BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (233 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P52133 Uncharacterized HTH-type transcriptional regulat...   472   e-132
UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteria...   218   9e-56
UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherich...   167   2e-40
UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Provide...   167   3e-40
UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providenc...   160   3e-38
UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia c...   159   5e-38
UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yers...   155   1e-36
UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providenc...   155   1e-36
UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enter...   152   7e-36
UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Provide...   129   1e-28
UniRef50_C9QRE5 Transcriptional regulator protein-like protein n...   120   3e-26
UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 T...    97   4e-19
UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Cam...    91   4e-17
UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Provide...    90   6e-17
UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax...    89   1e-16
UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax...    88   3e-16
UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp....    81   3e-14
UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibri...    81   3e-14
UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobac...    80   6e-14
UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Ta...    79   2e-13
UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibr...    77   4e-13
UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-tu...    76   8e-13
UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter ...    75   2e-12
UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax...    70   4e-11
UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 T...    67   4e-10
UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibr...    52   2e-05
UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Provide...    49   2e-04
UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 ...    47   6e-04
UniRef50_B2PXP4 Putative uncharacterized protein n=1 Tax=Provide...    45   0.002
UniRef50_A5Z6R5 Putative uncharacterized protein n=1 Tax=Eubacte...    39   0.095

>UniRef50_P52133 Uncharacterized HTH-type transcriptional regulator yfjR n=15
           Tax=Enterobacteriaceae RepID=YFJR_ECOLI
          Length = 233

 Score =  472 bits (1214), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ
Sbjct: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
           SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP
Sbjct: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180
           SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL
Sbjct: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180

Query: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233
           DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE
Sbjct: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233


>UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteriaceae
           RepID=B1IPS8_ECOLC
          Length = 237

 Score =  218 bits (556), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 121/225 (53%), Positives = 152/225 (67%), Gaps = 4/225 (1%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+QAERR+DRL+VRLSLIISRL+AGETL++RKLAAEFGVS RTL RDFRERL+YLDLEYQ
Sbjct: 1   MSQAERRYDRLSVRLSLIISRLLAGETLNMRKLAAEFGVSERTLHRDFRERLIYLDLEYQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVI-APANP 118
            G CRL T G +       + FA +SG   LFP +D  LVN+LL   D SPC+I  P   
Sbjct: 61  DGCCRLLTGGRQEIREEAAMQFARQSGTGALFPDMDHHLVNSLLSSKDSSPCLIWHPGAS 120

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
           V S    + F RL++A++  R+VTL+A+G RC+ LAP RL+     W+LV EH   I VF
Sbjct: 121 VTSSRPGI-FTRLVRAVSENRKVTLLADGCRCDNLAPYRLIFSTGGWFLVGEHLARITVF 179

Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
            L  +H +    ETF  +    R++  P F+QALPHF  + HSLL
Sbjct: 180 ALHTVHSVTFHAETFTPDGHFTRILSHPDFLQALPHFH-VFHSLL 223


>UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherichia coli 83972
           RepID=C2DJQ1_ECOLX
          Length = 238

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/228 (41%), Positives = 138/228 (60%), Gaps = 6/228 (2%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M      HDRL+VRLS+IISRL+AGE+L ++ LA EFGVS RTL+RDF++RL++LDLE++
Sbjct: 12  MKTQHDHHDRLSVRLSVIISRLLAGESLELKVLADEFGVSERTLQRDFQQRLIHLDLEHR 71

Query: 61  SGYCRL-RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE--SPCVIAPAN 117
           SG  RL R  G E   +P+   F   SG++G+ P  +R+L+  L+  +   SPC+I    
Sbjct: 72  SGSYRLIRQTGRE--HLPNTFAFIRNSGISGIIPAQNRKLIR-LIASNSGVSPCLIGHGA 128

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
                +    F +L +AI   R VTL+  G+  E +AP RL+   + W+LVA    ++ V
Sbjct: 129 LSSPVTQTACFLKLAEAIRDYRAVTLLVNGKSYEAVAPRRLIFQSKNWFLVATRTRNLQV 188

Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
           F +++++ +  L  +FRR   L  L     FI ALPHFRFI   + TF
Sbjct: 189 FRMEDVNAVTVLDTSFRRKPELDALTASEEFISALPHFRFISDVIQTF 236


>UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PWJ3_PROST
          Length = 231

