERQQELSGNQFRKMCREEFLNYLRVREWQ 612 Query: 507 DG---------------------------------------------RYQLANGMGAMLD 521 D Y A G + Sbjct: 613 DIYAQLRQIVQSLGMKVNTAPADAKRIHLSLLAGLLSHIGLKDPEKHEYLGARGARFAIF 672 Query: 522 ANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDA 578 AL + W+++ L++ S + ++ + + + LV+++ W+ Sbjct: 673 PGSALFKKQPRWVMSAELVETSRLWA---RVNARIEPEWVEELAGHLVKRTYSEPHWEKK 729 Query: 579 QGTLKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQL 633 +G + A+ R+ + + + Q + + + +G + + ++L Sbjct: 730 RGAVMAYERVTLYGVPIVTQRKVDYGRIDPKTARELFIRHALVQGEWDTRHAFFRRNQKL 789 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL------KSLDIYQAL 687 + + D VDD+ L + + + V + + Sbjct: 790 LQEVEELEHRVRRRDIL-VDDDVLFDFYDQRVGAEVVSVRHFDSWWKRVRQQQPRLLDFD 848 Query: 688 RGLLDWGMQQR-LDSELPAHYTVPTGSRIAIRYHEDNP 724 + +L ++ P + R + Y + Sbjct: 849 KSMLVAEDAGEGIEEAYPDFWQ-QGEHRFRLTYQFEPG 885 >UniRef50_Q0RIL0 HrpA-like helicase, ATP-dependent n=12 Tax=Bacteria RepID=Q0RIL0_FRAAA Length = 902 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 325/838 (38%), Positives = 447/838 (53%), Gaps = 58/838 (6%) Query: 22 QVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVG 81 +L AP G GK+T +PL L + G++++ +PRR+A R A+R+A L+ + GD VG Sbjct: 71 VAVLVAPPGTGKTTLVPLAL--AGEVTGRVVVAQPRRIAVRAAARRMAWLVGGEVGDAVG 128 Query: 82 YRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLD 141 Y +R + VGP TR+EVVT GVL R +QRDP+L G G VILDE HER L ADLALA +LD Sbjct: 129 YTIRGERRVGPATRVEVVTTGVLVRRLQRDPDLPGTGAVILDECHERHLDADLALAFMLD 188 Query: 142 VQQGLRDDLKLLIMSATLDNDRLQQMLP----EAPVVISEGRSFPVERRYLPLP------ 191 V+ LR DL LL SAT D RL +L APVV + F VE + P P Sbjct: 189 VRATLRPDLLLLATSATADTPRLAGVLGAPGPPAPVVGAATARFDVEVVWSPPPGPLTPA 248 Query: 192 ----AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYG 247 R D VA LR+ SG +L+FLPG GEI V +LA S V + L+G Sbjct: 249 HGLRVDPRLLDHVAATVGRALRETSGDVLVFLPGAGEIAAVAGRLAGHRDS-VDVLALHG 307 Query: 248 ALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRL 307 S Q A+ P P R+VVLAT +AE+SLT+ G+R+VVD R R D GL L Sbjct: 308 RQSGGTQDAALRPGP--RRRVVLATAVAESSLTVPGVRVVVDAGLARSPRMDHARGLGSL 365 Query: 308 ITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQW 367 +T RVS++S QRAGRAGR PG + + +R AQ+EPE+ +DL+G ++L W Sbjct: 366 VTVRVSRSSAGQRAGRAGREAPGRVYRCWSAAEHDRLPAQAEPEVAVADLTGFALDLALW 425 Query: 368 GCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPRLAAMLVS 426 G + L PP + AA+ L+ LGAL+ R++ +G+ +AA+G PRLA L++ Sbjct: 426 GHPGGDGLGLLSDPPAGAMDAARASLRALGALDDAGRVTPRGRSIAAVGVHPRLAGALLA 485 Query: 427 AKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQ-----------RSQQLLKR 475 A AA I A+L G S G AW++ R ++ +R Sbjct: 486 GAGVVGAGRAADIVAVLSGDGPAGGSGPGSGSDDLLAAWRRLRANADRAASARWREESRR 545 Query: 476 LNVRG-----------------------GEADSSLIAPLLAGAFADRIARRRGQDGR-YQ 511 L G D ++ AF +R+AR R G Y Sbjct: 546 LRSAVAAATAAAAAAAVPADAPAARPGDGVTDDLAAGLVVGLAFPERLARARVPGGTTYL 605 Query: 512 LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 +A G A L A AL+ +WL + +G AR+ LA+ +D + L + + Sbjct: 606 MAGGTAAELAAGSALTGAQWLAVAVADRGVGRASARVRLAVALDEATAREAGAALRRTDE 665 Query: 572 TVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAE 631 V W G + A R ++G + + +PLA+P L A+L+G+R +GL+ L WT +A Sbjct: 666 EVAWS--GGDVVARRVERLGAIVLTERPLARPDPALLEAAVLDGLRREGLATLRWTRDAA 723 Query: 632 QLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLL 691 LR RL ++L WP V D +LLAA WL P + GV L+ +D QALR LL Sbjct: 724 GLRQRLAFCHRFLG-APWPDVADTALLAAAPDWLGPDLAGVRRRADLERIDAGQALRRLL 782 Query: 692 DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 W RLD+ P VP+GSR+ + Y + + P LAV++ E+FG P +A GRVP+V Sbjct: 783 PWPQAARLDALAPERLVVPSGSRVRLDYSDPDGPVLAVKVAEVFGWERVPPVADGRVPVV 842 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 809 L LLSPA RP+ +T DL+ FW+ Y V+ E++GRYP+H WPDDP PTRR + Sbjct: 843 LHLLSPAGRPVAVTSDLASFWRTGYPRVRAELRGRYPRHPWPDDPTTAPPTRRVTPRA 900 >UniRef50_A6VYA9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=A6VYA9_MARMS Length = 1308 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 196/805 (24%), Positives = 337/805 (41%), Gaps = 94/805 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLAA 61 SLPVA E++ A+ V+++ TG+GK+T LP L A GI G I +PRR+AA Sbjct: 81 SLPVATRADEIIKAIQDNQVVIIAGETGSGKTTQLPKMCLQAGRGIAGLIGHTQPRRIAA 140 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+++ L G+ VG+++R + T ++++T+G+L IQ+D L +I Sbjct: 141 RSVAERISDELQVNLGEQVGFQVRFSDESNEETLIKLMTDGILLAEIQQDKRLYKYDTII 200 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L V R DLK+++ SAT+D +R + AP++ GR++ Sbjct: 201 IDEAHERSLNIDFLLGYLKQVLAA-RPDLKVIVTSATIDVERFSEHFENAPIIEVSGRTY 259 Query: 182 PVERRYLPL---------PAHQRFDDAVAVATAEMLRQES-------GSLLLFLPGVGEI 225 PVE RY PL Q + + A ++ +E G +L+FLPG EI Sbjct: 260 PVEIRYQPLLSKSDSEELDEDQSMEQGILDAVELLIAEERQSGYRGAGDILVFLPGEREI 319 Query: 226 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 + E L + PLY LS ++Q++ R++VL+TN+AETSLT+ GIR Sbjct: 320 RDTAEILRRAELRSTEVLPLYARLSASEQQRIFKS--HSGRRIVLSTNVAETSLTVPGIR 377 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 V+D R++R+ R+ + +L +++SQAS QRAGR GR+ GI + L +E Sbjct: 378 YVIDPGLARISRYSVRSKVQQLPIEKISQASANQRAGRCGRVADGICIRLYDEEDFNNRP 437 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLS 405 ++PEI +++L+ +++++ + +++ P + R L LGAL ERL+ Sbjct: 438 EFTDPEIFRTNLASVILQMANLKLGAVEKFPFVEMPEKRMINDGYRALTELGALHKERLT 497 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPA 464 G+++A L DP+L +L++A+ A I + L PR D + Sbjct: 498 PIGRQLAKLPIDPKLGRILIAAEQHSVLKEVAIIVSALSIADPRERPQDKKTQSDQAHAV 557 Query: 465 WQQRSQQLLKRLNVR------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQ------- 511 + L LN+ + + F + + R +D Q Sbjct: 558 DKDEDSDFLVFLNLWERFEEQRQALSQNQLRQYCRKQFLNFMRMREWRDIHRQIMIACKQ 617 Query: 512 ---------------------------------------LANGMGAMLDANDALSR--HE 530 + L + + Sbjct: 618 LGFKEVQHEERHYEAIHRALLAGMFTQVANKMEDSKEMLGCRSRKLAIFPGSMLFKKPPQ 677 Query: 531 WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQ 589 W++A L++ S + +D + + V++ ++ QG + A ++ Sbjct: 678 WIMAAELIETSKL---YARVTARIDPAWIEEYAAPFVKRQYFDPHFERNQGRVMANEQVS 734 Query: 590 IGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGL-----SVLNWTAEAEQLRLRLLCAA 641 + L + + ++ + + +G + +L A Sbjct: 735 LYGLIIVAKRRIDYGHVHPEDAREIFIRSGLVEGELRTKQAFFRKNKALMELLE----AQ 790 Query: 642 KWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRL-- 699 + VDDE++ A + L H+ + SL L D Q Sbjct: 791 EAKLRKRDILVDDETVFAFYNSRLPDHVRNLKSLEHFVKTSPDALLMTREDLINQDVSVD 850 Query: 700 DSELPAHYTVPTGSRIAIRYHEDNP 724 D P + + G + I Y D Sbjct: 851 DQAFPDSFGL-NGVALPIDYKFDPG 874 >UniRef50_A8HQ16 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8HQ16_CHLRE Length = 830 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 285/833 (34%), Positives = 430/833 (51%), Gaps = 69/833 (8%) Query: 25 LSAPTGAGKSTWLPLQLLAH-----PGINGKIILLEPRRLAARNVAQRLAELLNEKPGDT 79 + AP GAGK+T +PL LL H G N KI++LEPRR+AA+ A+R+A L + G T Sbjct: 6 VQAPPGAGKTTVVPLALLRHNPEYLRGSNNKILVLEPRRVAAKGAARRMAASLRQNVGGT 65 Query: 80 VGYRMRAQNC-----------VGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHER 128 VGYR+R V TR+EVVTEG+L R +Q DPEL GVG V+ DEFHER Sbjct: 66 VGYRVRLDTKARMGDGGGGCGVSAATRIEVVTEGILLRRLQHDPELEGVGAVVFDEFHER 125 Query: 129 SLQADLALALLLDVQQGLRDDLKLLIMSATLDND--RLQQMLPEAPVVISEGRSFPVERR 186 +L AD+ALAL DVQ+ R DL+L++MSATL P+V+SEGR +PV + Sbjct: 126 NLDADVALALCADVQRLARPDLRLVVMSATLGGGLGDRAGSNRGVPLVVSEGRCYPVTTK 185 Query: 187 YLPLP---AHQRFDDAVAVATAEMLRQES----------GSLLLFLPGVGEIQRVQEQLA 233 +L P + AVA A LR G +L+F+PGVGEI+ + L Sbjct: 186 HLGRPDATERGALERAVADAVTMALRDGGAAESGDDGVGGDVLVFVPGVGEIRN-CDWLQ 244 Query: 234 SRIGSDVL-LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +R+ ++ + L+G ++ ++Q++ + R+V+L+T IAE+S+TI+G+ VVD Sbjct: 245 TRLKRRMVSIMCLHGNMAPDEQQQGNSARERRRRRVILSTPIAESSVTIDGVTAVVDSGL 304 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R R+DP T + RL T R+S+AS QR GRAGR PG L ++ A SEPEI Sbjct: 305 RRAPRYDPSTAINRLETIRISEASAEQRRGRAGRTAPGRCYRLWSERD--SLPAVSEPEI 362 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG--ERLSAQGQK 410 L +DL+ +EL WG D + + WLD PP + A + LL LGA+E R + G+ Sbjct: 363 LTADLAPTALELALWGSPDGSGLPWLDPPPADLMEAGRELLLDLGAVEAGVGRPTPHGRL 422 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP---RMGNSDLGVAFSRNQPAWQQ 467 +A LG PR ++ + A AA +A +L R G A + Sbjct: 423 LARLGVHPRWGHAVLRGASQSCAELAAVVATMLGSERDVLRGGGGGPRSADIMLRLEALA 482 Query: 468 RSQQLLK-----------RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGR---YQLA 513 R +L + R + L+ L+A A+ DRIA R+ + + + L+ Sbjct: 483 RDGELGRGTGAASSAAAFDAAWREQLSREGLVGALVAAAYPDRIAERKDRSNKRAAFTLS 542 Query: 514 NGMGAMLDANDALSRHEWLIAPLLLQGS--------ASPDARILLALLVDIDELVQRCPQ 565 +G +D L+ E++ + + I A + + + Sbjct: 543 SGKAVHTVEDDPLASFEYVAVAEIGGVGPAAAWRRDGGGNDSIRSAAGLSSLAIKRYLSD 602 Query: 566 LVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDK-GLSVL 624 ++Q + + + R+ ++G L + Q A S+D+ A+L G ++ G+ + Sbjct: 603 MIQVTACMR--AGAKQVLGRRQKRLGCLVLSEQS-APVSDDKAMPALLKGFKEMGGIRAV 659 Query: 625 NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRG-LKSLDI 683 + + E E R R++C P + D LL + WL PH++G S L Sbjct: 660 SLSKEVEAWRQRVICTTAK-GLAALPDLSDTGLLNSAAKWLAPHLSGARSKSHNLPPPPG 718 Query: 684 YQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTI 743 A R L+ W +QQ +++E P H +PTG+R + Y D P + ++QE+FG P + Sbjct: 719 LDARRSLVPWELQQLVEAEAPTHLMLPTGTRALVDYSGDT-PCVRCKLQEVFGLPDTPRL 777 Query: 744 AQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDP 796 A GR+PL LELLSP +P +T DL+ FW+ +Y +V+K+++GRYPKHVWP+DP Sbjct: 778 AGGRIPLTLELLSPGGQPAAVTSDLASFWRNSYPDVRKDLRGRYPKHVWPEDP 830 >UniRef50_Q6MIP3 Helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIP3_BDEBA Length = 847 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 262/851 (30%), Positives = 421/851 (49%), Gaps = 58/851 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ + +PE+ + L ++++A GAGK+T LP LL + K+I+LEPRR+AA Sbjct: 8 LPIDSFVPEIQSLLKNGQNLVITAAPGAGKTTRLPPALLQ--VTSKKVIVLEPRRMAAIA 65 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A R+AE + G+ +GY++R N TRL +TE +L R + DPELS V LVILD Sbjct: 66 AAHRIAEEQGWQVGEEIGYQVRFANKTSNKTRLVFMTEALLARQMIDDPELSDVELVILD 125 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHERS+ DLAL LL ++Q+ R D+K+L+MSATL+ +++ L + P+V G+ F + Sbjct: 126 EFHERSMHVDLALGLLRELQELGR-DIKILVMSATLEAEKIASYLGDCPIVSVPGKLFEL 184 Query: 184 ERRYLPLPAH----QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS-RIGS 238 + RY +F DAVA + Q +L+FLPGVGEI R ++ L S Sbjct: 185 DVRYQKGSQQLQTFPQFFDAVAQTVKDAQLQTRHDILVFLPGVGEIDRAKDALQSWADSK 244 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 ++ L PL+G+L+L DQR+A+ ++V+L+TNIAE+S+TI+G+ V+D + + Sbjct: 245 NIELVPLHGSLNLEDQRRALKKT--SQQRVILSTNIAESSVTIDGVNTVIDSGLAKNMKQ 302 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 D RTG +RL R+S +S QR+GRA R PG++ + K EI + DL+ Sbjct: 303 DHRTGFSRLELGRISLSSAIQRSGRAARQFPGVAYRMWNKMDELSFGKSEVAEIQRVDLT 362 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGND 417 L+ L G +D SW ++P V + A R L++ GA++ ++A G+K+ Sbjct: 363 ESLLFLSAQGVTDFDSFSWFEKPQKVAIENALRYLRISGAVDDNNKITALGRKILHFPLP 422 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG------------NSDLGVAFSRNQPAW 465 RLA +++ + A+++AA+L+E + DL Sbjct: 423 VRLAKLMLVGMDLGAIELASEMAALLQERDILRRESVASFLGDNLECDLSARLEVLHQFR 482 Query: 466 Q--------------------QRSQQLLKRL--------NVRGGEADSSLIAPLLAGAFA 497 Q ++ Q+L KRL + +L +L A+A Sbjct: 483 QNKKAPAGSAYFSLQTVDQAARQIQELAKRLQKSSDTPTAALKKDQQLALTKKILLTAYA 542 Query: 498 DRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDID 557 DR+ RRRG+ R + G G L + E+ A ++GS+ + + LA + D Sbjct: 543 DRLCRRRGKTERALMVGGRGVKLQNETLVKNSEFFAALNGVEGSSDAETMVSLACGAEKD 602 Query: 558 ELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIR 617 ++ + ++ V + + +G + L ++ L+ S E+ + + + Sbjct: 603 FVLDHFRNDIVKTRDVSFVEEKGQFFTREYRSLYGLPLEEPSLSPASATEVSEKLPQILA 662 Query: 618 DKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRG 677 DK VL RL + + +D E L G ++ Sbjct: 663 DKFDLVLKTNEALSHWWERLQFLQQQ----EELNLDIEKLKVEA---FTQACMGESKMQA 715 Query: 678 LKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGE 737 + D+ +L L E+P VP+GS+I + Y D PP L VR+QE+FG Sbjct: 716 VMEKDLCFFFESVLPPETANTLRREIPDRIEVPSGSKIRVIYPSDKPPYLEVRIQEVFGL 775 Query: 738 ATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 P + + +P+ L LL P RP+Q+T +L FWK Y EV+KE++ +YPKH WP+DPA Sbjct: 776 MQTPKVYKQTIPITLHLLGPNFRPVQVTSNLESFWKNGYPEVRKELRIKYPKHQWPEDPA 835 Query: 798 NTAPTRRTKKY 808 + P + ++ Sbjct: 836 DGIPEAKGRRR 846 >UniRef50_C4M6S9 Helicase, putative n=3 Tax=Entamoeba RepID=C4M6S9_ENTHI Length = 953 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 167/636 (26%), Positives = 278/636 (43%), Gaps = 61/636 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 LP+ ++ +L+ ++ ++L TG GK+T L L NG+I +PRR+AA Sbjct: 292 ELPIYSMRNKLMESIKKNQIIILIGETGCGKTTQLTQYLDEDGYSKNGRIGCTQPRRVAA 351 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +V+QR+AE + K G+ VGY +R ++ TR++ +T G+L R D +L ++I Sbjct: 352 ISVSQRVAEEMKVKLGEEVGYSIRFEDKTTEKTRIKYMTNGMLLREYLVDRDLPQYKVLI 411 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL + R + KL+I SATLD D+ +AP++ GR+F Sbjct: 412 LDEAHERTVGIDILFGLLKETI-KRRPEFKLIITSATLDADKFSIYFNKAPIIHIPGRTF 470 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE+ YL P + L Q G +L FL G EI + ++ Sbjct: 471 PVEKLYLEEPEMDYIQSGIETIMKIHLTQPPGDILFFLTGQEEIDSTCSIINEKVQKLDK 530 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++ P+Y +LS Q++ PAP RK ++ATNIAETS+TI+GI VVD + Sbjct: 531 RYPKLIALPIYASLSTEQQKRIFEPAPPFTRKCIVATNIAETSITIDGIYFVVDSGFVKQ 590 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQ 354 +PR G+ +L+ +SQA QRAGRAGR PG L ++ S PEI + Sbjct: 591 KVHNPRLGMDQLLITPISQACADQRAGRAGRTGPGKCYRLYTEKAYLNEMPIVSIPEIQR 650 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAA 413 ++L+ ++ L G ++ ++D P L++A L + AL + +L+ G+KMA Sbjct: 651 ANLADTVLILKAIGINNVIDFDYMDPPMHNTLISALHHLYAISALDDDGKLTQLGRKMAE 710 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQL 472 +P LA ML+ ++ + I A L + + R + + Sbjct: 711 FPLEPPLAKMLIVSEQFGCSEEVVTIVAALSVGNLFIRPKEKEEEADRRKRQLSSSAGDH 770 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ--------------------- 511 L L V + + + + + +D R Q Sbjct: 771 LTMLQVYNNWIKNGKSPSWCKENYINFRSLYKCEDIRKQLIKIMKKYHIQLISSHNNPIP 830 Query: 512 ------------------------LANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPD 545 L +G + +L EW++ L+ + Sbjct: 831 IIKSIVSGFFVHAAKRDPQEGYRTLVDGQQVFIHPTSSLFGRNPEWVVYHELVLTTKE-- 888 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + + +D L++ P Q+SD + ++ Sbjct: 889 -YMREIIAIDPQWLIELAPAFYQKSDGTQLNERMRK 923 >UniRef50_Q1N1U8 ATP-dependent helicase HrpB n=1 Tax=Bermanella marisrubri RepID=Q1N1U8_9GAMM Length = 824 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 264/839 (31%), Positives = 425/839 (50%), Gaps = 47/839 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 MS+ P+++ + ++ +L QV+L+AP G GKST LPL L+ P + G+I LLEPRRL Sbjct: 1 MSAYPISSHIDDIAKSLANHGQVILAAPPGTGKSTVLPLSLMEQPWLAQGQIWLLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA+ VA+RL++ L+E G ++G + ++ V+TEG+LT+ + ++ +++ L Sbjct: 61 AAKQVAKRLSQQLSEPLGQSIGLITGEDAKTSNSNKVVVMTEGILTQKLIQENDINNCAL 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I DEFHER+L DL LAL+ ++ LR+DLK LIMSATL+ DRL + L +AP++ + Sbjct: 121 IIFDEFHERNLATDLNLALIQQCREILREDLKCLIMSATLEIDRLSEAL-QAPLIEVNTK 179 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 ++ Y A V A + Q G L+FLPG+ EIQ V+ L + Sbjct: 180 IHELDILYQIKNASDNLSQQVNRACQSL-NQFKGDTLVFLPGLSEIQHVKSALIESGKNP 238 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 + L+ + Q+ K++LA++IA+TSLTI I VVD ER+AR++ Sbjct: 239 DHIFILHSSTPQKQQQALFEDT--DFEKIILASDIAKTSLTIPSITKVVDSGLERIARYN 296 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 TG+ LIT S+A+M QRAGRAGR + G + L +++Q R +A S I Q DLS Sbjct: 297 ANTGMDELITIEASKATMLQRAGRAGRTQHGRVIRLGSEDQFSRRSAFSPIAIEQEDLSA 356 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGNDP 418 + L WG ++ + L++P N A +LL L AL+ R++ G+++A G P Sbjct: 357 FALALSTWGSTELSDYLLLNKPNSRNYDQALQLLHNLDALDERFRVTDHGKQLAMKGIHP 416 Query: 419 RLAAMLVSAKND-DEAATAAKIAAILEEPPRMG----NSDLGVAFS-----------RNQ 462 RL+ ML + D + A IAA+L E + NSDL + Sbjct: 417 RLSHMLHHFHDQPDMLSLACIIAALLTEGDFLQTPALNSDLQLRIELITEQLLHNKTHGG 476 Query: 463 PAWQQRSQQLLKRLNVRGG-------------EADSSLIAPLLAGAFADRIARRRGQDGR 509 + L + + + + + +LA A+ DRIA++RG+ Sbjct: 477 RLGRINQANLSRIIKRYKKLVKQFEHQTKQEIQWHDTDVGRVLAQAYPDRIAQQRGRG-- 534 Query: 510 YQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ 569 Y+L NGMGA + D+ ++++ + + I LA ++ + Sbjct: 535 YRLQNGMGASIHTKDSAKHSDYMVIAATASSAYDNNQFIKLATAIEKQTIENEFAHHTSL 594 Query: 570 SDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAE 629 D + + G+L + + + ++ + + G+ ++ Sbjct: 595 DTHFLMKDKLFKVTTEK---FGELILNTTT-SPANPEDFKFYIRQEVIKNGIEYFDFNDS 650 Query: 630 AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRG 689 + L +L A P+ ++P+ DE L+ +++ WLLP +T V L ++D + AL Sbjct: 651 QQALLNKLNLAHSLFPD-NYPSFADECLINSIDDWLLPFITDV----HLCNMDYHNALLS 705 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749 +DW QQ + P +T+P+G I Y +D + ++QE FG IA+ R+P Sbjct: 706 RMDWSKQQAFKQDFPQEFTLPSGRTTQIHYEKDKA-IVKAKLQECFGLTGIQKIAKNRLP 764 Query: 750 LVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 L LLSPAQRPL T+D FWK Y EV+KE +GRY KH WP+DP + + +TK++ Sbjct: 765 LEFHLLSPAQRPLAQTKDFDFFWKEVYPEVRKENRGRYAKHPWPEDPLSAIASHKTKRH 823 >UniRef50_C4JEY7 ATP-dependent RNA helicase DHX8 n=25 Tax=cellular organisms RepID=C4JEY7_UNCRE Length = 1446 Score = 720 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 194/666 (29%), Positives = 298/666 (44%), Gaps = 70/666 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLP+ ELL A+ +++ TG+GK+T +P L G KI +PRR+A Sbjct: 453 SLPIYQFREELLQAIADHQIIIIVGETGSGKTTQIPQYLHEAGYTKGGMKIGCTQPRRVA 512 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+AE + K G+ VGY +R ++ T L+ +T+G+L + + +P+LS + Sbjct: 513 AMSVAARVAEEMGVKVGNEVGYAIRFEDATSDKTILKYMTDGLLLKELLTEPDLSQYAAL 572 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER++ D+A LL D+ + R DLKLLI SAT+D + Q+ +AP+ GR Sbjct: 573 MIDEAHERTVPTDIACGLLKDIAKA-RPDLKLLISSATIDAQKFQKYFDDAPIFNIPGRR 631 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--- 237 +PV+ Y P A+ + Q G +L+FL G EI+ ++ L Sbjct: 632 YPVDIHYTSQPEANYLAAAITTVFQIHITQGRGDILVFLTGQEEIEAAEQNLQETARKLG 691 Query: 238 ---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++++CP+Y L Q K P P G RKVVLATNIAETSLTI+GI V+D + Sbjct: 692 GKVPEMIICPIYANLPSELQTKIFEPTPPGARKVVLATNIAETSLTIDGIVYVIDPGFVK 751 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 F+PRTG+ L+ S+AS QRAGRAGR+ PG L K A + PEI Sbjct: 752 ENVFNPRTGMESLVVTPCSRASAGQRAGRAGRVGPGKCFRLYTKWAYHNELEANTTPEIQ 811 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMA 412 +++LS +++ L G D ++D PP L+ A L LGAL + L+ G++MA Sbjct: 812 RTNLSSVVLMLKSLGIDDLLDFDFMDPPPAETLIRALEQLYALGALNDHGELTKIGRQMA 871 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRS- 469 DP LA +++A I A+L E D + + + + Sbjct: 872 EFPTDPMLAKAILAAGKYGCVEEILSIIAMLGEASALFYRPKDKKIHADSARARFTVKDG 931 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA---------------- 513 L LN+ DS F + + R +D R QLA Sbjct: 932 GDHLSLLNIWNQWVDSDFSYVWARENFLQQRSLTRARDVRDQLAKLCDRVEVAVSTAGAN 991 Query: 514 -------------------------------NGMGAMLDANDALS--RHEWLIAPLLLQG 540 NG L + L +W+I L+ Sbjct: 992 NLVPIQKAITAGFFPNAARLQRGGDSYWTVKNGQTVYLHPSSTLFEVNPKWVIYHELVLT 1051 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 S + + + + LV+ P +Q D + + + A IG L++ L Sbjct: 1052 SKE---YMRSNMPLQPEWLVEVAPHYHKQKDLETLANRKLEVCA----AIGALSLDKNCL 1104 Query: 601 AKPSED 606 +++ Sbjct: 1105 GSANKE 1110 >UniRef50_UPI000185C193 ATP-dependent helicase HrpB n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C193 Length = 805 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 257/824 (31%), Positives = 392/824 (47%), Gaps = 50/824 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LP A+ L L A+ ++ AP G GK+T +P + + G+I++ PRR+A Sbjct: 14 AGLPFASQLASLADAVRDHDV-VVQAPPGTGKTTLVPPAV--ANTLGGRIVVTAPRRVAV 70 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+ A+RLA+L K G+ VGY +R + TR+E VT GVL R + RD ++ V+ Sbjct: 71 RSAARRLAQLSGTKLGEEVGYSVRGDSRTSRATRVEFVTPGVLLRRLLRDGDVDA-SAVL 129 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISEG 178 +DE HER L DL LA++ D++ +RDDL+L+ MSAT+D + +L AP+V +E Sbjct: 130 IDEIHERGLDTDLVLAMVRDLRD-IRDDLRLVAMSATVDAPKFAALLGGSTPAPIVAAEA 188 Query: 179 RSFPVERRYLPLPAH-------QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 FP++ RY P P F VA + + + +G +L+FLPG+ E++R Sbjct: 189 EIFPLDIRYAPFPQRLDARGVTDDFLQHVAAQASTLTEEAAGDVLVFLPGIREVERCAGY 248 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 +A S+V + L+G S +Q + G R+V+++T IAE+S+T+ G+R VVD Sbjct: 249 IAD--SSEVAVLTLHGQQSSEEQDRVFRRQADG-RRVIVSTAIAESSVTVPGVRAVVDAC 305 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R R D G + L+T +Q+S QRAGRAGR PGI + +++ + A PE Sbjct: 306 LARGPRLDIARGFSGLVTSSCAQSSANQRAGRAGREGPGIVVRCVSQSEFASFPAWPAPE 365 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQK 410 I +DL+ L++ WG + LD PP + AA +L LGA++ ++ G+ Sbjct: 366 IEVADLTQALLDAAAWGTPGMQGLKLLDAPPPHHAEAANHILAGLGAVDEAGSITELGRT 425 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQ 470 +A L PR+ L++A A++ + + A Q R Sbjct: 426 LATLPVHPRMGRALLTAT------------AMMPQHTDAIARTVEKLTDARGLAKQVRRI 473 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLDANDALSRH 529 +L S + A + A A+ D I RRR Y G A L L Sbjct: 474 ELET--ETPANLLPSDIPALVTALAWPDFIGRRRSANSDEYLFTGGTAAELARGSDLRGQ 531 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 EW+ A + + S A I +D++ + L T QG ++A R Sbjct: 532 EWIAAADISRLSHGR-ALIRTGEAIDLEIAMLAAGHLAHTETTAR--VEQGRVRARERDL 588 Query: 590 IGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDW 649 +G + + + ++ E + + N + EQLR R+ W Sbjct: 589 LGAIELSSRQVSPTPEQCIAANSAWLADALADASPNLDRDTEQLRRRMAFLYTHRG-SPW 647 Query: 650 PAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTV 709 P V L A E + +LD + LR LL W D +P V Sbjct: 648 PDVSPAGLAAQAELLFAGELDRPT----PPTLDA-EHLRRLLPWPEATDFDRLVPERLEV 702 Query: 710 PTGSRIAIRY-----HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQI 764 P+GS+I + Y E+ LAV++QE FG A P + + P+ + LLSPAQRPL + Sbjct: 703 PSGSKIRLEYPEDPTDEEAQIVLAVKLQECFGLAETPQVLEK--PVTMHLLSPAQRPLAV 760 Query: 765 TRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 T DL FW GAY +V+ EM+GRYPKH WP++P T RTK+ Sbjct: 761 TGDLESFWNGAYAQVRSEMRGRYPKHPWPENPWEEQATARTKRR 804 >UniRef50_A9FJ06 ATP-dependent RNA helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FJ06_SORC5 Length = 907 Score = 718 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 299/910 (32%), Positives = 425/910 (46%), Gaps = 113/910 (12%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRL 59 M LP+ +LP+L AL P V+L AP GAGK+T +P LL G+I++LEPRRL Sbjct: 1 MQPLPIDPILPDLCAALRARPSVVLEAPPGAGKTTRVPRALLDAGFAERGEILVLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+AE L E+ G+TVGY MR + P TR+ VTEGVLTR + D EL GV Sbjct: 61 AARLSARRVAEELGERVGETVGYTMRFEEASSPATRVRFVTEGVLTRRLLVDRELRGVSA 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE--------- 170 V+LDEFHER L D+ALALL +Q+G R DL+L++MSATLD + L Sbjct: 121 VVLDEFHERHLAGDVALALLRRLQRGARPDLRLVVMSATLDAGPIAAFLGGPEAQPAPAA 180 Query: 171 ---------------APVVISEGRSFPVERRYLPLPA------------------HQRFD 197 AP + +EGR F V YLP + + Sbjct: 181 EAERGHDTTSAGASVAPTLRAEGRMFDVAIEYLPSARVSASTHAAGDRRGPAHWGDRTLE 240 Query: 198 DAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLAS-RIGSDVLLCPLYGALSLNDQR 255 VA + +++ + G +L+FLPG EI+R E A+ D+LL PL+G+LS +Q Sbjct: 241 SLVASSVRQLIEEGLDGDVLVFLPGSAEIRRAMEACAAIAKSEDLLLLPLHGSLSAAEQD 300 Query: 256 KAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQA 315 +A+ PA RK++L+TN+AETS+TI+G+ VVD RVA P +GL L +++A Sbjct: 301 RAVRPA--DRRKIILSTNVAETSVTIDGVVAVVDSGLARVAAHAPWSGLPTLRVAPIARA 358 Query: 316 SMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQM 375 S QRAGRAGR PG L L + PEI + DL+ ++EL G +D Sbjct: 359 SAAQRAGRAGRTRPGRCLRLYTRGDLASRPEHEAPEIRRLDLAETVLELCAAGVTDLEAF 418 Query: 376 SWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 WL+ PP L AA+ LL LGAL+ R ++ G++M PR A M+V A+ A Sbjct: 419 GWLEAPPAAGLAAAEALLVRLGALDEGRRVTPTGRRMLRFPAHPRQARMIVEAERRGVAC 478 Query: 435 TAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAP---- 490 +AA++ E S G + + + S LL L + A Sbjct: 479 DGCTLAALVAERDLGAPS--GAREPHGRRSDARHSSDLLAALQAFEEADRARFAADRLRW 536 Query: 491 ------------------------------------------LLAGAFADRIARRR---- 504 + + DR+ R R Sbjct: 537 LGVDPARALTVERTRKQLSRLADHRSAAPPETVEAREIAQRIAILSGYPDRVGRLRRPTS 596 Query: 505 --GQDGRYQ-LANGMGAMLDANDALSRHEWLIAPLLLQGSASPDAR--ILLALLVDIDEL 559 G+ GR LA G A L + + ++A + + S AR + A ++ D L Sbjct: 597 ATGRTGREVVLAAGGTAALSEASVIDEVDLVVAVDIEERSEGRSARTVVRAASAIEADWL 656 Query: 560 VQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAK----PSEDELHQAMLNG 615 + ++ + W+ A ++ RRL L + A P + + + Sbjct: 657 LDLFTDAIRDTTEAAWNAAAERVEVVRRLSYDALVLDEARPAAGAGGPLAEAAARELAAQ 716 Query: 616 IRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSL 675 R KG + LR+ P+ P V ++++LA LE G S Sbjct: 717 ARAKGWRAFVKGDALDSWLLRVAFVRAHCPDAALPDVGEDAVLATLEAL----CDGRRSF 772 Query: 676 RGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMF 735 L+ D+ A++ L + L P +P G R + Y PP+LA R+Q+ F Sbjct: 773 AELRDADLSSAVQASLGPAKARALAELAPESIVLPGGRRARLEYTAGAPPSLASRLQDFF 832 Query: 736 GEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDD 795 G A P +A GRVP+VL L +P QRP+Q+T DLS FW Y + KE++ RYPKH WPDD Sbjct: 833 GMAEGPRVAGGRVPVVLHLCAPNQRPVQVTTDLSGFWARHYPAIAKELRRRYPKHAWPDD 892 Query: 796 PANTAPTRRT 805 PA+ AP R Sbjct: 893 PAHAAPPSRA 902 >UniRef50_Q5KGT3 Pre-mRNA splicing factor, putative n=7 Tax=Dikarya RepID=Q5KGT3_CRYNE Length = 1261 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 167/626 (26%), Positives = 276/626 (44%), Gaps = 62/626 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP AV EL+ + +++ TG+GK+T L L NG I +PRR+AA Sbjct: 558 LPAFAVREELMGMIRDHQVLVVVGETGSGKTTQLGQFLYEDGYCANGMIGCTQPRRVAAM 617 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + G+TVGY +R ++C +T+++ +T+GVL R + +L ++IL Sbjct: 618 SVAKRVSEEMECTLGETVGYAIRFEDCTSKDTKIKFMTDGVLLRESLNEGDLDRYSVIIL 677 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ + LL + R DLKL++ SAT++ ++ Q A GR+FP Sbjct: 678 DEAHERSLSTDILMGLLRKILTRRR-DLKLIVTSATMNAEKFSQFFGNAATYTIPGRTFP 736 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-----G 237 VE + P D A+ L G +L+F+ G +I+ + + R+ Sbjct: 737 VEIFHSKSPCEDYVDSAIKQVLQIHLSSSQGDILVFMTGQEDIECCCQVIEERLSQLDDP 796 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y + + Q K P P G RKVV+ATNIAETSLT++GI VVDC ++ Sbjct: 797 PPLAVLPIYSQMPADLQAKIFQPTPDGRRKVVVATNIAETSLTVDGILYVVDCGYSKLKV 856 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQSD 356 ++P+ G+ L +SQA+ QRAGRAGR PG L + A + PEI +++ Sbjct: 857 YNPKVGMDALQITPISQANCGQRAGRAGRTGPGFCYRLYTETAYLNELFASNIPEIQRTN 916 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 L+ ++ L G + + ++D PP N+L + L +LGAL+ L++ G+KM+ Sbjct: 917 LANTVLLLKSLGVKNLLEFDFMDPPPQENILNSMYQLWVLGALDNVGNLTSIGRKMSDFP 976 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 +P LA ML+ + + ++ I ++L P + + L Sbjct: 977 MEPSLAKMLIVSVDYQCSSEMLTIVSMLSVPSVFYRPPQRAEESDAAREKFFVPESDHLT 1036 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL---------------------- 512 L+V + F R+ ++ R QL Sbjct: 1037 LLHVYTQWKSNGYSDSWCMKHFLHPKLMRKAREVRGQLEDIMKQQKMDLLSVGTDWDIVR 1096 Query: 513 -----------------------ANGMGAMLDANDALSR----HEWLIAPLLLQGSASPD 545 G+ +L AL ++++ L+ S Sbjct: 1097 KCITAGYFHQAARVKGIGEYMNIRTGLPCVLHPTSALYGLGYMPDYVVYHELVLTSKQ-- 1154 Query: 546 ARILLALLVDIDELVQRCPQLVQQSD 571 ++ VD L + Sbjct: 1155 -YMMCVTSVDPYWLADLGSVFFSIRE 1179 >UniRef50_Q6P404 DEAH (Asp-Glu-Ala-His) box polypeptide 38 n=9 Tax=Eukaryota RepID=Q6P404_DANRE Length = 1258 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 175/644 (27%), Positives = 284/644 (44%), Gaps = 63/644 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAAR 62 LP+ AV +LL + V++ TG+GK+T L L + G + +PRR+AA Sbjct: 563 LPIFAVRQQLLNIIRDNNIVIVVGETGSGKTTQLTQYLHEDGYTSYGMVGCTQPRRVAAM 622 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E +N G+ VGY +R ++C T ++ +T+G+L R R+ +L VI+ Sbjct: 623 SVAKRVSEEMNSNLGEEVGYAIRFEDCTSEKTMIKYMTDGILLRESLRESDLDHYSAVIM 682 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ LL +V R DLKL++ SAT+D+D+ P+ GR+FP Sbjct: 683 DEAHERSLNTDVLFGLLREVV-SRRSDLKLIVTSATMDSDKFASFFGNVPIFHIPGRTFP 741 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-----G 237 V+ + P + AV A L G +L+F+PG +I+ +Q+ R+ Sbjct: 742 VDILFSKTPQEDYVEAAVKQALQIHLSGMVGDILIFMPGQEDIEVTSDQIVERLADLENA 801 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y L + Q K AP G+RK ++ATNIAETSLT++GI VVD ++ Sbjct: 802 PALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVVDSGYCKLKV 861 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQSD 356 F+PR G+ L +SQA+ QRAGRAGR PG L + + + PEI +++ Sbjct: 862 FNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCYRLYTQSAFKNEMLTTTIPEIQRTN 921 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 L+ +++ L G D ++D PP N+L + L +LGAL+ L+ G+ M Sbjct: 922 LANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGALTPTGRLMVEFP 981 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 DP L+ ML+ + + +A I ++L P + + + L Sbjct: 982 LDPALSKMLIVSCDMSCSADILIIVSMLSVPSIFYRPKGREEESDQVREKFSVPESDHLT 1041 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL---------------------- 512 LNV +++ + F A R+ ++ R QL Sbjct: 1042 YLNVYLQWKNNNYSSIWCNDHFIHTKAMRKVREVRAQLKDIMVQQKMNLISCGSDWDVIR 1101 Query: 513 -----------------------ANGMGAMLDANDALSR----HEWLIAPLLLQGSASPD 545 GM L AL +++I L+ + Sbjct: 1102 KCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSALFGMGYTPDYIIYHELVMTTKE-- 1159 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 + VD + L + P + +A + Sbjct: 1160 -YMQCVTAVDGEWLAELGPMFYSIK-HAGKSRQENRRRAKEEIT 1201 >UniRef50_D1ADU7 ATP-dependent helicase HrpB n=6 Tax=Actinomycetales RepID=D1ADU7_THECD Length = 843 Score = 716 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 310/844 (36%), Positives = 440/844 (52%), Gaps = 53/844 (6%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG----INGKIILLEPRR 58 +LPV +P L AL +L AP G GK+T +PL L G +++++EPRR Sbjct: 14 ALPVRTAIPALRAALHEHGTAVLVAPPGTGKTTLVPLALAGEAGPASPRRSRVLVVEPRR 73 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 A R A+R+A +L E+ G VG+ +R ++ P + +EVVT GVL R +QRDPEL+GV Sbjct: 74 PAVRAAARRMAWMLGEQVGRRVGFAVRGEHR--PGSSVEVVTTGVLLRRLQRDPELAGVD 131 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V+LDE HER L AD ALA LLDV+ LR DL+L+ SAT + + ++L PVV + Sbjct: 132 AVLLDECHERHLDADTALAFLLDVRAALRPDLRLVAASATAEAEPWARLLGG-PVVTAAA 190 Query: 179 RSFPVERRYLPL----------PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 PVE + P + + VA L + G LL FLPGVGEI RV Sbjct: 191 ELHPVEVVWAPPPRPLPPPHGMRVAAQLLEHVAATIRRALAERDGDLLCFLPGVGEIARV 250 Query: 229 QEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 L + L L+G + DQ + A R+VVLAT +AE+SLT+ G+R+VV Sbjct: 251 AALLED-LAPQAELLTLHGRATARDQEAVL--AGGTRRRVVLATAVAESSLTVPGVRIVV 307 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D R R D GL L T RVS+A+ QRAGRAGR PG+ + + R + Sbjct: 308 DSGLAREPRTDHARGLGALTTVRVSKAAAEQRAGRAGRQGPGVVYRCWSAAEHRRLPDRP 367 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQ 407 PEI +DL+ +++ WG D ++ D PP L AA+ LQ +GAL+ R++ + Sbjct: 368 RPEIELADLTAFALQIACWGDPDATGLALPDPPPRAALQAARAALQAIGALDADGRVTDR 427 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSD------LGVAFSRN 461 G++M G PRLA L+ AA+ A+L EPP D R Sbjct: 428 GRRMVHAGVHPRLARALLDGAPLVGRRGAAEAVALLSEPPPAWAGDDLADLLRAARTGRR 487 Query: 462 QPAWQQRSQQLLKRL-----------------NVRGGEADSSLIAPLLAGAFADRIARRR 504 A+ R ++ +RL D + + ++A AF +R+A+ R Sbjct: 488 DAAYTDRWRRETRRLLRVLTGPGEDTGGADGQECGDAGTDETALGTVVALAFPERVAKAR 547 Query: 505 GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 G GRY +A+G GA L A L WL + + A+ ARI LA +D + Sbjct: 548 GA-GRYVMASGTGAELAAGSHLENARWLAIAVADRPPAAASARIRLAAAIDAEVAAVAAA 606 Query: 565 QLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL 624 L+ +++ V W G ++A R ++G + + PLA P ++ +A+ G+R +GLS+L Sbjct: 607 PLLTETEEVAW--RDGDVRARRIRRLGAIELAAVPLADPDPAQVAEALAEGLRREGLSLL 664 Query: 625 NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIY 684 NWT +A LR RL + L + WP V D ++L + L G+ L +D+ Sbjct: 665 NWTPQAVALRERLAFCRRALGD-PWPDVGDAAVLEEVAKRL----HGLRRRADLAGVDLS 719 Query: 685 QALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA 744 LR +L W RL+ P TVP+GSRI I Y + P LAV++QE+FG P +A Sbjct: 720 AVLRDMLPWECAARLEEMAPERITVPSGSRIRIDYRGEQ-PVLAVKLQELFGWRQAPRLA 778 Query: 745 QGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRR 804 GRVPLV+ LLSPA RP +T DL+ FW+ YR V+ E++GRYP+H WP+DPA PTR Sbjct: 779 GGRVPLVVHLLSPAGRPAAVTGDLASFWREGYRAVRAELRGRYPRHPWPEDPATAEPTRH 838 Query: 805 TKKY 808 K Sbjct: 839 AKPR 842 >UniRef50_B4S0B6 ATP-dependent helicase HrpB n=2 Tax=Alteromonas macleodii RepID=B4S0B6_ALTMD Length = 894 Score = 716 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 300/896 (33%), Positives = 432/896 (48%), Gaps = 95/896 (10%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 S LP ++ L ++ ++ AP GAGKST + L + GKI+L++PRR+ Sbjct: 5 FSHLPAYELVTPLKESVAANNI-IIGAPPGAGKST-VLPLSLLQSSLKGKILLMQPRRVV 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 RN+A LA+ LNE G+TVGYR++ ++ P TRLE++TEGVLTRMIQ+DPEL+ V + Sbjct: 63 VRNLADYLAKQLNESVGETVGYRIKGESKTSPATRLEIITEGVLTRMIQQDPELADVTAI 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQM---LPEAPVVIS- 176 + DEFHERS+ +D LAL L+VQ GLRDDL+L++MSATLD LQ + PVV Sbjct: 123 VFDEFHERSIHSDFGLALALEVQTGLRDDLRLIVMSATLDIAPLQALLNEFSALPVVNLN 182 Query: 177 -EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +GR FPV+ RY + + + G +L+FLPG G I V ++ Sbjct: 183 TQGRVFPVDIRYTRDVQAYELVPKTCNIIKQAVSEHDGDILVFLPGRGSINAVAREIKGL 242 Query: 236 IGS-DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 S D+ + LYGALS + Q+ AI P P G RKV+L+TNIAETSLTIEG+ +V+D E Sbjct: 243 AESADIAIHMLYGALSKSAQQDAIAPDPHGRRKVILSTNIAETSLTIEGVTVVIDSLWEN 302 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 A++ P + +T L QR+SQAS TQRAGRAGR+ GI L +K ER A + +I + Sbjct: 303 SAQYHPSSDITALTQQRISQASATQRAGRAGRVMAGICYRLCSKSSFERLAKHNAAQIEK 362 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL------EGERLSAQG 408 DLS L++ WG + P ++ L +P L +A++ L L A+ ++ G Sbjct: 363 EDLSSFLLDTYAWGST-PDTLALLTKPTPAQLNSAQQKLHRLHAVGFDDATGQGSITPYG 421 Query: 409 QKMAALGNDPRLAAML---------VSAKNDDEAATAAKIA------------------A 441 +++A L P LA +L +S K ++ AA A Sbjct: 422 RQVAQLPCQPHLAHLLLTVKSGIEGLSPKENNALKHAAVFVVALSESNMSASGATSVVDA 481 Query: 442 ILEEPPRMGNSDLGVAFSRNQPAWQQRSQQ-------------------------LLKRL 476 +L+ N + A + ++ + L Sbjct: 482 LLQVSGNARNQLIQQASRYVRYVTSSTEREQSFKADINALEEWALGLCIAIAFPLQVGYL 541 Query: 477 NVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD--------ANDALSR 528 VR +++ + + + ++ Q Y+LA+G GA L DA Sbjct: 542 RVRATSGNNASGSGACSKNATAGV-KQSSQLLEYKLASGKGAELATSNSSAFNHGDADDS 600 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 WL I LA V L P+ + + + G ++A R Sbjct: 601 SPWLAVLEGQLI--KNTVVIRLAQAVPESYLRLAFPKAFSEKRSAVLNRDTGQMEARRST 658 Query: 589 QIGQLTVKVQPLAKPS--------EDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA 640 +T+ P++ + + + + LS Q R+ A Sbjct: 659 GFFAITLNSVPVSGQEKIRDNEYWDGAVTEGWFAYLDALPLSQWPLCDADWQWWRRVALA 718 Query: 641 AKWLPEYD--------WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLD 692 K + D WPA L+ + L + +++ L+ L AL L Sbjct: 719 GKLNLQQDKAFDKPDAWPA-SLSELVHKAKESLSAALKSCKNIKSLQQLPWKTALNNGLS 777 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVL 752 W Q L + LP H ++PTG A+ Y E LAV+M EM+ + TIA GRV +V Sbjct: 778 WPQQDALATHLPTHVSIPTGREAALDYRESGDVVLAVKMPEMYSQNGPLTIAGGRVTVVC 837 Query: 753 ELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 ELLSPA RPLQ T DL FW+G+Y+E+QKEMKGRYPKH WPDDPAN PT +TKK Sbjct: 838 ELLSPAGRPLQTTSDLGAFWQGSYKEIQKEMKGRYPKHYWPDDPANAVPTSKTKKR 893 >UniRef50_C6WNJ1 ATP-dependent helicase HrpB n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WNJ1_ACTMD Length = 772 Score = 716 bits (1850), Expect = 0.0, Method: Composition-based stats. Identities = 312/805 (38%), Positives = 434/805 (53%), Gaps = 36/805 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 + LPV AVLPEL+ L +L AP G GK+T +PL L G++++ EPRR+A Sbjct: 3 LPDLPVRAVLPELIETLSGWGAAVLVAPPGTGKTTLVPLAL------EGRVVIAEPRRIA 56 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A LL E G TVGY +R V +TR+EVVT G+L R +Q DPELSGVG V Sbjct: 57 ARAAASRMAALLGEPVGATVGYSVRGDRKVSRSTRIEVVTSGLLVRRLQHDPELSGVGTV 116 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER L ADL LALLLD + GLR DL+LL SAT+ DRL +++ PV+ + R+ Sbjct: 117 VLDECHERHLDADLLLALLLDARAGLRPDLRLLATSATVAADRLAELMGGVPVLTAHART 176 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE ++P ++R + VA A + + G +L+FLPGV EI+RV G D+ Sbjct: 177 YPVELFHVPPQKNERSEAVVARAIRRAVAETPGDVLVFLPGVPEIRRVAALFQ---GGDL 233 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + L+G L+ +Q + ++V+L+T+IAE+SLT+ G+R VVD RV R D Sbjct: 234 RVDVLHGRLTAAEQDAVLRV--GREQRVLLSTSIAESSLTVPGVRAVVDAGLSRVPRVDH 291 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 R GL L T RVS A QRAGRAGR PG + + + EPEI +DL+ L Sbjct: 292 RRGLAGLATVRVSAAVADQRAGRAGREAPGRAYRCWPEHEQSTLPRYPEPEIRSADLTSL 351 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 +EL WG D +SW D PP L AAK +L LGAL R++ +G++M+ALG PRL Sbjct: 352 ALELACWGTPDGEGLSWWDAPPRGALEAAKAVLGNLGALRDGRVTERGERMSALGLHPRL 411 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 A L+ + TA ++ AIL+E + A ++ +L K + Sbjct: 412 ARALLDGGELAGSRTATEVVAILDEDR------GSGEDITGRSADRREVGRLSKLIPAAS 465 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGAMLDANDALSRHEWLIAPLLLQ 539 G D +L+ +A A +R+ARRR Y +A G A L L+ EWL + + Sbjct: 466 GSGDQALV---VALAHPERLARRRAPGSPVYLMAGGTAAELPQGSRLADAEWLAIAVADR 522 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQP 599 ARI LA D VQ P L+ + + + WD G + A R +G + + Sbjct: 523 EPGRIHARIRLAARADEQLAVQAAPALLGEREEIAWD---GDVVARRVRHLGAIPLSTTQ 579 Query: 600 LAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLA 659 L L QA+ G+ +GL +L+W A + R RL + L + WP V D +LL Sbjct: 580 LTGT--AHLQQALRAGLAAEGLGLLSWGPAAVRTRQRLAFLHEVLGD-PWPEVTDAALLP 636 Query: 660 ALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRY 719 ++ + L L L+ + W + D+ P VP+GSRIAI Y Sbjct: 637 LVD------LGNARRKSDLAKLKADHVLQAAMPWPAAAKFDALAPDRLEVPSGSRIAIDY 690 Query: 720 HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREV 779 PP L V++QE+FG PT+A +PLVL LL+PA RP +T DL FW+ Y +V Sbjct: 691 STT-PPTLPVKVQEVFGWTETPTVAG--IPLVLHLLTPAGRPTAVTGDLKSFWQTGYPQV 747 Query: 780 QKEMKGRYPKHVWPDDPANTAPTRR 804 + E++GRYPKH WP+DP P RR Sbjct: 748 RAELRGRYPKHRWPEDPMTAPPARR 772 >UniRef50_C6MXH7 Helicase n=2 Tax=Legionella RepID=C6MXH7_9GAMM Length = 866 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 244/864 (28%), Positives = 396/864 (45%), Gaps = 71/864 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LP+ + ++L + ++++A GAGK+T LP +LL+ + GKI++LEPRR+A+ Sbjct: 16 THLPIDDFIDDILQKVTSHTNLVITAAPGAGKTTRLPPELLS--VVAGKILVLEPRRMAS 73 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 A R+AE N G+ VGY++R N TRL +TE +L R + PEL V +VI Sbjct: 74 IAAAHRVAEENNWLVGEEVGYQVRFVNKTSHKTRLIYMTEALLARHMIHHPELDDVDIVI 133 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDEFHERSL DL L L+ ++Q+ L +K+++MSATL+ +++ + L PV+ G+ F Sbjct: 134 LDEFHERSLYVDLTLGLIRELQE-LGHHIKIVVMSATLEAEKIAEYLGNCPVISVPGKLF 192 Query: 182 PVERRYLPLP----AHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS-RI 236 + RY +F + ++ E RQ +L+FLPG EI+R + L + Sbjct: 193 ELTVRYQKSTQLLTPQYQFYEHLSQVIKEAQRQTDKDILVFLPGAREIERAKGNLLDWKE 252 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + + L+G+L L QR A+ + ++++LATNIAE+S+T++G+ V+D ++ Sbjct: 253 SKKIEVITLHGSLPLEAQRIALQKS--SAQRIILATNIAESSVTLDGVDTVIDSGLVKIM 310 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 + D RTG +RL R+S AS QRAGRA R PG+ + + + PEIL+SD Sbjct: 311 KQDLRTGFSRLEISRISLASAIQRAGRAARQFPGVCYRMWNQHDESSFVKSNIPEILRSD 370 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALG 415 LS L+ L S+ SW ++PP VN+ A LQ GA+ L++ G+++ Sbjct: 371 LSDSLLFLANQHISNFQNFSWFERPPCVNIERATFSLQAAGAIKNNNELTSIGRQLLDFP 430 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKR 475 RL +L++ ++ AAKIAA+L+E + N + R Sbjct: 431 LPLRLGRLLIAGIENNCIDLAAKIAALLQERDILR------KEMANHFQADHFECDVAPR 484 Query: 476 LNVRGGEADSSLIAP----------------------------------------LLAGA 495 L + LL + Sbjct: 485 LKILNKFLKDGSSHEGHFTILQTVAQSYQQILDLAKKLKKAEPPAYLEEDEARQLLLMLS 544 Query: 496 FADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVD 555 F DR+ RRR R + G G L + R E+ IA + S + I A ++ Sbjct: 545 FGDRLCRRRKNSDRALMVGGRGVKLSDRTLVKRSEFFIALNGFEESGEAETLINQASGIN 604 Query: 556 IDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNG 615 + L + + + + ++ + + L ++ + + + + + + Sbjct: 605 KEFLFKHFSDNIIKKRDIIFEAEKSQFYQREFKTLWDLPIEEPNFSLATSVHVAEKLPDI 664 Query: 616 IRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAAL---ETWLLPHMTGV 672 + D S L + +++ P + DE L +L + V Sbjct: 665 LTDNWASTLKKNENLHEWYQKIIFLRFHKALIP-PHIQDE--LESLFDGDALKKSFCLTV 721 Query: 673 HSLRGLKSLDIYQALRGLL--------DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 + L+ L ++ L +ELP VP+GS I I Y Sbjct: 722 FRQACFGESKMTFVLKKNLVYFFELNISETLRSILQTELPNRLKVPSGSMIPIHYSTVEH 781 Query: 725 PALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMK 784 P L VR+QE+FG P I V +VL LL P RP+Q+TRDL FW+ Y E++KE++ Sbjct: 782 PFLRVRIQEVFGWEETPKILFQSVSVVLHLLGPNFRPVQVTRDLESFWQNGYSEIRKELR 841 Query: 785 GRYPKHVWPDDPANTAPTRRTKKY 808 RYPKH WP +PA+ + + Sbjct: 842 IRYPKHQWPLNPADGIAHAKGSRR 865 >UniRef50_Q54NJ4 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 n=19 Tax=Eukaryota RepID=DHX15_DICDI Length = 727 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 171/647 (26%), Positives = 281/647 (43%), Gaps = 68/647 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 LPV + + + V+L TG+GK+T +P ++ I + + +PRR+A Sbjct: 76 ELPVWKQKEDFIKVIKENQVVILVGETGSGKTTQIPQFVVDAGLIRPGKMVGVTQPRRVA 135 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E ++ + G+ VGY +R + T ++ +T+G+L R DP L+ ++ Sbjct: 136 AISVAKRVSEEMDFELGEEVGYSIRFEELSSARTFMKYLTDGMLLRESMSDPTLNKYDVI 195 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HER+L D+ L+ D+ R DLKL++MSATL+ + Q+ AP++ GR Sbjct: 196 ILDEAHERTLSTDILFGLIKDIL-KRRKDLKLIVMSATLEAGKFQKYFENAPLIKVPGRL 254 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA----SRI 236 PVE Y A + AV + +G +L+FL G EI+ ++ R Sbjct: 255 HPVEIFYTEEAAKDYLESAVRTVIDIHTNEGTGDILVFLTGEEEIEDTCAKIQRETRERG 314 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY +L + Q K + RK +++TNIAETSLTI+GI VVD + Sbjct: 315 LPPMKTLPLYSSLPIYQQSKIFDTCKE--RKCIVSTNIAETSLTIDGIVFVVDPGFSKQK 372 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQS 355 ++PR+ + L+ +S+AS QRAGRAGR PG L ++ + Q+ PEIL+S Sbjct: 373 TYNPRSRVESLLVAPISKASANQRAGRAGRTRPGKCFRLYTEKAFKELMIQQTHPEILRS 432 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 +L+ ++++LL+ G D ++D P L+ A +L LGAL+ +L+ G M+ Sbjct: 433 NLASVVLQLLKLGVVDLVHFDFMDPPVPDTLIRALEVLHYLGALDDEGQLTEIGSIMSEF 492 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQLL 473 DP+L+ ML+ + + IAA+L P M D + + ++ L Sbjct: 493 PLDPQLSKMLIVSAERSCSNEILTIAAMLSAPNCFMRPKDNRIEADSAKKSFDHFDGDHL 552 Query: 474 KRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANG------------------ 515 LNV + F + A ++ R QLA Sbjct: 553 TMLNVYHSFKKNGEDPTWCYDNFLNHRAIKQADSVRSQLARILTRFKLPLVSGDVNSKFY 612 Query: 516 -------------------------------MGAMLDANDAL-SRHEWLIAPLLLQGSAS 543 + + L R E+ I + S Sbjct: 613 YENIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGLTRRPEFCIYNEFVLTS-- 670 Query: 544 PDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQI 590 + I V D L++ P +Q + + Sbjct: 671 -ENYIRTITDVKFDWLLELAPSYFKQKS---FPKKTKETIQRAQRLY 713 >UniRef50_B2ANS3 Predicted CDS Pa_6_9920 n=3 Tax=Saccharomyceta RepID=B2ANS3_PODAN Length = 1151 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 180/623 (28%), Positives = 277/623 (44%), Gaps = 79/623 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAA 61 SLPV A +L+ A+ +++ TG+GK+T L L NG I +PRR+AA Sbjct: 503 SLPVFAFREQLINAVRENQVLIVVGETGSGKTTQLTQYLAEAGFTNNGIIGCTQPRRVAA 562 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + + G+ VGY +R ++ P T+++ +T+G+L R I DPEL +++ Sbjct: 563 VSVAKRVSEEVGCRLGEEVGYTIRFEDVTSPATKIKYMTDGMLEREILIDPELGRYSVIM 622 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ ALL + R DLK+++ SATLD D+ + P+ GR+F Sbjct: 623 LDEAHERTIATDVLFALLKKTMKS-RKDLKVIVTSATLDADKFSEYFNACPIFTIPGRTF 681 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P + G +LLFL G EI E L R+ Sbjct: 682 PVEILYSREP------------------EPMGDILLFLTGQEEIDTSCEILFERMKALGP 723 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++++ P+Y AL Q + PAP G RKVV+ATNIAETS+TI+ I V+D + Sbjct: 724 SVPELIILPVYSALPSEMQSRIFDPAPPGSRKVVIATNIAETSITIDHIYYVIDPGFVKQ 783 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 +DP+ G+ LI +SQA QRAGRAGR PG L + + + PEI + Sbjct: 784 NAYDPKLGMDSLIVTPISQAQANQRAGRAGRTGPGKCFRLYTEAAYQSEMLPTTIPEIQR 843 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 +LS ++ L G +D + ++D PPV +L A L LGAL+ L+ G+KMA Sbjct: 844 QNLSNTILMLKAMGINDLIRFDFMDPPPVNTMLTALEELYALGALDDEGLLTRLGRKMAD 903 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P L+ +L+S+ + + I A+L D + + + Sbjct: 904 FPMEPSLSKVLISSVDKGCSDEVVSIVAMLNLSTIFYRPKDKQNQADQKKAKFHDPHGDH 963 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ--------------------- 511 L LNV + F + RR +D R Q Sbjct: 964 LTLLNVYNSWKNHGFSPTWCHENFIQARSMRRAKDVRDQIVKIMNRHRHPIVSCGRETDR 1023 Query: 512 ------------------------LANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPD 545 L G L + AL + EW+I L+ + Sbjct: 1024 VRQALCSGFFRNTARKDPQEGYKTLTEGTPVYLHPSSALFGKQAEWVIYHTLVLTTRE-- 1081 Query: 546 ARILLALLVDIDELVQRCPQLVQ 568 + ++ L+ P + Sbjct: 1082 -YMHFTTAIEPKWLIDAAPTFFK 1103 >UniRef50_C4Y9K0 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y9K0_CLAL4 Length = 1131 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 188/635 (29%), Positives = 288/635 (45%), Gaps = 61/635 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLAA 61 LPV A+ +LL+A+ V++ TG+GK+T + L G I +PRR+AA Sbjct: 466 LPVYAMREQLLSAVRDNQFVIVVGETGSGKTTQIVQYLYEENFHRGDKIIACTQPRRVAA 525 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+A+ + G VGY +R + P TR++ +T+G+L R DP++S +V+ Sbjct: 526 ESVAKRVAQEVGCPLGQEVGYTIRFDDRTSPATRIKYMTDGMLQREALLDPQMSKYAVVM 585 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ ALL + DL++L SATLD D+ + PV+ GR+F Sbjct: 586 LDEAHERTVATDVLFALLKKAARA-NPDLRVLATSATLDADKFSRYFGGCPVLHVPGRTF 644 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PVE Y P A+ + ++SG +L+FL G EI E L +RI Sbjct: 645 PVEIMYSREPEPDYVAAALDCVMQIHVAEDSGDILVFLTGQDEIDTCCEALEARIKTLGR 704 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++L+ P Y AL + Q + PAP G RKVVLATNIAETS+TI+GIR VVD ++ Sbjct: 705 AVPELLVLPAYSALPPDQQARIFEPAPPGARKVVLATNIAETSITIDGIRYVVDPGFVKL 764 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEPEILQ 354 +DPR G+ L+ +SQA QR+GRAGR PG L +E + PEI + Sbjct: 765 NAYDPRLGMDSLVVSPISQAQANQRSGRAGRTAPGKCFRLYTEEAFRTEMRPNTVPEIQR 824 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAA 413 +L ++ L G D + ++D PP + A + L +L AL+ L++ G++MA Sbjct: 825 QNLEHTILMLKAMGIDDVLRFEFMDPPPAPTTVQALKELYVLDALDENGHLTSMGRRMAD 884 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQL 472 +P LA ++++ + A+ + A+L D A + + + Sbjct: 885 FPMEPALAKTVLASVDLSCASDVLSVVAMLSVQNVFYRPKDKQAAADQRKQRFHSVHGDH 944 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM---------------- 516 L LNV G S A F A R + R QLA M Sbjct: 945 LTLLNVFRGWEQSGRSRSWCAENFVQERAMWRAFEVRKQLAAIMVRFRLDVHGSDASAVR 1004 Query: 517 ----------------------------GAMLDANDALSRH--EWLIAPLLLQGSASPDA 546 L + A+ +++I LL + Sbjct: 1005 KAFCAGYFRNSAKRDPHEGIFTTLVDQTPVHLHPSSAVYGKSVDYVIYHTLLLTTKE--- 1061 Query: 547 RILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + +VD LV+ P+ Q SD + + Sbjct: 1062 YMHCVSVVDPKWLVELAPRFFQPSDPNNPSERRKR 1096 >UniRef50_C2CSI0 ATP-dependent helicase n=2 Tax=Corynebacterium RepID=C2CSI0_CORST Length = 758 Score = 713 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 272/812 (33%), Positives = 405/812 (49%), Gaps = 68/812 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL---AHPGINGKIILLEPRR 58 + LPVA E + L + V++ AP G GK+T +P L A +GKI++ PRR Sbjct: 9 AGLPVA----ETIGTLPSSGNVVVQAPPGTGKTTLVPPALANQAAEQDTSGKILVTAPRR 64 Query: 59 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 118 +A R A RL L G +GY +R + G + +E VT GVL R + RDPELSGV Sbjct: 65 VAVRAAANRLQHLS----GQQIGYAVRGDSRHGRD--VEFVTPGVLLRRLLRDPELSGVS 118 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 V +DE HER DL L + L++ Q LRDD +++ MSAT+D R +++ +APV ++E Sbjct: 119 AVAIDEVHERQCDTDLVLGMCLELAQ-LRDDFRVIAMSATVDAQRFSELM-DAPVHVTEA 176 