BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (181 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFY9 Protein seqA n=150 Tax=Gammaproteobacteria RepID... 379 e-104 UniRef50_A4W853 Negative regulator of replication initiation Seq... 325 3e-88 UniRef50_Q2NUN5 Negative modulator of replication initiation Seq... 249 4e-65 UniRef50_P44564 Protein seqA homolog n=24 Tax=Pasteurellaceae Re... 178 8e-44 UniRef50_A0KIH3 SeqA protein n=7 Tax=Gammaproteobacteria RepID=A... 172 5e-42 UniRef50_A4SPL2 SeqA protein n=1 Tax=Aeromonas salmonicida subsp... 156 3e-37 UniRef50_A3N0B4 DNA replication inhibitor protein n=9 Tax=Pasteu... 155 8e-37 UniRef50_A6FER2 SeqA protein n=1 Tax=Moritella sp. PE36 RepID=A6... 145 7e-34 UniRef50_C6RXJ0 SeqA protein n=1 Tax=Vibrio cholera CIRS 101 Rep... 134 1e-30 UniRef50_Q15TS1 Negative regulator of replication initiation n=1... 131 1e-29 UniRef50_Q5QXP4 Negative regulator of replication initiation n=1... 129 6e-29 UniRef50_A4CCC2 SeqA protein n=2 Tax=Alteromonadales RepID=A4CCC... 126 3e-28 UniRef50_Q485E3 SeqA protein n=3 Tax=Alteromonadales RepID=Q485E... 121 9e-27 UniRef50_A1STA5 Negative regulator of replication initiation Seq... 118 7e-26 UniRef50_B0TUS0 SeqA family protein n=17 Tax=Shewanella RepID=B0... 112 6e-24 UniRef50_Q082Q5 SeqA protein n=2 Tax=Shewanella RepID=Q082Q5_SHEFN 106 3e-22 UniRef50_A3QE89 SeqA family protein n=1 Tax=Shewanella loihica P... 104 2e-21 UniRef50_B6XBX2 Putative uncharacterized protein n=1 Tax=Provide... 96 5e-19 UniRef50_B4RST7 SeqA protein n=2 Tax=Alteromonas macleodii RepID... 94 3e-18 UniRef50_Q12MQ7 SeqA protein n=1 Tax=Shewanella denitrificans OS... 80 3e-14 UniRef50_C0B295 Putative uncharacterized protein n=1 Tax=Proteus... 71 1e-11 >UniRef50_P0AFY9 Protein seqA n=150 Tax=Gammaproteobacteria RepID=SEQA_ECOL6 Length = 181 Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/181 (100%), Positives = 181/181 (100%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK Sbjct: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY Sbjct: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT Sbjct: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 Query: 181 I 181 I Sbjct: 181 I 181 >UniRef50_A4W853 Negative regulator of replication initiation SeqA n=21 Tax=Gammaproteobacteria RepID=A4W853_ENT38 Length = 228 Score = 325 bits (834), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 156/181 (86%), Positives = 170/181 (93%), Gaps = 1/181 (0%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVDDELY+YIASHT+HIGESASDILRRMLKFSAASQPA PV+KEVR AS + EAK Sbjct: 49 MKTIEVDDELYAYIASHTRHIGESASDILRRMLKFSAASQPATPVSKEVR-ASNVVAEAK 107 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 V +KDKVRA+RELLLSDEYAEQK+AVNRF+L+L+TLYSLD +AFAEATESLHGRTRVY Sbjct: 108 TVAPVKDKVRAVRELLLSDEYAEQKKAVNRFLLVLTTLYSLDNKAFAEATESLHGRTRVY 167 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FAADEQTL++NGNQTKPK VPGTPYWVITNTNTGRK SM+EHIMQSMQFPAELIEKVCGT Sbjct: 168 FAADEQTLIQNGNQTKPKQVPGTPYWVITNTNTGRKRSMVEHIMQSMQFPAELIEKVCGT 227 Query: 181 I 181 I Sbjct: 228 I 228 >UniRef50_Q2NUN5 Negative modulator of replication initiation SeqA n=42 Tax=Gammaproteobacteria RepID=Q2NUN5_SODGM Length = 184 Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 117/181 (64%), Positives = 147/181 (81%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVD++LY +IA HT HIGESASDILRR+LKF+ A+ V +A+ +++ Sbjct: 1 MKTIEVDEDLYRFIAGHTLHIGESASDILRRLLKFTPGVDNASTPVVAVTMAAKPSEKSE 60 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 V+ + ++VRAMRELLLSD+YA Q++ V+RFML+L+TLY+L QAFA ATE+LHGRTR Y Sbjct: 61 SVRPLPERVRAMRELLLSDDYALQRKVVDRFMLVLTTLYTLSPQAFAGATETLHGRTRTY 120 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FA D +TLL++G+QTKPK VPGTPYWVITNTN+ RK SMIEHIM +MQFP ELIEKVCGT Sbjct: 121 FAGDRETLLQSGHQTKPKQVPGTPYWVITNTNSDRKRSMIEHIMLAMQFPTELIEKVCGT 180 Query: 181 I 181 + Sbjct: 181 L 181 >UniRef50_P44564 Protein seqA homolog n=24 Tax=Pasteurellaceae RepID=SEQA_HAEIN Length = 197 Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 95/193 (49%), Positives = 122/193 (63%), Gaps = 19/193 (9%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKF------------SAASQPAAPV--- 45 MK IEVD+ELY YIAS T+ IGESASDILRR+L ++A P Sbjct: 1 MKIIEVDEELYQYIASQTRSIGESASDILRRLLSLPVHTSIVNDLIITSAETDQKPKQAI 60 Query: 46 -TKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQ 104 KEV + + + + + I V ++ LL S E+ E+ +AV RF+ +L LY + + Sbjct: 61 NVKEVNIKT---TKKQSITAINQIVEKVQTLLNSTEFQEESKAVVRFLAILRVLYRTNPE 117 Query: 105 AFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIM 164 +FA+ATESL GRTRVYFA DE TLL GN TKPK +P TPYWVITNTN+GRK M+E M Sbjct: 118 SFAQATESLQGRTRVYFARDEATLLMAGNHTKPKQIPDTPYWVITNTNSGRKMLMLEGAM 177 Query: 165 QSMQFPAELIEKV 177 QSM+ P LI++V Sbjct: 178 QSMELPETLIDEV 190 >UniRef50_A0KIH3 SeqA protein n=7 Tax=Gammaproteobacteria RepID=A0KIH3_AERHH Length = 230 Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 94/181 (51%), Positives = 123/181 (67%), Gaps = 12/181 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIE+DD+LY YIAS T+HIGESASDILRR+L+ A+Q AAPVT+ V A P Sbjct: 62 MKTIELDDDLYFYIASQTRHIGESASDILRRLLE-QPANQ-AAPVTEPVTTAQP------ 113 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 T+ D + + LL S E ++++++NRFM +LSTLY D F +ATE + GR RVY Sbjct: 114 --HTVADAM-GLEALLDSGELQKEEKSINRFMQVLSTLYRDDPVGFTQATE-IKGRKRVY 169 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 F+ D L +G+ TKPK VP TP+WVITNTNT RK +M+ +M SM + E+I +VCG Sbjct: 170 FSRDPDALRASGSTTKPKPVPETPFWVITNTNTSRKQNMVAQLMTSMGYGDEVIARVCGA 229 Query: 181 I 181 I Sbjct: 230 I 230 >UniRef50_A4SPL2 SeqA protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SPL2_AERS4 Length = 169 Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 84/181 (46%), Positives = 115/181 (63%), Gaps = 12/181 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIE+DD+LY YIAS T+HIGESASDILRR+L+ P V VA P + Sbjct: 1 MKTIELDDDLYFYIASQTRHIGESASDILRRLLE--------QPTHITVPVAEPVDL--- 49 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 P ++ ++ LL S E ++++++NRFM +LSTLY + F +ATE + GR RVY Sbjct: 50 PQPSVATDAMGLQALLDSGELQKEEKSINRFMQVLSTLYRDNPVGFTQATE-IKGRKRVY 108 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 F+ D + L +G+ TKPK VP TP+WVI+NTNT RK +M+ +M SM + LI +V Sbjct: 109 FSRDPEALRASGSTTKPKPVPETPFWVISNTNTSRKQNMVAQMMASMGYDEALIAQVSSA 168 Query: 181 I 181 I Sbjct: 169 I 169 >UniRef50_A3N0B4 DNA replication inhibitor protein n=9 Tax=Pasteurellaceae RepID=A3N0B4_ACTP2 Length = 186 Score = 155 bits (391), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 79/181 (43%), Positives = 118/181 (65%), Gaps = 4/181 (2%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTK----EVRVASPAI 56 MKTIEVDDELY YIAS T+ IGESASDILRR+L+ ++ QP V + E++ + Sbjct: 1 MKTIEVDDELYHYIASRTQAIGESASDILRRLLRLPSSPQPFVLVQQNTIDELKELAKPK 60 Query: 57 VEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGR 116 +AK I+ V+ + ++L SD + + + V RF++LLS L+ +AQ F +ATE + G Sbjct: 61 AKAKKEDLIEKAVQKVEKVLKSDVFINESKNVARFLMLLSALHHANAQGFEQATEVVTGT 120 Query: 117 TRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEK 176 R YF+ E+ LL +G+ K K +P +P+WV+TN NT RK ++ +M+SM+ P +IE+ Sbjct: 121 ERTYFSKSEEALLSHGSSVKAKQIPDSPFWVVTNNNTARKGLILTGVMESMELPQHIIER 180 Query: 177 V 177 V Sbjct: 181 V 181 >UniRef50_A6FER2 SeqA protein n=1 Tax=Moritella sp. PE36 RepID=A6FER2_9GAMM Length = 206 Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 27/207 (13%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFS-----------AASQPAAPV---T 46 MKTIE++D+LY YIAS TK IGESASDILRR+L S A Q T Sbjct: 1 MKTIELEDDLYRYIASQTKDIGESASDILRRLLDVSTDVSADLTNVEALQQHVVDTNSET 60 Query: 47 KEVRVASPAIVEAKPVK---TIKDKVR---------AMRELLLSDEYAEQKRAVNRFMLL 94 K+ SP IVE PV + +V ++ +L+ + ++ E +V +F+ + Sbjct: 61 KQTVTKSPVIVEPTPVSAPIVVDTEVEVVSHSTLPTSIAKLIKNKKFKETTVSVTKFIQI 120 Query: 95 LSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTG 154 LS LY+ + + F AT+ + GR R+YFA E LL GN TKP+H+ TPYWVITNTNTG Sbjct: 121 LSVLYAENPKEFDSATD-IKGRKRIYFAKSESELLSAGNTTKPRHIEHTPYWVITNTNTG 179 Query: 155 RKCSMIEHIMQSMQFPAELIEKVCGTI 181 RK ++I +M M + LI+ V +I Sbjct: 180 RKRNIITQLMAEMGYTHALIDAVSQSI 206 >UniRef50_C6RXJ0 SeqA protein n=1 Tax=Vibrio cholera CIRS 101 RepID=C6RXJ0_VIBCH Length = 142 Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/136 (54%), Positives = 93/136 (68%), Gaps = 8/136 (5%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVT--KEVRVASPAIVE 58 MKTIEVD++LY YIAS T HIGESASDILRR+L AAP K + V+ A + Sbjct: 1 MKTIEVDEDLYRYIASQTLHIGESASDILRRLLNVDGELATAAPAAEPKGIVVSKDAAFD 60 Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 K D V+AMR