 Score =  167 bits (423), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/223 (44%), Positives = 131/223 (58%), Gaps = 5/223 (2%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-EY 59
           M + + RHDRLA+RLSLIISRL+AGETLS+R LA EFGVS RT++RD  ERL +LDL   
Sbjct: 1   MKKQDTRHDRLAMRLSLIISRLLAGETLSLRALANEFGVSERTIQRDLHERLSHLDLVSN 60

Query: 60  QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPC-VIAPAN 117
           ++GYC   T    +   PD+  F  + GLA  FPGL R+ VN L+  D   PC +++P  
Sbjct: 61  EAGYCLSSTLT--VWRTPDLFSFLQKVGLASYFPGLTRKTVNHLVQSDLHFPCFMLSPFE 118

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
              S      F++LIQAIT    V +  +      L P RL ++++ WYL+     ++ V
Sbjct: 119 TEFSSCDGECFYQLIQAITQHFIVQVKQKEGIYLHLEPYRLALYERAWYLIGYASPYVRV 178

Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220
             L  I  +   +  FRR   +CRL   P FI ALPHF FIQH
Sbjct: 179 IPLHHIQSVHITEIPFRRRKEICRLSSTPEFISALPHFEFIQH 221


>UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providencia rettgeri DSM 1131
           RepID=UPI000197BF5E
          Length = 441

 Score =  160 bits (406), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 130/219 (59%), Gaps = 1/219 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M + E R+DRLA+RL++++SRL  GE+L++ +LA EFGVS RT++RD RERL YLD EY 
Sbjct: 217 MPKQEHRYDRLAIRLAILVSRLFMGESLNISQLAQEFGVSGRTVQRDLRERLRYLDTEYI 276

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVIAPANPV 119
            G+  LR A    +   D+L FA  + +A  FP LD +L++ LL    +SPC+I    P 
Sbjct: 277 DGHVSLRDARGPFRTNSDILRFAQITSVAHYFPVLDPKLLSVLLDNRQDSPCIIWNDPPR 336

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            +P     F  ++Q+I   R +  +        +AP RL+ H   WYL A  +  I VFT
Sbjct: 337 QAPELFGGFQVIVQSIIRNRLIRFLHRKHLQSSIAPYRLICHDGEWYLAAVSKDRIQVFT 396

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218
           L  I  +     +F RN  + R+++DP F++ALPHF +I
Sbjct: 397 LSAITDVVMTASSFARNRHIDRILQDPRFMRALPHFDYI 435


>UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia coli
           RepID=Q4FBD3_ECOLX
          Length = 226

 Score =  159 bits (403), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/226 (42%), Positives = 136/226 (60%), Gaps = 3/226 (1%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+    RHDRLAVRLSLIISRL+ GE+LS++ L+ EFGV+ RTL+RDF +RL++LDLEY+
Sbjct: 1   MSDNRSRHDRLAVRLSLIISRLMTGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119
           +G   LR   S    +P++L F   +G+A + P  + RL+  L    E SPC+I    P 
Sbjct: 61  NGRYSLRRQSSP-GAIPEMLSFIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPD 119

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            + +    F +LI AI     ++L+AE R    L PCRL+ +  +WYL+A  +G + VF 
Sbjct: 120 ITATFPECFSQLILAIRQCIHISLMAE-RWYPSLEPCRLIYYSGSWYLIALQKGKLQVFP 178

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
           L +I  +    E F R   +  LV +  FI ALPHF FI   + TF
Sbjct: 179 LADIKSVSLTSERFERRGHIHNLVAEERFISALPHFSFIHKLINTF 224


>UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SV45_YERFR
          Length = 229

 Score =  155 bits (392), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M++    +DRLAVRL+LII RL  GE LS+  LA+EF VS RTLRRDF +RL+YLDLE  
Sbjct: 1   MSEVSMHYDRLAVRLALIIGRLFMGEGLSINALASEFNVSPRTLRRDFNQRLIYLDLEQV 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPV 119
            G  RL  +    +   D++ FA  + +A  FP LD +L++ LL  +  SP V+  A P 
Sbjct: 61  DGIYRLAKSHIGSRTDGDIIHFARVTHMAQFFPALDSKLLSVLLNKNVGSPYVVYHAPPK 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
             P+    F+R+ QAI     V L  +G     LAP RL+     WYLV EH   + VF 
Sbjct: 121 NPPALFGGFYRITQAIIDNVFVELSVQGNEYFNLAPYRLVYFDGYWYLVGEHNLTLQVFL 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220
           L  I  +      F + + +  L  +  FI+ALPHF+F+++
Sbjct: 181 LIHITDVTLTPRRFTKKEYITALTAEADFIKALPHFQFVRN 221


>UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providencia rettgeri DSM 1131
           RepID=UPI0001C349A5
          Length = 225

 Score =  155 bits (391), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 124/220 (56%), Gaps = 1/220 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+ +  RHDRLA RL+ IIS+L  GET+ +  L+ E  VS RTLRRDF ERL YLDLEY 
Sbjct: 1   MSTSVSRHDRLASRLAFIISQLFRGETVYLSALSEELNVSTRTLRRDFNERLQYLDLEYH 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM-CDESPCVIAPANPV 119
            G  RL  +    +   D+L FA  + +  LFP LDR+L+  LL    +SP ++    P 
Sbjct: 61  QGGYRLAASQRPFRTDKDILRFAAITHITSLFPALDRKLLTVLLDPTIDSPFIVYHTPPE 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
             PS    F+ L QAI  RR +    +G+    +AP +L+ +   WYL A+   HI VF 
Sbjct: 121 QRPSLFGGFYILTQAIVKRRLLQFAHQGKNITNVAPYKLIYYHGHWYLAADIAQHIHVFD 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQ 219
           +  +  +      FR  + L + + +  FIQALPH+++IQ
Sbjct: 181 VMALQDVVMTARGFRYREDLNQRLCEEAFIQALPHYQYIQ 220


>UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enterobacteriaceae
           RepID=C2LK81_PROMI
          Length = 235

 Score =  152 bits (385), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 135/229 (58%), Gaps = 2/229 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M Q  R++DR+AVRLS +I+RL+AGE+L +  LA EF VS RTL+RD RERL YL +E +
Sbjct: 1   MFQTNRKYDRMAVRLSALIARLMAGESLVLSCLAQEFNVSERTLQRDLRERLAYLGVEGR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPV 119
            G  RL     +     DVL F  + G+  LFPGLD RL+  LL     +PC+I      
Sbjct: 61  QGCYRLPINTLKAYRDKDVLTFVKQIGMTRLFPGLDSRLLGLLLTQQPHAPCLIWHHAHK 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            S   A  F++L+ AIT ++ ++L+   RR   L P +L+  +  WYL+AE+   + V  
Sbjct: 121 ISALHADHFYQLVYAITSKQSISLLTPERRFNPLQPYQLIYREGQWYLLAEYYQQVHVLL 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228
           L++I  +QPL   F    ++ +L +   FI ALPHFR I   +LT +P+
Sbjct: 181 LEDIQQVQPLNTPFTPKHAVMQLSQQNSFIAALPHFRLIS-QVLTSLPS 228


>UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Providencia
           RepID=B2PW39_PROST
          Length = 229

 Score =  129 bits (323), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M Q   RHDRL  RL+ I++ L  GETLS R LAAEF VS+RT++RDF ERL+YLD+E Q
Sbjct: 1   MAQPSPRHDRLVHRLAYILTHLFKGETLSPRVLAAEFNVSLRTIQRDFHERLVYLDIEQQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM--CDESPCVIAPANP 118
               RL    S ++   D+L FA  + +  LFP LDR+L++ LL      SP V+  A P
Sbjct: 61  EEGYRLAGGQSALRTDSDILQFAQITDITPLFPVLDRKLLSLLLSRHAQGSPYVVYHAPP 120

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
              PS    F  + QAI   + +     G+    +AP +L      WY+     G I   
Sbjct: 121 KALPSVYGGFALITQAILDNQFIHYEIGGKTTHWVAPYKLTYFNGHWYVCGVMNGLIHAV 180

Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQ 219
            L  +  +      F+ + +L + + +  FIQALPHF++I+
Sbjct: 181 ELLHLRDVGLSARHFKPDTALLQRMTERAFIQALPHFQYIK 221


>UniRef50_C9QRE5 Transcriptional regulator protein-like protein n=1
          Tax=Escherichia coli DH1 RepID=C9QRE5_ECOD1
          Length = 285

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
          MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ
Sbjct: 1  MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60

Query: 61 SG 62
          SG
Sbjct: 61 SG 62


>UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 Tax=Citrobacter sp.
           30_2 RepID=C1MBC8_9ENTR
          Length = 303

