BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (233 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P52133 Uncharacterized HTH-type transcriptional regulat... 472 e-132 UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteria... 218 9e-56 UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherich... 167 2e-40 UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Provide... 167 3e-40 UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providenc... 160 3e-38 UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia c... 159 5e-38 UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yers... 155 1e-36 UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providenc... 155 1e-36 UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enter... 152 7e-36 UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Provide... 129 1e-28 UniRef50_C9QRE5 Transcriptional regulator protein-like protein n... 120 3e-26 UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 T... 97 4e-19 UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Cam... 91 4e-17 UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Provide... 90 6e-17 UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax... 89 1e-16 UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax... 88 3e-16 UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp.... 81 3e-14 UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibri... 81 3e-14 UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobac... 80 6e-14 UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Ta... 79 2e-13 UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibr... 77 4e-13 UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-tu... 76 8e-13 UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter ... 75 2e-12 UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax... 70 4e-11 UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 T... 67 4e-10 UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibr... 52 2e-05 UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Provide... 49 2e-04 UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 ... 47 6e-04 UniRef50_B2PXP4 Putative uncharacterized protein n=1 Tax=Provide... 45 0.002 UniRef50_A5Z6R5 Putative uncharacterized protein n=1 Tax=Eubacte... 39 0.095 >UniRef50_P52133 Uncharacterized HTH-type transcriptional regulator yfjR n=15 Tax=Enterobacteriaceae RepID=YFJR_ECOLI Length = 233 Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/233 (100%), Positives = 233/233 (100%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ Sbjct: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP Sbjct: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL Sbjct: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180 Query: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE Sbjct: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233 >UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteriaceae RepID=B1IPS8_ECOLC Length = 237 Score = 218 bits (556), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 121/225 (53%), Positives = 152/225 (67%), Gaps = 4/225 (1%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+QAERR+DRL+VRLSLIISRL+AGETL++RKLAAEFGVS RTL RDFRERL+YLDLEYQ Sbjct: 1 MSQAERRYDRLSVRLSLIISRLLAGETLNMRKLAAEFGVSERTLHRDFRERLIYLDLEYQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVI-APANP 118 G CRL T G + + FA +SG LFP +D LVN+LL D SPC+I P Sbjct: 61 DGCCRLLTGGRQEIREEAAMQFARQSGTGALFPDMDHHLVNSLLSSKDSSPCLIWHPGAS 120 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 V S + F RL++A++ R+VTL+A+G RC+ LAP RL+ W+LV EH I VF Sbjct: 121 VTSSRPGI-FTRLVRAVSENRKVTLLADGCRCDNLAPYRLIFSTGGWFLVGEHLARITVF 179 Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 L +H + ETF + R++ P F+QALPHF + HSLL Sbjct: 180 ALHTVHSVTFHAETFTPDGHFTRILSHPDFLQALPHFH-VFHSLL 223 >UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherichia coli 83972 RepID=C2DJQ1_ECOLX Length = 238 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 138/228 (60%), Gaps = 6/228 (2%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M HDRL+VRLS+IISRL+AGE+L ++ LA EFGVS RTL+RDF++RL++LDLE++ Sbjct: 12 MKTQHDHHDRLSVRLSVIISRLLAGESLELKVLADEFGVSERTLQRDFQQRLIHLDLEHR 71 Query: 61 SGYCRL-RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE--SPCVIAPAN 117 SG RL R G E +P+ F SG++G+ P +R+L+ L+ + SPC+I Sbjct: 72 SGSYRLIRQTGRE--HLPNTFAFIRNSGISGIIPAQNRKLIR-LIASNSGVSPCLIGHGA 128 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 + F +L +AI R VTL+ G+ E +AP RL+ + W+LVA ++ V Sbjct: 129 LSSPVTQTACFLKLAEAIRDYRAVTLLVNGKSYEAVAPRRLIFQSKNWFLVATRTRNLQV 188 Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 F +++++ + L +FRR L L FI ALPHFRFI + TF Sbjct: 189 FRMEDVNAVTVLDTSFRRKPELDALTASEEFISALPHFRFISDVIQTF 236 >UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PWJ3_PROST Length = 231 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 99/223 (44%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-EY 59 M + + RHDRLA+RLSLIISRL+AGETLS+R LA EFGVS RT++RD ERL +LDL Sbjct: 1 MKKQDTRHDRLAMRLSLIISRLLAGETLSLRALANEFGVSERTIQRDLHERLSHLDLVSN 60 Query: 60 QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPC-VIAPAN 117 ++GYC T + PD+ F + GLA FPGL R+ VN L+ D PC +++P Sbjct: 61 EAGYCLSSTLT--VWRTPDLFSFLQKVGLASYFPGLTRKTVNHLVQSDLHFPCFMLSPFE 118 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 S F++LIQAIT V + + L P RL ++++ WYL+ ++ V Sbjct: 119 TEFSSCDGECFYQLIQAITQHFIVQVKQKEGIYLHLEPYRLALYERAWYLIGYASPYVRV 178 Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220 L I + + FRR +CRL P FI ALPHF FIQH Sbjct: 179 IPLHHIQSVHITEIPFRRRKEICRLSSTPEFISALPHFEFIQH 221 >UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BF5E Length = 441 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 130/219 (59%), Gaps = 1/219 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M + E R+DRLA+RL++++SRL GE+L++ +LA EFGVS RT++RD RERL YLD EY Sbjct: 217 MPKQEHRYDRLAIRLAILVSRLFMGESLNISQLAQEFGVSGRTVQRDLRERLRYLDTEYI 276 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVIAPANPV 119 G+ LR A + D+L FA + +A FP LD +L++ LL +SPC+I P Sbjct: 277 DGHVSLRDARGPFRTNSDILRFAQITSVAHYFPVLDPKLLSVLLDNRQDSPCIIWNDPPR 336 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 +P F ++Q+I R + + +AP RL+ H WYL A + I VFT Sbjct: 337 QAPELFGGFQVIVQSIIRNRLIRFLHRKHLQSSIAPYRLICHDGEWYLAAVSKDRIQVFT 396 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218 L I + +F RN + R+++DP F++ALPHF +I Sbjct: 397 LSAITDVVMTASSFARNRHIDRILQDPRFMRALPHFDYI 435 >UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia coli RepID=Q4FBD3_ECOLX Length = 226 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 136/226 (60%), Gaps = 3/226 (1%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+ RHDRLAVRLSLIISRL+ GE+LS++ L+ EFGV+ RTL+RDF +RL++LDLEY+ Sbjct: 1 MSDNRSRHDRLAVRLSLIISRLMTGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119 +G LR S +P++L F +G+A + P + RL+ L E SPC+I P Sbjct: 61 NGRYSLRRQSSP-GAIPEMLSFIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPD 119 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 + + F +LI AI ++L+AE R L PCRL+ + +WYL+A +G + VF Sbjct: 120 ITATFPECFSQLILAIRQCIHISLMAE-RWYPSLEPCRLIYYSGSWYLIALQKGKLQVFP 178 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 L +I + E F R + LV + FI ALPHF FI + TF Sbjct: 179 LADIKSVSLTSERFERRGHIHNLVAEERFISALPHFSFIHKLINTF 224 >UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SV45_YERFR Length = 229 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M++ +DRLAVRL+LII RL GE LS+ LA+EF VS RTLRRDF +RL+YLDLE Sbjct: 1 MSEVSMHYDRLAVRLALIIGRLFMGEGLSINALASEFNVSPRTLRRDFNQRLIYLDLEQV 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPV 119 G RL + + D++ FA + +A FP LD +L++ LL + SP V+ A P Sbjct: 61 DGIYRLAKSHIGSRTDGDIIHFARVTHMAQFFPALDSKLLSVLLNKNVGSPYVVYHAPPK 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 P+ F+R+ QAI V L +G LAP RL+ WYLV EH + VF Sbjct: 121 NPPALFGGFYRITQAIIDNVFVELSVQGNEYFNLAPYRLVYFDGYWYLVGEHNLTLQVFL 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220 L I + F + + + L + FI+ALPHF+F+++ Sbjct: 181 LIHITDVTLTPRRFTKKEYITALTAEADFIKALPHFQFVRN 221 >UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C349A5 Length = 225 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 124/220 (56%), Gaps = 1/220 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+ + RHDRLA RL+ IIS+L GET+ + L+ E VS RTLRRDF ERL YLDLEY Sbjct: 1 MSTSVSRHDRLASRLAFIISQLFRGETVYLSALSEELNVSTRTLRRDFNERLQYLDLEYH 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM-CDESPCVIAPANPV 119 G RL + + D+L FA + + LFP LDR+L+ LL +SP ++ P Sbjct: 61 QGGYRLAASQRPFRTDKDILRFAAITHITSLFPALDRKLLTVLLDPTIDSPFIVYHTPPE 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 PS F+ L QAI RR + +G+ +AP +L+ + WYL A+ HI VF Sbjct: 121 QRPSLFGGFYILTQAIVKRRLLQFAHQGKNITNVAPYKLIYYHGHWYLAADIAQHIHVFD 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQ 219 + + + FR + L + + + FIQALPH+++IQ Sbjct: 181 VMALQDVVMTARGFRYREDLNQRLCEEAFIQALPHYQYIQ 220 >UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enterobacteriaceae RepID=C2LK81_PROMI Length = 235 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 135/229 (58%), Gaps = 2/229 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M Q R++DR+AVRLS +I+RL+AGE+L + LA EF VS RTL+RD RERL YL +E + Sbjct: 1 MFQTNRKYDRMAVRLSALIARLMAGESLVLSCLAQEFNVSERTLQRDLRERLAYLGVEGR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPV 119 G RL + DVL F + G+ LFPGLD RL+ LL +PC+I Sbjct: 61 QGCYRLPINTLKAYRDKDVLTFVKQIGMTRLFPGLDSRLLGLLLTQQPHAPCLIWHHAHK 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 S A F++L+ AIT ++ ++L+ RR L P +L+ + WYL+AE+ + V Sbjct: 121 ISALHADHFYQLVYAITSKQSISLLTPERRFNPLQPYQLIYREGQWYLLAEYYQQVHVLL 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228 L++I +QPL F ++ +L + FI ALPHFR I +LT +P+ Sbjct: 181 LEDIQQVQPLNTPFTPKHAVMQLSQQNSFIAALPHFRLIS-QVLTSLPS 228 >UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Providencia RepID=B2PW39_PROST Length = 229 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 119/221 (53%), Gaps = 2/221 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M Q RHDRL RL+ I++ L GETLS R LAAEF VS+RT++RDF ERL+YLD+E Q Sbjct: 1 MAQPSPRHDRLVHRLAYILTHLFKGETLSPRVLAAEFNVSLRTIQRDFHERLVYLDIEQQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM--CDESPCVIAPANP 118 RL S ++ D+L FA + + LFP LDR+L++ LL SP V+ A P Sbjct: 61 EEGYRLAGGQSALRTDSDILQFAQITDITPLFPVLDRKLLSLLLSRHAQGSPYVVYHAPP 120 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 PS F + QAI + + G+ +AP +L WY+ G I Sbjct: 121 KALPSVYGGFALITQAILDNQFIHYEIGGKTTHWVAPYKLTYFNGHWYVCGVMNGLIHAV 180 Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQ 219 L + + F+ + +L + + + FIQALPHF++I+ Sbjct: 181 ELLHLRDVGLSARHFKPDTALLQRMTERAFIQALPHFQYIK 221 >UniRef50_C9QRE5 Transcriptional regulator protein-like protein n=1 Tax=Escherichia coli DH1 RepID=C9QRE5_ECOD1 Length = 285 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 62/62 (100%), Positives = 62/62 (100%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ Sbjct: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 Query: 61 SG 62 SG Sbjct: 61 SG 62 >UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MBC8_9ENTR Length = 303 Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 99/216 (45%), Gaps = 10/216 (4%) Query: 7 RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66 RHD+L RL LI++RL GE+L++R LA EF V +T+RRD +RL YL+L Q L Sbjct: 3 RHDKLGYRLGLILTRLNNGESLTIRGLADEFNVCEKTIRRDLTKRLAYLNLHRQGKQYWL 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126 + D+ F G+ GLFP + RL+N LL E+ + P + + Sbjct: 63 PKGILGQRSNTDLRRFTRILGIEGLFPRWEDRLLNVLLGDTENNPFLIKKRPYENCGAFM 122 Query: 127 SFWRLIQ-AITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185 S I AI ++ + + P R++ + WYL A HEG + F + + Sbjct: 123 STLNAISGAIQASLKIAFTYKEKMFSATEPYRVVNDRGLWYLAARHEGTLKSFAVSTMTH 182 Query: 186 IQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS 221 +Q S R DPV Q + H I + Sbjct: 183 VQV---------SNMRFSPDPVVSQQVEHAESIWYG 209 >UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Campylobacter RepID=Q5HVJ9_CAMJR Length = 290 Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 3/202 (1%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 + +D+L++RL I+S+ GE+LS ++LA EF V RT++RD ERL ++ ++ ++G Sbjct: 2 KEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRYV 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 L + D+ FA SG+A L+P LD+ + LL + ++ Sbjct: 62 LESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDYE 121 Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185 L F L AI + + ++ ++ P +L+ ++ WYL+ + + F LD+I Sbjct: 122 L-FKDLSVAILKHNVLNFFYK-KKERQIKPYKLVNYKGIWYLLGDENDKLKHFNLDKISK 179 Query: 186 IQPLQETFRRNDSLCRLVE-DP 206 ++ E F N+ L ++ DP Sbjct: 180 LRTKNENFIPNEKLQEQIQNDP 201 >UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PXP5_PROST Length = 146 Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/144 (40%), Positives = 79/144 (54%), Gaps = 1/144 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M R++DR+A+RLS +I+RLVAGE L + LA EF V RTL+RD RERL YL +EY+ Sbjct: 1 MLPTNRKYDRMAMRLSALITRLVAGENLVLTDLACEFNVPARTLQRDLRERLAYLGVEYR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-LDRRLVNALLMCDESPCVIAPANPV 119 RL + DVL F + G+ LFPG R L L +P +I Sbjct: 61 KRVYRLPLNTLKAYRDKDVLTFVKQMGMTRLFPGLDSRLLNLLLSQRQHAPYLIWHHAHR 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTL 143 S A F++L+ AI G + +TL Sbjct: 121 TSAEHAEHFYQLVYAIIGYQHITL 144 >UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax=Campylobacter RepID=B9CZE1_WOLRE Length = 288 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 1/199 (0%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 R HD++ RLS I++RL +G L + +L EF V+ RT+ RDF ERL L ++ ++G Sbjct: 2 RSHDKIGFRLSRILTRLNSGARLGIDELVEEFNVNKRTILRDF-ERLSILPIQKENGKYF 60 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 L D+ FA G LFP LD R ++ +L + + S + Sbjct: 61 LEEYALGKLGFKDIKAFAALIGARSLFPELDDRFISDVLNEKLNKAYLIKNQGFESIQIS 120 Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185 + + A + R + +L P +L+ + WYL+A+ EG + FTL +I Sbjct: 121 RDDFEAVSAAVIKNRTLECEYNGKERKLNPYKLINNSGIWYLLADDEGKLKNFTLSKIKR 180 Query: 186 IQPLQETFRRNDSLCRLVE 204 I+ +TF N + +E Sbjct: 181 IKIKGDTFAANAEFLKRIE 199 >UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax=Proteobacteria RepID=A1VQX0_POLNA Length = 301 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 11/213 (5%) Query: 8 HDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLR 67 HD L RL+LI+ +L GE L + LA EF V++RT++RD ER YL LE G L Sbjct: 9 HDTLVYRLALILVKLNQGEKLDPQALADEFSVNLRTIQRDLNERFAYLPLEKTDGLYHLH 68 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA-L 126 DV FA +G+ GLFP L + + ++ + +G Sbjct: 69 PTFLGKLSTRDVERFASLAGVRGLFPSLSDDFLRDIFDTGIQASLLVKGHNYEHLAGKEA 128 Query: 127 SFWRLIQAITGRRRVTLIAEGRRCERLA------PCRLLIHQQTWYLVAEHEGHIAVFTL 180 +F +L QAI RR + E R+ E + P +L+ H+ WYL A+ G + F+ Sbjct: 129 NFRQLEQAIVTRRSIAF--EYRKDEGIKLYADVEPYKLMNHKGIWYLAAKDGGKLKTFSF 186 Query: 181 DEIHLIQPLQETFRRNDSLCR--LVEDPVFIQA 211 I + L F + S+ + L ED +++ Sbjct: 187 ARIERLVLLNAIFLPDPSVDKTLLEEDGIWLSG 219 >UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QCN2_SULNB Length = 307 Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 108/217 (49%), Gaps = 15/217 (6%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL----MYLD---L 57 ++ +D++ RL++I+SRL E LSV +LA EF VS RT++RDF ERL +Y D Sbjct: 4 KKDYDKILTRLTVILSRLYDREALSVTELAEEFNVSGRTIQRDFNERLISFPIYQDKKKW 63 Query: 58 EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117 + Q G+ + E Q+V D+ I + G F +L++ + D +P I Sbjct: 64 KMQDGFRIEKIKSIEEQLVLDI-IEKMTESIGGKFATTSHKLLSKIKNEDFNP--IYTKL 120 Query: 118 PVPSPSGALSFWRLIQ-AITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEHE 172 + S +LI+ AI + + E R + P +++ ++ WYLVA + Sbjct: 121 NIEDISDRFDDIQLIEKAIKDKTELECSYENEREGTFRANIQPLKIVNYEGFWYLVAFKD 180 Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209 G + + + + IQP +TF ++ + L+++ + I Sbjct: 181 GTVQKYYIKTLSNIQPTAKTFTVDEDIEELLKNSINI 217 >UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibrio splendidus 12B01 RepID=A3UTJ4_VIBSP Length = 296 Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 2/179 (1%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 + HD LA RL +I++RL GE L + +L+ EF VS RTL+RDF ERL YL ++ Sbjct: 5 KEHDTLAKRLGIILTRLNTGEKLYLEELSREFRVSERTLQRDFNERLNYLPIQRDGACYF 64 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 L Q +V + + G LF G L N +L +P + + S Sbjct: 65 LDPQALGRQSNNEVSLLLMKMGFDTLFSG-KHYLSNGVLNNKSTPPFLFKNPQIEDISKN 123 Query: 126 LS-FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183 S F +LI++I + + G+ + P RL+ + WYL H + + +I Sbjct: 124 ASVFEKLIESIQRKSTIGFTCNGKSYDEFHPYRLVNDRGHWYLAGTHRNRLESLRVAKI 182 >UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobacteria RepID=Q1QC98_PSYCK Length = 300 Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 16/200 (8%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSG--Y 63 R+H+RLA RLS II RL GE L++ +LA + VS+RTL+RDF++RL L+L Y+ G + Sbjct: 4 RKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLEL-YEEGPQF 62 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123 RL + + D+ FA + + L P +DR+ L + + + S Sbjct: 63 YRLHPSNIGYLDIADIQRFASFASVQDLLPKIDRQFFQEKL----NQSIFVKGFAYENIS 118 Query: 124 GALSFWRLI-QAITGRRRVTLI--------AEGRRCERLAPCRLLIHQQTWYLVAEHEGH 174 +R I QAIT + + + + L P LL WY+V G Sbjct: 119 ERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPYHLLNKNGIWYVVGRLHGQ 178 Query: 175 IAVFTLDEIHLIQPLQETFR 194 F ++ + ETF+ Sbjct: 179 TRTFCFTQMTQLHINTETFQ 198 >UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Tax=Acinetobacter RepID=B7GVE1_ACIB3 Length = 303 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 13/177 (7%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL------MY 54 M ++ + H+RLA RL+ II+RL GE L +L +FGV+ +T++RD ERL + Sbjct: 1 MVKSLKAHERLAERLANIITRLNRGEYLDSNELTLDFGVTKKTIQRDI-ERLSIAGLPLV 59 Query: 55 LDLEYQSGYCRLRTAGSEMQMVP-DVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVI 113 +D + + Y G ++ P D+ FA SG+ GL+P LD + LL S Sbjct: 60 IDEKTRKFYLGANYVG---KISPQDIQNFAQLSGITGLYPNLDLSFLRELLDSRSSEVYA 116 Query: 114 APANPVPSPSGALSFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVA 169 A + + ++LI +AI R+++T + + P +L+ H +WYL A Sbjct: 117 AKGYFFENTTHFSELFKLIREAIQDRKQITF-QYNSKLRTVQPYKLIHHHGSWYLAA 172 >UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibrio RepID=D2YQU2_VIBMI Length = 290 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 5/178 (2%) Query: 7 RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66 + ++LA RLS I+SRL AGE LS+ L EFGV RT+ RDF RL +L +E + GY L Sbjct: 3 KSEKLAYRLSQILSRLYAGEKLSLIDLEQEFGVHERTVLRDF-NRLAFLPIEREEGYYYL 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126 + L G+ LFP DR+ + L ++P ++ P+ + Sbjct: 62 KQLDHRNPKAHKALHALSNMGIDKLFP--DRKTMTQAL-NHKTPSILFRHIPIEDSARFR 118 Query: 127 SFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183 LI AI R +TL RR ++ P +L+ + WYL+A F + EI Sbjct: 119 DTLILIADAIHQRNTLTLTFHNRRYHQMEPYQLINERGYWYLIAAQRTQPHSFRVAEI 176 >UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-turn-helix domain-containing protein n=3 Tax=Pasteurellaceae RepID=B8F3U1_HAEPS Length = 295 Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 13/202 (6%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 +++ LA RLS I+S+L G+ + + +LA +FGVSVRT++RD ++RL +L+ E +SG Sbjct: 2 QKNTVLAQRLSEILSQLNQGKRIDINQLAEDFGVSVRTIQRDIKDRLAFLEWE-ESGPRH 60 Query: 66 LRTAGSEMQMVP--DVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123 + ++ ++ D+ FA + ++ LFP +DR L + V Sbjct: 61 YKINRYKLGILSQQDISRFALFASISDLFPKVDRDFYQEKL----TDSVKVKGFQYEDIR 116 Query: 124 GALSFWRLI-QAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 + ++LI QAI + + + + + ++AP L+ WYL+ E Sbjct: 117 HLDNEFQLIKQAIEAHKFIDFLYKKSGQIDGKFYKIAPYSLINKNGIWYLIGTDEDKQKT 176 Query: 178 FTLDEIHLIQPLQETFRRNDSL 199 F +I +++ L ETF N L Sbjct: 177 FCFTQITMLKMLDETFEPNQQL 198 >UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter RepID=D0SAP6_ACIJO Length = 301 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 89/195 (45%), Gaps = 22/195 (11%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL--- 57 M + H+RLA RL+ I+++L G L V +LA EF VS RT+ RDF YL L Sbjct: 1 MKRKASTHERLAERLANILTKLNTGYQLGVAELAHEFQVSTRTIERDFDRLNTYLPLFQD 60 Query: 58 EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117 EY Y ++ D+ FA SG++ L+P LD + LL DE AN Sbjct: 61 EYTKKYFLDPVYLGRFKL-QDIQNFAQLSGISELYPSLDMTFLRGLL--DER------AN 111 Query: 118 PVPSPSG---------ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLV 168 V S G A F AI R++++ I + P RL+ HQ +WYL Sbjct: 112 QVFSAKGYYYENAQQFAEHFQVFAGAIHKRQKISFIYND-LLRHVDPYRLIHHQGSWYLA 170 Query: 169 AEHEGHIAVFTLDEI 183 A + + L +I Sbjct: 171 AAVADELRAYRLSKI 185 >UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZH4_ACIDE Length = 306 Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 9/212 (4%) Query: 9 DRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRT 68 D +A RL+ I+ RL GE L L EFGV++RT++RD +R +LDL + G + Sbjct: 9 DTIAYRLTEILRRLNEGEALDPHALVEEFGVNLRTIQRDLNQRFAFLDLVKKDGRYTIDR 68 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPVPSPSGALS 127 + + DV FA +GL GL P L + +L +S +I N + Sbjct: 69 SRLGTLTLHDVQRFASLAGLQGLHPRLSTGFLRDILDTRLQSALLIRGHNYEDLHNKESE 128 Query: 128 FWRLIQAITGRRRVTL------IAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLD 181 F +L QA R V+ + + + P +L+ WYL A G + + Sbjct: 129 FNQLKQAAQQHRVVSFEYRKPDSTAAKLVDDIRPYKLVNQDGIWYLAATDAGKPKSYAVS 188 Query: 182 EIHLIQPLQETFRRNDSLCRLV--EDPVFIQA 211 I + L +TF + ++ + + ED V+++ Sbjct: 189 RIERLLVLADTFTPDPAVLQQIANEDSVWLKT 220 >UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 Tax=Vibrio parahaemolyticus AQ4037 RepID=UPI0001BC6CCB Length = 286 Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 16/192 (8%) Query: 7 RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66 + ++LA+RL I++RL GE LS +L A++ VS +TLRRDF ERL+ + + RL Sbjct: 4 KSEKLALRLGDILTRLFMGEVLSPEQLVADYQVSEKTLRRDFNERLVNAPIIRTNEGYRL 63 Query: 67 R--TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 T + VL H +GL+ L P N +P + NP G Sbjct: 64 DPVTRNNGNANTNKVL---HDTGLSALLP-------NHYKFNGHTPVLF--KNPRSESIG 111 Query: 125 ALS--FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDE 182 F +L + IT + L G+ E P RL+ + W+L A + + + L Sbjct: 112 KFDALFRQLTEVITTHSVIDLTYNGKTFESAHPYRLVNDRGIWFLAATYCDQLHSYRLPN 171 Query: 183 IHLIQPLQETFR 194 I I ++ ++ Sbjct: 172 ISRIHRREDKYK 183 >UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibrio shilonii AK1 RepID=A6D7H7_9VIBR Length = 255 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 14/161 (8%) Query: 36 EFGVSVRTLRRDFRERLMYLD-LEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG 94 E+GVS +TLRRDF +RL+ ++ GY S +L SGL+ L P Sbjct: 3 EYGVSEKTLRRDFNQRLINTPIMKTAHGYQLENQLNSSYVTTKRIL---DDSGLSSLLPP 59 Query: 95 LDRRLVNALLMCDESPCVIAPANPVPSPSGALS--FWRLIQAITGRRRVTLIAEGRRCER 152 SP I NP + F ++ AIT R + L +GR + Sbjct: 60 KHN--------ISTSPSTILFKNPRIEDTHKFDGVFTQINSAITSRTIIDLTYQGRLITQ 111 Query: 153 LAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETF 193 + P RL+ + WYL G + + L ++ I ++ + Sbjct: 112 VHPYRLVNDRGIWYLSGVASGQLYSYRLAKVSQIHTAEDKY 152 >UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PXB7_PROST Length = 286 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 15/201 (7%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGS 71 VRL+ II + +LA+ F VS RT+ RD + L+ + S Y T Sbjct: 9 GVRLATIILEAYLYGEVDKYELASRFKVSERTIYRDLNSLNLILEHKGNSKYG-FSTVVE 67 Query: 72 EMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL---SF 128 +M+ G+ P + + ++ ++ V+ N + + + Sbjct: 68 YYKMISFF-------GIDKYLPDFSQSFLKSIPETIQNRSVLIKFNGIEHKIKSYLKTHY 120 Query: 129 WRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQP 188 R+ AI +R ++ + + + P +L+ H WYL A EG + F+L+ I + Sbjct: 121 ERIRYAIDNKRECHILYKSKN-RTIYPYKLICHNTIWYLNAIEEGKLKSFSLNRIEWLDV 179 Query: 189 LQETFRRNDSLCRLV---EDP 206 ++TF ++++ ++ +DP Sbjct: 180 SKKTFLPDNNIVNMLMESKDP 200 >UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 Tax=Vitreoscilla sp. RepID=O85446_9NEIS Length = 190 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 11/181 (6%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-LEYQSGYCRLRT 68 +LA RLS I+ L +G+ LS LA ++GVS++T++RD +RL L LE + L T Sbjct: 7 KLAERLSAILVDLHSGQRLSAHGLAEKYGVSLKTIKRDLGQRLDNLPWLETGPQFYCLDT 66 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG-ALS 127 + + + F + + LFP D+ ++ LL ++ + G Sbjct: 67 QQMQHTNLETLTRFCWFAAIKELFPPKDQAFLDNLL----KDHILVKGLKYENIQGLKQQ 122 Query: 128 FWRLIQAITGRRRVTL----IAEGR-RCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDE 182 F +L QAI V I E + + +AP L+ WY++ +G + + Sbjct: 123 FLQLEQAIDLYHMVYFDYCKINEKQAKPYTIAPYGLVNKNGIWYVIGLDQGREKTYNFVQ 182 Query: 183 I 183 I Sbjct: 183 I 183 >UniRef50_B2PXP4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PXP4_PROST Length = 64 Score = 44.7 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 168 VAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226 +AE+ + VF L++I ++PL TF ++ +L + FI ALPHFR I L+ + Sbjct: 1 MAEYHQKVHVFLLEDIQSVKPLSSTFIPQKNINQLSQQNSFIAALPHFRLISQLLMPLI 59 >UniRef50_A5Z6R5 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z6R5_9FIRM Length = 105 Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL-DLEYQSGYCRLRTAGSE 72 I RL+ GE +SVR+LA E+ VS +T+ RD E YL + EY++G ++ + E Sbjct: 13 IFFRLLKGEFVSVRQLADEYSVSGKTVSRDINEIRAYLSENEYRNGNAQIEYSHRE 68 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P52133 Uncharacterized HTH-type transcriptional regulat... 316 4e-85 UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providenc... 264 2e-69 UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yers... 262 8e-69 UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteria... 258 1e-67 UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providenc... 257 3e-67 UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enter... 255 1e-66 UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia c... 254 1e-66 UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherich... 243 3e-63 UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Provide... 243 3e-63 UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Provide... 241 2e-62 UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 T... 236 4e-61 UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax... 234 2e-60 UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax... 224 2e-57 UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Cam... 219 5e-56 UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibri... 216 4e-55 UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax... 213 5e-54 UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-tu... 203 5e-51 UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobac... 195 7e-49 UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter ... 194 2e-48 UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibr... 192 8e-48 UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Ta... 188 8e-47 UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 T... 184 2e-45 UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp.... 183 6e-45 UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 ... 179 7e-44 UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Provide... 167 3e-40 UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibr... 153 4e-36 UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Provide... 153 6e-36 UniRef50_C9QRE5 Transcriptional regulator protein-like protein n... 113 7e-24 Sequences not found previously or not previously below threshold: UniRef50_A4W669 Regulatory protein, DeoR n=3 Tax=Enterobacteriac... 110 4e-23 UniRef50_B9KCA9 Putative uncharacterized protein n=1 Tax=Campylo... 94 3e-18 UniRef50_A8S168 Putative uncharacterized protein n=1 Tax=Clostri... 92 2e-17 UniRef50_Q0AX84 YobV n=1 Tax=Syntrophomonas wolfei subsp. wolfei... 85 2e-15 UniRef50_C9AAC3 Transcriptional regulator n=3 Tax=Enterococcus c... 84 3e-15 UniRef50_C6SP18 Putative uncharacterized protein n=2 Tax=Strepto... 83 7e-15 UniRef50_C9LWR7 HTH domain protein n=1 Tax=Selenomonas sputigena... 83 7e-15 UniRef50_Q2LTY7 Predicted transcriptional regulator, DeoR family... 82 2e-14 UniRef50_Q7X2G0 Putative repressor n=3 Tax=Streptomyces RepID=Q7... 81 3e-14 UniRef50_UPI0001C37EC6 helix-turn-helix type 11 domain-containin... 80 6e-14 UniRef50_Q5WD79 Transcriptional regulator n=5 Tax=Bacillus RepID... 80 6e-14 UniRef50_D1B1H8 Putative uncharacterized protein n=1 Tax=Sulfuro... 80 6e-14 UniRef50_UPI0001C425E1 hypothetical protein BpOF4_16355 n=1 Tax=... 80 7e-14 UniRef50_A6P211 Putative uncharacterized protein n=5 Tax=Bacteri... 80 9e-14 UniRef50_C6D6M2 Helix-turn-helix type 11 domain protein n=1 Tax=... 79 1e-13 UniRef50_A4J6Q1 Transcriptional regulator-like protein n=2 Tax=P... 79 1e-13 UniRef50_A7GBR0 Putative uncharacterized protein n=10 Tax=Bacter... 79 1e-13 UniRef50_C6PMV9 Helix-turn-helix type 11 domain protein n=1 Tax=... 78 3e-13 UniRef50_C9XKH2 DeoR-family transcriptional regulator n=4 Tax=Cl... 77 4e-13 UniRef50_Q92EJ5 Lin0464 protein n=2 Tax=Firmicutes RepID=Q92EJ5_... 77 5e-13 UniRef50_C0CTB1 Putative uncharacterized protein n=4 Tax=Firmicu... 77 5e-13 UniRef50_D2Q3M3 Helix-turn-helix type 11 domain protein n=1 Tax=... 77 7e-13 UniRef50_C1SIZ5 Predicted transcriptional regulator, COG2378 n=1... 77 7e-13 UniRef50_Q5WCJ1 Transcriptional regulator n=1 Tax=Bacillus claus... 76 8e-13 UniRef50_B2JN46 Helix-turn-helix type 11 domain protein n=4 Tax=... 76 8e-13 UniRef50_C7NAI6 Helix-turn-helix type 11 domain protein n=3 Tax=... 76 8e-13 UniRef50_C1SHC7 Putative uncharacterized protein n=1 Tax=Denitro... 76 8e-13 UniRef50_Q65LG5 Hypothetical DNA-binding protein n=1 Tax=Bacillu... 76 9e-13 UniRef50_C6PV47 Helix-turn-helix type 11 domain protein n=2 Tax=... 75 2e-12 UniRef50_Q8F269 Transcription regulator n=2 Tax=Leptospira inter... 75 2e-12 UniRef50_Q9S3S5 Putative uncharacterized protein n=1 Tax=Enteroc... 75 2e-12 UniRef50_A3CLM4 Putative uncharacterized protein n=2 Tax=Strepto... 75 2e-12 UniRef50_D0MGR2 Helix-turn-helix type 11 domain protein n=1 Tax=... 75 2e-12 UniRef50_C0EAB2 Putative uncharacterized protein n=1 Tax=Clostri... 74 3e-12 UniRef50_B8DCU5 HTH domain family n=6 Tax=Listeria monocytogenes... 74 3e-12 UniRef50_C5REL4 Helix-turn-helix type 11 domain protein n=1 Tax=... 74 4e-12 UniRef50_A0AFG8 Complete genome n=16 Tax=Listeria RepID=A0AFG8_L... 74 4e-12 UniRef50_C9MZ16 HTH domain protein n=1 Tax=Leptotrichia hofstadi... 74 4e-12 UniRef50_UPI0001788164 Helix-turn-helix type 11 domain protein n... 73 6e-12 UniRef50_A7VYA2 Putative uncharacterized protein n=1 Tax=Clostri... 73 6e-12 UniRef50_C6CRF1 Helix-turn-helix type 11 domain protein n=1 Tax=... 73 8e-12 UniRef50_C3L2F0 Transcription regulator n=4 Tax=Clostridium RepI... 73 8e-12 UniRef50_B2T6R2 Helix-turn-helix type 11 domain protein n=4 Tax=... 73 1e-11 UniRef50_B1C6Z1 Putative uncharacterized protein n=1 Tax=Anaerof... 72 1e-11 UniRef50_A7ZBV9 HTH domain family n=1 Tax=Campylobacter concisus... 72 1e-11 UniRef50_C4FVK8 Putative uncharacterized protein n=2 Tax=Catonel... 72 2e-11 UniRef50_C6D7L1 Helix-turn-helix type 11 domain protein n=1 Tax=... 71 2e-11 UniRef50_A9B2R1 Helix-turn-helix type 11 domain protein n=2 Tax=... 71 2e-11 UniRef50_B2V022 DeoR-family transcriptional regulator n=5 Tax=Cl... 71 2e-11 UniRef50_A6VRC7 Helix-turn-helix type 11 domain protein n=3 Tax=... 71 2e-11 UniRef50_C2U625 Helix-turn-helix type 11 domain protein n=2 Tax=... 71 2e-11 UniRef50_D1PN27 Transcriptional regulator, DeoR family n=3 Tax=C... 71 2e-11 UniRef50_UPI0001789548 Helix-turn-helix type 11 domain protein n... 71 3e-11 UniRef50_B3QT91 Putative uncharacterized protein n=1 Tax=Chloroh... 71 3e-11 UniRef50_A9KRE5 Helix-turn-helix type 11 domain protein n=1 Tax=... 70 5e-11 UniRef50_A8LFK5 Helix-turn-helix type 11 domain protein n=5 Tax=... 70 5e-11 UniRef50_A6F2P0 Transcriptional regulator, DeoR family protein n... 70 5e-11 UniRef50_C3XIJ3 Aspartate ammonia-lyase n=1 Tax=Helicobacter bil... 70 5e-11 UniRef50_A4XCA7 Helix-turn-helix, type 11 domain protein n=7 Tax... 70 6e-11 UniRef50_Q9RY95 Repressor protein, putative n=1 Tax=Deinococcus ... 70 8e-11 UniRef50_C0ZCT1 Putative transcriptional regulator n=1 Tax=Brevi... 70 8e-11 UniRef50_D0RTY4 DeoR-family transcriptional regulator n=3 Tax=St... 69 1e-10 UniRef50_C9NKS1 Helix-turn-helix type 11 domain protein n=5 Tax=... 69 1e-10 UniRef50_B1BVT1 Transcriptional regulator, DeoR family n=3 Tax=B... 69 1e-10 UniRef50_C1IA92 Transcription regulator n=1 Tax=Clostridium sp. ... 69 1e-10 UniRef50_B8FUA6 Helix-turn-helix type 11 domain protein n=3 Tax=... 69 1e-10 UniRef50_C5EHW4 Helix-turn-helix type 11 domain-containing prote... 69 1e-10 UniRef50_B0N590 Putative uncharacterized protein n=2 Tax=Bacteri... 69 1e-10 UniRef50_Q1JX03 Helix-turn-helix, type 11 n=1 Tax=Desulfuromonas... 68 2e-10 UniRef50_D2Q2S8 Helix-turn-helix type 11 domain protein n=2 Tax=... 68 2e-10 UniRef50_B5HKG2 Truncated DeoR-family transcriptional regulator ... 68 2e-10 UniRef50_A0QS56 DeoR-family protein transcriptional regulator n=... 68 2e-10 UniRef50_A9KM28 Helix-turn-helix type 11 domain protein n=2 Tax=... 68 2e-10 UniRef50_A8SDS7 Putative uncharacterized protein n=1 Tax=Faecali... 68 2e-10 UniRef50_A3CLQ0 Transcriptional regulator, putative n=3 Tax=Stre... 68 3e-10 UniRef50_D2QLY3 Helix-turn-helix type 11 domain protein n=1 Tax=... 68 3e-10 UniRef50_B9M6Q6 Helix-turn-helix type 11 domain protein n=5 Tax=... 68 3e-10 UniRef50_UPI000050FDF4 DeoR family transcriptional regulator n=1... 67 4e-10 UniRef50_B8FW42 Helix-turn-helix type 11 domain protein n=3 Tax=... 67 4e-10 UniRef50_A6DE69 Transcriptional regulator, putative n=1 Tax=Cami... 67 5e-10 UniRef50_B7HZL2 HTH domain family n=31 Tax=Bacillus RepID=B7HZL2... 67 5e-10 UniRef50_B4UYC1 Helix-turn-helix type 11 domain containing prote... 66 6e-10 UniRef50_C6D1B9 Helix-turn-helix type 11 domain protein n=1 Tax=... 66 7e-10 UniRef50_B2A042 Helix-turn-helix type 11 domain protein n=1 Tax=... 66 7e-10 UniRef50_B1CBH7 Putative uncharacterized protein n=1 Tax=Anaerof... 66 7e-10 UniRef50_B0MJK4 Putative uncharacterized protein n=1 Tax=Anaeros... 66 7e-10 UniRef50_B1I4N6 Regulatory protein, DeoR n=1 Tax=Candidatus Desu... 66 9e-10 UniRef50_Q897M9 Conserved protein n=2 Tax=Clostridium RepID=Q897... 66 9e-10 UniRef50_C6CXS9 Helix-turn-helix type 11 domain protein n=1 Tax=... 66 1e-09 UniRef50_D2QV53 Helix-turn-helix type 11 domain protein n=1 Tax=... 66 1e-09 UniRef50_B3PHR5 Predicted transcriptional regulator n=1 Tax=Cell... 66 1e-09 UniRef50_C0A8I4 Helix-turn-helix, type 11 domain protein n=1 Tax... 66 1e-09 UniRef50_A9AWW0 Helix-turn-helix type 11 domain protein n=1 Tax=... 66 1e-09 UniRef50_B5D329 Putative uncharacterized protein n=1 Tax=Bactero... 66 1e-09 UniRef50_C4KYJ3 Helix-turn-helix type 11 domain protein n=1 Tax=... 66 1e-09 UniRef50_Q0S564 Possible transcriptional regulator n=4 Tax=Rhodo... 65 1e-09 UniRef50_B0MYF1 Putative uncharacterized protein n=1 Tax=Alistip... 65 2e-09 UniRef50_C9RCX8 Transcriptional regulator-like protein n=1 Tax=A... 65 2e-09 UniRef50_O34920 Uncharacterized HTH-type transcriptional regulat... 65 2e-09 UniRef50_A9KIF8 Helix-turn-helix type 11 domain protein n=1 Tax=... 65 2e-09 UniRef50_D1AKN4 Helix-turn-helix type 11 domain protein n=1 Tax=... 65 2e-09 UniRef50_A8MEN8 Helix-turn-helix type 11 domain protein n=14 Tax... 65 3e-09 UniRef50_D1ARJ4 Helix-turn-helix type 11 domain protein n=1 Tax=... 65 3e-09 UniRef50_A9AUR2 Helix-turn-helix type 11 domain protein n=1 Tax=... 65 3e-09 UniRef50_C4DT59 Predicted transcriptional regulator, COG2378 n=1... 65 3e-09 UniRef50_UPI0001B58C22 helix-turn-helix type 11 domain-containin... 65 3e-09 UniRef50_C8WKG8 Helix-turn-helix type 11 domain protein n=1 Tax=... 64 3e-09 UniRef50_C2KY98 Transcriptional regulator n=5 Tax=Clostridiales ... 64 3e-09 UniRef50_UPI00019790EA hypothetical protein HcinC1_09731 n=1 Tax... 64 3e-09 UniRef50_UPI0001789485 Helix-turn-helix type 11 domain protein n... 64 4e-09 UniRef50_C6CS13 Helix-turn-helix type 11 domain protein n=3 Tax=... 64 4e-09 UniRef50_A4C3H1 Predicted transcriptional regulator n=2 Tax=Gamm... 64 4e-09 UniRef50_Q65L70 Hypothetical DNA-binding protein n=1 Tax=Bacillu... 64 4e-09 UniRef50_A6LYP1 Helix-turn-helix, type 11 domain protein n=1 Tax... 64 4e-09 UniRef50_C7PP77 Helix-turn-helix type 11 domain protein n=3 Tax=... 64 5e-09 UniRef50_B9YCC8 Putative uncharacterized protein n=1 Tax=Holdema... 64 5e-09 UniRef50_B5GB15 DeoR-family protein transcriptional regulator n=... 63 6e-09 UniRef50_A0NRK1 Predicted transcriptional regulator n=2 Tax=Labr... 63 6e-09 UniRef50_C6CXH2 Helix-turn-helix type 11 domain protein n=2 Tax=... 63 7e-09 UniRef50_UPI0001B564E6 helix-turn-helix type 11 domain-containin... 63 7e-09 UniRef50_Q73PY5 Transcriptional regulator, putative n=1 Tax=Trep... 63 8e-09 UniRef50_A1ALA5 Helix-turn-helix, type 11 domain protein n=1 Tax... 63 9e-09 UniRef50_A9E8Y8 Helix-turn-helix, type 11 n=1 Tax=Oceanibulbus i... 63 9e-09 UniRef50_A4SCA5 Putative uncharacterized protein n=1 Tax=Chlorob... 63 1e-08 UniRef50_A5I226 DeoR-family transcriptional regulator n=13 Tax=C... 63 1e-08 UniRef50_UPI0001788CE6 Helix-turn-helix type 11 domain protein n... 63 1e-08 UniRef50_Q73PA8 Transcriptional regulator, putative n=2 Tax=Bact... 63 1e-08 UniRef50_C0C4Y8 Putative uncharacterized protein n=1 Tax=Clostri... 62 1e-08 UniRef50_B8DYL9 Putative uncharacterized protein n=1 Tax=Dictyog... 62 1e-08 UniRef50_C7PEN6 Helix-turn-helix type 11 domain protein n=1 Tax=... 62 1e-08 UniRef50_D2BDS4 DeoR family transcriptional regulator n=2 Tax=Ac... 62 2e-08 UniRef50_C0CXX2 Putative uncharacterized protein n=1 Tax=Clostri... 62 2e-08 UniRef50_B1C2N9 Putative uncharacterized protein n=1 Tax=Clostri... 62 2e-08 UniRef50_C8PRK5 HTH domain protein n=1 Tax=Treponema vincentii A... 62 2e-08 UniRef50_A3I1Q3 Putative deoR-family transcriptional regulator n... 61 2e-08 UniRef50_UPI0001BC5E8A helix-turn-helix, type 11 domain-containi... 61 2e-08 UniRef50_C5BVH8 Helix-turn-helix type 11 domain protein n=1 Tax=... 61 2e-08 UniRef50_D1B1L2 Transcriptional regulator protein-like protein n... 61 2e-08 UniRef50_C7Q8N4 Helix-turn-helix type 11 domain protein n=12 Tax... 61 2e-08 UniRef50_D2PRW1 Helix-turn-helix type 11 domain protein n=1 Tax=... 61 3e-08 UniRef50_C2G2T1 Helix-turn-helix, type 11 domain protein n=2 Tax... 61 3e-08 UniRef50_A4FQS7 DeoR-family transcriptional regulator n=3 Tax=Ac... 61 3e-08 UniRef50_Q15PY3 Helix-turn-helix, type 11 n=1 Tax=Pseudoalteromo... 61 3e-08 UniRef50_A0RAF1 Putative uncharacterized protein n=10 Tax=Bacill... 61 4e-08 UniRef50_D2B9H3 DeoR family transcriptional regulator n=3 Tax=Ac... 61 4e-08 UniRef50_C3WQ96 Transcriptional regulator n=3 Tax=Fusobacterium ... 60 5e-08 UniRef50_A0R9T5 Transcriptional regulator, DeoR family n=74 Tax=... 60 5e-08 UniRef50_D1C4L3 Helix-turn-helix type 11 domain protein n=1 Tax=... 60 6e-08 UniRef50_C6PB22 Putative uncharacterized protein n=1 Tax=Thermoa... 60 8e-08 UniRef50_C4RGC2 Putative uncharacterized protein n=1 Tax=Micromo... 60 9e-08 UniRef50_C8XGJ6 Helix-turn-helix type 11 domain protein n=1 Tax=... 60 1e-07 UniRef50_C0ZIU8 Putative uncharacterized protein n=2 Tax=Bacilla... 59 1e-07 UniRef50_A1SPT5 Helix-turn-helix, type 11 domain protein n=2 Tax... 59 1e-07 UniRef50_D0GJW0 HTH domain superfamily n=1 Tax=Leptotrichia good... 59 1e-07 UniRef50_B1HUW4 YobV n=2 Tax=Bacillaceae RepID=B1HUW4_LYSSC 59 1e-07 UniRef50_A6W4U4 Helix-turn-helix type 11 domain protein n=3 Tax=... 59 1e-07 UniRef50_D1CGQ4 Helix-turn-helix type 11 domain protein n=1 Tax=... 59 2e-07 UniRef50_A9AVG2 Helix-turn-helix type 11 domain protein n=1 Tax=... 59 2e-07 UniRef50_Q1VU46 Putative transcriptional regulator n=1 Tax=Psych... 59 2e-07 UniRef50_B0MGX9 Putative uncharacterized protein n=2 Tax=Clostri... 58 2e-07 UniRef50_B2PXP4 Putative uncharacterized protein n=1 Tax=Provide... 58 2e-07 UniRef50_C2SK93 Putative uncharacterized protein n=1 Tax=Bacillu... 58 2e-07 UniRef50_C4LIK8 Putative uncharacterized protein n=1 Tax=Coryneb... 58 2e-07 UniRef50_Q30U25 Putative uncharacterized protein n=1 Tax=Sulfuri... 58 2e-07 UniRef50_C6D6Y8 Helix-turn-helix type 11 domain protein n=7 Tax=... 58 3e-07 UniRef50_D2R1Q3 Helix-turn-helix type 11 domain protein n=1 Tax=... 58 3e-07 UniRef50_D1A246 Helix-turn-helix type 11 domain protein n=3 Tax=... 58 3e-07 UniRef50_B1YFZ6 Helix-turn-helix type 11 domain protein n=1 Tax=... 58 3e-07 UniRef50_Q82JJ5 Putative DeoR-family transcriptional regulator n... 58 3e-07 UniRef50_Q2S472 Putative DeoR-family transcriptional regulator n... 58 4e-07 UniRef50_C3JIV6 DeoR-family transcriptional regulator n=2 Tax=Rh... 58 4e-07 UniRef50_UPI000185D3A7 conserved hypothetical protein n=1 Tax=Ca... 57 4e-07 UniRef50_C5BNS8 HTH domain protein n=2 Tax=Gammaproteobacteria R... 57 4e-07 UniRef50_C3QKP9 Transcriptional regulator n=2 Tax=Bacteroides Re... 57 4e-07 UniRef50_C4Z6L6 Putative uncharacterized protein n=2 Tax=Clostri... 57 4e-07 UniRef50_D0L3I9 Helix-turn-helix type 11 domain protein n=1 Tax=... 57 4e-07 UniRef50_Q11UB6 Transcriptional regulator, DeoR family n=7 Tax=B... 57 4e-07 UniRef50_A5FLV0 Helix-turn-helix, type 11 domain protein n=3 Tax... 57 4e-07 UniRef50_D0LH85 Putative DeoR-family transcriptional regulator n... 57 4e-07 UniRef50_A8W027 Regulatory protein GntR, HTH n=1 Tax=Bacillus se... 57 5e-07 UniRef50_A4FF91 DeoR-family transcriptional regulator n=17 Tax=B... 57 5e-07 UniRef50_B9XP79 Helix-turn-helix, type 11 domain protein n=1 Tax... 57 6e-07 UniRef50_Q3JYW1 Putative uncharacterized protein n=2 Tax=Strepto... 57 6e-07 UniRef50_A4BKA3 Predicted transcriptional regulator n=1 Tax=Rein... 57 6e-07 UniRef50_C2C3S2 Transcriptional regulator n=1 Tax=Listeria grayi... 56 6e-07 UniRef50_A8FE45 Possible transcriptional regulator n=2 Tax=Bacil... 56 7e-07 UniRef50_Q03GJ9 Predicted transcriptional regulator n=7 Tax=Bact... 56 7e-07 UniRef50_UPI000185CDFC conserved hypothetical protein n=1 Tax=Ca... 56 7e-07 UniRef50_Q11X99 Transcriptional regulator, DeoR family n=2 Tax=S... 56 7e-07 UniRef50_C0ZA21 Putative transcriptional regulator n=1 Tax=Brevi... 56 7e-07 UniRef50_D1BRS2 Helix-turn-helix type 11 domain protein n=2 Tax=... 56 8e-07 UniRef50_Q12H80 Helix-turn-helix, type 11 n=7 Tax=Proteobacteria... 56 8e-07 UniRef50_C7NJB0 Predicted transcriptional regulator n=1 Tax=Kyto... 56 1e-06 UniRef50_UPI0001794C37 hypothetical protein CLOSPO_01499 n=1 Tax... 56 1e-06 UniRef50_C8X624 Helix-turn-helix type 11 domain protein n=1 Tax=... 56 1e-06 UniRef50_A4SCA2 Helix-turn-helix, type 11 domain protein n=7 Tax... 56 1e-06 UniRef50_C1I3X2 Putative uncharacterized protein (Fragment) n=1 ... 55 1e-06 UniRef50_A5TXA7 Possible transcriptional regulator n=2 Tax=Fusob... 55 2e-06 UniRef50_B1QLR3 HTH domain protein n=9 Tax=Clostridium RepID=B1Q... 55 2e-06 UniRef50_C1ZFR8 Predicted transcriptional regulator, COG2378 n=1... 55 2e-06 UniRef50_Q74H44 Putative uncharacterized protein n=1 Tax=Geobact... 55 2e-06 UniRef50_D2PY48 Helix-turn-helix type 11 domain protein n=6 Tax=... 55 2e-06 UniRef50_D2BDR8 Helix-turn-helix type 11 domain protein n=9 Tax=... 55 2e-06 UniRef50_A7GU32 Helix-turn-helix type 11 domain protein n=2 Tax=... 55 2e-06 UniRef50_UPI0001C30F15 Helix-turn-helix type 11 domain protein n... 55 2e-06 UniRef50_A6C2W1 GntR family transcriptional regulator n=1 Tax=Pl... 55 2e-06 UniRef50_D1CH46 Helix-turn-helix type 11 domain protein n=1 Tax=... 55 2e-06 UniRef50_UPI000051035F putative DeoR family transcriptional regu... 55 2e-06 UniRef50_B2A7V3 Helix-turn-helix type 11 domain protein n=1 Tax=... 55 2e-06 UniRef50_C8QWX3 Transcriptional regulator-like protein n=1 Tax=D... 55 2e-06 UniRef50_C9YTR3 Putative transcriptional regulator n=8 Tax=Strep... 55 2e-06 UniRef50_Q7MF56 Predicted transcriptional regulator n=10 Tax=Vib... 55 3e-06 UniRef50_B8CYA6 Helix-turn-helix type 11 domain protein n=1 Tax=... 55 3e-06 UniRef50_UPI0001C317F2 transcriptional regulator protein-like pr... 54 3e-06 UniRef50_A9DPV5 Transcriptional regulator, DeoR family protein n... 54 3e-06 UniRef50_Q65MX4 Putative uncharacterized protein n=2 Tax=Bacillu... 54 3e-06 UniRef50_B9DII5 Putative uncharacterized protein n=1 Tax=Staphyl... 54 4e-06 UniRef50_A6VRZ4 Helix-turn-helix type 11 domain protein n=1 Tax=... 54 4e-06 UniRef50_C1YQ17 Predicted transcriptional regulator, COG2378 n=2... 54 4e-06 UniRef50_A9WUI5 Transcriptional regulator n=1 Tax=Renibacterium ... 54 4e-06 UniRef50_Q1DCK6 Putative uncharacterized protein n=2 Tax=Cystoba... 54 4e-06 UniRef50_Q0S1T7 Probable transcriptional regulator, DeoR family ... 54 4e-06 >UniRef50_P52133 Uncharacterized HTH-type transcriptional regulator yfjR n=15 Tax=Enterobacteriaceae RepID=YFJR_ECOLI Length = 233 Score = 316 bits (810), Expect = 4e-85, Method: Composition-based stats. Identities = 233/233 (100%), Positives = 233/233 (100%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ Sbjct: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP Sbjct: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL Sbjct: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180 Query: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE Sbjct: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233 >UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BF5E Length = 441 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M + E R+DRLA+RL++++SRL GE+L++ +LA EFGVS RT++RD RERL YLD EY Sbjct: 217 MPKQEHRYDRLAIRLAILVSRLFMGESLNISQLAQEFGVSGRTVQRDLRERLRYLDTEYI 276 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119 G+ LR A + D+L FA + +A FP LD +L++ LL + SPC+I P Sbjct: 277 DGHVSLRDARGPFRTNSDILRFAQITSVAHYFPVLDPKLLSVLLDNRQDSPCIIWNDPPR 336 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 +P F ++Q+I R + + +AP RL+ H WYL A + I VFT Sbjct: 337 QAPELFGGFQVIVQSIIRNRLIRFLHRKHLQSSIAPYRLICHDGEWYLAAVSKDRIQVFT 396 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 L I + +F RN + R+++DP F++ALPHF +I + Sbjct: 397 LSAITDVVMTASSFARNRHIDRILQDPRFMRALPHFDYISGII 439 >UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SV45_YERFR Length = 229 Score = 262 bits (669), Expect = 8e-69, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M++ +DRLAVRL+LII RL GE LS+ LA+EF VS RTLRRDF +RL+YLDLE Sbjct: 1 MSEVSMHYDRLAVRLALIIGRLFMGEGLSINALASEFNVSPRTLRRDFNQRLIYLDLEQV 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPV 119 G RL + + D++ FA + +A FP LD +L++ LL + SP V+ A P Sbjct: 61 DGIYRLAKSHIGSRTDGDIIHFARVTHMAQFFPALDSKLLSVLLNKNVGSPYVVYHAPPK 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 P+ F+R+ QAI V L +G LAP RL+ WYLV EH + VF Sbjct: 121 NPPALFGGFYRITQAIIDNVFVELSVQGNEYFNLAPYRLVYFDGYWYLVGEHNLTLQVFL 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 L I + F + + + L + FI+ALPHF+F+++ + Sbjct: 181 LIHITDVTLTPRRFTKKEYITALTAEADFIKALPHFQFVRNLV 223 >UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteriaceae RepID=B1IPS8_ECOLC Length = 237 Score = 258 bits (659), Expect = 1e-67, Method: Composition-based stats. Identities = 119/224 (53%), Positives = 150/224 (66%), Gaps = 2/224 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+QAERR+DRL+VRLSLIISRL+AGETL++RKLAAEFGVS RTL RDFRERL+YLDLEYQ Sbjct: 1 MSQAERRYDRLSVRLSLIISRLLAGETLNMRKLAAEFGVSERTLHRDFRERLIYLDLEYQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVIAPANPV 119 G CRL T G + + FA +SG LFP +D LVN+LL D SPC+I Sbjct: 61 DGCCRLLTGGRQEIREEAAMQFARQSGTGALFPDMDHHLVNSLLSSKDSSPCLIWHPGAS 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 + S F RL++A++ R+VTL+A+G RC+ LAP RL+ W+LV EH I VF Sbjct: 121 VTSSRPGIFTRLVRAVSENRKVTLLADGCRCDNLAPYRLIFSTGGWFLVGEHLARITVFA 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 L +H + ETF + R++ P F+QALPHF + HSLL Sbjct: 181 LHTVHSVTFHAETFTPDGHFTRILSHPDFLQALPHFH-VFHSLL 223 >UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C349A5 Length = 225 Score = 257 bits (656), Expect = 3e-67, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+ + RHDRLA RL+ IIS+L GET+ + L+ E VS RTLRRDF ERL YLDLEY Sbjct: 1 MSTSVSRHDRLASRLAFIISQLFRGETVYLSALSEELNVSTRTLRRDFNERLQYLDLEYH 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM-CDESPCVIAPANPV 119 G RL + + D+L FA + + LFP LDR+L+ LL +SP ++ P Sbjct: 61 QGGYRLAASQRPFRTDKDILRFAAITHITSLFPALDRKLLTVLLDPTIDSPFIVYHTPPE 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 PS F+ L QAI RR + +G+ +AP +L+ + WYL A+ HI VF Sbjct: 121 QRPSLFGGFYILTQAIVKRRLLQFAHQGKNITNVAPYKLIYYHGHWYLAADIAQHIHVFD 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 + + + FR + L + + + FIQALPH+++IQ + Sbjct: 181 VMALQDVVMTARGFRYREDLNQRLCEEAFIQALPHYQYIQSLV 223 >UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enterobacteriaceae RepID=C2LK81_PROMI Length = 235 Score = 255 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 94/229 (41%), Positives = 135/229 (58%), Gaps = 2/229 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M Q R++DR+AVRLS +I+RL+AGE+L + LA EF VS RTL+RD RERL YL +E + Sbjct: 1 MFQTNRKYDRMAVRLSALIARLMAGESLVLSCLAQEFNVSERTLQRDLRERLAYLGVEGR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPV 119 G RL + DVL F + G+ LFPGLD RL+ LL +PC+I Sbjct: 61 QGCYRLPINTLKAYRDKDVLTFVKQIGMTRLFPGLDSRLLGLLLTQQPHAPCLIWHHAHK 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 S A F++L+ AIT ++ ++L+ RR L P +L+ + WYL+AE+ + V Sbjct: 121 ISALHADHFYQLVYAITSKQSISLLTPERRFNPLQPYQLIYREGQWYLLAEYYQQVHVLL 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228 L++I +QPL F ++ +L + FI ALPHFR I +LT +P+ Sbjct: 181 LEDIQQVQPLNTPFTPKHAVMQLSQQNSFIAALPHFRLIS-QVLTSLPS 228 >UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia coli RepID=Q4FBD3_ECOLX Length = 226 Score = 254 bits (650), Expect = 1e-66, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 136/226 (60%), Gaps = 3/226 (1%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+ RHDRLAVRLSLIISRL+ GE+LS++ L+ EFGV+ RTL+RDF +RL++LDLEY+ Sbjct: 1 MSDNRSRHDRLAVRLSLIISRLMTGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119 +G LR S +P++L F +G+A + P + RL+ L E SPC+I P Sbjct: 61 NGRYSLRRQSSP-GAIPEMLSFIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPD 119 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 + + F +LI AI ++L+AE R L PCRL+ + +WYL+A +G + VF Sbjct: 120 ITATFPECFSQLILAIRQCIHISLMAE-RWYPSLEPCRLIYYSGSWYLIALQKGKLQVFP 178 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 L +I + E F R + LV + FI ALPHF FI + TF Sbjct: 179 LADIKSVSLTSERFERRGHIHNLVAEERFISALPHFSFIHKLINTF 224 >UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherichia coli 83972 RepID=C2DJQ1_ECOLX Length = 238 Score = 243 bits (621), Expect = 3e-63, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 135/226 (59%), Gaps = 2/226 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M HDRL+VRLS+IISRL+AGE+L ++ LA EFGVS RTL+RDF++RL++LDLE++ Sbjct: 12 MKTQHDHHDRLSVRLSVIISRLLAGESLELKVLADEFGVSERTLQRDFQQRLIHLDLEHR 71 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL-LMCDESPCVIAPANPV 119 SG RL + + +P+ F SG++G+ P +R+L+ + SPC+I Sbjct: 72 SGSYRL-IRQTGREHLPNTFAFIRNSGISGIIPAQNRKLIRLIASNSGVSPCLIGHGALS 130 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 + F +L +AI R VTL+ G+ E +AP RL+ + W+LVA ++ VF Sbjct: 131 SPVTQTACFLKLAEAIRDYRAVTLLVNGKSYEAVAPRRLIFQSKNWFLVATRTRNLQVFR 190 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 +++++ + L +FRR L L FI ALPHFRFI + TF Sbjct: 191 MEDVNAVTVLDTSFRRKPELDALTASEEFISALPHFRFISDVIQTF 236 >UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PWJ3_PROST Length = 231 Score = 243 bits (621), Expect = 3e-63, Method: Composition-based stats. Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M + + RHDRLA+RLSLIISRL+AGETLS+R LA EFGVS RT++RD ERL +LDL Sbjct: 1 MKKQDTRHDRLAMRLSLIISRLLAGETLSLRALANEFGVSERTIQRDLHERLSHLDLVSN 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCV-IAPANP 118 L + + PD+ F + GLA FPGL R+ VN L+ D PC ++P Sbjct: 61 EAGYCLS-STLTVWRTPDLFSFLQKVGLASYFPGLTRKTVNHLVQSDLHFPCFMLSPFET 119 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 S F++LIQAIT V + + L P RL ++++ WYL+ ++ V Sbjct: 120 EFSSCDGECFYQLIQAITQHFIVQVKQKEGIYLHLEPYRLALYERAWYLIGYASPYVRVI 179 Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 L I + + FRR +CRL P FI ALPHF FIQH + Sbjct: 180 PLHHIQSVHITEIPFRRRKEICRLSSTPEFISALPHFEFIQHVIN 224 >UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Providencia RepID=B2PW39_PROST Length = 229 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M Q RHDRL RL+ I++ L GETLS R LAAEF VS+RT++RDF ERL+YLD+E Q Sbjct: 1 MAQPSPRHDRLVHRLAYILTHLFKGETLSPRVLAAEFNVSLRTIQRDFHERLVYLDIEQQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC--DESPCVIAPANP 118 RL S ++ D+L FA + + LFP LDR+L++ LL SP V+ A P Sbjct: 61 EEGYRLAGGQSALRTDSDILQFAQITDITPLFPVLDRKLLSLLLSRHAQGSPYVVYHAPP 120 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 PS F + QAI + + G+ +AP +L WY+ G I Sbjct: 121 KALPSVYGGFALITQAILDNQFIHYEIGGKTTHWVAPYKLTYFNGHWYVCGVMNGLIHAV 180 Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 L + + F+ + +L + + + FIQALPHF++I+ L Sbjct: 181 ELLHLRDVGLSARHFKPDTALLQRMTERAFIQALPHFQYIKGIL 224 >UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MBC8_9ENTR Length = 303 Score = 236 bits (603), Expect = 4e-61, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 10/217 (4%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 RHD+L RL LI++RL GE+L++R LA EF V +T+RRD +RL YL+L Q Sbjct: 2 DRHDKLGYRLGLILTRLNNGESLTIRGLADEFNVCEKTIRRDLTKRLAYLNLHRQGKQYW 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 L + D+ F G+ GLFP + RL+N LL E+ + P + Sbjct: 62 LPKGILGQRSNTDLRRFTRILGIEGLFPRWEDRLLNVLLGDTENNPFLIKKRPYENCGAF 121 Query: 126 LSFWRLIQ-AITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIH 184 +S I AI ++ + + P R++ + WYL A HEG + F + + Sbjct: 122 MSTLNAISGAIQASLKIAFTYKEKMFSATEPYRVVNDRGLWYLAARHEGTLKSFAVSTMT 181 Query: 185 LIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS 221 +Q F DPV Q + H I + Sbjct: 182 HVQVSNMRFSP---------DPVVSQQVEHAESIWYG 209 >UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax=Proteobacteria RepID=A1VQX0_POLNA Length = 301 Score = 234 bits (597), Expect = 2e-60, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 7/215 (3%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGY 63 HD L RL+LI+ +L GE L + LA EF V++RT++RD ER YL LE G Sbjct: 5 TAAHHDTLVYRLALILVKLNQGEKLDPQALADEFSVNLRTIQRDLNERFAYLPLEKTDGL 64 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123 L DV FA +G+ GLFP L + + ++ + + Sbjct: 65 YHLHPTFLGKLSTRDVERFASLAGVRGLFPSLSDDFLRDIFDTGIQASLLVKGHNYEHLA 124 Query: 124 GAL-SFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 G +F +L QAI RR + + + P +L+ H+ WYL A+ G + F Sbjct: 125 GKEANFRQLEQAIVTRRSIAFEYRKDEGIKLYADVEPYKLMNHKGIWYLAAKDGGKLKTF 184 Query: 179 TLDEIHLIQPLQETFRRNDSLCR--LVEDPVFIQA 211 + I + L F + S+ + L ED +++ Sbjct: 185 SFARIERLVLLNAIFLPDPSVDKTLLEEDGIWLSG 219 >UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZH4_ACIDE Length = 306 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 9/220 (4%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M D +A RL+ I+ RL GE L L EFGV++RT++RD +R +LDL + Sbjct: 1 MPTPSDPRDTIAYRLTEILRRLNEGEALDPHALVEEFGVNLRTIQRDLNQRFAFLDLVKK 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 G + + + DV FA +GL GL P L + +L ++ + Sbjct: 61 DGRYTIDRSRLGTLTLHDVQRFASLAGLQGLHPRLSTGFLRDILDTRLQSALLIRGHNYE 120 Query: 121 S-PSGALSFWRLIQAITGRRRVTLIAEG------RRCERLAPCRLLIHQQTWYLVAEHEG 173 + F +L QA R V+ + + + P +L+ WYL A G Sbjct: 121 DLHNKESEFNQLKQAAQQHRVVSFEYRKPDSTAAKLVDDIRPYKLVNQDGIWYLAATDAG 180 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLV--EDPVFIQA 211 + + I + L +TF + ++ + + ED V+++ Sbjct: 181 KPKSYAVSRIERLLVLADTFTPDPAVLQQIANEDSVWLKT 220 >UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Campylobacter RepID=Q5HVJ9_CAMJR Length = 290 Score = 219 bits (559), Expect = 5e-56, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 2/204 (0%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 + +D+L++RL I+S+ GE+LS ++LA EF V RT++RD ERL ++ ++ ++G Sbjct: 2 KEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRYV 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 L + D+ FA SG+A L+P LD+ + LL + ++ Sbjct: 62 LESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDYE 121 Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185 L F L AI + + ++ ++ P +L+ ++ WYL+ + + F LD+I Sbjct: 122 L-FKDLSVAILKHNVLNFFYK-KKERQIKPYKLVNYKGIWYLLGDENDKLKHFNLDKISK 179 Query: 186 IQPLQETFRRNDSLCRLVEDPVFI 209 ++ E F N+ L +++ I Sbjct: 180 LRTKNENFIPNEKLQEQIQNDPNI 203 >UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibrio splendidus 12B01 RepID=A3UTJ4_VIBSP Length = 296 Score = 216 bits (551), Expect = 4e-55, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 2/213 (0%) Query: 3 QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSG 62 + + HD LA RL +I++RL GE L + +L+ EF VS RTL+RDF ERL YL ++ Sbjct: 2 RRMKEHDTLAKRLGIILTRLNTGEKLYLEELSREFRVSERTLQRDFNERLNYLPIQRDGA 61 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 L Q +V + + G LF G L N +L +P + + Sbjct: 62 CYFLDPQALGRQSNNEVSLLLMKMGFDTLFSGK-HYLSNGVLNNKSTPPFLFKNPQIEDI 120 Query: 123 SGALS-FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLD 181 S S F +LI++I + + G+ + P RL+ + WYL H + + Sbjct: 121 SKNASVFEKLIESIQRKSTIGFTCNGKSYDEFHPYRLVNDRGHWYLAGTHRNRLESLRVA 180 Query: 182 EIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214 +I + ++ + + ++ + + LPH Sbjct: 181 KIRELVRYEDKYSPDLNVEYKLTGRGYKDELPH 213 >UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax=Campylobacter RepID=B9CZE1_WOLRE Length = 288 Score = 213 bits (542), Expect = 5e-54, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 1/202 (0%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 R HD++ RLS I++RL +G L + +L EF V+ RT+ RDF ERL L ++ ++G Sbjct: 2 RSHDKIGFRLSRILTRLNSGARLGIDELVEEFNVNKRTILRDF-ERLSILPIQKENGKYF 60 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 L D+ FA G LFP LD R ++ +L + + S + Sbjct: 61 LEEYALGKLGFKDIKAFAALIGARSLFPELDDRFISDVLNEKLNKAYLIKNQGFESIQIS 120 Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185 + + A + R + +L P +L+ + WYL+A+ EG + FTL +I Sbjct: 121 RDDFEAVSAAVIKNRTLECEYNGKERKLNPYKLINNSGIWYLLADDEGKLKNFTLSKIKR 180 Query: 186 IQPLQETFRRNDSLCRLVEDPV 207 I+ +TF N + +E Sbjct: 181 IKIKGDTFAANAEFLKRIEKND 202 >UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-turn-helix domain-containing protein n=3 Tax=Pasteurellaceae RepID=B8F3U1_HAEPS Length = 295 Score = 203 bits (516), Expect = 5e-51, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 11/212 (5%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-GYC 64 +++ LA RLS I+S+L G+ + + +LA +FGVSVRT++RD ++RL +L+ E + Sbjct: 2 QKNTVLAQRLSEILSQLNQGKRIDINQLAEDFGVSVRTIQRDIKDRLAFLEWEESGPRHY 61 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 ++ + D+ FA + ++ LFP +DR L + V Sbjct: 62 KINRYKLGILSQQDISRFALFASISDLFPKVDRDFYQEKL----TDSVKVKGFQYEDIRH 117 Query: 125 ALSFWRLI-QAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 + ++LI QAI + + + + + ++AP L+ WYL+ E F Sbjct: 118 LDNEFQLIKQAIEAHKFIDFLYKKSGQIDGKFYKIAPYSLINKNGIWYLIGTDEDKQKTF 177 Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210 +I +++ L ETF N L ++ I Sbjct: 178 CFTQITMLKMLDETFEPNQQLQEEIKSNDSIS 209 >UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobacteria RepID=Q1QC98_PSYCK Length = 300 Score = 195 bits (497), Expect = 7e-49, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 14/214 (6%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-EYQSG 62 R+H+RLA RLS II RL GE L++ +LA + VS+RTL+RDF++RL L+L E Sbjct: 2 KLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGPQ 61 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 + RL + + D+ FA + + L P +DR+ L + + + Sbjct: 62 FYRLHPSNIGYLDIADIQRFASFASVQDLLPKIDRQFFQEKL----NQSIFVKGFAYENI 117 Query: 123 SGALSFWRLI-QAITGRRRVTLIA--------EGRRCERLAPCRLLIHQQTWYLVAEHEG 173 S +R I QAIT + + + L P LL WY+V G Sbjct: 118 SERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPYHLLNKNGIWYVVGRLHG 177 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207 F ++ + ETF+ ++ + + D Sbjct: 178 QTRTFCFTQMTQLHINTETFQCSEDIKKETLDTD 211 >UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter RepID=D0SAP6_ACIJO Length = 301 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 5/226 (2%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M + H+RLA RL+ I+++L G L V +LA EF VS RT+ RDF YL L Sbjct: 1 MKRKASTHERLAERLANILTKLNTGYQLGVAELAHEFQVSTRTIERDFDRLNTYLPLFQD 60 Query: 61 S--GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP 118 L + D+ FA SG++ L+P LD + LL + A Sbjct: 61 EYTKKYFLDPVYLGRFKLQDIQNFAQLSGISELYPSLDMTFLRGLLDERANQVFSAKGYY 120 Query: 119 VPSPSGA-LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 + F AI R++++ I + P RL+ HQ +WYL A + Sbjct: 121 YENAQQFAEHFQVFAGAIHKRQKISFIYND-LLRHVDPYRLIHHQGSWYLAAAVADELRA 179 Query: 178 FTLDEIHLIQPLQ-ETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 + L +I + + E F + + +E I H + ++ S+ Sbjct: 180 YRLSKIDQVVVHESELFDHHLEVLTQLELSEGIWFAKHKQTVKISV 225 >UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibrio RepID=D2YQU2_VIBMI Length = 290 Score = 192 bits (488), Expect = 8e-48, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 5/202 (2%) Query: 7 RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66 + ++LA RLS I+SRL AGE LS+ L EFGV RT+ RDF RL +L +E + GY L Sbjct: 3 KSEKLAYRLSQILSRLYAGEKLSLIDLEQEFGVHERTVLRDFN-RLAFLPIEREEGYYYL 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126 + L G+ LFP DR+ + L +P ++ P+ + Sbjct: 62 KQLDHRNPKAHKALHALSNMGIDKLFP--DRKTMTQALNHK-TPSILFRHIPIEDSARFR 118 Query: 127 SFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185 LI AI R +TL RR ++ P +L+ + WYL+A F + EI Sbjct: 119 DTLILIADAIHQRNTLTLTFHNRRYHQMEPYQLINERGYWYLIAAQRTQPHSFRVAEIAE 178 Query: 186 IQPLQETFRRNDSLCRLVEDPV 207 I + + + L + Sbjct: 179 IIRHDDIYTPSPILSEKLTREE 200 >UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Tax=Acinetobacter RepID=B7GVE1_ACIB3 Length = 303 Score = 188 bits (479), Expect = 8e-47, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 14/220 (6%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY--LDL- 57 M ++ + H+RLA RL+ II+RL GE L +L +FGV+ +T++RD ERL L L Sbjct: 1 MVKSLKAHERLAERLANIITRLNRGEYLDSNELTLDFGVTKKTIQRDI-ERLSIAGLPLV 59 Query: 58 --EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 E + L D+ FA SG+ GL+P LD + LL S A Sbjct: 60 IDEKTRKFY-LGANYVGKISPQDIQNFAQLSGITGLYPNLDLSFLRELLDSRSSEVYAAK 118 Query: 116 ANPVPSPSGALSFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGH 174 + + ++LI +AI R+++T + + P +L+ H +WYL A Sbjct: 119 GYFFENTTHFSELFKLIREAIQDRKQITFQYNSKL-RTVQPYKLIHHHGSWYLAAVSNDQ 177 Query: 175 IA--VFTLDEIH---LIQPLQETFRRNDSLCRLVEDPVFI 209 + + L I IQ + F + + + +++ I Sbjct: 178 LQLRAYRLSRIGKDCQIQYHLDHFEPDIEIIKQLKNEESI 217 >UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 Tax=Vibrio parahaemolyticus AQ4037 RepID=UPI0001BC6CCB Length = 286 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64 + ++LA+RL I++RL GE LS +L A++ VS +TLRRDF ERL+ + + Sbjct: 2 SDKSEKLALRLGDILTRLFMGEVLSPEQLVADYQVSEKTLRRDFNERLVNAPIIRTNEGY 61 Query: 65 RLRTAGS--EMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 RL VL +GL+ L P N +P + NP Sbjct: 62 RLDPVTRNNGNANTNKVLH---DTGLSALLP-------NHYKFNGHTPVLF--KNPRSES 109 Query: 123 SGALS--FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180 G F +L + IT + L G+ E P RL+ + W+L A + + + L Sbjct: 110 IGKFDALFRQLTEVITTHSVIDLTYNGKTFESAHPYRLVNDRGIWFLAATYCDQLHSYRL 169 Query: 181 DEIHLIQPLQETFRRNDSLCRLV 203 I I ++ ++ + + + Sbjct: 170 PNISRIHRREDKYKPSQKVHEEI 192 >UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QCN2_SULNB Length = 307 Score = 183 bits (464), Expect = 6e-45, Method: Composition-based stats. Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 15/217 (6%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-------L 57 ++ +D++ RL++I+SRL E LSV +LA EF VS RT++RDF ERL+ Sbjct: 4 KKDYDKILTRLTVILSRLYDREALSVTELAEEFNVSGRTIQRDFNERLISFPIYQDKKKW 63 Query: 58 EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117 + Q G+ + E Q+V D++ + G F +L++ + D +P I Sbjct: 64 KMQDGFRIEKIKSIEEQLVLDIIE-KMTESIGGKFATTSHKLLSKIKNEDFNP--IYTKL 120 Query: 118 PVPSPSGALSFWRLIQ-AITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEHE 172 + S +LI+ AI + + E R + P +++ ++ WYLVA + Sbjct: 121 NIEDISDRFDDIQLIEKAIKDKTELECSYENEREGTFRANIQPLKIVNYEGFWYLVAFKD 180 Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209 G + + + + IQP +TF ++ + L+++ + I Sbjct: 181 GTVQKYYIKTLSNIQPTAKTFTVDEDIEELLKNSINI 217 >UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 Tax=Vitreoscilla sp. RepID=O85446_9NEIS Length = 190 Score = 179 bits (454), Expect = 7e-44, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 11/186 (5%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-EYQSGYCRLRT 68 +LA RLS I+ L +G+ LS LA ++GVS++T++RD +RL L E + L T Sbjct: 7 KLAERLSAILVDLHSGQRLSAHGLAEKYGVSLKTIKRDLGQRLDNLPWLETGPQFYCLDT 66 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG-ALS 127 + + + F + + LFP D+ ++ LL ++ + G Sbjct: 67 QQMQHTNLETLTRFCWFAAIKELFPPKDQAFLDNLL----KDHILVKGLKYENIQGLKQQ 122 Query: 128 FWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDE 182 F +L QAI V + + +AP L+ WY++ +G + + Sbjct: 123 FLQLEQAIDLYHMVYFDYCKINEKQAKPYTIAPYGLVNKNGIWYVIGLDQGREKTYNFVQ 182 Query: 183 IHLIQP 188 I + Sbjct: 183 ISNVVF 188 >UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PXB7_PROST Length = 286 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 83/198 (41%), Gaps = 12/198 (6%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGS 71 VRL+ II + +LA+ F VS RT+ RD + L+ + S T Sbjct: 9 GVRLATIILEAYLYGEVDKYELASRFKVSERTIYRDLNSLNLILEHKGNSK-YGFSTVVE 67 Query: 72 EMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL---SF 128 +M+ G+ P + + ++ ++ V+ N + + + Sbjct: 68 YYKMISFF-------GIDKYLPDFSQSFLKSIPETIQNRSVLIKFNGIEHKIKSYLKTHY 120 Query: 129 WRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQP 188 R+ AI +R ++ + + + P +L+ H WYL A EG + F+L+ I + Sbjct: 121 ERIRYAIDNKRECHILYKSKN-RTIYPYKLICHNTIWYLNAIEEGKLKSFSLNRIEWLDV 179 Query: 189 LQETFRRNDSLCRLVEDP 206 ++TF ++++ ++ + Sbjct: 180 SKKTFLPDNNIVNMLMES 197 >UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibrio shilonii AK1 RepID=A6D7H7_9VIBR Length = 255 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 14/170 (8%) Query: 35 AEFGVSVRTLRRDFRERLMYLDL-EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFP 93 E+GVS +TLRRDF +RL+ + + GY S +L SGL+ L P Sbjct: 2 EEYGVSEKTLRRDFNQRLINTPIMKTAHGYQLENQLNSSYVTTKRIL---DDSGLSSLLP 58 Query: 94 GLDRRLVNALLMCDESPCVIAPANPVPSPSGALS--FWRLIQAITGRRRVTLIAEGRRCE 151 SP I NP + F ++ AIT R + L +GR Sbjct: 59 PKH--------NISTSPSTILFKNPRIEDTHKFDGVFTQINSAITSRTIIDLTYQGRLIT 110 Query: 152 RLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201 ++ P RL+ + WYL G + + L ++ I ++ + + + Sbjct: 111 QVHPYRLVNDRGIWYLSGVASGQLYSYRLAKVSQIHTAEDKYYPDPKVLE 160 >UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PXP5_PROST Length = 146 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M R++DR+A+RLS +I+RLVAGE L + LA EF V RTL+RD RERL YL +EY+ Sbjct: 1 MLPTNRKYDRMAMRLSALITRLVAGENLVLTDLACEFNVPARTLQRDLRERLAYLGVEYR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-LDRRLVNALLMCDESPCVIAPANPV 119 RL + DVL F + G+ LFPG R L L +P +I Sbjct: 61 KRVYRLPLNTLKAYRDKDVLTFVKQMGMTRLFPGLDSRLLNLLLSQRQHAPYLIWHHAHR 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA 145 S A F++L+ AI G + +TL Sbjct: 121 TSAEHAEHFYQLVYAIIGYQHITLPY 146 >UniRef50_C9QRE5 Transcriptional regulator protein-like protein n=1 Tax=Escherichia coli DH1 RepID=C9QRE5_ECOD1 Length = 285 Score = 113 bits (282), Expect = 7e-24, Method: Composition-based stats. Identities = 62/62 (100%), Positives = 62/62 (100%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ Sbjct: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 Query: 61 SG 62 SG Sbjct: 61 SG 62 >UniRef50_A4W669 Regulatory protein, DeoR n=3 Tax=Enterobacteriaceae RepID=A4W669_ENT38 Length = 303 Score = 110 bits (275), Expect = 4e-23, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 71/207 (34%), Gaps = 7/207 (3%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 MT R R A RL I+ L + L +F ++ RT+ RD L + Sbjct: 1 MTTPARS--RSAERLVDILMELHINGVVHRSDLMQKFKITERTVYRDLNA-LSPIVQHAG 57 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 +G RL A + A+ FP L E ++ N Sbjct: 58 NGQYRLIHATPSSRGQGLHNAVANLLNADSFFPDRGAAFWQNLESRVEENHILILNNDAE 117 Query: 121 SPSGAL---SFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 + ++I R + + + + P +L+ + WYL A G + Sbjct: 118 HTVQKDIRLYLTAIEKSIKNRHVCQITYKDKT-RSVNPYKLINKKNIWYLQATENGRLKS 176 Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVE 204 F+L +I +ETF + L+E Sbjct: 177 FSLSQISWFDIQKETFILDPHTQELLE 203 >UniRef50_B9KCA9 Putative uncharacterized protein n=1 Tax=Campylobacter lari RM2100 RepID=B9KCA9_CAMLR Length = 306 Score = 94.2 bits (233), Expect = 3e-18, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 9/199 (4%) Query: 14 RLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTA-GS 71 RL ++ +LV E +++++LA E VS +T++RD + + L R+ T+ + Sbjct: 15 RLEVLYEKLVKSENGITIKELAQELNVSAKTIKRDMQGVFEPMGLIKNGRKWRIDTSKDT 74 Query: 72 EMQMVPDVLIFAHRS---GLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSF 128 + Q +++ + F L++ L +P + +F Sbjct: 75 QEQDDEKIILEVLDTMAKSAGNSFYAKAHPLLSKLSQNISNPIHTSLDAEKLEEKDLNNF 134 Query: 129 WRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEH---EGHIAVFTLDEIHL 185 L QAI + ++ E + + P +L WYL+A F L I Sbjct: 135 QILEQAINTKTQIVFKYENKLF-QAKPLKLAFFSGFWYLLAFDMKKRDIFKKFYLKNIQN 193 Query: 186 IQPLQETFRRNDSLCRLVE 204 I QE F+ ++SL ++ Sbjct: 194 ITLTQEHFQTDESLEIKLQ 212 >UniRef50_A8S168 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S168_9CLOT Length = 302 Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 21/202 (10%) Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRTAGSE 72 I+ L+ E ++ +LA EFGVSVRT+ RD +Y+ + G L + Sbjct: 9 ILYILLNNERVTAPELAEEFGVSVRTIYRDIDTMSAAGIPIYMQGGRKGGIYLLEGYRLD 68 Query: 73 MQMVPDVLIFAHRSGLAGL----FPGLDRRLVNA--LLMCDESPCVIAP----ANPVPSP 122 + L GL +P +D L+ L M + + Sbjct: 69 KVTLSKTEQAEILLALQGLGAVQYPDIDPVLLKLGALFMSQDRDWIDVDLTRWGTAETVH 128 Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE--HEGHIA 176 F L +AITG RR+ + + P +L+ + WYL Sbjct: 129 RDKELFSILRKAITGLRRIHFEYYSAKGEMTVRTVEPAKLIYRCRAWYLAGYCLMRQEPR 188 Query: 177 VFTLDEIHLIQPLQETFRRNDS 198 VF L + +E F + Sbjct: 189 VFRLSRMKKTGLTEELFEYSPE 210 >UniRef50_Q0AX84 YobV n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX84_SYNWW Length = 311 Score = 85.0 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 76/212 (35%), Gaps = 30/212 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSG---------Y 63 RL II L+ E + ++LA FGVSVRT+ RD L + + G Sbjct: 5 RLISIIIVLLRRERVQAKELAEMFGVSVRTILRDVDTINLGGIPIITYQGVNGGISIAEG 64 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-----LDRRLVN-------ALLMCDESPC 111 RL + + ++ G+A P L +L N LL Sbjct: 65 YRLDKSVLSAGDMATLIS--TLKGVAASIPDSRFDILAEKLKNPLSTSQLELLDLKSRQM 122 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167 +I + + L QAI R + R ++ P LL+ Q+WYL Sbjct: 123 IIDLSPWGTNEQLKGKITLLRQAIENYREIEFAYIDAAGTRSIRQVEPYALLLKGQSWYL 182 Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRND 197 A +F L I +Q + T++ + Sbjct: 183 FAWCLLRQDFRLFKLIRIKNLQLVNITYQPRE 214 >UniRef50_C9AAC3 Transcriptional regulator n=3 Tax=Enterococcus casseliflavus RepID=C9AAC3_ENTCA Length = 302 Score = 84.2 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 17/199 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL +I L+ E + +LA +F VS RT+ RD +Y + G L + Sbjct: 5 RLFGLIYHLLNHEKATTSELAKQFEVSTRTITRDINTLSSIGVPIYTETGRNGGVYLLSS 64 Query: 69 AGSEMQMVPDVLI---FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS---- 121 + ++ + G+ L P + + + L + P + Sbjct: 65 FVLDKVLLSEEERKNLLLALKGIRQLTPQISGQSLAKLQSLFKQPDADWLEVDFSTWHRR 124 Query: 122 PSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGH--IA 176 +G +F L ++I +T +G + P +LL Q WYL A + Sbjct: 125 ENGNDTFDLLKKSILTNHVITFDYISKQGLQKRICQPYKLLFRSQAWYLQAFDQQKNAFR 184 Query: 177 VFTLDEIHLIQPLQETFRR 195 F + + + + F Sbjct: 185 TFKISRMSQVHVTDQHFFP 203 >UniRef50_C6SP18 Putative uncharacterized protein n=2 Tax=Streptococcus mutans RepID=C6SP18_STRMN Length = 307 Score = 83.0 bits (204), Expect = 7e-15, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 19/237 (8%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLE----YQSGYCRLR 67 RL I+S L ++ ++LA +F VS RT+ RD + + G+ ++ Sbjct: 4 ERLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGFSLMK 63 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDR----RLVNALLMCDESPCV----IAPANPV 119 + +++ S L GL + L+ LL ES + I ++ Sbjct: 64 NYQIDKRILSKADTKNLYSALKGLQSIKQQPELIALIAKLLPEGESNPLADYDINFSSWY 123 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174 L +AI G+ V L GRR ++ P +L+ WYL A Sbjct: 124 TDSLIQKKIEILQEAIEGKSCVLLDYISSSGRRKRKIEPYQLVFKDSAWYLHAFCHKRQA 183 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ-ALPHFRFIQHSLLTFVPADS 230 +F L + + L+E F ++ + +L +LT+ P D+ Sbjct: 184 FRLFKLRRMASLTLLEEKFTGRPYPALTLKSTAYSDFSLEPVEGYDKVVLTYHPEDA 240 >UniRef50_C9LWR7 HTH domain protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LWR7_9FIRM Length = 308 Score = 83.0 bits (204), Expect = 7e-15, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 29/220 (13%) Query: 3 QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLM----YL 55 Q + D + RL + RL GE LS R+LA ++ VS +T++RD RE L YL Sbjct: 2 QTDTHADNRSYRLLDLYKRLQQGEALSKRELADQYRVSEKTVQRDIEGLREYLAGEQSYL 61 Query: 56 DLEY--QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-LDRRLVNALLMCDES--- 109 ++ Y ++G R+ +E +V + FP + +RL+ LL Sbjct: 62 EVVYDKEAGGYRISRESAEGLQPEEVFAVCKILLESRPFPKAVMQRLLGKLLSQVSREKR 121 Query: 110 ----PCVIAPANPVPSPSGALS----FWRLIQAITGRRRVTLIAEG----RRCERLAPCR 157 + + P WRL AI +R + + P Sbjct: 122 DVVEKLIAQETHHYTEPQHGRDVIPALWRLAAAIREQRITSFSYTRLDGVCHERVVKPVA 181 Query: 158 LLIHQQTWYLVAEH----EGHIAVFTLDEIHLIQPLQETF 193 +L + +YL+A + + VF +D + I +E F Sbjct: 182 ILFSEFYFYLIAYYADDSADYPIVFRIDRMEKISVKKERF 221 >UniRef50_Q2LTY7 Predicted transcriptional regulator, DeoR family n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LTY7_SYNAS Length = 346 Score = 81.5 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 76/202 (37%), Gaps = 16/202 (7%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR--ERLMYLDLEYQSGYCRLRTAG 70 +RL I+ + + +S L+ F ++ RT++RD + + E Q G RL Sbjct: 44 IRLGQILRVFLDKDRVSSIWLSRNFQITPRTIQRDLAALKESGFPIHEIQKGVYRLGKDL 103 Query: 71 SEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDES-PCVIAPANPVPSP 122 + V D A L + F L N+L S P + + P Sbjct: 104 IKNLEVFDETELALVITLRNVVGQLGRPFQKAADGLFNSLYDAASSMPVYVRMDESI--P 161 Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRRCERL--APCRLLIHQQTWYLVAEHEGH--IAVF 178 + R++++I ++ + + ++ P R++ WYLV + G I + Sbjct: 162 LDSSLLNRIVKSIRLKKIAGFYYKSGKPHQVNMEPYRVVHFGGFWYLVGKDTGDSVIKRY 221 Query: 179 TLDEIHLIQPLQETFRRNDSLC 200 LD I + + FR+ Sbjct: 222 ALDRISDFKMARTPFRKIPENL 243 >UniRef50_Q7X2G0 Putative repressor n=3 Tax=Streptomyces RepID=Q7X2G0_9ACTO Length = 341 Score = 81.1 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 78/236 (33%), Gaps = 47/236 (19%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCR 65 +A R ++S L + LA GVS RT+RRD RL L + SG R Sbjct: 2 IANRTLELLSLLQTQREWTGDGLAERLGVSPRTVRRDIN-RLRELGYPVTATKGPSGSYR 60 Query: 66 LRTA-GSEMQMVPDVLIFA---------------------HRSGLAGLFPG-LDRRLVNA 102 L +V D A + + L P L RL Sbjct: 61 LSRGARLPPLIVDDEQALAIALSLQTAPASVTGMGDATKRALNSIQELLPPHLAHRLATF 120 Query: 103 LLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERL-------AP 155 + E+ + A P PS +L A R V + + P Sbjct: 121 SVEQIENAWEL--APPQVDPSLLA---QLSSAAQQRDLVRFSYRSIHHDSMQDGEVLAEP 175 Query: 156 CRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETF----RRNDSLCRLVED 205 RL++ WYLVA + + +D I + P F ++ + R V++ Sbjct: 176 HRLVVWSGRWYLVAYDQQRSSWHAYRVDRIKDLAPTAWRFGEREGPDEDITRFVQN 231 >UniRef50_UPI0001C37EC6 helix-turn-helix type 11 domain-containing protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37EC6 Length = 302 Score = 80.0 bits (196), Expect = 6e-14, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 19/198 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYCRLRTAGSE 72 RL I+S L+ + ++ +LA +F VS RT+ RD + + + G + Sbjct: 5 RLIGILSLLLQRDKITSAELAEKFEVSRRTILRDIETLNQSGIPVFAEQGQGGGISVMEG 64 Query: 73 MQMVPDVLIFAHRSGLAGLFPGLD--------RRLVNALLMCDES-----PCVIAPANPV 119 +M +L + LD RRL+ L D S +I + Sbjct: 65 YKMDRTLLSSEDMRAILSGLQSLDSVSGTNRYRRLMEKLSADDRSSADADNHIIIDLSSW 124 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVA--EHEGH 174 + A + QAI R + + P L+ +WY+ G Sbjct: 125 DKSAVADKIELIKQAIEKRHIIAFSYFSPSSETQRNIEPYHLVFQWSSWYVWGFCTDRGD 184 Query: 175 IAVFTLDEIHLIQPLQET 192 +F L + ++ E Sbjct: 185 YRMFKLTRMTELKMTDEK 202 >UniRef50_Q5WD79 Transcriptional regulator n=5 Tax=Bacillus RepID=Q5WD79_BACSK Length = 304 Score = 80.0 bits (196), Expect = 6e-14, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 20/207 (9%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM----YLDLEYQSG------ 62 RL II +L+ E LS +LA EF VS RT+ RD + + +G Sbjct: 4 ERLISIIFKLLNNEILSASRLADEFQVSSRTIYRDIEAICAAGIPVVSYQGTNGGFGIIK 63 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG--LDRRLVNALLMCDESPCVIAPANPVP 120 + + + +++ L+G+F +D + + I + Sbjct: 64 GYKFDKSLIGSYDLSNLITVLR--SLSGIFEDKTIDHTIERLKSLDPSGNNGILSVDLES 121 Query: 121 SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174 + A S L AI +R + + P + + WYL G+ Sbjct: 122 HRTEAHSLIGLRNAIQEKRIIRFDYVSSKNEWTSREIEPIHIQYKFRNWYLYGYCKERGN 181 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCR 201 F + + I ++TF +N + R Sbjct: 182 YREFRVSRMMNITLTEKTFAKNHDVKR 208 >UniRef50_D1B1H8 Putative uncharacterized protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1H8_SULD5 Length = 307 Score = 80.0 bits (196), Expect = 6e-14, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 13/187 (6%) Query: 28 LSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPD-------VL 80 +S++ L+ + VS +T++RD E L Q +L + +E + + + Sbjct: 30 MSIQDLSKQMDVSTKTIQRDLYEVLGEYGAVKQGRMWKLDSKKAEDNLNSNERIILGILD 89 Query: 81 IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRR 140 A +G + F G L+ + E P + S F L +AI + Sbjct: 90 EMAKNAGSS--FYGKAHSLLKQISQQLEHPIFANVESESLDESHIELFSLLEKAIKTKHT 147 Query: 141 VTLIAEGRRCERLAPCRLLIHQQTWYLVAE---HEGHIAVFTLDEIHLIQPLQETFRRND 197 V+ + + + P +L WYL+A + F L I+ + TF N Sbjct: 148 VSFTYKKHLFD-VQPLKLAFFDSFWYLLALDIQDDNKFKKFYLKSINDLTIQDNTFSINT 206 Query: 198 SLCRLVE 204 +L ++ Sbjct: 207 TLEERLK 213 >UniRef50_UPI0001C425E1 hypothetical protein BpOF4_16355 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425E1 Length = 325 Score = 79.6 bits (195), Expect = 7e-14, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 42/254 (16%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD-----------FRERLMYLDL--- 57 A RL I+ L E ++ ++LA + V+ RT+ RD F ER Y Sbjct: 3 ADRLLSILFSLQQNEKMTTKELATQLEVTERTIHRDMDALSAAGIPVFAERGKYGGWKVL 62 Query: 58 -EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLA-----------GLFPGLDRRLVNALLM 105 EY+ + L+ + + G+ +P ++ + Sbjct: 63 EEYKKAFSGLKESELNTLFLSPSSHLLTDLGIEQEWSEARKKLLATYPAKKKQELTRSWD 122 Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIH 161 + + L QA+ V + E R ++P L+ Sbjct: 123 RIHIDSSTWRK--RNAMTKEDGLKELQQAVWNDVNVEIDYEKADGKRSTRVISPLGLVAK 180 Query: 162 QQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRR--NDSLCRLVEDP--VFIQALPHFR- 216 TWY+VA G + F + IH + L E+F R + +L + FI+ LP ++ Sbjct: 181 GSTWYVVAVSNGQLRNFKVSRIHSVTLLSESFDRPVDFNLAEYWHESKQKFIENLPKYKV 240 Query: 217 --FIQHSL---LTF 225 FI S+ LTF Sbjct: 241 DIFISPSIVKRLTF 254 >UniRef50_A6P211 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A6P211_9BACE Length = 302 Score = 79.6 bits (195), Expect = 9e-14, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 74/230 (32%), Gaps = 49/230 (21%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG--------- 62 RL I+S L+ E ++ +LA +F VS RT++RD + + G Sbjct: 4 ERLIGILSILLQCEKVTAPELAEQFEVSRRTIQRDIESLCRAGIPITTAQGAGGGISIME 63 Query: 63 YCRLRTAGSEMQMVPDVL-------------IFAHRS-----GLAGLFPGLDRRLVNALL 104 R+ + +L +A G GL PG L++ L Sbjct: 64 GYRVDRTVLTAPEMQAILAGLRSLDSVSGTRRYAQLMEKLSAGTGGLVPGCAHMLID--L 121 Query: 105 MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIH 161 + + G AI + +G + P L+ H Sbjct: 122 SSWYKTSL---PPKIELIQG---------AIEQHHTICFTYFSPKGESVRTIEPYYLVFH 169 Query: 162 QQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDS-LCRLVEDPVF 208 TWY+ +F L+ + + E+F + L L + VF Sbjct: 170 WSTWYVWGWCRMREDFRLFKLNRMTELT-TGESFAPRSAPLPNLEPEQVF 218 >UniRef50_C6D6M2 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6M2_PAESJ Length = 237 Score = 79.2 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 69/215 (32%), Gaps = 26/215 (12%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL---EYQSGYCRLR 67 A RL I+ L + +LA VS RT+ RD L + + G L Sbjct: 3 ADRLISILMLLQLEGKKTAAELAERLEVSERTIYRDMDALSLSGVPVYADSGAGGGFSLP 62 Query: 68 TAG---SEMQMVPDVLIF--------AHRSGLAGLFPGLDRRLVNALL-MCDESPCVIAP 115 + P++ + G+ +L+ AL E I Sbjct: 63 PNYKSPIDGLTTPEIQALFLYAAEGSTDQLGIVSALRSALLKLMQALPEQSREDAAWIRQ 122 Query: 116 ANPVPSPSGAL------SFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165 + S F + ++I V + R + + P L+ W Sbjct: 123 RIHIDPDSWQREEKALPHFAAVQESIMQHYAVEISYRSRDGAEKSLTVKPYGLVAKAGIW 182 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 +L+ E + + + L I ++ +E F R +S Sbjct: 183 FLIGEGDQGVQAYRLSRIQGLKITEEKFERPESFD 217 >UniRef50_A4J6Q1 Transcriptional regulator-like protein n=2 Tax=Peptococcaceae RepID=A4J6Q1_DESRM Length = 350 Score = 79.2 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 78/238 (32%), Gaps = 38/238 (15%) Query: 1 MTQAERRHDRLAVRLSLIISRLVA---GETLSVRKLAAEFGVSVRTLRRDFRERLMYL-- 55 MT+ ++ +RL++II + ++V +L +F V+ R + RD L Sbjct: 1 MTERAKKDATKGLRLNMIIDLINKRTPYGGVTVNELMDKFEVAERQVYRDLNTIANDLRV 60 Query: 56 DLEYQSG--------YCRLRTAGSEMQMVPD----VLIFAHRSG--LAGLFPGLDRRLVN 101 L Q L L + G L G L LV+ Sbjct: 61 PLVKQERHIEGIKKTCYCLEVGYLPSLSPEKATVLFLSLLQQKGSALTGHLNELKDALVS 120 Query: 102 ALLMCDESP-----------CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----- 145 L +P + V F +L+QA+ RV + Sbjct: 121 TLFKYHYNPKELAVEKLQNRIHLVEETLVEPEQVGEMFSKLVQALKVCYRVKIKYFVTHS 180 Query: 146 EGRRCERLAPCRLLIHQQTWYLVA--EHEGHIAVFTLDEIHLIQP-LQETFRRNDSLC 200 + + P L+ +Q WYLV I VF +D+I + P ETF+ Sbjct: 181 QKETERVVEPYGLICKRQNWYLVGQCLERNAIRVFRVDQIRDVFPYTSETFQYPTDFD 238 >UniRef50_A7GBR0 Putative uncharacterized protein n=10 Tax=Bacteria RepID=A7GBR0_CLOBL Length = 310 Score = 78.8 bits (193), Expect = 1e-13, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 26/222 (11%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYCRLRTAGSE 72 RL II L+ E +S KLA F V+ RT+ RD L + + +G + E Sbjct: 5 RLISIIMVLLNNERISAIKLAEMFEVTPRTIYRDIDTISLAGIPIITHTGVNGGVSIMPE 64 Query: 73 MQMVPDVLIFAH----RSGLAGLFPGLDRR-------LVNALLMCDESPCVIAPANPVP- 120 ++ + GL+ + L + V +LL D+ + +N + Sbjct: 65 YKVDKKFFTASDISTLLMGLSSVSTTLSNKEVIGTLEKVKSLLPKDQFRDIELKSNQITI 124 Query: 121 -------SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVA 169 + S + ++ A+ + ++ G + + P +L++ + WYL Sbjct: 125 DLTTWMGNKSFQPNLEKVKSALNDSKYLSFEYYGGNRKKDKRCIEPYKLILKENNWYLQG 184 Query: 170 --EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209 VF L I ++ L+ F + + ++ +I Sbjct: 185 YCTLREDFRVFKLSRISNLEILESIFVPREFKSKPLDGSGWI 226 >UniRef50_C6PMV9 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PMV9_9CLOT Length = 256 Score = 77.7 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 28/207 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSG---------Y 63 RL I+S L E +++++LA F VS RT+ RD + + SG Sbjct: 5 RLLGILSVLANTERITIQELAERFEVSKRTIFRDLDTLNQSGVPIVAYSGIGGGVSLLEG 64 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL---------LMCDESPCVIA 114 +L+ + ++ F +GL + L+N + ++ ES VI Sbjct: 65 YKLKNNILSKGDIKNI--FTALNGLMSI--DESNDLINLMAKLIPEETSMVFSESDYVID 120 Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVA-- 169 ++ L +AI R+ + L RR + P +L+ Q WYL A Sbjct: 121 LSSWFQDSITQEKVSNLHKAIKNRKCIYLEYISKRSRRVRIIHPHKLVFKQAYWYLYAFC 180 Query: 170 EHEGHIAVFTLDEIHLIQPLQETFRRN 196 E +F ++ I + + +F Sbjct: 181 EDNQEFRLFKVNRIANYKIMDTSFSYK 207 >UniRef50_C9XKH2 DeoR-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=C9XKH2_CLODC Length = 303 Score = 77.3 bits (189), Expect = 4e-13, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 19/202 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTAGSE 72 RL+ II L+ + ++ ++LA F VS RT+ RD + + + G + E Sbjct: 5 RLTEIIVILLNKKLVTAKELADRFEVSTRTIYRDIETLSMSGVPVYMTKGKGGGISLIEE 64 Query: 73 MQMVPDVLIFAHRSGL--------AGLFPGLDRRL--VNALLMCDESPCVIAPANPVPSP 122 + +L + L A +P ++ + + ++ I Sbjct: 65 YSIDKAILSKKDKESLIVALKTLQATKYPEINSVVNKIGSIFGEQNFSNWIEIDFTEWGS 124 Query: 123 SGALS--FWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAE--HEGH 174 + F ++ +AI R + + P +L+ +TWYL + Sbjct: 125 NFNEDDKFTKIKEAILRRNTINFNYVNSLSSQTNRTVEPLKLMYKSKTWYLYGFCKLKDD 184 Query: 175 IAVFTLDEIHLIQPLQETFRRN 196 +F + I + E F R Sbjct: 185 FRIFRISRIRNLSIKDEVFSRK 206 >UniRef50_Q92EJ5 Lin0464 protein n=2 Tax=Firmicutes RepID=Q92EJ5_LISIN Length = 310 Score = 76.9 bits (188), Expect = 5e-13, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 26/210 (12%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYCRLRTAGSE 72 RL I+ L+ E +S ++LA F VS+RT+ RD L + + G + Sbjct: 5 RLMSIVLILLDKERISAQELADRFEVSLRTIYRDIDAIDLAGVPIRSTPGVGGGFEIMPD 64 Query: 73 MQMVPDVLIFAHRSGLAGLFPGLD-----RRLVNAL------LMCDESPCVIAPANPVP- 120 +M V A S + L L+NAL + D + + AN + Sbjct: 65 YKMDSKVFSTADLSAILMGLSSLSNMVRGDELINALAKIKSFIPADRAKEIELKANQIYI 124 Query: 121 -------SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA 169 + + + A+ + +T + + P +L++ WYL Sbjct: 125 DLSQWTGNNNIQPHVEIIKVALQENKLLTFEYIAHQGNKTVRIVEPYQLVMKSSHWYLYG 184 Query: 170 EHEGH--IAVFTLDEIHLIQPLQETFRRND 197 + +F L + +Q L++TF D Sbjct: 185 YCQNRNDFRLFRLSRMSGLQILEDTFTLRD 214 >UniRef50_C0CTB1 Putative uncharacterized protein n=4 Tax=Firmicutes RepID=C0CTB1_9CLOT Length = 312 Score = 76.9 bits (188), Expect = 5e-13, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 26/211 (12%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYCRLRTAGSE 72 RL II L+ E + ++LA F VS RT+ RD + + + G E Sbjct: 5 RLVSIIMMLLDKERIGAQELADRFEVSPRTIYRDIETINMAGIPVRSTPGVGGGFEIMQE 64 Query: 73 MQMVPDVLIFAHRSGLAGLFPGLD-----RRLVNAL------LMCDESPCVIAPANP-VP 120 ++ +V A S + L LVNAL + D + + AN Sbjct: 65 YKVDKNVFSAADLSAILMGLSSLSGMVRGNELVNALAKVKRFIPADRAKEIELKANQIYI 124 Query: 121 SPSGALS-------FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA 169 S + R+ A+ R ++ + + P ++++ WY Sbjct: 125 DLSPWMGNRNIQPYLERVKTALQESRLLSFEYADRFGNKTVRTVEPYQIVLKGSHWYFQG 184 Query: 170 EHEGHI--AVFTLDEIHLIQPLQETFRRNDS 198 +F L I +Q +ETF D Sbjct: 185 YCRKREDFRLFRLSRISNLQMTRETFSPRDY 215 >UniRef50_D2Q3M3 Helix-turn-helix type 11 domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q3M3_9ACTO Length = 323 Score = 76.5 bits (187), Expect = 7e-13, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 29/199 (14%) Query: 30 VRKLAAEFGVSVRTLRRDFRERLM------YLDLEYQSGYCRLRTAGSEMQMVPDVLIFA 83 R+LA E VS+RT+ RD E L Y D GY + +++ + + A Sbjct: 21 ARELAEELEVSLRTIYRDV-EALAAAGVPVYADQGRAGGYRLVDGYRTKLTGLTEQEAAA 79 Query: 84 HRS----------GLAGLFPGLDRRLVNALLMCD-------ESPCVIAPANPVPSPSGAL 126 GL ++ +L+ AL ++ + + Sbjct: 80 LFLVGMPGPAAALGLTAETSAVELKLLAALAPDQRDRAGRLKNRFHLDMPAWYREAEDSP 139 Query: 127 SFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLD 181 ++ +A+ RR+T++ L P L++ +WY+VA G + + + Sbjct: 140 YLAQVAEAVLQDRRITVLYRRWEEPREVERTLDPYGLVLKHGSWYVVAAASGGVRTYRVS 199 Query: 182 EIHLIQPLQETFRRNDSLC 200 I + F R Sbjct: 200 NILALTMTGTVFTRPADFD 218 >UniRef50_C1SIZ5 Predicted transcriptional regulator, COG2378 n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIZ5_9BACT Length = 302 Score = 76.5 bits (187), Expect = 7e-13, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 15/180 (8%) Query: 27 TLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRS 86 ++ R +A F VS RT +R E + +L ++ + ++ + +L A S Sbjct: 19 EINARMVAEYFEVSKRTAQRYLEE-ISFLPSIHRDEERYTYSLTEKVTLSDSLLKSAEMS 77 Query: 87 GLAGLF------------PGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQA 134 L + P LD ++ + S I + + A + +L + Sbjct: 78 FLNAVLGYAKTVMGEQNSPMLD-KISKKIQYAGNSTHQIISSPVIDYDIVAENHIKLEEY 136 Query: 135 ITGRRRVTLIAEGR-RCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETF 193 I + ++ E + + P ++++H WYL A H + F L+ I I+ E + Sbjct: 137 IENKLLISFYYEKSDKNYTVEPYKIILHNGFWYLAAGHNNTLKKFVLEYIQDIKSSGENY 196 >UniRef50_Q5WCJ1 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCJ1_BACSK Length = 321 Score = 76.1 bits (186), Expect = 8e-13, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 77/235 (32%), Gaps = 30/235 (12%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR-----------ERLMYLDLEYQ 60 A RL I+ L + +S + LA E GVS RT+ RD ER + Sbjct: 3 AERLLSIVLLLQNRKIISTKALAEELGVSERTVHRDMDALSSAGIPVYAERGKTGGWKLL 62 Query: 61 SGYCR-LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR---RLVNALLMCDESPCVIAPA 116 GY L E + G G +L+ +L A Sbjct: 63 DGYRTQLTGLTKEEVKTLFLSPPIDLLGDLGYTKNWQEAREKLLASLSSATSVDFADAQN 122 Query: 117 NPVPSPSGALS-------FWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTW 165 S F L Q + +R +++ E + P L+ TW Sbjct: 123 RIYIDASTWRGKKETVEAFSLLNQGLWEQRALSISYEKYGSTASEREVEPLGLVAKGSTW 182 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216 YL+A + + F I Q L + F R ++ R D FI+ LP + Sbjct: 183 YLIAAEQQELKTFRASRIRSAQLLPKRFERPENFDLARYWHDSKNAFIRTLPSYE 237 >UniRef50_B2JN46 Helix-turn-helix type 11 domain protein n=4 Tax=Proteobacteria RepID=B2JN46_BURP8 Length = 323 Score = 76.1 bits (186), Expect = 8e-13, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 76/231 (32%), Gaps = 31/231 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRT 68 RL ++ L ++ + LA EF VS+RT+ RD + Y D G+ L Sbjct: 5 RLVSMLLMLQVKGRVTAQALADEFDVSIRTVYRDIDQLSAAGVPVYADRGPGGGFALLDG 64 Query: 69 AGSEMQMVPDVLIF----------AHRSGLAGLFPGLDRRLVNALLM------CDESPCV 112 +++ + A GLA +LV AL S Sbjct: 65 YRAKLTGITRAEAETLSIAGLTGAASDLGLAEQLRAAQLKLVTALPDAAPDTSRIGSRVH 124 Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-------EGRRCERLAPCRLLIHQQTW 165 I P P+ L A+ ++RV++ + P L++ W Sbjct: 125 IDPVGWYQRPTPTPWLTMLAGAVWEQKRVSMQYRTWNGTDDKEGVRVRDPLGLVLKGGEW 184 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFR 216 YLV + + + I + ETF R D + A+ F Sbjct: 185 YLVTRVRTQLRTYRVSSIAQLTVHDETFERPDGFDLR---EEWTAAVASFE 232 >UniRef50_C7NAI6 Helix-turn-helix type 11 domain protein n=3 Tax=Leptotrichia RepID=C7NAI6_LEPBD Length = 299 Score = 76.1 bits (186), Expect = 8e-13, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 20/201 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGY----- 63 RL I+ L+ +T++ +KL+ F VS+RT+ RD E L + L ++G Sbjct: 5 RLFQIVLILLNKKTITAKKLSEHFNVSIRTIYRDI-EALSFAGIPIYSLRGKNGGIRLLE 63 Query: 64 -CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVN-ALLMCDESPCVIAPANPVPS 121 L + + ++L +A S A +P +D L L+ S I Sbjct: 64 SYILDKSLLSSKEQNEIL-YALESLKASNYPDVDEVLKKLNLIFNKSSDDWIEVDFSRYG 122 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE--HEGHI 175 + F + +AI + V + P ++ ++ WYL A + I Sbjct: 123 SNDNTLFNNIKKAILNSQAVKFTYFNTNGETSQRTVNPLKIWFKEKAWYLFAYCQKKNEI 182 Query: 176 AVFTLDEIHLIQPLQETFRRN 196 F ++ I + E F R Sbjct: 183 RQFKINRIKNLTLTNEYFERR 203 >UniRef50_C1SHC7 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHC7_9BACT Length = 306 Score = 76.1 bits (186), Expect = 8e-13, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 21/215 (9%) Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSE 72 +I L ++ +A E GVS+RT +R + + YL E Y E Sbjct: 10 LIKLLNENRYVTSTMVADELGVSLRTAQRYLSD-MSYLPGVCYSDEKHQWYLTEHYGLHE 68 Query: 73 MQMVPDVLIFAHRSGLAGL--------FPGLDRRLVNALLMCDESPCVI--APANPVPSP 122 + D A SGL + G+ +L ++ +I A+ V Sbjct: 69 SYLKQD--ELAVLSGLFDYAENILQDEYSGMLTKLRKKIISASNRQNIIQFMKADSVGFD 126 Query: 123 SGALSFWRLIQAITGRRRVTLIA-EGRRCERLAPCRLLIHQQTWYLVAE-HEGHIAVFTL 180 A +F L I ++ +T + + + P RL+ + WYL A + + F L Sbjct: 127 KVAENFTLLENYILKKQVITFDYLKNDKTYEVKPYRLIYNDGFWYLAALNKQDSLRKFGL 186 Query: 181 DEIHLIQPLQETFRRNDS-LCRLVEDPVFIQALPH 214 D + I+ ETF + + I PH Sbjct: 187 DLMENIKSSNETFEIATDVIDAEISQANNIFFDPH 221 >UniRef50_Q65LG5 Hypothetical DNA-binding protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65LG5_BACLD Length = 320 Score = 76.1 bits (186), Expect = 9e-13, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 31/245 (12%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR-----------ERLMYLDLEYQSG 62 RL I+ L A ++ ++LA VS RT+ RD ER + Sbjct: 5 RLISILLMLQAQGQMTAKELAERLEVSERTIYRDMEALSGAGIPVVAERGINGGWSLLDD 64 Query: 63 YCR----LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVIAPAN 117 Y L+ + VP GL + +L+ +L ++ + Sbjct: 65 YQTTLTGLKESEIRALFVPLSEQLLDDLGLTRISEEARNKLIASLPSEYRQNAKDVWNRI 124 Query: 118 PVPSPS------GALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167 + + S A SF L AI +++ ++ + +AP L+ WYL Sbjct: 125 YIDTCSWRHKKEKAESFEVLKDAIWKDQKLKIVYQRADGQTADRVVAPLGLVAKGANWYL 184 Query: 168 VA-EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFRFIQHSL 222 +A + G I + I ++ETF R ++ FI+ LP + + Sbjct: 185 IASKENGEIRNYRASRIKSAVFVRETFDRPENFDIAHVWRSSTKEFIERLPTYEVRVKAA 244 Query: 223 LTFVP 227 +P Sbjct: 245 QAILP 249 >UniRef50_C6PV47 Helix-turn-helix type 11 domain protein n=2 Tax=Bacteria RepID=C6PV47_9CLOT Length = 313 Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 30/212 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCRLRT 68 RL II L+ + +S +LA F V++RT+ RD + + G + Sbjct: 5 RLVSIIMILLERKKISAPELAKMFEVNLRTIYRDIDTINQAGIPIITYRGANGGIGIMEK 64 Query: 69 AGSEMQ--MVPDVLIFAHRSGLAGLFPGLD-RRLVNAL--------------LMCDESPC 111 E + + D+ GL + + + L+N + + + Sbjct: 65 YKIEKKLFTLSDITEL--LIGLKSIHSTISNQELLNTMAKLKGLVPKDELQQVEKKTNRI 122 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167 I + LS ++ AI ++ + ++ P RL++ +WY+ Sbjct: 123 KIDHTPWFGNKRIQLSLKKIKTAINKNSFISFKYFDRLGQKSERKIEPYRLVLKNSSWYI 182 Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRND 197 +F + I ++ L+ETF + Sbjct: 183 QGYCTLREDFRIFEVSNISSLKVLEETFIPRE 214 >UniRef50_Q8F269 Transcription regulator n=2 Tax=Leptospira interrogans RepID=Q8F269_LEPIN Length = 317 Score = 75.0 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 28/232 (12%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD-----------FRERLMYLDLEYQ 60 A RL I+ +L A +S R LA + VS RT+ RD F ER E Sbjct: 3 ADRLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVFAERGSKGGWELS 62 Query: 61 SGYCRLRTAGSEMQMVPDVL----IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116 GY T + ++ +L A G + + +L + + Sbjct: 63 EGYRTNLTGMKKEEIFSMILTSSTRIASDLGRKKDLDSALMKFMASLPPAYQKEAEMVRQ 122 Query: 117 NPVPSPSGALS------FWRLIQ-AITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWY 166 +G F LIQ A+ +++ L + + ++P L+ + WY Sbjct: 123 RIYVDGAGWSCSEEELPFLSLIQEAVWQGKKIVLRYKTDEESKKRNVSPLGLVAKGKIWY 182 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRND-SLCRLVEDPV--FIQALPHF 215 LVA++E F + I + R L + +D F+ +P + Sbjct: 183 LVAKYEKEFRTFRVSRIVEAKLGDSFERPKRFDLEKYWKDSTQNFLSKIPSY 234 >UniRef50_Q9S3S5 Putative uncharacterized protein n=1 Tax=Enterococcus faecium RepID=Q9S3S5_ENTFC Length = 302 Score = 75.0 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 22/220 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYC----RLRT 68 R+ I+ L+ E ++ ++LA F VSVRT+ RD + + Q G L Sbjct: 5 RMFGILCVLLEREKITAQELAEYFEVSVRTIHRDLLDLSSAGFPVTTQQGIGGGISLLPN 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDR----RLVNALLMCDESPCVIAPANPVPSPSG 124 ++ I SG+ G F +D + + A L + ++ + + + Sbjct: 65 FKYSKSVLNKEDIDLIVSGIQG-FASIDESSKIKTLLAKLRLGQEDKLLLENDIIIDFTS 123 Query: 125 ALS-------FWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVA--EHE 172 + AI RR + L G + P +L+ ++ WYL A Sbjct: 124 WNHKNTTIEKIKIIRSAIASRRLLELEYYSSNGYSKRTVEPYKLIFKEEYWYLFAYCTQR 183 Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 VF L+ I + + T+ V F + Sbjct: 184 QDFRVFKLNRISKLLLCERTYTERTDYEIPVLQSAFSNGV 223 >UniRef50_A3CLM4 Putative uncharacterized protein n=2 Tax=Streptococcus RepID=A3CLM4_STRSV Length = 299 Score = 75.0 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 17/196 (8%) Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE----YQSGYCRLRTAGSE 72 IIS LV + ++L+ F VS RT+ RD + L + L G + ++ Sbjct: 9 IISHLVNQRKTTAKELSELFKVSTRTIMRDIDDLSLAGIPLYVMKGKNGGIFLMEDFQTD 68 Query: 73 MQMVPDVLIFAHRSGLAGLFPGL-DRRLVNALL----MCDESPCVIAPANPVPSPSGALS 127 + + SGL + L D NA+L S I + + Sbjct: 69 KPPLTQSERLSIESGLKSRYQVLEDTSTFNAILKLNATNTYSDFEIDLSLSQGNLEIRTL 128 Query: 128 FWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHIA--VFTLD 181 ++L++AI GR ++ + P R++ ++WY+ A VF + Sbjct: 129 IFKLLEAIRGRVKIKFSYINSQGLVSQKNCEPYRIVYKDRSWYMDAYDTDKARFSVFKVA 188 Query: 182 EIHLIQPLQETFRRND 197 I + +TF + Sbjct: 189 RISELTLS-DTFSKRH 203 >UniRef50_D0MGR2 Helix-turn-helix type 11 domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGR2_RHOM4 Length = 336 Score = 75.0 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 74/232 (31%), Gaps = 34/232 (14%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY 59 M AER +R RL +I L L+ R+LA FGVS RT+ RD R + L Y Sbjct: 1 MKLAERTRNR-TERLFALILLLQTRPGLTARQLAEHFGVSRRTIFRDLRALSEANVPLTY 59 Query: 60 QS--GYCRLRTAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGL 95 GY L M G + + P Sbjct: 60 AEGGGYEILEGYQLPPLMFTAREAATLLIGTEFMKRQPDASLRADADAVALKIRSVLPRS 119 Query: 96 DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRC 150 R ++ L S A ++ L +AI ++ V L Sbjct: 120 IREYIDRLQERIVIDPY-WLQTMQGSDEEAGYWYELSEAIARQQSVHLEYYVPSRDELTQ 178 Query: 151 ERLAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200 R+ P L+ + W L+A I F LD I + L+E F Sbjct: 179 RRVDPLGLVYYTDHWNLIAYDHLRKDIRNFRLDRIQRLTVLRERFTPPRDFD 230 >UniRef50_C0EAB2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAB2_9CLOT Length = 298 Score = 74.2 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 75/217 (34%), Gaps = 22/217 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGY----- 63 RL +I L+ ++ ++LA F VS RT+ RD E L + + + G Sbjct: 5 RLFEMIYLLLDRRRMTAKELAERFEVSERTVYRDV-EVLSAAGIPVYATKGRGGGIQLLD 63 Query: 64 -CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAPANPV- 119 L + + ++L A +P +D L +++L + + Sbjct: 64 DFVLDKSVLSEREKNEILFSLQGMSAAH-YPEIDEVLNRLSSLFQQSNTDWIDVDFTQWG 122 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--HEG 173 F RL AI R+RV + + + P +L + WYL A Sbjct: 123 SDEEEKKKFARLRDAILSRKRVRMCYCSAYGIQSSRTVEPVKLRFKGKAWYLQAYCCKRQ 182 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210 +F L I + E F E P F Q Sbjct: 183 EYRMFKLFRISNLSVTDELFEPKQPPSWEEEKPSFSQ 219 >UniRef50_B8DCU5 HTH domain family n=6 Tax=Listeria monocytogenes RepID=B8DCU5_LISMH Length = 318 Score = 74.2 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 72/207 (34%), Gaps = 22/207 (10%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE----YQSGYCRLR 67 RL II L+ E +S ++A F VS RT+ RD + + + + G + Sbjct: 16 ERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAGTKGGIGIMP 75 Query: 68 TAGS--EMQMVPDVLI-FAHRSGLAGLFPGLDRR----LVNALLMCDESPCVIAPANPVP 120 T ++ V D+ A G+ L + + + +L P + + Sbjct: 76 TYKVDKKLLTVDDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLDFS 135 Query: 121 SPSGALSF----WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE-- 170 + S L AI + V L + + P LL ++WYL Sbjct: 136 NLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQTIRKTEPYHLLFRNRSWYLQGYSL 195 Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRND 197 F + I ++ L+ETF Sbjct: 196 ERSDFRTFKMSRIVELKTLEETFEARP 222 >UniRef50_C5REL4 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5REL4_CLOCL Length = 304 Score = 73.8 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 20/204 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR- 67 RL I+ ++ E ++ ++LA + VSVRT++RD +Y + GY L Sbjct: 5 RLFSILLMIINKEKITAKELAEHYQVSVRTIQRDIDTLSMAGIPIYAESGKNGGYQLLEG 64 Query: 68 -TAGSEMQMVPDVLIF-AHRSGLAGLFPGLDRRLVN------ALLMCDESPCVIAPANPV 119 + I A L + P LD + ++ LL ++ ++ + Sbjct: 65 YKLDMNFLNTKEAKIIRAILDNLEKIAPYLDMKTISNKFSSTHLLDNQDNKLIMKLNPLI 124 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEHEGHI 175 + + +A ++ + + P L++ WY+ E Sbjct: 125 NEENLKKHLELIAKARDNYHKICMKYVDMNFQVTDRIICPYTLVMMGTVWYVYGYCELRE 184 Query: 176 --AVFTLDEIHLIQPLQETFRRND 197 +F L I L E F + Sbjct: 185 DFRIFKLSRIIECIILNEEFVVKE 208 >UniRef50_A0AFG8 Complete genome n=16 Tax=Listeria RepID=A0AFG8_LISW6 Length = 307 Score = 73.8 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 22/211 (10%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE----YQSGYCRLR 67 RL II L+ E +S ++A F VS RT+ RD + + + + G + Sbjct: 4 ERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLMMANIPIYTIAGTKGGIGIMP 63 Query: 68 TAGS--EMQMVPDVLI-FAHRSGLAGLFPGLDRR----LVNALLMCDESPCVIAPANPVP 120 T ++ D+ A G+ L + + + +L P + + Sbjct: 64 TYKVDKKLLTAEDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLDFS 123 Query: 121 SPSGALSF----WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE-- 170 + S L AI V L + R P LL ++WYL Sbjct: 124 NLSMKKELNAKVESLYLAIKKHHLVELSYIDRTGKQTIRRTEPYHLLFRNRSWYLQGYNL 183 Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201 F + I ++ L+ETF + + Sbjct: 184 ERNDFRTFKMSRIVELKTLEETFEARPFVVK 214 >UniRef50_C9MZ16 HTH domain protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MZ16_9FUSO Length = 315 Score = 73.8 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 27/221 (12%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY------ 54 M + + ++R+ II RL E L+ LA EF V ++T++RD Y Sbjct: 1 MAGKNQNSEEKSIRILKIIKRLYQKEILNGTDLANEFNVDIKTVQRDIETLRAYFLEENG 60 Query: 55 LDLEY--QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES--- 109 +++Y L + ++L + + F + + + L+ S Sbjct: 61 AEIKYSKSKKGYYLEENSEKSFTNEEILAISKIILESRAFNKNETQTLINKLINHSSGND 120 Query: 110 -----PCVIAPANPVPSPSGALSF----WRLIQAITGRRRVTLIA----EGRRCERLAPC 156 + + + + W L Q I + + + + + + P Sbjct: 121 RETIKGLINSEKSNYIPLQHGQNLLTVIWNLAQHIKNQELININYTTKDKQGKNYNIKPL 180 Query: 157 RLLIHQQTWYLVAEHEGH---IAVFTLDEIHLIQPLQETFR 194 ++ + +YL+A E A+F +D I I+ + F+ Sbjct: 181 SVMFSEYYFYLIAYIENKEEYPAIFRIDRITEIENTGKKFK 221 >UniRef50_UPI0001788164 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788164 Length = 313 Score = 73.4 bits (179), Expect = 6e-12, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 37/225 (16%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRL 66 + RL ++ + A ++ +VR+LA EFG+SVRT+ RD E L L ++ + G RL Sbjct: 4 SQRLIQLMMMINAKKSFTVRELADEFGLSVRTISRDLDE-LSGLGVPIYSVQGRGGGYRL 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126 + +M+P + F +A F + L + + + Sbjct: 63 ----LQERMLPPI-SFTESEAIAVFFACQSLSYFSTLPFGEGAATALHKFYHYLPADIKE 117 Query: 127 SFWR---------------------LIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQ 162 R L+QA+ R+ VT+ G + P L Sbjct: 118 QIERLKDRVMIHSPFRPMSADILQTLMQAVMVRQAVTISYRSSAGSSQRHIQPIGLYASS 177 Query: 163 QTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 WY A I F +D + P + R D + ++D Sbjct: 178 GYWYCPAYCFTQEDIRQFRVDRMTAASPNESLSIREDIASQTLQD 222 >UniRef50_A7VYA2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYA2_9CLOT Length = 304 Score = 73.4 bits (179), Expect = 6e-12, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 72/205 (35%), Gaps = 26/205 (12%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL------MYLDLEYQSGYCRLR 67 RL I+ L+ GET++ LA VS RT+ RD E L +Y+ G L Sbjct: 5 RLFEILYLLMEGETVTASALARRLEVSPRTIYRDV-EALSGAGIPIYMTKGRGGGIRLLP 63 Query: 68 TAGSEMQMVP-----DVLIFAHRSGLAGLFPGLDRRL----VNALLMCDESPCVIAPANP 118 E + ++L + G GL + + AL + + + Sbjct: 64 DFVLEKSLFSHQEQDEILYALQSLAVTG---GLQDKTVLSRMRALFQRTPADWIDVDFSG 120 Query: 119 VPS-PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--H 171 P F R+ QA+ R ++ R+ P +L WY+ Sbjct: 121 WGHGPQEREKFLRIKQAVLESRVLSFTYYSTCGQTTNRRIEPMKLRFRGSAWYVHGFCLE 180 Query: 172 EGHIAVFTLDEIHLIQPLQETFRRN 196 + + VF + + I +E F R Sbjct: 181 KQELRVFKVSRMEGISVTEEAFDRR 205 >UniRef50_C6CRF1 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRF1_PAESJ Length = 302 Score = 73.0 bits (178), Expect = 8e-12, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 34/212 (16%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGS- 71 RL II +L+ + L LA EF VS RT+ RD D+ +G+ + G+ Sbjct: 4 ERLISIIYKLLNNDVLPANALAEEFQVSQRTIYRDI-------DVICAAGFPVVSYQGNK 56 Query: 72 -------EMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCVI 113 +M +L + L + GL + + +P + Sbjct: 57 GGFGMLEGFKMDKSLLGSYDVNALVTVLKGLSTVFEDERAQGTIERLQTVGTEQRTPSLA 116 Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA 169 S + L AIT R+ + R L P RL +WY+ Sbjct: 117 VDFETRRS--DPETLPLLRAAITERKVIRFDYINAKNERTTRELEPVRLHFKYGSWYIYG 174 Query: 170 EHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199 F L + + F + + Sbjct: 175 YCLTRCDYREFRLSRMVEALQTERCFEPHKEV 206 >UniRef50_C3L2F0 Transcription regulator n=4 Tax=Clostridium RepID=C3L2F0_CLOB6 Length = 315 Score = 73.0 bits (178), Expect = 8e-12, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 80/249 (32%), Gaps = 47/249 (18%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYCRLRTAG 70 A RL I+ L + L+ +L+ + VSVRT+ RD + + + G Sbjct: 3 ADRLISILMLLQIYKKLTASELSKKLEVSVRTIYRDIDTLSGIGVPIVTEKGI------N 56 Query: 71 SEMQMVPDVLIFAHRSGLA-----GLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 ++++ D +G+ LF +++ L + + I SP+ Sbjct: 57 GGIKLLGDYKT--SLTGINKNELLSLFIPTGDKILEDLGVENLKDSTILKILGNSSPNDL 114 Query: 126 LSFWR--------------------------LIQAITGRRRVTLIA---EGRRCERLAPC 156 F L AI + + ++ + L P Sbjct: 115 KEFENIQNYIYIDMYTWNKPNNIVNTNILSILQNAIWNSKSLKILYRKIYETKEVELNPL 174 Query: 157 RLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCR----LVEDPVFIQAL 212 L+ + TWYLVA + I + + I + +TF R F + Sbjct: 175 GLVCKRGTWYLVAVNNRIIKTYKVTSIESALLMTDTFIRPYDFNLKSYWRNSTSNFKSLI 234 Query: 213 PHFRFIQHS 221 P + F Sbjct: 235 PKYTFTFKV 243 >UniRef50_B2T6R2 Helix-turn-helix type 11 domain protein n=4 Tax=Proteobacteria RepID=B2T6R2_BURPP Length = 321 Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 25/214 (11%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQ---SGYCRL- 66 A RL I+ L A ++ + LA E VS+RT+ RD + + + G RL Sbjct: 3 ASRLLSILMTLQARGRVTAQFLADECAVSLRTIYRDIDALSAAGVPVHSERGAEGGYRLL 62 Query: 67 ---RTAGSEMQMVPDVLIFA-------HRSGLAGLFPGLDRRLVNALL-------MCDES 109 RT + + +F GL + G +L+ AL S Sbjct: 63 DGYRTRLNGLSSQEAESLFLAGLPGPMQALGLGAVMAGAQTKLLAALPVELRSTAERMRS 122 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQTWY 166 + + +A+ + + + + + R+ P +++ WY Sbjct: 123 RFHLDAPAWFSDADEPAHLPLIARAVWEQHPLEIRYQSWKAEKFRRIEPLGIVLKSGAWY 182 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 +V + ++ + I I L ETF R + Sbjct: 183 VVGRVGQDLRIYRISRILEISLLDETFERPCAFD 216 >UniRef50_B1C6Z1 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6Z1_9FIRM Length = 301 Score = 72.3 bits (176), Expect = 1e-11, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 21/202 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGY--------- 63 RL I+ L+ E ++ ++LA E VS RT+ RD + + + Q GY Sbjct: 5 RLIQIVFLLLRHENITAKQLAKELCVSARTIYRDINILSIAGIPITSQKGYGGGLSLLQG 64 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--VNALLMCD-ESPCVIAPANPVP 120 L + + +++ + +P D+ L + L + +S + + Sbjct: 65 FSLDKSYFTQEEQKNIIQALQILK-SSNYPNADKSLNKIAGLFSHNLQSEWLEIDFSYWG 123 Query: 121 SPSGAL-SFWRLIQAITGRRRVTLIAEGRRCE----RLAPCRLLIHQQTWYLVAE--HEG 173 SP + L +AI + +T + P +L+ WYLVA H+ Sbjct: 124 SPEKERNNITVLERAIINKYVITFTYFNAELTITNQIVEPLKLVFKSHAWYLVAYSKHKN 183 Query: 174 HIAVFTLDEIHLIQPLQETFRR 195 I F + I +Q + F R Sbjct: 184 DIRTFKMSRIRELQITDQLFDR 205 >UniRef50_A7ZBV9 HTH domain family n=1 Tax=Campylobacter concisus 13826 RepID=A7ZBV9_CAMC1 Length = 305 Score = 72.3 bits (176), Expect = 1e-11, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 9/184 (4%) Query: 29 SVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPD---VLIFAHR 85 ++++L A GV+ +T++RD + L + Y L + + D VL Sbjct: 29 TIKELTAMLGVTSKTIQRDLYDTLREYGAVKKGHYWSLNDEDASDGLDGDDRVVLNILDN 88 Query: 86 SG--LAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTL 143 + F L+ + P + N S ++F L AI + +T Sbjct: 89 VAKNMGSNFYSKAHVLLEQISQQLNHPILTNINNEKLSEDDLVNFQTLEDAIREKAEITC 148 Query: 144 IAEGRRCERLAPCRLLIHQQTWYLVAEHE---GHIAVFTLDEIHLIQPLQETFRRNDSLC 200 G + P +L + + WYL+ F L I I+ E F + L Sbjct: 149 TYNGFEFL-VKPLKLALFEGFWYLLLLDSKKGNKFKKFHLKSIKDIKHSGEKFELSSELD 207 Query: 201 RLVE 204 V+ Sbjct: 208 ERVK 211 >UniRef50_C4FVK8 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271 RepID=C4FVK8_9FIRM Length = 296 Score = 71.9 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 69/203 (33%), Gaps = 21/203 (10%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSG----- 62 A RL I+ L+A R LA F V+ RT+ RD + + ++ Q G Sbjct: 3 AGRLLGILHYLLAHGRTPARVLAQRFEVTERTILRDMDDLSEFGVPVYAIQGQGGGWEID 62 Query: 63 -YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP--V 119 L + Q +L S GL +L ++ + Sbjct: 63 RRYVLPAGLLQEQEQSQILAALEASQADD---GLLDKLKAHFKGSQKADHWLLVDQTTWH 119 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVA--EHEG 173 SP + F L QAI R VT ++ P RL++ WYL A Sbjct: 120 QSPHLSHDFDLLKQAILERHLVTFRYCSNQGIWSQRQVEPARLVLKHYRWYLYAWCRERQ 179 Query: 174 HIAVFTLDEIHLIQPLQETFRRN 196 F L + +Q L + F + Sbjct: 180 DFRYFKLSRMQDLQVLTQGFESD 202 >UniRef50_C6D7L1 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7L1_PAESJ Length = 320 Score = 71.5 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 31/223 (13%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-------LMYLDLEYQSGYCR 65 RL I L+ + + ++LA + VS+RT+ RD + Y +E GY Sbjct: 4 ERLMAITILLLNRKRVQAQELAEQLEVSLRTIYRDLDSLGQAGIPIVSYTGME--GGYEI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFP--GLDRRLVNALLM-------------CDESP 110 + + + Q++ + A + L GL DR ++ LL E Sbjct: 62 MDSFRLDRQLLSFDELTALFTALRGLESTNAYDRSNMDLLLSKVGAMVAQAEQGRTGEGD 121 Query: 111 CVIAPANPVPSP-SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165 + P + + +L QA+ R+ + G + + P L++ W Sbjct: 122 RIQVDFTPWKNSEEDQARYDQLRQAVNDRKLIRFHYTSRTGGEQEREIEPMALVLKNYAW 181 Query: 166 YLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206 YL +F L I + TF R + D Sbjct: 182 YLHGYCRLREDYRIFKLTRIRQLSIQAGTFTRRTESLEQLNDR 224 >UniRef50_A9B2R1 Helix-turn-helix type 11 domain protein n=2 Tax=Bacteria RepID=A9B2R1_HERA2 Length = 322 Score = 71.5 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 20/220 (9%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL---EYQSGYCRLRT 68 RL II L+ E +S + A F VS RT+ RD L + + +G + Sbjct: 23 ERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDALSLANIPIYAVHGVNGGYGIMQ 82 Query: 69 ---AGSEMQMVPDVLI-FAHRSGLAGLF-PGLDRRLVNALL----MCDESPCVIAPANPV 119 + D+ SGL +F P R + + + + Sbjct: 83 EYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIKKIEAMVGQLALNRAIYLSFYAW 142 Query: 120 PSPSGALSFWRLIQ-AITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE--HE 172 S L + Q +I +R V + + P L + TWYL Sbjct: 143 EGRSELLETLKTCQESILKKRLVLFDYTDKDGTITQRMIEPYELHFSESTWYLKGFCLDR 202 Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 F L I + F D+ + ++ L Sbjct: 203 QAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLPQL 242 >UniRef50_B2V022 DeoR-family transcriptional regulator n=5 Tax=Clostridium RepID=B2V022_CLOBA Length = 298 Score = 71.5 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 20/199 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGY--------- 63 RL I++ LV+ ++++ +LA F VSVRT+ RD + + G Sbjct: 5 RLFSIVNILVSKKSVTATELAERFDVSVRTIYRDIEILSTNGIPICSAQGKGGGLSILDN 64 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAPANPVP- 120 + VL+ G +D + +L + + + Sbjct: 65 YSIDKTILSDSEQKQVLMALQSVNATGQI-NVDDSFLKLRSLFRKNVIDWIEIDFSGWEQ 123 Query: 121 SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174 S +F + +I + V + R + P +L+ WY+ Sbjct: 124 SKEDKENFKIIKDSIINSKAVYISYFSNKGERSERIVEPYKLIFKGYNWYIYGYCRKRKD 183 Query: 175 IAVFTLDEIHLIQPLQETF 193 + F L I I+ L++TF Sbjct: 184 MRFFKLTRIEKIEILKDTF 202 >UniRef50_A6VRC7 Helix-turn-helix type 11 domain protein n=3 Tax=Proteobacteria RepID=A6VRC7_MARMS Length = 328 Score = 71.5 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 87/245 (35%), Gaps = 32/245 (13%) Query: 13 VRLSLIISRLVA---GETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYC 64 +R S I+ L+ E ++ +LA S+RT+ RD E L + + + G Sbjct: 1 MRASRILKMLMMLQTHEKVTAAELADACETSIRTVYRDI-EALSAIGVPVYSEQGVQGGY 59 Query: 65 RLRTA---GSEMQMVPDVLIF--------AHRSGLAGLFPGLDRRLVNALLMCD------ 107 RL + A + G+ L +L AL Sbjct: 60 RLLQGYRTRLNGLSAKEAETLFLAGLSGPAQKMGIDTLLADAQLKLKAALPENIRPEIDR 119 Query: 108 -ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQ 163 +S ++ N L+ A+ +R V + +G +L P +++ Sbjct: 120 LQSRFLLDAPNWFSDDEKVTYLPDLMTAVLEQRCVVMQYQSWKGEINRQLQPLGIVLKGG 179 Query: 164 TWYLVAEHEGHIAVFTLDEIHLIQPLQETFRR--NDSLCRLVEDPVFIQALPHFRFIQHS 221 WYL+A+ E + + + I + L E F R + +L +D + + F I Sbjct: 180 QWYLLAQVEQDVRTYRVSRIGSLTLLGEVFERPKDFNLTAFWQDSLRRMEVVQFPIIAEV 239 Query: 222 LLTFV 226 LT + Sbjct: 240 RLTSL 244 >UniRef50_C2U625 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillaceae RepID=C2U625_BACCE Length = 305 Score = 71.5 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 70/206 (33%), Gaps = 22/206 (10%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR----ERLMYLDLEYQSGYCRLRT 68 RL II +L+ E LS LA EF VS RT+ RD + + +G + Sbjct: 4 ERLLSIIYKLLNHEVLSASMLAEEFQVSQRTIYRDIDVICAAGFPVVSYQGSNGGYGMMD 63 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA-LLMCDESPCVIAPANPVPSPS---- 123 +M +L + L + L + E I P + V S S Sbjct: 64 ---GYKMDKSLLGSYDVNSLVTVLRSLSTVFEDKRAQGTIERLQTIGPDHHVTSLSVDLE 120 Query: 124 ----GALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH- 174 + +L +IT + V R + P +L + WY+ Sbjct: 121 THRTEPDTLRQLRTSITQQNVVRFDYINAKNERTTRDMEPLKLHFKYRNWYIYGFCRTRR 180 Query: 175 -IAVFTLDEIHLIQPLQETFRRNDSL 199 F L + + QETF+ + + Sbjct: 181 DYREFRLSRLMNLYVTQETFQPHHEV 206 >UniRef50_D1PN27 Transcriptional regulator, DeoR family n=3 Tax=Clostridiales RepID=D1PN27_9FIRM Length = 303 Score = 71.5 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 22/205 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL--MYLDLEYQSGYCRLRTAGS 71 RL I+S L+ E ++ +LA +F VS RT++RD E L + + G + Sbjct: 5 RLIGILSILLQREQVTAPELAEQFEVSRRTIQRDI-EALGRAGIPITTAQGAGGGISIIE 63 Query: 72 EMQMVPDVLIF----AHRSGLAGLFPGLDRRLVNALLM--CDESPCVIAPANP---VPSP 122 ++ VL A +GL L R L+ + +I+ S Sbjct: 64 GYRVDRTVLTAPEMQAILAGLRSLDSVSGTRRYAQLMEKLSAGNSTLISGGTHMLIDLSS 123 Query: 123 SGALSFWRLIQAIT----GRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175 S I+AI V +G + L+ H TWYL + Sbjct: 124 WYKSSLAPKIEAIQNAMEQHHLVHFTYDAPKGTSVRSVESYYLVFHWSTWYLWGWCQTRQ 183 Query: 176 --AVFTLDEIHLIQPLQETFRRNDS 198 +F L+ + + + F + Sbjct: 184 DFRLFKLNRMTNLS-TGDPFTPRPA 207 >UniRef50_UPI0001789548 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789548 Length = 317 Score = 71.1 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 90/233 (38%), Gaps = 29/233 (12%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66 A RL I+ L G + R LA + VS RT+ RD +Y + Q G+ Sbjct: 3 ADRLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSQGGWVLE 62 Query: 67 RTAGSE-MQMVPDVLIFAHRS---------GLAGLFPGLDRRLVNALLMCDESPCVIAPA 116 + + M PD LI S G+ F ++L+ + I Sbjct: 63 ESYRTNLTGMTPDELISLLVSSHSPLIGDLGIRKQFDAAYQKLLASSPRSIRQDAEIIRE 122 Query: 117 NPVPSPSGALSFWR-------LIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWY 166 +G S+ L +A+ R + + E R R+ P L+ + TWY Sbjct: 123 KIHIDGAGWHSYRESHPYLTVLQEALWLDRIMDIQYMKGEERVERRIHPLGLVAKRSTWY 182 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRND--SLCRLVEDP--VFIQALPHF 215 +VAE +G + + + I ++TF+R +L E+ F+Q LP + Sbjct: 183 VVAESQGELRTYRVSRIVDAVMSEDTFQRPAGFNLAEYWEESLARFMQNLPQY 235 >UniRef50_B3QT91 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QT91_CHLT3 Length = 327 Score = 71.1 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 67/222 (30%), Gaps = 41/222 (18%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL------DLEYQSGYCRL 66 R+ I +L A + + R LA EF VS ++++RD + L D + Y Sbjct: 11 YRMKRIDEKLRAKKYPNCRTLADEFEVSEKSVQRDLEHMRVLLGAPIAYDRSKRGFYYTE 70 Query: 67 RTAGSE--MQMVPDVLIFAHR-----------------SGLAGLF---PGLDRRLVNALL 104 + F S + +F PG + Sbjct: 71 PNYFLPSVYLKHGEAKAFGVLQRILKQYEETPYYKELESAMHRVFENLPGKSDPFSEEEI 130 Query: 105 MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLL 159 E P P P F ++ +A R + + + P L Sbjct: 131 YSFEQP------PPPSRPLDREHFQQIDRAANRREVIDITYYAASRNETSRRGVHPYHLH 184 Query: 160 IHQQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 Q TWYL+A E + F L+ I I+ F + Sbjct: 185 FAQGTWYLIAHCELRRELRFFALNRISEIRETSRPFAIPEDF 226 >UniRef50_A9KRE5 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRE5_CLOPH Length = 299 Score = 70.3 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 17/197 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGY--------- 63 RL I L+ ++++ ++LA F VSVRT+ RD L + + G Sbjct: 5 RLFEITYLLLNKKSMTAKELAEHFEVSVRTIYRDIDALSLAGIPVYTTKGKGGGISLMES 64 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV-PSP 122 L A + ++L R ++++ E+ + + + Sbjct: 65 YVLNKAVLSEKEQENILASLQGLHAVNRSEDATLRKLSSIFGKKEASWIEVDFSRWGSNS 124 Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRRCER----LAPCRLLIHQQTWYLVAEHEGH--IA 176 F + QAI ++ + +I + P +L+ Q+WYL A + Sbjct: 125 EEKEKFELIKQAILEKQELEMIYHNSSGHESKRIVFPLKLIFKAQSWYLYAYCKEKKDYR 184 Query: 177 VFTLDEIHLIQPLQETF 193 +F L + ++ + F Sbjct: 185 IFKLRRVKNLKMNSKKF 201 >UniRef50_A8LFK5 Helix-turn-helix type 11 domain protein n=5 Tax=Actinomycetales RepID=A8LFK5_FRASN Length = 337 Score = 70.3 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 80/238 (33%), Gaps = 45/238 (18%) Query: 22 LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-----GYCRLRT-AGSEMQM 75 L +G T +V +LA GV RT+RR + + L+ LD+ +S G RL M Sbjct: 15 LQSGGTRTVAELADRLGVDGRTVRR-YVQHLIDLDVPVESVRGRYGGYRLAAGYRLPPLM 73 Query: 76 VPDVLIFAHRSG-----------------------LAGLFPGLDRRLVNALLMCDESPCV 112 + D A G + + P R ++A+L + Sbjct: 74 LNDDEALAVLLGLIASRRAGLLTTTGTASETAAAKIRRVLPERLARGLDAVLD-----SL 128 Query: 113 IAPANPVP-SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167 A P + + + A+ R +++ R L P L+ H WY+ Sbjct: 129 AFTAPPGEATAAETAVVLPIADAVRHHRPISIRYTAADGRRSERTLHPYGLVAHNGRWYV 188 Query: 168 VAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 G F LD I + L +F D L + L + + +L Sbjct: 189 TGADPGIGEDRTFRLDRIEHARTLPGSFEPPDGLD---PAQRVLSGLANAPYRHEVIL 243 >UniRef50_A6F2P0 Transcriptional regulator, DeoR family protein n=2 Tax=Alteromonadales RepID=A6F2P0_9ALTE Length = 318 Score = 70.3 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 36/220 (16%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR--ERLMYLDLEYQSGYCRLRTAGS 71 R+ ++ L + +LA GV RT+RR E L + + G + Sbjct: 7 RVLTVLELLQTHGQIGGAELAERLGVDRRTIRRYITVLEELGI-PVMTEQGRYGGYRLVA 65 Query: 72 EMQMVPDVLI------------FAHRSGLAGLFP-------GLDRRLVNALLM-----CD 107 ++ P + A + GLA P L+R + L D Sbjct: 66 GFKLPPMMFTDEETLAVSLGLLAARQLGLADAAPAIASVQAKLERVMPADLKKRVRGVSD 125 Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQ 163 + ++ P + +A+ R V G + P L+ Q Sbjct: 126 TTRVILPRGEPSLDDRALQNLTVATEAM---RSVGFTYHSPEHGGIDRSVDPYGLVFRQG 182 Query: 164 TWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201 WYL + F LD I + L TF+R Sbjct: 183 RWYLTGFCHLRQAMRSFRLDRISHVHLLTATFQRPPDFDA 222 >UniRef50_C3XIJ3 Aspartate ammonia-lyase n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XIJ3_9HELI Length = 304 Score = 70.0 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 24/220 (10%) Query: 14 RLSLIISRLVAGET---LSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ--------SG 62 R+S I + L E + ++LA EF VS+RTLRRD + EY G Sbjct: 3 RISKIYTALHNPENNGVICAKELAKEFSVSLRTLRRDVE----NMGAEYSYKKDKIYFHG 58 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD--RRLVNALLMCDESPCVIAPANPVP 120 + + + FA+ G A L L + + +N Sbjct: 59 HYTTKENDELSMAFLLLKSFAYSMGGATKTQMLSLLENLESKSQPKQSTDIFFTRSNLEE 118 Query: 121 SPSGALSFWRLIQAITGRRRVTLIA-------EGRRCERLAPCRLLIHQQTWYLVAEHEG 173 S L +AI + + + P ++L WYL+ Sbjct: 119 ITLDTESILLLQKAIKEHMIIQFKFLQELNNTKTHTQREVLPLKILNFNGEWYLLGLESS 178 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 + F L+ I I+ +++ ++ + +++ + +P Sbjct: 179 VMKKFYLNNIIDIKEVRQGESVSEEVLGRLDNALNAWFVP 218 >UniRef50_A4XCA7 Helix-turn-helix, type 11 domain protein n=7 Tax=Actinomycetales RepID=A4XCA7_SALTO Length = 332 Score = 70.0 bits (170), Expect = 6e-11, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 29/214 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRT 68 RL ++ L A ++ +LA E GVS RT+ RD Y + GY + Sbjct: 15 RLFSMVLLLQARGAMTAAELAGEVGVSERTVYRDIIALAAAGVPVYAEQGRHGGYRLVDG 74 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLF-PGLDRRLVNALLMCDESPCVIAPANPVP------- 120 + + + A L GL+ P D L + L PA Sbjct: 75 YRTRLTGLSRAEAEALF--LLGLYGPARDMGLGDVLATAQLKVSAALPAELRDAAAQAAQ 132 Query: 121 -----------SPSGALSFWRLIQAITGRRRVTLIAEGRRC--ERLA-PCRLLIHQQTWY 166 + L++A+ V L + P +++ WY Sbjct: 133 RFHLDVPGWFHDSDPPPALSVLVRAVWQDLTVILRYHRHDEVTRTVQQPYGVVLKAGIWY 192 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 LVA + V+ +D + ++ + F R +S Sbjct: 193 LVARVGADLRVYRVDRVVGVEVTDQRFVREESFD 226 >UniRef50_Q9RY95 Repressor protein, putative n=1 Tax=Deinococcus radiodurans RepID=Q9RY95_DEIRA Length = 316 Score = 69.6 bits (169), Expect = 8e-11, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 89/252 (35%), Gaps = 39/252 (15%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL--DLEYQ---SGYCRL 66 ++R+ ++ L A E ++ +LA VS RT++R + RL L +E + G RL Sbjct: 6 SLRVLTVLELLQAREEVTGAELARRLEVSPRTVQR-YVARLQDLGIPVEGRRGVGGAYRL 64 Query: 67 RTA---------GSEMQMVPDVLIFAHRSGLAGLFP-------GLDRRLVNALLMCDES- 109 + G E + L GL+ L P L R L L + Sbjct: 65 KPGFRLPPLMFTGEEALALALGLRALQHLGLSDLLPAAEVAGAKLSRTLPPELRDTVAAL 124 Query: 110 -PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164 +P + + A L QA +R L + R++ Sbjct: 125 EQVAQLSVSPWVTSTDARLLTTLFQAAREGQRAELTYRSGAAQHTEREVEVYRVVHVDGR 184 Query: 165 WYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA-LPHFRFIQHS 221 WY V G + F LD I + +ETF L F+Q LP + Sbjct: 185 WYAVGHCRLRGALRCFRLDRIETCRLREETFTPPADFDAL----AFLQQELPAAH--PYE 238 Query: 222 LLTFVPADSPPE 233 + ++ A PPE Sbjct: 239 ISVWLAA--PPE 248 >UniRef50_C0ZCT1 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCT1_BREBN Length = 309 Score = 69.6 bits (169), Expect = 8e-11, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 26/225 (11%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEY----QSGYCRLR 67 RL I+ L+ +S R+L+ F VS+RT+ RD + + GY + Sbjct: 4 ERLLAIVIMLLNKRRVSARELSDHFEVSLRTVYRDLETINAAGIPIVAYPGVSGGYEIME 63 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM-------------CDESPCVIA 114 + Q + + A + L G+ D + + LL + V+ Sbjct: 64 NFTIDRQYLSLDELVAVIAALKGVHSSTDDKQIGQLLEKIKALLTTAPSSLQGSAHPVVY 123 Query: 115 PANPV-PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA 169 NP +P+ A +L +AI R RV +I + P L+I WY+ Sbjct: 124 DFNPWGSTPAIAEKVNKLREAIEKRLRVRIIYTKIQGDATERTIEPVTLIIKGYVWYIYG 183 Query: 170 E--HEGHIAVFTLDEIHLIQPLQETFRRNDS-LCRLVEDPVFIQA 211 +F L I + L E F + + +L + A Sbjct: 184 YCLQRQEDRLFRLSRIADMSVLTEEFSPRPNQIDKLEWLEEWDTA 228 >UniRef50_D0RTY4 DeoR-family transcriptional regulator n=3 Tax=Streptococcus RepID=D0RTY4_9STRE Length = 308 Score = 69.2 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 74/198 (37%), Gaps = 22/198 (11%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL--EYQSGY------ 63 RL I+ L+ + ++ +++A F +S RT+ RD L + + E Sbjct: 4 ERLIYILLALLNKKQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFYIPD 63 Query: 64 -CRLRTAGSEMQMVPDVLIFAHRSGL---AGLFPGLDRRLVNALLMCDESPCVIAPANPV 119 ++ ++ + ++ + G F ++ +L + + + +P + Sbjct: 64 DYKMDSSFFTEEEKQFIINMSQNVGKIVGRPSFDSIEHKLTSQEVTDNVNPFYFDLTSWS 123 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175 + + + QAI ++V+ + R + P RL+ WY++ + Sbjct: 124 LNTNY---LLEIEQAIQTGKKVSFSYFSKKQERSLRTILPYRLIFKLNAWYVIGYCFEKL 180 Query: 176 --AVFTLDEIHLIQPLQE 191 +F L I + + E Sbjct: 181 DFRIFKLSRIRDLLIVDE 198 >UniRef50_C9NKS1 Helix-turn-helix type 11 domain protein n=5 Tax=Streptomyces RepID=C9NKS1_9ACTO Length = 348 Score = 69.2 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 69/220 (31%), Gaps = 37/220 (16%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66 A RL ++ L + +++ +LA E VS RT+ RD + +Y D ++G RL Sbjct: 30 AARLIKMVLLLQSRPSMTAAELARELEVSARTVTRDAQALSEAGVPVYAD-RGRAGGYRL 88 Query: 67 -----------------------RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL 103 + + D A A L P + Sbjct: 89 VGGYRTGLTGLARHEAEALFLSGLPSALREMGLDDAASVARLKVSAALLPS-----LRDA 143 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLI 160 + P+ + +A+ R V G LAP L++ Sbjct: 144 PRTASQRFHLDAPGWYHDPATPELLPAVAEAVWDDRLVRARYRRTSGEVERELAPYGLVL 203 Query: 161 HQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 WYL A + V+ +D + + F R++ Sbjct: 204 KAGVWYLCARAGKDVRVYRIDRFTAVAVSETRFVRDEEFD 243 >UniRef50_B1BVT1 Transcriptional regulator, DeoR family n=3 Tax=Bacteria RepID=B1BVT1_CLOPE Length = 299 Score = 69.2 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 20/205 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL II L+ + +LA +F VSVRT+ RD +Y G Sbjct: 5 RLFRIIYYLIEKGKSTAPELAKKFEVSVRTIYRDIDVISSVGIPIYATQGKNGGIVIDED 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP-------S 121 + M+ SGL G+F + N LL + + N + Sbjct: 65 FTLDKSMLSQKEKEQILSGLQGVF-ATNGNNTNELLTKLGALFHMQTKNWIEVDFSDWVQ 123 Query: 122 PSGALS-FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174 A + F + AI R ++ + P +L+ + WY+ Sbjct: 124 CQPAQNIFNDIKNAILDRHIISFEYFNNLGNSIFRHIQPLKLIFKSKAWYVYGFCMLRND 183 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSL 199 F L I ++ ++ F +++ Sbjct: 184 YRFFKLTRIKHLKITEKQFIPPETI 208 >UniRef50_C1IA92 Transcription regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IA92_9CLOT Length = 301 Score = 69.2 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 18/200 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL II L+ + ++ ++LA F VS RT+ RD + +Y+ G L Sbjct: 8 RLFEIIYILLDKKNVTAKELAEHFEVSQRTIYRDIEDLSQSGVPIYMTKGKGGGISLLSD 67 Query: 69 AGSEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAPANPVPS 121 ++ + + GL F G+ +L + L +E+ + +N + Sbjct: 68 FILNKAILSQEEKKEILAAMQGLNAVNKSEFNGVLSKLSSFLGGDNENWIEVDFSNWDKN 127 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEHEGHI-- 175 + F + +I + ++ + P +L+ Q WYL A Sbjct: 128 NTLGEKFTTIKNSIINKNLISFEYFNSNGKLLERIVEPLKLVFKGQGWYLYAYCREREDN 187 Query: 176 AVFTLDEIHLIQPLQETFRR 195 F L + I + E F R Sbjct: 188 RFFKLTRMSNINIILENFNR 207 >UniRef50_B8FUA6 Helix-turn-helix type 11 domain protein n=3 Tax=Clostridiales RepID=B8FUA6_DESHD Length = 302 Score = 69.2 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 19/217 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTAGSE 72 RL II+ L+ E ++ +LA F VS RT++RD + + + GY + Sbjct: 5 RLIGIITILLQKERATIPQLAERFEVSCRTIQRDIDAIGQAGIPIVSRQGYGGGLSIADG 64 Query: 73 MQMVPDVLI----FAHRSGLAGLFPGLDRRLVNALLMC---------DESPCVIAPANPV 119 ++ VL A +G+ + L+ E ++ Sbjct: 65 YKLDKTVLTKKELQAILTGIRSIDSISKTTYGQTLIEKFANGKAAVLAEQDMILIDLASW 124 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174 S + +L QAI R +V + +G + P +L WY+ + Sbjct: 125 YQDSLSDKIEQLRQAIFNREKVFFVYYSDKGESERLIEPYLILFKWAAWYVYGYCLTKNE 184 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 +F L+ + ++ T+ + +E + Q Sbjct: 185 YRLFKLNRLWKLKNTNLTYIPRNIPEGKLEFERYFQT 221 >UniRef50_C5EHW4 Helix-turn-helix type 11 domain-containing protein n=5 Tax=Clostridiales RepID=C5EHW4_9FIRM Length = 309 Score = 68.8 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 23/205 (11%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-----------RLMYLDLEYQSG 62 RL I+S L+ E ++ LA +F VS RT+ RD + R + + G Sbjct: 5 RLIGILSVLLQKEKVTAPYLADKFEVSRRTINRDIEDICKAGIPIVTTRGVNGGISIMEG 64 Query: 63 YCRLRT--AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN--- 117 Y +T EMQ + L G + L +L I Sbjct: 65 YRMDKTLLTSREMQSILAGLRSLDSVSFTGQYRQLMDKLSVGNHDLIHVDSHIMINLSSW 124 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174 + + + ++ +AI R G + P L+ +WY+ Sbjct: 125 YKETLTPKIHLFQ--EAIEECRLTRFSYFSPSGETSRCIEPYTLVFQWSSWYVWGYCCLR 182 Query: 175 I--AVFTLDEIHLIQPLQETFRRND 197 +F L+ + ++ QE F + + Sbjct: 183 EDYRMFKLNRMADLELCQEHFTKRN 207 >UniRef50_B0N590 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N590_9FIRM Length = 304 Score = 68.8 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 63/204 (30%), Gaps = 28/204 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL------MYLDLEYQSGYCRLR 67 RL I L+ + + ++LA F VS RT+ RD +RL +Y + + G Sbjct: 5 RLFETIYYLIEHKQTTAKELAEHFEVSTRTIYRDL-DRLIVAGFPIYANQGAKGGIYIDS 63 Query: 68 TAGSEMQMVPDVLIFAHRSGL-----------AGLFPGLDRRLVNALLMCDESPCVIAPA 116 + D L AGL + L E Sbjct: 64 EFVLDKMTFSDDEQNQILMALQCIERLQDRDEAGLIDKMAALFNKNKLDWIEVDFTTWHH 123 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWYLVAE-- 170 N + F + +AI ++ + + + P +L TWYL Sbjct: 124 NNSQN----EKFETIKKAIFEQKEIKFKYINSYGEKSQRCVFPNKLFFKANTWYLQGYCL 179 Query: 171 HEGHIAVFTLDEIHLIQPLQETFR 194 + VF L I + F+ Sbjct: 180 QKNSYRVFRLTRIIELLTTSNYFQ 203 >UniRef50_Q1JX03 Helix-turn-helix, type 11 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JX03_DESAC Length = 319 Score = 68.4 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 30/203 (14%) Query: 24 AGETLSVRKLAAEFGVSVRTLRRDFRERLMYL---DLEY---QSGYCRLR--------TA 69 G + KLA +F +S RT +RD L LEY + GY Sbjct: 17 QGNYPNAPKLARQFEISERTAKRDIDA-LTNQIGAPLEYNATRRGYRYSDASYSLTWTRF 75 Query: 70 GSEMQMVPDVLIFAHRSG----LAGLFPGLDRRLVNAL----LMCDESPCVIAPANPVPS 121 + M +L SG L+G L +++ L + + + Sbjct: 76 SHQEIMAMLILRRMLDSGGASPLSGELNALCEKMLTNLEQCGIDREHLDHCFSANWSHYI 135 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVA--EHEGH 174 P F +L +A+ RR+V + + P L + +WYL++ E + Sbjct: 136 PVDETIFQQLGEAVLTRRKVYFSYQNPTRPQASSRMVHPYHLQHYSGSWYLISWCEEQQD 195 Query: 175 IAVFTLDEIHLIQPLQETFRRND 197 F L I + F D Sbjct: 196 WRTFQLSRISQMHLTDTPFDYRD 218 >UniRef50_D2Q2S8 Helix-turn-helix type 11 domain protein n=2 Tax=Actinomycetales RepID=D2Q2S8_9ACTO Length = 320 Score = 68.4 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 74/223 (33%), Gaps = 42/223 (18%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY---LDLE-YQSGYCRL 66 + R+ +++ L G S +L++ GVS RTLRRD Y +D + + G+ RL Sbjct: 1 MTERMLALLATLQTGRAFSGAELSSRLGVSARTLRRDIDRLRGYGYPVDTQPGRGGFYRL 60 Query: 67 RTAG-SEMQMVPDVLIFAHRSG-------------------------LAGLFPGLDRRLV 100 ++ D A G + L PG R Sbjct: 61 TAGRALPPLVLDDDEAVATLLGLATLAATGEAGEGRLDEAATRAYGKIDQLLPGRLRPRA 120 Query: 101 NALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPC 156 A+ E+ +APA + L AI RR + R+ P Sbjct: 121 AAIRSTLEAAHQLAPAPSPQLLAD------LADAIRARRTAVFEYQSPTGRPSSRRVEPH 174 Query: 157 RLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRND 197 RL+ WY VA VF D I +Q + F Sbjct: 175 RLVHLNLRWYFVAWDVEKQDWRVFRCDRIEQLQIMTSQFEPRP 217 >UniRef50_B5HKG2 Truncated DeoR-family transcriptional regulator n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HKG2_STRPR Length = 273 Score = 68.4 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 67/217 (30%), Gaps = 37/217 (17%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRER--LMYLDLEYQSGYCRL 66 A RL ++ L + +++ +LA E VS RT+ RD E +Y D ++G RL Sbjct: 3 AARLIKMVLLLQSRPSMTGAELARELEVSERTVTRDALALSEAGVPVYAD-RGRAGGYRL 61 Query: 67 -----------------------RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL 103 + D A A L P + Sbjct: 62 IGGYRTRLTGLGRDEAEALFLSGLPGALRDMGLEDAASAARLKVSAALLPS-----LRNA 116 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLI 160 + P L +A+ RRV L P L++ Sbjct: 117 PESAARRFHLDAPGWYQEPKTPDLLPVLAEAVWDDRRVQAAYRRGDTEVERLLEPYGLVL 176 Query: 161 HQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRND 197 WYL A +G + V+ +D + E F R+ Sbjct: 177 KAGVWYLCARADGTLRVYRIDRFSSAEADGERFERDG 213 >UniRef50_A0QS56 DeoR-family protein transcriptional regulator n=7 Tax=Actinomycetales RepID=A0QS56_MYCS2 Length = 320 Score = 68.4 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 81/229 (35%), Gaps = 37/229 (16%) Query: 1 MTQAERRHDRLAVRLSLIISR-LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-- 57 M + R+ L L+ SR + GE +LA GV+ R++RRD ERL L Sbjct: 1 MARTVDTTGRVVQLLGLLQSRRVWTGE-----ELAERLGVTGRSVRRDI-ERLRELGYPV 54 Query: 58 ---EYQSGYCRLRTAGS--EMQMVPD-------VLIFAHRSGLAGL-------FPGLDRR 98 + Q G +L + + + PD L A +AG+ LD+ Sbjct: 55 HASKGQGGGYQLGAGMALPPLLLDPDEAVAMAVCLRLAAGGSVAGVGESALRALSKLDQV 114 Query: 99 L---VNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCE 151 + + + + V N + L +A R V+ + Sbjct: 115 MPARLRSQVAAIHDATVTLGPNATDTAVAPDVLMTLARACRDREHVSTGYTDLRGNQTQR 174 Query: 152 RLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDS 198 RL P +L+ + WYL+A LD + ++ TF + Sbjct: 175 RLEPYQLVTTGRRWYLMAYDRDREDWRSLRLDRMSDVRATGTTFTARPA 223 >UniRef50_A9KM28 Helix-turn-helix type 11 domain protein n=2 Tax=Clostridium RepID=A9KM28_CLOPH Length = 302 Score = 68.0 bits (165), Expect = 2e-10, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 76/204 (37%), Gaps = 21/204 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTAGSE 72 RL II+ L + ++ LA +F VS RT+ RD + + + G + Sbjct: 5 RLIGIITVLQNNKKVTAPYLAKKFEVSRRTINRDIEDICKAGIPIVTTQGNDGGISIMEG 64 Query: 73 MQMVPDVLI----FAHRSGLAGLFPGLDRRLVNALLMCDESP--CVIAPANPVPSPSGAL 126 ++ + A GL F + + L+ SP + S + Sbjct: 65 FKLDTTIFTTEELEAILVGLKS-FDSVSAHSASHKLIHKISPNRPTLMSLADSISIDLSS 123 Query: 127 SFW--------RLIQAITGRRRVTLIAEGRR---CERLAPCRLLIHQQTWYLVAE--HEG 173 + +L +AI +R V ++ +++ P +++ +WY+ + Sbjct: 124 HYKDSLAPKIAQLREAIQQKRVVMFHYYYKKGEDDKKIEPYQIVFQWSSWYVFGFCLKKR 183 Query: 174 HIAVFTLDEIHLIQPLQETFRRND 197 ++ L+ + +Q +E F + + Sbjct: 184 EFRLYKLNRLWDLQTTEEEFIQRE 207 >UniRef50_A8SDS7 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDS7_9FIRM Length = 314 Score = 68.0 bits (165), Expect = 2e-10, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 71/227 (31%), Gaps = 45/227 (19%) Query: 14 RLSLII---SRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQ--------S 61 RL I+ LV G L+ ++ A FGVS +T++RD R + D E + Sbjct: 5 RLDRILYIQQVLVQGGVLNKQQTADRFGVSEKTIQRDLDTLRNHFADSEPRREILYNSAK 64 Query: 62 GYCRLRTAGSEMQMVPDVLIFAHR------SGLAGLFPGLDRRLVNALLM----CDESPC 111 G L S ++L +FP LD +LV Sbjct: 65 GGYLLDDTLSRFLTSSEILAVCKILLESRSMVKEEMFPILD-KLVRVCTPLDRLNQVKDL 123 Query: 112 VIAPANPVPSPSGALSF----WRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQ 162 + P F W + A+ + + R + P +L + Sbjct: 124 ISNERFHYVEPQHGRKFIESLWEIGTAVENHNVMEITYCRTHDGETRVRTIEPVGILFSE 183 Query: 163 QTWYLVAEHEG-------------HIAVFTLDEIHLIQPLQETFRRN 196 +YL A EG ++ +D I + L F + Sbjct: 184 YYFYLAAFIEGIDKDKHFQNPQDNSPTIYRIDRIQNYKTLDRHFAQR 230 >UniRef50_A3CLQ0 Transcriptional regulator, putative n=3 Tax=Streptococcus RepID=A3CLQ0_STRSV Length = 299 Score = 67.6 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 18/211 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE----YQSGYCRLRT 68 RL I+ L+ + +LA+ F VS+RT+ RD + L+ + + G ++ Sbjct: 5 RLFKILYLLLEQGRTTAPELASLFEVSIRTIYRDVDKLSLVGIPIYCNPGKGGGIFLMKD 64 Query: 69 AGSEMQMVPDVLI---FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 + + + A GL L G ++ L + Sbjct: 65 FVLDKALFSESERDELLAALQGLQILTDGEQVETLSKLQSLFQVQATSWLEVDFTDWRKK 124 Query: 126 LS----FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA--EHEGHI 175 F + QAI RR ++ R ++ +L+ Q WY+ Sbjct: 125 ADQKELFDTIKQAILQRRVLSFSYLNGRGEREQRKIEALKLVFKSQNWYVAGFCRLRQAP 184 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206 F L + Q L+E F++ + + Sbjct: 185 RFFKLSRMRDCQMLEERFKQRVLDEKFSPEE 215 >UniRef50_D2QLY3 Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLY3_9SPHI Length = 315 Score = 67.6 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 28/213 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-YCRLRTAGS 71 RL+ I+ L + ++LA FG+S+RT+ RD R + + ++G L Sbjct: 6 RLTAILIHLQTKRVIRAQELADRFGISLRTVYRDVRSLEEAGVPIGAEAGVGYFLTDYNL 65 Query: 72 EMQMVPDVLIFAHRSGLAGLFPGLDRRLVN--------------ALLMCDESPCVIAP-- 115 M + A G L + V + + A Sbjct: 66 PPVMFTNAEASALLLG-GKLIEKWTDQSVRTEFESALYKIKSVLKRPDQEHLDSLEAHIN 124 Query: 116 --ANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYLV 168 P+ G S ++ AI + + L R+ P L ++ W+L+ Sbjct: 125 VAKPLYPTTEGEGSLNKIQHAIAQQHVLDLQYHSNYNNAETQRRVEPVGLYHYRMNWHLI 184 Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 A F +D I + E F R + L Sbjct: 185 AFCQIRQDYRDFRVDRIRQLTDTAERFSRREHL 217 >UniRef50_B9M6Q6 Helix-turn-helix type 11 domain protein n=5 Tax=Geobacter RepID=B9M6Q6_GEOSF Length = 336 Score = 67.6 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 47/236 (19%) Query: 3 QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSG 62 + +++ + A RL II + A +++ +LA E GV+ RT+ RD ++G Sbjct: 5 KPAKKYSQ-AGRLHDIIRLIEARHGITIEELAEEGGVNRRTIHRDLNA-------IQEAG 56 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLA-GLFPGLDRRLVNALLM-------CDESPCVIA 114 Y + + + + F + L + + + L ++ + Sbjct: 57 YPLVSDWVNGSKTYRFLTRFKDVPPINFTLQELMTLSFLRSQLDILKGTSFHEDMDAIFH 116 Query: 115 PANPVPSPSGALSFWR-------LIQAITGRRRV---------TLIAEGRR--------- 149 N V P A R L+Q V L+ + R Sbjct: 117 KVNSVLPPRYAAHMDRIARVSLPLLQGARDYSGVAEQLKTIRDALLYQYRLTITYGPPTK 176 Query: 150 ----CERLAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199 ++ P L+ ++ YL+ I F + I +Q +E F + Sbjct: 177 KSAEEYQVDPYTLIYNKGGLYLLGYAHNRRAIRTFAAERIKKVQVTKERFEMPEEF 232 >UniRef50_UPI000050FDF4 DeoR family transcriptional regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FDF4 Length = 332 Score = 67.3 bits (163), Expect = 4e-10, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 73/225 (32%), Gaps = 48/225 (21%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF----------------------RER 51 RL ++ L AG T + +L A FGV+ R++RRD R Sbjct: 6 RLLSLLGMLAAGRTYTAGELGAHFGVTPRSVRRDIASLRELGYVIESLPGATGGYRAHSR 65 Query: 52 LMYLDLEYQSG-----YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC 106 + L+ Q+G L DV + L + P + + + + Sbjct: 66 TVLPPLQLQTGEALATAVGLSLLNGAGLSTTDVESATAK--LRTMLPPVMHKTIGDI--- 120 Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-----------ERLAP 155 + V+ P + ++ AI R +T E RR R+ P Sbjct: 121 STAVSVLPGHEPGVDMTAVMTT---TSAIASRNVLTFAHEKRRPTRSETRSETTQRRVEP 177 Query: 156 CRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDS 198 R+++ WYL VF LD + I F D Sbjct: 178 VRMVVLGGHWYLYGWDLTRSDWRVFRLDRMSEIHETTFAFAPRDH 222 >UniRef50_B8FW42 Helix-turn-helix type 11 domain protein n=3 Tax=Clostridiales RepID=B8FW42_DESHD Length = 298 Score = 67.3 bits (163), Expect = 4e-10, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 24/202 (11%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY--LDLEYQSGY-------- 63 RL II L+ T++ +LA F VS RT+ RD E L + + G Sbjct: 5 RLFEIIYILLENRTITAAELAERFEVSARTIYRDV-EILAQGGMPIYMSKGKGGGISLLP 63 Query: 64 -CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 L A + ++L L ++ L + S Sbjct: 64 DFILNKAVLTEEEKSEILSSLQAFNAVNL--SKSETALSKLTSMLGAKNTDWIEVDFSSW 121 Query: 123 SGALS----FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA--EHE 172 + F + AI ++ +T + + + P +L+ WYL Sbjct: 122 GHFENDRAYFENIKTAIIEKKIITFMYASGKAEKLLREVLPLKLVFKGAAWYLYGYCTLR 181 Query: 173 GHIAVFTLDEIHLIQPLQETFR 194 F L I + F Sbjct: 182 RDYRFFKLRRITELAVTDTGFE 203 >UniRef50_A6DE69 Transcriptional regulator, putative n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DE69_9PROT Length = 305 Score = 66.9 bits (162), Expect = 5e-10, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 31/210 (14%) Query: 30 VRKLAAEFGVSVRTLRR---DFRERLMYLDLEYQSGYCR------LRTAGSEMQMVPDVL 80 ++ A + ++VRT +R D E + G L + + D+ Sbjct: 22 LKDFANRYEINVRTAQRYKEDVEEIFDIKLKMLKKGCYIAPDFKDLNKVLIDKGSIEDLD 81 Query: 81 IFAHRSGLAGL----FPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAIT 136 A+ + F G+D +++N L E I + P F ++ +AI Sbjct: 82 KLAYLLMIIDKNLIKFLGVDEKIINRYL--KEENFFIVKSLPFEELRSLEIFNKIKKAIK 139 Query: 137 GRRRVTLIAE---GRRCERLAPCRLLIHQQTWYLVAEHEGHI----AVFTLDEIHLIQPL 189 R+ + + + + P +++ + WYL I + I I+ Sbjct: 140 YRQYLKITYNALKEEIFDDIKPIKIVFAEGNWYLAVISNDKINNGFKFLRISYIKTIERK 199 Query: 190 QETFRRNDSLCRLVEDPVFIQALPHFRFIQ 219 ++ F+R+ +++ F+ I Sbjct: 200 KKEFKRDKEAEEFLKN---------FQSIW 220 >UniRef50_B7HZL2 HTH domain family n=31 Tax=Bacillus RepID=B7HZL2_BACC7 Length = 313 Score = 66.9 bits (162), Expect = 5e-10, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 32/218 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGY-------CR 65 RL I+ L +T++ + LA +F S+RT+ RD + + G+ Sbjct: 6 RLLAILIELQRKQTVTAQSLAEKFETSIRTIYRDMDALNESGVPIYSMPGHGYSLMDGYF 65 Query: 66 LRTAGSE--------------MQMVPDVLIFAHRSGLAGL---FPGLDRRLVNALLMCDE 108 L + RS L P ++ L Sbjct: 66 LPPIQLTPEEAVTLLLGGDYIEKTFTSSFSVHARSAKEKLEIVLPADQQKKAQELRETFR 125 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-----ERLAPCRLLIHQQ 163 + L ++I + ++ R + P L+ Sbjct: 126 FLSPMFSHQQSEQEKLENQLLLLQESIQKEQAISFSYRKPRETTKIKRTVHPYGLVNISG 185 Query: 164 TWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 WY+VA I F LD + +Q QE F + Sbjct: 186 IWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDF 223 >UniRef50_B4UYC1 Helix-turn-helix type 11 domain containing protein n=1 Tax=Streptomyces sp. Mg1 RepID=B4UYC1_9ACTO Length = 335 Score = 66.5 bits (161), Expect = 6e-10, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 42/210 (20%) Query: 22 LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRT-AGSEMQM 75 L +G +V +LAA V RT+RR + + L+ LD+ + G RL M Sbjct: 8 LQSGGLRTVAELAARLEVDERTVRR-YADHLLDLDVPVESVRGRHGGYRLAAGYRMPPLM 66 Query: 76 VPDVLIFAHRSG-----------------------LAGLFPGLDRRLVNALLMCDESPCV 112 + D A G + + P R ++A+L + Sbjct: 67 LSDDEALAVLLGLVAGQRAGLMSAAGTASETAAAKIRRVLPERLGRRLDAVLD-----SL 121 Query: 113 IAPANPVPSPSGALS-FWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167 P + + A+ R V++ L P L+ H WY+ Sbjct: 122 AFTTPPRTPAVPETAVLLAIADAVRHHRPVSIRYTAADGRHSERTLHPYGLVAHSGRWYV 181 Query: 168 VAEHE--GHIAVFTLDEIHLIQPLQETFRR 195 G F LD I + L TF Sbjct: 182 SGGDPAIGEERTFRLDRIADARTLPGTFDP 211 >UniRef50_C6D1B9 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1B9_PAESJ Length = 306 Score = 66.5 bits (161), Expect = 7e-10, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 27/210 (12%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM----YLDLEYQSGYCRLRT 68 RL II L+ E +S +L+ ++GVS RT+ RD + + +G + Sbjct: 4 ERLISIIYLLLNNEVVSASELSCKYGVSQRTIYRDIEAICAAGIPVVSYQGVNGGYGIMK 63 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLD------------RRLVNALLMCDESPCVIAPA 116 E +M +L + + L RL ++P + Sbjct: 64 ---EYKMDKSLLSSDDIASIITLLKSTTTLFEDERVQETIHRLKTVQADNGKAPSLTMDL 120 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA--E 170 S L AI GRR V + R+ + P LL+ WYL Sbjct: 121 GSWRS--YTAHLRTLHSAINGRRLVRFHYMNAKDERQDRLVEPVSLLLKYNAWYLYGYCR 178 Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 VF L + + L E + R ++ Sbjct: 179 SRDDYRVFKLTRMSELLALTECYERKHNIH 208 >UniRef50_B2A042 Helix-turn-helix type 11 domain protein n=1 Tax=Opitutus terrae PB90-1 RepID=B2A042_OPITP Length = 316 Score = 66.5 bits (161), Expect = 7e-10, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 44/222 (19%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSG-------Y 63 RL ++ L + +LA F V++RT+ RD E + + ++G Sbjct: 6 RLVAMVMYLQGRRVVKAEELARHFEVNIRTIYRDVAALGE--AGVPVAGEAGVGYSLVRG 63 Query: 64 CRLRTAGSEMQMVPDVLIF-----------AHRSG--------LAGLFPGLDRRLVNALL 104 L + +F A +G + + P + + L Sbjct: 64 YHLPPVM--FTAEEAIALFIGGEMVKQFADASLTGPMDSAVLKIRSVLPRERQDDLERL- 120 Query: 105 MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLL 159 I + + + + + QAI R + + GR + P + Sbjct: 121 ---TRATAIFGSPRLSTGIDQRTLLPIEQAIVSSRVLRMTYRGRARAEETRRDVEPLGVT 177 Query: 160 IHQQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 H WYLVA + F LD + ++ L E F Sbjct: 178 YHDGVWYLVAWCRLRKDLRYFRLDRVRALEVLGERFAPRPDF 219 >UniRef50_B1CBH7 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBH7_9FIRM Length = 299 Score = 66.5 bits (161), Expect = 7e-10, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 13/197 (6%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCRLRT 68 RL II+ L+ E ++ LA +F VSVRT+ RD + + + G Sbjct: 5 RLMGIITTLLNKEKVTAPFLAGKFEVSVRTINRDILDLCKAGIPIVTTRGAGGGIYLDPD 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPC--VIAPANPVPSPSGA 125 + ++ + I A +GL G+ D LL ++P + + S + Sbjct: 65 FKMDKSLLKEDEINAIYAGLKGITSISDNNKYELLLDKFKDNPKNDLDIDLSSYYKKSLS 124 Query: 126 LSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTL 180 ++ +AI + + +G+ + P L +WYL A +F L Sbjct: 125 DKIEKMQKAINNKLLLEFDYFSKKGKSHRVVEPYTLTFKWSSWYLYAYSLEREDFRLFKL 184 Query: 181 DEIHLIQPLQETFRRND 197 + ++ ETF + Sbjct: 185 NRSINLKETGETFLSRE 201 >UniRef50_B0MJK4 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MJK4_9FIRM Length = 301 Score = 66.5 bits (161), Expect = 7e-10, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 17/203 (8%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGY------- 63 + RL II L+ + ++ +LA F VSVRT+ RD + + G Sbjct: 3 SSRLFEIIYILLEKKKVTAPELAERFEVSVRTIYRDIDALSSAGIPVYCTQGKGGGIGLL 62 Query: 64 --CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-RRLVNALLMCDESPCVIAPANPVP 120 + + + +L+ + +++L D+ V + Sbjct: 63 EDFVMDKSALTEEEQSQILLSLQCMAVTNHMDAKKLLSRLSSLFQKDDENWVYVDFSRWN 122 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE--HEGH 174 F L +AI R V + P +L WYL A G Sbjct: 123 PRGEKELFETLKEAILNREVVIFDYYNAKGEYSRREAEPMQLYFRGMDWYLTAFCKKSGE 182 Query: 175 IAVFTLDEIHLIQPLQETFRRND 197 I +F L + + +E F R D Sbjct: 183 IRIFKLKRLKNLVKTEERFLRKD 205 >UniRef50_B1I4N6 Regulatory protein, DeoR n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4N6_DESAP Length = 336 Score = 66.1 bits (160), Expect = 9e-10, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 63/207 (30%), Gaps = 39/207 (18%) Query: 29 SVRKLAAEFGVSVRTLRRDF---RERLMYLDLEY---QSGYCRLRTAGSEMQMVPDVLIF 82 SV +L EF S RT+ RD R++L L+Y + GY R + + + Sbjct: 34 SVARLVEEFETSRRTIERDLEYLRDQL-NAPLKYDRTRGGYYYARDFQLPPFTLSEGEVL 92 Query: 83 AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQ--------- 133 A G L + E C+ A P + I Sbjct: 93 ALFLGSKLLSQYRGTPFEKLITDAFEKICL---AMPETVSLDFSLVNQTISFAVERPRGD 149 Query: 134 -------------AITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVA--EHEG 173 A+ R V L R+ P L HQ WYL+ Sbjct: 150 EQHLLHLQELLGRALRERCTVDLDYYSASRDADTSRRVDPYHLRHHQGAWYLIGHCHFRN 209 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLC 200 + +F LD I ++ F + + Sbjct: 210 EVRMFALDRITNLRVTDAHFTPDPAFD 236 >UniRef50_Q897M9 Conserved protein n=2 Tax=Clostridium RepID=Q897M9_CLOTE Length = 329 Score = 66.1 bits (160), Expect = 9e-10, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 30/212 (14%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS----GYCRLR 67 ++R+ I RL G ++ ++LA EFGV ++++RD + Y Y+ YCR R Sbjct: 15 SLRVLTIYERLSTGGIINKKELAYEFGVDEKSIQRDINDLRAYFQECYKEDVRIKYCRSR 74 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLF---PGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 + L + + + + +++ ++ LL C+ + + Sbjct: 75 KGYILEKDKFSYLNYKEITAITKILLDSRAFNKKEMSLLLNKVILQCIPGERENIKNILN 134 Query: 125 ALSF---------------WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165 + + + I R+ + + + +L P L+ ++ + Sbjct: 135 KEVYNYVELQHGKKLIDILLDIEECIRKRKYINIKYKRVDKSLINRKLKPIGLIFNKFYF 194 Query: 166 YLVAE----HEGHIAVFTLDEIHLIQPLQETF 193 YL+A E IA + +D I + +E F Sbjct: 195 YLIAYIESKEEDFIATYRVDRIEEYKIFEEYF 226 >UniRef50_C6CXS9 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXS9_PAESJ Length = 327 Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 39/246 (15%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD---- 56 M + + + R+ ++ RL G + + A EF VS + ++RD E +++ Sbjct: 1 MKRENDQGELKFKRMLILYERLTRGHYIQKQAFADEFNVSKKAIQRDLEEMRFFVEEYFQ 60 Query: 57 -----LEYQSG-YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP 110 ++Y G L+ S +V++ + + FP + + +L + Sbjct: 61 GEKVQIKYIKGKGYFLKRENSTRLTGEEVMLLSKVLLESRAFPKSEMK---EMLDKIIAQ 117 Query: 111 CVIAPANPVPSPSGALSFW---------------RLIQAITGRRRVTLIAEGR-----RC 150 C + V SF L AI+ +R VTL Sbjct: 118 CEDSRQAQVYKAIRNESFLYQPVGHNKLLSKTIGDLNSAISEKRTVTLHYMRSGDVEPVT 177 Query: 151 ERLAPCRLLIHQQTWYLVAEHEGHIA----VFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206 L P +L + +YL+A G V+ LD I FR ++ ++ Sbjct: 178 RLLEPLSILFSEYYFYLIANISGLEKEYPAVYRLDRIQSYSIENHHFRTDEK--TRFQEG 235 Query: 207 VFIQAL 212 F + + Sbjct: 236 EFRKQI 241 >UniRef50_D2QV53 Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QV53_9SPHI Length = 324 Score = 65.7 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 73/226 (32%), Gaps = 30/226 (13%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG 62 + RL+ RL +++ L ++ +LA F VS RT+ RD R + + G Sbjct: 2 NDSETTRLS-RLVALLTLLQTKRMVTATELANRFSVSTRTIYRDIRALESGGVPIVTHEG 60 Query: 63 -------YCRLRT------AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES 109 RL + + + A L G + L + Sbjct: 61 KGYSLLEGYRLPPILFTREEAIALLTAEKLASRLTDAATAQL-SGAAMDKLRTALRHSDR 119 Query: 110 PCV------IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRL 158 + I P + ++ +L+ A+T R V + + + P L Sbjct: 120 DYLETMAPRILVMEPASASERPNTYQQLVTAVTAHRVVRITYQAAETGESTDREIEPIGL 179 Query: 159 LIHQQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRL 202 Q W++VA F LD I + + E+F + Sbjct: 180 -YLSQHWHVVAFCRLRQAFRNFRLDRISSLALVDESFPARTETLQQ 224 >UniRef50_B3PHR5 Predicted transcriptional regulator n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PHR5_CELJU Length = 244 Score = 65.7 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 44/236 (18%) Query: 12 AVRLSLIISRL-VAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG------- 62 A RL + + L L+ R+L+ VS RT+ RD + L + +E ++G Sbjct: 4 AERLFQLTTLLRNRRTVLTARQLSEHLQVSERTIYRDIQSLSLSGVPIEGEAGVGYRLSH 63 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSG--------------LAGLFPGLDRRLVNALLMCDE 108 +L + + V +L+ A + + L L DE Sbjct: 64 RYQLPPLMFDREEVEALLLGARMVSGWGDMDMARHANQAIQKILAVLPD----HLRHSDE 119 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQT 164 + ++ P + AI +R+ + E R + P L+ + Sbjct: 120 TLPLLVPNMEEVQRYYTAHSQTIRAAIRIHQRLRIDYIRADEERSSRVIEPLGLIFWGKV 179 Query: 165 WYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218 W LVA + F LD I + ETF ++ ++L HF I Sbjct: 180 WTLVAWCQLREDYRTFRLDRIQSLDMTGETFATHEQ-----------KSLKHFLHI 224 >UniRef50_C0A8I4 Helix-turn-helix, type 11 domain protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8I4_9BACT Length = 363 Score = 65.7 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 70/220 (31%), Gaps = 34/220 (15%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF---RERLMYLDLE-----YQSGYC 64 R+ I + L G+ ++ KLA V+ +T+RRD R+RL L + + Sbjct: 34 ERIQAIHAALAGGKAVNALKLANALEVNDKTIRRDLAFMRDRLE-LPVSEYDPVRGGFFY 92 Query: 65 RLRTAGSEMQMVPDVLIFAHRSG---------------LAGLFPGLDRRLVNALLMCDES 109 A + + + + A L F L L + + Sbjct: 93 TEAVANLPLMQITEGELLALMVARQAVEAYRGTPYAHTLERAFAKLTAGLGDVVSFSASG 152 Query: 110 ---PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIH 161 P I+ N + F +A+ T + + G R+ P L Sbjct: 153 AGLPGAISFRNVGMAAVNTAVFTAASRAVLKCEESTFLYQKPDDYGPELRRVQPYHLACI 212 Query: 162 QQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199 WYLV + F L IH + + F R+ Sbjct: 213 GGMWYLVGHDLDRQAMRTFALPRIHDFKTTKHQFVRDPDF 252 >UniRef50_A9AWW0 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWW0_HERA2 Length = 319 Score = 65.7 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 38/222 (17%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRR------DFRERLMYLDLEYQ---SGYC 64 RL I+ L + + + +LA+ +S RT+RR D + +E + G Sbjct: 7 RLLTILELLQSHQRMRGAELASRLEISQRTVRRYVVMLQDMG-----IPVEAERGPDGAY 61 Query: 65 RLRTA----------------GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-- 106 L ++M+ + + + G L+R + LL Sbjct: 62 YLGRGYTIPPLMINPTEALALVLGLRMIHALQFPVDATAIEGAIAKLERVMPTILLDQVR 121 Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQ 162 + P P+ L A+ R++V L + P ++ +Q Sbjct: 122 AFQEAITFHVAPPPALLQPSIVASLSVAVHTRQQVWLSYQTYNGDASVRVFDPYGIVYYQ 181 Query: 163 QTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRL 202 WY V + F +D I ++ L ++F R L Sbjct: 182 GYWYSVGYCHQRNDLRTFRIDRIQELKLLNQSFERPQDFDAL 223 >UniRef50_B5D329 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5D329_9BACE Length = 307 Score = 65.7 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 69/208 (33%), Gaps = 38/208 (18%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFG-----------VSVRTLRRDFRERLMY--LDLEY- 59 R LI+ +L +S R+L E S TL+RD E LD+ Y Sbjct: 10 RWILIVRKLQNQPYISFRELQRELERELAFRGYDPVCSDATLKRDLNELKEEFGLDITYS 69 Query: 60 -QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP 118 L + ++ L P I P Sbjct: 70 RTHKGYSLPAVRKGWLDMDCIIEPIEVM---------------TALGNHSLPEYILPEQY 114 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWY-LVAEHE 172 + LS+ L+ AI R++V + R L+P L + WY L AE Sbjct: 115 QTRGTQYLSY--LLHAIRQRQKVHFLYRKYADNTRSERTLSPYALKEWRGRWYVLGAEES 172 Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLC 200 G I F LD I + L E F +N++ Sbjct: 173 GKIKTFGLDRIEQLTLLPEIFSKNEAFD 200 >UniRef50_C4KYJ3 Helix-turn-helix type 11 domain protein n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KYJ3_EXISA Length = 296 Score = 65.7 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 28/216 (12%) Query: 17 LIISRLVAGETLSVRKLAAEFGVSVRTLRRDF--RERLMYLDLE---YQSGYCRLRTAGS 71 +I L G + +LA E G S+RT++RD E L Y GY L Sbjct: 7 QLIRLLNRGRRFTAEELAQETGASIRTIQRDMLSLEELGYPIWSVPGTGGGYEMLPNRLL 66 Query: 72 EMQMVPD------VLIFAHRSGL-----AGLFPGLDRRLVNALLMCDESPC------VIA 114 + + L + + L VN L E+ ++ Sbjct: 67 PPLHLREQEAVALYLTLKWMEHIPDVPFGDIRSTLSDWYVNELPHDVETKIRRLERNILW 126 Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEH 171 N + + QAI + ++ + G R +AP + + WY+ Sbjct: 127 LGNKQIPKAPFTKD--IYQAIERKNKIEMTYRSTNGSRTFPIAPVGMALLDLKWYVFGLS 184 Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207 E + +D I +Q L+E+F ++ L L+++ Sbjct: 185 ELGFRQYRIDRIEAVQVLEESFE-SEDLVTLLKESD 219 >UniRef50_Q0S564 Possible transcriptional regulator n=4 Tax=Rhodococcus RepID=Q0S564_RHOSR Length = 318 Score = 65.3 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 25/214 (11%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGY----CRL 66 + RL ++ RL + ++LA E GVSVRT+ RD + L +SG L Sbjct: 3 SSRLVEVMLRLEGSRGATAQQLADELGVSVRTVYRDVTALSAAGVPLWTESGPGGGIRLL 62 Query: 67 RTAGSE----------MQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116 S+ M+ V A GL + +L+ AL + + + Sbjct: 63 DGWQSKLGGMTGAETSALMLLGVPSIADDLGLRDVAAAAQSKLLGALPVPLRAGAQLWRD 122 Query: 117 NPVPS-------PSGALSFWRLIQAITGRRRVTLIAEGRR---CERLAPCRLLIHQQTWY 166 P + ++ RR+ + L P L+ WY Sbjct: 123 RLYVDAPGWFDGPRDNGELPVVASSVLEGRRLGIRYRKGSRSAARTLDPLGLVAKAGVWY 182 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 LVA+H G + + I L++ R D+ Sbjct: 183 LVAQHRGRTLSYRVSRISDATVLKQASVRPDNFD 216 >UniRef50_B0MYF1 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MYF1_9BACT Length = 307 Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 41/211 (19%) Query: 14 RLSLIISRLVAGETLSVRKL------------AAEFGVSVRTLRRDFR--ERLMYLDLEY 59 RL++I+S+L + + +L + G ++RTL+RDFR E L + + + Sbjct: 9 RLAIIVSKLNSKHYVPAEELVDYVSYTIRARYSDTAGCTLRTLQRDFRTIEELFGVTIRH 68 Query: 60 QS--GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117 GY GS +L F + + + L+ + +I P Sbjct: 69 DKLCGYYIDERYGSAEDYEALLLNFELLNAID------SDSTIQKYLLPEHHRAIILPNI 122 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCER-LAPCRLLIHQQTWYLVAEH 171 L+ AI R V G+ + L P L QQ WYL+ Sbjct: 123 AE-----------LLDAIRNRHPVEFDYILVRHGGKVVRKCLHPYFLKESQQRWYLIGYD 171 Query: 172 -EGHIAVFTLDEIHLIQPLQ-ETFRRNDSLC 200 + + F LD + ++ L E F RND++ Sbjct: 172 TDDKLKAFGLDRLSSLRILSRERFMRNDTID 202 >UniRef50_C9RCX8 Transcriptional regulator-like protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RCX8_AMMDK Length = 330 Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 29/205 (14%) Query: 24 AGETLSVRKLAAEFGVSVRTLRRDFR---ERL---MYLDLEYQSGYCRLRTAGSE--MQM 75 AG+ + R+LA EFGV RT+ D + +RL + D Y Sbjct: 19 AGKYPNPRQLAQEFGVQERTIYLDRQFMVDRLGAPIAYDRRRGGWYYTDPNWALPTVFVT 78 Query: 76 VPDVLIFAHRSGLAGLF--PGLDRRLVNALLMCDES------------PCVIAPANPVPS 121 ++L F +A + ++ L++A+ S V +P Sbjct: 79 EGELLAFLLSVEVAKRYLGTPFEKPLLSAVEKIRRSLKGQVEVNLAELQAVSFLTSPSSV 138 Query: 122 PSGALSFWRLIQAITGRRRVTLIA----EGRR-CERLAPCRLLIHQQTWYLVAEHE--GH 174 + L +AI R+V + G + P L + WYLVA Sbjct: 139 AVNERLLFDLQRAIVENRKVKINYFTASRGSWQERVVEPYHLFNLRGDWYLVAFDHFRQD 198 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSL 199 + VF I Q L E F R+ Sbjct: 199 MRVFHTGRIDRWQVLSEVFVRDPHF 223 >UniRef50_O34920 Uncharacterized HTH-type transcriptional regulator yobV n=2 Tax=Bacillus subtilis group RepID=YOBV_BACSU Length = 313 Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 27/225 (12%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67 RL ++ L++ + + +LA F VSVRT+ RD + G + Sbjct: 4 ERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIGIME 63 Query: 68 TAGSEMQMVPDVLIFA---HRSGLAGLFPGLDRRL----VNALLMCDESPCVIAPANP-V 119 T E + + + +FA ++ ++ + + L+ + Sbjct: 64 TYRLEREWLKEEELFAIASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTEKWF 123 Query: 120 PSPSGALSF-------WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLV 168 + ++ AI ++ P L+ WYL Sbjct: 124 IDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSASGETLLRETEPYTLVCKAGHWYLY 183 Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRND-SLCRLVEDPVFIQ 210 A F L+ + + L +TF R D L L D + Q Sbjct: 184 AYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQ 228 >UniRef50_A9KIF8 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIF8_CLOPH Length = 307 Score = 64.9 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 22/198 (11%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCRLRT 68 RL I L+ + S LA F VS RT+ RD L + + GY ++T Sbjct: 5 RLLAITIYLLNHKRTSAGDLANRFEVSTRTIMRDIDSLCLAGIPVISTFGVDGGYEIMKT 64 Query: 69 AGSEMQMVPDV---LIFAHRSGLAGLFPGLDRRLVNAL-----LMCDESPCVIA-PANPV 119 E Q+ ++ I A GL+ +P DR L N + L + + ++ Sbjct: 65 FQMEKQVAGEIDYSFILAALKGLSTAYP--DRELENTIEKLQSLGENSTQSIVIDLGVAN 122 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHI 175 L AI V + + P ++ WYL+A H Sbjct: 123 EHKGINSLLSMLSHAIKIEHIVEFTYTNTDNITKSAVVEPVSIIYKWYHWYLLAYQPSHE 182 Query: 176 A--VFTLDEIHLIQPLQE 191 ++ L + + + Sbjct: 183 TYCLYKLIRMEHLTIHDQ 200 >UniRef50_D1AKN4 Helix-turn-helix type 11 domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKN4_SEBTE Length = 322 Score = 64.9 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 25/229 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY----QSGYCRLRT 68 R+ I+ L + +S ++LA EF VS RT+ RD M + +E + G + Sbjct: 5 RILNILYYLNRYKKVSAKRLAEEFEVSQRTIYRDLDILENMGIPIERKMGFEGGISIIEN 64 Query: 69 AGSEMQMVPDVLIFAHRSGL--AGLFPGLDRRLVNALLMCDES----------PCVIAPA 116 E + + +L+ S Sbjct: 65 FKLENINFSK-SELTRIISILNNYYYKDSKTKLLIEKFKNIISDKEMEEQRKLDYFKIEE 123 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVA--E 170 + + + +AI + + + +L P + I + YL A Sbjct: 124 GYLMHKREKENISSIKKAIESKNIIEVKYINSDNVISERQLEPYIISIKGNSVYLFANCL 183 Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSL-CRLVEDPVFIQALPHFRFI 218 + +F + I I+ E F + + ++ F H I Sbjct: 184 LRKELRIFRVSRILEIKITNEKFTEDPDISEKIYSQKGFFSDYIHNEII 232 >UniRef50_A8MEN8 Helix-turn-helix type 11 domain protein n=14 Tax=Bacteria RepID=A8MEN8_ALKOO Length = 299 Score = 64.6 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 68/211 (32%), Gaps = 18/211 (8%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYCRLRTAGS 71 RL I+ ++ ++ +LA +F VSVRT+ RD + + G Sbjct: 4 HRLFRILYYILEKGKVTANELADKFEVSVRTIYRDMDSISSAGIPIYATQGKGGGIEIAD 63 Query: 72 EMQMVPDVLIFAHRSGLAGLFPGLDR--RLVNALLMCDESPCVIAPANPVPSP------- 122 E + +L + + GL+ +L + L+ S Sbjct: 64 EFVLSKSLLTENEKEQIMAALHGLENTSKLYESELITKLSALFKMRNTNWIEIDFTNWQN 123 Query: 123 --SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174 F + AI + ++ E + P RLL Q WYL A Sbjct: 124 NKIYEKIFNDIKSAIISKNIISFSYFSSNEEETNRSVKPVRLLFKGQDWYLYAFCLLRED 183 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 F L I ++ L F + L ++ Sbjct: 184 FRYFKLSRIKQLEILSINFEDDFDNITLKKE 214 >UniRef50_D1ARJ4 Helix-turn-helix type 11 domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARJ4_SEBTE Length = 309 Score = 64.6 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 34/215 (15%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEY----QSGYCRLR 67 RL II L+ + + +LA F VS RT+ RD + + G L Sbjct: 4 ERLLSIIVILLERKKVPAPRLAEIFEVSTRTIYRDIDTLNAAGIPVITYPGVNGGVGILE 63 Query: 68 TAGSEM--QMVPDVLIFA-----------------HRSGLAGLFPGLDRRLVNALLMCDE 108 E D+ L G+ P + + Sbjct: 64 EFKLEKNLFTSEDLSSLLTGLSSISSAFSSSEITNALIKLKGIIPEKRLKDI----EKKT 119 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQT 164 + +I + + + + A+ + +T E + ++ P R+++ Sbjct: 120 NRIIIDLTPWKNTNNVSSDLKSIKSAMDKNKILTFKYEDRQRKKSTRKIEPYRIILKGND 179 Query: 165 WYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRND 197 WY+ F L I ++ +++F + Sbjct: 180 WYVEGFCILRNDFRYFKLSRISDLKITKKSFAPRE 214 >UniRef50_A9AUR2 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUR2_HERA2 Length = 321 Score = 64.6 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 28/215 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYC---RLRTA 69 RL ++ L + + +S +LA + RT+RR ++ + +E + G RL+ Sbjct: 7 RLLGVLELLQSRQQISGSELAQRLEIHPRTVRRYIQQLQDMGIPVEAERGIYGAYRLKPG 66 Query: 70 G----------------SEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES--PC 111 + + ++ R+ ++R L L+ + Sbjct: 67 QRVPPLLFTEQEILALSLGLLTIRELQFPVERATAETTLAKIERVLPAGLVQHARALQAA 126 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167 + +L A+ ++V L + + P ++ ++ WYL Sbjct: 127 ISIQLGIRSPRIEPAWLLQLSLAVQYCQQVQLEYLSAQQNMTERTIEPYGIVFNEGAWYL 186 Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 V + + VF LD I ++ L F R S+ Sbjct: 187 VGYCDLRRAMRVFRLDRIQAMRLLDSNFERPASID 221 >UniRef50_C4DT59 Predicted transcriptional regulator, COG2378 n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DT59_9ACTO Length = 339 Score = 64.6 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 28/205 (13%) Query: 23 VAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEY----QSGYCRLRTAGSEMQMVP 77 G L+ +LAAE VS RT+ RD L+ + + + GY L + + + Sbjct: 15 NRG-RLTAAQLAAELEVSERTVYRDIGALLVSGVPIRAITGPEGGYQLLDGYRTRLTGLT 73 Query: 78 D----------VLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL- 126 + A GL G G +L+ AL Sbjct: 74 AAEAESLFVAGIPYAAAGLGLVGTLSGAQLKLLAALPQQARDRATGFSERFYFDAPNWYA 133 Query: 127 --SFWRLIQAITG------RRRVTL---IAEGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175 R + A+T R R+ A + P +++ WY+VA EG + Sbjct: 134 EPDQTRFLGAVTDATWSQHRLRIRYRRWEAPQEVERVIEPFGVVLKAGRWYVVARVEGSL 193 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLC 200 F + I + + E F R Sbjct: 194 RTFRISRILELDTMDEEFTRPADFD 218 >UniRef50_UPI0001B58C22 helix-turn-helix type 11 domain-containing protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B58C22 Length = 322 Score = 64.6 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 25/213 (11%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYC------ 64 A RL ++ L +V +LA E GV+ RTLRRD R + L + G Sbjct: 3 AERLVALLFTLHRKRAGTVGELAGELGVTERTLRRDLAALREAGVPLWSEPGRHGGIRLV 62 Query: 65 -----RLRTAGSEM---QMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116 RL S + DV GL ++ ++ + Sbjct: 63 DGWRSRLDGLTSREAVALLALDVPDALAGLGLGTAVAAAHAKVSASMPAQLQEQARTVAG 122 Query: 117 NP-------VPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWY 166 SP A + + +A+ ++R+ + R L P L++ WY Sbjct: 123 RFHLDASAWFTSPDDAAALPAVAKAVWTQQRLDVRYRRRDKVTRRTLDPLGLVLKAGVWY 182 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 LVA + + + + + + ETF R + Sbjct: 183 LVARVDADLRTYRVSRLEGVAETGETFARPEEF 215 >UniRef50_C8WKG8 Helix-turn-helix type 11 domain protein n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WKG8_EGGLE Length = 313 Score = 64.2 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 30/210 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSG-----Y 63 RL I+ L+ T + +LA + VS RT+RRD Y+ G Sbjct: 5 RLFEIVYLLMDRGTATTGELARKLEVSERTVRRDIDALSAAGVPVYMTRGKGGGVHLMDG 64 Query: 64 CRLRTAGSEMQMVPDVLIF--------AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 L + + D++ A L R + + Sbjct: 65 YVLDRSVLSEREQDDIMAALSALNRTGASDDASDETAVRLGRLFQRENVNWLDMDFSFWG 124 Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA-- 169 A P + +F + A GR ++ R + P +L+ + +WYL A Sbjct: 125 APP----NYRAAFDTIRDAAIGRHPLSFAYFDAEGNRTERTVEPAQLMFKESSWYLRAWC 180 Query: 170 EHEGHIAVFTLDEIHL--IQPLQETFRRND 197 +F L I + L ETF + Sbjct: 181 RERDAWRMFKLFRIDWETLDVLPETFEARE 210 >UniRef50_C2KY98 Transcriptional regulator n=5 Tax=Clostridiales RepID=C2KY98_9FIRM Length = 317 Score = 64.2 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 52/228 (22%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-------------LEYQ 60 R+ I S+L+ G ++ AA +GV+ R+++RD + ++D + Sbjct: 11 RILGIYSKLINGYVVNKADEAANYGVNERSIQRDIDDIRNFIDSDPLMQGMMNSVIYDRA 70 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLF-----------------PGLDRRLVNAL 103 RL T ++L + F P +++LV+ L Sbjct: 71 VSGYRLETLYRIRLTNSEILAVCKILLDSRAFTKKEMSEILRKLIECCVPKKNQKLVDDL 130 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRL 158 + +E V P + W L QAI + + + +L P + Sbjct: 131 IKNEEFHYV----EPRHKIDFLDNLWELGQAIKSCSYIEISYTRMKDKATVQRKLRPVGI 186 Query: 159 LIHQQTWYLVAEHEGH-------------IAVFTLDEIHLIQPLQETF 193 + + +YL A + ++ LD I I+ L E F Sbjct: 187 MFSEYYFYLTAFIDDKEVRKDFDVINDSFPTIYRLDRISSIKVLDEHF 234 >UniRef50_UPI00019790EA hypothetical protein HcinC1_09731 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019790EA Length = 194 Score = 64.2 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 24/196 (12%) Query: 4 AERRHDRLAVRLSLIISRLVAGET---LSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 + ++ R+S I + L E + ++LA EF VS+RTLRRD + +EY Sbjct: 2 SLHDYETKMARISKIFAALHNPENNGVICAKELAKEFSVSLRTLRRDVE----NMGVEYS 57 Query: 61 --------SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD--RRLVNALLMCDESP 110 G+ + + FA+ G A L L + + + Sbjct: 58 YKKDKIYFHGHYITKENDELSMAFLLLKSFAYSMGGATKTQMLSLLESLESKSQENNRTD 117 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-------EGRRCERLAPCRLLIHQQ 163 N S L AI ++ + + P ++L Sbjct: 118 IFFTRTNLGEITLETESILLLQNAIKEHIIISFKFLQELNNTKTHTQREIMPLKILNFNG 177 Query: 164 TWYLVAEHEGHIAVFT 179 WYL+ V + Sbjct: 178 QWYLLGLESSDEKVLS 193 >UniRef50_UPI0001789485 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789485 Length = 316 Score = 64.2 bits (155), Expect = 4e-09, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 35/230 (15%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG---------- 62 RL I L+ LS ++LA F VS +T+ RD + + G Sbjct: 5 RLLAITVLLLNRGRLSAKELADRFEVSSKTIYRDMDTLCQAGIPIVAHQGITGGFEIMEH 64 Query: 63 ----YCRLRTAGSEMQ---------MVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES 109 L + D + + L +++ L + + Sbjct: 65 YMIDKYWLSAEEMSTLVTAVKGLSSALEDPQMGMLLEKIKALLRRVEQGLGDEY---RKE 121 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165 P V+ + L QAI +RRV + + P L + W Sbjct: 122 PVVMDFQPWGQRQGLKPAVGLLKQAIHDKRRVQMEYIDAEGSAERRTIEPASLFLKGNVW 181 Query: 166 YLVAE--HEGHIAVFTLDEIHLIQPLQETFRRN--DSLCRLVEDPVFIQA 211 Y+ A +F L + I+ L E + RL D + A Sbjct: 182 YVQAFCLEREDFRLFRLSRMQDIKMLSEAYEPRPWPGKERLEWDSSWSNA 231 >UniRef50_C6CS13 Helix-turn-helix type 11 domain protein n=3 Tax=Bacillales RepID=C6CS13_PAESJ Length = 315 Score = 64.2 bits (155), Expect = 4e-09, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 79/246 (32%), Gaps = 52/246 (21%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL--DLEYQSGY-------C 64 R I+ L + + LA+ + SVRT+ RD + L + + G+ Sbjct: 6 RQLAIMLELQRSKVIRAEDLASLYETSVRTIYRDI-QALSEMGVPIFGAPGHGYSLMEGY 64 Query: 65 RLRTAG---------------SEMQMVPDVLIFAH--RSGLAGLFPGLDRRLVNALLMCD 107 L G E ++ D A +S + + P R + Sbjct: 65 FLPPIGFSAEEAVALLMGADFIEQRLDGDYARVAKAAKSKIEAILPETVREESTRV---R 121 Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---------ERLAPCRL 158 E+ ++ P ++ +AI RR+++ + + +AP L Sbjct: 122 ETMRLLNAGEPRTGLREKDILGQVRRAILERRKISFSYKKKTPEADGNRNSTREVAPYGL 181 Query: 159 LIHQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETF---------RRNDSLCRLVEDPV 207 Q W L+ I F L + + L F R R ++ + Sbjct: 182 AFAQGNWMLIGHCGLRQDIRHFRLSRMTELAVLDTPFAMPHGFNLNRYRPQDDR--KEHI 239 Query: 208 FIQALP 213 +I+A P Sbjct: 240 WIRANP 245 >UniRef50_A4C3H1 Predicted transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A4C3H1_9GAMM Length = 231 Score = 64.2 bits (155), Expect = 4e-09, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 35/219 (15%) Query: 10 RLAVRLSLIISRLVAGET--LSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-YCR 65 R A RL II+ L+ G ++ +++A + VS RT+ RD + L + +E ++G R Sbjct: 2 RKAERLFQIIT-LLRGRRTVITAKQIAQQLEVSERTVYRDIQALILSGMPIESEAGIGYR 60 Query: 66 ----------------LRTAGSEMQMV----PDVLIFAHRSGLAGLFPGLDRRLVNALLM 105 L +MV + L + S L + L +L ++ Sbjct: 61 LQPKFDVPALMFNPDELDALLLGARMVQGFGSEQLAKSAASALNKIHSVLPEQLHRQIVQ 120 Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIH 161 DE ++ P + + RL AI ++ LI + + + P L+ Sbjct: 121 QDER--LLVPNWHLKEATQYSDLIRL--AIKQHLKLALIYQDEKLNLSERTVLPLGLIFW 176 Query: 162 QQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDS 198 + W LVA E +F LD I + L TF + Sbjct: 177 GRAWTLVAWCEKRSDYRLFRLDRITQLTTLTCTFSLHQH 215 >UniRef50_Q65L70 Hypothetical DNA-binding protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65L70_BACLD Length = 315 Score = 63.8 bits (154), Expect = 4e-09, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 70/234 (29%), Gaps = 39/234 (16%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67 RL ++ + + +LA EFGVS RT+ RD E +Y + GY L Sbjct: 5 ERLIELMMTIHTKRKFTAGELAVEFGVSYRTVLRDLDELSALGVPIYSETGANGGYYLLN 64 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVI---APANPVPS--- 121 L F A F + +L E+ V+ P + Sbjct: 65 EPVLPP------LFFTQSEAAAMFFAYQSLQFFGSLPFDAETRMVLKKFYRHLPPETQER 118 Query: 122 ---------------PSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQ 163 P A L+ A + +T++ +G + P L Sbjct: 119 IDAMKDRIVFWNPHRPKAAEHLETLLDAAVTQSVLTVVYDGTDECTERSIQPIGLYSWNG 178 Query: 164 TWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRF 217 WY A + F L I ++ + R + P + + H Sbjct: 179 FWYCPA-YCFKRQAFRLFRADRILRAEK---ADSGQARQLPYPSVLSWIKHSES 228 >UniRef50_A6LYP1 Helix-turn-helix, type 11 domain protein n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYP1_CLOB8 Length = 304 Score = 63.8 bits (154), Expect = 4e-09, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 18/197 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL II L+ ++++ R+L+ F VSVRT+ RD +Y G + Sbjct: 5 RLFQIIYILLKRKSITARELSEHFEVSVRTIYRDIDALCQAGIPIYSSQGKGGGISLVDK 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRL--VNALLMCDESPCVIAPANPVPSP 122 + + +V L L + ++ L ++ L + + + S Sbjct: 65 FIFDKSLFSEVEQDKILLALQSLSAVGYDDINDVLSKLSNLFQKSDVNWIEVDFSNWGSE 124 Query: 123 SGALSFWRLI-QAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--HEGHI 175 + LI ++I ++ + + + P +LL + WYL Sbjct: 125 RKQKEIFNLIKESILKQKVINFSYFSADGMKSNRYVEPFKLLFKDKAWYLQGYCLERTAF 184 Query: 176 AVFTLDEIHLIQPLQET 192 F + ++ I E+ Sbjct: 185 RTFKITRMNDINITDES 201 >UniRef50_C7PP77 Helix-turn-helix type 11 domain protein n=3 Tax=Sphingobacteriales RepID=C7PP77_CHIPD Length = 235 Score = 63.8 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 78/224 (34%), Gaps = 32/224 (14%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY 59 M ++ + RL RL+ I+ RL+ + ++ +LAA+F VSVRT+ RD R + + Sbjct: 1 MPPSDMK--RL-TRLTAILIRLLTKKIVTASELAAKFDVSVRTIYRDIRTLEQAGVPVVT 57 Query: 60 QSG-------YCRLRTAGSEM-------------QMVPDVLIFAHRSGLAGLFPGLDRRL 99 + G R+ D A SG L R Sbjct: 58 EEGVGYTLMDGYRIPPVMFTESEANALITAEEIVSGNKDASFVAAFSGATAKIKALLRET 117 Query: 100 VNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAP 155 + + + ++ A S +L ++T + V + + P Sbjct: 118 MKEKVNLLQDRTIVKQAAYKEHSS--SCLSQLQISMTNAQLVKIKYMDEHAVATDRIIEP 175 Query: 156 CRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRND 197 W ++A VF LD I L++PLQE F Sbjct: 176 FAFYGTGDNWLIIAYCRLRKDFRVFRLDRIVLLEPLQEKFTPQK 219 >UniRef50_B9YCC8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCC8_9FIRM Length = 305 Score = 63.8 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 64/207 (30%), Gaps = 28/207 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL-----DLEYQSGYCRLRT 68 R I+ L+ + ++ ++LA F VSVRT+ RD L +L + + G Sbjct: 5 RCFEIVYLLLERKKITAQELADRFEVSVRTIYRD----LDFLSQAGIPIYARRGKDGGIE 60 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS------- 121 + V A + L L GL V + + P S Sbjct: 61 LWDTFVLNKTVFSEAEKQELTALLEGLRSTGVQEETQVLQKVSALL-GQPRQSWIEADFS 119 Query: 122 -----PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVA--E 170 F L AI RR + G + P RL+ Q WY Sbjct: 120 LWSKTADQPDLFSLLRHAICNRRCIQFDYYGLNREATHRIVEPLRLVFKAQAWYCYGWCT 179 Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRND 197 F + + + L E+F Sbjct: 180 LREEERFFKIVRMREVVELDESFEPRP 206 >UniRef50_B5GB15 DeoR-family protein transcriptional regulator n=2 Tax=Actinomycetales RepID=B5GB15_9ACTO Length = 327 Score = 63.4 bits (153), Expect = 6e-09, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 76/247 (30%), Gaps = 44/247 (17%) Query: 22 LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMV 76 L G S +LAA GV+ RT+RRD ERL L L+ G RL ++ Sbjct: 5 LQRGRNWSGPELAARLGVTARTVRRDV-ERLRALGYPVHALQGVGGGYRLGAGSELPPLL 63 Query: 77 PD-----------------------VLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVI 113 D + + + P R V+AL E Sbjct: 64 LDDEEATATAASLLAGAGGGGPGAGEAALRALAKIDRVMPARLRHEVSALAGAVE---FF 120 Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWYLVAE 170 P+ + L A R R+ P RL+ + WYL+A Sbjct: 121 EGGPERVEPA---TLVTLAGACRDEVEARFRYPSRGEVTERRVEPYRLVASDRRWYLLAY 177 Query: 171 HEGH--IAVFTLDEIHLIQPLQETFRRND---SLCRLVEDPVFIQALPH-FRFIQHSLLT 224 F +D + + F V+ V A PH RF+ H+ Sbjct: 178 DLDRDDWRTFRVDRMTEVAARTWRFTPRPAPEDAAAYVQRGVVTGAYPHSVRFLVHAPAA 237 Query: 225 FVPADSP 231 V A P Sbjct: 238 EVRAQVP 244 >UniRef50_A0NRK1 Predicted transcriptional regulator n=2 Tax=Labrenzia RepID=A0NRK1_9RHOB Length = 342 Score = 63.4 bits (153), Expect = 6e-09, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 49/214 (22%) Query: 30 VRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRTA--------------- 69 LA F VS+RT+ RD +RL+ L + G RL + Sbjct: 22 ATVLAERFHVSLRTIYRDI-DRLIALGVPVDAERGAEGGYRLASGYLQPPVALTRNETAA 80 Query: 70 ---------GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA---LLMCDESPCVIAPAN 117 S + D L A + +A L P L+ ++ + P I + Sbjct: 81 LLAAMALVRSSRTVPLADDLAAAEKKLVASL-PKTVHGLLKEADRIVGIEPIPPDIFHSG 139 Query: 118 PVPSPSGALSFWR-----LIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYL 167 P+ W+ + I +RV + + + P ++ + WYL Sbjct: 140 TKAEPT---CDWQKALDGFMAGILDGKRVRFEHVNPARKTVKAHDVEPYGVMFDRDLWYL 196 Query: 168 VAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 + V+ D + ++ FR + + Sbjct: 197 AGRCVDTDTLKVYRADRVRGLEISGLFFRPDKNF 230 >UniRef50_C6CXH2 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillales RepID=C6CXH2_PAESJ Length = 319 Score = 63.4 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 53/247 (21%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD------------------------ 47 A RL I+ L E L+ R+LA VS RT+ RD Sbjct: 3 ADRLLSIMILLQNNEILTTRELAKRLEVSDRTILRDMDALSLSGIPVVADRGKTGGWRLM 62 Query: 48 --FRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM 105 FR L L LE L QM+ D+ + + ++L+ +L Sbjct: 63 DHFRSYLSGLKLEDTKALFILP----AEQMLKDLGVEIKGLDIR-------QKLLASLPD 111 Query: 106 CDESPCVIAPANPVPSP-------SGALSFWRLIQAITGRRRVTLIAEG----RRCERLA 154 +S + + + +A+ R+ + ++ Sbjct: 112 SSKSEALHYMEKVYMDTGTWKPAEEKNNALLTIQKALWEDTRLNMAYRKADGTSSERTVS 171 Query: 155 PCRLLIHQQTWYLVAE-HEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFI 209 P L+ +WYLVA +G++ F + I + +E F R + F Sbjct: 172 PLGLVAKGSSWYLVAMNDDGNLRSFRVSRITKAEATEELFSRPAEFDLAEYWKQSKLDFA 231 Query: 210 QALPHFR 216 +LP F Sbjct: 232 GSLPTFE 238 >UniRef50_UPI0001B564E6 helix-turn-helix type 11 domain-containing protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B564E6 Length = 314 Score = 63.0 bits (152), Expect = 7e-09, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 87/238 (36%), Gaps = 39/238 (16%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER--LMY-LDL 57 MT RR + LA+ L A +S LAA GV+ RT RRD + L Y +D Sbjct: 1 MTTTSRRLETLAL--------LQARPGISATDLAARLGVTERTTRRDIAQLRELGYRIDG 52 Query: 58 E-YQSGYCRLR------------------TAGSEMQMVPDVLIFAHRSGLAGL---FPGL 95 E + G RL + G + + D L A + LA L P Sbjct: 53 EPGRVGGYRLAHGTAMPPLLLDADEVAAVSLGLQTAVAVDGLETATVTALAKLTQVVPTR 112 Query: 96 DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAP 155 + + AL + P R +A+ R R L A + + P Sbjct: 113 WQARLAALASVESLPGKPFRQAARDILVPLALACRAGEAVRIRHR-ALDAPSAKPLDVQP 171 Query: 156 CRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETF---RRNDSLCRLVEDPVF 208 RL+ ++ WYLVA G F +D I +QPL ++ L+ D + Sbjct: 172 YRLVTVRRQWYLVACPRGAADWKTFAVDRIEAVQPLGSKLPAPEPPSTVADLITDARW 229 >UniRef50_Q73PY5 Transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73PY5_TREDE Length = 301 Score = 63.0 bits (152), Expect = 8e-09, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 16/210 (7%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66 + RL I+ L++ + + ++LA +FGVSVRT+ RD +Y G Sbjct: 3 SERLFEIVFILLSRKQTTAQELAKKFGVSVRTIYRDMDILSSAGIPVYTMQGTGGGIFID 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL-----LMCDESPCVIAPANPVPS 121 + ++ L L P + + L + + + + + Sbjct: 63 ESYTINKSILTKGEQEKILLALQCLSPIDEIHTESILNRLSAIFQKNADWIRIDYSRWDN 122 Query: 122 PSGALSFWRLIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWY--LVAEHEGHI 175 + F L AI RR V L + + P RLL + WY + Sbjct: 123 KNDHHLFKTLKDAILERRAVKLEYLSSYGEKTERTVYPLRLLYKSKAWYAECYCTEKNAC 182 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 +F L I I +TF R D L ++ +D Sbjct: 183 RLFRLTRILSIIKTLKTFNRADLLGKIPDD 212 >UniRef50_A1ALA5 Helix-turn-helix, type 11 domain protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ALA5_PELPD Length = 336 Score = 62.6 bits (151), Expect = 9e-09, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 79/224 (35%), Gaps = 33/224 (14%) Query: 3 QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF---RERLMYLDLEY 59 + R++ + A RL II L +++ LAAE GV RT++RD E L E+ Sbjct: 5 KPARKYSQ-AGRLHSIIRLLETRRGMTLDDLAAECGVDRRTIQRDLAAVEEAGYTLTTEW 63 Query: 60 QSGYCRLRTAGSEMQMVPDVLIFAHRSGL------------AGLFPGLDRRL--VNALLM 105 Q G + P L L L LD + +LL Sbjct: 64 QEGRKVFSFLTRSRAIPPISLTLNQLMSLYLLRSLGVHLAGTPLLAELDDLFRTIRSLLP 123 Query: 106 CDESP--------CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCER 152 + + P + A F L +A+ + R+ L+ + Sbjct: 124 DRYAAHLERIARVSLPRLHGPRDYAAAAPHFGGLQRALLQQYRMRLVYAKNGAGESQAYE 183 Query: 153 LAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFR 194 L P L+ H+ YL+ + +F L+ I ++ ++ F Sbjct: 184 LDPYTLVFHKAGIYLLGYAHNRKGMRLFALERIRGLEVSRQRFE 227 >UniRef50_A9E8Y8 Helix-turn-helix, type 11 n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9E8Y8_9RHOB Length = 220 Score = 62.6 bits (151), Expect = 9e-09, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 19/199 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDL--EYQSGYCRLRTAG 70 RL +I RL G+ LA FGVS RT+ RD + L + GY Sbjct: 9 RLVALIDRLRNGQVHRAEDLARRFGVSTRTIYRDMDKLSASGLPVAGTRGEGYRITPAIT 68 Query: 71 SEMQMVPDVLIFAHRSGLAGLF----PGLDR-------RLVNALLMCDESPCVIAPANPV 119 + + A GLA P L + L + Sbjct: 69 LPPLTLTPAELEALNLGLAVAAEVGDPALQDAAETLAAKFDAVLPTETIAEGAAWSQALR 128 Query: 120 P---SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEG--H 174 + L A+ R+++ + + + P ++ + W L A EG Sbjct: 129 SQGKATRVFAHLPVLRAAVQARQKLRIGVADSGSQVVRPLKVENWGRFWVLTAWCEGTER 188 Query: 175 IAVFTLDEIHLIQPLQETF 193 +A F LD I + L E F Sbjct: 189 LATFRLDLIESAEALPELF 207 >UniRef50_A4SCA5 Putative uncharacterized protein n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SCA5_PROVI Length = 364 Score = 62.6 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 31/227 (13%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR-ERL-MYLDLE 58 M Q + RL LI ++L + + + L+A ++ +T++RD R + ++ Sbjct: 1 MPQKRSVFE----RLQLIDAKLRSKSYPNCQTLSASLDMTPKTVQRDLNYMRFELSAPIK 56 Query: 59 YQS---GYCRLRTAG---SEMQMVPDVLIF-AHRSGLAGL--------FPGLDRRLVNAL 103 Y S G+ + D A +S L G ++++ L Sbjct: 57 YDSRRRGFYYESDWTFFPNGYFNEQDTRSLLAAKSTLERYRGEPYYKEICGALDKVLSNL 116 Query: 104 LMCDESPCVIAPANPVPSPSG---ALSFWRLIQAITGRRRVTLIA-----EGRRCERLAP 155 ++ + +P G F L +AI GR +V L P Sbjct: 117 KGSHSGQHLLDVYSFARTPRGMPSRDCFENLERAIRGRLKVRFGYVSLRTGKASERLLDP 176 Query: 156 CRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200 RL + + WYL+A E + F L I ++ +E +R + Sbjct: 177 YRLHLAEDGWYLIAIGEPNKGPRSFLLQNIRNLEVTREAYRVDPEFN 223 >UniRef50_A5I226 DeoR-family transcriptional regulator n=13 Tax=Clostridium RepID=A5I226_CLOBH Length = 314 Score = 62.6 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 36/211 (17%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQ----SGYCRLRT 68 RL I+ L+ E +S +LA +F VSVRT+ RD L + + Q G+ + Sbjct: 5 RLLAIVVMLLNREKISASELAEKFEVSVRTIYRDIEAINLAGIPIVSQIGNNGGFYIID- 63 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCVIAPAN 117 ++ +L + +++ L V ++ ++ Sbjct: 64 ---NYKINHQLLTLEDMISIIEALKNMNKFLDNKNVEMAIEKVKNIVPKEKKEVFDLHFE 120 Query: 118 PVPSPSGALSF---------WRLIQ-AITGRRRVTLIAEGRR----CERLAPCRLLIHQQ 163 + + F +++I A+ + + + + P L+ Sbjct: 121 QMCIDTLPWGFKKCEEENLKYKIIYDAVDNKNCIAFDYRNSKGEYNWREIEPLTLVFKGF 180 Query: 164 TWYLVAEHEGH--IAVFTLDEIHLIQPLQET 192 +WYL + + +F L + + E Sbjct: 181 SWYLFSFCKLKNDYRLFKLSRMENLTVPHEK 211 >UniRef50_UPI0001788CE6 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788CE6 Length = 297 Score = 62.6 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 35/207 (16%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY---LDL----------EYQ 60 RL I L+ + ++ LAA + VSVRT+ RD L+ + + E Sbjct: 5 RLLGITMELLTKKRVTATALAARYEVSVRTIYRDVD--LINQAGIPIASYPGADGGFELM 62 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRS-GLAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119 SG+ + V D L H G+ G G ++N L P ++ Sbjct: 63 SGFYL----TRQHFSVDDFLAIYHLLKGIEGTVKGRYTAIMNKL--GTLQPALLNGGCHE 116 Query: 120 P---SPSGALSF----WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLV 168 S + ++++AI +TL R ++ P +L Q WYL Sbjct: 117 QIIVEMSTSEHERTWVRQMLKAIESSNLITLHYTSASGSRSERQVEPLQLYWEQGVWYLE 176 Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETF 193 A + +F + I ++ + TF Sbjct: 177 AYCLLQQSKRIFRVSRITGLEISENTF 203 >UniRef50_Q73PA8 Transcriptional regulator, putative n=2 Tax=Bacteria RepID=Q73PA8_TREDE Length = 306 Score = 62.6 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 24/217 (11%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSGYC----R 65 R+ II L+ E +S + LA F VSVRT++RD E + + G Sbjct: 4 ERILEIIIYLLNHEKVSAKYLAEYFDVSVRTIQRDMVSIAE--AGIPVYTLGGRYGGYAV 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM--------CDESPCVIAPAN 117 L + + + S L L +N+L+ + Sbjct: 62 LENYKIKNINIKNSEQQIIISALESLATSYTNDKLNSLIEKYNAIIEKEGGQKVFWDFSV 121 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCER----LAPCRLLIHQQTWYLVAE--H 171 + S L +AI G+ + + P + WYL A Sbjct: 122 TKENKKVQDSNMLLEKAIGGKNYIVFDYRNSEGKSSHVCAEPLAIHYKWYAWYLFAYPKE 181 Query: 172 EGHIAVFTLDEIHLIQPL-QETFRRNDSLCRLVEDPV 207 F + + + + +F ++ + + +++ Sbjct: 182 TKEYRTFKVARMQNLVISKERSFIKHGDIQQKMKEAE 218 >UniRef50_C0C4Y8 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4Y8_9CLOT Length = 309 Score = 62.2 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 65/221 (29%), Gaps = 18/221 (8%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGY 63 + R D + RL I+ L+ ++ LA VSVRT+ RD + + Q G Sbjct: 6 KERTDMKSSRLFQILYLLMERRDVTAGMLAERLEVSVRTIYRDLDALSAAGIPVYAQKGQ 65 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-------RRLVNALLMCDESPCVIAPA 116 E +M +L + + LD L+ + V Sbjct: 66 GGGIRLMEEFKMDRSLLSGEQQEQILTALQSLDSVGAIEGSSLLTQMSGLFGKKAVGWLE 125 Query: 117 NPVPS----PSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLV 168 S F +AI R ++ + P +L WY+ Sbjct: 126 VDFGSWGAMKKEKEYFEICREAILHCRLLSFEYFNSSGGWCERTVEPLKLCFKGGNWYVS 185 Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207 +F L I + ETF +PV Sbjct: 186 GYCRRRRGFRLFRLSRILKLCIEDETFTPKVYKEGERPEPV 226 >UniRef50_B8DYL9 Putative uncharacterized protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DYL9_DICTD Length = 339 Score = 62.2 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 40/240 (16%) Query: 1 MTQAERRHDRLAVR--LSLI-----ISRLVAGETLS--VRKLAAEFG-VSVRTLRRDFRE 50 M++ + +LA R L I + + +L RK++ EFG SVRT++RD + Sbjct: 1 MSKTVSSNRKLAFRKMLPRIYRIFSLIKENKYISLDEITRKISYEFGETSVRTIKRDIKT 60 Query: 51 -RLMY-LDLEY---QSGYCRLRTAGSEM-----------QMVPDVLIFAHRSGLAGLFPG 94 R + + + Y GY + + ++L + F Sbjct: 61 LRDDFKMPIAYSKANGGYYLFSKSEFPFPKLTEGEVLSLLITANMLHQFKGTDFEEDFER 120 Query: 95 LDRRLVNALLMCDESPC-------VIAPANPVPSPSGALSFWRLIQAITGRRRV-----T 142 L +L L + P I P F ++++AI R+ + + Sbjct: 121 LKNKLELFLRDNNVIPSDSIESALSIPFTFIKPKVDIRDKFVKILKAIRERKSIIIEYHS 180 Query: 143 LIAEGRRCERLAPCRLLIHQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 ++ ++ P L + WY I F LD I I+ E FR+ Sbjct: 181 FSSDKITERKVDPYHLYNFEGVWYFCGYCHLRKEIRDFALDRIKNIRETYEEFRKPRDFN 240 >UniRef50_C7PEN6 Helix-turn-helix type 11 domain protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEN6_CHIPD Length = 318 Score = 62.2 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 37/220 (16%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSGYCRLRTAG 70 RLS I+ +L + + ++A F +S+RT+ RD +E + + E +GY + Sbjct: 6 RLSAILIQLQGKKIVKAAEIAERFNISLRTVYRDVRALQEAGVPVGAEAGTGYYLVEGYH 65 Query: 71 SEMQMVPDVLIFAHRSG----------------------LAGLFPGLDRRLVNALLMCDE 108 M A +G + + G ++ + +L Sbjct: 66 LPPVMFSREEAAALLTGEKLMANLSDHSNRKEFSNAMQKIKAVLRGSEKDFLESLEDNI- 124 Query: 109 SPCVIAPANPV--PSPSGALSFWRLI---QAITGRRRVTLIAEGRRCERLAPCRLLIHQQ 163 V++ PV P+ LS + Q I L E + P ++ Sbjct: 125 --AVVSRRPPVGEEFPNRFLSDIQHSLGKQLILQLDYFALHNETHTKRDVEPIGIIFMNG 182 Query: 164 TWYLVA---EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 W+L+A G+ F +D I + + + + + Sbjct: 183 YWHLIAWCRLRHGY-RDFRMDRIKNVGVSADNYDKQRHIT 221 >UniRef50_D2BDS4 DeoR family transcriptional regulator n=2 Tax=Actinomycetales RepID=D2BDS4_STRRD Length = 332 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 46/253 (18%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRL- 66 R+ ++ L + + +LA GV+ RT+RRD ERL L + G +L Sbjct: 13 ERVLTLLGLLQQRQVWTGPELADRLGVTPRTVRRDV-ERLRTLGYPVHASQGVGGGYQLG 71 Query: 67 RTAGSEMQMVPDVLIFA----------------------HRSGLAGLFPGLDRRLVNALL 104 ++ D A + L + P R V AL Sbjct: 72 PGQDLPPLLLDDEEAIATVVSLLAGAGGAVTGAGDAALRALTKLDRVLPTRLRHEVRALS 131 Query: 105 MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIH 161 ES +P L + R+ P RL+ Sbjct: 132 GSVES------FGGGRTPVDPEVLMTLARVCRDEVEAGFGYPSGSEVRRRRVEPYRLVAS 185 Query: 162 QQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCR--LVEDPVFIQALPHFRF 217 ++ WYL+A F +D + + F + V++ V + PH Sbjct: 186 ERRWYLLAYDLDRDDWRSFRVDRMTDVSARTWRFSPRAAPDAAPYVQEGVASRVYPH--- 242 Query: 218 IQHSLLTFVPADS 230 Q L PAD+ Sbjct: 243 -QARFLVHAPADT 254 >UniRef50_C0CXX2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXX2_9CLOT Length = 304 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 59/197 (29%), Gaps = 16/197 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCRLRTA 69 RL I L+ + S +LA +F VSVRT++RD + G + Sbjct: 5 RLYGITVYLLNHKKASASELARKFEVSVRTVQRDIDALCQAGIPVAAESGAKGGYSIPDT 64 Query: 70 ---GSEMQMVPDV-LIFAHRSGLAGLFPGLDRRLVNALLMCDESP--CVIAPANPVPSPS 123 S+ D LIF G + P + P I V Sbjct: 65 FRMDSQAITQEDYGLIFTALKGFSSAMPSPNIASALEKFTALSKPDNERIILDFSVLREG 124 Query: 124 GALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHI--AV 177 G +L AI + V R + P L+ WYL+A Sbjct: 125 GETLIKQLQTAIRRKCCVRFTYTNADNMTRVHTVEPVALVYRWYAWYLLAYSTVREDYRT 184 Query: 178 FTLDEIHLIQPLQETFR 194 + L + + F Sbjct: 185 YKLVRMEQAEITGLPFT 201 >UniRef50_B1C2N9 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2N9_9FIRM Length = 306 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 17/199 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR-----ERLMYLDLEYQSGY----- 63 RL II L+ + +LA + VSVRT+ RD +Y+ G Sbjct: 14 RLFRIIYHLMENGKSTAPELAEKLEVSVRTVYRDIDIISSAGVPIYVTTGRNGGIQIADS 73 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS-P 122 L + D++ + ++A+ + + + Sbjct: 74 FVLDRLLLSDKEKEDIITALRSVSIVDDHNRDTLSKLSAIFNTKSENWLEVDFSRWGNKS 133 Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRRCERLA----PCRLLIHQQTWYLVAEHEGH--IA 176 F ++ +AI + + ++ R E + P +++ ++WY+ A Sbjct: 134 QDNTMFQKIKEAIISHKMLCIVYANTRGEVIERVICPLKMVYKAKSWYIKAFCMNKSDFR 193 Query: 177 VFTLDEIHLIQPLQETFRR 195 +F L I + +++ F Sbjct: 194 IFKLTRIIQARNMEKNFSP 212 >UniRef50_C8PRK5 HTH domain protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PRK5_9SPIO Length = 332 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 26/209 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQ---SGYC 64 + RL+ I +R+ A +LA E SV T+ RD R+R +EY G+ Sbjct: 13 MLERLTYIHNRIKAEYFPKTSELAKELECSVPTISRDIMFLRDRF-NAPIEYNAQKKGFY 71 Query: 65 RLRTAGSEMQMV--PDVLIF-AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS 121 +Q + DV A ++ L + + + P + Sbjct: 72 YSEKYEMPIQNISQKDVTALVAAKTLLQQYQGTPIYKELVDAIDVITFPQRQGTGAFIDR 131 Query: 122 PS---------GALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYL 167 + F L QA+ R + G+ R+ P +LL ++L Sbjct: 132 IAVPPMPYAIIDEAVFTALYQAMIQNRTIEFDYCGVLDSGKVHRRVRPYQLLFDDGRYFL 191 Query: 168 VAEHEGHI--AVFTLDEIHLIQPLQETFR 194 E +F + I + E F Sbjct: 192 FGYAEERQAERLFYIPRIEHLCITDELFT 220 >UniRef50_A3I1Q3 Putative deoR-family transcriptional regulator n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1Q3_9SPHI Length = 319 Score = 61.5 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 35/212 (16%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-------YCR 65 RL+ I++ L + T+ +LA FGVS+RT+ RD R + + ++G R Sbjct: 6 RLTAILTHLQSKRTIRAIELANRFGVSLRTIYRDVRALEETGVPIIGEAGQGYSLVEGYR 65 Query: 66 LRTA---------------GSEMQMVPDVLIFAHRS--GLAGLFPGLDRRLVNALLMCDE 108 L E M + F + + + ++ L+ + + Sbjct: 66 LPPVMFTKQEALAFIVAEKLLEKSMDEESNRFFKEALYKVKAILKSEEKDLLGRVDDKIQ 125 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRV-----TLIAEGRRCERLAPCRLLIHQQ 163 V N + +F +++AI+ RR + T + L P + Sbjct: 126 ---VFKRENHQSQFKRSKNFQLVLEAISERRVLQGHYTTFEPKKTTERILEPIGIYYSYS 182 Query: 164 TWYLVAEHEGH--IAVFTLDEIHLIQPLQETF 193 WYL+A F +D I L +F Sbjct: 183 NWYLIAYCRLRKDYRTFRIDRFDKIHVLDGSF 214 >UniRef50_UPI0001BC5E8A helix-turn-helix, type 11 domain-containing protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC5E8A Length = 303 Score = 61.5 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 20/203 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL ++ L+ + ++ ++LA F VSVRT+ RD +Y G + Sbjct: 5 RLFEMLYILINRKHITAKELALHFEVSVRTIYRDIDILCSSGIPVYTSQGSGGGIFIEKN 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGL----DRRLVNALLMCDESPCVIAPANPVPSPSG 124 + D + L + P L + +L++ L + + Sbjct: 65 YVLNNSVFTDEEQEKIITSLQSI-PSLNATDNSKLISKLSGLFKKNYLNWIEIDFSRWGD 123 Query: 125 ALSFWR----LIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174 + + + +I G ++ ++ P +L +WYL Sbjct: 124 SDHDNQNYILIKNSIIGHTIISFAYISSYGEVTLRKICPVKLFFKSSSWYLQGFCLDKKD 183 Query: 175 IAVFTLDEIHLIQPLQETFRRND 197 F + + ++ E F N+ Sbjct: 184 YRTFKISRMSSLKASPEIFNINE 206 >UniRef50_C5BVH8 Helix-turn-helix type 11 domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BVH8_BEUC1 Length = 325 Score = 61.5 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 72/218 (33%), Gaps = 33/218 (15%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRL 66 A R+ +++ L S +LA VS RT+R D ERL LD + ++G+ RL Sbjct: 5 AARMLDLLALLQMRPGWSGSELAQRLSVSTRTIRADI-ERLRRLDYPVEGVRGRAGHYRL 63 Query: 67 RTAG-SEMQMVPDVLIFAHRSGLAG--------------------LFPGLDRRLVNALLM 105 ++ D A GL + P RR V+AL Sbjct: 64 GVGAKLPPLLLDDDEAVAVAIGLRAATGLSGVEESTARALAKLEQVMPHQVRRKVHALAT 123 Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIH 161 V +N A + AI + + P RL+ Sbjct: 124 ATSQGPVNTDSNVADPVVDAGVLSSIAAAIRDLEWLRFSYRDDAADAPPRAVEPYRLVSW 