LL+SDE+A K A++RFML+LSTL+ +D+ +F+EAT GR R Sbjct: 61 TKI-----DGVKAMRSLLISDEFAGLKNAIDRFMLILSTLHRIDSASFSEAT-MFKGRKR 114 Query: 119 VYFAADEQTLLKNGNQ 134 VYFA +EQTLL +G Q Sbjct: 115 VYFADNEQTLLASGQQ 130 >UniRef50_Q15TS1 Negative regulator of replication initiation n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TS1_PSEA6 Length = 174 Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 14/171 (8%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE++D+LY+YIAS T+HIGE+ASDILRR++ P V K V A P+ K Sbjct: 1 MKNIEIEDDLYAYIASQTQHIGETASDILRRLV------MPENTVVKTVVAAKPSATTKK 54 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 PV + ++ +DE +E + V RF+ +LS L S+ F E +L GR RVY Sbjct: 55 PVGDVFSQIT-------TDELSEYPKMVERFLKILSVLESMHGAQFDEVL-TLSGRNRVY 106 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPA 171 FA D++TLL+ + T PK + + +WV+TN NT +K S+I+ + + + + A Sbjct: 107 FAKDKETLLQASSVTNPKQIGESTFWVMTNNNTAKKASLIKEVAEVLGYNA 157 >UniRef50_Q5QXP4 Negative regulator of replication initiation n=1 Tax=Idiomarina loihiensis RepID=Q5QXP4_IDILO Length = 160 Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 21/177 (11%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK I++DD+LY+YIASHT+ IGESASDILRR+L ++ S+P A E Sbjct: 1 MKRIDIDDDLYTYIASHTRQIGESASDILRRLLDVNS-SEPEADSKSE------------ 47 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 P +++ ++ L + QK V RF+ +LS LY F++ + + GR R Y Sbjct: 48 PTESVFNR-------LNEQDVRIQKSVVARFLYILSMLYRCHPSEFSQVLD-IRGRDRQY 99 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKV 177 FA E+ LL +GN T PK +P +P+WVITNTNT +K +M+ + + + + + EK+ Sbjct: 100 FARSEEALLTSGNSTNPKQIPDSPFWVITNTNTTKKKAMLTQVAEKLGYQSADAEKI 156 >UniRef50_A4CCC2 SeqA protein n=2 Tax=Alteromonadales RepID=A4CCC2_9GAMM Length = 180 Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 5/177 (2%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVR--VASPAIVE 58 MK IE+DDELY YIAS+T+ IGESAS ILRR+L S S+ P+ + V + + E Sbjct: 1 MKKIEIDDELYQYIASNTQSIGESASQILRRLLNLSQ-SESLPPIAEPVETIIQDDVLPE 59 Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 +P + K +L +E A QK AV RF+ +L+ Y + F + + GR R Sbjct: 60 QQPQAVVPYKGNVFN-ILNKEELAMQKGAVGRFLFILAAFYRTHKKDFKIVLD-IKGRDR 117 Query: 119 VYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIE 175 VYFA+ ++ LL+ GN PK++P + YWV+TN+NT RK M+ + S+ + E E Sbjct: 118 VYFASSKEELLEGGNSMNPKNIPDSTYWVMTNSNTTRKKMMLHEVAISLGYTNEQAE 174 >UniRef50_Q485E3 SeqA protein n=3 Tax=Alteromonadales RepID=Q485E3_COLP3 Length = 200 Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 21/197 (10%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSA--------ASQPAAPVT------ 46 MK IE+D+ELY YIA++T+ IGESAS ILRR+L ++P+ V Sbjct: 1 MKNIEIDEELYQYIATNTQFIGESASAILRRLLNLGVEAKLETVTVNEPSDVVEVNILPE 60 Query: 47 ---KEVRVASPAIVEAKP---VKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYS 100 K V++ + + E K VK + + + +E A Q+ AV RF+L+L+ LY Sbjct: 61 SEEKAVKIETAEVKEPKSKAVVKVTAESHETVFNFINKEELAMQRGAVGRFLLILAALYR 120 Query: 101 LDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI 160 F T+ + GR R+YFA E L ++G+ TKP+ +P +P+WVITN+NT RK M+ Sbjct: 121 AHPDQFGVVTD-ISGRDRLYFANSENKLAESGSSTKPRQIPESPFWVITNSNTTRKKMML 179 Query: 161 EHIMQSMQFPAELIEKV 177 S+ + +EK+ Sbjct: 180 TKASISLGYSDSDVEKI 196 >UniRef50_A1STA5 Negative regulator of replication initiation SeqA n=2 Tax=Psychromonas RepID=A1STA5_PSYIN Length = 207 Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 109/203 (53%), Gaps = 26/203 (12%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAAS-QPAAPVTKEVRVASP----- 54 MK IE++D+LY YI ++ + GE+ S ILRR+L AS A P+T V ++P Sbjct: 1 MKNIEIEDDLYKYILANIEAFGETPSQILRRLLSLPNASPDNATPITSSVTPSAPRQEAV 60 Query: 55 ----AIVEAKPVKTIKDKVRAMRE--------LLLSDEYAEQKRAVNRFMLLLSTLYSLD 102 ++ EA K + ++ E L S+ + + N+FM+LL+T+Y + Sbjct: 61 NDESSVFEAVTPKVLDRANISLPEPLAHGVNALFDSEVFKTEAVVTNKFMMLLATMYYEN 120 Query: 103 AQAFAEATESLHGRTRVYFAADEQTLLKNGNQ--------TKPKHVPGTPYWVITNTNTG 154 AF +A + GRTR Y + LL ++ +KP+++P TP+WVITN NTG Sbjct: 121 KNAFEDAADKTKGRTRDYLGQNLNALLAADSEEEQNFFKASKPRNIPHTPFWVITNANTG 180 Query: 155 RKCSMIEHIMQSMQFPAELIEKV 177 RK +I +M SM +P LIE++ Sbjct: 181 RKRIIITQMMASMGYPHYLIERI 203 >UniRef50_B0TUS0 SeqA family protein n=17 Tax=Shewanella RepID=B0TUS0_SHEHH Length = 206 Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/191 (38%), Positives = 103/191 (53%), Gaps = 19/191 (9%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAAS-QPAAPVTKEVRVASPAIVEA 59 MK IEVD+ELY +IAS T+HIGESASDILRR+L S AP +E+ S V Sbjct: 21 MKYIEVDEELYRHIASKTEHIGESASDILRRILGLQVESVVQDAP--EEISHPSLERVSP 78 Query: 60 KPVKTIK-------DKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATES 112 KPVK K V L+ +D A QK AV RF+ +L T++ F + + Sbjct: 79 KPVKVAKVITKMTSTAVSDFTSLIDADVLAAQKGAVGRFLFILDTVHRASPVQFEQVLQ- 137 Query: 113 LHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFP-- 170 + GR R+YFA + LLK PK + + +WV TN NT +K +++ ++ +QF Sbjct: 138 IQGRDRLYFATSKDALLKASKSANPKEIGQSGFWVTTNNNTAKKRTILSEVL--LQFGTD 195 Query: 171 ----AELIEKV 177 ++IEK+ Sbjct: 196 EAQVTDIIEKI 206 >UniRef50_Q082Q5 SeqA protein n=2 Tax=Shewanella RepID=Q082Q5_SHEFN Length = 208 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 35/203 (17%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+D+ELY +IAS T+ IGESASDILRR+L S + V+ ++ P++ Sbjct: 1 MKYIEIDEELYRFIASKTERIGESASDILRRLLNLSVEN---VDVSLPTDISHPSLESQS 57 Query: 61 PVKT--IKDKVRAMRELLLSDE-----------------------------YAEQKRAVN 89 PV + D+ +A E +++D+ ++QK AV Sbjct: 58 PVNRHPVFDQAKAAVEKVIADQNSANEHYPVDEDIASSTSIDFDAMVSQHLLSQQKGAVG 117 Query: 90 RFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVIT 149 RFM LLS+L S F + ++ G+ R+YFA +Q LL + + PK + + +WV T Sbjct: 118 RFMYLLSSLESTAGSDFDKVL-NVQGKGRLYFARSKQALLNSSKSSNPKEIASSGFWVTT 176 Query: 150 NTNTGRKCSMIEHIMQSMQFPAE 172 N NT +K +++ +++ + +E Sbjct: 177 NNNTAKKQTILTEVLEHLGCDSE 199 >UniRef50_A3QE89 SeqA family protein n=1 Tax=Shewanella loihica PV-4 RepID=A3QE89_SHELP Length = 176 Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 15/186 (8%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFS----AASQPAAPVTKEVRVASPAI 56 MK IE+D+ELY +IAS T+ IGESAS+ILRR+L A QP +++ P + Sbjct: 1 MKYIEIDEELYRHIASKTERIGESASEILRRLLGLDVETVAMEQPK-------QISQPGL 53 Query: 57 VEAKPVKTIKDKVRAMRELLLS-DEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHG 115 K V E L+ A+QK AV RF+ L +Y F + + + G Sbjct: 54 --DKEVAQTHQAASIDPETLIDKGALAQQKGAVGRFLFTLEAIYKATPNQFDQVLQ-IQG 110 Query: 116 RTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIE 175 R R+YFA +++LLK PK + + +WV TN NT +K +++ ++ + IE Sbjct: 111 RDRLYFATSKESLLKASKSANPKEIGNSGFWVTTNNNTAKKRTILSEVLGQFGVQEKQIE 170 Query: 176 KVCGTI 181 + G I Sbjct: 171 SIIGHI 176 >UniRef50_B6XBX2 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XBX2_9ENTR Length = 101 Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 6/91 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVD+ELY YIASHT+HIGESASDILRRML F +A QP P KEV + +P + Sbjct: 1 MKTIEVDEELYRYIASHTQHIGESASDILRRMLNFKSAQQP-VPAAKEVNL-TPLAPQDA 58 Query: 61 PVKTIK----DKVRAMRELLLSDEYAEQKRA 87 PV K + VR +RELLLSD Y +K++ Sbjct: 59 PVMNTKVVAQNPVRVIRELLLSDAYDGKKQS 89 >UniRef50_B4RST7 SeqA protein n=2 Tax=Alteromonas macleodii RepID=B4RST7_ALTMD Length = 272 Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 76/120 (63%), Gaps = 1/120 (0%) Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 A V+T R + + + D A + V++F+ +LS + L+A+ F+ + ES+ G+ R Sbjct: 146 ASSVETETHNKRDILDAVSKDALATFTKRVDQFLFVLSAAHKLNAENFS-SVESIKGKNR 204 Query: 119 VYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVC 178 YFA ++ LL+NG+ T PK +P +P+WV+TN NT +K +M+E +++++ + +++E V Sbjct: 205 TYFATSKEALLENGSSTNPKAIPDSPFWVVTNNNTAKKTNMLEQVLRNLGYQPDVVETVT 264 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 25/33 (75%), Positives = 31/33 (93%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRML 33 MK+IE+DD+LY++IAS TKHIGESAS ILRR+L Sbjct: 10 MKSIEIDDDLYAFIASQTKHIGESASQILRRLL 42 >UniRef50_Q12MQ7 SeqA protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12MQ7_SHEDO Length = 253 Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 72/252 (28%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRML--------------------------- 33 MK IEVD+ELY +IAS T+ IGESASDILRR+L Sbjct: 1 MKYIEVDEELYRFIASKTERIGESASDILRRLLTLPVDTVTPFEPNAIDEPSLDVAHHQA 60 Query: 34 -KFSAASQ-----------PAA---PVTKEVRVASP--------------------AIVE 58 F+A++Q P+A P + + A P A + Sbjct: 61 SNFAASNQEQQTGHGHAGEPSAVQTPESNDYAKAQPHSSGYQPGQLEGHKSEPQTLAQLN 120 Query: 59 AKPVKTIKDKVRAMREL----LLSDEYAEQKR-AVNRFMLLLSTLYSLDAQAFAEATESL 113 ++P+ + A ++ L+++ Q++ AV RFM LL L +L F + + Sbjct: 121 SQPLAVGQSSQSATSQVDFNALVNEHLLSQQKGAVGRFMWLLEGLAALAPSQFNKVL-LV 179 Query: 114 HGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQ----F 169 G+ R+YFA + LL + PK + T YWV TN NT +K +++ ++ + Sbjct: 180 QGKGRLYFARSKDELLASSASANPKEIGTTGYWVTTNNNTAKKQAILVEVLTKLHCDETL 239 Query: 170 PAELIEKVCGTI 181 + + +++C + Sbjct: 240 ASAIADRICDKV 251 >UniRef50_C0B295 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B295_9ENTR Length = 72 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/62 (61%), Positives = 44/62 (70%), Gaps = 2/62 (3%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAI-VEA 59 MK IE+DDELY YIAS T+HIGESASDILRR+LK A QP PV V +P + EA Sbjct: 1 MKKIEIDDELYRYIASETRHIGESASDILRRLLKLD-AKQPVQPVVVTESVQAPVMKQEA 59 Query: 60 KP 61 +P Sbjct: 60 EP 61 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFY9 Protein seqA n=150 Tax=Gammaproteobacteria RepID... 