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 99/216 (45%), Gaps = 10/216 (4%)

Query: 7   RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66
           RHD+L  RL LI++RL  GE+L++R LA EF V  +T+RRD  +RL YL+L  Q     L
Sbjct: 3   RHDKLGYRLGLILTRLNNGESLTIRGLADEFNVCEKTIRRDLTKRLAYLNLHRQGKQYWL 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126
                  +   D+  F    G+ GLFP  + RL+N LL   E+   +    P  +    +
Sbjct: 63  PKGILGQRSNTDLRRFTRILGIEGLFPRWEDRLLNVLLGDTENNPFLIKKRPYENCGAFM 122

Query: 127 SFWRLIQ-AITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185
           S    I  AI    ++    + +      P R++  +  WYL A HEG +  F +  +  
Sbjct: 123 STLNAISGAIQASLKIAFTYKEKMFSATEPYRVVNDRGLWYLAARHEGTLKSFAVSTMTH 182

Query: 186 IQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS 221
           +Q          S  R   DPV  Q + H   I + 
Sbjct: 183 VQV---------SNMRFSPDPVVSQQVEHAESIWYG 209


>UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Campylobacter
           RepID=Q5HVJ9_CAMJR
          Length = 290

 Score = 90.5 bits (223), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 3/202 (1%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
           + +D+L++RL  I+S+   GE+LS ++LA EF V  RT++RD  ERL ++ ++ ++G   
Sbjct: 2   KEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRYV 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
           L +         D+  FA  SG+A L+P LD+  +  LL    +  ++            
Sbjct: 62  LESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDYE 121

Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185
           L F  L  AI     +    + ++  ++ P +L+ ++  WYL+ +    +  F LD+I  
Sbjct: 122 L-FKDLSVAILKHNVLNFFYK-KKERQIKPYKLVNYKGIWYLLGDENDKLKHFNLDKISK 179

Query: 186 IQPLQETFRRNDSLCRLVE-DP 206
           ++   E F  N+ L   ++ DP
Sbjct: 180 LRTKNENFIPNEKLQEQIQNDP 201


>UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PXP5_PROST
          Length = 146

 Score = 89.7 bits (221), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 79/144 (54%), Gaps = 1/144 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M    R++DR+A+RLS +I+RLVAGE L +  LA EF V  RTL+RD RERL YL +EY+
Sbjct: 1   MLPTNRKYDRMAMRLSALITRLVAGENLVLTDLACEFNVPARTLQRDLRERLAYLGVEYR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-LDRRLVNALLMCDESPCVIAPANPV 119
               RL     +     DVL F  + G+  LFPG   R L   L     +P +I      
Sbjct: 61  KRVYRLPLNTLKAYRDKDVLTFVKQMGMTRLFPGLDSRLLNLLLSQRQHAPYLIWHHAHR 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTL 143
            S   A  F++L+ AI G + +TL
Sbjct: 121 TSAEHAEHFYQLVYAIIGYQHITL 144


>UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax=Campylobacter
           RepID=B9CZE1_WOLRE
          Length = 288

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 1/199 (0%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
           R HD++  RLS I++RL +G  L + +L  EF V+ RT+ RDF ERL  L ++ ++G   
Sbjct: 2   RSHDKIGFRLSRILTRLNSGARLGIDELVEEFNVNKRTILRDF-ERLSILPIQKENGKYF 60

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
           L           D+  FA   G   LFP LD R ++ +L    +   +       S   +
Sbjct: 61  LEEYALGKLGFKDIKAFAALIGARSLFPELDDRFISDVLNEKLNKAYLIKNQGFESIQIS 120

Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185
              +  + A   + R        +  +L P +L+ +   WYL+A+ EG +  FTL +I  
Sbjct: 121 RDDFEAVSAAVIKNRTLECEYNGKERKLNPYKLINNSGIWYLLADDEGKLKNFTLSKIKR 180

Query: 186 IQPLQETFRRNDSLCRLVE 204
           I+   +TF  N    + +E
Sbjct: 181 IKIKGDTFAANAEFLKRIE 199


>UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax=Proteobacteria
           RepID=A1VQX0_POLNA
          Length = 301

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 11/213 (5%)

Query: 8   HDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLR 67
           HD L  RL+LI+ +L  GE L  + LA EF V++RT++RD  ER  YL LE   G   L 
Sbjct: 9   HDTLVYRLALILVKLNQGEKLDPQALADEFSVNLRTIQRDLNERFAYLPLEKTDGLYHLH 68