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 ++P++ RY P + A SGS+L+F+PGV E+ V EQL Sbjct: 177 VTYPLDIRYSPAAGRAAGERDFYAHVARQATGHSGSVLVFVPGVREVNLVCEQLPGA--- 233 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 PL+G + +Q A+ ++V+AT+IAE+SLT+ G+R VVD R R Sbjct: 234 ----YPLHGQQTTAEQDAALYTDAD---RIVVATSIAESSLTVPGVRTVVDAGLSRTPRR 286 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 D + G++ L+T S++S QRAGRAGR PG + +++ + + PEIL +DL+ Sbjct: 287 DAQRGMSGLVTVSTSKSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHITPEILSADLT 346 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDP 418 + L WG LDQPP L A R L+ +GA +++A L DP Sbjct: 347 QAALFLECWGAG--EDFPLLDQPPARALADAHRTLRSIGATGD-----VAKQLALLPTDP 399 Query: 419 RLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 RL A L+ A AA A L + PR + +R + L RL Sbjct: 400 RLGAALLK-----YGAGAAHTVAALSDSPR---------GDITRITPPKREVERLARLVP 445 Query: 479 RGGEADSSLIAPLLAGAFADRIARRR--GQDGRYQLANGMGAMLDANDALSRHEWLIAPL 536 G AD ++A AF +R+ARR ++ Y LA+G A + + + WL Sbjct: 446 DKGPADP---GAVVAAAFPERVARRATSAKEAEYLLASGTRARMLED---NGAAWLAVAD 499 Query: 537 LLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVK 596 + +A +A I A +D Q + ++ + G ++ + L+ G + + Sbjct: 500 VSLSNAG-NAIIRAAARID----EQAALCAIGTTEEITATLEGGKVRGRKVLRAGAIELS 554 Query: 597 VQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDES 656 P+ K + +A+ GIRD GL++ +++ +A+ LR RL WP VD+ Sbjct: 555 STPV-KVTGAAAEEALAAGIRDHGLAMFSFSEKAQNLRERLAHLHAHYG-APWPDVDN-- 610 Query: 657 LLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIA 716 A WL P + V + + +D+Y AL+ LL W RLD P VP+G Sbjct: 611 --AEPAEWLGPELHDVAAGKPATKVDMYPALQRLLPWPEATRLDELAPERLPVPSGRDAK 668 Query: 717 IRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAY 776 I + D P +++++QE FG A +P RV LLSPA RPL +T DL+ FW G Y Sbjct: 669 IDWSGDR-PTVSIKLQECFGLAESPVYCGQRV--QFHLLSPAGRPLAVTDDLASFWAGPY 725 Query: 777 REVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 + V+ +M+GRYPKH WP+DP T RTK Sbjct: 726 QGVRADMRGRYPKHPWPEDPWTAPATARTKNR 757 >UniRef50_C1DAE5 HrpA n=2 Tax=Betaproteobacteria RepID=C1DAE5_LARHH Length = 1290 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 200/799 (25%), Positives = 340/799 (42%), Gaps = 87/799 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV ELL A+D V++ TG+GK+T LP L G G I +PRRLAA Sbjct: 74 ALPVNQKRDELLAAIDANQVVIVCGETGSGKTTQLPKLCLQLGRGTRGLIGHTQPRRLAA 133 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+AE L + G VG+++R + + ++++T+G+L Q D L +I Sbjct: 134 RSVASRIAEELGTQIGQGVGFKVRFTDRTSDQSFIKLMTDGILLAETQTDRYLEAYDTLI 193 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D +R + APV+ GR++ Sbjct: 194 IDEAHERSLNIDFLLGYLRQLLP-RRPDLKIIITSATIDAERFSRHFNGAPVIEVSGRTY 252 Query: 182 PVERRYL------PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 PVE RY +DA+ A E+ R SG +L+FLPG EI+ E L Sbjct: 253 PVEVRYRALGEKDEDDRDLAMEDAIVDAVDELARLGSGDILVFLPGEREIRDTAEALRKA 312 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 R+ + PL+ LS +Q + + R++VLATN+AETSLT+ GIR V+D R Sbjct: 313 RLTVRYEVLPLFARLSNEEQNRIFKGS--NGRRIVLATNVAETSLTVPGIRYVIDTGLAR 370 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 + R+ PR + +L+ +++SQA+ QRAGR GR+ G+ + L A++ A ++PEI++ Sbjct: 371 IKRYSPRAKVEQLLVEKISQAAARQRAGRCGRVAAGVCIRLYAEDDFNARPAFTDPEIVR 430 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 S+L+ +++ + + ++D P + +L LGA+ L+ G+++A Sbjct: 431 SNLAAVILRMASLRLGAVVEFPFIDPPSARLIADGYDVLHELGAVSERGELTPLGRELAR 490 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQL 472 + DP++ ML++A++ + + L + PR D A R Q + Sbjct: 491 IPVDPKIGRMLLAARDYHCLREMLVLVSALSIQDPRERPFDAREAAERAQARFADERSDF 550 Query: 473 LKRLNVR-------GGEADSSLIAPLLAGAFADRIARRRGQDGR---------------- 509 L L + + + + L F + R ++ Sbjct: 551 LGFLALWDFFDDALKHKKSNRQLVELCHSHFLSHLRLREWRELHGQLAQIAHDLELRENQ 610 Query: 510 -----------------------------YQLANGMGAMLDANDALS--RHEWLIAPLLL 538 Y A G+ + L + +WL+A L Sbjct: 611 TPATFEQLHKALLTGLLGNLGMKSMEGDDYLGARGIHFHVFPGSGLKKSKPKWLVAGELT 670 Query: 539 QGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKV 597 + S ++ + + LV++ W+ A+G + A R+ + L + Sbjct: 671 ETSRL---YARTVARIEPEWIEPLAMHLVKRHYFEPHWEKARGEVVASERVTLYGLNIVP 727 Query: 598 QP---LAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAV 652 + + E Q + G + + ++L + D V Sbjct: 728 RRTVSYGRIDATEARQIFVREALANGQLHTQAPFFRHNQRLIREVEELEHKARRQDVL-V 786 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLK----SLDIYQALRGLLDWGMQQR----LDSELP 704 D+E+L+A + + + S + D D+ MQ + + P Sbjct: 787 DEETLVAFYDERIPADICDARSFDAWREGAEKADPKLLFLDR-DYLMQHAAEHITEEQFP 845 Query: 705 AHYTVPTGSRIAIRYHEDN 723 P G + +RY + Sbjct: 846 EWLDTPDGR-LRLRYRFEP 863 >UniRef50_Q2LSZ0 ATP-dependent helicase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSZ0_SYNAS Length = 1282 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 203/819 (24%), Positives = 345/819 (42%), Gaps = 105/819 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LP+ A E++ A+ V+++ TG+GK+T LP L GING I +PRR+A Sbjct: 34 ADLPITARRREIVQAIARHRVVVITGETGSGKTTQLPKMCLEAGRGINGIIGCTQPRRVA 93 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A VA+R+AE L + G VGYR+R ++ GP+ + ++T+G+L Q DP L + Sbjct: 94 AVTVAERIAEELGQTVGQAVGYRIRFEDRSGPSPYIRIMTDGILLMETQSDPLLHAYDTI 153 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D L L + + R+DLK++I SAT+D ++ APV+ GR Sbjct: 154 IVDEAHERNLNIDFLLGYLKTLLRK-RNDLKIIITSATIDTEKFAAAFDGAPVIEVTGRV 212 Query: 181 FPVERRYLPLPAHQRFDD-----AVAVATAE--MLRQESGSLLLFLPGVGEIQRVQEQLA 233 +PVE Y P+ ++ A A E R + G +L+F+P +I+ E L Sbjct: 213 YPVEVLYRPIEQGDGDEEITHVEAAVRAVEELRARRSDRGDILIFMPTEQDIRDTCELLE 272 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R ++++ PL+ LS +QR+ +K+++ATNIAETSLTI GIR V+D Sbjct: 273 GRRYENLVILPLFARLSWAEQRRIFSAT--TAQKIIVATNIAETSLTIPGIRYVIDTGYA 330 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 RV++++PRT L + +S++S QR GR GR++ G+ + L +E S PEIL Sbjct: 331 RVSQYNPRTRTNSLPVRAISRSSADQRKGRCGRVQNGVCIRLYEEEDYLNRPQFSVPEIL 390 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE----------- 402 +S+L+ +++ +L+ PA ++D P ++ +L+ LGA+ E Sbjct: 391 RSNLAEVILRMLKLRLGHPAAFPFIDAPNPKSVRDGFEILKELGAISIEKNRNSREEGNG 450 Query: 403 ----RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVA 457 RL+ +G++MA L DPR+A +L+ A+ + A IA+ L + PR D Sbjct: 451 EADVRLTERGRRMARLPMDPRIARILLEAEKEGCVEEATIIASGLCIQDPRERPVDEEGL 510 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEADS-------SLIAPLLAGAFADRIARRRGQDGRY 510 + + L L + + + + R +D Sbjct: 511 ADAAHRVFLDPTSDFLTLLRIWDKYQRAQETLKSQGKMRKYCRVNYLSWRRMREWKDIYE 570 Query: 511 QLA----------------------------------------------------NGMGA 518 Q+ G Sbjct: 571 QIRTIRREEEKADRSISKKLAAAPEDLNAAIHRSILSGYLSGIAVKKEKNIYSATRGREV 630 Query: 519 MLDANDALSRH--EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEW 575 ML L W++A +++ S +A + + + + L + W Sbjct: 631 MLFPGSGLFNSGGNWIVAAEMVETSRL---FARIAANISSEWIEELAGNLCTSTYSEPHW 687 Query: 576 DDAQGTLKAWRRLQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAEA 630 + + + A++++ + L + + A +E + + +G + L + Sbjct: 688 EKRREEVVAYQQVSLFGLVIVPQRKVSYAHIDPEEASRIFVRSALVEGELKTPLPFLLYN 747 Query: 631 EQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGL 690 QL ++ + D + DES+L LP + V +L+ A + Sbjct: 748 RQLVAEVIGMEDKIRRRDL--LQDESVLNDFYASRLPGICNVRTLKRKIREQGGDAFLRM 805 Query: 691 LDWGMQQRLDS-----ELPAHYTVPTGSRIAIRYHEDNP 724 + RL P TV G Y D Sbjct: 806 TPADVLTRLPDEEELSLFPDEVTV-GGRSYRCVYRFDPG 843 >UniRef50_O60231 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 n=75 Tax=Eukaryota RepID=DHX16_HUMAN Length = 1041 Score = 711 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 186/645 (28%), Positives = 280/645 (43%), Gaps = 64/645 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV ELL A+ +++ TG+GK+T +P L N KI +PRR+A Sbjct: 398 SLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVA 457 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A + K G+ VGY +R ++C T L +T+G+L R +P+L+ +V Sbjct: 458 AMSVAARVAREMGVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVV 517 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER+L D+ L+ DV + R +LK+L+ SAT+D R +APV GR Sbjct: 518 MVDEAHERTLHTDILFGLIKDVAR-FRPELKVLVASATMDTARFSTFFDDAPVFRIPGRR 576 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 FPV+ Y P + V + Q G +L+FL G EI+ E L R Sbjct: 577 FPVDIFYTKAPEADYLEACVVSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLG 636 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++L+ P+Y L + Q + P P G RKVV+ATNIAETSLTIEGI V+D + Sbjct: 637 SKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCK 696 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEIL 353 ++PRTG+ L S+AS QRAGRAGR+ G L + + PEI Sbjct: 697 QKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQ 756 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 ++ L +++ L G D +LD PP LL A L LGAL L+ G+KMA Sbjct: 757 RTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMA 816 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRSQ 470 L DP L+ M+++++ + +AA+L D V + + Sbjct: 817 ELPVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGG 876 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN---------------- 514 L LNV A+S + F + RR +D R QL Sbjct: 877 DHLVLLNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY 936 Query: 515 ----------------------------GMGAMLDANDAL--SRHEWLIAPLLLQGSASP 544 + N +L + WL+ L+ + Sbjct: 937 IRVRKAITAGYFYHTARLTRSGYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKE- 995 Query: 545 DARILLALLVDIDELVQRCPQLV--QQSDTVEWDDAQGTLKAWRR 587 + L ++ L++ P ++ + + R Sbjct: 996 --FMRQVLEIESSWLLEVAPHYYKAKELEDPHAKKMPKKIGKTRE 1038 >UniRef50_C4QXH4 DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase n=1 Tax=Pichia pastoris GS115 RepID=C4QXH4_PICPG Length = 1005 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 171/641 (26%), Positives = 279/641 (43%), Gaps = 64/641 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 SLPV ++ LL + V++ TG+GK+T + L G I +PRR+A Sbjct: 350 SLPVFSMKQMLLETVKNNKFVVIVGETGSGKTTQITQYLAEEGFNKGNMIIGCTQPRRVA 409 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R++E + + G VGY +R ++ T+++ +T+G+L R D LS ++ Sbjct: 410 AVSVAKRVSEEVGCRLGQEVGYTIRFEDNTSDVTKIKYMTDGMLQREAMVDKMLSKYSVI 469 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER++ D+ LL RDDLK+++ SATLD+ + P++ GR+ Sbjct: 470 MLDEAHERTIATDVLFVLLKTAAMK-RDDLKIIVTSATLDSGKFSTYFENCPIIQIPGRT 528 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---- 236 FPVE Y P + + + G +L+FL G EI E L ++ Sbjct: 529 FPVEIFYTKEPELDYLQATLECVLSIHKNESRGDILVFLTGQEEIDTCCEVLYEKLIDLH 588 Query: 237 -GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 +++++ P+Y +L Q K P P G RKV++ATNIAETS+TI+GI V+D +V Sbjct: 589 QENELIILPIYSSLPSEMQSKIFEPTPVGKRKVIIATNIAETSITIDGIYYVIDPGFVKV 648 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 +DP+ G+ L+ +SQA QRAGRAGR PG L + + S PEI + Sbjct: 649 NAYDPKLGMDSLMVTPISQAQAKQRAGRAGRTGPGKCFRLYTETGYNKEMLPNSIPEIQR 708 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAA 413 +L+ ++ L G D ++D PP+ +L+A L L AL E L+ G++MA Sbjct: 709 QNLAHTILMLKAMGVQDLIGFEFMDPPPLKTMLSALEELYNLEALTEDGDLTELGRRMAD 768 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS--DLGVAFSRNQPAWQQRSQQ 471 DP LA +L+ + + I ++L +L + + Sbjct: 769 FPMDPGLAKVLIKSIEFGCSEEMLSIVSMLSVQSIFYRPTGELRKKADEKRVRFNHPHGD 828 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG-------------- 517 + LNV + F + R +D R QL M Sbjct: 829 HMTMLNVYEKWVRNGSSKEWCKDNFIHYRSLLRVRDVRTQLKKIMNKYGSEMRSCGQNSN 888 Query: 518 --------------------------------AMLDA---NDALSRHEWLIAPLLLQGSA 542 L S E++I LL + Sbjct: 889 LIRVNLCCGFFKNTAKKDSETSCYKTLLENTTVYLHPSSSLFGKSSSEYVIYHTLLLTTK 948 Query: 543 SPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583 + +++ LV++ P+ ++DT + + + T+K Sbjct: 949 E---YMHCVSVIEPTWLVEQAPRFFAKADTEQVNKRKRTVK 986 >UniRef50_Q21LQ8 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=Q21LQ8_SACD2 Length = 1296 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 210/833 (25%), Positives = 351/833 (42%), Gaps = 104/833 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LP++ ++ + V+L+ TG+GK+T LP L GI G I +PRR+AA Sbjct: 75 QLPISEKRADIAELIANNQVVILAGETGSGKTTQLPKICLELGRGIRGLIGHTQPRRIAA 134 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ L GD VGY++R + V +T ++++T+G+L IQ+DP L +I Sbjct: 135 RTVADRIAQELQVPLGDAVGYQVRFTDHVTDSTLIKLMTDGILLAEIQQDPLLLKYDTLI 194 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLKL++ SAT+D DR + APV+ GR++ Sbjct: 195 IDEAHERSLNIDFLLGYLKQIL-AKRPDLKLIVTSATIDLDRFSKHFNNAPVIEVSGRTY 253 Query: 182 PVERRYLPLPAH-QRFDDAVAVATAEMLRQESG---SLLLFLPGVGEIQRVQEQLASRIG 237 PVE Y P + A+ A E+ G +L+FL G +I+ L Sbjct: 254 PVEVLYRPWHDEFEDLTQAIVNAVEEIQSISKGRGGDVLVFLSGERDIREASHALKKANL 313 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + PLY LSL +Q + P R+VVLATN+AETSLT+ GIR V+D R+ R Sbjct: 314 PHWEIVPLYARLSLEEQNRVFSPHKG--RRVVLATNVAETSLTVPGIRYVIDPGTARIKR 371 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + RT + RL + +SQAS QR GR GR+ G+ + L +E E + ++PEIL+S+L Sbjct: 372 YSLRTKVERLPVENISQASANQRKGRCGRVSDGVCIRLYDREDFESRSEFTDPEILRSNL 431 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGN 416 + +++++LQ D + ++D+P + +LL+ LGA++ R++ G+ + L Sbjct: 432 AAVILQMLQMRIGDVRKFPFVDKPDNRLINDGFKLLEELGAVDKSNRVTKLGRDLQQLPL 491 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKR 475 DP+ M+V+A I + L + PR +D A + L Sbjct: 492 DPKFGRMIVAAAEQGCLRELLIIVSGLTIQDPRERPADKQQAADEKHRRFWDEKSDFLSL 551 Query: 476 LNVR------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA---------------- 513 +N+ E + + L F + + R ++ +QL Sbjct: 552 VNLWHYVEEQRQELSQNQLRKLCQKEFLNFMRLREWRELHHQLRVTIKKMGFKENQEPAS 611 Query: 514 -------------------------------NGMGAMLDANDAL--SRHEWLIAPLLLQG 540 M+ AL R +WL A +++ Sbjct: 612 YDVVHEALLTGLLSNMGNKNEEPDARDYRGTRNRKFMIFPGSALRKKRPKWLFAAEMIET 671 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP 599 S ++ + ++ L++ + +D G +KA+ R+ + L + + Sbjct: 672 SQ---VYAHCVAQMEPEWALKSGAHLLKYNYFEPHYDKRAGQVKAFVRISLFGLVLIEKK 728 Query: 600 ---LAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 +K E + + +G + + L + D VDD Sbjct: 729 RVGYSKIDPAEAREVFIRAALVEGQYRGKGAFFNKNNALIAEVEDLEAKSRRKDI-MVDD 787 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSL------DIYQALRGLLDWGMQQRL-DSELPAHY 707 E L + P + + + D R LL + + +++ P Sbjct: 788 EVLFNFYNEIIPPDICNLAGFEHWRKKLEETQPDALLLSRDLLMLHGAEGVTEAQFPDQL 847 Query: 708 TVPTGSRIAIRYHEDNP-PA--LAVRMQEMFGEATNPTIAQGRVPLV-LELLS 756 G + + YH + P ++V+ VP+ L +LS Sbjct: 848 DF-DGVTLPVSYHFEPGHPQDGVSVK-----------------VPVTLLHMLS 882 >UniRef50_C5KUX0 ATP-dependent RNA helicase DHX8, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KUX0_9ALVE Length = 1239 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 171/627 (27%), Positives = 277/627 (44%), Gaps = 62/627 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 LP+ + +LL A+ +++ TG+GK+T + + +G I +PRR+AA Sbjct: 583 GLPIFKLRSQLLQAMAENQVLIVIGETGSGKTTQMTQYMAEAGYADHGIIGCTQPRRVAA 642 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 VA+R+AE + G VGY +R ++ P TR++ +T+G+L R DP L +++ Sbjct: 643 ITVAKRVAEEYGCRLGQEVGYTIRFEDHTSPETRIKYMTDGMLLREALADPLLKKYSVIM 702 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ L + + R+DLKL++ SATLD ++ + ++ + GR+F Sbjct: 703 LDEAHERTIHTDVLFGLCKEAIRE-RNDLKLIVTSATLDAEKFSRYFFDSHIFTIPGRTF 761 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI----- 236 PVE Y P A+ L ++ G +L+FL G EI + L R+ Sbjct: 762 PVEILYSNEPEEDYVQAALMTVMQIHLTEQPGDILVFLTGQEEIDTACQLLDERMAQLAP 821 Query: 237 --GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++ +Y A Q PAP G RK V+ATNIAE S+TI+GI VVD + Sbjct: 822 MNPPPLIPMGVYAAQPSEVQSSIFEPAPPGSRKCVVATNIAEASITIDGIYFVVDPGFAK 881 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEPEIL 353 + F+ +T + LI +SQA+ QRAGRAGR PG L ++ + PEI Sbjct: 882 IKTFNAKTQMDALIVTPISQANARQRAGRAGRTGPGKCYRLYTEKAFRTEMLPSAVPEIQ 941 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 +S+LS +++ L G +D ++D PPV L+ + L LGAL+ L+ G+KMA Sbjct: 942 RSNLSNVVLTLKAMGINDLLGFDFMDAPPVQTLINSLEALWQLGALDDEGLLTKLGRKMA 1001 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQ 471 P + ML+++ + A A + A+L D + + + Sbjct: 1002 EFPMPPEQSKMLLASVDLGCADEAITVVAMLSVQNVFYRPKDKQAVADQKKSKFNSPEGD 1061 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM--------------- 516 + L V + + AP F + R+ QD R QL M Sbjct: 1062 HVTLLEVYKAWSRNRFSAPWCYENFIQVRSLRKAQDVRKQLIGIMDRYRLEINSCGQDYN 1121 Query: 517 ------------------------------GAMLDANDAL--SRHEWLIAPLLLQGSASP 544 + + AL EW+I L+ + Sbjct: 1122 RLRQAIAAGYFNNLCRRDPNEGYRVMRDLQQVYIHPSSALYQKNPEWVIYYELVMTTRE- 1180 Query: 545 DARILLALLVDIDELVQRCPQLVQQSD 571 I V+ + + + P + +Q+D Sbjct: 1181 --YIREVCTVEPEWMPKIAPNMFKQAD 1205 >UniRef50_A0D4B2 Chromosome undetermined scaffold_37, whole genome shotgun sequence n=4 Tax=Oligohymenophorea RepID=A0D4B2_PARTE Length = 1059 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 162/628 (25%), Positives = 266/628 (42%), Gaps = 65/628 (10%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAAR 62 LPV EL+ L ++ TG+GK+T L L N G I +PRR+AA Sbjct: 317 LPVFHCRSELVQLLHDNRVCIIVGETGSGKTTQLTQYLYEEGYTNTGVIGCTQPRRVAAV 376 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R+AE + + G VGY +R ++ +T ++ +T+GVL R +DP+L VI+ Sbjct: 377 SVAKRVAEEMGVELGSKVGYAIRFEDYTSKDTVIKYMTDGVLLRESLQDPDLEKYSAVIM 436 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ +L V Q R D++++I SAT++ + P+ GR+FP Sbjct: 437 DEAHERSLNTDVLFGILKKVAQRRR-DIRIVITSATMNAKKFSDFFGGVPIYKIPGRTFP 495 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG----- 237 V+ R+ PA A+ ++Q G +L+F+ G +I+ LA + Sbjct: 496 VDVRFEKAPAQDYVRSAIKKTIEVHIQQPPGDVLIFMTGQEDIETTCYLLAEELNKLSEA 555 Query: 238 -SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 +L+ P+Y L +Q + + RK ++ATNIAETSLT++G++ V+D ++ Sbjct: 556 TPPLLILPIYSQLRSEEQARIFEKSE--FRKCIVATNIAETSLTLDGVKYVIDTGYCKMK 613 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQS 355 ++PR G+ L +SQA+ QR GRAGR PGI L + + + PEI ++ Sbjct: 614 VYNPRIGMDALQVTPISQANADQRKGRAGRTGPGICFRLYSSLNYRQDMLENNIPEIQRT 673 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 +L+ +++ L ++ ++D PP +L A L +LGAL+ L+ G+KM+ Sbjct: 674 NLANVVLLLKSLNINNLLDFDFMDPPPQDTILNAMYQLWVLGALDNVGELTELGRKMSEF 733 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLL 473 DP L+ ML+ + ++L P D + L Sbjct: 734 PLDPPLSKMLIKGDQLGCTEEILTVVSMLSVPGIFYRPKDREAESDAAREKLFVGESDHL 793 Query: 474 KRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ---------------------- 511 LNV F + R+ ++ R Q Sbjct: 794 TMLNVFEQWKRHEFSPEWCNEHFVQAKSMRKVREVRAQLKDIAGKLGLKMSTCNFSYDVV 853 Query: 512 -----------------------LANGMGAMLDANDALSR----HEWLIAPLLLQGSASP 544 L GM L + AL ++++ L+ S Sbjct: 854 RKAICSAYFQNAAKIKGVGDYINLRTGMPCKLHPSSALYSLGYAPDYVVYHELVMTSKE- 912 Query: 545 DARILLALLVDIDELVQRCPQLVQQSDT 572 + VD L + P + Sbjct: 913 --YMHCVSAVDPQWLAEMGPMFFSIKED 938 >UniRef50_A2C686 DEAD/DEAH box helicase:Helicase C-terminal domain n=7 Tax=Cyanobacteria RepID=A2C686_PROM3 Length = 853 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 303/854 (35%), Positives = 457/854 (53%), Gaps = 50/854 (5%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN----GKIILLEP 56 M LP+ ++L +L +L + VLL AP GAGK+T +PL L+ + G+I +LEP Sbjct: 1 MGDLPIDSLLTQLCHSLTASATVLLQAPPGAGKTTRVPLALMGALDGHTPLPGRIWMLEP 60 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RRLA + A RLA L E G+ VG+ +R + T+LEV+T+G+ R +Q DP L+G Sbjct: 61 RRLAVKAAASRLAASLKEPLGERVGFAIRHEQLRSKRTQLEVITDGLFLRRLQSDPSLNG 120 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS 176 + VI DEFHER +DLALALLL+ + L +L+LL+MSATL+ LQ LPEA ++ S Sbjct: 121 IDCVIFDEFHERRRDSDLALALLLEARPLLHPELRLLLMSATLNLGELQDRLPEATLLQS 180 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEM---------LRQESGSLLLFLPGVGEIQR 227 EG++FPV + + V A ++L+FLPG EI+R Sbjct: 181 EGKAFPVATHHQTPRPDEPLPHQVMRAIKAHALPLTEASDRTSSRPTVLVFLPGQREIKR 240 Query: 228 VQEQLASRIG-SDVLLCPLYGALSLNDQRKAILPAP-QGMRKVVLATNIAETSLTIEGIR 285 QE LA++ + L L+G L+ Q +A+L A + K+VLA++IAE+SLT+EG+R Sbjct: 241 TQELLAAQESLTHWNLAYLHGQQPLHVQARALLGAESPWIGKIVLASSIAESSLTLEGVR 300 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 LV+D R +RFDP TG+ L T S AS QR GRAGR PG + L + + R Sbjct: 301 LVIDSGLSRQSRFDPNTGMEGLETVPSSLASANQRQGRAGRQSPGQCVRLWSLAEQLRKP 360 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERL 404 + PE+L +D +++EL WG + W+D PP L ++ L L AL R+ Sbjct: 361 EHAPPEVLVADPMPVVLELAAWGAGLGETLPWIDPPPQSALQKGRQQLINLNALKHDGRI 420 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN----SDLGVAFSR 460 + G+ + LG PRL +L+ AK AA A++AA+L + + + SDL Sbjct: 421 TTLGRHLCKLGIHPRLGILLLQAKGWGCAALGAELAALLGDRDPLNSHQVGSDLRTRLDW 480 Query: 461 NQPAWQ------QRSQQLLKRLNVR-------------------GGEADSSLIAPLLAGA 495 + + ++ Q ++RL+ R ++ +L A L+A A Sbjct: 481 LRQDQREIHRSARQGHQQMRRLSQRLLGQLKTIRQDDQYSKQANKDLSEHALAAQLIATA 540 Query: 496 FADRIARRR-GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLV 554 F + +A R G+ G Y+L G GA+L +D L L + + I LA+ + Sbjct: 541 FPEWLALERPGKAGHYRLRQGRGAILRQHDPLRSSPALAVARVDL--GQANTLIQLAIPL 598 Query: 555 DIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLN 614 + + + S++V WD+ ++A R L+IG+L ++ + L +P + + +L+ Sbjct: 599 PMQWVETLSQTDGEWSESVSWDEKSSRIRAERLLKIGELLIQRERLPQPEPEHCRKILLD 658 Query: 615 GIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHS 674 + +GL L W ++QLR RL A + L WP D + L +WL + G HS Sbjct: 659 VLCHQGLGQLPWGRRSQQLRARLELAHRHLG-TPWPPRDLKFLGHQPSSWLNQPLLGCHS 717 Query: 675 LRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEM 734 L L + +AL G L W M+Q LD LP T+P+G + Y D L+V++QEM Sbjct: 718 LDELGEEGLIEALWGELPWEMRQTLDILLPNQLTIPSGRSAVLNY-GDGEVKLSVKLQEM 776 Query: 735 FGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPD 794 FG P + G++P+ LELLSPA R LQ+T DL+ FW +Y++V++EM+GRYPKH WP+ Sbjct: 777 FGCEDGPKLINGKLPVTLELLSPAGRTLQLTTDLAGFWSDSYQDVRREMRGRYPKHPWPE 836 Query: 795 DPANTAPTRRTKKY 808 +P T R KK+ Sbjct: 837 NPRAAQATARIKKH 850 >UniRef50_Q92620 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 n=55 Tax=Fungi/Metazoa group RepID=PRP16_HUMAN Length = 1227 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 169/626 (26%), Positives = 280/626 (44%), Gaps = 62/626 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAAR 62 LP+ AV ELLT + V++ TG+GK+T L L + G I +PRR+AA Sbjct: 532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAM 591 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + G+ VGY +R ++C NT ++ +T+G+L R R+ +L +I+ Sbjct: 592 SVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIM 651 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ LL +V R DLKL++ SAT+D ++ P+ GR+FP Sbjct: 652 DEAHERSLNTDVLFGLLREVV-ARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFP 710 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-----G 237 V+ + P + AV + L G +L+F+PG +I+ +Q+ + Sbjct: 711 VDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENA 770 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y L + Q K AP G+RK ++ATNIAETSLT++GI V+D ++ Sbjct: 771 PALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKV 830 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQSD 356 F+PR G+ L +SQA+ QR+GRAGR PG L + + + PEI +++ Sbjct: 831 FNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTN 890 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 L+ +++ L G D Q ++D PP N+L + L +LGAL+ L++ G+ M Sbjct: 891 LANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFP 950 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 DP L+ ML+ + + ++ I ++L P + + + L Sbjct: 951 LDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLT 1010 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL---------------------- 512 LNV +++ F A R+ ++ R QL Sbjct: 1011 YLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVR 1070 Query: 513 -----------------------ANGMGAMLDANDALSR----HEWLIAPLLLQGSASPD 545 GM L +L ++++ L+ + Sbjct: 1071 KCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKE-- 1128 Query: 546 ARILLALLVDIDELVQRCPQLVQQSD 571 + VD + L + P Sbjct: 1129 -YMQCVTAVDGEWLAELGPMFYSVKQ 1153 >UniRef50_Q9P774 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 n=1 Tax=Schizosaccharomyces pombe RepID=PRP16_SCHPO Length = 1173 Score = 708 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 168/633 (26%), Positives = 279/633 (44%), Gaps = 61/633 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAAR 62 LP AV +LL+ + +++ TG+GK+T L L NG I +PRR+AA Sbjct: 492 LPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAM 551 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + + G TVGY +R ++ GP+T ++ +T+GVL R L ++I+ Sbjct: 552 SVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIM 611 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ + LL V R D+KLL+ SAT+++ + AP GR++P Sbjct: 612 DEAHERSLNTDILMGLLKKVLSRRR-DIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYP 670 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG----- 237 V+ + P + AV L Q +G +L+F+ G +I+ E +A R+ Sbjct: 671 VDIMFAKAPCSDYVEAAVRQVLQIHLSQPAGDILVFMTGQEDIEATCEIIADRLNQLHDA 730 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y + + Q K A G+RKVV+ATNIAETSLT+ GI VVD ++ Sbjct: 731 PRLSILPIYSQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVHGISYVVDTGYCKLKM 790 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQSD 356 ++ + G+ L +SQA+ QRAGRAGR PGI+ L + + PEI +++ Sbjct: 791 YNSKLGIDTLQVTPISQANANQRAGRAGRTGPGIAYRLYTEMAYIREMFETTLPEIQRTN 850 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 LS ++ L G + + ++D+PP L+A+ L LGAL+ +L+ G+KM+ Sbjct: 851 LSNTVLILKSLGVEEISDFDFMDRPPNDTLMASLYELWTLGALDNFGKLTTLGKKMSLFP 910 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 DP L+ +++ A++ I ++L P + + + L Sbjct: 911 MDPSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERAEESDAAREKFNVPESDHLM 970 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA--------------------- 513 LN+ + + F +R +D R QL Sbjct: 971 LLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLESVSDWDIVRR 1030 Query: 514 -----------------------NGMGAMLDANDALSR----HEWLIAPLLLQGSASPDA 546 +GM L +L +++I L+ S Sbjct: 1031 VLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKE--- 1087 Query: 547 RILLALLVDIDELVQRCPQLVQQSDTVEWDDAQ 579 + + VD L + + + Sbjct: 1088 YMNIVTSVDPYWLAEFGGVYYSVKERFRNETES 1120 >UniRef50_Q0S1M3 ATP-dependent helicase hrpA n=5 Tax=Corynebacterineae RepID=Q0S1M3_RHOSR Length = 1296 Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 211/808 (26%), Positives = 343/808 (42%), Gaps = 94/808 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLPV+ ++ A+ V+++ TG+GK+T +P L G+ G I +PRRLAA Sbjct: 68 SLPVSQRRDDIAKAIAENQVVIVAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRLAA 127 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA+R+AE L + G+TVGY +R + V T ++++T+G+L IQRD L +I Sbjct: 128 RTVAERIAEELRSELGETVGYTVRFTDQVSDGTLVKLMTDGILLAEIQRDRMLRRYDTLI 187 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVIS 176 +DE HERSL D L L + R DLK++I SAT+D +R Q AP+V Sbjct: 188 IDEAHERSLNIDFILGYLRQLLP-RRPDLKVIITSATIDPERFAQHFATDDGVPAPIVEV 246 Query: 177 EGRSFPVERRYLPLPAH-------QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQ 229 GR+FPVE RY PL + DAV A E+ + G +L+FL G EI+ Sbjct: 247 SGRTFPVEMRYRPLTVDVGDQTFDRDPVDAVCEAVEELSGEGDGDILVFLSGEREIRDTA 306 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 + L R + PLY LS +Q K P R+VVL+TN+AETSLT+ GIR VVD Sbjct: 307 DALRDRRLRGTEIVPLYARLSAAEQHKVF--TPHTGRRVVLSTNVAETSLTVPGIRYVVD 364 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R++R+ RT + RL + +SQAS QR+GR GR+ GI + L ++E E A +E Sbjct: 365 PGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDFEARPAFTE 424 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER------ 403 PEIL+++L+ +++++ G D A ++ P + LL+ LGA+E + Sbjct: 425 PEILRTNLASVILQMTALGLGDIAAFPFVQPPDPRAVRDGIGLLEELGAIERKAQNEQPV 484 Query: 404 LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQ 462 L+A G+++A + DPR+A MLV A + A I + L + R ++ A Sbjct: 485 LTAVGRELAQIPVDPRMARMLVEAHRNGCLAEVLVIVSALSIQDVRERPAEFQQAADEKH 544 Query: 463 PAWQQRSQQLLKRLNVRG------------------------------------------ 480 + + L L + Sbjct: 545 ARFTVENSDFLAFLELWKYLREQRNELSSNQFRKMCRNEFLHWLRIREWQDLHGQLRQIT 604 Query: 481 ---------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSR--H 529 A + I L I R G + A G + +L + Sbjct: 605 RGLGWDTTDTPAGEAAIHQSLLAGLLSHIGLREGDKRDFLGARGSRFAVFPGSSLFKKPP 664 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRL 588 W++A L++ S ++ ++ + + P LV+++ W +G A+ R+ Sbjct: 665 RWVMAAELVETSRLWA---RMSARIEPEWAEKLAPHLVKRTYSEPHWSSKRGAAMAYERV 721 Query: 589 QIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKW 643 + + + + + + + +G + + L + Sbjct: 722 TLYGIPLVARRAVTYSTIDPETSRDLFIRHALVQGEWQTQHKFFHANRALLEDVEELEHR 781 Query: 644 LPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL------KSLDIYQALRGL-LDWGMQ 696 D VDD++L + + P K+ D+ + ++ Sbjct: 782 ARRRDIL-VDDDTLYDFYDQRVGPEAVSARHFDSWWKVARRKNPDLLTFTQATVVNAESA 840 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNP 724 L E P + + + Y + Sbjct: 841 AVLGGEYPDAWR-QGDMQFPLTYQFEPG 867 >UniRef50_A7BE71 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE71_9ACTO Length = 866 Score = 706 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 301/864 (34%), Positives = 433/864 (50%), Gaps = 67/864 (7%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQ----LLAHPGINGKIILLEPR 57 LPV L ++ A +++AP G GK+T LP L H G++++ +PR Sbjct: 12 PHLPVTRALSDIAAAARPGGCAVITAPPGTGKTTLLPPAVAVALAQHDAAAGRVLVTQPR 71 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AAR A+R+A LL E+ G VGY +R + V TR+E+VT GV R +QRDPEL GV Sbjct: 72 RVAARAAARRIARLLGEEAGGQVGYSVRGDSRVSERTRVEMVTPGVALRRLQRDPELPGV 131 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-----PEAP 172 +I+DEFHER L DLALA LD + LRDDL + + SATL+ R L E Sbjct: 132 SALIIDEFHERDLDTDLALAFALDARSALRDDLFVALTSATLEASRTVDFLRASTGEEPA 191 Query: 173 VVISEGRSFPVERRYLPLP---------------AHQRFDDAVAVATAEMLRQESGSLLL 217 +V G FP+E RY P P + + VA E + GS+L+ Sbjct: 192 LVDIPGDVFPLELRYAPPPRGVEAVGAIGDERVGVRREYLAHVARTVEETVAATEGSVLV 251 Query: 218 FLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAET 277 FLPGVGEI+ V+ L D+ + L+G LS +Q +A+ PA R+V+L+T+IAE+ Sbjct: 252 FLPGVGEIETVRGNLR---LGDIPVLALHGQLSAAEQDRALSPASG--RRVILSTSIAES 306 Query: 278 SLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA 337 SLT+ G+ +VVD R RFD L+ L+T + A + QRAGRA R PGI++ ++ Sbjct: 307 SLTVPGVSVVVDAGLAREPRFDAGRSLSSLVTVPAALARLEQRAGRAARTGPGIAVRVMD 366 Query: 338 KEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLG 397 R AQS P I DL+ ++++ WG ++S LD PP AA + L LG Sbjct: 367 AVDVARRPAQSAPGIATQDLTDARLQVVSWGTP-VEELSLLDAPPAGTWEAAGQRLSSLG 425 Query: 398 ALEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGV 456 A++ +A G+ +A+L +P L L+++ A+ AA+ A+L E R+ +DLG Sbjct: 426 AVDEAGAATALGRTLASLPLEPPLGRALLASSALLGASKAARFVALLSEDLRVPGADLGA 485 Query: 457 -----------------AFSRNQPAWQQRSQQLLKRL---------------NVRGGEAD 484 A + + R ++L +RL +G Sbjct: 486 LERRLGRGGASGAAGTHAQAARVKDTRARLERLAQRLPASAPDDALASVVTERQKGSRTR 545 Query: 485 SSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASP 544 +A A A+ + IARRR Y LA G+GA L L EWL + + AS Sbjct: 546 EDELALTCALAYPEWIARRRAGSAAYILAGGVGAELPQGSPLEGQEWLAVASIDRAPASR 605 Query: 545 DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPS 604 ARIL A+ + ++ + L++ D G L A R +G + +K P + S Sbjct: 606 HARILAAVPLSEEDALAAGAALLETRTQASIDK--GVLTATRTRALGAIPLKSTPASSLS 663 Query: 605 EDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETW 664 EDE + + + +GL L W EA LR R+ L WP V DE+L + W Sbjct: 664 EDEAVALVADHLAARGLGDLGWGKEASSLRERMRVLHDVLGN-PWPDVSDEALACSAHEW 722 Query: 665 LLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 LLP + L ++ + ALR +L W RLD P +P G I + + Sbjct: 723 LLPWAKRLAQGGSLSNVSMLDALRSMLPWPDAARLDELAPEKMPIPAGGTRPIDWSGAH- 781 Query: 725 PALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMK 784 P L +R+Q+ FG P + GRVPLVL L PA RP +T DL+ FW G YR+V+ +++ Sbjct: 782 PVLTLRVQQAFGWTDTPRLVDGRVPLVLHLTDPAGRPAAVTSDLTSFWAGPYRDVRAQLR 841 Query: 785 GRYPKHVWPDDPANTAPTRRTKKY 808 GRYPKH WP+DP + PT R K+ Sbjct: 842 GRYPKHPWPEDPLHAEPTNRAKRR 865 >UniRef50_B5JXZ9 ATP-dependent helicase HrpA n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JXZ9_9GAMM Length = 1300 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 189/753 (25%), Positives = 331/753 (43%), Gaps = 81/753 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LP+ A ++L A++ V+L TG+GK+T LP L G+ G I +PRRLA Sbjct: 69 AQLPIVAARADILKAIEEHQVVVLCGETGSGKTTQLPKLCLELGRGVAGYIGHTQPRRLA 128 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE L + G VG+++R + V + ++++T+G+L Q D L + Sbjct: 129 ARSVAARIAEELKTELGQGVGFKVRFADKVSELSHIKLMTDGILLAETQGDRFLERYDTL 188 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L + + R DLK++I SAT+D +R + +AP++ GR+ Sbjct: 189 IIDEAHERSLNIDFLLGYIKRILP-RRPDLKVIITSATIDPERFSKHFNDAPILNVSGRT 247 Query: 181 FPVERRYLPLPAHQRFDDA-------VAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 +PVE Y PL D+ VA E ++ G +L+FLPG +I+ Q L Sbjct: 248 YPVEVEYRPLVDLDSDDERETSLRQGVADCVDEAMQNGPGDILVFLPGERDIRDTQRFLE 307 Query: 234 SRIGSD----VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 S + PLYG LS +Q++ + G R++VL+TN+AETS+T+ GI V+D Sbjct: 308 KHFASRRGQSADILPLYGRLSNAEQQRIFKSS--GPRRIVLSTNVAETSVTVPGIVFVID 365 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 RV+R+ R+ + RL + +SQAS QR GR GR+ PGI L +++ ++ Sbjct: 366 TGLARVSRYSYRSKVQRLPIEAISQASANQRKGRCGRVAPGICYRLYSEDDFNARPEFTD 425 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE----RLS 405 PEIL+++L+ +++++ + Q +++ P + +LL LGA+ + +L+ Sbjct: 426 PEILRTNLAEVILQMESLRLGEIEQFPFIEAPDSRLISDGYKLLFELGAMSRQGKRHKLT 485 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPA 464 + GQKM+ L DPRLA ML+++ ++ + A L + PR D A Sbjct: 486 SLGQKMSRLPIDPRLARMLMASDRENCLEETLTLVAALSIQDPRERPHDHRQAADEAHQQ 545 Query: 465 WQQRSQQLLKRLNVRGGEAD------SSLIAPLLAGAFADRIARRRGQDGRYQLA----- 513 W+ + LN+ + + + F + R +D R QL+ Sbjct: 546 WRDERSDFIALLNLWRHFNERSRALSQNQLRKWCRENFLSWVRMREWRDTRRQLSDFAKQ 605 Query: 514 ---------------------------------------NGMGAMLDANDALSRH-EWLI 533 L + + +W++ Sbjct: 606 LKLKRNSIEPVYDELHRALLSGLLGNIGLKEDKSEYLGPRNRRFHLFPGSGVRKKVQWVM 665 Query: 534 APLLLQGSASPDARILLALLVDIDELVQRCPQLV-QQSDTVEWDDAQGTLKAWRRLQIGQ 592 A + + S + + L Q L+ ++ + G + A+ + + Sbjct: 666 AAEIFETSR---VFAHTVAEIKPEWLEQYASHLLKKRQFEPHFHRKSGQVMAYEQASLYG 722 Query: 593 LTVKVQP---LAKPSEDELHQAM-LNGIRDKGL-SVLNWTAEAEQLRLRLLCAAKWLPEY 647 L ++ + ++ + E Q + + D L S + QL + Sbjct: 723 LVIRARKRVNYSRINPVESRQIFVRDALADMQLQSEAPFMRHNRQLLEDIAELEAKGRRR 782 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGLKS 680 D +D++ +A E + + + + Sbjct: 783 DLL-LDEQPRIAFFEQRVPQDVGDAATFDRWRK 814 >UniRef50_Q2Y975 ATP-dependent helicase HrpA n=2 Tax=Proteobacteria RepID=Q2Y975_NITMU Length = 1329 Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 191/841 (22%), Positives = 329/841 (39%), Gaps = 122/841 (14%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAA 61 LPV A+ E+ A+ V++S TG+GK+T LP L ++ I +PRR+AA Sbjct: 29 ELPVVALRQEIAQAIQKNQVVIISGETGSGKTTQLPKICLELGWGLHAMIGHTQPRRIAA 88 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A L G VGY++R + V P T ++++T+G+L Q DP L +I Sbjct: 89 RTVAARIASELKSPLGHAVGYKVRFSDKVSPETYVKLMTDGILLAETQGDPNLLAYDTII 148 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLKL++ SAT++++R APV+ GR + Sbjct: 149 IDEAHERSLNIDFLLGYLKQLLP-RRPDLKLIVTSATINSERFSAHFHNAPVIEVSGRMY 207 Query: 182 PVERRYLP---------------------------------------LPAHQRFDDAVAV 202 PVE RY P + A+ Sbjct: 208 PVEVRYRPIEAPARAASAIAEDRNEDKAGNKTRDKDKDRQKDKHKDRDRDEGDIEQAILD 267 Query: 203 ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-------GSDVLLCPLYGALSLNDQR 255 A E+ R G +L+FLPG EI+ E L + + PL+ S DQ Sbjct: 268 AVDEINRCGPGDVLVFLPGEREIRDTAEALRKHAFGGPGTGRAGAEILPLFARQSYADQE 327 Query: 256 KAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQA 315 + P +R++VLATN+AETSLT+ GIR V+D R+ R+ R + +L +++S+A Sbjct: 328 RVFKPGGSSLRRIVLATNVAETSLTVPGIRYVIDTGVARIKRYSYRNKVEQLQVEKISRA 387 Query: 316 SMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQM 375 S QRAGR GR+ GI L +++ ++PEIL+S L+ +++ + Sbjct: 388 SANQRAGRCGRVMSGICFRLYSEQDYLARPEFTDPEILRSSLAAVILRMKSLKIGSIENF 447 Query: 376 SWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 +L+ P + +LL LGA++ L++ G ++A DPR+A M+++AK ++ Sbjct: 448 PFLEPPLPRMIADGYQLLAELGAVDESNTLTSIGWRLARFPIDPRIARMILAAKEENCLT 507 Query: 435 TAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVR-------GGEADSS 486 IA+ L + PR + A R ++Q L L + + + Sbjct: 508 EMLIIASALSVQDPRDRPFERQEAADRAHQSFQDERSDFLGYLKLWDFFDDLLKHKKSNR 567 Query: 487 LIAPLLAGAFADRIARRRGQ---------------------------------------- 506 + F R + Sbjct: 568 KLIEQCQENFLSHRRMREWREVHGQLHTLVVETGFKPNKIPANYDEIHRALLAGLLGNIG 627 Query: 507 -----DGRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDEL 559 D Y G+ + L ++ +W++A L + + +D + Sbjct: 628 FRIDEDNEYLGTRGIKFSIFPGSVLKKAKPKWIVAAELTETTRLYG---RGVAKIDPAWV 684 Query: 560 VQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNG 615 + + ++ W+ + A+ R+ + LTV + + E + + Sbjct: 685 ERIGGKFCKKHYFDPHWEKKSAQVSAFERVTLYGLTVVPKRRVYYGNINPKEAREIFIRS 744 Query: 616 IRDKG--LSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVH 673 G ++ + +L + D VD++ + + + ++ Sbjct: 745 ALVAGEYITQAPFFKHNHELIANVAALEHKTRRPDVL-VDEQEIFVFYDGLIPEGISNGA 803 Query: 674 SLRGLKSLD------IYQALRGLLDWGMQQRL-DSELPAHYTVPTGSRIAIRYHEDNPPA 726 + + + L Q + + P V G +++ Y D Sbjct: 804 AFEKWHREAERENSRLLYIPKEYLMRHTAQSVTEERFPDTMLV-DGFPLSLTYRFDPGHV 862 Query: 727 L 727 L Sbjct: 863 L 863 >UniRef50_A7ASE9 RNA helicase, putative n=1 Tax=Babesia bovis RepID=A7ASE9_BABBO Length = 931 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 169/629 (26%), Positives = 280/629 (44%), Gaps = 65/629 (10%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LP+ ELL A+ P +++ TG+GK+T +P L G GKI +PRR+AA Sbjct: 293 LPIYGYRHELLAAVRNHPILVVVGETGSGKTTQIPQYLYEVGYGKAGKIGCTQPRRVAAM 352 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+A+ + K G VGY +R ++C T ++ +T+G+L R + +P+LS ++++ Sbjct: 353 SVATRVAQEVGTKLGQEVGYSIRFEDCTSNQTVVKYMTDGMLLREMMTEPDLSSYSVMMI 412 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER++ D+ L+ D+ + RDD +L++ SATL+ ++ AP+ GR FP Sbjct: 413 DEAHERTVHTDIIFGLVKDLCR-YRDDFRLIVASATLEAEKFALYFDHAPIFRIPGRRFP 471 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPG----VGEIQRVQEQLASRIG- 237 V+ Y P D +V + Q G +L+FLPG + +Q +L +R Sbjct: 472 VQIYYTKAPEANFLDASVITVLQIHITQPLGDILVFLPGQQEIEEVQEELQNRLRNRGKD 531 Query: 238 -SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 ++++ P+Y L + Q K P P RK +LATNIAETS+T+ I V+DC ++ Sbjct: 532 MRELIVLPVYATLPSDMQAKIFEPTPPNARKAILATNIAETSITLNEIVYVIDCGFCKMN 591 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQS 355 + P+TG+ L+T S+AS QR GRAGR+ PG L K E+ ++PEI +S Sbjct: 592 SYSPKTGMESLVTVPCSKASANQRTGRAGRVRPGHCFRLYTKFSYEKEMDDVNDPEIQRS 651 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAAL 414 +L+ +++ L G D ++D P L+ A L+ LGAL + L+ G++MA L Sbjct: 652 NLAHVVLSLKALGIDDLINFDFMDPPAPETLIKALELIYALGALNDKGELTRTGRRMAEL 711 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRSQQL 472 DP + ML++++ + I A+L D + + + Sbjct: 712 PMDPTYSKMLLASEKYKCSNEIITICAMLGVGNNIFYRPKDKQLHADNAHKNFFRVGGDH 771 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA------------------- 513 L +NV D+ F + RR +D R QL Sbjct: 772 LVLMNVYNQWEDTDFSVAWCYENFVQHKSLRRARDIREQLVELMKRVEVEVISNCNDTDA 831 Query: 514 -----------------------------NGMGAMLDANDALSRHEW--LIAPLLLQGSA 542 N + +L + ++ L+ + Sbjct: 832 ILMAVTAGLFTQAAVRSGPKNNASYRTLKNPQNVDIHPQSSLFDQDAQCVVYTDLVMTTR 891 Query: 543 SPDARILLALLVDIDELVQRCPQLVQQSD 571 + + + + L Q P Sbjct: 892 Q---YMRIVAQIRPEWLSQLAPHYYSSDH 917 >UniRef50_D1ZEJ8 Whole genome shotgun sequence assembly, scaffold_22 n=1 Tax=Sordaria macrospora RepID=D1ZEJ8_SORMA Length = 1177 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 173/645 (26%), Positives = 270/645 (41%), Gaps = 72/645 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLPV A L A+ ++L TG+GK+T +P L G K+ +PRR+A Sbjct: 274 SLPVYAYRDAFLDAIKEYQVLILVGETGSGKTTQIPQYLHEAGYTEGGMKVACTQPRRVA 333 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ + K G VGY +R ++C T L+ +T+G+L R + P L G + Sbjct: 334 AMSVAARVADEMGVKVGREVGYSIRFEDCTSDKTILKYMTDGMLLREMVTSPTLEGYSAI 393 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HER++ D+ LAL+ D+ + R DLKL+I SATL+ ++ +AP+ GR Sbjct: 394 MIDEAHERTVHTDILLALIKDLTRA-RPDLKLIISSATLNAEKFSTYFDDAPIFNVPGRV 452 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS------ 234 PV+ Y P + ++ Q G +L+FL G EI + E++ Sbjct: 453 HPVDVYYTSAPESNYLEASLVTVFQIHATQPEGGILVFLTGQEEIDKACERVEEIKRKLG 512 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 +++ P+Y + Q K P P G RKVV +TNIAETSLTI+GI V+DC + Sbjct: 513 SRVPEIIPLPIYANMPSELQAKIFEPTPPGARKVVFSTNIAETSLTIDGIVYVIDCGYVK 572 Query: 295 VARFDP--RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPE 351 F P TG + L S+A+ QR GRAGR+ PG L K PE Sbjct: 573 ENTFSPVGTTGQSTLAVVPCSRAAANQRMGRAGRVRPGKCFRLYTKFAYLSEMDESPTPE 632 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQK 410 I ++ LS ++++L G D +LD PP L+ + +L LGAL +L+ G++ Sbjct: 633 IQRTSLSSVVLQLKALGIEDLLGFDFLDPPPTELLIKSLNMLYALGALNSAGQLTRVGRQ 692 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQR 468 M +P LA L++A + I ++L E D V + + + Sbjct: 693 MGEFPAEPMLAKALIAATTEGCVDEMLTIVSMLGEVATLFFCPKDKKVHADSARARFTVK 752 Query: 469 S-QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA-------------- 513 L LNV D+ F + + R +D R QLA Sbjct: 753 DGGDHLTLLNVYNQWVDADYSPIWAKENFLTQRSLTRARDVRDQLAKLCDRVLEGSTSTC 812 Query: 514 -----------------------------------NGMGAMLDANDALSR----HEWLIA 534 N M + + + + +I Sbjct: 813 GGVSNMQPILRALTAAFFLNAARLNRGGDGYRTLKNNMTVYVHPSSVVKGMDPPPKVIIY 872 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQ 579 L+ + + + +D L + D + Sbjct: 873 HELVVTTKE---FVRSVIPIDPKWLTEFGGHYYDAKDVESMTAKK 914 >UniRef50_Q75EQ9 AAR020Wp n=2 Tax=Saccharomycetaceae RepID=Q75EQ9_ASHGO Length = 1112 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 166/669 (24%), Positives = 285/669 (42%), Gaps = 78/669 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 SLPV + L++A+ +++ TG+GK+T + L G I +PRR+AA Sbjct: 448 SLPVFKMRETLVSAIRDNQFLVIVGETGSGKTTQITQYLDEEGFSVGGMIGCTQPRRVAA 507 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E + K G+ VGY +R ++ TR++ +T+G+L DP +S +++ Sbjct: 508 VSVAKRVSEEMGCKLGEDVGYTIRFEDQTSRKTRIKYMTDGMLQVEALLDPTMSRYSVIM 567 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ +LL R DL++++ SATLD+++ + + PV+ G++F Sbjct: 568 LDEAHERTVSTDVLFSLLKQAALK-RPDLRVIVTSATLDSEKFSKYFLDCPVIKISGKTF 626 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PV+ Y P + A+ + + G +L+FL EI E L R+ Sbjct: 627 PVDVIYSETPQLDYIEAALDTVMEIHINESPGDILVFLTSQEEIDACCEILYERVQALKE 686 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++L+ P+Y AL Q K P P+G RKV+ ATNIAETS+TI+GI VVD + Sbjct: 687 TIQELLILPVYSALPSEVQSKIFEPTPKGSRKVIFATNIAETSITIDGIYYVVDPGYAKS 746 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 ++P+ G+ +L+ +SQ+ QR GRAGR PG L + R S PEI + Sbjct: 747 NIYNPKIGIEQLVVSPISQSQADQRKGRAGRTGPGKCYRLFTEAAFHREMVPNSVPEIQR 806 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAA 413 +L ++ L G +D ++D PP +++ A L L AL+ + L+ G++M+ Sbjct: 807 QNLEHTILMLKAMGINDLLNFDFMDPPPRSSMVHALEALYNLQALDEDGYLTQLGKRMSQ 866 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPA-WQQRSQQ 471 +P L+ L+++ + I A+L D ++ + Sbjct: 867 FPMEPALSKSLIASVEQGCSDEILTIIAMLSVQNVFYRPKDKIQETRYSKKHGFHHPFGD 926 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANG---------------- 515 L LN+ +++ A F RR +D + QL Sbjct: 927 HLTLLNIHNRWQENNFSKSFCAENFLHERHLRRAKDVKEQLKRIFKNLDLPIRSCHGNVD 986 Query: 516 -----------------------------MGAMLDANDALSRHE--WLIAPLLLQGSASP 544 + + L E ++I L+ S Sbjct: 987 LIRKTLVSGFFRNAAKRDPQVGYKTIVDETAVSIHPSSCLFGKECDYVIYHSLVLTSKE- 1045 Query: 545 DARILLALLVDIDELVQ-------RCPQLVQQSDTVEW---------DDAQGTLKAWRRL 588 + L+D L+ +Q+ + D L + R+ Sbjct: 1046 --YMSQVTLIDRKWLMDNDLPLDTLYDHFRRQARELHLVPLPDTVRSDQDSWRLSSIRQS 1103 Query: 589 QIGQLTVKV 597 + L +K Sbjct: 1104 KERALGIKR 1112 >UniRef50_A9GK92 ATP-dependent helicase HrpA n=2 Tax=Myxococcales RepID=A9GK92_SORC5 Length = 1263 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 195/793 (24%), Positives = 330/793 (41%), Gaps = 79/793 (9%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LP++A + ++ A++ V+++ TG+GK+T LP LA G++ +I + +PRR+AA Sbjct: 42 ELPISARVRDIARAIEAHQVVIVAGETGSGKTTQLPKICLAMGRGLSARIGVTQPRRIAA 101 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA R+A+ L + G VGY++R + P T ++ +T+G++ IQ DP LSG +I Sbjct: 102 TSVAARVAKELGVELGKEVGYKIRFSDRTSPATYVKYMTDGIVLAEIQGDPRLSGYDTLI 161 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DL++++ SATL+ DR APV+ GR++ Sbjct: 162 IDEAHERSLNIDFLLGYLKRLLPK-RPDLRVIVSSATLETDRFAAYFGGAPVIEVSGRTY 220 Query: 182 PVERRYLPLPA--HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 PVE + + + D A G +L+FLPG EI +L Sbjct: 221 PVEVIHRRPESGEAEVADAVAATVEEITSIDPRGDILVFLPGEREIHDTMAELTRHGLPH 280 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 L PLYG L +DQ++ P R++VLATN+AETSLTI GI V+D RV R+ Sbjct: 281 TTLLPLYGRLPQSDQQRVFQSLPG--RRIVLATNVAETSLTIPGIVYVIDSGLARVNRYS 338 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 PRTG+T+L + +S+AS QR GRAGR++ G+ L ++ A ++PEIL+ LSG Sbjct: 339 PRTGVTQLQIEPISRASADQRKGRAGRVQSGVCFRLYDEQDDRARPAYTDPEILRVGLSG 398 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDP 418 +++++ G +LD P + R+L+ LGAL+ L+ G+K+A L DP Sbjct: 399 VILQMKALGLGAIEDFPFLDAPSKRAVDEGYRVLEELGALDDAGELTDIGRKLARLPLDP 458 Query: 419 RLAAMLVSAKNDDEAATAAKIAAIL-EEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLN 477 RL M++ +++ A IAA L + PR ++ + + L Sbjct: 459 RLGRMVLGGESEGALAEVLIIAAALGVQDPRERPLAAQKQADDAHRKFKDEASDFVGLLK 518 Query: 478 VR------GGEADSSLIAPLLAGAFADRIARRRGQDGR---------------------- 509 + G + + F + R D Sbjct: 519 LWSFYQDAQGRLTQNQLRKACRDHFVSYLRMREWADVHRQISRITKEMGFSPNDAPAKGD 578 Query: 510 -----------------------YQLANGMGAMLDANDALSRHE--WLIAPLLLQGSASP 544 Y A L + L++ W++A L++ S Sbjct: 579 AIHRALLPGLLSRIGMWNQENKVYLGARQTRFQLHPSSGLAKKPPAWIMAAELVETSQL- 637 Query: 545 DARILLALLVDIDELVQRCPQLVQQ-SDTVEWDDAQGTLKAWRRLQIGQLTVKVQP---L 600 +A +D + L ++ W + A ++ + L + Sbjct: 638 --FARMAAALDPAWIEAAAGPLCKRSHSDPHWAAKPAAVMAREQVTLYGLPIARDRRVDF 695 Query: 601 AKPSEDELHQAML--NGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLL 658 Q L +R + + + +L + + A D+ +L Sbjct: 696 GAIDPKSARQIFLVHALVRQEYATRAPFMEANRRLFEEVSRLRDKARRSEMLA-DEHALE 754 Query: 659 AALETWLLPHMTGVHSLRGLKS-------LDIYQALRGLLDWGMQQRLDSELPAHYTVPT 711 + + + + + ++ +L +L P + Sbjct: 755 LFFDRRVPEGVYSGKTFEAWRKEAEAEDPRALHLSLADVLLDEAADLTPERFPDSLDL-Y 813 Query: 712 GSRIAIRYHEDNP 724 G+ + + Y D Sbjct: 814 GAAVPLSYRFDPG 826 >UniRef50_C7JEP3 DNA helicase HrpB n=8 Tax=Acetobacter pasteurianus RepID=C7JEP3_ACEP3 Length = 855 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 312/851 (36%), Positives = 440/851 (51%), Gaps = 56/851 (6%) Query: 3 SLPVAAVLPELLTALDCAPQV------LLSAPTGAGKSTWLPLQLLAHPGI--NGKIILL 54 LPV VLPEL L P +L AP GAGK+T +P L A + KII+L Sbjct: 16 GLPVQDVLPELCAVLAQNPTTDHPASAILVAPPGAGKTTSVPPVLAAAAWRAPSDKIIML 75 Query: 55 EPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPEL 114 EPRRLAAR AQR+A L+ E+ G VG+R R ++ V TR+EV+TEG+ R + DP L Sbjct: 76 EPRRLAARAAAQRIASLMGEEVGGFVGFRTRLESAVSDRTRIEVLTEGLFLRRLLGDPML 135 Query: 115 SGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVV 174 GV VILDE HERSL ADLALA LD+Q+ LR DL+L+ MSAT + +RL ++ APV+ Sbjct: 136 EGVACVILDEIHERSLDADLALAFCLDLQRTLRPDLRLVAMSATAETERLAALM-NAPVL 194 Query: 175 ISEGRSFPVERRYLPL--PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 SEGR FP+ + P+ + A A + L + G +L FLPG GEI+RV + L Sbjct: 195 TSEGRMFPLTVHHAKHDIPSLRDIATATATGVRQALAETEGDILTFLPGTGEIRRVMQLL 254 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + PL+G L +Q + + P +G R+V+LAT+IAETSLT+ G+R+VVDC Sbjct: 255 DGV---PATVLPLHGELHPAEQARVLRPGNEGERRVILATSIAETSLTVPGVRVVVDCGF 311 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 RV RFD GL+RL T R+S+A+ QRAGRAGR PG++ L + PEI Sbjct: 312 RRVPRFDAGAGLSRLDTVRISKAAARQRAGRAGREAPGMAYCLWSAHTERALPQHDRPEI 371 Query: 353 LQSDLSGLLMELLQW----GCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQ 407 L++DLS ++ W G +D + DQPP + AAK LL +LGAL+ +++ Sbjct: 372 LEADLSDFVLATALWADTVGSAD-TPLPLPDQPPGSAVAAAKELLILLGALDDAGQITKL 430 Query: 408 GQKMAALGNDPRLAAMLV--------------------------SAKNDDEAATAAKIAA 441 G+ MA LG PRLAAM++ A Sbjct: 431 GRSMADLGTHPRLAAMMLAARTAEEAALAADLAALLEERDPLRPRAAGRGGPPPIPPADI 490 Query: 442 ILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIA 501 L G + A +Q + + R+ ++ A LLA F DRIA Sbjct: 491 TLRLDLIAGEDNNPQADRGALARIRQAAARFRTRMGLKARHPAVGDAAALLAAGFPDRIA 550 Query: 502 RRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQ 561 RG G Y++ANG A L +D L++H+ L L +A A I +A +D + L Sbjct: 551 LCRGDMGSYRMANGSNARLRRDDGLAKHKLLAVAGLHLRTA---AEIRMAAPLDSNALPP 607 Query: 562 RCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL 621 + ++ D G + A RR +IG L ++ + K ++ +L ++ Sbjct: 608 ALLERTREQVETTLDPVSGNIMARRRTRIGCLVLRDRT-EKVKPEDAGPLLLAQAKEAPE 666 Query: 622 SVLNWTAEAEQLRLRLLCAAKWLP----EYDWPAVDDESLLAALETWLLPHMTGVHSLRG 677 + LNW+ +QL+ R+ A E +WP +L ++ WL P++ G S+ Sbjct: 667 TTLNWSDAVKQLQARVELACTLPGGTGMEEEWPDFSSTALAGCMDEWLTPYVEGCTSITA 726 Query: 678 LKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGE 737 L+ LDI LR L + LD ELP P G + Y + P + R Q +G Sbjct: 727 LRELDILNLLRTYLGYARTSWLDKELPTSLPFPGGV-AEVDYTQP-VPVASARAQAFYGT 784 Query: 738 ATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 A P +A GRVPL L LLSPA RP IT DL+ FW+G + +++++M+GRYPKH WP++PA Sbjct: 785 AETPKLAGGRVPLRLALLSPAGRPQAITADLAGFWQGGWADMRRDMRGRYPKHEWPENPA 844 Query: 798 NTAPTRRTKKY 808 R K+ Sbjct: 845 LAPARPRAKRN 855 >UniRef50_B6AI28 Pre-mRNA-processing protein 8, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AI28_9CRYT Length = 878 Score = 701 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 173/675 (25%), Positives = 289/675 (42%), Gaps = 111/675 (16%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 SSLPV E+L++L+ P +++ TG+GK+T +P L G I +PRR+A Sbjct: 197 SSLPVIKYREEILSSLEKYPILIVVGETGSGKTTQIPQYLYEAGYAEKGTIACTQPRRVA 256 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+++ +N + G VGY +R ++C +T+++ +T+G+L R +P+LSG + Sbjct: 257 AMSVANRVSKEMNCRLGSKVGYTIRFEDCTNEDTKIKYMTDGILLREFLSNPDLSGYSCL 316 Query: 121 ILDEFHERSLQADLALALLLDVQQGLR----------------DDLKLLIMSATLDNDRL 164 ++DE HERSL D+ L+ DV + + KL+I SATL+ ++ Sbjct: 317 LIDEAHERSLHTDVLFGLVKDVSKFRNFKDDNLSTKSDCEDSTEPFKLIISSATLEAEKF 376 Query: 165 QQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQES------------ 212 + +P++ GR +PV+ Y P D V L Q Sbjct: 377 GKYFDNSPIIYIPGRRYPVDIYYTKAPEANFIDATVVTVLQIHLSQLKKSNKTEGIIDNN 436 Query: 213 ----------------------GSLLLFLPGVGEIQRVQEQLASRIG------SDVLLCP 244 G +L FLPG EI+ E L ++ ++++ P Sbjct: 437 STIKSLDNIGMNFSRTRIIPTGGDILCFLPGQQEIEECMEMLNKKMLGKGKEVPELIVLP 496 Query: 245 LYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGL 304 +Y +L Q + + PQG RKVVLATNIAET+LTI+ I V+DC + ++P+TGL Sbjct: 497 IYASLPSEQQAQIFISTPQGARKVVLATNIAETALTIDNIGFVIDCGFCKQNSYNPKTGL 556 Query: 305 TRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEPEILQSDLSGLLME 363 L+T S+A+ QRAGRAGR+ PG L K + PEI + +L +++ Sbjct: 557 DSLVTIPCSRAAANQRAGRAGRVRPGKCFRLYTKTSFYMEMEPSNTPEIQRCNLGNVVLM 616 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPRLAA 422 L G D ++D PP L+ A LL L AL+ L+ G+KMA L DP + Sbjct: 617 LKSLGIDDLLHFDFMDPPPPETLVKALELLYGLNALDDKGDLTNIGRKMAELPLDPMYSK 676 Query: 423 MLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG 480 ++++++ + I ++L + D + ++ + L LNV Sbjct: 677 VVLASQRYKVVDESIIIVSMLSLGNTVFIRPRDKSTQADNIRKSFFRSGGDHLTLLNVYK 736 Query: 481 GEADSSLIAPLLAGAFADRIARRRGQDGRYQLA-----------------NGMG------ 517 +S F + +R +D R QL+ +G+ Sbjct: 737 QWENSGESNLWCFENFIHGKSMKRARDIRIQLSELMETLDIEITSNPNEVDGIRKSIAAG 796 Query: 518 ----------------------AMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALL 553 + + +L SR + ++ L+ + + Sbjct: 797 FFFQTARINKGGNYSTLRNCHIVDIHPSSSLFESRPQTVVYTELVHTTKE---YMRNITE 853 Query: 554 VDIDELVQRCPQLVQ 568 + + L + P Sbjct: 854 IKAEWLFEVAPHYYT 868 >UniRef50_A3WLA9 Helicase, ATP-dependent n=1 Tax=Idiomarina baltica OS145 RepID=A3WLA9_9GAMM Length = 832 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 288/836 (34%), Positives = 439/836 (52%), Gaps = 38/836 (4%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA----HPGINGKIILLEP 56 M +LP+ A+ LL A V+ AP GAGKST LPL LLA H G I+LL+P Sbjct: 1 MLNLPIDAIKLSLLERCPGARVVI-EAPPGAGKSTALPLHLLASSALHGDNEGLIVLLQP 59 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RR+AA ++A LAE LNE G T+GY +R + +TRL V+TEG+ TR +Q+DPEL Sbjct: 60 RRVAALSIANFLAEQLNESVGKTIGYSIRGDSKRSQDTRLMVITEGIFTRWLQQDPELHE 119 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP---- 172 + VI DEFHER++ +D L+ LR +L L+IMSATL + L L A Sbjct: 120 ITTVIFDEFHERNIHSD-LSLGLVLDLLPLRPELNLIIMSATLPGEALTTWLTNATEQRF 178 Query: 173 -VVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 ++ + + F ++ Y P +R+ + E + +L+FLPG+ EI+ V+++ Sbjct: 179 ELLSVDVKRFDLDVHYRPPSRLERWLEESVPVIVEAFQHARKGVLVFLPGMREIKYVEQR 238 Query: 232 LASRI-GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 L + G DV + L+G+L+ + Q++ I ++VVLATNIAETSLTIEGI VVD Sbjct: 239 LQETLIGEDVSI--LHGSLTADVQQQVIRA--GASKRVVLATNIAETSLTIEGIDTVVDT 294 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 +ER + + P+ +RL T +++++ QRAGRA R +PG + L +++ +R AA S P Sbjct: 295 GRERQSVYLPQYRDSRLTTAMIAKSNSEQRAGRAARQQPGRAYRLWSEDTQQRLAAYSPP 354 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQK 410 ++ +L+ L++++ WG ++ +++W P + AAK L +G L+ +RL+ GQ+ Sbjct: 355 DVATQELTDLIVQVKAWG-TEVEELNWFTPPDSALVEAAKDTLTDMGLLKEQRLTLAGQE 413 Query: 411 MAALGNDPRLAAMLVSAK---NDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQ 466 +A G D RL+ + + A+ + + A+ A E+P R NSD ++ ++ Sbjct: 414 VAGFGTDIRLSCIALHARGKLPEGKQRALAQWLATYEQPDKRFTNSDSVISAQQHFRNAT 473 Query: 467 QRSQQLLKRLN--------VRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGA 518 R KR R G I + FADRIA + + QLA+G Sbjct: 474 -RGSIWWKRFAYWCQVFSIERQGATQFEDIEEAVLFGFADRIAY-QDRTDEAQLASGARI 531 Query: 519 MLDANDALSR--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWD 576 N +R + IA L R++ L +D L+ + + + W Sbjct: 532 YDLQNSFGNRNNSSYFIATQLSLSEKQRHNRLIGYLSIDKHRLLSHPAVGLVEREVYNWT 591 Query: 577 DAQGTLKAWRRLQIGQLTVKV-QPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRL 635 L G L + Q A + D L+ A+ + +R +GLS + W + L Sbjct: 592 KDGERLIKTSEQMCGALVLDRHQEPAALTRDALNDALTHWLRAEGLSAIGWNSGTAGLLA 651 Query: 636 RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGM 695 RL + PE A + LL L W LP+ G+ SLR L+ +AL L + Sbjct: 652 RLQFLYRARPELFNIAPYETDLLEHLADWALPYWHGMTSLRQLRGWQPNEALLNTLTYEG 711 Query: 696 QQRLDSELPAHYTVPTGSRIAIRY----HEDNPPALAVRMQEMFGEATNPTIAQGRVPLV 751 QQ LD P H+ P+G R+ I Y + P +A+++QE FGE +PT+ G+V + Sbjct: 712 QQLLDKWCPTHWLAPSGRRVIIDYPSGTESERSPKVAIKLQEAFGEVASPTVLNGQVAIA 771 Query: 752 LELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 ++LLSPA R LQ T DL+ FW+ Y+EV+KEM+GRYPKH WPDDP + T +TK+ Sbjct: 772 IDLLSPAGRLLQRTHDLASFWRSGYQEVKKEMRGRYPKHPWPDDPTHAIATVKTKR 827 >UniRef50_P53131 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 n=167 Tax=Eukaryota RepID=PRP43_YEAST Length = 767 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 178/639 (27%), Positives = 275/639 (43%), Gaps = 78/639 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH---PGINGKIILLEPRRL 59 LPV A E L ++ TG+GK+T +P +L N ++ +PRR+ Sbjct: 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV 151 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VAQR+AE ++ K G+ VGY +R +N T L+ +T+G+L R D +LS Sbjct: 152 AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSC 211 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +ILDE HER+L D+ + LL V R DLK++IMSATLD ++ Q+ +AP++ GR Sbjct: 212 IILDEAHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGR 270 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL------- 232 ++PVE Y P D A+ +E+G +LLFL G EI+ ++ Sbjct: 271 TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL 330 Query: 233 -ASRIGSDVLLCPLYGALSLNDQRKAILPAPQ-----GMRKVVLATNIAETSLTIEGIRL 286 + + PLYG+L + Q++ PAP+ RKVV++TNIAETSLTI+GI Sbjct: 331 VREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVY 390 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AA 345 VVD + ++PR + L+ +S+AS QRAGRAGR PG L +E ++ Sbjct: 391 VVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELI 450 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERL 404 QS PEIL+S+LS ++EL + G D ++D P ++ A L L L+ L Sbjct: 451 EQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNL 510 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQP 463 + G+ + DP LA ML+ + + I A+L P + + Sbjct: 511 TPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKN 570 Query: 464 AWQQRSQQLLKRLNVRGGEADSSL----IAPLLAGAFADRIARRRGQDGRYQLAN----- 514 + + LNV I + + + + R QL Sbjct: 571 IFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRY 630 Query: 515 ---------------------------------------------GMGAMLDANDAL-SR 528 ++ + L Sbjct: 631 NLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHD 690 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLV 567 EW+I + S + I V + L++ P Sbjct: 691 AEWVIYNEFVLTSKN---YIRTVTSVRPEWLIEIAPAYY 726 >UniRef50_B8KHJ8 ATP-dependent helicase HrpA n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KHJ8_9GAMM Length = 1254 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 212/797 (26%), Positives = 336/797 (42%), Gaps = 82/797 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 S LPVA E+ AL V+++ TG+GK+T LP L G +I +PRRLA Sbjct: 22 SDLPVAEHRQEIADALREHQVVIVAGETGSGKTTQLPKICLELGRGRLQRIGHTQPRRLA 81 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VAQR+AE + + G+ VGY++R Q +G T ++++T+G+L +QRD +L + Sbjct: 82 ARTVAQRIAEEVGQPLGELVGYQVRFQEILGDRTAVKLMTDGILLSEMQRDRDLRQYDTL 141 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK+L+ SAT+D R + APV+ GRS Sbjct: 142 IIDEAHERSLNIDFILGYLKRLLP-RRPDLKVLVTSATIDVGRFSEHFNGAPVIEVSGRS 200 Query: 181 FPVERRYLP--LPAHQRFDDAVAVATAEML---RQESGSLLLFLPGVGEIQRVQEQLASR 235 +PV YLP + VA E+ G +L+FL G +I+ V QL R Sbjct: 201 YPVTTHYLPRDSSNSEDLLRQVASVVKEVQAGIHGTPGDMLVFLSGERDIRDVARQL--R 258 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + + PLY LS +Q + +VVL+TN+AETS+T+ GIR V+D + R+ Sbjct: 259 GAAGLDVLPLYARLSQGEQARVFGRGSARGLRVVLSTNVAETSVTVPGIRFVIDPGEARI 318 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +R+ RT + RL + VS+AS QR GR GR+ PGI L L +E ++PEI +S Sbjct: 319 SRYSYRTRVQRLPIEPVSRASADQRRGRCGRVGPGICLRLYTEEDYLNRPQFTDPEIKRS 378 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 +L+ +++++LQ G D + +L+ P + RLL LGA+ E+L+ G++MAA Sbjct: 379 NLAAVVLQMLQLGLGDITKFPFLEPPDSRLIRDGYRLLDELGAVNQREQLTRLGRRMAAF 438 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 DP L+ M+++A+ IA+ L + PR +D ++ + + Sbjct: 439 PIDPSLSRMVLAAQEFSVLPEMLVIASALSIQDPRERPADRQAQADQSHARFADPRSDFM 498 Query: 474 KRLNVR------GGEADSSLIAPLLAGAFADRIARRRGQDGR------------------ 509 LN+ + + L + + R +D Sbjct: 499 SLLNLWRYYEEQRQTLSENKLRKLCKREYLSWLRMREWRDVHRQISIACRSQGLKPALEL 558 Query: 510 -----------------------------YQLANGMGAMLDANDALSR--HEWLIAPLLL 538 Y L + R +WL+A ++ Sbjct: 559 APETDYAGVHRALLSGLLGNIAQQDERREYLATRNRRLQLFPGSVVYRKPPKWLVAGEIV 618 Query: 539 QGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKV 597 + A ++ L+Q P L++ W QG + AWR+ + LT+ Sbjct: 619 ETQR---VYARTAASIEPQWLMQVNPALLKHQYYEPRWQREQGRVVAWRKTTLFGLTISD 675 Query: 598 Q---PLAKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAV 652 + AK + ++ G + +L+ + D V Sbjct: 676 RVAVHYAKIDPALCRELLIREALIAGRWTKPPAFLKHNLRLQREVEDLESRARRRDLL-V 734 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLKSLD-----IYQALRGLLDWGMQQRLDSELPAHY 707 D+++L + L H T SL D + R L L P Sbjct: 735 DEDTLFQFYDELLPTHATNTTSLVAWIKEDSNRGTALKLRRDQLLTRDPGALTDAFPDRL 794 Query: 708 TVPTGSRIAIRYHEDNP 724 + Y Sbjct: 795 EW-EDQSYRLSYQFSPG 810 >UniRef50_D1Y978 ATP-dependent helicase HrpB n=3 Tax=Propionibacterium acnes RepID=D1Y978_PROAC Length = 838 Score = 696 bits (1797), Expect = 0.0, Method: Composition-based stats. Identities = 291/834 (34%), Positives = 421/834 (50%), Gaps = 47/834 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LPVAA E+ TAL V++ AP G GK+T++P L +G++I+ +PRR+AA Sbjct: 19 AGLPVAAYRDEITTALHGGRAVIV-APPGTGKTTFVPP--LVASRCSGRVIVTQPRRVAA 75 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R A+RLA L +PG+ + + ++ +T++E VT GVL R + DP+L+GV V+ Sbjct: 76 RAAARRLAALTGTRPGEFASHTVHGESTTTRDTKVEFVTTGVLLRRLLSDPDLTGVDAVV 135 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISEG 178 LDE HER L ADL +A++ +V Q LRDDL ++ MSAT+D+ L APVV Sbjct: 136 LDEVHERHLDADLVVAMVCEVAQ-LRDDLTIVAMSATVDSSGWAAFLGGVEPAPVVEVAS 194 Query: 179 RSFPVERRYLPLPAHQRFDDAVAV---------ATAEMLRQESGSLLLFLPGVGEIQRVQ 229 +E + P V+ + R GS L+F+PG E+ V Sbjct: 195 ALHELEVEWAPAAGAAVESRGVSREFLGHLGTVTVDALDRHTEGSALVFVPGAREVDHVV 254 Query: 230 EQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 L SR+ + + L GA+S +Q A+ P +R+V+++T +AE+SLT+ G+RLVVD Sbjct: 255 ADLRSRLA-GIDVVGLSGAMSAREQDHALS-DPGNVRRVIVSTAVAESSLTVPGVRLVVD 312 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 R R D G+T L+T R S+AS QRAGRA RL PG+++ + + A Sbjct: 313 SGLSREPRLDRGRGMTGLVTVRESRASAVQRAGRAARLGPGVAVRCLRAQDWAGMNADPT 372 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQG 408 PE+ +DL L+ L WG M+ P + AA+ L+ LGA++ R++ +G Sbjct: 373 PEVDHADLVASLLSLAVWGSPRGEGMALPTPLPQDRVAAAEEELRDLGAVDAEGRITVRG 432 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQ------ 462 + +A DPRLA L + A+IAA+L G DL + + + Sbjct: 433 RHLATFPLDPRLARALTDGAAIVGSRRCAEIAAMLGLED--GQVDLVGQWRQLRSGRHPE 490 Query: 463 PAWQQRSQQLLKRLN---VRGGEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGA 518 +R L RL D +A +++ A IAR RG+ Y LA G G Sbjct: 491 AVMWRREADRLARLINDVPPTDITDDDAVATVVSLARPGWIARSRGEGSASYLLACGTGV 550 Query: 519 MLDANDA--LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWD 576 L N L WL + ++ A I A+ + ++ ++ TV WD Sbjct: 551 DLPRNCPPGLLGQPWLAVARTSRITSG--ALIRAAVPLSESAALESGEAMLTSDTTVTWD 608 Query: 577 DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLR 636 G ++ R L++G + + P+ +P L +R GL V + T E LR R Sbjct: 609 --GGKVRGRRVLRLGAIELSSTPV-RPDPVRARHVALEAVRSGGLDVASLTKNGESLRRR 665 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 L A + + WP V DE+LLA E WL + +L + D LRGLL W Sbjct: 666 LALAHRVFGD-PWPDVSDEALLARAEEWL-----DLDALAAGRGSDATSGLRGLLGWRES 719 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNP---PALAVRMQEMFGEATNPTIAQGRVPLVLE 753 RLD +P TVP+GSRI I Y E P LAV++QE FG A PT+ GRV +VL Sbjct: 720 ARLDEVVPETITVPSGSRIRIDYPEPGSDTSPVLAVKLQECFGWADGPTVCDGRVRVVLH 779 Query: 754 LLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LLSPA+RPL +T DL+ FW Y V+ E +GRY KH WP+DP PT+RT + Sbjct: 780 LLSPARRPLAVTDDLASFWASVYPAVRVENRGRYSKHPWPEDPMTATPTKRTNR 833 >UniRef50_A4BTJ3 ATP-dependent helicase HrpA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTJ3_9GAMM Length = 1294 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 213/796 (26%), Positives = 352/796 (44%), Gaps = 86/796 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 ++LP+ E+ AL +++ TG+GKST LP LA G+ G I +PRR+A Sbjct: 78 AALPIMDQRAEIARALSAHQVIVVCGDTGSGKSTQLPQIALASGFGVEGMIAHTQPRRIA 137 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR++A R+AE LN + G VGY++R + V +TRL++VT+G+L Q DP+L+ + Sbjct: 138 ARSLATRIAEELNTEVGAGVGYKVRFSDRVRFSTRLKLVTDGMLLAETQGDPDLAHYDTI 197 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R +LK++I SAT+D R + AP++ GRS Sbjct: 198 IIDEAHERSLNIDYLLGYLKRLLP-RRPELKVIITSATIDPQRFSRYFNGAPIIQIAGRS 256 Query: 181 FPVERRYLPLPAHQRFD------DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 +PVE RY PL + + +A+ A E+ + +G +L+FLP +I+ E L Sbjct: 257 YPVEIRYRPLVSEDEDERDRSLPEAILEALDELAAETAGDVLVFLPSERDIRETAENLRK 316 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + PL+G LS +Q + AP R++VLATN+AETSLT+ GIR VVD R Sbjct: 317 HHPPRTEVLPLFGRLSATEQLRVF--APHDRRRIVLATNVAETSLTVPGIRHVVDSGLAR 374 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++R+ RT + RL + +S+AS QRAGR GR PG+ + L A+ + A +EPEIL+ Sbjct: 375 ISRYSYRTKVQRLPIEPISRASADQRAGRCGREAPGVCIRLYAEADYQVRAEFTEPEILR 434 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAA 413 ++L+ +++++ + + ++D P + +LL LGA+ + L+ G+++AA Sbjct: 435 TNLASVILQMKYLKLGEIERFDFIDPPDSRAIRDGLKLLYELGAVAADNTLTGLGRRLAA 494 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQL 472 L DPR+A MLV+ + + IAA L PR + A Q W+ + Sbjct: 495 LPVDPRIARMLVAGETERALNEVLVIAAALSIPDPRQRPMNAPQAADAAQARWRDQRSDF 554 Query: 473 LKRLNVRGGEAD------SSLIAPLLAGAFADRIARRRGQDGRYQL-------------- 512 L + + + + A F + R +D +QL Sbjct: 555 LALVKLWNDAQEQTRELSQRKLRLWCAEHFLSYVRLREWRDIHHQLRELVMGIGWRENAQ 614 Query: 513 ------------------------------ANGMGAMLDANDALS--RHEWLIAPLLLQG 540 A G+ ++ ++ R W++A L++ Sbjct: 615 QADTAAVHRALLTGLLGNIAWRTDEQHYTGARGLKLLIFPGSGIAKRRPRWIVAAELVET 674 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP 599 S + + + LVQ+ W++ +G + + + + L + + Sbjct: 675 SR---IFARTVGEIRPEWVEPLAAHLVQRRYFEPFWEEKKGRVAGYESVTLYGLPLVARR 731 Query: 600 ---LAKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 + + G + + A QL + D VD+ Sbjct: 732 KIDYTRVDPAAARALFIREGLVYGRLRTQGRFLAHNRQLIAEIEALEAKSRRRDVL-VDE 790 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSEL--------PAH 706 + L A L + S + + L ++ E P H Sbjct: 791 DVLAAFYAERLPADLADGASFERWIRRPEHD--QALFMTPQL-LMEREAVEITADAYPEH 847 Query: 707 YTVPTGSRIAIRYHED 722 +V G R+ +RYH D Sbjct: 848 LSV-GGMRLPLRYHFD 862 >UniRef50_UPI00016C44CB ATP-dependent helicase HrpB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44CB Length = 882 Score = 694 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 277/898 (30%), Positives = 402/898 (44%), Gaps = 116/898 (12%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAAR 62 LP+ LPELL AL + +L APTGAGK+T +P L+ NG +++LEPRR+AAR Sbjct: 6 LPIDDALPELLAALRASGAAVLRAPTGAGKTTRVPPALIDSGLAGNGLVLMLEPRRVAAR 65 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 A+R+A N GDT GY++R TR+ VVT GVL R + DP L GV V+ Sbjct: 66 AAARRMALEDNSPLGDTFGYQVRFDKKSSARTRVLVVTPGVLLRRLHDDPFLDGVAGVVF 125 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DEFHER L+ADLA + +++ +R +L +++MSAT+D + L PVV S+GR+FP Sbjct: 126 DEFHERGLEADLAFGMARLIRENVRPELNVVVMSATVDPSAVSAYLGGCPVVDSQGRTFP 185 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG-SDVL 241 VE RY + AVA A ++L +SG +L FLPG+ EI++ ++L S S L Sbjct: 186 VEVRYRARRSDTPVHTAVADAVRDLLGTQSGDVLAFLPGLREIRQTADELDSFARESGAL 245 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 + PL+G L Q +A+ RKVVLATN+AETS+T++G+ VVD RV F+P Sbjct: 246 VLPLHGDLPPEQQDRALQKL--DRRKVVLATNVAETSVTVDGVTAVVDSGLARVMEFEPS 303 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 G+ RL +++AS QR GRAGR PG+ + L + Q+ PEI + DL G + Sbjct: 304 VGMDRLRLVPIARASADQRTGRAGRTAPGVCVRLWDEPGHRARPEQAAPEIKRVDLCGAV 363 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLA 421 ++L G D + WLD P + + +LL LG L+ G+ A L PRL Sbjct: 364 LQLAALGEPDVRKFPWLDAPTEEAVEQSLKLLDQLGLFVNGALTPLGEIAAGLPVHPRLG 423 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 +L+ + A AA AA+L E R P ++ L Sbjct: 424 RLLLEGQRLGCAPRAALAAALLSERDPFLREFDSGPPVRTAPPTVSDVLDRVEALEAFEA 483 Query: 482 EADSSLIAPLLAGAFADRIARRRGQDGRYQLAN--------------GMGAM----LDAN 523 R + R QLA G G Sbjct: 484 RGRLDGP-----LGRLHRGGAYAVLEVRDQLARLVGKGPPPPNPLPSGRGREGISGTSRE 538 Query: 524 DALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583 +L ++ L L P + + + + P + + Sbjct: 539 SSLLSG---VSKLPLPSGRGPGGGLPSSDDALLQCVFAAYPDRLARRREPG--------- 586 Query: 584 AWRRLQIGQLTVKVQPLAKPSEDELHQAM-------------LNGIRDKGLSV------- 623 + + + +G V++ P + SE EL + +G+ + L Sbjct: 587 STKAVTVGGRGVRLAPASGVSEPELFVCVDVDAGGTDSFVRQASGVEREWLPAERVSTRI 646 Query: 624 -LNWTAEAEQLRLR---------------------------------------------- 636 + + + E+L R Sbjct: 647 EITFDEKTERLAARKATRFGDLLLDELNAHIADESEAASVLARAAAERLEKVLPAPDSPA 706 Query: 637 ------LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGL 690 + C +W+PE D PA + L ALE SL +++ LRG Sbjct: 707 GAFRTRVRCLREWVPELDLPAFEAADLREALEAL----CRNRRSLADVRNGPWLDFLRGC 762 Query: 691 LDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPL 750 L + Q ++SE P H VP+GS I + Y E PP LA R+QEMFG PT+ +GR + Sbjct: 763 LTYQQLQAVESEAPGHLEVPSGSHIQLVYEEGRPPILAARIQEMFGLTETPTVGRGRRKV 822 Query: 751 VLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 +L LL+P RP Q+T DL+ FW+ Y V+KE++ RYPKH WPDDP R K+ Sbjct: 823 LLHLLAPNYRPQQVTEDLASFWRNGYPIVRKELRARYPKHSWPDDPLTAEAVRGAKRR 880 >UniRef50_C0WHI1 ATP-dependent helicase n=4 Tax=Corynebacterium RepID=C0WHI1_9CORY Length = 756 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 258/807 (31%), Positives = 403/807 (49%), Gaps = 60/807 (7%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 + LPVA E + +L V++ AP G GK+T +P L H GK+I+ PRR+A Sbjct: 9 AGLPVA----ETIDSLPHTGNVVIQAPPGTGKTTLVPPALANHSAGRGKVIVTAPRRVAV 64 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R AQRL+ L D VG+ +R ++ G +E VT GVL R + +DPEL GV V Sbjct: 65 RAAAQRLSTLSGTP--DKVGFAIRGESRAGSE--VEFVTPGVLLRRLLKDPELEGVAAVA 120 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER L DL L + L++ + LR+D +++ MSAT+D R Q++ APV +E ++ Sbjct: 121 IDEVHERQLDTDLVLGMCLELTE-LREDFRVIAMSATVDAQRFSQLMG-APVHTTEAVTY 178 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVL 241 P++ +Y P P + A+ ++ S L+F+PGV E+ V E+L Sbjct: 179 PLDIQYAPQPGRAAGSREFYGSIAKQAARQHESTLVFVPGVREVNLVCEELRGHN----- 233 Query: 242 LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 + PL+G + +Q A+ +++V+AT+IAE+SLT+ G+R+VVD RV R D + Sbjct: 234 VFPLHGKQTTAEQDAALYTDE---QRIVVATSIAESSLTVPGVRVVVDAGLARVPRRDAQ 290 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLL 361 G++ L+T S++S QRAGRAGR PG + +++ + + + PEIL +DL+ Sbjct: 291 RGMSGLVTVSTSRSSADQRAGRAGREAPGTVIRCYSQDDYQHFSPHTTPEILSADLTQAA 350 Query: 362 MELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLA 421 + L WG + P L AA+ L+ +GA Q++A L DPR Sbjct: 351 LFLDCWGAGPDFPLLDPP--PAQALAAARATLERIGAT---------QELALLPTDPRQG 399 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 A L+ + A IAA+ + P + A Q+ ++RL+ Sbjct: 400 AALI----RHGSQAAPTIAALADAPTNTTDLTRRPAP-----------QKEIRRLSRLVE 444 Query: 482 EADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGS 541 + + ++A A+ +++A+R G+D Y LA+G A L N L+ WL + + Sbjct: 445 DLGPADPGEVVATAYPEQVAKRVGED--YLLASGTRARLLDNSGLAGSPWLAIAEVTLSN 502 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA 601 A + I A ++ + ++ G ++ + G + + P+ Sbjct: 503 AG-NPIIRTAARIE----ESAALDAIGVTEETRAFLRGGRVRGVKVRAAGAIVLSETPV- 556 Query: 602 KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAAL 661 K + D QA+ GIR++GL + ++ +A+ L+ RL + WP VD A Sbjct: 557 KVTGDAAAQALAAGIREEGLGLFTFSEKAQSLKDRLRHLHAHYGD-PWPEVD----AADP 611 Query: 662 ETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHE 721 WL P + + + +D+Y AL+ LL W RLD P VP+G I + Sbjct: 612 AEWLGPELHQIAAGTPTAKIDMYPALQRLLPWPGATRLDELAPQRLPVPSGRDAKIDWSG 671 Query: 722 DNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQK 781 + P + +++QE FG A +P RV LLSPA RPL +T DL+ FW G Y V+ Sbjct: 672 ER-PVVHIKLQECFGLAESPEYCGNRV--QFHLLSPAGRPLAVTDDLASFWSGPYAGVRA 728 Query: 782 EMKGRYPKHVWPDDPANTAPTRRTKKY 808 EM+GRYPKH WP+DP N T RTK Sbjct: 729 EMRGRYPKHPWPEDPWNAIATARTKNR 755 >UniRef50_B9XI99 Helicase-associated domain protein n=1 Tax=bacterium Ellin514 RepID=B9XI99_9BACT Length = 856 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 229/860 (26%), Positives = 383/860 (44%), Gaps = 76/860 (8%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 SSLP+ + ++ L +++L APTG+GK+T +P +L + KII+L+PRR+A Sbjct: 3 SSLPIWEIHSAIVDQLRTGNRLVLVAPTGSGKTTQVPQMVLDAGLAGDKKIIVLQPRRVA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+A K GD VGY++R + TR+ VTEG+L R +Q + L +G++ Sbjct: 63 ARTVAARVAWERKGKLGDEVGYQIRFDDHTSLGTRICFVTEGILLRWLQENRNLPDIGMI 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE----APVVIS 176 + DEFHER+L +D+ALAL+ +Q R DLK+++MSATLD + + L P++IS Sbjct: 123 LFDEFHERNLLSDVALALVKHLQGTQRPDLKMVVMSATLDAEPVADYLSTDKQPCPILIS 182 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATA-EMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 EG+SFPVE RYL + D A A + E G +L+F+PGVGEI S Sbjct: 183 EGQSFPVEVRYLISHDERPITDQAAEAVEAIVNSGEPGDILVFMPGVGEIHSTINASRSV 242 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 R + PL+G L +Q A P P +RKVV++TN+AETS+TI+GIR VVD R Sbjct: 243 RTNERLAFIPLHGELQPEEQDLAFAPNP--LRKVVVSTNVAETSVTIDGIRHVVDSGIAR 300 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 +AR+D G+ L + +S+AS QR GRAGR PG L + ++ PEI + Sbjct: 301 IARYDSERGIGTLGIEEISRASADQRKGRAGRTAPGTCHRLWTESGHLNRPERNTPEIQR 360 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG--ERLSAQGQKMA 412 SDL+ +++ L A WLD+P + A+ LL+MLGAL+ L+ G +M Sbjct: 361 SDLAEVVLLLHSLHIRKAAAFDWLDKPDAQAVERAENLLRMLGALDESTGELTDIGHRMR 420 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP---RMGNSDLGVAFSRNQPAWQQRS 469 L PR + MLV A +A AA++ R+ D ++ + + Sbjct: 421 RLPMHPRYSRMLVEAAKLGSVRSAGLCAALVSGRDLLQRLRREDKHIS-EARELFEASQE 479 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ------------------ 511 + ++ + + R+ + Q Sbjct: 480 SDFFTLMRAYQFAKKNNFGIETCRRYGINAQSARQVEQTYDQILQIAEQQKLLKPDEQSD 539 Query: 512 ----------------------------LANGMGAMLDANDALSRHEWLIAPLLLQ---G 540 L G L + + + + Sbjct: 540 DTALLRCIMAGFIDQLCIRRDSGSLECDLTEGRHGTLMRESVVQNAPLFVTASIREVPSR 599 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL 600 + + LA V + + Q PQ ++ +D + A + ++ L + + Sbjct: 600 GSENLTLLGLASAVKREWIEQMFPQHIKVQVEHLFDRTHKRVAAVKLIRFCDLVMAHEHQ 659 Query: 601 AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 +++ + R + + E +Q R+ LPE ++P D++++ Sbjct: 660 RDLDPTASGRSLADAYRKDYFELPLFNHELKQFIARVNLVCAVLPELEFPPFDEKAITDC 719 Query: 661 LETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 L G+ ++ ++ + + L LD P + P ++ ++Y Sbjct: 720 ----LSRAFAGMSLVKEAQATHLKEEFSRHLAREQLGWLDELAPLTISWPDDRKLKLQYP 775 Query: 721 EDN--------PPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFW 772 E+ P L V++ E F P I +G++P+ L L +P + ++ T + F Sbjct: 776 EEATTKGGDPIAPELQVKLHECFALKEQPLICEGKLPVRLWLCAPDGKRIESTLNWPTFK 835 Query: 773 KGAYREVQKEMKGRYPKHVW 792 +Y +++ ++ +YP+ W Sbjct: 836 TTSYPKLKSTLQQKYPRVNW 855 >UniRef50_Q47AH6 ATP-dependent helicase HrpA n=7 Tax=Betaproteobacteria RepID=Q47AH6_DECAR Length = 1329 Score = 693 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 198/815 (24%), Positives = 329/815 (40%), Gaps = 99/815 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LPV ++ + V++ TG+GK+T LP L G G I +PRRLA Sbjct: 83 TDLPVNERRADIAELIANNQVVIVCGETGSGKTTQLPKICLDLGIGARGLIGHTQPRRLA 142 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA RLA+ L + G VG ++R + + ++++T+G+L Q DP L+ + Sbjct: 143 ARSVATRLAQELKTQVGAGVGVKIRFHDKSTSESWVKLMTDGILLAESQSDPYLNAYEAI 202 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVIS 176 I+DE HERSL D L L + R DLKL+I SAT+D +R Q APV+ Sbjct: 203 IIDEAHERSLNIDFLLGYLKQLLPK-RPDLKLIITSATIDAERFSQHFSAHGKSAPVIEV 261 Query: 177 EGRSFPVERRYLP------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 GR FPVE RY P + DA+ A E+ R SG +L+FLPG EI+ E Sbjct: 262 SGRLFPVEVRYRPVVDIDKKDDERDLYDAIVDAADELSRLGSGDILVFLPGEREIREAAE 321 Query: 231 QLASRIGSDV--------LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 L + + PL+ LS DQ + P+ G R++VLATN+AETSLT+ Sbjct: 322 ALRKHALARPGLSSAHAPEILPLFSRLSAGDQDRIFKPS-GGQRRIVLATNVAETSLTVP 380 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GIR V+D RV R+ R + +L + +SQA+ QRAGR GR+ G+ + L + Sbjct: 381 GIRYVIDTGLARVKRYSYRNKVEQLQVEPISQAAARQRAGRCGRVAAGVCVRLYDEADFN 440 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE 402 A ++PEIL+S L+G+++ + +D +++ PP + LLQ LG L+ + Sbjct: 441 ARAPFTDPEILRSSLAGVILRMKSLKLTDVESFPFIEPPPAKAISDGYALLQELGGLDDD 500 Query: 403 -RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL-EEPPRMGNSDLGVAFSR 460 RL+ G +A L DPR+ MLV+A++ IAA L + PR + A Sbjct: 501 NRLTKVGDALAKLPLDPRIGRMLVAARDLGCLKEVLIIAAGLSTQDPRERPQERQQAADE 560 Query: 461 NQPAWQQRSQQLLKRLNVRGGEAD-------SSLIAPLLAGAFADRIARRRGQDGR---- 509 + + L + + G + + + F + R ++ Sbjct: 561 KHKQFADEKSEFLSWVKLWGWFQNVVEHKKSNKQLIDNCHAHFLSYLRLREWREVHGQLH 620 Query: 510 -----------------------------------------YQLANGMGAMLDANDALSR 528 Y A G+ ++ + L + Sbjct: 621 AMVTELGWKENDLPGTFDAIHQALLTGLLGNIGCKSDESGYYLGARGIRYLIHPSSPLQK 680 Query: 529 H--EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAW 585 +W++A + + + ++ D + + L+++ W+ + W Sbjct: 681 KAGKWIMAAEITETTRLFG---RCVARIEADWIEKVGAHLIKRQYFDPHWEKKSMQVAGW 737 Query: 586 RRLQIGQLTVKVQP---LAKPSEDELHQAML------NGIRDKGLSVLNWTAEAEQLRLR 636 R + + + + + E + + I + + ++ Sbjct: 738 ERTTLYGIVINPKRRIHYGPLAPAEAREIFIRQGLVGEEIDESFAKCWPFFQHNQKQIRD 797 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQ---ALR----G 689 + D VDDE + + + + + + + L Sbjct: 798 IEKIEHKQRRQDVL-VDDELIFGFYDHLIPEGIHNGATFDHWRKTAEQENPKLLFLSKDD 856 Query: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 L+ P H V G + YH + Sbjct: 857 LMRHSAAGVTTEAFPHHIKV-GGVEYGLTYHFEPG 890 >UniRef50_C4QXR9 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4QXR9_PICPG Length = 967 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 157/631 (24%), Positives = 263/631 (41%), Gaps = 68/631 (10%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP V +L+ + V++ TG+GK+T L L G I +PRR+AA Sbjct: 295 LPAFTVREDLIRTIRENQIVVVIGETGSGKTTQLTQFLYEEGFYKRGIIGCTQPRRVAAM 354 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + K G+ VG+ +R ++ P T ++ +T+GVL R D L +I+ Sbjct: 355 SVAKRVSEEMGVKLGNEVGFTIRFEDRTSPRTMIKYMTDGVLLRETLLDSGLEKYSCIIM 414 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ L L + R DL+L+I SAT++ R + A GR+FP Sbjct: 415 DEAHERSLNTDILLGLFKKILTKRR-DLRLIITSATMNASRFSEFFGNADTFTIPGRTFP 473 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI------ 236 V+ ++ P D A+ ++ G +L+F+ G +I+ + L RI Sbjct: 474 VDIQFSKYPVADYVDAAIKQVLKIHYGKKPGDILVFMTGQEDIEATCQVLQERIEEIEED 533 Query: 237 ---GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + + + P+Y +L + Q K + +RK ++ATNIAETSLT++GI VVD Sbjct: 534 AENKNPLSILPIYSSLPADLQAKVFGRSE--VRKCIVATNIAETSLTVDGIVFVVDAGLC 591 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA-KEQAERAAAQSEPEI 352 ++ + + G+ L +S A QR+GRAGR PG++ L E + Q PEI Sbjct: 592 KLKVYSSKLGMDILQLAPISFAQANQRSGRAGRTGPGVAYRLYTLTEAEKEMYVQPIPEI 651 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKM 411 +++L+ L+ + G + ++D PP + ++ L L A++ L+ G KM Sbjct: 652 QRTNLANTLLLIKSLGVDNLLDFPFIDPPPHATIYSSLYDLWCLDAIDNLGALTDLGHKM 711 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQ 470 + +P L+ ML+ + + I A+L P + R++ + Sbjct: 712 TSFPMEPVLSKMLIKSHEFKCSTEMCIIVAMLSVPNVFYRPKERQKESDRSRERFFIPES 771 Query: 471 QLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG------------- 517 L LNV + A F + RR Q+ QL + M Sbjct: 772 DHLTLLNVYNQWLNHRNSARWCVQNFLHEKSLRRAQEIELQLQSIMMQQGMACRSIGRQW 831 Query: 518 --------------------------------AMLDANDALSR----HEWLIAPLLLQGS 541 +L +L E+++ LL S Sbjct: 832 DPIQECICSCLFVNAARFKKFGEYTNLRSVMSMVLHPTSSLYGTADLPEYVVFQELLLTS 891 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQSDT 572 + + V + L + Sbjct: 892 RE---YMNVVTAVKPEWLAKYGSVFYSARSD 919 >UniRef50_A3FQE8 Putative uncharacterized protein n=2 Tax=Cryptosporidium RepID=A3FQE8_CRYPV Length = 867 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 172/667 (25%), Positives = 273/667 (40%), Gaps = 100/667 (14%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 +SLPV +++ +L+ P +++ TG+GK+T +P L NG I +PRR+A Sbjct: 198 NSLPVVKFKEQIIKSLEEHPILIVVGETGSGKTTQIPQYLFEAGYYKNGIIACTQPRRVA 257 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ + + G VGY +R ++C T ++ +T+G+L R +P+L + Sbjct: 258 AMSVAARVAKEMGSRLGGLVGYSIRFEDCTSEETVVKYMTDGILLREFLSEPDLKNYSCI 317 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDD-----------------------LKLLIMSA 157 ++DE HERSL D+ L+ DV + D KL+I SA Sbjct: 318 LIDEAHERSLHTDILFGLVKDVSRFRNSDIYLENDIGKNGKIEGCANYNKNPFKLIISSA 377 Query: 158 TLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQES----- 212 TL+ ++ + AP++ GR FPV Y P D V Q Sbjct: 378 TLEANKFSEYFDNAPIIYIPGRRFPVNIYYTKSPEANFIDGTVVTVLQIHFSQIKRSNEN 437 Query: 213 ----------GSLLLFLPGVGEIQRVQEQLASRI------GSDVLLCPLYGALSLNDQRK 256 G +L FLPG EI+ Q L SR+ ++++ P+Y +L Q K Sbjct: 438 MSSKKIIPVGGDILCFLPGQQEIEEAQALLESRLVNKDPNLPELIILPIYSSLPSEQQAK 497 Query: 257 AILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQAS 316 P G RKVVLATNIAET+LT++ I VVDC + ++P+TGL LIT SQA+ Sbjct: 498 IFQTTPYGFRKVVLATNIAETALTVDNIGFVVDCGFCKQNSYNPKTGLESLITVPCSQAA 557 Query: 317 MTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQM 375 QR+GRAGR+ PG L K + PEI + +L ++ + G D Sbjct: 558 ANQRSGRAGRVRPGKCFRLYTKLSFTTEMEVSNVPEIQRCNLGNAVLVIKSLGIDDLLHF 617 Query: 376 SWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 ++D PP L+ A LL LGAL+ L+ G+ MA L DP M+++++ Sbjct: 618 DFMDPPPPETLIRALELLYSLGALDDKGELTKVGRTMAELPIDPMHGKMVLASQKYSVVN 677 Query: 435 TAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLL 492 A I ++L + + + A+ LL LNV + Sbjct: 678 EATTIVSMLSVGNSIFIRPKEKAKQADSIRKAFTVHGGDLLTLLNVYNQWQSNDFSGYWC 737 Query: 493 AGAFADRIARRRGQDGRYQ--------------------------------LANGM---- 516 F + ++ +D + Q L + Sbjct: 738 YDNFLQVKSLKKARDIKTQIDSLLSEKLDIQISSNPNELEYIRKAITAGFFLQSARINKG 797 Query: 517 ----------GAMLDANDALS--RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 + + L + + L+ + + + D L++ P Sbjct: 798 GNYTTIKWRHIVDIHPSSTLFNLKPSAITYTELVLTTKE---YMRNLTEIKTDWLLEVAP 854 Query: 565 QLVQQSD 571 D Sbjct: 855 HYYHTDD 861 >UniRef50_Q2G8M4 ATP-dependent helicase HrpB n=5 Tax=Sphingomonadales RepID=Q2G8M4_NOVAD Length = 817 Score = 692 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 311/819 (37%), Positives = 451/819 (55%), Gaps = 23/819 (2%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 MS LP+ +VLP+LL AL +L AP GAGK+T + LLA P G++I+L PRR+A Sbjct: 1 MSDLPIHSVLPDLLAALRQRESAVLIAPPGAGKTTAVAPALLAEPWCTGQVIVLSPRRVA 60 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A+R+AE+L E+ G T+GY R + TR+ VVTE + I DPELSGV V Sbjct: 61 ARAAAERMAEMLGEEAGGTIGYVTRLDSRRSARTRVLVVTEAIFVATILDDPELSGVSAV 120 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 + DE HER L +DL LAL ++ Q LR+DL++++MSAT+D R +L +APV+ SEG++ Sbjct: 121 LFDEAHERHLDSDLGLALAVEAQGVLREDLRIVVMSATIDGSRFAALLGDAPVIESEGKA 180 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 P+ R+L + + A+A A R+E G +L FLPGV +I+R E LA R+ + Sbjct: 181 HPLAIRWLGARPDAKVEVAMASAIQTAWREEEGDILAFLPGVAQIERTAETLAERLPQAL 240 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G + QR AI P G R++VLAT IAETSLT++G+ +VVD R A FD Sbjct: 241 -ILPLHGQVEPGGQRAAIRRDPSGRRRIVLATAIAETSLTLDGVSVVVDAGLSRRAEFDK 299 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 G+TRL+T R SQAS QRAGRA R PG++ L + A PE++ SDL+ L Sbjct: 300 AAGVTRLVTTRASQASAAQRAGRAARQGPGVAYRLWEEASHAGRPAFDPPEMVTSDLAPL 359 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGNDPR 419 + L QWG DPA M+WLD PP + AA+ L LGAL+ R++ G+ MA L +P Sbjct: 360 ALTLAQWGAGDPATMAWLDPPPAAAMAAAQGALAALGALDKDRRITTHGRAMAKLPMEPA 419 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEP-------PRMGNSDLGVAFSRNQPAWQQRSQQL 472 LA ML+ A +A AA++A +L+E D + ++ ++ Sbjct: 420 LAHMLLFAAERGQAEEAARLALLLQERGLGGRGEDLARRLDRWASERGSRAEASRKLAGR 479 Query: 473 LKRLNVR---GGEADSSLIAPLLAGAFADRIARRRGQDGRYQL-ANGMGAMLDANDALSR 528 R+ R G A LLA AF DRIAR R G L + G G LD L+ Sbjct: 480 WARMAERLAPRGRAGEVPTGVLLAEAFPDRIARARSVSGEEWLSSGGRGYRLDPASPLAT 539 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRL 588 WL+ + ARI A ++ ++ + V++ T+ W+ A G ++A Sbjct: 540 ARWLVIGDAQGEAKG--ARITAAAALEESDVTRHLAHRVEERHTLSWNAADGRVEARLER 597 Query: 589 QIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYD 648 ++G + + P P + + +++ +R +GL +L A+ L +R A Sbjct: 598 RLGAIVLARVPDPAPDAEAAARLLIDEVRSRGLDLLPLGEGAKALLVRAGHAGLAALSDA 657 Query: 649 WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYT 708 +LL LE WLLP + G L + + ++ AL G LDW +Q LD PA + Sbjct: 658 -------ALLDDLEAWLLPLVKGRRDLA-VGAGRLHDALLGRLDWNERQMLDKLAPAEFR 709 Query: 709 VPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDL 768 P G+ AI Y + P + +R+Q +FG +P + Q PL+L L SP +P+Q T DL Sbjct: 710 SPAGTSHAIDYGHEGGPCVELRVQALFGIDRHPCVGQPPRPLLLSLTSPGGKPIQTTADL 769 Query: 769 SDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 FW+G++++V K+MKGRYPKH WPD+P + P+ +TK Sbjct: 770 PGFWRGSWKDVCKDMKGRYPKHRWPDEPWSEDPSLKTKN 808 >UniRef50_C7RBD8 ATP-dependent helicase HrpA n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBD8_KANKD Length = 1311 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 185/802 (23%), Positives = 342/802 (42%), Gaps = 87/802 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 +LPV ++ A++ V+++ TG+GK+T LP L G+ GKI +PRR+AA Sbjct: 93 ALPVCQARDDVRKAIEENQVVVIAGETGSGKTTQLPKICLQLGLGVYGKIGHTQPRRVAA 152 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE L + G+ VGY +R + T + V+T+G+L I DP L +I Sbjct: 153 TSVARRIAEELKSELGELVGYSIRFNDQSSAVTPVRVMTDGILLNEITHDPLLRQYDTII 212 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVISE 177 +DE HERSL D L + ++ R DLK++I SAT+D +R + AP++ Sbjct: 213 IDEAHERSLNIDFLLGYIRNILPK-RPDLKVIITSATIDVERFSKHFAIDGKPAPILEIS 271 Query: 178 GRSFPVERRYLPLPAHQR--FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GR++PV+ Y P + + A E++ G +L+FL G EI+ + L Sbjct: 272 GRTYPVDVWYRPDDEENPSPQVERIGHALDELMSFAPGDILIFLSGEAEIRETAKFLRKE 331 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + PLY LS+ +Q K P+ G R+++L+TN+AETS+T+ GIR V+D R+ Sbjct: 332 RFEGCEVLPLYARLSMREQEKIFHPS-GGKRRIILSTNVAETSVTVPGIRFVIDPGFARI 390 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +R+ R + RL +++SQAS QR GR GR+ G+ + L +E ++ EIL++ Sbjct: 391 SRYSVRNKIQRLPIEKISQASANQRKGRCGRVADGVCIRLYEEEDFLNRPEFTDAEILRT 450 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAAL 414 +L+ +++++ Q G D ++D+P + LL L A++ ++L+ G+KMA L Sbjct: 451 NLAAVILQMKQLGLGDIEAFPFIDEPAAKQISDGLNLLSELQAVDGKKQLTNIGRKMARL 510 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 +PRLA +L++A+++ A +AA L PR + + ++ + Sbjct: 511 PIEPRLARILLAAEDESCIREALILAAFLSVKDPREWPFEKRELAQQKHAKYKHPQSDFI 570 Query: 474 KRLNVR------GGEADSSLIAPLLAGAFADRIARRRGQDGR------------------ 509 +N+ + ++ + A R + Sbjct: 571 AIINLWDHLHKQQEDLSNNAFRRYCQEELVNFNAYREWRSTFRQLKSLVKSAHHQTQKQS 630 Query: 510 ----------------------------------YQLANGMGAMLDANDAL--SRHEWLI 533 Y M+ A + W++ Sbjct: 631 EPINPDDKVYYAKLHSILLTGLLSFIGQKDIEKGYLGTRQTRFMIHPQSANFKKQPPWVM 690 Query: 534 APLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQ 592 A +++ + + L +++ + L++ W+ +G + A + + Sbjct: 691 AFEIVETTQN---YARLTAMIETPWIETIGKHLIKSHYFDAHWEKKRGAVVASLQQTLLG 747 Query: 593 LTVKVQP---LAKPSEDELHQAMLNG--IRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 L + + + + + +R + ++ + EQL L + + Sbjct: 748 LKIVSNRTVDYSSIEPELCRELFILHGLVRRELEPRHSFQQDNEQLWLDVEQEIAKARQA 807 Query: 648 DWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQ-----ALRGLLDWGMQQRLDSE 702 D D+ L+A + L + V L + Q L + + +++ S Sbjct: 808 DM-RTDERDLIAWFDKRLPESICNVKQLNQWLKKNAKQNNQLLTLNKDVLFKAEEQDASL 866 Query: 703 LPAHYTVPTGSRIAIRYHEDNP 724 P V + + + YH + Sbjct: 867 YPETIQVKS-IELPLSYHFEPG 887 >UniRef50_B6JZW3 ATP-dependent RNA helicase Prp16 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JZW3_SCHJY Length = 1176 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 165/628 (26%), Positives = 269/628 (42%), Gaps = 62/628 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAAR 62 LP AV +LL+ + ++ TG+GK+T L L G G I +PRR+AA Sbjct: 494 LPAFAVREQLLSIIRDNQVTVVVGETGSGKTTQLAQFLYEDGQGKLGMIGCTQPRRVAAM 553 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + + G VGY +R ++ P T ++ +T+GVL R +L ++I+ Sbjct: 554 SVAKRVSEEMGVQLGTLVGYSIRFEDVTSPQTIIKYMTDGVLLRESLVQNDLDRYSVIIM 613 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ + LL + R DLKL++ SAT++ R + AP GR++P Sbjct: 614 DEAHERSLNTDILMGLLRTILSRRR-DLKLIVTSATMNAQRFSEFFGGAPQFTIPGRTYP 672 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS---- 238 V+ + P + AV + Q +G +L+F+ G +I+ + + R+ Sbjct: 673 VDVLFSKAPCSDYVEAAVRQVLQIHVSQPAGDILVFMTGQEDIEVTCDVIKERLAQLTDA 732 Query: 239 -DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + P+Y + + Q K A G+RKVV+ATNIAETSLT++GI VVD ++ Sbjct: 733 APLSVLPIYSQMPADLQTKIFDAAEPGVRKVVVATNIAETSLTVDGISYVVDTGFCKLKM 792 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQSD 356 ++ + G+ L +SQA+ QR+GRAGR PG++ L + + PEI +++ Sbjct: 793 YNAKMGIDTLQITPISQANANQRSGRAGRTGPGVAYRLYTESAFVREMFQTTLPEIQRTN 852 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALG 415 LS ++ L G + ++D+PP L + L LGAL+ L+A G KMA Sbjct: 853 LSNTVLLLKSLGVKNIMDFDFMDRPPAATLTTSSYELWTLGALDNFGNLTALGSKMANFP 912 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLLK 474 DP LA +L+ A + I ++L P + + + L Sbjct: 913 MDPSLAKLLIIAAEYGCSNEVLTIVSMLSVPSVFYRPKERLEESDAAREKFHVPESDHLT 972 Query: 475 RLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ----------------------- 511 LN+ + F + R + R Q Sbjct: 973 LLNIYLQWERNHCSVAWCTKHFLHSRSLSRARSIRDQLLDIMKFQKLPIVSCKSDWDVIR 1032 Query: 512 ----------------------LANGMGAMLDANDALSR----HEWLIAPLLLQGSASPD 545 L GM L A +L +++I L+ S Sbjct: 1033 KVLCSAYFNQAATAKGIGEYVHLRTGMPCHLHATSSLYGLGYLPDYVIYHELVLTSKE-- 1090 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTV 573 + + VD L + + V Sbjct: 1091 -YMNVVTSVDPYWLAEFGGAFYTLKERV 1117 >UniRef50_Q7XIR8 Os07g0508000 protein n=4 Tax=Embryophyta RepID=Q7XIR8_ORYSJ Length = 1280 Score = 690 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 168/632 (26%), Positives = 266/632 (42%), Gaps = 67/632 (10%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAAR 62 LP+ V +LL + V++ TG+GK+T L L G + +PRR+AA Sbjct: 583 LPIFTVRDDLLQVVRENQVVVVVGETGSGKTTQLTQYLHEDGYTTTGIVGCTQPRRVAAM 642 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + + G VGY +R ++ PNT ++ +T+GVL R +D +L ++++ Sbjct: 643 SVAKRVSEEMETELGHKVGYAIRFEDMTSPNTIIKYMTDGVLLRETLKDADLDKYRVIVM 702 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ +L V R D KL++ SATL+ D+ + PV GR+FP Sbjct: 703 DEAHERSLNTDVLFGILKKVVARRR-DFKLIVTSATLNADKFSKFFGGVPVFHIPGRTFP 761 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG----- 237 V + P + AV A + G +L+F+ G EI+ LA R+ Sbjct: 762 VNIMFSKTPCEDYVEAAVKQAMTIHITSGPGDILIFMTGQEEIEATCYALAERLEQLISS 821 Query: 238 -----SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + + P+Y L + Q K A +G RK ++ATNIAETSLT++GI V+D Sbjct: 822 STKTVPKLSILPIYSQLPADLQAKIFQKAEEGTRKCIVATNIAETSLTVDGIFYVIDTGY 881 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPE 351 ++ ++PR G+ L VS+A+ QRAGRAGR PG L + + PE Sbjct: 882 GKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLFTESAYQNEMLPNPVPE 941 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQK 410 I +++L +++ L + ++D PP N+L + L +LGAL L+ G K Sbjct: 942 IQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTVIGWK 1001 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRS 469 M DP LA ML+ + + I ++L P D + + Sbjct: 1002 MVEFPLDPTLAKMLLMGEQLECLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPE 1061 Query: 470 QQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL----------------- 512 L LNV + F R+ ++ R QL Sbjct: 1062 SDHLTLLNVYLQWKSNQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCHME 1121 Query: 513 ----------------------------ANGMGAMLDANDALSR----HEWLIAPLLLQG 540 NGM L + AL ++++ L+ Sbjct: 1122 WDVVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLT 1181 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQSDT 572 + + VD L + P +T Sbjct: 1182 TKE---YMQCVTAVDPQWLAELGPMFFSVKET 1210 >UniRef50_Q1YSZ9 ATP-dependent helicase HrpA n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=Q1YSZ9_9GAMM Length = 1309 Score = 689 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 194/742 (26%), Positives = 326/742 (43%), Gaps = 70/742 (9%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 LPV+A E+ L ++++ TG+GK+T +P L A G+ G I +PRR+A Sbjct: 83 PELPVSARADEIAELLTKHQVIVVAGETGSGKTTQIPKICLQAGRGVRGLIGHTQPRRIA 142 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+AE L G+ VGY++R + PN+ ++++T+G+L IQRD LS + Sbjct: 143 ARTVATRIAEELKVNIGEAVGYQVRFSDQSAPNSLIKLMTDGILLAEIQRDRFLSAYDTI 202 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L ++ R DLK++I SAT+D D+ + +APVV GRS Sbjct: 203 IIDEAHERSLNIDFLLGYLKNLLPQ-RPDLKIIITSATIDVDKFSKHFNDAPVVEVSGRS 261 Query: 181 FPVERRYL--PLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPV+ Y R V Q++G +L+FL G EI+ V + Sbjct: 262 FPVDVIYNHPDDLEADRDQMIVDCLQDIHHNQKAGDVLIFLSGEREIREVNLAIKRAQLP 321 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 + PLY LSL +Q K +P R++VL+TN+AETSLT+ GIR V+D + RV+R+ Sbjct: 322 HTEVVPLYARLSLAEQSKIF--SPHRGRRIVLSTNVAETSLTVPGIRYVIDTGRARVSRY 379 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 RT + RL + +SQAS QRAGR GR+ G+ L ++E E A ++PEI++++L+ Sbjct: 380 SFRTKVQRLPIEAISQASANQRAGRCGRIADGVCYRLYSEEDFEGRPAFTDPEIVRTNLA 439 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALGND 417 +++++LQ D ++D P + +LL+ L A+ E +LS G+++ + D Sbjct: 440 AVILQMLQLRIGDIRNFPFVDPPDSRMISDGFKLLEELQAVTEDGKLSNLGKRLVNIPLD 499 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL 476 PR A ML+ + + A I L + PR +D A ++ WQ+ + + L Sbjct: 500 PRFARMLLESAKNGCLAEVMIITTGLSIQDPRERPADKQQAADQSHKKWQEPNSDFVSLL 559 Query: 477 NVRGGEADSSLI------APLLAGAFADRIARRRGQDGR--------------------- 509 N+ + + + R +D Sbjct: 560 NLWRHFEEQRQQLSGNQYSRYCKRNHVSYLRMREWRDLHHQVHTACRGLKLTANTEPAEQ 619 Query: 510 -----------------------YQLANGMGAMLDANDALSR--HEWLIAPLLLQGSASP 544 Y + LS+ +WL+A L++ + Sbjct: 620 DAIHRSILSGLLGQVGILQDKWEYLGTRNRKFFIFPGSGLSKKPPKWLMAGSLMETTKQF 679 Query: 545 DARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKV---QPL 600 + +D D L LV++S ++ G + A R + L++ + Sbjct: 680 ALTV---AKIDSDWLEPLAAHLVKKSYSEPFYNKKSGQVMAKERQTLFGLSIVENKNRVY 736 Query: 601 AKPSEDELHQAMLNGIRDK--GLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLL 658 + + E + + + +L L D V+ +++ Sbjct: 737 GQVAPQEARNVFIQQALVEEGYRGKGEFYRRNHKLVAELQALEDRFRRRDLL-VEQQAIF 795 Query: 659 AALETWLLPHMTGVHSLRGLKS 680 + + + + + + Sbjct: 796 DFYDQLVPEGIYNLTAFEKWRK 817 >UniRef50_B0RGP0 ATP-dependent helicase n=3 Tax=Actinobacteria (class) RepID=B0RGP0_CLAMS Length = 1272 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 213/860 (24%), Positives = 356/860 (41%), Gaps = 120/860 (13%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 LPV+ + E+ A+ V+++ TG+GK+T LP L I +PRRLAA Sbjct: 9 PELPVSRMRDEIADAIRDNQVVIVAGATGSGKTTQLPKICLELG--RESIGHTQPRRLAA 66 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R +++R+AE L + G VGY++R + V +TR++++T+G+L +QRD L +I Sbjct: 67 RTISERIAEELGGEVGQLVGYQVRFTDKVSADTRIKLMTDGILLNELQRDRLLKKYDTII 126 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLKL+I SAT+D + +AP+V GR++ Sbjct: 127 IDEAHERSLNIDFLLGYLKQLLP-RRPDLKLIITSATIDPQSFSKHFGDAPIVEVSGRTY 185 Query: 182 PVERRYLP---------------------LPAHQRFDDAVAVATAEMLRQESGSLLLFLP 220 PVE RY P + F + + A E+ + SG +L+FL Sbjct: 186 PVEIRYRPLVAEAAVAGEDDDLADAPLERPADDRDFLEGINAALDELAAESSGDVLVFLS 245 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQG--MRKVVLATNIAETS 278 G EI+ ++ + SR + PLYG LS DQ + P+ Q R++VLATN+AETS Sbjct: 246 GENEIRDAEDAIRSRNLPHTEVLPLYGRLSSADQHRVFQPSTQAGVRRRIVLATNVAETS 305 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ GI+ V+D R++R+ R+ + RL + +SQAS QR+GR+GR GI++ L ++ Sbjct: 306 LTVPGIKYVIDAGTARISRYSVRSKVQRLPIEAISQASANQRSGRSGRTSDGIAIRLYSE 365 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 E R +EPEIL+++L+ ++++++ G D A +L P + LL LGA Sbjct: 366 EDFLRRPEFTEPEILRTNLAAVILQMVSLGLGDIAAFPFLQPPDSRGIKDGVDLLTELGA 425 Query: 399 L-----EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNS 452 + L+ G+ ++ L DPR A M+V ++ + I A L + R Sbjct: 426 VIRSPDGTPALTQVGRDLSRLPIDPRFARMVVESRKHGVSREVMIIVAGLTIQDVRERPL 485 Query: 453 DLGVAFSRNQPAWQQRSQQLLKRLNVRG-------------------------------- 480 + + + S + LN+ Sbjct: 486 EKRPQADQQHARFVDPSSDFITLLNLWNHLEEKEAELSSSAFRRMCKAEFLNYVRVREWK 545 Query: 481 -------------------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD 521 +AD I L I + Q Y A ++ Sbjct: 546 DVFRQLRQLARPLDLAMNEPKADPDGIHKSLLAGLLSHIGLKDAQKKDYVGARQSRFVVF 605 Query: 522 ANDALSR--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQ-SDTVEWDDA 578 AL++ + +++ L++ S +D LV++ W+ Sbjct: 606 PGSALAKKQPDAIMSAELVETSRL---FARTNAAIDPAWAEPIAGGLVKRTHSEPHWEKK 662 Query: 579 QGTLKAWRRLQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQL 633 QG AW R+ + + + + ++ + + +G S + +L Sbjct: 663 QGATVAWERVTLYGVPIVLKRRVQFSRIDPAYARELFIRHALVEGDWESQQAFDRANRRL 722 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL--KSLDIYQALRGLL 691 R L + D DDE++ + + + + G K L + Sbjct: 723 REELAEVEERTRRRDILN-DDEAVFEFYDKRIPRDVASTRAFEGWWKKQRQETPELLTMT 781 Query: 692 DWGM----QQRLDSEL-PAHYTVPTGSRIAIRYHEDNP-PALAVRMQEMFGEATNPTIAQ 745 + +D P + R+++ Y + P V +Q Sbjct: 782 AEELVASDAMDVDEAAFPPTWQ-QGDQRLSLTYRFEPGAPDDGVTVQ------------- 827 Query: 746 GRVPL-VLELLSPAQRPLQI 764 VPL +L LSPA Q+ Sbjct: 828 --VPLALLARLSPAGFDWQV 845 >UniRef50_C5DJP0 KLTH0F17974p n=2 Tax=Saccharomycetaceae RepID=C5DJP0_LACTC Length = 1108 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 172/643 (26%), Positives = 280/643 (43%), Gaps = 76/643 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GK-IILLEPRRLA 60 SLP V ELL + V++ TG+GK+T L L N G+ + +PRR+A Sbjct: 396 SLPAYQVRSELLQLIRDNQVVVVIGETGSGKTTQLAQFLNEDGFCNSGRLVGCTQPRRVA 455 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A + + G+ VGY +R ++ +T+++ +T+G+L R L + Sbjct: 456 AMSVATRVAMEMGVELGNEVGYSIRFEDKTSKDTKIKFMTDGILLRETLVSEMLDKYSCI 515 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D+ +L ++ R DLKL+I SAT++ +R + AP GR+ Sbjct: 516 IMDEAHERSLNTDVLFGILKNLLSKRR-DLKLIITSATMNANRFSRFFGAAPQFTIPGRT 574 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQEQLASRI-- 236 FPV+ Y P + A+ A L +G +L+F+ G +I+ + ++ Sbjct: 575 FPVQVVYSRHPVSDYVESAIVQACKIHLSTPVSNGDILIFMTGQEDIEATCAGVYEKLLD 634 Query: 