183 Query: 162 QQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRND 197 Q+ WYLVA A F +D + L F + Sbjct: 184 QRRWYLVARDTTSTAWATFRVDWMDLRMRTGRHFVPSP 221 >UniRef50_D1B1L2 Transcriptional regulator protein-like protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1L2_SULD5 Length = 304 Score = 61.5 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 16/203 (7%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL---DLEYQSGYCRLRT- 68 R I +++ GE L ++A G + +T+ RDF + + L +EY + Sbjct: 8 ERYEYIFTKIRRGEELHPVEIAEYLGCNRKTITRDFEKIISVLFESPIEYNGNKWIVPKP 67 Query: 69 -AGSEMQMVPDVLIFAHRS----GLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS-- 121 +++ A L L S V N + Sbjct: 68 IIDIRAYTASNLVSIALLLKKAYHEDPYLYDKSIELF-DFLQEKVSHSV-YKQNSIEELF 125 Query: 122 PSGALSFWRLIQAITGRRRVTLI-AEGRRCERLAPCRLLIHQQTWYLVAEHEGHIA--VF 178 PS F+ + AI + + + + P ++ +Q WYL + ++ Sbjct: 126 PSCKDEFYLIKNAIEKTQEIKFSFHYDDNVKHVQPLKITNLEQYWYLFCYDLEQSSFWIY 185 Query: 179 TLDEIHLIQPLQETFRRNDSLCR 201 I I+ L + F ++ L R Sbjct: 186 HFKGIKNIKVLDQIFNLDEHLYR 208 >UniRef50_C7Q8N4 Helix-turn-helix type 11 domain protein n=12 Tax=Bacteria RepID=C7Q8N4_CATAD Length = 328 Score = 61.5 bits (148), Expect = 2e-08, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 30/219 (13%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLM--YLDLEYQSGYCRL 66 A RL ++ L ++ +LA E VSVRT+ RD E + Y D GY L Sbjct: 3 ASRLVSLLLLLQTRGRMTAHQLAEELEVSVRTIYRDVESLHEAGIPLYGDAGPAGGYQLL 62 Query: 67 RTAGSEMQMVPDVLIFAHRS----------GLAGLFPGLDRRLVNALLMCDESPC----- 111 + + + A GL + ++ AL Sbjct: 63 AGYRTRLTGLSANEAEAMFLAALPGPAAELGLGSVMAAAQLKVKAALPPELADRSGRIQE 122 Query: 112 -VIAPANPVPSPSGALSFWRLI-QAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQT 164 + A F + +A+ +RR+ ++ LAP +++ Sbjct: 123 RFLLDAPGWYDDGDTSPFLPAVAEAVWNQRRIRVLYRRWTEPTEVERTLAPYGIVLKTGK 182 Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQET---FRRNDSLC 200 WY VAE G + +++I + L++ F R + Sbjct: 183 WYTVAESAGRTNTYRVNQILELTALEDDDSCFERPEDFD 221 >UniRef50_D2PRW1 Helix-turn-helix type 11 domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PRW1_9ACTO Length = 312 Score = 61.1 bits (147), Expect = 3e-08, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 91/247 (36%), Gaps = 44/247 (17%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER--LMY-LDL 57 M+ A RR + LA +L + +S LA GV+ RT+RRD + L Y +D Sbjct: 1 MSTAGRRLETLA--------QLQSHPGISAPGLAERLGVTERTVRRDIAQLRELGYRIDG 52 Query: 58 E-YQSGYCRLRTAGSEMQMVPDVLIFAHRS-------GLAGL--------------FPGL 95 E ++G RL + ++ D A + G+ GL P Sbjct: 53 EAGRTGGYRLAHGRAMPPLLLDADEVAAVALSLRTAVGVDGLETAAVTALAKLTQVVPSR 112 Query: 96 DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAP 155 + + AL P + R +A+ R R + + + + P Sbjct: 113 WQARLTALTEVQALPGQSSRRAGRDVLVPIALACRAGEAVRIRHR-SAGSGETKPIEVQP 171 Query: 156 CRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETF---RRNDSLCRLVEDPVFIQ 210 RL+ ++ WYLV G V+ +D I +QPL F +LV Q Sbjct: 172 HRLVTLRRLWYLVGCPRGTEDWRVYAVDRIEQVQPLGTRFPAPEPPGDAAQLVA-----Q 226 Query: 211 ALPHFRF 217 L H R+ Sbjct: 227 TLAHGRW 233 >UniRef50_C2G2T1 Helix-turn-helix, type 11 domain protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2G2T1_9SPHI Length = 331 Score = 61.1 bits (147), Expect = 3e-08, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 75/208 (36%), Gaps = 28/208 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSG-------YCR 65 R I+ +L + + ++LA F VS+RT+ RD R + + ++G R Sbjct: 11 RTVAILIQLQSKRVVRAQELADRFNVSLRTIYRDIRTLEASGVPIFGEAGTGYSLMEGYR 70 Query: 66 LRT------AGSEMQMVPDVLIFAHRSGLAGLFP-------GLDRRLVNALLMCDESPCV 112 L + ++ G+ F + + + LL ES + Sbjct: 71 LPPIMFTREEATSFVAAEKLMQQYVDQGIQEHFSSAIIKIKAVLKSMEKDLLSSLESQVL 130 Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCER-----LAPCRLLIHQQTWYL 167 I + + + L ++I+ +++V + + E + P + + WY+ Sbjct: 131 IQSNSKNLNKLVPNALSVLFESISRKKKVRMHYQTIESEHPETRVIEPVGIFHENKFWYM 190 Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETF 193 +A F D I + L++ F Sbjct: 191 IAYCYLRKAYRQFRTDRIQRLDVLEDAF 218 >UniRef50_A4FQS7 DeoR-family transcriptional regulator n=3 Tax=Actinomycetales RepID=A4FQS7_SACEN Length = 326 Score = 60.7 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 31/196 (15%) Query: 32 KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMVPDV------- 79 +LA GV+ RT+RRD ERL LD +G RL + ++ D Sbjct: 31 ELADRLGVTDRTVRRDV-ERLRELDYPVRSTTGTAGGYRLVSGRDLPPLLLDDDEAVAVA 89 Query: 80 --LIFAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAI 135 L A G+AG+ R L + +L P + A + R+ A+ Sbjct: 90 IGLATADNRGVAGIEESSMRALAKLEQVLPARLRPRLAAVTGATAAAPHRHPTPRVDPAV 149 Query: 136 --------TGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLD 181 R ++ GR R+ P L+ Q WYL+A F +D Sbjct: 150 LAVLAACCRDREILSFDYRGRGGEPSARRVEPHHLVTVQGFWYLLAHDPDRADWRTFRVD 209 Query: 182 EIHLIQPLQETFRRND 197 I P + + Sbjct: 210 RIERPSPTRRHHEPRE 225 >UniRef50_Q15PY3 Helix-turn-helix, type 11 n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PY3_PSEA6 Length = 238 Score = 60.7 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 29/228 (12%) Query: 10 RLAVRLSLIISRLV-AGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQS--GYCR 65 R A RL+ I+ L + ++ + LA VS RT+ RD ++ + + + ++ GY Sbjct: 2 RKAERLNDIVHHLRRMHQAVTAQTLAETLEVSHRTIYRDIQDLIDSGVPILGEAGVGYVI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGL-------AGLFPGLDRRLVNALLMCDESPCV------ 112 + M + A G+ F + + +P + Sbjct: 62 DKKYHLPPIMFDADELEAIALGIGMVSNWTDEKFAEKAQSAYRKIQATLPAPLINELHQI 121 Query: 113 -IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167 A ++F + + I + V+ + + + P L+ W L Sbjct: 122 STFSAPSRYKIPWQVNFTEVRECIRRKHLVSFTYTDLSDQQSQRTIRPLALISFSPIWLL 181 Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRNDS-----LCRLVEDPVF 208 E G F LD I L ++ ++V+D Sbjct: 182 AGWCELRGAYRNFRLDRISEFTKLNTRYQDEKDKSLATYLKMVKDEEN 229 >UniRef50_A0RAF1 Putative uncharacterized protein n=10 Tax=Bacillaceae RepID=A0RAF1_BACAH Length = 327 Score = 60.7 bits (146), Expect = 4e-08, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 33/239 (13%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M ++ +RL + RL G L ++ FGV +T++RD E +YL++ Sbjct: 1 MVWDLNEREKKTIRLLSLYDRLCKGNVLLKKEEIDNFGVHPKTIKRDLEEIELYLEMNSG 60 Query: 61 S----------GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP 110 + L + ++L F + + +M +P Sbjct: 61 NSLQLEQDIKKQQVHLSRSSDLWLSKEEILSLGKVLLETRAFSKDEMNTLLDKIMNQSAP 120 Query: 111 --------CVIAPANPVPSPSGALSFWRLI----QAITGRRRVTLIAE-----GRRCERL 153 + S ++I +A+ ++ + + + ++ Sbjct: 121 KDRDFIKDVMRNERYHYEPLQHQRSLQQMIWDISEAVRTKKVLEIEYKKETAAEGTKRQV 180 Query: 154 APCRLLIHQQTWYLVA----EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVF 208 P +L + +YL A ++ +D I + +E F+ N E+ F Sbjct: 181 KPVGILFSEYYFYLAAFPIEYDFEFPTIYRMDRITNYEMQEERFKVN--YTERFEEGEF 237 >UniRef50_D2B9H3 DeoR family transcriptional regulator n=3 Tax=Actinomycetales RepID=D2B9H3_STRRD Length = 360 Score = 60.7 bits (146), Expect = 4e-08, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 62/194 (31%), Gaps = 29/194 (14%) Query: 32 KLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRTAGSEMQMVPDVLIF---- 82 +LA GVS RTLRRD +RL L G +L + ++ D Sbjct: 25 ELADRLGVSERTLRRDV-DRLRELGYPVSAARGTDGGYQLASGAVLPPLLLDDEEAVALA 83 Query: 83 -----AHRSGLAGLFPGLDRRL---VNALLMCDESPCVIAPANPVP-----SPSGALSFW 129 A +SG+AG+ R L V L + A + A Sbjct: 84 VGIGDAAQSGIAGMQEASLRALTKVVRVLPPRLRARVDALRAMTLSVAASGPVVAAGVLT 143 Query: 130 RLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEI 183 + QA + R+ R + P R++ WYLVA F LD + Sbjct: 144 VVAQACRDQERLRFGYTARGAASTDREVEPYRVVALGGRWYLVAYDLTRHDWRSFRLDRL 203 Query: 184 HLIQPLQETFRRND 197 FR Sbjct: 204 IEPAATGTRFRPRP 217 >UniRef50_C3WQ96 Transcriptional regulator n=3 Tax=Fusobacterium RepID=C3WQ96_9FUSO Length = 311 Score = 60.3 bits (145), Expect = 5e-08, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 81/219 (36%), Gaps = 25/219 (11%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCR 65 + A RL+ + L + ++ ++ L EF +S RT RD ++ L + ++G + Sbjct: 2 KRAERLNQELIFLSSKKSFNLSDLINEFNISKRTALRDIQDLELMGLAFYVENGRNGGYK 61 Query: 66 LRTAGSEMQMVPDVL----IFAHRSGLAGL--------FPGLDRRLVNALLMCDESPCV- 112 L + M D+ IF L L +P L ++L+ L + + + Sbjct: 62 LINEKLLIPMHFDIREITSIFFALKSLEALSTTPFEKSYPLLYKKLLATLPIEQKEKILK 121 Query: 113 ---IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA--EGRRCERLAPCRLLIHQQTWYL 167 + + +P + +++AI + + ++ + +++ P L W+ Sbjct: 122 LLKVVEYHNIPPINPTNYLTVILEAILDLKVLNILYTQHNKISKQILPYNLFYRNGVWFC 181 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQ-ETFRRNDSLCRLV 203 A V+ D I E F + L + Sbjct: 182 YALDINNNIFGVYRCDYIKECTINDIEHFYTFEDLKNFL 220 >UniRef50_A0R9T5 Transcriptional regulator, DeoR family n=74 Tax=Bacillaceae RepID=A0R9T5_BACAH Length = 322 Score = 60.3 bits (145), Expect = 5e-08, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 41/214 (19%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRR---DFRERLMYLDL---EYQSGYCR 65 A RL I+ A +T + +++A EF +SVRT+ R D + M L + + ++G Sbjct: 13 AKRLLDILIFASAKKTFTAQEIADEFNISVRTVHRYIVDLSD--MGLPIYAEQGRNGGY- 69 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP---------A 116 +++P +L F ++ F L E VI Sbjct: 70 ---KVLTNRVIPPIL-FTEEEAVSIFFAFQSLSYYRDLPFNTEINSVIHKLYSSLQHDAK 125 Query: 117 NPVPSPSGALSFWR-------------LIQAITGRRRVTLIAEGR---RCERLAPCRLLI 160 V ++FW L AI + + E + + + + P + Sbjct: 126 TKVEKIRSYIAFWNPKRTIDTPHLNEVLTAAIENKN-LHFQYESKSGIKTKHVHPIGVYA 184 Query: 161 HQQTWYLVAEHEGHIAV--FTLDEIHLIQPLQET 192 H WYL + V + +D I I +E Sbjct: 185 HDGLWYLPSYDFSRKKVLLYRVDRILSILSTEEN 218 >UniRef50_D1C4L3 Helix-turn-helix type 11 domain protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4L3_SPHTD Length = 354 Score = 59.9 bits (144), Expect = 6e-08, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 81/217 (37%), Gaps = 30/217 (13%) Query: 12 AVRLSLIISRLVAG-ETLSVRKLAAEFGVSVRTLRRDFR--ERLMYLDLEYQ--SGYC-- 64 A R+ IIS++ A + R LA + +S R + +D + + L+LE Q GY Sbjct: 20 ASRILEIISKISAAPNQWTRRSLAEHYEISERQITKDLQVIRHGLRLELERQPSGGYYFK 79 Query: 65 ---RLRTAGSEMQMVPDVLIFAH----RSGL--AGLFPGLDRRLVNALLMCDESPCVIAP 115 RL + + + A +G+ L + R + +++ + P + Sbjct: 80 TLPRLPAVSYSLAEALAIFLAAQAGRRLAGIPHEELSAAIAR--LRSIMPRELQPLLQDD 137 Query: 116 ANPVPSPSGALS----FWRLIQAITGRRRVTLIAE------GRRCERLAPCRLLIHQQTW 165 VP L +AI R+ V L+ R R+ P ++ + Q+W Sbjct: 138 GAAVPPVPRNRHRERILEVLTRAIAARKSVDLVYHPASRPGERTQRRVDPYAVVPNAQSW 197 Query: 166 YLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200 +L+ + +F +D + + F + Sbjct: 198 HLIGWCHLRCAVRIFKVDRVEDVTVTDIRFTPDPEFD 234 >UniRef50_C6PB22 Putative uncharacterized protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PB22_CLOTS Length = 334 Score = 59.6 bits (143), Expect = 8e-08, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 45/223 (20%) Query: 18 IISRLVAGETLSV--RKLAAEFG--VSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEM 73 I+S G T+S ++LA FG VS +T++RD + M + Y+ G R T E Sbjct: 19 ILSWENKGMTISQIYQRLAKNFGEEVSTKTIKRDLDDLTMIFPI-YEEGEGRGTTYTLEK 77 Query: 74 QMVPDVLIFAHRSGLAGLFPGLDRR----------------------------LVNALLM 105 + D + LF R + N + Sbjct: 78 YKIHDF-----IFSIQELFALFFTREIIRKYDTSEIGKMALNFLERIISYIPSIYNDYID 132 Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRV-----TLIAEGRRCERLAPCRLLI 160 +I + + AI R+ + + ++ + P + Sbjct: 133 RLYRTFLIQKDIDSDKNVTVETLKTINDAIIYRKSIKMRYYSFTSDTETEREVDPYLIYE 192 Query: 161 HQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201 + +YL I F + I I+ L ++F + + + Sbjct: 193 KEGHYYLTGFCKLHNEIRDFRISRIKKIKLLDKSFEISPNFDK 235 >UniRef50_C4RGC2 Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RGC2_9ACTO Length = 323 Score = 59.6 bits (143), Expect = 9e-08, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRR---DFRERLMYLDLEY-QSGYCRLRTA 69 R+ ++ L + L +LA G VRT+RR RE + ++ E + G RL Sbjct: 7 RVLTLLELLQSHTRLPGSELADRLGTDVRTVRRYAAHLRELGIPVEAERGRHGGYRLARG 66 Query: 70 GS--EMQMVPDV-------LIFAHRSGLAGLFPGLDRRL----------VNALLMCDESP 110 + + D L+ A R G++ P L + L Sbjct: 67 YRMPPLVLTNDEALAVVVGLLAAERLGMSMTTPANSGALAKIERVLPHSLREPLAAMRET 126 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166 L QA R V + + + L P ++ H+ WY Sbjct: 127 LSFTTNAVTAQAPETSVLLALAQASRARTTVGISYLSWHQDQTERDLDPYGVVFHRGRWY 186 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214 V + F +D I + +TF D + + +P+ Sbjct: 187 AVGRDHRHDSLRTFRIDRIASVTTRTQTFTAPDDFDPVTHLTSALAQVPY 236 >UniRef50_C8XGJ6 Helix-turn-helix type 11 domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGJ6_NAKMY Length = 333 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 70/209 (33%), Gaps = 34/209 (16%) Query: 29 SVRKLAAEFGVSVRTLRRDFRERLMYL--DLEYQSGYCRLRTAGSEMQMVPDVL----IF 82 + +LA F V RT+RR +RL L +E + G + +M P +L Sbjct: 21 TATELAERFDVDERTIRRTV-DRLRDLGIPIEARPGRYGGYRIAAGWRMPPLMLDENETV 79 Query: 83 AHRSGL-----AGLFPGLDRRLVNALLMCDESPCV---------------IAPANPVPSP 122 A +GL +G P A + + + + Sbjct: 80 AVLAGLLAVPGSGTVPTGHTATATATAIAKIRRSLPARLAARADALLAAAVVGSPDAAPA 139 Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEH--EGHIA 176 + A+ RR +TL L P L+ H+ WYLV Sbjct: 140 TDPEILLTAADAVRMRRPLTLDYRSGEDVLTRRTLQPHDLVAHRGRWYLVGLDSSSRQRR 199 Query: 177 VFTLDEIHLIQPLQETFRRNDSLCRLVED 205 F LD + ++PL TF + R +ED Sbjct: 200 TFRLDRVRALRPLSGTF-PAPAEHRPLED 227 >UniRef50_C0ZIU8 Putative uncharacterized protein n=2 Tax=Bacillales RepID=C0ZIU8_BREBN Length = 321 Score = 59.2 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 75/216 (34%), Gaps = 35/216 (16%) Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM----YLDLEYQSGYCRLRTAGSEM 73 I+ L G+ ++ ++LA +++RT+ R + +G L +E Sbjct: 10 ILWLLKTGKRMTAKQLAEILEINIRTVYRYIDSLCASGVPIISDAGHNGGYSLLQQFNEA 69 Query: 74 QMVPDV---------LIFAHRSGLAGLFP---GLDRRL--VNALLMCDESPCVIAPANPV 119 + D+ FA +G +P L R + + ++ + + Sbjct: 70 PLFFDLNEQKALIHAAAFAQEAG----YPFGADLHRAISKLKRYTNEEQRDAIDRHSIGF 125 Query: 120 P------SPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLV 168 PS + L ++ +++ + R+ + P L+ + WY+V Sbjct: 126 EVIQPPVDPSLESTLQELELSVANGYTLSIEYQKAYQTTRQMRHIDPYGLVYWKGNWYIV 185 Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRL 202 A I F D +H IQ + +F+R Sbjct: 186 AYCHLRSTIRSFRADRVHEIQRTEGSFQRPPEFSAR 221 >UniRef50_A1SPT5 Helix-turn-helix, type 11 domain protein n=2 Tax=Actinomycetales RepID=A1SPT5_NOCSJ Length = 327 Score = 59.2 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 67/200 (33%), Gaps = 40/200 (20%) Query: 32 KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAG-SEMQMVPDVLIFA-- 83 +LA VS RTLRRD +RL L + +G +LR G ++ D A Sbjct: 31 ELAGRLEVSPRTLRRDI-DRLRELGYDVDAVRGVAGGYQLRAGGQLPPLLLEDDEAVAIA 89 Query: 84 --------------------HRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123 + + GL P RR ++A+ ++ V P Sbjct: 90 VALRTAAAGAVAGLEETAIQALTKVIGLMPPRLRRRMDAV--HSQTDGVPWGGGP---AL 144 Query: 124 GALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHI--AV 177 A L QA V+ R R+ P RL+ + WYLVA Sbjct: 145 DAGVLTTLAQACRDDEPVSFSYVSRDSSPSERRVEPHRLVSLGRRWYLVAYDRDRQDWRS 204 Query: 178 FTLDEIHLIQPLQETFRRND 197 F +D + + + F Sbjct: 205 FRVDRVTAPRASGQRFLPRP 224 >UniRef50_D0GJW0 HTH domain superfamily n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJW0_9FUSO Length = 337 Score = 59.2 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 31/223 (13%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+ + ++R+ I+ RL GE +++ K++ E+ V +T++RD Y E Sbjct: 1 MSDKRKDSTEKSIRILKILKRLSKGEIINIEKVSNEYNVHRKTVQRDIESLRAYFLEENS 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFA--HRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP 118 S +T + D F ++ + L+ R N + +I A Sbjct: 61 SEIKYSKTKKGYYLINNDQNNFTNEETLAISKII--LESRAFNKTELEKLLKKLIKQATN 118 Query: 119 -----VPSPSGALSF---------------WRLIQAITGRRRVTLIAEGR----RCERLA 154 + F W L Q I + + + + + Sbjct: 119 EDRKIIEDIIKNEEFNYSPLQHGKNLLSIIWDLSQYIVNKELINIKYTTKDGVQKNYEAK 178 Query: 155 PCRLLIHQQTWYLVAEHEGH---IAVFTLDEIHLIQPLQETFR 194 ++ + +YL+ G A+ +D I I+ + F Sbjct: 179 SLSIMFSEYYFYLITYVNGKEEYPAILRIDRISEIKRKNQKFL 221 >UniRef50_B1HUW4 YobV n=2 Tax=Bacillaceae RepID=B1HUW4_LYSSC Length = 308 Score = 58.8 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 24/208 (11%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL--MYLDLEYQSGYCRLRTAG 70 RL +I L+ + ++ ++LA F VSVRT+ RD E L + + Q G + Sbjct: 4 ERLLTMIMILINRKKVTAQELAELFNVSVRTIYRDI-ETLSCAGIPVISQQGVHGGISLI 62 Query: 71 SEMQMVPDVLIFAHRSGL-----AGLFPGLDRRLVNALLM---------CDESPCVIAPA 116 ++ VL + L + L D + L + Sbjct: 63 DGYRVDKQVLTKEELASLTIAIKSALTTYEDSHALAVLEKLTSIADDHVTQTIDHLFVDL 122 Query: 117 NPV-PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH 171 +P P+ L AI R V+ + P ++ +TWYL Sbjct: 123 SPWGPNILFKEHITSLKSAIENRHCVSFTYTTAHGELTKRVVEPHTIVQKGKTWYLYGYC 182 Query: 172 EGHI--AVFTLDEIHLIQPLQETFRRND 197 + +F L I + F R + Sbjct: 183 TLRMDFRLFKLARIKNLMQEDLHFERKE 210 >UniRef50_A6W4U4 Helix-turn-helix type 11 domain protein n=3 Tax=Actinomycetales RepID=A6W4U4_KINRD Length = 339 Score = 58.8 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 58/200 (29%), Gaps = 37/200 (18%) Query: 32 KLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRTAG-SEMQMVPDVLIFAHR 85 +LA GVS RTLRRD +RL L +G RL + D A Sbjct: 25 ELADRLGVSPRTLRRDV-DRLRALGYPVHAARGVAGGYRLAPGASLPPLALDDEEAVALV 83 Query: 86 SGLAG----------------------LFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123 GL L P L RR+ SP Sbjct: 84 LGLQSVVDAAPASAEAALRALTKAVRVLPPRLQRRVDALRAATATSPA--GSGPGRLPGP 141 Query: 124 GALSFWRLIQAIT--GRRRVTLIAEGRR--CERLAPCRLLIHQQTWYLVAEHEGHI--AV 177 L A+ R + R + P RL+ + WYL+A V Sbjct: 142 DPAVLLTLAAAVQAGERTTLDYTTADGRTGPRSVEPHRLVPLWRFWYLLAHDLDRADWRV 201 Query: 178 FTLDEIHLIQPLQETFRRND 197 F +D I FR + Sbjct: 202 FRVDRIASATAGGARFRPRE 221 >UniRef50_D1CGQ4 Helix-turn-helix type 11 domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGQ4_THET1 Length = 317 Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 75/234 (32%), Gaps = 30/234 (12%) Query: 22 LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL--DLEYQSGYCRLRTAGSEMQMVPDV 79 L A ++ +LA V VRT RR + E L L +E + G ++ P + Sbjct: 15 LQAHGRMTGAELARRLEVDVRTARR-YIEMLQDLGIPIEGERGRYGAYRLRPGYKLPPMM 73 Query: 80 LIF-------------------AHRSGLAGLFPGLDRRLVNALLMCDES--PCVIAPANP 118 A + L R + +L ++ +I P Sbjct: 74 FTEDEALALTLGLLLSRRSALGAATPAIESALAKLSRVMPASLQEQVQAVEESLILDVAP 133 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVAEHEGH 174 SP + + A+ ++RV + P L+ WY Sbjct: 134 AESPPDSSVILTMSLAVHKQQRVRMTYRAWNGEETEREFDPYGLVYRDGRWYTTGYCHLR 193 Query: 175 --IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226 +F LD + I L TF R + L E I +P +++ L T + Sbjct: 194 RAQRLFRLDRVLCIAMLDATFERPEGFDPLQEVVRTIANIPDDWYVEVVLETSM 247 >UniRef50_A9AVG2 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AVG2_HERA2 Length = 320 Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 61/217 (28%), Gaps = 40/217 (18%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSG------- 62 RL I+ L A + LAA F +SVRT+ RD L + + G Sbjct: 6 RLLAIVLELQAHQRRRAADLAATFEISVRTVYRDI---LALCEAGVPIISVPGQGYSLVE 62 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES---PCVIAPA--- 116 L +LI L L+ + P + Sbjct: 63 GYFLPPLQL--TPAEALLIVQGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTM 120 Query: 117 -------NPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---------ERLAPCRLLI 160 + L +AI +R + + GR + P +L Sbjct: 121 QQGMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRTTPFAAARHTTRMVDPYQLTC 180 Query: 161 HQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRR 195 + WYL + F ++ I + L TF Sbjct: 181 VRTVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEP 217 >UniRef50_Q1VU46 Putative transcriptional regulator n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VU46_9FLAO Length = 299 Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 72/216 (33%), Gaps = 31/216 (14%) Query: 26 ETLSVR-KLAA-EFGVSVRTLRRDFRERLMY--LDLEYQSGYCRLRTAGSEMQMVPDVLI 81 E L++ +L +F +S RT +RD ++ + +EY L+T + + D+ Sbjct: 29 EKLALESELQDYDFNISKRTFQRDVKDINSIYSIAIEYD---FSLKTYFIDFEDQQDIK- 84 Query: 82 FAHRSGLAGLFPGL--DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRR 139 +F L RL N + P G + L+ AI Sbjct: 85 -GRVLEAFDIFNALNISDRLSNHIHFEQRKP------------QGTDHLFGLLHAIKNNL 131 Query: 140 RVTLIAEGRR-----CERLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQET 192 ++ L P L + WY+V G I F LD + + + Sbjct: 132 QLKFTYYKFWKDDLTERSLDPYALKEFKNRWYVVGNDPKNGVIKSFALDRLSDLVITNKK 191 Query: 193 F-RRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVP 227 F + N F P+ + +L+F P Sbjct: 192 FHKPNAFQVNQYYKNSFGIISPNEDTPEDIVLSFTP 227 >UniRef50_B0MGX9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MGX9_9FIRM Length = 308 Score = 58.4 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 25/235 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL I+ L+ + +LA++F VSVRT+ RD +Y G Sbjct: 8 RLFKILYYLLEKGQATAPELASKFEVSVRTIYRDIDVMSSAGIPVYAAAGRDGGIKLYDD 67 Query: 69 AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRL--VNALLMCDESPCVIAPANPVPSP 122 ++ + I GL L + + L + AL + + + + Sbjct: 68 FIISKALLSESDIQDIFIGLQSLSAAQYSDHEGTLEKLGALFKKTNTDWIEIDFSRWGAC 127 Query: 123 SGALS--FWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE--HEGH 174 F L ++ R+ + R R P +LL ++WYL Sbjct: 128 VQKEHEIFSLLKISVLKRQEIVFCYYNSRGEVSERRCRPIKLLYKDRSWYLFGFCCKRND 187 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPAD 229 +F + + ++ + F + D + I LP + + + P D Sbjct: 188 YRLFRVSRMRSLKLTEVMF------DEIPHDNLNILPLPEDMEVLNEIELRFPLD 236 >UniRef50_B2PXP4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PXP4_PROST Length = 64 Score = 58.4 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 169 AEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226 AE+ + VF L++I ++PL TF ++ +L + FI ALPHFR I L+ + Sbjct: 2 AEYHQKVHVFLLEDIQSVKPLSSTFIPQKNINQLSQQNSFIAALPHFRLISQLLMPLI 59 >UniRef50_C2SK93 Putative uncharacterized protein n=1 Tax=Bacillus cereus BDRD-ST196 RepID=C2SK93_BACCE Length = 328 Score = 58.4 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 28/213 (13%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGY--------- 63 R+ + RL +++ + A F VS +T++RD Y++ +GY Sbjct: 9 YRILSMYDRLRNEKSIYKQIEAVNFHVSEKTIQRDIDHLRGYIETNMVNGYVEYDRKTNA 68 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM---CDESPCVIAPANPVP 120 L + + + FP + + L ES +I Sbjct: 69 YNLSSENKNSLTNEKIFAILKVLLESRAFPKNEMYQIIDSLTGLAQTESQGIIKKMTANE 128 Query: 121 SPSG---------ALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWY 166 + W+L QAI ++ + + + P ++ + +Y Sbjct: 129 KILYGELQHQKDVSGLLWQLAQAIQFKKVIHFQYQREFDQFPDERIVKPVGVIFSEYYFY 188 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 LVA F I+ I + E + + Sbjct: 189 LVAYQ--TKYDFDFPTIYRIDRMNELYIKEQHF 219 >UniRef50_C4LIK8 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIK8_CORK4 Length = 694 Score = 58.0 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 55/186 (29%), Gaps = 13/186 (6%) Query: 40 SVRTLRRDFRE-RLMYLDLEYQSGYCRLR-TAGSEMQMVPD---VLIFAHRSGLAGLFPG 94 R L RD + R + D++ + T ++ D V+ A + L+G Sbjct: 58 CRRKLNRDIAQLRDLGFDIDATDDGYLMDFTQTVDVHFTQDEMGVIALASQFALSGDLAA 117 Query: 95 LDRRLVNALLMCDESPCVI-APANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GR 148 L RR L V P + F L++AIT V + Sbjct: 118 LGRRAWVKLSAAGSLGTVAPIHGVPDSTDLTGPDFSTLLRAITESTVVNFLYYPSIEDEP 177 Query: 149 RCERLAPCRLLIHQQTWYLVAEHEG--HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206 + P L+ WYL F L I+ IQ D + Sbjct: 178 SLRTVEPWALVPESGRWYLACFDRDREKPRSFRLARINSIQETDTPATHTDQRAAIAPSE 237 Query: 207 VFIQAL 212 + L Sbjct: 238 LVRSQL 243 >UniRef50_Q30U25 Putative uncharacterized protein n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30U25_SULDN Length = 87 Score = 58.0 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGY 63 A++ +D+ RL I+S L E ++ LA EF VS RT++ D +RL D+ + + Sbjct: 2 AQKSYDKALFRLISILSMLTKDERPTISSLAEEFNVSKRTIQTDIYQRLRGWDI-TKDKF 60 Query: 64 CRL 66 RL Sbjct: 61 GRL 63 >UniRef50_C6D6Y8 Helix-turn-helix type 11 domain protein n=7 Tax=Firmicutes RepID=C6D6Y8_PAESJ Length = 314 Score = 58.0 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 69/205 (33%), Gaps = 38/205 (18%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66 + RL ++ + V++LA EFGVS RT+ RD +E +Y ++ GY L Sbjct: 4 SKRLMELMMTVNRKRRFKVQELADEFGVSKRTILRDLQELSELGVPLYSEVGPHGGYQVL 63 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN--------- 117 R + F +A F R ++L ES + Sbjct: 64 RERVLPP------IAFTEEEAVAMFFAVHALRHYSSLPFETESVSALNKFYLHMPGDVRD 117 Query: 118 PVPSPSGALSFW------------RLIQAITGRRRVTLIAEGR----RCERLAPCRLLIH 161 + S + F L+ A ++ + + E + C ++ P + H Sbjct: 118 RIDSMKHRVDFITPTRRGDAPCLAVLLDAAVHQKVLDIEYETKGSEAGCRKIQPVCIYAH 177 Query: 162 QQTWYLVA--EHEGHIAVFTLDEIH 184 WY A VF D I Sbjct: 178 NGLWYCTAFCFLREGFRVFRCDRIR 202 >UniRef50_D2R1Q3 Helix-turn-helix type 11 domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R1Q3_9PLAN Length = 332 Score = 57.6 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 31/216 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRR---DFRER---LMYLDLEYQ----SGY 63 R+ +I L + + LA VS RT+ R D RE L+Y D E + G Sbjct: 12 RIVKLIGLLQGSQGYNAPALARACEVSTRTIFRYLEDLREAEVPLVY-DEERKTYRIPGQ 70 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFP----------GLDRRLVNALLM--CDESPC 111 L +L+ H G P L+ L LL + S Sbjct: 71 FFLPPTNFTADEAIAMLVLCHELGDQHKIPLFAAARSAAAKLETSLPRRLLEYLRNLSGA 130 Query: 112 VIAPANPVPSPSGALSFW-RLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTW 165 + + G + L++AI R V + + +L P +LL +Q +W Sbjct: 131 LSIKLDATNPLEGQQGTYAELVEAIGQRHAVRIAYRSLHEKEHIETKLEPYQLLFNQHSW 190 Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSL 199 Y++ + F + I + L + S Sbjct: 191 YVIGRSSLHREVRTFNVGRIDSLAMLDTPYEVPKSF 226 >UniRef50_D1A246 Helix-turn-helix type 11 domain protein n=3 Tax=Actinobacteria (class) RepID=D1A246_THECD Length = 317 Score = 57.6 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 69/201 (34%), Gaps = 41/201 (20%) Query: 32 KLAAEFGVSVRTLRRDFRERLMYL----DLEYQ-SGYCRLRTAG-SEMQMVPDVLIFAHR 85 +LAA+ GVS RTLRRD +RL L D E G +LR+ ++ D A Sbjct: 18 ELAAKLGVSERTLRRDI-DRLRELGYPVDAERGVGGGYQLRSGTAMPPLLLDDEEAVAIA 76 Query: 86 SGLAG-----------------------LFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 GL + P RR V AL E P V Sbjct: 77 VGLRSAAAGAVGAGVGETSVRALAKVIQVMPPRLRRRVQALQDYTE-PGTGGAGPAV--- 132 Query: 123 SGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHI--A 176 A + L Q R+ R + P RL+ + WYLVA + Sbjct: 133 -DAEALTVLAQCCRDGERLRFAYRARDGRQSARTVEPHRLVALDRRWYLVAWDLERLDWR 191 Query: 177 VFTLDEIHLIQPLQETFRRND 197 VF +D + P E FR Sbjct: 192 VFRVDRLGDPLPAGERFRPRP 212 >UniRef50_B1YFZ6 Helix-turn-helix type 11 domain protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFZ6_EXIS2 Length = 295 Score = 57.6 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 71/208 (34%), Gaps = 29/208 (13%) Query: 22 LVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRTAGSEMQMV 76 L + L+ R+LA GVS+RT++RD E +Y + GY L + Sbjct: 12 LNRQQLLTARELAEACGVSLRTIQRDLLELEANGYPIYSERGPAGGYRVLPNRLLPPLAL 71 Query: 77 PD---VLIFAHRSGLAGLFPGLDRRLVNALLMC--------------DESPCVIAPANPV 119 + + +F + + P L + L D + A P Sbjct: 72 REQEAITLFLMIDWVGQI-PDLPFGALRGNLAEWYLHELPGDLEVKLDRLKGRVRFARPD 130 Query: 120 PSPSG-ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 S + RL++A GRR + P L + WYL+A+ E + + Sbjct: 131 TPASPLTRNLLRLMEAEVKGEITYETTSGRRTILIDPIGLTFDRNRWYLLAQTERGLRQY 190 Query: 179 TLDEIHLIQPLQE-----TFRRNDSLCR 201 +D I + TF + L Sbjct: 191 RVDRIEQVTETTIPSKRMTFEEAEHLNE 218 >UniRef50_Q82JJ5 Putative DeoR-family transcriptional regulator n=2 Tax=Streptomyces RepID=Q82JJ5_STRAW Length = 318 Score = 57.6 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 64/205 (31%), Gaps = 29/205 (14%) Query: 24 AGETLSVRKLAAEFGVSVRTLRRDFR-----------ERLMYLDLEYQSGYCRLRTAGSE 72 + +LA VSVRT+ RD ER + +E +G+ R G Sbjct: 15 TRGRVPAHELATRLEVSVRTIYRDIEALSASGVPVYAERGRHGGIELLAGF-RTDVTGLT 73 Query: 73 MQMVPDVLIFAHR-----SGLAGLFPGLDRRLVNALL-------MCDESPCVIAPANPVP 120 + I A + GL R+++ AL ++ Sbjct: 74 ADESRALFILAAQGAHAALGLDAALGSALRKVMTALPAPHRPAAEATSRRVLVDATRWKG 133 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVAEHEGHI 175 P + L A+ RR+ L + P L+ WYLVA+ Sbjct: 134 GPQPVVDLETLQDAVFADRRLRLRYRHGGDAQPHTYTVDPYGLVSKAGVWYLVADRRAKP 193 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLC 200 +F D + L + RR + Sbjct: 194 QLFRADRVRSATLLADPVRRRPGVE 218 >UniRef50_Q2S472 Putative DeoR-family transcriptional regulator n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S472_SALRD Length = 319 Score = 57.6 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 70/228 (30%), Gaps = 36/228 (15%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG-YCRLRTA 69 + R I+ +L LA GVS RT+ RD + + + L+ G RL Sbjct: 4 SERWPAILLQLEPDAWTRATDLARALGVSERTVYRDVQAMVEAGVPLQGVPGKGYRLPDD 63 Query: 70 GS--EMQMVPD---------VLIFAHRSG------------LAGLFPGLDRRLVNALLMC 106 +++ D + SG + + P DR V +L Sbjct: 64 YLLAPIRLTRDEAVMLVLGSAYAARNFSGRYQAAARAARHKIEDVLPPDDRERVLSLRGS 123 Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIH 161 + P+N + + A+ R + G R+ P L+ Sbjct: 124 VS----LIPSNVFGDSTEDGLLRQARHALVEERTLLATLAGASDNGPSTRRIDPYGLVRQ 179 Query: 162 QQTWYLVAEHEGHIAV--FTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207 W+LV V L+ I + TF R S + P Sbjct: 180 GSAWHLVGYGHDREHVVHLRLERIRGLDMTDATFERPASYGARSQGPA 227 >UniRef50_C3JIV6 DeoR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JIV6_RHOER Length = 321 Score = 57.6 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 62/195 (31%), Gaps = 30/195 (15%) Query: 32 KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMVPD-------- 78 +LAA V+ RT+RRD +RL L + G RL T ++ D Sbjct: 26 ELAARLDVTQRTVRRDI-DRLRDLGYPVDSTSGKYGGYRLATGAHVPPLILDDDESVAVA 84 Query: 79 -VLIFAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAPANPVPSPSGALSFW------ 129 L +A + + G+ R L + LL V A + V S A Sbjct: 85 VGLRYAAEAAIGGIEETSLRALTKIETLLPHRLRRRVSALHSSVSSIRRADDDIVDPEAL 144 Query: 130 -RLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDE 182 L A V + P RL+ + WYLVA F LD Sbjct: 145 SVLAAACRDHEHVRFDYRRGDGESSRRLVEPHRLVTAGRRWYLVAWDHHRSDWRTFRLDR 204 Query: 183 IHLIQPLQETFRRND 197 + F + Sbjct: 205 LSEPWLAGSHFTPRE 219 >UniRef50_UPI000185D3A7 conserved hypothetical protein n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D3A7 Length = 309 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 48/176 (27%), Gaps = 32/176 (18%) Query: 37 FGVSVRTLRRD----FRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLF 92 + RT RD ER + L+ S + + + + Sbjct: 50 YNYKERTFERDKCDLLTERDIQLNYTRSSNIYTINWSELSEEQNFQIEN----------- 98 Query: 93 PGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-- 150 + L + G + LI AI + + R Sbjct: 99 -----DWLQEALRQNPYQKHFIHFEKR-PTRGLNWLYGLIYAIDNHQLLQFTYHKFREDT 152 Query: 151 ---ERLAPCRLLIHQQTWYLVAEHE------GHIAVFTLDEIHLIQPLQETFRRND 197 + P L WYL+A I+VF LD I + L+ETF Sbjct: 153 YLSHTVQPYALKEFDYHWYLLACDTAPNNDLPSISVFALDRITDLDILKETFTPTP 208 >UniRef50_C5BNS8 HTH domain protein n=2 Tax=Gammaproteobacteria RepID=C5BNS8_TERTT Length = 245 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 26/210 (12%) Query: 10 RLAVRLSLIISRL-VAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-YCRL 66 R A RL I++ L L+ R++A + VS RT+ RD + L + +E ++G RL Sbjct: 2 RKAERLFQILNLLRNRRTVLTARQIAEQLAVSERTVYRDIQALSLSGVPIEGEAGVGYRL 61 Query: 67 -RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV------ 119 R M + A G A + R + A + + + Sbjct: 62 QRQFDLPPLMFDRDEVEALLLG-ARMIRAWSDRQLAAAASSALNKILAVLPPQLRELEET 120 Query: 120 ---------PSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWY 166 S ++ ++ AI ++++ + E + P L TW Sbjct: 121 SAIKVPDYQQQLSVSVHSEQIRAAIRSQQKIAIDYEDAQAQLSHRCVLPLGLFFWGATWT 180 Query: 167 LVAEHEGHI--AVFTLDEIHLIQPLQETFR 194 LV E + F LD I + L E F Sbjct: 181 LVGWCELRLAYRAFRLDRIRHFELLAENFA 210 >UniRef50_C3QKP9 Transcriptional regulator n=2 Tax=Bacteroides RepID=C3QKP9_9BACE Length = 303 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 32/177 (18%) Query: 39 VSVRTLRRDFRERLMYLDL-----EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFP 93 V +RTL+RDF++ + + Q+GY + + +L Sbjct: 46 VDIRTLQRDFKDIEDLFGIRICFDKKQNGYYINEEDDLKKEQYERLL------------- 92 Query: 94 GLDRRLVNAL--LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA------ 145 L+ L+NAL + + + P + + LI+AI V Sbjct: 93 -LNFDLLNALDKISNLHTYVLAEHHRP----NDSECLPALIKAIKFFHPVEFSYIYVREG 147 Query: 146 EGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPL-QETFRRNDSLCR 201 + R +++ P L QQ WYL+A + F +D I +Q L +ETF+RN ++ Sbjct: 148 DKVRKKKVLPYYLKEDQQRWYLLAYDNNILKTFNIDCIRNLQILYEETFKRNMNIDA 204 >UniRef50_C4Z6L6 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C4Z6L6_EUBE2 Length = 329 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 45/235 (19%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-- 61 A +D+++ LSL RL+ G+ + AA +GVS R+++RD + + E + Sbjct: 15 ANDYNDKVSRVLSL-YQRLMEGKVVDKEAEAARYGVSARSIQRDISAINNFFEQETEKSG 73 Query: 62 -----------GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP 110 G L ++L + F + +L+ +P Sbjct: 74 VINSIEYDKKRGGHYLSQIYRTRLTNSEILAICKILLDSRAFTRERMEHILDILVDRCTP 133 Query: 111 CV-------IAPA--NPVPSPSGALSF----WRLIQAITGRRRVTLIAEGRRC-----ER 152 + + F W + QAI R + + + + R Sbjct: 134 AEGKAIVQDLIKNEEFHYIELTHKSEFVDKMWDIGQAIHQNRYLEMDYKRTKDGAIVKRR 193 Query: 153 LAPCRLLIHQQTWYLVAEHEGH-------------IAVFTLDEIHLIQPLQETFR 194 + P ++ + +YL A E ++ +D I + L + F+ Sbjct: 194 VKPVAIMFSEYYFYLTAFIEDEDVKADFDVIDDAFPTIYRIDRIAGYKVLDKQFK 248 >UniRef50_D0L3I9 Helix-turn-helix type 11 domain protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L3I9_GORB4 Length = 328 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 69/210 (32%), Gaps = 21/210 (10%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66 A RL ++ L ++ +LA E VS RT+ RD +Y + G+ L Sbjct: 3 AERLLAVLMLLKTHSRMTAAQLADELDVSERTVLRDIDALSLSGIPVYAERGRHGGFALL 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVNALLMCDES------------P 110 +++ + +G L F R++ +L + P Sbjct: 63 PGYRTDLSGLTLDEARTLVAGGGRLDSPAFASAMRKVAASLPDAFRTSAVRAAQRILLRP 122 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAE 170 G + R AE L P L++ TWYLVA Sbjct: 123 EGFVHPPREIDALGPVQQAVFDGRRIRVRYRRRGAERAAERVLDPIGLIVAGDTWYLVAT 182 Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 +G ++ + + ++ L E R D + Sbjct: 183 ADGTERMYRMSRMSDVEILDEPAARADDVD 212 >UniRef50_Q11UB6 Transcriptional regulator, DeoR family n=7 Tax=Bacteria RepID=Q11UB6_CYTH3 Length = 230 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 67/209 (32%), Gaps = 25/209 (11%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR---ERLMYLDLEYQSGYCRLRTAG 70 RL+ II++L L+ +LA F VSVRT+ RD R + + + E GY + Sbjct: 11 RLTAIITQLQTKRLLTATELANRFSVSVRTIYRDIRALEQSGVPILTEEGKGYTLMEGYR 70 Query: 71 SEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWR 130 M + A + D V + + + R Sbjct: 71 IPPVMFTESQANALILAEQLVLKNKDASFVQHYSEAIDKIKAVLGHPIKDKVNLLAERTR 130 Query: 131 LIQ----------------AITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA- 169 Q A+T + E + + P LL Q+ W LVA Sbjct: 131 FDQNTNRERNSKDLSDLQFALTNFYLTRIEYINEAEAQTDRLIEPFALLSTQENWLLVAW 190 Query: 170 -EHEGHIAVFTLDEIHLIQPLQETFRRND 197 F LD I ++ E F ++ Sbjct: 191 CRLRNEFRYFRLDRIKKLEIQTEKFNPHN 219 >UniRef50_A5FLV0 Helix-turn-helix, type 11 domain protein n=3 Tax=Flavobacteriales RepID=A5FLV0_FLAJ1 Length = 319 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 34/219 (15%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSG-------YCR 65 R+ I+ +L + + + ++LA F S+RT+ RD R + + ++G R Sbjct: 11 RIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAGVGYALMDGYR 70 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLF--PGLDRRLVN--------------ALLMCDES 109 L M +V F L F P L + L ES Sbjct: 71 LPPV---MFTREEVSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKDYLSNIES 127 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQT 164 V+ A P+ + + + L + I ++++ L + L P + Sbjct: 128 RIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQILLTYKTFDKEETTQRNLEPVGVFHDNNN 187 Query: 165 WYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCR 201 WY + F D I I+ F Sbjct: 188 WYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALE 226 >UniRef50_D0LH85 Putative DeoR-family transcriptional regulator n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LH85_HALO1 Length = 369 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 10/114 (8%) Query: 93 PGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL---SFWRLIQAITGRRRVTLIAEGRR 149 P + V+ + + F +L A R+R++L Sbjct: 151 PDTPSEFLAQARTATRRDPVLVHFPANTAANARELGDRFSQLEAATRNRKRLSLHYRNAS 210 Query: 150 C-----ERLAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRN 196 + P L+ Q WY+V + F D I ++ + + Sbjct: 211 TAEVQARDVDPYGLIYRQGAWYVVGYCHLREDVRSFRFDRIEELKIAPKPKSPD 264 >UniRef50_A8W027 Regulatory protein GntR, HTH n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W027_9BACI Length = 328 Score = 57.2 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 64/214 (29%), Gaps = 28/214 (13%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLE----YQSGYCRL-R 67 RL I+ L +T++ +LA + RT+ RD L E + GY L Sbjct: 10 ERLFYIMQFLSNHDTVNAGELADHCQATKRTIYRDIH-FLQSQGHEIQTQGREGYKLLIP 68 Query: 68 TAGSEMQMVPD-----VLIFAHRSGLAGLFPGLDRRLVNAL-----LMCDESPCVIAPAN 117 ++ D L SG+A R L L +P Sbjct: 69 NMQVRSKLTEDEWLSLTLYPLLSSGIASSDHPYHRHYKTGLEKVMRLASGGAPNPAFAER 128 Query: 118 PVPSPSGALSFW-----RLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTWYL 167 +F +I AI+ R + + RL P L+ + YL Sbjct: 129 IRLHARTQDTFQAKVMPAIITAISDNRCIDVRYYAMHRSEWSERRLEPYYLVPREGHLYL 188 Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 VA I VF L+ + F Sbjct: 189 VAFCRLRNDIRVFRLNRFEDVHVTDAPFTIPQDF 222 >UniRef50_A4FF91 DeoR-family transcriptional regulator n=17 Tax=Bacteria RepID=A4FF91_SACEN Length = 337 Score = 56.9 bits (136), Expect = 5e-07, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 79/228 (34%), Gaps = 35/228 (15%) Query: 32 KLAAEFGVSVRTLRRDFRER--LMYLDLE---YQSGYCRLRTAGSEMQMVPD-------- 78 +LA GVS RT+RRD + L Y + ++G RL ++ D Sbjct: 25 ELAERLGVSARTVRRDVDKLRGLDY-PISVGMGRAGGYRLGAGARLPPLLLDDDEAVAVA 83 Query: 79 -VLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWR 130 L A SG+AG+ L++ L + L E+ V P A Sbjct: 84 VGLRTATGSGVAGVGETALRALVKLEQVLPDRLWRRIEALQVSTVEAPGAPSVDAGELTA 143 Query: 131 LIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDEIH 184 + A R+R+ P +L+ + WYLVA F +D + Sbjct: 144 VATACRDRQRLRFDYRSHDGQETPRVTEPHQLVTWGRRWYLVAWDLERQDWRTFRVDRMR 203 Query: 185 LIQPLQETFRRN--DSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADS 230 P F V V +A P+ Q ++ VPADS Sbjct: 204 TRVPTGPRFAPRDMPDAAAFVASGV-ARAWPY----QATVRLAVPADS 246 >UniRef50_B9XP79 Helix-turn-helix, type 11 domain protein n=1 Tax=bacterium Ellin514 RepID=B9XP79_9BACT Length = 334 Score = 56.9 bits (136), Expect = 6e-07, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 34/216 (15%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF---RERLMYLDLEY---QSGYCR-L 66 RL +I + G + K+A EF VS +++ RD R+RL L + Y + GY Sbjct: 24 RLHQLIQK---GRYPNAPKVAREFEVSSKSIHRDLEFMRDRLG-LPIGYDQDRHGYYYTE 79 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGL---------------FPGLDRRLVNAL-LMCDESP 110 V + + A L F + L + + + + Sbjct: 80 EVGAFPTIQVTEGELLAMVVAEKALQQYRGTNFEKPLMTAFKKMSASLSDTVSVNIADFE 139 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTW 165 I+ + F L +A R+++ LI + P L W Sbjct: 140 QTISFSTRAEPILNLEIFDALGKAAANRQQLELIYRKPGQRETEVRVIDPYHLANINGEW 199 Query: 166 YLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199 YL A I F I + + F R Sbjct: 200 YLFAYDHLRNDIRTFVPARIKAFKLTGKRFPRPQKF 235 >UniRef50_Q3JYW1 Putative uncharacterized protein n=2 Tax=Streptococcus agalactiae RepID=Q3JYW1_STRA1 Length = 316 Score = 56.9 bits (136), Expect = 6e-07, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 40/232 (17%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRL 66 + RL I + + + +LA +F VS RT++RD E + Y ++ GY L Sbjct: 4 SSRLIDIWLYINNHKKFTTTELATKFNVSTRTIQRDIDELSLLGVPFYSEVGRNGGYTML 63 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126 F+ ++ + E VIA S S Sbjct: 64 HQEVLPPIS------FSEDEIISIILTYKSMIQYKDFPYQFEIESVIAKLLSNSSTSLLE 117 Query: 127 SFWRLIQ---------------------AITGRRRVTLIA---EGRRCERLAPCRLLIHQ 162 ++ + A + V ++ E + + L P + Sbjct: 118 RLSQVEKCFYLKIPVRNEKTPYLKEVFNASIKNKCVEVMYDSLENKNKKLLFPIGIYSDN 177 Query: 163 QTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 WY A + + +D I + +T + + + RL + F + Sbjct: 178 GYWYFCAIDNHLKEVRTYRVDRIKSL-VTNDTIQCDKN--RLTIEDAFANQV 226 >UniRef50_A4BKA3 Predicted transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BKA3_9GAMM Length = 235 Score = 56.9 bits (136), Expect = 6e-07, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 34/224 (15%) Query: 12 AVRLSLIISRLVAG--ETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSG-YCRL- 66 A RL I++ L+ G + ++ ++L+ VSVRT+ RD D+E ++G RL Sbjct: 4 AERLLAILN-LLRGRHQAMTAQQLSEHLDVSVRTIYRDIEALCRQGADIEGEAGIGYRLT 62 Query: 67 RTAGSEMQMVP----DVLIFAHRSGLAGLFPGLDRRLVNAL--------------LMCDE 108 + L F R A P L + AL + Sbjct: 63 DRGHLPPLTFTIDELEALTFGARLVKASADPTLAQAADQALQKVRSVLPAHRQHEIERRR 122 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQT 164 +P ++A A + QAI R V+ + + + P L+ Sbjct: 123 APMLVATHTSTHLSQYAAE---IRQAIAAERLVSFGYQDEKRRQTDRTVQPLGLVYWGYC 179 Query: 165 WYLVA--EHEGHIAVFTLDEIHLIQPLQETF-RRNDSLCRLVED 205 W+LVA VF L+ + ++ + F R ++ + +++ Sbjct: 180 WHLVAWCLLRESYRVFRLERLQHLEVTDQRFCRPEATIQQYLQE 223 >UniRef50_C2C3S2 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C3S2_LISGR Length = 313 Score = 56.5 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 21/199 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL------MYLDLEYQSGYCRLR 67 RL ++ L++ + LS ++LA + VSVR++ R + E L +Y G L Sbjct: 19 RLFKMVYLLMSNDKLSAKELADKLEVSVRSVYR-YMENLSEAGIPIYASQGRNGGISLLP 77 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGL--FPGLDRRLVNALLMCDESPCVIA----PANPVPS 121 +V + + L D+ ++ L + + P+ S Sbjct: 78 QFRMNSALVSEKEQNDILASLQSFASIEQSDQDTLDKLSAVFQKKPISWIEIDPSTWSNS 137 Query: 122 PSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGHI-- 175 + + QAI + +T + + P +++ + WYL Sbjct: 138 REQKSTLAIIKQAIFQSQMLTFDYLNSKNEQLAREVYPYQVVFKDRAWYLKGYSIEREDW 197 Query: 176 AVFTLDEIHLIQPLQETFR 194 +F L +H + +TF Sbjct: 198 RLFKLTRMHNVTI--DTFT 214 >UniRef50_A8FE45 Possible transcriptional regulator n=2 Tax=Bacillus pumilus RepID=A8FE45_BACP2 Length = 310 Score = 56.5 bits (135), Expect = 7e-07, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 28/213 (13%) Query: 9 DRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYC--- 64 DR+ + L+IS+ + + + LA VS RT+ RD + + G Sbjct: 4 DRILSTVMLLISK----KQVQAKDLAELHEVSTRTIYRDIDTINQAGIPVVTTQGAGGGI 59 Query: 65 -RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALL------------MCDESPC 111 + E ++ D I + L + + +L ++ Sbjct: 60 SLVEDYRLEKKLFTDDDIEVILTALESMMSAYSFKESEHVLKKIKSLIPTQTGENEKQHH 119 Query: 112 VIAPANPVPSPSGALSFWRLIQ-AITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166 V + S A +LI A + + + + + P L++ + WY Sbjct: 120 VFIDLSSWGKDSQAEQKLQLIHTAASAHQYIQFTYRNAKGETLPRNVEPYTLVLKGRHWY 179 Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQETFRRND 197 L A +F L + + + F+ Sbjct: 180 LYAFCCVKKAFRLFKLTRMTGLVAISGYFQPKR 212 >UniRef50_Q03GJ9 Predicted transcriptional regulator n=7 Tax=Bacteria RepID=Q03GJ9_PEDPA Length = 310 Score = 56.5 bits (135), Expect = 7e-07, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 24/207 (11%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCR 65 + + RL+ + L + ++ L EF +S RT RD +E L Y ++G R Sbjct: 2 KKSERLNQELIFLRDKYSFQLKDLITEFDISKRTALRDIQELEAMGLAYYTEPGRNGGYR 61 Query: 66 L--RTAGSEMQMVP----------DVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP--- 110 L ++ + L + + + ++L + ++ Sbjct: 62 LLNQSNLIPIYFNKKEVQAIFFALKALRVLSVTPFDESYARIQQKLFATMSPENQQDISN 121 Query: 111 -CVIAPANPVPSPSGALSFWRLIQAITGRRR--VTLIAEGRRCERLAPCRLLIHQQTWYL 167 + + V + ++ AI + + +L L W+ Sbjct: 122 LLAVVHYHNVAPVGDVANLEIILNAILEEQVIQIHYTQYEDVHIQLQIYELFYRNGIWFT 181 Query: 168 VAEHEGHIA--VFTLDEIHLIQPLQET 192 A + + + D +H ++ Sbjct: 182 SAYNPDTLRWGTYRCDYMHDLKINPTK 208 >UniRef50_UPI000185CDFC conserved hypothetical protein n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185CDFC Length = 302 Score = 56.5 bits (135), Expect = 7e-07, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 31/228 (13%) Query: 14 RLSLIISRLVAGET-LSVRKLAA-------EFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 RL II L + LS + +A E+ S RT+RRDF + + ++ Sbjct: 9 RLVHIIRLLTTHKNGLSAQSIADYLADEGDEYAFSNRTIRRDFDDIYIAFGIDIT----- 63 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 L + PD +A LD L+ ++ + V G Sbjct: 64 LNAKEKVWAINPD--------SIANKQSILDHLLLVDAHRKAKNTGTLL--LEVQPEKGL 113 Query: 126 LSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYLVAEHEG---HIAV 177 ++ AI+ +T E + ++ P + +Q WYL+A + Sbjct: 114 EMLDPILTAISQNVLITFTHTSFGWETTKAYQVLPYAVKEYQGRWYLIATDNKQPIKLKA 173 Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 F LD I ++ + +R D + A+ +Q +L+F Sbjct: 174 FALDRISNLEVIDIQVKRKKIDMESFFDHFYGVAIAEGEPLQKVVLSF 221 >UniRef50_Q11X99 Transcriptional regulator, DeoR family n=2 Tax=Sphingobacteriales RepID=Q11X99_CYTH3 Length = 231 Score = 56.5 bits (135), Expect = 7e-07, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 31/226 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR---ERLMYLDLEYQSGYCRLRTAG 70 RL +I+ L A + +S K+A +F +S RT+ RD + E+ + + E GY + Sbjct: 8 RLLGMITLLQAKKFVSAEKIADKFKISKRTVFRDIKAICEQGIPVGSEPNKGYFIVDGYF 67 Query: 71 SEMQMVPD------------VLIFAHRSGLAGLFPGLDRRLVNALLMCD-----ESPCVI 113 + + V FA +S ++ + ++ L D I Sbjct: 68 LPPVLFNNDEANALLLTESLVKGFADKS-ISKHYSNALDKIKAGLKQVDKDKLEHMQDAI 126 Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVA 169 P + L A++ ++ + + + + + P L+ + +W+L+ Sbjct: 127 KFQLPERMNNDFEYLSILQVAVSDKKIIYIDYKNNKEEVSKREIEPIGLIFYAFSWHLIG 186 Query: 170 --EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 H F + I ++ F++N + +++ LP Sbjct: 187 WCHHRKAYRDFKVSRIIQMKNTGVPFKKNKH----MPLSEYMKELP 228 >UniRef50_C0ZA21 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA21_BREBN Length = 306 Score = 56.5 bits (135), Expect = 7e-07, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 75/222 (33%), Gaps = 28/222 (12%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL------EY 59 R DRL L LIIS+ T++ ++LA F VS+RT+ RD E+L + Sbjct: 1 MRVDRLLSML-LIISK---KGTVTGKELAEHFEVSIRTIYRDI-EKLGEAGIPIASIGGK 55 Query: 60 QSGYCRLRTAGSEMQMVP--DVLIFAHRSGLAGLFPGLDRRLVNALL--------MCDES 109 GY + + + + F G + + +L + S Sbjct: 56 GGGYYIMEDYNVDNLFLNKDEASTFMAIMNNLSFLFGKNTTFHDIVLKIENTLKQEKNTS 115 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165 I ++ L AI + V R + P ++ W Sbjct: 116 KLDINLSHFSMENELKEYLLLLNNAIEKNKLVVFEYINRSMEYLERTVEPFQITFSAGQW 175 Query: 166 YLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 YLV F L I ++ ++ F + D + +E+ Sbjct: 176 YLVGFCKERNGYRRFKLVRIKNLKMGED-FEKKDISNKEIEE 216 >UniRef50_D1BRS2 Helix-turn-helix type 11 domain protein n=2 Tax=Micrococcineae RepID=D1BRS2_XYLCX Length = 320 Score = 56.5 bits (135), Expect = 8e-07, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 63/195 (32%), Gaps = 30/195 (15%) Query: 31 RKLAAEFGVSVRTLRRDFRERLMYL--DLEYQ---SGYCRLRTAGS-------------- 71 ++LA GV+ RT+R D RL L + G RL Sbjct: 24 QELAQRLGVTDRTVRNDVA-RLRELGYPVHTTRGPGGRYRLGAGAVLPPLLLDDEEAVAI 82 Query: 72 --EMQMVPDVLIFAHRSG-----LAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 ++ + F G L + P RR + AL + V +N Sbjct: 83 AVGLRATTGMKAFEESGGRALTKLEQVMPQRIRRRIEALRSATSAGPVNTDSNVEDPVVE 142 Query: 125 ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDE 182 + AI RR + E R E + P L++ Q+ WYLV G +D Sbjct: 143 PELLTEISAAIRDRRTLRCDYEQRTVE-VEPYHLVVWQRRWYLVCRDVASGRWEPLRVDW 201 Query: 183 IHLIQPLQETFRRND 197 I L P F Sbjct: 202 IRLRTPGGRRFSPAP 216 >UniRef50_Q12H80 Helix-turn-helix, type 11 n=7 Tax=Proteobacteria RepID=Q12H80_POLSJ Length = 316 Score = 56.5 bits (135), Expect = 8e-07, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 32/230 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYCRLRTAGSE 72 R+ ++ L A LS +LA V RTLRR + + + + G + + Sbjct: 7 RVLTVLELLQAHGRLSGAELARRLEVDGRTLRRYIAKLESLGIPVVAERGRYGCYSLVAG 66 Query: 73 MQMVPDVLIFAHRSGLA---GLFPGLDRRLVNALLMCDESPCVI-----APANPVPSPSG 124 ++ P ++F LA GL L A + + G Sbjct: 67 FKLPP--MMFTDDEALALSIGLVAARGLGLAEAAPAVQSAQAKLERVMPGKLKNRIRALG 124 Query: 125 ALSFWRLIQAI---------------TGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165 L +A+ G +RV L + P L W Sbjct: 125 ETVTLDLTRAVAPGDNTALLALSAAAHGWQRVHLSYQSADGVVTERDFDPYGLAYRGGRW 184 Query: 166 YLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 Y+V G + F LD + +QPL F + + + +P Sbjct: 185 YVVGLCHLRGGLRSFRLDRVQQVQPLNAVFTPPADFNAVQHLALGLATMP 234 >UniRef50_C7NJB0 Predicted transcriptional regulator n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NJB0_KYTSD Length = 238 Score = 55.7 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 73/211 (34%), Gaps = 30/211 (14%) Query: 9 DRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-----GY 63 D + R +++S L + +LA ++ RT+RRD RL L + +S G Sbjct: 2 DSPSSRALVLLSLLQTRRAWTALELARHLDIAERTVRRDI-SRLRSLGYDIRSAPGPGGT 60 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLF------PGLDRRLVNALLMCDESPCVIAPAN 117 RL + ++ D + GL P V A L P + A Sbjct: 61 YRLVPSIKIPPLLLDADEVCSL--VTGLLILEAGSPDTAAAAVRAKLEQLLPPRLRHRAA 118 Query: 118 ------PVPSPSGALSFWRL----IQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQ 163 V +P + W L +A+ ++ + + + P R ++ Sbjct: 119 ATALATQVITPVAKTADWHLLGLLAEAVAQQQHLQFTYTDQHGEVTERLVNPYRHVLRNG 178 Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQET 192 WYLVA +F LD IH P Sbjct: 179 IWYLVAFDTKRDDWRLFRLDRIHDASPRPAP 209 >UniRef50_UPI0001794C37 hypothetical protein CLOSPO_01499 n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=UPI0001794C37 Length = 352 Score = 55.7 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 26/205 (12%) Query: 22 LVAGETLSVRKLAAEFGVSVRTLRR---DFRERLMYLDL--EYQSGYCRLRTAGSEMQMV 76 L + + + +A E V R +RR D + +Y++ E GY + Sbjct: 40 LKSRGKMKINDIARELEVDERQVRRYRNDLEQAGIYIEYTSERYGGYQYEEQDYLLDLNL 99 Query: 77 PDVLIFAHRSGLAGL-----FPGLDRRLVNAL---LMCDESPCVIAPANPVPSPSGALSF 128 L L D +L+ L E+ +I V + ++ Sbjct: 100 TKEERSVILMALEQLKYDNFICYRDFKLIVDKINCLNERENNDLIHAEYFVKNTKINYNY 159 Query: 129 WR-------LIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVA--EHEGHI 175 R + AI R ++ + G + + P + ++ + Y V E I Sbjct: 160 EREKNIWIDINAAIITRNKIKIKYNSLNTGEKERIVRPYAVFQYKGSMYFVGYCELRQKI 219 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLC 200 F + I + L E F R + Sbjct: 220 REFKISRIMSYEILGEKFERAHNFN 244 >UniRef50_C8X624 Helix-turn-helix type 11 domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X624_NAKMY Length = 335 Score = 55.7 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 64/207 (30%), Gaps = 44/207 (21%) Query: 32 KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMVPD-------- 78 +LA GVS RT+R+D +RL L + GY L S ++ D Sbjct: 25 ELAERLGVSDRTVRKDI-DRLRSLGYPVDAVRGAGGYYELGVGASMPPLLLDEDEAVAVA 83 Query: 79 --VLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALS--------- 127 + + +G+ +L L + V P S Sbjct: 84 VGLRAASGIAGIEETSVRALAKLDAVLPHHLQRQVAAVHEAVVQGPENTGSNVADPVVDA 143 Query: 128 --FWRLIQAITGRRRVTLIAEGRRC---------------ERLAPCRLLIHQQTWYLVAE 170 L AI R V ++ P RL+ Q+ WYLVA Sbjct: 144 GLLTELSAAIRDRVEVRFDYRADPDSALSAASGAASVVDRRQVEPYRLVSWQRRWYLVAR 203 Query: 171 HE--GHIAVFTLDEIHLIQPLQETFRR 195 G A + +D + L P FR Sbjct: 204 DARTGSWAPYRVDWLTLKTPGGRHFRP 230 >UniRef50_A4SCA2 Helix-turn-helix, type 11 domain protein n=7 Tax=Chlorobiaceae RepID=A4SCA2_PROVI Length = 341 Score = 55.7 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 34/221 (15%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR--ERLMYLDLEY----------Q 60 VR+ I +L + K+A F VS ++++RD L++ +EY + Sbjct: 9 VRMQYIDQQLRDNHYPNCTKIAKYFEVSSKSIQRDIDYMRDLLHAPIEYDRKKRGYFYEE 68 Query: 61 SGYCRLRTAGSEMQMVPDVLI---FAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAP 115 G+ L E++ ++ + + + R L V L + + + Sbjct: 69 DGWSYLAATTLELREAEALIATTKVLQQYQGTPYYNEVSRALDKVRQYLPENSAANQLLS 128 Query: 116 ANPVPSPSG----ALSFWRLIQAITGRRRVTLIAEGR---------RCERLAPCRLLI-- 160 + P+ + F + AI R ++T+ L P Sbjct: 129 VYSIEQPTHQAVDSRMFASVEDAIRRRLKITMTYRASYRAASSEAVTERTLHPYMFHYSQ 188 Query: 161 HQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199 + TWYL+ E I F L+ I + + F +S Sbjct: 189 SRDTWYLIGYCELRKDIRTFALNRIRTLSVTEHPFTVPESF 229 >UniRef50_C1I3X2 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3X2_9CLOT Length = 245 Score = 55.3 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 10/125 (8%) Query: 83 AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVT 142 + + GLFP + + N + ++ +A+ ++ + Sbjct: 34 CTLAKIKGLFPEEHIKEIELKSNQISIDLTPWIGNK----DLKSNLEQIKKAMNDKKILR 89 Query: 143 LIA----EGRRCERLAPCRLLIHQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRN 196 + ++ P +L++ + WYL + +F L I I+ ++E+F Sbjct: 90 FNYFDSKGKKSNRKVEPYQLVLKESNWYLQGYCISKQDFRIFKLSRISDIKVIEESFITR 149 Query: 197 DSLCR 201 + + Sbjct: 150 EFNLK 154 >UniRef50_A5TXA7 Possible transcriptional regulator n=2 Tax=Fusobacterium nucleatum RepID=A5TXA7_FUSNP Length = 309 Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 39/231 (16%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLE---------YQSGY 63 +RL + RL+ E + ++K A E V++RT RD + +L + + Y Sbjct: 4 IRLLELYDRLLKNEDIDIKKYAEENKVNIRTAERDIKTIRNFLAKKKKTELIHNSKKKKY 63 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES---------PCVIA 114 T S ++L + + F + L+ ++ S + Sbjct: 64 QLTYTEDSINLTKSEILAISKILLASRAFLKDEISLIVDKIVKQCSSEDDLELIQNLLKN 123 Query: 115 PANPVPSPSGALSF----WRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166 SF W L QAI ++++ + + + P L+ + +Y Sbjct: 124 EKFHYIELQHKKSFINNIWDLGQAIKNKKKIEISYKKMNGKIVKRVIDPVGLMFSEFYFY 183 Query: 167 LVA-------------EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVE 204 L+A + + + ++ +D I L E F R E Sbjct: 184 LLAHIENIDKEKHFDNKDDEYPTIYRVDRIEDFDVLNEKFIPTLYTNRFQE 234 >UniRef50_B1QLR3 HTH domain protein n=9 Tax=Clostridium RepID=B1QLR3_CLOBO Length = 309 Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 74/213 (34%), Gaps = 20/213 (9%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67 RL I+ ++ + +S LA F VS RT+ RD +Y ++ + GY Sbjct: 4 ERLLGILFYIINRDNVSANNLAEHFNVSRRTILRDINTLTLAGIPIYSEVGSKGGYSINP 63 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRR-------LVNALLMCDESPCVIAPANPVP 120 +++ + L L + V + + + + Sbjct: 64 DYRLNEKIIDNANSEYMLLALQSLKSVYGEKKVHETYEKVKHIYSDKNNNHALNIDFSIV 123 Query: 121 SPSGALSFWR--LIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGH 174 + + +++F+ L +AI + V+ R + +L +WY Sbjct: 124 NENRSITFYISMLKEAIQHNKTVSFQYTNLNGDTRIVKCNIIHVLYKWYSWYAFGYDLEK 183 Query: 175 --IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 +F + + ++ + F + + +L++D Sbjct: 184 SDFRMFKIVRMRNLEISEMYFDNDYDVTKLLDD 216 >UniRef50_C1ZFR8 Predicted transcriptional regulator, COG2378 n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZFR8_PLALI Length = 321 Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 34/223 (15%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMY-LDLEYQSGYC----- 64 RL +I L +G + +LA E GVS RT+ RD +E ++ L E + GYC Sbjct: 8 RLLRLIQALQSGRLCNSVQLAEECGVSRRTIFRDISILQEAGIHVLYDEERQGYCMPLRL 67 Query: 65 RLRTAGSEMQMVPDVLIFA-----HRSGLA----------GLFPGLDRRLVNALLMCDES 109 + + + +L+F +G+ + GL R + + ES Sbjct: 68 TIPASQLSLSEAISLLLFCSELSDSTTGIPFQQDARQAAMKILEGLPRSVRETVAEITES 127 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCER-----LAPCRLLIHQQT 164 + + + L+ A+ R ++ + L+P RLL +++ Sbjct: 128 MSIRIDSRN-QLIGSQSLYEVLLSALIRREQIRVRYHSLTEASPLSTLLSPYRLLFSRRS 186 Query: 165 WYLVAEH--EGHIAVFTLDEIHLIQPLQETFR--RNDSLCRLV 203 WY++ + F + + ++ ++ SL R + Sbjct: 187 WYVIGRSSWHRTVRTFNVGRLEQLELAGTFYKIPPRFSLDRYL 229 >UniRef50_Q74H44 Putative uncharacterized protein n=1 Tax=Geobacter sulfurreducens RepID=Q74H44_GEOSL Length = 320 Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 34/210 (16%) Query: 20 SRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERL---MYLDLEYQSGYCRLRTAGSEM 73 S++ G + LA +F ++T +R FR+RL + D + + Sbjct: 15 SQIRNGCYPNASALARKFEFDIKTAQRSIEYFRDRLGAPLDYDASRRGYRYYDPNYQLPV 74 Query: 74 QMVPDVLIFAHRSG-----------LAGLFPGLDRRL---VNALLMCDESP----CVIAP 115 + + + A + L + RL ++ L +P Sbjct: 75 THLSESELVALLASRKLLTDAAAGPLGDELEKVSNRLGALLSNGLKGKINPERAFSFRWN 134 Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVA- 169 P F + + A+ R +T + P ++ + W+L+A Sbjct: 135 GMAASDPVI---FEQAVSALLSCRLLTFCYYSPLAGACTARTVEPHHMINYMGAWHLIAW 191 Query: 170 -EHEGHIAVFTLDEIHLIQPLQETFRRNDS 198 F L + L +E F D Sbjct: 192 CRLRNDWRDFHLARVSLAHLEEEIFSPRDE 221 >UniRef50_D2PY48 Helix-turn-helix type 11 domain protein n=6 Tax=Actinomycetales RepID=D2PY48_9ACTO Length = 331 Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 33/198 (16%) Query: 32 KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMVPD-------- 78 +LA+ VS RT+R D +RL L + +G+ +L ++ D Sbjct: 29 ELASRLNVSTRTIRNDV-DRLRELGYPVDAVRGPAGHYQLGVGAKLPPLLLDDEEAVAVA 87 Query: 79 --VLIFAHRSGLAG----LFPGLDRRL---VNALLMCDESPCVIAPANPVPSPSGALSF- 128 + A SG+ L++ L + + + P N + Sbjct: 88 VGLRTGAGVSGMEESSGRALAKLEQVLPHRLRRQVNAIHTTLSKGPDNTGSNVQDPEVDP 147 Query: 129 ---WRLIQAITGRRRVTLIAEGRRCER-----LAPCRLLIHQQTWYLVAEHE-GHIAVFT 179 + AI + + + P RL+ Q+ WYLVA E G + Sbjct: 148 AVVTTIAAAIRDEHYLRFEYAVPGTDPGFPILVEPYRLVSWQRYWYLVARDESGQWRTYR 207 Query: 180 LDEIHLIQPLQETFRRND 197 +D + L +R Sbjct: 208 VDWMDLRMATGRRYRPRP 225 >UniRef50_D2BDR8 Helix-turn-helix type 11 domain protein n=9 Tax=Actinobacteria (class) RepID=D2BDR8_STRRD Length = 327 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 33/207 (15%) Query: 24 AGETLSVRKLAAEFGVSVRTLRRDFRERL------MYLDLEYQSGYCRLRTAGSE-MQMV 76 ++ +L+ E VSVRT+ RD E L +Y D GY L + + Sbjct: 15 TRGRMTATELSEELEVSVRTVYRDV-EALSSAGVPVYADRGPAGGYRLLDGYRTRLNGLT 73 Query: 77 PDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRL----- 131 + +GL G P + L + P P S + L Sbjct: 74 AEEASSLFLAGLPG--PAAELGLGEVAANAELKLLAALPPEPRFHASRMRERFHLDVPGW 131 Query: 132 -------------IQAITGRRRVTLIAEGRRCERL----APCRLLIHQQTWY-LVAEHEG 173 +A+ +R + + + P L++ +WY + A G Sbjct: 132 YRGADEAPFLGEVSEAVWDQRPLRMTYRRWGPRDVERLAHPYGLVLKGGSWYMVAAVGGG 191 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLC 200 + + I + + F R Sbjct: 192 EPRTYRVSRIIAAEIAEGRFERPGDFE 218 >UniRef50_A7GU32 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillus cereus group RepID=A7GU32_BACCN Length = 303 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 69/221 (31%), Gaps = 28/221 (12%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLE----YQSGYCRLR 67 R+ I+ L+ + +S +LA F VS RT+ RD + + G+ + Sbjct: 4 ERMLSILIYLLQKDIISAEELANTFEVSKRTIYRDIDALSAIGIPIISYLGKNGGFTLID 63 Query: 68 TAGSEMQMVPDVLIFAHRSGL---AGLFPGLDRRLVNALL--------MCDESPCVIAPA 116 + + GL + LF ++ + + V Sbjct: 64 NYRLDKFTFSEEEKRFLLEGLTLKSELFDDEQLSILQKKIEVLKETKRDHTSNMTVSFST 123 Query: 117 NPVPSPSG--ALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVA- 169 + +++ I +++ + + + P +L +WYL A Sbjct: 124 LHRETIEEETKQKVKKVLVMIEKEQKLQISYVSQTGHLSKRIIQPLKLNFMNGSWYLEAV 183 Query: 170 -EHEGHIAVFTLDEIHLIQPLQET----FRRNDSLCRLVED 205 + VF L I + + + + R + ++ Sbjct: 184 CVLRKALRVFKLTRIRRMDIIDDNTEIVYDRKPEFIKERKE 224 >UniRef50_UPI0001C30F15 Helix-turn-helix type 11 domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30F15 Length = 220 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 73/200 (36%), Gaps = 20/200 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQS-GYCRLRT 68 RL ++ L A T++ +LA E GVS RT+ RD E L L+ E+ G R+ Sbjct: 5 RLLTLVGLLQARGTMTAEQLAGELGVSRRTVYRDV-EVLATAGVRLEAEHGPAGGYRIPR 63 Query: 69 AGSEMQ---MVPDV--LIFAHRSGLAGLFPGLDR-------RLVNAL-LMCDESPCVIAP 115 PDV L A + P LD +L+ AL Sbjct: 64 DTVRTLLALTGPDVEALTLARIVA-GSVEPALDAGAEHAEAKLLAALGPDARARAARTRR 122 Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175 V + A + + A+ +R V L A G L ++ W+LVA+ + Sbjct: 123 RFLVRETAPAPALGIAMHAVRDQRWVRLSAPGEAARELRALGMVHDDDGWHLVADDGARL 182 Query: 176 AVFTLDEIHLIQPLQETFRR 195 LD+ + L F Sbjct: 183 CALLLDDSTDLVALDARFEP 202 >UniRef50_A6C2W1 GntR family transcriptional regulator n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C2W1_9PLAN Length = 329 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 32/213 (15%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSGYCRLRTAG 70 RL +I+ L +G + +LA+E VS RT+ RD +E +Y+ + + +L Sbjct: 8 RLLRLIALLQSGRVYNSAQLASECEVSRRTVFRDLKTLQESGIYVLYDDEKQGYQLPWRT 67 Query: 71 S---EMQMVPDVLIFAHRS-------------GL-----AGLFPGLDRRLVNALLMCDES 109 + +VL S G+ A + L L ++ +S Sbjct: 68 IVPFKDLTFEEVLALFVLSQDLDKTIVGLPLDGIAHTASAKILSSLPDALREQVIEAAQS 127 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCER--LAPCRLLIHQQT 164 I PS L + +++A+T ++ V + ++ L+P +L + Sbjct: 128 IS-IWLTPCNPSLRNELHYKTILKAVTSKQNVRIQYVCPNEQKTASTMLSPYHMLYSNRQ 186 Query: 165 WYLVAEHE--GHIAVFTLDEIHLIQPLQETFRR 195 WY+V I VF + ++ + L E F++ Sbjct: 187 WYVVGRSSVDRGIKVFPIQKMIKSELLDEKFKK 219 >UniRef50_D1CH46 Helix-turn-helix type 11 domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CH46_THET1 Length = 320 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 37/222 (16%) Query: 27 TLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG---------YCRLRTAGSEMQMV 76 ++ R+LA + VS RT+ RD + + + Q G L G + + Sbjct: 18 KVTARELAEKLEVSERTIHRDMEALGMAGVPIYAQRGAGGGWALLPGYELDVPGIGPEEL 77 Query: 77 PDVL-----IFAHRSGLAGLFPGLDRRLVNALLMCDESPCV------IAPAN----PVPS 121 +L GL + + L + + P Sbjct: 78 EVLLLGHSPKLLSDLGLGSKLEAAYGK-LALALQPQHRESLDRVRERLYVDPVGWRPREE 136 Query: 122 PSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 L L +A+ R L + P L++ +WYLV EG + Sbjct: 137 AVDLLPT--LYRAVWEERSARLRYRRADGQEVERWMQPLGLVVKGGSWYLVGAVEGEVRT 194 Query: 178 FTLDEIHLIQPLQETFRRNDSLCR----LVEDPVFIQALPHF 215 + + + ++ L + F R F ++LP + Sbjct: 195 YRVSRMASVE-LGQHFDRPAGFDLARYWRDSQERFQESLPRY 235 >UniRef50_UPI000051035F putative DeoR family transcriptional regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000051035F Length = 314 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 18/196 (9%) Query: 12 AVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYC----- 64 A RL I L A ++ LA V+ RT+ RD + + + ++G Sbjct: 5 AARLVSEIVILSARSVPITAANLAERLEVTERTVYRDLGDLSRMGVPVVTEAGPGGGISL 64 Query: 65 ---RLRTAGSEMQMVPDVL----IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117 + D + A G A ++++ S ++ + Sbjct: 65 LGTWTSPLSGMTRDELDSVLIGGAAAADLGFARELATAREKILSETESVFSSNVLVDGPD 124 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWYLVAE-HEG 173 + + ++ A+ R + G R P L++ WYL+A+ G Sbjct: 125 WFMTHERPEALSVIVTALRSHRGLQFRYAARTGSRLRTAIPLGLVVKAGRWYLIAQPPGG 184 Query: 174 HIAVFTLDEIHLIQPL 189 + + + I Sbjct: 185 RPRTYRVSRMTAIALR 200 >UniRef50_B2A7V3 Helix-turn-helix type 11 domain protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7V3_NATTJ Length = 312 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 32/204 (15%) Query: 31 RKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSGYCRLRTAGSEMQMV-PD-------V 79 +LA EF VSVRT+RRD + L ++ G + PD + Sbjct: 25 NELAQEFDVSVRTVRRDVSVLEQ--AGLPVQNYHGLRFMSDVELPKVQFEPDEVILLLLM 82 Query: 80 LIFAHRSGLA-----GLFPGLDRRL---VNALLMCDESPCVIAPANPVPSPSGALSFWRL 131 + F R + L+ L + L + + +I P + G R Sbjct: 83 VNFISRYEIDNQIPNSLYEKLKQYLPEKMMDKYQHIQKSVLIHPHDNEQD--GRNIVRRF 140 Query: 132 IQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDEIH 184 I + RV + + + P + ++ WY+V H+ +F + I Sbjct: 141 KDIIECKNRVKIYYQSHSSKQENWRMVDPYGVFFKKRAWYMVGYCHRHLDIRIFKCNRIK 200 Query: 185 LIQPLQETF-RRND-SLCRLVEDP 206 I+ L + + ND L + D Sbjct: 201 KIKSLPDMYDIPNDFDLEEFLSDS 224 >UniRef50_C8QWX3 Transcriptional regulator-like protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWX3_9DELT Length = 334 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 80/236 (33%), Gaps = 43/236 (18%) Query: 32 KLAAEFGVSVRTLRR-------DFRERL---------MYLDLEYQSGYCRLRTAGS-EMQ 74 LAAEFG+S RT R +F L YLD ++Q L + Sbjct: 27 ALAAEFGISERTAGRAIEAMRVEFDAPLHYVHARRGYTYLDDQFQLPPFWLSQEEIFAVL 86 Query: 75 MVPDVLIFAHRSGLAGLFPGLDRRLVNAL----LMCDESPCVIAPANPVPSPSGALSFWR 130 + ++L ++ L+R+L+ + L ++ + + P +P+ A F Sbjct: 87 