BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (89 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0ADQ1 Protein yihD n=225 Tax=cellular organisms RepID=...   136   2e-31
UniRef50_P44900 Uncharacterized protein HI0845 n=33 Tax=Gammapro...   136   2e-31
UniRef50_A1SR29 Putative uncharacterized protein n=1 Tax=Psychro...   130   9e-30

>UniRef50_P0ADQ1 Protein yihD n=225 Tax=cellular organisms RepID=YIHD_ECO57
          Length = 89

 Score =  136 bits (343), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA 60
          MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA
Sbjct: 1  MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA 60

Query: 61 KDAVIPGLQKDYEEDFKTALLRARGVIKE 89
          KDAVIPGLQKDYEEDFKTALLRARGVIKE
Sbjct: 61 KDAVIPGLQKDYEEDFKTALLRARGVIKE 89


>UniRef50_P44900 Uncharacterized protein HI0845 n=33 Tax=Gammaproteobacteria
          RepID=Y845_HAEIN
          Length = 88

 Score =  136 bits (342), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/88 (65%), Positives = 71/88 (80%)

Query: 1  MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA 60
          MKCKRLNEV+ELLQ  W K+ DL+L++ LQK+A ESGF   L +LTD+++IY LKM  + 
Sbjct: 1  MKCKRLNEVLELLQSYWSKDSDLSLMEILQKIANESGFQKPLNELTDEVIIYQLKMDGTD 60

Query: 61 KDAVIPGLQKDYEEDFKTALLRARGVIK 88
          K   IPGL+KDYEEDFKTALLRARG+IK
Sbjct: 61 KYEPIPGLKKDYEEDFKTALLRARGIIK 88


>UniRef50_A1SR29 Putative uncharacterized protein n=1 Tax=Psychromonas ingrahamii
          37 RepID=A1SR29_PSYIN
          Length = 87

 Score =  130 bits (328), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 65/87 (74%)

Query: 1  MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA 60
          M+  R+N+VIELL+P W K  +L+L++ L +L +ESGFD  L  L D+++IYHLKM    
Sbjct: 1  MQSDRINKVIELLKPYWLKNKELSLIETLVRLTQESGFDKPLEKLNDEVIIYHLKMDQIE 60

Query: 61 KDAVIPGLQKDYEEDFKTALLRARGVI 87
           + ++PG+ KD ++DFKTALL+ARG+I
Sbjct: 61 ANEMLPGIAKDCKDDFKTALLQARGLI 87


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0ADQ1 Protein yihD n=225 Tax=cellular organisms RepID=...   136   2e-31
UniRef50_P44900 Uncharacterized protein HI0845 n=33 Tax=Gammapro...   136   2e-31
UniRef50_A1SR29 Putative uncharacterized protein n=1 Tax=Psychro...   130   9e-30

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_P0ADQ1 Protein yihD n=225 Tax=cellular organisms RepID=YIHD_ECO57
          Length = 89

 Score =  136 bits (343), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 1  MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA 60
          MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA
Sbjct: 1  MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA 60

Query: 61 KDAVIPGLQKDYEEDFKTALLRARGVIKE 89
          KDAVIPGLQKDYEEDFKTALLRARGVIKE
Sbjct: 61 KDAVIPGLQKDYEEDFKTALLRARGVIKE 89


>UniRef50_P44900 Uncharacterized protein HI0845 n=33 Tax=Gammaproteobacteria
          RepID=Y845_HAEIN
          Length = 88

 Score =  136 bits (342), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/88 (65%), Positives = 71/88 (80%)

Query: 1  MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA 60
          MKCKRLNEV+ELLQ  W K+ DL+L++ LQK+A ESGF   L +LTD+++IY LKM  + 
Sbjct: 1  MKCKRLNEVLELLQSYWSKDSDLSLMEILQKIANESGFQKPLNELTDEVIIYQLKMDGTD 60

Query: 61 KDAVIPGLQKDYEEDFKTALLRARGVIK 88
          K   IPGL+KDYEEDFKTALLRARG+IK
Sbjct: 61 KYEPIPGLKKDYEEDFKTALLRARGIIK 88


>UniRef50_A1SR29 Putative uncharacterized protein n=1 Tax=Psychromonas ingrahamii
          37 RepID=A1SR29_PSYIN
          Length = 87

 Score =  130 bits (328), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/87 (50%), Positives = 65/87 (74%)

Query: 1  MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA 60
          M+  R+N+VIELL+P W K  +L+L++ L +L +ESGFD  L  L D+++IYHLKM    
Sbjct: 1  MQSDRINKVIELLKPYWLKNKELSLIETLVRLTQESGFDKPLEKLNDEVIIYHLKMDQIE 60

Query: 61 KDAVIPGLQKDYEEDFKTALLRARGVI 87
           + ++PG+ KD ++DFKTALL+ARG+I
Sbjct: 61 ANEMLPGIAKDCKDDFKTALLQARGLI 87


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.312    0.143    0.384 

Lambda     K      H
   0.267   0.0434    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,583,860
Number of Sequences: 3077464
Number of extensions: 9059262
Number of successful extensions: 27492
Number of sequences better than 1.0e-01: 3
Number of HSP's better than  0.1 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27486
Number of HSP's gapped (non-prelim): 6
length of query: 89
length of database: 1,040,396,356
effective HSP length: 59
effective length of query: 30
effective length of database: 858,825,980
effective search space: 25764779400
effective search space used: 25764779400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 87 (38.0 bits)