237 -------------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEG 283 D+ + P+Y AL + Q K P P RKVV+ATNIAETSLT+EG Sbjct: 635 VYAKRSGKQQLNQPEDIEILPIYSALPADVQGKIFEPTP-NKRKVVVATNIAETSLTVEG 693 Query: 284 IRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE-QAE 342 +R V+DC ++ ++P+ GL L +S AS QR+GRAGR PG + L ++ + Sbjct: 694 VRYVIDCGYSKLKVYNPQIGLDSLQIAPISMASANQRSGRAGRTGPGFAYRLYTEDSFFD 753 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG- 401 Q+ PEI +++LS L+ L G +D ++D PP ++ + L +GAL+ Sbjct: 754 DMYVQTIPEIQRTNLSNTLLLLKYLGVNDIMAFPFVDPPPEQIIMTSLFELWTIGALDNF 813 Query: 402 ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSR 460 L+ G++MAA P L+ ML+ + + + I ++L P + + Sbjct: 814 GNLTELGKQMAAFPLQPSLSKMLLVSSQNGCSEEILTIVSMLSVPQVFYRPKEREKESDQ 873 Query: 461 NQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRY---------- 510 + + L LNV +S + F + +R ++ R Sbjct: 874 CRTRFFVPESDHLTLLNVYSQWKANSYSSHWCRRNFLQFKSLQRAREIRRQLYTLMNKKK 933 Query: 511 -----------------------------------QLANGMGAMLDANDALSR----HEW 531 QL NG+ + AL + Sbjct: 934 VPVVSSGTDWDAVRKCICAGYAHQAAKLSGLSRYTQLRNGLELRVHPTSALFGAGDLPSY 993 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 ++ LL + + I VD D L+ VE Sbjct: 994 VVYHELLLTT---NEYINTVTAVDPDWLMNYGVLFYNVKRRVE 1033 >UniRef50_Q759P9 ADR224Wp n=2 Tax=Saccharomycetaceae RepID=Q759P9_ASHGO Length = 1090 Score = 688 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 175/632 (27%), Positives = 271/632 (42%), Gaps = 74/632 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 +LPV V +LL + ++ TG+GK+T L L +I + +PRR+A Sbjct: 377 TLPVYEVKSQLLQVIRDNQVTVIIGETGSGKTTQLAQYLHEDGFCRLGKQIGVTQPRRVA 436 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A + + G VGY +R ++ +TRL+ +T+G+L R D L + Sbjct: 437 AMSVAERVALEMGVELGKEVGYAIRFEDKTSADTRLKFMTDGILLRETLIDDLLEKYACI 496 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D+ L ++ R +LKL+I SAT++ + Q +AP GR+ Sbjct: 497 IMDEAHERSLNTDVLLGFFKNLLTRRR-NLKLIITSATMNASKFSQFFGDAPQFTIPGRT 555 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASR---- 235 FPV+ Y P + AV A + L G +L+F+ G +I+ + L R Sbjct: 556 FPVQINYTSYPVPDYVEAAVQQAASIHLSTSLLGDILIFMTGQEDIEATCDALKERIVDM 615 Query: 236 -----------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 I +DV + P+Y AL + Q + + RK+V+ATNIAETSLTI+GI Sbjct: 616 RVKRKGSIMQDILADVEILPIYSALPADIQGRIFNKSDAKKRKIVVATNIAETSLTIDGI 675 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ER 343 + V+DC ++ ++PR GL L +S A+ QR+GRAGR PGI+ L + A Sbjct: 676 KYVIDCGYSKLKVYNPRIGLYNLAITPISLANAQQRSGRAGRTGPGIAYRLYTENTAIAD 735 Query: 344 AAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-E 402 QS PEI ++ L+ +L+ L G D ++D PP L+ + L LGAL+ Sbjct: 736 MHPQSIPEIQRTSLASVLLLLKSLGIEDIFNFPFMDSPPSATLMTSMFELWTLGALDNFG 795 Query: 403 RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRN 461 L+ G KMA P L+ +L+ + + I ++L P + + Sbjct: 796 ALTEMGSKMAKFPLQPSLSKILLLSAKYGCSEEMVTIVSMLSVPQIFYRPKERQKESDQA 855 Query: 462 QPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA-------- 513 + + L LNV + + RR D R QL Sbjct: 856 RNRFVVPESDHLTLLNVFVQWKVHRYSLDWCRKNYLQYRSLRRAYDIREQLIRAMLKEDV 915 Query: 514 -------------------------------------NGMGAMLDANDALSR----HEWL 532 NGM L AL+ ++ Sbjct: 916 PIISSGSGWDILRKCICAGYVHQAARKSGLNQYVHLKNGMELKLHPTSALAGMGDLPPYV 975 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCP 564 + LL + I L VD L++ Sbjct: 976 VYHELLLTTKE---YINLVTAVDPFWLMEYGA 1004 >UniRef50_C5X1W0 Putative uncharacterized protein Sb01g037170 n=2 Tax=Poaceae RepID=C5X1W0_SORBI Length = 692 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 170/655 (25%), Positives = 280/655 (42%), Gaps = 102/655 (15%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 +LPV E L +L ++L TG+GK+T +P +L G++ + + +PRR+A Sbjct: 64 TLPVWQQKEEFLRSLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPRRVA 123 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V++R+AE ++ G+ VGY +R ++C T L+ +T+G+L R DP L ++ Sbjct: 124 AMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLEKYKVI 183 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 +LDE HER+L D+ LL +V + R DLKL++MSATL+ ++ Q AP++ GR Sbjct: 184 VLDEAHERTLATDVLFGLLKEVLKN-RPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRL 242 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS-- 238 PVE Y P + A+ + + +G +L+FL G EI+ ++ I + Sbjct: 243 HPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINNMG 302 Query: 239 ----DVLLCPLYGALSLNDQRKAILPAP-------QGMRKVVLATNIAETSLTIEGIRLV 287 V + PLY L Q+K PAP RK+V++TNIAETSLTI+GI V Sbjct: 303 DQVGTVKVVPLYSTLPPAMQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVYV 362 Query: 288 VDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAA 346 +D + ++PR + L+ +S+AS QRAGRAGR +PG L ++ E Sbjct: 363 IDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNEDLQP 422 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLS 405 Q+ PEIL+S+L+ ++ L + G D ++D P L+ A +L LGAL+ L+ Sbjct: 423 QTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLT 482 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW 465 G+ M+ DP+++ M + A + + Sbjct: 483 QLGEMMSEFPLDPQMSKM-----------------------------EAQKAADEAKARF 513 Query: 466 QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG-------- 517 L LNV ++ F + A + + R QL M Sbjct: 514 GHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINSRALKSADNVRQQLVRIMTRFNLKMCS 573 Query: 518 -----------------------------------------AMLDANDAL-SRHEWLIAP 535 L ++ + + EW+I Sbjct: 574 TDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVIYN 633 Query: 536 LLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQ--GTLKAWRRL 588 + + + I + + L+ P S+ + + L R Sbjct: 634 EYVLTTRN---FIRTVTDIGGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRER 685 >UniRef50_D1N0X8 ATP-dependent helicase HrpA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0X8_9BACT Length = 1235 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 209/797 (26%), Positives = 346/797 (43%), Gaps = 87/797 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LP++ + E+ A + +P +++ TG+GK+T LP LA G G+I +PRR+AA Sbjct: 24 ELPISRHVDEIKKAWESSPVIIVGGDTGSGKTTQLPKIALALGYGRRGRIGCTQPRRIAA 83 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +++R+A+ L +PG VGY++R + +T L+ +T+G+L + D L ++I Sbjct: 84 SAMSRRVAQELGCEPGTGVGYQVRFDDRTTKSTVLKFMTDGILLAETRNDRSLRQYEVLI 143 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK+ I SATLD + +APV+ EGR++ Sbjct: 144 IDEAHERSLNIDFLLGYLKNLLPH-RPDLKVAISSATLDTQEFSRFFNDAPVIAIEGRTY 202 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLR-QESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 PVE ++P + +A A + G +L+FLPG EI+ + L R + Sbjct: 203 PVEDVFMPPEYDEELSAQIARAAEFVTSLDPQGDILVFLPGEREIRDATDVLTGRRLRNT 262 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+G LS DQ+K P G R++VLATN+AETS+TI IR V+D R+ RF+P Sbjct: 263 EVLPLFGRLSAADQQKVFN--PGGQRRIVLATNVAETSVTIPRIRFVIDSGLARIKRFNP 320 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RT + L + +SQAS QR GR GR+ G+ +HL ++E ER+A ++PEI ++ L+G+ Sbjct: 321 RTQIEELQVESISQASARQRRGRCGRIADGVCVHLYSEEDLERSAPYTDPEIKRTGLAGV 380 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 ++++ G +++ PP + R L+ L AL+ RL+ +G K+A L DP Sbjct: 381 ILQMAALGLPRITHFPFINPPPPAAVREGLRTLEDLRALDPAGRLTREGWKLAELPIDPH 440 Query: 420 LAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 L ML A+ IAA L + P+ + A ++ + + LN+ Sbjct: 441 LGKMLAFAEKRRVLPELLVIAAYLSIQDPQERPLEKQQAADEAHRRYRDKKSDFVTILNL 500 Query: 479 RG----GEADSSLIAPLLAGAFAD------------------------------------ 498 + + F + Sbjct: 501 WNAIQQECPSNRQLRVFARRNFYNFNRLLEWRNLAADLADAAADLKWSGAKLPKLLENPP 560 Query: 499 --------------RIARRRGQDGRYQLANGMGAMLDANDALSR----HEWLIAPLLLQG 540 IAR ++ Y ++ L + EWL++ L++ Sbjct: 561 YDQVHQSILAGIPRHIARYMPEEQHYLGTGARKFLIFPGSGLFKAKPAPEWLMSFALVET 620 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQ-SDTVEWDDAQGTLKAWRRLQIGQLTV---K 596 S + D L Q P L + D WD G + A RL G L + + Sbjct: 621 SRL---FARQNAAIRPDYLEQAAPHLCTRIYDQPYWDAESGFVYARERLTFGGLLIHNGR 677 Query: 597 VQPLAKPSEDELHQAMLNGIRDKGLSVLN--WTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 +K E + + G ++ W ++ + L + + +D Sbjct: 678 RVLYSKSHPAEAREIFIREALATGSVIIPKTWIEKSAHVLESLALLEEKV-RRPGTILDP 736 Query: 655 ESLLAALETWLLPHMTGVHSLRGLKSLD-------IYQALRGLLDWGMQQRLDSELPAHY 707 E+++ T L + V SL+ L D A++ +Q + + P Sbjct: 737 EAVVEHYLTLLPEGIDSVKSLKELIRNDSQDYSITPQDAMQEQF----RQWEEGDYPDAL 792 Query: 708 TVPTGSRIAIRYHEDNP 724 +G +RY Sbjct: 793 AF-SGQSFRLRYSFTPG 808 >UniRef50_Q6AL39 Related to ATP-dependent helicase HrpA n=1 Tax=Desulfotalea psychrophila RepID=Q6AL39_DESPS Length = 1257 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 194/798 (24%), Positives = 328/798 (41%), Gaps = 88/798 (11%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLA 60 ++ LP+ E++TA+ ++++ TG+GK+T LP L + +PRRLA Sbjct: 17 LTILPIDKHKDEIITAIKENQVIVIAGDTGSGKTTRLPQYCLEVAQEGKLVGCTQPRRLA 76 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+ E + + VGY++R + T+++ +T+GVL + D +L ++ Sbjct: 77 AVSVAARVGEEVGRS--EEVGYKIRFHDYTTAKTKIKFMTDGVLLAETKSDRDLRKYSIL 134 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D L L + R DLKL+I SAT+D + AP++ EGR+ Sbjct: 135 IVDEAHERNLNIDFLLGYLKRLLP-RRPDLKLIITSATIDTASFAKHFNNAPLISIEGRT 193 Query: 181 FPVERRYLP--LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FP++ RY P + V + LR+ L+FLP +I+ E LA I Sbjct: 194 FPIDLRYAPIADEDEDYLEHCTGVVSQLFLRERPADTLIFLPTEKDIRNCCEMLAKHI-P 252 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGM-RKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 +V + PL+G L +DQR+ P PQG K+V+ATN+AETS+T+ GIR V+D R+ Sbjct: 253 NVEILPLFGRLQGSDQRRIFQPCPQGKIAKIVVATNVAETSITVPGIRYVIDSGLARMTY 312 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 + R+ T L Q++S+AS QR GR GR+ G + L A+E + PEI +S+L Sbjct: 313 YSVRSKTTSLPIQKISRASCDQRKGRCGRVSSGTCIRLFAEEDYLGRDEFTLPEIKRSNL 372 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGND 417 + +L+++ DP + ++D P + LLQ LGA++G L+ +G+ MA L D Sbjct: 373 AEVLLQMSSLKLGDPNKFPFVDPPATSTIRDGYALLQELGAIKGYELTLRGKIMADLPID 432 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL 476 P ++ +L+ A ++ IAA L + PR+ ++ + + + + L Sbjct: 433 PCISRILIEASSNSCLRETMIIAAALSVQDPRIRPAEKEKEADQVHQRFAHKHSDFMALL 492 Query: 477 NVRGGEADSSLIAPL------LAGAFADRIARRRGQDGRYQL------------------ 512 N+ + F R D QL Sbjct: 493 NIWNSFHEEEEKKSWSRLKKFCKSNFLSFQRMREWLDLHEQLCRIVKRYKEFSFNENDGS 552 Query: 513 ---------------------------ANGMGAMLDANDALSRH--EWLIAPLLLQGSAS 543 A M+ L + +W++A L + Sbjct: 553 YEQIHRSILAGFLRNIALKKEKKIYMGAGNRELMVFPGSHLFQSAGQWIMAAGFLDTNRL 612 Query: 544 PDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP--- 599 L +++D + L + S W+ G + A ++ + L + Sbjct: 613 ---YALTVATIEVDWIEPLAKSLCRYSWANPRWEKKTGQVIADEKVTLFGLVLLASRRVN 669 Query: 600 ---LAKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 K + E + + G + L + + L + D D Sbjct: 670 FGKRDKKNRAEARRIFIESALLSGDLWGKYPFLKNNLTLVSQWQETEERLRKRDIV-YSD 728 Query: 655 ESLLAALETWLLPHMTGVHSLRG-LKSLDIYQALRGLLDWGMQQRLDS--------ELPA 705 +L + L + SL LK + +AL Q L + P Sbjct: 729 TALHQFYQDRLGEDVYDRTSLEKFLKQTEDKKALFMT----EQDILRRTPETSEYADFPT 784 Query: 706 HYTVPTGSRIAIRYHEDN 723 + + + + Y D Sbjct: 785 TIQIGS-LSLKLSYTFDP 801 >UniRef50_D0LYT6 ATP-dependent helicase HrpB n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYT6_HALO1 Length = 891 Score = 684 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 267/877 (30%), Positives = 381/877 (43%), Gaps = 96/877 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LP+ VLP L+ AL +L AP GAGK+T +P LL +G+I +LEPRRLA Sbjct: 3 ARLPIDEVLPALIDALRERSSAVLLAPPGAGKTTRVPPALLDAGLAGDGEIAVLEPRRLA 62 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+AE L E+ G VGY +R V TR+ VTEGVLTR + DP LSGVG V Sbjct: 63 ARMAAQRVAEELGERVGGRVGYEVRFDRAVSAETRIRFVTEGVLTRKLLGDPGLSGVGAV 122 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DEFHER LQ DLALALL +QQ R L+L++MSATLD + L E PVV SEGR Sbjct: 123 VIDEFHERHLQGDLALALLRRLQQRDRPGLRLVVMSATLDPGPVSAFLGECPVVRSEGRQ 182 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQES--------------GSLLLFLPGVGEIQ 226 +PVE Y + VA A LR G +L+FLPG GEI+ Sbjct: 183 YPVELDYAAPGDDRPLAKRVAGAVRVALRHRPEQAPEQAQAQDPAGGDVLVFLPGAGEIR 242 Query: 227 RVQEQLASR--------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 + +G L L+G L +Q +A+ P RKV+ ATN+AE+S Sbjct: 243 AAMDACRGERGQPAGLDLGQRADLVALHGDLPAAEQDRAVR--PSARRKVIFATNVAESS 300 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 +TI+G+ V+D RVAR P +G+ L + +SQAS QRAGRAGR PG + L + Sbjct: 301 ITIDGVTTVIDSGLARVARHAPWSGIPTLRVEPISQASAAQRAGRAGRTAPGRCVRLYTR 360 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 + + A PEI ++DL+ + L W + PP L AA LL+ LGA Sbjct: 361 HEHDSRPAFDPPEIARADLAEAALWLRALDIDPLDGFGWYEAPPEAALRAADELLERLGA 420 Query: 399 LEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVA 457 + G RLS G+ M L PR A +L+ A+ A +AA+L E R+ Sbjct: 421 VAGGRLSKLGRAMLRLPVHPRQARLLLEAQARGVGAEGCVLAALLGERELRLSRRSSLGG 480 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA---- 513 A LL+ L+ ++ D R + QLA Sbjct: 481 RGPAPAALSSGPSDLLEDLDAFAAASERGAGG--ARAHGLDPGGLRAVDRVQRQLASALK 538 Query: 514 -------------------------------------------------NGMGAMLDAND 524 G A L Sbjct: 539 RTRSRELPTAPRPRTPEAVDEALQIATLAGYPDRVGRRRRPREPEIVFVGGGSATLSPTS 598 Query: 525 ALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKA 584 + E+++A + A I A VD L+ + + + D + W+ + ++ Sbjct: 599 VVLGAEFVVAVDARERERGRGAVIHRASAVDPAWLLDLFLEHIDERDELLWNAERQRVER 658 Query: 585 WRRLQIGQLTVKVQ------PLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLL 638 R+ G L + Q + + + + G+ R R+ Sbjct: 659 VARMVYGDLVIDEQRDPGGARRDPATAERAAEILAEAALQAGVERFCDRDAVAAWRCRVA 718 Query: 639 CAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR---GLLDWGM 695 AA PA+ +++ AL G L + LR Sbjct: 719 FAAGIAGPERIPALGEDAEREALRQ----MCRGCIGFDELAQRSLLDGLRAQLAAAAPEA 774 Query: 696 QQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755 ++ P H + R+ + Y D PP + R+Q+ F + P++ G VPL L LL Sbjct: 775 PALVERLAPRHVDIAGRRRVPVHYESDRPPWIESRLQDFFSMSAGPSV--GGVPLTLHLL 832 Query: 756 SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 +P QR +Q++ DL+ FW+ Y ++K++ RYPKH W Sbjct: 833 APNQRAVQVSADLAGFWERHYPALRKQLMRRYPKHAW 869 >UniRef50_A2EVN8 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2EVN8_TRIVA Length = 1006 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 272/636 (42%), Gaps = 62/636 (9%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAAR 62 LP++ +++ L +L TG GK+T +P LL + I + +PRR+AA Sbjct: 347 LPISDYESQIIDMLSKNRVFILVGETGCGKTTQIPQFLLRSGIAGDLMIGVTQPRRVAAI 406 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R+A+ N GD +GY++R + NT+++ +T+G+L + D +LS G+++L Sbjct: 407 SVAKRVADETNSIIGDLIGYQVRFEEKTSRNTKVKFMTDGMLLKECLGDRQLSNYGVIML 466 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER++ D+ L+ ++ D LK+++ SATL ++ PV+ GR+FP Sbjct: 467 DEAHERTIHTDVLFGLMKELLSKD-DRLKVIVTSATLQKEKFSSFFFNCPVLEVPGRTFP 525 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 V + +V +E G +LLFL G +I EQ+ R Sbjct: 526 VTTSFAVTAFTDYLQASVNTVLKLHQTEEKPGDILLFLTGQDDIDTACEQIYQRSKPMEE 585 Query: 239 ---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 +++ P+Y +L Q P P G RKVV+ATNIAETS+TI+GIR VVD + Sbjct: 586 NFGKLIVLPIYSSLPTEQQTMIFQPTPPGQRKVVVATNIAETSITIDGIRYVVDPGLVKE 645 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQ 354 R+DPRTG+ L +S+A+ QR GRAGR G + L ++ + PEI + Sbjct: 646 MRYDPRTGMDTLEVVPISKAAANQRKGRAGRTAAGKCIRLYTEDSYNNEMKETTIPEIQR 705 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAA 413 S+++ + +++ G D ++D+PP ++ A L LGAL+ L+ G+ M+ Sbjct: 706 SNMAMVALDMKVIGIDDLIGFDFMDKPPTKIIIDALDQLYTLGALDEEGNLTPLGRDMSK 765 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQL 472 +P+LA ML+ + + + AIL + + Sbjct: 766 FSLNPQLAKMLIMSSMLGCSEEVLVLVAILSVQGIWYRPRKKQAEADAMKARLNRDEGDH 825 Query: 473 LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG--------------- 517 + L+V + + + +R +D QL M Sbjct: 826 MTLLHVFREWQKNGEREAWCKENYVHYRSLKRAKDVMTQLRQQMEQFHVPLVSCGKEIIP 885 Query: 518 ------------------------------AMLDANDALSR--HEWLIAPLLLQGSASPD 545 + AL E+ + L+ + Sbjct: 886 ILKAIVSGFFAKAARRYMGTEYKTIVDDHPVYIFPGSALFGREPEYCVFHELVNTTRE-- 943 Query: 546 ARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + + VD LV+ P +++ +E + Sbjct: 944 -YMRNTVAVDPRWLVELAPAFYRKASPLEMTSRKRA 978 >UniRef50_B9Z2A4 ATP-dependent helicase HrpA n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z2A4_9NEIS Length = 1314 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 199/817 (24%), Positives = 341/817 (41%), Gaps = 101/817 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV E+ A+ V++ TG+GK+T +P L G+ G I +PRRLAA Sbjct: 75 ALPVNQKREEIRAAIAKHQVVIICGETGSGKTTQIPKICLELGRGVYGLIGHTQPRRLAA 134 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R+A+ L + G VG+++R + + + ++++T+G+L Q D L +I Sbjct: 135 RSVATRIAQELGSELGAHVGFKVRFTDKLSDKSVIKLMTDGILLAETQTDRYLEAYDTII 194 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK+++ SAT+D +R + APV+ GR+F Sbjct: 195 IDEAHERSLNIDFLLGYLKQMLP-RRPDLKVIVTSATIDAERFARHFDGAPVIEVSGRTF 253 Query: 182 PVERRYLP------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 PVE RY P +DA+ A E+ R G +L+FLPG EI+ E+L Sbjct: 254 PVEVRYRPLKERDEDEREVEMEDAIVDAVDEISRHGPGDMLVFLPGEREIRDTAEKLRKS 313 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + PL+ LS DQ+K P G R++VLATN+AETSLT+ GI+ V+D R+ Sbjct: 314 GIRGYEILPLFARLSNEDQQKIFK--PSGGRRIVLATNVAETSLTVPGIKYVIDTGLARL 371 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 R+ PR + +L +++SQA+ QRAGR GR+E G+ + L ++ A ++PEI++S Sbjct: 372 NRYSPRAKVEQLQVEKISQAAARQRAGRCGRVEAGVCVRLYGEDDFNARPAFTDPEIVRS 431 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 +L+ +++ + +L+ P + ++L LGA++ + L+ G+++A L Sbjct: 432 NLAAVILRMAALRLGRVDDFPFLEAPSSRLIADGYQVLTELGAVDEKSELTPVGKELARL 491 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 DP++ ML++A++ IAA L + PR + A R Q + L Sbjct: 492 PIDPKIGRMLLAARDLGCVREVLIIAAALSIQDPRERPFEAREAAERAQQKFADEKSDFL 551 Query: 474 KRLNVR-------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM---------- 516 L++ + + + L F + R ++ QLA Sbjct: 552 SFLHLWDFFQDALKHKKSNRQLINLCHEHFLSYLRMREWRELHGQLAEIAAEMGLIQRHE 611 Query: 517 -------GAMLDANDALSRHEWLIAP-----------------------LLLQGSASPDA 546 A L+ R + G+ Sbjct: 612 AHADAEPSANLEQLSVKKRQQLDAVAYERLHQALLTGLIGNLGMKSQESDDYLGTRGVHF 671 Query: 547 RILLALLV---DIDELVQR------------------------CPQLVQQS-DTVEWDDA 578 + + LV P L++ W+ Sbjct: 672 HVFPGSGLKKAKPKWLVAAELVETTKLYARCVGKVEPEWVEKLAPHLIKYHYFDPHWEKT 731 Query: 579 QGTLKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRD--KGLSVLNWTAEAEQL 633 +G + A R+ + LT+ + + + +E + + G + S W +QL Sbjct: 732 RGEVVASERVTLYGLTLVPRRPVSYGRIAPEEARELFIRGALVAMEYASNAPWFQRNQQL 791 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKS----LDIYQALRG 689 + D VD+++L A + H+ S + D + Sbjct: 792 IREVEQLEHKARRQDVL-VDEDALFAFYAERIPAHVVDAASFEAWRKEAEQADPKRLFLT 850 Query: 690 L--LDWGMQQRLD-SELPAHYTVPTGSRIAIRYHEDN 723 L Q + ++ P G ++ ++Y + Sbjct: 851 REELMRHAAQHVTVNQFPEWLEHEDG-KLRLKYRFEP 886 >UniRef50_Q5CYX6 Prp16p pre-mRNA splicing factor. HrpA family SFII helicase n=2 Tax=Cryptosporidium RepID=Q5CYX6_CRYPV Length = 1042 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 166/649 (25%), Positives = 273/649 (42%), Gaps = 89/649 (13%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 SLPV V L+ + V++ TG+GK+T L L G I +PRR+AA Sbjct: 318 SLPVYKVRDSLIKLIGEHMVVVVVGETGSGKTTQLTQYLHEFGYSKRGIIGCTQPRRVAA 377 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VAQR+A+ +N G VGY +R ++ +T ++ +T+GVL R DPEL +I Sbjct: 378 VSVAQRVADEMNVDLGKEVGYTIRFEDFTSKSTVIKYMTDGVLMRESLSDPELERYSAII 437 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ + V R D +L++ SAT+D+++L AP+ GR+F Sbjct: 438 MDEAHERSLNTDVLFGIFRSVLSNRR-DFRLIVTSATMDSEKLSSFFGNAPIFNIPGRTF 496 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQE----------------SGSLLLFLPGVGEI 225 PVE YL D AV G +L+F+ G +I Sbjct: 497 PVEIEYLRYFPDDYIDAAVRQCLKIHCTNPLSLLENKDNSDEKQKKDGDILIFMTGQEDI 556 Query: 226 QRVQEQLASRIGS-------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 + ++ ++ + +++ P+Y L + Q K P+P RKV++ATNIAETS Sbjct: 557 EATCILISEKLENLMIDGADPLMILPIYSQLPSDLQAKIFKPSP--YRKVIVATNIAETS 614 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT++GIR V+DC +V ++P+ G+ L +SQA+ QR+GRAGR+ GI + + Sbjct: 615 LTLDGIRYVIDCGLCKVKVYNPKIGMDSLQITPISQANALQRSGRAGRVSSGICYRMYTE 674 Query: 339 EQA-ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLG 397 + S PEI +++LS +++ L G D ++D P ++ + L LG Sbjct: 675 QTFLADMLPNSVPEIQRTNLSNVVLLLKSLGSEDVFSFPFIDPPSSSSISTSLYQLWSLG 734 Query: 398 ALEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLG 455 AL+ L+ G++MA DP L+ +L++A D A + A+L P D Sbjct: 735 ALDDNGSLTDLGRQMARFPLDPPLSKVLLTANKLDCLIEAIVVVAMLTVPSIFYRPKDRL 794 Query: 456 VAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN- 514 ++ + L LN+ F + A R ++ Q+ Sbjct: 795 EEADASREKFSIPESDHLTLLNIFIQWKRHGSNVRWSERHFLHQKALMRVEEVFNQIVEI 854 Query: 515 -------------------------------------------GMGAML--------DAN 523 G L + Sbjct: 855 YSNIMSMETMPRIDWKPNPLCWDNLRKAFCSGYFHNSAKIRAIGQYVNLSTSVPTYIHPS 914 Query: 524 DALS----RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQ 568 +L ++LI ++ S + ++ + L P + + Sbjct: 915 SSLFLSGVNPDYLIYHEVIITSKE---YMNAVSAIEPEWLNFYAPHIFK 960 >UniRef50_D1H6K3 Whole genome shotgun sequence of line PN40024, scaffold_137.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H6K3_VITVI Length = 1408 Score = 682 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 172/645 (26%), Positives = 276/645 (42%), Gaps = 80/645 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 +LP+A+V L+ + +++ TG+GK+T LP LL + I + +PRR+A Sbjct: 766 ALPIASVEKRLVEEVQKNDTLIIVGETGSGKTTQLPQFLLNGGFCHDGKIIGITQPRRVA 825 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A VA+R+AE + G VGY +R ++ +TR++ +T+G+L R DP LS ++ Sbjct: 826 AVTVAKRVAEECGVELGQKVGYSIRFEDVTSSSTRIKYMTDGLLLREALLDPFLSRYSVI 885 Query: 121 ILDEFHERSLQADLALALLLDVQQGL-----RDDLKLLIMSATLDNDRLQQMLPEAPVVI 175 I+DE HER++ D+ L LL +VQ LKL+IMSA+LD + A V Sbjct: 886 IVDEAHERTIHTDVLLGLLKNVQNARCQGVKFPSLKLIIMSASLDARGFSEYFGGARSVY 945 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 +GR FPV+ Y D A+ L + G +L+FL G EI+ V+ + R Sbjct: 946 IQGRQFPVDIFYTHHAEPDYVDAALITIFQIHLEEGPGDILVFLTGQEEIESVERLVQER 1005 Query: 236 I------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 + +L P++ +L Q KA +PAP G RKV+LATNIAETS+TI GI+ V+D Sbjct: 1006 LRQLPEGSQKLLTVPIFSSLPSEQQMKAFMPAPAGFRKVILATNIAETSVTIPGIKYVID 1065 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSE 349 + ++ TG+ L + S+A QR+GRAGR PG L + + + A +E Sbjct: 1066 PGVVKARTYNAHTGIESLDIVKTSKAQALQRSGRAGRERPGKCFRLYPESEFGQLADSTE 1125 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLS-AQ 407 PEI + +LS ++++L G D +L++P + ++ + L +LGA+ + +LS Sbjct: 1126 PEIKRCNLSNVILQLKALGVDDIIGFDFLEKPSRMAIVKSLEQLFLLGAITDDSKLSDPI 1185 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQ 466 G +MA L DP + L+ A + A+L + + Sbjct: 1186 GHQMARLPLDPVYSKALILASQFNCLEEMLIAVAMLSVESIFYTPREKLEEARTAMKCFS 1245 Query: 467 QRSQQLLKRLNVRGGEAD--------------SSLIAPLLAGAFADRIARRRGQDGRYQ- 511 + +NV + + F + + R +D Q Sbjct: 1246 SPEGDHITLINVYRASDEFVEKIKQGNDKEKTEKKLRKWCKENFINSRSLRHARDIHSQI 1305 Query: 512 --------------------------------------------LANGMGAMLDANDALS 527 LA+G + + L Sbjct: 1306 RRHAEQMGLCVASCGDDMLQFRRCLAASFFLNAALKQPEGTYRALASGQSVRIHPSSVLF 1365 Query: 528 R--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 R E +I L+Q I +D L + PQ Sbjct: 1366 RTKPECIIFNELVQT---NHCYIRNITRIDFLWLPELAPQYYAVQ 1407 >UniRef50_B9WE17 Pre-mRNA-splicing factor ATP-dependent RNA helicase, putative n=2 Tax=Candida RepID=B9WE17_CANDC Length = 866 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 157/528 (29%), Positives = 253/528 (47%), Gaps = 16/528 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 SLPV + E L ++ +++ TG+GK+T LP L I +PRR+A Sbjct: 229 SLPVYSYREEFLKIINENQTLIVVGETGSGKTTQLPQYLYEAGYSQNNRIIACTQPRRVA 288 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGL 119 A +VA+R+A+ + K G+ VGY +R + T ++ VT+G+L R +DP L + Sbjct: 289 ATSVAKRVADEMQVKLGEQVGYNIRFDDNCKDGITMIKYVTDGMLLREFLQDPTLEKYSV 348 Query: 120 VILDEFHERSLQADLALALLLDVQQG--LRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 +++DE HER+L ++ L+LL D+ ++DLK++I SAT++ ++ + AP++ Sbjct: 349 IMIDEAHERTLSTEILLSLLKDIIMTTTRKNDLKIIIASATINAEKFSKFFNNAPILNIP 408 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRI 236 GR FPV+ Y P A+ + Q G +L+FL G EI+ ++E L I Sbjct: 409 GRRFPVKIHYTKQPEANYIQAAITTIFQIHMTQPLPGDILVFLTGQDEIETMEEILHDSI 468 Query: 237 G------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + +++C +Y L Q+K P RK+VLATNIAETS+TI+GI V+D Sbjct: 469 VKLGDQINPMMVCSIYANLPQELQQKIFQQTPTNTRKIVLATNIAETSITIDGISYVIDP 528 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSE 349 + ++P TG+ L+ S+AS QRAGRAGR+ PG L K + Sbjct: 529 GYVKQNVYNPITGMESLVVVPCSRASADQRAGRAGRVGPGKCFRLFTKWSFYNELDLNQQ 588 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQG 408 PEI + +L+ +++ LL G +D ++D P ++ A LL LGAL +L+ G Sbjct: 589 PEIQRVNLTSVILLLLSLGINDLLGFEFMDPPSKQAIIKALNLLYALGALNSQGKLTKIG 648 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQ 466 +KM+ DP ++++ D I A+L E D + + + Sbjct: 649 KKMSEFPLDPIFTKCILTSDKFDNTKQIISIIAMLNESSNLFYRPKDKKELADKRKQEFN 708 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 LN+ DS F +R ++ QL Sbjct: 709 DSQGDQFMLLNIWQQWVDSGYSVQWCQDYFIQYKTMKRIKNIYEQLIR 756 >UniRef50_Q5ANN5 Likely spliceosomal DEAD box ATPase n=3 Tax=Eukaryota RepID=Q5ANN5_CANAL Length = 865 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 161/527 (30%), Positives = 250/527 (47%), Gaps = 15/527 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK--IILLEPRRLA 60 SLPV + E L ++ +++ TG+GK+T LP L I +PRR+A Sbjct: 228 SLPVYSYREEFLKIINENQTLIVVGETGSGKTTQLPQYLHEAGYSRNNQVIACTQPRRVA 287 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGL 119 A +VA R+A + K G+ VGY +R + T ++ VT+G+L R +DP L Sbjct: 288 ATSVANRVANEMQVKLGEQVGYNIRFDDNCKDGVTVIKYVTDGMLLREFLQDPTLGKYSA 347 Query: 120 VILDEFHERSLQADLALALLLDVQQGLR-DDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 +++DE HER+L ++ L+LL DV R DDLK++I SAT++ ++ Q AP++ G Sbjct: 348 IMIDEAHERTLSTEILLSLLKDVMMTTRKDDLKIIIASATINAEKFSQFFNNAPILNIPG 407 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIG 237 R FPV+ Y P A+ + Q G +L+FL G EI+ ++E L I Sbjct: 408 RRFPVKIHYTKQPEANYIQAAITTIFQIHMTQPLPGDILVFLTGQDEIETMEEILRDSIL 467 Query: 238 S------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 +++C +Y L Q+K P P RK+VLATNIAETS+TI+GI V+D Sbjct: 468 KLGDQIDPMIVCSIYANLPQELQQKIFQPTPSNTRKIVLATNIAETSITIDGISYVIDPG 527 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQSEP 350 + ++P TG+ L+ S+AS QRAGRAGR+ PG L K + +P Sbjct: 528 YVKQNVYNPTTGMESLVVVPCSRASADQRAGRAGRVGPGKCFRLFTKWSFYNELDSNQQP 587 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQ 409 EI + +L+ +++ LL G +D ++D P ++ A LL LGAL +L+ G+ Sbjct: 588 EIQRVNLTSVILLLLSLGINDLLGFEFMDPPSKEAIIKALNLLYALGALNTQGKLTKTGK 647 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQ 467 KM+ DP ++++ D I A+L E D + + + Sbjct: 648 KMSEFPLDPVFTKCILTSDKFDNTKQIISIIAMLNESSNLFYRPKDKKELADKRKQEFND 707 Query: 468 RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 L + DS F +R ++ QL Sbjct: 708 LQGDQFMLLKIWQQWVDSGYSVQWCQDYFIQYKTMKRIKNIYEQLIR 754 >UniRef50_B2U9W9 ATP-dependent helicase HrpA n=11 Tax=Betaproteobacteria RepID=B2U9W9_RALPJ Length = 1333 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 203/858 (23%), Positives = 348/858 (40%), Gaps = 120/858 (13%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-----HPGINGKIILLEPR 57 +LPV+A E+ A+ V++S TG+GK+T LP L+ G G I +PR Sbjct: 70 ALPVSARRDEIAQAIAANQVVIVSGETGSGKTTQLPKICLSIGRGIGAGGTGLIGHTQPR 129 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AA + A+R+A+ + G+ VG+++R + + ++++T+G+L Q DP L Sbjct: 130 RIAATSTAKRIAQEIGTPVGEHVGFQVRFNDTLSAGASVKLMTDGILLAETQNDPLLRAY 189 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPV 173 +I+DE HERSL D + L + R DLKL+I SAT+D R + APV Sbjct: 190 DTIIIDEAHERSLNIDFLIGYLKQLLP-RRPDLKLIITSATIDAKRFAEHFAGPKGPAPV 248 Query: 174 VISEGRSFPVERRYLPLPAHQ-----RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 + GR +PVE RY P+ + +A+ A E+ R+ G +L+FLPG EI+ Sbjct: 249 IEVSGRLYPVEVRYRPIQRDEKDKERDLYEALVDAVDELAREGPGDVLIFLPGEREIREA 308 Query: 229 QEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 E L + + PL+ LS+ +Q + P R++VLATN+AETSLT+ GIR VV Sbjct: 309 AEALRKHHPAHTEILPLFARLSVQEQERVFR--PSNARRIVLATNVAETSLTVPGIRYVV 366 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D RV R+ R + +L + VSQA+ QRAGR GR+ G+ + L + + Sbjct: 367 DTGLARVKRYSYRNKVEQLQIEPVSQAAANQRAGRCGRVADGVCIRLYDEADFIARPRFT 426 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQ 407 +PEIL+S L+ +++ + +D Q +++ P + +LLQ LGA++ E L+ Sbjct: 427 DPEILRSSLAAVILRMKALRLTDVEQFPFIEPPLGRAIADGYQLLQELGAVDDENALTPL 486 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQ 466 G+++A L DPR+A M+++ ++ IA+ L + PR +L + + Sbjct: 487 GKQVARLPLDPRVARMILAGRDHQCLREMLIIASALSVQDPRERPQELQQQADQAHRQFA 546 Query: 467 QRSQQLLKRLNVRG-------GEADSSLIAPLLAGAFADRIARRRGQDGR---------- 509 + L + + + + + F + R +D Sbjct: 547 DEKSEFLGWVKLWKWFEEAVAHKKSNKQLQEQCRSHFLSHVRLREWRDVHSQLHTTVAEQ 606 Query: 510 ---------------------------------------YQLANGMGAMLDANDALSRH- 529 Y A G+ L ++R Sbjct: 607 GWKLNESDPTYEQLHLALLTGLLGNIGVRIEEADGKGREYLGARGIKFFLWPGSVIARKA 666 Query: 530 -EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRR 587 +W++ L++ S ++ + + + L++ S W+ G + A+ R Sbjct: 667 GKWVVGGELIETSRLFG---RTLARIEPEWVEKVGAHLLKVSWSDPHWEKKAGQVMAFER 723 Query: 588 LQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRLLCAAK 642 + L + + E + + G + L + ++L + Sbjct: 724 GTLYGLPIYQQRRVHFGPMQPKEAREMFIRRALVDGEFETRLPFFTHNQRLVREIENLEH 783 Query: 643 WLPEYDWPAVDDESLLAAL--------------ETWLLPHM-TGVHSLRGLKSLDIYQAL 687 D VDDE + A E W G S + L L+ + Sbjct: 784 KSRRQDVL-VDDELIYAFYDSQIPADIYNTVSFERWYAEAASAGGKSGQKLLYLNRDDLM 842 Query: 688 RGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDN-----PPALAVRMQEMFGEATNPT 742 R P + G + + YH + L V + + P Sbjct: 843 R----HEAAGITTDLFPKVLPIA-GIDMGLTYHFEPGSPRDGVTLTVPL---YALNQVPA 894 Query: 743 -----IAQGRVPLVLELL 755 + G + + LL Sbjct: 895 QRTEWLVPGMLKEKVHLL 912 >UniRef50_Q31H28 ATP-dependent helicase HrpA n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31H28_THICR Length = 1342 Score = 681 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 201/817 (24%), Positives = 347/817 (42%), Gaps = 99/817 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 +LPVA E+L + V+++ TG+GK+T +P L G+ G+I +PRRLAA Sbjct: 97 NLPVAERRDEILELIQNNQVVVIAGETGSGKTTQIPKICLEAGRGVFGRIGCTQPRRLAA 156 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+AE L G VGY++R + V + L+V+T+G+L IQ DP L+ +I Sbjct: 157 RSVAERIAEELGSSLGQLVGYQVRFHDQVHQQSLLKVMTDGILLAEIQNDPYLNQYDTII 216 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERS+ D L +L + R DLKL+I SAT+D +R AP++ GR++ Sbjct: 217 IDEAHERSINIDFLLGILKKLLPKRR-DLKLIITSATIDTERFASFFEGAPIIEVSGRTY 275 Query: 182 PVERRYLP-----LPAHQRFDDAVAVATAEMLRQES-----GSLLLFLPGVGEIQRVQEQ 231 PVE RY P F+ + A L + S G +L+F G +I+ E Sbjct: 276 PVEVRYNPLVKIEDDEGNEFEQDIPTAIVYALEELSEIDPFGDVLVFQVGERDIKETAEV 335 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 L + + + PLY LS+ +Q K + R+V+L+TN+AETSLT+ GI+ V+D Sbjct: 336 LRKQNLKNTEIVPLYARLSMAEQNKVFQTS--QKRRVILSTNVAETSLTVPGIKFVIDPG 393 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R++R+ R+ + RL +++SQAS QRAGR GR+ G+ + L ++ + + PE Sbjct: 394 LVRISRYSVRSKVQRLPIEKISQASANQRAGRCGRVSSGVCIRLYDEDDFKSRPEFTPPE 453 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQK 410 I ++ L+ +++++ Q +++ P + R L +GAL+ + RL+ G+ Sbjct: 454 IHRTSLATVILQMTQMKLGSVKHFPFIEPPEDKAINDGFRQLHEIGALDEKRRLTESGRH 513 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRS 469 +A L DPR+A M++ + + A IAA + + PR N A ++ ++ Sbjct: 514 LAKLPLDPRMAKMVLEGQKNGVLAEVLIIAAAISIQDPRDMNESNRQAANQAHKVFEDPR 573 Query: 470 QQLLKRLNVR------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA---------- 513 L LN+ + + L F + + D +QL Sbjct: 574 SDFLFFLNLWRFYEDKRRHLSQNKLRKLCKTNFLSYLRMKEWHDLFFQLEMSLKRISVKV 633 Query: 514 ----------NGMGA--MLDANDALSRHEWLIAPLLLQGSASPDARILLALL-------- 553 G L +++ H L+A LL + D L Sbjct: 634 GELHLYEEVKKGKTVTERLSDTHSMAVHRSLMAGLLGNIAMRDDENSYLGARNTKLFIHP 693 Query: 554 ------------------------------VDIDELVQRCPQLVQQS-DTVEWDDAQGTL 582 +D++ + P L++ S W G + Sbjct: 694 SSVLFKRKPKWMLSGELVETTKLYARNNAIIDVNWVEAIAPHLIKHSYTDPHWQKKAGQV 753 Query: 583 KAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRL 637 A+ + + L + + + E + L +G S + + +++ + Sbjct: 754 GAFESVTLYGLPIVNRRRCNYGPINPKEARKIFLRHGLVEGELNSKVAFFVHNQKMIAEI 813 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIY---QALRG----- 689 L D+ V+++ L + H+ + + +AL+ Sbjct: 814 HHIESKLRRPDFL-VEEDVLYDFYAKHIPEHIYSLPAFEKWVRKTEKTDPEALKALYLTQ 872 Query: 690 --LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 LL RLD E P + + + Y + Sbjct: 873 EFLLKQSYDSRLDVEYPDQVQIKNQLDLDVDYFFEPG 909 >UniRef50_UPI000050FB42 ATP-dependent helicase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FB42 Length = 902 Score = 681 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 271/892 (30%), Positives = 406/892 (45%), Gaps = 97/892 (10%) Query: 3 SLPVAAVLPELLTA-LDCAPQVLLSAPTGAGKSTWLPLQLLAH----PGINGKIILLEPR 57 LP AA++ +L +A + P++++ AP G GK+T +P + H + G+II+ +PR Sbjct: 15 GLPAAALIDQLASAAVGRFPRLVVEAPPGTGKTTLVPPLIAEHLHDPGDMPGRIIVTQPR 74 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AAR A+RLA L + G+ +G+ +R ++ TR+E VT GVL + RDPEL+GV Sbjct: 75 RMAARAGARRLATLTGTRLGEDIGFTVRGESRTSARTRIEFVTTGVLLARLLRDPELAGV 134 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP-------- 169 VILDE HER L DL AL ++ LR+DL L++MSATLD + L Sbjct: 135 SAVILDEVHERHLDTDLTFALCRELVD-LREDLGLIVMSATLDATLWARRLGAGDNAGGA 193 Query: 170 --EAPVVISEGRSFPVERRYLPLPAH---------QRFDDAVAVATAEMLRQESGSLLLF 218 A ++ + P+E R+ P D + SG +L+F Sbjct: 194 ESPATLLSVSAQVHPLEVRWAPAKQRPLDARGVTWDFLDHVARTTVDALSTHTSGDVLVF 253 Query: 219 LPGVGEIQRVQEQLASRIG--SDVLLCPLYGALSLNDQRKAILP--APQGMRKVVLATNI 274 PG E++ + ++A + + L G +Q + P A G R+V+++T++ Sbjct: 254 APGAREVEEIASRIARSLPATPATEVHTLLGRTPAKEQDAILKPQAAEVGRRRVIVSTSV 313 Query: 275 AETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLH 334 AE++LT+ G+ +VVD R R D R G++ L+T R S+AS TQRAGRA RL PG Sbjct: 314 AESALTVPGVSIVVDSGLARGPRLDTRRGMSGLVTTRESKASGTQRAGRASRLGPGTVYR 373 Query: 335 LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQ 394 +++ + EI SDL+ ++ L WG D + D P A L Sbjct: 374 CLSESDWASLPEHTPAEIATSDLTSAVLTLAVWG-GDTDLLP--DPMPEGPYRLAVDNLV 430 Query: 395 MLGALEGER-------------------------LSAQGQKMAALGNDPRLAAMLVSAKN 429 LGALE ++ G+ +A + A L Sbjct: 431 ALGALEAAEPVQGAGPDQGAGAERDAGAEEASVTVTELGRAIARIPASVWSARGLFDGAA 490 Query: 430 DDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLN------------ 477 A AA+ A++E R +DL + +R Q +KR Sbjct: 491 MLSPAAAAEAIAVIESEQRAPGADLVATLRELRRGKDRRFAQDVKRFAGLAAEFSNPQDA 550 Query: 478 ----------VRGGEADSSLIAPLLAGAFADRIARRRGQD-GRYQLANGMGAMLDANDAL 526 R G + ++A A +I R R Y LA+G A L N +L Sbjct: 551 ADQGTADQGSARAGSLSPDDLGLVVALAHPMQIGRLRSSSASEYLLASGTAATLPRNSSL 610 Query: 527 SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWR 586 WL + A I A+++D D L+ +T + QG ++A R Sbjct: 611 QGSPWLAISDVGLSGGR--AVIRAAVVIDEDTAELAGAGLMATEETATF--EQGKVRAVR 666 Query: 587 RLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGL-SVLNWTAEAEQLRLRLLCAAKWLP 645 R ++G + + P+ K S + A+ +R +G +L + E+LR RL Sbjct: 667 RTRLGGIELTATPI-KASPELARSAIAASVRQRGAREILRPSEAFEELRSRLGLLHAVYG 725 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 705 WP V L L W + V +D+ ALR LL W RLD +P Sbjct: 726 -TPWPDVRWSQLSQTLTQWCPAALDRVARGADPSRVDLVSALRTLLPWPQASRLDELVPV 784 Query: 706 HYTVPTGSRIAIRY----------HEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELL 755 VP+GSR+ + Y + P LAV++QE FG T P++ +GRVP+V+ LL Sbjct: 785 SVEVPSGSRVRLDYPDPDRVDSESDSEQGPVLAVKLQECFGWQTAPSVCEGRVPVVVHLL 844 Query: 756 SPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 SPA+RPL +T DL+ FW AY V+ E +GRYPKH WP+DP P R TK+ Sbjct: 845 SPARRPLAVTSDLASFWANAYSHVRAENRGRYPKHAWPEDPLTAPPMRGTKR 896 >UniRef50_B6AHK6 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AHK6_9CRYT Length = 1052 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 163/535 (30%), Positives = 255/535 (47%), Gaps = 29/535 (5%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAA 61 +LPV A+ ELL + P V++ TG+GK+T L L N G I +PRR+AA Sbjct: 307 TLPVFAMKEELLNLIYEHPIVVVVGETGSGKTTQLTQYLYEAGYSNYGIIACTQPRRVAA 366 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R++E +N K G VGY +R ++ T ++ +T+GVL R DPEL +VI Sbjct: 367 VSVAKRVSEEMNVKLGTKVGYTIRFEDLTSKETVIKYMTDGVLMRESLTDPELERYSVVI 426 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ + + + R D +L++ SAT+D+D+ AP+ GR+F Sbjct: 427 MDEAHERSLSTDVLFGIFKSILRRRR-DFRLIVTSATMDSDKFSNFFGRAPIFEIPGRTF 485 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQES---------------GSLLLFLPGVGEIQ 226 PV +YL + + V G +L+F+ G +I+ Sbjct: 486 PVTIQYLRTQSEDYIESVVRQCLQIHCSDMRCNLQKSGNSEEISNGGDILIFMTGQEDIE 545 Query: 227 RVQEQLASRIG-------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSL 279 +A ++ S +L+ P+Y L + Q K P+ RKV++ATNIAETSL Sbjct: 546 ATCWLIAEKMSFLVEDGVSPLLVLPIYSQLPSDLQIKIFQPSI--YRKVIVATNIAETSL 603 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 T++GIR V+DC +V ++P+ G+ L +SQA+ QR+GRAGR PGI + ++ Sbjct: 604 TLQGIRFVIDCGFCKVKVYNPKIGMDSLQVVPISQANAQQRSGRAGRTAPGICYRMYTEK 663 Query: 340 QAE-RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 + PEI +++L+ +++ L G +D ++D P ++L + L LGA Sbjct: 664 AFLGEMLTSNIPEIQRTNLANVVLLLKTLGFNDILSFPFMDAPSESSILTSLYQLWSLGA 723 Query: 399 L-EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGV 456 L + L+ G MA DP LA L++A + + I AIL P Sbjct: 724 LDDDGNLTNIGNLMAKFPLDPPLAKTLITASELNCISEIIVIVAILSVPTIFFRPRGREE 783 Query: 457 AFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ 511 + + L LNV + F A ++ QD YQ Sbjct: 784 ESDATREKFVVPESDHLTLLNVYLQWKRHNYNPKWCEKHFLHHKALKKAQDVFYQ 838 >UniRef50_A0L8U8 ATP-dependent helicase HrpA n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8U8_MAGSM Length = 1305 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 201/781 (25%), Positives = 342/781 (43%), Gaps = 81/781 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 LP+++ + A+ ++LS TG+GK+T LP L G++G I + +PRR+AA Sbjct: 79 QLPISSKREAIQQAIAQHQIIVLSGETGSGKTTQLPKICLELGLGVHGYIGVTQPRRIAA 138 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +AQ LA L G+ VGY++R + VG + ++V+T+G+L Q+D LS +I Sbjct: 139 SGIAQFLASDLGTPLGEKVGYKVRFHDQVGEHALVKVLTDGMLLAETQQDRFLSRYEAII 198 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L LL + R DLK++I SATLD D+ AP++ GR++ Sbjct: 199 IDEAHERSLNIDFLLGLLKGITV-RRPDLKIIISSATLDTDKFAAHFNHAPIISVSGRTY 257 Query: 182 PVERRYLP-----LPAHQRFDDAVAVATAEMLRQ-ESGSLLLFLPGVGEIQRVQEQLASR 235 PV RY P P + +A+ A E+ G +L+FLPG EI+ E L Sbjct: 258 PVAVRYNPLDEKNEPDSDQRMEALLFAVEELFEDLPDGDVLIFLPGEREIKEAAEALRKH 317 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + V + PLY LS +Q++ P R+++L+TN+AETSLT+ I V+D R+ Sbjct: 318 HPAHVEIVPLYARLSAKEQQRIFN--PGSKRRIILSTNVAETSLTVPRIHGVIDTGLARM 375 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +RF RT + RL +R+SQAS QR GR GRL GI + L +++ + ++PE+L++ Sbjct: 376 SRFSTRTQVQRLPIERISQASANQRKGRCGRLAAGICIRLYSEDDFNQRPLYTDPEVLRT 435 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQML-GALEGERLSAQGQKMAAL 414 L+ +++ + DP + ++D P + RLL+ L G + E L+ G+++A L Sbjct: 436 SLAAVILTMKALKLGDPHKFPFIDAPKPTAIREGIRLLKELDGLDDNENLTDIGRQLAHL 495 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAIL-EEPPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 DPRLA ML++A+ +AA L + PR ++ + + + + Sbjct: 496 PLDPRLARMLLAAERFHCLQELLILAAALSTQDPREFPEAEKGGAKQHHARFSEPRSEFI 555 Query: 474 KRLNVRG-------GEADSSLIAPLLAGAFADRIARRRGQDGRYQL-------------- 512 RL + + + L + + R QD +QL Sbjct: 556 GRLRLWRHIEEMAEQARSKTQLRNALKKQYLSPLRVREWQDITHQLTRTVKELGLKLNEA 615 Query: 513 ------------------------------ANGMGAMLDANDAL--SRHEWLIAPLLLQG 540 G+ + L +W++A L++ Sbjct: 616 PGDYAAIHKALLAGLLGNLGMKGEKHQYDGVRGLSFHIFPGSELFGKSPKWVVAAELVET 675 Query: 541 SASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV---K 596 S L ++ + + + P LV++ W+ + R+ + LT+ + Sbjct: 676 SKL---YARLLAQIEPEWVEEVAPHLVKKHPFDPHWEKRAAQTMVYERVTLFGLTLIPKR 732 Query: 597 VQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDD 654 P A + + ++ G S + L E + A DD Sbjct: 733 SVPYAPIAPADARAMFIHNGLVAGDMHSNAPFYQHNRALIEEAEGLEHRTRERGYLA-DD 791 Query: 655 ESLLAALETWLLPHMTGVHSLRGLK----SLDIYQALR-GLLDWGMQQRLDS-ELPAHYT 708 ++L + L P + + +L + + + + + LD + P H T Sbjct: 792 QALFDFFDGVLPPDINNLQALDQWRRSAERKNPKALFLPREVVFQQRANLDDAQFPGHIT 851 Query: 709 V 709 + Sbjct: 852 L 852 >UniRef50_Q0F3B4 ATP-dependent helicase HrpA n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3B4_9PROT Length = 1289 Score = 680 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 195/748 (26%), Positives = 321/748 (42%), Gaps = 79/748 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV+ + A+ V+++ TG+GK+T +P L G+ G I +PRR+A Sbjct: 69 AELPVSEKRETIAAAIAKHQVVIIAGETGSGKTTQIPKICLELGRGMAGLIGHTQPRRIA 128 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+AE + G+ VGY++R + G + ++++T+G+L IQ DP L + Sbjct: 129 ARSVATRIAEEMGSPIGEHVGYKVRFSDHTGTDAYIKLMTDGILLAEIQSDPLLLAYDTI 188 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT++ R EAPV+ GR+ Sbjct: 189 IIDEAHERSLNIDFLLGYLKQLLPKRR-DLKIIITSATINTGRFSAFFNEAPVIEVSGRT 247 Query: 181 FPVERRYLP-----LPAHQRFDDAVAVATAEM-LRQESGSLLLFLPGVGEIQRVQEQLAS 234 PVE RY P + A+ A E L G +L+FLPG EI+ V E L Sbjct: 248 HPVEIRYRPLQGDDDDRDRDLPQAIMDAVDEAALIDRFGDILIFLPGEREIRAVTEALHQ 307 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 + + PL LS +Q + R++VLATN+AETSLT+ GIR V+D R Sbjct: 308 HKMTQTEVIPLLSRLSPAEQDRVFQKHTG--RRIVLATNVAETSLTVPGIRFVIDSGLAR 365 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQ 354 ++R+ RT + RL + VSQAS QRAGR GR+ GI + L ++E + Q++PEI + Sbjct: 366 ISRYSTRTKVQRLPIEPVSQASANQRAGRCGRVAAGICIRLYSEESFDNRPEQTDPEIRR 425 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAA 413 ++L+ +++++ G D A ++D P + LL+ L A++ +R L+ G+K+ Sbjct: 426 TNLASVILQMSNLGLGDVAAFPFMDAPEKPAIRDGYLLLEELQAVDSKRELTLIGKKLVR 485 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQL 472 L DPR+ ML+ A ++ IA+ L + PR D+ + + Sbjct: 486 LPVDPRIGRMLLQADSERSLHEVLIIASALSVQDPRTRPMDMQQQADEKHRLFADPASDF 545 Query: 473 LKRLNVRGGEADSS------LIAPLLAGAFADRIARRRGQDGR----------------- 509 L L + + + + L F I R D Sbjct: 546 LVWLKLWDWYHEQARHLSRSKLRKLCHDRFLSYIRLREWHDLHSQLLAVVREMKMTPNKQ 605 Query: 510 ----------------------------YQLANGMGAMLDANDALSR--HEWLIAPLLLQ 539 Y A + L AL + +W+I L++ Sbjct: 606 PATADAIHRALLAGLLSHVGLYDEKKKQYLGARNLRFSLFPGSALCKKPPKWVICGELVE 665 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQ 598 S A +++ L + P LV +S W + + A+ +L + + + Sbjct: 666 TSRLFG---RTAAVINPAWLEELAPHLVNRSYSEPHWSRKRAQVAAYEKLSLYGIPIIAS 722 Query: 599 PL---AKPSEDELHQAMLNGIRDKGLSVLNWTAEA----EQLRLRLLCAAKWLPEYDWPA 651 L + + + + A+A +L L D A Sbjct: 723 RLIHYGPVDPVVARELFIRHALVQ--HEFHTHAKAILHNRRLISELERLEAKQRRRDLLA 780 Query: 652 VDDESLLAALETWLLPHMTGVHSLRGLK 679 +++ + + + H+ + Sbjct: 781 -EEQVVFDFFDAIIPAHVFTGKLFEQWR 807 >UniRef50_B7GWG2 ATP-dependent helicase HrpA n=17 Tax=Acinetobacter RepID=B7GWG2_ACIB3 Length = 1294 Score = 679 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 192/828 (23%), Positives = 348/828 (42%), Gaps = 104/828 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQ-LLAHPGINGKIILLEPRRLAA 61 LPV L+ A+ ++++ TG+GK+T LP +LA G+ G I +PRRLAA Sbjct: 68 DLPVTQYTDRLIEAIQKHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGMIGHTQPRRLAA 127 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+V+QR+AE + EK G+++G+++R ++ + ++T+G+L + D LS +I Sbjct: 128 RSVSQRIAEEVGEKLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTII 187 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D + L + R DLK+++ SATLD +R AP+ EGRS+ Sbjct: 188 IDEAHERSLNIDFIMGYLKQLLPK-RPDLKVIVTSATLDVNRFSNYFNNAPIFEVEGRSY 246 Query: 182 PVERRYLPLPAHQ--------------RFDDAVAVATAE--MLRQESG-----SLLLFLP 220 PVE RY P+ AV A E +E G +L+F Sbjct: 247 PVEVRYRPISEMNIGGSDDDEFDDFEENLPRAVVQAVEECFADAEEKGHPEHADILIFSS 306 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 EI+ +QE L + PLY L++++Q+K P+ +G R++++ATN+AET+LT Sbjct: 307 TEQEIRELQETLQKYGPRHTEILPLYARLAVSEQQKIFSPSGKG-RRIIIATNVAETALT 365 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + IR V+D R++R++ R+ + RL + +SQA+ QR GR GR+ PG+ + L ++E Sbjct: 366 VPNIRYVIDSGFARISRYNYRSRVQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEED 425 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 +EPEI +++L+ +++++ G + +++ P + ++LL LGAL Sbjct: 426 FLSRPEFTEPEIKRTNLASVILQMQSLGLGELENFDFIEPPDFRLVNDGRKLLIELGALN 485 Query: 401 GER--LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVA 457 ++ L+ GQ MA + DPRLA M+V + + + L + PR +D + Sbjct: 486 EKKNELTKVGQMMARMPIDPRLARMIVGGAHFGVLKEILVVVSALAVQDPRERPADKQMQ 545 Query: 458 FSRNQPAWQQRSQQLLKRLNVR-------GGEADSSLIAPLLAGAFADRIARRRGQDGRY 510 + +++ L L + + F + R + Sbjct: 546 ADQKHALFKEADSDFLFYLKLWDTLNPKGEAGMSENKRRQFAKQHFLSWLRLREWKQTHQ 605 Query: 511 QL---------------------------------------------ANGMGAMLDANDA 525 QL A + Sbjct: 606 QLVELAEGLKLSFNEKPANYENLHRALLTGLLSFIANKTDERNTFMAVRQQKAKVFPAST 665 Query: 526 LSR--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTL 582 L + W++A +++ S + +D + ++ L++ W G + Sbjct: 666 LHKTNTAWVMAFEMVETSQ---VYLRTLAKIDPEWILLAARDLLKYHYFEPHWSKKAGIV 722 Query: 583 KAWRRLQIGQLTVKVQPL---AKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRL 637 A+ ++ + L ++ + L K + H+ L G +V + + Sbjct: 723 NAYAQISLFGLIIEPKRLVNFEKVDQPAAHEIFLRDALTTGNLGTVPPFLKHNLLKLEEV 782 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLK-----SLDIYQALRGLLD 692 L D VD+E++ + + + S + Y + Sbjct: 783 ERVEDKLRRRDLV-VDEETIYQFYASKIPEEIASRRSFEDWRATVEAKNPRYLYVEDDAL 841 Query: 693 WGMQQRLDSELPAHYTVPTGS-RIAIRY-----HEDNPPALAVRMQEM 734 W + + P H G R+A Y H+++ + + +Q + Sbjct: 842 WLNDRPTTQQFPDHL--HNGQLRLATTYRFDPSHDEDGATVQIPVQAL 887 >UniRef50_C1ZJL9 ATP-dependent helicase HrpA n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZJL9_PLALI Length = 1305 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 204/805 (25%), Positives = 336/805 (41%), Gaps = 89/805 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLA 60 + LP+ E L L +++ TG+GKST LP L GI+G I +PRR+A Sbjct: 80 NELPIMQRREEFLKLLSQHSVIIVCGETGSGKSTQLPKFCLEAQRGIDGLIGHTQPRRIA 139 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA RL+E L G VGY++R Q VG + ++++T+G+L IQ DP L + Sbjct: 140 ARSVAMRLSEELRAPLGQAVGYKVRFQEAVGAESYIKLMTDGILLAEIQSDPHLRRYDTI 199 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVIS 176 I+DE HERSL D L L + R DLK++I SAT+D +R Q AP++ + Sbjct: 200 IIDEAHERSLNIDFLLGYLKRLL-TQRKDLKVIITSATIDAERFSQHFEVDGKPAPIIEA 258 Query: 177 EGRSFPVERRYLP--------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 GRS+PVE Y P A+ A E Q G +L+FLP EI Sbjct: 259 SGRSYPVEILYRPILSKGDAAEDNDIDMQQAIVEAVQEATSQGFGDILVFLPTEREIHET 318 Query: 229 QEQLA--SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 286 + L R S + PLY LS +Q++ + Q R+++LATN+AE+SLT+ GIR Sbjct: 319 AKILRGGERAASHREILPLYARLSAAEQQRVFQVS-QSQRRIILATNVAESSLTVPGIRY 377 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 V+D R++R+ PR+ + RL + VSQAS QRAGR GR+ PGI L + Sbjct: 378 VIDTGTVRLSRYSPRSKIQRLPIEPVSQASANQRAGRCGRVGPGICYRLYDEADFAARDP 437 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLS 405 + PEIL+++L+ ++++ G + +LD P ++ R L LGA++ RL+ Sbjct: 438 FTVPEILRTNLAQVILKTESLGLGSLSSFPFLDPPRTESIRDGYRTLFELGAVDLDNRLT 497 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPA 464 G+K++ + DPR+A +L +A A IA+ LE + R A Sbjct: 498 ELGKKLSRIPTDPRIARVLFAADEQLCLAEMLIIASALETQDVRERPVGKQDAADEAHAK 557 Query: 465 WQQRSQQLLKRLNVR------GGEADSSLIAPLLAGAFADRIARRRGQD----------- 507 + + + L + + S + + + R D Sbjct: 558 FLDETSDFVTYLKIWDFYHELKAKLSHSQLKKACSQNYLSLTRLREWSDLHRELSELVRA 617 Query: 508 ---------------------------------GRYQLANGMGAMLDANDALSR--HEWL 532 G YQ+ G ++ +++ W+ Sbjct: 618 AGLKIRPRLQDTSAIHRAILAGFPTNIAMKTDSGEYQMGGGALGVIWPGSGMAKQKPRWI 677 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIG 591 +A ++ + + +A ++ + + LV ++ WD ++ A+ ++ + Sbjct: 678 VAAEFVETTRR---FLRIAGKIESEWVEPYVEHLVNRTYHDPHWDARSRSVVAYEKVSLQ 734 Query: 592 QLTV---KVQPLAKPSEDELHQAMLNGIRDKGLSVLN--WTAEAEQLRLRLLCAAKWLPE 646 L + + + + + + + +G + A LR L L + Sbjct: 735 GLPIVNRRKTQFGRVNAAQAQEIFIRQALVEGDYPNPPAFLAHNLALRQELEDLQARLRK 794 Query: 647 YDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSL---DIYQALR----GLLDWGMQQRL 699 A D E+ L P + L + D L+ LL + Sbjct: 795 TSLIA-DPETQAKFYAQRLPPDIYDGPRLDKWLRIATKDSPDLLKMTREDLLAQEADEDW 853 Query: 700 DSELPAHYTVPTGSRIAIRYHEDNP 724 P V + + + YH + Sbjct: 854 RERFPDQIRVGS-LQAEVEYHLEPG 877 >UniRef50_Q01ZA3 