277 1e-73 UniRef50_A4W853 Negative regulator of replication initiation Seq... 273 2e-72 UniRef50_Q2NUN5 Negative modulator of replication initiation Seq... 253 2e-66 UniRef50_A0KIH3 SeqA protein n=7 Tax=Gammaproteobacteria RepID=A... 241 1e-62 UniRef50_A4SPL2 SeqA protein n=1 Tax=Aeromonas salmonicida subsp... 223 2e-57 UniRef50_A4CCC2 SeqA protein n=2 Tax=Alteromonadales RepID=A4CCC... 218 8e-56 UniRef50_A3N0B4 DNA replication inhibitor protein n=9 Tax=Pasteu... 216 3e-55 UniRef50_B0TUS0 SeqA family protein n=17 Tax=Shewanella RepID=B0... 209 4e-53 UniRef50_Q5QXP4 Negative regulator of replication initiation n=1... 209 5e-53 UniRef50_A3QE89 SeqA family protein n=1 Tax=Shewanella loihica P... 208 5e-53 UniRef50_P44564 Protein seqA homolog n=24 Tax=Pasteurellaceae Re... 208 7e-53 UniRef50_Q485E3 SeqA protein n=3 Tax=Alteromonadales RepID=Q485E... 204 1e-51 UniRef50_A1STA5 Negative regulator of replication initiation Seq... 201 1e-50 UniRef50_A6FER2 SeqA protein n=1 Tax=Moritella sp. PE36 RepID=A6... 199 4e-50 UniRef50_Q15TS1 Negative regulator of replication initiation n=1... 195 6e-49 UniRef50_Q082Q5 SeqA protein n=2 Tax=Shewanella RepID=Q082Q5_SHEFN 195 6e-49 UniRef50_Q12MQ7 SeqA protein n=1 Tax=Shewanella denitrificans OS... 176 5e-43 UniRef50_C6RXJ0 SeqA protein n=1 Tax=Vibrio cholera CIRS 101 Rep... 155 8e-37 UniRef50_B4RST7 SeqA protein n=2 Tax=Alteromonas macleodii RepID... 145 5e-34 UniRef50_B6XBX2 Putative uncharacterized protein n=1 Tax=Provide... 94 2e-18 UniRef50_C0B295 Putative uncharacterized protein n=1 Tax=Proteus... 77 3e-13 Sequences not found previously or not previously below threshold: UniRef50_B1ZYS0 Putative uncharacterized protein n=1 Tax=Opitutu... 86 6e-16 UniRef50_B5JFJ7 Putative uncharacterized protein n=1 Tax=Verruco... 70 3e-11 UniRef50_B5IG47 Type I restriction enzyme R protein N terminal d... 50 3e-05 UniRef50_A5UQD9 Restriction endonuclease n=1 Tax=Roseiflexus sp.... 49 6e-05 UniRef50_A7HKE1 Putative uncharacterized protein n=1 Tax=Fervido... 47 3e-04 UniRef50_B0P191 Putative uncharacterized protein n=1 Tax=Clostri... 43 0.005 UniRef50_B4B635 Putative uncharacterized protein n=1 Tax=Cyanoth... 39 0.083 >UniRef50_P0AFY9 Protein seqA n=150 Tax=Gammaproteobacteria RepID=SEQA_ECOL6 Length = 181 Score = 277 bits (708), Expect = 1e-73, Method: Composition-based stats. Identities = 181/181 (100%), Positives = 181/181 (100%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK Sbjct: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY Sbjct: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT Sbjct: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 Query: 181 I 181 I Sbjct: 181 I 181 >UniRef50_A4W853 Negative regulator of replication initiation SeqA n=21 Tax=Gammaproteobacteria RepID=A4W853_ENT38 Length = 228 Score = 273 bits (699), Expect = 2e-72, Method: Composition-based stats. Identities = 156/181 (86%), Positives = 170/181 (93%), Gaps = 1/181 (0%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVDDELY+YIASHT+HIGESASDILRRMLKFSAASQPA PV+KEVR AS + EAK Sbjct: 49 MKTIEVDDELYAYIASHTRHIGESASDILRRMLKFSAASQPATPVSKEVR-ASNVVAEAK 107 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 V +KDKVRA+RELLLSDEYAEQK+AVNRF+L+L+TLYSLD +AFAEATESLHGRTRVY Sbjct: 108 TVAPVKDKVRAVRELLLSDEYAEQKKAVNRFLLVLTTLYSLDNKAFAEATESLHGRTRVY 167 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FAADEQTL++NGNQTKPK VPGTPYWVITNTNTGRK SM+EHIMQSMQFPAELIEKVCGT Sbjct: 168 FAADEQTLIQNGNQTKPKQVPGTPYWVITNTNTGRKRSMVEHIMQSMQFPAELIEKVCGT 227 Query: 181 I 181 I Sbjct: 228 I 228 >UniRef50_Q2NUN5 Negative modulator of replication initiation SeqA n=42 Tax=Gammaproteobacteria RepID=Q2NUN5_SODGM Length = 184 Score = 253 bits (647), Expect = 2e-66, Method: Composition-based stats. Identities = 117/181 (64%), Positives = 147/181 (81%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVD++LY +IA HT HIGESASDILRR+LKF+ A+ V +A+ +++ Sbjct: 1 MKTIEVDEDLYRFIAGHTLHIGESASDILRRLLKFTPGVDNASTPVVAVTMAAKPSEKSE 60 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 V+ + ++VRAMRELLLSD+YA Q++ V+RFML+L+TLY+L QAFA ATE+LHGRTR Y Sbjct: 61 SVRPLPERVRAMRELLLSDDYALQRKVVDRFMLVLTTLYTLSPQAFAGATETLHGRTRTY 120 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FA D +TLL++G+QTKPK VPGTPYWVITNTN+ RK SMIEHIM +MQFP ELIEKVCGT Sbjct: 121 FAGDRETLLQSGHQTKPKQVPGTPYWVITNTNSDRKRSMIEHIMLAMQFPTELIEKVCGT 180 Query: 181 I 181 + Sbjct: 181 L 181 >UniRef50_A0KIH3 SeqA protein n=7 Tax=Gammaproteobacteria RepID=A0KIH3_AERHH Length = 230 Score = 241 bits (614), Expect = 1e-62, Method: Composition-based stats. Identities = 93/181 (51%), Positives = 121/181 (66%), Gaps = 12/181 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIE+DD+LY YIAS T+HIGESASDILRR+L+ A AAPVT+ V A P Sbjct: 62 MKTIELDDDLYFYIASQTRHIGESASDILRRLLEQPANQ--AAPVTEPVTTAQP------ 113 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 T+ D + + LL S E ++++++NRFM +LSTLY D F +ATE + GR RVY Sbjct: 114 --HTVADAM-GLEALLDSGELQKEEKSINRFMQVLSTLYRDDPVGFTQATE-IKGRKRVY 169 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 F+ D L +G+ TKPK VP TP+WVITNTNT RK +M+ +M SM + E+I +VCG Sbjct: 170 FSRDPDALRASGSTTKPKPVPETPFWVITNTNTSRKQNMVAQLMTSMGYGDEVIARVCGA 229 Query: 181 I 181 I Sbjct: 230 I 230 >UniRef50_A4SPL2 SeqA protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SPL2_AERS4 Length = 169 Score = 223 bits (568), Expect = 2e-57, Method: Composition-based stats. Identities = 84/181 (46%), Positives = 113/181 (62%), Gaps = 12/181 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIE+DD+LY YIAS T+HIGESASDILRR+L P V VA P Sbjct: 1 MKTIELDDDLYFYIASQTRHIGESASDILRRLL--------EQPTHITVPVAEPV---DL 49 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 P ++ ++ LL S E ++++++NRFM +LSTLY + F +ATE + GR RVY Sbjct: 50 PQPSVATDAMGLQALLDSGELQKEEKSINRFMQVLSTLYRDNPVGFTQATE-IKGRKRVY 108 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 F+ D + L +G+ TKPK VP TP+WVI+NTNT RK +M+ +M SM + LI +V Sbjct: 109 FSRDPEALRASGSTTKPKPVPETPFWVISNTNTSRKQNMVAQMMASMGYDEALIAQVSSA 168 Query: 181 I 181 I Sbjct: 169 I 169 >UniRef50_A4CCC2 SeqA protein n=2 Tax=Alteromonadales RepID=A4CCC2_9GAMM Length = 180 Score = 218 bits (555), Expect = 8e-56, Method: Composition-based stats. Identities = 71/183 (38%), Positives = 106/183 (57%), Gaps = 5/183 (2%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVR--VASPAIVE 58 MK IE+DDELY YIAS+T+ IGESAS ILRR+L S S+ P+ + V + + E Sbjct: 1 MKKIEIDDELYQYIASNTQSIGESASQILRRLLNLSQ-SESLPPIAEPVETIIQDDVLPE 59 Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 +P + K + +L +E A QK AV RF+ +L+ Y + F + + GR R Sbjct: 60 QQPQAVVPYKGN-VFNILNKEELAMQKGAVGRFLFILAAFYRTHKKDFKIVLD-IKGRDR 117 Query: 119 VYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVC 178 VYFA+ ++ LL+ GN PK++P + YWV+TN+NT RK M+ + S+ + E E + Sbjct: 118 VYFASSKEELLEGGNSMNPKNIPDSTYWVMTNSNTTRKKMMLHEVAISLGYTNEQAEIIR 177 Query: 179 GTI 181 + Sbjct: 178 DYL 180 >UniRef50_A3N0B4 DNA replication inhibitor protein n=9 Tax=Pasteurellaceae RepID=A3N0B4_ACTP2 Length = 186 Score = 216 bits (550), Expect = 3e-55, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 118/181 (65%), Gaps = 4/181 (2%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTK----EVRVASPAI 56 MKTIEVDDELY YIAS T+ IGESASDILRR+L+ ++ QP V + E++ + Sbjct: 1 MKTIEVDDELYHYIASRTQAIGESASDILRRLLRLPSSPQPFVLVQQNTIDELKELAKPK 60 Query: 57 VEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGR 116 +AK I+ V+ + ++L SD + + + V RF++LLS L+ +AQ F +ATE + G Sbjct: 61 AKAKKEDLIEKAVQKVEKVLKSDVFINESKNVARFLMLLSALHHANAQGFEQATEVVTGT 120 Query: 117 TRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEK 176 R YF+ E+ LL +G+ K K +P +P+WV+TN NT RK ++ +M+SM+ P +IE+ Sbjct: 121 ERTYFSKSEEALLSHGSSVKAKQIPDSPFWVVTNNNTARKGLILTGVMESMELPQHIIER 