LARNLLSCCADGLISQAIASLNRKLLQQIADHGLAAEKFDQLFSATWPGYAPAPAEVFRP 146 Query: 131 LIQAITGRRRVTLIA-----EGRRCER--LAPCRLLIHQQTWYLVAEHEGHI--AVFTLD 181 +A+ +R + + P L +Q W L+A F L Sbjct: 147 ATKALLEQRLFAFDYSSPLDQNGNYHSRLVEPHHLQHYQGNWVLLARCRKRCDWRKFVLS 206 Query: 182 EIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS------LLTFVPADSP 231 + Q ETF + ++ L I ++ F PA +P Sbjct: 207 RMQNPQISTETFTPHPR-------REWLPHLEGAYGIFQGRSPETAIIRFTPARAP 255 >UniRef50_C9YTR3 Putative transcriptional regulator n=8 Tax=Streptomyces RepID=C9YTR3_STRSW Length = 333 Score = 54.5 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 47/230 (20%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66 A RL ++ L + +++ +LA E VS RT+ RD + +Y D ++G RL Sbjct: 3 AARLIKMVLLLQSRPSMTAAELARELEVSERTVTRDAQALSEAGVPVYAD-RGRAGGYRL 61 Query: 67 -----------------------RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL 103 + D A A L P + Sbjct: 62 IGGYRTRLTGLARSEAEALFLSGVPGALREMGLEDAASAARLKVSAALLPS-----LRDA 116 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLI 160 + + P + A+ RR+ L P L++ Sbjct: 117 SRTAAQRFHLDAPSWFQEPKTPELLPAVADAVWDDRRIVARYRRGDVEVGRELEPYGLVL 176 Query: 161 HQQTWYLVAEH----------EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 WYL A +G + +D ++ + F R++ Sbjct: 177 KAGVWYLCARVPAAGDGTGEGDGPFRTYRIDRFLSVEDGGDRFARDEGFD 226 >UniRef50_Q7MF56 Predicted transcriptional regulator n=10 Tax=Vibrio RepID=Q7MF56_VIBVY Length = 228 Score = 54.5 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 30/214 (14%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY--LDLEYQSGY 63 + +RL L+L+ S+ A ++ ++LA VS RT+ RD + L++ + ++ ++G Sbjct: 2 SKSERLFELLTLLRSKRYA---VTAKQLAETMEVSERTIYRDIQS-LIHSGVPIQGEAGV 57 Query: 64 CRLRTAG--SEMQMVPDVLIFAHRSGL-------AGLFPGLDR----RLVNALLMCDESP 110 L +G M + + A G+ R ++++ L + Sbjct: 58 GYLLQSGSHLPPLMFTEKEMMALELGMRMVRAWSDAELADASRSASIKILSVLPDKLKQQ 117 Query: 111 ----CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQ 162 +I P S + L AI +V+L + ++ P Sbjct: 118 VEDFPLIVPEFHTHSETAKRG-QLLRHAIEHHFKVSLDYQDENGQITERKIQPLGQFFWG 176 Query: 163 QTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFR 194 + W LVA E F LD I ++ E F Sbjct: 177 KVWTLVAWCELRQDYRQFRLDRIQALRMHDEEFE 210 >UniRef50_B8CYA6 Helix-turn-helix type 11 domain protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYA6_HALOH Length = 327 Score = 54.5 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 39/222 (17%) Query: 13 VRLSLIISRLVAG-ETLSVRKLAAEFGVSVRTLRRDFR-------------ERLMYLDLE 58 R+ +I+ L +G + R LA FGVS RT+ RD + E+ Y Sbjct: 9 YRILKMINLLSSGVKRWRARDLAELFGVSPRTIYRDIQYMEQMHIPVIKDEEKNTYA--I 66 Query: 59 YQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD------RRLVNALLMC------ 106 + Y + E M L+ + ++P + +++N+L Sbjct: 67 MEDFYFKPPRMTREEAM---ALLLVAHAFEDEVYPYREELNNAVSKIINSLPSSVKKVLL 123 Query: 107 DESPCVIAPANPVPSPSGALSFWRLI-QAITGRRRVTLIAEG-----RRCERLAPCRLLI 160 D ++ V + +I +I + V + R ++ P ++ + Sbjct: 124 DLEDRILFHQGAVVDMTKHRDTINIINDSIASNQSVIINYYSLSSDMLRERKVDPYKIFV 183 Query: 161 HQQTWYLVAEHEGHIAV--FTLDEIHLIQPLQETFRRNDSLC 200 +YL+A V F +D I I+ + + D Sbjct: 184 QDGAYYLIAYCHLRCNVLLFRVDRIRNIKVTSDKYIIPDDFD 225 >UniRef50_UPI0001C317F2 transcriptional regulator protein-like protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317F2 Length = 687 Score = 54.2 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 32/223 (14%) Query: 7 RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66 R RL S++I+ AGE + ++ +S + L+ D + + + +G L Sbjct: 376 RFARLVTLASILITAGRAGERIPAAEVCERLQISEQELQEDIGVLNV---VNFGAGSYVL 432 Query: 67 RTAGSEMQMVP-DVLIFA-HRSGLAGLFPGLDRRLVNAL-----------LMCDESPCV- 112 E M+ D + + A L P + LV A+ L V Sbjct: 433 YAEVQEDGMIEADPEAYGDSFARPARLLPVEAKALVAAIDLIGEHIPEDSLTSVRRKVVD 492 Query: 113 -IAPANPVPS---PSGALSFWRLIQ----AITGRRRVTLIAEGRRC-----ERLAPCRLL 159 + +G + + AI R +T+ + P L+ Sbjct: 493 ALGHDPIREGLQIVTGGGGDADIARSVSTAIVSNRLLTIEYYKENEDVFSERTVEPYALM 552 Query: 160 IHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 ++ WY+ A G + F LD + Q F + Sbjct: 553 NGREGWYVAAYDPARGGVRHFRLDRVKRAAIEQTRFTPRAEVD 595 Score = 39.5 bits (91), Expect = 0.098, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 130 RLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQTWYLVAE--HEGHIAVFTLDE 182 ++ AI R+ + + R+ P +LL +YL+ I VF L Sbjct: 159 KIETAIFRRKTIVFDYYTMQRDDLGTRRVDPYQLLFEGGQFYLLGRAHERDAIRVFRLSR 218 Query: 183 IH 184 I Sbjct: 219 IR 220 >UniRef50_A9DPV5 Transcriptional regulator, DeoR family protein n=2 Tax=Flavobacteriales RepID=A9DPV5_9FLAO Length = 258 Score = 54.2 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 28/211 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCRLRTA 69 RL I++ L + L+ +LA ++ VSVRT+ RD R+ + +E + GY + Sbjct: 30 RLISILTLLRSKRLLTATELAEKYNVSVRTIYRDIRKLEEAGVPVYTIEGR-GYSLIENY 88 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALS-- 127 + A + + D VN + + Sbjct: 89 TIAPVQFTEKQANALITAEHIINQSKDASFVNDFKEALIKIKSVFKTSVQEKSEILSDKI 148 Query: 128 --------------FWRLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQTWYLV 168 + AIT V + + ++ PC + W L+ Sbjct: 149 HVFNWKLEETASNALSEIQIAITNFNCVEIHYKKANDYQISIRKIEPCAMYSTDNKWILI 208 Query: 169 A--EHEGHIAVFTLDEIHLIQPLQETFRRND 197 A + F +D I + L+E F Sbjct: 209 AWCHLRNELRAFRVDRIQSFKILEEKFEDRK 239 >UniRef50_Q65MX4 Putative uncharacterized protein n=2 Tax=Bacillus RepID=Q65MX4_BACLD Length = 315 Score = 54.2 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 30/202 (14%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66 A RL+ +I + + +V +LA EFGVS RT+ RD +E +Y + GY L Sbjct: 4 AKRLNEMIMMVNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGYQVL 63 Query: 67 RTAGSEMQMVPD---VLIF---------------AHRSGLAGLFPGLDRRLVNALLMCDE 108 + + IF A + + F + + + Sbjct: 64 NERILPPIAFSENEAISIFFAIDALKHYISLPFDAQYASIKKKFYLNLSGDIRDAIDSMK 123 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTW 165 P L++A ++ + + E + P + +Q W Sbjct: 124 DRVAFYT--PYEQTDDIPVLKVLLEAAVQQKVLIIEYEANGASSKRSIQPIGIYANQGKW 181 Query: 166 YLVAE--HEGHIAVFTLDEIHL 185 Y A +F D I Sbjct: 182 YCPAYCFLRKDYRIFRCDRIKR 203 >UniRef50_B9DII5 Putative uncharacterized protein n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DII5_STACT Length = 286 Score = 54.2 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 26/203 (12%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGS 71 + R+ I +RL+ GET+ L+ VS ++++RD R D Y+S Y R Sbjct: 4 STRVLNIFTRLLNGETVRKSDLSEFGNVSTKSIQRDVR---TINDFFYESEYWNNRNTEI 60 Query: 72 EMQMV--PDVLIFAHRSG---------LAGLFPGLDRRLVNALLMCDESPCV-------- 112 + + F +G + L P L + N ++ + Sbjct: 61 VYKKNGYELITNFNSLNGLALLGLMVKIKSLTPILHVDVYNLFRREIQNLRIEDRKILSE 120 Query: 113 IAPANPVPSPSGALSFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLI-HQQTWYLVAE 170 + + LI QAI+ + V + +GR E + P + H W+ E Sbjct: 121 MLKHFKKRDETFPGEILMLIEQAISQKSLVWMKFKGRNIE-VKPLSTMYMHYDYWF-TYE 178 Query: 171 HEGHIAVFTLDEIHLIQPLQETF 193 +E + + I + TF Sbjct: 179 YEKTVYTERVRHIENFKVSNHTF 201 >UniRef50_A6VRZ4 Helix-turn-helix type 11 domain protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VRZ4_MARMS Length = 231 Score = 54.2 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 25/209 (11%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG-Y 63 RR DRL +L I+ R+ ++ KLA E VS RT+ RD + + + +E ++G Sbjct: 2 RRADRL-FQLIQILRRVNR--PVTAAKLAEELEVSKRTVYRDIADLVGQRVPIEGEAGLG 58 Query: 64 CRLRT-AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES------PCVI--- 113 L M + A G+ + D+ + N+ P I Sbjct: 59 YTLSEFYNMPPLMFTQDELEALVLGVQLVQSLPDKTIGNSAKDVYAKIRDVIPPSFITTL 118 Query: 114 ----APANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165 P L +AI +++ + E + + P L + Sbjct: 119 SDAGVRIKPRELEPEKQDTRYLREAIRANKKIRITYSDRDENKSERVVWPIMLGYDEAYC 178 Query: 166 YLVA--EHEGHIAVFTLDEIHLIQPLQET 192 L+A E F +D I ++ L + Sbjct: 179 LLIAWCEQRQQYRHFRVDRIRHMERLDIS 207 >UniRef50_C1YQ17 Predicted transcriptional regulator, COG2378 n=2 Tax=Actinobacteria (class) RepID=C1YQ17_NOCDA Length = 322 Score = 54.2 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 31/214 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRT 68 R+ ++S L G LAA VS R+LRRD +RL L L G+ RL Sbjct: 7 RMLRLLSLLQTGRAWPGADLAAALEVSPRSLRRDI-DRLRELGYAVESLRGPGGHYRLAA 65 Query: 69 AG-SEMQMVPDVLIFAHRSGLAGLFPGL----------DRRL--VNALLMCDESPCVIAP 115 ++ D + A GL + GL +R L + +L + A Sbjct: 66 GRAVPPLLLEDDEVVAAALGLRIVAAGLGGVEGVEESAERALARLGRVLPSRLARRAKAM 125 Query: 116 ANPVPSPSG------ALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTW 165 A V L +A+ V ++ G + P RL++ + W Sbjct: 126 AAAVEPEQRVWPGVRTRVLTDLGEAVADGHWVRMLHRGGDGRELRRKADPYRLVLSGRRW 185 Query: 166 YLVA--EHEGHIAVFTLDEIHLIQPLQETFRRND 197 YL A F LD I + P + F R + Sbjct: 186 YLFAWDRERDDWRTFRLDRITGVTPTRAPFTRRE 219 >UniRef50_A9WUI5 Transcriptional regulator n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WUI5_RENSM Length = 313 Score = 54.2 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 74/226 (32%), Gaps = 51/226 (22%) Query: 31 RKLAAEFGVSVRTLRRDFRERLMYL--DLE---YQSGYCRLRTAGSEMQMVPD------- 78 LA + VS+RTLRRD ERL L +E G +L S +V D Sbjct: 14 NDLAEKLEVSLRTLRRDV-ERLRELGYPVEARRGTDGGYQLAAGASLPPLVVDDEEAVAL 72 Query: 79 ----------VLIFAHRSGLAGL------FPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 + + ++ L P RR V L P AP V + Sbjct: 73 TIGLRLAAQGAINGIEEASISALAKVIQVMPARLRRRV-EALQLATVPSGSAPGPVVDAT 131 Query: 123 SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGHIA-- 176 + QA R+ + + P RL+ Q WYLVA Sbjct: 132 VLTT----IAQACRDEERLDFSYTAHNGEQTERHVEPRRLVAVGQRWYLVAYDLTRHDWL 187 Query: 177 VFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 F LD + + E FR I AL F+Q+SL Sbjct: 188 SFRLDRLREPKNTAERFRSRK-----------IPALNAAEFVQNSL 222 >UniRef50_Q1DCK6 Putative uncharacterized protein n=2 Tax=Cystobacterineae RepID=Q1DCK6_MYXXD Length = 309 Score = 53.8 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 6/83 (7%) Query: 131 LIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDEIH 184 L +AI R VT + P LL H+ WYL +F LD + Sbjct: 146 LTRAIIERLEVTFGYASPGRSPEPRTVRPYELLSHRGQWYLQGYCHTRQDARLFRLDRME 205 Query: 185 LIQPLQETFRRNDSLCRLVEDPV 207 I +F+ V +P Sbjct: 206 DILVTDVSFQPPADARADVPNPA 228 >UniRef50_Q0S1T7 Probable transcriptional regulator, DeoR family protein n=2 Tax=Rhodococcus RepID=Q0S1T7_RHOSR Length = 320 Score = 53.8 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 68/212 (32%), Gaps = 23/212 (10%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM----YLDLEYQSGYCRL- 66 A RL + + A ++ ++A E VSV T RRD + G L Sbjct: 3 ADRLVATLLLMQARGRVTAAEVADELDVSVATARRDLEALSAAGIPVYPQSGRGGGWSLV 62 Query: 67 --RTAGSEMQMVPDVLIFAHRSG----LAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 + G ++G R+LV AL + A + Sbjct: 63 GGARTDLSGLSATEAQALFLLVGPAAAVSGEAKAALRKLVRALPQTFRADAEAAATATMI 122 Query: 121 SPSGALSFWR--------LIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168 P+ R L A+ RR+V LI R + P L+ WYL+ Sbjct: 123 DPTRWGERDRRRPEMVDLLQAAVIRRRKVRLIYTNSARQRSERLVDPWGLVDKDDIWYLL 182 Query: 169 AEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 A E F +D I + ++ R D Sbjct: 183 AGTERGQRTFRVDRIVHAESTEQPGERPDDFT 214 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P52133 Uncharacterized HTH-type transcriptional regulat... 226 3e-58 UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providenc... 196 6e-49 UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providenc... 193 4e-48 UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yers... 190 2e-47 UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enter... 189 4e-47 UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteria... 185 1e-45 UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Provide... 185 1e-45 UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia c... 185 1e-45 UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Cam... 184 1e-45 UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherich... 176 4e-43 UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax... 175 1e-42 UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Provide... 173 4e-42 UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax... 173 6e-42 UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter ... 168 2e-40 UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 T... 166 4e-40 UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-tu... 166 7e-40 UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibri... 159 6e-38 UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax... 159 8e-38 UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Ta... 154 3e-36 UniRef50_C6SP18 Putative uncharacterized protein n=2 Tax=Strepto... 152 9e-36 UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobac... 151 2e-35 UniRef50_A6VRC7 Helix-turn-helix type 11 domain protein n=3 Tax=... 144 2e-33 UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibr... 144 2e-33 UniRef50_B2T6R2 Helix-turn-helix type 11 domain protein n=4 Tax=... 141 2e-32 UniRef50_B2JN46 Helix-turn-helix type 11 domain protein n=4 Tax=... 141 3e-32 UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 ... 140 4e-32 UniRef50_Q5WCJ1 Transcriptional regulator n=1 Tax=Bacillus claus... 139 5e-32 UniRef50_C0EAB2 Putative uncharacterized protein n=1 Tax=Clostri... 139 7e-32 UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp.... 138 1e-31 UniRef50_B1BVT1 Transcriptional regulator, DeoR family n=3 Tax=B... 138 2e-31 UniRef50_Q65LG5 Hypothetical DNA-binding protein n=1 Tax=Bacillu... 137 2e-31 UniRef50_D1CGQ4 Helix-turn-helix type 11 domain protein n=1 Tax=... 137 3e-31 UniRef50_A9AWW0 Helix-turn-helix type 11 domain protein n=1 Tax=... 137 3e-31 UniRef50_A7GBR0 Putative uncharacterized protein n=10 Tax=Bacter... 137 4e-31 UniRef50_C6D6M2 Helix-turn-helix type 11 domain protein n=1 Tax=... 136 5e-31 UniRef50_C1IA92 Transcription regulator n=1 Tax=Clostridium sp. ... 136 6e-31 UniRef50_B2V022 DeoR-family transcriptional regulator n=5 Tax=Cl... 136 6e-31 UniRef50_C0ZCT1 Putative transcriptional regulator n=1 Tax=Brevi... 135 9e-31 UniRef50_A6P211 Putative uncharacterized protein n=5 Tax=Bacteri... 135 1e-30 UniRef50_C0CTB1 Putative uncharacterized protein n=4 Tax=Firmicu... 135 1e-30 UniRef50_B0MJK4 Putative uncharacterized protein n=1 Tax=Anaeros... 134 2e-30 UniRef50_UPI0001C37EC6 helix-turn-helix type 11 domain-containin... 134 2e-30 UniRef50_Q9RY95 Repressor protein, putative n=1 Tax=Deinococcus ... 134 2e-30 UniRef50_C9AAC3 Transcriptional regulator n=3 Tax=Enterococcus c... 134 3e-30 UniRef50_Q0AX84 YobV n=1 Tax=Syntrophomonas wolfei subsp. wolfei... 133 4e-30 UniRef50_A8S168 Putative uncharacterized protein n=1 Tax=Clostri... 133 4e-30 UniRef50_Q92EJ5 Lin0464 protein n=2 Tax=Firmicutes RepID=Q92EJ5_... 133 5e-30 UniRef50_UPI0001C425E1 hypothetical protein BpOF4_16355 n=1 Tax=... 133 5e-30 UniRef50_Q5WD79 Transcriptional regulator n=5 Tax=Bacillus RepID... 133 5e-30 UniRef50_Q9S3S5 Putative uncharacterized protein n=1 Tax=Enteroc... 133 5e-30 UniRef50_C6PMV9 Helix-turn-helix type 11 domain protein n=1 Tax=... 132 7e-30 UniRef50_B1CBH7 Putative uncharacterized protein n=1 Tax=Anaerof... 132 7e-30 UniRef50_A9KRE5 Helix-turn-helix type 11 domain protein n=1 Tax=... 132 9e-30 UniRef50_C4DT59 Predicted transcriptional regulator, COG2378 n=1... 132 1e-29 UniRef50_C6CXH2 Helix-turn-helix type 11 domain protein n=2 Tax=... 132 1e-29 UniRef50_A6F2P0 Transcriptional regulator, DeoR family protein n... 132 1e-29 UniRef50_A7VYA2 Putative uncharacterized protein n=1 Tax=Clostri... 131 1e-29 UniRef50_B8FW42 Helix-turn-helix type 11 domain protein n=3 Tax=... 131 1e-29 UniRef50_C7NAI6 Helix-turn-helix type 11 domain protein n=3 Tax=... 131 2e-29 UniRef50_Q8F269 Transcription regulator n=2 Tax=Leptospira inter... 131 2e-29 UniRef50_B1HUW4 YobV n=2 Tax=Bacillaceae RepID=B1HUW4_LYSSC 131 2e-29 UniRef50_B9YCC8 Putative uncharacterized protein n=1 Tax=Holdema... 131 2e-29 UniRef50_D1PN27 Transcriptional regulator, DeoR family n=3 Tax=C... 131 3e-29 UniRef50_B0N590 Putative uncharacterized protein n=2 Tax=Bacteri... 130 3e-29 UniRef50_C9XKH2 DeoR-family transcriptional regulator n=4 Tax=Cl... 130 3e-29 UniRef50_B0MGX9 Putative uncharacterized protein n=2 Tax=Clostri... 130 5e-29 UniRef50_A4FF91 DeoR-family transcriptional regulator n=17 Tax=B... 129 5e-29 UniRef50_UPI0001789548 Helix-turn-helix type 11 domain protein n... 129 6e-29 UniRef50_Q73PY5 Transcriptional regulator, putative n=1 Tax=Trep... 129 6e-29 UniRef50_C4FVK8 Putative uncharacterized protein n=2 Tax=Catonel... 129 7e-29 UniRef50_B8FUA6 Helix-turn-helix type 11 domain protein n=3 Tax=... 129 7e-29 UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Provide... 129 8e-29 UniRef50_A4XCA7 Helix-turn-helix, type 11 domain protein n=7 Tax... 129 1e-28 UniRef50_C6D7L1 Helix-turn-helix type 11 domain protein n=1 Tax=... 128 1e-28 UniRef50_A3CLQ0 Transcriptional regulator, putative n=3 Tax=Stre... 128 2e-28 UniRef50_C6CRF1 Helix-turn-helix type 11 domain protein n=1 Tax=... 128 2e-28 UniRef50_C9NKS1 Helix-turn-helix type 11 domain protein n=5 Tax=... 128 2e-28 UniRef50_C5EHW4 Helix-turn-helix type 11 domain-containing prote... 128 2e-28 UniRef50_D0MGR2 Helix-turn-helix type 11 domain protein n=1 Tax=... 127 2e-28 UniRef50_A6LYP1 Helix-turn-helix, type 11 domain protein n=1 Tax... 127 2e-28 UniRef50_B3PHR5 Predicted transcriptional regulator n=1 Tax=Cell... 127 3e-28 UniRef50_D2PM08 Helix-turn-helix type 11 domain protein n=2 Tax=... 127 3e-28 UniRef50_C3L2F0 Transcription regulator n=4 Tax=Clostridium RepI... 127 4e-28 UniRef50_A8MEN8 Helix-turn-helix type 11 domain protein n=14 Tax... 127 4e-28 UniRef50_A9AUR2 Helix-turn-helix type 11 domain protein n=1 Tax=... 126 5e-28 UniRef50_UPI0001789485 Helix-turn-helix type 11 domain protein n... 126 5e-28 UniRef50_C2U625 Helix-turn-helix type 11 domain protein n=2 Tax=... 126 7e-28 UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 T... 126 8e-28 UniRef50_D2BDS4 DeoR family transcriptional regulator n=2 Tax=Ac... 126 8e-28 UniRef50_C6PV47 Helix-turn-helix type 11 domain protein n=2 Tax=... 126 9e-28 UniRef50_D2QLY3 Helix-turn-helix type 11 domain protein n=1 Tax=... 125 1e-27 UniRef50_A4W669 Regulatory protein, DeoR n=3 Tax=Enterobacteriac... 125 1e-27 UniRef50_D2QV53 Helix-turn-helix type 11 domain protein n=1 Tax=... 125 1e-27 UniRef50_C5REL4 Helix-turn-helix type 11 domain protein n=1 Tax=... 125 1e-27 UniRef50_UPI0001BC5E8A helix-turn-helix, type 11 domain-containi... 124 2e-27 UniRef50_B8DCU5 HTH domain family n=6 Tax=Listeria monocytogenes... 124 3e-27 UniRef50_Q73PA8 Transcriptional regulator, putative n=2 Tax=Bact... 124 3e-27 UniRef50_B2A042 Helix-turn-helix type 11 domain protein n=1 Tax=... 124 3e-27 UniRef50_C5BNS8 HTH domain protein n=2 Tax=Gammaproteobacteria R... 123 4e-27 UniRef50_B1C6Z1 Putative uncharacterized protein n=1 Tax=Anaerof... 123 4e-27 UniRef50_A9KM28 Helix-turn-helix type 11 domain protein n=2 Tax=... 123 5e-27 UniRef50_Q7MF56 Predicted transcriptional regulator n=10 Tax=Vib... 123 5e-27 UniRef50_B4D3V6 Helix-turn-helix type 11 domain protein n=1 Tax=... 123 6e-27 UniRef50_A4C3H1 Predicted transcriptional regulator n=2 Tax=Gamm... 123 6e-27 UniRef50_A0AFG8 Complete genome n=16 Tax=Listeria RepID=A0AFG8_L... 122 7e-27 UniRef50_B7HZL2 HTH domain family n=31 Tax=Bacillus RepID=B7HZL2... 122 8e-27 UniRef50_B5HKG2 Truncated DeoR-family transcriptional regulator ... 122 8e-27 UniRef50_Q7X2G0 Putative repressor n=3 Tax=Streptomyces RepID=Q7... 122 9e-27 UniRef50_Q0S1T7 Probable transcriptional regulator, DeoR family ... 122 9e-27 UniRef50_B1C2N9 Putative uncharacterized protein n=1 Tax=Clostri... 122 1e-26 UniRef50_Q11X99 Transcriptional regulator, DeoR family n=2 Tax=S... 122 1e-26 UniRef50_Q0S564 Possible transcriptional regulator n=4 Tax=Rhodo... 122 1e-26 UniRef50_A4J6Q1 Transcriptional regulator-like protein n=2 Tax=P... 122 1e-26 UniRef50_A4BKA3 Predicted transcriptional regulator n=1 Tax=Rein... 122 1e-26 UniRef50_C4RGC2 Putative uncharacterized protein n=1 Tax=Micromo... 122 1e-26 UniRef50_C5BZX6 Helix-turn-helix type 11 domain protein n=2 Tax=... 121 1e-26 UniRef50_A8LFK5 Helix-turn-helix type 11 domain protein n=5 Tax=... 121 1e-26 UniRef50_A5I226 DeoR-family transcriptional regulator n=13 Tax=C... 121 1e-26 UniRef50_Q12H80 Helix-turn-helix, type 11 n=7 Tax=Proteobacteria... 121 2e-26 UniRef50_B6R343 Helix-turn-helix, type 11 domain protein n=1 Tax... 121 2e-26 UniRef50_C5BVH8 Helix-turn-helix type 11 domain protein n=1 Tax=... 121 2e-26 UniRef50_C0C4Y8 Putative uncharacterized protein n=1 Tax=Clostri... 121 2e-26 UniRef50_A1SPT5 Helix-turn-helix, type 11 domain protein n=2 Tax... 121 2e-26 UniRef50_A0QS56 DeoR-family protein transcriptional regulator n=... 121 2e-26 UniRef50_D0RTY4 DeoR-family transcriptional regulator n=3 Tax=St... 121 2e-26 UniRef50_C0ZJQ9 Putative transcriptional regulator n=1 Tax=Brevi... 121 2e-26 UniRef50_A8FE45 Possible transcriptional regulator n=2 Tax=Bacil... 121 2e-26 UniRef50_C1CY87 Putative transcriptional regulator n=1 Tax=Deino... 121 2e-26 UniRef50_C6D1B9 Helix-turn-helix type 11 domain protein n=1 Tax=... 121 3e-26 UniRef50_C6J3L6 Putative uncharacterized protein n=1 Tax=Paeniba... 121 3e-26 UniRef50_Q65L70 Hypothetical DNA-binding protein n=1 Tax=Bacillu... 121 3e-26 UniRef50_B4UYC1 Helix-turn-helix type 11 domain containing prote... 120 3e-26 UniRef50_C0Z5Y8 Putative transcriptional regulator n=1 Tax=Brevi... 120 4e-26 UniRef50_D1ARJ4 Helix-turn-helix type 11 domain protein n=1 Tax=... 120 4e-26 UniRef50_A6WLL6 Helix-turn-helix type 11 domain protein n=16 Tax... 119 6e-26 UniRef50_O34920 Uncharacterized HTH-type transcriptional regulat... 119 7e-26 UniRef50_D2Q2S8 Helix-turn-helix type 11 domain protein n=2 Tax=... 119 8e-26 UniRef50_D2B3I6 Helix-turn-helix, type 11 n=2 Tax=Actinomycetale... 118 1e-25 UniRef50_A3CLM4 Putative uncharacterized protein n=2 Tax=Strepto... 118 1e-25 UniRef50_B5GB15 DeoR-family protein transcriptional regulator n=... 118 2e-25 UniRef50_C9YTR3 Putative transcriptional regulator n=8 Tax=Strep... 118 2e-25 UniRef50_D1CH46 Helix-turn-helix type 11 domain protein n=1 Tax=... 118 2e-25 UniRef50_C0CXX2 Putative uncharacterized protein n=1 Tax=Clostri... 118 2e-25 UniRef50_D2B9H3 DeoR family transcriptional regulator n=3 Tax=Ac... 118 2e-25 UniRef50_C8WKG8 Helix-turn-helix type 11 domain protein n=1 Tax=... 118 2e-25 UniRef50_C7PP77 Helix-turn-helix type 11 domain protein n=3 Tax=... 118 2e-25 UniRef50_C0ZIU8 Putative uncharacterized protein n=2 Tax=Bacilla... 118 2e-25 UniRef50_C7Q8N4 Helix-turn-helix type 11 domain protein n=12 Tax... 117 2e-25 UniRef50_D2Q3M3 Helix-turn-helix type 11 domain protein n=1 Tax=... 117 2e-25 UniRef50_C2G2T1 Helix-turn-helix, type 11 domain protein n=2 Tax... 117 2e-25 UniRef50_A9B2R1 Helix-turn-helix type 11 domain protein n=2 Tax=... 117 2e-25 UniRef50_UPI00017450F0 Helix-turn-helix, type 11 domain protein ... 117 3e-25 UniRef50_C6CS13 Helix-turn-helix type 11 domain protein n=3 Tax=... 117 3e-25 UniRef50_D1AKN4 Helix-turn-helix type 11 domain protein n=1 Tax=... 117 3e-25 UniRef50_B9MAM8 Helix-turn-helix type 11 domain protein n=4 Tax=... 117 3e-25 UniRef50_UPI0001788164 Helix-turn-helix type 11 domain protein n... 117 3e-25 UniRef50_A4SMQ7 Transriptional regulator, DeoR family n=3 Tax=Ga... 117 4e-25 UniRef50_C2C3S2 Transcriptional regulator n=1 Tax=Listeria grayi... 117 4e-25 UniRef50_A3I1Q3 Putative deoR-family transcriptional regulator n... 117 4e-25 UniRef50_Q163T5 Transcriptional regulator, putative n=15 Tax=Rho... 116 5e-25 UniRef50_A9DPV5 Transcriptional regulator, DeoR family protein n... 116 5e-25 UniRef50_UPI0001B58C22 helix-turn-helix type 11 domain-containin... 116 6e-25 UniRef50_Q2SQG3 Predicted transcriptional regulator n=2 Tax=Gamm... 116 6e-25 UniRef50_D2BDR8 Helix-turn-helix type 11 domain protein n=9 Tax=... 116 7e-25 UniRef50_D1C7G1 Helix-turn-helix type 11 domain protein n=1 Tax=... 116 9e-25 UniRef50_A7HP98 Helix-turn-helix type 11 domain protein n=3 Tax=... 116 9e-25 UniRef50_C3JIV6 DeoR-family transcriptional regulator n=2 Tax=Rh... 115 1e-24 UniRef50_Q81CS6 Transcriptional regulator, DeoR family n=51 Tax=... 115 1e-24 UniRef50_UPI0001788CE6 Helix-turn-helix type 11 domain protein n... 115 1e-24 UniRef50_C6J5X9 Transcriptional regulator n=1 Tax=Paenibacillus ... 115 2e-24 UniRef50_A9AVG2 Helix-turn-helix type 11 domain protein n=1 Tax=... 114 2e-24 UniRef50_Q15PY3 Helix-turn-helix, type 11 n=1 Tax=Pseudoalteromo... 114 2e-24 UniRef50_C1XZ61 Predicted transcriptional regulator, COG2378 n=2... 114 2e-24 UniRef50_D0L3I9 Helix-turn-helix type 11 domain protein n=1 Tax=... 114 2e-24 UniRef50_UPI0001C3233A Helix-turn-helix type 11 domain protein n... 114 2e-24 UniRef50_C9RCX8 Transcriptional regulator-like protein n=1 Tax=A... 114 2e-24 UniRef50_A5FLV0 Helix-turn-helix, type 11 domain protein n=3 Tax... 114 3e-24 UniRef50_UPI000050FDF4 DeoR family transcriptional regulator n=1... 114 4e-24 UniRef50_B9KCA9 Putative uncharacterized protein n=1 Tax=Campylo... 113 4e-24 UniRef50_C7NJB0 Predicted transcriptional regulator n=1 Tax=Kyto... 113 4e-24 UniRef50_B2UBT2 Helix-turn-helix type 11 domain protein n=43 Tax... 113 5e-24 UniRef50_C0ZA21 Putative transcriptional regulator n=1 Tax=Brevi... 113 6e-24 UniRef50_C7PEN6 Helix-turn-helix type 11 domain protein n=1 Tax=... 112 8e-24 UniRef50_Q0RND8 Putative deoR-family transcriptional regulator n... 112 9e-24 UniRef50_A9KIF8 Helix-turn-helix type 11 domain protein n=1 Tax=... 112 1e-23 UniRef50_D1A246 Helix-turn-helix type 11 domain protein n=3 Tax=... 112 1e-23 UniRef50_C9LWR7 HTH domain protein n=1 Tax=Selenomonas sputigena... 112 1e-23 UniRef50_C9MZ16 HTH domain protein n=1 Tax=Leptotrichia hofstadi... 112 1e-23 UniRef50_B1HQ46 Putative uncharacterized protein n=2 Tax=Bacilla... 112 1e-23 UniRef50_A9E8Y8 Helix-turn-helix, type 11 n=1 Tax=Oceanibulbus i... 112 1e-23 UniRef50_Q2LTY7 Predicted transcriptional regulator, DeoR family... 111 1e-23 UniRef50_Q65MX4 Putative uncharacterized protein n=2 Tax=Bacillu... 111 1e-23 UniRef50_Q11UB6 Transcriptional regulator, DeoR family n=7 Tax=B... 111 2e-23 UniRef50_Q1GC92 Helix-turn-helix type 11 n=19 Tax=Alphaproteobac... 111 2e-23 UniRef50_D1B1H8 Putative uncharacterized protein n=1 Tax=Sulfuro... 111 2e-23 UniRef50_B1QLR3 HTH domain protein n=9 Tax=Clostridium RepID=B1Q... 110 3e-23 UniRef50_D1C4L3 Helix-turn-helix type 11 domain protein n=1 Tax=... 110 4e-23 UniRef50_B1I4N6 Regulatory protein, DeoR n=1 Tax=Candidatus Desu... 110 4e-23 UniRef50_UPI0001B4CEC8 DeoR family transcriptional regulator n=1... 109 6e-23 UniRef50_Q0AKB6 Helix-turn-helix, type 11 domain protein n=1 Tax... 109 7e-23 UniRef50_C8X624 Helix-turn-helix type 11 domain protein n=1 Tax=... 109 7e-23 UniRef50_C4DCR3 Predicted transcriptional regulator, COG2378 n=1... 109 7e-23 UniRef50_B8CYA6 Helix-turn-helix type 11 domain protein n=1 Tax=... 109 8e-23 UniRef50_C1YQ17 Predicted transcriptional regulator, COG2378 n=2... 109 8e-23 UniRef50_Q2YYI6 Probable transcriptional regulator n=1 Tax=Staph... 109 1e-22 UniRef50_C6W4A4 Helix-turn-helix type 11 domain protein n=1 Tax=... 109 1e-22 UniRef50_A3YDU1 Transcriptional regulator, (DeoR-family protein)... 108 1e-22 UniRef50_A0R9T5 Transcriptional regulator, DeoR family n=74 Tax=... 108 1e-22 UniRef50_Q1JX03 Helix-turn-helix, type 11 n=1 Tax=Desulfuromonas... 107 2e-22 UniRef50_C1SHC7 Putative uncharacterized protein n=1 Tax=Denitro... 107 2e-22 UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Provide... 107 4e-22 UniRef50_D2PY48 Helix-turn-helix type 11 domain protein n=6 Tax=... 105 8e-22 UniRef50_C2ZF99 Putative uncharacterized protein n=4 Tax=Bacillu... 105 8e-22 UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibr... 105 9e-22 UniRef50_B3QT91 Putative uncharacterized protein n=1 Tax=Chloroh... 105 1e-21 UniRef50_A6WF08 Helix-turn-helix type 11 domain protein n=1 Tax=... 105 1e-21 UniRef50_C8QWX3 Transcriptional regulator-like protein n=1 Tax=D... 105 2e-21 UniRef50_B7HA30 Hypothetical DNA-binding protein n=2 Tax=Bacillu... 105 2e-21 UniRef50_A8W027 Regulatory protein GntR, HTH n=1 Tax=Bacillus se... 104 2e-21 UniRef50_B2SX79 Helix-turn-helix type 11 domain protein n=41 Tax... 104 2e-21 UniRef50_Q3JYW1 Putative uncharacterized protein n=2 Tax=Strepto... 104 2e-21 UniRef50_A9WUI5 Transcriptional regulator n=1 Tax=Renibacterium ... 104 2e-21 UniRef50_C8XGJ6 Helix-turn-helix type 11 domain protein n=1 Tax=... 104 2e-21 UniRef50_UPI000051035F putative DeoR family transcriptional regu... 104 3e-21 UniRef50_A7GU32 Helix-turn-helix type 11 domain protein n=2 Tax=... 104 3e-21 UniRef50_D0MJ72 Helix-turn-helix type 11 domain protein n=1 Tax=... 104 3e-21 UniRef50_D1BRS2 Helix-turn-helix type 11 domain protein n=2 Tax=... 104 3e-21 UniRef50_B2A7V3 Helix-turn-helix type 11 domain protein n=1 Tax=... 104 3e-21 UniRef50_Q82JJ5 Putative DeoR-family transcriptional regulator n... 104 4e-21 Sequences not found previously or not previously below threshold: UniRef50_A4TX58 Transcriptional regulator n=2 Tax=Proteobacteria... 129 1e-28 UniRef50_Q28UL6 Helix-turn-helix type 11 n=46 Tax=Alphaproteobac... 119 7e-26 UniRef50_B5JRI7 HTH domain family n=3 Tax=Verrucomicrobiae bacte... 117 2e-25 UniRef50_B4X1Q6 HTH domain family n=1 Tax=Alcanivorax sp. DG881 ... 117 3e-25 UniRef50_A8MKC4 Helix-turn-helix type 11 domain protein n=1 Tax=... 117 3e-25 UniRef50_A8LGU9 Helix-turn-helix type 11 domain protein n=5 Tax=... 116 7e-25 UniRef50_A1T989 Helix-turn-helix, type 11 domain protein n=6 Tax... 115 2e-24 UniRef50_Q39LZ1 Transcriptional regulator-like protein n=1 Tax=B... 114 2e-24 UniRef50_Q1GFN4 Helix-turn-helix type 11 n=8 Tax=Rhodobacteracea... 113 4e-24 UniRef50_C4RL45 DeoR-family transcriptional regulator n=1 Tax=Mi... 113 6e-24 UniRef50_Q0REC1 Putative DeoR family transcriptional regulator n... 112 7e-24 UniRef50_A6GCU0 Putative transcriptional regulator n=1 Tax=Plesi... 111 1e-23 UniRef50_D2AWK7 DeoR family transcriptional regulator n=36 Tax=A... 109 1e-22 UniRef50_Q222Z2 Helix-turn-helix, type 11 n=3 Tax=Proteobacteria... 108 2e-22 UniRef50_C0YNW3 Transcriptional regulator, DeoR family protein n... 107 2e-22 UniRef50_Q6ZEN3 Sll5097 protein n=5 Tax=Chroococcales RepID=Q6ZE... 106 7e-22 UniRef50_D0LB20 Helix-turn-helix type 11 domain protein n=5 Tax=... 105 9e-22 UniRef50_A2U2S8 Transcriptional regulator n=1 Tax=Polaribacter s... 105 1e-21 UniRef50_Q1IHV4 Transcriptional regulator, DeoR family n=1 Tax=C... 104 2e-21 UniRef50_A0NPP9 Transcriptional regulator, (DeoR-family) protein... 104 4e-21 UniRef50_B6R9W7 Transcriptional regulator n=1 Tax=Pseudovibrio s... 104 4e-21 >UniRef50_P52133 Uncharacterized HTH-type transcriptional regulator yfjR n=15 Tax=Enterobacteriaceae RepID=YFJR_ECOLI Length = 233 Score = 226 bits (577), Expect = 3e-58, Method: Composition-based stats. Identities = 233/233 (100%), Positives = 233/233 (100%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ Sbjct: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP Sbjct: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL Sbjct: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180 Query: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE Sbjct: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233 >UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BF5E Length = 441 Score = 196 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M + E R+DRLA+RL++++SRL GE+L++ +LA EFGVS RT++RD RERL YLD EY Sbjct: 217 MPKQEHRYDRLAIRLAILVSRLFMGESLNISQLAQEFGVSGRTVQRDLRERLRYLDTEYI 276 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119 G+ LR A + D+L FA + +A FP LD +L++ LL + SPC+I P Sbjct: 277 DGHVSLRDARGPFRTNSDILRFAQITSVAHYFPVLDPKLLSVLLDNRQDSPCIIWNDPPR 336 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 +P F ++Q+I R + + +AP RL+ H WYL A + I VFT Sbjct: 337 QAPELFGGFQVIVQSIIRNRLIRFLHRKHLQSSIAPYRLICHDGEWYLAAVSKDRIQVFT 396 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 L I + +F RN + R+++DP F++ALPHF +I + Sbjct: 397 LSAITDVVMTASSFARNRHIDRILQDPRFMRALPHFDYISGII 439 >UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C349A5 Length = 225 Score = 193 bits (490), Expect = 4e-48, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+ + RHDRLA RL+ IIS+L GET+ + L+ E VS RTLRRDF ERL YLDLEY Sbjct: 1 MSTSVSRHDRLASRLAFIISQLFRGETVYLSALSEELNVSTRTLRRDFNERLQYLDLEYH 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM-CDESPCVIAPANPV 119 G RL + + D+L FA + + LFP LDR+L+ LL +SP ++ P Sbjct: 61 QGGYRLAASQRPFRTDKDILRFAAITHITSLFPALDRKLLTVLLDPTIDSPFIVYHTPPE 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 PS F+ L QAI RR + +G+ +AP +L+ + WYL A+ HI VF Sbjct: 121 QRPSLFGGFYILTQAIVKRRLLQFAHQGKNITNVAPYKLIYYHGHWYLAADIAQHIHVFD 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 + + + FR + L + + + FIQALPH+++IQ + Sbjct: 181 VMALQDVVMTARGFRYREDLNQRLCEEAFIQALPHYQYIQSLV 223 >UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SV45_YERFR Length = 229 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M++ +DRLAVRL+LII RL GE LS+ LA+EF VS RTLRRDF +RL+YLDLE Sbjct: 1 MSEVSMHYDRLAVRLALIIGRLFMGEGLSINALASEFNVSPRTLRRDFNQRLIYLDLEQV 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119 G RL + + D++ FA + +A FP LD +L++ LL + SP V+ A P Sbjct: 61 DGIYRLAKSHIGSRTDGDIIHFARVTHMAQFFPALDSKLLSVLLNKNVGSPYVVYHAPPK 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 P+ F+R+ QAI V L +G LAP RL+ WYLV EH + VF Sbjct: 121 NPPALFGGFYRITQAIIDNVFVELSVQGNEYFNLAPYRLVYFDGYWYLVGEHNLTLQVFL 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 L I + F + + + L + FI+ALPHF+F+++ + Sbjct: 181 LIHITDVTLTPRRFTKKEYITALTAEADFIKALPHFQFVRNLV 223 >UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enterobacteriaceae RepID=C2LK81_PROMI Length = 235 Score = 189 bits (481), Expect = 4e-47, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 133/229 (58%), Gaps = 2/229 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M Q R++DR+AVRLS +I+RL+AGE+L + LA EF VS RTL+RD RERL YL +E + Sbjct: 1 MFQTNRKYDRMAVRLSALIARLMAGESLVLSCLAQEFNVSERTLQRDLRERLAYLGVEGR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-RRLVNALLMCDESPCVIAPANPV 119 G RL + DVL F + G+ LFPGLD R L L +PC+I Sbjct: 61 QGCYRLPINTLKAYRDKDVLTFVKQIGMTRLFPGLDSRLLGLLLTQQPHAPCLIWHHAHK 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 S A F++L+ AIT ++ ++L+ RR L P +L+ + WYL+AE+ + V Sbjct: 121 ISALHADHFYQLVYAITSKQSISLLTPERRFNPLQPYQLIYREGQWYLLAEYYQQVHVLL 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228 L++I +QPL F ++ +L + FI ALPHFR I +LT +P+ Sbjct: 181 LEDIQQVQPLNTPFTPKHAVMQLSQQNSFIAALPHFRLISQ-VLTSLPS 228 >UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteriaceae RepID=B1IPS8_ECOLC Length = 237 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 116/223 (52%), Positives = 146/223 (65%), Gaps = 1/223 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+QAERR+DRL+VRLSLIISRL+AGETL++RKLAAEFGVS RTL RDFRERL+YLDLEYQ Sbjct: 1 MSQAERRYDRLSVRLSLIISRLLAGETLNMRKLAAEFGVSERTLHRDFRERLIYLDLEYQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVIAPANPV 119 G CRL T G + + FA +SG LFP +D LVN+LL D SPC+I Sbjct: 61 DGCCRLLTGGRQEIREEAAMQFARQSGTGALFPDMDHHLVNSLLSSKDSSPCLIWHPGAS 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 + S F RL++A++ R+VTL+A+G RC+ LAP RL+ W+LV EH I VF Sbjct: 121 VTSSRPGIFTRLVRAVSENRKVTLLADGCRCDNLAPYRLIFSTGGWFLVGEHLARITVFA 180 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 L +H + ETF + R++ P F+QALPHF L Sbjct: 181 LHTVHSVTFHAETFTPDGHFTRILSHPDFLQALPHFHVFHSLL 223 >UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PWJ3_PROST Length = 231 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M + + RHDRLA+RLSLIISRL+AGETLS+R LA EFGVS RT++RD ERL +LDL Sbjct: 1 MKKQDTRHDRLAMRLSLIISRLLAGETLSLRALANEFGVSERTIQRDLHERLSHLDLVSN 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCV-IAPANP 118 L + + PD+ F + GLA FPGL R+ VN L+ D PC ++P Sbjct: 61 EAGYCLSS-TLTVWRTPDLFSFLQKVGLASYFPGLTRKTVNHLVQSDLHFPCFMLSPFET 119 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 S F++LIQAIT V + + L P RL ++++ WYL+ ++ V Sbjct: 120 EFSSCDGECFYQLIQAITQHFIVQVKQKEGIYLHLEPYRLALYERAWYLIGYASPYVRVI 179 Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 L I + + FRR +CRL P FI ALPHF FIQH + Sbjct: 180 PLHHIQSVHITEIPFRRRKEICRLSSTPEFISALPHFEFIQHVIN 224 >UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia coli RepID=Q4FBD3_ECOLX Length = 226 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 135/226 (59%), Gaps = 3/226 (1%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M+ RHDRLAVRLSLIISRL+ GE+LS++ L+ EFGV+ RTL+RDF +RL++LDLEY+ Sbjct: 1 MSDNRSRHDRLAVRLSLIISRLMTGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119 +G LR S +P++L F +G+A + P + RL+ L E SPC+I P Sbjct: 61 NGRYSLRRQSSP-GAIPEMLSFIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPD 119 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 + + F +LI AI ++L+A R L PCRL+ + +WYL+A +G + VF Sbjct: 120 ITATFPECFSQLILAIRQCIHISLMA-ERWYPSLEPCRLIYYSGSWYLIALQKGKLQVFP 178 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 L +I + E F R + LV + FI ALPHF FI + TF Sbjct: 179 LADIKSVSLTSERFERRGHIHNLVAEERFISALPHFSFIHKLINTF 224 >UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Campylobacter RepID=Q5HVJ9_CAMJR Length = 290 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 2/217 (0%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64 + +D+L++RL I+S+ GE+LS ++LA EF V RT++RD ERL ++ ++ ++G Sbjct: 1 MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRY 60 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 L + D+ FA SG+A L+P LD+ + LL + ++ Sbjct: 61 VLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQK-VD 119 Query: 125 ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIH 184 F L AI + + ++ ++ P +L+ ++ WYL+ + + F LD+I Sbjct: 120 YELFKDLSVAILKHNVLNFFYK-KKERQIKPYKLVNYKGIWYLLGDENDKLKHFNLDKIS 178 Query: 185 LIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS 221 ++ E F N+ L +++ I I Sbjct: 179 KLRTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKL 215 >UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherichia coli 83972 RepID=C2DJQ1_ECOLX Length = 238 Score = 176 bits (447), Expect = 4e-43, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M HDRL+VRLS+IISRL+AGE+L ++ LA EFGVS RTL+RDF++RL++LDLE++ Sbjct: 12 MKTQHDHHDRLSVRLSVIISRLLAGESLELKVLADEFGVSERTLQRDFQQRLIHLDLEHR 71 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL-LMCDESPCVIAPANPV 119 SG RL + +P+ F SG++G+ P +R+L+ + SPC+I Sbjct: 72 SGSYRLIRQT-GREHLPNTFAFIRNSGISGIIPAQNRKLIRLIASNSGVSPCLIGHGALS 130 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 + F +L +AI R VTL+ G+ E +AP RL+ + W+LVA ++ VF Sbjct: 131 SPVTQTACFLKLAEAIRDYRAVTLLVNGKSYEAVAPRRLIFQSKNWFLVATRTRNLQVFR 190 Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 +++++ + L +FRR L L FI ALPHFRFI + TF Sbjct: 191 MEDVNAVTVLDTSFRRKPELDALTASEEFISALPHFRFISDVIQTF 236 >UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZH4_ACIDE Length = 306 Score = 175 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 7/217 (3%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M D +A RL+ I+ RL GE L L EFGV++RT++RD +R +LDL + Sbjct: 1 MPTPSDPRDTIAYRLTEILRRLNEGEALDPHALVEEFGVNLRTIQRDLNQRFAFLDLVKK 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 G + + + DV FA +GL GL P L + +L ++ + Sbjct: 61 DGRYTIDRSRLGTLTLHDVQRFASLAGLQGLHPRLSTGFLRDILDTRLQSALLIRGHNYE 120 Query: 121 SPSGAL-SFWRLIQAITGRRRVTLIAEG------RRCERLAPCRLLIHQQTWYLVAEHEG 173 F +L QA R V+ + + + P +L+ WYL A G Sbjct: 121 DLHNKESEFNQLKQAAQQHRVVSFEYRKPDSTAAKLVDDIRPYKLVNQDGIWYLAATDAG 180 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210 + + I + L +TF + ++ + + + + Sbjct: 181 KPKSYAVSRIERLLVLADTFTPDPAVLQQIANEDSVW 217 >UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Providencia RepID=B2PW39_PROST Length = 229 Score = 173 bits (439), Expect = 4e-42, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M Q RHDRL RL+ I++ L GETLS R LAAEF VS+RT++RDF ERL+YLD+E Q Sbjct: 1 MAQPSPRHDRLVHRLAYILTHLFKGETLSPRVLAAEFNVSLRTIQRDFHERLVYLDIEQQ 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM--CDESPCVIAPANP 118 RL S ++ D+L FA + + LFP LDR+L++ LL SP V+ A P Sbjct: 61 EEGYRLAGGQSALRTDSDILQFAQITDITPLFPVLDRKLLSLLLSRHAQGSPYVVYHAPP 120 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 PS F + QAI + + G+ +AP +L WY+ G I Sbjct: 121 KALPSVYGGFALITQAILDNQFIHYEIGGKTTHWVAPYKLTYFNGHWYVCGVMNGLIHAV 180 Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 L + + F+ + +L + + + FIQALPHF++I+ L Sbjct: 181 ELLHLRDVGLSARHFKPDTALLQRMTERAFIQALPHFQYIKGIL 224 >UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax=Proteobacteria RepID=A1VQX0_POLNA Length = 301 Score = 173 bits (437), Expect = 6e-42, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 5/212 (2%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGY 63 HD L RL+LI+ +L GE L + LA EF V++RT++RD ER YL LE G Sbjct: 5 TAAHHDTLVYRLALILVKLNQGEKLDPQALADEFSVNLRTIQRDLNERFAYLPLEKTDGL 64 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123 L DV FA +G+ GLFP L + + ++ + + Sbjct: 65 YHLHPTFLGKLSTRDVERFASLAGVRGLFPSLSDDFLRDIFDTGIQASLLVKGHNYEHLA 124 Query: 124 GAL-SFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178 G +F +L QAI RR + + + P +L+ H+ WYL A+ G + F Sbjct: 125 GKEANFRQLEQAIVTRRSIAFEYRKDEGIKLYADVEPYKLMNHKGIWYLAAKDGGKLKTF 184 Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210 + I + L F + S+ + + + I Sbjct: 185 SFARIERLVLLNAIFLPDPSVDKTLLEEDGIW 216 >UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter RepID=D0SAP6_ACIJO Length = 301 Score = 168 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 5/230 (2%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M + H+RLA RL+ I+++L G L V +LA EF VS RT+ RDF YL L Sbjct: 1 MKRKASTHERLAERLANILTKLNTGYQLGVAELAHEFQVSTRTIERDFDRLNTYLPLFQD 60 Query: 61 S--GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP 118 L + D+ FA SG++ L+P LD + LL + A Sbjct: 61 EYTKKYFLDPVYLGRFKLQDIQNFAQLSGISELYPSLDMTFLRGLLDERANQVFSAKGYY 120 Query: 119 VPSPSG-ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 + A F AI R++++ I + P RL+ HQ +WYL A + Sbjct: 121 YENAQQFAEHFQVFAGAIHKRQKISFIYND-LLRHVDPYRLIHHQGSWYLAAAVADELRA 179 Query: 178 FTLDEIHLIQPLQ-ETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226 + L +I + + E F + + +E I H + ++ S+ V Sbjct: 180 YRLSKIDQVVVHESELFDHHLEVLTQLELSEGIWFAKHKQTVKISVRPEV 229 >UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MBC8_9ENTR Length = 303 Score = 166 bits (421), Expect = 4e-40, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 1/207 (0%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64 RHD+L RL LI++RL GE+L++R LA EF V +T+RRD +RL YL+L Q Sbjct: 1 MDRHDKLGYRLGLILTRLNNGESLTIRGLADEFNVCEKTIRRDLTKRLAYLNLHRQGKQY 60 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 L + D+ F G+ GLFP + RL+N LL E+ + P + Sbjct: 61 WLPKGILGQRSNTDLRRFTRILGIEGLFPRWEDRLLNVLLGDTENNPFLIKKRPYENCGA 120 Query: 125 ALSFW-RLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183 +S + AI ++ + + P R++ + WYL A HEG + F + + Sbjct: 121 FMSTLNAISGAIQASLKIAFTYKEKMFSATEPYRVVNDRGLWYLAARHEGTLKSFAVSTM 180 Query: 184 HLIQPLQETFRRNDSLCRLVEDPVFIQ 210 +Q F + + + VE I Sbjct: 181 THVQVSNMRFSPDPVVSQQVEHAESIW 207 >UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-turn-helix domain-containing protein n=3 Tax=Pasteurellaceae RepID=B8F3U1_HAEPS Length = 295 Score = 166 bits (419), Expect = 7e-40, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 11/214 (5%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-GY 63 +++ LA RLS I+S+L G+ + + +LA +FGVSVRT++RD ++RL +L+ E + Sbjct: 1 MQKNTVLAQRLSEILSQLNQGKRIDINQLAEDFGVSVRTIQRDIKDRLAFLEWEESGPRH 60 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123 ++ + D+ FA + ++ LFP +DR L + V Sbjct: 61 YKINRYKLGILSQQDISRFALFASISDLFPKVDRDFYQEKL----TDSVKVKGFQYEDIR 116 Query: 124 GALSFWRLI-QAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 + ++LI QAI + + + + + ++AP L+ WYL+ E Sbjct: 117 HLDNEFQLIKQAIEAHKFIDFLYKKSGQIDGKFYKIAPYSLINKNGIWYLIGTDEDKQKT 176 Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 F +I +++ L ETF N L ++ I Sbjct: 177 FCFTQITMLKMLDETFEPNQQLQEEIKSNDSISF 210 >UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibrio splendidus 12B01 RepID=A3UTJ4_VIBSP Length = 296 Score = 159 bits (403), Expect = 6e-38, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 2/213 (0%) Query: 3 QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSG 62 + + HD LA RL +I++RL GE L + +L+ EF VS RTL+RDF ERL YL ++ Sbjct: 2 RRMKEHDTLAKRLGIILTRLNTGEKLYLEELSREFRVSERTLQRDFNERLNYLPIQRDGA 61 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 L Q +V + + G LF G L N +L +P + + Sbjct: 62 CYFLDPQALGRQSNNEVSLLLMKMGFDTLFSGK-HYLSNGVLNNKSTPPFLFKNPQIEDI 120 Query: 123 SGALS-FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLD 181 S S F +LI++I + + G+ + P RL+ + WYL H + + Sbjct: 121 SKNASVFEKLIESIQRKSTIGFTCNGKSYDEFHPYRLVNDRGHWYLAGTHRNRLESLRVA 180 Query: 182 EIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214 +I + ++ + + ++ + + LPH Sbjct: 181 KIRELVRYEDKYSPDLNVEYKLTGRGYKDELPH 213 >UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax=Campylobacter RepID=B9CZE1_WOLRE Length = 288 Score = 159 bits (401), Expect = 8e-38, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 3/204 (1%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64 R HD++ RLS I++RL +G L + +L EF V+ RT+ RDF RL L ++ ++G Sbjct: 1 MRSHDKIGFRLSRILTRLNSGARLGIDELVEEFNVNKRTILRDFE-RLSILPIQKENGKY 59 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 L D+ FA G LFP LD R ++ +L + + S Sbjct: 60 FLEEYALGKLGFKDIKAFAALIGARSLFPELDDRFISDVLNEKLNKAYLIKNQGFESIQI 119 Query: 125 ALS-FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183 + F + A+ R + G + +L P +L+ + WYL+A+ EG + FTL +I Sbjct: 120 SRDDFEAVSAAVIKNRTLECEYNG-KERKLNPYKLINNSGIWYLLADDEGKLKNFTLSKI 178 Query: 184 HLIQPLQETFRRNDSLCRLVEDPV 207 I+ +TF N + +E Sbjct: 179 KRIKIKGDTFAANAEFLKRIEKND 202 >UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Tax=Acinetobacter RepID=B7GVE1_ACIB3 Length = 303 Score = 154 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 10/232 (4%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY---LDL 57 M ++ + H+RLA RL+ II+RL GE L +L +FGV+ +T++RD + L + Sbjct: 1 MVKSLKAHERLAERLANIITRLNRGEYLDSNELTLDFGVTKKTIQRDIERLSIAGLPLVI 60 Query: 58 EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117 + ++ L D+ FA SG+ GL+P LD + LL S A Sbjct: 61 DEKTRKFYLGANYVGKISPQDIQNFAQLSGITGLYPNLDLSFLRELLDSRSSEVYAAKGY 120 Query: 118 PVPSPSG-ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEG--H 174 + + + F + +AI R+++T + + P +L+ H +WYL A Sbjct: 121 FFENTTHFSELFKLIREAIQDRKQITFQY-NSKLRTVQPYKLIHHHGSWYLAAVSNDQLQ 179 Query: 175 IAVFTLDEIH---LIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 + + L I IQ + F + + + +++ I R I S+ Sbjct: 180 LRAYRLSRIGKDCQIQYHLDHFEPDIEIIKQLKNEESIWFGKEKREIVLSVQ 231 >UniRef50_C6SP18 Putative uncharacterized protein n=2 Tax=Streptococcus mutans RepID=C6SP18_STRMN Length = 307 Score = 152 bits (384), Expect = 9e-36, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 88/239 (36%), Gaps = 19/239 (7%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65 RL I+S L ++ ++LA +F VS RT+ RD + + G+ Sbjct: 2 KLERLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGFSL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR----RLVNALLMCDESPCV----IAPAN 117 ++ + +++ S L GL + L+ LL ES + I ++ Sbjct: 62 MKNYQIDKRILSKADTKNLYSALKGLQSIKQQPELIALIAKLLPEGESNPLADYDINFSS 121 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174 L +AI G+ V L GRR ++ P +L+ WYL A Sbjct: 122 WYTDSLIQKKIEILQEAIEGKSCVLLDYISSSGRRKRKIEPYQLVFKDSAWYLHAFCHKR 181 Query: 175 --IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ-ALPHFRFIQHSLLTFVPADS 230 +F L + + L+E F ++ + +L +LT+ P D+ Sbjct: 182 QAFRLFKLRRMASLTLLEEKFTGRPYPALTLKSTAYSDFSLEPVEGYDKVVLTYHPEDA 240 >UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobacteria RepID=Q1QC98_PSYCK Length = 300 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 14/216 (6%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-G 62 R+H+RLA RLS II RL GE L++ +LA + VS+RTL+RDF++RL L+L + Sbjct: 2 KLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGPQ 61 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 + RL + + D+ FA + + L P +DR+ L + + + Sbjct: 62 FYRLHPSNIGYLDIADIQRFASFASVQDLLPKIDRQFFQEKL----NQSIFVKGFAYENI 117 Query: 123 S-GALSFWRLIQAITGRRRVTLIAE--------GRRCERLAPCRLLIHQQTWYLVAEHEG 173 S F + QAIT + + + L P LL WY+V G Sbjct: 118 SERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPYHLLNKNGIWYVVGRLHG 177 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209 F ++ + ETF+ ++ + + D + Sbjct: 178 QTRTFCFTQMTQLHINTETFQCSEDIKKETLDTDSL 213 >UniRef50_A6VRC7 Helix-turn-helix type 11 domain protein n=3 Tax=Proteobacteria RepID=A6VRC7_MARMS Length = 328 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 27/243 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65 A R+ ++ L E ++ +LA S+RT+ RD Y + Q GY Sbjct: 2 RASRILKMLMMLQTHEKVTAAELADACETSIRTVYRDIEALSAIGVPVYSEQGVQGGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALL-------MCDE 108 L+ + + + G+ L +L AL + Sbjct: 62 LQGYRTRLNGLSAKEAETLFLAGLSGPAQKMGIDTLLADAQLKLKAALPENIRPEIDRLQ 121 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTW 165 S ++ N L+ A+ +R V + + G +L P +++ W Sbjct: 122 SRFLLDAPNWFSDDEKVTYLPDLMTAVLEQRCVVMQYQSWKGEINRQLQPLGIVLKGGQW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDPVFIQALPHFRFIQHSLL 223 YL+A+ E + + + I + L E F R +D + + F I L Sbjct: 182 YLLAQVEQDVRTYRVSRIGSLTLLGEVFERPKDFNLTAFWQDSLRRMEVVQFPIIAEVRL 241 Query: 224 TFV 226 T + Sbjct: 242 TSL 244 >UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibrio RepID=D2YQU2_VIBMI Length = 290 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 5/204 (2%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64 + ++LA RLS I+SRL AGE LS+ L EFGV RT+ RDF RL +L +E + GY Sbjct: 1 MNKSEKLAYRLSQILSRLYAGEKLSLIDLEQEFGVHERTVLRDFN-RLAFLPIEREEGYY 59 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 L+ L G+ LFP DR+ + L ++P ++ P+ + Sbjct: 60 YLKQLDHRNPKAHKALHALSNMGIDKLFP--DRKTMTQALNH-KTPSILFRHIPIEDSAR 116 Query: 125 ALSFWRL-IQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183 L AI R +TL RR ++ P +L+ + WYL+A F + EI Sbjct: 117 FRDTLILIADAIHQRNTLTLTFHNRRYHQMEPYQLINERGYWYLIAAQRTQPHSFRVAEI 176 Query: 184 HLIQPLQETFRRNDSLCRLVEDPV 207 I + + + L + Sbjct: 177 AEIIRHDDIYTPSPILSEKLTREE 200 >UniRef50_B2T6R2 Helix-turn-helix type 11 domain protein n=4 Tax=Proteobacteria RepID=B2T6R2_BURPP Length = 321 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 25/242 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65 A RL I+ L A ++ + LA E VS+RT+ RD + + + GY Sbjct: 2 RASRLLSILMTLQARGRVTAQFLADECAVSLRTIYRDIDALSAAGVPVHSERGAEGGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRS----------GLAGLFPGLDRRLVNALL-------MCDE 108 L + + + + GL + G +L+ AL Sbjct: 62 LDGYRTRLNGLSSQEAESLFLAGLPGPMQALGLGAVMAGAQTKLLAALPVELRSTAERMR 121 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQTW 165 S + + +A+ + + + + + R+ P +++ W Sbjct: 122 SRFHLDAPAWFSDADEPAHLPLIARAVWEQHPLEIRYQSWKAEKFRRIEPLGIVLKSGAW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 Y+V + ++ + I I L ETF R + Q L + L Sbjct: 182 YVVGRVGQDLRIYRISRILEISLLDETFERPCAFDLTTYWQDSTQRLSEEMHASEATLRL 241 Query: 226 VP 227 P Sbjct: 242 SP 243 >UniRef50_B2JN46 Helix-turn-helix type 11 domain protein n=4 Tax=Proteobacteria RepID=B2JN46_BURP8 Length = 323 Score = 141 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 76/244 (31%), Gaps = 28/244 (11%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLR 67 RL ++ L ++ + LA EF VS+RT+ RD + Y D G+ L Sbjct: 4 SRLVSMLLMLQVKGRVTAQALADEFDVSIRTVYRDIDQLSAAGVPVYADRGPGGGFALLD 63 Query: 68 TAGSEMQMVPDVLIFAH----------RSGLAGLFPGLDRRLVNALLMCDE------SPC 111 +++ + GLA +LV AL S Sbjct: 64 GYRAKLTGITRAEAETLSIAGLTGAASDLGLAEQLRAAQLKLVTALPDAAPDTSRIGSRV 123 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-------GRRCERLAPCRLLIHQQT 164 I P P+ L A+ ++RV++ P L++ Sbjct: 124 HIDPVGWYQRPTPTPWLTMLAGAVWEQKRVSMQYRTWNGTDDKEGVRVRDPLGLVLKGGE 183 Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLT 224 WYLV + + + I + ETF R D E + + + L Sbjct: 184 WYLVTRVRTQLRTYRVSSIAQLTVHDETFERPDGFDLREEWTAAVASFERSLLRHTARLR 243 Query: 225 FVPA 228 P Sbjct: 244 LSPE 247 >UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 Tax=Vitreoscilla sp. RepID=O85446_9NEIS Length = 190 Score = 140 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 14/193 (7%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-EY 59 M+ + +LA RLS I+ L +G+ LS LA ++GVS++T++RD +RL L E Sbjct: 1 MSANTK---KLAERLSAILVDLHSGQRLSAHGLAEKYGVSLKTIKRDLGQRLDNLPWLET 57 Query: 60 QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119 + L T + + + F + + LFP D+ ++ LL ++ Sbjct: 58 GPQFYCLDTQQMQHTNLETLTRFCWFAAIKELFPPKDQAFLDNLL----KDHILVKGLKY 113 Query: 120 PSPSG-ALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYLVAEHEG 173 + G F +L QAI V + + +AP L+ WY++ +G Sbjct: 114 ENIQGLKQQFLQLEQAIDLYHMVYFDYCKINEKQAKPYTIAPYGLVNKNGIWYVIGLDQG 173 Query: 174 HIAVFTLDEIHLI 186 + +I + Sbjct: 174 REKTYNFVQISNV 186 >UniRef50_Q5WCJ1 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCJ1_BACSK Length = 321 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 80/236 (33%), Gaps = 30/236 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL I+ L + +S + LA E GVS RT+ RD +Y + G+ Sbjct: 2 RAERLLSIVLLLQNRKIISTKALAEELGVSERTVHRDMDALSSAGIPVYAERGKTGGWKL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRS----------GLAGLFPGLDRRLVNALLMCDESPCVIAP 115 L +++ + + G + +L+ +L A Sbjct: 62 LDGYRTQLTGLTKEEVKTLFLSPPIDLLGDLGYTKNWQEAREKLLASLSSATSVDFADAQ 121 Query: 116 ANPVPSPSGALSFWRLIQA-------ITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164 S ++A + +R +++ E + P L+ T Sbjct: 122 NRIYIDASTWRGKKETVEAFSLLNQGLWEQRALSISYEKYGSTASEREVEPLGLVAKGST 181 Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216 WYL+A + + F I Q L + F R ++ R D FI+ LP + Sbjct: 182 WYLIAAEQQELKTFRASRIRSAQLLPKRFERPENFDLARYWHDSKNAFIRTLPSYE 237 >UniRef50_C0EAB2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAB2_9CLOT Length = 298 Score = 139 bits (350), Expect = 7e-32, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 72/215 (33%), Gaps = 18/215 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRT 68 RL +I L+ ++ ++LA F VS RT+ RD Y G L Sbjct: 5 RLFEMIYLLLDRRRMTAKELAERFEVSERTVYRDVEVLSAAGIPVYATKGRGGGIQLLDD 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRL--VNALLMCDESPCVIAPANPV-PS 121 + ++ + L G+ +P +D L +++L + + Sbjct: 65 FVLDKSVLSEREKNEILFSLQGMSAAHYPEIDEVLNRLSSLFQQSNTDWIDVDFTQWGSD 124 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGHI 175 F RL AI R+RV + + + P +L + WYL A Sbjct: 125 EEEKKKFARLRDAILSRKRVRMCYCSAYGIQSSRTVEPVKLRFKGKAWYLQAYCCKRQEY 184 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210 +F L I + E F E P F Q Sbjct: 185 RMFKLFRISNLSVTDELFEPKQPPSWEEEKPSFSQ 219 >UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QCN2_SULNB Length = 307 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 13/217 (5%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65 + +D++ RL++I+SRL E LSV +LA EF VS RT++RDF ERL+ + + Sbjct: 5 KDYDKILTRLTVILSRLYDREALSVTELAEEFNVSGRTIQRDFNERLISFPIYQDKKKWK 64 Query: 66 LRTAGSEMQMVPDVLIFAHR------SGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119 ++ ++ + G F +L++ + D +P I + Sbjct: 65 MQDGFRIEKIKSIEEQLVLDIIEKMTESIGGKFATTSHKLLSKIKNEDFNP--IYTKLNI 122 Query: 120 PSPSGALSFWRLIQ-AITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEHEGH 174 S +LI+ AI + + E R + P +++ ++ WYLVA +G Sbjct: 123 EDISDRFDDIQLIEKAIKDKTELECSYENEREGTFRANIQPLKIVNYEGFWYLVAFKDGT 182 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 + + + + IQP +TF ++ + L+++ + I Sbjct: 183 VQKYYIKTLSNIQPTAKTFTVDEDIEELLKNSINIWF 219 >UniRef50_B1BVT1 Transcriptional regulator, DeoR family n=3 Tax=Bacteria RepID=B1BVT1_CLOPE Length = 299 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 18/205 (8%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67 RL II L+ + +LA +F VSVRT+ RD +Y G Sbjct: 4 SRLFRIIYYLIEKGKSTAPELAKKFEVSVRTIYRDIDVISSVGIPIYATQGKNGGIVIDE 63 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------VNALLMCDESPCVIAPANPVPS 121 + M+ SGL G+F + AL + + Sbjct: 64 DFTLDKSMLSQKEKEQILSGLQGVFATNGNNTNELLTKLGALFHMQTKNWIEVDFSDWVQ 123 Query: 122 PSGALS-FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGH 174 A + F + AI R ++ + P +L+ + WY+ Sbjct: 124 CQPAQNIFNDIKNAILDRHIISFEYFNNLGNSIFRHIQPLKLIFKSKAWYVYGFCMLRND 183 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSL 199 F L I ++ ++ F +++ Sbjct: 184 YRFFKLTRIKHLKITEKQFIPPETI 208 >UniRef50_Q65LG5 Hypothetical DNA-binding protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65LG5_BACLD Length = 320 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 82/249 (32%), Gaps = 31/249 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYC----- 64 RL I+ L A ++ ++LA VS RT+ RD + + + G Sbjct: 2 RGDRLISILLMLQAQGQMTAKELAERLEVSERTIYRDMEALSGAGIPVVAERGINGGWSL 61 Query: 65 ---------RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPC---- 111 L+ + VP GL + +L+ +L Sbjct: 62 LDDYQTTLTGLKESEIRALFVPLSEQLLDDLGLTRISEEARNKLIASLPSEYRQNAKDVW 121 Query: 112 ---VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164 I + A SF L AI +++ ++ + +AP L+ Sbjct: 122 NRIYIDTCSWRHKKEKAESFEVLKDAIWKDQKLKIVYQRADGQTADRVVAPLGLVAKGAN 181 Query: 165 WYLVA-EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFRFIQ 219 WYL+A + G I + I ++ETF R ++ FI+ LP + Sbjct: 182 WYLIASKENGEIRNYRASRIKSAVFVRETFDRPENFDIAHVWRSSTKEFIERLPTYEVRV 241 Query: 220 HSLLTFVPA 228 + +P Sbjct: 242 KAAQAILPR 250 >UniRef50_D1CGQ4 Helix-turn-helix type 11 domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGQ4_THET1 Length = 317 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 73/243 (30%), Gaps = 28/243 (11%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYC----RLRT 68 R+ + L A ++ +LA V VRT RR + +E + G Sbjct: 7 RVLAALELLQAHGRMTGAELARRLEVDVRTARRYIEMLQDLGIPIEGERGRYGAYRLRPG 66 Query: 69 AGSEMQMVPDVLIFAHRS---------------GLAGLFPGLDRRLVNALLMCDES--PC 111 M + A + L R + +L ++ Sbjct: 67 YKLPPMMFTEDEALALTLGLLLSRRSALGAATPAIESALAKLSRVMPASLQEQVQAVEES 126 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167 +I P SP + + A+ ++RV + P L+ WY Sbjct: 127 LILDVAPAESPPDSSVILTMSLAVHKQQRVRMTYRAWNGEETEREFDPYGLVYRDGRWYT 186 Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225 +F LD + I L TF R + L E I +P +++ L T Sbjct: 187 TGYCHLRRAQRLFRLDRVLCIAMLDATFERPEGFDPLQEVVRTIANIPDDWYVEVVLETS 246 Query: 226 VPA 228 + Sbjct: 247 MAR 249 >UniRef50_A9AWW0 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWW0_HERA2 Length = 319 Score = 137 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 72/217 (33%), Gaps = 28/217 (12%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG----YCRLRT 68 RL I+ L + + + +LA+ +S RT+RR + +E + G Y R Sbjct: 7 RLLTILELLQSHQRMRGAELASRLEISQRTVRRYVVMLQDMGIPVEAERGPDGAYYLGRG 66 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLF---------------PGLDRRLVNALLMCDE--SPC 111 M+ A GL + L+R + LL Sbjct: 67 YTIPPLMINPTEALALVLGLRMIHALQFPVDATAIEGAIAKLERVMPTILLDQVRAFQEA 126 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167 + P P+ L A+ R++V L + P ++ +Q WY Sbjct: 127 ITFHVAPPPALLQPSIVASLSVAVHTRQQVWLSYQTYNGDASVRVFDPYGIVYYQGYWYS 186 Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRL 202 V + F +D I ++ L ++F R L Sbjct: 187 VGYCHQRNDLRTFRIDRIQELKLLNQSFERPQDFDAL 223 >UniRef50_A7GBR0 Putative uncharacterized protein n=10 Tax=Bacteria RepID=A7GBR0_CLOBL Length = 310 Score = 137 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 26/225 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCR 65 RL II L+ E +S KLA F V+ RT+ RD L + + G Sbjct: 2 KIDRLISIIMVLLNNERISAIKLAEMFEVTPRTIYRDIDTISLAGIPIITHTGVNGGVSI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC---------------DESP 110 + + + I GL+ + L + V L + Sbjct: 62 MPEYKVDKKFFTASDISTLLMGLSSVSTTLSNKEVIGTLEKVKSLLPKDQFRDIELKSNQ 121 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166 I + + S + ++ A+ + ++ G + P +L++ + WY Sbjct: 122 ITIDLTTWMGNKSFQPNLEKVKSALNDSKYLSFEYYGGNRKKDKRCIEPYKLILKENNWY 181 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209 L VF L I ++ L+ F + + ++ +I Sbjct: 182 LQGYCTLREDFRVFKLSRISNLEILESIFVPREFKSKPLDGSGWI 226 >UniRef50_C6D6M2 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6M2_PAESJ Length = 237 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 71/232 (30%), Gaps = 29/232 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE---YQSGYCRL 66 A RL I+ L + +LA VS RT+ RD L + + G L Sbjct: 2 RADRLISILMLLQLEGKKTAAELAERLEVSERTIYRDMDALSLSGVPVYADSGAGGGFSL 61 Query: 67 RTAGSEM---QMVPDVLIFAH--------RSGLAGLFPGLDRRLVNALLMCDESPC---- 111 P++ + G+ +L+ AL Sbjct: 62 PPNYKSPIDGLTTPEIQALFLYAAEGSTDQLGIVSALRSALLKLMQALPEQSREDAAWIR 121 Query: 112 ---VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQT 164 I P + F + ++I V + R + + P L+ Sbjct: 122 QRIHIDPDSWQREEKALPHFAAVQESIMQHYAVEISYRSRDGAEKSLTVKPYGLVAKAGI 181 Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFR 216 W+L+ E + + + L I ++ +E F R +S + + + + Sbjct: 182 WFLIGEGDQGVQAYRLSRIQGLKITEEKFERPESFDLQ---GFWKEWVTRYE 230 >UniRef50_C1IA92 Transcription regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IA92_9CLOT Length = 301 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 18/203 (8%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 RL II L+ + ++ ++LA F VS RT+ RD + +Y+ G Sbjct: 5 KGNRLFEIIYILLDKKNVTAKELAEHFEVSQRTIYRDIEDLSQSGVPIYMTKGKGGGISL 64 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAPANP 118 L ++ + + GL F G+ +L + L +E+ + +N Sbjct: 65 LSDFILNKAILSQEEKKEILAAMQGLNAVNKSEFNGVLSKLSSFLGGDNENWIEVDFSNW 124 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEHEGH 174 + + F + +I + ++ + P +L+ Q WYL A Sbjct: 125 DKNNTLGEKFTTIKNSIINKNLISFEYFNSNGKLLERIVEPLKLVFKGQGWYLYAYCRER 184 Query: 175 I--AVFTLDEIHLIQPLQETFRR 195 F L + I + E F R Sbjct: 185 EDNRFFKLTRMSNINIILENFNR 207 >UniRef50_B2V022 DeoR-family transcriptional regulator n=5 Tax=Clostridium RepID=B2V022_CLOBA Length = 298 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 18/201 (8%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65 RL I++ LV+ ++++ +LA F VSVRT+ RD + + G Sbjct: 2 KIDRLFSIVNILVSKKSVTATELAERFDVSVRTIYRDIEILSTNGIPICSAQGKGGGLSI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFP------GLDRRLVNALLMCDESPCVIAPANPV 119 L + ++ D L + + +L + + + Sbjct: 62 LDNYSIDKTILSDSEQKQVLMALQSVNATGQINVDDSFLKLRSLFRKNVIDWIEIDFSGW 121 Query: 120 PSP-SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174 +F + +I + V + R + P +L+ WY+ Sbjct: 122 EQSKEDKENFKIIKDSIINSKAVYISYFSNKGERSERIVEPYKLIFKGYNWYIYGYCRKR 181 Query: 175 --IAVFTLDEIHLIQPLQETF 193 + F L I I+ L++TF Sbjct: 182 KDMRFFKLTRIEKIEILKDTF 202 >UniRef50_C0ZCT1 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCT1_BREBN Length = 309 Score = 135 bits (340), Expect = 9e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 26/224 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCR 65 RL I+ L+ +S R+L+ F VS+RT+ RD + + GY Sbjct: 2 KVERLLAIVIMLLNKRRVSARELSDHFEVSLRTVYRDLETINAAGIPIVAYPGVSGGYEI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES--------------PC 111 + + Q + + A + L G+ D + + LL ++ P Sbjct: 62 MENFTIDRQYLSLDELVAVIAALKGVHSSTDDKQIGQLLEKIKALLTTAPSSLQGSAHPV 121 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167 V +P+ A +L +AI R RV +I + P L+I WY+ Sbjct: 122 VYDFNPWGSTPAIAEKVNKLREAIEKRLRVRIIYTKIQGDATERTIEPVTLIIKGYVWYI 181 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS-LCRLVEDPVF 208 +F L I + L E F + + +L + Sbjct: 182 YGYCLQRQEDRLFRLSRIADMSVLTEEFSPRPNQIDKLEWLEEW 225 >UniRef50_A6P211 Putative uncharacterized protein n=5 Tax=Bacteria RepID=A6P211_9BACE Length = 302 Score = 135 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 20/205 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL----EYQSGYCR 65 RL I+S L+ E ++ +LA +F VS RT++RD + + G Sbjct: 2 KMERLIGILSILLQCEKVTAPELAEQFEVSRRTIQRDIESLCRAGIPITTAQGAGGGISI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES---------PCVIAPA 116 + + ++ + A +GL L R L+ + ++ Sbjct: 62 MEGYRVDRTVLTAPEMQAILAGLRSLDSVSGTRRYAQLMEKLSAGTGGLVPGCAHMLIDL 121 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHE- 172 + S + AI + +G + P L+ H TWY+ Sbjct: 122 SSWYKTSLPPKIELIQGAIEQHHTICFTYFSPKGESVRTIEPYYLVFHWSTWYVWGWCRM 181 Query: 173 -GHIAVFTLDEIHLIQPLQETFRRN 196 +F L+ + + E+F Sbjct: 182 REDFRLFKLNRMTELT-TGESFAPR 205 >UniRef50_C0CTB1 Putative uncharacterized protein n=4 Tax=Firmicutes RepID=C0CTB1_9CLOT Length = 312 Score = 135 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 77/228 (33%), Gaps = 26/228 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL II L+ E + ++LA F VS RT+ RD + + G Sbjct: 2 KTDRLVSIIMMLLDKERIGAQELADRFEVSPRTIYRDIETINMAGIPVRSTPGVGGGFEI 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLD-----RRLVNAL--------------LMCDESP 110 E ++ +V A S + L LVNAL + + Sbjct: 62 MQEYKVDKNVFSAADLSAILMGLSSLSGMVRGNELVNALAKVKRFIPADRAKEIELKANQ 121 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166 I + + + + R+ A+ R ++ + + P ++++ WY Sbjct: 122 IYIDLSPWMGNRNIQPYLERVKTALQESRLLSFEYADRFGNKTVRTVEPYQIVLKGSHWY 181 Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 +F L I +Q +ETF D +++ ++ + Sbjct: 182 FQGYCRKREDFRLFRLSRISNLQMTRETFSPRDYQKPVLDFGDILKTM 229 >UniRef50_B0MJK4 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MJK4_9FIRM Length = 301 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 67/203 (33%), Gaps = 17/203 (8%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66 + RL II L+ + ++ +LA F VSVRT+ RD +Y G L Sbjct: 3 SSRLFEIIYILLEKKKVTAPELAERFEVSVRTIYRDIDALSSAGIPVYCTQGKGGGIGLL 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLA------GLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 + + + L + +++L D+ V + Sbjct: 63 EDFVMDKSALTEEEQSQILLSLQCMAVTNHMDAKKLLSRLSSLFQKDDENWVYVDFSRWN 122 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEHE--GH 174 F L +AI R V + P +L WYL A + G Sbjct: 123 PRGEKELFETLKEAILNREVVIFDYYNAKGEYSRREAEPMQLYFRGMDWYLTAFCKKSGE 182 Query: 175 IAVFTLDEIHLIQPLQETFRRND 197 I +F L + + +E F R D Sbjct: 183 IRIFKLKRLKNLVKTEERFLRKD 205 >UniRef50_UPI0001C37EC6 helix-turn-helix type 11 domain-containing protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37EC6 Length = 302 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 19/201 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL I+S L+ + ++ +LA +F VS RT+ RD + + + G + Sbjct: 2 KIDRLIGILSLLLQRDKITSAELAEKFEVSRRTILRDIETLNQSGIPVFAEQGQGGGISV 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLD--------RRLVNALLMCDES-----PCVIAPA 116 +M +L + LD RRL+ L D S +I Sbjct: 62 MEGYKMDRTLLSSEDMRAILSGLQSLDSVSGTNRYRRLMEKLSADDRSSADADNHIIIDL 121 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAE--H 171 + + A + QAI R + + P L+ +WY+ Sbjct: 122 SSWDKSAVADKIELIKQAIEKRHIIAFSYFSPSSETQRNIEPYHLVFQWSSWYVWGFCTD 181 Query: 172 EGHIAVFTLDEIHLIQPLQET 192 G +F L + ++ E Sbjct: 182 RGDYRMFKLTRMTELKMTDEK 202 >UniRef50_Q9RY95 Repressor protein, putative n=1 Tax=Deinococcus radiodurans RepID=Q9RY95_DEIRA Length = 316 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 77/250 (30%), Gaps = 35/250 (14%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG----YCRL 66 ++R+ ++ L A E ++ +LA VS RT++R + +E + G Y Sbjct: 6 SLRVLTVLELLQAREEVTGAELARRLEVSPRTVQRYVARLQDLGIPVEGRRGVGGAYRLK 65 Query: 67 RTAGSEMQMVPDVL--------IFAHRSGLAGLFPGLD---RRLVNALLMCDE------S 109 M GL+ L P + +L L Sbjct: 66 PGFRLPPLMFTGEEALALALGLRALQHLGLSDLLPAAEVAGAKLSRTLPPELRDTVAALE 125 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTW 165 +P + + A L QA +R L + R++ W Sbjct: 126 QVAQLSVSPWVTSTDARLLTTLFQAAREGQRAELTYRSGAAQHTEREVEVYRVVHVDGRW 185 Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 Y V G + F LD I + +ETF L Q LP + S+ Sbjct: 186 YAVGHCRLRGALRCFRLDRIETCRLREETFTPPADFDAL---AFLQQELPAAHPYEISVW 242 Query: 224 TFVPADSPPE 233 +PPE Sbjct: 243 LA----APPE 248 >UniRef50_C9AAC3 Transcriptional regulator n=3 Tax=Enterococcus casseliflavus RepID=C9AAC3_ENTCA Length = 302 Score = 134 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 17/199 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL +I L+ E + +LA +F VS RT+ RD +Y + G L + Sbjct: 5 RLFGLIYHLLNHEKATTSELAKQFEVSTRTITRDINTLSSIGVPIYTETGRNGGVYLLSS 64 Query: 69 AGSEMQMVPDVLIFAHRS---GLAGLFPGLDRRLVNALLMCDESPCVIA----PANPVPS 121 + ++ + G+ L P + + + L + P + Sbjct: 65 FVLDKVLLSEEERKNLLLALKGIRQLTPQISGQSLAKLQSLFKQPDADWLEVDFSTWHRR 124 Query: 122 PSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGH--IA 176 +G +F L ++I +T +G + P +LL Q WYL A + Sbjct: 125 ENGNDTFDLLKKSILTNHVITFDYISKQGLQKRICQPYKLLFRSQAWYLQAFDQQKNAFR 184 Query: 177 VFTLDEIHLIQPLQETFRR 195 F + + + + F Sbjct: 185 TFKISRMSQVHVTDQHFFP 203 >UniRef50_Q0AX84 YobV n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX84_SYNWW Length = 311 Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 76/229 (33%), Gaps = 32/229 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 RL II L+ E + ++LA FGVSVRT+ RD L + + G + Sbjct: 2 KIDRLISIIIVLLRRERVQAKELAEMFGVSVRTILRDVDTINLGGIPIITYQGVNGGISI 61 Query: 70 GSEMQMVPDVLIFAHRS-------GLAGLFPGLDRRLVN------------ALLMCDESP 110 ++ VL + G+A P ++ LL Sbjct: 62 AEGYRLDKSVLSAGDMATLISTLKGVAASIPDSRFDILAEKLKNPLSTSQLELLDLKSRQ 121 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166 +I + + L QAI R + R ++ P LL+ Q+WY Sbjct: 122 MIIDLSPWGTNEQLKGKITLLRQAIENYREIEFAYIDAAGTRSIRQVEPYALLLKGQSWY 181 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRND------SLCRLVEDPV 207 L A +F L I +Q + T++ + ++ Sbjct: 182 LFAWCLLRQDFRLFKLIRIKNLQLVNITYQPREVPMEQDYFENQWQETA 230 >UniRef50_A8S168 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S168_9CLOT Length = 302 Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 71/209 (33%), Gaps = 21/209 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRT 68 R I+ L+ E ++ +LA EFGVSVRT+ RD Y+ + G L Sbjct: 5 RHFRILYILLNNERVTAPELAEEFGVSVRTIYRDIDTMSAAGIPIYMQGGRKGGIYLLEG 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVN--ALLMCDESPCVIAPANPVPSP 122 + + L GL +P +D L+ AL M + + + Sbjct: 65 YRLDKVTLSKTEQAEILLALQGLGAVQYPDIDPVLLKLGALFMSQDRDWIDVDLTRWGTA 124 Query: 123 S----GALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEH--E 172 F L +AITG RR+ + P +L+ + WYL Sbjct: 125 ETVHRDKELFSILRKAITGLRRIHFEYYSAKGEMTVRTVEPAKLIYRCRAWYLAGYCLMR 184 Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCR 201 VF L + +E F + Sbjct: 185 QEPRVFRLSRMKKTGLTEELFEYSPEKEA 213 >UniRef50_Q92EJ5 Lin0464 protein n=2 Tax=Firmicutes RepID=Q92EJ5_LISIN Length = 310 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 26/223 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 RL I+ L+ E +S ++LA F VS+RT+ RD L + + G Sbjct: 2 KVDRLMSIVLILLDKERISAQELADRFEVSLRTIYRDIDAIDLAGVPIRSTPGVGGGFEI 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLD-----RRLVNAL--------------LMCDESP 110 + +M V A S + L L+NAL + + Sbjct: 62 MPDYKMDSKVFSTADLSAILMGLSSLSNMVRGDELINALAKIKSFIPADRAKEIELKANQ 121 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166 I + + + + A+ + +T + + P +L++ WY Sbjct: 122 IYIDLSQWTGNNNIQPHVEIIKVALQENKLLTFEYIAHQGNKTVRIVEPYQLVMKSSHWY 181 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207 L +F L + +Q L++TF D +E Sbjct: 182 LYGYCQNRNDFRLFRLSRMSGLQILEDTFTLRDFQKPQLEMED 224 >UniRef50_UPI0001C425E1 hypothetical protein BpOF4_16355 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425E1 Length = 325 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 32/238 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCR---- 65 A RL I+ L E ++ ++LA + V+ RT+ RD + + + G Sbjct: 2 RADRLLSILFSLQQNEKMTTKELATQLEVTERTIHRDMDALSAAGIPVFAERGKYGGWKV 61 Query: 66 ----------LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES------ 109 L+ + + G+ + ++L+ + Sbjct: 62 LEEYKKAFSGLKESELNTLFLSPSSHLLTDLGIEQEWSEARKKLLATYPAKKKQELTRSW 121 Query: 110 PCVIAPANPVPS---PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQ 162 + ++ + L QA+ V + E R ++P L+ Sbjct: 122 DRIHIDSSTWRKRNAMTKEDGLKELQQAVWNDVNVEIDYEKADGKRSTRVISPLGLVAKG 181 Query: 163 QTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216 TWY+VA G + F + IH + L E+F R + FI+ LP ++ Sbjct: 182 STWYVVAVSNGQLRNFKVSRIHSVTLLSESFDRPVDFNLAEYWHESKQKFIENLPKYK 239 >UniRef50_Q5WD79 Transcriptional regulator n=5 Tax=Bacillus RepID=Q5WD79_BACSK Length = 304 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 18/224 (8%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL II +L+ E LS +LA EF VS RT+ RD + + G Sbjct: 2 KLERLISIIFKLLNNEILSASRLADEFQVSSRTIYRDIEAICAAGIPVVSYQGTNGGFGI 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP---------VP 120 + ++ S L + L + + + Sbjct: 62 IKGYKFDKSLIGSYDLSNLITVLRSLSGIFEDKTIDHTIERLKSLDPSGNNGILSVDLES 121 Query: 121 SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGH 174 + A S L AI +R + + P + + WYL G+ Sbjct: 122 HRTEAHSLIGLRNAIQEKRIIRFDYVSSKNEWTSREIEPIHIQYKFRNWYLYGYCKERGN 181 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218 F + + I ++TF +N + R + + L F + Sbjct: 182 YREFRVSRMMNITLTEKTFAKNHDVKR--DTSFSAKNLERFEDV 223 >UniRef50_Q9S3S5 Putative uncharacterized protein n=1 Tax=Enterococcus faecium RepID=Q9S3S5_ENTFC Length = 302 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 75/222 (33%), Gaps = 20/222 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCR 65 + R+ I+ L+ E ++ ++LA F VSVRT+ RD + + Q G Sbjct: 2 KSNRMFGILCVLLEREKITAQELAEYFEVSVRTIHRDLLDLSSAGFPVTTQQGIGGGISL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC----------DESPCVIAP 115 L ++ I SG+ G + + LL E+ +I Sbjct: 62 LPNFKYSKSVLNKEDIDLIVSGIQGFASIDESSKIKTLLAKLRLGQEDKLLLENDIIIDF 121 Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWYLVAEH- 171 + + + AI RR + L + P +L+ ++ WYL A Sbjct: 122 TSWNHKNTTIEKIKIIRSAIASRRLLELEYYSSNGYSKRTVEPYKLIFKEEYWYLFAYCT 181 Query: 172 -EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 VF L+ I + + T+ V F + Sbjct: 182 QRQDFRVFKLNRISKLLLCERTYTERTDYEIPVLQSAFSNGV 223 >UniRef50_C6PMV9 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PMV9_9CLOT Length = 256 Score = 132 bits (333), Expect = 7e-30, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 76/206 (36%), Gaps = 20/206 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL I+S L E +++++LA F VS RT+ RD + + SG + Sbjct: 2 KIDRLLGILSVLANTERITIQELAERFEVSKRTIFRDLDTLNQSGVPIVAYSGIGGGVSL 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDR--------RLVNALLMCD------ESPCVIAP 115 ++ ++L + GL L+ L+ + ES VI Sbjct: 62 LEGYKLKNNILSKGDIKNIFTALNGLMSIDESNDLINLMAKLIPEETSMVFSESDYVIDL 121 Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHE 172 ++ L +AI R+ + L RR + P +L+ Q WYL A E Sbjct: 122 SSWFQDSITQEKVSNLHKAIKNRKCIYLEYISKRSRRVRIIHPHKLVFKQAYWYLYAFCE 181 Query: 173 G--HIAVFTLDEIHLIQPLQETFRRN 196 +F ++ I + + +F Sbjct: 182 DNQEFRLFKVNRIANYKIMDTSFSYK 207 >UniRef50_B1CBH7 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBH7_9FIRM Length = 299 Score = 132 bits (333), Expect = 7e-30, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 19/218 (8%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCR 65 RL II+ L+ E ++ LA +F VSVRT+ RD + + + G Sbjct: 2 KIDRLMGIITTLLNKEKVTAPFLAGKFEVSVRTINRDILDLCKAGIPIVTTRGAGGGIYL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM---CDESPCVIAPANPVPSP 122 + ++ + I A +GL G+ D LL + + + Sbjct: 62 DPDFKMDKSLLKEDEINAIYAGLKGITSISDNNKYELLLDKFKDNPKNDLDIDLSSYYKK 121 Query: 123 SGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEH--EGHIAV 177 S + ++ +AI + + +G+ + P L +WYL A + Sbjct: 122 SLSDKIEKMQKAINNKLLLEFDYFSKKGKSHRVVEPYTLTFKWSSWYLYAYSLEREDFRL 181 Query: 178 FTLDEIHLIQPLQETFRRND------SLCRLVEDPVFI 209 F L+ ++ ETF + + ++ + + + Sbjct: 182 FKLNRSINLKETGETFLSREIPLQENDIDKIYPNDLNV 219 >UniRef50_A9KRE5 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRE5_CLOPH Length = 299 Score = 132 bits (332), Expect = 9e-30, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 20/215 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGY--------- 63 RL I L+ ++++ ++LA F VSVRT+ RD L + + G Sbjct: 5 RLFEITYLLLNKKSMTAKELAEHFEVSVRTIYRDIDALSLAGIPVYTTKGKGGGISLMES 64 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV-PSP 122 L A + ++L R ++++ E+ + + + Sbjct: 65 YVLNKAVLSEKEQENILASLQGLHAVNRSEDATLRKLSSIFGKKEASWIEVDFSRWGSNS 124 Query: 123 SGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGH--IA 176 F + QAI ++ + +I + P +L+ Q+WYL A + Sbjct: 125 EEKEKFELIKQAILEKQELEMIYHNSSGHESKRIVFPLKLIFKAQSWYLYAYCKEKKDYR 184 Query: 177 VFTLDEIHLIQPLQETFR---RNDSLCRLVEDPVF 208 +F L + ++ + F L ++ Sbjct: 185 IFKLRRVKNLKMNSKKFSIEVPPIDLDEIIYQNEV 219 >UniRef50_C4DT59 Predicted transcriptional regulator, COG2378 n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DT59_9ACTO Length = 339 Score = 132 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 27/233 (11%) Query: 23 VAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEY----QSGYCRLRTAGSEMQMVP 77 L+ +LAAE VS RT+ RD L+ + + + GY L + + + Sbjct: 14 QNRGRLTAAQLAAELEVSERTVYRDIGALLVSGVPIRAITGPEGGYQLLDGYRTRLTGLT 73 Query: 78 DVLIFAHR----------SGLAGLFPGLDRRLVNALLMCDESPC-------VIAPANPVP 120 + GL G G +L+ AL N Sbjct: 74 AAEAESLFVAGIPYAAAGLGLVGTLSGAQLKLLAALPQQARDRATGFSERFYFDAPNWYA 133 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVAEHEGHI 175 P + A + R+ + + P +++ WY+VA EG + Sbjct: 134 EPDQTRFLGAVTDATWSQHRLRIRYRRWEAPQEVERVIEPFGVVLKAGRWYVVARVEGSL 193 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228 F + I + + E F R ++ L Q +++ PA Sbjct: 194 RTFRISRILELDTMDEEFTRPADFDLTAHWTRYLAELSVRLRAQEAVVRLSPA 246 >UniRef50_C6CXH2 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillales RepID=C6CXH2_PAESJ Length = 319 Score = 132 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 31/237 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL---EYQSGYCRL 66 A RL I+ L E L+ R+LA VS RT+ RD L + + ++G RL Sbjct: 2 RADRLLSIMILLQNNEILTTRELAKRLEVSDRTILRDMDALSLSGIPVVADRGKTGGWRL 61 Query: 67 RT---AGSEMQMVPDVLIFAHRSGLAGLFP--------GLDRRLVNALLMCDESPCV--- 112 + + D L + ++L+ +L +S + Sbjct: 62 MDHFRSYLSGLKLEDTKALFILPAEQMLKDLGVEIKGLDIRQKLLASLPDSSKSEALHYM 121 Query: 113 ----IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164 + P+ + + +A+ R+ + ++P L+ + Sbjct: 122 EKVYMDTGTWKPAEEKNNALLTIQKALWEDTRLNMAYRKADGTSSERTVSPLGLVAKGSS 181 Query: 165 WYLVAE-HEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216 WYLVA +G++ F + I + +E F R + F +LP F Sbjct: 182 WYLVAMNDDGNLRSFRVSRITKAEATEELFSRPAEFDLAEYWKQSKLDFAGSLPTFE 238 >UniRef50_A6F2P0 Transcriptional regulator, DeoR family protein n=2 Tax=Alteromonadales RepID=A6F2P0_9ALTE Length = 318 Score = 132 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 62/231 (26%), Gaps = 30/231 (12%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRT---- 68 R+ ++ L + +LA GV RT+RR + + + + G Sbjct: 7 RVLTVLELLQTHGQIGGAELAERLGVDRRTIRRYITVLEELGIPVMTEQGRYGGYRLVAG 66 Query: 69 AGSEMQMVPDVLIFAHRSG---------------LAGLFPGLDRRLVNALLMCDE--SPC 111 M D A G +A + L+R + L S Sbjct: 67 FKLPPMMFTDEETLAVSLGLLAARQLGLADAAPAIASVQAKLERVMPADLKKRVRGVSDT 126 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167 + L A R V G + P L+ Q WYL Sbjct: 127 TRVILPRGEPSLDDRALQNLTVATEAMRSVGFTYHSPEHGGIDRSVDPYGLVFRQGRWYL 186 Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCR--LVEDPVFIQALPH 214 + F LD I + L TF+R + + H Sbjct: 187 TGFCHLRQAMRSFRLDRISHVHLLTATFQRPPDFDAADFLSESFLSWGRTH 237 >UniRef50_A7VYA2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYA2_9CLOT Length = 304 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 68/212 (32%), Gaps = 18/212 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL I+ L+ GET++ LA VS RT+ RD +Y+ G L Sbjct: 5 RLFEILYLLMEGETVTASALARRLEVSPRTIYRDVEALSGAGIPIYMTKGRGGGIRLLPD 64 Query: 69 AGSEMQMVPDVLIFAHRSGLA------GLFPGLDRRLVNALLMCDESPCVIAPANPVPS- 121 E + L GL + AL + + + Sbjct: 65 FVLEKSLFSHQEQDEILYALQSLAVTGGLQDKTVLSRMRALFQRTPADWIDVDFSGWGHG 124 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGHI 175 P F R+ QA+ R ++ R+ P +L WY+ + + Sbjct: 125 PQEREKFLRIKQAVLESRVLSFTYYSTCGQTTNRRIEPMKLRFRGSAWYVHGFCLEKQEL 184 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207 VF + + I +E F R +E+ Sbjct: 185 RVFKVSRMEGISVTEEAFDRRALELPPLEEES 216 >UniRef50_B8FW42 Helix-turn-helix type 11 domain protein n=3 Tax=Clostridiales RepID=B8FW42_DESHD Length = 298 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 18/199 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-----LMYLDLEYQSGYCRLRT 68 RL II L+ T++ +LA F VS RT+ RD +Y+ G L Sbjct: 5 RLFEIIYILLENRTITAAELAERFEVSARTIYRDVEILAQGGMPIYMSKGKGGGISLLPD 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRL--VNALLMCDESPCVIAPANPVPS- 121 ++ + S L + L + ++L + + + Sbjct: 65 FILNKAVLTEEEKSEILSSLQAFNAVNLSKSETALSKLTSMLGAKNTDWIEVDFSSWGHF 124 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEH--EGHI 175 + F + AI ++ +T + + + P +L+ WYL Sbjct: 125 ENDRAYFENIKTAIIEKKIITFMYASGKAEKLLREVLPLKLVFKGAAWYLYGYCTLRRDY 184 Query: 176 AVFTLDEIHLIQPLQETFR 194 F L I + F Sbjct: 185 RFFKLRRITELAVTDTGFE 203 >UniRef50_C7NAI6 Helix-turn-helix type 11 domain protein n=3 Tax=Leptotrichia RepID=C7NAI6_LEPBD Length = 299 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 16/200 (8%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL----EYQSGYCRLR 67 RL I+ L+ +T++ +KL+ F VS+RT+ RD + + G L Sbjct: 4 DRLFQIVLILLNKKTITAKKLSEHFNVSIRTIYRDIEALSFAGIPIYSLRGKNGGIRLLE 63 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVN-ALLMCDESPCVIAPANPVPSP 122 + + ++ L L +P +D L L+ S I Sbjct: 64 SYILDKSLLSSKEQNEILYALESLKASNYPDVDEVLKKLNLIFNKSSDDWIEVDFSRYGS 123 Query: 123 SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGHIA 176 + F + +AI + V + P ++ ++ WYL A + I Sbjct: 124 NDNTLFNNIKKAILNSQAVKFTYFNTNGETSQRTVNPLKIWFKEKAWYLFAYCQKKNEIR 183 Query: 177 VFTLDEIHLIQPLQETFRRN 196 F ++ I + E F R Sbjct: 184 QFKINRIKNLTLTNEYFERR 203 >UniRef50_Q8F269 Transcription regulator n=2 Tax=Leptospira interrogans RepID=Q8F269_LEPIN Length = 317 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 30/240 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL-----------DLEY 59 A RL I+ +L A +S R LA + VS RT+ RD E Sbjct: 2 RADRLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVFAERGSKGGWEL 61 Query: 60 QSGYCRLRTAGSEMQMVPDVL----IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 GY T + ++ +L A G + + +L + + Sbjct: 62 SEGYRTNLTGMKKEEIFSMILTSSTRIASDLGRKKDLDSALMKFMASLPPAYQKEAEMVR 121 Query: 116 ANPVPSPSGALSFWR-------LIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTW 165 +G + +A+ +++ L + + ++P L+ + W Sbjct: 122 QRIYVDGAGWSCSEEELPFLSLIQEAVWQGKKIVLRYKTDEESKKRNVSPLGLVAKGKIW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFRFIQHS 221 YLVA++E F + I + L ++F R + +D F+ +P + Sbjct: 182 YLVAKYEKEFRTFRVSRIVEAK-LGDSFERPKRFDLEKYWKDSTQNFLSKIPSYPVRFKI 240 >UniRef50_B1HUW4 YobV n=2 Tax=Bacillaceae RepID=B1HUW4_LYSSC Length = 308 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 68/223 (30%), Gaps = 23/223 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 RL +I L+ + ++ ++LA F VSVRT+ RD + + Q G + Sbjct: 2 KLERLLTMIMILINRKKVTAQELAELFNVSVRTIYRDIETLSCAGIPVISQQGVHGGISL 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCVIAPA-- 116 ++ VL + L + ++ + + Sbjct: 62 IDGYRVDKQVLTKEELASLTIAIKSALTTYEDSHALAVLEKLTSIADDHVTQTIDHLFVD 121 Query: 117 --NPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE 170 P+ L AI R V+ + P ++ +TWYL Sbjct: 122 LSPWGPNILFKEHITSLKSAIENRHCVSFTYTTAHGELTKRVVEPHTIVQKGKTWYLYGY 181 Query: 171 HEGH--IAVFTLDEIHLIQPLQETFRRND-SLCRLVEDPVFIQ 210 +F L I + F R + +L L + Q Sbjct: 182 CTLRMDFRLFKLARIKNLMQEDLHFERKEINLSELPWGKEWYQ 224 >UniRef50_B9YCC8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCC8_9FIRM Length = 305 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 18/209 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTAGSE 72 R I+ L+ + ++ ++LA F VSVRT+ RD + + + G Sbjct: 5 RCFEIVYLLLERKKITAQELADRFEVSVRTIYRDLDFLSQAGIPIYARRGKDGGIELWDT 64 Query: 73 MQMVPDVLIFAHRSGLAGLFPGLDR----------RLVNALLMCDESPCVIAPANPVPSP 122 + V A + L L GL + V+ALL + A + Sbjct: 65 FVLNKTVFSEAEKQELTALLEGLRSTGVQEETQVLQKVSALLGQPRQSWIEADFSLWSKT 124 Query: 123 SG-ALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGHI 175 + F L AI RR + G + P RL+ Q WY Sbjct: 125 ADQPDLFSLLRHAICNRRCIQFDYYGLNREATHRIVEPLRLVFKAQAWYCYGWCTLREEE 184 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVE 204 F + + + L E+F ++ Sbjct: 185 RFFKIVRMREVVELDESFEPRPLPDTILT 213 >UniRef50_D1PN27 Transcriptional regulator, DeoR family n=3 Tax=Clostridiales RepID=D1PN27_9FIRM Length = 303 Score = 131 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 75/237 (31%), Gaps = 26/237 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 RL I+S L+ E ++ +LA +F VS RT++RD + + G + Sbjct: 2 KMDRLIGILSILLQREQVTAPELAEQFEVSRRTIQRDIEALGRAGIPITTAQGAGGGISI 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDR--------RLVNALLMCDES-----PCVIAPA 116 ++ VL + LD +L+ L + + ++ Sbjct: 62 IEGYRVDRTVLTAPEMQAILAGLRSLDSVSGTRRYAQLMEKLSAGNSTLISGGTHMLIDL 121 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEH-- 171 + S A + A+ V +G + L+ H TWYL Sbjct: 122 SSWYKSSLAPKIEAIQNAMEQHHLVHFTYDAPKGTSVRSVESYYLVFHWSTWYLWGWCQT 181 Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228 +F L+ + + + F + ++ + + F PA Sbjct: 182 RQDFRLFKLNRMTNLS-TGDPFTPRPAPLPDLDPERI------YPTQYQVCVRFTPA 231 >UniRef50_B0N590 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N590_9FIRM Length = 304 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL I L+ + + ++LA F VS RT+ RD + +Y + + G Sbjct: 5 RLFETIYYLIEHKQTTAKELAEHFEVSTRTIYRDLDRLIVAGFPIYANQGAKGGIYIDSE 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDR------RLVNALLMCDESPCVIAPANPV-PS 121 + D L + DR + AL ++ + + Sbjct: 65 FVLDKMTFSDDEQNQILMALQCIERLQDRDEAGLIDKMAALFNKNKLDWIEVDFTTWHHN 124 Query: 122 PSGALSFWRLIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWYLVAEHEGH--I 175 S F + +AI ++ + + + P +L TWYL Sbjct: 125 NSQNEKFETIKKAIFEQKEIKFKYINSYGEKSQRCVFPNKLFFKANTWYLQGYCLQKNSY 184 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH-FRFIQHSLLTF 225 VF L I + F+ + P I +P+ +L F Sbjct: 185 RVFRLTRIIELLTTSNYFQ-----LEEIALPPKINKIPNLNTPRIKVILKF 230 >UniRef50_C9XKH2 DeoR-family transcriptional regulator n=4 Tax=Clostridium difficile RepID=C9XKH2_CLODC Length = 303 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 19/202 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTAGSE 72 RL+ II L+ + ++ ++LA F VS RT+ RD + + + G + E Sbjct: 5 RLTEIIVILLNKKLVTAKELADRFEVSTRTIYRDIETLSMSGVPVYMTKGKGGGISLIEE 64 Query: 73 MQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL------------LMCDESPCVIAPANPVP 120 + +L + L L + + I Sbjct: 65 YSIDKAILSKKDKESLIVALKTLQATKYPEINSVVNKIGSIFGEQNFSNWIEIDFTEWGS 124 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGH 174 + + F ++ +AI R + + + P +L+ +TWYL + Sbjct: 125 NFNEDDKFTKIKEAILRRNTINFNYVNSLSSQTNRTVEPLKLMYKSKTWYLYGFCKLKDD 184 Query: 175 IAVFTLDEIHLIQPLQETFRRN 196 +F + I + E F R Sbjct: 185 FRIFRISRIRNLSIKDEVFSRK 206 >UniRef50_B0MGX9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MGX9_9FIRM Length = 308 Score = 130 bits (326), Expect = 5e-29, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 74/236 (31%), Gaps = 25/236 (10%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67 RL I+ L+ + +LA++F VSVRT+ RD +Y G Sbjct: 7 SRLFKILYYLLEKGQATAPELASKFEVSVRTIYRDIDVMSSAGIPVYAAAGRDGGIKLYD 66 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------VNALLMCDESPCVIAPANPVPS 121 ++ + I GL L + AL + + + + Sbjct: 67 DFIISKALLSESDIQDIFIGLQSLSAAQYSDHEGTLEKLGALFKKTNTDWIEIDFSRWGA 126 Query: 122 PSGALS--FWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEH--EG 173 F L ++ R+ + R P +LL ++WYL Sbjct: 127 CVQKEHEIFSLLKISVLKRQEIVFCYYNSRGEVSERRCRPIKLLYKDRSWYLFGFCCKRN 186 Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPAD 229 +F + + ++ + F + D + I LP + + + P D Sbjct: 187 DYRLFRVSRMRSLKLTEVMF------DEIPHDNLNILPLPEDMEVLNEIELRFPLD 236 >UniRef50_A4FF91 DeoR-family transcriptional regulator n=17 Tax=Bacteria RepID=A4FF91_SACEN Length = 337 Score = 129 bits (325), Expect = 5e-29, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 69/230 (30%), Gaps = 29/230 (12%) Query: 27 TLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRTAGSEMQMVPDVLI 81 S +LA GVS RT+RRD + + + + GY A ++ D Sbjct: 20 EWSGAELAERLGVSARTVRRDVDKLRGLDYPISVGMGRAGGYRLGAGARLPPLLLDDDEA 79 Query: 82 FAHRSGLA---------------GLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126 A GL L++ L + L E+ V P A Sbjct: 80 VAVAVGLRTATGSGVAGVGETALRALVKLEQVLPDRLWRRIEALQVSTVEAPGAPSVDAG 139 Query: 127 SFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGHIAVFTL 180 + A R+R+ P +L+ + WYLVA F + Sbjct: 140 ELTAVATACRDRQRLRFDYRSHDGQETPRVTEPHQLVTWGRRWYLVAWDLERQDWRTFRV 199 Query: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADS 230 D + P F D + Q ++ VPADS Sbjct: 200 DRMRTRVPTGPRFAPRDMPDAA---AFVASGVARAWPYQATVRLAVPADS 246 >UniRef50_UPI0001789548 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789548 Length = 317 Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 84/235 (35%), Gaps = 29/235 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL---EYQSGYCRL 66 A RL I+ L G + R LA + VS RT+ RD + + G L Sbjct: 2 RADRLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSQGGWVL 61 Query: 67 RTAGSEMQ--MVPDVLIFAHR---------SGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 + M PD LI G+ F ++L+ + I Sbjct: 62 EESYRTNLTGMTPDELISLLVSSHSPLIGDLGIRKQFDAAYQKLLASSPRSIRQDAEIIR 121 Query: 116 ANPVPSPSGALSF-------WRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTW 165 +G S+ L +A+ R + + E R R+ P L+ + TW Sbjct: 122 EKIHIDGAGWHSYRESHPYLTVLQEALWLDRIMDIQYMKGEERVERRIHPLGLVAKRSTW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216 Y+VAE +G + + + I ++TF+R E+ F+Q LP + Sbjct: 182 YVVAESQGELRTYRVSRIVDAVMSEDTFQRPAGFNLAEYWEESLARFMQNLPQYP 236 >UniRef50_Q73PY5 Transcriptional regulator, putative n=1 Tax=Treponema denticola RepID=Q73PY5_TREDE Length = 301 Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 16/211 (7%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 + RL I+ L++ + + ++LA +FGVSVRT+ RD +Y G Sbjct: 2 RSERLFEIVFILLSRKQTTAQELAKKFGVSVRTIYRDMDILSSAGIPVYTMQGTGGGIFI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL-----LMCDESPCVIAPANPVP 120 + ++ L L P + + L + + + + Sbjct: 62 DESYTINKSILTKGEQEKILLALQCLSPIDEIHTESILNRLSAIFQKNADWIRIDYSRWD 121 Query: 121 SPSGALSFWRLIQAITGRRRVTLI----AEGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174 + + F L AI RR V L + + P RLL + WY Sbjct: 122 NKNDHHLFKTLKDAILERRAVKLEYLSSYGEKTERTVYPLRLLYKSKAWYAECYCTEKNA 181 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 +F L I I +TF R D L ++ +D Sbjct: 182 CRLFRLTRILSIIKTLKTFNRADLLGKIPDD 212 >UniRef50_C4FVK8 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271 RepID=C4FVK8_9FIRM Length = 296 Score = 129 bits (324), Expect = 7e-29, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 15/201 (7%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSGYC-R 65 A RL I+ L+A R LA F V+ RT+ RD + + ++ Q G Sbjct: 2 KAGRLLGILHYLLAHGRTPARVLAQRFEVTERTILRDMDDLSEFGVPVYAIQGQGGGWEI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFP--GLDRRLVNALLMCDESPCVI--APANPVPS 121 R ++ + + L GL +L ++ + S Sbjct: 62 DRRYVLPAGLLQEQEQSQILAALEASQADDGLLDKLKAHFKGSQKADHWLLVDQTTWHQS 121 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGH--I 175 P + F L QAI R VT ++ P RL++ WYL A Sbjct: 122 PHLSHDFDLLKQAILERHLVTFRYCSNQGIWSQRQVEPARLVLKHYRWYLYAWCRERQDF 181 Query: 176 AVFTLDEIHLIQPLQETFRRN 196 F L + +Q L + F + Sbjct: 182 RYFKLSRMQDLQVLTQGFESD 202 >UniRef50_B8FUA6 Helix-turn-helix type 11 domain protein n=3 Tax=Clostridiales RepID=B8FUA6_DESHD Length = 302 Score = 129 bits (324), Expect = 7e-29, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRL--- 66 RL II+ L+ E ++ +LA F VS RT++RD + + + GY Sbjct: 2 KIDRLIGIITILLQKERATIPQLAERFEVSCRTIQRDIDAIGQAGIPIVSRQGYGGGLSI 61 Query: 67 -RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC---------DESPCVIAPA 116 + ++ + A +G+ + L+ E ++ Sbjct: 62 ADGYKLDKTVLTKKELQAILTGIRSIDSISKTTYGQTLIEKFANGKAAVLAEQDMILIDL 121 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWYLVAEH-- 171 S + +L QAI R +V + G + P +L WY+ Sbjct: 122 ASWYQDSLSDKIEQLRQAIFNREKVFFVYYSDKGESERLIEPYLILFKWAAWYVYGYCLT 181 Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 + +F L+ + ++ T+ + +E + Q Sbjct: 182 KNEYRLFKLNRLWKLKNTNLTYIPRNIPEGKLEFERYFQT 221 >UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PXB7_PROST Length = 286 Score = 129 bits (324), Expect = 8e-29, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 12/196 (6%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEM 73 RL+ II + +LA+ F VS RT+ RD + L+ + S Y Sbjct: 11 RLATIILEAYLYGEVDKYELASRFKVSERTIYRDLNSLNLILEHKGNSKY--------GF 62 Query: 74 QMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG---ALSFWR 130 V + G+ P + + ++ ++ V+ N + + R Sbjct: 63 STVVEYYKMISFFGIDKYLPDFSQSFLKSIPETIQNRSVLIKFNGIEHKIKSYLKTHYER 122 Query: 131 LIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQ 190 + AI +R ++ + + + P +L+ H WYL A EG + F+L+ I + + Sbjct: 123 IRYAIDNKRECHILYKSKN-RTIYPYKLICHNTIWYLNAIEEGKLKSFSLNRIEWLDVSK 181 Query: 191 ETFRRNDSLCRLVEDP 206 +TF ++++ ++ + Sbjct: 182 KTFLPDNNIVNMLMES 197 >UniRef50_A4XCA7 Helix-turn-helix, type 11 domain protein n=7 Tax=Actinomycetales RepID=A4XCA7_SALTO Length = 332 Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 25/222 (11%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLE 58 + D RL ++ L A ++ +LA E GVS RT+ RD Y + Sbjct: 5 TAKMADVRMSRLFSMVLLLQARGAMTAAELAGEVGVSERTVYRDIIALAAAGVPVYAEQG 64 Query: 59 YQSGYCRLRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMCDE 108 GY + + + + A GL + ++ AL Sbjct: 65 RHGGYRLVDGYRTRLTGLSRAEAEALFLLGLYGPARDMGLGDVLATAQLKVSAALPAELR 124 Query: 109 S-------PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC--ERLA-PCRL 158 + + L++A+ V L + P + Sbjct: 125 DAAAQAAQRFHLDVPGWFHDSDPPPALSVLVRAVWQDLTVILRYHRHDEVTRTVQQPYGV 184 Query: 159 LIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 ++ WYLVA + V+ +D + ++ + F R +S Sbjct: 185 VLKAGIWYLVARVGADLRVYRVDRVVGVEVTDQRFVREESFD 226 >UniRef50_A4TX58 Transcriptional regulator n=2 Tax=Proteobacteria RepID=A4TX58_9PROT Length = 229 Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 60/207 (28%), Gaps = 23/207 (11%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEY--QSGYCRL 66 R A RL I+ L G + R+LA VS RT+ RD + ++ +GY Sbjct: 2 RRAERLFQIVQALRGGRLTTARQLAERLEVSDRTIYRDIAHLAASGVPIDGAAGAGYMLR 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL--------------LMCDESPCV 112 M I A G RL A L Sbjct: 62 DGFDIPPLMFDGAEIEALVIGARMAQAWAGTRLGQAAGLALAKIEAVIPDPLRQRMEASR 121 Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLV 168 + + PS ++ AI R+ + + P L W LV Sbjct: 122 LFAPDFRSPPSTRAHLDQVHTAIDSRQLLRFDYVREDGTASTRTVRPLGLFFWGPVWTLV 181 Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETF 193 A F LD + P ++F Sbjct: 182 AWCGLRDDFRTFRLDRMTDPAPTGQSF 208 >UniRef50_C6D7L1 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7L1_PAESJ Length = 320 Score = 128 bits (322), Expect = 1e-28, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 27/225 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65 RL I L+ + + ++LA + VS+RT+ RD + + + GY Sbjct: 2 KLERLMAITILLLNRKRVQAQELAEQLEVSLRTIYRDLDSLGQAGIPIVSYTGMEGGYEI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGL-----FPGLDRRLVNALLMCDESPC--------- 111 + + + Q++ + A + L GL + + L+ + + + Sbjct: 62 MDSFRLDRQLLSFDELTALFTALRGLESTNAYDRSNMDLLLSKVGAMVAQAEQGRTGEGD 121 Query: 112 --VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTW 165 + S + +L QA+ R+ + R + P L++ W Sbjct: 122 RIQVDFTPWKNSEEDQARYDQLRQAVNDRKLIRFHYTSRTGGEQEREIEPMALVLKNYAW 181 Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVF 208 YL +F L I + TF R + D Sbjct: 182 YLHGYCRLREDYRIFKLTRIRQLSIQAGTFTRRTESLEQLNDRWN 226 >UniRef50_A3CLQ0 Transcriptional regulator, putative n=3 Tax=Streptococcus RepID=A3CLQ0_STRSV Length = 299 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 18/219 (8%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL----EYQSGYCRLR 67 RL I+ L+ + +LA+ F VS+RT+ RD + L+ + + G ++ Sbjct: 4 SRLFKILYLLLEQGRTTAPELASLFEVSIRTIYRDVDKLSLVGIPIYCNPGKGGGIFLMK 63 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLF------PGLDRRLVNALLMCDESPCVIAPANPVPS 121 + + + + L GL + +L + + Sbjct: 64 DFVLDKALFSESERDELLAALQGLQILTDGEQVETLSKLQSLFQVQATSWLEVDFTDWRK 123 Query: 122 PSG-ALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174 + F + QAI RR ++ R ++ +L+ Q WY+ Sbjct: 124 KADQKELFDTIKQAILQRRVLSFSYLNGRGEREQRKIEALKLVFKSQNWYVAGFCRLRQA 183 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 F L + Q L+E F++ + + A+ Sbjct: 184 PRFFKLSRMRDCQMLEERFKQRVLDEKFSPEEWLGDAVK 222 >UniRef50_C6CRF1 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRF1_PAESJ Length = 302 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 61/210 (29%), Gaps = 20/210 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL II +L+ + L LA EF VS RT+ RD + G Sbjct: 2 KLERLISIIYKLLNNDVLPANALAEEFQVSQRTIYRDIDVICAAGFPVVSYQGNKGGFGM 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCVIAPANP 118 +M +L + L + GL + + +P + Sbjct: 62 LEGFKMDKSLLGSYDVNALVTVLKGLSTVFEDERAQGTIERLQTVGTEQRTPSLAVDFET 121 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174 S + L AIT R+ + R L P RL +WY+ Sbjct: 122 RR--SDPETLPLLRAAITERKVIRFDYINAKNERTTRELEPVRLHFKYGSWYIYGYCLTR 179 Query: 175 I--AVFTLDEIHLIQPLQETFRRNDSLCRL 202 F L + + F + + Sbjct: 180 CDYREFRLSRMVEALQTERCFEPHKEVPEE 209 >UniRef50_C9NKS1 Helix-turn-helix type 11 domain protein n=5 Tax=Streptomyces RepID=C9NKS1_9ACTO Length = 348 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 67/215 (31%), Gaps = 25/215 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL ++ L + +++ +LA E VS RT+ RD + +Y D GY Sbjct: 29 RAARLIKMVLLLQSRPSMTAAELARELEVSARTVTRDAQALSEAGVPVYADRGRAGGYRL 88 Query: 66 LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRL-------VNALLMCDE 108 + + + + A GL ++ + Sbjct: 89 VGGYRTGLTGLARHEAEALFLSGLPSALREMGLDDAASVARLKVSAALLPSLRDAPRTAS 148 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR---CERLAPCRLLIHQQTW 165 + P+ + +A+ R V LAP L++ W Sbjct: 149 QRFHLDAPGWYHDPATPELLPAVAEAVWDDRLVRARYRRTSGEVERELAPYGLVLKAGVW 208 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 YL A + V+ +D + + F R++ Sbjct: 209 YLCARAGKDVRVYRIDRFTAVAVSETRFVRDEEFD 243 >UniRef50_C5EHW4 Helix-turn-helix type 11 domain-containing protein n=5 Tax=Clostridiales RepID=C5EHW4_9FIRM Length = 309 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 19/205 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL I+S L+ E ++ LA +F VS RT+ RD + + + G + Sbjct: 2 KIDRLIGILSVLLQKEKVTAPYLADKFEVSRRTINRDIEDICKAGIPIVTTRGVNGGISI 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLD--------RRLVNALLMCDE-----SPCVIAPA 116 +M +L + LD R+L++ L + + ++ Sbjct: 62 MEGYRMDKTLLTSREMQSILAGLRSLDSVSFTGQYRQLMDKLSVGNHDLIHVDSHIMINL 121 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEH-- 171 + + +AI R G + P L+ +WY+ Sbjct: 122 SSWYKETLTPKIHLFQEAIEECRLTRFSYFSPSGETSRCIEPYTLVFQWSSWYVWGYCCL 181 Query: 172 EGHIAVFTLDEIHLIQPLQETFRRN 196 +F L+ + ++ QE F + Sbjct: 182 REDYRMFKLNRMADLELCQEHFTKR 206 >UniRef50_D0MGR2 Helix-turn-helix type 11 domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGR2_RHOM4 Length = 336 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 73/232 (31%), Gaps = 34/232 (14%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER---LMYLDL 57 M AER +R RL +I L L+ R+LA FGVS RT+ RD R + L Sbjct: 1 MKLAERTRNR-TERLFALILLLQTRPGLTARQLAEHFGVSRRTIFRDLRALSEANVPLTY 59 Query: 58 EYQSGYCRLRTAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGL 95 GY L M G + + P Sbjct: 60 AEGGGYEILEGYQLPPLMFTAREAATLLIGTEFMKRQPDASLRADADAVALKIRSVLPRS 119 Query: 96 DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRC 150 R ++ L S A ++ L +AI ++ V L Sbjct: 120 IREYIDRLQERIVIDPY-WLQTMQGSDEEAGYWYELSEAIARQQSVHLEYYVPSRDELTQ 178 Query: 151 ERLAPCRLLIHQQTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLC 200 R+ P L+ + W L+A I F LD I + L+E F Sbjct: 179 RRVDPLGLVYYTDHWNLIAYDHLRKDIRNFRLDRIQRLTVLRERFTPPRDFD 230 >UniRef50_A6LYP1 Helix-turn-helix, type 11 domain protein n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYP1_CLOB8 Length = 304 Score = 127 bits (320), Expect = 2e-28, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 65/198 (32%), Gaps = 18/198 (9%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCRLR 67 RL II L+ ++++ R+L+ F VSVRT+ RD + + G + Sbjct: 4 SRLFQIIYILLKRKSITARELSEHFEVSVRTIYRDIDALCQAGIPIYSSQGKGGGISLVD 63 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------VNALLMCDESPCVIAPANPV-P 120 + + +V L L + ++ L + + + Sbjct: 64 KFIFDKSLFSEVEQDKILLALQSLSAVGYDDINDVLSKLSNLFQKSDVNWIEVDFSNWGS 123 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGH 174 F + ++I ++ + + + P +LL + WYL Sbjct: 124 ERKQKEIFNLIKESILKQKVINFSYFSADGMKSNRYVEPFKLLFKDKAWYLQGYCLERTA 183 Query: 175 IAVFTLDEIHLIQPLQET 192 F + ++ I E+ Sbjct: 184 FRTFKITRMNDINITDES 201 >UniRef50_B3PHR5 Predicted transcriptional regulator n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PHR5_CELJU Length = 244 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 79/236 (33%), Gaps = 36/236 (15%) Query: 11 LAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRL 66 A RL + + L T L+ R+L+ VS RT+ RD + L + +E ++ GY Sbjct: 3 RAERLFQLTTLLRNRRTVLTARQLSEHLQVSERTIYRDIQSLSLSGVPIEGEAGVGYRLS 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGL---------------FPGLDRRLVNALLMCDESPC 111 M + A G + + L + L DE+ Sbjct: 63 HRYQLPPLMFDREEVEALLLGARMVSGWGDMDMARHANQAIQKILAVLPDHLRHSDETLP 122 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167 ++ P + AI +R+ + E R + P L+ + W L Sbjct: 123 LLVPNMEEVQRYYTAHSQTIRAAIRIHQRLRIDYIRADEERSSRVIEPLGLIFWGKVWTL 182 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS 221 VA F LD I + ETF ++ ++L HF I + Sbjct: 183 VAWCQLREDYRTFRLDRIQSLDMTGETFATHEQ-----------KSLKHFLHIMKA 227 >UniRef50_D2PM08 Helix-turn-helix type 11 domain protein n=2 Tax=Actinomycetales RepID=D2PM08_9ACTO Length = 324 Score = 127 bits (318), Expect = 3e-28, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 71/232 (30%), Gaps = 24/232 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCRL 66 A RL + + A ++ +LA+E +SV T RRD + ++G L Sbjct: 2 RADRLVATLLLMQARGRVTAAELASELEISVATARRDLEALSTAGIPVYPQPGRNGGWSL 61 Query: 67 ---RTAGSEMQMVPDVLIFAHRSG----LAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119 + G +A R+LV AL A V Sbjct: 62 LGGARTDLSGLTATEAQALFLLVGPAAAIAPEAKAALRKLVRALPESFRGDAEAAAEAVV 121 Query: 120 PSPSGALSFWR--------LIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWY 166 P+G + L A+ R +V L GR + P L+ WY Sbjct: 122 IDPAGWGELDKARPVVVNDLQHAVVRRLKVRLSYAGRRGAPPSERLVDPLGLVAKDDVWY 181 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218 L+A E F +D + R D V + + R + Sbjct: 182 LIAGTERGQRTFRVDRVLEATVTDRPAERPDDFDLSVAWARVVDEMEQNRSL 233 >UniRef50_C3L2F0 Transcription regulator n=4 Tax=Clostridium RepID=C3L2F0_CLOB6 Length = 315 Score = 127 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 76/245 (31%), Gaps = 37/245 (15%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 A RL I+ L + L+ +L+ + VSVRT+ RD + + + + G Sbjct: 2 RADRLISILMLLQIYKKLTASELSKKLEVSVRTIYRDIDTLSGIGVPIVTEKGINGGIKL 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFW 129 + + + L F +++ L + + I SP+ F Sbjct: 62 LGDYKTSLTGINKNELLSL---FIPTGDKILEDLGVENLKDSTILKILGNSSPNDLKEFE 118 Query: 130 R--------------------------LIQAITGRRRVTLIAE---GRRCERLAPCRLLI 160 L AI + + ++ + L P L+ Sbjct: 119 NIQNYIYIDMYTWNKPNNIVNTNILSILQNAIWNSKSLKILYRKIYETKEVELNPLGLVC 178 Query: 161 HQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFR 216 + TWYLVA + I + + I + +TF R F +P + Sbjct: 179 KRGTWYLVAVNNRIIKTYKVTSIESALLMTDTFIRPYDFNLKSYWRNSTSNFKSLIPKYT 238 Query: 217 FIQHS 221 F Sbjct: 239 FTFKV 243 >UniRef50_A8MEN8 Helix-turn-helix type 11 domain protein n=14 Tax=Bacteria RepID=A8MEN8_ALKOO Length = 299 Score = 127 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 20/208 (9%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL I+ ++ ++ +LA +F VSVRT+ RD +Y G Sbjct: 5 RLFRILYYILEKGKVTANELADKFEVSVRTIYRDMDSISSAGIPIYATQGKGGGIEIADE 64 Query: 69 AGSEMQMVPDVLIFAHRSGL------AGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 ++ + + L + L+ ++AL + + + Sbjct: 65 FVLSKSLLTENEKEQIMAALHGLENTSKLYESELITKLSALFKMRNTNWIEIDFTNWQNN 124 Query: 123 SGALS-FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGHI 175 F + AI + ++ E + P RLL Q WYL A Sbjct: 125 KIYEKIFNDIKSAIISKNIISFSYFSSNEEETNRSVKPVRLLFKGQDWYLYAFCLLREDF 184 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLV 203 F L I ++ L F D + Sbjct: 185 RYFKLSRIKQLEILSINFE--DDFDNIT 210 >UniRef50_A9AUR2 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUR2_HERA2 Length = 321 Score = 126 bits (317), Expect = 5e-28, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 28/216 (12%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYC----RLR 67 RL ++ L + + +S +LA + RT+RR ++ + +E + G Sbjct: 6 SRLLGVLELLQSRQQISGSELAQRLEIHPRTVRRYIQQLQDMGIPVEAERGIYGAYRLKP 65 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGL---------------FPGLDRRLVNALLMCDE--SP 110 + + I A GL + ++R L L+ Sbjct: 66 GQRVPPLLFTEQEILALSLGLLTIRELQFPVERATAETTLAKIERVLPAGLVQHARALQA 125 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166 + +L A+ ++V L + + P ++ ++ WY Sbjct: 126 AISIQLGIRSPRIEPAWLLQLSLAVQYCQQVQLEYLSAQQNMTERTIEPYGIVFNEGAWY 185 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 LV + VF LD I ++ L F R S+ Sbjct: 186 LVGYCDLRRAMRVFRLDRIQAMRLLDSNFERPASID 221 >UniRef50_UPI0001789485 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789485 Length = 316 Score = 126 bits (317), Expect = 5e-28, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 29/230 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCR 65 RL I L+ LS ++LA F VS +T+ RD + + G+ Sbjct: 2 KIDRLLAITVLLLNRGRLSAKELADRFEVSSKTIYRDMDTLCQAGIPIVAHQGITGGFEI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES---------------- 109 + + + + + + GL L+ + LL ++ Sbjct: 62 MEHYMIDKYWLSAEEMSTLVTAVKGLSSALEDPQMGMLLEKIKALLRRVEQGLGDEYRKE 121 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165 P V+ + L QAI +RRV + + P L + W Sbjct: 122 PVVMDFQPWGQRQGLKPAVGLLKQAIHDKRRVQMEYIDAEGSAERRTIEPASLFLKGNVW 181 Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRN--DSLCRLVEDPVFIQA 211 Y+ A +F L + I+ L E + RL D + A Sbjct: 182 YVQAFCLEREDFRLFRLSRMQDIKMLSEAYEPRPWPGKERLEWDSSWSNA 231 >UniRef50_C2U625 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillaceae RepID=C2U625_BACCE Length = 305 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 16/205 (7%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL II +L+ E LS LA EF VS RT+ RD + G Sbjct: 2 KLERLLSIIYKLLNHEVLSASMLAEEFQVSQRTIYRDIDVICAAGFPVVSYQGSNGGYGM 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP---------VP 120 +M +L + L + L + + Sbjct: 62 MDGYKMDKSLLGSYDVNSLVTVLRSLSTVFEDKRAQGTIERLQTIGPDHHVTSLSVDLET 121 Query: 121 SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174 + + +L +IT + V R + P +L + WY+ Sbjct: 122 HRTEPDTLRQLRTSITQQNVVRFDYINAKNERTTRDMEPLKLHFKYRNWYIYGFCRTRRD 181 Query: 175 IAVFTLDEIHLIQPLQETFRRNDSL 199 F L + + QETF+ + + Sbjct: 182 YREFRLSRLMNLYVTQETFQPHHEV 206 >UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 Tax=Vibrio parahaemolyticus AQ4037 RepID=UPI0001BC6CCB Length = 286 Score = 126 bits (315), Expect = 8e-28, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 8/199 (4%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64 + ++LA+RL I++RL GE LS +L A++ VS +TLRRDF ERL+ + + Sbjct: 2 SDKSEKLALRLGDILTRLFMGEVLSPEQLVADYQVSEKTLRRDFNERLVNAPIIRTNEGY 61 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124 RL + +GL+ L P N +P + Sbjct: 62 RLDPVTRNNGNANTNKVLHD-TGLSALLP-------NHYKFNGHTPVLFKNPRSESIGKF 113 Query: 125 ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIH 184 F +L + IT + L G+ E P RL+ + W+L A + + + L I Sbjct: 114 DALFRQLTEVITTHSVIDLTYNGKTFESAHPYRLVNDRGIWFLAATYCDQLHSYRLPNIS 173 Query: 185 LIQPLQETFRRNDSLCRLV 203 I ++ ++ + + + Sbjct: 174 RIHRREDKYKPSQKVHEEI 192 >UniRef50_D2BDS4 DeoR family transcriptional regulator n=2 Tax=Actinomycetales RepID=D2BDS4_STRRD Length = 332 Score = 126 bits (315), Expect = 8e-28, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 70/246 (28%), Gaps = 32/246 (13%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67 R+ ++ L + + +LA GV+ RT+RRD ++ GY Sbjct: 13 ERVLTLLGLLQQRQVWTGPELADRLGVTPRTVRRDVERLRTLGYPVHASQGVGGGYQLGP 72 Query: 68 TAGSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRLVNALLMCDESPCV 112 ++ D A L LDR L L + Sbjct: 73 GQDLPPLLLDDEEAIATVVSLLAGAGGAVTGAGDAALRALTKLDRVLPTRLRHEVRALSG 132 Query: 113 IA-PANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIHQQTWYLV 168 +P L + R+ P RL+ ++ WYL+ Sbjct: 133 SVESFGGGRTPVDPEVLMTLARVCRDEVEAGFGYPSGSEVRRRRVEPYRLVASERRWYLL 192 Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRN--DSLCRLVEDPVFIQALPHFRFIQHSLLT 224 A F +D + + F V++ V + PH Q L Sbjct: 193 AYDLDRDDWRSFRVDRMTDVSARTWRFSPRAAPDAAPYVQEGVASRVYPH----QARFLV 248 Query: 225 FVPADS 230 PAD+ Sbjct: 249 HAPADT 254 >UniRef50_C6PV47 Helix-turn-helix type 11 domain protein n=2 Tax=Bacteria RepID=C6PV47_9CLOT Length = 313 Score = 126 bits (315), Expect = 9e-28, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 26/213 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCR 65 RL II L+ + +S +LA F V++RT+ RD + + G Sbjct: 2 KIDRLVSIIMILLERKKISAPELAKMFEVNLRTIYRDIDTINQAGIPIITYRGANGGIGI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-RRLVNAL--------------LMCDESP 110 + E ++ I GL + + + L+N + + + Sbjct: 62 MEKYKIEKKLFTLSDITELLIGLKSIHSTISNQELLNTMAKLKGLVPKDELQQVEKKTNR 121 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWY 166 I + LS ++ AI ++ R ++ P RL++ +WY Sbjct: 122 IKIDHTPWFGNKRIQLSLKKIKTAINKNSFISFKYFDRLGQKSERKIEPYRLVLKNSSWY 181 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197 + +F + I ++ L+ETF + Sbjct: 182 IQGYCTLREDFRIFEVSNISSLKVLEETFIPRE 214 >UniRef50_D2QLY3 Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLY3_9SPHI Length = 315 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 27/230 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-YCRLRT 68 RL+ I+ L + ++LA FG+S+RT+ RD R + + ++G L Sbjct: 3 RLDRLTAILIHLQTKRVIRAQELADRFGISLRTVYRDVRSLEEAGVPIGAEAGVGYFLTD 62 Query: 69 AGSEMQMVPDVLIFAHRSG-----------LAGLFPGLDRRLVNAL--LMCDESPCVIAP 115 M + A G + F ++ + L + + A Sbjct: 63 YNLPPVMFTNAEASALLLGGKLIEKWTDQSVRTEFESALYKIKSVLKRPDQEHLDSLEAH 122 Query: 116 ----ANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWY 166 P+ G S ++ AI + + L R+ P L ++ W+ Sbjct: 123 INVAKPLYPTTEGEGSLNKIQHAIAQQHVLDLQYHSNYNNAETQRRVEPVGLYHYRMNWH 182 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSL-CRLVEDPVFIQALP 213 L+A F +D I + E F R + L + D V Q LP Sbjct: 183 LIAFCQIRQDYRDFRVDRIRQLTDTAERFSRREHLSLQEYLDRVGKQDLP 232 >UniRef50_A4W669 Regulatory protein, DeoR n=3 Tax=Enterobacteriaceae RepID=A4W669_ENT38 Length = 303 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 7/209 (3%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 MT R R A RL I+ L + L +F ++ RT+ RD + Sbjct: 1 MTTPARS--RSAERLVDILMELHINGVVHRSDLMQKFKITERTVYRDLNALSPIV-QHAG 57 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 +G RL A + A+ FP L E ++ N Sbjct: 58 NGQYRLIHATPSSRGQGLHNAVANLLNADSFFPDRGAAFWQNLESRVEENHILILNNDAE 117 Query: 121 SPSGAL---SFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177 + ++I R + + + + P +L+ + WYL A G + Sbjct: 118 HTVQKDIRLYLTAIEKSIKNRHVCQITYKDKT-RSVNPYKLINKKNIWYLQATENGRLKS 176 Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDP 206 F+L +I +ETF + L+E Sbjct: 177 FSLSQISWFDIQKETFILDPHTQELLEKN 205 >UniRef50_D2QV53 Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QV53_9SPHI Length = 324 Score = 125 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 78/253 (30%), Gaps = 28/253 (11%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ-- 60 + RL+ RL +++ L ++ +LA F VS RT+ RD R + + Sbjct: 2 NDSETTRLS-RLVALLTLLQTKRMVTATELANRFSVSTRTIYRDIRALESGGVPIVTHEG 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSG----------LAGLFPGLDRRLVNALLMCDESP 110 GY L + A + G + L + Sbjct: 61 KGYSLLEGYRLPPILFTREEAIALLTAEKLASRLTDAATAQLSGAAMDKLRTALRHSDRD 120 Query: 111 CV------IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLL 159 + I P + ++ +L+ A+T R V + + + P L Sbjct: 121 YLETMAPRILVMEPASASERPNTYQQLVTAVTAHRVVRITYQAAETGESTDREIEPIGLY 180 Query: 160 IHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRF 217 + Q W++VA F LD I + + E+F + + Sbjct: 181 LSQ-HWHVVAFCRLRQAFRNFRLDRISSLALVDESFPARTETLQQYWTEEAKRREKEKVV 239 Query: 218 IQHSLLTFVPADS 230 I + +PA Sbjct: 240 IHFNPSAVLPAQV 252 >UniRef50_C5REL4 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5REL4_CLOCL Length = 304 Score = 125 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 20/207 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 RL I+ ++ E ++ ++LA + VSVRT++RD +Y + GY Sbjct: 2 KIDRLFSILLMIINKEKITAKELAEHYQVSVRTIQRDIDTLSMAGIPIYAESGKNGGYQL 61 Query: 66 LRTAGSEMQMVPDVLIFA---HRSGLAGLFPGLDRRLVN------ALLMCDESPCVIAPA 116 L +M + L + P LD + ++ LL ++ ++ Sbjct: 62 LEGYKLDMNFLNTKEAKIIRAILDNLEKIAPYLDMKTISNKFSSTHLLDNQDNKLIMKLN 121 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEH- 171 + + + +A ++ + + P L++ WY+ Sbjct: 122 PLINEENLKKHLELIAKARDNYHKICMKYVDMNFQVTDRIICPYTLVMMGTVWYVYGYCE 181 Query: 172 -EGHIAVFTLDEIHLIQPLQETFRRND 197 +F L I L E F + Sbjct: 182 LREDFRIFKLSRIIECIILNEEFVVKE 208 >UniRef50_UPI0001BC5E8A helix-turn-helix, type 11 domain-containing protein n=1 Tax=Fusobacterium ulcerans ATCC 49185 RepID=UPI0001BC5E8A Length = 303 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 18/202 (8%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68 RL ++ L+ + ++ ++LA F VSVRT+ RD +Y G + Sbjct: 5 RLFEMLYILINRKHITAKELALHFEVSVRTIYRDIDILCSSGIPVYTSQGSGGGIFIEKN 64 Query: 69 AGSEMQMVPDVLIFAHRSGLA---GLFPGLDRRLVNALLMCDESPCV----IAPANPVPS 121 + D + L L + +L++ L + + I + S Sbjct: 65 YVLNNSVFTDEEQEKIITSLQSIPSLNATDNSKLISKLSGLFKKNYLNWIEIDFSRWGDS 124 Query: 122 PSGALSFWRLIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWYLVAEHEGH--I 175 ++ + +I G ++ ++ P +L +WYL Sbjct: 125 DHDNQNYILIKNSIIGHTIISFAYISSYGEVTLRKICPVKLFFKSSSWYLQGFCLDKKDY 184 Query: 176 AVFTLDEIHLIQPLQETFRRND 197 F + + ++ E F N+ Sbjct: 185 RTFKISRMSSLKASPEIFNINE 206 >UniRef50_B8DCU5 HTH domain family n=6 Tax=Listeria monocytogenes RepID=B8DCU5_LISMH Length = 318 Score = 124 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 22/216 (10%) Query: 4 AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG 62 + RL II L+ E +S ++A F VS RT+ RD + + + +G Sbjct: 7 KTKEKKMKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAG 66 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPC 111 ++ +L + + G+++ L + +L P Sbjct: 67 TKGGIGIMPTYKVDKKLLTVDDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPP 126 Query: 112 ----VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQ 163 + +N L AI + V L + + P LL + Sbjct: 127 KSSISLDFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQTIRKTEPYHLLFRNR 186 Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197 +WYL F + I ++ L+ETF Sbjct: 187 SWYLQGYSLERSDFRTFKMSRIVELKTLEETFEARP 222 >UniRef50_Q73PA8 Transcriptional regulator, putative n=2 Tax=Bacteria RepID=Q73PA8_TREDE Length = 306 Score = 124 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 24/241 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCR---- 65 R+ II L+ E +S + LA F VSVRT++RD + + G Sbjct: 2 KFERILEIIIYLLNHEKVSAKYLAEYFDVSVRTIQRDMVSIAEAGIPVYTLGGRYGGYAV 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE--------SPCVIAPAN 117 L + + + S L L +N+L+ + Sbjct: 62 LENYKIKNINIKNSEQQIIISALESLATSYTNDKLNSLIEKYNAIIEKEGGQKVFWDFSV 121 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--H 171 + S L +AI G+ + P + WYL A Sbjct: 122 TKENKKVQDSNMLLEKAIGGKNYIVFDYRNSEGKSSHVCAEPLAIHYKWYAWYLFAYPKE 181 Query: 172 EGHIAVFTLDEIHLIQPLQET-FRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADS 230 F + + + +E F ++ + + +++ L +++ + + F + Sbjct: 182 TKEYRTFKVARMQNLVISKERSFIKHGDIQQKMKEAE----LAYYKTCINIEIIFSEKEI 237 Query: 231 P 231 P Sbjct: 238 P 238 >UniRef50_B2A042 Helix-turn-helix type 11 domain protein n=1 Tax=Opitutus terrae PB90-1 RepID=B2A042_OPITP Length = 316 Score = 124 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 68/224 (30%), Gaps = 36/224 (16%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRLR 67 RL ++ L + +LA F V++RT+ RD + + ++ GY +R Sbjct: 3 RTDRLVAMVMYLQGRRVVKAEELARHFEVNIRTIYRDVAALGEAGVPVAGEAGVGYSLVR 62 Query: 68 TAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGLDRRLVNALLM 105 M A G + + P + + L Sbjct: 63 GYHLPPVMFTAEEAIALFIGGEMVKQFADASLTGPMDSAVLKIRSVLPRERQDDLERLTR 122 Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLI 160 I + + + + + QAI R + + GR + P + Sbjct: 123 AT----AIFGSPRLSTGIDQRTLLPIEQAIVSSRVLRMTYRGRARAEETRRDVEPLGVTY 178 Query: 161 HQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRL 202 H WYLVA + F LD + ++ L E F Sbjct: 179 HDGVWYLVAWCRLRKDLRYFRLDRVRALEVLGERFAPRPDFSLR 222 >UniRef50_C5BNS8 HTH domain protein n=2 Tax=Gammaproteobacteria RepID=C5BNS8_TERTT Length = 245 Score = 123 bits (309), Expect = 4e-27, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 24/208 (11%) Query: 10 RLAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCR 65 R A RL I++ L T L+ R++A + VS RT+ RD + L + +E ++ GY Sbjct: 2 RKAERLFQILNLLRNRRTVLTARQIAEQLAVSERTVYRDIQALSLSGVPIEGEAGVGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL--------------LMCDESPC 111 R M + A G + DR+L A L E Sbjct: 62 QRQFDLPPLMFDRDEVEALLLGARMIRAWSDRQLAAAASSALNKILAVLPPQLRELEETS 121 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYL 167 I + S ++ ++ AI ++++ + E + P L TW L Sbjct: 122 AIKVPDYQQQLSVSVHSEQIRAAIRSQQKIAIDYEDAQAQLSHRCVLPLGLFFWGATWTL 181 Query: 168 VAEHEGHI--AVFTLDEIHLIQPLQETF 193 V E + F LD I + L E F Sbjct: 182 VGWCELRLAYRAFRLDRIRHFELLAENF 209 >UniRef50_B1C6Z1 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6Z1_9FIRM Length = 301 Score = 123 bits (309), Expect = 4e-27, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 73/203 (35%), Gaps = 19/203 (9%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYC----RLR 67 RL I+ L+ E ++ ++LA E VS RT+ RD + + + Q GY L+ Sbjct: 4 DRLIQIVFLLLRHENITAKQLAKELCVSARTIYRDINILSIAGIPITSQKGYGGGLSLLQ 63 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVNAL---LMCDESPCVIAPANPVP 120 + L L +P D+ L +S + + Sbjct: 64 GFSLDKSYFTQEEQKNIIQALQILKSSNYPNADKSLNKIAGLFSHNLQSEWLEIDFSYWG 123 Query: 121 SPS-GALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE--HEG 173 SP + L +AI + +T + + P +L+ WYLVA H+ Sbjct: 124 SPEKERNNITVLERAIINKYVITFTYFNAELTITNQIVEPLKLVFKSHAWYLVAYSKHKN 183 Query: 174 HIAVFTLDEIHLIQPLQETFRRN 196 I F + I +Q + F R Sbjct: 184 DIRTFKMSRIRELQITDQLFDRE 206 >UniRef50_A9KM28 Helix-turn-helix type 11 domain protein n=2 Tax=Clostridium RepID=A9KM28_CLOPH Length = 302 Score = 123 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 19/218 (8%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCR 65 RL II+ L + ++ LA +F VS RT+ RD + + + G Sbjct: 2 KIDRLIGIITVLQNNKKVTAPYLAKKFEVSRRTINRDIEDICKAGIPIVTTQGNDGGISI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFP----GLDRRLVNALLMCDES-----PCVIAPA 116 + + + + A GL +L++ + + + Sbjct: 62 MEGFKLDTTIFTTEELEAILVGLKSFDSVSAHSASHKLIHKISPNRPTLMSLADSISIDL 121 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWYLVAEH-- 171 + S A +L +AI +R V G +++ P +++ +WY+ Sbjct: 122 SSHYKDSLAPKIAQLREAIQQKRVVMFHYYYKKGEDDKKIEPYQIVFQWSSWYVFGFCLK 181 Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209 + ++ L+ + +Q +E F + + ++ I Sbjct: 182 KREFRLYKLNRLWDLQTTEEEFIQREVPEEFLDFNRHI 219 >UniRef50_Q7MF56 Predicted transcriptional regulator n=10 Tax=Vibrio RepID=Q7MF56_VIBVY Length = 228 Score = 123 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 24/208 (11%) Query: 11 LAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRL-- 66 + RL +++ L + ++ ++LA VS RT+ RD + + + ++ ++G L Sbjct: 3 KSERLFELLTLLRSKRYAVTAKQLAETMEVSERTIYRDIQSLIHSGVPIQGEAGVGYLLQ 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--------------VNALLMCDESPCV 112 + M + + A G+ + D L + L Sbjct: 63 SGSHLPPLMFTEKEMMALELGMRMVRAWSDAELADASRSASIKILSVLPDKLKQQVEDFP 122 Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLV 168 + A L AI +V+L + ++ P + W LV Sbjct: 123 LIVPEFHTHSETAKRGQLLRHAIEHHFKVSLDYQDENGQITERKIQPLGQFFWGKVWTLV 182 Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETFR 194 A F LD I ++ E F Sbjct: 183 AWCELRQDYRQFRLDRIQALRMHDEEFE 210 >UniRef50_B4D3V6 Helix-turn-helix type 11 domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3V6_9BACT Length = 322 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 25/215 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRLR 67 RL ++ L + + ++ F V+ RT+ RD + + ++ GY +R Sbjct: 3 RTDRLVALVMLLQSRRVTTAAQMGEHFEVTERTIYRDLAALGEAGVPILGEAGVGYSLMR 62 Query: 68 TAGSEMQMVPDVLIFAHRSG---------------LAGLFPGLDRRLVNALLMCDESPCV 112 M A +G + + L L Sbjct: 63 GYHLPPVMFSPDEAMALVTGSLLTERMTDDTTRAAIRSALDKVSVVLPADLQRRVHRLRE 122 Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYL 167 + G ++ L A+ R + + G + P L+ + W+L Sbjct: 123 SMQISGRKPGVGPVALSSLQMALADARVLRMRYHGLRRDETTTREVEPLGLVFYLDHWHL 182 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 +A + F +D IH ++ E Sbjct: 183 IAWCRLREDVRDFRVDRIHAMEVCAEPVTPRPDFD 217 >UniRef50_A4C3H1 Predicted transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A4C3H1_9GAMM Length = 231 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 69/214 (32%), Gaps = 25/214 (11%) Query: 10 RLAVRLSLIISRLVAGETL-SVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCR 65 R A RL II+ L T+ + +++A + VS RT+ RD + L + +E ++ GY Sbjct: 2 RKAERLFQIITLLRGRRTVITAKQIAQQLEVSERTVYRDIQALILSGMPIESEAGIGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSG---------------LAGLFPGLDRRLVNALLMCDESP 110 M + A G A + L L Sbjct: 62 QPKFDVPALMFNPDELDALLLGARMVQGFGSEQLAKSAASALNKIHSVLPEQLHRQIVQQ 121 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166 + AI ++ LI + + + P L+ + W Sbjct: 122 DERLLVPNWHLKEATQYSDLIRLAIKQHLKLALIYQDEKLNLSERTVLPLGLIFWGRAWT 181 Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDS 198 LVA E +F LD I + L TF + Sbjct: 182 LVAWCEKRSDYRLFRLDRITQLTTLTCTFSLHQH 215 >UniRef50_A0AFG8 Complete genome n=16 Tax=Listeria RepID=A0AFG8_LISW6 Length = 307 Score = 122 bits (307), Expect = 7e-27, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 22/209 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 RL II L+ E +S ++A F VS RT+ RD + + + +G Sbjct: 2 KIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLMMANIPIYTIAGTKGGIGI 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCV----IA 114 ++ +L + + G+++ L + +L P + Sbjct: 62 MPTYKVDKKLLTAEDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLD 121 Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE 170 +N L AI V L + R P LL ++WYL Sbjct: 122 FSNLSMKKELNAKVESLYLAIKKHHLVELSYIDRTGKQTIRRTEPYHLLFRNRSWYLQGY 181 Query: 171 --HEGHIAVFTLDEIHLIQPLQETFRRND 197 F + I ++ L+ETF Sbjct: 182 NLERNDFRTFKMSRIVELKTLEETFEARP 210 >UniRef50_B7HZL2 HTH domain family n=31 Tax=Bacillus RepID=B7HZL2_BACC7 Length = 313 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 66/234 (28%), Gaps = 32/234 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY--QSGYCRLR 67 RL I+ L +T++ + LA +F S+RT+ RD + + GY + Sbjct: 3 RTDRLLAILIELQRKQTVTAQSLAEKFETSIRTIYRDMDALNESGVPIYSMPGHGYSLMD 62 Query: 68 TAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGLDRRLVNALLM 105 + G L + P ++ L Sbjct: 63 GYFLPPIQLTPEEAVTLLLGGDYIEKTFTSSFSVHARSAKEKLEIVLPADQQKKAQELRE 122 Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-----ERLAPCRLLI 160 + L ++I + ++ R + P L+ Sbjct: 123 TFRFLSPMFSHQQSEQEKLENQLLLLQESIQKEQAISFSYRKPRETTKIKRTVHPYGLVN 182 Query: 161 HQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 WY+VA I F LD + +Q QE F + P + + Sbjct: 183 ISGIWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDFSLQNYKPESNRTV 236 >UniRef50_B5HKG2 Truncated DeoR-family transcriptional regulator n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HKG2_STRPR Length = 273 Score = 122 bits (306), Expect = 8e-27, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 25/211 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL ++ L + +++ +LA E VS RT+ RD +Y D GY Sbjct: 2 RAARLIKMVLLLQSRPSMTGAELARELEVSERTVTRDALALSEAGVPVYADRGRAGGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMCDES------ 109 + + + + A GL ++ ALL + Sbjct: 62 IGGYRTRLTGLGRDEAEALFLSGLPGALRDMGLEDAASAARLKVSAALLPSLRNAPESAA 121 Query: 110 -PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQTW 165 + P L +A+ RRV L P L++ W Sbjct: 122 RRFHLDAPGWYQEPKTPDLLPVLAEAVWDDRRVQAAYRRGDTEVERLLEPYGLVLKAGVW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRN 196 YL A +G + V+ +D + E F R+ Sbjct: 182 YLCARADGTLRVYRIDRFSSAEADGERFERD 212 >UniRef50_Q7X2G0 Putative repressor n=3 Tax=Streptomyces RepID=Q7X2G0_9ACTO Length = 341 Score = 122 bits (306), Expect = 9e-27, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 74/253 (29%), Gaps = 35/253 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG----YCR 65 +A R ++S L + LA GVS RT+RRD + + G Y Sbjct: 2 IANRTLELLSLLQTQREWTGDGLAERLGVSPRTVRRDINRLRELGYPVTATKGPSGSYRL 61 Query: 66 LRTAGSEMQMVPDVLIF----------AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 R A +V D A +G+ + L Sbjct: 62 SRGARLPPLIVDDEQALAIALSLQTAPASVTGMGDATKRALNSIQELLPPHLAHRLATFS 121 Query: 116 ANPVPSP-------SGALSFWRLIQAITGRRRVTLIAEGRRCERL-------APCRLLIH 161 + + +L A R V + + P RL++ Sbjct: 122 VEQIENAWELAPPQVDPSLLAQLSSAAQQRDLVRFSYRSIHHDSMQDGEVLAEPHRLVVW 181 Query: 162 QQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETF----RRNDSLCRLVEDPVFIQALPHF 215 WYLVA + + +D I + P F ++ + R V++ P Sbjct: 182 SGRWYLVAYDQQRSSWHAYRVDRIKDLAPTAWRFGEREGPDEDITRFVQNQPDRGDTPDT 241 Query: 216 RFIQHSLLTFVPA 228 ++L PA Sbjct: 242 WPCWGTVLMECPA 254 >UniRef50_Q0S1T7 Probable transcriptional regulator, DeoR family protein n=2 Tax=Rhodococcus RepID=Q0S1T7_RHOSR Length = 320 Score = 122 bits (306), Expect = 9e-27, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 76/244 (31%), Gaps = 27/244 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSGYCRL 66 A RL + + A ++ ++A E VSV T RRD + G L Sbjct: 2 RADRLVATLLLMQARGRVTAAEVADELDVSVATARRDLEALSAAGIPVYPQSGRGGGWSL 61 Query: 67 ---RTAGSEMQMVPDVLIFAHRSGLAGLFPGLD----RRLVNALLMCDESPCVIAPANPV 119 + G A G R+LV AL + A + Sbjct: 62 VGGARTDLSGLSATEAQALFLLVGPAAAVSGEAKAALRKLVRALPQTFRADAEAAATATM 121 Query: 120 PSPSGALSFWR--------LIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167 P+ R L A+ RR+V LI R + P L+ WYL Sbjct: 122 IDPTRWGERDRRRPEMVDLLQAAVIRRRKVRLIYTNSARQRSERLVDPWGLVDKDDIWYL 181 Query: 168 VAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRF-IQHSLL--- 223 +A E F +D I + ++ R D + + R ++L Sbjct: 182 LAGTERGQRTFRVDRIVHAESTEQPGERPDDFTLAAAWEEVVGEVEQRRSTTWATVLIDA 241 Query: 224 TFVP 227 FVP Sbjct: 242 RFVP 245 >UniRef50_B1C2N9 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2N9_9FIRM Length = 306 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 17/217 (7%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67 RL II L+ + +LA + VSVRT+ RD +Y+ G Sbjct: 13 SRLFRIIYHLMENGKSTAPELAEKLEVSVRTVYRDIDIISSAGVPIYVTTGRNGGIQIAD 72 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----VNALLMCDESPCVIAPANPV-PS 121 + + ++ D + L + D ++A+ + + Sbjct: 73 SFVLDRLLLSDKEKEDIITALRSVSIVDDHNRDTLSKLSAIFNTKSENWLEVDFSRWGNK 132 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEHEGH--I 175 F ++ +AI + + ++ R + P +++ ++WY+ A Sbjct: 133 SQDNTMFQKIKEAIISHKMLCIVYANTRGEVIERVICPLKMVYKAKSWYIKAFCMNKSDF 192 Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 +F L I + +++ F + E V + + Sbjct: 193 RIFKLTRIIQARNMEKNFSPMEFPQEKKETKVNYENV 