41 c3civA_ Probab=99.86   E-value=1.8e-22  Score=180.08  Aligned_columns=242  Identities=19%

Q ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC---------------------HHHHHHHHHCCCE
Q ss_conf             9974301576775453479999999999999819859994488886---------------------8998889773829
Q batch____       335 MLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPND---------------------PRFYELCDIYGLF  393 (1030)
Q Consensus       335 ~lrGvn~h~~~p~~G~~~~~e~~~~di~lmK~~g~N~iR~sHyp~~---------------------~~fydlcDe~Gl~  393 (1030)
                      ||||+|.+.+.+....  +....+++|++||++|+|+||+.|++..                     ..+.++|++.||+
T Consensus         8 ~i~G~~~~~~~~~~~~--~~~~~~~~l~~l~~~G~N~vRi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~~Gl~   85 (316)
T c3civA_           8 FIRGMTFGFVGQHGTW--GTDEARASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLK   85 (316)
T ss_dssp             CEEEEEESTTCBTTGG--GSHHHHHHHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEECCCCCCCCC--CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             2156341441477888--83689999999998399899982324777767765444767767978999999999868987


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-----------CCCHHHHHHHHH
Q ss_conf             997355543445445655665689999999999999999985799569999468788-----------763789999999
Q batch____       394 VMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNES-----------GYGCNIRAMYHA  462 (1030)
Q Consensus       394 V~dEa~~e~hg~~~~~~~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNEs-----------g~g~~~~~~~~~  462 (1030)
                      ||-+..+..+.-.+..... +...+.+.....+++.++++|.+|||++++|.+|||.           .....+.++++.
T Consensus        86 Vil~~h~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~nE~~~~gne~~~~~~~~~~~~~~~~~  164 (316)
T c3civA_          86 VCLKPTVNCRDGTWRGEIR-FEKEHGPDLESWEAWFGSYSDMMAHYAHVAKRTGCEMFCVGCEMTTAEPHEAMWRETIAR  164 (316)
T ss_dssp             EEEEEEEEETTCCCGGGCC-CSBSCCTTSSBHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTTTCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             9997235888876555667-678601255769999999999998799998741998585067777600146789999999


Q ss_pred             HHHHCCCCEEE------CCCCCCCCCCCEEECC-CCCHHHHHHHHH------CCCCCEEEEEEECCCCCCCCCC------
Q ss_conf             99858997397------1787776403366188-889989989851------2899618997411268887566------
Q batch____       463 AKALDDTRLVH------YEEDRDAEVVDIISTM-YTRVPLMNEFGE------YPHPKPRIICEYAHAMGNGPGG------  523 (1030)
Q Consensus       463 ~k~lDptRpv~------ye~~~~~~~~Di~s~~-Y~~~~~~~~~~~------~~~~kP~i~~Ey~hamgns~g~------  523 (1030)
                      +|+.||+++++      ++........|+++.| |+..........      ....||++.|||++.+.++.+.      
T Consensus       165 ir~~dp~~~~~~~~~~~~~~~~~~~~~D~ig~~~Y~~~~~~~~~~~~~~~~~~~~~kPi~i~E~G~~~~~g~~~~~~~~~  244 (316)
T c3civA_         165 VRTEYDGLVTYNCNHGREEHVRFWDAVDLISSSAYYPIDRWRDRVPVLREVAEAHEKPLFFMEVGCPSRSGSGACPWDYR  244 (316)
T ss_dssp             HHHHCCSEEEEEEETTCTTTCSCGGGSSEEEEECCCCGGGHHHHHHHHHHHHHHHTCCEEEEEECCCSBTTGGGSTTCTT
T ss_pred             HHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             99746997799446886333453334576763147774306889998654653058857997014522357766765766


Q ss_pred             -------------HHHHHHHHHHCCCEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCH
Q ss_conf             -------------8999999876702003336777764752327997479974166567766776221304778978388
Q batch____       524 -------------LTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGP  590 (1030)
Q Consensus       524 -------------l~~yw~~~~~~p~~~GgfiW~~~D~~~~~~~~~G~~~~~yGgdf~d~~~d~~f~~~Giv~~dr~pkp  590 (1030)
                                   ++.++..+.+.|.+.|.|+|+|.++.-.....               +.|+.|+..|        ||
T Consensus       245 ~~~~~~~~~Qa~~~~~~~~~~~~~~~~~G~~~W~w~~~~~~~~~~---------------~~d~~f~~~~--------Kp  301 (316)
T c3civA_         245 HPGAVCLDEQARFYEAMFAAMPDEPWFKGYMLWEWPWKLYPREAA---------------SEDGSYCIYG--------KP  301 (316)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHSCCCTTEEEEEEEEECSSCCCGGGG---------------GGCCSSCCTT--------SH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC---------------CCCCCCEECC--------CC
T ss_conf             644569899999999999998537780259998616878873325---------------6488520776--------21


Q ss_pred             HHHHHHHHHCCE
Q ss_conf             899989861573
Q batch____       591 GLKEYKQVIAPV  602 (1030)
Q Consensus       591 ~~~e~k~~~qPv  602 (1030)
                      +...+|+.|+++
T Consensus       302 a~~v~~~~~~~~  313 (316)
T c3civA_         302 AEDVVARAFSAI  313 (316)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             899999999887