180 Query: 177 V 177 V Sbjct: 181 V 181 >UniRef50_B0TUS0 SeqA family protein n=17 Tax=Shewanella RepID=B0TUS0_SHEHH Length = 206 Score = 209 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 9/188 (4%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IEVD+ELY +IAS T+HIGESASDILRR+L S +E+ S V K Sbjct: 21 MKYIEVDEELYRHIASKTEHIGESASDILRRILGLQVESV-VQDAPEEISHPSLERVSPK 79 Query: 61 PVKT-------IKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESL 113 PVK V L+ +D A QK AV RF+ +L T++ F + + + Sbjct: 80 PVKVAKVITKMTSTAVSDFTSLIDADVLAAQKGAVGRFLFILDTVHRASPVQFEQVLQ-I 138 Query: 114 HGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAEL 173 GR R+YFA + LLK PK + + +WV TN NT +K +++ ++ Sbjct: 139 QGRDRLYFATSKDALLKASKSANPKEIGQSGFWVTTNNNTAKKRTILSEVLLQFGTDEAQ 198 Query: 174 IEKVCGTI 181 + + I Sbjct: 199 VTDIIEKI 206 >UniRef50_Q5QXP4 Negative regulator of replication initiation n=1 Tax=Idiomarina loihiensis RepID=Q5QXP4_IDILO Length = 160 Score = 209 bits (531), Expect = 5e-53, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 21/177 (11%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK I++DD+LY+YIASHT+ IGESASDILRR+L ++ S+P A E Sbjct: 1 MKRIDIDDDLYTYIASHTRQIGESASDILRRLLDVNS-SEPEADSKSE------------ 47 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 P +++ ++ L + QK V RF+ +LS LY F++ + + GR R Y Sbjct: 48 PTESVFNR-------LNEQDVRIQKSVVARFLYILSMLYRCHPSEFSQVLD-IRGRDRQY 99 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKV 177 FA E+ LL +GN T PK +P +P+WVITNTNT +K +M+ + + + + + EK+ Sbjct: 100 FARSEEALLTSGNSTNPKQIPDSPFWVITNTNTTKKKAMLTQVAEKLGYQSADAEKI 156 >UniRef50_A3QE89 SeqA family protein n=1 Tax=Shewanella loihica PV-4 RepID=A3QE89_SHELP Length = 176 Score = 208 bits (530), Expect = 5e-53, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 7/182 (3%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+D+ELY +IAS T+ IGESAS+ILRR+L + + + +++ P + K Sbjct: 1 MKYIEIDEELYRHIASKTERIGESASEILRRLLGLDVET---VAMEQPKQISQPGL--DK 55 Query: 61 PVKTIKDKVRAMRE-LLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRV 119 V E L+ A+QK AV RF+ L +Y F + + + GR R+ Sbjct: 56 EVAQTHQAASIDPETLIDKGALAQQKGAVGRFLFTLEAIYKATPNQFDQVLQ-IQGRDRL 114 Query: 120 YFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCG 179 YFA +++LLK PK + + +WV TN NT +K +++ ++ + IE + G Sbjct: 115 YFATSKESLLKASKSANPKEIGNSGFWVTTNNNTAKKRTILSEVLGQFGVQEKQIESIIG 174 Query: 180 TI 181 I Sbjct: 175 HI 176 >UniRef50_P44564 Protein seqA homolog n=24 Tax=Pasteurellaceae RepID=SEQA_HAEIN Length = 197 Score = 208 bits (530), Expect = 7e-53, Method: Composition-based stats. Identities = 92/190 (48%), Positives = 118/190 (62%), Gaps = 13/190 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFS-------------AASQPAAPVTK 47 MK IEVD+ELY YIAS T+ IGESASDILRR+L A + Sbjct: 1 MKIIEVDEELYQYIASQTRSIGESASDILRRLLSLPVHTSIVNDLIITSAETDQKPKQAI 60 Query: 48 EVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFA 107 V+ + + + + I V ++ LL S E+ E+ +AV RF+ +L LY + ++FA Sbjct: 61 NVKEVNIKTTKKQSITAINQIVEKVQTLLNSTEFQEESKAVVRFLAILRVLYRTNPESFA 120 Query: 108 EATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSM 167 +ATESL GRTRVYFA DE TLL GN TKPK +P TPYWVITNTN+GRK M+E MQSM Sbjct: 121 QATESLQGRTRVYFARDEATLLMAGNHTKPKQIPDTPYWVITNTNSGRKMLMLEGAMQSM 180 Query: 168 QFPAELIEKV 177 + P LI++V Sbjct: 181 ELPETLIDEV 190 >UniRef50_Q485E3 SeqA protein n=3 Tax=Alteromonadales RepID=Q485E3_COLP3 Length = 200 Score = 204 bits (519), Expect = 1e-51, Method: Composition-based stats. Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 21/197 (10%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAA--------SQPAAPVT------ 46 MK IE+D+ELY YIA++T+ IGESAS ILRR+L ++P+ V Sbjct: 1 MKNIEIDEELYQYIATNTQFIGESASAILRRLLNLGVEAKLETVTVNEPSDVVEVNILPE 60 Query: 47 ---KEVRVASPAIVEAKP---VKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYS 100 K V++ + + E K VK + + + +E A Q+ AV RF+L+L+ LY Sbjct: 61 SEEKAVKIETAEVKEPKSKAVVKVTAESHETVFNFINKEELAMQRGAVGRFLLILAALYR 120 Query: 101 LDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI 160 F T+ + GR R+YFA E L ++G+ TKP+ +P +P+WVITN+NT RK M+ Sbjct: 121 AHPDQFGVVTD-ISGRDRLYFANSENKLAESGSSTKPRQIPESPFWVITNSNTTRKKMML 179 Query: 161 EHIMQSMQFPAELIEKV 177 S+ + +EK+ Sbjct: 180 TKASISLGYSDSDVEKI 196 >UniRef50_A1STA5 Negative regulator of replication initiation SeqA n=2 Tax=Psychromonas RepID=A1STA5_PSYIN Length = 207 Score = 201 bits (510), Expect = 1e-50, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 110/207 (53%), Gaps = 26/207 (12%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAAS-QPAAPVTKEVRVASP----- 54 MK IE++D+LY YI ++ + GE+ S ILRR+L AS A P+T V ++P Sbjct: 1 MKNIEIEDDLYKYILANIEAFGETPSQILRRLLSLPNASPDNATPITSSVTPSAPRQEAV 60 Query: 55 ----AIVEAKPVKTIKDKVRAMRE--------LLLSDEYAEQKRAVNRFMLLLSTLYSLD 102 ++ EA K + ++ E L S+ + + N+FM+LL+T+Y + Sbjct: 61 NDESSVFEAVTPKVLDRANISLPEPLAHGVNALFDSEVFKTEAVVTNKFMMLLATMYYEN 120 Query: 103 AQAFAEATESLHGRTRVYFAADEQTLLKNGNQ--------TKPKHVPGTPYWVITNTNTG 154 AF +A + GRTR Y + LL ++ +KP+++P TP+WVITN NTG Sbjct: 121 KNAFEDAADKTKGRTRDYLGQNLNALLAADSEEEQNFFKASKPRNIPHTPFWVITNANTG 180 Query: 155 RKCSMIEHIMQSMQFPAELIEKVCGTI 181 RK +I +M SM +P LIE++ I Sbjct: 181 RKRIIITQMMASMGYPHYLIERIKEEI 207 >UniRef50_A6FER2 SeqA protein n=1 Tax=Moritella sp. PE36 RepID=A6FER2_9GAMM Length = 206 Score = 199 bits (506), Expect = 4e-50, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 27/207 (13%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFS-----------AASQPAAPV---T 46 MKTIE++D+LY YIAS TK IGESASDILRR+L S A Q T Sbjct: 1 MKTIELEDDLYRYIASQTKDIGESASDILRRLLDVSTDVSADLTNVEALQQHVVDTNSET 60 Query: 47 KEVRVASPAIVEAKPVK---TIKDKVR---------AMRELLLSDEYAEQKRAVNRFMLL 94 K+ SP IVE PV + +V ++ +L+ + ++ E +V +F+ + Sbjct: 61 KQTVTKSPVIVEPTPVSAPIVVDTEVEVVSHSTLPTSIAKLIKNKKFKETTVSVTKFIQI 120 Query: 95 LSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTG 154 LS LY+ + + F AT+ + GR R+YFA E LL GN TKP+H+ TPYWVITNTNTG Sbjct: 121 LSVLYAENPKEFDSATD-IKGRKRIYFAKSESELLSAGNTTKPRHIEHTPYWVITNTNTG 179 Query: 155 RKCSMIEHIMQSMQFPAELIEKVCGTI 181 RK ++I +M M + LI+ V +I Sbjct: 180 RKRNIITQLMAEMGYTHALIDAVSQSI 206 >UniRef50_Q15TS1 Negative regulator of replication initiation n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TS1_PSEA6 Length = 174 Score = 195 bits (495), Expect = 6e-49, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 106/177 (59%), Gaps = 14/177 (7%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE++D+LY+YIAS T+HIGE+ASDILRR++ P V K V A P+ K Sbjct: 1 MKNIEIEDDLYAYIASQTQHIGETASDILRRLV------MPENTVVKTVVAAKPSATTKK 54 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 PV + ++ +DE +E + V RF+ +LS L S+ F E +L GR RVY Sbjct: 55 PVGDVFSQIT-------TDELSEYPKMVERFLKILSVLESMHGAQFDEVL-TLSGRNRVY 106 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKV 177 FA D++TLL+ + T PK + + +WV+TN NT +K S+I+ + + + + A +++ Sbjct: 107 FAKDKETLLQASSVTNPKQIGESTFWVMTNNNTAKKASLIKEVAEVLGYNANDGQRL 163 >UniRef50_Q082Q5 SeqA protein n=2 Tax=Shewanella RepID=Q082Q5_SHEFN Length = 208 Score = 195 bits (495), Expect = 6e-49, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 35/212 (16%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+D+ELY +IAS T+ IGESASDILRR+L S + V+ ++ P++ Sbjct: 1 MKYIEIDEELYRFIASKTERIGESASDILRRLLNLSVEN---VDVSLPTDISHPSLESQS 57 Query: 61 PV--KTIKDKVRAMRELLLSDE-----------------------------YAEQKRAVN 89 PV + D+ +A E +++D+ ++QK AV Sbjct: 58 PVNRHPVFDQAKAAVEKVIADQNSANEHYPVDEDIASSTSIDFDAMVSQHLLSQQKGAVG 117 Query: 90 RFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVIT 149 RFM LLS+L S F + ++ G+ R+YFA +Q LL + + PK + + +WV T Sbjct: 118 RFMYLLSSLESTAGSDFDKVL-NVQGKGRLYFARSKQALLNSSKSSNPKEIASSGFWVTT 176 Query: 150 NTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI 181 N NT +K +++ +++ + +E + + I Sbjct: 177 NNNTAKKQTILTEVLEHLGCDSERAKSIAEHI 208 >UniRef50_Q12MQ7 SeqA protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12MQ7_SHEDO Length = 253 Score = 176 bits (445), Expect = 5e-43, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 103/252 (40%), Gaps = 72/252 (28%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSA----------------------- 37 MK IEVD+ELY +IAS T+ IGESASDILRR+L Sbjct: 1 MKYIEVDEELYRFIASKTERIGESASDILRRLLTLPVDTVTPFEPNAIDEPSLDVAHHQA 60 Query: 38 ----------------ASQPAA---PVTKEVRVASP--------------------AIVE 58 A +P+A P + + A P A + Sbjct: 61 SNFAASNQEQQTGHGHAGEPSAVQTPESNDYAKAQPHSSGYQPGQLEGHKSEPQTLAQLN 120 Query: 59 AKPVKTIKDKVRAMRE-----LLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESL 113 ++P+ + A + L+ ++QK AV RFM LL L +L F + + Sbjct: 121 SQPLAVGQSSQSATSQVDFNALVNEHLLSQQKGAVGRFMWLLEGLAALAPSQFNKVL-LV 