ATP-dependent helicase HrpB n=2 Tax=Acidobacteria RepID=Q01ZA3_SOLUE Length = 816 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 272/805 (33%), Positives = 415/805 (51%), Gaps = 27/805 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ ++P++L L A ++L AP GAGK+T +P LL +++LEPRRLAAR Sbjct: 27 LPIDELIPDILQHLRSANTLVLEAPPGAGKTTRVPPALLELDDRE--VLVLEPRRLAARL 84 Query: 64 VAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILD 123 A+ +A E+ G+TVGY++R + G TRL +TEGVLTR + DP L V V+LD Sbjct: 85 AARYVAGERQERVGETVGYQVRFEEVAGARTRLRFLTEGVLTRRLLSDPALDRVACVVLD 144 Query: 124 EFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPV 183 EFHER L+ DLALALL +Q+ R DLKL++MSATLD + L +A ++ S GR + Sbjct: 145 EFHERHLEGDLALALLRRLQRTRRPDLKLVVMSATLDTAPIAGYLDDARILRSSGRQHAL 204 Query: 184 ERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI-GSDVLL 242 E Y P A + A G L+FLPG EI+R Q A+ + L Sbjct: 205 EIEYTPHSAAPLDEQVAAALERLAASGFPGHALVFLPGAFEIRRAQTACAAMARRRNWRL 264 Query: 243 CPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRT 302 PLYG S +Q +A+ P+ + K++L+TN+AE+S+TI+G+ V+D RVA P + Sbjct: 265 LPLYGDQSPEEQDRAVAPSAE--TKIILSTNVAESSITIDGVSAVIDSGLARVASHSPWS 322 Query: 303 GLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLM 362 GL L R+SQAS QRAGRAGR PG ++ L + R AQ P+IL+ DL+ + Sbjct: 323 GLPTLQVARISQASANQRAGRAGRTGPGRAIRLYPLDDFARRPAQDVPQILREDLAPTAL 382 Query: 363 ELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLAA 422 L +D + WLD PP + A+ LL+MLGA G ++MA PRLA Sbjct: 383 LLQAM-ETDLGSLDWLDAPPAAAIEHARELLRMLGASGG-----TAREMARYPLHPRLAR 436 Query: 423 MLVSAKNDDEAATAAKIAAILEE----PPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLN- 477 ++V A+ A IA +L P R+ + + W + +L+++LN Sbjct: 437 LIVEARRRGVPQEGAAIAGLLSAGERLPQRVPHGSRSDLLVLLESEWSPYAARLVRQLNG 496 Query: 478 --VRGGEADSSLIAPLL---AGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWL 532 RGG + LL AF DR+ARRR Q QLA+G A L N L+ + + Sbjct: 497 GAARGGLRNVEREDALLISVLTAFPDRVARRR-QGSDLQLASGSSAQLAPNSTLT-ADLM 554 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQ 592 +A + LA ++ + LV P +++++T+EW + ++A L Q Sbjct: 555 VAVEAEDRKDQGSPLVRLASAIEPEWLVDLFPDRLRETNTLEWQRSGERVEAVTSLLFDQ 614 Query: 593 LTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAV 652 + ++ + P + + + + GL E + R+ AA+ + Sbjct: 615 IPLETRR-TTPDPEAAGVFLAHKAVEAGLGRFADMEEIAAFQSRVNFAAQH---GAVARL 670 Query: 653 DDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTG 712 DD ++ AAL + + +A+ + ++ L+ P+ +P G Sbjct: 671 DDAAIEAALAQLAAGLKSFSELEAAAGRGGLLRAIEQAMPGPSRRLLEELAPSSIKLPRG 730 Query: 713 SRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFW 772 ++ + Y PP +A R+Q+ FG P + +G+ PLV+ LL+P QRP+Q+T DL+ FW Sbjct: 731 RQVRVHYEAGQPPWIASRLQDFFGMRETPAVGRGKSPLVIRLLAPNQRPVQMTSDLAGFW 790 Query: 773 KGAYREVQKEMKGRYPKHVWPDDPA 797 + Y +V++E+ RYPKH WP+DP Sbjct: 791 ERLYPQVRRELARRYPKHSWPEDPL 815 >UniRef50_C8QXF3 ATP-dependent helicase HrpA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXF3_9DELT Length = 1312 Score = 677 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 204/839 (24%), Positives = 338/839 (40%), Gaps = 125/839 (14%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LP+A E++ A+ P V+++ G+GK+T +P LA G KI +PRR+A Sbjct: 22 AELPIADFREEIIAAIISHPVVIIAGEPGSGKTTQIPKMCLAAGRGRQQKIGCTQPRRIA 81 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A ++A RL + L VGYR+R + TR++ +T+G+L Q D +L+ + Sbjct: 82 AISMAARLRDELGPAGEVLVGYRIRFSDHTSRATRVKFMTDGILLAETQHDRQLADYDTI 141 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L +L ++ R DLK++I SAT+D ++ + +APV+ GR+ Sbjct: 142 IVDEAHERSLNIDFLLGILKELL-KRRPDLKVIITSATIDTEKFSRHFDKAPVIQVAGRT 200 Query: 181 FPVERRYLPLPA---------HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 PVE R+ P + A A + + G +L+F+P +I+ E Sbjct: 201 HPVEVRHQPPAETGGEADADEQGYTERAAAAVLEIINHEPPGDILVFMPTERDIRETAEL 260 Query: 232 LASRIGSDVL--------LCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEG 283 L +G+ + PLYG LS +QR+ P RK+V+ATN+AETS+T+ G Sbjct: 261 LEGALGAPAAAGRGGKNTIMPLYGRLSPKEQRRIFQPVKG--RKIVIATNVAETSITVPG 318 Query: 284 IRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER 343 IR VVD RVA ++PR +L V++++ QRAGR GR+ PG+ + L ++ Sbjct: 319 IRYVVDTGLARVAAYNPRARTYKLPVVPVARSACDQRAGRCGRVAPGVCIRLYGEDDYLN 378 Query: 344 AAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE- 402 + PEI++S+L+ +++ + DPA ++D P + +LL LGALEG Sbjct: 379 RPLYTPPEIVRSNLAEVILRMTALKLGDPAAFPFVDPPSARAIKDGYQLLAELGALEGPS 438 Query: 403 ----RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVA 457 +LS +G+ M+ L DP ++ M++ A++ + IAA L + PR+ +D Sbjct: 439 GGRLQLSRRGRLMSRLPLDPCISRMILEARDQNALREVCVIAAALSIQDPRIRPADKEKE 498 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEAD-------SSLIAPLLAGAFADRIARRRGQDGR- 509 + + L L + + + + F R QD Sbjct: 499 ADQVHRRFSVPDSDFLFYLKLWDTMQNVLEQTGSKARLRKFCQSHFLSFQRIREWQDIYG 558 Query: 510 --------------------------------------------YQLANGMGAMLDANDA 525 YQ G ++ + Sbjct: 559 QIGRILAGEKGFSLNHEAAAADAVHKALLSGNLRNIAQKKEKNIYQGGGGREVVIFPGSS 618 Query: 526 LS----------------------------RHEWLIAPLLLQGSASPDARILLALLVDID 557 L WL+A L++ S +D D Sbjct: 619 LYYRGGEGQAKGAKRQGRGAKEGGRPETGPTPGWLMAAELVETSRL---YARTVAAIDPD 675 Query: 558 ELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV---KVQPLAKPSEDELHQAML 613 + L++ S W+ +G + A + + L V + P A+ E + + Sbjct: 676 WIEPLARPLMRYSYSDPHWEKRRGQVVAKEKGTLFGLVVVAGRKVPFARIDPAEARRIFI 735 Query: 614 NGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTG 671 +G ++ QL L + D V D+ + E L P + Sbjct: 736 QSALVEGELKGNYHFLGHNRQLLADLKDLEERSRRRDLL-VADDRIFQFYEQRLPPEVCD 794 Query: 672 VHSLRGLKSLDIYQALR-----GLLDWGMQQRLDSELPAHYTVPTGS-RIAIRYHEDNP 724 SL L LL + L + P V G + + YH + Sbjct: 795 QASLNRLLKKRRGDTFLQLQREDLLYREPKADLMEQFPTAMQV--GQISLQLSYHFEPG 851 >UniRef50_B0TXK9 HrpA-like helicase n=2 Tax=Francisella philomiragia RepID=B0TXK9_FRAP2 Length = 1266 Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 174/795 (21%), Positives = 323/795 (40%), Gaps = 83/795 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 LPVA + ++ ++ ++++ TG+GKST LP L G G I +PRRLA Sbjct: 59 PDLPVAEKVDDIKKLIEDNQVIVVAGETGSGKSTQLPKICLDLGLGKRGLIGHTQPRRLA 118 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR++A R+A + ++ V +++R + NT ++V+T+GVL I+ D LS ++ Sbjct: 119 ARSIASRVATEIGDQ--SKVSFKIRFSDQTSENTLIKVMTDGVLLSEIKNDKFLSQYEVI 176 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L + + R DLK++I SAT+D+ + A + GR+ Sbjct: 177 IIDEAHERSLNIDFLLGCIKKILP-YRPDLKVIITSATIDHQKFIDYFQNAKDITISGRT 235 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE RY + F + G +L+FLP +I L + Sbjct: 236 YPVEIRYQNDEDFEEFSLQ-ERILYALDELGRGDVLVFLPTERDIHETLAYLNKQDLRFT 294 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 + PL+ LS DQ K P +R+V+LATN+AETSLT+ I+ V+D R++R+ Sbjct: 295 EVLPLFSRLSNKDQNKIFNP-EGSVRRVILATNVAETSLTVPRIKYVIDSGLARISRYSY 353 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 RT + RL +++SQAS QRAGR GRL G+ + L ++E ++PEIL+++L+ + Sbjct: 354 RTKVQRLPIEKISQASANQRAGRCGRLSAGVCIRLYSEEDFNNRKEYTDPEILRTNLASV 413 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-----ERLSAQGQKMAALG 415 ++++L ++D P + +LL L A+ +++ G KMA + Sbjct: 414 ILQMLFLKLGSIQDFPFIDSPDSRFVKDGFKLLFELQAISELNYSKPKITDDGMKMAIMP 473 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLK 474 DP+LA +++ + I + L + PR + + +S + Sbjct: 474 LDPKLAKIVIEGHRQNTLREIVSIVSFLSVQDPRERPLNFQQKADEKHAIDKDKSSDFIA 533 Query: 475 RLNVRGGEA------DSSLIAPLLAGAFADRIARRRGQDG-------------------- 508 LN+ + F + D Sbjct: 534 ILNLANRLNSDLKSLSNREKKEYFKKNFISPVRFNEWNDIYRQIVEVVHQFKWKLSSNEK 593 Query: 509 -------------------------RYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGS 541 Y A G+ + + ++ +WL++ +++ + Sbjct: 594 LNYENLHKAIASGFLSNVGFNYENAEYLGARGLKFFIFPGSSQFKAKPKWLLSSEIVETT 653 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP- 599 ++ + L L+++ D W + + R+ + L + + Sbjct: 654 K---TYARNVAKIEPEWLESLAEHLIKKHYDEPVWSKKRRAVVVNERVTLYGLEIVSKRS 710 Query: 600 --LAKPSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDE 655 +K + E + + G S + + +L ++ D VD+E Sbjct: 711 VQYSKINPQEAREIFIREALVNGDFDSKAYFYQQNLKLINQVEELENKSRRKDIL-VDEE 769 Query: 656 SLLAALETWLLPHMTGVHSLRGLKSLDIYQA-------LRGLLDWGMQQRLDSELPAHYT 708 + A ++++ + + + + L+ ++ + P T Sbjct: 770 VMFAHYDSFIPDDVCSGATFDKWLKSVTKEQQKGFIFDIESLMQHDAKEITQQKFPDVLT 829 Query: 709 VPTGSRIAIRYHEDN 723 + + + YH D Sbjct: 830 IAD-MHLPLEYHFDP 843 >UniRef50_A4X5M6 ATP-dependent helicase HrpA n=6 Tax=Actinomycetales RepID=A4X5M6_SALTO Length = 1339 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 210/838 (25%), Positives = 342/838 (40%), Gaps = 128/838 (15%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAAR 62 LPV+ E+ A+ V+++ TG+GK+T LP L G++G I +PRRLAAR Sbjct: 81 LPVSDRRDEIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVHGLIGHTQPRRLAAR 140 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA R+AE L + G+ VGY++R + V + ++++T+G+L +Q D L +I+ Sbjct: 141 TVADRIAEELGTELGEVVGYQVRFADQVSDRSLVKLMTDGILLAELQHDRMLRQYDTIIV 200 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA-----PVVISE 177 DE HERSL D L L + R DLK++I SAT++ DR + +A PVV Sbjct: 201 DEAHERSLNIDFILGYLRQLLPRRR-DLKVIITSATIETDRFARHFADADGNPAPVVEVS 259 Query: 178 GRSFPVERRYLPLPAH------------QRFDDAVAVATAEMLRQESGSLLLFLPGVGEI 225 GR++PVE RY PL + A+ A E+ + G +L+FL G EI Sbjct: 260 GRTYPVEVRYRPLVEVGEDEDDTDEEQVRDQVQAIGDAVQELATEGPGDILVFLSGEREI 319 Query: 226 QRVQEQLASRIG-----SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 + + L + + + PLY LS +Q + AP R+VVLATN+AETSLT Sbjct: 320 RDTADALGKLVAHRPTLRNTEILPLYARLSTAEQHRVF--APHTGRRVVLATNVAETSLT 377 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + GIR VVD R++R+ R + RL + VSQAS QR GR GR GI + L + Sbjct: 378 VPGIRYVVDPGTARISRYSNRLKVQRLPIEPVSQASANQRTGRCGRTSDGICIRLYDEPD 437 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + ++PEIL+++L+ +++++ G D A ++D P + LL LGAL Sbjct: 438 FQSRPEFTDPEILRTNLASVILQMTAIGLGDIAAFPFIDPPDRRTITDGVNLLHELGALN 497 Query: 401 G------ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSD 453 +RL+ G+++A L DPRLA M++ + + A IAA L + PR D Sbjct: 498 PTETDPAKRLTPLGRRLAQLPVDPRLARMVLEGERNGCATEVVVIAAALSIQDPRERPVD 557 Query: 454 LGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLI------APLLAGAFADRIARRRGQD 507 + + + + LN+ + + + + + R QD Sbjct: 558 KQAQADQAHARFADQESDFVAYLNLWRHLREQQRARSSSGFRRMCRSEYLNYLRVREWQD 617 Query: 508 GRYQL----------------------ANGMGAMLDAN--------DALS---------- 527 QL G GA L L+ Sbjct: 618 IVSQLRQALRTPERSRRRGGPATDGGERRGGGADLPEEIDTPKVHQSLLAGLLSHVGLKD 677 Query: 528 --RHEWL-----------------------IAPLLLQGSASPDARILLALLVDIDELVQR 562 RHE+L +A L++ + + V+ + + Sbjct: 678 TQRHEYLGARGAKFALFPGSALAKKPPRWVMAAELVETTRLWG---RVNGRVEPEWVEPL 734 Query: 563 CPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRD 618 LV++S W+ Q + A ++ + + + + + + Sbjct: 735 AQHLVKRSYSEPHWEKRQAAVMAVEKVTLYGVPIVSSRKVNFGRIDPVVSRELFIRHALV 794 Query: 619 KGLSVLNWTAEAEQLRLRLLCAAKW-----LPEYDWPAVDDESLLAALETWLLPHMTGVH 673 +G +W + R + VDDE++ + + + Sbjct: 795 EG----DWQTHHQFWRDNQQLLDEVTELENRVRRRDILVDDETIFQFYDERVPAEVVSGR 850 Query: 674 SLRGL------KSLDIYQALRGLLDWGMQQRLDSE-LPAHYTVPTGSRIAIRYHEDNP 724 + D+ R LL + +D P + G R+ + Y D Sbjct: 851 HFDAWWKRERRQRPDLLTFTRDLLVNAGRGGVDEVGYPDEWRA-DGVRLPLTYRFDPG 907 >UniRef50_A9WQ04 ATP-dependent helicase n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WQ04_RENSM Length = 1296 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 201/776 (25%), Positives = 328/776 (42%), Gaps = 106/776 (13%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA----HPGINGK---IILL 54 LPV+A EL+ A+ V+++ TG+GK+T +P L PG +GK I Sbjct: 9 PELPVSARREELMAAIRDHQVVIIAGETGSGKTTQIPKMCLELGLTEPGKDGKPRLIGHT 68 Query: 55 EPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPEL 114 +PRRLAAR VA+R+A L+ K G+ VG+++R V T+++V+T+G+L IQRD L Sbjct: 69 QPRRLAARTVAERIAAELDVKIGEEVGFQVRFTGEVSRQTKVKVMTDGILLAEIQRDKLL 128 Query: 115 SGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----E 170 +I+DE HERSL D L L + R DLK++I SAT+D +R Q Sbjct: 129 HRYSTLIIDEAHERSLNIDFILGYLRQILPK-RPDLKIIITSATIDPERFAQHFAIDNVP 187 Query: 171 APVVISEGRSFPVERRYLP--------------LPAHQRFDDAVAVATAEMLRQESGSLL 216 AP+ GR++PVE RY P + DAV A E+ + G +L Sbjct: 188 APIEEVSGRTYPVEIRYRPLDGSDGEPAEQSEDDSEDKDPLDAVCDAVEELSGEAPGDVL 247 Query: 217 LFLPGVGEIQRVQEQLASRIG-----SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLA 271 +F G EI+ E L R + + PL+ LSL +Q +P R++VLA Sbjct: 248 IFFSGEREIRDAAEALRGRFAHHPRLREAEILPLFARLSLAEQHAVF--SPGSRRRIVLA 305 Query: 272 TNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGI 331 TN+AETSLT+ GI+ V+D R++R+ RT + RL +R+SQAS QRAGR GR+ GI Sbjct: 306 TNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERISQASANQRAGRCGRVSDGI 365 Query: 332 SLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGC----SDPAQMSWLDQPPVVNLL 387 + L ++ + ++PEIL+++L+ +++++ G D A +++ P + Sbjct: 366 CIRLYSEADFQGRREFTDPEILRTNLAAVILQMSAIGVAREPKDVASFPFVEPPDAKAIA 425 Query: 388 AAKRLLQMLGALE-GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-E 445 LL LGAL+ +S G+++A L DPRL M+V + A +AA L + Sbjct: 426 DGVALLSELGALQPDGGISPVGRQLAQLPVDPRLGRMIVESGKRGCAREVMILAAALTIQ 485 Query: 446 PPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG------GEADSSLIAPLLAGAFADR 499 PR ++ + + LN+ E S+ L F + Sbjct: 486 DPRERPTEKRQIADEKHKRFSDENSDFTGFLNLWRYLQEKQKELSSTAFRRLCKAEFINY 545 Query: 500 IARRRGQD-------------------------------------------------GRY 510 + R QD Y Sbjct: 546 LRVREWQDLFAQLRQLAKPLNITLSTGEVDPVGLHIPVHQSLLAGLLSHLGLFDDRKREY 605 Query: 511 QLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQ 568 A G + AL +W+++ L++ S + +D + LV+ Sbjct: 606 AGARGSRFAIFPGSALFKKNPDWVMSAELVETSRLWA---RVNARIDPIWAEEVAAGLVK 662 Query: 569 QS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGLSVL 624 +S W G++ A+ ++ + + + Q + + + +G Sbjct: 663 RSYSEPHWSKRNGSVMAYEKVTLFGVPIVAQRRINYGRIDAPLSRELFIRHALVEGDWRT 722 Query: 625 --NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 + + + + + D VDDE+L + + + Sbjct: 723 HHKFFHRNQSVLAEVEELETRMRRRDL-RVDDETLFEFYDARVGAEVVSERHFDKW 777 >UniRef50_Q6FTI2 Strain CBS138 chromosome G complete sequence n=1 Tax=Candida glabrata RepID=Q6FTI2_CANGA Length = 1057 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 172/639 (26%), Positives = 274/639 (42%), Gaps = 75/639 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLA 60 SLP+ +L + +L TG+GK+T L L G I +PRR+A Sbjct: 340 SLPIYKARANVLQMIRDNQVSILIGETGSGKTTQLAQYLYEDGYTRDGGLIACTQPRRVA 399 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A+ +++K GD VGY +R ++ GP+T+++ +T+G+L R D L ++ Sbjct: 400 AMSVAKRVAQEMDKKVGDLVGYSIRFEDKTGPSTKIKFMTDGILLRETLIDENLEKYKVI 459 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D+ L LL ++ + R D+K++I SATLD ++ Q P G++ Sbjct: 460 IIDEAHERSLNTDVLLGLLKNLVKRRR-DIKIIITSATLDANKFSQFFGGLPQYKVPGKT 518 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQ--ESGSLLLFLPGVGEIQRVQEQLASRI-- 236 +PV+ + + AV+ A L +SG +L+F+ G +I E + RI Sbjct: 519 YPVQVMHTSGTVPDYVEAAVSQAVRIHLTTAIQSGDILIFMTGQEDILCCIELIKERIVD 578 Query: 237 -------------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEG 283 DV L P+Y AL Q + L G RK+V++TNIAETSLTI G Sbjct: 579 LYGKKYGINTFDKVDDVELFPIYSALPAEIQNRIFLDLDIGKRKIVVSTNIAETSLTISG 638 Query: 284 IRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE- 342 IR V+DC ++ ++P+ GL L +S A+ QR+GRAGR PGI+ L ++E Sbjct: 639 IRYVIDCGYSKLKVYNPKIGLDSLAIAPISIANANQRSGRAGRTAPGIAYRLYSEETELT 698 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EG 401 Q+ PEI +++LS +++ L G + +LD P + L+A+ L LG L + Sbjct: 699 DMYQQTIPEIKRTNLSNIVLTLKSLGIKNVVDFPFLDPPSIETLMASMYELWFLGVLNDD 758 Query: 402 ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSR 460 L+A G+KM P L+ +L+ + + + I A+L P + Sbjct: 759 GELNALGKKMVNFPLQPTLSKVLIQSISFGCSKEVVTIVAMLSVPQVFERPKERQKEADE 818 Query: 461 NQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ--------- 511 + + L +NV + F + R ++ R Q Sbjct: 819 ARKRFFISESDHLTLMNVYDQWKSAKYSPKWCKKNFVLYKSLIRAREIRTQIVSLLKQQK 878 Query: 512 ------------------------------------LANGMGAMLDANDALSR----HEW 531 L GM + +L + Sbjct: 879 HKLKSAGSDLSIIRKCICSGFAQQAAKASGLTKYVHLRTGMELRVHPTSSLYGLPNLPPY 938 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 +I +L I VD L L Sbjct: 939 VIYHEMLLTEQE---YICCVTSVDPLWLADYGSLLYDVQ 974 >UniRef50_A6DMD8 ATP-dependent helicase HrpB n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMD8_9BACT Length = 805 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 240/816 (29%), Positives = 393/816 (48%), Gaps = 58/816 (7%) Query: 23 VLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGY 82 +LLSAPTG+GKST +P LL + GKII+L+PRR AA+ +A A L +EK GD +GY Sbjct: 1 MLLSAPTGSGKSTCVPGILLDSGKMPGKIIVLQPRRAAAKFLAHHTARLRSEKLGDEIGY 60 Query: 83 RMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDV 142 +R + VG +T++ +T+G+ + ++ +P+L+G+ V+ DEFHER Q DLA A+ + Sbjct: 61 NIRHDSKVGAHTQIIFMTDGLFLQQLKNNPQLNGIAAVLFDEFHERRWQMDLAFAMCQKI 120 Query: 143 QQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAV 202 Q +D L L++MSATLD D+LQ+ L P++ ++ R FPV+ YL ++ + A Sbjct: 121 Q-SRQDKLHLMLMSATLDVDKLQKKL-NCPLITTDVRHFPVDINYLIPDRQKKIWEVAAK 178 Query: 203 ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAP 262 + ++ Q GSLL+F+PG EI + +L + + + L+G L+ +Q + I Sbjct: 179 SAKNLIAQTDGSLLIFMPGKYEITKTVNELKKVLKTP--IFALHGQLNPQEQDRIIENT- 235 Query: 263 QGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAG 322 G +K++++TNIAETSLTI I V+D R + +DP+ + L T+ VSQ+S QR+G Sbjct: 236 -GQQKIIVSTNIAETSLTIPNITAVIDSGLVRQSAYDPQRQINTLYTKSVSQSSAEQRSG 294 Query: 323 RAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPP 382 RAGR G L L +K + R EPEIL+ D S LL++ L G +D + + +D P Sbjct: 295 RAGRTSAGRCLRLWSKSEQSRKPEHFEPEILRCDPSELLLQCLAQGFNDLSDLELIDAPD 354 Query: 383 VVNLLAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAA 441 ++ A LL LG R LS G + + PRLAA+L D+ A AA Sbjct: 355 --DIEQAWGLLSNLGFTNAHRGLSTAGVHASKMPCSPRLAALLYYGTQADQMDKACTYAA 412 Query: 442 ILEEPPRMGNSDLGVAFSRNQPAWQQRSQQL----------------------------- 472 ++ E P + N + S L Sbjct: 413 LISEAPIILNRNKKKLLDLIPGKHVDFSSDLDLMAELLYSAKSLKFAPQECDKYGLNANN 472 Query: 473 -----LKRLN--------VRGGEADSSLIAPLLAGAFADRIARRRGQDG-RYQLANGMGA 518 L R+ R + + L AF D +A+RR + LAN Sbjct: 473 CRSVDLARMQFLRLCEKLPRLNDFNDMHPHCCLLRAFPDHLAKRRDTSSLQVTLANKQKG 532 Query: 519 MLDANDALSRHEWLIAPLLLQGSASPDARILLA--LLVDIDELVQRCPQLVQQSDTVEWD 576 +D + + + ++A + ++S A+ L+ + + L P +Q + + WD Sbjct: 533 EIDRLSSQKKADLILATSIADIASSLGAKTKLSQLTSISPELLDHTFPGELQSQERMVWD 592 Query: 577 DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLR 636 + +++ ++ L ++ + + + Q + I D + + W + E R Sbjct: 593 PSSKSVRQAKQHAFRSLIIEEKISICEANAQTEQVLAEKIIDGTIKLNKWNEKVELWITR 652 Query: 637 LLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQ 696 + A+ P+ D D+ L E + +G+ ++ +D L+ LL W Q Sbjct: 653 VRKCAELYPDKDLITYSDQDL----EIVYMEMCSGITKASEVRDMDCLVYLKNLLSWDEQ 708 Query: 697 QRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLS 756 +D P +P G ++ I Y +Q++F P I R+PL E+L+ Sbjct: 709 CFIDEATPESIQLPEGKKLRIIYESGKEIYARAFIQQLFDLKETPLIGPARIPLTFEILA 768 Query: 757 PAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVW 792 P RP+Q+T++L +FW G Y E++ + RY KH W Sbjct: 769 PNHRPIQVTKNLENFWSGLYPEIKPALSRRYHKHKW 804 >UniRef50_A0Z814 Helicase, ATP-dependent n=3 Tax=unclassified Gammaproteobacteria RepID=A0Z814_9GAMM Length = 1246 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 202/796 (25%), Positives = 336/796 (42%), Gaps = 83/796 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LPV E+ A+ V+++ TG+GK+T +P L G +I +PRRLAA Sbjct: 22 ELPVCERREEIREAISQHQVVIIAGETGSGKTTQIPKICLELGRGQEARIGHTQPRRLAA 81 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA+R+A+ L + G VGY++R + V P+T ++++T+G+L +QRD EL +I Sbjct: 82 RRVAERIADELESELGGLVGYKVRFNDSVAPSTAIKLMTDGILLAELQRDRELRDYDTLI 141 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L + R DLK++I SAT+D DR Q APV+ GR F Sbjct: 142 IDEAHERSLNIDFILGYLRALLPK-RPDLKVIITSATIDVDRFSQHFDNAPVIEVSGRLF 200 Query: 182 PVERRYLPLPA--HQRFDDAVAVATAEMLRQ---ESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE YL +D + A ++ + G +L+FLPG EI+ + +L Sbjct: 201 PVEVLYLGDSDGAEDGVEDQIVRAVDGIVAEDFGPRGDVLIFLPGEREIRDLSRRLKG-- 258 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS +Q + P GMR VVLATN+AETSLT+ GIR V+D RV+ Sbjct: 259 DERRQILPLYARLSAAEQNRVFKPTGSGMR-VVLATNVAETSLTVPGIRYVIDPGTARVS 317 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ RT L RL +R+SQ+S QR GR GR+ G+ L L +++ ++PEIL+++ Sbjct: 318 RYSHRTRLQRLPVERISQSSADQRKGRCGRVAAGVCLRLYSEQDFLARPQFTDPEILRTN 377 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALG 415 L+ +++++L+ G D + ++D P + +RLL+ LGA+ +L++ G+KMA L Sbjct: 378 LAAVVLKMLELGLGDVQKFPFVDPPEGKMVRDGQRLLEELGAISARGKLTSLGRKMARLP 437 Query: 416 NDPRLAAMLVSAKNDDEAAT-AAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLK 474 DP+LA M+ +A ++A+ + PR ++ + + L Sbjct: 438 VDPKLARMVHAAGELKCLEEVLVVVSALAVQDPRDRPAEKRAQADQAHARFNHPRSDFLS 497 Query: 475 RLNVRGGEADSSLI------APLLAGAFADRIARRRGQDGRYQLA--------------- 513 LN+ + L F + R ++ QL Sbjct: 498 WLNLWNYYEEQRQSLSQNQFRKLCQREFLSFMRLREWREVHSQLVIACRQVQLRPGAALN 557 Query: 514 --------------------------------NGMGAMLDANDALSR--HEWLIAPLLLQ 539 + L + +WL+A +++ Sbjct: 558 DETDFEGVHKALLSGLLGQVAQLDEGRKYNATRNRSVQIFPGSVLHKKPPKWLVAAEVVE 617 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQSD-TVEWDDAQGTLKAWRRLQIGQLTVK-- 596 S +D L++ PQ++++ W G + A R+ + LT+ Sbjct: 618 TSQ---VYARQCAAIDPKWLLRINPQILKRHHYEPAWQMRSGRVMAIERVTLYGLTISDG 674 Query: 597 -VQPLAKPSEDELHQAMLNGIRDKGLSVLN--WTAEAEQLRLRLLCAAKWLPEYDWPAVD 653 + + + + G + + D VD Sbjct: 675 QRIHFGEVNSVAAREIFIRDGLVLGDYRKPPAFLKANLHSIKEVQDLESRTRRRDLL-VD 733 Query: 654 DESLLAALETWLLPHMTGVHSLRGLKS--LDIYQALRGL---LDWGMQQRLDSELPAHYT 708 +++L + + SL D Q L + + + P+ Sbjct: 734 EQALFDFYDERIPAQCVSASSLEKWVKQLADDKQLRLDQSQILTRDPGEAIADQFPSELE 793 Query: 709 VPTGSRIAIRYHEDNP 724 + ++Y + Sbjct: 794 WRE-ATYRLKYRFEPG 808 >UniRef50_Q9H5Z1 Probable ATP-dependent RNA helicase DHX35 n=44 Tax=cellular organisms RepID=DHX35_HUMAN Length = 703 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 166/651 (25%), Positives = 277/651 (42%), Gaps = 76/651 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKI-ILLEPRRLAA 61 LPV + +L ++ V++ TG GKST +P L G++ + +PRR+AA Sbjct: 54 LPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAA 113 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGP-NTRLEVVTEGVLTRMIQRDPELSGVGLV 120 VA R+AE G VGY +R +C TR++ +T+G+L R + DP L+ ++ Sbjct: 114 VTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVI 173 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----------E 170 +LDE HER+L D+A+ LL +Q+ R DL+L++ SATLD D+ + Sbjct: 174 MLDEAHERTLYTDIAIGLLKKIQKK-RGDLRLIVASATLDADKFRDFFNQNETSDPARDT 232 Query: 171 APVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 ++ EGR+FPV+ YL P V + G +L FL G E++ V Sbjct: 233 CVILTVEGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDVLAFLTGQEEVETVVS 292 Query: 231 QLASR--------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 L + + + + P+Y L +Q K + +RKV++ATN+AETS+TI Sbjct: 293 MLIEQARALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITIS 352 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GI V+DC ++ ++PRT + L+ VSQAS QRAGR GR G L +E + Sbjct: 353 GIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRSRSGKCYRLYTEEAFD 412 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE 402 + + PE+ +S+L+ ++++L G + + ++ PP +++ A LL LG L+ + Sbjct: 413 KLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQSMVQALELLYALGGLDKD 472 Query: 403 -RLS-AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFS 459 RL+ G ++A +P A ML+ + N + IAA+++ + Sbjct: 473 CRLTEPLGMRIAEFPLNPMFAKMLLESGNFGCSQEILSIAAMMQIQNIFVVPPNQKSHAI 532 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL------- 512 R + L LN+ + + F + R R QL Sbjct: 533 RVHRKFAVEEGDHLTMLNIYEAFIKHNKDSKWCQEHFLNYKGLVRAATVREQLKKLLVKF 592 Query: 513 -----------------------ANGMGA---------------MLDANDAL---SRHEW 531 AN + L W Sbjct: 593 QVPRKSSEGDPDLVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRW 652 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTL 582 +I ++Q S + ++ L++ P QQ + + + Sbjct: 653 VIYNEVIQTSK---YYMRDVTAIESAWLLELAPHFYQQGTHLSLKAKRAKV 700 >UniRef50_Q11S69 ATP-dependent helicase n=2 Tax=Sphingobacteriales RepID=Q11S69_CYTH3 Length = 718 Score = 674 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 262/719 (36%), Positives = 400/719 (55%), Gaps = 28/719 (3%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLA 60 ++LPV ++P+++ +++ AP GAGKST LPL L + GK II+LEPRRLA Sbjct: 8 TTLPVQEIVPQVINHFQDNTTLIVKAPPGAGKSTLLPLTFLNESWLEGKKIIVLEPRRLA 67 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A+ +A R+++LL E+ G+TVGYR+R + + TR+EVVTEG+LTRM+Q D L V LV Sbjct: 68 AKTIATRMSQLLGEQAGETVGYRIRFETKISDKTRIEVVTEGILTRMLQTDNTLKDVALV 127 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I DEFHERS+ AD+ALAL + Q R+DL+LLIMSAT+D L L A ++ SEGR Sbjct: 128 IFDEFHERSIHADVALALCREAQLTKRNDLRLLIMSATMDLPELSAKLK-AKIIESEGRQ 186 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV 240 +PVE Y + + A ++ + G +L+FLPG EI ++ L +++ S+ Sbjct: 187 YPVEIHYTGVTDMHLLPELTARVVSKASKDNKGDILVFLPGQAEINACRDLLDNKL-SNT 245 Query: 241 LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP 300 ++ LYG L Q+ A+LP G RKVVLAT+IAETSLTIEG+ VVD + ++FDP Sbjct: 246 VVHTLYGQLPFAQQQAALLPDQTGKRKVVLATSIAETSLTIEGVTTVVDSGFGKRSKFDP 305 Query: 301 RTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGL 360 ++GL+RL T +S + QRAGRAGRL G + +K Q E +PEI +DLS L Sbjct: 306 QSGLSRLETVNISVDAADQRAGRAGRLSAGTCYRMWSKAQHETLQKHHQPEIEITDLSSL 365 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRL 420 ++E+ WG S+ M WL PP ++ AK L + AL+ +++A G+K+ L +PR+ Sbjct: 366 VLEMAVWGISNIYNMVWLTPPPQSHVKQAKETLHYIDALDRNKVTAHGKKIHQLPCNPRI 425 Query: 421 AAMLVSAKNDDEAATAAKIAAILEEPPRMG----NSDLGVAFSRNQPAWQQ--------- 467 A ML+ A+ ++ A A IAAI+EE + D+ + + Sbjct: 426 AHMLLMAEKLEQEALATDIAAIIEEKDPLTIKEAGVDINERIKALRRFRRNDGKGRAFGL 485 Query: 468 -----RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR-GQDGRYQLANGMGAMLD 521 RS + L + V DS + LLA A+ +R+A R G ++QLANG A Sbjct: 486 IERVARSYRDLMEIEVENEGFDSFMTGLLLAHAYPERVAFARPGNQSQFQLANGTYAQFS 545 Query: 522 ANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 D+LSR W+ + + +I +A ++ +L +V+ + +V WD Sbjct: 546 HKDSLSRESWVSVSHID--AREGTGKIFMASPLNPKDLK----GMVKTAVSVHWDLISND 599 Query: 582 LKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAA 641 L L+IG++ +K P+ P+++E +A+ + ++ G +L++T E EQ + + A Sbjct: 600 LIVHTELRIGKIVLKSFPMDDPTDEERSRALCDVVKKDGRELLHFTPEFEQWQAAMFRAQ 659 Query: 642 KWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLD 700 + P +P VD ESLL + WL P + LK LD+ Q + + + + +D Sbjct: 660 QQHPLAQFPDVDTESLLLTCDDWLTPFADEIEEKDDLKKLDLLQIISARIPKELLKLVD 718 >UniRef50_Q6CF95 YALI0B09053p n=1 Tax=Yarrowia lipolytica RepID=Q6CF95_YARLI Length = 1077 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 162/641 (25%), Positives = 267/641 (41%), Gaps = 68/641 (10%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP AV LL + ++ TG+GK+T L L G I +PRR+AA Sbjct: 402 LPAFAVRDPLLQVIQSNQVTIVIGETGSGKTTQLTQYLYEAGYAERGMIGCTQPRRVAAM 461 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VAQR+++ + + G VGY +R ++ P T+++ +T+G+L R DP L VI+ Sbjct: 462 SVAQRVSQEMEVRVGQEVGYAIRFEDHTSPATKIKYLTDGILLRETLTDPTLDNYSCVIM 521 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER+L D+ L L + R DLKL++ SAT+++ R AP GR++P Sbjct: 522 DEAHERALNTDILLGLFRTILAKRR-DLKLIVTSATMNSKRFSDFFGGAPTFTIPGRTYP 580 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQEQLASRIGSD- 239 V + P AV + + E +G +L+F+ G +I E L R+ D Sbjct: 581 VSVHHERAPVDDYVAAAVKKVLSIHVSSEVSTGDILVFMTGQEDITVTCEVLEERLQKDL 640 Query: 240 -----VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 +++ P++ + + Q K AP G+RK ++ATNIAETSLT++GI VVD + Sbjct: 641 DNPAPLMILPIFSQMPADLQNKIFNKAPPGVRKCIVATNIAETSLTVDGITFVVDAGYSK 700 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEIL 353 + + P+TG+ L +S A QR+GRAGR G + L + E + PEI Sbjct: 701 LKVYSPKTGMDSLQVAPISVAQAVQRSGRAGRTAKGTAYRLYTEHAEREEMYPTAIPEIQ 760 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 +++L+ L+ L G +D + +++D PP ++A+ L LGA++ ++ G KM+ Sbjct: 761 RTNLANTLLLLKSVGVTDLMKFAFMDPPPKDTIMASLYELWSLGAVDNLGNITQLGMKMS 820 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQ 471 DP L +L+ + + + + A+L P + + + Sbjct: 821 QFPMDPCLGKILIKSVDYGCSKEMLSVVAMLCVPTVFYRPPERQQEADSAREKFFVPESD 880 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGM--------------- 516 L L+V + A F A + + R QL M Sbjct: 881 HLTLLHVYTQWLHNKKSPVWCAKHFLHAKALEKAHEVREQLEQIMTTNKMHIDSCGTDWD 940 Query: 517 ------------------------------GAMLDANDALSR----HEWLIAPLLLQGSA 542 L AL +++ L+ S Sbjct: 941 LLRKCICAGFFHQAARVHGLGSYRNLRTLVSTQLHPTSALYGLGYLPAFVVYHELILTSK 1000 Query: 543 SPDARILLALLVDIDELVQRCPQLVQQSDT---VEWDDAQG 580 + VD L + D V++ + Sbjct: 1001 E---YMSCVTSVDPAWLAEFGSCFYVLKDRTGKVDFSRKRA 1038 >UniRef50_A9US44 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9US44_MONBE Length = 1322 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 164/696 (23%), Positives = 284/696 (40%), Gaps = 87/696 (12%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAAR 62 LP+ AV ELL + +++ TG+GK+T + L G G I +PRR+AA Sbjct: 610 LPIYAVRQELLNIIRDNQVIIIVGQTGSGKTTQMTQYLYEAGYGDFGTIGCTQPRRVAAM 669 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + + G VGY +R ++ T ++ +T+G+L R + +L +I+ Sbjct: 670 SVAKRVSEEMGVELGKQVGYSIRFEDVTSRETVIKYMTDGILLRESLNEGDLDQYSAIIM 729 Query: 123 DEFHERSLQADLALALLLDVQQG--------------------LRDDLKLLIMSATLDND 162 DE HERSL D+ LL DV R DLKL++ SAT+D+ Sbjct: 730 DEAHERSLNTDVLFGLLRDVVARCGTAAPRCVRPSHSRVPRCIRRRDLKLIVTSATMDST 789 Query: 163 RLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGV 222 + PV GR+FPVE + P + A+ A L+ G +L+F+ G Sbjct: 790 KFATFFGNVPVFNIPGRTFPVEVFFAKNPVDDYVEAAIKQAVQIHLQPHPGDMLIFMTGQ 849 Query: 223 GEIQRVQEQLASRIG------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE 276 +I+ LA R+ + + P+Y L + Q K + +RK ++ATNIAE Sbjct: 850 ADIEATCSVLAERLEALGEDVPPLSILPIYSQLPSDLQAKIFKKS--DVRKCIVATNIAE 907 Query: 277 TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLI 336 TSLT++GI V+D ++ ++P+ G+ L +SQA+ QR+GRAGR PG + L Sbjct: 908 TSLTVDGIMHVIDSGFCKLKCYNPKIGIDDLQIYPISQANANQRSGRAGRTGPGNAYRLY 967 Query: 337 AKEQAER-AAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQM 395 + + + PEI +++L+ +++ L G + ++D PP +L + L + Sbjct: 968 TEAIYKNELLPLTVPEIQRTNLANVVLLLKSLGVENLMDFHFMDPPPQETILNSMYNLWI 1027 Query: 396 LGALEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSD 453 LGAL+ L+ G++M DP + ML+ + + + ++ I ++L Sbjct: 1028 LGALDNTGALTPLGRQMVEFPLDPAQSKMLIVSADLECSSEILTIVSMLSVDKHFFRPPG 1087 Query: 454 LGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL- 512 + + L LN ++ + + F + R+ ++ R QL Sbjct: 1088 REEESDLKREKFAVPESDHLTLLNTYQQWKSNNYSSSWASEHFIHAKSMRKVREIRMQLM 1147 Query: 513 --------------------------------------------ANGMGAMLDANDALSR 528 GM A L +L Sbjct: 1148 DIMKSQKVPVISSGTSWDAVRKCICSAYFHHAARLKGIGEYVNARTGMPAHLHPTSSLYG 1207 Query: 529 ----HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKA 584 +W+ L+ + + VD L + D+ E + Sbjct: 1208 MGINPDWVCYHDLVMTTKEYMQFV---TAVDPLWLAELGNIFFSVKDSAEARLRRKKEND 1264 Query: 585 WRRLQIGQLT---VKVQPLAKPSEDELHQAMLNGIR 617 + Q + S ++ +A+ IR Sbjct: 1265 QESKHMEQEMTEALNAMRARDASREQERKALSRSIR 1300 >UniRef50_A5E397 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E397_LODEL Length = 1015 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 149/527 (28%), Positives = 249/527 (47%), Gaps = 15/527 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 SLP+ + +L+ + +++ TG+GK+T + + + I +PRR+AA Sbjct: 427 SLPIYKMKRDLINQIRDNQFLVIVGETGSGKTTQIVQYIYEVGLNQSKIIGCTQPRRVAA 486 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA+R+AE ++ G VGY +R + NT+++ +T+G+L R DP LS +++ Sbjct: 487 TSVARRVAEEMDVHLGGLVGYNVRFDDKTSTNTKIKYLTDGMLLREALTDPSLSKYSVIM 546 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ LL + +LK+++ SATLD+++ + PV+ GR+F Sbjct: 547 LDEAHERTIATDVLFGLLKKAAKA-NPNLKVIVTSATLDSNKFSKFFNSCPVINIPGRTF 605 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PV+ Y P A+ + + +G +L+FL G EI+ E L R+ Sbjct: 606 PVDIVYTNKPEMDYLAAAIDSVCQIHISEPAGDILVFLTGQEEIEVASEILQERMKMLQP 665 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 +++ P Y +L ++Q + P GMRKVVLATNIAETSLTI+GI+ VVD ++ Sbjct: 666 NDPLMIILPCYSSLPSDEQLRIFEETPAGMRKVVLATNIAETSLTIDGIKYVVDSGYCKL 725 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 D GL L +SQA +QR+GRAGR PG L + + A S PEI + Sbjct: 726 NLQDVTLGLDMLKICPISQAQASQRSGRAGRTGPGKCYRLYTESIYSKLAPSSTPEIRRR 785 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAAL 414 +L+ ++ L S W+D P + + AA + L+ L AL+ + ++ G ++ + Sbjct: 786 NLASSVLMLKAMHLS---TFEWMDPPSMQAVNAAYKQLKQLKALDEKLEITKLGVDLSKI 842 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLL 473 +P LA ++ ++ I A+L + W + Sbjct: 843 PTEPSLAKCILLSEEMGCTMEMLAIVAMLSIQNVFHRPKAQRKLADQVIARWTHSISDHI 902 Query: 474 KRLNVRGGE--ADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGA 518 L V +S+ F + R+ Q QL + Sbjct: 903 TLLRVYTEFVKVESARKLDWCKRNFVQHSSLRKAQQIVEQLRSICRF 949 >UniRef50_B3L2J4 Atp-dependant rna helicase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L2J4_PLAKH Length = 857 Score = 673 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 169/648 (26%), Positives = 280/648 (43%), Gaps = 75/648 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAAR 62 LP + L +++ TG+GK+T + +L K I + +PRR+AA Sbjct: 206 LPAWSAKKNFLKLFKKNDVLIIVGDTGSGKTTQISQFVLESKFAEKKSIAVTQPRRVAAM 265 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R++E L+ + G VGY +R ++ T ++ +T+G+L R DP L +IL Sbjct: 266 SVAARVSEELDVELGTYVGYTIRFEDRSSTKTVIKYLTDGMLLRESMYDPLLKRYNTIIL 325 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER+L D+ ++ ++Q+ R+DLKL++MSATLD + Q+ + ++ GR +P Sbjct: 326 DEAHERTLATDILFGVIKNIQEQ-RNDLKLIVMSATLDAGKFQKFFNGSQILNIPGRLYP 384 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD--- 239 VE Y + + +E G +L+FL G EI+ ++++ + + Sbjct: 385 VEIFYTLQAEKDYIRVVIRTVYDIHVNEEEGDILVFLTGEEEIEMTKKEIEKLVSKNENA 444 Query: 240 --VLLCPLYGALSLNDQRKAILPAPQGM-------RKVVLATNIAETSLTIEGIRLVVDC 290 +++ PLY +L Q+K PAP+ RK +L+TNIAETSLTIEGI V+D Sbjct: 445 GQLVVLPLYSSLPSTQQQKIFEPAPKPRFKGDKMGRKCILSTNIAETSLTIEGIVYVIDP 504 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSE 349 + ++PR + L+ +S+AS QRAGRAGR +PG L ++ E+ Q+ Sbjct: 505 GFSKQKVYNPRARVESLLIAPISKASAQQRAGRAGRTKPGKCFRLYTEKCFEQTLPEQTY 564 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQG 408 PEIL+S+L +++ L + G D ++D P L+ A L LGAL+ L+ +G Sbjct: 565 PEILRSNLGSVVLNLKKLGIDDLVHFDFMDPPAPETLMRALEQLNYLGALDDEGELTQKG 624 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQ 467 M+ DP+LA +L+ + N ++ IAA+L P + G + + Sbjct: 625 HFMSEFPVDPQLAKVLIESPNYCCSSEILTIAAMLSVPYCFLRPKVKGKEADEMKTRFSH 684 Query: 468 RSQQLLKRLNVRGGE-----ADSSLIAPLLAGAFADRIARRRGQDGRYQL---------- 512 L +NV D + F + A Q+ R QL Sbjct: 685 LDGDHLTLMNVFHAFVNYSRMDINASKKFCYDYFLNHRAMTSAQNVRNQLIRTMEKMELK 744 Query: 513 ------------ANGMGA---------------------------MLDANDALS-RHEWL 532 N A L + EW+ Sbjct: 745 IVSMNPSHPDYYVNIRKALLSGFYQQVAYKTSKGYYITVKDIQIVTLHPSTVFQINPEWV 804 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQG 580 + L+ + + I +D L++ D + Sbjct: 805 MYHELILTTKN---FIRTVSRIDGKWLLEIARSYYDLDDLPNSEAKNE 849 >UniRef50_B9ZMZ4 ATP-dependent helicase HrpA n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMZ4_9GAMM Length = 1307 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 201/806 (24%), Positives = 344/806 (42%), Gaps = 92/806 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 LP+ A ++ A+ P ++L TG+GK+T LP L G G I +PRR+AA Sbjct: 77 DLPIHAERERIVAAIREHPVLVLCGETGSGKTTQLPKLCLEAGRGETGLIGHTQPRRIAA 136 Query: 62 RNVAQRLAELLNEKPG----DTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+VA R+AE L G TVG+++R + GPN ++++T+G+L + DPEL Sbjct: 137 RSVASRIAEELGTTLGGDRNSTVGFKVRFSDQTGPNNWVKLMTDGMLLAELAHDPELRAY 196 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 +I+DE HERSL D + +L R +L+++I SATLD +RL +AP++ Sbjct: 197 DTLIVDEAHERSLNIDFLMGVLKR-LSKKRPELRIIITSATLDPERLSAFFDDAPILTVA 255 Query: 178 GRSFPVERRYLPLPAHQRFDD------------AVAVATAEMLRQESGSLLLFLPGVGEI 225 GR++PVE RY P+ +D + A AE R G +L+FLPG EI Sbjct: 256 GRTYPVELRYRPIEPEDADEDNSTERGERDLFDGIRDAVAECERAGPGDILVFLPGEREI 315 Query: 226 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 + + L ++ +D + LY LS +Q + R++VLATN+AET+LT+ GIR Sbjct: 316 RDAHKALRGQVRADTEVLALYARLSAREQARVFQS--HSGRRIVLATNVAETALTVPGIR 373 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 V+D R++R+ R+ + RL + +SQA+ QRAGR GRL PGI + L +++ Sbjct: 374 FVIDSGLARISRYSWRSRVQRLSLEPISQAACDQRAGRCGRLGPGICIRLFSEDDYNLRP 433 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERL 404 ++PEI +S+L+ +++++ P Q ++D P + RLL+ LGA++ R Sbjct: 434 PFTDPEIQRSNLASVILQMAALKLGQPRQFPFVDPPDPRLVKDGYRLLEELGAVDTRGRT 493 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQP 463 + +G+++A + DPR AML++ + A IAA L + PR ++ A + Sbjct: 494 TPRGRQLARMPIDPRHGAMLLAGADHGCVTETATIAAFLSLQDPRERPAEATQAADQAHR 553 Query: 464 AWQQRSQQLLKRLNVRGGEA------DSSLIAPLLAGAFADRIARRRGQDGR-------- 509 +Q + L + S+ + F + + R Q+ R Sbjct: 554 EFQVEGSDFMGMLRLWEAWHTAREDLGSNALKRWCREHFLNFLRMREWQELRVQLLRLAR 613 Query: 510 ------------------------------------YQLANGMGAMLDANDALS--RHEW 531 Y A + L+ + W Sbjct: 614 EMDLKPNHQPADAEPVHRALLTGLVSQIGQKTERGDYLGARNRRFQIHPGSVLAKKKPAW 673 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQI 590 +++ + + + ++ D ++ P L++ + G + A+ R+ + Sbjct: 674 VMSAEIAETTR---VYARDNARIEPDWILAAAPHLLKHHIFEPHFQRRSGRVGAFDRITL 730 Query: 591 GQLTVKVQP---LAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEY 647 L V + AK E + ++ G + + R + A+ Sbjct: 731 YGLVVAPKKPVDFAKHDPSEARRILIREGLVGGELRTR-SKGVQANREAVAEIAEQEARG 789 Query: 648 DWPA--VDDESLLAALETWLLPHMTGVHSLRGLKSL------DIYQALRGLLDWGMQQRL 699 V+++ L + L +T S D + R L L Sbjct: 790 RRRDLLVEEDRLFDFYDARLPADITDGTSFETWARKAEKQDPDALRIDRAELLNEPDATL 849 Query: 700 DS-ELPAHYTVPTGSRIAIRYHEDNP 724 P H + G R+ + Y + Sbjct: 850 PQGAYPDHLEL-EGLRLPLAYRFEPG 874 >UniRef50_B0ECA9 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative n=2 Tax=Entamoeba RepID=B0ECA9_ENTDI Length = 845 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 155/626 (24%), Positives = 286/626 (45%), Gaps = 65/626 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 LP+ E++ ++ ++ TG+GK+T + L+ G NGKI +PRR+AA Sbjct: 225 ELPIFFKKKEIIRSIKENQINIIIGETGSGKTTQIAQYLMEEGIGKNGKIGCTQPRRVAA 284 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VAQR++E + K G+ VGY +R ++ T+++ +T+G+L R + +DP L ++I Sbjct: 285 VSVAQRVSEEVGSKLGEEVGYLIRFEDKTSKKTKIKFMTDGILLREVIKDPMLEEYSVII 344 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ ++ + Q R+DLKL+I +AT++ ++L + P++ EGR+F Sbjct: 345 MDEVHERSLNTDILFGIIKRIIQE-RNDLKLIITTATINENKLIEFFGIIPIIHIEGRTF 403 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL-------AS 234 PV YL + A+ + + QE G +L+F+ G +I+ E L Sbjct: 404 PVSVEYLKTTPKDYIEMAIKQILSIHMNQEKGDILVFMTGQEDIEVSCELLKEKYKEIKE 463 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294 ++ + P+Y LS Q+K + + RKV+++TNIAETSLT++GI+ V+D + Sbjct: 464 EKKQEIEIIPIYSQLSNEAQKKIFIKS--NKRKVIISTNIAETSLTVKGIKYVIDSGLGK 521 Query: 295 VARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEPEIL 353 ++P+ G+ L S+ + QR GRAGR E GI L + + PEI Sbjct: 522 WKIYNPKIGMETLQIFPESKQNAEQRKGRAGRTETGICYRLFTENTFKYELLESPIPEIQ 581 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMA 412 +S+L+ +++EL G +D ++ +D+P +L + L +LGAL+ ++ G++M Sbjct: 582 RSNLNNVILELKAIGINDINKIELIDKPNEERILNSMYELWILGALDEIGNITKLGKEMV 641 Query: 413 ALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQ 471 L +P L+ M++ ++ + I A+L P + ++ + Q Sbjct: 642 ELPLEPSLSKMVIISQKFECIKEVLTIVAMLTVPNIFIRPKEREKEADISREKFYQPDSD 701 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ-------------------- 511 + +NV + + + A + +D R Q Sbjct: 702 HITLINVYNQWKEHEENEQWCNKNYINSKAMNKAKDIRNQLKDLINKKGINEISCGRNLD 761 Query: 512 ------------------------LANGMGAMLDANDAL----SRHEWLIAPLLLQGSAS 543 L G+ ++ AL + +++I LL + Sbjct: 762 KLKKCITASYFYNAAKLKGKNYINLRTGVQCLIHPTSALFNMGFKSKYVIYHELLLTTK- 820 Query: 544 PDARILLALLVDIDELVQRCPQLVQQ 569 + + ++ L + + Sbjct: 821 --SYMRCITSIEGKWLPELGEIFFKT 844 >UniRef50_A7AVM7 DEAH box RNA helicase, putative n=3 Tax=Piroplasmida RepID=A7AVM7_BABBO Length = 1016 Score = 671 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 151/633 (23%), Positives = 266/633 (42%), Gaps = 74/633 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 LPV ELL+ + +++ TG+GK+T L L G I +PRR+AA Sbjct: 328 QLPVFKCRDELLSYIGQFQVMVVVGETGSGKTTQLAQFLYESGYYKRGVIGCTQPRRVAA 387 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +V QR+A + + GD VGY +R ++ NT ++ +T+G+L R DP+L +I Sbjct: 388 VSVCQRVAAEMGSRVGDLVGYSIRFEDLTSRNTAVKFMTDGILLRETLMDPDLDRYSCII 447 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D+ +L V R D+++++ SAT+D D+ + P+ GR+F Sbjct: 448 MDEAHERSLNTDVLFGILKSVVARRR-DIRVIVTSATMDADKFARFFGNCPIYKIPGRTF 506 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA-------- 233 PV Y+ + + AV + + + G +L+F+ G +I E L Sbjct: 507 PVRIEYMRSMGNDYVESAVDKCVSLHISEGPGDVLIFMTGQDDINATCELLDLKLYKVMQ 566 Query: 234 ---SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + P+Y L Q++ P RKV+++TNIAETSLT++GI+ V+D Sbjct: 567 STTRADLQPFCVLPIYSQLPSELQQRVFKKYP--YRKVIVSTNIAETSLTLDGIKFVIDS 624 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSE 349 ++ ++P+ G+ L VSQA QR+GRAGR PGI L + + Sbjct: 625 GFCKLKVYNPKVGMDSLQITPVSQAGANQRSGRAGRTAPGICYRLYTERTYLNDLFENNV 684 Query: 350 PEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQG 408 PEI++++L +++ L + ++D P N+L+A L +LG ++ L+ G Sbjct: 685 PEIMRTNLCNVVLLLKSLKVKRLTEFDFIDPPHAENILSAMLQLWILGGIDEFGELTDIG 744 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-----GNSDLGVAFSRNQP 463 +K+ +P L+ M+++ +++ + + +++ P ++ A + + Sbjct: 745 RKLVHYPLEPPLSKMMIAGESERCMSEILTVVSVMSAPNVFVVENETDAQRESADNATRE 804 Query: 464 AWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL----------- 512 + L LNV + + RR + R QL Sbjct: 805 KFMVPESDHLTLLNVYKQWCANGRSDSWCLQYRLQPKSLRRAAEVRQQLLDIVTKQGIEE 864 Query: 513 -ANGMG---------------------------------AMLDANDALSR----HEWLIA 534 + G L AL ++++ Sbjct: 865 TSCGTNWDQVRRAICSGYFHNASKLKGLGEYSNLRSFAPCFLHPTSALYGMGYTPDYVVY 924 Query: 535 PLLLQGSASPDARILLALLVDIDELVQRCPQLV 567 ++ S + VD + L + P Sbjct: 925 HEVVITSKE---YMRHVTAVDAEWLYELGPNFF 954 >UniRef50_B2JJC7 ATP-dependent helicase HrpA n=89 Tax=cellular organisms RepID=B2JJC7_BURP8 Length = 1462 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 201/845 (23%), Positives = 342/845 (40%), Gaps = 124/845 (14%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKII-----LLEPR 57 +LPV+ E+ A++ V++S TG+GK+T LP LA G +PR Sbjct: 159 ALPVSGRREEIARAIEGHQVVIVSGETGSGKTTQLPKICLALGRGLGAGGGGLIGHTQPR 218 Query: 58 RLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGV 117 R+AA +R+AE L G+ VGY++R + + P ++++T+G+L Q DP L Sbjct: 219 RIAASATGRRIAEELGTPFGEVVGYKVRFTDNLSPGASVKLMTDGILLAETQTDPLLKAY 278 Query: 118 GLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----EAPV 173 +I+DE HERSL D L L ++ R DLKL++ SAT+D DR + APV Sbjct: 279 DTLIIDEAHERSLNIDFLLGYLKEILPK-RPDLKLIVTSATIDADRFARHFGSEEKPAPV 337 Query: 174 VISEGRSFPVERRYLPLPAH---------------------------QRFDDAVAVATAE 206 + GR +PVE RY P+ + DA+ A E Sbjct: 338 IEVSGRLYPVEVRYRPVADDSPAVKAAEGNSGREHRPDRPKTQRETDRDLMDAIVEAADE 397 Query: 207 MLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMR 266 + R+ G +L+FLPG EI+ E L + PL+ LS +Q + P R Sbjct: 398 LCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAAEQERVFR--PSNAR 455 Query: 267 KVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGR 326 ++VLATN+AETSLT+ GIR V+D RV R+ R + +L + +SQA+ QRAGR GR Sbjct: 456 RIVLATNVAETSLTVPGIRYVIDTGLARVKRYSYRNKVEQLQVEAISQAAANQRAGRCGR 515 Query: 327 LEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNL 386 + GI + L + + ++PEIL+S L+ +++ + + +++ PP + Sbjct: 516 VADGICIRLYEEADFQARVRFTDPEILRSSLAAVILRMKSLHLTAIETFPFIEPPPGRAI 575 Query: 387 LAAKRLLQMLGALEGER-LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE- 444 +LL LGA++ + L+ G+++A L DPR+ M+++A++ IA+ L Sbjct: 576 ADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQLALREVLIIASALSV 635 Query: 445 EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVR-------GGEADSSLIAPLLAGAFA 497 + PR D + + + L+ L + + + + F Sbjct: 636 QDPRDRPIDAQEQADQAHRKFADERSEFLQWLKIWTWFEEAVAHKKSNRQLTDACRQNFL 695 Query: 498 DRIARRRGQDGR---------------------------------------------YQL 512 + R +D Y Sbjct: 696 SHLRLREWRDVHSQLLTVVREHGWRLNESEATFEQIHLALLTGLLGNIGLKADDEPYYLG 755 Query: 513 ANGMGAMLDANDALSRH--EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 A G+ L AL + +W++A L++ S ++ + + + L+++S Sbjct: 756 ARGIKFYLWPGSALVKKAGKWVMAAELIETSRL---YARCIAKIEPEWVERVGAHLLKKS 812 Query: 571 -DTVEWDDAQGTLKAWRRLQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDKG--LSVL 624 W+ + A+ R + L V + K + + G +G + L Sbjct: 813 LSEPHWEKRAAQVTAFERAMLYGLPVYHRRRVSFGKQDPARARELFIRGALVEGEFDTKL 872 Query: 625 NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIY 684 + A +L + D VDDE + A + + + + ++ Sbjct: 873 AFFAHNRKLLADIEQLEHKSRRQDVL-VDDELIYAFYDQAIPNGIHTGAAFERWYRDEVK 931 Query: 685 -------QALRGLLDWGMQQRLD------SELPAHYTVPTGSRIAIRYHEDN-----PPA 726 + L R + P T+ G +A+ YH + Sbjct: 932 KSGQQEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRMTMA-GVDMALTYHFEPGSPRDGVT 990 Query: 727 LAVRM 731 LAV + Sbjct: 991 LAVPL 995 >UniRef50_A6C1G8 ATP-dependent helicase HrpA n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C1G8_9PLAN Length = 1334 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 200/818 (24%), Positives = 341/818 (41%), Gaps = 104/818 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 SLP+ L + ++ V++ TG+GKST LP LL+ GI+G I +PRR+AA Sbjct: 92 SLPIHQELATIQKTIEENQVVIVCGETGSGKSTQLPKLLLSMGRGISGIIGHTQPRRIAA 151 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA R++E L + G G+++R + PNT ++++T+G+L Q D L+ +I Sbjct: 152 RSVAARISEELGREQGTACGFKIRFTDTTNPNTYIKLMTDGILLAETQTDSFLNQYDTII 211 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVISE 177 +DE HERSL D L L + R DL+++I SAT+D +R + AP++ Sbjct: 212 IDEAHERSLNIDFLLGFLKRLLPKRR-DLRVIITSATIDAERFSEHFAGSEGPAPILNVS 270 Query: 178 GRSFPVERRYLPLPAHQRFDDA------------------VAVATAEMLRQESGSLLLFL 219 GR++PVE RY P +A +A A E+ + G +L+F+ Sbjct: 271 GRTYPVEIRYRPFDDEPAGKEAGKETGNKSQNSSRDEQSQLADAVNELAAIDDGDILIFV 330 Query: 220 PGVGEIQRVQEQLASR------IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATN 273 +I+ + L R G + PLYG LS +Q K P R++V+ATN Sbjct: 331 ATEWDIRETAKLLRGRSIIGDDGGRQTEIVPLYGRLSTAEQNKVFR--PSSYRRIVIATN 388 Query: 274 IAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISL 333 +AE+S+T+ GIR V+D R++R+ R+ + RL + VSQAS QRAGR GR+ PGI + Sbjct: 389 VAESSITVPGIRYVIDTGLARISRYSSRSQVQRLPIEAVSQASANQRAGRCGRVAPGICI 448 Query: 334 HLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLL 393 L ++ + + PEIL+++L+ ++++ L + ++D P + L Sbjct: 449 RLYSEADYKSRDEFTSPEILRTNLASVILQTLNMRLGAIEEFPFIDPPKPTAIRDGYSTL 508 Query: 394 QMLGALEGE-RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGN 451 LGA++ + RL+ G+K++ L DPR+A M+++A +++ IAA LE + PR Sbjct: 509 FELGAIDEQNRLTDIGRKISRLPVDPRIARMILAAHDENCLHEILIIAAALELQDPRERP 568 Query: 452 SDLGVAFSRNQPAWQQRSQQLLKRLNVR------GGEADSSLIAPLLAGAFADRIARRRG 505 + A ++ L L + E S + F R Sbjct: 569 IEKQQAADEAHEQFRDPDSDFLSFLKLWDFYHKLKEEQSHSKLRRACVQNFLSYNRLREW 628 Query: 506 QDGRYQL--------------------------------------------ANGMGAMLD 521 D QL A L Sbjct: 629 ADIFRQLRQLVEESGIKPHPRKDDSAAIHRALLPGLLSNIAMRSDSHEYTGAGQQKYFLW 688 Query: 522 ANDAL--SRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDA 578 + + +W+I+ L++ S + + + P LV++S W+ Sbjct: 689 PGSGIFEKKPKWIISAELIETSKR---YARTVAKISPNWIEPAAPHLVKKSWSDPRWNGE 745 Query: 579 QGTLKAWRRLQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDKGLSVLN--WTAEAEQL 633 + A ++ + LT+ + K + +L +G +N + A ++ Sbjct: 746 AASAVAAEKVTLFGLTIVPRRSVHYGKIDPEHSRTLLLQYGLVEGDININVDFLAHNQKF 805 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRG------LKSLDIYQAL 687 L YD E A + + + SL+ LK+ + Sbjct: 806 IEDLEQQQARSRRYDLIP-SQEQQFAYYDQRIPEDVYDGVSLKKWWKVASLKTPTLLNMR 864 Query: 688 RGLLDWGMQQRLDS-ELPAHYTVPTGSRIAIRYHEDNP 724 + +D E P + + + YH + Sbjct: 865 LEDFFDTQSEEIDEGEFPDAINM-GKMQFPLEYHLEPG 901 >UniRef50_C7ME24 ATP-dependent helicase HrpA n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7ME24_BRAFD Length = 1297 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 203/834 (24%), Positives = 339/834 (40%), Gaps = 119/834 (14%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 LPV+ ++ A+ V+++ TG+GK+T +P LL G I +PRR+A Sbjct: 25 DLPVSQRREDIQAAITEHQVVVIAGATGSGKTTQIPKMLLELGYGQGGKLIGHTQPRRIA 84 Query: 61 ARNVAQRLAELLNEKPGD-TVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AR+VAQR+A + EK G+ TVGY++R TRL+++T+G+L I RD L Sbjct: 85 