Phyre 2 alignment of Q9XB42 with c1kxfA_

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Job Description | Q9XB42
Confidence | 2.37% | Date | Thu Jan 5 12:38:30 GMT 2012
Rank | 81 | Aligned Residues | 28
% Identity | 32% | Template | c1kxfA_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:sindbis virus capsid protein; | PDBTitle: sindbis virus capsid, (wild-type) residues 1-264,2 tetragonal crystal form (form ii)
Resolution | 2.38 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | R | Q | H | P | E | S | R | I | F | R | Y | C | T | . | . | . | . | G | K | Y | Q | W | H | G | S | V | C | H | Y | T | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | P | V | N | M | R | S | E | A | F | T | Y | T | S | E | H | P | E | G | F | Y | N | W | H | H | G | A | V | Q | Y | S | G
Template Known Secondary structure |  |  |  | T | T | G | G | G | S |  | B |  | B |  |  |  |  |  | S |  |  |  |  |  | T | T |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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