179 Query: 114 HGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPA-- 171 G+ R+YFA + LL + PK + T YWV TN NT +K +++ ++ + Sbjct: 180 QGKGRLYFARSKDELLASSASANPKEIGTTGYWVTTNNNTAKKQAILVEVLTKLHCDETL 239 Query: 172 --ELIEKVCGTI 181 + +++C + Sbjct: 240 ASAIADRICDKV 251 >UniRef50_C6RXJ0 SeqA protein n=1 Tax=Vibrio cholera CIRS 101 RepID=C6RXJ0_VIBCH Length = 142 Score = 155 bits (391), Expect = 8e-37, Method: Composition-based stats. Identities = 73/138 (52%), Positives = 93/138 (67%), Gaps = 8/138 (5%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKE--VRVASPAIVE 58 MKTIEVD++LY YIAS T HIGESASDILRR+L AAP + + V+ A + Sbjct: 1 MKTIEVDEDLYRYIASQTLHIGESASDILRRLLNVDGELATAAPAAEPKGIVVSKDAAFD 60 Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 K D V+AMR LL+SDE+A K A++RFML+LSTL+ +D+ +F+EAT GR R Sbjct: 61 TKI-----DGVKAMRSLLISDEFAGLKNAIDRFMLILSTLHRIDSASFSEAT-MFKGRKR 114 Query: 119 VYFAADEQTLLKNGNQTK 136 VYFA +EQTLL +G Q Sbjct: 115 VYFADNEQTLLASGQQPN 132 >UniRef50_B4RST7 SeqA protein n=2 Tax=Alteromonas macleodii RepID=B4RST7_ALTMD Length = 272 Score = 145 bits (367), Expect = 5e-34, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 76/124 (61%), Gaps = 1/124 (0%) Query: 55 AIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLH 114 + A V+T R + + + D A + V++F+ +LS + L+A+ F+ ES+ Sbjct: 142 SSTVASSVETETHNKRDILDAVSKDALATFTKRVDQFLFVLSAAHKLNAENFSSV-ESIK 200 Query: 115 GRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELI 174 G+ R YFA ++ LL+NG+ T PK +P +P+WV+TN NT +K +M+E +++++ + +++ Sbjct: 201 GKNRTYFATSKEALLENGSSTNPKAIPDSPFWVVTNNNTAKKTNMLEQVLRNLGYQPDVV 260 Query: 175 EKVC 178 E V Sbjct: 261 ETVT 264 Score = 59.7 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 25/33 (75%), Positives = 31/33 (93%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRML 33 MK+IE+DD+LY++IAS TKHIGESAS ILRR+L Sbjct: 10 MKSIEIDDDLYAFIASQTKHIGESASQILRRLL 42 >UniRef50_B6XBX2 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XBX2_9ENTR Length = 101 Score = 93.6 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 6/91 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVD+ELY YIASHT+HIGESASDILRRML F +A QP P KEV + +P + Sbjct: 1 MKTIEVDEELYRYIASHTQHIGESASDILRRMLNFKSAQQP-VPAAKEVNL-TPLAPQDA 58 Query: 61 PVKTIK----DKVRAMRELLLSDEYAEQKRA 87 PV K + VR +RELLLSD Y +K++ Sbjct: 59 PVMNTKVVAQNPVRVIRELLLSDAYDGKKQS 89 >UniRef50_B1ZYS0 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZYS0_OPITP Length = 168 Score = 85.9 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 27/181 (14%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+ +++Y + + + ++L +L Sbjct: 1 MKKIEISEQVYDALQNLATGFHRTPDEVLASLLNLP------------------------ 36 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 ++ D + + S E+ + +++ LL L + F E SL G R Y Sbjct: 37 --ESAPDAAEPIAAFITSVEFRSKFTDAEKYLALLGWLATKHPADFGEFIRSLEG-GRKY 93 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 + +L+ + + + GT YW I N +T K + +M+ + + IE C Sbjct: 94 LGLSREEILETCRHNQARQIDGTCYWAIMNIDTATKRRFLARVMEFVGYREAAIEFACAA 153 Query: 181 I 181 I Sbjct: 154 I 154 >UniRef50_C0B295 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B295_9ENTR Length = 72 Score = 77.0 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+DDELY YIAS T+HIGESASDILRR+LK A QP PV V +P + + Sbjct: 1 MKKIEIDDELYRYIASETRHIGESASDILRRLLKLD-AKQPVQPVVVTESVQAPVMKQEA 59 Query: 61 PVKTIKDKVRA 71 K+I ++ Sbjct: 60 EPKSITPAKKS 70 >UniRef50_B5JFJ7 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFJ7_9BACT Length = 151 Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 9/108 (8%) Query: 78 SDEYAEQKRAVNRFMLLLSTLYSLDAQAFAE--ATESLHGRTRVYFAADEQTLLKNGNQT 135 S ++ +R++ LL+ L+ L F E A ++L R YF ++ + + Sbjct: 46 SKDFRTCGNDSDRYLALLAKLHELHGPEFGEFIAAQTLK---RRYFGQSKEEICEASRYN 102 Query: 136 KPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPA----ELIEKVCG 179 + + +P + YW I N +T K ++ ++ + + + E +CG Sbjct: 103 QAREIPNSKYWAIMNIDTPTKRRFLKRLLVYVGYTDVMVKHIQELICG 150 >UniRef50_B5IG47 Type I restriction enzyme R protein N terminal domain protein n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IG47_9EURY Length = 360 Score = 50.1 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 62/174 (35%), Gaps = 14/174 (8%) Query: 5 EVDDELYSYIASHTKHI------GESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVE 58 E D++L +A T+ + E+ L+ LK ++ + P + + + Sbjct: 187 EPDEQLVELLADTTEKLCGYRPDSEAVERFLQNELKIISSRETHTPNIRSL-PSQKKQNH 245 Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 K K +++ L K + + + + ++ F + + GR R Sbjct: 246 QKIYKPTGYVGKSITAFALDGVGYPVKSWKDMLIKVCNLMHLKYPNDFDKVLTLV-GRKR 304 Query: 119 VYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAE 172 YF+ + L P+ + T + TN N + + ++ + + + Sbjct: 305 PYFSKNPNELRS------PERIDDTDIYAETNLNANLIVKLTKLVLTTFGYSED 352 >UniRef50_A5UQD9 Restriction endonuclease n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UQD9_ROSS1 Length = 374 Score = 49.3 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 7/140 (5%) Query: 40 QPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLY 99 Q +AP V + P P + + +L E+ + + L Sbjct: 242 QSSAPSVPTVSLPDPVAPRPAPTVKTRLMPGKPKGFILFGEFYAANTWRGVLLGVCQAL- 300 Query: 100 SLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSM 159 + FA + GR+R + A ++ P +PG W+ TN + + Sbjct: 301 AQRCDNFATVATIIKGRSRQHIADSPTGMIS------PAPIPGAALWIETNQSARSVLWI 354 Query: 160 IEHIMQSMQFPAELIEKVCG 179 I +++++ E V Sbjct: 355 IAQLLEALGRSPNDFEIVVS 374 >UniRef50_A7HKE1 Putative uncharacterized protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKE1_FERNB Length = 349 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 18/169 (10%) Query: 5 EVDDELYSYIASHTKHI-GESASD-ILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPV 62 E D L +A T+ + G D I+ L + + + P T P E + V Sbjct: 187 EPDKRLVEILAETTERLCGHKPDDRIVEEFLG-KISQEKSTPKTM------PTYSETQNV 239 Query: 63 KTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFA 122 + + + L EY N M ++ + + + + F + SL GR R YF+ Sbjct: 240 ED-FTEKSIIGFTLRKKEYQVNSWR-NLLMSIIEIVLTTNRKQFEKVL-SLKGRKRPYFS 296 Query: 123 ADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPA 171 L + P+ + T +V TN + S+ + +++ + Sbjct: 297 KMPSELRE------PEKIKDTDIYVETNLSANSIVSLSKKVIKLFGYDE 339 >UniRef50_B0P191 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P191_9CLOT Length = 412 Score = 42.7 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Query: 96 STLYSLDAQAFAEATES--LHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNT 153 L + + F E E + G+TR YF+ +E++L P+ + G+ +V TN + Sbjct: 172 EILNQKNNKTFEEFLEDKFMQGKTRKYFSRNEESLW------NPEKIKGSNIYVETNLSA 225 Query: 154 GRKCSMIEHIMQSMQFPAE 172 M+ ++ + P Sbjct: 226 NSTRDMVMKMLDKYRIPYA 244 >UniRef50_B4B635 Putative uncharacterized protein n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B635_9CHRO Length = 196 Score = 38.9 bits (89), Expect = 0.083, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 11/107 (10%) Query: 62 VKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYF 121 K + + + +L+ + ++AV+ F+ +++ L +A + R Sbjct: 93 QKVGRQPISNLEVTMLNGRLIKNRKAVDTFLEVITALGIEKVKALG-----IKHRNWDLV 147 Query: 122 AADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQ 168 + + + P YWV+T + T K ++E I + + Sbjct: 148 STQKHP------NDNYQQHPVGRYWVMTTSTTQEKKEILEQIARGLG 188 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFY9 Protein seqA n=150 Tax=Gammaproteobacteria RepID... 241 6e-63 UniRef50_A4W853 Negative regulator of replication initiation Seq... 239 3e-62 UniRef50_Q2NUN5 Negative modulator of replication initiation Seq... 224 1e-57 UniRef50_A0KIH3 SeqA protein n=7 Tax=Gammaproteobacteria RepID=A... 214 8e-55 UniRef50_A4CCC2 SeqA protein n=2 Tax=Alteromonadales RepID=A4CCC... 200 2e-50 UniRef50_A4SPL2 SeqA protein n=1 Tax=Aeromonas salmonicida subsp... 199 4e-50 UniRef50_P44564 Protein seqA homolog n=24 Tax=Pasteurellaceae Re... 193 2e-48 UniRef50_B0TUS0 SeqA family protein n=17 Tax=Shewanella RepID=B0... 191 6e-48 UniRef50_A3N0B4 DNA replication inhibitor protein n=9 Tax=Pasteu... 191 7e-48 UniRef50_A3QE89 SeqA family protein n=1 Tax=Shewanella loihica P... 189 2e-47 UniRef50_Q5QXP4 Negative regulator of replication initiation n=1... 186 4e-46 UniRef50_Q485E3 SeqA protein n=3 Tax=Alteromonadales RepID=Q485E... 182 5e-45 UniRef50_A1STA5 Negative regulator of replication initiation Seq... 179 5e-44 UniRef50_Q15TS1 Negative regulator of replication initiation n=1... 178 1e-43 UniRef50_Q082Q5 SeqA protein n=2 Tax=Shewanella RepID=Q082Q5_SHEFN 177 2e-43 UniRef50_A6FER2 SeqA protein n=1 Tax=Moritella sp. PE36 RepID=A6... 176 4e-43 UniRef50_B1ZYS0 Putative uncharacterized protein n=1 Tax=Opitutu... 