ARSVAQRIAGEMGEKLGEGTVGYQVRFTRETSRGTRLKLMTDGILLAEIGRDRLLKRYDA 144 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE--------- 170 +I+DE HERSL D+ L L + R DLK++I SAT+D +R + + Sbjct: 145 IIIDEAHERSLNIDVILGYLRQILPQ-RPDLKIIITSATIDPERFAEHFAKVLPSGERRP 203 Query: 171 APVVISEGRSFPVERRYLP----------------LPAHQRFDDAVAVATAEMLRQESGS 214 AP++ GR++PVE RY P + A+ A E+ + G Sbjct: 204 APIIEVSGRTYPVEIRYRPLVLEPEMEDDDELEDVHSIERDLTQAIIDAVDELSAEGPGD 263 Query: 215 LLLFLPGVGEIQRVQEQLASRIGS--------DVLLCPLYGALSLNDQRKAILPAPQGM- 265 +L+FLPG EI+ + E L + + V + PL+G LS DQ+K P G Sbjct: 264 MLVFLPGEREIREISEALTTHLSRGTRGRGALPVEVLPLFGRLSAQDQQKIFSPPKAGTY 323 Query: 266 RKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAG 325 R+V+L+TN+AETSLT+ GI V+D R++R+ RT + RL + +SQAS QR+GR+G Sbjct: 324 RRVILSTNVAETSLTVPGITYVIDSGLARISRYSQRTKVQRLPIEPISQASADQRSGRSG 383 Query: 326 RLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVN 385 R PGI++ L ++E E +EPEIL++ L+ +++ + G D +++ P Sbjct: 384 RTAPGIAIRLYSQEDFEGRPEFTEPEILRTSLASVVLLMTSLGLGDVEAFPFVEPPANRA 443 Query: 386 LLAAKRLLQMLGALEG-------ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAK 438 + RLL LGA+E RL+ G+ +A DPR+A ML+ A Sbjct: 444 ITDGVRLLDELGAIEDAPGEPGGRRLTRIGRSLARFPLDPRMARMLIEADRLGALREVLV 503 Query: 439 IAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG----------------- 480 I A L + PR ++ + L LN+ Sbjct: 504 IVAGLSIQDPRERPLGQEQQAKEKHKRFEDETSDFLAFLNLWNHLRQRRKELSSSAFRRE 563 Query: 481 ------------GEAD----------------------SSLIAPLLAGAFADRIARRRGQ 506 D I L + + Sbjct: 564 VRAEHLHYLRIREWWDLHAQLRDMAKDAGLSRNDNDASPQAIHQSLLAGLLSHVGLLDDR 623 Query: 507 DGRYQLANGMGAMLDANDALS--RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 Y A G L AL+ R ++++ L++ S A +D + Sbjct: 624 TREYAGARGARFALWPGSALAKKRPDYVMVAELVETSRLWG---RTAARIDPAWAEETGA 680 Query: 565 QLVQQSDT-VEWDDAQGTLKAWRRLQIGQLTVKVQPL---AKPSEDELHQAMLNGIRDKG 620 +V++S + W + + A +++ + + + + + + + L +G Sbjct: 681 HVVKRSHSAPHWSSKRASAMARQKVTLYGVPLVADRVVGYGRIDPEAAREIFLQHALIEG 740 Query: 621 L--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL 678 + ++ + L L D + DE L + + + Sbjct: 741 DWRTRHHFFRDNRALIQELEELEAKTRRRDLL-ISDEQLFRFYDERIPRTVVSGRHFDSW 799 Query: 679 KS------LDIYQALRGLL---DWGMQQRLDSELPAHYTVPTGSRIAIRYHEDN 723 D+ L D + + + ++ P + V + + Y Sbjct: 800 WKTQRHETPDLLTLTEKDLLAADESVAEAIAADFPDSW-VQGDITLPLSYAFGE 852 >UniRef50_A2EN72 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2EN72_TRIVA Length = 890 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 151/650 (23%), Positives = 270/650 (41%), Gaps = 76/650 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 + LP+ ++L + V++ TG+GK+T L G G+I+ +PRR+A Sbjct: 187 AKLPIMDFREKILKVISENSVVIIVGETGSGKTTQLTQFFYEDGYGKFGQIVCTQPRRVA 246 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A ++A+R+A+ + + G VGY +R + + T ++ +T+G+L R + +L ++ Sbjct: 247 ACSIAKRVADEMGVELGGLVGYAIRFEEALSDKTIIKYMTDGILLRESLNEDDLYKYSVI 306 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D+ +L + R DLK+++ SAT+D + + AP+ +GR+ Sbjct: 307 IMDEAHERALNTDVLFGVLKKIL-SRRSDLKVIVTSATMDASKFSKYFGGAPIFHIQGRT 365 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI---- 236 + VE +L +AV A + L++ G +L+F+ G +++ + + + Sbjct: 366 YDVEPFFLRSNPQDYVYEAVRQACSIHLKESPGDILIFMTGQDDVECTCQLIREHLAKIE 425 Query: 237 -GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 ++ + P+Y L + Q K +RK V+ATNIAETSLTI+GIR V+D + Sbjct: 426 NAPEMAVFPIYSQLPVEQQAKVFENLK--IRKCVVATNIAETSLTIDGIRYVIDSGFCKQ 483 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE-RAAAQSEPEILQ 354 + + GL L+ Q +SQA+ TQR GRAGR G L + + + PE+ + Sbjct: 484 KSYSSKAGLDTLLVQPISQAAATQRMGRAGRTSEGKCWRLFTETSFKYEMLPMTIPEVQR 543 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAA 413 ++L+ +++ L G D ++D PP+ N L A L L AL+ +L+ G+ M Sbjct: 544 TNLANVILLLKSLGFDDVLSFDFMDPPPLDNFLHAMNQLWSLRALDNEGKLTKLGKDMVQ 603 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG-NSDLGVAFSRNQPAWQQRSQQL 472 DP L+ ML+ I ++L + + Sbjct: 604 FPLDPTLSKMLLVGNKFGCLEEILTIVSMLSVSEIFYKPHGREEEADAMRMKFLVPESDH 663 Query: 473 LKRLNVRGGEADSS-----------LIAPLLAGAFADRIARRRGQDGRYQLAN------- 514 L LNV ++ A F + + D R QL + Sbjct: 664 LTMLNVFNLWFNAGLNRPTKKEQEQERAIFAKRHFLHNVTLCKALDIRQQLEDIALQGGM 723 Query: 515 ---------------------------------------GMGAMLDANDALSR----HEW 531 G+ ++ +L+ E+ Sbjct: 724 KMSHCGLENWDIVRKVICSSYFHHAAHLKNLSTYYNIQTGVECIVHPTSSLAGLSYIPEY 783 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 ++ L+ + +D L Q P+ +D +G Sbjct: 784 IVYHELVLTKRH---YLHGVTAIDPLWLSQMAPEFFTATDLYGNPLEEGK 830 >UniRef50_C8NRG4 ATP-dependent helicase n=10 Tax=Corynebacterium RepID=C8NRG4_COREF Length = 811 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 257/829 (31%), Positives = 414/829 (49%), Gaps = 54/829 (6%) Query: 2 SSLPVAAVLPELLTALDCAPQ-VLLSAPTGAGKSTWLPLQLL------------AHPGIN 48 + LP +L +L L +++ +P G GK+T +P + Sbjct: 14 AGLPAQTLLDDLSGTLATGATNLVIQSPPGTGKTTVVPPAVANAVRNHPDLYPAHDGRGP 73 Query: 49 GKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMI 108 G +++ PRR+A R A+RLA+L + G+ VG+ +R ++ G + ++ +T GVL R + Sbjct: 74 GPVLVTAPRRVAVRAAARRLAQLDGSRVGERVGFTVRGEHHQG--SHVQFLTPGVLMRRL 131 Query: 109 QRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML 168 DPEL+GV VI+DE HER L DL + +L + LRDD L+ MSATLD +R ++L Sbjct: 132 LADPELAGVHAVIIDEVHERQLDTDLLVGMLTE-LSQLRDDFALIAMSATLDAERFAELL 190 Query: 169 PEAPVVISEGRSFPVERRYLPLPAHQRFD--------DAVAVATAEMLRQESGSLLLFLP 220 A V+ ++ PVE Y P A + + D +A T++ + + S L+FLP Sbjct: 191 G-AQVLSAQAPVHPVEVHYQPGTAPRLTEKGVGWEYLDHLARLTSDAVARRQESALVFLP 249 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 GV EI+RV L +D+ + PL+G L+ +Q +A+ P ++V++T +AE+SLT Sbjct: 250 GVREIERVTATLNR--LTDLEVLPLHGRLTPAEQDRAL--TPTNRPRIVVSTPVAESSLT 305 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + G+R+VVD R R D +T L+T +Q+S QRAGRAGR PG + A+E Sbjct: 306 VPGVRIVVDSGLSRSPRRDAARNMTGLVTVSCAQSSADQRAGRAGREGPGEVIRGYAQED 365 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + PEI +DL+ + L WG + + PP L AA+ LQ +GA++ Sbjct: 366 YAHFQPFTTPEIQSADLTQAALWLACWGTPRGEGLPLITAPPAPALEAAEATLQAIGAVD 425 Query: 401 -GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFS 459 +++ G++++ L P L A LV+ AA + A+L + PR G+ + S Sbjct: 426 GDGAVTSLGRRLSTLPLAPHLGAALVA-----YGPQAAGVLAVLADDPR-GDVEKQARTS 479 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAM 519 R A+ + + L+RL G ++ A IA RR D Y LA+G A Sbjct: 480 RGNRAFDREVAR-LRRLAPDTGTTRGVSAGQIIGTALPGLIA-RRETDTDYLLASGTRAT 537 Query: 520 LDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQ 579 L + LS WL + + + R + +++ +T Sbjct: 538 LM-DRELSGAPWLAIADITRSGSRALIRAAARIE------EAAALEIIGVRETTRATVTG 590 Query: 580 GTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLC 639 G ++A + G + + P + + ++ +A+ I +GL + ++ +A L RL Sbjct: 591 GKIQARQVRAAGAIELSSTP-TRATPEDAARAVTAAIEREGLGLFTFSDKAAALAHRLRF 649 Query: 640 AAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRL 699 + L E WP ++ A + WL P + + + R + +D++ AL+ LL W + Sbjct: 650 LHEHLGE-PWPDIE----AADVHLWLGPELEQIATGRPIDRIDLHPALQRLLPWPEASHM 704 Query: 700 DSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQ 759 + P H TVP+G+R I Y + P + V++QE FG T+P + +P+ LLSPA Sbjct: 705 EELAPTHLTVPSGNRHRIDY-AEGRPVVRVKLQECFGLDTSPELCG--LPVQFHLLSPAG 761 Query: 760 RPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 RPL +T DL+ FW G Y +V+ EM+GRYP+H WP+DP T R KK Sbjct: 762 RPLAVTDDLASFWSGPYAQVRAEMRGRYPRHPWPEDPWTAPATARVKKR 810 >UniRef50_C5BR02 ATP-dependent helicase HrpA n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR02_TERTT Length = 1353 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 200/840 (23%), Positives = 350/840 (41%), Gaps = 123/840 (14%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LP++A E+ + ++ V+L+ TG+GK+T LP L G+ G I +PRR+AA Sbjct: 82 ALPISAKRDEIKSLIEANQVVILAGETGSGKTTQLPKICLELGRGLRGMIGHTQPRRIAA 141 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ L + G VGY++R + T ++++T+G+L IQ+DP L +I Sbjct: 142 RTVASRIADELQVQLGSEVGYQVRFTDHSNSATHIKLMTDGILLAEIQQDPLLYKYDTLI 201 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVIS 176 +DE HERSL D L L V + R DLKL++ SAT+D + + APV+ Sbjct: 202 IDEAHERSLNIDFLLGYLKGVLKQ-RPDLKLIVTSATIDLQKFAAHFSDQDGKPAPVIEV 260 Query: 177 EGRSFPVERRYLPLPAH-QRFDDAVAVATAEML---RQESGSLLLFLPGVGEIQRVQEQL 232 GR++PVE Y P Q ++A+ A E+L + G +L+FL G EI+ + Sbjct: 261 SGRTYPVETLYRPWDDDYQDINEAIVGAIEEILTMPHKSDGDILVFLSGEREIREASHAI 320 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 + + PLY LSL +Q + R+VVLATN+AETSLT+ GI V+D + Sbjct: 321 KKADFRHLEILPLYARLSLAEQNRVFQA--HRGRRVVLATNVAETSLTVPGIGYVIDPGR 378 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R++R+ RT + RL + +SQAS QR GR GR+ G+ + L + ++PEI Sbjct: 379 ARISRYSVRTKVQRLPIEAISQASANQRKGRCGRVSNGVCIRLYDEADFLGRPEFTDPEI 438 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKM 411 +++L+ +++++LQ D + ++D+P + +LL+ + A++ +++A G+++ Sbjct: 439 QRTNLAAVVLQMLQLRIGDVRKFDFVDRPENRLINDGFKLLEEIQAVDRKGKITALGRQL 498 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQ 470 +L DPR A ++++ + I + L + PR ++ A + + Sbjct: 499 YSLPLDPRFARIILAGAEHNCLREILIIVSGLSIQDPRDRPAEKRQAADEKHRRFWDENS 558 Query: 471 QLLKRLNVRG------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLA-NGMGAMLDAN 523 L N+ E + + L F + + R +D +QL G L N Sbjct: 559 DFLGFYNLWNYIEEQRQELSQNQLQKLCKKEFINYLRVREWRDLHHQLRLAIKGLGLKEN 618 Query: 524 DALSR----HEWLIAPLLL----------------QGSASPDA----------------- 546 + H L+ LL +G A Sbjct: 619 ADPANYENVHRALVVGLLSNLGLKQEEAAKPGNKKEGGRPQQAFSYHGSRNRRFQIFPGS 678 Query: 547 ---------------------RILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKA 584 +A V+ + LV+ +D QG + A Sbjct: 679 SQFKKRPKWLAAAEFIETTQLYAHMAAKVEPLWALDAAEHLVKHHYHEPFYDATQGQVMA 738 Query: 585 WRRLQIGQLTVKVQ---PLAKPSEDELHQAMLNGIRDKG-------------LSVLNWTA 628 + R+ + L + + +K + +E + + +G + +NW Sbjct: 739 YDRITLFGLPLVEKQRVQYSKVNREESREVFIRQALVEGHYWRNKRTKKAVETARVNWQK 798 Query: 629 E-----------------AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTG 671 E L R+ D VDD+ + + L + Sbjct: 799 ANQYGAGDLASIDHFFVYNEALSARVESLEAKSRRRDIL-VDDQVVFDFYDAVLPADIAN 857 Query: 672 VHSLRGLKS-LDIYQALRGLLDWGMQQRLD------SELPAHYTVPTGSRIAIRYHEDNP 724 + S + ++ A +D ++ P + G + +RYH + Sbjct: 858 LASFEHWRKQEEMTNAQLLRMDQESLMLHSAGDITGAQFPDAIEL-DGVTLPLRYHFEPG 916 >UniRef50_C5CA12 ATP-dependent helicase HrpA n=5 Tax=Micrococcaceae RepID=C5CA12_MICLC Length = 1367 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 212/848 (25%), Positives = 352/848 (41%), Gaps = 133/848 (15%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAAR 62 LPVA E++ A+ V+++ TG+GK+T LP LA G G I +PRR+AAR Sbjct: 30 LPVAERREEIMAAIRDHQVVIVAGETGSGKTTQLPKMCLALGLGEAGSIGHTQPRRIAAR 89 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R+A+ L E+ G TVGY++R TR++V+T+G+L I DP+L ++I+ Sbjct: 90 SVAERIAQELGEEIGQTVGYQVRFTAQTSKATRVKVMTDGILLAEIPHDPQLRRYSVIIV 149 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP------------- 169 DE HERSL D L L ++ R DLK++I SAT+D +R + Sbjct: 150 DEAHERSLNIDFLLGYLRNLLPQ-RPDLKVIITSATIDPERFARHFGRSLAAGEDHADAV 208 Query: 170 ---------EAPVVISEGRSFPVERRYLPLPAHQRFD----------------DAVAVAT 204 AP++ GR++PVE RY PL D DA+ A Sbjct: 209 EADDGGRVVPAPIIEVSGRTYPVEIRYRPLTEEPSPDDPEDDADDAAETRDPLDAIGDAV 268 Query: 205 AEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG-----SDVLLCPLYGALSLNDQRKAIL 259 E+ + G +L+FLPG EI+ + L + + + PL+G LS+ +Q + Sbjct: 269 LELAAEPPGDILVFLPGEREIREAADHLTGVVAGTTRLAGTEILPLFGRLSMAEQHRVFG 328 Query: 260 PAPQGM-RKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMT 318 A G+ R++VLATN+AETSLT+ GI+ V+D R++R+ RT + RL +RVSQAS Sbjct: 329 RAGAGVRRRIVLATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASAN 388 Query: 319 QRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGC----SDPAQ 374 QRAGR+GR GI++ L ++E ++PEIL++ L+ +++++L G D + Sbjct: 389 QRAGRSGRTSDGIAIRLYSEEDYLSRPEFTDPEILRTSLASVILQMLSLGVARTPGDVKE 448 Query: 375 MSWLDQPPVVNLLAAKRLLQMLGALEGER-----LSAQGQKMAALGNDPRLAAMLVSAKN 429 ++ P + L LGALE ++ G+++A L DPRL M++ A Sbjct: 449 FPFVQPPDGRQVTDGAATLTELGALEAGGARAGTITRVGRRLARLPVDPRLGRMILEAGE 508 Query: 430 DDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQL------LKRLNVRGGE 482 IAA L + PR ++ A + + L R E Sbjct: 509 RGCVREVMVIAAALTIQDPRERPTEQREAADELHRRFADENSDFSAILNLWAYLRERQQE 568 Query: 483 ADSSLIAPLLAGAFADRIARRRGQD----------------------------------- 507 S L + + + QD Sbjct: 569 LSGSQFRKLCRREHINWLRVQEWQDLVRQLRQLTKDVGLTVEAGPVDPVGRHEAVHKSLL 628 Query: 508 --------------GRYQLANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLA 551 Y A G + AL RH +++A L++ S Sbjct: 629 TGLLSQIGAYDERRREYAGARGTRFAVFPGSALFKKRHPFVMAAELVETSRLWA---RTV 685 Query: 552 LLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV---KVQPLAKPSEDE 607 ++ + + LV+++ + W G++ A ++ + +T+ + + + Sbjct: 686 ARIEPEWAEEVAGHLVKRAYNEPHWSRRAGSVVAREKVTLFGVTLIPDRSVRYGRIDPEL 745 Query: 608 LHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWL 665 + + +G + + A + L D + DE L A + + Sbjct: 746 SRELFIRHALVEGDWRTRHRFFARNRAALEEVDALETRLRRRDL-RIGDEDLFAFYDARI 804 Query: 666 LPHMTGVHSLRGL------KSLDIYQALRGLLDWGMQQRLDSEL-PAHYT--VPTG-SRI 715 + + D+ L + LD++ P +T +P G + Sbjct: 805 PGDVVSERHFDAWWKKARQEQPDLLDLDVAALLTADAEDLDTDAFPTTFTYPMPGGDVEL 864 Query: 716 AIRYHEDN 723 + Y D Sbjct: 865 DLEYTFDP 872 >UniRef50_D1VDH3 ATP-dependent helicase HrpA n=1 Tax=Frankia sp. EuI1c RepID=D1VDH3_9ACTO Length = 1548 Score = 666 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 204/849 (24%), Positives = 344/849 (40%), Gaps = 135/849 (15%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 + LPV+ E+L A+ V+++ TG+GK+T +P L G+ G I +PRRLA Sbjct: 189 AELPVSQRKDEILAAIRDNQVVIVAGETGSGKTTQIPKICLELGRGVTGLIGHTQPRRLA 248 Query: 61 ARNVAQRLAELLN-EKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AR VA R+AE G +GY++R + VG +T ++++T+G+L + D L Sbjct: 249 ARTVADRIAEETGAGSLGGIIGYQVRFTDQVGDDTLVKLMTDGILLAELGTDRLLRQYDT 308 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I+DE HERSL D L L + R DLK++I SAT++ +R + +AP++ GR Sbjct: 309 LIIDEAHERSLNIDFILGYLRRILP-RRPDLKVVITSATIETERFSRHFGDAPIIEVSGR 367 Query: 180 SFPVERRYLP--------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 ++PVE RY P + A+ A E+ + G +L+FL G EI+ + Sbjct: 368 TYPVEVRYRPVVDPDDPEADPDRDVITAICDAVDELSAEGLGDVLVFLSGEREIRDTADA 427 Query: 232 LASRIGSDV---LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 LA R ++ + PLY LS +Q + P P R++VLATN+AETSLT+ GI+ VV Sbjct: 428 LARRPSKELLPREILPLYARLSTAEQHRVFQPHPG--RRIVLATNVAETSLTVPGIKYVV 485 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQS 348 D RV+R+ R + RL + VSQAS QRAGR GR GI + L A++ + + Sbjct: 486 DAGTARVSRYSHRLKVQRLPIEPVSQASANQRAGRCGRTSDGICVRLYAEDDFDARPEYT 545 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-------- 400 +PEIL+++L+ +++ + G + A +LD P + LL LGA E Sbjct: 546 DPEILRTNLASVILSMASLGLGEVADYPFLDPPDPRQVTDGLALLHELGAFEAVRPSRAS 605 Query: 401 ----------------------------------GERLSAQGQKMAALGNDPRLAAMLVS 426 RL+ G+++A L DPRLA M+++ Sbjct: 606 APVAPVTPAAPAGPAAPAGSAGSVDPAERAGEGRTPRLTPLGRRLARLPIDPRLARMILA 665 Query: 427 AKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG----- 480 A A I A L R +D A + + + + L LN+ Sbjct: 666 ADEQGALAEVLIITAALAVGDVRERPADAQQAATEKHARFTEPTSDFLGYLNLWNYLREK 725 Query: 481 -GEADSSLIAPLLAGAFADRIARRRGQDGRYQL--------------------------- 512 E S+ L + + R QD QL Sbjct: 726 AAELSSNQFRRLCRAEYLHYLRVREWQDVHSQLRQAARSLGLSTNSAPASPQQVHSALLT 785 Query: 513 ------------------ANGMGAMLDANDALSR--HEWLIAPLLLQGSASPDARILLAL 552 A G + AL + W++A L++ S +A Sbjct: 786 GLLSHIGLFDPEKRDYAGARGARFAVFPGSALFKKPPRWVVAAELVETSRLWG---RVAA 842 Query: 553 LVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV---KVQPLAKPSEDEL 608 ++ + + L+++S W + A ++ + + + + + Sbjct: 843 KIEPEWVEPLAGHLIRRSYSEPHWSRRSAAVLATEKVTLYGVPIVAARSVNYSGIDPALC 902 Query: 609 HQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLL 666 + + +G + + AE +L D VDD+++ + + Sbjct: 903 RELFIRHALVEGDWETKHAFFAENSRLLSDAADLEHRARRRDIV-VDDQTIFDFYDARIP 961 Query: 667 PHMTGVHSLRGL------KSLDIYQALRGLLDWGMQQRL-DSELPAHYTVPTGS----RI 715 + ++ + +L + + + P + P G R+ Sbjct: 962 VDVVSGRHFDAWWKKTRPRTPGLLTFDPAMLVSETAKGVRADDFPDSW--PAGRDGEHRV 1019 Query: 716 AIRYHEDNP 724 ++ Y + Sbjct: 1020 SLTYQFEPG 1028 >UniRef50_C4KC73 ATP-dependent helicase HrpA n=1 Tax=Thauera sp. MZ1T RepID=C4KC73_THASP Length = 1411 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 206/850 (24%), Positives = 343/850 (40%), Gaps = 130/850 (15%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 LPV+ E+ TAL +++ TG+GK+T LP + G+ G I +PRRLA Sbjct: 81 PELPVSGRRDEIATALAAHQVIIVCGETGSGKTTQLPKIAMTLGRGVAGLIGHTQPRRLA 140 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR A R+A+ L G+ VGY++R + G + ++++T+G+L Q DP L+ + Sbjct: 141 ARATASRIAQELKSPLGEVVGYKIRFTDKTGERSHVKLMTDGILLAETQTDPLLAAYDTL 200 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEA-----PVVI 175 I+DE HERSL D L L + R DLK+++ SATLD +R + +A PV+ Sbjct: 201 IIDEAHERSLNIDFLLGYLKTLLP-RRPDLKVVVTSATLDAERFARHFADAAGKPAPVIE 259 Query: 176 SEGRSFPVERRYLPLPAHQ-----------------------RFDDAVAVATAEMLRQES 212 GR +P+E RY P+ + + DA+ A E R Sbjct: 260 VSGRLYPIEMRYRPVESEEIDPAAAARSAAKGGREAAKDRSRDLMDALVDAVDEAQRCGP 319 Query: 213 GSLLLFLPGVGEIQRVQEQLAS-RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLA 271 G +L+FLPG EI+ E L + PL+ S +Q + + R+VVL+ Sbjct: 320 GDVLVFLPGEREIREAAEALRKAHHLPGTEILPLFARQSAQEQARVFSAS--NGRRVVLS 377 Query: 272 TNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGI 331 TN+AETSLT+ GIR VVD R+ R+ PR + +L +++++++ QRAGR GR+ GI Sbjct: 378 TNVAETSLTVPGIRYVVDTGLARIKRYSPRNKVEQLQVEKIARSAAQQRAGRCGRVMDGI 437 Query: 332 SLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKR 391 + L ++ R A ++PEIL+S L+G+++ + ++D P + Sbjct: 438 CIRLYDEDDFNRRPAHTDPEILRSSLAGVILRMKALKLGAVEDFPFIDAPGARLIGDGYA 497 Query: 392 LLQMLGAL---EGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPP 447 LL LGA+ + +L+ G ++A L DPR+ M+++A++ A IAA L + P Sbjct: 498 LLAELGAVSDDDERKLTPTGVELAKLPLDPRIGRMILAARDRGALAELLVIAAALSVQDP 557 Query: 448 RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVR----------GGEADSSLIAPLLAGAFA 497 R D A + ++ Q SS F Sbjct: 558 RERPQDSPGAADQAHARFRGGEQDQKSEFLWYWHLWKAWDEVQRHESSSKQKAWCKKHFL 617 Query: 498 DRIARRRGQDGR------------------------------------------------ 509 + + R +D Sbjct: 618 NYMRMREWRDVFAQLHTLCAEHGWKENEQPANYEAIHKALLAGLLGNIGCKVEDASGPQA 677 Query: 510 --YQLANGMGAMLDANDALSRH--EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQ 565 Y A G+ AL++ +W++A ++ S ++ + + + Sbjct: 678 GAYLGARGIKFWPHPGSALAKKAGKWIMAAEQVETSRLFG---RCIARIEPEWVEEVGGH 734 Query: 566 LVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGL 621 L+++ W A G ++AW R + L + + + + +G Sbjct: 735 LIKRQVFEPHWSKASGAVRAWERGTLYGLVIYPRRGVAYRDIDPALCRELFIREGLVQG- 793 Query: 622 SVLNWTAEAEQLRLR----LLCAAKWLPEYDWPAVD-DESLLAALETWLLPH----MTGV 672 + A A + + + P V DE+L+ A LP + G+ Sbjct: 794 EIAEGPARAMAFLAHNQRLVAEIERLEHKSRRPDVLVDETLIEAFYDSKLPAEVCDLAGL 853 Query: 673 HSLRGLKSLDIYQALRGLLDWGMQQRLDSE------LPAHYTVPTGSRIAIRY-----HE 721 + R + L L R D+E P V G ++ + Y Sbjct: 854 EAWRKPAEKAEPKLLH--LSREQLMRHDAEGVTTDRFPPTLEV-LGQKLKLAYLHQPGEA 910 Query: 722 DNPPALAVRM 731 D+ LAV + Sbjct: 911 DDGVTLAVPL 920 >UniRef50_Q55CD3 DEAD/DEAH box helicase n=2 Tax=Eukaryota RepID=Q55CD3_DICDI Length = 730 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 165/536 (30%), Positives = 261/536 (48%), Gaps = 25/536 (4%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAA 61 SLPV LL V++ + TG GK+T +P L + NG I + +PRR+AA Sbjct: 72 SLPVFTAKDALLKNFKEHSTVIIISETGTGKTTQIPQYLYENGYKDNGIIAITQPRRVAA 131 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++++R+++ + + GD VGY +R + T+L+ +T+G+L R D LS ++I Sbjct: 132 VSISKRVSQEMGVELGDQVGYCVRFDDKTNEKTKLKYMTDGMLVREAMLDSSLSKYSVII 191 Query: 122 LDEFHERSLQADLALALLLDVQQGL--RDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 LDE HER+L D+ LL +Q+ ++ LK++IMSATLD + Q APV+ EGR Sbjct: 192 LDEAHERTLNTDVLFGLLKSIQKRREKKNPLKIIIMSATLDAELFSQYFNNAPVLYIEGR 251 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEML------------RQESGSLLLFLPGVGEIQR 227 FPV+ Y D A+ + ++ G +L+FL G EI+ Sbjct: 252 QFPVQIYYTEEIQKDYVDAALITVLQIHIAHLTDKSINKEEEEDGGDILVFLTGRDEIEN 311 Query: 228 VQEQLASRIGS------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTI 281 +++ L RI D+++CP++ AL Q K AP+G RKV+LATNIAETSLTI Sbjct: 312 LEKLLLDRIPRLPVGSKDLIVCPIFSALPQEQQMKVFEKAPKGSRKVILATNIAETSLTI 371 Query: 282 EGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA 341 GIR VVD + F+P+ G+ L +S+AS QR GRAGR G L +E Sbjct: 372 NGIRYVVDSGAVKSKIFNPKIGIDSLNIIPISKASAKQRTGRAGREFEGKCYRLYTQETF 431 Query: 342 ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-E 400 E+ S PEI +S+++ ++++L G +D +L+ PPV +++ + LL L A+ + Sbjct: 432 EKLDTSSIPEIKRSNIANVILQLKTIGINDILSFDFLESPPVASVIKSLELLFCLDAISD 491 Query: 401 GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFS 459 L+ G+KMA DP + L+ + + + I +IL + Sbjct: 492 NGSLTELGKKMALFPLDPMYSKTLIKSIEFECSEEVLIIISILSVESIFFTPKEKKKEVE 551 Query: 460 RNQPAWQQRSQQLLKRLNVRGGEADSS--LIAPLLAGAFADRIARRRGQDGRYQLA 513 + + + LNV S F + + + + QL Sbjct: 552 DVKKIFFSPDGDHITFLNVFREFQKSKPQQQQQWCFDHFINLKSMIKVLNVFEQLV 607 >UniRef50_B8FCF5 ATP-dependent helicase HrpA n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCF5_DESAA Length = 1357 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 201/819 (24%), Positives = 352/819 (42%), Gaps = 110/819 (13%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 LP++ E++ A+ V+++ TG+GK+T +P LA G++G I +PRR+AA Sbjct: 114 ELPISGRSEEIVEAIQENQVVVITGETGSGKTTQIPKMCLAAGRGVDGLIGCTQPRRVAA 173 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNC--VGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 VAQR+AE L E G +VGY++R + ++++T+GVL Q DP + Sbjct: 174 VTVAQRIAEELGEDLGKSVGYKIRFKETGGKSEAPFIKIMTDGVLLAEFQHDPFFTKYDT 233 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I+DE HERSL D L +L ++ R DLK++I SAT+D ++ + +AP+V GR Sbjct: 234 IIVDEAHERSLNIDFILGILKNLLPK-RPDLKVIITSATIDTEKFSKAFNDAPIVEVSGR 292 Query: 180 SFPVERRYLPL-------PAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQL 232 +PVE RY PL D AV R+ G +L+F+P +I+ + L Sbjct: 293 MYPVEVRYEPLLTSGDENSDAGYVDGAVRAVETIFSRRPKGDILVFMPTESDIRETCDLL 352 Query: 233 ASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +R + L+ PL+G L+ +Q + KVV+ATN+AETS+TI GIR VVD Sbjct: 353 QARRFPNALILPLFGRLAGGEQARVFAR--HSGIKVVVATNVAETSITIPGIRYVVDTGL 410 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 R++R+ PRTG T L ++S++S QR GR GR+ GI + L +E E + PEI Sbjct: 411 ARISRYSPRTGTTSLPVDKISKSSADQRMGRCGRVAEGICIRLYDEEDYESRPQFTLPEI 470 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-------LS 405 L+++L+ +++ ++ + ++D P ++ +L+ LGAL R L+ Sbjct: 471 LRANLAEVILRMVASRLPEVHNFPFVDPPDPRSIRDGFNVLRELGALLDPRQGEKSYTLT 530 Query: 406 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPR----------------- 448 +G+ MA L DPR++A+L+ A A A IA+ L Sbjct: 531 PKGRTMARLPVDPRISAILIEAHPRGCLAEALIIASALCIIDPRERPAEKAVQADQAHRT 590 Query: 449 ------------------MGNSDLGVAFSRNQPA-------------WQQRSQQLLKRLN 477 + D + ++ + W+ QQL L Sbjct: 591 FAHGSSDFLFYLNLWQAYFQHMDKVKSGNQMKKWSIANFLSYKRMREWRDVHQQLTAILI 650 Query: 478 VRG----------------GEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD 521 G + + +A A+ ++A ++ ++ YQ G ML Sbjct: 651 DEGFIKNTLPMPKPFEPGMEDCRYEPLHQSIASAYLSQVASKKDKNI-YQGTKGREVMLF 709 Query: 522 ANDALSRH--EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD-TVEWDDA 578 L H +W+++ ++ S +A + + L + L+ ++ ++ Sbjct: 710 PGSFLFNHGGQWIVSAQMVHTSRL---FARMAANILPEWLEEPAGPLLSRTYLEPHFEKN 766 Query: 579 QGTLKAWRRLQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDK--GLSVLNWTAEAEQL 633 +G + A ++ + L + + + E + + G + + A +++ Sbjct: 767 RGEVIAKEQVSLMGLIIIAGRPTSYGPINPQEATELFIQGALVECQTNEKFGFLAHNQKV 826 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWL--------LPHMTGVHSLRGLKSLDIYQ 685 + L D VD+ + E L L + +D+ Sbjct: 827 LNEARDMEERLRRRDLV-VDELGISRFYEQRLDTVYSIQSLKKIIKDKGGDSFLRMDVTD 885 Query: 686 ALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 + + L S+ P V G++ ++Y D Sbjct: 886 VMVRS---PEAEDL-SQYPNRLKV-DGAKFKLQYRFDPG 919 >UniRef50_Q482P9 ATP-dependent helicase HrpA n=2 Tax=Gammaproteobacteria RepID=Q482P9_COLP3 Length = 1375 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 200/848 (23%), Positives = 343/848 (40%), Gaps = 133/848 (15%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LP++ ++ A+D V+++ TG+GK+T +P L G++G I +PRR+AA Sbjct: 98 GLPISENAAQISAAIDANQVVIIAGETGSGKTTQIPKICLELGRGVDGLIGHTQPRRIAA 157 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+AE L K G+ VGY++R + V + ++++T+G+L +QRD L +I Sbjct: 158 RTVANRIAEELGTKLGEQVGYKVRFNDQVSEQSYIKLMTDGILLAEMQRDRLLLKYDTII 217 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP-----EAPVVIS 176 +DE HERSL D L L + R DLKL+I SAT+D R + AP++ Sbjct: 218 IDEAHERSLNIDFILGYLKQILIK-RPDLKLIITSATIDPQRFAKHFSSKNGLPAPIIEV 276 Query: 177 EGRSFPVERRYLP------------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGE 224 GR+FPVE RY P P + A E+ +G +L+FL G E Sbjct: 277 SGRTFPVEMRYRPLNDRAVIDDDDQSPQEVDIISGILSAVDELSDCGNGDILVFLNGERE 336 Query: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 I+ L + PLY L++++Q + P R +VLATN+AETSLT+ GI Sbjct: 337 IRDTAAALVKANLRHTNVLPLYARLTVSEQNQIFK--PHSGRNIVLATNVAETSLTVPGI 394 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 + V+D R++R+ RT + RL + VSQAS QR+GR GR+ GI + L +++ + Sbjct: 395 KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRSGRCGRVSEGICIRLYSEDDYKSR 454 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG--- 401 A ++PEIL+++L+ +++++ D A +++ P N+ RLL+ + A+E Sbjct: 455 AEFTDPEILRTNLATVILQMHALDLGDIANFPFVEAPDNRNITDGVRLLEEIAAVESIEN 514 Query: 402 -------------ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPP 447 +L+ G+ +A DPRLA M+VS+ I + L + P Sbjct: 515 ADKNAKGKASSTATQLTKSGRLLAKFPIDPRLAKMVVSSIEFGCIEQILIIVSALSIQDP 574 Query: 448 RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEAD------SSLIAPLLAGAFADRIA 501 R + ++ +S + LN+ + + L F + Sbjct: 575 RERPHEKQQLSDEKHNRFKDKSSDFISLLNLWQYINEQKKDLTQNQFRKLCQREFLSYVR 634 Query: 502 RRRGQDGRYQLA-----------------------NGMGA--------MLDANDALSR-H 529 R QD QL G A + + AL+ H Sbjct: 635 LREWQDIFSQLKLTLKEQQITLTSIDYQFSMPNVQQGQAASTAVDKTKETEQDSALTPVH 694 Query: 530 EWLIAPLLLQGSASPDAR-----------ILLALLV---DIDE----------------- 558 + L++ LL + R I + Sbjct: 695 QALLSGLLSHIGQQDENREYKGARGMKFFIFPGSALTKKSPKWLMSAELVETSRLFARMN 754 Query: 559 -------LVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQP---LAKPSEDE 607 L LV+++ W+ QG + A+ ++ + L++ + Sbjct: 755 AKIDPLWLEPLAQHLVKRNYSEPHWEKKQGAVMAFEQVTLYGLSIVSKRKINFNVIEPVT 814 Query: 608 LHQAMLNGIRDKGLSVL--NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWL 665 + + G V+ + ++ +QL + + D+ +D++ L+ L Sbjct: 815 CREIFIREALVNGDCVIKEKFLSKNQQLVESIEELEQKARRRDFL-IDEQHLVDFYSDKL 873 Query: 666 LPHMTGVHSLRGLKS---------LDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIA 716 + S LD +A ++ P + + + Sbjct: 874 PDTVNCQRSFLAWWKKAKRENEQLLDFSKAFLLNESSDELSTIE--YPDVWQQDS-ITLP 930 Query: 717 IRYHEDNP 724 + YH Sbjct: 931 LTYHFSPG 938 >UniRef50_B6BTD8 ATP-dependent helicase HrpA n=2 Tax=Betaproteobacteria RepID=B6BTD8_9PROT Length = 1223 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 167/795 (21%), Positives = 325/795 (40%), Gaps = 82/795 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 S LP+ + ++ + ++ TG+GK+T LP + G N I +PRR+A Sbjct: 7 SPLPILENIDQVAKIIKNNQVTIICGETGSGKTTQLPKICIKIGRGKNKIIGHTQPRRIA 66 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+A+ L G+ VGY++R + +T+++++T+GVL Q DP L + Sbjct: 67 ARSVATRIAQELETSIGNEVGYKVRFTDKTSSHTKIKLMTDGVLLAETQSDPLLKRYDTL 126 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D + + + R DLK++I SAT+D D+ + AP + GR+ Sbjct: 127 IIDEAHERNLNIDFLIGFIKQLLPK-RPDLKIIITSATIDADKFSKHFDGAPTLEISGRT 185 Query: 181 FPVERRYLP-----LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 FPVE Y P +++V E+ R+ SG +L+FLPG +I ++ L Sbjct: 186 FPVETLYRPMKNIEEEDVLSIEESVYEVIQEIGRK-SGDILVFLPGEKDIHDIRRYLNEM 244 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + D + PL+ L + DQ+K + + ++++LATNIAETSLT+ I+ V+D RV Sbjct: 245 LNHDYEVLPLFSRLPVPDQQKIFTTSTK--KRIILATNIAETSLTVPNIKFVIDSGLARV 302 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 R++PR + +L+ +++SQA+ QR GR GR+ PG+ L ++ + + ++PEI++S Sbjct: 303 VRYNPRLRIEQLLIEKISQAAANQRTGRCGRIAPGVCYRLYDEDDFKNRSEYTDPEIMRS 362 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-LSAQGQKMAAL 414 L+ +++ + D ++D P + LL L A+E R ++ G+ MA + Sbjct: 363 SLASVILRMASLNLGDVEVFPFIDAPFKKFIQDGYDLLFELHAVEKNRAITELGRTMAQI 422 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQLL 473 DP + +++ A N + I A + P D + Q + + Sbjct: 423 PIDPVFSRIIIEASNQHCLSEIIPIIAAISVADPIERPFDKLEEAEKAQMNFHDPRSGFM 482 Query: 474 --------------------------------KRLNVRGGEADS---------------- 485 R+ Sbjct: 483 SFYRLWLLLLDEVRSKKIKDFAVFCKKYFLSFTRMREWQEMYKQLMQIVEELGYRFNNKE 542 Query: 486 ---SLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDAN-DALSRHEWLIAPLLLQGS 541 I L I + + Y + ++ + +W++A ++ Sbjct: 543 STYDQIHQSLLCGLLRNIGFKEVESNYYLGCKSLRFLIGPKLFRNKKFKWIMAAEIIDTG 602 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTV---KV 597 I ++ + + L++ ++ + A ++L + L + + Sbjct: 603 KFYAQCI---AEINDQWIEKYAEHLLEAEYSNPRFNKKLNRVDATQKLSLFGLVIVPDRT 659 Query: 598 QPLAKPSEDELHQAMLNGIRDKGLSVLN--WTAEAEQLRLRLLCAAKWLPEYDWPAVDDE 655 + + + + + + E ++L + D ++D+ Sbjct: 660 IHYGPINPELSKSIFIRQGIVENQYISPGLFWKENQKLIREIEDLEHKSRRRDIL-INDD 718 Query: 656 SLLAALETWLLPHMTGVHSLRGLKS---LDIYQAL----RGLLDWGMQQRLDSELPAHYT 708 L + + ++ + + + L L+ + ++ P H T Sbjct: 719 VLFEFYDEKINENVINAAGFEHWRKGVEKNQPEHLYLTKEYLMQHSAKDITETVYPNHIT 778 Query: 709 VPTGSRIAIRYHEDN 723 + + ++YH + Sbjct: 779 I-NQQKYQLKYHFEP 792 >UniRef50_D0LBQ9 ATP-dependent helicase HrpA n=2 Tax=Corynebacterineae RepID=D0LBQ9_GORB4 Length = 1324 Score = 661 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 201/815 (24%), Positives = 336/815 (41%), Gaps = 101/815 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 LPV+A E+ A+ V+++ TG+GK+T LP L G+ G I +PRR+A Sbjct: 86 PELPVSAARTEIAEAIRDHQVVVIAGETGSGKTTQLPKICLGLGRGVRGMIGHTQPRRIA 145 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA+R+A+ GD VGY +R + ++ + V+T+G+L R I DP L + Sbjct: 146 ASSVARRIADETETTLGDVVGYSVRFTDRSSADSLIRVMTDGILLREIGTDPLLRRYDTL 205 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----PEAPVVIS 176 I+DE HERSL D L L + R DLK++I SAT++ +R + E P++ Sbjct: 206 IIDEAHERSLNIDFILGYLRRLLP-RRPDLKVIITSATIEPERFARHFSTPAGEVPILEV 264 Query: 177 EGRSFPVERRYLPLPAHQRFDDA----------------VAVATAEMLRQESGSLLLFLP 220 GR++PV+ RY L + D + A E+ G +L+FLP Sbjct: 265 SGRTYPVDVRYRALTLRESPDHGDDLGGGEHADLDLFQGIDAAIDELWSTGRGDVLVFLP 324 Query: 221 GVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLT 280 +I+ + L R + + PLY LS+ DQ++ AP R++VLATN+AETS+T Sbjct: 325 TERDIRDAADTLRRRASAGAEIVPLYARLSVADQQRVF--APSDGRRIVLATNVAETSVT 382 Query: 281 IEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ 340 + GIR VVD R++R+ RT + RL + +SQAS QRAGR GR+ PGI + L ++E Sbjct: 383 VPGIRYVVDSGTARISRYSTRTKVNRLPIEPISQASARQRAGRCGRVAPGICIRLYSEED 442 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + A ++PEIL+++L+ +++++ D A ++ P + +L LGA+E Sbjct: 443 FDARPAFTDPEILRTNLAAVILQMTSLRLGDIADFPFVAPPDPRAIRDGIAVLTELGAIE 502 Query: 401 G-------ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNS 452 RL+A G+ MA L DPR+A ML++ +AA L P R S Sbjct: 503 MPDGQSGLPRLTAVGRSMARLPVDPRIARMLIAGHELGCLDHLVVLAAALSLPDVRERPS 562 Query: 453 DLGVAFSRNQPAWQQRSQQLLKRLNVR--------------------------------- 479 D A + + L L + Sbjct: 563 DHREAADAAHRRFAVPNSDFLSYLELWSYLEEKRTELSGNQFRRMCEREYLHYLRIREWR 622 Query: 480 ------------------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLD 521 E D+ I + IA R + + A M+ Sbjct: 623 DLTRQLREIVGNLDWSTARTERDADAIHRAVLSGLLSNIAARNAEGREFTGARNTTLMIF 682 Query: 522 ANDALSRHE--WLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDA 578 L++ +L+A +L+ S +D + L +++ W Sbjct: 683 PGSGLAKKPPSFLMAAEILETSRL---FAHTVAGIDPLWAEKLAGPLAKRTYSEPHWSAR 739 Query: 579 QGTLKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQL 633 +G A+ R+ + + + + + + + L +G + + A L Sbjct: 740 RGAAMAYERVTLYGVPLVARRRVDYGRIDPETSRELFLRHALVEGDWHTQHAFFARNRAL 799 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL--KSLDIYQALRGLL 691 + + ++ L + + +T K+ L L Sbjct: 800 LEAAADVEHKVRRKGLV-ITEDQLFDFYDQRVGAEVTSARHFDTWWKKTRRTQPDLLDLT 858 Query: 692 DWGMQQRL---DSELPAHYTVPTGSRIAIRYHEDN 723 + + D++ P + +R +RY D Sbjct: 859 PDDVVTDIAVADTDFPGAWQ-QGDTRFELRYRFDP 892 >UniRef50_B5GG28 ATP-dependent helicase n=3 Tax=Streptomyces RepID=B5GG28_9ACTO Length = 1333 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 211/832 (25%), Positives = 352/832 (42%), Gaps = 105/832 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 LPV+A ++ A+ V+++ TG+GK+T +P L G+ G I +PRRLA Sbjct: 77 PQLPVSAKKDDIADAIRAHQVVIVAGETGSGKTTQIPKICLELGRGVRGMIGHTQPRRLA 136 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA+R+A L+ G+ VG+++R + V T ++++T+G+L IQ D EL + Sbjct: 137 ARTVAERVASELDTPLGEAVGWKVRFTDQVSRGTYVKLMTDGILLAEIQTDRELRAYDTI 196 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HERSL D L L + R DLK++I SAT+D +R + +AP+V GR+ Sbjct: 197 IIDEAHERSLNIDFLLGYLAQLLP-RRPDLKVIITSATIDPERFSRHFGDAPIVEVSGRT 255 Query: 181 FPVERRYLPLPAHQRFDD------AVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS 234 +PVE RY PL A + A+ A E+ R+ SG +L+FL G EI+ + L Sbjct: 256 YPVEVRYRPLLAEDSEEPDRDQVTAIIDAVEELRREPSGDILVFLSGEREIRDTADALEK 315 Query: 235 RIGSDVLLCPLYGALSLNDQRKAILPAPQGM-RKVVLATNIAETSLTIEGIRLVVDCAQE 293 R + PLY LS +Q + A R++VLATN+AETSLT+ GI+ V+D Sbjct: 316 RKFPFTEVLPLYARLSHAEQNRVFKRASGDSARRIVLATNVAETSLTVPGIKYVIDPGTA 375 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R++R+ RT + RL + +SQAS QR GR GR GI + L ++E E ++ EIL Sbjct: 376 RISRYSSRTKVQRLPIEAISQASANQRKGRCGRTSDGICVRLYSEEDFEARPEFTDAEIL 435 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE------RLSAQ 407 +++L+ +++++ G + + ++D P N+ +LLQ LGAL+ E RL+ Sbjct: 436 RTNLASVILQMTSAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDPEQKDPRKRLTQT 495 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQ 466 G+++A L DPRLA M++ A + +AA L + PR S+ + ++ Sbjct: 496 GRRLAQLPVDPRLARMVLEADRNGCVREVMVVAAALSLQDPRERPSEKQAQADQFHARFK 555 Query: 467 QRSQQLLKRLNVR------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN-----G 515 + L LN+ SS + F + + R QD Q+ + G Sbjct: 556 DETSDFLAFLNLWTYIREQQKALSSSAFRRMCRNEFLNYLRIREWQDIYAQVRSVAQQLG 615 Query: 516 MGAMLDANDALSRHEWLIAPLLLQGS------------------ASPDARILLALL---- 553 + D + H L+A LL L Sbjct: 616 LHVNTDDSPPEQVHVSLLAGLLSHIGMKDVKESTAKDPAQQAKEKRRGGNEYLGARGAKF 675 Query: 554 ----------------VDIDELV-QRCPQLVQQSDTVEWDDA------------------ 578 + + + R V EW + Sbjct: 676 AVFPGSALFKKPPRYVMSAELVETSRLWARVNARIEPEWAERLGAHLVKRTYSEPHWEKD 735 Query: 579 QGTLKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGLSVL--NWTAEAEQL 633 Q + A+ ++ + +T+ Q + + + + +G + A+ +L Sbjct: 736 QAAVMAYEKVTLYGVTLAAQRKVNYGRIDPEVSRELFIRNALVEGDWRTHHKFFADNRRL 795 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL------KSLDIYQAL 687 + VDDE+L + + H+ + ++ Sbjct: 796 LTEVEELEHRARRRGIV-VDDEALFDFYDERVPTHVVSGAHFDSWWKRKRQEEPELLDFE 854 Query: 688 RGLLDWGMQQRL-DSELPAHY-TVPTGSRIAIRYHEDN-----PPALAVRMQ 732 R +L Q + + P + P + + Y + + V +Q Sbjct: 855 RSMLLTEAAQGITKDDYPDRWRQGP--LDLRVTYQFEPGADADGVTVHVPLQ 904 >UniRef50_P15938 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 n=7 Tax=Saccharomycetaceae RepID=PRP16_YEAST Length = 1071 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 170/643 (26%), Positives = 275/643 (42%), Gaps = 78/643 (12%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN---GKIILLEPRRL 59 LPV +LL+ + V++ TG+GK+T L L N I++ +PRR+ Sbjct: 349 QLPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKSIVVTQPRRV 408 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCV-GPNTRLEVVTEGVLTRMIQRDPELSGVG 118 AA +VA+R+A + G VGY +R ++ T+L+ VT+G+L R D L Sbjct: 409 AAISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETLLDDTLDKYS 468 Query: 119 LVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 178 VI+DE HERSL D+ L + R DLKL+I SAT++ + AP G Sbjct: 469 CVIIDEAHERSLNTDILLGFFK-ILLARRRDLKLIITSATMNAKKFSAFFGNAPQFTIPG 527 Query: 179 RSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQEQLASRI 236 R+FPV+ Y P + AV+ A L + SG +L+F+ G +I+ + L + Sbjct: 528 RTFPVQTIYTSNPVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDTLQEKF 587 Query: 237 G---------------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTI 281 +D+ + P+Y AL + Q K RK+++ATNIAETSLTI Sbjct: 588 LQVYSKKFGTANFEEINDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTI 647 Query: 282 EGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA 341 +GIR V+DC ++ ++P+ GL L+ +S+A+ QR+GRAGR PG + L ++ Sbjct: 648 KGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRSGRAGRTAPGTAYRLYTEDTF 707 Query: 342 -ERAAAQSEPEILQSDLSGLLMELLQWGCSD-PAQMSWLDQPPVVNLLAAKRLLQMLGAL 399 E Q+ PEI +++LS L+ L +D ++ ++D+PP+ L++ L +GA+ Sbjct: 708 KEDMYLQTIPEIQRTNLSNTLLLLKSLDVTDELSKFPFIDKPPLQTFLSSLYELWFIGAI 767 Query: 400 E-GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVA 457 + +L+ G +MA P L+ +L+ A + + I ++L P + Sbjct: 768 DTSGQLTPLGLQMAKFPLQPSLSKILLIAVRNGCSDEMLTIVSMLSVPQVFYRPKERQKE 827 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQ------ 511 + + L LNV ++ + F + R +D R Q Sbjct: 828 ADIARNKFFIAKSDHLTLLNVFEQWRANNFSSHWCNKHFVQYKSLVRARDIRDQLLTILK 887 Query: 512 ---------------------------------------LANGMGAMLDANDALSR---- 528 L G+ L AL Sbjct: 888 SQKIPVISSGKDWDIIKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDL 947 Query: 529 HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 +++ LL S I VD L++ L Sbjct: 948 PPYVVYHELLMTSKE---YICCVTSVDPFWLMEYGGLLYDIKR 987 >UniRef50_A5DRX8 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DRX8_LODEL Length = 1141 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 156/671 (23%), Positives = 263/671 (39%), Gaps = 103/671 (15%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-------------- 48 SLP AV +++ + ++ TG+GK+T L L + Sbjct: 418 SLPAFAVKDDVVATIRDNQVTIIIGETGSGKTTQLTQYLYEAGLAHNADEAGQGSGLGVA 477 Query: 49 ----GKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVL 104 I +PRR+AA +VA+R++E + K G VGY +R + +T ++ +TEG+L Sbjct: 478 GQEKKMIACTQPRRVAAMSVAKRVSEEMGVKLGAEVGYSVRFDDKTSNSTLIKYMTEGIL 537 Query: 105 TRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRL 164 R I DP L +I+DE HERSL D+ L L + R DLKL++ SAT++ DR Sbjct: 538 LREILADPLLLDYSCIIMDEAHERSLNTDILLGLFKGLLARRR-DLKLIVTSATMNADRF 596 Query: 165 QQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE--------SGSLL 216 + AP GR+FPV+ + + + AV + L G +L Sbjct: 597 TRFFGAAPQFTIPGRTFPVDVYFNRNVSMDYVESAVKQILSIHLGSMAGKLEFVNDGDIL 656 Query: 217 LFLPGVGEIQRVQEQLASRI-----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLA 271 +F+ G +I+ + L ++ + + P+Y + Q+K RKVV+A Sbjct: 657 VFMTGQEDIEITCDILCEKLAMLENPPPLDVLPIYSTMPPEMQKKIFRKKNLARRKVVVA 716 Query: 272 TNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGI 331 TNIAETSLT++GI+ V+DC +V ++P+ G+ L VS A+ QR+GRAGR G+ Sbjct: 717 TNIAETSLTVDGIKYVIDCGLVKVKVYNPKLGMDTLQVVPVSLANADQRSGRAGRTSAGV 776 Query: 332 SLHLIAKEQA--ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAA 389 + L + + AQ PEI +++LS ++ L D +LD PP L + Sbjct: 777 AYRLYTENATSSKCMYAQPIPEIQRTNLSNTMLLLKSLNVKDINNFPFLDPPPKDLLNCS 836 Query: 390 KRLLQMLGALEG-ERLSAQGQKMAALGNDPRLAAMLVSA--KNDDEAATAAKIAAILEEP 446 L + AL+ L+ G +M +P L+ +++ + + I A+L Sbjct: 837 LYDLWAIDALDNYGELTKLGLEMVQFPIEPTLSKLILLSTQPEFHCSEDIVTIVAMLSVS 896 Query: 447 P-RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGE--------ADSSLIAPLLAGAFA 497 + + + + L LNV + + + F Sbjct: 897 NIFFRSKERAKESDLAREKFVVADSDHLTLLNVYTQWEVNVKKFGNNWTKLTQWCEKNFL 956 Query: 498 DRIARRRGQDGRYQLANG------------------------------------------ 515 + R ++ R QL Sbjct: 957 QLKSLHRAKEIRRQLVQIMHKNKLPLLKSYHDDDVRKCLCATFYHQAAKLIKTNVNGSPE 1016 Query: 516 --------MGAMLDANDALSRH----EWLIAPLLLQGSASPDARILLALLVDIDELVQRC 563 M L +L +++ L+ S + V+ L++ Sbjct: 1017 FINLRHSYMKMYLHPTSSLLDSNMGLNYVVYHELVLTSKEYMNYV---TCVEPTWLLEYG 1073 Query: 564 PQLVQQSDTVE 574 + + V Sbjct: 1074 YKFYGVPENVR 1084 >UniRef50_B9WL64 Pre-mRNA-splicing factor ATP-dependent RNA helicase, putative n=7 Tax=Saccharomycetales RepID=B9WL64_CANDC Length = 1050 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 158/547 (28%), Positives = 250/547 (45%), Gaps = 39/547 (7%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP--------GINGKIILLE 55 LP AV +LLT + ++ TG+GK+T L L G I + Sbjct: 335 LPAFAVRNDLLTTIRDNQVTIVIGETGSGKTTQLTQFLYEDGFGSNIDKNGEKKIIACTQ 394 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVG-PNTRLEVVTEGVLTRMIQRDPEL 114 PRR+AA +VA+R++E +N K G+ VGY +R ++ T ++ +TEG+L R I DP L Sbjct: 395 PRRVAAMSVAKRVSEEMNCKLGEEVGYSIRFEDKTNNKKTIIKYMTEGILLREILVDPLL 454 Query: 115 SGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVV 174 +I+DE HERSL D+ L L ++ R DLKL+I SAT++ +R + AP Sbjct: 455 INYSCIIMDEAHERSLNTDILLGLFKNLLSK-RKDLKLIITSATMNANRFTKFFGAAPQF 513 Query: 175 ISEGRSFPVERRYLPLPAHQRFDDAVAVATAEML----------RQESGSLLLFLPGVGE 224 GR+FPVE + + AV L G +L+F+ G + Sbjct: 514 HIPGRTFPVEIFFNRDVNMDYVEMAVKQILTIHLGRWNINATNGNGNDGDILVFMTGQED 573 Query: 225 IQRVQEQLASRI-----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSL 279 I+ + + ++ + + P+Y + + Q+K RKVV+ATNIAETSL Sbjct: 574 IEITCDLIKEKLDLLEDPPPLDIYPIYSTMPQDLQKKIFNKMNLQRRKVVVATNIAETSL 633 Query: 280 TIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKE 339 T++GI+ V+DC +V ++P+ G+ L +S A+ QR+GRAGR GI+ L ++ Sbjct: 634 TVDGIKYVIDCGLVKVKVYNPKLGMDTLQMVPISLANADQRSGRAGRTGAGIAYRLYTEK 693 Query: 340 --QAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLG 397 Q PEI +S+LS +++ L +D +LD PP L + L +G Sbjct: 694 ATDPNNMYIQPIPEIQRSNLSNIMLLLKSLKINDINSFPFLDPPPKDLLNCSLHDLWAIG 753 Query: 398 ALEG-ERLSAQGQKMAALGNDPRLAAMLVSA--KNDDEAATAAKIAAILEEPPRM-GNSD 453 AL+ +L+ GQ M +P LA +++ + + I A+L P + Sbjct: 754 ALDNLGQLTKLGQSMIQFPIEPTLAKLILLSTQSEFHCSEEIITIVAMLSVPNIYNRPKE 813 Query: 454 LGVAFSRNQPAWQQRSQQLLKRLNVRGGEA--------DSSLIAPLLAGAFADRIARRRG 505 + + L LN+ D + I F + R Sbjct: 814 RSNEADMAREKFIISESDHLTLLNIFNQWEINLNKFKGDYNKINNWCNKNFLQLKSLYRV 873 Query: 506 QDGRYQL 512 +D +YQL Sbjct: 874 KDIKYQL 880 >UniRef50_Q03319 Probable ATP-dependent RNA helicase prh1 n=2 Tax=Schizosaccharomyces RepID=PRH1_SCHPO Length = 719 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 158/629 (25%), Positives = 270/629 (42%), Gaps = 63/629 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAA 61 +LP+ L + +++ TG+GKST +P L P G + + +PRR+AA Sbjct: 95 NLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEGCVAITQPRRVAA 154 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 N+A+R+A + G+ VGY +R + TR++ +T+G+L R + DP LS +I Sbjct: 155 VNLAKRVAAEQGCRLGEQVGYSIRFDDTTSKKTRIKYLTDGMLLRELINDPILSQYHTLI 214 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER+L D+ L + + + R L+++IMSATL+ +R + A + GR + Sbjct: 215 LDEAHERTLMTDMLLGFVKKIIKK-RPALRVIIMSATLNAERFSEFFDGAEICYISGRQY 273 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG---- 237 PV+ Y P D + + G +L+FL G EI+ ++ + S Sbjct: 274 PVQIHYTYTPEPDYLDACLRTIFQLHTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPS 333 Query: 238 --SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + CPL+ +L Q + LPA RKVVL+TNIAETS+TI GIR V+D ++ Sbjct: 334 NLPQIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKI 393 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 +F+ + GL L Q +SQ++ QR+GRAGR G + + ++ ++ PEI + Sbjct: 394 KQFNSKLGLESLTVQPISQSAAMQRSGRAGREAAGQCYRIYTEADFDKLPKETIPEIKRI 453 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAAL 414 DLS ++ L G +D ++D P LL A L +GAL+ ++ G +M+ + Sbjct: 454 DLSQAVLTLKARGQNDVINFHYMDPPSKEGLLRALEHLYSIGALDDNGHINDLGYQMSLI 513 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQLL 473 P LA +++A+ + + + + L + + + + LL Sbjct: 514 PLLPSLARAVLAAREHNCLSEVIDVVSCLSTDSMFLFPQEKRDEAIEARLKFLHSEGDLL 573 Query: 474 KRLNVRGGEADSSL--IAPLLAGAFADRIARRRGQDGRYQLA------------------ 513 LN +SS + F +R A + D R QL Sbjct: 574 TCLNALRQYLESSHDSRKQWCSQNFINRRALKTILDIRKQLREHCLKDGWELNSSPEVNS 633 Query: 514 ----------------------------NGMGAMLDANDALSRH--EWLIAPLLLQGSAS 543 + + +L E ++ L+ + Sbjct: 634 ENLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTK- 692 Query: 544 PDARILLALLVDIDELVQRCPQLVQQSDT 572 + + + + L P + + T Sbjct: 693 --SYVRGVSSIRSNWLNAVAPHYLARRST 719 >UniRef50_A5DZ49 Pre-mRNA splicing factor ATP-dependent RNA helicase PRP2 n=1 Tax=Lodderomyces elongisporus RepID=A5DZ49_LODEL Length = 900 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 158/532 (29%), Positives = 254/532 (47%), Gaps = 19/532 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN---GKIILLEPRRL 59 SLPV E L + +++ TG+GK+T LP L I +PRR+ Sbjct: 322 SLPVYKFRDEFLRLISENQVLIVVGETGSGKTTQLPQYLYQAGYSQNDTKIIGCTQPRRV 381 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VAQR+A+ + E G+ VGY +R + NTR++ +T+G+L R +PE+ G Sbjct: 382 AATSVAQRVAQEMQEPLGEKVGYTVRFDDKSSRNTRIKYLTDGMLLREFLNNPEMDSYGA 441 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER+L ++ L+LL D+ R DLK++I SAT++ + + AP++ GR Sbjct: 442 IMIDEAHERTLSTEILLSLLKDLTNSTRSDLKIIIASATINATKFSEFFNNAPILNIPGR 501 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPV+ Y P + L Q G +L+FL G EI+ +++Q+ I Sbjct: 502 RFPVKIHYTKQPEANYLQAVMTTIFQIHLTQPLPGDILVFLTGQEEIESLEQQMQEAIAK 561 Query: 239 ---------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 +++C +Y L Q++ P P RK+VLATNIAETS+TI G+ V+D Sbjct: 562 LGDQLKEQGKIMVCSIYANLPNEQQQRIFEPTPPFTRKLVLATNIAETSITIPGVSYVID 621 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQS 348 + F+P TG+ L+ S+A+ QRAGRAGR+ PG + K + + Sbjct: 622 PGYVKQTEFNPHTGMESLLVVPCSKANCDQRAGRAGRIGPGKCFRIFTKHSFDHEMEMNT 681 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQ 407 +PEI + +L+ +++ LL G +D + +LD P +++ + LL LG L L+ Sbjct: 682 KPEIERINLNSVVLLLLSLGINDLIKFPFLDPPNRQSIIKSLSLLYQLGGLNSRGELTRT 741 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVA---FSRNQPA 464 G KM+ DP A ++S++ I A+L E + + + Sbjct: 742 GMKMSEFPLDPTYAKCILSSERFGITKEICIIIAMLTESSNLYYIPKKLDKEMVKKRHEQ 801 Query: 465 WQQRSQQLLKRLNVRGGEADS-SLIAPLLAGAFADRIARRRGQDGRYQLANG 515 + + L LNV A + F +R +D QL Sbjct: 802 FVDKQGDHLTLLNVYKQWAGTGGYSNQWCQDYFIQYKTMKRVRDIYKQLIGI 853 >UniRef50_B2GLW1 ATP-dependent RNA helicase HrpA n=7 Tax=Bacteria RepID=B2GLW1_KOCRD Length = 1418 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 213/871 (24%), Positives = 358/871 (41%), Gaps = 156/871 (17%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 +LPV+A ++++A+ V+++ TG+GK+T LP L G G I +PRR+AA Sbjct: 58 NLPVSARREDIMSAIRENQVVVVAGETGSGKTTQLPKMCLELGLGERGLIGHTQPRRIAA 117 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R+VA+R+A L E+ G TVGY++R + VG ++R++++T+G++ I DP LS +I Sbjct: 118 RSVAERIAHELGERVGATVGYQVRFTSEVGRDSRIKLMTDGIMLAEISHDPTLSRYNAII 177 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP------------ 169 +DE HERSL D L L + R DLK++I SAT+D R + Sbjct: 178 IDEAHERSLNIDFLLGYLRRLLPQ-RPDLKVVITSATIDPQRFAEHFAQPDPEHPEAEPV 236 Query: 170 EAPVVISEGRSFPVERRYLPLPAHQRFD--------------------DAVAVATAEMLR 209 APV+ GR++PVE RY PL + D DAV A E+ R Sbjct: 237 PAPVIEVSGRTYPVEIRYRPLTQERSGDGGPDEEDTGDGLADEDRDPIDAVCDAVVELSR 296 Query: 210 QESGSLLLFLPGVGEIQRVQEQLAS-----RIGSDVLLCPLYGALSLNDQRKAILPAPQG 264 + G +L+F G EI+ Q+ L R + + PL+G LS+ +Q + + Sbjct: 297 EPRGDILVFFAGEREIRDAQDALQKVIDSHRSLAGTQILPLFGRLSMAEQNRVFSQSSH- 355 Query: 265 MRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRA 324 R++VLATN+AETSLT+ GI+ VVD R++R+ RT + RL +R+SQAS QR+GR+ Sbjct: 356 -RRIVLATNVAETSLTVPGIKYVVDPGTARISRYSARTKVQRLPIERISQASAKQRSGRS 414 Query: 325 GRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGC----SDPAQMSWLDQ 380 GR G+ + L ++E E ++PEIL+++L+ ++++++ G D ++ + Sbjct: 415 GRTSDGVCIRLYSEEDFESRPEFTDPEILRTNLAAVILQMISVGVVREPGDILDFPFVQK 474 Query: 381 PPVVNLLAAKRLLQMLGALEGER--------------------------------LSAQG 408 P + LLQ LGAL G L+ G Sbjct: 475 PDPRAVKDGVVLLQELGALRGPGASAEHDDAASPPARRSRGGRRGRGRKGGARGPLTRTG 534 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQ 467 + +AAL DPRL M+V A A + A L + PR + A ++ Sbjct: 535 EILAALPVDPRLGRMIVEADRRGCAREVLVLTAALTVQDPRERPLEKRQAADEFHARFKD 594 Query: 468 RSQQLLK------RLNVRGGEADSSLIAPLLAGAFADRIARRRGQD-------------- 507 ++ L L + E SS L + + + R QD Sbjct: 595 KTSDFLSYGLLWQYLQEQQAELSSSQFRKLCRREYLNFLRIREWQDLYAQLRQIARQSGI 654 Query: 508 ------------------------------------GRYQLANGMGAMLDANDAL--SRH 529 Y+ A G + AL Sbjct: 655 DVGGSREIDVAAHQDDVHKSLLSGLLSNIGVRDERSREYRGARGTRFAIFPGSALFKKSP 714 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRL 588 +W+++ L++ S + + + P LV++S W ++G + A ++ Sbjct: 715 DWIVSAELVETSRLWA---RTNAAIQPEWAEEIAPSLVKRSYSEPHWSRSRGAVMASEKV 771 Query: 589 QIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKW 643 + L + + + + + + +G + + + + Sbjct: 772 TLYGLPLVSERPVLFSSIDPELSRELFIRHALVEGDWQTRHTFVKRNRKALAEVEELENR 