229 >UniRef50_Q11X99 Transcriptional regulator, DeoR family n=2 Tax=Sphingobacteriales RepID=Q11X99_CYTH3 Length = 231 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 29/228 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL---MYLDLEYQSGYCRLR 67 RL +I+ L A + +S K+A +F +S RT+ RD + + + E GY + Sbjct: 5 RIDRLLGMITLLQAKKFVSAEKIADKFKISKRTVFRDIKAICEQGIPVGSEPNKGYFIVD 64 Query: 68 TAGSEMQMVPDVLIFAHRS-----------GLAGLFPGLDRRLVNALLMCD-----ESPC 111 + + A ++ + ++ L D Sbjct: 65 GYFLPPVLFNNDEANALLLTESLVKGFADKSISKHYSNALDKIKAGLKQVDKDKLEHMQD 124 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYL 167 I P + L A++ ++ + + + + + P L+ + +W+L Sbjct: 125 AIKFQLPERMNNDFEYLSILQVAVSDKKIIYIDYKNNKEEVSKREIEPIGLIFYAFSWHL 184 Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 + F + I ++ F++N + +++ LP Sbjct: 185 IGWCHHRKAYRDFKVSRIIQMKNTGVPFKKNKH----MPLSEYMKELP 228 >UniRef50_Q0S564 Possible transcriptional regulator n=4 Tax=Rhodococcus RepID=Q0S564_RHOSR Length = 318 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 25/215 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQ----SGYCR 65 + RL ++ RL + ++LA E GVSVRT+ RD + L + G Sbjct: 2 RSSRLVEVMLRLEGSRGATAQQLADELGVSVRTVYRDVTALSAAGVPLWTESGPGGGIRL 61 Query: 66 LRTAGS----------EMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 L S M+ V A GL + +L+ AL + + + Sbjct: 62 LDGWQSKLGGMTGAETSALMLLGVPSIADDLGLRDVAAAAQSKLLGALPVPLRAGAQLWR 121 Query: 116 AN-------PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIHQQTW 165 P + ++ RR+ + L P L+ W Sbjct: 122 DRLYVDAPGWFDGPRDNGELPVVASSVLEGRRLGIRYRKGSRSAARTLDPLGLVAKAGVW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 YLVA+H G + + I L++ R D+ Sbjct: 182 YLVAQHRGRTLSYRVSRISDATVLKQASVRPDNFD 216 >UniRef50_A4J6Q1 Transcriptional regulator-like protein n=2 Tax=Peptococcaceae RepID=A4J6Q1_DESRM Length = 350 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 38/238 (15%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAG---ETLSVRKLAAEFGVSVRTLRRDFRERLMYL-- 55 MT+ ++ +RL++II + ++V +L +F V+ R + RD L Sbjct: 1 MTERAKKDATKGLRLNMIIDLINKRTPYGGVTVNELMDKFEVAERQVYRDLNTIANDLRV 60 Query: 56 DLEYQSGY--------CRLRTAGSEMQMVPDV------LIFAHRSGLAGLFPGLDRRLVN 101 L Q + L L+ S L G L LV+ Sbjct: 61 PLVKQERHIEGIKKTCYCLEVGYLPSLSPEKATVLFLSLLQQKGSALTGHLNELKDALVS 120 Query: 102 ALL-----------MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----- 145 L ++ + V F +L+QA+ RV + Sbjct: 121 TLFKYHYNPKELAVEKLQNRIHLVEETLVEPEQVGEMFSKLVQALKVCYRVKIKYFVTHS 180 Query: 146 EGRRCERLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQP-LQETFRRNDSLC 200 + + P L+ +Q WYLV + I VF +D+I + P ETF+ Sbjct: 181 QKETERVVEPYGLICKRQNWYLVGQCLERNAIRVFRVDQIRDVFPYTSETFQYPTDFD 238 >UniRef50_A4BKA3 Predicted transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BKA3_9GAMM Length = 235 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 25/222 (11%) Query: 10 RLAVRLSLIISRLV-AGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCR 65 A RL I++ L + ++ ++L+ VSVRT+ RD D+E ++ GY Sbjct: 2 TKAERLLAILNLLRGRHQAMTAQQLSEHLDVSVRTIYRDIEALCRQGADIEGEAGIGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL----------VNALLMCDESPCVIAP 115 + A G + D L V ++L + Sbjct: 62 TDRGHLPPLTFTIDELEALTFGARLVKASADPTLAQAADQALQKVRSVLPAHRQHEIERR 121 Query: 116 ANPVPSPSGALSFW-----RLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWY 166 P+ + + + QAI R V+ + + P L+ W+ Sbjct: 122 RAPMLVATHTSTHLSQYAAEIRQAIAAERLVSFGYQDEKRRQTDRTVQPLGLVYWGYCWH 181 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206 LVA VF L+ + ++ + F R ++ + Sbjct: 182 LVAWCLLRESYRVFRLERLQHLEVTDQRFCRPEATIQQYLQE 223 >UniRef50_C4RGC2 Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RGC2_9ACTO Length = 323 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 29/238 (12%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLE----YQSGYCRLRT 68 R+ ++ L + L +LA G VRT+RR + + +E GY R Sbjct: 7 RVLTLLELLQSHTRLPGSELADRLGTDVRTVRRYAAHLRELGIPVEAERGRHGGYRLARG 66 Query: 69 AGSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRL---VNALLMCDESP 110 ++ + A GL +G ++R L + L Sbjct: 67 YRMPPLVLTNDEALAVVVGLLAAERLGMSMTTPANSGALAKIERVLPHSLREPLAAMRET 126 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166 L QA R V + + + L P ++ H+ WY Sbjct: 127 LSFTTNAVTAQAPETSVLLALAQASRARTTVGISYLSWHQDQTERDLDPYGVVFHRGRWY 186 Query: 167 LVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 V + F +D I + +TF D + + +P+ ++ + Sbjct: 187 AVGRDHRHDSLRTFRIDRIASVTTRTQTFTAPDDFDPVTHLTSALAQVPYRWDVEVLI 244 >UniRef50_C5BZX6 Helix-turn-helix type 11 domain protein n=2 Tax=Actinomycetales RepID=C5BZX6_BEUC1 Length = 313 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 74/238 (31%), Gaps = 24/238 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSGYCRL 66 A RL + + ++ +LA E VSV T RRD + G +L Sbjct: 2 RADRLVAALLLMQTRGRITAAQLADELEVSVATARRDLEALSTAGVPVYPQPGRGGGWQL 61 Query: 67 ---RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPC------------ 111 + +G A R + L+ +P Sbjct: 62 VGGARTDLTGLTSSEARALFLLAGPAASRDPGARSALRKLVGALPAPFRADAEAAAAAVV 121 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167 V S + L A+ RR+VTL GR + P L+ WYL Sbjct: 122 VDTAGWGERSRTRPPLVDTLQDAVVRRRKVTLDYVSPGRGRSRRLVDPWGLVDKDDVWYL 181 Query: 168 VAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC-RLVEDPVFIQALPHFRFIQHSLLT 224 VA + F +D I + +E R L V + V + + ++LT Sbjct: 182 VAGTDKGRRTFRVDRIAGVTLSEEAAERPAELELERVWESVVAEMEERRSLVPATVLT 239 >UniRef50_A8LFK5 Helix-turn-helix type 11 domain protein n=5 Tax=Actinomycetales RepID=A8LFK5_FRASN Length = 337 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 74/246 (30%), Gaps = 41/246 (16%) Query: 15 LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRLRT----A 69 + ++ L +G T +V +LA GV RT+RR + + + +E G Sbjct: 8 VLTLLELLQSGGTRTVAELADRLGVDGRTVRRYVQHLIDLDVPVESVRGRYGGYRLAAGY 67 Query: 70 GSEMQMVPDVLIFAHRSG-----------------------LAGLFPGLDRRLVNALLMC 106 M+ D A G + + P R ++A+L Sbjct: 68 RLPPLMLNDDEALAVLLGLIASRRAGLLTTTGTASETAAAKIRRVLPERLARGLDAVLDS 127 Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQ 162 + + + A+ R +++ R L P L+ H Sbjct: 128 L----AFTAPPGEATAAETAVVLPIADAVRHHRPISIRYTAADGRRSERTLHPYGLVAHN 183 Query: 163 QTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220 WY+ G F LD I + L +F D L + L + + Sbjct: 184 GRWYVTGADPGIGEDRTFRLDRIEHARTLPGSFEPPDGLD---PAQRVLSGLANAPYRHE 240 Query: 221 SLLTFV 226 +L Sbjct: 241 VILRIQ 246 >UniRef50_A5I226 DeoR-family transcriptional regulator n=13 Tax=Clostridium RepID=A5I226_CLOBH Length = 314 Score = 121 bits (304), Expect = 1e-26, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 79/241 (32%), Gaps = 35/241 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCRLRT 68 RL I+ L+ E +S +LA +F VSVRT+ RD L + + Q G+ + Sbjct: 5 RLLAIVVMLLNREKISASELAEKFEVSVRTIYRDIEAINLAGIPIVSQIGNNGGFYIIDN 64 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRR-------LVNALLMCDESPCVIAPANPVPS 121 Q++ + + L + LD + V ++ ++ + Sbjct: 65 YKINHQLLTLEDMISIIEALKNMNKFLDNKNVEMAIEKVKNIVPKEKKEVFDLHFEQMCI 124 Query: 122 PSGALSFWR----------LIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYL 167 + F + + A+ + + + + P L+ +WYL Sbjct: 125 DTLPWGFKKCEEENLKYKIIYDAVDNKNCIAFDYRNSKGEYNWREIEPLTLVFKGFSWYL 184 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCR-LVEDPVFIQALPHFRFIQHSLLT 224 + + +F L + + ++ + + +I + +L Sbjct: 185 FSFCKLKNDYRLFKLSRMENLTV------PHEKINENRISYKEYINISESEQVPTRVVLK 238 Query: 225 F 225 F Sbjct: 239 F 239 >UniRef50_Q12H80 Helix-turn-helix, type 11 n=7 Tax=Proteobacteria RepID=Q12H80_POLSJ Length = 316 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 74/237 (31%), Gaps = 28/237 (11%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTAGSE 72 R+ ++ L A LS +LA V RTLRR + + + + + G + + Sbjct: 7 RVLTVLELLQAHGRLSGAELARRLEVDGRTLRRYIAKLESLGIPVVAERGRYGCYSLVAG 66 Query: 73 MQMVPDVLIFAHRSGLA-GLFPGLDRRLVNALLMCDESPCVIAPANP-----VPSPSGAL 126 ++ P + L+ GL L A + + P G Sbjct: 67 FKLPPMMFTDDEALALSIGLVAARGLGLAEAAPAVQSAQAKLERVMPGKLKNRIRALGET 126 Query: 127 SFWRLIQAI---------------TGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYL 167 L +A+ G +RV L + P L WY+ Sbjct: 127 VTLDLTRAVAPGDNTALLALSAAAHGWQRVHLSYQSADGVVTERDFDPYGLAYRGGRWYV 186 Query: 168 VAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 V G + F LD + +QPL F + + + +P ++ L Sbjct: 187 VGLCHLRGGLRSFRLDRVQQVQPLNAVFTPPADFNAVQHLALGLATMPRAITVRVLL 243 >UniRef50_B6R343 Helix-turn-helix, type 11 domain protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R343_9RHOB Length = 227 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 63/210 (30%), Gaps = 21/210 (10%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRL-- 66 R A RL +++ + +LA VSV T+ RD + +E ++G L Sbjct: 2 RRAERLFRLVNEMRTRGVSRANELAEHLEVSVSTIYRDIAHLQASGMPIEGEAGVGYLLR 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126 I A GLA + D LV+A PA + A Sbjct: 62 PGFDLPNTTFTHDQIDALAVGLAFVESTGDPALVSAAREVRAKIQAGLPAPEERKLADAP 121 Query: 127 SFW------------RLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE 170 + L +AI ++ V + RL P + W A Sbjct: 122 YYSLQSKNSAPADVGVLREAIRTQQVVEITYTNASGSTSTRRLCPLVIWNLTDGWMFSAW 181 Query: 171 H--EGHIAVFTLDEIHLIQPLQETFRRNDS 198 F D I + E F ++ Sbjct: 182 CELRQDFRTFRFDRIAQLTVTNEHFIADED 211 >UniRef50_C5BVH8 Helix-turn-helix type 11 domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BVH8_BEUC1 Length = 325 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 77/248 (31%), Gaps = 31/248 (12%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF-RERLMYLDLE---YQSGYCRLR 67 A R+ +++ L S +LA VS RT+R D R R + +E ++G+ RL Sbjct: 5 AARMLDLLALLQMRPGWSGSELAQRLSVSTRTIRADIERLRRLDYPVEGVRGRAGHYRLG 64 Query: 68 TAG-SEMQMVPDVLI--------------------FAHRSGLAGLFPGLDRRLVNALLMC 106 ++ D + L + P RR V+AL Sbjct: 65 VGAKLPPLLLDDDEAVAVAIGLRAATGLSGVEESTARALAKLEQVMPHQVRRKVHALATA 124 Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQ 162 V +N A + AI + + P RL+ Q Sbjct: 125 TSQGPVNTDSNVADPVVDAGVLSSIAAAIRDLEWLRFSYRDDAADAPPRAVEPYRLVSWQ 184 Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220 + WYLVA A F +D + L F + D V + Sbjct: 185 RRWYLVARDTTSTAWATFRVDWMDLRMRTGRHFVPSPLSEAEYSDLVVRTVASTGWAVHT 244 Query: 221 SLLTFVPA 228 +L PA Sbjct: 245 RILVHAPA 252 >UniRef50_C0C4Y8 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4Y8_9CLOT Length = 309 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 64/219 (29%), Gaps = 18/219 (8%) Query: 7 RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCR 65 R D + RL I+ L+ ++ LA VSVRT+ RD + + Q G Sbjct: 8 RTDMKSSRLFQILYLLMERRDVTAGMLAERLEVSVRTIYRDLDALSAAGIPVYAQKGQGG 67 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-------RRLVNALLMCDESPCVIA---- 114 E +M +L + + LD L+ + V Sbjct: 68 GIRLMEEFKMDRSLLSGEQQEQILTALQSLDSVGAIEGSSLLTQMSGLFGKKAVGWLEVD 127 Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE 170 + F +AI R ++ + P +L WY+ Sbjct: 128 FGSWGAMKKEKEYFEICREAILHCRLLSFEYFNSSGGWCERTVEPLKLCFKGGNWYVSGY 187 Query: 171 H--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207 +F L I + ETF +PV Sbjct: 188 CRRRRGFRLFRLSRILKLCIEDETFTPKVYKEGERPEPV 226 >UniRef50_A1SPT5 Helix-turn-helix, type 11 domain protein n=2 Tax=Actinomycetales RepID=A1SPT5_NOCSJ Length = 327 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 30/247 (12%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCRL 66 + R+ ++S L +LA VS RTLRRD + D++ GY Sbjct: 11 SARMLRLLSLLQTHRYWPGAELAGRLEVSPRTLRRDIDRLRELGYDVDAVRGVAGGYQLR 70 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP------ 120 ++ D A L G L + + P Sbjct: 71 AGGQLPPLLLEDDEAVAIAVALRTAAAGAVAGLEETAIQALTKVIGLMPPRLRRRMDAVH 130 Query: 121 -----------SPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165 A L QA V+ R R+ P RL+ + W Sbjct: 131 SQTDGVPWGGGPALDAGVLTTLAQACRDDEPVSFSYVSRDSSPSERRVEPHRLVSLGRRW 190 Query: 166 YLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 YLVA F +D + + + F + P F++A ++ + Sbjct: 191 YLVAYDRDRQDWRSFRVDRVTAPRASGQRFLPRP--LPAPDAPSFVRAGIRAMPQRYEVR 248 Query: 224 TFVPADS 230 D+ Sbjct: 249 VRFAVDA 255 >UniRef50_A0QS56 DeoR-family protein transcriptional regulator n=7 Tax=Actinomycetales RepID=A0QS56_MYCS2 Length = 320 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 74/266 (27%), Gaps = 40/266 (15%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL-- 57 M + R+ ++ L + + +LA GV+ R++RRD + + Sbjct: 1 MARTVDTTG----RVVQLLGLLQSRRVWTGEELAERLGVTGRSVRRDIERLRELGYPVHA 56 Query: 58 -EYQSGYCRLRTAG-SEMQMVPDVLIFAH-----------RSGLAGLFPGLDRRLVNALL 104 + Q G +L ++ A +G+ +L + Sbjct: 57 SKGQGGGYQLGAGMALPPLLLDPDEAVAMAVCLRLAAGGSVAGVGESALRALSKLDQVMP 116 Query: 105 MCDESPCVIAPANPV-------PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERL 153 S V + L +A R V+ + RL Sbjct: 117 ARLRSQVAAIHDATVTLGPNATDTAVAPDVLMTLARACRDREHVSTGYTDLRGNQTQRRL 176 Query: 154 APCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 P +L+ + WYL+A LD + ++ TF + I A Sbjct: 177 EPYQLVTTGRRWYLMAYDRDREDWRSLRLDRMSDVRATGTTFTARPAPDAAAYVGRAISA 236 Query: 212 LPHFRFIQHSLLTFVPADS-----PP 232 + F P PP Sbjct: 237 --SAYPYVARVRYFAPEKVVAQRFPP 260 >UniRef50_D0RTY4 DeoR-family transcriptional regulator n=3 Tax=Streptococcus RepID=D0RTY4_9STRE Length = 308 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 70/200 (35%), Gaps = 22/200 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCR 65 RL I+ L+ + ++ +++A F +S RT+ RD L + + + G+ Sbjct: 2 KLERLIYILLALLNKKQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFYI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGL--------FPGLDRRLVNALLMCDESPCVIAPAN 117 + + + + F ++ +L + + + +P + Sbjct: 62 PDDYKMDSSFFTEEEKQFIINMSQNVGKIVGRPSFDSIEHKLTSQEVTDNVNPFYFDLTS 121 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEG 173 + + + QAI ++V+ + R + P RL+ WY++ Sbjct: 122 WSLNTNYL---LEIEQAIQTGKKVSFSYFSKKQERSLRTILPYRLIFKLNAWYVIGYCFE 178 Query: 174 H--IAVFTLDEIHLIQPLQE 191 +F L I + + E Sbjct: 179 KLDFRIFKLSRIRDLLIVDE 198 >UniRef50_C0ZJQ9 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJQ9_BREBN Length = 318 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 29/247 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDL---EYQSGYCRL 66 A RL I+ L ++ ++LA VS RT+ RD + + G L Sbjct: 2 RADRLLAILLLLQNHGRMTSKQLAERLEVSERTVHRDMEALSSSGVPVYALRGADGGWAL 61 Query: 67 RTAGSEMQMVPDVLIFAHRS-----------GLAGLFPGLDRRLVNALLMCDESPCVIAP 115 + GL + +L++AL + + Sbjct: 62 AEGYRSNLTGMKINELQSLLVASPAALLNDLGLHENYEAAFLKLLSALPKTVQQDAIHVR 121 Query: 116 AN-------PVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTW 165 S + A+ R++ + + P L+ + W Sbjct: 122 HLLHIDGAGWHESTETFPFLSTVQDAVWLSRKLFIRYMREDVAVERIVCPLGLVAKRSIW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFRFIQHS 221 YLVA+ + + + + + L + F R F +LP + Sbjct: 182 YLVAKVDEDMRTYRISRLLDAHLLDDGFVRPSEFDLASYWEQSTMDFKSSLPRYPARLLV 241 Query: 222 LLTFVPA 228 +PA Sbjct: 242 KKGTLPA 248 >UniRef50_A8FE45 Possible transcriptional regulator n=2 Tax=Bacillus pumilus RepID=A8FE45_BACP2 Length = 310 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 24/232 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCR 65 R+ + L++ + + + LA VS RT+ RD + + G Sbjct: 2 KIDRILSTVMLLISKKQVQAKDLAELHEVSTRTIYRDIDTINQAGIPVVTTQGAGGGISL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALL------------MCDESPCVI 113 + E ++ D I + L + + +L ++ V Sbjct: 62 VEDYRLEKKLFTDDDIEVILTALESMMSAYSFKESEHVLKKIKSLIPTQTGENEKQHHVF 121 Query: 114 APANPVPSPSGALSFWRLIQ-AITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLV 168 + S A +LI A + + + + + P L++ + WYL Sbjct: 122 IDLSSWGKDSQAEQKLQLIHTAASAHQYIQFTYRNAKGETLPRNVEPYTLVLKGRHWYLY 181 Query: 169 AEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218 A +F L + + + F+ Q P + Sbjct: 182 AFCCVKKAFRLFKLTRMTGLVAISGYFQPKRVKNEEKPWNDSWQEQPSVSPV 233 >UniRef50_C1CY87 Putative transcriptional regulator n=1 Tax=Deinococcus deserti VCD115 RepID=C1CY87_DEIDV Length = 318 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 28/218 (12%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG----YCRL 66 ++R+ ++ L A E+++ +LA VS RT++R + +E + G YC Sbjct: 5 SMRVLTVLELLQARESVTGAELARRLEVSPRTVQRYVTRLQDLGIPVEGRRGVGGAYCLK 64 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGL---------------FPGLDRRLVNALLMCDES-- 109 M D + GL L L R L L ++ Sbjct: 65 PGFRLPPLMFTDEEALSLALGLRALRHLGLHALAPAAEAAGAKLSRTLPAPLRDGVQALE 124 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165 V A+P + A L++A+ R V + R+L W Sbjct: 125 TAVQLDASPWVVSTDAALLATLLRAVRESRTVEFRYVAAQGVGTTRQANIYRVLHLDGRW 184 Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201 Y V G + F LD + + L F S Sbjct: 185 YAVGWCLLRGALRSFRLDRMEELCVLDTRFVAPASFDA 222 >UniRef50_C6D1B9 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1B9_PAESJ Length = 306 Score = 121 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 67/209 (32%), Gaps = 21/209 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL II L+ E +S +L+ ++GVS RT+ RD + + G Sbjct: 2 KLERLISIIYLLLNNEVVSASELSCKYGVSQRTIYRDIEAICAAGIPVVSYQGVNGGYGI 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLD------------RRLVNALLMCDESPCVIAPAN 117 E +M +L + + L RL ++P + Sbjct: 62 MKEYKMDKSLLSSDDIASIITLLKSTTTLFEDERVQETIHRLKTVQADNGKAPSLTMDLG 121 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEH-- 171 S L AI GRR V + + P LL+ WYL Sbjct: 122 SWR--SYTAHLRTLHSAINGRRLVRFHYMNAKDERQDRLVEPVSLLLKYNAWYLYGYCRS 179 Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 VF L + + L E + R ++ Sbjct: 180 RDDYRVFKLTRMSELLALTECYERKHNIH 208 >UniRef50_C6J3L6 Putative uncharacterized protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3L6_9BACL Length = 310 Score = 121 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 54/206 (26%), Gaps = 18/206 (8%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 RL II L+ + + L+ F VS RT+ RD + + SG Sbjct: 2 KIERLLGIIVLLIHRKRMKAEDLSRYFEVSERTIYRDIDSLHRAGIPIVSLSGQDGGYEL 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-VNALLMCDESPCVIAPANPVPSPSG---- 124 + L + +++ + ++ P PS Sbjct: 62 MDGFKWDKTYLTLDDLLSIQWALRSIEKATGFEDIHDLISKINLLIDTVPAQDPSIQLQI 121 Query: 125 ------ALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--E 172 + L ++I + + + P + + WY Sbjct: 122 SHSNNSSQPIQALYKSIQNCTVIKIRYVDHKGSETVRDMEPMGIFLKDYHWYTWGYCLLR 181 Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDS 198 + VF L I F R Sbjct: 182 KELRVFKLTRIIETSNTDRYFTRRAY 207 >UniRef50_Q65L70 Hypothetical DNA-binding protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65L70_BACLD Length = 315 Score = 121 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 31/232 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65 RL ++ + + +LA EFGVS RT+ RD E Y + GY Sbjct: 3 KTERLIELMMTIHTKRKFTAGELAVEFGVSYRTVLRDLDELSALGVPIYSETGANGGYYL 62 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLF-----------PGLDRRLVNALLMCDESPCVIA 114 L A L + ++ L + Sbjct: 63 LNEPVLPPLFFTQSEAAAMFFAYQSLQFFGSLPFDAETRMVLKKFYRHLPPETQERIDAM 122 Query: 115 PANPV----PSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWYL 167 V P A L+ A + +T++ +G + P L WY Sbjct: 123 KDRIVFWNPHRPKAAEHLETLLDAAVTQSVLTVVYDGTDECTERSIQPIGLYSWNGFWYC 182 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRF 217 A +F D I + + + R + P + + H Sbjct: 183 PAYCFKRQAFRLFRADRILRAE------KADSGQARQLPYPSVLSWIKHSES 228 >UniRef50_B4UYC1 Helix-turn-helix type 11 domain containing protein n=1 Tax=Streptomyces sp. Mg1 RepID=B4UYC1_9ACTO Length = 335 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 69/244 (28%), Gaps = 40/244 (16%) Query: 15 LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLE----YQSGYCRLRTA 69 + ++ L +G +V +LAA V RT+RR L + +E GY Sbjct: 1 MLTLLELLQSGGLRTVAELAARLEVDERTVRRYADHLLDLDVPVESVRGRHGGYRLAAGY 60 Query: 70 GSEMQMVPDVLIFAHRSG-----------------------LAGLFPGLDRRLVNALLMC 106 M+ D A G + + P R ++A+L Sbjct: 61 RMPPLMLSDDEALAVLLGLVAGQRAGLMSAAGTASETAAAKIRRVLPERLGRRLDAVL-- 118 Query: 107 DESPCVIAPANPVPSPS-GALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIH 161 + P + A+ R V++ L P L+ H Sbjct: 119 ---DSLAFTTPPRTPAVPETAVLLAIADAVRHHRPVSIRYTAADGRHSERTLHPYGLVAH 175 Query: 162 QQTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQ 219 WY+ G F LD I + L TF + P+ + Sbjct: 176 SGRWYVSGGDPAIGEERTFRLDRIADARTLPGTFDPPTGFAPAEHVLAGLATAPYRHEVT 235 Query: 220 HSLL 223 + Sbjct: 236 ARVQ 239 >UniRef50_C0Z5Y8 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5Y8_BREBN Length = 334 Score = 120 bits (300), Expect = 4e-26, Method: Composition-based stats. Identities = 32/252 (12%), Positives = 69/252 (27%), Gaps = 33/252 (13%) Query: 7 RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQS 61 R + RL I+ + + + ++LA SVR++ RD + + Sbjct: 14 RLEMRLHRLIAILLLIESRGKMKAKELAIALETSVRSIYRDIDALSQAGIPIAATSGPGG 73 Query: 62 GYCRLRTAGSEMQMV------------------PDVLIFAHRSGLAGLFPGLDRRLVNAL 103 G + ++ + D + ++ Sbjct: 74 GIYLMEGYTVNLKQLYVDDVVHLYLTGMGIHVGQDTETGHKLTSALLKLEKTLPQIYRPD 133 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLL 159 + + + L A+ +V + + P L+ Sbjct: 134 IEKAKKRFYFDETPWWEERVVIPNLEVLRAAVWRSSKVVIAYRKMDGSSSSRTVCPYGLV 193 Query: 160 IHQQTWYLVAEHEG--HIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALP 213 + + WYLVA E + F + I + +E F +S ++ F QA Sbjct: 194 VKKTEWYLVAYCENAQEVRTFKCERIPSVHVREEAFEIPESFSLAGYWTNQEAAFKQACR 253 Query: 214 HFRFIQHSLLTF 225 + + Sbjct: 254 EVEYFPVVIRLH 265 >UniRef50_D1ARJ4 Helix-turn-helix type 11 domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ARJ4_SEBTE Length = 309 Score = 120 bits (300), Expect = 4e-26, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 34/226 (15%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCR 65 RL II L+ + + +LA F VS RT+ RD + + G Sbjct: 2 KIERLLSIIVILLERKKVPAPRLAEIFEVSTRTIYRDIDTLNAAGIPVITYPGVNGGVGI 61 Query: 66 LRTAGSEMQMVP-------------------DVLIFAHRSGLAGLFPGLDRRLVNALLMC 106 L E + I L G+ P + + Sbjct: 62 LEEFKLEKNLFTSEDLSSLLTGLSSISSAFSSSEITNALIKLKGIIPEKRLKDIEKK--- 118 Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQ 162 + +I + + + + A+ + +T E R ++ P R+++ Sbjct: 119 -TNRIIIDLTPWKNTNNVSSDLKSIKSAMDKNKILTFKYEDRQRKKSTRKIEPYRIILKG 177 Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206 WY+ F L I ++ +++F + E+ Sbjct: 178 NDWYVEGFCILRNDFRYFKLSRISDLKITKKSFAPREIPEAEPENG 223 >UniRef50_A6WLL6 Helix-turn-helix type 11 domain protein n=16 Tax=Alteromonadales RepID=A6WLL6_SHEB8 Length = 237 Score = 119 bits (299), Expect = 6e-26, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 21/212 (9%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRL-- 66 R A RL I+ L + ++LA VS RT+ RD ++ L + +E ++G L Sbjct: 2 RRADRLFQIVQILKHKRLTTAQELAERLEVSTRTIYRDVQDLCLSGIPIEGEAGVGYLLR 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES------------PCVIA 114 M + + A + G+ + + L +A ++ Sbjct: 62 HEVNVPPLMFNEAELEAIQVGMRMVQTWGGKELGSAARQAMIKVEAVLPKRLQAYQSLMF 121 Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVAE 170 + + L + R V L + + P + + TW L+ Sbjct: 122 SPDFYLDSNEFQFLDPLRNSAQRREYVKLFYQDVKLDVTEREVRPLAIYFWRGTWTLLTW 181 Query: 171 HEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200 E F +D I + L F + Sbjct: 182 CELRSAFRNFRVDRITGLVRLNRHFEQAPGQE 213 >UniRef50_Q28UL6 Helix-turn-helix type 11 n=46 Tax=Alphaproteobacteria RepID=Q28UL6_JANSC Length = 237 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 62/213 (29%), Gaps = 25/213 (11%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRL 66 R A RL +I RL G+ + R LA VS RT+ RD + +E ++ GY Sbjct: 2 RRADRLFRLIDRLRPGKLTTARALADAMEVSERTIYRDIAHLQGSGVPIEGEAGLGYMMR 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFP-----------GLDRRLVNALLMCDESPCVIAP 115 M + I A G L ++ L + Sbjct: 62 DGYNLPPLMFTEEEIVALSVGARMLQTWGGTSMARGADSALDKITAVLPDATRTRAERLR 121 Query: 116 ANPVP----SPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167 + + AI R+++ L P L W L Sbjct: 122 FEAWTTNPLDAKTRATIDTVEAAIQAAERLSIDYRDDKGNPTERILRPLGLWFWGSVWTL 181 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198 VA +F LD I + L F + Sbjct: 182 VAWCELRDAYRMFRLDRILDARNLG-AFTPHPD 213 >UniRef50_O34920 Uncharacterized HTH-type transcriptional regulator yobV n=2 Tax=Bacillus subtilis group RepID=YOBV_BACSU Length = 313 Score = 119 bits (298), Expect = 7e-26, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 66/227 (29%), Gaps = 27/227 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 RL ++ L++ + + +LA F VSVRT+ RD + + G Sbjct: 2 KLERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIGI 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESP-------- 110 ++ + L +A + + L+ + Sbjct: 62 METYRLEREWLKEEELFAIASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTEK 121 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166 I + ++ AI ++ P L+ WY Sbjct: 122 WFIDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSASGETLLRETEPYTLVCKAGHWY 181 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRND-SLCRLVEDPVFIQ 210 L A F L+ + + L +TF R D L L D + Q Sbjct: 182 LYAYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQ 228 >UniRef50_D2Q2S8 Helix-turn-helix type 11 domain protein n=2 Tax=Actinomycetales RepID=D2Q2S8_9ACTO Length = 320 Score = 119 bits (298), Expect = 8e-26, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 73/217 (33%), Gaps = 30/217 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLE---YQSGYCRL 66 + R+ +++ L G S +L++ GVS RTLRRD Y ++ + G+ RL Sbjct: 1 MTERMLALLATLQTGRAFSGAELSSRLGVSARTLRRDIDRLRGYGYPVDTQPGRGGFYRL 60 Query: 67 RTAG-SEMQMVPDVLIFAHRSGLAGL------------------FPGLDRRLVNAL-LMC 106 ++ D A GLA L + +D+ L L Sbjct: 61 TAGRALPPLVLDDDEAVATLLGLATLAATGEAGEGRLDEAATRAYGKIDQLLPGRLRPRA 120 Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQ 162 + A+ + L AI RR + R+ P RL+ Sbjct: 121 AAIRSTLEAAHQLAPAPSPQLLADLADAIRARRTAVFEYQSPTGRPSSRRVEPHRLVHLN 180 Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197 WY VA + VF D I +Q + F Sbjct: 181 LRWYFVAWDVEKQDWRVFRCDRIEQLQIMTSQFEPRP 217 >UniRef50_D2B3I6 Helix-turn-helix, type 11 n=2 Tax=Actinomycetales RepID=D2B3I6_STRRD Length = 333 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 72/259 (27%), Gaps = 33/259 (12%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY 59 M R A+R I L ++ +LAA GV+ R RR + +E Sbjct: 1 MPTDLSPTAR-ALRAMEI---LRTRPGVTAGELAACLGVTERAARRYVGILREAGIPVES 56 Query: 60 Q----SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR----------RLVNALLM 105 GY R + + P +++ AL Sbjct: 57 ARGPYGGYRLGRGTKLPPVAFTEPEALGLVMAVLDGQPAAADVGDLVGAALGKVIRALPE 116 Query: 106 CDESPCVIAPANPVPSP------SGALSFWRLIQAITGRRRVTLIAE----GRRCERLAP 155 + +P L+ AI RRRV + + P Sbjct: 117 NVGRQAAALREHASAAPDRFAARPDPAITSALVAAIADRRRVVVSYRSESGNEWEAEVDP 176 Query: 156 CRLLIHQQTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 +++ WYL+ I + +D + +Q F D L + + Sbjct: 177 WAVVVRHGRWYLLCHSHRADAIRTYRVDRVRQVQRSTHAFEPPDGLDPVTALEENLGT-- 234 Query: 214 HFRFIQHSLLTFVPADSPP 232 + F + A+ P Sbjct: 235 GWEFATRVVFDAPLAEVAP 253 >UniRef50_A3CLM4 Putative uncharacterized protein n=2 Tax=Streptococcus RepID=A3CLM4_STRSV Length = 299 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 20/228 (8%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL----EYQSGYCR 65 R IIS LV + ++L+ F VS RT+ RD + L + L G Sbjct: 2 KIDRQMGIISHLVNQRKTTAKELSELFKVSTRTIMRDIDDLSLAGIPLYVMKGKNGGIFL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR-----RLVNALLMCDESPCVIAPANPVP 120 + ++ + + SGL + L+ ++ S I + Sbjct: 62 MEDFQTDKPPLTQSERLSIESGLKSRYQVLEDTSTFNAILKLNATNTYSDFEIDLSLSQG 121 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHIA 176 + ++L++AI GR ++ + P R++ ++WY+ A Sbjct: 122 NLEIRTLIFKLLEAIRGRVKIKFSYINSQGLVSQKNCEPYRIVYKDRSWYMDAYDTDKAR 181 Query: 177 --VFTLDEIHLIQPLQ----ETFRRNDSLCRLVEDPVFIQALPHFRFI 218 VF + I + F + + + H + I Sbjct: 182 FSVFKVARISELTLSDTFSKRHFTPLPYDGGTWMNENKVPVILHVQKI 229 >UniRef50_B5GB15 DeoR-family protein transcriptional regulator n=2 Tax=Actinomycetales RepID=B5GB15_9ACTO Length = 327 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 72/250 (28%), Gaps = 42/250 (16%) Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEY----QSGYCRLRTAGSE 72 ++ L G S +LAA GV+ RT+RRD + GY + Sbjct: 1 MLGLLQRGRNWSGPELAARLGVTARTVRRDVERLRALGYPVHALQGVGGGYRLGAGSELP 60 Query: 73 MQMVPDVLIF----------------------AHRSGLAGLFPGLDRRLVNALLMCDESP 110 ++ D + + + P R V+AL E Sbjct: 61 PLLLDDEEATATAASLLAGAGGGGPGAGEAALRALAKIDRVMPARLRHEVSALAGAVE-- 118 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWYL 167 P + L A R R+ P RL+ + WYL Sbjct: 119 ----FFEGGPERVEPATLVTLAGACRDEVEARFRYPSRGEVTERRVEPYRLVASDRRWYL 174 Query: 168 VAE--HEGHIAVFTLDEIHLIQPLQETFRRND---SLCRLVEDPVFIQALPHF-RFIQHS 221 +A F +D + + F V+ V A PH RF+ H+ Sbjct: 175 LAYDLDRDDWRTFRVDRMTEVAARTWRFTPRPAPEDAAAYVQRGVVTGAYPHSVRFLVHA 234 Query: 222 LLTFVPADSP 231 V A P Sbjct: 235 PAAEVRAQVP 244 >UniRef50_C9YTR3 Putative transcriptional regulator n=8 Tax=Streptomyces RepID=C9YTR3_STRSW Length = 333 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 76/247 (30%), Gaps = 39/247 (15%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL ++ L + +++ +LA E VS RT+ RD + +Y D GY Sbjct: 2 RAARLIKMVLLLQSRPSMTAAELARELEVSERTVTRDAQALSEAGVPVYADRGRAGGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMCDE------- 108 + + + + A GL ++ ALL Sbjct: 62 IGGYRTRLTGLARSEAEALFLSGVPGALREMGLEDAASAARLKVSAALLPSLRDASRTAA 121 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIHQQTW 165 + + P + A+ RR+ L P L++ W Sbjct: 122 QRFHLDAPSWFQEPKTPELLPAVADAVWDDRRIVARYRRGDVEVGRELEPYGLVLKAGVW 181 Query: 166 YLVAEH----------EGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQA 211 YL A +G + +D ++ + F R++ + F ++ Sbjct: 182 YLCARVPAAGDGTGEGDGPFRTYRIDRFLSVEDGGDRFARDEGFDLPGYWDEQTERFARS 241 Query: 212 LPHFRFI 218 + H + Sbjct: 242 ILHTEVL 248 >UniRef50_D1CH46 Helix-turn-helix type 11 domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CH46_THET1 Length = 320 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 31/220 (14%) Query: 26 ETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG---------YCRLRTAGSEMQM 75 ++ R+LA + VS RT+ RD + + + Q G L G + Sbjct: 17 GKVTARELAEKLEVSERTIHRDMEALGMAGVPIYAQRGAGGGWALLPGYELDVPGIGPEE 76 Query: 76 VPDVLI-----FAHRSGLAGLFPGLDRRLV-------NALLMCDESPCVIAPANPVPSPS 123 + +L+ GL +L L + P P Sbjct: 77 LEVLLLGHSPKLLSDLGLGSKLEAAYGKLALALQPQHRESLDRVRERLYVDPVGWRPREE 136 Query: 124 GALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179 L +A+ R L + P L++ +WYLV EG + + Sbjct: 137 AVDLLPTLYRAVWEERSARLRYRRADGQEVERWMQPLGLVVKGGSWYLVGAVEGEVRTYR 196 Query: 180 LDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHF 215 + + ++ L + F R F ++LP + Sbjct: 197 VSRMASVE-LGQHFDRPAGFDLARYWRDSQERFQESLPRY 235 >UniRef50_C0CXX2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXX2_9CLOT Length = 304 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 68/221 (30%), Gaps = 17/221 (7%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65 RL I L+ + S +LA +F VSVRT++RD + + + GY Sbjct: 2 KIDRLYGITVYLLNHKKASASELARKFEVSVRTVQRDIDALCQAGIPVAAESGAKGGYSI 61 Query: 66 LRTAGSEMQMVPDV---LIFAHRSGLAGLFPGLDRRLVNALLMCDESP--CVIAPANPVP 120 T + Q + LIF G + P + P I V Sbjct: 62 PDTFRMDSQAITQEDYGLIFTALKGFSSAMPSPNIASALEKFTALSKPDNERIILDFSVL 121 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGH 174 G +L AI + V R + P L+ WYL+A Sbjct: 122 REGGETLIKQLQTAIRRKCCVRFTYTNADNMTRVHTVEPVALVYRWYAWYLLAYSTVRED 181 Query: 175 IAVFTLDEIHLIQPLQETFRRNDS-LCRLVEDPVFIQALPH 214 + L + + F + ++ + L H Sbjct: 182 YRTYKLVRMEQAEITGLPFTMEHAPAETILREHDRHSPLAH 222 >UniRef50_D2B9H3 DeoR family transcriptional regulator n=3 Tax=Actinomycetales RepID=D2B9H3_STRRD Length = 360 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 54/202 (26%), Gaps = 27/202 (13%) Query: 23 VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCRLRTAGSEMQMVP 77 +LA GVS RTLRRD + + GY A ++ Sbjct: 16 QTHRHWPGMELADRLGVSERTLRRDVDRLRELGYPVSAARGTDGGYQLASGAVLPPLLLD 75 Query: 78 DVLIFAH-----------RSGLAGLFPGLDRRLVNALLMCDESPCVIAPA-----NPVPS 121 D A +G+ ++V L + A Sbjct: 76 DEEAVALAVGIGDAAQSGIAGMQEASLRALTKVVRVLPPRLRARVDALRAMTLSVAASGP 135 Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEH--EGHI 175 A + QA + R+ R + P R++ WYLVA Sbjct: 136 VVAAGVLTVVAQACRDQERLRFGYTARGAASTDREVEPYRVVALGGRWYLVAYDLTRHDW 195 Query: 176 AVFTLDEIHLIQPLQETFRRND 197 F LD + FR Sbjct: 196 RSFRLDRLIEPAATGTRFRPRP 217 >UniRef50_C8WKG8 Helix-turn-helix type 11 domain protein n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WKG8_EGGLE Length = 313 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 69/207 (33%), Gaps = 22/207 (10%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTAGS 71 RL I+ L+ T + +LA + VS RT+RRD + + G Sbjct: 4 QRLFEIVYLLMDRGTATTGELARKLEVSERTVRRDIDALSAAGVPVYMTRGKGGGVHLMD 63 Query: 72 EMQMVPDVLIFAHRSGLAGLFPGLDR-------------RLVNALLMCDESPCVIAPANP 118 + VL + + L+R RL + + + + Sbjct: 64 GYVLDRSVLSEREQDDIMAALSALNRTGASDDASDETAVRLGRLFQRENVNWLDMDFSFW 123 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174 P+ +F + A GR ++ R + P +L+ + +WYL A Sbjct: 124 GAPPNYRAAFDTIRDAAIGRHPLSFAYFDAEGNRTERTVEPAQLMFKESSWYLRAWCRER 183 Query: 175 --IAVFTLDEI--HLIQPLQETFRRND 197 +F L I + L ETF + Sbjct: 184 DAWRMFKLFRIDWETLDVLPETFEARE 210 >UniRef50_C7PP77 Helix-turn-helix type 11 domain protein n=3 Tax=Sphingobacteriales RepID=C7PP77_CHIPD Length = 235 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 81/239 (33%), Gaps = 37/239 (15%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY 59 M ++ + RL+ I+ RL+ + ++ +LAA+F VSVRT+ RD R + + Sbjct: 1 MPPSDM---KRLTRLTAILIRLLTKKIVTASELAAKFDVSVRTIYRDIRTLEQAGVPVVT 57 Query: 60 QS--GYCRLRTAGSEMQMVPDVLI------------------FAHRSGLAGLFPGLDRRL 99 + GY + M + A SG L R Sbjct: 58 EEGVGYTLMDGYRIPPVMFTESEANALITAEEIVSGNKDASFVAAFSGATAKIKALLRET 117 Query: 100 VNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAP 155 + + + ++ A S +L ++T + V + + P Sbjct: 118 MKEKVNLLQDRTIVKQAAYKEHSS--SCLSQLQISMTNAQLVKIKYMDEHAVATDRIIEP 175 Query: 156 CRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 W ++A VF LD I L++PLQE F + + F Q Sbjct: 176 FAFYGTGDNWLIIAYCRLRKDFRVFRLDRIVLLEPLQEKFTP-----QKMTLSEFFQQH 229 >UniRef50_C0ZIU8 Putative uncharacterized protein n=2 Tax=Bacillales RepID=C0ZIU8_BREBN Length = 321 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 27/219 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLE---YQSGYCRL 66 A + I+ L G+ ++ ++LA +++RT+ R + + +G L Sbjct: 3 KADNMLSILWLLKTGKRMTAKQLAEILEINIRTVYRYIDSLCASGVPIISDAGHNGGYSL 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES-------------PCVI 113 +E + D+ A L Sbjct: 63 LQQFNEAPLFFDLNEQKALIHAAAFAQEAGYPFGADLHRAISKLKRYTNEEQRDAIDRHS 122 Query: 114 APANPVPSPSGALSFWRLIQ---AITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTW 165 + P L + ++ +++ + R+ + P L+ + W Sbjct: 123 IGFEVIQPPVDPSLESTLQELELSVANGYTLSIEYQKAYQTTRQMRHIDPYGLVYWKGNW 182 Query: 166 YLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRL 202 Y+VA I F D +H IQ + +F+R Sbjct: 183 YIVAYCHLRSTIRSFRADRVHEIQRTEGSFQRPPEFSAR 221 >UniRef50_B5JRI7 HTH domain family n=3 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JRI7_9BACT Length = 320 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 71/221 (32%), Gaps = 29/221 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRLR 67 RL + L + + +A F +S+RT+ RD + + + ++ GY ++ Sbjct: 3 RIDRLMGTLLLLQSKRVIRAEDIAGHFEISLRTVYRDVAALSEIGIPVVAEAGVGYSLMK 62 Query: 68 TAGSEMQMVPDVLI-------------------FAHRSGLAGLFPGLDRRLVNALLMCDE 108 M + + S L + L + ++ L +E Sbjct: 63 GYLLPPIMFSEEEACALGMAAMALSKTSDPSLDASMESALLKVKAALPEKQLDRLARVEE 122 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQ 163 S G + F + + ++ + + + + P L+ + + Sbjct: 123 SVVFGWNNYGPKPMDGVVRFVDIQSCLAEQKALRISYKTGGRGEVTSREVEPLGLVHYLE 182 Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRL 202 W+L+A G F D I ++ L E R+ Sbjct: 183 YWHLIAWCRLRGDYRDFRFDRIQKLEVLDERVTRHGDFDLQ 223 >UniRef50_C7Q8N4 Helix-turn-helix type 11 domain protein n=12 Tax=Bacteria RepID=C7Q8N4_CATAD Length = 328 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 33/237 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-----LMYLDLEYQSGYCR 65 A RL ++ L ++ +LA E VSVRT+ RD +Y D GY Sbjct: 2 RASRLVSLLLLLQTRGRMTAHQLAEELEVSVRTIYRDVESLHEAGIPLYGDAGPAGGYQL 61 Query: 66 LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMC-------DE 108 L + + + A GL + ++ AL + Sbjct: 62 LAGYRTRLTGLSANEAEAMFLAALPGPAAELGLGSVMAAAQLKVKAALPPELADRSGRIQ 121 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQ 163 ++ + + +A+ +RR+ ++ LAP +++ Sbjct: 122 ERFLLDAPGWYDDGDTSPFLPAVAEAVWNQRRIRVLYRRWTEPTEVERTLAPYGIVLKTG 181 Query: 164 TWYLVAEHEGHIAVFTLDEIHLIQPLQE---TFRRNDSLCRLVEDPVFIQALPHFRF 217 WY VAE G + +++I + L++ F R + + + + FR Sbjct: 182 KWYTVAESAGRTNTYRVNQILELTALEDDDSCFERPEDFDL---TAYWARQVAEFRT 235 >UniRef50_D2Q3M3 Helix-turn-helix type 11 domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q3M3_9ACTO Length = 323 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 27/198 (13%) Query: 30 VRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRTAGSEMQMVPDVLIFAH 84 R+LA E VS+RT+ RD Y D GY + +++ + + A Sbjct: 21 ARELAEELEVSLRTIYRDVEALAAAGVPVYADQGRAGGYRLVDGYRTKLTGLTEQEAAAL 80 Query: 85 RS----------GLAGLFPGLDRRLVNALLMCDE-------SPCVIAPANPVPSPSGALS 127 GL ++ +L+ AL + + + Sbjct: 81 FLVGMPGPAAALGLTAETSAVELKLLAALAPDQRDRAGRLKNRFHLDMPAWYREAEDSPY 140 Query: 128 FWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDE 182 ++ +A+ RR+T++ L P L++ +WY+VA G + + + Sbjct: 141 LAQVAEAVLQDRRITVLYRRWEEPREVERTLDPYGLVLKHGSWYVVAAASGGVRTYRVSN 200 Query: 183 IHLIQPLQETFRRNDSLC 200 I + F R Sbjct: 201 ILALTMTGTVFTRPADFD 218 >UniRef50_C2G2T1 Helix-turn-helix, type 11 domain protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2G2T1_9SPHI Length = 331 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 77/231 (33%), Gaps = 29/231 (12%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS-- 61 + R I+ +L + + ++LA F VS+RT+ RD R + + ++ Sbjct: 2 NDDSPKKFDRTVAILIQLQSKRVVRAQELADRFNVSLRTIYRDIRTLEASGVPIFGEAGT 61 Query: 62 GYCRLRTAGSEMQMVPDVLI-----------FAHRSGLAGLFP-------GLDRRLVNAL 103 GY + M G+ F + + + L Sbjct: 62 GYSLMEGYRLPPIMFTREEATSFVAAEKLMQQYVDQGIQEHFSSAIIKIKAVLKSMEKDL 121 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRL 158 L ES +I + + + L ++I+ +++V + + + P + Sbjct: 122 LSSLESQVLIQSNSKNLNKLVPNALSVLFESISRKKKVRMHYQTIESEHPETRVIEPVGI 181 Query: 159 LIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFR-RNDSLCRLVEDP 206 + WY++A F D I + L++ F + S+ + Sbjct: 182 FHENKFWYMIAYCYLRKAYRQFRTDRIQRLDVLEDAFDMEHPSISEFLHKR 232 >UniRef50_A9B2R1 Helix-turn-helix type 11 domain protein n=2 Tax=Bacteria RepID=A9B2R1_HERA2 Length = 322 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 20/222 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 RL II L+ E +S + A F VS RT+ RD L + + G Sbjct: 21 KVERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDALSLANIPIYAVHGVNGGYGI 80 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP-------------CVIAPA 116 E ++ +L + + GL++ + + ++ Sbjct: 81 MQEYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIKKIEAMVGQLALNRAIYLSFY 140 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE-- 170 + ++I +R V + + P L + TWYL Sbjct: 141 AWEGRSELLETLKTCQESILKKRLVLFDYTDKDGTITQRMIEPYELHFSESTWYLKGFCL 200 Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 F L I + F D+ + ++ L Sbjct: 201 DRQAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLPQL 242 >UniRef50_UPI00017450F0 Helix-turn-helix, type 11 domain protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017450F0 Length = 309 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 34/214 (15%) Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRLRTAGSEMQ 74 +I L + ++ ++A F +SVRT+ RD + + ++ GY +R Sbjct: 1 MILLLQSHRVITAERVADHFEISVRTVYRDLAALGEAGVPIVAEAGVGYSLMRGYHMPPV 60 Query: 75 MVPDVLIF----------------------AHRSGLAGLFPGLDRRLVNALLMCDESPCV 112 M + + + + P +N L Sbjct: 61 MFTEDEAAALFVSGEVTEQVADDSLRMALRSALLKVRSVLPRERHDFLNRLQPAVG--VW 118 Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTWYL 167 ++ + L QA+ +R L ++ P L+ + + W+L Sbjct: 119 LSLHDGEDETGRPDCLMPLQQAVVRKRCAVLHYNAGARGEVTTRQVEPLGLMYYARHWHL 178 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSL 199 +A F LD I + ++F ++ Sbjct: 179 IAYCRMRQDFRDFRLDRISRWEVTTDSFEGHEGF 212 >UniRef50_C6CS13 Helix-turn-helix type 11 domain protein n=3 Tax=Bacillales RepID=C6CS13_PAESJ Length = 315 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 59/223 (26%), Gaps = 33/223 (14%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY--QSGYCRLR 67 R I+ L + + LA+ + SVRT+ RD + M + + GY + Sbjct: 3 KTDRQLAIMLELQRSKVIRAEDLASLYETSVRTIYRDIQALSEMGVPIFGAPGHGYSLME 62 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALS 127 A G + LD I P + Sbjct: 63 GYFLPPIGFSAEEAVALLMGADFIEQRLDGDYARVAKAAKSKIEAILPETVREESTRVRE 122 Query: 128 FWRL-------------------IQAITGRRRVTLIAEGRR---------CERLAPCRLL 159 RL +AI RR+++ + + +AP L Sbjct: 123 TMRLLNAGEPRTGLREKDILGQVRRAILERRKISFSYKKKTPEADGNRNSTREVAPYGLA 182 Query: 160 IHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 Q W L+ I F L + + L F Sbjct: 183 FAQGNWMLIGHCGLRQDIRHFRLSRMTELAVLDTPFAMPHGFN 225 >UniRef50_D1AKN4 Helix-turn-helix type 11 domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKN4_SEBTE Length = 322 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 23/233 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY----QSGYCR 65 R+ I+ L + +S ++LA EF VS RT+ RD M + +E + G Sbjct: 2 KTDRILNILYYLNRYKKVSAKRLAEEFEVSQRTIYRDLDILENMGIPIERKMGFEGGISI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLV-----------NALLMCDESPCVIA 114 + E + S L + + + + + Sbjct: 62 IENFKLENINFSKSELTRIISILNNYYYKDSKTKLLIEKFKNIISDKEMEEQRKLDYFKI 121 Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE 170 + + + +AI + + + +L P + I + YL A Sbjct: 122 EEGYLMHKREKENISSIKKAIESKNIIEVKYINSDNVISERQLEPYIISIKGNSVYLFAN 181 Query: 171 H--EGHIAVFTLDEIHLIQPLQETFRRNDSL-CRLVEDPVFIQALPHFRFIQH 220 + +F + I I+ E F + + ++ F H I Sbjct: 182 CLLRKELRIFRVSRILEIKITNEKFTEDPDISEKIYSQKGFFSDYIHNEIILK 234 >UniRef50_B4X1Q6 HTH domain family n=1 Tax=Alcanivorax sp. DG881 RepID=B4X1Q6_9GAMM Length = 238 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 69/205 (33%), Gaps = 21/205 (10%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQ--SGYCRL 66 R A RL I+ + A + + + LA VS RT+ RD + L Q GY L Sbjct: 2 RRAERLFQIVQVIGASQWTTAQALAERLQVSERTIYRDVDHLSASGVPLYSQAGKGYALL 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGL------AGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120 M A +GL AG R V L + A A+PV Sbjct: 62 EGYQLPPLMFSVEEWQALLTGLSMAQGWAGQRQAEALRAVQEKLAMAVPSHLRALASPVS 121 Query: 121 SPSGALSFWR------LIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE 170 +P+ L +AI R +V + + P L W LV Sbjct: 122 APALPERRMLGALLDPLQRAIRERSKVRVHYRDVQEQFSKRIIWPLGLYFWGHCWTLVGW 181 Query: 171 H--EGHIAVFTLDEIHLIQPLQETF 193 F +D I ++Q L + + Sbjct: 182 CELRKAFRHFRVDRIVILQTLGDRY 206 >UniRef50_B9MAM8 Helix-turn-helix type 11 domain protein n=4 Tax=Comamonadaceae RepID=B9MAM8_DIAST Length = 242 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 63/212 (29%), Gaps = 23/212 (10%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRL 66 R A RL I+ + + LA VS+RT+ RD + + +E ++ GY Sbjct: 2 RRADRLFQIVQLIRGRRLSTAAFLAGRLEVSLRTIYRDVADLQHQGIPIEGEAGVGYRLG 61 Query: 67 RTAGSEMQMVPDVLIFAHRS-----------GLAGLFPGLDRRLVNALLMCDESPCVIAP 115 M A + G+A G ++++ L + Sbjct: 62 AGFELPPLMFSQGEANALVAAARLAQTWVDGGMAREIEGALGKILSVLPPAARAAAEAQA 121 Query: 116 AN---PVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168 + L +A+ V L R+ P + W L Sbjct: 122 LYAPGSGLDTRAQAALQALREAVQSCHVVRLDYADVQGRPSLRRVRPLGCFYWGKVWTLS 181 Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198 A F +D I + L E FR+ Sbjct: 182 AWCELRDDFRGFRIDRIAAFEVLDERFRQEPG 213 >UniRef50_UPI0001788164 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788164 Length = 313 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 25/221 (11%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYC 64 + + RL ++ + A ++ +VR+LA EFG+SVRT+ RD E +Y GY Sbjct: 2 QKSQRLIQLMMMINAKKSFTVRELADEFGLSVRTISRDLDELSGLGVPIYSVQGRGGGYR 61 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLF-----------PGLDRRLVNALLMCDESPCVI 113 L+ + A L + + L + Sbjct: 62 LLQERMLPPISFTESEAIAVFFACQSLSYFSTLPFGEGAATALHKFYHYLPADIKEQIER 121 Query: 114 APANPVPS----PSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWY 166 + P A L+QA+ R+ VT+ G + P L WY Sbjct: 122 LKDRVMIHSPFRPMSADILQTLMQAVMVRQAVTISYRSSAGSSQRHIQPIGLYASSGYWY 181 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 A + I F +D + P + R D + ++D Sbjct: 182 CPAYCFTQEDIRQFRVDRMTAASPNESLSIREDIASQTLQD 222 >UniRef50_A8MKC4 Helix-turn-helix type 11 domain protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKC4_ALKOO Length = 323 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 66/234 (28%), Gaps = 30/234 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65 RL II + + T+ + LA S RT+ RD + + GY Sbjct: 2 RLHRLLGIIMLIDSRGTMKAKDLARILETSERTIYRDIDLLCESGIPIFSVSGPNGGYAF 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD------------------ 107 + ++ G+ P D + L Sbjct: 62 MEDYRINANVLESGDAVNLLLSSMGIRPEEDTEMAQQLRNAIIKLENSISVEHKEEIIKA 121 Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQ 163 + I + + +++ +++ + + P ++ Sbjct: 122 KERFFIDSDPWWGKRIPNKNVDLIKKSVLDLKKLKVYYRKYAGEISERIIRPYGAIVKNS 181 Query: 164 TWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSL-CRLVEDPVFIQALPH 214 WYL A E I VF I I+ L E+F +D+ Q + H Sbjct: 182 EWYLAAYCETKNDIRVFKCSRIESIEVLDESFLMDDNFSLEQFWKDSKQQFIKH 235 >UniRef50_A4SMQ7 Transriptional regulator, DeoR family n=3 Tax=Gammaproteobacteria RepID=A4SMQ7_AERS4 Length = 238 Score = 117 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 25/203 (12%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRL 66 R + RL + + L A + L+ R+LA VS RT+ R + L + + ++ GY Sbjct: 4 RKSDRLFQLTNLLRAHQPLTARELAERLCVSERTIYRYMDDLSLAGIPVYGEAGLGYRLS 63 Query: 67 RTAGSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRLVNALLMCDESPC 111 + + + A +G+ L ++ L ++P Sbjct: 64 EGFELAPLQLSNAELEALITGVNLVAVLTGKGLADPARALLAKIEAALPERGPGRGQTPV 123 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167 V P P + +L AIT + + + + R+ P L W L Sbjct: 124 VRVPDYRTARPEYVR-WDKLHDAITAGHWLEIDYDDALARQTRRRIYPLGLFYWGGCWTL 182 Query: 168 VAEH--EGHIAVFTLDEIHLIQP 188 A F +D I ++ Sbjct: 183 GAWCALRLAYRDFRVDRIGSLEL 205 >UniRef50_C2C3S2 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C3S2_LISGR Length = 313 Score = 117 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 19/203 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 + RL ++ L++ + LS ++LA + VSVR++ R +Y G Sbjct: 16 KSNRLFKMVYLLMSNDKLSAKELADKLEVSVRSVYRYMENLSEAGIPIYASQGRNGGISL 75 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGL--FPGLDRRLVNALLMCDESPCVIA----PANPV 119 L +V + + L D+ ++ L + + P+ Sbjct: 76 LPQFRMNSALVSEKEQNDILASLQSFASIEQSDQDTLDKLSAVFQKKPISWIEIDPSTWS 135 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEH--EG 173 S + + QAI + +T + + P +++ + WYL Sbjct: 136 NSREQKSTLAIIKQAIFQSQMLTFDYLNSKNEQLAREVYPYQVVFKDRAWYLKGYSIERE 195 Query: 174 HIAVFTLDEIHLIQPLQETFRRN 196 +F L +H + +TF Sbjct: 196 DWRLFKLTRMHNVTI--DTFTSP 216 >UniRef50_A3I1Q3 Putative deoR-family transcriptional regulator n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1Q3_9SPHI Length = 319 Score = 117 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 31/225 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ--SGYCRLR 67 RL+ I++ L + T+ +LA FGVS+RT+ RD R + + + GY + Sbjct: 3 RIDRLTAILTHLQSKRTIRAIELANRFGVSLRTIYRDVRALEETGVPIIGEAGQGYSLVE 62 Query: 68 TAGSEMQMVPDVLIFAHRSG---LAGLFPGLDRRLVNALL----------------MCDE 108 M A L R L D+ Sbjct: 63 GYRLPPVMFTKQEALAFIVAEKLLEKSMDEESNRFFKEALYKVKAILKSEEKDLLGRVDD 122 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQ 163 V N + +F +++AI+ RR + + L P + Sbjct: 123 KIQVFKRENHQSQFKRSKNFQLVLEAISERRVLQGHYTTFEPKKTTERILEPIGIYYSYS 182 Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQETFR--RNDSLCRLVE 204 WYL+A F +D I L +F ++ ++ Sbjct: 183 NWYLIAYCRLRKDYRTFRIDRFDKIHVLDGSFVLGKHPKFQEFLD 227 >UniRef50_Q163T5 Transcriptional regulator, putative n=15 Tax=Rhodobacterales RepID=Q163T5_ROSDO Length = 221 Score = 116 bits (291), Expect = 5e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 71/212 (33%), Gaps = 23/212 (10%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS--GYCRL 66 R RL II L G+ + +AA+ VS RT+ RD + + ++ + GY Sbjct: 2 RRTDRLFDIIQILRDGKLHRAQDMAAQLEVSTRTIYRDMDTLVASGVPVQGERGVGYMIT 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA- 125 + + A G+A + D L A L ++P+ + Sbjct: 62 EAITLPPLTLSVAEMEALNLGIAIVGEAADPDLKAAALSLGAKIDAVSPSRVIAQADEWK 121 Query: 126 -------------LSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLV 168 L AI R++V L + R C + P + + W L Sbjct: 122 FAVYPFADATRAFAHMPTLRAAIKARQKVELNYQSKRNERTCRIVRPLHMEYWGRIWTLT 181 Query: 169 AEHE--GHIAVFTLDEIHLIQPLQETFRRNDS 198 A E VF +D I Q L E F Sbjct: 182 AWCELKQAFRVFRVDLIETAQALPELFVDEPG 213 >UniRef50_A9DPV5 Transcriptional regulator, DeoR family protein n=2 Tax=Flavobacteriales RepID=A9DPV5_9FLAO Length = 258 Score = 116 bits (291), Expect = 5e-25, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 72/227 (31%), Gaps = 31/227 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY--QSGYCRLRTAG 70 RL I++ L + L+ +LA ++ VSVRT+ RD R+ + + GY + Sbjct: 30 RLISILTLLRSKRLLTATELAEKYNVSVRTIYRDIRKLEEAGVPVYTIEGRGYSLIENYT 89 Query: 71 SEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP--------------- 115 + A + + D VN + Sbjct: 90 IAPVQFTEKQANALITAEHIINQSKDASFVNDFKEALIKIKSVFKTSVQEKSEILSDKIH 149 Query: 116 -ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-----ERLAPCRLLIHQQTWYLVA 169 N + + + + AIT V + + ++ PC + W L+A Sbjct: 150 VFNWKLEETASNALSEIQIAITNFNCVEIHYKKANDYQISIRKIEPCAMYSTDNKWILIA 209 Query: 170 EHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214 + F +D I + L+E F R + + P+ Sbjct: 210 WCHLRNELRAFRVDRIQSFKILEEKFE-----DRKFNISDYFRKHPY 251 >UniRef50_UPI0001B58C22 helix-turn-helix type 11 domain-containing protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B58C22 Length = 322 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 25/214 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 A RL ++ L +V +LA E GV+ RTLRRD + L + G Sbjct: 2 RAERLVALLFTLHRKRAGTVGELAGELGVTERTLRRDLAALREAGVPLWSEPGRHGGIRL 61 Query: 70 GSEMQMVPDVLIFAHR--------------SGLAGLFPGLDRRLVNALLMCDESPC---- 111 + D L GL ++ ++ + Sbjct: 62 VDGWRSRLDGLTSREAVALLALDVPDALAGLGLGTAVAAAHAKVSASMPAQLQEQARTVA 121 Query: 112 ---VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTW 165 + + SP A + + +A+ ++R+ + R L P L++ W Sbjct: 122 GRFHLDASAWFTSPDDAAALPAVAKAVWTQQRLDVRYRRRDKVTRRTLDPLGLVLKAGVW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199 YLVA + + + + + + ETF R + Sbjct: 182 YLVARVDADLRTYRVSRLEGVAETGETFARPEEF 215 >UniRef50_Q2SQG3 Predicted transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q2SQG3_HAHCH Length = 244 Score = 116 bits (290), Expect = 6e-25, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 24/213 (11%) Query: 10 RLAVRLSLIISRLV-AGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS--GYCR 65 R A RL I++ L + + +A + VS RT+ RD + ++ + +E ++ GY Sbjct: 2 RRADRLFQIVTILRSRRGATTAKIIAEQLEVSERTIYRDIQALMVSGVPIESEAGVGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR-----------RLVNALLMCDES---PC 111 +R + + A G+ + DR +++ L + Sbjct: 62 MRGFTLPPLNFQEDELEALLLGMRMVQAWSDRAMGRAATHALQKILAELPSHLKRMGEQT 121 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167 I A L AI + + + + L P + +TW L Sbjct: 122 QIYSPQFFVDAKAAQFGEELRAAIRQKTLIWVRYKRVDGVESERWLEPLGMFFWGRTWTL 181 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198 VA F LD + ++ QETF Sbjct: 182 VAWCRLRKEYREFRLDRLLELRAAQETFETQKD 214 >UniRef50_D2BDR8 Helix-turn-helix type 11 domain protein n=9 Tax=Actinobacteria (class) RepID=D2BDR8_STRRD Length = 327 Score = 116 bits (290), Expect = 7e-25, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 27/244 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL ++ L ++ +L+ E VSVRT+ RD +Y D GY Sbjct: 2 RASRLLSLLLLLQTRGRMTATELSEELEVSVRTVYRDVEALSSAGVPVYADRGPAGGYRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMC-------DE 108 L + + + + GL + + +L+ AL Sbjct: 62 LDGYRTRLNGLTAEEASSLFLAGLPGPAAELGLGEVAANAELKLLAALPPEPRFHASRMR 121 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLA----PCRLLIHQQT 164 + A + +A+ +R + + + P L++ + Sbjct: 122 ERFHLDVPGWYRGADEAPFLGEVSEAVWDQRPLRMTYRRWGPRDVERLAHPYGLVLKGGS 181 Query: 165 WYLVAEH-EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 WY+VA G + + I + + F R + + +L+ Sbjct: 182 WYMVAAVGGGEPRTYRVSRIIAAEIAEGRFERPGDFELAAYWERYAADFRARMYTAEALV 241 Query: 224 TFVP 227 P Sbjct: 242 RVAP 245 >UniRef50_A8LGU9 Helix-turn-helix type 11 domain protein n=5 Tax=Bacteria RepID=A8LGU9_FRASN Length = 330 Score = 116 bits (290), Expect = 7e-25, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 71/239 (29%), Gaps = 33/239 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69 + RL ++ L A + +LAA+F VSVRT+RRD + L + G Sbjct: 2 RSSRLMALLLHLQAHGRATAGELAAQFEVSVRTVRRDVAALAEAGVPLWSEPGPHGGIRL 61 Query: 70 GSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRLVNALLMCDESPC--- 111 + D L S L + +++ L + Sbjct: 62 VEGWRTNLDGLTGDEASALLIAGAGGDVLGGLGLETVAAAAQTKILATLPPELRARAGRV 121 Query: 112 ----VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQT 164 + S + A+ +R+T+ L P L++ Sbjct: 122 RERFHLDAPGWFGSEEPVPHLAVVAGAVWSGQRITVCYGRPDRTVERSLEPLGLVLKAGV 181 Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPL---QETFRRNDSLC----RLVEDPVFIQALPHFR 216 WYLVA + + + I + F R + F ++L + Sbjct: 182 WYLVARGGSAVRSYRIGRIVEAAVRSGPEGRFTRPADFHLARWWASSNEDFARSLLRWP 240 >UniRef50_D1C7G1 Helix-turn-helix type 11 domain protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7G1_SPHTD Length = 323 Score = 116 bits (289), Expect = 9e-25, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 67/237 (28%), Gaps = 30/237 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL---EYQSGYCRL 66 A RL I+ L ++ R+LA VS RT++RD + + + G L Sbjct: 2 RADRLLSILLLLQVHWRMTARELAERLEVSPRTIQRDMEALSMAGVPVYAERGARGGWVL 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------------VNALLMCDES 109 L P D + Sbjct: 62 PDDYRTDLSGLTGLEIEALFLTKPARPLADLGYREAAEGALLKLLAALPTMRRREAERAR 121 Query: 110 PCVIAPANPVPSPSGALSFW-RLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164 ++ + L A+ RR ++ + P L+ Sbjct: 122 QRLLVDTSGWRQGEDPAPCLPALQDAVWRDRRARIVYRRNDGTTVERVVDPLGLVAKGSL 181 Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFRF 217 WYLVA +G+ + + + ++ E +R + F++ LP + F Sbjct: 182 WYLVAAVDGNPRTYRVARVQDVEVTDEPCQRPEGFDLAAYWAESTARFVRELPRYPF 238 >UniRef50_A7HP98 Helix-turn-helix type 11 domain protein n=3 Tax=Proteobacteria RepID=A7HP98_PARL1 Length = 240 Score = 116 bits (289), Expect = 9e-25, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 26/211 (12%) Query: 10 RLAVRLSLIISRLVAGETL-SVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQS--GYCR 65 R A RL II L + + + ++LA + VSVRT+ RD + + +E ++ GY Sbjct: 2 RRADRLFDIIEFLRRNKRVVTAQELAEKLEVSVRTIYRDVADLQASRVPIEGEAGLGYVL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL----------VNALLMCDESP----- 110 M + I A G + D + A+L Sbjct: 62 RSGYELPPLMFTEDEIEALVFGARMVRAWGDAAFTHAADAAVAKIRAVLPERLERIAAAT 121 Query: 111 -CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTW 165 +AP + + +AI RR++++ E + L P L W Sbjct: 122 HVTVAPGRTNQKDGYSRHLSPVRRAIRERRKLSIDYEALSGEKSRRVLRPLGLAFFGPFW 181 Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFR 194 L A F ++ I ++ + FR Sbjct: 182 ILAAWCEKREDFRTFRIERIGALKVTDDIFR 212 >UniRef50_C3JIV6 DeoR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JIV6_RHOER Length = 321 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 55/212 (25%), Gaps = 28/212 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRLRTAG-- 70 R ++S L +LAA V+ RT+RRD ++ SG Sbjct: 8 RALQLLSLLQTHRFWHCAELAARLDVTQRTVRRDIDRLRDLGYPVDSTSGKYGGYRLATG 67 Query: 71 --SEMQMVPDVLIFAHRSGLAGLFPG----------LDRRLVNALLMCDESPCVIAPANP 118 ++ D A GL + LL V A + Sbjct: 68 AHVPPLILDDDESVAVAVGLRYAAEAAIGGIEETSLRALTKIETLLPHRLRRRVSALHSS 127 Query: 119 V-------PSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167 V + L A V + P RL+ + WYL Sbjct: 128 VSSIRRADDDIVDPEALSVLAAACRDHEHVRFDYRRGDGESSRRLVEPHRLVTAGRRWYL 187 Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRND 197 VA F LD + F + Sbjct: 188 VAWDHHRSDWRTFRLDRLSEPWLAGSHFTPRE 219 >UniRef50_Q81CS6 Transcriptional regulator, DeoR family n=51 Tax=Firmicutes RepID=Q81CS6_BACCR Length = 320 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 30/225 (13%) Query: 15 LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLE---YQSGYCRLRTAG 70 + I+ L +GE ++ ++++ + +++RT+ R + + +G L Sbjct: 7 MLAILWMLRSGEKITAKQISEKLEMNIRTVYRYIDTISTSGVPIISEPGHNGGYTLLNNF 66 Query: 71 SEMQMVPDVLIFAHR---------------SGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 E + D L L + Sbjct: 67 IEAPLFFDFEEQTSLFHAAVFAEEAGYYGGEALNRAISKLSKYSNQEQETKINQHLTSLE 126 Query: 116 ANPVPSPSGALSFWR-LIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVA 169 SP +F + L QA+ V ++ + P R++ WY++ Sbjct: 127 VISRLSPLSIETFLKELEQAVADGYSVKILYHKNGEKKLNYRLVDPYRIIYWNNKWYVIG 186 Query: 170 EHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 I F +D I + + F R ++ FI++L Sbjct: 187 FCHLRNDIRSFRVDRIESLMLTENKFNRPENFSAR---DFFIKSL 228 >UniRef50_UPI0001788CE6 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788CE6 Length = 297 Score = 115 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 23/204 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 RL I L+ + ++ LAA + VSVRT+ RD + + G Sbjct: 2 KLDRLLGITMELLTKKRVTATALAARYEVSVRTIYRDVDLINQAGIPIASYPGADGGFEL 61 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLD--------------RRLVNALLMCDESPCVIAP 115 S + + L G++ L ALL +I Sbjct: 62 MSGFYLTRQHFSVDDFLAIYHLLKGIEGTVKGRYTAIMNKLGTLQPALLNGGCHEQIIVE 121 Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH 171 + ++++AI +TL R ++ P +L Q WYL A Sbjct: 122 MSTSEH--ERTWVRQMLKAIESSNLITLHYTSASGSRSERQVEPLQLYWEQGVWYLEAYC 179 Query: 172 --EGHIAVFTLDEIHLIQPLQETF 193 + +F + I ++ + TF Sbjct: 180 LLQQSKRIFRVSRITGLEISENTF 203 >UniRef50_C6J5X9 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5X9_9BACL Length = 319 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 75/236 (31%), Gaps = 31/236 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG------- 62 A RL ++ L +S R+LA VS RT+ RD + + + G Sbjct: 2 RADRLLNLLLLLQNRGKMSSRQLAELLEVSERTIVRDIEALSAAGIPVYAERGSRGGWVL 61 Query: 63 ---YCRLRTAGSEMQMVPDVLI----FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 Y T ++V +L G+ G F ++L+ A + Sbjct: 62 ADSYRTNLTGMRPEEIVSLLLTNHNELLKDLGIQGDFQAAYQKLLAAAPAPIRQDAEMIR 121 Query: 116 AN-------PVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTW 165 S + +A+ +R+ + + P L+ + W Sbjct: 122 ERLHIDGAGWHASEEAFPWLSAVQEAVWTQRKQRIRYRKEDDVTERIIHPLGLIAKRNVW 181 Query: 166 YLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHF 215 Y+ AE E + F + + L+ETF R D F LP + Sbjct: 182 YVAAEQEPDRELRTFRISRLEEASLLEETFVRPDGFDLAAYWEQSTARFKSELPRY 237 >UniRef50_A1T989 Helix-turn-helix, type 11 domain protein n=6 Tax=Actinomycetales RepID=A1T989_MYCVP Length = 321 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 25/215 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLE------YQSGY 63 A RL I+ L + ++ ++A E VS RT RRD + + Sbjct: 8 RADRLVAILLLLQQRKQVTASEVALELEVSERTARRDLEALSGAGVPVYAMPGRGGGWRL 67 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP----------CVI 113 + +G A + + L+ P V+ Sbjct: 68 LGGARTDLSGLTASEARALFLVAGPASTATPSVKAALRKLVRALPEPFREQAEAAATSVV 127 Query: 114 APANPV----PSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165 P P L +A+ +V L R + P ++ + TW Sbjct: 128 VDPRHWGSSQPEPRPPRFLDELQEAVIRGVQVRLGYVDRKGSQTERTVHPLGIVAKRPTW 187 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 YLV+ + F +D + ++ + +R Sbjct: 188 YLVSNTDAGRRTFRIDRVSSVELTDDAVQRPQGFD 222 >UniRef50_A9AVG2 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AVG2_HERA2 Length = 320 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 60/215 (27%), Gaps = 30/215 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY--QSGYCRLR 67 RL I+ L A + LAA F +SVRT+ RD + + GY + Sbjct: 3 RVDRLLAIVLELQAHQRRRAADLAATFEISVRTVYRDILALCEAGVPIISVPGQGYSLVE 62 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGL-----------FPGLDRRLVNALLMCDESPCVIAPA 116 + GL L +++ L Sbjct: 63 GYFLPPLQLTPAEALLIVQGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTMQQ 122 Query: 117 -----NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---------RCERLAPCRLLIHQ 162 + L +AI +R + + GR + P +L + Sbjct: 123 GMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRTTPFAAARHTTRMVDPYQLTCVR 182 Query: 163 QTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRR 195 WYL + F ++ I + L TF Sbjct: 183 TVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEP 217 >UniRef50_Q15PY3 Helix-turn-helix, type 11 n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PY3_PSEA6 Length = 238 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 24/213 (11%) Query: 10 RLAVRLSLIISRLVA-GETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS--GYCR 65 R A RL+ I+ L + ++ + LA VS RT+ RD ++ + + + ++ GY Sbjct: 2 RKAERLNDIVHHLRRMHQAVTAQTLAETLEVSHRTIYRDIQDLIDSGVPILGEAGVGYVI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGL-------AGLFPGLDRRLVNALLMCDESPCV------ 112 + M + A G+ F + + +P + Sbjct: 62 DKKYHLPPIMFDADELEAIALGIGMVSNWTDEKFAEKAQSAYRKIQATLPAPLINELHQI 121 Query: 113 -IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167 A ++F + + I + V+ + + P L+ W L Sbjct: 122 STFSAPSRYKIPWQVNFTEVRECIRRKHLVSFTYTDLSDQQSQRTIRPLALISFSPIWLL 181 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198 G F LD I L ++ Sbjct: 182 AGWCELRGAYRNFRLDRISEFTKLNTRYQDEKD 214 >UniRef50_C1XZ61 Predicted transcriptional regulator, COG2378 n=2 Tax=Meiothermus RepID=C1XZ61_9DEIN Length = 337 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 71/238 (29%), Gaps = 27/238 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65 A RL I+ L ++ R+LA VS RT+ RD Y + + G+ Sbjct: 15 RADRLLSILLILQIRGRVTSRQLAERLEVSERTIHRDMEALTAAGVPVYAERGSRGGWRL 74 Query: 66 LRTAGSEMQMVPDVL----------IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 L +++ + GL+ G +L+ +L Sbjct: 75 LADYRTDLTGLKPGEVQALLVGQPNRLLEDLGLSRASEGAWIKLLASLPALYRREAESVR 134 Query: 116 ANPVPSPSGAL----SFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYL 167 P GA L++A+ R++ I L P L+ TWYL Sbjct: 135 GRIYIEPRGAAEPVPHLPTLLEALWRNRKLHTIYRRNDGKISERLLDPLGLVAKGSTWYL 194 Query: 168 VAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLV----EDPVFIQALPHFRFIQHS 221 VA + + + + + E R + LP + Sbjct: 195 VAWNGDDYRTYRVSRVQEARLSLEPAIRPPDFDLQSFWERSQTELKEQLPRYDVRVQV 252 >UniRef50_D0L3I9 Helix-turn-helix type 11 domain protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L3I9_GORB4 Length = 328 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 21/211 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL ++ L ++ +LA E VS RT+ RD +Y + G+ Sbjct: 2 RAERLLAVLMLLKTHSRMTAAQLADELDVSERTVLRDIDALSLSGIPVYAERGRHGGFAL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVNALLMCDE-------SPCVIA 114 L +++ + +G L F R++ +L ++ Sbjct: 62 LPGYRTDLSGLTLDEARTLVAGGGRLDSPAFASAMRKVAASLPDAFRTSAVRAAQRILLR 121 Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLI-----AEGRRCERLAPCRLLIHQQTWYLVA 169 P V P + + QA+ RR+ + AE L P L++ TWYLVA Sbjct: 122 PEGFVHPPREIDALGPVQQAVFDGRRIRVRYRRRGAERAAERVLDPIGLIVAGDTWYLVA 181 Query: 170 EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 +G ++ + + ++ L E R D + Sbjct: 182 TADGTERMYRMSRMSDVEILDEPAARADDVD 212 >UniRef50_UPI0001C3233A Helix-turn-helix type 11 domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3233A Length = 324 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 82/256 (32%), Gaps = 33/256 (12%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYC 64 R R+ ++ L + ++ +LA GV RT+RR + + + +E GY Sbjct: 3 RPTTRVLELLELLQDRQQVTGPELAQRLGVDHRTVRRYIAKLEELGIPVEADRGRRGGYR 62 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGL-----------AGLFPGLDRRLVNALLMCDESPC-- 111 M+ D A GL A ++L L + Sbjct: 63 LRPGFKLPPLMLTDDEASAVVLGLLAAQSSGLTTAAPAVESALQKLRRVLPVELRERVRA 122 Query: 112 ------VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIH 161 PA P+P + L AI RRV + R +L P ++ H Sbjct: 123 LEQALGFTRPAPHAPAPPQTETVLALADAIGRERRVEVAYATRDGAASTRQLDPYGVVFH 182 Query: 162 QQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP---HFR 216 WYL A G + LD I ++ L+ + + + +P Sbjct: 183 NGRWYLSAHDHGRGELRTLRLDRIGSVRILRRAAPKPPGFDAVEHVNRALARVPWTNEVE 242 Query: 217 FIQHSLLTFVPADSPP 232 + + L + PP Sbjct: 243 VVLDAPLAEIRRQVPP 258 >UniRef50_C9RCX8 Transcriptional regulator-like protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RCX8_AMMDK Length = 330 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 71/243 (29%), Gaps = 32/243 (13%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL------DLEYQSGYCRL 66 R+ I + AG+ + R+LA EFGV RT+ D + + L D Y Sbjct: 8 ERILKIDELIRAGKYPNPRQLAQEFGVQERTIYLDRQFMVDRLGAPIAYDRRRGGWYYTD 67 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES----------------P 110 V + + A + L LL E Sbjct: 68 PNWALPTVFVTEGELLAFLLSVEVAKRYLGTPFEKPLLSAVEKIRRSLKGQVEVNLAELQ 127 Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQTW 165 V +P + L +AI R+V + + P L + W Sbjct: 128 AVSFLTSPSSVAVNERLLFDLQRAIVENRKVKINYFTASRGSWQERVVEPYHLFNLRGDW 187 Query: 166 YLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLC-RLVEDPVFIQALPHFRFIQHSL 222 YLVA + VF I Q L E F R+ + FI + Sbjct: 188 YLVAFDHFRQDMRVFHTGRIDRWQVLSEVFVRDPHFSVQEWMKQAFIA--ERGEGPVEVV 245 Query: 223 LTF 225 + F Sbjct: 246 VRF 248 >UniRef50_Q39LZ1 Transcriptional regulator-like protein n=1 Tax=Burkholderia sp. 383 RepID=Q39LZ1_BURS3 Length = 326 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 77/243 (31%), Gaps = 30/243 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65 A RL I+ L A ++ LA VS RT+ RD + + + G+ Sbjct: 2 KASRLLSIMMMLQARGRMTAPALADALEVSERTILRDIDQLSTAGVPIWGDRGRNGGFQL 61 Query: 66 LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALL-------MCDE 108 +++ + + A GL G+ +++ +L Sbjct: 62 SDGWRTDLTGLTEHEAHALILAGLPGPASELGLDGMATSARLKMIASLPPGSREHADRVA 121 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIHQQTW 165 S + + + + A+ G R+ + + L P L++ W Sbjct: 122 SRLHVDTVDWYRAQETPAFLREVADAVWGSYRIDVKYQSWSSVSRRELEPLGLVLKGGAW 181 Query: 166 YLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 YLVA+ G F L I + + F+R + A+ + + L Sbjct: 182 YLVAKVVGKPGALTFRLANILEFEATRRRFKRPARFDLATH---WRDAMSRYETDLNRLT 238 Query: 224 TFV 226 + Sbjct: 239 AHI 241 >UniRef50_A5FLV0 Helix-turn-helix, type 11 domain protein n=3 Tax=Flavobacteriales RepID=A5FLV0_FLAJ1 Length = 319 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 28/225 (12%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS-- 61 + R+ I+ +L + + + ++LA F S+RT+ RD R + + ++ Sbjct: 2 LDETPKRFDRIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAGV 61 Query: 62 GYCRLRTAGSEMQMV--PDVLIFAHRSGLAGLFPGLD----------------RRLVNAL 103 GY + M +V F L F R Sbjct: 62 GYALMDGYRLPPVMFTREEVSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKDY 121 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRL 158 L ES V+ A P+ + + + L + I ++++ L + L P + Sbjct: 122 LSNIESRIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQILLTYKTFDKEETTQRNLEPVGV 181 Query: 159 LIHQQTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCR 201 WY + F D I I+ F Sbjct: 182 FHDNNNWYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALE 226 >UniRef50_UPI000050FDF4 DeoR family transcriptional regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FDF4 Length = 332 Score = 114 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 71/243 (29%), Gaps = 35/243 (14%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLR 67 RL ++ L AG T + +L A FGV+ R++RRD + GY Sbjct: 5 SRLLSLLGMLAAGRTYTAGELGAHFGVTPRSVRRDIASLRELGYVIESLPGATGGYRAHS 64 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLF-PGLDRRLVNALLMCDES--PCVIAPA-------- 116 + A GL+ L GL V + + P V+ Sbjct: 65 RTVLPPLQLQTGEALATAVGLSLLNGAGLSTTDVESATAKLRTMLPPVMHKTIGDISTAV 124 Query: 117 ---NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----------RCERLAPCRLLIHQ 162 + AI R +T E R R+ P R+++ Sbjct: 125 SVLPGHEPGVDMTAVMTTTSAIASRNVLTFAHEKRRPTRSETRSETTQRRVEPVRMVVLG 184 Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220 WYL VF LD + I F D V A+ + Sbjct: 185 GHWYLYGWDLTRSDWRVFRLDRMSEIHETTFAFAPRDHPDAEV---AVSSAVTTAAYRHT 241 Query: 221 SLL 223 +L Sbjct: 242 VIL 244 >UniRef50_B9KCA9 Putative uncharacterized protein n=1 Tax=Campylobacter lari RM2100 RepID=B9KCA9_CAMLR Length = 306 Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 9/209 (4%) Query: 11 LAVRLSLIISRLVAGE-TLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTA 69 RL ++ +LV E +++++LA E VS +T++RD + + L R+ T+ Sbjct: 12 KLTRLEVLYEKLVKSENGITIKELAQELNVSAKTIKRDMQGVFEPMGLIKNGRKWRIDTS 71 Query: 70 GSEMQMVPDVLIFAHRSGLAG----LFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 + + +I +A F L++ L +P + Sbjct: 72 KDTQEQDDEKIILEVLDTMAKSAGNSFYAKAHPLLSKLSQNISNPIHTSLDAEKLEEKDL 131 Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEH---EGHIAVFTLDE 182 +F L QAI + ++ E + + P +L WYL+A F L Sbjct: 132 NNFQILEQAINTKTQIVFKYENKLF-QAKPLKLAFFSGFWYLLAFDMKKRDIFKKFYLKN 190 Query: 183 IHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 I I QE F+ ++SL ++ I Sbjct: 191 IQNITLTQEHFQTDESLEIKLQRVNSIWF 219 >UniRef50_C7NJB0 Predicted transcriptional regulator n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NJB0_KYTSD Length = 238 Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 71/222 (31%), Gaps = 26/222 (11%) Query: 9 DRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG----Y 63 D + R +++S L + +LA ++ RT+RRD D+ G Y Sbjct: 2 DSPSSRALVLLSLLQTRRAWTALELARHLDIAERTVRRDISRLRSLGYDIRSAPGPGGTY 61 Query: 64 CRLRTAGSEMQMVPDVLIFAHRSGLAGL---FPGLDRRLVNALLMCDESPCVIAPAN--- 117 + + ++ + + +GL L P V A L P + A Sbjct: 62 RLVPSIKIPPLLLDADEVCSLVTGLLILEAGSPDTAAAAVRAKLEQLLPPRLRHRAAATA 121 Query: 118 -------PVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWY 166 PV + L +A+ ++ + + + P R ++ WY Sbjct: 122 LATQVITPVAKTADWHLLGLLAEAVAQQQHLQFTYTDQHGEVTERLVNPYRHVLRNGIWY 181 Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206 LVA +F LD IH R+ L Sbjct: 182 LVAFDTKRDDWRLFRLDRIHDA--SPRPAPRDFDLPDFPPTS 221 >UniRef50_Q1GFN4 Helix-turn-helix type 11 n=8 Tax=Rhodobacteraceae RepID=Q1GFN4_SILST Length = 229 Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 67/212 (31%), Gaps = 23/212 (10%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRL-- 66 R RL II L G+ + +AA VS RT+ RD + + +E + G + Sbjct: 2 RRTDRLFEIIQILRDGKLHRAQDIAARLEVSTRTIYRDMDTLVASGVPVEGERGVGYMVR 61 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA-----------LLMCDESPCVIAP 115 + + A G+A + D L +A L + + Sbjct: 62 EAITLPPLTLTPSELEALNLGMAIVAEAADPELKSAAESLAAKVDAVLPVETVAEAEAWK 121 Query: 116 ANPV---PSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168 + G L AI R+++ L + P + + W L Sbjct: 122 FAVYPFGDAARGFAWMPTLRAAIKARQKLALRYRRIDQTLTERVIRPLHMEYWGRVWTLT 181 Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198 A G VF +D I + L E F Sbjct: 182 AWCETRGDFRVFRVDLIETAEALPELFVDEPG 213 >UniRef50_B2UBT2 Helix-turn-helix type 11 domain protein n=43 Tax=Proteobacteria RepID=B2UBT2_RALPJ Length = 232 Score = 113 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 61/212 (28%), Gaps = 23/212 (10%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS-- 61 R R A RL I L + LA GVS RT+ RD R+ + + +E ++ Sbjct: 1 MPRMTRRADRLFQIAQILRGRRLTTAAMLADRLGVSERTVYRDIRDLSVSGVPIEGEAGI 60 Query: 62 GYCRLRTAGSEMQMVPDVLIFAHRSG-----------LAGLFPGLDRRLVNALLMCDESP 110 GY M + A +G +A +L+ AL S Sbjct: 61 GYRMRAGYDLAPLMFTADEVEALVAGARMIKAWSGGTMADSVEAALEKLMGALPAERRSE 120 Query: 111 CV---IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQ 163 I F L A+ L + P L Q Sbjct: 121 AETTRIFAPGYGMGSEVKQVFDTLHAALGRHAVARLAYRDAQGQLTERCIQPLGLFFWGQ 180 Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQETF 193 W + A F LD + L+ F Sbjct: 181 VWLVAAWCEHRQDYRTFRLDRCVKVDILERHF 212 >UniRef50_C0ZA21 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA21_BREBN Length = 306 Score = 113 bits (282), Expect = 6e-24, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 22/216 (10%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65 RL ++ + T++ ++LA F VS+RT+ RD + + + GY Sbjct: 2 RVDRLLSMLLIISKKGTVTGKELAEHFEVSIRTIYRDIEKLGEAGIPIASIGGKGGGYYI 61 Query: 66 LRTAGSEMQMVPDVLI---------FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116 + + + + G F + ++ N L + + Sbjct: 62 MEDYNVDNLFLNKDEASTFMAIMNNLSFLFGKNTTFHDIVLKIENTLKQEKNTSKLDINL 121 Query: 117 NPVP-SPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEH 171 + L AI + V R + P ++ WYLV Sbjct: 122 SHFSMENELKEYLLLLNNAIEKNKLVVFEYINRSMEYLERTVEPFQITFSAGQWYLVGFC 181 Query: 172 --EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 F L I ++ E F + D + +E+ Sbjct: 182 KERNGYRRFKLVRIKNLKM-GEDFEKKDISNKEIEE 216 >UniRef50_C4RL45 DeoR-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RL45_9ACTO Length = 341 Score = 113 bits (282), Expect = 6e-24, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 59/195 (30%), Gaps = 26/195 (13%) Query: 29 SVRKLAAEFGVSVRTLRRDFRERL-MYLDL---EYQSGYCRLRTAGSEMQMVPDVLIFAH 84 S +LA GV+VRT+RRD + + + ++GY A ++ D A Sbjct: 22 SGTELADRLGVTVRTVRRDVDRLRELGYPVHASQGRAGYRLGAGAVLPPLLLDDDEAVAV 81 Query: 85 RSGLAGLFPG-----------LDRRLVNALLMCDESPCVIAPANPVP-----SPSGALSF 128 GL +L L V G Sbjct: 82 AIGLRTAAASAVTGIDETALRAMSKLEQVLPARLRHQVAAVQHATVRAGHPGPTVGPDVL 141 Query: 129 WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDE 182 + A R R+ GR + P L+ + WYL+A G F +D Sbjct: 142 ATISTACYRRERLRFDYTDHHGGRSNRLVEPHTLVSFARHWYLLAWDTGRGDWRCFRVDR 201 Query: 183 IHLIQPLQETFRRND 197 + P F R + Sbjct: 202 LRPWTPTGPRFARRE 216 >UniRef50_Q0REC1 Putative DeoR family transcriptional regulator n=1 Tax=Frankia alni ACN14a RepID=Q0REC1_FRAAA Length = 374 Score = 112 bits (281), Expect = 7e-24, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 75/253 (29%), Gaps = 32/253 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL I L A E L+ ++A GVS RT+RRD +Y + G+ Sbjct: 2 RASRLIAITMMLQAHERLTAAQIAGRLGVSDRTVRRDLDVLGELGVPLYSERGRGGGWRL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRS----------GLAGLFPGLDRRLVNALLMCDESPCVI-- 113 + S++ + GL R+L+ AL Sbjct: 62 VHGWRSDLSGLTADEAHGLFLVAGPAARPGLGLEPAVDSALRKLLAALPAATRPDAEAVT 121 Query: 114 ---------APANPVPSPSGALSFWRLIQAITGRRRVTLIA------EGRRCERLAPCRL 158 V P+ + +++A R E R + P L Sbjct: 122 ATLLVDPGRWGGPAVTPPAPLATLAGILRAGHRARVRYAGRAARAAGEPARDRDVDPYGL 181 Query: 159 LIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218 + WYLVA + + I + L E R L +A+ + Sbjct: 182 VQKGDVWYLVAGTDAGPRTLRVSRIESVTELDEPANRPADLDLPALWAQSRRAVEERMWA 241 Query: 219 QHSLLTFVPADSP 231 L PA P Sbjct: 242 YRVRLRADPAIVP 254 >UniRef50_C7PEN6 Helix-turn-helix type 11 domain protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEN6_CHIPD Length = 318 Score = 112 bits (280), Expect = 8e-24, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 39/249 (15%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER---LMYLDLEYQSGYCRLR 67 RLS I+ +L + + ++A F +S+RT+ RD R + + E +GY + Sbjct: 3 RIDRLSAILIQLQGKKIVKAAEIAERFNISLRTVYRDVRALQEAGVPVGAEAGTGYYLVE 62 Query: 68 TAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGLDRRLVNALLM 105 M A +G + + G ++ + +L Sbjct: 63 GYHLPPVMFSREEAAALLTGEKLMANLSDHSNRKEFSNAMQKIKAVLRGSEKDFLESLED 122 Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLI 160 V++ PV + ++ + + L E + P ++ Sbjct: 123 NI---AVVSRRPPVGEEFPNRFLSDIQHSLGKQLILQLDYFALHNETHTKRDVEPIGIIF 179 Query: 161 HQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218 W+L+A F +D I + + + + + ++ + Sbjct: 180 MNGYWHLIAWCRLRHGYRDFRMDRIKNVGVSADNYDKQRHITLK----EYMDRYGEYETQ 235 Query: 219 QHSLLTFVP 227 H + P Sbjct: 236 AHMVKIRFP 244 >UniRef50_Q0RND8 Putative deoR-family transcriptional regulator n=1 Tax=Frankia alni ACN14a RepID=Q0RND8_FRAAA Length = 420 Score = 112 bits (280), Expect = 9e-24, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 72/277 (25%), Gaps = 59/277 (21%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69 + RL+ ++ L A + +LAAE VSVRT+ RD + L + G Sbjct: 2 RSSRLTALLLHLQAVRRATAAQLAAELEVSVRTVHRDIAALQDAGVPLWTEPGRAGGVRL 61 Query: 70 GSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRLVNALLM-------CD 107 + D L + L AG+ +++ L Sbjct: 62 MDGWRTSLDGLTGDEAAALLLIGAGPEVLAGLGLAGIAAAARTKVLATLPPRPRVQAGQV 121 Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---------------------- 145 ++ L +A+ RRV L Sbjct: 122 RQRFLLDAPGWFHREEAVPHLATLAEAVWAGRRVDLRYARVGDDPAGAAGAAGAAGAAGA 181 Query: 146 --------------EGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQE 191 R+ P L+ TWYL A H G + + + I E Sbjct: 182 AGAAGAAGAAGEEAGRGVARRVDPLGLVCKAGTWYLAARHRGDVRSYRVGRISQANLRAE 241 Query: 192 TFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228 TF R D L PA Sbjct: 242 TFDRPDGFDLAAWWRAGSDEFARSLLRWTCRLRLSPA 278 >UniRef50_A9KIF8 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIF8_CLOPH Length = 307 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 18/199 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCR 65 RL I L+ + S LA F VS RT+ RD L + + GY Sbjct: 2 KIDRLLAITIYLLNHKRTSAGDLANRFEVSTRTIMRDIDSLCLAGIPVISTFGVDGGYEI 61 Query: 66 LRTAGSEMQMVPDV---LIFAHRSGLAGLFPGLDR----RLVNALLMCDESPCVIAPANP 118 ++T E Q+ ++ I A GL+ +P + + +L VI Sbjct: 62 MKTFQMEKQVAGEIDYSFILAALKGLSTAYPDRELENTIEKLQSLGENSTQSIVIDLGVA 121 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--HE 172 L AI V + + P ++ WYL+A Sbjct: 122 NEHKGINSLLSMLSHAIKIEHIVEFTYTNTDNITKSAVVEPVSIIYKWYHWYLLAYQPSH 181 Query: 173 GHIAVFTLDEIHLIQPLQE 191 ++ L + + + Sbjct: 182 ETYCLYKLIRMEHLTIHDQ 200 >UniRef50_D1A246 Helix-turn-helix type 11 domain protein n=3 Tax=Actinobacteria (class) RepID=D1A246_THECD Length = 317 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 67/212 (31%), Gaps = 29/212 (13%) Query: 15 LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ---SGYCRLRTAG 70 + ++S L +LAA+ GVS RTLRRD + ++ + G +LR+ Sbjct: 1 MLRLLSLLQTRRYWPGPELAAKLGVSERTLRRDIDRLRELGYPVDAERGVGGGYQLRSGT 60 Query: 71 -SEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP--------- 120 ++ D A GL G V + + + + Sbjct: 61 AMPPLLLDDEEAVAIAVGLRSAAAGAVGAGVGETSVRALAKVIQVMPPRLRRRVQALQDY 120 Query: 121 ---------SPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYL 167 A + L Q R+ R + P RL+ + WYL Sbjct: 121 TEPGTGGAGPAVDAEALTVLAQCCRDGERLRFAYRARDGRQSARTVEPHRLVALDRRWYL 180 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197 VA VF +D + P E FR Sbjct: 181 VAWDLERLDWRVFRVDRLGDPLPAGERFRPRP 212 >UniRef50_C9LWR7 HTH domain protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LWR7_9FIRM Length = 308 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 84/239 (35%), Gaps = 31/239 (12%) Query: 3 QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD------ 56 Q + D + RL + RL GE LS R+LA ++ VS +T++RD YL Sbjct: 2 QTDTHADNRSYRLLDLYKRLQQGEALSKRELADQYRVSEKTVQRDIEGLREYLAGEQSYL 61 Query: 57 ---LEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGL-DRRLVNALLMCDES--- 109 + ++G R+ +E +V + FP +RL+ LL Sbjct: 62 EVVYDKEAGGYRISRESAEGLQPEEVFAVCKILLESRPFPKAVMQRLLGKLLSQVSREKR 121 Query: 110 ----PCVIAPANPVPSPSGALSF----WRLIQAITGRRRVTLIAEG----RRCERLAPCR 157 + + P WRL AI +R + + P Sbjct: 122 DVVEKLIAQETHHYTEPQHGRDVIPALWRLAAAIREQRITSFSYTRLDGVCHERVVKPVA 181 Query: 158 LLIHQQTWYLVAEHEGH----IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212 +L + +YL+A + VF +D + I +E F ++ F + + Sbjct: 182 ILFSEFYFYLIAYYADDSADYPIVFRIDRMEKISVKKERFSVP--YRERFKEGEFRKRI 238 >UniRef50_C9MZ16 HTH domain protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MZ16_9FUSO Length = 315 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 84/244 (34%), Gaps = 29/244 (11%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY------ 54 M + + ++R+ II RL E L+ LA EF V ++T++RD Y Sbjct: 1 MAGKNQNSEEKSIRILKIIKRLYQKEILNGTDLANEFNVDIKTVQRDIETLRAYFLEENG 60 Query: 55 --LDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALL-------M 105 + L + ++L + + F + + + L Sbjct: 61 AEIKYSKSKKGYYLEENSEKSFTNEEILAISKIILESRAFNKNETQTLINKLINHSSGND 120 Query: 106 CDESPCVIAPANPVPSPSGALSF-----WRLIQAITGRRRVTLIA----EGRRCERLAPC 156 + +I P W L Q I + + + + + + P Sbjct: 121 RETIKGLINSEKSNYIPLQHGQNLLTVIWNLAQHIKNQELININYTTKDKQGKNYNIKPL 180 Query: 157 RLLIHQQTWYLVAEHEGH---IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 ++ + +YL+A E A+F +D I I+ + F+ + + +D F + + Sbjct: 181 SVMFSEYYFYLIAYIENKEEYPAIFRIDRITEIENTGKKFKI-LNYSKKFKDGEFRKYI- 238 Query: 214 HFRF 217 HF Sbjct: 239 HFMH 242 >UniRef50_B1HQ46 Putative uncharacterized protein n=2 Tax=Bacillaceae RepID=B1HQ46_LYSSC Length = 314 Score = 112 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 30/208 (14%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL ++ ++ + +++++A E GVS RT+ RD E +Y + GY Sbjct: 3 KAQRLIQLMMKVNERKKFTIQEMAEECGVSRRTMIRDLMELSELGVPLYSEAGPNGGYRV 62 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------------------VNALLMCD 107 LR + A L + + Sbjct: 63 LREKVLPPISFTEHEAIALFFACQSLHNYKALPFKNEVNTALDKFFYYLSSELKQKIESM 122 Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC--ERLAPCRLLIHQQTW 165 + + L+ A ++ VT++ E + P + W Sbjct: 123 QQRLLFWVPPHELEVPFL---KELLDAALQQQVVTILYESATTKNRTIQPLGIYTMNGLW 179 Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQE 191 Y A VF +D + ++ Sbjct: 180 YCQAYCFLAEDYRVFRIDRVKDFSFAED 207 >UniRef50_A9E8Y8 Helix-turn-helix, type 11 n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9E8Y8_9RHOB Length = 220 Score = 112 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 64/205 (31%), Gaps = 19/205 (9%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDL--EYQSGYCRLRTA 69 RL +I RL G+ LA FGVS RT+ RD + L + GY Sbjct: 8 DRLVALIDRLRNGQVHRAEDLARRFGVSTRTIYRDMDKLSASGLPVAGTRGEGYRITPAI 67 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------VNALLMCDESPCVIAPANPVPSPS 123 + + A GLA D L + A IA Sbjct: 68 TLPPLTLTPAELEALNLGLAVAAEVGDPALQDAAETLAAKFDAVLPTETIAEGAAWSQAL 127 Query: 124 GA--------LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175 + L A+ R+++ + + + P ++ + W L A EG Sbjct: 128 RSQGKATRVFAHLPVLRAAVQARQKLRIGVADSGSQVVRPLKVENWGRFWVLTAWCEGTE 187 Query: 176 A--VFTLDEIHLIQPLQETFRRNDS 198 F LD I + L E F Sbjct: 188 RLATFRLDLIESAEALPELFVDEPG 212 >UniRef50_Q2LTY7 Predicted transcriptional regulator, DeoR family n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LTY7_SYNAS Length = 346 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 15/221 (6%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL-EYQSG 62 E+ + +RL I+ + + +S L+ F ++ RT++RD + E Q G Sbjct: 36 EKNVQKRLIRLGQILRVFLDKDRVSSIWLSRNFQITPRTIQRDLAALKESGFPIHEIQKG 95 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAP 115 RL + V D A L + F L N+L S V Sbjct: 96 VYRLGKDLIKNLEVFDETELALVITLRNVVGQLGRPFQKAADGLFNSLYDAASSMPVYVR 155 Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERL--APCRLLIHQQTWYLVAEHEG 173 P + R++++I ++ + + ++ P R++ WYLV + G Sbjct: 156 -MDESIPLDSSLLNRIVKSIRLKKIAGFYYKSGKPHQVNMEPYRVVHFGGFWYLVGKDTG 214 Query: 174 H--IAVFTLDEIHLIQPLQETFRR-NDSLCRLVEDPVFIQA 211 I + LD I + + FR+ ++L ++ I Sbjct: 215 DSVIKRYALDRISDFKMARTPFRKIPENLDSAIQGSANIWF 255 >UniRef50_A6GCU0 Putative transcriptional regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GCU0_9DELT Length = 230 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 61/217 (28%), Gaps = 27/217 (12%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY 59 M R A RL I+S L + LA VS RT+ RD R+ + +E Sbjct: 1 MATTM----RRADRLFQIVSLLRGRRMATAAWLAERLEVSERTIYRDIRDLAGSGVPIEG 56 Query: 60 QS--GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--------------VNAL 103 ++ GY ++ M I A G + D L + Sbjct: 57 EAGVGYRLAKSFELPPMMFSVDEIQALVLGARMVETWGDDELRGAARRVLDKTTAVLPEE 116 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLL 159 + + + + + RR++ + P L Sbjct: 117 QRGIIDETALFSMSFRVTDEVRAHLAVARRGVHERRKLEFSYVAEAGATSERIVRPLGLY 176 Query: 160 IHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFR 194 +W L A F LD + + L F Sbjct: 177 FWGPSWSLGAWCELREDFRNFRLDRVERMALLDAQFE 213 >UniRef50_Q65MX4 Putative uncharacterized protein n=2 Tax=Bacillus RepID=Q65MX4_BACLD Length = 315 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 30/210 (14%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 A RL+ +I + + +V +LA EFGVS RT+ RD +E +Y + GY Sbjct: 3 KAKRLNEMIMMVNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGYQV 62 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGL-----------FPGLDRRL-------VNALLMCD 107 L + + + L + + ++ + + Sbjct: 63 LNERILPPIAFSENEAISIFFAIDALKHYISLPFDAQYASIKKKFYLNLSGDIRDAIDSM 122 Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQT 164 + P L++A ++ + + E + P + +Q Sbjct: 123 KDRVAFY--TPYEQTDDIPVLKVLLEAAVQQKVLIIEYEANGASSKRSIQPIGIYANQGK 180 Query: 165 WYLVAEH--EGHIAVFTLDEIHLIQPLQET 192 WY A +F D I + + Sbjct: 181 WYCPAYCFLRKDYRIFRCDRIKRAELDEHK 210 >UniRef50_Q11UB6 Transcriptional regulator, DeoR family n=7 Tax=Bacteria RepID=Q11UB6_CYTH3 Length = 230 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 66/216 (30%), Gaps = 25/216 (11%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL--EYQSG 62 + RL+ II++L L+ +LA F VSVRT+ RD R + + E G Sbjct: 3 DNDTKRLSRLTAIITQLQTKRLLTATELANRFSVSVRTIYRDIRALEQSGVPILTEEGKG 62 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122 Y + M + A + D V + + Sbjct: 63 YTLMEGYRIPPVMFTESQANALILAEQLVLKNKDASFVQHYSEAIDKIKAVLGHPIKDKV 122 Query: 123 SGALSFWRLIQ----------------AITGRRRVTLIA----EGRRCERLAPCRLLIHQ 162 + R Q A+T + E + + P LL Q Sbjct: 123 NLLAERTRFDQNTNRERNSKDLSDLQFALTNFYLTRIEYINEAEAQTDRLIEPFALLSTQ 182 Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRN 196 + W LVA F LD I ++ E F + Sbjct: 183 ENWLLVAWCRLRNEFRYFRLDRIKKLEIQTEKFNPH 218 >UniRef50_Q1GC92 Helix-turn-helix type 11 n=19 Tax=Alphaproteobacteria RepID=Q1GC92_SILST Length = 252 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 74/218 (33%), Gaps = 26/218 (11%) Query: 2 TQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL---MYLDLE 58 T+ + +RL RL + +L ++ +LA + GVS RT+ RD +D Sbjct: 20 TRQMTKTERL-FRLMQTLRQLP--PPVTAEQLAQDLGVSARTIHRDIDALRALGAVIDGA 76 Query: 59 YQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-----------RRLVNALLMCD 107 G+ + A + A GL + D R+L L Sbjct: 77 AGFGFTLIEDATLPPLGFGATELEALVLGLCEVQQKGDPDLAEAARTALRKLRARLPQSQ 136 Query: 108 ESP---CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLI 160 V++ + P + + L QA R V + P L+ Sbjct: 137 AKRLQHAVLSAHSFAPPLTPTVDAAELRQATWDEREVGFDYVDVKGAVTQRHVKPLGLVY 196 Query: 161 HQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRN 196 ++ LVA VF LD + ++ Q +FR + Sbjct: 197 FDKSSVLVAWCRLRQDFRVFRLDRMTSLEVTQISFRPH 234 >UniRef50_D1B1H8 Putative uncharacterized protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1H8_SULD5 Length = 307 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 11/221 (4%) Query: 1 MTQAER-RHDRLAVRLSLIISRL-VAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLE 58 M + ER ++ R++ I L + + +S++ L+ + VS +T++RD E L Sbjct: 1 MPKVERPSNNSKWERINTIYELLKQSCDGMSIQDLSKQMDVSTKTIQRDLYEVLGEYGAV 60 Query: 59 YQSGYCRLRTAGSEMQMVPDVLIFAHRSG-----LAGLFPGLDRRLVNALLMCDESPCVI 113 Q +L + +E + + I F G L+ + E P Sbjct: 61 KQGRMWKLDSKKAEDNLNSNERIILGILDEMAKNAGSSFYGKAHSLLKQISQQLEHPIFA 120 Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAE--- 170 + S F L +AI + V+ + + P +L WYL+A Sbjct: 121 NVESESLDESHIELFSLLEKAIKTKHTVSFTYKKHLF-DVQPLKLAFFDSFWYLLALDIQ 179 Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 + F L I+ + TF N +L ++ I Sbjct: 180 DDNKFKKFYLKSINDLTIQDNTFSINTTLEERLKKANSIWF 220 >UniRef50_B1QLR3 HTH domain protein n=9 Tax=Clostridium RepID=B1QLR3_CLOBO Length = 309 Score = 110 bits (276), Expect = 3e-23, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 20/215 (9%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 RL I+ ++ + +S LA F VS RT+ RD +Y ++ + GY Sbjct: 2 KIERLLGILFYIINRDNVSANNLAEHFNVSRRTILRDINTLTLAGIPIYSEVGSKGGYSI 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRR-------LVNALLMCDESPCVIAPANP 118 +++ + L L + V + + + Sbjct: 62 NPDYRLNEKIIDNANSEYMLLALQSLKSVYGEKKVHETYEKVKHIYSDKNNNHALNIDFS 121 Query: 119 V--PSPSGALSFWRLIQAITGRRRVTLIAEGRR--CERLA--PCRLLIHQQTWYLVAEHE 172 + + S L +AI + V+ + +L +WY Sbjct: 122 IVNENRSITFYISMLKEAIQHNKTVSFQYTNLNGDTRIVKCNIIHVLYKWYSWYAFGYDL 181 Query: 173 GH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205 +F + + ++ + F + + +L++D Sbjct: 182 EKSDFRMFKIVRMRNLEISEMYFDNDYDVTKLLDD 216 >UniRef50_D1C4L3 Helix-turn-helix type 11 domain protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4L3_SPHTD Length = 354 Score = 110 bits (275), Expect = 4e-23, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 27/245 (11%) Query: 10 RLAVRLSLIISRLVAGE-TLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ----SGYC 64 + A R+ IIS++ A + R LA + +S R + +D + L LE + GY Sbjct: 18 QRASRILEIISKISAAPNQWTRRSLAEHYEISERQITKDLQVIRHGLRLELERQPSGGYY 77 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLFP---------GLDRRLVNALLMCDESPCVIAP 115 A + +++ + P + Sbjct: 78 FKTLPRLPAVSYSLAEALAIFLAAQAGRRLAGIPHEELSAAIARLRSIMPRELQPLLQDD 137 Query: 116 ANPVPSPSGALSFWRLIQ----AITGRRRVTLIAE------GRRCERLAPCRLLIHQQTW 165 VP R+++ AI R+ V L+ R R+ P ++ + Q+W Sbjct: 138 GAAVPPVPRNRHRERILEVLTRAIAARKSVDLVYHPASRPGERTQRRVDPYAVVPNAQSW 197 Query: 166 YLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDSLC-RLVEDPVFIQALPHFRFIQHSL 222 +L+ +F +D + + F + + + + + Sbjct: 198 HLIGWCHLRCAVRIFKVDRVEDVTVTDIRFTPDPEFDLNEFLTAGWGVTRGTDQPPEEIV 257 Query: 223 LTFVP 227 L F P Sbjct: 258 LRFTP 262 >UniRef50_B1I4N6 Regulatory protein, DeoR n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4N6_DESAP Length = 336 Score = 110 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 62/218 (28%), Gaps = 31/218 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRT 68 R+ I + + SV +L EF S RT+ RD L+ + GY R Sbjct: 19 RIYHIDALVRVRTFPSVARLVEEFETSRRTIERDLEYLRDQLNAPLKYDRTRGGYYYARD 78 Query: 69 AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSF 128 + + + A G L + E C+ P S Sbjct: 79 FQLPPFTLSEGEVLALFLGSKLLSQYRGTPFEKLITDAFEKICLAMPETVSLDFSLVNQT 138 Query: 129 WRLI-------------------QAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQT 164 +A+ R V L R+ P L HQ Sbjct: 139 ISFAVERPRGDEQHLLHLQELLGRALRERCTVDLDYYSASRDADTSRRVDPYHLRHHQGA 198 Query: 165 WYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLC 200 WYL+ + +F LD I ++ F + + Sbjct: 199 WYLIGHCHFRNEVRMFALDRITNLRVTDAHFTPDPAFD 236 >UniRef50_UPI0001B4CEC8 DeoR family transcriptional regulator n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4CEC8 Length = 336 Score = 109 bits (273), Expect = 6e-23, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 65/215 (30%), Gaps = 29/215 (13%) Query: 15 LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEY----QSGYCRLRTA 69 + I+ L L LA VSVRT+ RD + + G L Sbjct: 1 MLSIMLLLQTHGQLPAATLAERLEVSVRTVMRDVEALSAAGVPVYTVRGPHGGIALLPGF 60 Query: 70 GSEMQMVPDVLI----------FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119 +++ + GL R+++ AL +A + Sbjct: 61 RTDVTGLTADEARALFVLLSDRAYADLGLGSAIGSALRKVMAALPAAYRPDADLASRRIL 120 Query: 120 PSPSGALS---------FWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTW 165 P L +A+ RR+ L R + P L+ W Sbjct: 121 IDPVRWRGGPSRPAADGLGVLQRAVFTDRRLRLRYRHGEDGRVRSYTVDPYGLVHKAGVW 180 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 YLVA+H G +F D L E +R D L Sbjct: 181 YLVADHRGEPRLFRADRALSSGVLDEPVQRRDGLE 215 >UniRef50_Q0AKB6 Helix-turn-helix, type 11 domain protein n=1 Tax=Maricaulis maris MCS10 RepID=Q0AKB6_MARMM Length = 226 Score = 109 bits (273), Expect = 7e-23, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 62/213 (29%), Gaps = 24/213 (11%) Query: 10 RLAVRLSLIISRLVAG--ETLSVRKLAAEFGVSVRTLRRDFRERL---MYLDLEYQSGYC 64 R A RL I+ L ++ ++ F VS RT+ RD + +D E GY Sbjct: 4 RRAERLIRIVQALREAAPGAVTAHEMGHRFEVSERTIYRDIAHLIGSGAPIDGEAGVGYV 63 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP---- 120 + A G + D+ L +A P + Sbjct: 64 LRPGFDLPPLTFSFEQLDALALGARLVKATGDKDLASAANEALAKIEHALPESHRQRLRG 123 Query: 121 ---------SPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167 +F + AI +R++ + + + P L + W L Sbjct: 124 VPLFAAFLDDTVRPEAFGPVRNAIASKRKLRVRYQSLADDTTERVIRPLALTCFGRVWLL 183 Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198 A F D + + L E+F Sbjct: 184 SAWCELRNDFRHFRTDRVERLTVLAESFEDEPG 216 >UniRef50_C8X624 Helix-turn-helix type 11 domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X624_NAKMY Length = 335 Score = 109 bits (273), Expect = 7e-23, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 66/226 (29%), Gaps = 42/226 (18%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLD---LEYQSGYCRLR 67 + RL ++ + + + +LA GVS RT+R+D + GY L Sbjct: 5 SARLLSLLGLMQSRRRWAGPELAERLGVSDRTVRKDIDRLRSLGYPVDAVRGAGGYYELG 64 Query: 68 TAG-SEMQMVPDVLIFAH---------RSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117 ++ + A +G+ +L L + Sbjct: 65 VGASMPPLLLDEDEAVAVAVGLRAASGIAGIEETSVRALAKLDAVLPHHLQRQVAAVHEA 124 Query: 118 PVPSPS-----------GALSFWRLIQAITGRRRVTLIAEGR---------------RCE 151 V P A L AI R V Sbjct: 125 VVQGPENTGSNVADPVVDAGLLTELSAAIRDRVEVRFDYRADPDSALSAASGAASVVDRR 184 Query: 152 RLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRR 195 ++ P RL+ Q+ WYLVA G A + +D + L P FR Sbjct: 185 QVEPYRLVSWQRRWYLVARDARTGSWAPYRVDWLTLKTPGGRHFRP 230 >UniRef50_C4DCR3 Predicted transcriptional regulator, COG2378 n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DCR3_9ACTO Length = 320 Score = 109 bits (272), Expect = 7e-23, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 78/240 (32%), Gaps = 28/240 (11%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG----YCRLRT 68 R+ ++S L G + + +LA S RTLRRD + +E G Y + Sbjct: 7 RMLSLLSLLQGGRSWTGIELAERLSTSPRTLRRDIDRLRELGYPVETTRGPGGHYRLVAG 66 Query: 69 AGSEMQMVPDVLIFAHRSGL-----------AGLFPGLDRRLVNALLMCDESPCVIAPAN 117 + ++ D A GL A R++ L A Sbjct: 67 SAMPPLLLEDDEAVAIALGLRVASDGVMADVADTASSALRKVEQVLPKRLRQRVRAMHAA 126 Query: 118 PVPSPSGALSFWR-----LIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168 +P+ + +A +R+ R R+ P R ++ + WYL+ Sbjct: 127 TETTPARWPQVSARLLDIVGEASHRSQRLDFDYRDRGDARTRRRVEPYRQVLVNRRWYLL 186 Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226 A G +F +D + Q F + L AL + + H ++ F Sbjct: 187 AWDLDRGDWRIFRMDRMSDPQVGPGRFEARE-LPAESAASFVENALKRYPPMHHIVVDFH 245 >UniRef50_B8CYA6 Helix-turn-helix type 11 domain protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYA6_HALOH Length = 327 Score = 109 bits (272), Expect = 8e-23, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 85/254 (33%), Gaps = 34/254 (13%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAG-ETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL- 57 MT + R+ +I+ L +G + R LA FGVS RT+ RD + M++ + Sbjct: 1 MTVKRSK----LYRILKMINLLSSGVKRWRARDLAELFGVSPRTIYRDIQYMEQMHIPVI 56 Query: 58 --EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGL----AGLFPGLDR------RLVNALLM 105 E ++ Y + + + A ++P + +++N+L Sbjct: 57 KDEEKNTYAIMEDFYFKPPRMTREEAMALLLVAHAFEDEVYPYREELNNAVSKIINSLPS 116 Query: 106 CDES-------PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR-----CERL 153 + + V + + +I + V + ++ Sbjct: 117 SVKKVLLDLEDRILFHQGAVVDMTKHRDTINIINDSIASNQSVIINYYSLSSDMLRERKV 176 Query: 154 APCRLLIHQQTWYLVAEHEGHIAV--FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 P ++ + +YL+A V F +D I I+ + + D + + Sbjct: 177 DPYKIFVQDGAYYLIAYCHLRCNVLLFRVDRIRNIKVTSDKYIIPDDFD-VEKYMQNAWG 235 Query: 212 LPHFRFIQHSLLTF 225 + + +L F Sbjct: 236 VERGDKEERVVLLF 249 >UniRef50_C1YQ17 Predicted transcriptional regulator, COG2378 n=2 Tax=Actinobacteria (class) RepID=C1YQ17_NOCDA Length = 322 Score = 109 bits (272), Expect = 8e-23, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 70/215 (32%), Gaps = 29/215 (13%) Query: 12 AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL----MYLDLEYQSGYCRLR 67 + R+ ++S L G LAA VS R+LRRD L G+ RL Sbjct: 5 SARMLRLLSLLQTGRAWPGADLAAALEVSPRSLRRDIDRLRELGYAVESLRGPGGHYRLA 64 Query: 68 TAG-SEMQMVPDVLIFAHRSGLAGLFPGL------------DRRLVNALLMCDESPCVIA 114 ++ D + A GL + GL + +L + A Sbjct: 65 AGRAVPPLLLEDDEVVAAALGLRIVAAGLGGVEGVEESAERALARLGRVLPSRLARRAKA 124 Query: 115 PANPVPSPS------GALSFWRLIQAITGRRRVTLIAEGRRCERL----APCRLLIHQQT 164 A V L +A+ V ++ G L P RL++ + Sbjct: 125 MAAAVEPEQRVWPGVRTRVLTDLGEAVADGHWVRMLHRGGDGRELRRKADPYRLVLSGRR 184 Query: 165 WYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197 WYL A F LD I + P + F R + Sbjct: 185 WYLFAWDRERDDWRTFRLDRITGVTPTRAPFTRRE 219 >UniRef50_Q2YYI6 Probable transcriptional regulator n=1 Tax=Staphylococcus aureus RF122 RepID=Q2YYI6_STAAB Length = 309 Score = 109 bits (271), Expect = 1e-22, Method: Composition-based stats. Identities = 24/217 (11%), Positives = 60/217 (27%), Gaps = 26/217 (11%) Query: 23 VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCRLRTAGSEMQMVP 77 + +S +L+ VS RT+ RD + + G+ + + Sbjct: 14 NERKRISAHELSELMEVSQRTIYRDIEAINIAGIPVYSIPGVGGGFEIMENFKIDKNTFT 73 Query: 78 DVLIFAHRSGLAGLFPGLDRR------------LVNALLMCDESPC---VIAPANPVPSP 122 + + + L + L E+ + + Sbjct: 74 ENESASLLISNSNFPEKLKNNDFFNTNLKIKSLIPKDKLNSIETQVEQFQLDSNHWNELR 133 Query: 123 SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL--VAEHEGHIA 176 + + AI + + + + + P +L++ WY Sbjct: 134 NIDEQLIKFKNAIQNNQVLKIKYINHLGNKTEREVKPYQLILKAGHWYCYVYCYLRDDFR 193 Query: 177 VFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 + L+ + +Q L+ F + + L+ + L Sbjct: 194 LLKLNRVIHLQELESKFIKKMYIDPLLSTNRIFEKLK 230 >UniRef50_D2AWK7 DeoR family transcriptional regulator n=36 Tax=Actinomycetales RepID=D2AWK7_STRRD Length = 333 Score = 109 bits (271), Expect = 1e-22, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 57/203 (28%), Gaps = 28/203 (13%) Query: 23 VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCRLRTAGSEMQMVP 77 +LA VS RT+RRD + ++ GY + A ++ Sbjct: 23 QTPREWPGSELAERLRVSPRTIRRDIDRLRELGYPVQASMGAVGGYRLVAGAAMPPLLLD 82 Query: 78 DVLIFAHRSGLA---------------GLFPGLDRRLVNALLMC--DESPCVIAPANPVP 120 D A GL L++ L + L + + + Sbjct: 83 DEEAVAIAVGLRTAAGHPVDGIEEASVRALAKLEQVLPSRLRHRVGALNAATVPMPSGGG 142 Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--HEGH 174 L AI R R+ P RL+ + WYLVA Sbjct: 143 PTVDPEDLTVLAAAIANRERLRFGYRSGEGAESNRLAEPHRLVAAGRRWYLVAYDIDRDD 202 Query: 175 IAVFTLDEIHLIQPLQETFRRND 197 +F +D I +P + Sbjct: 203 WRIFRVDRIRQPRPTGARITPRE 225 >UniRef50_C6W4A4 Helix-turn-helix type 11 domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W4A4_DYAFD Length = 315 Score = 109 bits (271), Expect = 1e-22, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRLR 67 R++ I+ +L + + + + LA F +S+RT+ RD + + ++ GY + Sbjct: 3 RFDRITAILIQLQSRKIVKAQDLAERFEISLRTVYRDINSLAEAGVPIIGEAGVGYSIMD 62 Query: 68 TAGSEMQMVPDVLI--FAHRSGLAGLFPGLD--------RRLVNALLMCDESPCVIAPAN 117 M F L F L + A+L E V N Sbjct: 63 GYRLPPVMFTKEEARTFITAEKLMEKFTDLSTQSHYQSAMYKIKAVLRSTEKSMVENLEN 122 Query: 118 PVPSPSGALSFWR--------LIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQT 164 + S +F + L+++I+ R+ ++ + P + Sbjct: 123 HIEVRSRPRAFHQPDSNTLDVLLRSISERKIAKILYVALSASEPVERVIEPVGVYHENNY 182 Query: 165 WYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVF 208 WY +A F D I + F + + Sbjct: 183 WYTIAFCHLRNDYRNFRSDRILQCDITERPFVHKHGPLKDFMHDSW 228 >UniRef50_A3YDU1 Transcriptional regulator, (DeoR-family protein) n=1 Tax=Marinomonas sp. MED121 RepID=A3YDU1_9GAMM Length = 238 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 24/224 (10%) Query: 14 RLSLIISRLVAGE-TLSVRKLAAEFGVSVRTLRRDFRERLMYL-DLEYQSG-YCRL-RTA 69 RL II L + ++LA +F VSVRT+ RD E L ++ ++G L Sbjct: 8 RLFSIIQILRNARFPVKAQQLADKFEVSVRTIYRDIAELQNQLVPIQGEAGVGYILKPGY 67 Query: 70 GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL--------------LMCDESPCVIAP 115 M+ + A G + D+ L + L + Sbjct: 68 EMPPLMLTANELEAVALGAHWVSQRGDKYLSQSANSLLEKIKDVVPEHLQSVILDTNLVS 127 Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEH 171 AN + +++ + +AI + ++ + + + + P + +VA Sbjct: 128 ANYAQAVEDSINMDDVREAIRQQSKLFIAYKDVKENISHRIIWPIMVAYFDSVRLVVAWC 187 Query: 172 --EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 F D I+ ++ L E++ + +L LP Sbjct: 188 ESRQDFRHFRTDRINKVEVLDESYPKPRQTLKLEWQKKQNITLP 231 >UniRef50_A0R9T5 Transcriptional regulator, DeoR family n=74 Tax=Bacillaceae RepID=A0R9T5_BACAH Length = 322 Score = 108 bits (270), Expect = 1e-22, Method: Composition-based stats. Identities = 47/251 (18%), Positives = 86/251 (34%), Gaps = 31/251 (12%) Query: 1 MTQAERR-HDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MY 54 M + ++ H A RL I+ A +T + +++A EF +SVRT+ R + +Y Sbjct: 1 MLKRKKVIHLSKAKRLLDILIFASAKKTFTAQEIADEFNISVRTVHRYIVDLSDMGLPIY 60 Query: 55 LDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-----------RRLVNAL 103 + GY L + + + L D +L ++L Sbjct: 61 AEQGRNGGYKVLTNRVIPPILFTEEEAVSIFFAFQSLSYYRDLPFNTEINSVIHKLYSSL 120 Query: 104 LMCDESPCVIAPA-----NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAP 155 ++ + NP + L AI + + E + + + + P Sbjct: 121 QHDAKTKVEKIRSYIAFWNPKRTIDTPHLNEVLTAAIENKN-LHFQYESKSGIKTKHVHP 179 Query: 156 CRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213 + H WYL + + ++ +D I I +E D+ L E + Sbjct: 180 IGVYAHDGLWYLPSYDFSRKKVLLYRVDRILSILSTEEN---EDTFMNLEEWFASNSNVI 236 Query: 214 HFRFIQHSLLT 224 H H LLT Sbjct: 237 HSPTQLHVLLT 247 >UniRef50_Q222Z2 Helix-turn-helix, type 11 n=3 Tax=Proteobacteria RepID=Q222Z2_RHOFD Length = 231 Score = 108 bits (269), Expect = 2e-22, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 24/214 (11%) Query: 11 LAVRLSLIISRLVAGE-TLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRL-- 66 A RL + + L + ++ +AA VSVRT+ RD + ++ ++G L Sbjct: 3 KAERLFHLYALLRSRRTAMTAEAIAAVLEVSVRTVYRDVQALSQSGAPIDGEAGVGYLLR 62 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA- 125 M + A G + D L + ++ I + + Sbjct: 63 PGFDLPPLMFTPEELLALMVGARMVQAFTDPDLARSARQSEQKIRSILTDSLKLNAERQP 122 Query: 126 -------------LSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLV 168 L A GR++V + + R L P ++ W L+ Sbjct: 123 YRIPILDSDDGLREVHRTLRLACEGRKKVRAVYCDEQQQRTERVLWPLGIIGWTGRWTLL 182 Query: 169 AEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200 A E F D + L E F + Sbjct: 183 AWCETRSDYRNFRFDRFDAVACLDERFPPRPDVN 216 >UniRef50_Q1JX03 Helix-turn-helix, type 11 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JX03_DESAC Length = 319 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 66/215 (30%), Gaps = 28/215 (13%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER--LMYLDLEY---QSGYCR 65 R ++ G + KLA +F +S RT +RD + LEY + GY Sbjct: 4 RIERFFWFDHQIRQGNYPNAPKLARQFEISERTAKRDIDALTNQIGAPLEYNATRRGYRY 63 Query: 66 LR--------TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALL--------MCDES 109 + M +L SG A G L +L + Sbjct: 64 SDASYSLTWTRFSHQEIMAMLILRRMLDSGGASPLSGELNALCEKMLTNLEQCGIDREHL 123 Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQT 164 + P F +L +A+ RR+V + + P L + + Sbjct: 124 DHCFSANWSHYIPVDETIFQQLGEAVLTRRKVYFSYQNPTRPQASSRMVHPYHLQHYSGS 183 Query: 165 WYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRND 197 WYL++ E F L I + F D Sbjct: 184 WYLISWCEEQQDWRTFQLSRISQMHLTDTPFDYRD 218 >UniRef50_C1SHC7 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHC7_9BACT Length = 306 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 78/223 (34%), Gaps = 15/223 (6%) Query: 16 SLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL----EYQSGYCRLRTAGS 71 +I L ++ +A E GVS+RT +R + + E Y Sbjct: 8 LKLIKLLNENRYVTSTMVADELGVSLRTAQRYLSDMSYLPGVCYSDEKHQWYLTEHYGLH 67 Query: 72 EMQMVPDVLIFAHRSG------LAGLFPGLDRRLVNALLMCDESPCVI--APANPVPSPS 123 E + D L L + G+ +L ++ +I A+ V Sbjct: 68 ESYLKQDELAVLSGLFDYAENILQDEYSGMLTKLRKKIISASNRQNIIQFMKADSVGFDK 127 Query: 124 GALSFWRLIQAITGRRRVTLIA-EGRRCERLAPCRLLIHQQTWYLVAEHEGH-IAVFTLD 181 A +F L I ++ +T + + + P RL+ + WYL A ++ + F LD Sbjct: 128 VAENFTLLENYILKKQVITFDYLKNDKTYEVKPYRLIYNDGFWYLAALNKQDSLRKFGLD 187 Query: 182 EIHLIQPLQETFRRNDS-LCRLVEDPVFIQALPHFRFIQHSLL 223 + I+ ETF + + I PH + LL Sbjct: 188 LMENIKSSNETFEIATDVIDAEISQANNIFFDPHKKIKVKCLL 230 >UniRef50_C0YNW3 Transcriptional regulator, DeoR family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YNW3_9FLAO Length = 317 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 71/216 (32%), Gaps = 27/216 (12%) Query: 5 ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ--S 61 + + R++ I+++L + + + LA +F VS+RT+ RD + + + + + Sbjct: 2 NDHYLKKLDRVTAILTQLQSKPVVRAQDLAEKFDVSIRTIYRDVKTLENAGIPIVGEAGN 61 Query: 62 GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA------------------L 103 GY + M + + + + + L N L Sbjct: 62 GYSLMEGYKLPPIMFTKEEVLSFITAEKLMQKFSHQSLGNHYQAAMEKVRSVLKYSDKNL 121 Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLL 159 + E + + S ++++I + ++ + + + + Sbjct: 122 IKNIEKQIDVFSFHTDSGDSLKNVIPIILESIAEKTQLIIKYQTVDGRVNHRTIETVGMF 181 Query: 160 IHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETF 193 WY++A F +D I I Q F Sbjct: 182 FEFNFWYIMAFCTLRKDFRQFRIDRILEISKTQNPF 217 >UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PXP5_PROST Length = 146 Score = 107 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60 M R++DR+A+RLS +I+RLVAGE L + LA EF V RTL+RD RERL YL +EY+ Sbjct: 1 MLPTNRKYDRMAMRLSALITRLVAGENLVLTDLACEFNVPARTLQRDLRERLAYLGVEYR 60 Query: 61 SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-LDRRLVNALLMCDESPCVIAPANPV 119 RL + DVL F + G+ LFPG R L L +P +I Sbjct: 61 KRVYRLPLNTLKAYRDKDVLTFVKQMGMTRLFPGLDSRLLNLLLSQRQHAPYLIWHHAHR 120 Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA 145 S A F++L+ AI G + +TL Sbjct: 121 TSAEHAEHFYQLVYAIIGYQHITLPY 146 >UniRef50_Q6ZEN3 Sll5097 protein n=5 Tax=Chroococcales RepID=Q6ZEN3_SYNY3 Length = 334 Score = 106 bits (264), Expect = 7e-22, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 70/262 (26%), Gaps = 32/262 (12%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM--YLDLE 58 MT R RL I + + + + +A + V+ RT+R DF ++ Sbjct: 1 MTAQNVLSPRQLERLLAIDEYIRSPIRYTAKVIAEKLSVAERTIRLDFAFLRDRFNAPIQ 60 Query: 59 ---YQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115 + Y T + +FA G L L + P Sbjct: 61 FNQSKGYYYSDNTWRLPTIPLTQGELFALTLGAKALEAYSGTAYEAELKSSIKQLATRLP 120 Query: 116 ANPVPSPS------------------GALSFWRLIQAITGRRRVTLIAE-----GRRCER 152 + + L +A R++ + Sbjct: 121 EKVWVNLEKLVDEKINFRPGAELLNLDPDIYQILHEAWKSSRQLWIRYYTAGRNEESERI 180 Query: 153 LAPCRL-LIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209 + P L + YLVA F LD I + L E F N + + Sbjct: 181 VDPYYLDIYRGSNPYLVAFCHNRQAFREFRLDRIREYRILDEYFEPNPNFDWK-KYSKNA 239 Query: 210 QALPHFRFIQHSLLTFVPADSP 231 + + ++ F +P Sbjct: 240 FQIEKGNCLHEVVIDFTCKVAP 261 >UniRef50_D2PY48 Helix-turn-helix type 11 domain protein n=6 Tax=Actinomycetales RepID=D2PY48_9ACTO Length = 331 Score = 105 bits (263), Expect = 8e-22, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 66/238 (27%), Gaps = 31/238 (13%) Query: 23 VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG----YCRLRTAGSEMQMVP 77 + +LA+ VS RT+R D + ++ G Y A ++ Sbjct: 20 QTRPAWTGAELASRLNVSTRTIRNDVDRLRELGYPVDAVRGPAGHYQLGVGAKLPPLLLD 79 Query: 78 DVLIF--------------------AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117 D + L + P RR VNA+ +N Sbjct: 80 DEEAVAVAVGLRTGAGVSGMEESSGRALAKLEQVLPHRLRRQVNAIHTTLSKGPDNTGSN 139 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCE-----RLAPCRLLIHQQTWYLVAEHE 172 + AI + + + P RL+ Q+ WYLVA E Sbjct: 140 VQDPEVDPAVVTTIAAAIRDEHYLRFEYAVPGTDPGFPILVEPYRLVSWQRYWYLVARDE 199 Query: 173 -GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPAD 229 G + +D + L +R D V + + F A+ Sbjct: 200 SGQWRTYRVDWMDLRMATGRRYRPRPMPDEDYTDFVLRDVATTGWKVHARITVFASAE 257 >UniRef50_C2ZF99 Putative uncharacterized protein n=4 Tax=Bacillus cereus RepID=C2ZF99_BACCE Length = 312 Score = 105 bits (263), Expect = 8e-22, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 65/206 (31%), Gaps = 25/206 (12%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYC 64 + RL+ ++ + +T +++ L EF +S RT RD ++ + GY Sbjct: 2 KKVERLNQMLRFINQKQTFTLKDLMDEFQISKRTALRDIASLEEMGVPLFAEYGRYGGYR 61 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGLAGL-----------FPGLDRRLVNALLMCDESPCV- 112 +++ + +FA + L ++++ ++++ Sbjct: 62 LIKSMTLPPISFTNHEVFALYFAMQALSSFVSIPFQISLRSINKKFLDSVSSKQREQIEN 121 Query: 113 ---IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWY 166 ++ A R +T+ + R+ P + + WY Sbjct: 122 LQKRVSFFHSEQAHECGYLEEILLAAVQNRALTINYVTPKQTTMRRIQPISIYAMKGYWY 181 Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQ 190 A VF D I + + Sbjct: 182 CQAYDLDKSAYRVFRCDCIRSSEIVD 207 >UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibrio shilonii AK1 RepID=A6D7H7_9VIBR Length = 255 Score = 105 bits (263), Expect = 9e-22, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 12/170 (7%) Query: 34 AAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFP 93 E+GVS +TLRRDF +RL+ + + +L + + SGL+ L P Sbjct: 1 MEEYGVSEKTLRRDFNQRLINTPIMKTAHGYQLENQLNSSYVTTK--RILDDSGLSSLLP 58 Query: 94 GLDRRLVNALLMCDESPCVIAPANPVPSPSGALS--FWRLIQAITGRRRVTLIAEGRRCE 151 SP I NP + F ++ AIT R + L +GR Sbjct: 59 PKH--------NISTSPSTILFKNPRIEDTHKFDGVFTQINSAITSRTIIDLTYQGRLIT 110 Query: 152 RLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201 ++ P RL+ + WYL G + + L ++ I ++ + + + Sbjct: 111 QVHPYRLVNDRGIWYLSGVASGQLYSYRLAKVSQIHTAEDKYYPDPKVLE 160 >UniRef50_D0LB20 Helix-turn-helix type 11 domain protein n=5 Tax=Corynebacterineae RepID=D0LB20_GORB4 Length = 324 Score = 105 bits (263), Expect = 9e-22, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 60/202 (29%), Gaps = 27/202 (13%) Query: 23 VAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRTAGSEMQMVP 77 S +LA ++ RT+RRD + + + GY A ++ Sbjct: 16 QMRREWSGNELADRLNITTRTVRRDVDKLRELGYPVDATVGVGGGYRLGAGAEMPPLLLD 75 Query: 78 DVLIFAHRSGLAGL-------FPGLDRRLVNALLM------CDESPCVIAPANPVPSPSG 124 D + A GL + + L + A P P+ Sbjct: 76 DQEVLAVALGLDAVTTGAVADMAEASAGALTKLRQVMPSRLRHRLDALRVEAVPHQQPAS 135 Query: 125 ALSFWRLIQ---AITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGHI 175 A+S L + A R+ + P RL+ + WYLVA Sbjct: 136 AVSADVLTEIATACHRTERLRFDYRRPNRDESRREVEPYRLVRNGYRWYLVAWDLTREDW 195 Query: 176 AVFTLDEIHLIQPLQETFRRND 197 F +D + P F ++ Sbjct: 196 RSFRVDRMTPKTPTGPRFTPHE 217 >UniRef50_B3QT91 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QT91_CHLT3 Length = 327 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 71/259 (27%), Gaps = 32/259 (12%) Query: 1 MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL----- 55 M + R R+ I +L A + + R LA EF VS ++++RD + L Sbjct: 1 MKHSVSRAST--YRMKRIDEKLRAKKYPNCRTLADEFEVSEKSVQRDLEHMRVLLGAPIA 58 Query: 56 -DLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIA 114 D + Y + A L + L Sbjct: 59 YDRSKRGFYYTEPNYFLPSVYLKHGEAKAFGVLQRILKQYEETPYYKELESAMHRVFENL 118 Query: 115 PA----------------NPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERL 153 P P P F ++ +A R + + + Sbjct: 119 PGKSDPFSEEEIYSFEQPPPPSRPLDREHFQQIDRAANRREVIDITYYAASRNETSRRGV 178 Query: 154 APCRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211 P L Q TWYL+A + F L+ I I+ F + Sbjct: 179 HPYHLHFAQGTWYLIAHCELRRELRFFALNRISEIRETSRPFAIPEDFSLNNYLAKTFD- 237 Query: 212 LPHFRFIQHSLLTFVPADS 230 + H + L F P + Sbjct: 238 MTHDETLYDIELRFSPYQA 256 >UniRef50_A6WF08 Helix-turn-helix type 11 domain protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WF08_KINRD Length = 321 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 24/209 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDL----EYQSGYCR 65 A RL ++ L A ++ L VS RT+ RD + + G Sbjct: 2 RADRLLSLLFLLQAHGRMTAPDLGRRLEVSTRTVLRDVEALSAAGVPVWTERGRGGGISL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLF-------PGLDRRLVNALLMCDESPC------- 111 + +++ A SG AG+ R+L+ A +P Sbjct: 62 MPNWRTDVSGFTAGEARALFSGAAGVADPQRPAWESAVRKLLAATPAEQRAPFQRAAERI 121 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWY 166 ++ PA + L +A+ RRV L L P L+ WY Sbjct: 122 LVEPAGWRSREANPPHLAALQEAVFSARRVRLRYRSAGATRTSTRTLDPIGLVAKGGVWY 181 Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRR 195 LVA +F ++ + + L + Sbjct: 182 LVAATRDGDRLFRVERVVGLDVLDDPVPP 210 >UniRef50_A2U2S8 Transcriptional regulator n=1 Tax=Polaribacter sp. MED152 RepID=A2U2S8_9FLAO Length = 227 Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 71/214 (33%), Gaps = 25/214 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG------- 62 R++ I+ +L + ++ +++A F +S+RT+ RD + + + ++G Sbjct: 3 RLTRVTAILIQLQSKRIVTAKEIAQRFEISLRTVYRDIKTLQDAGIPIGSENGVGYFIVD 62 Query: 63 YCRLRTAGSEMQMVPDVLIFAHRSG----------LAGLFPGLDRRLVNALLMCDESPCV 112 R+ + ++I L + + L N E Sbjct: 63 GYRIPPIALTEEEANALIIVEELMKKQGDKSIDKNLNSIIIKVKATLKNFQKDNIELLSS 122 Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYL 167 + + + + + ++I ++ + + + P + +W + Sbjct: 123 RTFSLNNQNYTESSWLSEIQKSILRKQILKINYHSISKEQTTIRDIEPLSVYFTNTSWVV 182 Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199 +A + F LD+I + F + S Sbjct: 183 IAFCHLRNGLREFRLDKIIKLTNTLMPFSIDISF 216 >UniRef50_C8QWX3 Transcriptional regulator-like protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWX3_9DELT Length = 334 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 31/242 (12%) Query: 20 SRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGY-CRLRTAGSEM 73 ++ + LAAEFG+S RT R + D + + GY Sbjct: 15 QQIRRERFPNAPALAAEFGISERTAGRAIEAMRVEFDAPLHYVHARRGYTYLDDQFQLPP 74 Query: 74 QMVPDVLIFAHRSG-----------LAGLFPGLDRRLVNAL----LMCDESPCVIAPANP 118 + IFA ++ L+R+L+ + L ++ + + P Sbjct: 75 FWLSQEEIFAVLLARNLLSCCADGLISQAIASLNRKLLQQIADHGLAAEKFDQLFSATWP 134 Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIA-------EGRRCERLAPCRLLIHQQTWYLVAEH 171 +P+ A F +A+ +R + P L +Q W L+A Sbjct: 135 GYAPAPAEVFRPATKALLEQRLFAFDYSSPLDQNGNYHSRLVEPHHLQHYQGNWVLLARC 194 Query: 172 EGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPAD 229 F L + Q ETF + + + R + +++ F PA Sbjct: 195 RKRCDWRKFVLSRMQNPQISTETFTPHPRREW-LPHLEGAYGIFQGRSPETAIIRFTPAR 253 Query: 230 SP 231 +P Sbjct: 254 AP 255 >UniRef50_B7HA30 Hypothetical DNA-binding protein n=2 Tax=Bacillus RepID=B7HA30_BACC4 Length = 314 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 61/200 (30%), Gaps = 25/200 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65 R+ I+ L +++ ++LA GVS RT+ RD +E +Y + G+ Sbjct: 3 KTKRIIRIMLALNNNNSITAKELAKSEGVSERTILRDIQELSEIYFPVYSERGRNGGFST 62 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAPANP 118 L+ + I A + + F ++N L A N Sbjct: 63 LKNKMIPPIWFSEDEIIALFFAIDAMQYVGATPFSTSYNVILNKLFNMIPQETSDAIENT 122 Query: 119 VPSP--------SGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYL 167 L A + V ++ E + L ++ WY Sbjct: 123 RDKILMWQPNIKVDKRVLRNLYDASVEEKTVNILYETTEDEIYREIELMGLYVYNGYWYC 182 Query: 168 VAEHEGH--IAVFTLDEIHL 185 A I +F +D I Sbjct: 183 PAYCRMRRGIRLFRVDRIKK 202 >UniRef50_A8W027 Regulatory protein GntR, HTH n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W027_9BACI Length = 328 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 64/225 (28%), Gaps = 28/225 (12%) Query: 13 VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM---YLDLEYQSGYCRLRTA 69 RL I+ L +T++ +LA + RT+ RD + + + GY L Sbjct: 10 ERLFYIMQFLSNHDTVNAGELADHCQATKRTIYRDIHFLQSQGHEIQTQGREGYKLLIPN 69 Query: 70 G--SEMQMVPDVLIFAHRSGLAGLFPGLDR-----------RLVNALLMCDESPCV---I 113 + L L+ D +++ +P I Sbjct: 70 MQVRSKLTEDEWLSLTLYPLLSSGIASSDHPYHRHYKTGLEKVMRLASGGAPNPAFAERI 129 Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTWYLV 168 A +I AI+ R + + RL P L+ + YLV Sbjct: 130 RLHARTQDTFQAKVMPAIITAISDNRCIDVRYYAMHRSEWSERRLEPYYLVPREGHLYLV 189 Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETFRRNDSL--CRLVEDPVFI 209 A I VF L+ + F ++ I Sbjct: 190 AFCRLRNDIRVFRLNRFEDVHVTDAPFTIPQDFSIDAFLKKRWSI 234 >UniRef50_B2SX79 Helix-turn-helix type 11 domain protein n=41 Tax=Burkholderia RepID=B2SX79_BURPP Length = 246 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 23/205 (11%) Query: 10 RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRL 66 R A RL I L + ++LA +S+RT+ RD R+ L + +E ++ GY Sbjct: 21 RRADRLFQIAELLRGRRLTTAQQLADWLHISLRTVYRDVRDLQLSGVPIEGEAGIGYRLS 80 Query: 67 RTAGSEMQMVPDVLIFAHRSGLAGLFP-----------GLDRRLVNALLMCDES---PCV 112 RTA + A +G L G ++ +A+ + Sbjct: 81 RTASLPPLTFTADELAALAAGARMLESWGGAGFAGGARGALAKIASAMPADKRATLERLA 140 Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168 + + + L +AI R+ V R+ P L W L Sbjct: 141 VFAPSFHIKGDFSAQLDALHRAIDTRQVVRFAYVDVNGAASERRVWPLALAYWGARWTLG 200 Query: 169 AEH--EGHIAVFTLDEIHLIQPLQE 191 A G F L++I +Q L++ Sbjct: 201 AWCELRGDFRNFGLEKIQNLQVLEQ 225 >UniRef50_Q3JYW1 Putative uncharacterized protein n=2 Tax=Streptococcus agalactiae RepID=Q3JYW1_STRA1 Length = 316 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 72/238 (30%), Gaps = 28/238 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65 + RL I + + + +LA +F VS RT++RD E + Y ++ GY Sbjct: 3 KSSRLIDIWLYINNHKKFTTTELATKFNVSTRTIQRDIDELSLLGVPFYSEVGRNGGYTM 62 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125 L + I + + D + + + + S Sbjct: 63 LHQEVLPPISFSEDEIISIILTYKSMIQYKDFPYQFEIESVIAKLLSNSSTSLLERLSQV 122 Query: 126 LSFWRLI---------------QAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYL 167 + L A + V ++ E + + L P + WY Sbjct: 123 EKCFYLKIPVRNEKTPYLKEVFNASIKNKCVEVMYDSLENKNKKLLFPIGIYSDNGYWYF 182 Query: 168 VAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223 A + + +D I + +T + + + RL + F + + + Sbjct: 183 CAIDNHLKEVRTYRVDRIKSL-VTNDTIQCDKN--RLTIEDAFANQVQSNEGNKQLVR 237 >UniRef50_A9WUI5 Transcriptional regulator n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WUI5_RENSM Length = 313 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 73/233 (31%), Gaps = 39/233 (16%) Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCRLRTAGSE 72 ++S L LA + VS+RTLRRD + +E + GY A Sbjct: 1 MLSLLQHHRFWPGNDLAEKLEVSLRTLRRDVERLRELGYPVEARRGTDGGYQLAAGASLP 60 Query: 73 MQMVPDVLIFAHRSGL----AGLFPGLDRRLVNALLMCDESPCVIAPANPV--------- 119 +V D A GL G G++ ++AL + Sbjct: 61 PLVVDDEEAVALTIGLRLAAQGAINGIEEASISALAKVIQVMPARLRRRVEALQLATVPS 120 Query: 120 ----PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH 171 A + QA R+ + + P RL+ Q WYLVA Sbjct: 121 GSAPGPVVDATVLTTIAQACRDEERLDFSYTAHNGEQTERHVEPRRLVAVGQRWYLVAYD 180 Query: 172 --EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222 F LD + + E FR I AL F+Q+SL Sbjct: 181 LTRHDWLSFRLDRLREPKNTAERFRSRK-----------IPALNAAEFVQNSL 222 >UniRef50_Q1IHV4 Transcriptional regulator, DeoR family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHV4_ACIBL Length = 314 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 65/215 (30%), Gaps = 25/215 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65 A RL ++ L A ++ R LA VS RT+ RD Y Q G+ Sbjct: 2 RADRLLSMLLLLQAHGRMTGRDLAERLEVSERTVHRDMESLSASGVPVYAVRGAQGGWQL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSG---------LAGLFPGLDRRLVNALLMCDESPCVIAPA 116 +++ + + + LA +L+ AL Sbjct: 62 EENWRTQVPGLDEAELRGLMMAQPRVVGDAKLASAAQRALEKLMAALPASLREQAASIRE 121 Query: 117 NPVPSPSGALSFWR-------LIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165 G + A+ R++T++ R + P ++ W Sbjct: 122 RLYVDTGGWRPHLENLAMLPLVQDAVARDRKLTMVYCKPNGERSERTVDPLGVVAKGSAW 181 Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200 YLVA + F + I PL + +R Sbjct: 182 YLVANTSAGLRTFRVSRIEQATPLVKASKRPRDFN 216 >UniRef50_C8XGJ6 Helix-turn-helix type 11 domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGJ6_NAKMY Length = 333 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 63/216 (29%), Gaps = 31/216 (14%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRLRT---- 68 R ++ L + + +LA F V RT+RR + +E + G Sbjct: 6 RTLEVLELLQSAGVRTATELAERFDVDERTIRRTVDRLRDLGIPIEARPGRYGGYRIAAG 65 Query: 69 AGSEMQMVPDVLIFAHRSGLAGL------------------FPGLDRRL--VNALLMCDE 108 M+ + A +GL + + R L A Sbjct: 66 WRMPPLMLDENETVAVLAGLLAVPGSGTVPTGHTATATATAIAKIRRSLPARLAARADAL 125 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQT 164 + + + A+ RR +TL L P L+ H+ Sbjct: 126 LAAAVVGSPDAAPATDPEILLTAADAVRMRRPLTLDYRSGEDVLTRRTLQPHDLVAHRGR 185 Query: 165 WYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198 WYLV F LD + ++PL TF Sbjct: 186 WYLVGLDSSSRQRRTFRLDRVRALRPLSGTFPAPAE 221 >UniRef50_UPI000051035F putative DeoR family transcriptional regulator n=1 Tax=Brevibacterium linens BL2 RepID=UPI000051035F Length = 314 Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 18/208 (8%) Query: 11 LAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYC 64 A RL I L A ++ LA V+ RT+ RD + M + + + G Sbjct: 4 KAARLVSEIVILSARSVPITAANLAERLEVTERTVYRDLGDLSRMGVPVVTEAGPGGGIS 63 Query: 65 RLRTAGSEMQMVPDVL--------IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116 L T S + + A G A ++++ S ++ Sbjct: 64 LLGTWTSPLSGMTRDELDSVLIGGAAAADLGFARELATAREKILSETESVFSSNVLVDGP 123 Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAE-HE 172 + + + ++ A+ R + G R P L++ WYL+A+ Sbjct: 124 DWFMTHERPEALSVIVTALRSHRGLQFRYAARTGSRLRTAIPLGLVVKAGRWYLIAQPPG 183 Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLC 200 G + + + I R Sbjct: 184 GRPRTYRVSRMTAIALRYVAVSRPVEFH 211 >UniRef50_A7GU32 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillus cereus group RepID=A7GU32_BACCN Length = 303 Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 28/223 (12%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDL----EYQSGYCR 65 R+ I+ L+ + +S +LA F VS RT+ RD + + G+ Sbjct: 2 KTERMLSILIYLLQKDIISAEELANTFEVSKRTIYRDIDALSAIGIPIISYLGKNGGFTL 61 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLA-----------GLFPGLDRRLVNALLMCDESPCVIA 114 + + + GL + L + V Sbjct: 62 IDNYRLDKFTFSEEEKRFLLEGLTLKSELFDDEQLSILQKKIEVLKETKRDHTSNMTVSF 121 Query: 115 PANPVPSPSG--ALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLV 168 + +++ I +++ + + + P +L +WYL Sbjct: 122 STLHRETIEEETKQKVKKVLVMIEKEQKLQISYVSQTGHLSKRIIQPLKLNFMNGSWYLE 181 Query: 169 AEH--EGHIAVFTLDEIHLIQPLQET----FRRNDSLCRLVED 205 A + VF L I + + + + R + ++ Sbjct: 182 AVCVLRKALRVFKLTRIRRMDIIDDNTEIVYDRKPEFIKERKE 224 >UniRef50_D0MJ72 Helix-turn-helix type 11 domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJ72_RHOM4 Length = 347 Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 64/216 (29%), Gaps = 29/216 (13%) Query: 14 RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL---EYQSGYCRLRTA 69 RL ++ L +G L+ + A F VS RT+ D + + + + Y Sbjct: 18 RLQRLLEWLRSGRPLTTTRAARHFEVSRRTIASDIEYLRRLGVPVAYDRRRQTYYLEEPF 77 Query: 70 G--SEMQMVPDVLIFAHRSG-----------LAGLFPGLDRRLVNALLMCDESPC----- 111 + + + A A L RL L Sbjct: 78 TENLPLIALDRAELAAFLVARLALEAFGDTPDAALLEAAVERLAAHLPEPIHVDPDTLTR 137 Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWY 166 + + L +A +R V L + P ++ HQ WY Sbjct: 138 TLRFEMGPRPRTPLRYLDELRRAAAEQRVVHLHYYANYADALTERDVEPYAIVAHQSRWY 197 Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200 LVA + F +D I ++ +ETF R Sbjct: 198 LVAYCRLRQAMRDFRIDRIQHLKLREETFARRPDFD 233 >UniRef50_D1BRS2 Helix-turn-helix type 11 domain protein n=2 Tax=Micrococcineae RepID=D1BRS2_XYLCX Length = 320 Score = 104 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 73/241 (30%), Gaps = 32/241 (13%) Query: 23 VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG----YCRLRTAGSEMQMVP 77 + S ++LA GV+ RT+R D + + G Y A ++ Sbjct: 16 QSRADWSGQELAQRLGVTDRTVRNDVARLRELGYPVHTTRGPGGRYRLGAGAVLPPLLLD 75 Query: 78 DVLIFAHRSGLA--------------------GLFPGLDRRLVNALLMCDESPCVIAPAN 117 D A GL + P RR + AL + V +N Sbjct: 76 DEEAVAIAVGLRATTGMKAFEESGGRALTKLEQVMPQRIRRRIEALRSATSAGPVNTDSN 135 Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEH--EGHI 175 + AI RR + E R + P L++ Q+ WYLV G Sbjct: 136 VEDPVVEPELLTEISAAIRDRRTLRCDYEQRTV-EVEPYHLVVWQRRWYLVCRDVASGRW 194 Query: 176 AVFTLDEIHLIQPLQETFR---RNDSLCRLVEDPVFIQALP-HFRFIQHSLLTFVPADSP 231 +D I L P F + + V V H R + + V A Sbjct: 195 EPLRVDWIRLRTPGGRRFSPAPPPEDVTEFVVREVAGAGWAVHARIVVDAPPDEVAARIN 254 Query: 232 P 232 P Sbjct: 255 P 255 >UniRef50_B2A7V3 Helix-turn-helix type 11 domain protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7V3_NATTJ Length = 312 Score = 104 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 23/227 (10%) Query: 6 RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYC 64 + DRL R+ + ++ ++ +LA EF VSVRT+RRD L ++ G Sbjct: 1 MKLDRLV-RVMSVAEKIRKEPGITYNELAQEFDVSVRTVRRDVSVLEQAGLPVQNYHGLR 59 Query: 65 RLRTAGSEMQMVPDVLIFAHRSGL-------------AGLFPGLDRRLVNALLMCDESPC 111 + + + L+ L + L ++ + Sbjct: 60 FMSDVELPKVQFEPDEVILLLLMVNFISRYEIDNQIPNSLYEKLKQYLPEKMMDKYQHIQ 119 Query: 112 VIAPANPVPSPSGALSF-WRLIQAITGRRRVTLIAEGRRC-----ERLAPCRLLIHQQTW 165 +P + + R I + RV + + + P + ++ W Sbjct: 120 KSVLIHPHDNEQDGRNIVRRFKDIIECKNRVKIYYQSHSSKQENWRMVDPYGVFFKKRAW 179 Query: 166 YLVAEHEG--HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210 Y+V I +F + I I+ L + + + + Sbjct: 180 YMVGYCHRHLDIRIFKCNRIKKIKSLPDMYDIPNDFDLEEFLSDSFE 226 >UniRef50_A0NPP9 Transcriptional regulator, (DeoR-family) protein n=2 Tax=Rhodobacteraceae RepID=A0NPP9_9RHOB Length = 221 Score = 104 bits (258), Expect = 4e-21, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 57/219 (26%), Gaps = 24/219 (10%) Query: 11 LAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG-YCRLR 67 +RL I+ L + + + LA GV+ RT+ RD + + G L Sbjct: 2 RTIRLFSILDALRSRRSAVPAAMLADMLGVTERTIYRDMATLKAMGAPIRGEGGVGYILE 61 Query: 68 TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA-- 125 M D + ++ + S + Sbjct: 62 RGYFLPPMQFDPNELDVILLGIRMVKARGDAVMRETAERVLGKLGAVLSEGERSLNRPLL 121 Query: 126 -----------LSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE 170 + L AI RR+V L E P L + W L A Sbjct: 122 AVGKASSALGQDALSPLRDAIRKRRKVQLSYADMQERVSDRLTRPLGLTAFESVWVLTAW 181 Query: 171 H--EGHIAVFTLDEIHLIQPLQETF--RRNDSLCRLVED 205 G F LD I + + F ++ Sbjct: 182 CEMRGGFRNFRLDRIRSYKVTETRFPMEPGKEFQDYLKT 220 >UniRef50_B6R9W7 Transcriptional regulator n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R9W7_9RHOB Length = 268 Score = 104 bits (258), Expect = 4e-21, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 68/211 (32%), Gaps = 26/211 (12%) Query: 10 RLAVRLSLIISRLVA-GETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCR 65 R A RL I+ L ++ +A E VSVRTL RD + + ++ GY Sbjct: 22 RRADRLLQIVQLLRRHRGPVTGDVMAEELEVSVRTLYRDIVSLQSTGVPIRGEAGVGYVL 81 Query: 66 LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS---- 121 M + A GL + D +L+ + Sbjct: 82 DEGYDLPPLMFNSDELEAVMMGLRHVQVRGDEQLIRTASDVIAKIAAVLSPEARDEFIEA 141 Query: 122 ------------PSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165 P+ + + QAI G+ ++ L E + P L Q+ Sbjct: 142 PLYAPDFGVEPIPTARIELKDVRQAIRGQHKLRLTYEDAQGEMSERLIWPLSLTFFAQSR 201 Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFR 194 +VA F D + ++ L+E +R Sbjct: 202 MIVAWCELRKDFRAFRTDRVTHMEVLEERYR 232 >UniRef50_Q82JJ5 Putative DeoR-family transcriptional regulator n=2 Tax=Streptomyces RepID=Q82JJ5_STRAW Length = 318 Score = 104 bits (258), Expect = 4e-21, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 67/231 (29%), Gaps = 27/231 (11%) Query: 11 LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65 + RL I+ L + +LA VSVRT+ RD Y + G Sbjct: 2 KSDRLLSILLLLQTRGRVPAHELATRLEVSVRTIYRDIEALSASGVPVYAERGRHGGIEL 61 Query: 66 LRTAGSEMQMVPDVLI----------FAHRSGLAGLFPGLDRRLVNALL-------MCDE 108 L +++ + GL R+++ AL Sbjct: 62 LAGFRTDVTGLTADESRALFILAAQGAHAALGLDAALGSALRKVMTALPAPHRPAAEATS 121 Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQ 163 ++ P + L A+ RR+ L + P L+ Sbjct: 122 RRVLVDATRWKGGPQPVVDLETLQDAVFADRRLRLRYRHGGDAQPHTYTVDPYGLVSKAG 181 Query: 164 TWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214 WYLVA+ +F D + L + RR + V + + Sbjct: 182 VWYLVADRRAKPQLFRADRVRSATLLADPVRRRPGVELADAWEVLRRQVEE 232 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.127 0.349 Lambda K H 0.267 0.0396 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,311,925,149 Number of Sequences: 3077464 Number of extensions: 53067587 Number of successful extensions: 237351 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1265 Number of HSP's successfully gapped in prelim test: 1140 Number of HSP's that attempted gapping in prelim test: 233643 Number of HSP's gapped (non-prelim): 2623 length of query: 233 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 108 effective length of database: 655,713,356 effective search space: 70817042448 effective search space used: 70817042448 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.7 bits) S2: 91 (39.7 bits)