167 1e-40 UniRef50_Q12MQ7 SeqA protein n=1 Tax=Shewanella denitrificans OS... 161 8e-39 UniRef50_C6RXJ0 SeqA protein n=1 Tax=Vibrio cholera CIRS 101 Rep... 141 1e-32 UniRef50_B5IG47 Type I restriction enzyme R protein N terminal d... 138 9e-32 UniRef50_B4RST7 SeqA protein n=2 Tax=Alteromonas macleodii RepID... 130 2e-29 UniRef50_A5UQD9 Restriction endonuclease n=1 Tax=Roseiflexus sp.... 123 2e-27 UniRef50_A7HKE1 Putative uncharacterized protein n=1 Tax=Fervido... 114 2e-24 UniRef50_B5JFJ7 Putative uncharacterized protein n=1 Tax=Verruco... 113 4e-24 UniRef50_B6XBX2 Putative uncharacterized protein n=1 Tax=Provide... 85 8e-16 UniRef50_C0B295 Putative uncharacterized protein n=1 Tax=Proteus... 72 1e-11 Sequences not found previously or not previously below threshold: UniRef50_B0P191 Putative uncharacterized protein n=1 Tax=Clostri... 62 1e-08 UniRef50_Q18F88 Putative uncharacterized protein n=1 Tax=Haloqua... 49 8e-05 UniRef50_B1RAL2 HrgA protein n=1 Tax=Clostridium perfringens B s... 48 1e-04 UniRef50_C1A3Q4 Putative uncharacterized protein n=1 Tax=Gemmati... 45 9e-04 UniRef50_C4Z2E4 Putative uncharacterized protein n=3 Tax=Firmicu... 45 0.001 >UniRef50_P0AFY9 Protein seqA n=150 Tax=Gammaproteobacteria RepID=SEQA_ECOL6 Length = 181 Score = 241 bits (616), Expect = 6e-63, Method: Composition-based stats. Identities = 181/181 (100%), Positives = 181/181 (100%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK Sbjct: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY Sbjct: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT Sbjct: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 Query: 181 I 181 I Sbjct: 181 I 181 >UniRef50_A4W853 Negative regulator of replication initiation SeqA n=21 Tax=Gammaproteobacteria RepID=A4W853_ENT38 Length = 228 Score = 239 bits (610), Expect = 3e-62, Method: Composition-based stats. Identities = 156/181 (86%), Positives = 170/181 (93%), Gaps = 1/181 (0%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVDDELY+YIASHT+HIGESASDILRRMLKFSAASQPA PV+KEVR AS + EAK Sbjct: 49 MKTIEVDDELYAYIASHTRHIGESASDILRRMLKFSAASQPATPVSKEVR-ASNVVAEAK 107 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 V +KDKVRA+RELLLSDEYAEQK+AVNRF+L+L+TLYSLD +AFAEATESLHGRTRVY Sbjct: 108 TVAPVKDKVRAVRELLLSDEYAEQKKAVNRFLLVLTTLYSLDNKAFAEATESLHGRTRVY 167 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FAADEQTL++NGNQTKPK VPGTPYWVITNTNTGRK SM+EHIMQSMQFPAELIEKVCGT Sbjct: 168 FAADEQTLIQNGNQTKPKQVPGTPYWVITNTNTGRKRSMVEHIMQSMQFPAELIEKVCGT 227 Query: 181 I 181 I Sbjct: 228 I 228 >UniRef50_Q2NUN5 Negative modulator of replication initiation SeqA n=42 Tax=Gammaproteobacteria RepID=Q2NUN5_SODGM Length = 184 Score = 224 bits (571), Expect = 1e-57, Method: Composition-based stats. Identities = 117/181 (64%), Positives = 147/181 (81%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVD++LY +IA HT HIGESASDILRR+LKF+ A+ V +A+ +++ Sbjct: 1 MKTIEVDEDLYRFIAGHTLHIGESASDILRRLLKFTPGVDNASTPVVAVTMAAKPSEKSE 60 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 V+ + ++VRAMRELLLSD+YA Q++ V+RFML+L+TLY+L QAFA ATE+LHGRTR Y Sbjct: 61 SVRPLPERVRAMRELLLSDDYALQRKVVDRFMLVLTTLYTLSPQAFAGATETLHGRTRTY 120 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FA D +TLL++G+QTKPK VPGTPYWVITNTN+ RK SMIEHIM +MQFP ELIEKVCGT Sbjct: 121 FAGDRETLLQSGHQTKPKQVPGTPYWVITNTNSDRKRSMIEHIMLAMQFPTELIEKVCGT 180 Query: 181 I 181 + Sbjct: 181 L 181 >UniRef50_A0KIH3 SeqA protein n=7 Tax=Gammaproteobacteria RepID=A0KIH3_AERHH Length = 230 Score = 214 bits (546), Expect = 8e-55, Method: Composition-based stats. Identities = 93/181 (51%), Positives = 121/181 (66%), Gaps = 12/181 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIE+DD+LY YIAS T+HIGESASDILRR+L+ A AAPVT+ V A P Sbjct: 62 MKTIELDDDLYFYIASQTRHIGESASDILRRLLEQPANQ--AAPVTEPVTTAQP------ 113 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 T+ D + + LL S E ++++++NRFM +LSTLY D F +ATE + GR RVY Sbjct: 114 --HTVADAM-GLEALLDSGELQKEEKSINRFMQVLSTLYRDDPVGFTQATE-IKGRKRVY 169 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 F+ D L +G+ TKPK VP TP+WVITNTNT RK +M+ +M SM + E+I +VCG Sbjct: 170 FSRDPDALRASGSTTKPKPVPETPFWVITNTNTSRKQNMVAQLMTSMGYGDEVIARVCGA 229 Query: 181 I 181 I Sbjct: 230 I 230 >UniRef50_A4CCC2 SeqA protein n=2 Tax=Alteromonadales RepID=A4CCC2_9GAMM Length = 180 Score = 200 bits (508), Expect = 2e-50, Method: Composition-based stats. Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 5/183 (2%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVR--VASPAIVE 58 MK IE+DDELY YIAS+T+ IGESAS ILRR+L + S+ P+ + V + + E Sbjct: 1 MKKIEIDDELYQYIASNTQSIGESASQILRRLLNL-SQSESLPPIAEPVETIIQDDVLPE 59 Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 +P + K + +L +E A QK AV RF+ +L+ Y + F + + GR R Sbjct: 60 QQPQAVVPYKGN-VFNILNKEELAMQKGAVGRFLFILAAFYRTHKKDFKIVLD-IKGRDR 117 Query: 119 VYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVC 178 VYFA+ ++ LL+ GN PK++P + YWV+TN+NT RK M+ + S+ + E E + Sbjct: 118 VYFASSKEELLEGGNSMNPKNIPDSTYWVMTNSNTTRKKMMLHEVAISLGYTNEQAEIIR 177 Query: 179 GTI 181 + Sbjct: 178 DYL 180 >UniRef50_A4SPL2 SeqA protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SPL2_AERS4 Length = 169 Score = 199 bits (505), Expect = 4e-50, Method: Composition-based stats. Identities = 84/181 (46%), Positives = 113/181 (62%), Gaps = 12/181 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIE+DD+LY YIAS T+HIGESASDILRR+L P V VA P Sbjct: 1 MKTIELDDDLYFYIASQTRHIGESASDILRRLL--------EQPTHITVPVAEPV---DL 49 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 P ++ ++ LL S E ++++++NRFM +LSTLY + F +ATE + GR RVY Sbjct: 50 PQPSVATDAMGLQALLDSGELQKEEKSINRFMQVLSTLYRDNPVGFTQATE-IKGRKRVY 108 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 F+ D + L +G+ TKPK VP TP+WVI+NTNT RK +M+ +M SM + LI +V Sbjct: 109 FSRDPEALRASGSTTKPKPVPETPFWVISNTNTSRKQNMVAQMMASMGYDEALIAQVSSA 168 Query: 181 I 181 I Sbjct: 169 I 169 >UniRef50_P44564 Protein seqA homolog n=24 Tax=Pasteurellaceae RepID=SEQA_HAEIN Length = 197 Score = 193 bits (491), Expect = 2e-48, Method: Composition-based stats. Identities = 91/193 (47%), Positives = 117/193 (60%), Gaps = 13/193 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSA-------------ASQPAAPVTK 47 MK IEVD+ELY YIAS T+ IGESASDILRR+L + Sbjct: 1 MKIIEVDEELYQYIASQTRSIGESASDILRRLLSLPVHTSIVNDLIITSAETDQKPKQAI 60 Query: 48 EVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFA 107 V+ + + + + I V ++ LL S E+ E+ +AV RF+ +L LY + ++FA Sbjct: 61 NVKEVNIKTTKKQSITAINQIVEKVQTLLNSTEFQEESKAVVRFLAILRVLYRTNPESFA 120 Query: 108 EATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSM 167 +ATESL GRTRVYFA DE TLL GN TKPK +P TPYWVITNTN+GRK M+E MQSM Sbjct: 121 QATESLQGRTRVYFARDEATLLMAGNHTKPKQIPDTPYWVITNTNSGRKMLMLEGAMQSM 180 Query: 168 QFPAELIEKVCGT 180 + P LI++V Sbjct: 181 ELPETLIDEVRSY 193 >UniRef50_B0TUS0 SeqA family protein n=17 Tax=Shewanella RepID=B0TUS0_SHEHH Length = 206 Score = 191 bits (486), Expect = 6e-48, Method: Composition-based stats. Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 9/188 (4%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IEVD+ELY +IAS T+HIGESASDILRR+L S +E+ S V K Sbjct: 21 MKYIEVDEELYRHIASKTEHIGESASDILRRILGLQVESV-VQDAPEEISHPSLERVSPK 79 Query: 61 PVKT-------IKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESL 113 PVK V L+ +D A QK AV RF+ +L T++ F + + + Sbjct: 80 PVKVAKVITKMTSTAVSDFTSLIDADVLAAQKGAVGRFLFILDTVHRASPVQFEQVLQ-I 138 Query: 114 HGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAEL 173 GR R+YFA + LLK PK + + +WV TN NT +K +++ ++ Sbjct: 139 QGRDRLYFATSKDALLKASKSANPKEIGQSGFWVTTNNNTAKKRTILSEVLLQFGTDEAQ 198 Query: 174 IEKVCGTI 181 + + I Sbjct: 199 VTDIIEKI 206 >UniRef50_A3N0B4 DNA replication inhibitor protein n=9 Tax=Pasteurellaceae RepID=A3N0B4_ACTP2 Length = 186 Score = 191 bits (486), Expect = 7e-48, Method: Composition-based stats. Identities = 79/181 (43%), Positives = 118/181 (65%), Gaps = 4/181 (2%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTK----EVRVASPAI 56 MKTIEVDDELY YIAS T+ IGESASDILRR+L+ ++ QP V + E++ + Sbjct: 1 MKTIEVDDELYHYIASRTQAIGESASDILRRLLRLPSSPQPFVLVQQNTIDELKELAKPK 60 Query: 57 VEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGR 116 +AK I+ V+ + ++L SD + + + V RF++LLS L+ +AQ F +ATE + G Sbjct: 61 AKAKKEDLIEKAVQKVEKVLKSDVFINESKNVARFLMLLSALHHANAQGFEQATEVVTGT 120 Query: 117 TRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEK 176 R YF+ E+ LL +G+ K K +P +P+WV+TN NT RK ++ +M+SM+ P +IE+ Sbjct: 121 ERTYFSKSEEALLSHGSSVKAKQIPDSPFWVVTNNNTARKGLILTGVMESMELPQHIIER 180 Query: 177 V 177 V Sbjct: 181 V 181 >UniRef50_A3QE89 SeqA family protein n=1 Tax=Shewanella loihica PV-4 RepID=A3QE89_SHELP Length = 176 Score = 189 bits (481), Expect = 2e-47, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 7/182 (3%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+D+ELY +IAS T+ IGESAS+ILRR+L + + + +++ P + K Sbjct: 1 MKYIEIDEELYRHIASKTERIGESASEILRRLLGLDVET---VAMEQPKQISQPGL--DK 55 Query: 61 PVKTIKDKVRAMRE-LLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRV 119 V E L+ A+QK AV RF+ L +Y F + + + GR R+ Sbjct: 56 EVAQTHQAASIDPETLIDKGALAQQKGAVGRFLFTLEAIYKATPNQFDQVLQ-IQGRDRL 114 Query: 120 YFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCG 179 YFA +++LLK PK + + +WV TN NT +K +++ ++ + IE + G Sbjct: 115 YFATSKESLLKASKSANPKEIGNSGFWVTTNNNTAKKRTILSEVLGQFGVQEKQIESIIG 174 Query: 180 TI 181 I Sbjct: 175 HI 176 >UniRef50_Q5QXP4 Negative regulator of replication initiation n=1 Tax=Idiomarina loihiensis RepID=Q5QXP4_IDILO Length = 160 Score = 186 bits (471), Expect = 4e-46, Method: Composition-based stats. Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 21/181 (11%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK I++DD+LY+YIASHT+ IGESASDILRR+L +S+P A +++ Sbjct: 1 MKRIDIDDDLYTYIASHTRQIGESASDILRRLLDV-NSSEPEADS------------KSE 47 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 P +++ ++ L + QK V RF+ +LS LY F++ + + GR R Y Sbjct: 48 PTESVFNR-------LNEQDVRIQKSVVARFLYILSMLYRCHPSEFSQVLD-IRGRDRQY 99 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 FA E+ LL +GN T PK +P +P+WVITNTNT +K +M+ + + + + + EK+ Sbjct: 100 FARSEEALLTSGNSTNPKQIPDSPFWVITNTNTTKKKAMLTQVAEKLGYQSADAEKIRDF 159 Query: 181 I 181 + Sbjct: 160 L 160 >UniRef50_Q485E3 SeqA protein n=3 Tax=Alteromonadales RepID=Q485E3_COLP3 Length = 200 Score = 182 bits (462), Expect = 5e-45, Method: Composition-based stats. Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 21/199 (10%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAA--------SQPAAPVT------ 46 MK IE+D+ELY YIA++T+ IGESAS ILRR+L ++P+ V Sbjct: 1 MKNIEIDEELYQYIATNTQFIGESASAILRRLLNLGVEAKLETVTVNEPSDVVEVNILPE 60 Query: 47 ---KEVRVASPAIVEAKP---VKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYS 100 K V++ + + E K VK + + + +E A Q+ AV RF+L+L+ LY Sbjct: 61 SEEKAVKIETAEVKEPKSKAVVKVTAESHETVFNFINKEELAMQRGAVGRFLLILAALYR 120 Query: 101 LDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI 160 F T+ + GR R+YFA E L ++G+ TKP+ +P +P+WVITN+NT RK M+ Sbjct: 121 AHPDQFGVVTD-ISGRDRLYFANSENKLAESGSSTKPRQIPESPFWVITNSNTTRKKMML 179 Query: 161 EHIMQSMQFPAELIEKVCG 179 S+ + +EK+ Sbjct: 180 TKASISLGYSDSDVEKIRE 198 >UniRef50_A1STA5 Negative regulator of replication initiation SeqA n=2 Tax=Psychromonas RepID=A1STA5_PSYIN Length = 207 Score = 179 bits (453), Expect = 5e-44, Method: Composition-based stats. Identities = 70/207 (33%), Positives = 110/207 (53%), Gaps = 26/207 (12%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFS-AASQPAAPVTKEVRVASP----- 54 MK IE++D+LY YI ++ + GE+ S ILRR+L A+ A P+T V ++P Sbjct: 1 MKNIEIEDDLYKYILANIEAFGETPSQILRRLLSLPNASPDNATPITSSVTPSAPRQEAV 60 Query: 55 ----AIVEAKPVKTIKDKVRAMRE--------LLLSDEYAEQKRAVNRFMLLLSTLYSLD 102 ++ EA K + ++ E L S+ + + N+FM+LL+T+Y + Sbjct: 61 NDESSVFEAVTPKVLDRANISLPEPLAHGVNALFDSEVFKTEAVVTNKFMMLLATMYYEN 120 Query: 103 AQAFAEATESLHGRTRVYFAADEQTLLKNGNQ--------TKPKHVPGTPYWVITNTNTG 154 AF +A + GRTR Y + LL ++ +KP+++P TP+WVITN NTG Sbjct: 121 KNAFEDAADKTKGRTRDYLGQNLNALLAADSEEEQNFFKASKPRNIPHTPFWVITNANTG 180 Query: 155 RKCSMIEHIMQSMQFPAELIEKVCGTI 181 RK +I +M SM +P LIE++ I Sbjct: 181 RKRIIITQMMASMGYPHYLIERIKEEI 207 >UniRef50_Q15TS1 Negative regulator of replication initiation n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15TS1_PSEA6 Length = 174 Score = 178 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 106/179 (59%), Gaps = 14/179 (7%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE++D+LY+YIAS T+HIGE+ASDILRR++ P V K V A P+ K Sbjct: 1 MKNIEIEDDLYAYIASQTQHIGETASDILRRLV------MPENTVVKTVVAAKPSATTKK 54 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 PV + + + +DE +E + V RF+ +LS L S+ F E +L GR RVY Sbjct: 55 PVGDVFSQ-------ITTDELSEYPKMVERFLKILSVLESMHGAQFDEVL-TLSGRNRVY 106 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCG 179 FA D++TLL+ + T PK + + +WV+TN NT +K S+I+ + + + + A +++ Sbjct: 107 FAKDKETLLQASSVTNPKQIGESTFWVMTNNNTAKKASLIKEVAEVLGYNANDGQRLAA 165 >UniRef50_Q082Q5 SeqA protein n=2 Tax=Shewanella RepID=Q082Q5_SHEFN Length = 208 Score = 177 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 35/212 (16%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+D+ELY +IAS T+ IGESASDILRR+L S + V+ ++ P++ Sbjct: 1 MKYIEIDEELYRFIASKTERIGESASDILRRLLNLSVEN---VDVSLPTDISHPSLESQS 57 Query: 61 PV--KTIKDKVRAMRELLLSDE-----------------------------YAEQKRAVN 89 PV + D+ +A E +++D+ ++QK AV Sbjct: 58 PVNRHPVFDQAKAAVEKVIADQNSANEHYPVDEDIASSTSIDFDAMVSQHLLSQQKGAVG 117 Query: 90 RFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVIT 149 RFM LLS+L S F + ++ G+ R+YFA +Q LL + + PK + + +WV T Sbjct: 118 RFMYLLSSLESTAGSDFDKVL-NVQGKGRLYFARSKQALLNSSKSSNPKEIASSGFWVTT 176 Query: 150 NTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI 181 N NT +K +++ +++ + +E + + I Sbjct: 177 NNNTAKKQTILTEVLEHLGCDSERAKSIAEHI 208 >UniRef50_A6FER2 SeqA protein n=1 Tax=Moritella sp. PE36 RepID=A6FER2_9GAMM Length = 206 Score = 176 bits (445), Expect = 4e-43, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 117/207 (56%), Gaps = 27/207 (13%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRML-----------KFSAASQPAAPV---T 46 MKTIE++D+LY YIAS TK IGESASDILRR+L A Q T Sbjct: 1 MKTIELEDDLYRYIASQTKDIGESASDILRRLLDVSTDVSADLTNVEALQQHVVDTNSET 60 Query: 47 KEVRVASPAIVEAKPVK---TIKDKVR---------AMRELLLSDEYAEQKRAVNRFMLL 94 K+ SP IVE PV + +V ++ +L+ + ++ E +V +F+ + Sbjct: 61 KQTVTKSPVIVEPTPVSAPIVVDTEVEVVSHSTLPTSIAKLIKNKKFKETTVSVTKFIQI 120 Query: 95 LSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTG 154 LS LY+ + + F AT+ + GR R+YFA E LL GN TKP+H+ TPYWVITNTNTG Sbjct: 121 LSVLYAENPKEFDSATD-IKGRKRIYFAKSESELLSAGNTTKPRHIEHTPYWVITNTNTG 179 Query: 155 RKCSMIEHIMQSMQFPAELIEKVCGTI 181 RK ++I +M M + LI+ V +I Sbjct: 180 RKRNIITQLMAEMGYTHALIDAVSQSI 206 >UniRef50_B1ZYS0 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZYS0_OPITP Length = 168 Score = 167 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 27/181 (14%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+ +++Y + + + ++L +L Sbjct: 1 MKKIEISEQVYDALQNLATGFHRTPDEVLASLLNLP------------------------ 36 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVY 120 ++ D + + S E+ + +++ LL L + F E SL G R Y Sbjct: 37 --ESAPDAAEPIAAFITSVEFRSKFTDAEKYLALLGWLATKHPADFGEFIRSLEG-GRKY 93 Query: 121 FAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGT 180 + +L+ + + + GT YW I N +T K + +M+ + + IE C Sbjct: 94 LGLSREEILETCRHNQARQIDGTCYWAIMNIDTATKRRFLARVMEFVGYREAAIEFACAA 153 Query: 181 I 181 I Sbjct: 154 I 154 >UniRef50_Q12MQ7 SeqA protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12MQ7_SHEDO Length = 253 Score = 161 bits (408), Expect = 8e-39, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 99/248 (39%), Gaps = 68/248 (27%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSA----------------------- 37 MK IEVD+ELY +IAS T+ IGESASDILRR+L Sbjct: 1 MKYIEVDEELYRFIASKTERIGESASDILRRLLTLPVDTVTPFEPNAIDEPSLDVAHHQA 60 Query: 38 ----------------ASQPAA---PVTKEVRVASP--------------------AIVE 58 A +P+A P + + A P A + Sbjct: 61 SNFAASNQEQQTGHGHAGEPSAVQTPESNDYAKAQPHSSGYQPGQLEGHKSEPQTLAQLN 120 Query: 59 AKPVKTIKDKVRAMR-----ELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESL 113 ++P+ + A L+ ++QK AV RFM LL L +L F + + Sbjct: 121 SQPLAVGQSSQSATSQVDFNALVNEHLLSQQKGAVGRFMWLLEGLAALAPSQFNKVL-LV 179 Query: 114 HGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAEL 173 G+ R+YFA + LL + PK + T YWV TN NT +K +++ ++ + L Sbjct: 180 QGKGRLYFARSKDELLASSASANPKEIGTTGYWVTTNNNTAKKQAILVEVLTKLHCDETL 239 Query: 174 IEKVCGTI 181 + I Sbjct: 240 ASAIADRI 247 >UniRef50_C6RXJ0 SeqA protein n=1 Tax=Vibrio cholera CIRS 101 RepID=C6RXJ0_VIBCH Length = 142 Score = 141 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 73/141 (51%), Positives = 94/141 (66%), Gaps = 8/141 (5%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKE--VRVASPAIVE 58 MKTIEVD++LY YIAS T HIGESASDILRR+L AAP + + V+ A + Sbjct: 1 MKTIEVDEDLYRYIASQTLHIGESASDILRRLLNVDGELATAAPAAEPKGIVVSKDAAFD 60 Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 K D V+AMR LL+SDE+A K A++RFML+LSTL+ +D+ +F+EAT GR R Sbjct: 61 TKI-----DGVKAMRSLLISDEFAGLKNAIDRFMLILSTLHRIDSASFSEAT-MFKGRKR 114 Query: 119 VYFAADEQTLLKNGNQTKPKH 139 VYFA +EQTLL +G Q + Sbjct: 115 VYFADNEQTLLASGQQPNLRR 135 >UniRef50_B5IG47 Type I restriction enzyme