831 Query: 644 LPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL--KSLDIYQALRGLLDW----GMQQ 697 + D VDD+ L + + ++ K+ + L L Sbjct: 832 MRRKDL-RVDDQVLFDFYDARVPANVVSQRHFDAWWKKARHQDEHLLDLTPEDLIAPEAP 890 Query: 698 RLDSE-LPAHYTV--PTG-SRIAIRYHEDNP 724 LD++ P + V P G + + Y Sbjct: 891 ALDTDSFPRSWHVHSPEGDLSLDLDYEFAPG 921 >UniRef50_Q1NTJ0 ATP-dependent helicase HrpA n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NTJ0_9DELT Length = 1307 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 207/812 (25%), Positives = 338/812 (41%), Gaps = 97/812 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLL-AHPGINGKIILLEPRRLA 60 + LP+AA E++ + +P V+++ G+GK+T +P L A G KI +PRRLA Sbjct: 18 AELPIAAWQEEIVGQISASPVVIIAGEPGSGKTTQIPKFCLLAGRGRRQKIGCTQPRRLA 77 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +A+RL L VG+R+R + TR++ +T+G+L +QRD EL + Sbjct: 78 AVAMAERLGVELGSSGSSLVGHRVRFSDRTDRATRVKFMTDGILLAEVQRDGELRDYDTI 137 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 I+DE HER+L D L +L D+ RDDLK++I SAT+D + + +APV+ GR+ Sbjct: 138 IVDEAHERTLNIDFLLGILKDLL-ARRDDLKVIITSATIDTAKFSRHFSDAPVIEVSGRA 196 Query: 181 FPVERRYLPLPAHQ-----RFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS- 234 PVE RY P + A A + +G +L+F+P +I+ E + S Sbjct: 197 HPVEIRYQPWDEENGEDPGHVERAAAAVEEILTTSTAGDILVFMPTERDIRETAELINSQ 256 Query: 235 ----RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 R G ++ PLYG LS +Q + P RKVV+ATN+AETS+T+ GIR VVD Sbjct: 257 PAGRRRGGKAVVLPLYGRLSPAEQARIFRPVAG--RKVVVATNVAETSITVPGIRYVVDS 314 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 R+A ++PR +L V+++S QRAGR GR+ PGI + L +E + P Sbjct: 315 GLARIAAYNPRARTHKLPVVPVARSSCDQRAGRCGRVGPGICIRLYREEDYLNRPLYTPP 374 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-------- 402 EI++S+L+ +++ ++ P ++D P + +LL LGA+ E Sbjct: 375 EIVRSNLAEVILRMVALKLGRPDAFPFVDPPSSRAISDGYQLLTELGAVAPEPRRGRQKG 434 Query: 403 ----RLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVA 457 +L+ +G+ MA L DP ++ M++ A+ ++ + IAA L + PR+ +D Sbjct: 435 RPPLQLTPRGRLMARLPLDPCISRMIIEARENNALSEVCVIAAALSIQDPRLRPADKEKE 494 Query: 458 FSRNQPAWQQRSQQLLKRLNVR-------GGEADSSLIAPLLAGAFADRIARRRGQDG-- 508 + L + + + AG F R QD Sbjct: 495 ADEVHGRFAVPGSDFLFYVRLWETSREVLRQTGSLGRLRKFCAGHFLSFQRLREWQDIHE 554 Query: 509 -------------------------------------------RYQLANGMGAMLDANDA 525 YQ G M+ + Sbjct: 555 QILRILKAERGFSFNRTPAEPAAVHRALLSGNLRNIAMKKEKQHYQGGGGRQLMIFPGSS 614 Query: 526 LSR--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD-TVEWDDAQGTL 582 L W++A L++ ++ + + L++ S W+ +G Sbjct: 615 LFGKPPPWIMAAELVETGRL---YARTVAAIEPEWVEPLAGDLMRYSYGNPHWEKRRGQA 671 Query: 583 KAWRRLQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDKGLSV--LNWTAEAEQLRLRL 637 A R I L V + PLA+ E + + +G ++ +L +L Sbjct: 672 VALERGTIFGLPVVTGRKVPLARVDAAEARRLFIQQALIEGEMRGDYDFLRANRELVQQL 731 Query: 638 LCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRG-LKSLDIYQALR----GLLD 692 + D VD+E + + L + L LK LR LL Sbjct: 732 AELEERSRRRDLL-VDEEEIFNFYDRRLPAEVCDQAGLNRLLKKQRGDDFLRLRREDLLS 790 Query: 693 WGMQQRLDSELPAHYTVPTGSRIAIRYHEDNP 724 L + PA + +A+ Y + Sbjct: 791 RPPDDDLPEKFPARLPI-GELELALSYRFEPG 821 >UniRef50_D0MZQ2 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZQ2_PHYIN Length = 910 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 176/639 (27%), Positives = 289/639 (45%), Gaps = 76/639 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAARN 63 LP+ A +++ A++ V+L TG+GK+T +P + + ++ + +PRR+AA Sbjct: 271 LPIYAHRSKIIEAVNDNQVVILVGETGSGKTTQIPQYIWESDRAHARVAITQPRRVAAIT 330 Query: 64 VAQRLAELLN-EKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VAQR+ E N GD+VGY +R + NTRL+ +T+G+L R P L +V+L Sbjct: 331 VAQRVCEEANRGPLGDSVGYCVRFDDTTSKNTRLKFMTDGMLVREALLSPTLERYSVVVL 390 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE--APVVISEGRS 180 DE HER+LQ D+ ++ + R DLK+++MSATLD ++ + V+ GR Sbjct: 391 DEAHERTLQTDILFGIVKRAMRK-RKDLKVVVMSATLDVALFKRFFQDFKPAVIQIPGRM 449 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEMLRQE--SGSLLLFLPGVGEIQRVQEQLASRIGS 238 F V+ Y D A+ L ++ +GS+L+FL G +I+ ++ L S Sbjct: 450 FQVDVFYTAKTQPDYLDSALVAVLQIHLEEKTSNGSILVFLTGQEDIETLETLLEEYARS 509 Query: 239 ------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +++CP++ A+ Q K PAP G+RKV+LATNIAETS+TI G+R VVD Sbjct: 510 LPADALKLMVCPIFAAMPREQQMKVFEPAPAGVRKVILATNIAETSITINGVRYVVDTGL 569 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 + F +G+ L T+ VS+A QR GRAGR PGI L +E E+ ++ P+I Sbjct: 570 VKQRSFVASSGMEMLQTESVSKAQAWQRTGRAGREAPGICYRLFPEETFEQLPERAIPDI 629 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKM 411 + L ++++L G D ++++P +L+ A L LGAL+ +L+ G++M Sbjct: 630 QRVSLEVVVLQLKIMGIDDALAFDFIEKPLKTSLVKALEKLYALGALDNKGKLTTLGRQM 689 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG-NSDLGVAFSRNQPAWQQRSQ 470 A L +P A ML+ A A A + A+L D ++++ + Sbjct: 690 AGLPVEPMYAVMLLKATELGCAEEALSVVAMLSVESIFYSPRDKKAEAAQSRARFVAYEG 749 Query: 471 QLLKRLNVRGGE--ADSSLIAPLLAGAFADRIARRRGQDGRYQL---------------- 512 + LNV G S + + A R + R QL Sbjct: 750 DQITLLNVFNGYIQCGSKQRNKWCRDHYINHRAMTRVESVRLQLKGYLEKLELPIDTSFP 809 Query: 513 ----------------------ANGMG---------------AMLDANDALS----RHEW 531 A G+G + + +L +W Sbjct: 810 DIDPLRKSIVAGFFLNTAMRSVAEGLGGSKTAYKTMCGRSEIVKVHPSSSLFMRNPPPKW 869 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS 570 ++ L+ S I L+++ + LV+ P + Sbjct: 870 VVYNELVFTSKH---YIRSVLVIEKEWLVELAPTFFAKK 905 >UniRef50_C0W153 ATP-dependent helicase HrpB n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W153_9ACTO Length = 824 Score = 657 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 257/834 (30%), Positives = 407/834 (48%), Gaps = 51/834 (6%) Query: 8 AVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH-PGINGKIILLEPRRLAARNVAQ 66 V L L+ + Q++L+A GAGK+T +PL LL P G+II+ +PRR+A R+ A Sbjct: 2 QVRSGLNRVLEDSNQLVLTASPGAGKTTMVPLMLLESLPAEAGRIIVAQPRRVAVRSAAS 61 Query: 67 RLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFH 126 +A LL E G+TVG+RMRA V +TR+E T G L R + DP+L GV VI+DE H Sbjct: 62 YVASLLGEPVGETVGWRMRADTRVSASTRIEFTTTGTLLRRLLADPDLVGVSAVIIDEVH 121 Query: 127 ERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERR 186 ER L ADL+LA LD LRDDL+L+ MSAT D R Q++L + P++ E +P+E + Sbjct: 122 ERHLDADLSLAFALDSAL-LRDDLRLIAMSATADAARFQKLLGDCPLISVETPPYPLETK 180 Query: 187 YLPLPAHQRFDDAVAVATAEMLR-------QESGSLLLFLPGVGEIQRVQEQLASRIGSD 239 ++P ++ A E L GS L F+ + R+ L R Sbjct: 181 WVPFREAGLTAGGLSAAFLEYLASVIERAFNAHGSALAFVDSIANTTRLVTMLTER---G 237 Query: 240 VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFD 299 V PL+G LS +Q A+ G +V++AT IAETSLT+ G+ VVD RV RF+ Sbjct: 238 VPAFPLHGQLSAAEQDTALSFT--GDARVIVATEIAETSLTVPGVNCVVDAGVSRVPRFE 295 Query: 300 PRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSG 359 +G T L+T SQ++M QRAGRA R PG+ ++ RA + PEIL +DL+ Sbjct: 296 VASGTTHLVTVGASQSAMQQRAGRANRTGPGVVYRAFSESDYARALRYAVPEILAADLTE 355 Query: 360 LLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL----EGERLSAQGQKMAALG 415 + W C PA + LD PV L A+ L+ +GAL + ++SA G+ ++++ Sbjct: 356 ATLLAYAWSC--PADLQLLDAFPVAALARAEATLRGIGALETAADRLQISASGRILSSIP 413 Query: 416 NDPRLAAMLVSAKNDDEAAT-AAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQRSQQLL 473 P++A L+SA + AA++AA+L + A P +R + L+ Sbjct: 414 TVPQVAHGLLSACVWGVPSEVAARVAAVLSGSQIFPRAVSVDSAMRSADPQLVKRFKALV 473 Query: 474 KRL---------NVRGGEADSSLIAPLLAGAFADRIARRRG-------QDGRYQLANGMG 517 + + +++ ++ A+ RI R + R+ G G Sbjct: 474 TQWGSDYTQVIEAPKRRLSEADWPGLVVGAAYPQRICRVNPGTVVSTLKPVRFTSVGGTG 533 Query: 518 AMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDD 577 ++A L+ +WL A + + ++ L + + Q S +V+ + Sbjct: 534 FEVEAESELASAQWLAAASVQ--GVNGVVKLRLGAEISEPTALFLADAYRQVSRSVQVN- 590 Query: 578 AQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIR----DKGLSVLNWTAEAEQL 633 G +KA + +G L + +P++ + ++ + ++ +S+ T A QL Sbjct: 591 -NGVIKAIETVSLGALPLHQKPVSATDTE-VYDCLAEALQHCEPAGWISIFKPTKPALQL 648 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW 693 + +P ++ + LE +L +T + R +D LR L W Sbjct: 649 ADTCNYLHSL--DDAYPQINSAWISENLEIFLGTSITELSVGRPCAEVDALTGLRLSLGW 706 Query: 694 GMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLE 753 +++ +P VP+G + + D P ++V++QE FG PTI ++ +E Sbjct: 707 ETAMQIEQLVPRVVKVPSGREVPVTIDPDRGPTISVKLQECFGWRNVPTILGKQIS--IE 764 Query: 754 LLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 LLSPA RPL +T DL+ F+ Y V+ EM+GRYPKH WP+DP T +T + Sbjct: 765 LLSPAGRPLAVTGDLTHFFNETYVTVRAEMRGRYPKHPWPEDPWQATATVKTNR 818 >UniRef50_Q4N829 RNA helicase, putative n=2 Tax=Theileria RepID=Q4N829_THEPA Length = 974 Score = 657 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 149/531 (28%), Positives = 256/531 (48%), Gaps = 35/531 (6%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN-GKIILLEPRRLAAR 62 LP+ ELL+A+ +++ TG+GK+T +P L G I + +PRR+AA Sbjct: 309 LPIYYYRTELLSAIKKYKTLIVVGETGSGKTTQIPQYLHEVGYSRAGVIGITQPRRVAAM 368 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+++ LN K G TVGY +R ++ NT+++ +T+G+L R +P L ++++ Sbjct: 369 SVATRVSKELNVKMGSTVGYCIRFEDYTSSNTKIKYMTDGILLREFASNPTLENYSVIMI 428 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HER+L D+ L+ D+ + R+D +L+I SATL+ ++ AP+ GR +P Sbjct: 429 DEAHERTLHTDVIFGLVKDLIR-YRNDFRLIISSATLEAEKFALYFDNAPIFKIPGRRYP 487 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIG---- 237 V+ Y P D ++ L Q G +L+FLPG EI+ +QE+L +R+ Sbjct: 488 VQIYYTKTPEANYLDASIITILQIHLTQPIDGDILVFLPGQQEIEYIQEELIARLKNRKD 547 Query: 238 -SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 ++++ +Y +L + Q K P P+ RKV+L+TNI+ETS+T++ I V+D +++ Sbjct: 548 IRELIILSIYSSLPSDMQNKIFEPTPENSRKVILSTNISETSITLDNIVYVIDTGFCKLS 607 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQS 355 + P+TGL LI S+A+ QR+GRAGR+ G L K ++ EPEI + Sbjct: 608 LYSPKTGLDSLIVVPCSKANANQRSGRAGRVRAGHCFRLYTKLSYDKEMEDNHEPEIKRV 667 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAAL 414 +LS +++ L G D ++D P +L+ + L+ LG L + L+ G+ M+ L Sbjct: 668 NLSSVVLLLKSIGIDDLLNFDFMDPPTPESLINSLELIYSLGCLNDSGELTKLGKIMSEL 727 Query: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEP-------------------------PRM 449 DP + L+ + + I ++L + Sbjct: 728 PLDPMYSKSLLFSIQHNCHEDIIIILSMLIQSIFYLVIHSFNLHTYPNSISQRLGNNIFY 787 Query: 450 GNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRI 500 D + N + + L LNV ++ + Sbjct: 788 IPKDRRIHAENNYKNFYNNNSDHLMLLNVYNQWKENDFSIAWCYENYLQYK 838 >UniRef50_A8IHD9 DEAH-box nuclear pre-mRNA splicing factor n=2 Tax=Viridiplantae RepID=A8IHD9_CHLRE Length = 689 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 172/542 (31%), Positives = 258/542 (47%), Gaps = 18/542 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK------IILLEP 56 LP A +LL L ++L TG+GK+T +P LLA I + +P Sbjct: 40 QLPAWAARDKLLALLQQHRTLVLVGETGSGKTTQIPQFLLAAKFGKSSGSKGACIAVTQP 99 Query: 57 RRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSG 116 RR+AA VA+R+AE + K G VGY +R ++ P TR++ +T+G+L R DP LS Sbjct: 100 RRVAAMTVARRVAEEMGTKIGQQVGYAIRFEDVTSPATRIKYMTDGLLLREALVDPLLSR 159 Query: 117 VGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVIS 176 +V++DE HER++ D+ L L+ VQ DD +L++MSATLD R P A + Sbjct: 160 YRVVVIDEAHERTVHTDVLLGLIKGVQARRGDDFRLVVMSATLDAARFVDYFPGAVAALV 219 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 GR FPV+ Y P D A+ + G +L+FL G EI + L + Sbjct: 220 RGRQFPVQVLYTARPEDNYLDAAINATLQVHGEEPEGDVLVFLTGQDEIDSAERLLKAAA 279 Query: 237 -----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 ++L+ P+Y AL Q K PAP G RK +LATNIAETS+TI G+R V+D Sbjct: 280 AVGGRPRELLVLPIYAALPPEQQMKVFEPAPPGTRKAILATNIAETSITIPGVRYVIDTG 339 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 + ++ + GL L VSQA QR+GRAGR PG + L + + AA + PE Sbjct: 340 HVKARDYNAKLGLESLAVVPVSQAQARQRSGRAGREGPGKAYRLYTEADFSQLAATTPPE 399 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLS-AQGQ 409 I + +L+ ++++L G D ++D PP +L + LL LGAL+ +L+ G Sbjct: 400 ITRCNLASVVLQLKAMGIDDVLGFDFMDPPPRTAILRSLELLFALGALDNSGKLTEEVGL 459 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQR 468 +++ L DP +L++A A + A++ + + + R Sbjct: 460 RLSRLPVDPMFGRVLLAAAELGCGVEALAVVAMVSADNVFHTPRQKEAEWRAARLKFLSR 519 Query: 469 SQQLLKRLNVRGGEADSSLIAP----LLAGAFADRIARRRGQDGRYQLANGMGAMLDAND 524 L LNV G + + F + A R+ +D QL MG Sbjct: 520 EGDHLTLLNVFRGFMELPKSHKARTGWCSDNFINIRALRKAEDIYTQLVRFMGHPCPPGL 579 Query: 525 AL 526 L Sbjct: 580 GL 581 >UniRef50_C0H5K5 Splicing factor, putative n=2 Tax=Plasmodium falciparum 3D7 RepID=C0H5K5_PLAF7 Length = 1151 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 151/672 (22%), Positives = 266/672 (39%), Gaps = 116/672 (17%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAA 61 SLP+ ELL A+ +++ TG+GK+T + L NG I +PRR+AA Sbjct: 478 SLPIYKSKHELLDAVYNNNIIIIVGETGSGKTTQIVQYLYEEGYHRNGIICCTQPRRVAA 537 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +VA R++ +N G VGY +R ++ +T++ VT+G+L R D EL ++I Sbjct: 538 VSVAYRVSYEMNVDIGSLVGYTIRFEDNTTKDTKIRYVTDGILLRETLNDKELDKYSVII 597 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERS+ D+ L +L ++ R+DLKL++ SAT+D + AP+ +GR+F Sbjct: 598 MDEAHERSINTDVLLGILKNICLK-RNDLKLIVTSATIDAKKFSAFFGNAPIYNIQGRTF 656 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQES-----GSLLLFLPGVGEIQRVQEQLASRI 236 V YL P + + AV A + + G +L+F+ G +I L+ R Sbjct: 657 KVHIEYLRTPCNDYIECAVQKAIQIHVSDNNYDNNFGDILIFMTGQEDINATCYLLSERF 716 Query: 237 GS----------------------------------------------------DVLLCP 244 + P Sbjct: 717 YEVYESYKESKNNKKDTINKIKNILNEDNNNNNNDSNIKKKVDGDNNTNDHMIYPFYIFP 776 Query: 245 LYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGL 304 +Y LS Q K +RK++++TNIAETSLT++GI+ V+D ++ ++ G+ Sbjct: 777 IYSQLSSEQQSKIFKKY--DLRKIIVSTNIAETSLTLDGIKYVIDTGYCKLKVYNQTIGM 834 Query: 305 TRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQSEPEILQSDLSGLLME 363 L +SQA+ QR+GRAGR GI L + + PEI +S+LS +++ Sbjct: 835 DVLQVTPISQANANQRSGRAGRTGAGICYRLYTENTFLCDLYQNNIPEIQRSNLSNVVLL 894 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPRLAA 422 L + + ++D P +++ + L +LGA+ L+ G+KM DP L+ Sbjct: 895 LKSLHVQNLFEFDFIDVPSKESIINSLHELWVLGAINNEGNLTDIGRKMVQFPLDPPLSK 954 Query: 423 MLVSAKNDDEAATAAKIAAILEEPPRMG-NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGG 481 +++ ++N I ++L P + + + + + L LN+ Sbjct: 955 IVIYSQNFQCTKEILIIVSMLSSPSIFLESKENNESIESKKEKFTVPESDHLTLLNIYLQ 1014 Query: 482 EADSSLIAPLLAGAFADRIARRRGQDGRYQ------------------------------ 511 + F A + ++ Q Sbjct: 1015 WRSHNYSYSWCTKNFIQYKALNKAKEVYSQLIDIIKTLNIKNVSCDNKWELIRKTICSGY 1074 Query: 512 ---------------LANGMGAMLDANDALSR----HEWLIAPLLLQGSASPDARILLAL 552 L + + N +L +++I ++ + + Sbjct: 1075 FHNAAKLKSFSEYINLRTNVSCHVHPNSSLYNIGYTPDYVIYQEIVFTTKE---YMRNVT 1131 Query: 553 LVDIDELVQRCP 564 VD + L + P Sbjct: 1132 TVDPEWLCELGP 1143 >UniRef50_Q9VR29 CG3225 n=19 Tax=Neoptera RepID=Q9VR29_DROME Length = 678 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 175/633 (27%), Positives = 273/633 (43%), Gaps = 69/633 (10%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-INGKIILLEPRRLAAR 62 LP+ ++L L+ V+L TG+GKST +P L G I + EPRR++ Sbjct: 47 LPIRQYRDQILYCLEKHQVVILVGETGSGKSTQVPQYLYEWGWHTKGLIGITEPRRVSTV 106 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +A R+A+ E GDTVGY +R + T+++ +TEG+L R + DP L+ G++I+ Sbjct: 107 TLANRVAQERGELVGDTVGYVVRFLESMSSCTKIKFMTEGILLREVLADPLLTQYGVIIV 166 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML-----PEAPV-VIS 176 DE HER++ D+ L LL + + R LKL+I SAT+D + E V + Sbjct: 167 DEAHERNMLTDMILGLLKKILRK-RSSLKLIISSATIDASFFSEFFSWPGSGEVSVKLSI 225 Query: 177 EGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 EGR PV YL P + V ++ G +L FL G E+ + L I Sbjct: 226 EGRMHPVSNFYLNEPCADYVKETVETVWKLHQKEPPGDILAFLTGQEEVLEALDLLREYI 285 Query: 237 GS----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 S ++ + P+YG++S DQ P+G RKVVLATNIAETS+TI GI V+DC Sbjct: 286 ASSEQENLKVLPMYGSMSSTDQLSVFFTPPKGTRKVVLATNIAETSITIPGIVYVIDCGY 345 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEI 352 +V ++P+T L+ VS+AS QRAGRAGR+ PG L K E A + PE+ Sbjct: 346 VKVKWYNPKTCSDSLVIVPVSKASAIQRAGRAGRMRPGKVYRLYTKSDYEALAPRQPPEM 405 Query: 353 LQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLS-AQGQK 410 +S+LSG +++L G + + + PP NLL+A L L A++ L+ G Sbjct: 406 RRSELSGAILQLKALGIGNILRFDFPSPPPAQNLLSALESLFALDAIDEQGNLTKPVGYL 465 Query: 411 MAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDL---GVAFSRNQPAWQQ 467 +A L L+ ML + + I A+L+ + ++ Sbjct: 466 LAELPFSAMLSKMLYVSGQMGCSEEIITIIALLQVQSIFSRPASAVAQQSGRIAHRKFEV 525 Query: 468 RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL--------------- 512 + LN G + + F +R R QL Sbjct: 526 AEGDFITMLNAYTGFVEEGMTKEFCGQYFLIYRNLKRAHSLREQLITVARKKYGIPIFSC 585 Query: 513 -------------------------------ANGMGAMLDANDALS---RHEWLIAPLLL 538 ++G + N L + ++++ LL Sbjct: 586 KGDVEKLCKCITAGFFTQVAYLHHSGVYRQISSGTELAIHPNSTLYTLPQAQYVVYGELL 645 Query: 539 QGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 Q + + ++ + L + P QQ+ Sbjct: 646 QTTKLFMNYV---TVIKREWLTELAPHYYQQTT 675 >UniRef50_Q9BKQ8 Probable ATP-dependent RNA helicase DHX35 homolog n=5 Tax=Bilateria RepID=DHX35_CAEEL Length = 732 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 157/650 (24%), Positives = 271/650 (41%), Gaps = 79/650 (12%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLAA 61 LP+ +L + +++ TG GKST +P LL +I++ +PRR+A Sbjct: 77 LPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVITQPRRVAV 136 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +A R+AE + G VGY +R + +T+++ +T+G+L R I DP LS +++ Sbjct: 137 VTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVKFMTDGLLLREILADPLLSKYSIIM 196 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQML----------PEA 171 +DE HERS D+ L LL + Q +R+DL++++ SATLD + + A Sbjct: 197 IDEAHERSCNTDILLGLLRKIIQ-IRNDLRIIVSSATLDAELFKDFFEMNETGNSDKDTA 255 Query: 172 PVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ 231 ++ EGR+ PV + AV + G +L+FL G E++ V E+ Sbjct: 256 GIISVEGRTHPVAVHHTKTSVPDYCQSAVDTVINIHKHENPGDILVFLTGQDEVEDVCEK 315 Query: 232 LASRIGS-----DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 286 L G+ + + P YGAL +Q KA P G RKVV+ATNIAE S+TI GI Sbjct: 316 LRELAGNLKNCDRLWVVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICY 375 Query: 287 VVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAA 346 V+D ++ G+ L+ VS+AS QRAGRAGR+ PG L + + ER A Sbjct: 376 VIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRAGRAGRIRPGKCYRLYPESEFERFAE 435 Query: 347 QSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLS 405 + PEI + ++ +++L G + + +L PP ++ LL LGA++ +L+ Sbjct: 436 GTVPEIQRCQMASTILQLKALGVQNVHRFHYLSPPPSWAMINGLELLYALGAIDETSQLT 495 Query: 406 -AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQP 463 G +MA P + L+ + + I A+++ + + + Sbjct: 496 SPLGLQMAEFPLPPMHSKCLLKSAEFGCSTEMVTIVAMMQIQDVFITPYRQRHQADVIRK 555 Query: 464 AWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN--------- 514 + + LNV ++ + F + R + R QL Sbjct: 556 KFAVEEGDHMTMLNVFTKFVENGRSKKWCSDHFVNYRGLMRADNVRSQLVRLLKRFEIEK 615 Query: 515 -------------------------------GMGAMLDA---------NDALSRHEW--- 531 G + + + + ++ Sbjct: 616 VSSRGLINCSENIRQCLVTGFFSQAAQYHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKW 675 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 +I ++Q S I +++ + L + P + E + + Sbjct: 676 VIFTEVMQDS------IRDVTVIEPEWLYELAPHYYEFGTEGELAEKRMR 719 >UniRef50_A6W340 ATP-dependent helicase HrpB n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W340_MARMS Length = 707 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 273/706 (38%), Positives = 384/706 (54%), Gaps = 36/706 (5%) Query: 134 LALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLP 191 +A AL L ++ RD+ LKLL+MSATLD + L+ L + S+GRSFP+ Y Sbjct: 1 MAFALCLQARELYRDEDPLKLLVMSATLDTETLEARLG-CSTLTSQGRSFPITTHYSNKA 59 Query: 192 AHQR-FDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG--SDVLLCPLYGA 248 D V T + +ESGSLL+FLPG EI++ QL R+G + + PLYG Sbjct: 60 LKSFQVTDEVVRITCQAFNEESGSLLVFLPGQKEIRQAATQLQQRLGHEEHLSILPLYGE 119 Query: 249 LSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLI 308 LSL +Q I P RK+VLAT+IA+TSLTIEGIR+V+D R ARFD T TRL Sbjct: 120 LSLKEQETVIEPVIAPARKIVLATSIAQTSLTIEGIRVVIDSGLSREARFDASTATTRLH 179 Query: 309 TQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWG 368 T+R +QA QR GRAGR E G+ ++EQ + A Q++P+I SDLS L+M+L +WG Sbjct: 180 TRRATQAETIQRMGRAGRTEAGVCYRWWSEEQQHQLAPQAQPQIEISDLSSLVMDLAKWG 239 Query: 369 CSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-------RLSAQGQKMAALGNDPRLA 421 + ++ W+ PP + A LL L ALE LS G++M+ LG +PRLA Sbjct: 240 VQERLELDWITPPPNSHWQQAIGLLSNLQALEQSSGSSPSLTLSHLGEQMSELGIEPRLA 299 Query: 422 AMLVSAKNDDEAATAAKIAAILEEPPRMGN--SDLGVAFSRN----QPAWQQRSQQLLKR 475 +L+ K + + ++ I IL E + N SDL + Q ++ Q LK Sbjct: 300 RLLLDGKLINNSDASSAICTILSEGDPLSNHHSDLADRLNWLTGHYQAHSKRPRQNYLKA 359 Query: 476 LN-----------VRGGEADSSLIAPLLAGAFADRIARRRGQD---GRYQLANGMGAMLD 521 D + +A LL AFADRIA+R GQD RY+LANG A L Sbjct: 360 QQQWQKRSQQISIQEVSIDDKNDLAFLLIRAFADRIAQRVGQDHDKARYKLANGRLASLS 419 Query: 522 ANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGT 581 + D ++ EW+IA + + RI LA ++D L+ L+ + W + Sbjct: 420 SLDPCAQSEWVIALDIGGHHGQDEDRIFLACPFELDLLLANFTDLLIIKLHLAWSKKEAR 479 Query: 582 LKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAA 641 L + + I +L + Q L PSE+++ QA+ IR +GLSVL W A+QL+ R+ A Sbjct: 480 LLSESQRWISKLCIDKQKLTTPSEEDISQAVCQYIRQEGLSVLPWNESAKQLKARMQFAF 539 Query: 642 KWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDS 701 + WP D LL LETWL P++ V + + + L + L LDW QQ L Sbjct: 540 LHDQQTPWPDCSDNGLLHDLETWLGPYLGKVTNQQAINKLGLNDILLSRLDWNQQQHLHQ 599 Query: 702 ELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRP 761 +PA TVP+G+ I Y + P L V++QEMFG +PT+ + +ELLSP QRP Sbjct: 600 NVPARITVPSGASHTIDYC-EQQPTLRVKLQEMFGYTKSPTVLNQII--RIELLSPGQRP 656 Query: 762 LQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKK 807 L +++DL+ FW+ AY EV+KEM+GRYPKH WP+DP + T +T + Sbjct: 657 LAVSQDLAFFWREAYPEVRKEMRGRYPKHPWPEDPLSALATSKTNR 702 >UniRef50_A5DQ95 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DQ95_PICGU Length = 1084 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 167/697 (23%), Positives = 278/697 (39%), Gaps = 100/697 (14%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP--------GINGKIILL 54 SLP AV ELL + ++ TG+GK+T L LL G I Sbjct: 382 SLPAFAVRHELLRTIAENQVTVVIGETGSGKTTQLTQFLLEDGFGSNLAKNGERLMIGCT 441 Query: 55 EPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQN-CVGPNTRLEVVTEGVLTRMIQRDPE 113 +PRR+AA +VA+R++E K G+ VGY +R ++ T ++ +TEGVL R I D Sbjct: 442 QPRRVAAMSVAKRVSEEYGCKLGEEVGYSIRFEDVTTKEKTIIKYMTEGVLLREILMDAN 501 Query: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPV 173 L +I+DE HERSL D+ L L ++ + R DLKL+I SAT++ +R + P Sbjct: 502 LEHYSCIIMDEAHERSLSTDVLLGLFRNLIR-RRKDLKLIITSATMNAERFMNFFGDVPQ 560 Query: 174 VISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQ------ESGSLLLFLPGVGEIQR 227 GR+FPV+ + D AV L+ G +L+F+ G +I+ Sbjct: 561 FTIPGRTFPVDTLFSKSTCSDYVDAAVKQVMTIHLQNYSKYKRNDGDILVFMTGQEDIEM 620 Query: 228 VQEQLASRI-----GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 E + ++ + + P+Y + + QRK + RKVV+ATNIAETSLT++ Sbjct: 621 TCELVREKLALLDDPPPLDVYPIYSTMPADLQRKIFDKPSETRRKVVVATNIAETSLTVD 680 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQ-- 340 GI+ VVD ++ ++P+ G+ L +S A+ QR+GRAGR PG++ L + Sbjct: 681 GIKYVVDTGLVKLKVYNPKLGMDTLQVVPISLANAQQRSGRAGRTGPGLAYRLYTERAIG 740 Query: 341 AERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE 400 + Q PEI +++L+ +++ L D + +LD PP L + L ++ AL+ Sbjct: 741 EDSMYIQPIPEIQRTNLTNVMLLLKSLKVEDVTKFPFLDSPPTDLLSNSLYDLWIMEALD 800 Query: 401 G-ERLSAQGQKMAALGNDPRLAAMLVSAK--NDDEAATAAKIAAILEEPP-RMGNSDLGV 456 L++ G M + L+ ++ + ++ I ++L P + Sbjct: 801 NCGNLTSLGHNMMVFPIEATLSKLIFLSCRPQFSCSSEIVTIVSMLSVPSVFFRPKERAQ 860 Query: 457 AFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAP----LLAGAFADRIARRRGQDGRYQL 512 + + L LNV + F + R +D R QL Sbjct: 861 ESDAARERFFVAESDHLTLLNVYNQYETQRSKGRKTAAWCSKNFLHHKSLSRARDIRNQL 920 Query: 513 A--------------------------------------------------NGMGAMLDA 522 + M L Sbjct: 921 ILIMKKNKLPILKSTNNDTIRKCLCAVYFHQSATLAKTDFNKGSVYTHLRQSYMNMHLHP 980 Query: 523 NDALSR-----HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP----------QLV 567 AL+ +I L+ + + +VD L++ Q + Sbjct: 981 TSALNSGAEAMASHVIYHELILTTKE---YMSCVTVVDPVWLLEFGAIFFDTTPAVKQRI 1037 Query: 568 QQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPS 604 Q+ V ++ + L+V+ + K S Sbjct: 1038 QEQYGVSL-RSKEQVIKELERDSQALSVEEAKVKKES 1073 >UniRef50_A5G2H1 ATP-dependent helicase HrpB n=2 Tax=Alphaproteobacteria RepID=A5G2H1_ACICJ Length = 809 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 322/814 (39%), Positives = 449/814 (55%), Gaps = 32/814 (3%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRL 59 M LPVAA+LP+L +L + +L AP GAGK++ +P LL + G KI++LEPRRL Sbjct: 1 MDELPVAAILPDLRASLARSANAVLVAPPGAGKTSLVPQALLGADWLGGQKIVMLEPRRL 60 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AAR A+R+A+L+ E PG TVGYR R ++ +GP TR+EV+TEG+LTR + DP L G+G Sbjct: 61 AARAAAERIAQLIGEAPGGTVGYRTRLESVIGPATRIEVITEGLLTRRLLADPGLDGIGC 120 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 VI DE HERSL+ADLALAL LD+Q+GLR +L++L MSAT D L +L EAPV+ S GR Sbjct: 121 VIFDEIHERSLEADLALALTLDLQRGLRPELRILAMSATADIATLTTLL-EAPVIESAGR 179 Query: 180 SFPVERRY--LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIG 237 PV + L + A+A A L G +L FLPGVGEI+R E L G Sbjct: 180 VHPVTIEFAARDLADARDLPAALARAVRGALAAHRGDVLAFLPGVGEIRRAAEALE---G 236 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVAR 297 + + PLYG L +Q + + AP R+V+LAT+IAETSLT+ G+R+VVD R Sbjct: 237 APATIMPLYGDLPPAEQARVL--APSSQRRVILATSIAETSLTVPGVRVVVDGGFRRAPE 294 Query: 298 FDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDL 357 FD LTRL+T+R+S+A+ TQRAGRAGR PG+++ L + PEI ++L Sbjct: 295 FDTGRALTRLVTRRISRAASTQRAGRAGREAPGVAIRLWTEALHRGLPEFDAPEIAAAEL 354 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAALGN 416 SGL++ WG A P L A+ LL LGA++ R+S G++MA LG Sbjct: 355 SGLVLTCAAWGADAAALPFPEPP-PPGALAQARALLTDLGAIDATGRISQAGRRMAELGA 413 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQL---- 472 PRLAAM+++A + EAA AA +AA+LEE + + R + Sbjct: 414 APRLAAMMLAADSAAEAALAADLAALLEERDPLREAGSADIALRLDAIAGRGGGDRGVIA 473 Query: 473 ---------LKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDAN 523 RL +R A L+A F DRI RRG+ G ++L+ G GA LD Sbjct: 474 RIRQAAGTYRGRLGLRRDTQAGGDPAVLIAAGFPDRIGVRRGEPGSFRLSEGGGAKLDPA 533 Query: 524 DALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLK 583 D L+R L L +I LA + + +R + + + D GT+ Sbjct: 534 DPLARAPMLAVAAL---GGRGAPKIGLAAPISAATIEERLAARIVTTREIGLDGTGGTVM 590 Query: 584 AWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKW 643 A R + G L + + + + A+ IR+K +L W+ EA QL+ R+ + Sbjct: 591 ARERRRFGALVLAERSTPASPPE-IEAALREAIREK-PGLLGWSDEARQLQARVALMREI 648 Query: 644 LPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSEL 703 PE WP + DE+L A ETWL P++ G+ L+ +LD+ LR L + LD+ L Sbjct: 649 EPE-GWPDLSDEALRADFETWLFPYLAGMSRLKEAAALDLLAILRDHLGHERVRALDAAL 707 Query: 704 PAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQ 763 PA P G + I Y P A R Q +G P +A G V L + LLSPA RP+ Sbjct: 708 PARIEAPGG-AVPIDYTGP-VPVAAARAQAFYGSDATPRLAGGAVRLQIALLSPAGRPIA 765 Query: 764 ITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPA 797 +T DL+DFW+ + + +K+M+GRYPKH WP++P Sbjct: 766 VTGDLADFWRRGWADARKDMRGRYPKHEWPEEPW 799 >UniRef50_P20095 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 n=11 Tax=Saccharomycetaceae RepID=PRP2_YEAST Length = 876 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 160/526 (30%), Positives = 251/526 (47%), Gaps = 21/526 (3%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING---KIILLEPRRLA 60 LPV ELL + +++ TG+GK+T LP L+ + +I + +PRR+A Sbjct: 223 LPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAITQPRRVA 282 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGL 119 A +VA R+A+ +N G VGY++R ++ PN T L+ +T+G+L R D +LS Sbjct: 283 ATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDSKLSKYSC 342 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +++DE HER+L D+ + LL D+ R LKLLI SAT++ + + P+ GR Sbjct: 343 IMIDEAHERTLATDILIGLLKDILPQ-RPTLKLLISSATMNAKKFSEFFDNCPIFNVPGR 401 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRIGS 238 +PV+ Y P A+ Q G +L+FL G EI+R + +L + Sbjct: 402 RYPVDIHYTLQPEANYIHAAITTIFQIHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSK 461 Query: 239 ------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQ 292 +++ P+Y L Q K P P+ RKVVLATNIAETSLTI+GIR V+D Sbjct: 462 LGSRTKQMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGF 521 Query: 293 ERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPE 351 + + P TG+T+L+T S+AS+ QRAGRAGR+ PG + K +PE Sbjct: 522 VKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRVGPGKCFRIFTKWSYLHELELMPKPE 581 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQK 410 I +++LS ++ LL G +D + +D+P + L + L +LGAL ++ G+ Sbjct: 582 ITRTNLSNTVLLLLSLGVTDLIKFPLMDKPSIPTLRKSLENLYILGALNSKGTITRLGKM 641 Query: 411 MAALGNDPRLAAMLVSAKND----DEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQ 466 M +P A +L +A I ++L E P + +G Sbjct: 642 MCEFPCEPEFAKVLYTAATHEQCQGVLEECLTIVSMLHETPSLF---IGQKRDAAASVLS 698 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL 512 + + L + +S R ++ R QL Sbjct: 699 EVESDHILYLEIFNQWRNSKFSRSWCQDHKIQFKTMLRVRNIRNQL 744 >UniRef50_B9H2M0 Predicted protein n=9 Tax=Embryophyta RepID=B9H2M0_POPTR Length = 702 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 168/651 (25%), Positives = 280/651 (43%), Gaps = 84/651 (12%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLAA 61 LPV +L ++ ++ TG+GK+T +P L +G I +PRRLA Sbjct: 52 LPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAV 111 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGLV 120 + VA R+AE ++ K G+ VGY +R ++ P T ++ +T+GVL R I DP L+ ++ Sbjct: 112 QTVASRVAEEMDVKLGEEVGYTIRFEDVTNPAATMIKFLTDGVLLREIMNDPLLTKYSVI 171 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP-------- 172 ++DE HERS+ D+ L LL +Q+ R +L+L+I SAT++ + + Sbjct: 172 MVDEAHERSISTDILLGLLKKIQR-RRPELRLIISSATIEAKSMSDFFQTSKKHRGPEDH 230 Query: 173 ---------VVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVG 223 ++ EGR F V Y+ P V+ + ++ +G +L+FL G Sbjct: 231 EFVPRKVPAILSVEGRGFNVHIHYVVEPVSDYVQATVSTVLSIHEQEPAGDILVFLTGQD 290 Query: 224 EIQRVQEQLAS------RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAET 277 +I L +I S +++ PLY +L DQ P P+G RKVV++TNIAET Sbjct: 291 DIDTAIRLLTEEAHASRKISSGLIVLPLYSSLPRADQDLVFSPTPRGKRKVVISTNIAET 350 Query: 278 SLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA 337 SLT+EG+ VVD + ++P + + L+ +S+AS QRAGRAGR+ PG L Sbjct: 351 SLTLEGVVYVVDSGFSKQQFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYT 410 Query: 338 KEQA-ERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQML 396 +E ++ PE+ +S L +++L G + W PP ++ A +L L Sbjct: 411 EEYFVNEMSSVGIPEMQRSKLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSL 470 Query: 397 GALEGE-RLS-AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSD 453 G L+ + +L+ G + A + DP ++ M++S+ + IAAIL + Sbjct: 471 GVLDDDAKLTSPVGFQAAEIPLDPMISKMILSSNQLGCSDEIITIAAILSIQSIWVSGRG 530 Query: 454 LGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA 513 + + + + LNV G S + + + A ++ + R QL Sbjct: 531 VQKELDEAKLRFAAAEGDHVTFLNVYKGFLQSGKSSQWCHKNYMNYQAMKKVIEIREQLR 590 Query: 514 ----------------------------------------NGMG--------AMLDANDA 525 NGM + + Sbjct: 591 RTALRLGIVLKSCEGDMLAVRKAVTAGFFANASRLEAFSHNGMYKTVRGSQEVYIHPSSV 650 Query: 526 LSR--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVE 574 L R +W+I L+ + + VD L + P Q T + Sbjct: 651 LFRVNPKWVIYHSLVSTDRQ---YMRNVMTVDPSWLTEAAPHFFQHQRTPD 698 >UniRef50_A5AMC2 Putative uncharacterized protein n=2 Tax=Eukaryota RepID=A5AMC2_VITVI Length = 855 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 168/623 (26%), Positives = 257/623 (41%), Gaps = 89/623 (14%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLAAR 62 LP+ +V ELL + V++ TG+GK+T L L NG + +PRR+AA Sbjct: 197 LPIYSVREELLQVIRENQVVVVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAM 256 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA+R++E + + GD VGY +R ++ GPNT+++ +T+GVL R +D EL +V++ Sbjct: 257 SVAKRVSEEMETELGDKVGYAIRFEDVTGPNTKIKYMTDGVLMRETLKDSELDKYRVVVM 316 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERSL D+ +L V R D KL++ SATL+ + P+ GR+FP Sbjct: 317 DEAHERSLNTDVLFGILKKVVAQRR-DFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFP 375 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVLL 242 V Y P + AV A + G L+S+ Sbjct: 376 VNILYSKTPCEDYVEGAVKQA---------------MTG---------CLSSQYS----- 406 Query: 243 CPLYG-ALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPR 301 LY L + Q K A G RK ++ATNIAETSLT++GI V+D ++ ++PR Sbjct: 407 --LYTPQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPR 464 Query: 302 TGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQSDLSGL 360 G+ L VS+A+ QRAGRAGR PG L + A PEI +++L + Sbjct: 465 MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNELLASPVPEIQRTNLGNV 524 Query: 361 LMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGNDPR 419 ++ L + ++D PP N+L + L +LGAL L+ G KM DP Sbjct: 525 VLLLKSLKIENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPP 584 Query: 420 LAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNV 478 LA ML+ + + I ++L P D + + L LNV Sbjct: 585 LAKMLLIGEQLECINEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNV 644 Query: 479 RGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL-------------------------- 512 + F R+ ++ R QL Sbjct: 645 YQQWKANQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAIC 704 Query: 513 -------------------ANGMGAMLDANDALSR----HEWLIAPLLLQGSASPDARIL 549 NGM L + AL ++++ L+ + + Sbjct: 705 SAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELILTAKE---YMQ 761 Query: 550 LALLVDIDELVQRCPQLVQQSDT 572 A V+ L + P D+ Sbjct: 762 CATAVEPQWLAELGPMFFSVKDS 784 >UniRef50_B5ZE33 ATP-dependent helicase HrpB n=4 Tax=Acetobacteraceae RepID=B5ZE33_GLUDA Length = 853 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 325/840 (38%), Positives = 460/840 (54%), Gaps = 47/840 (5%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI-NGKIILLEPRRLA 60 + LPVAA+LP L +L P +L AP GAGK+T +PL LL P +G+I++LEPRRLA Sbjct: 18 ADLPVAAILPALRASLAEHPSAVLVAPPGAGKTTTVPLALLDAPWRGDGRIVMLEPRRLA 77 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR AQR+A LL E G VGYR R + + TR+EVVTEG++ R + DP L GV V Sbjct: 78 ARAAAQRMAALLGEDAGGLVGYRTRLDSAISERTRIEVVTEGLMVRRLLADPTLEGVACV 137 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HERSL AD ALA LDVQ+ LR DL+L+ MSAT+D L ++ EA ++ S GR Sbjct: 138 ILDEIHERSLDADAALAFCLDVQRSLRPDLRLVAMSATMDGAALSALM-EARLIESAGRM 196 Query: 181 FPVERRYLP--LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238 FPV + P +P + +A+A A L + G +L FLPGVGEI+R Q G+ Sbjct: 197 FPVAIHHAPRDIPHVRDLPEAMARAIRAALAEHEGDILAFLPGVGEIRRTQAA---LAGA 253 Query: 239 DVLLCPLYGALSLNDQRKAILPAP-----QGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 + PLYG + +Q + + P P R+V+LAT+IAETSLT+ G+R+VVD Sbjct: 254 PAAILPLYGDMPPAEQDRVLRPGPSDGQKGNGRRVILATSIAETSLTVPGVRVVVDGGYR 313 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R R DP TGL+RL T R+S+A+ QRAGRAGR PG +L L ++ A PEIL Sbjct: 314 RSPRLDPGTGLSRLETVRISRAAAAQRAGRAGREGPGAALRLWSEATQRGMAPHDRPEIL 373 Query: 354 QSDLSGLLMELLQWGC---SDPAQMSWLDQPPVVNLL-AAKRLLQMLGALEGERLSAQGQ 409 ++L+GL ++ W + P ++ D PP A LL + + R++A+G+ Sbjct: 374 DAELTGLRLDTAAWQAAMGTAPDELPLPDAPPNGAFEAARALLLALGALDDDARITAEGE 433 Query: 410 KMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS----------------- 452 +MAALG PRLAAM+++A++ EAA AA IAA+LEE + Sbjct: 434 RMAALGAHPRLAAMMLAARDAGEAALAADIAALLEERDPLRPRPAGGRGAPAVPPADIAL 493 Query: 453 --------DLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRR 504 D A +Q + Q +RL +R G A A LLA AF DRIA+RR Sbjct: 494 RLDLIAGGDHADADRGALARIRQAAGQYRRRLGLRAGTAGQGHAASLLAAAFPDRIAQRR 553 Query: 505 GQDGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCP 564 G+ G ++L+ G GA L D L+ L L A I +A +D D L + Sbjct: 554 GEPGSFRLSGGGGARLGKTDRLADAGLLAVATL---HVRTAADIRMAAALDPDSLPETVR 610 Query: 565 QLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL 624 + + D G++ A RRL++G L ++ + +A + ++ +L + D+ + L Sbjct: 611 RRATEQVETTLDPVTGSVMARRRLRLGALVLRDRTVA-AAPGDVADLLLRQVADRLDTTL 669 Query: 625 NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIY 684 WT + Q + R+ A P + D +L A WL P +TG+ L + +LD+ Sbjct: 670 GWTPASRQFQARVALARGLPGRDALPDLSDAALAADAAEWLAPWLTGLSRLSEVAALDVL 729 Query: 685 QALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIA 744 LRG LD LD LP H +P G + + Y + P + R Q +G P +A Sbjct: 730 AMLRGRLDHATLAWLDRALPTHLDLPGGR-VPVDYTQP-VPTASARAQTFYGVRETPRLA 787 Query: 745 QGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRR 804 G+V L + LLSPA RP IT DL+ FW G++ +++++M+GRYP+H WP++PA AP R Sbjct: 788 DGQVGLQVALLSPAGRPQAITADLAGFWAGSWADMRRDMRGRYPRHDWPENPATAAPPAR 847 >UniRef50_A6GDN5 ATP-dependent helicase HrpB n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDN5_9DELT Length = 879 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 285/870 (32%), Positives = 420/870 (48%), Gaps = 75/870 (8%) Query: 2 SSLPVAAVLPELLTALDCAP---QVLLSAPTGAGKSTWLPLQ---LLAHPGINGKIILLE 55 S LP+ A+LP L L+ +++ AP GAGK+T +P+ L G II+L+ Sbjct: 7 SELPIEAILPALRERLESGGPRTNLVIEAPPGAGKTTRVPVAVLDCLDRAQDGGTIIVLQ 66 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRRLAAR AQR+A ++ E G+ VGYR+R V TR+ +TEGVL R ++ +PEL Sbjct: 67 PRRLAARLSAQRVASMVGEVVGERVGYRVRFDRAVSARTRVLFMTEGVLLRRLRSEPELP 126 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPV 173 GV VILDEFHER L DL LALL +Q D L +L+MSATLD + + L A Sbjct: 127 GVAAVILDEFHERHLDGDLLLALLTRLQGRCPADRRLHVLVMSATLDAEPIAAHLG-AER 185 Query: 174 VISEGRSFPVERRYLPLPAHQ-------RFDDAVAVATAEMLRQES--------GSLLLF 218 + SEGRSFPVE Y A + VA A E++ G +L+F Sbjct: 186 LRSEGRSFPVEVAYRAPKARAKSSRGELPLERQVAAAVRELVEDGRVGARSPEGGHVLVF 245 Query: 219 LPGVGEIQRVQEQLASRIGS-DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAET 277 LPG EI+ E A S + L L+G LS Q +A+ K++L+TN+AET Sbjct: 246 LPGAREIRASAEACAKLAASAGLELMTLHGQLSREAQDRAVSRGDLRRGKLILSTNVAET 305 Query: 278 SLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIA 337 S+TI+G+ VVD RVA FDP TGL RL +S+AS QRAGRAGR PG+ L L + Sbjct: 306 SITIDGVVAVVDSGLARVADFDPSTGLPRLSLAPISRASAAQRAGRAGRTRPGLCLRLYS 365 Query: 338 KEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQ--MSWLDQPPVVNLLAAKRLLQM 395 + ++ A PE+ + +L+GL +EL G + + WL+ PP ++ A+ LL Sbjct: 366 RANHDQRRAHDLPELQRLELAGLCLELAAAGIREVTDASLPWLEAPPEASVAVARELLLH 425 Query: 396 LGALEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP------- 447 LGA++ L+ G+ M A PRLA +LV+ A+ AA+L E P Sbjct: 426 LGAIDDAGALTDTGRAMLAYPVHPRLARLLVAGVELGVGQAVARAAAVLSERPLRPPGSR 485 Query: 448 --RMGNSDLGVAFSRNQPAWQQRSQQ-----------------LLKRLNVRGGEADSS-- 486 R+ ++D+ A + + + L +L RG + Sbjct: 486 ATRIDDADVFEAMAWLGRGGRDEGRAPRSVDPGALASVRRVAAQLSKLARRGADKQPRLA 545 Query: 487 ------LIAPLLAGAFADRIARRRGQD---GRYQLANGMGAMLDANDALSRHEWLIA--P 535 + L A DR+AR + R A G A L + + R +W++A Sbjct: 546 KAEIEARVREALLLAHPDRVARVDVDEHDQRRLVFAFGGSAQLAESSGV-RAQWVVALRS 604 Query: 536 LLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTV 595 + AR+ +A +D D L++ ++ + V +D + + L+ G+LT+ Sbjct: 605 EERREGLRRQARVSMASAIDPDWLLEHYADTIEDLERVAFDPKRERVFGESALRYGKLTI 664 Query: 596 KVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDE 655 + + + + A+L R G S +QLR R++ W +D E Sbjct: 665 ESSAMPRLDPERASAALLEAARQAGASAFCDAEALDQLRRRVVFV--VSQRGLWAGLDFE 722 Query: 656 SLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW--GMQQRLDSELPAHYTVPTGS 713 +L+ + L TG S L+ + + LD G + L P+H +P G Sbjct: 723 TLV---DRSLERACTGRTSFAELREAGLLTTIELELDALAGTPRSLARLAPSHVRLPGGR 779 Query: 714 RIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWK 773 R+ I Y D PP + R+Q+ FG A P I G VPLVL L +P + + +T DL+ FW+ Sbjct: 780 RLRITYETDRPPWVGSRLQDFFGMADGPRILDGAVPLVLHLRAPNKHAVAVTTDLAGFWR 839 Query: 774 GAYREVQKEMKGRYPKHVWPDDPANTAPTR 803 Y E ++ + RYP+H WP+DP P Sbjct: 840 EHYPEQRRRLSRRYPRHDWPEDPLTAKPPA 869 >UniRef50_UPI000186CCEB ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CCEB Length = 695 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 155/632 (24%), Positives = 269/632 (42%), Gaps = 67/632 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 LPV L+ ++ +++ TG GK+T +P + + I + +PRR+AA Sbjct: 63 GLPVYNARQRLINLIEKHEILIIIGETGCGKTTQIPQFIFEERINGSKMIGVTQPRRVAA 122 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++ R+AE +N G+TVGY +R ++ NT+++ +T+G+L R D +L +I Sbjct: 123 TTLSARVAEEMNTVLGETVGYSIRFEDLTSHNTKIKFLTDGMLLREAILDDKLMQYNFII 182 Query: 122 LDEFHERSLQADLALALLLDVQQGLR----DDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ D+ ++ + + LK++IMSAT+D D + PVV E Sbjct: 183 LDEAHERTIHTDVLFGIIKKAHKTRKERGLPILKVIIMSATMDVDHFSSYFGDVPVVYLE 242 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESG-SLLLFLPGVGEIQRVQEQLA--- 233 GR + VE + ++ +L+FL G EI+ ++ Sbjct: 243 GRQYSVEVLHAVQSQDDYLFSSLVTVFQIHQEAPPNEDILVFLTGQEEIESFAFKVKSIV 302 Query: 234 ---SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + + + PLY +L +A P P G+RK+V++TNIAETS+TI GI+ V+D Sbjct: 303 KDLENMTPPLKVLPLYSSLPSLQLAEAFKPTPHGLRKIVISTNIAETSVTIPGIKYVIDS 362 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 + + F+P TGL L + +SQA QR+GRAGR G + K++ ++ S+P Sbjct: 363 GKVKAKMFNPITGLDMLQVRTISQAQAWQRSGRAGRDSSGHCYRIFTKDEFDKFDKNSQP 422 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG---ERLSAQ 407 EIL+ +L+ + ++LL G + ++D+PP +L +A L++LGA++ +L+ Sbjct: 423 EILRCNLASVSLQLLTLGI-NILNFDFMDKPPKESLKSALTELKLLGAIDCVEKPQLTKL 481 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNS-DLGVAFSRNQPAWQ 466 G++MA DPR + +L+SA + I A+L + +S + Sbjct: 482 GKQMAQFPIDPRYSKILLSAIDYGCLDEIITIIALLSGESVLIHSLTKRDEAKEAHKKFL 541 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANG----------- 515 S + LNV S F + R QL Sbjct: 542 SSSGDHITLLNVFRNFKKMSQQKQWCHENFLHFRNLVYASNVRKQLVEICKRNDITITSC 601 Query: 516 ----------------------------------MGAMLDANDALSR--HEWLIAPLLLQ 539 + L ++ ++ Sbjct: 602 NSNIDQIRKCLVTGLFMNVAELQLDKKYMMLSTRQMVSIHPTSVLGGTLPHCVLFSEVVH 661 Query: 540 GSASPDARILLALLVDIDELVQRCPQLVQQSD 571 + I ++D D L + P+ +Q Sbjct: 662 TTK---CYIRQLTVIDPDWLTETMPEYFRQHR 690 >UniRef50_D2B686 ATP-dependent helicase HrpB n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B686_STRRD Length = 880 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 310/896 (34%), Positives = 433/896 (48%), Gaps = 111/896 (12%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQL--LAHPGINGKIILLEPRRL 59 S LPV VLPELL ALD +L+AP G GK+T +PL L L ++I+ EPRR+ Sbjct: 6 SGLPVRHVLPELLAALDERGVAVLTAPPGTGKTTLVPLALAGLLDGSAPKRVIVAEPRRM 65 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 A R A+R+A LL + G VG+ +R + GP T +EVVT GVL + +QRD EL GV Sbjct: 66 AVRAAARRMAWLLESEVGAEVGFTVRGERRAGPETVVEVVTTGVLLQRLQRDAELDGVDA 125 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP---------- 169 V+LDE HER L AD ALA LLDV+ LR DL+L+ SAT D ++L Sbjct: 126 VLLDECHERHLDADTALAFLLDVRATLRPDLRLIATSATADAAPWARLLGSGAAGDHPAT 185 Query: 170 -----EAPVVISEGRSFPVERRYLPLP----------AHQRFDDAVAVATAEMLRQESGS 214 +AP+V + G PV + P F VA L + G Sbjct: 186 AVPLPDAPIVHASGAMHPVTPVWAPPARPVTPPRGLRVDPAFLSHVADVVRRALGEHGGD 245 Query: 215 LLLFLPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNI 274 +L FLPGVGEI RV L V + ++G Q + +P R+VVLAT++ Sbjct: 246 VLCFLPGVGEIGRVAAMLHG-----VDVLQVHGQAPARVQDAVL--SPGENRRVVLATSV 298 Query: 275 AETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLH 334 AE+SLT+ G+R+VVD R R D GL L T R S+AS QRAGRAGR PG+ Sbjct: 299 AESSLTVPGVRIVVDSGLAREPRTDHARGLGSLTTVRASKASAVQRAGRAGREAPGVVYR 358 Query: 335 LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQ 394 ++ + +R ++PEI +DL+G ++ WG ++ LD PP + AA+R L Sbjct: 359 CWSQAEHDRLPEHAQPEIALADLTGFALQAACWGDPAATGLALLDPPPPAAMDAARRTLH 418 Query: 395 MLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP-PRMGNSD 453 LGAL+ R++A+G++MA G PRLA L+ D AA++ A+L E PR D Sbjct: 419 DLGALD-GRVTARGRRMAGAGVHPRLARALI-----DVGPRAAEVVALLSEQLPRDAGDD 472 Query: 454 LGVAFSRNQP---AWQQRSQQLLKRLNVRG---------GEADSSLIAPLLAGAFADRIA 501 L + + + R ++ +RL D R Sbjct: 473 LVAVWRSARRGDDGFSARWRRETRRLAQAVPREGRTPPPAGQDGRPRPAPAPAGQGGRPR 532 Query: 502 RRRGQDGRYQLAN------GMGAMLDAND--------ALSRHE---------WLIA---- 534 GR A G + D AL+ E +L+A Sbjct: 533 PAPAPGGRDGSAGVSPPPAGRDRGPEPGDDAVAGLVVALAYPERVARRRGGSYLMASGTA 592 Query: 535 -----------------PLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWD- 576 + + + S AR+ A+++D + L + V W Sbjct: 593 AELPQGSRLASAEWLAVAVADRPAGSASARVRQAVVIDEEIARLAAAPLYGSGEEVVWRV 652 Query: 577 ---DAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQL 633 + +G + A R ++G + + L + A+L G+R +GL+VL WT EA L Sbjct: 653 PPGERRGDVSARRVERLGAIELSSARLRDAD---VRPAVLEGLRTEGLAVLRWTPEAVAL 709 Query: 634 RLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDW 693 R RL + L + WPA DD++L+ A + WL P ++ V L+ LD+ AL L+ W Sbjct: 710 RERLAFCHRALGD-PWPATDDDALIGAADLWLEPELSRVRRRSDLERLDVTSALHRLVPW 768 Query: 694 GMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLE 753 RL P VP+GSRI I Y D P LA ++QE+FG P +A VPLV+ Sbjct: 769 S--ARLADTAPERIEVPSGSRIRIDYSGDQ-PVLAAKLQELFGWDEAPRVAG--VPLVIH 823 Query: 754 LLSPAQRPLQITRDLSDFWKG-AYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKY 808 LLSPA RP +T DL+ FW+G YR V+ E++GRYPKH WP+DP + TRRT Sbjct: 824 LLSPAGRPAAVTADLASFWRGEGYRSVRAELRGRYPKHPWPEDPLSAVATRRTNPR 879 >UniRef50_B2GHK7 ATP-dependent helicase n=7 Tax=Actinomycetales RepID=B2GHK7_KOCRD Length = 924 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 240/792 (30%), Positives = 359/792 (45%), Gaps = 64/792 (8%) Query: 73 NEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQA 132 +PG VG+ +R + TR+E VT G+L R + RDPEL+G V+LDE HER +++ Sbjct: 134 GTEPGGVVGWSVRGERKTSKATRVEFVTPGILLRRLLRDPELAGAAAVVLDEVHERGVES 193 Query: 133 DLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE---APVVISEGRSFPVERRYLP 189 DL + +L +++Q LR+DL L+ MSAT++ +R +L APVV P+ ++ P Sbjct: 194 DLLVGMLAELRQ-LREDLVLVAMSATVEAERFAGLLGGEAPAPVVDCPSALHPLAVQWAP 252 Query: 190 LPA--------HQRFDDAVAVATAEMLR----QESGSLLLFLPGVGEIQRVQEQLASRIG 237 P A R S L+FLPG E+ V +L R Sbjct: 253 GPQRLDERGVTPSFLSHMARTAADAHRRALAQDPSVDALVFLPGAREVSHVAAEL--RGL 310 Query: 238 SDVLLCPLYGALSLNDQRKAILPAPQGMR-KVVLATNIAETSLTIEGIRLVVDCAQERVA 296 +D + L+G L +Q +A+ G R ++V+ T++AE+SLT+ G+RLVVD R Sbjct: 311 TDAEVLELHGQLPPREQDRAVAGRGPGERPRIVVTTSLAESSLTVNGVRLVVDSGLARQP 370 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R D G++ L+T S+AS QRAGRA R PG + A + PE+ +D Sbjct: 371 RRDAGRGISGLVTVSASKASAEQRAGRAARQGPGTVVRCYDDAAWGAMPAHTVPEVRTAD 430 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQGQKMAALG 415 L+ + L WG M+ D P A L LGA+ E R + G+ + +L Sbjct: 431 LTAACLALAVWGSPGGEGMALPDPLPPRARADADAELVRLGAVAEDGRATDLGRLLVSLP 490 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQP------AWQQRS 469 +PR L+ + A TAA++ A + + R+ +D+ + +R Sbjct: 491 VEPRWGRALLDGADLVGARTAAEVIASVSDGARVPAADIPALVRGLRSSRGGESTRWRRE 550 Query: 470 QQLLKRLNVRGGEADSSL----------------------IAPLLAGAFADRIARR-RGQ 506 Q L+R+ + ++ A + +ARR Sbjct: 551 VQRLERMTAHPAAGGPADGSGEDTDAPPRGPEPDVPAEVREGVVVGLARPEWMARRADAH 610 Query: 507 DGRYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDAR----ILLALLVDIDELVQR 562 ++ LA+G A L+A L HEWL L + + A I A +D+ Sbjct: 611 GDQWLLASGTRAGLEAGSPLRHHEWLAVAELTRAAGRAAAGTGAVIRAAAPLDLQHAQLV 670 Query: 563 CPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLS 622 L + + G + +G + + P+ + D A+ + +GL Sbjct: 671 AGSLARTETRASFS--NGRVSTREVRAVGAIELSATPV-RADPDTAVPAIRAALAAEGLD 727 Query: 623 VLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLD 682 +L W A L + WPAVDD +LLA E WL P + V L+S+ Sbjct: 728 LLPWDDAARG-LRARLALLRRHLGQPWPAVDDAALLARAEEWLGPELRDVARGGSLRSVR 786 Query: 683 IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRY-------HEDNPPALAVRMQEMF 735 + ALR LL W RLD P VP+G+ I Y PP +AV++QE F Sbjct: 787 VADALRRLLPWPDAARLDELAPRRLDVPSGNTARIAYPEVFDEDDPARPPVVAVKLQECF 846 Query: 736 GEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDD 795 G A P +A GRVP+ LLSP + L IT DL+ FW G Y +V+ EM+GRYPKH WP+D Sbjct: 847 GWAETPRVADGRVPVQFHLLSPGKATLAITEDLASFWSGPYAQVRAEMRGRYPKHPWPED 906 Query: 796 PANTAPTRRTKK 807 P N T +T + Sbjct: 907 PWNAVATAKTSR 918 >UniRef50_C0QAN7 HrpA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAN7_DESAH Length = 1333 Score = 647 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 192/827 (23%), Positives = 335/827 (40%), Gaps = 110/827 (13%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRL 59 + LP+ E++ AL V++S TG+GK+T +P +A G GKI +PRR+ Sbjct: 74 LPELPITGKKDEIIHALKFHRVVIISGETGSGKTTQIPKFCMAAGRGAAGKIGCTQPRRI 133 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA VA R+AE L + PG VG+++R + ++ ++++T+G+L Q DP L+ Sbjct: 134 AAITVAARIAEELGQLPGGVVGHKIRFDDRSSKDSIIKIMTDGILLAETQHDPFLNEYDT 193 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 +I+DE HERSL D L +L ++ + R DL L++ SAT+D ++ + APV+ GR Sbjct: 194 IIVDEAHERSLNIDFTLGILRNLVRK-RPDLTLVVTSATIDTEKFSKAFDNAPVIEVSGR 252 Query: 180 SFPVERRYLP-------LPAHQRFDDAVAVATAEMLRQES-GSLLLFLPGVGEIQRVQEQ 231 FPVE RY P Q + +A A A E+ RQ G +L+F+P +I+ E Sbjct: 253 MFPVELRYAPIDDPDNDDLDDQGYVEAAAGAVDEIQRQSRTGDILVFMPTERDIEETIEL 312 Query: 232 LASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCA 291 + R L+ PL+ LS DQ + RK++++TN+AETSLTI GI+ VVD Sbjct: 313 IQGRKYPGTLVLPLFARLSARDQARVFSR--GVGRKIIVSTNVAETSLTIPGIKYVVDSG 370 Query: 292 QERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPE 351 R+ + PRT T L +S++S QR GR GR+ GI + L +++ E + PE Sbjct: 371 LARILHYSPRTRTTALPVSPISRSSANQRMGRCGRVANGICIRLFSEDAFESRPLFTSPE 430 Query: 352 ILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER-------- 403 IL+S+L+ +++ ++ + A ++D P ++ L LGA++ R Sbjct: 431 ILRSNLAEVILRMISLKLGNVAAFPFIDPPAPKSIKDGFDTLVELGAIQQRRGKNNQRGG 490 Query: 404 --LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSR 460 L+ +G+ MA + DP+L+ +L+ A ++ A I + L PR D + Sbjct: 491 YALTTRGRVMAKIPVDPKLSRILLEADHNGCLDEAVVIVSALSIADPRQRPKDKVQHADQ 550 Query: 461 NQPAWQQRSQQLLKRLNVRGGEADSSLI-------APLLAGAFADRIARRRGQDGRYQLA 513 A++ S + LN+ + F R D ++Q+ Sbjct: 551 MHAAFKDPSSDFVTLLNIWKAYVAAEHSLKTRNQVRRFCKDNFLSFRRFREWGDIQHQIR 610 Query: 514 N----------------------GMGAMLDANDAL---SRHEWLIAPLLLQGSASPD--- 545 + G+ A + H+ ++A L + + Sbjct: 611 SVLKEHGITRSNTDSTVTKVGTKGLKAKAFEIGGPFYTALHKSILAGYLANIAQKKEKNN 670 Query: 546 --ARILLALLVDI---------DELVQRCPQLVQQSD---------TVEWDDAQGT---- 581 A A + + + V+ + +W + G Sbjct: 671 YTATKGRAATIFPGSGLYNSGGSWI--VAAEFVETTKLFARGVAIIDPQWLEETGQELLT 728 Query: 582 --------------LKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKGLSV- 623 + A ++ + L + + K + E + + + Sbjct: 729 RTWSTPRWEKQRGEVVATEQISLFGLVIVPERTVAYGKINPREAGEIFIRQALVEQEVAR 788 Query: 624 -LNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLD 682 L + + L L + D V ++ + + L + + + Sbjct: 789 PLGFMVHNQALIDELRQVEEKTRRRDIV-VTEDDMFLFYQQRLDQDFSNLATFTRFLKEQ 847 Query: 683 IYQALRGLLDWGMQQRL---DSE--LPAHYTVPTGSRIAIRYHEDNP 724 + +QQR D P + GS + Y Sbjct: 848 GSDLFLRMTLEDLQQRSPDRDELLKFPDSLEMGGGS-FRLEYGFQPG 893 >UniRef50_C8NU49 ATP-dependent helicase HrpA n=8 Tax=Corynebacterium RepID=C8NU49_9CORY Length = 1313 Score = 647 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 188/818 (22%), Positives = 333/818 (40%), Gaps = 112/818 (13%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 LPV+A ++ + V+++ TG+GK+T +P LL G G I +PRR+AA Sbjct: 72 QLPVSARREDIKNLIRDNQVVVIAGETGSGKTTQIPKMLLELGRGRRGLIGHTQPRRIAA 131 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA+R+A+ L + G +VGY +R + V T ++++T+G+L +QRD L+ +I Sbjct: 132 RTVAERIADELGQDIGRSVGYAIRFDDRVSATTAVKLMTDGILLAEMQRDRYLNAYDTII 191 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPE-----APVVIS 176 +DE HERSL D L L + R DLK++I SAT+D + + + AP++ Sbjct: 192 IDEAHERSLNIDFLLGYLKRLLP-YRPDLKIIITSATIDPESFAEHFADSDGNPAPIIEV 250 Query: 177 EGRSFPVERRYLP------------LPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGE 224 GR++PVE RY P D + A E++ + G +L F + Sbjct: 251 SGRTYPVEIRYRPLETEVPTKDGGTKVVDTDMLDGLIEALKELMAEGDGDILCFFASERD 310 Query: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 I+ E + + V + PL+G LS +Q + +P R++VLATNIAETSLT+ GI Sbjct: 311 IRDAMELIEKQRWRGVEVTPLFGRLSNAEQHRVF--SPHSGRRIVLATNIAETSLTVPGI 368 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 VVD R++R+ RT + RL + +SQAS QR+GR+GR+ GI++ L +++ Sbjct: 369 HYVVDTGLARISRYSTRTKVQRLPIEEISQASANQRSGRSGRIADGIAIRLYSEDNFHAR 428 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER- 403 ++PEIL+++L+ +++++ D A+ ++ P + LL LGA+ + Sbjct: 429 PEFTDPEILRTNLASVILQMTNLRLGDIAEFPFVQPPDKKAVRDGLMLLHELGAITDKED 488 Query: 404 -----LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAA-ILEEPPRMGNSDLGVA 457 L+ G+ +A + DPR+A MLV A I A + + R + Sbjct: 489 QDMPVLTGIGRDIARIPVDPRMARMLVEAHRLGVLDDVTVIVASMTIQDVRERPLEFQAQ 548 Query: 458 FSRNQPAWQQRSQQLLKRLNVRGGEADS------SLIAPLLAGAFADRIARRRGQDGRYQ 511 + ++ ++ L LN+ DS + + + + R D Q Sbjct: 549 ADQAHARFKDKTSDFLAALNLWDYLKDSRNELSGNAFRKRMKKEYLHYMRIREWFDLVRQ 608 Query: 512 LA--------------------------------------NGMGAM-------------- 519 L + +GA Sbjct: 609 LREAERQLGWARTATATDDHDDSRDRDPKSIHQALLTGLLSNIGARDGTSKEFKGARGTR 668 Query: 520 --LDANDALSR--HEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQS-DTVE 574 + L++ E+++A L++ S +D + + L++ + Sbjct: 669 FMIFPGSVLAKKPPEFVMAAELVETSRLWA---RDVAAIDPAWVEKVAGGLLKHNYSEPI 725 Query: 575 WDDAQGTLKAWRRLQIGQLTV---KVQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAE 629 W + ++ + +TV ++ P + D + G + + Sbjct: 726 WSIKRAAPMVHQKSMLYGVTVVADRLVPYHRVDMDAARTMFIRHALIDGEWNAHHAFLKH 785 Query: 630 AEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGL--KSLDIYQAL 687 +L + + VD+E+L + L ++ K A Sbjct: 786 NAKLLEEAAKVEEKVRRRGLV-VDEEALFDFYDERLPDNIGTGRHFDAWWKKKKHEDAAF 844 Query: 688 R-----GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH 720 L+D + P + +I Y Sbjct: 845 LDFDPSALIDDSDADTSEDSFPDKI-----RQGSIDYD 877 >UniRef50_A2DQS5 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2DQS5_TRIVA Length = 785 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 165/628 (26%), Positives = 276/628 (43%), Gaps = 66/628 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAAR 62 SLPV LL AL +++ TG+GKST +P LL N ++ +PRR+AA Sbjct: 149 SLPVFKYKKTLLDALVSNHVLVVVGDTGSGKSTQIPQYLLE-RSPNESVVCTQPRRVAAM 207 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 +VA R+AE + + G VGY +R + T++ +T+G L R DP LS V++ Sbjct: 208 SVAARVAEERHVELGFEVGYAVRFDDKTSEFTKIRYMTDGTLLREFLVDPLLSKYTTVMI 267 Query: 123 DEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFP 182 DE HERS+ D+ L+LL D+ Q +R + +L++ SATLD + + P++ GR F Sbjct: 268 DEAHERSISTDILLSLLKDLMQ-VRPEFRLVVASATLDAASMSDFYDKCPILTVPGRRFT 326 Query: 183 VERRYLPLPAHQRFDDAVAVATAEMLR---QESGSLLLFLPGVGEIQR----VQEQLASR 235 V+ Y P A+ ++ +L+FL G EI R + E ++S+ Sbjct: 327 VDINYTNTPVVDYEIAAIDTVVKIHTSTEIEQPCDILVFLTGQDEIDRSVAKINELISSK 386 Query: 236 IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + +++ PLY AL Q PAP+G RKV+ +TNIAETSLTI+ ++ V+DC + Sbjct: 387 VINNIEALPLYSALPSERQSLIFKPAPRGTRKVIFSTNIAETSLTIDTVKYVIDCGLVKE 446 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQ-SEPEILQ 354 +D + G + L +S++S QRAGRAGR GI L + E Q ++PEI + Sbjct: 447 MSYDSKNGCSSLDRVPISKSSADQRAGRAGRTSHGICYRLYTESSFEFEHEQMTKPEIKR 506 Query: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GERLSAQGQKMAA 413 D + L+ L+ G +D +++D P N+++A L L AL+ L+ G++M+ Sbjct: 507 CDFAPTLLLLISMGITDIVNFNFVDSPATNNIISAYEQLGALQALDNDGNLTELGEQMSQ 566 Query: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRSQQ 471 L P A ++ + + + I ++LE + + + + Sbjct: 567 LPVSPMCARAILKSFELGCSESVITICSVLESGSPLFYFSQNESKDAIAHIKQFYDEEGD 626 Query: 472 LLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLA------------------ 513 + LNV D+ G ++ + QL+ Sbjct: 627 HIMCLNVYNQWVDAEYSQQWCIGNKVQHRTLLNAKNIKNQLSDICQILNFVEDESKKNET 686 Query: 514 ----------------------------NGMG-AMLDANDALSR---HEWLIAPLLLQGS 541 G G + + L + ++LI L S Sbjct: 687 SENISHAFCMGFFLNCAQLMSNGYYQTLRGQGEVKIHPSSCLLQYTAQQYLIFYEL---S 743 Query: 542 ASPDARILLALLVDIDELVQRCPQLVQQ 569 + D + + + L + P+ ++ Sbjct: 744 KTTDIFMRTLMRTKPEWLREIAPRYFEK 771 >UniRef50_Q0UY60 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0UY60_PHANO Length = 857 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 174/658 (26%), Positives = 274/658 (41%), Gaps = 93/658 (14%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLP+ E + A+ ++L TG+GK+T L L +I +PRR+A Sbjct: 183 SLPIYKYREEFIQAVSEHQIIVLVGATGSGKTTQLTQYLNESGYAKNSLRIGCTQPRRVA 242 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A + K G VGY +R ++ + +T++E +T+G+ R+ DP LS ++ Sbjct: 243 AISVANRVAAEVGTKIGRRVGYSVRFESAMSDDTQIEYMTDGLALRLCLTDPTLSDYSVM 302 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HER+L D+ ++LL ++ R + +L+I SATL + +AP++ GR+ Sbjct: 303 ILDEAHERTLATDILMSLLKEICLA-RPEFRLIIASATLAAQKFSTYFHDAPIMNIPGRT 361 Query: 181 FPVERRYLPLPAHQRFDDAVAVATAEM------LRQESGSLLLFLPGVGEIQRVQEQLAS 234 FP+ + + P AV + G +L+F G EI + + Sbjct: 362 FPITKAHSTQPEANYLSAAVTTVFQIHLGSNGSMNDVKGDILIFFTGEEEILAAADYIND 421 Query: 235 ------RIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVV 288 +++ P+YGAL Q+ PAP G RKVVLATNIAETSLTI+GI V+ Sbjct: 422 TQKKLGSRSPPLIVAPVYGALPSEAQQLIFNPAPPGSRKVVLATNIAETSLTIDGISYVI 481 Query: 289 DCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK-EQAERAAAQ 347 DC E+ F+ T + L+T S+AS QRAGRAGR PG++ L K Sbjct: 482 DCGLEKQNSFNAATNMASLVTVPCSRASAEQRAGRAGRTGPGMAFRLYTKYAFYHELPES 541 Query: 348 SEPEILQSDLSGLLMELLQWGCSDPAQMSWL------------------DQPPVVNLLAA 389 S PEIL+ L G ++ L G D ++ D PPV L A+ Sbjct: 542 SLPEILRISLDGPVLTLKAMGIHDVLHFDFMVRISYPEVQIGTLANHPQDAPPVEALAAS 601 Query: 390 KRLLQMLGALE-GERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP- 447 L LG L+ ++ G++ + L DPRLA +L++A + + A+++E Sbjct: 602 LETLYALGYLDSNGAVTKLGRRASELPLDPRLAKVLLTADSLGCVDEIVTLVAMVQEAGT 661 Query: 448 -RMGNSDLGVAFSRNQPAWQQR----SQQLLKRLNVRGGEADSSLIAPLLAGAFADRIAR 502 D VA + + L+ LNV ++ F Sbjct: 662 LFFAPKDKKVAAEHAKARFTSSVAGTGGDLIAFLNVWNEFVENDYSVTWCRDNFVQYRCL 721 Query: 503 RRGQDGRYQLA-----------------------------------------------NG 515 R +D R QL G Sbjct: 722 NRVRDVRDQLVKLCERVEIFESSCGVHEYVKILKAFVSGYFANVARLNRDGQTYRTLKQG 781 Query: 516 MGAMLDANDALS--RHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSD 571 + + + L R + ++ L+ S ++ L + P +Q + Sbjct: 782 LSVNIHPSSCLRDVRPKLIVFAELVLTSKE---FARTCAPIEPAWLTEMAPHYHKQKE 836 >UniRef50_A3M3Z2 ATP-dependent helicase n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M3Z2_ACIBT Length = 939 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 186/805 (23%), Positives = 337/805 (41%), Gaps = 104/805 (12%) Query: 26 SAPTGAGKSTWLPLQ-LLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRM 84 + TG+GK+T LP +LA G+ G I +PRRLAAR+V+QR+AE + EK G+++G+++ Sbjct: 2 AGETGSGKTTQLPQIAMLAGRGLTGMIGHTQPRRLAARSVSQRIAEEVGEKLGESIGFKI 61 Query: 85 RAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQ 144 R ++ + ++T+G+L + D LS +I+DE HERSL D + L + Sbjct: 62 RFNEQGSQDSIVRLMTDGILLAELGNDRFLSKYDTIIIDEAHERSLNIDFIMGYLKQLLP 121 Query: 145 GLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQ---------- 194 R DLK+++ SATLD +R AP+ EGRS+PVE RY P+ Sbjct: 122 K-RPDLKVIVTSATLDVNRFSNYFNNAPIFEVEGRSYPVEVRYRPISEMNIGGSDDDEFD 180 Query: 195 ----RFDDAVAVATAE--MLRQESG-----SLLLFLPGVGEIQRVQEQLASRIGSDVLLC 243 AV A E +E G +L+F EI+ +QE L + Sbjct: 181 DFEENLPRAVVQAVEECFADAEEKGHPEHADILIFSSTEQEIRELQETLQKYGPRHTEIL 240 Query: 244 PLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTG 303 PLY L++++Q+K P+ +G R++++ATN+AET+LT+ IR V+D R++R++ R+ Sbjct: 241 PLYARLAVSEQQKIFSPSGKG-RRIIIATNVAETALTVPNIRYVIDSGFARISRYNYRSR 299 Query: 304 LTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLME 363 + RL + +SQA+ QR GR GR+ PG+ + L ++E +EPEI +++L+ ++++ Sbjct: 300 VQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFLSRPEFTEPEIKRTNLASVILQ 359 Query: 364 LLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER--LSAQGQKMAALGNDPRLA 421 + G + +++ P + ++LL LGAL ++ L+ GQ MA + DPRLA Sbjct: 360 MQSLGLGELENFDFIEPPDFRLVNDGRKLLIELGALNEKKNELTKVGQMMARMPIDPRLA 419 Query: 422 AMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVR- 479 M+V + + + L + R +D + + +++ L L + Sbjct: 420 RMIVGGAHFGVLKEILVVVSALAVQDARERPADKQMQADQKHALFKEADSDFLFYLKLWD 479 Query: 480 ------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQL--------------------- 512 + F + R + QL Sbjct: 480 TLNPKGEAGMSENKRRQFAKQHFLSWLRLREWKQTHQQLVELAEGLKLSFNEKPANYENL 539 Query: 513 ------------------------ANGMGAMLDANDALSR--HEWLIAPLLLQGSASPDA 546 A + L + W++A +++ S Sbjct: 540 HRALLTGLLSFIANKTDERNTFMAVRQQKAKVFPASTLHKTNTAWVMAFEMVETSQ---V 596 Query: 547 RILLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQPL---AK 602 + +D + ++ L++ W G + A+ ++ + L ++ + L K Sbjct: 597 YLRTLAKIDPEWILLAARDLLKYHYFEPHWSKKAGIVNAYAQISLFGLIIEPKRLVNFEK 656 Query: 603 PSEDELHQAMLNGIRDKG--LSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAA 660 + H+ L G +V + + L D VD+E++ Sbjct: 657 VDQPAAHEIFLRDALTTGNLGTVPPFLKHNLLKLEEVERVEDKLRRRDLV-VDEETIYQF 715 Query: 661 LETWLLPHMTGVHSLRGLK-----SLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGS-R 714 + + + S + Y + W + + P H G R Sbjct: 716 YASKIPEEIASRRSFEDWRATVEAKNPRYLYVEDDALWLNDRPTTQQFPDHL--HNGQLR 773 Query: 715 IAIRY-----HEDNPPALAVRMQEM 734 +A Y H+++ + + +Q + Sbjct: 774 LATTYRFDPSHDEDGATVQIPVQAL 798 >UniRef50_Q3SHC5 ATP-dependent helicase HrpA n=3 Tax=Betaproteobacteria RepID=Q3SHC5_THIDA Length = 1275 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 206/837 (24%), Positives = 336/837 (40%), Gaps = 112/837 (13%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLA 60 LPVAA ++L AL+ ++L TG+GK+T +P L GK I +PRR+A Sbjct: 23 PDLPVAARRDDILAALERHRVLILCGETGSGKTTQIPKMCLEAGIPPGKLIGCTQPRRIA 82 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR+VA R+A+ L + G VGY++R + V P+T ++V+T+G+L Q DP LS + Sbjct: 83 ARSVAARIAQELGSELGGLVGYKVRFSDKVRPDTAIKVMTDGILLAESQGDPLLSRYDTI 142 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HERSL D L L + R DL++L+ SAT+D +R + +APV+ GR Sbjct: 143 ILDEAHERSLNIDFLLGYLKTLLDK-RADLRVLVTSATIDAERFSKHFDDAPVIEVSGRL 201 Query: 181 FPVERRYLPLPAHQ----------------------RFDDAVAVATAEMLRQESGSLLLF 218 +PVE R+ P+ A+ AT E+ R G +L+F Sbjct: 202 YPVEIRWRPIARDDEAGAPGNKREAEKPGRTYKDGPDQIAAILDATDELARLGPGDILVF 261 Query: 219 LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETS 278 LPG EI+ E L + PL+ LS+ +Q P +R++VLATN+AETS Sbjct: 262 LPGEREIRDTAEALRKHHPPGTEILPLFSRLSVAEQDAIFKPTSA-LRRIVLATNVAETS 320 Query: 279 LTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAK 338 LT+ GIR V+D RV R+ R + +L+ ++VSQAS QRAGR GR+ G+ + L + Sbjct: 321 LTVPGIRYVIDPGTARVKRYSARNKVEQLLIEKVSQASANQRAGRCGRVADGVCIRLYDE 380 Query: 339 EQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGA 398 ++PE+L+S L+G+++ + G D ++D P + +LL L A Sbjct: 381 ADFSNRPRFTDPELLRSSLAGVILRMKSLGLGDVVGFPFIDPPSSRLVTDGYQLLGELHA 440 Query: 399 LEG-ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGV 456 L+ +L+ G+++A L DPR+A ML++A+ IA+ L + PR + Sbjct: 441 LDEQGQLTKIGRQLAKLPLDPRIARMLLAAEQQRCVREILIIASALSVQDPRDRPMERAQ 500 Query: 457 AFSRNQPAWQQRSQQLLKRLNVRGGEAD-------SSLIAPLLAGAFADRIARRRGQDGR 509 A +Q + L + + + + LL F R +D Sbjct: 501 AADEKHKLFQDERSDFMGWLRLWRWYEEQVQHKKTNRQLQTLLQDHFLSPRRMREWRDIH 560 Query: 510 YQL-ANGMGAMLDANDALSRHEWLIAPLLLQ----------------------------- 539 QL A L N+ + ++ + LL Sbjct: 561 GQLHAQVAELGLRENEKDAGYDAIHQALLSGLLGNIGFKSDDGRAKTGAGRPKPGEGNYL 620 Query: 540 GSASPDARILLALLVD---IDELVQR-------CPQLVQQSDTVEWDDAQGT-------- 581 G+ I + ++ EW + G Sbjct: 621 GARGIKLSIHPGSALAKKGPKWIMAAELTDTGRLLARTVAEVRPEWIEGAGRHLLTRMYI 680 Query: 582 ----------LKAWRRLQIGQLTVKVQP---LAKPSEDELHQAMLNGIRDKG--LSVLNW 626 + AW R+ + +T+ + + + + G G + W Sbjct: 681 EPHWEKDGARVVAWERVSLYGITLVPRRKIHYGPIDPELARELFIRGALVAGDYDTRAPW 740 Query: 627 TAEAEQLRLRLLCAAKWLPEYD-WPAVDDESLLAALETWLLPHMTGVHSLRGLK----SL 681 A L + + W +D+ + + + + + + + Sbjct: 741 FAHNRALIQEIEDLEHKARKSGVW--LDEARIYGIFDARVPAGIHNGVAFEKWRAEAEAA 798 Query: 682 DIYQALRGLLD--WGMQQRLDSELPAHYTVPTGSRIAIRYHEDN-----PPALAVRM 731 D D + P V G A++Y + L V + Sbjct: 799 DPRTLFLRREDILGEGLGADHTLFPESMQV-DGVMCALKYRFEPGHPLDGVTLRVPL 854 >UniRef50_B2UQA6 ATP-dependent helicase HrpA n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UQA6_AKKM8 Length = 1231 Score = 644 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 194/753 (25%), Positives = 317/753 (42%), Gaps = 81/753 (10%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 LP++ ++L A+ +++ TG+GK+T LP + G++ +PRRLA Sbjct: 6 PDLPISRRRNDILAAMREHQVIVVVGETGSGKTTQLPKMAMELAGEARGRVGCTQPRRLA 65 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V++R+AE LN G VGY++R + G +TRL+ +T+G+L Q DP+L + Sbjct: 66 AASVSRRVAEELNCDLGGLVGYQVRFEEKAGLDTRLKFMTDGILLAETQHDPDLRQYHTL 125 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ILDE HERSL D L L + RD ++ SATLD + AP++ EGR+ Sbjct: 126 ILDEAHERSLNIDFLLGYLRLLLGRRRDLRLVI-SSATLDAGGFSEFFGGAPIIQVEGRT 184 Query: 181 FPVERRYLPL-PAHQRFDDAVAVATAEMLR-QESGSLLLFLPGVGEIQRVQEQLASRIGS 238 +PV+ YLP + VA A + + G +L+FLPG EI+ V E+L R Sbjct: 185 YPVDFHYLPPLHDDEELPAHVARAVDWLDTLDDRGDVLVFLPGEREIREVAEKLEGRNLR 244 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 + + PL+ L L +Q++ P QG R++VLATN+AETSLTI GI V+D RV+R+ Sbjct: 245 NTRILPLFARLGLANQQRIFHP-EQGYRRIVLATNVAETSLTIPGIIYVIDSGLARVSRY 303 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLS 358 P + RL + VS+AS QRAGR GR+ G+ + L +++ E ++PEI +S L+ Sbjct: 304 SPARQVQRLQIEPVSKASARQRAGRCGRVCEGVCIRLYSEKDWEDRPDFTDPEIRRSALA 363 Query: 359 GLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-ERLSAQGQKMAALGND 417 G L+ + G + + D P + R L+ +GAL+ +L+ G+K+A L D Sbjct: 364 GALLRMKDLGLPEMPEFPLPDPPSSKLVTEGYRTLREIGALDKARQLTPVGRKLARLPID 423 Query: 418 PRLAAMLVSAKNDDEAATAAKIAAILEE-PPRMGNSDLGVAFSRNQPAWQQRSQQLLKRL 476 PRLA ML+ A+++ I A L PR +D + W++ L L Sbjct: 424 PRLARMLLEAQHEQALPEMLVIVAGLGIMDPRERPADAAQKADQAHAQWKEEDSDFLSLL 483 Query: 477 NVRGG--------EADSSLIAPLLAGAFAD------------------------------ 498 + + + F + Sbjct: 484 KLWKAAWQFREGRRWRKNQLRKWCGKNFLNFNRMMEWFNLWEDLSRLVRETLKCRISPLE 543 Query: 499 ----------------------RIARRRGQDGRYQLANGMGAMLDANDAL----SRHEWL 532 + + Y+ A G + L R EW+ Sbjct: 544 EETERQASFAMIHRSILAGVPRQFGLWDADNREYRGAGGRSFGIFPGSGLFRRKKRSEWV 603 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT-VEWDDAQGTLKAWRRLQIG 591 + L+ + + A +++ + P L + + WD QG + A R+ G Sbjct: 604 MGVELVDTTRLW---MRRASILEPGWVELVAPHLCESHYSGARWDREQGAVYAVERVVCG 660 Query: 592 QLTV---KVQPLAKPSEDELHQAML-NGIRDKGLSVLNWT-AEAEQLRLRLLCAAKWLPE 646 L + + + + + M+ G+ G E LR + + Sbjct: 661 GLRIIDNRRVHYGRINPAHAREIMIREGLLGGGFRTKPACIRHLETLREEVRQI-ELKLR 719 Query: 647 YDWPAVDDESLLAALETWLLPHMTGVHSLRGLK 679 +E + + P + Sbjct: 720 RPDQVWCEEGVFEFFNRLVPPDCCTARAFLRWA 752 >UniRef50_A8ZWI2 ATP-dependent helicase HrpA n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZWI2_DESOH Length = 1307 Score = 644 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 186/751 (24%), Positives = 320/751 (42%), Gaps = 83/751 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLA 60 +LP+A E++ A+ P V++S TG+GK+T +P +A G +G+I +PRR+A Sbjct: 75 PALPIAPRQDEIIAAIQKHPVVIVSGATGSGKTTQIPRYCVAAGCGRDGRIGCTQPRRIA 134 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +VA R+A+ L VG+++R + ++++T+G+L QRD L+ + Sbjct: 135 AVSVAARIADELGTASTGLVGHKIRFSDTTAGTHLIKIMTDGILLAEAQRDRYLNEYDAI 194 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRS 180 ++DE HERSL D L +L V RDDL+++I SAT+D ++ +APV+ GR Sbjct: 195 VVDEAHERSLNIDFILGILKQVL-AKRDDLRVVITSATIDTEKFSAAFDQAPVIEVSGRM 253 Query: 181 FPVERRYLPLPAH-------QRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 233 +PVE +Y P + AVA R G +L+F+P +I+ + + Sbjct: 254 YPVEIKYTPPEPEFGNGEPPTYVELAVAEVERVCRRSPFGDILVFMPTAQDIRETCDMIE 313 Query: 234 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 293 R + PL+ LS DQ + P RK+++ATNIAETS+TI GIR VVD Sbjct: 314 GRRMPGATVMPLFARLSGADQARVFSRPPG--RKIIVATNIAETSITIPGIRYVVDTGLA 371 Query: 294 RVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEIL 353 R++ ++PRT T L + +SQ+S QRAGR GR+E G+ + L ++ E + PE+L Sbjct: 372 RISYYNPRTRTTSLSVRSISQSSCQQRAGRCGRVENGVCVRLYDQKDFESRHLFTPPEVL 431 Query: 354 QSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEG-----ERLSAQG 408 +++L+ +++ ++ P ++D+P ++ L LGA++ RL+ G Sbjct: 432 RANLAEVVLRMMALKLGTPDTFPFVDRPADRSIRDGYDTLVELGAIQAVSRGGYRLTETG 491 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAIL-EEPPRMGNSDLGVAFSRNQPAWQQ 467 + MA + DPRLA +L+ A + A + + L + PR ++ A+ Sbjct: 492 RLMAKIPADPRLARILIEAGKNGCLEPAVVVVSALSMQDPRETPAERLKEARAAHAAFAH 551 Query: 468 RSQQLLKRLNVRGGEAD--SSLIAPLLAGAFADRIARRRGQDGRYQL------------- 512 + + LN+ D + + F R +D Q+ Sbjct: 552 PASDFITLLNIWEACRDKGTGQLKRFCRDHFLSFRRMREWRDLYAQMQQIAKEHGLGTGL 611 Query: 513 ---------------------------------------ANGMGAMLDANDALSRHE--W 531 A G M+ AL E Sbjct: 612 AAIDRHQDPDGFYAAFHRTLLSGYLSNIAEKKEKNIYNGAGGKTMMIFPGSALFNTEPSM 671 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT-VEWDDAQGTLKAWRRLQI 590 ++A L++ S +D + L +++ W ++ + A R + Sbjct: 672 IMAAELVETSRL---YARTVAAIDRQWIRPLAGDLCRETYLAPRWRRSREEVVADCRTTL 728 Query: 591 GQLTV---KVQPLAKPSEDELHQAMLNGIRDKGL--SVLNWTAEAEQLRLRLLCAAKWLP 645 LTV + + + G L++ A +L + L Sbjct: 729 FGLTVDFRESVSYGRVDPAGAADIFIRSALVNGDVKQPLSFMAHNTRLIEEGVEIENRLR 788 Query: 646 EYDWPAVDDESLLAALETWLLPHMTGVHSLR 676 + A D+ L A L + + +L+ Sbjct: 789 RKTFLA-GDDDLFAFYRQRLDNDVYSMRTLK 818 >UniRef50_C9ZMN0 ATP-dependent RNA helicase, putative n=4 Tax=Trypanosoma RepID=C9ZMN0_TRYBG Length = 742 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 166/633 (26%), Positives = 286/633 (45%), Gaps = 74/633 (11%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGKIILLEPRRLAA 61 ++LPV EL + VL TG+GK+T +P + + + G ++ +PRR+AA Sbjct: 81 TTLPVYQRAKELTQNMRDHQVVLFVGETGSGKTTQVPQFI-SEMELPGVVVCTQPRRIAA 139 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+A ++ + G+ VGYR+R ++ V T+L +T+G+L R D +LS + +V+ Sbjct: 140 MSIAVRVAAEMDVQLGEEVGYRVRFKSMVSDKTKLLYMTDGMLLREAFSDRDLSRISVVV 199 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HER+++ D+ L +L + R D +L++MSATLD +R Q P+AP++ EGR + Sbjct: 200 VDEAHERTVETDVLLGVLR-LLMQRRQDFRLVVMSATLDMERFQAYFPKAPLIQVEGRMY 258 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQ----LASRIG 237 V+ Y +P + V L + G +L FL G EI+R + L + Sbjct: 259 DVQVLYSTVPVKDYVEACVERVCDIHLNEPPGDILCFLTGEAEIERAVSRTKLKLEHLLA 318 Query: 238 SD------------VLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 285 D + PLYG+L ++DQ + A + RK++ ATNIAETSLTI+GI Sbjct: 319 DDGNTVSSNGAQLLARVLPLYGSLGVDDQGRVFSNAGKNTRKIIFATNIAETSLTIDGIV 378 Query: 286 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 345 VVDC + + ++ + L+ +S+AS QR GRAGR PG L + Sbjct: 379 YVVDCGYHKQSLYNAEARVDYLLPAVISKASAEQRKGRAGRTRPGKCFRLFQQSDFSSFP 438 Query: 346 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RL 404 Q+ PE+L+S++ ++ LL+ ++P Q +++D P +++ A L + GA++ + +L Sbjct: 439 NQTHPEVLRSNMINTVLLLLKLDVTNPYQFAFIDPPSQQSVMDAYCQLSLFGAVDDDLQL 498 Query: 405 SAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQP 463 + G+ MA D LA +L+ + AA AA I A+LE + + G+ + Sbjct: 499 TDFGRLMADFPVDACLARVLMRSAQYGCAADAAVIVAMLETRNVLVRPASRGIEAEQKHV 558 Query: 464 AWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL----------- 512 ++ L V S + F A ++ + QL Sbjct: 559 MFRHPDGDHLTLFKVFHAFWRSGQSSQYCFDNFLAYQALQQAVNVYTQLTKLMKKKNICF 618 Query: 513 -----------------------------------------ANGMGAMLDAND--ALSRH 529 + L + ++S Sbjct: 619 VSTYDDRSGKLDSVAIRKAVLEGFFTQVAYKPPGGELYKTVRDSQMVALHRHSFPSMSGS 678 Query: 530 EWLIAPLLLQGSASPDARILLALLVDIDELVQR 562 I L+ I +A ++ + L++ Sbjct: 679 PSWIVYDRLEVQGQGGTFIRVASAIEPEWLLEV 711 >UniRef50_A7E6W3 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7E6W3_SCLS1 Length = 696 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 154/560 (27%), Positives = 255/560 (45%), Gaps = 49/560 (8%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP+A LL ++ P ++ TG+GK+T +P L +I + +PRR+AA Sbjct: 21 LPIAQHRESLLYLIESYPVTIVIGHTGSGKTTQIPQFLEKAGWCANGKQIAVTQPRRVAA 80 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 VA R+AE + + G VGY +R ++ T+++ +T+G+L R DP LS +++ Sbjct: 81 TTVAIRVAEEVGCEVGKEVGYSIRFEDVTSAATKIKFLTDGLLLREALVDPLLSRYSVIM 140 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAP--------- 172 +DE HERSL D+ L +L + + +DL+++I SATL + P Sbjct: 141 VDEAHERSLSTDILLGVLKKILKKRPNDLRIIISSATLQAEDFLNFFSNDPEVEAKPNVD 200 Query: 173 ---------------------------VVISEGRSFPVERRYLPLPAHQRFDDAVAVATA 205 ++ EGR +PV+ YL PA + A+ Sbjct: 201 DAMTLDDLIAQGSSSTNGSKNDGKIGQIISLEGRMYPVDILYLENPAEDYLERAIDTVFD 260 Query: 206 EMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS------DVLLCPLYGALSLNDQRKAIL 259 ++ G +L+FL G EI + + ++ R S ++ PLY LS Q Sbjct: 261 IHTKEPDGDILVFLTGREEIDKAVQAISERAASLHPRSQALMPLPLYAGLSTEQQMFVFE 320 Query: 260 PAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQ 319 A + RKV+ +TNIAE S+TI+GI VVDC ++ ++P TG+ L +S+AS TQ Sbjct: 321 LAQENTRKVIFSTNIAEASVTIDGIIYVVDCGFVKLRAYNPITGIETLTATPISKASATQ 380 Query: 320 RAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLD 379 R+GRAGR +PG L + + + PEI +S+L+ ++++L G + + +L Sbjct: 381 RSGRAGRTKPGKCFRLYTEANFQALEEATVPEIQRSNLAPIILQLKALGIDNIVRFPFLT 440 Query: 380 QPPVVNLLAAKRLLQMLGALEG-ERLS-AQGQKMAALGNDPRLAAMLVSAKNDDEAATAA 437 PP ++ LL LGAL+ +L+ G +MA L +P +A L+SA + + + Sbjct: 441 SPPAELIIRGLELLYSLGALDTYAKLTKPLGTRMAELAVEPMMAKTLLSASSFNCLSEIL 500 Query: 438 KIAAILEEPP--RMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLI-APLLAG 494 IAA+ + D A + + + LN+ Sbjct: 501 TIAAMTSVGGNIFYNDYDEKKAMETAKRKFAVEEGDHITLLNIYQSFITKGKKQPRFCHD 560 Query: 495 AFADRIARRRGQDGRYQLAN 514 + + A + R QL Sbjct: 561 NYLNFKALSKAISIRSQLKR 580 >UniRef50_Q1C7D5 ATP-dependent helicase HrpA n=4 Tax=Bacteria RepID=Q1C7D5_YERPA Length = 644 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 169/530 (31%), Positives = 274/530 (51%), Gaps = 21/530 (3%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLAA 61 +LPV+ ++ A+ ++++ TG+GK+T LP L G+ G I +PRRLAA Sbjct: 72 NLPVSQKKQDIYNAIRDHQVIIVAGETGSGKTTQLPKICLELGRGVKGVIGHTQPRRLAA 131 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 R VA R+A+ L+ G VGY++R + VG NT ++++T+G+L IQ+D L +I Sbjct: 132 RTVANRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLI 191 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 +DE HERSL D L L ++ R DLK++I SAT+D R Q AP++ GR++ Sbjct: 192 IDEAHERSLNIDFILGYLRELLPK-RPDLKVIITSATIDPQRFSQHFNNAPIIEVSGRTY 250 Query: 182 PVERRYLPLPAHQRFD-----DAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236 PVE RY P+ A+ A E+ R+ +G +L+F+ G EI+ + L + Sbjct: 251 PVEVRYRPIVDDADDVDRDQLQAIFDAVDELGRESAGDILIFMSGEREIRDTADALIKQN 310 Query: 237 GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296 + PLY LS ++Q + R++VLATN+AETSLT+ GI+ V+D R++ Sbjct: 311 LPHTEVLPLYARLSNSEQNRVFQS--HHGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 Query: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSD 356 R+ RT + RL + +SQAS QR GR GR+ GI + L +++ ++PEIL+++ Sbjct: 369 RYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFTDPEILRTN 428 Query: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-----EGERLSAQGQKM 411 L+ +++++ G D A +++ P N+ RLL+ LGA+ ++L+ G+++ Sbjct: 429 LASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQLTPLGRQL 488 Query: 412 AALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQPAWQQRSQ 470 A L DPRLA M++ A+ I + L + PR D A + + Sbjct: 489 AQLPVDPRLARMVLQAQKSGCVRELMIITSALSIQDPRERPVDKQQASDEKHRRFADKDS 548 Query: 471 QLLKRLNVR------GGEADSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 L +N+ S+ L + + + R QD QL Sbjct: 549 DFLAFVNLWDYLKEQQKALSSAQFRKLCRSDYLNYLRVREWQDIYTQLRQ 598 >UniRef50_Q9FZC3 T1K7.25 protein n=12 Tax=Embryophyta RepID=Q9FZC3_ARATH Length = 726 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 168/679 (24%), Positives = 270/679 (39%), Gaps = 118/679 (17%) Query: 5 PVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAAR 62 PV L+ + +++ TG+GK+T LP L I + +PRR+AA Sbjct: 54 PVEK---RLVEEVQKNDILIIVGETGSGKTTQLPQFLYNAGFCREGKMIGITQPRRIAAV 110 Query: 63 NVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVIL 122 VA+R+AE + G VGY +R + +TRL+ +T+G+L R DP LS ++I+ Sbjct: 111 TVAKRVAEECEVQLGQKVGYSIRFDDTTSGSTRLKYMTDGLLLREALLDPHLSRYSVIIV 170 Query: 123 DEFHERSLQADLALALLLDVQQGLR----------------------------------- 147 DE H+RS+ D+ LALL +Q+ Sbjct: 171 DEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQVQTTTRDANGPQQNGVLKGY 230 Query: 148 -----DDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAV 202 LKL+IMSA+LD + A V +GR FPV+ Y P D + Sbjct: 231 QGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDYVDATLVT 290 Query: 203 ATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI------GSDVLLCPLYGALSLNDQRK 256 ++ G +L+FL G EI+ V+ + R+ +L ++ AL Q K Sbjct: 291 IFQIHFEEKPGDILVFLTGQDEIESVERLVQERLQNIPEDKRKLLPLAIFSALPSEQQMK 350 Query: 257 AILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQAS 316 PAP G RKV+LATNIAETS+TI GIR V+D + +DP G+ L S+A Sbjct: 351 VFAPAPTGFRKVILATNIAETSITIPGIRYVIDPGFVKARSYDPSKGMESLDVVPASKAQ 410 Query: 317 MTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMS 376 QR+GRAGR PG S L + + E+ ++PEI + +LS ++++L G D Sbjct: 411 TLQRSGRAGREGPGKSFRLYPEREFEKLEDSTKPEIKRCNLSNIILQLKALGIDDIVGFD 470 Query: 377 WLDQPPVVNLLAAKRLLQMLGAL-EGERL-SAQGQKMAALGNDPRLAAMLVSAKNDDEAA 434 ++D+P ++ A L LGAL + +L + G +M+ L +P + L+ A + Sbjct: 471 FIDKPSRGAIIKALAELHSLGALADDGKLENPVGYQMSRLPLEPVYSKALILANQFNCLE 530 Query: 435 TAAKIAAILEEPPRMG-NSDLGVAFSRNQPAWQQRSQQLLKRLNVRG------------- 480 A+L + ++ + L L+V Sbjct: 531 EMLITVAVLSVESIFYDPREKREEARTSKNHFASVEGDHLTYLSVYRESDEFLEKRKAAG 590 Query: 481 -GEADSSLIAPLLAGAFADRIARRRGQDGRYQ---------------------------- 511 G ++ + + + + +D Q Sbjct: 591 SGNNIDKIMKKWCKENYVNSRSLKHARDIYRQIREHVEQIGFNVSSCGNDMLAFRRCLAA 650 Query: 512 -----------------LANGMGAMLDANDAL--SRHEWLIAPLLLQGSASPDARILLAL 552 L +G + L ++ E +I L+Q S I Sbjct: 651 SFFLKAAQRQLDGTYRALESGEVVHIHPTSVLFRAKPECVIFNELMQTSKK---YIKNLT 707 Query: 553 LVDIDELVQRCPQLVQQSD 571 ++D L + P Q ++ Sbjct: 708 IIDSLWLSELAPHHFQTAE 726 >UniRef50_C2KSU4 HrpA family ATP-dependent helicase n=3 Tax=Mobiluncus RepID=C2KSU4_9ACTO Length = 1292 Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 210/840 (25%), Positives = 334/840 (39%), Gaps = 144/840 (17%) Query: 2 SSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLA-HPGINGKIILLEPRRLA 60 LPV E+L A+ +++S TG+GK+T LP L G NG I +PRRLA Sbjct: 9 PELPVTEARAEILDAMRHHQVIVISGATGSGKTTQLPKMCLEVGRGTNGIIGHTQPRRLA 68 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 AR VA R+A ++E G TVGY++R + VG +TR++++T+G+L + +DP+L + Sbjct: 69 ARTVATRIAAEMDETLGQTVGYQVRFRQNVGADTRIKLMTDGILLSEMSQDPQLRRYDTL 128 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP-EAPVVISEGR 179 I+DE HERSL D L L + +R DL ++I SAT+D+ R + PV+ GR Sbjct: 129 IIDEAHERSLNIDFILGYLQRLV-KIRPDLLVIITSATIDSQRFATAFGVDTPVIEVAGR 187 Query: 180 SFPVERRYLP--------------------------------LPAHQRFDDA--VAVATA 205 +FPVE RY P Q D + A Sbjct: 188 TFPVEIRYRPLVTEVSPGHLESCAIEPSLNPEKSLEIKETEVDVVDQEIDQVTGILRAVD 247 Query: 206 EMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSD-------------VLLCPLYGALSLN 252 E++ G +L+FL G +I+ L +G + + PLY LS Sbjct: 248 ELVEAGPGDILVFLAGEADIRDTAAALKGHLGHRFVEPDSKSNVPGAIEVLPLYSRLSEA 307 Query: 253 DQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRV 312 Q+ AP +R++VLATN+AETSLT+ GI V+D R++R+ +T + RL + + Sbjct: 308 AQQSIF--APHSLRRIVLATNVAETSLTVPGIVYVIDPGVARISRYSNKTRVQRLPIEPI 365 Query: 313 SQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDP 372 SQAS QRAGR GR PGI + L +++ +EPEI ++ LS +++++ G + Sbjct: 366 SQASANQRAGRCGRTCPGICIRLYSQQDFLSRPEYTEPEIQRTSLSAVILQMASLGLGEV 425 Query: 373 AQMSWLDQPPVVNLLAAKRLLQMLGALEGE----RLSAQGQKMAALGNDPRLAAMLVSAK 428 A +LD P ++ L LGAL+ R++ G+K+A L DPRLA +L++A Sbjct: 426 ADFPFLDPPSPRSVTDGVLELSQLGALDTRKKPVRITRLGRKIARLPLDPRLARILLAAD 485 Query: 429 NDDEAATAAKIAAIL-EEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG------G 481 A+ A + A L + R S+ ++ L L + G Sbjct: 486 ELGVASEAVIVVAALAMQDVRERPSEKRSEADEMHARFEDERSDFLAYLRLWSYLQRQKG 545 Query: 482 EADSSLIAPLLAGAFADRIARRRG------------------------------------ 505 S + F + R Sbjct: 546 SLSGSAFRRRCSREFLHYLRVREWFDLAKQLREMLQEIGINTRSLNEINVDVVDANALHQ 605 Query: 506 ---------------QDGRYQLANGMGAMLDANDALSRH--EWLIAPLLLQGSASPDARI 548 Q Y A G ++ L+ +W++A L++ S Sbjct: 606 ALLYGMLAQIGYWSSQKREYLGARGQKFVVWPGSGLTSKHYDWVMAAELVETSRL---FA 662 Query: 549 LLALLVDIDELVQRCPQLVQQS-DTVEWDDAQGTLKAWRRLQIGQLTVKVQPLA------ 601 V+ + + Q L+ +S W R+ + LT+ Sbjct: 663 RTVARVEPEWIEQAGKYLLVRSYFEPYWSLRAQAAMIHERVTLYGLTLVADRAHTLASLG 722 Query: 602 ------KPSEDELHQAMLNGIRDKGLSVLNWTAEAEQL-RLRLLCAAKWLPEYDWP-AVD 653 +P+ D + G Q R RL+ A + P +D Sbjct: 723 STLVENQPARDLARALFIRHALVAGE--WRENPAFIQTNRERLVAAQEARVRLQIPGEID 780 Query: 654 DESLLAALETWLLPHMTGVHSLRGL---KSLDIYQALRGLLDWGM---QQRLDSELPAHY 707 D +L + + L ++T + K + Q L W + + P + Sbjct: 781 DFTLESWFDKKLPENVTSAAAFNAWWKTKRFEDPQYL--DFPWELLVPASEDAQQFPDFW 838 >UniRef50_Q9H6R0 Putative ATP-dependent RNA helicase DHX33 n=37 Tax=Eumetazoa RepID=DHX33_HUMAN Length = 707 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 156/632 (24%), Positives = 269/632 (42%), Gaps = 67/632 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP-GINGKIILLEPRRLAA 61 SLP+ +LL L +L TG+GK+T +P L G I + +PRR+AA Sbjct: 73 SLPILQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQGIIAVTQPRRVAA 132 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 ++A R+++ + G VGY +R + +T ++ +T+G+L R D L VI Sbjct: 133 ISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTGIKFLTDGMLLREAISDSLLRKYSCVI 192 Query: 122 LDEFHERSLQADLALALLLDVQQGLRD----DLKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ D+ ++ Q+ ++ LK+++MSAT+D D Q APV+ E Sbjct: 193 LDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVDLFSQYFNGAPVLYLE 252 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESG-SLLLFLPGVGEIQ---RVQEQLA 233 GR P++ Y P + A+ S +L+FL G EI+ + +A Sbjct: 253 GRQHPIQVFYTKQPQNDYLHAALVSVFQIHQEAPSSQDILVFLTGQEEIEAMSKTCRDIA 312 Query: 234 SRIG---SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 + +L+ PLY +L Q + AP+G RKV+++TNIAETS+TI GI+ VVD Sbjct: 313 KHLPDGCPAMLVLPLYASLPYAQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDT 372 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 + +++P +GL L QRVS+ QR GRAGR + GI L +++ E+ + P Sbjct: 373 GMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGREDSGICYRLYTEDEFEKFDKMTVP 432 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGER----LSA 406 EI + +L+ ++++LL + ++ +P ++ AA L +LGALE + L+ Sbjct: 433 EIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDHIQAAIAQLDLLGALEHKDDQLTLTP 492 Query: 407 QGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAW 465 G+KMAA +P+ A ++ + I ++L + + + Sbjct: 493 MGRKMAAFPLEPKFAKTILMSPKFHCTEEILTIVSLLSVDSVLHNPPSRREEVQGVRKKF 552 Query: 466 QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL-----------AN 514 + LN+ + F + + R QL A+ Sbjct: 553 ISSEGDHMTLLNIYRTFKNLGGNKDWCKENFVNSKNMTLVAEVRAQLRDICLKMSMPIAS 612 Query: 515 GMG----------------------------------AMLDANDAL--SRHEWLIAPLLL 538 G + + L + ++ LL Sbjct: 613 SRGDVESVRRCLAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTELL 672 Query: 539 QGSASPDARILLALLVDIDELVQRCPQLVQQS 570 + ++D L + P+ ++ Sbjct: 673 YT---NKCYMRDLCVIDAQWLYEAAPEYFRRK 701 >UniRef50_A4S4Y0 Predicted protein n=3 Tax=Mamiellales RepID=A4S4Y0_OSTLU Length = 679 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 162/641 (25%), Positives = 272/641 (42%), Gaps = 74/641 (11%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING--KIILLEPRRLA 60 SLP+ L+ + + V++ TG+GK+T +P + + I + +PRR+A Sbjct: 41 SLPIYRAKDRLMEEIRKSETVIIIGETGSGKTTQIPQYVYEDMTLTNGLMIGVTQPRRVA 100 Query: 61 ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV 120 A +V++R+A+ G VGY +R ++ TR++ +T+G+L R DP LS G++ Sbjct: 101 AVSVSRRVADETGTAHGTLVGYAIRFEDVSSEETRIKFLTDGMLLREAVGDPLLSKYGVI 160 Query: 121 ILDEFHERSLQADLALALLLDVQQGLR------------DDLKLLIMSATLDNDRLQQML 168 ++DE HER+LQ D L + VQ+ R L++++MSATL+ + Sbjct: 161 MIDEAHERTLQTDFLLGTIKGVQRRRRESLGEDQYGRALPPLRVIVMSATLEASSFSKFF 220 Query: 169 PEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRV 228 APV+ S GR+FPVE Y P D A+ + +G +L+FL G EI+ + Sbjct: 221 DGAPVIYSRGRTFPVEMFYTEEPEEDYLDAAMWTVLQVNEEEAAGDVLVFLTGQEEIESL 280 Query: 229 QEQLASRIGS------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIE 282 L + + + L+ AL +Q K P P G RKVVLATNIAETSLTI Sbjct: 281 GRMLREKASELPSNVLKLNVVLLFAALPPEEQMKVFEPTPLGTRKVVLATNIAETSLTIN 340 Query: 283 GIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAE 342 GIR VVD ++ PR+G+ L+ ++Q+ QRAGRAGR PG L +E Sbjct: 341 GIRYVVDSGLSKLRTHHPRSGVDELLVTPIAQSQAQQRAGRAGREAPGKCFRLYTEEIMP 400 Query: 343 RAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EG 401 +PE+L+++LSG++++L D ++D PP LL + LL L AL + Sbjct: 401 SLEKYVKPELLRTNLSGVVLQLKAMQVDDILSFPFIDPPPKEALLRSLELLYSLDALDDD 460 Query: 402 ERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSR 460 +L+ G+KMA +P A +++A+ + A + ++L + + + Sbjct: 461 GKLNDVGKKMARFPLEPMAARCVIAAEIEGCAIETLAVLSMLSTDSVFQFSREADGQKNV 520 Query: 461 NQPAWQQRSQQLLKRLNVRGGE--ADSSLIAPLLAGAFADRIARRRGQDGRYQLAN---- 514 + +++ L L V + A + QL Sbjct: 521 ARHKLKRKEGDHLTLLRVFNEFSACSPKRSRDWCREHQINHRAMTKAVKINEQLTRAAMS 580 Query: 515 -----------------------------------------GMGAMLDANDALSR--HEW 531 G + + + + E Sbjct: 581 QGINLTSCEDDFTLVLRSLVSGFFMNTASKEMDGSFKVFTTGQKLTIHPSSVMFQSPPET 640 Query: 532 LIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572 ++ L++ + + L + + + T Sbjct: 641 ILFNELVRTNKM---YARDVSSIKKSWLSELASKTFSRRST 678 >UniRef50_B0ECZ2 ATP-dependent RNA helicase, putative n=2 Tax=Entamoeba RepID=B0ECZ2_ENTDI Length = 664 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 150/523 (28%), Positives = 248/523 (47%), Gaps = 13/523 (2%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRLAA 61 LP+ ++++ L +++ TG GK+T LP +L GK I + +PRR+AA Sbjct: 25 QLPIRQSKDDIISELKKHQTMVVVGETGCGKTTQLPQFILESNICEGKKIGVTQPRRVAA 84 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +A+R+++ + + G TVGYR+R + + +T++E +T+G+L R DP+L G+++ Sbjct: 85 ITLAERVSKEVGCRVGTTVGYRVRFEEKMSKDTKIEYLTDGMLLRTALLDPDLKSYGVIV 144 Query: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181 LDE HER++ D+ + LL + + R DLK+++MSATLD+ P + GR Sbjct: 145 LDEAHERTVHTDILIGLLRGILR-RRKDLKVVVMSATLDSQLFSNFFAG-PTLTIAGRQH 202 Query: 182 PVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS--- 238 P+E +L D ++ + G +L+FLPG I+ V+ L R+ + Sbjct: 203 PIELFHLTESEDSPVDASITAILQLHMSAGPGDILVFLPGQDAIESVEAALLERMKNAPA 262 Query: 239 ---DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERV 295 + + PLY AL Q P P RK+VL+TNIAETS+TI G+R V+D + Sbjct: 263 TVKPIQVLPLYAALPPEQQLLIFSPPPPDTRKIVLSTNIAETSVTIPGMRFVIDTGLVKE 322 Query: 296 ARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQS 355 + + G+ L T VS+A QRAGRAGR PG L ++ +A + PEI + Sbjct: 323 KEYQSKIGMEALKTTWVSKAQAMQRAGRAGREAPGQCYRLYTSKRFSEFSATTTPEIQRC 382 Query: 356 DLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLSAQGQKMAALG 415 L G++++L D Q +L P ++ A+ L LGALE R++ G+ M AL Sbjct: 383 SLDGVVLQLKALNVIDVTQFDFLQPPSGDSISRAEINLSKLGALENGRITPLGKVMVALP 442 Query: 416 NDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG--NSDLGVAFSRNQPAWQQRSQQLL 473 P A +++A + A I A+L + + ++ + + Sbjct: 443 VAPPFARTIIAAAQSNCLAHILCIVAMLAVDTQFFVSAPSIREKAQQSMRMYSSDNGDHF 502 Query: 474 KRLNVRGGEA--DSSLIAPLLAGAFADRIARRRGQDGRYQLAN 514 L++ + + A QL Sbjct: 503 MLLSLYLAFKKVGVNRRKRWCVENALNYKALNTALSTHDQLVQ 545 >UniRef50_C4LWD6 Helicase, putative n=10 Tax=Eukaryota RepID=C4LWD6_ENTHI Length = 675 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 160/645 (24%), Positives = 298/645 (46%), Gaps = 63/645 (9%) Query: 1 MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59 +++LPV E++ L ++L TG+GK+T +P L GK + +PRR+ Sbjct: 37 INALPVKQYEKEVINELKKNRVLILEGATGSGKTTQIPKFCLNPEICGGKGVCCTQPRRV 96 Query: 60 AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119 AA +VAQR+AE ++ + G+ VGY +R +C T+L +T+G+L R + DP++ G+ Sbjct: 97 AAISVAQRVAEEMDVQLGEEVGYCVRFDDCRSDKTKLTYMTDGMLLRELMGDPKIQKYGV 156 Query: 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGR 179 ++LDE HER++ D+ +L + + R+DLK+++MSATL+ + ++ AP + EGR Sbjct: 157 ILLDEAHERTVSTDILFGVLKSLLEE-REDLKIVVMSATLEATKFKEYFDNAPNMSVEGR 215 Query: 180 SFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLAS-RIGS 238 ++PV Y P + F+ AV +++ + G +L+F+ G EI+ + ++ S + S Sbjct: 216 TYPVTINYSRYPENDYFEAAVK-VVSKIDNEPEGDVLIFMTGEEEIEEMVARINSMKTKS 274 Query: 239 DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARF 298 ++ PLY AL +Q++ RKV+++TNIAETS+TI+GI V+D + + Sbjct: 275 HMIALPLYSALPQQEQQRVFEKV--NGRKVIVSTNIAETSVTIDGIVYVIDTGYVKQKVY 332 Query: 299 DPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQA-ERAAAQSEPEILQSDL 357 P T + L +SQA+ QRAGRAGR PG L ++ E Q+ PE+L++ L Sbjct: 333 LPSTRVETLQVTAISQAAAQQRAGRAGRTRPGQCYRLYTEKGFNESLPKQTVPEMLRTSL 392 Query: 358 SGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGE-RLSAQGQKMAALGN 416 + +++ + + G D +LD P ++ A L L AL+ + L+ G K++ + Sbjct: 393 ASVILHMKKIGIKDILHFDYLDAPSPQVMVRALEQLYYLNALDDKTNLTEIGSKISEIPV 452 Query: 417 DPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAF--SRNQPAWQQRSQQLL 473 DP+LA L+++ + + + I ++L P + + + + Sbjct: 453 DPQLAVTLIASIDYNVVDEISTIVSLLNVPSIFYRPKEQEEKSKADAAKAYFNDHESDHI 512 Query: 474 KRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL--------------------- 512 LN ++ + + ++ A ++ + + QL Sbjct: 513 TLLNTYNAWIENGKDSKWAWNNYVNQRALKQAESIKNQLLGILYRMGVKQQQKPIEDVRK 572 Query: 513 ----------------------------ANGMGAMLDANDALSRHEWLIAPLLLQGSASP 544 + +L + + + EW++ + Sbjct: 573 RKELIRKALCKGFFMQSAHQVKGGYQIVCDNRIVLLHPSSCIGKREWILYNEYVMTKRE- 631 Query: 545 DARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQ 589 + A + + L + P+ Q D + + LK +R Sbjct: 632 --YVRTASSIQPEWLFEASPKYFAQLDKFKESETTRALKRVKRAM 674 >UniRef50_B4JQ72 GH13648 n=1 Tax=Drosophila grimshawi RepID=B4JQ72_DROGR Length = 698 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 174/628 (27%), Positives = 274/628 (43%), Gaps = 69/628 (10%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGING-KIILLEPRRLAA 61 SLPV +L L+ +L+ TG+GK+T +P LL NG I + +PRR+AA Sbjct: 71 SLPVYNCRQRILKELEANDTLLIMGETGSGKTTQIPQFLLQAGYANGGIIGITQPRRVAA 130 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121 +A+R+A+ L G+TVGY +R ++ TR+ +T+G+L R D L ++ Sbjct: 131 ITIAKRVAQELATGIGETVGYTVRFEDATTERTRIRYMTDGILLREAIGDRLLRKYSAIM 190 Query: 122 LDEFHERSLQADLALALLLDVQ----QGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISE 177 LDE HER++ AD+ ++ Q + LK++I SAT+D D Q + E Sbjct: 191 LDEAHERTVNADVLFGIVKQAQLERAKQRLPKLKIIITSATMDIDHFGQYFG-VRGMYLE 249 Query: 178 GRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQE-SGSLLLFLPGVGEIQRVQEQLASRI 236 GR+ PV + A+ + + +L+FL G EI+ + +Q+ Sbjct: 250 GRTHPVRVLHAKDSQEDYIHAALVTLFDIHRHEPINHDVLIFLTGQEEIEALAQQIRQLA 309 Query: 237 ------GSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDC 290 SDV + LY L+ Q + LP P RK+VLATNIAETS+TI GIR V+DC Sbjct: 310 RINNTGPSDVRVFTLYAQLAQGKQLECFLPVPANTRKIVLATNIAETSITIPGIRCVIDC 369 Query: 291 AQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAAAQSEP 350 + F+P TGL L T R+SQA QR GRAGR PG +K E+ + S P Sbjct: 370 GYVKEKSFNPGTGLELLKTVRISQAQAWQRCGRAGRDAPGKCYRTYSKASMEQFRSTSLP 429 Query: 351 EILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERL--SAQG 408 EIL+S+L+ +++LL G D + ++D PP + +A R L+ LGA++ L + G Sbjct: 430 EILRSNLTSTVLQLLALGI-DCSNFDFIDAPPPEGISSAHRALEQLGAIKPAPLVITTTG 488 Query: 409 QKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRM-GNSDLGVAFSRNQPAWQQ 467 + MA DPR A +L+SA + + A L G++D + +Q Sbjct: 489 RWMAQFPLDPRYAKLLLSAPSFGCMEEMLSLVAALSSDNVFIGHTDKSELAALAHAKFQS 548 Query: 468 RSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG---------- 517 + L LNV + F + ++ R QLA G Sbjct: 549 KHGDHLTLLNVFSTFQKTEKPKIWCHDNFLNIRNLTYARNVRNQLAEISGRLNLAINSCG 608 Query: 518 ------------------------------------AMLDANDALS---RHEWLIAPLLL 538 A + + L + + ++ ++ Sbjct: 609 GDNVDAVKKCLLTGLFENIALLQKEGHYLTVSGRVKAKIHPSSVLHGKYKPQCILFTEMV 668 Query: 539 QGSASPDARILLALLVDIDELVQRCPQL 566 Q + + + + + P + Sbjct: 669 QTE---HNFLRQVTEISSEWVEEVLPAM 693 >UniRef50_D1IUD7 Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IUD7_VITVI Length = 687 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 157/631 (24%), Positives = 258/631 (40%), Gaps = 104/631 (16%) Query: 3 SLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPG-------INGKIILLE 55 +LPV E L L ++L TG+GK+T +P +L I + Sbjct: 63 TLPVWHQKEEFLQVLKANQSLILVGETGSGKTTQIPQFVLEAVDIETPDKRKKMMIACTQ 122 Query: 56 PRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELS 115 PRR+AA +V++R+AE ++ G+ VGY +R ++C T L+ +T+G+L R DP L Sbjct: 123 PRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLE 182 Query: 116 GVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVI 175 ++ILDE HER+L D+ LL +V + R DLK+++MSATL+ ++ Q AP++ Sbjct: 183 RYKVIILDEAHERTLATDVLFGLLKEVLKN-RPDLKVVVMSATLEAEKFQGYFNGAPLMK 241 Query: 176 SEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR 235 GR PVE Y P + A+ + + +G +L+FL G EI+ ++++ Sbjct: 242 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEGAGDILVFLTGEEEIEDACKKISKE 301 Query: 236 IGS------DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVD 289 I + V PLY L Q+K PAP + +V Sbjct: 302 IANLGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPLTEV--------------------- 340 Query: 290 CAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAER-AAAQS 348 + L+ +S+AS QR+GRAGR +PG L ++ Q+ Sbjct: 341 -------------RVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQT 387 Query: 349 EPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGERLSAQ 407 PEIL+S+L+ ++ L + G D ++D P L+ A +L LGAL + L+ Sbjct: 388 YPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKL 447 Query: 408 GQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP-RMGNSDLGVAFSRNQPAWQ 466 G+ M+ DP+++ MLV + + + I+A+L P + + A + + Sbjct: 448 GEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKARFG 507 Query: 467 QRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMG--------- 517 L LNV ++ F ++ A + + R QL M Sbjct: 508 HIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKAADNVRQQLVRIMARFNLKLCST 567 Query: 518 ----------------------------------------AMLDANDAL-SRHEWLIAPL 536 L ++ L + EW+I Sbjct: 568 DFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNE 627 Query: 537 LLQGSASPDARILLALLVDIDELVQRCPQLV 567 + S + I V + LV P Sbjct: 628 YVLTSRN---FIRTVTDVRGEWLVDVAPHYY 655 >UniRef50_UPI0001925C54 PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 35, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925C54 Length = 748 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 171/647 (26%), Positives = 288/647 (44%), Gaps = 75/647 (11%) Query: 4 LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIN--GKIILLEPRRLAA 61 LP +L L+ V++SA TG+GKST +P L N I + +PRR+A Sbjct: 52 LPSFKYRNAVLYLLEKYQTVIISASTGSGKSTQIPQYLYEAGWTNEKKIIGITQPRRVAV 111 Query: 62 RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGLV 120 +VA R+AE + G VGY +R ++C + T+++ +T+G L R + DP LS ++ Sbjct: 112 TSVASRVAEEMGTALGREVGYSIRFEDCTDKDLTKIKFLTDGYLVREMMADPLLSQYSVL 171 Query: 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLP----------E 170 +LDE HER+L D+ + LL + + R DL+L+I SATLD D+ Q+ Sbjct: 172 MLDEVHERTLYTDVIIGLLKKILRK-RPDLRLIISSATLDADQYQKFFNIKKSVNKAEVT 230 Query: 171 APVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQE 230 + ++ EGR+FPV+ YL AV G +L+FL G E++ + Sbjct: 231 SVILEMEGRTFPVDIFYLQAAIPNYVKSAVDTVINIHKSYSDGDILVFLTGQDEVENALQ 290 Query: 231 QLASRIG------SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284 + + I +VLL PLYG L + +Q K AP RKVV++TN+AE S+TI GI Sbjct: 291 LIQNEINLLPKNIQNVLLLPLYGGLPMAEQLKVFQRAPPNTRKVVVSTNVAEASITISGI 350 Query: 285 RLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERA 344 V+D ++ ++ +GL L+ +S+AS QR+GRAGR+ G + L + + ++ Sbjct: 351 VYVIDSGFVKLKAYNAASGLDSLVITPISKASAAQRSGRAGRVRAGKAYRLYPECEFDKL 410 Query: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGAL-EGER 403 + + PEI +++L+ ++++L G S+ + ++L PP ++ LL LGAL E Sbjct: 411 SLFTIPEIQRTNLASVILQLKSLGISNVLRFNFLSAPPAQLMINGIELLFALGALTEEGN 470 Query: 404 LS-AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGN-SDLGVAFSRN 461 L+ G +MA +P L+ ML+ + N + A +AA+L+ ++ +R+ Sbjct: 471 LTEPLGVQMAEFPLNPMLSKMLLCSGNFQCSEEAVTLAAMLQIENVFVAVPNMKNKVTRS 530 Query: 462 QPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQL--------- 512 + + + L +NV F + + R R QL Sbjct: 531 KLRFAAKEGDHLTLINVYRAFIKHGKSMDWCHKHFLNYKSLVRVVKVRNQLISILKQYDI 590 Query: 513 ------------------------------------ANGMGAMLDANDALSR----HEWL 532 + L + LS + L Sbjct: 591 PIVSCKEDDEAIRKCIISGFFANVAKYHPSGEYRTVRDNRSLYLHPSSVLSSITPPPKLL 650 Query: 533 IAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQ 579 I +L S + A + + L++ + + D + Sbjct: 651 IFNEVLCTSK---DYMRDATDIKLSWLLELASSYYEYDTDLAMDRKK 694 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.169 0.546 Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,845,953,365 Number of Sequences: 3077464 Number of extensions: 321605190 Number of successful extensions: 1011955 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2608 Number of HSP's successfully gapped in prelim test: 3073 Number of HSP's that attempted gapping in prelim test: 987235 Number of HSP's gapped (non-prelim): 10914 length of query: 809 length of database: 1,040,396,356 effective HSP length: 137 effective length of query: 672 effective length of database: 618,783,788 effective search space: 415822705536 effective search space used: 415822705536 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 98 (42.0 bits)