R protein N terminal domain protein n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IG47_9EURY Length = 360 Score = 138 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 64/178 (35%), Gaps = 14/178 (7%) Query: 5 EVDDELYSYIASHTKHI------GESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVE 58 E D++L +A T+ + E+ L+ LK ++ + P + + + Sbjct: 187 EPDEQLVELLADTTEKLCGYRPDSEAVERFLQNELKIISSRETHTPNIRSL-PSQKKQNH 245 Query: 59 AKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTR 118 K K +++ L K + + + + ++ F + + GR R Sbjct: 246 QKIYKPTGYVGKSITAFALDGVGYPVKSWKDMLIKVCNLMHLKYPNDFDKVLTLV-GRKR 304 Query: 119 VYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEK 176 YF+ + L P+ + T + TN N + + ++ + + + ++ Sbjct: 305 PYFSKNPNELRS------PERIDDTDIYAETNLNANLIVKLTKLVLTTFGYSEDALKI 356 >UniRef50_B4RST7 SeqA protein n=2 Tax=Alteromonas macleodii RepID=B4RST7_ALTMD Length = 272 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 76/125 (60%), Gaps = 1/125 (0%) Query: 55 AIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLH 114 + A V+T R + + + D A + V++F+ +LS + L+A+ F+ ES+ Sbjct: 142 SSTVASSVETETHNKRDILDAVSKDALATFTKRVDQFLFVLSAAHKLNAENFSSV-ESIK 200 Query: 115 GRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELI 174 G+ R YFA ++ LL+NG+ T PK +P +P+WV+TN NT +K +M+E +++++ + +++ Sbjct: 201 GKNRTYFATSKEALLENGSSTNPKAIPDSPFWVVTNNNTAKKTNMLEQVLRNLGYQPDVV 260 Query: 175 EKVCG 179 E V Sbjct: 261 ETVTA 265 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK+IE+DD+LY++IAS TKHIGESAS ILRR+L + + + Sbjct: 10 MKSIEIDDDLYAFIASQTKHIGESASQILRRLL-LPEDGAISGSAEASGNESKGDASDQA 68 Query: 61 PVKTIKDKVRAMRELLLSDEYAEQKRA 87 IK + S E +A Sbjct: 69 KTSEIKSAGGEEKTNEPSVEVKAAPKA 95 >UniRef50_A5UQD9 Restriction endonuclease n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UQD9_ROSS1 Length = 374 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 7/140 (5%) Query: 40 QPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLY 99 Q +AP V + P P + + +L E+ + + L Sbjct: 242 QSSAPSVPTVSLPDPVAPRPAPTVKTRLMPGKPKGFILFGEFYAANTWRGVLLGVCQAL- 300 Query: 100 SLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSM 159 + FA + GR+R + A ++ P +PG W+ TN + + Sbjct: 301 AQRCDNFATVATIIKGRSRQHIADSPTGMIS------PAPIPGAALWIETNQSARSVLWI 354 Query: 160 IEHIMQSMQFPAELIEKVCG 179 I +++++ E V Sbjct: 355 IAQLLEALGRSPNDFEIVVS 374 >UniRef50_A7HKE1 Putative uncharacterized protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKE1_FERNB Length = 349 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 18/170 (10%) Query: 5 EVDDELYSYIASHTKHI-GESASD-ILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPV 62 E D L +A T+ + G D I+ L + + + P T P E + V Sbjct: 187 EPDKRLVEILAETTERLCGHKPDDRIVEEFLG-KISQEKSTPKTM------PTYSETQNV 239 Query: 63 KTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFA 122 + + + L EY N M ++ + + + + F + SL GR R YF+ Sbjct: 240 ED-FTEKSIIGFTLRKKEYQV-NSWRNLLMSIIEIVLTTNRKQFEKVL-SLKGRKRPYFS 296 Query: 123 ADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAE 172 L + P+ + T +V TN + S+ + +++ + Sbjct: 297 KMPSELRE------PEKIKDTDIYVETNLSANSIVSLSKKVIKLFGYDEN 340 >UniRef50_B5JFJ7 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFJ7_9BACT Length = 151 Score = 113 bits (282), Expect = 4e-24, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 9/117 (7%) Query: 69 VRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAE--ATESLHGRTRVYFAADEQ 126 + S ++ +R++ LL+ L+ L F E A ++L R YF ++ Sbjct: 37 GNPLYAFSHSKDFRTCGNDSDRYLALLAKLHELHGPEFGEFIAAQTLK---RRYFGQSKE 93 Query: 127 TLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPA----ELIEKVCG 179 + + + + +P + YW I N +T K ++ ++ + + + E +CG Sbjct: 94 EICEASRYNQAREIPNSKYWAIMNIDTPTKRRFLKRLLVYVGYTDVMVKHIQELICG 150 >UniRef50_B6XBX2 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XBX2_9ENTR Length = 101 Score = 85.2 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 53/91 (58%), Positives = 64/91 (70%), Gaps = 6/91 (6%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MKTIEVD+ELY YIASHT+HIGESASDILRRML F +A QP P KEV + +P + Sbjct: 1 MKTIEVDEELYRYIASHTQHIGESASDILRRMLNFKSAQQP-VPAAKEVNL-TPLAPQDA 58 Query: 61 PVKTIK----DKVRAMRELLLSDEYAEQKRA 87 PV K + VR +RELLLSD Y +K++ Sbjct: 59 PVMNTKVVAQNPVRVIRELLLSDAYDGKKQS 89 >UniRef50_C0B295 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B295_9ENTR Length = 72 Score = 71.7 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 37/71 (52%), Positives = 46/71 (64%), Gaps = 1/71 (1%) Query: 1 MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAK 60 MK IE+DDELY YIAS T+HIGESASDILRR+LK A QP PV V +P + + Sbjct: 1 MKKIEIDDELYRYIASETRHIGESASDILRRLLKLD-AKQPVQPVVVTESVQAPVMKQEA 59 Query: 61 PVKTIKDKVRA 71 K+I ++ Sbjct: 60 EPKSITPAKKS 70 >UniRef50_B0P191 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P191_9CLOT Length = 412 Score = 61.7 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 8/108 (7%) Query: 70 RAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATES--LHGRTRVYFAADEQT 127 L + + + L + + F E E + G+TR YF+ +E++ Sbjct: 146 TKPAAFSLDEIRYPARMWKQMLVKTCEILNQKNNKTFEEFLEDKFMQGKTRKYFSRNEES 205 Query: 128 LLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIE 175 L P+ + G+ +V TN + M+ ++ + P + Sbjct: 206 L------WNPEKIKGSNIYVETNLSANSTRDMVMKMLDKYRIPYAAFK 247 >UniRef50_Q18F88 Putative uncharacterized protein n=1 Tax=Haloquadratum walsbyi DSM 16790 RepID=Q18F88_HALWD Length = 237 Score = 49.0 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 22/169 (13%) Query: 5 EVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPVKT 64 E + E + ++ + E+ +L + A A +P Sbjct: 76 ERESEKFVFLQGKYQQFSETVDKLL---------------LKTTEGEAEDAEPTDEPTGD 120 Query: 65 IKDKVRAMRELLLSD-EYAEQKRAVNRFMLLLSTLYS--LDAQAFAEATESLHGRTRVYF 121 + + + E + + V+ + L T + LD + + GR R YF Sbjct: 121 VGHTGDDLAGTTPAAIEILDSTKDVDNWTDTLQTAAAQVLDRVENQDKITEIDGRERSYF 180 Query: 122 AADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFP 170 N P+ +PGT +V TN + +I I+ + Sbjct: 181 VEKGAE----SNLISPREIPGTNMFVETNFSANDVDRLIAKILNKYGYD 225 >UniRef50_B1RAL2 HrgA protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RAL2_CLOPE Length = 355 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 7/110 (6%) Query: 65 IKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAAD 124 I + + + ++ + ++ + L LD+ F AT+ + G+ R+YF+ + Sbjct: 247 IFTGQSPIELCIGNSKFQV-NNWKDLYIQACNYLIDLDSNLFISATKKVKGKKRIYFSKN 305 Query: 125 EQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELI 174 + K + + + N + I H+++ Q I Sbjct: 306 RSDVF------KAQLLEKVNLYAEVNFSANAIIRTIRHLLKEYQIDESNI 349 >UniRef50_C1A3Q4 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3Q4_GEMAT Length = 371 Score = 45.5 bits (106), Expect = 9e-04, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 3/156 (1%) Query: 23 ESASDILRRMLKFSAASQPAAPVTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYA 82 E+ S + + + + + V A +E +K ++ + +A Sbjct: 214 EACSRFVASISSATLPQKVPLSTGRSVEPAPVLRIEPATQAVVKPGNGSVGFSMDGRRFA 273 Query: 83 EQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKH-VP 141 A +L D HGR R Y A + L +H + Sbjct: 274 A-GSAREVLQGILGAFAKKDPTFLDRFASRKHGRKRRYIAINRADLYPGRPDLAAEHAIE 332 Query: 142 -GTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEK 176 G +W+ TN + +I+ + + + ++ Sbjct: 333 LGAGWWMGTNYSKRSIAEIIDLACEVAEVHSADLQI 368 >UniRef50_C4Z2E4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=C4Z2E4_EUBE2 Length = 844 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 10/132 (7%) Query: 46 TKEVRVASPAIVEAKPVKTIKDK---VRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD 102 V P + + R + + + V F ++ LY+ D Sbjct: 556 AAPVTEYKPEEKQLDTYTLEDEDELTGRLIAKFAFKNTEQPVTSWVEMFQKVIQILYAED 615 Query: 103 AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEH 162 + S ++F + TK + +V TNT+T K S++ Sbjct: 616 KANITKLAMSEEENIALHFNTNPDAF------TKSVEIGD-GIYVWTNTSTQSKLSVLSR 668 Query: 163 IMQSMQFPAELI 174 + + + Sbjct: 669 LFKLYNEDPSDL 680 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.128 0.312 Lambda K H 0.267 0.0394 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 834,996,307 Number of Sequences: 3077464 Number of extensions: 28226023 Number of successful extensions: 92471 Number of sequences better than 1.0e-01: 31 Number of HSP's better than 0.1 without gapping: 71 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 92295 Number of HSP's gapped (non-prelim): 89 length of query: 181 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 60 effective length of database: 668,023,212 effective search space: 40081392720 effective search space used: 40081392720 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 88 (38.6 bits)