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA-L 126
                     DV  FA  +G+ GLFP L    +  +        ++   +     +G   
Sbjct: 69  PTFLGKLSTRDVERFASLAGVRGLFPSLSDDFLRDIFDTGIQASLLVKGHNYEHLAGKEA 128

Query: 127 SFWRLIQAITGRRRVTLIAEGRRCERLA------PCRLLIHQQTWYLVAEHEGHIAVFTL 180
           +F +L QAI  RR +    E R+ E +       P +L+ H+  WYL A+  G +  F+ 
Sbjct: 129 NFRQLEQAIVTRRSIAF--EYRKDEGIKLYADVEPYKLMNHKGIWYLAAKDGGKLKTFSF 186

Query: 181 DEIHLIQPLQETFRRNDSLCR--LVEDPVFIQA 211
             I  +  L   F  + S+ +  L ED +++  
Sbjct: 187 ARIERLVLLNAIFLPDPSVDKTLLEEDGIWLSG 219


>UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QCN2_SULNB
          Length = 307

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 108/217 (49%), Gaps = 15/217 (6%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL----MYLD---L 57
           ++ +D++  RL++I+SRL   E LSV +LA EF VS RT++RDF ERL    +Y D    
Sbjct: 4   KKDYDKILTRLTVILSRLYDREALSVTELAEEFNVSGRTIQRDFNERLISFPIYQDKKKW 63

Query: 58  EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117
           + Q G+   +    E Q+V D+ I      + G F     +L++ +   D +P  I    
Sbjct: 64  KMQDGFRIEKIKSIEEQLVLDI-IEKMTESIGGKFATTSHKLLSKIKNEDFNP--IYTKL 120

Query: 118 PVPSPSGALSFWRLIQ-AITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEHE 172
            +   S      +LI+ AI  +  +    E  R       + P +++ ++  WYLVA  +
Sbjct: 121 NIEDISDRFDDIQLIEKAIKDKTELECSYENEREGTFRANIQPLKIVNYEGFWYLVAFKD 180

Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209
           G +  + +  +  IQP  +TF  ++ +  L+++ + I
Sbjct: 181 GTVQKYYIKTLSNIQPTAKTFTVDEDIEELLKNSINI 217


>UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibrio splendidus 12B01
           RepID=A3UTJ4_VIBSP
          Length = 296

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 2/179 (1%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
           + HD LA RL +I++RL  GE L + +L+ EF VS RTL+RDF ERL YL ++       
Sbjct: 5   KEHDTLAKRLGIILTRLNTGEKLYLEELSREFRVSERTLQRDFNERLNYLPIQRDGACYF 64

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
           L       Q   +V +   + G   LF G    L N +L    +P  +     +   S  
Sbjct: 65  LDPQALGRQSNNEVSLLLMKMGFDTLFSG-KHYLSNGVLNNKSTPPFLFKNPQIEDISKN 123

Query: 126 LS-FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183
            S F +LI++I  +  +     G+  +   P RL+  +  WYL   H   +    + +I
Sbjct: 124 ASVFEKLIESIQRKSTIGFTCNGKSYDEFHPYRLVNDRGHWYLAGTHRNRLESLRVAKI 182


>UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobacteria
           RepID=Q1QC98_PSYCK
          Length = 300

 Score = 80.1 bits (196), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 16/200 (8%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSG--Y 63
           R+H+RLA RLS II RL  GE L++ +LA  + VS+RTL+RDF++RL  L+L Y+ G  +
Sbjct: 4   RKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLEL-YEEGPQF 62

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123
            RL  +      + D+  FA  + +  L P +DR+     L    +  +        + S
Sbjct: 63  YRLHPSNIGYLDIADIQRFASFASVQDLLPKIDRQFFQEKL----NQSIFVKGFAYENIS 118

Query: 124 GALSFWRLI-QAITGRRRVTLI--------AEGRRCERLAPCRLLIHQQTWYLVAEHEGH 174
                +R I QAIT  + +           +   +   L P  LL     WY+V    G 
Sbjct: 119 ERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPYHLLNKNGIWYVVGRLHGQ 178

Query: 175 IAVFTLDEIHLIQPLQETFR 194
              F   ++  +    ETF+
Sbjct: 179 TRTFCFTQMTQLHINTETFQ 198


>UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Tax=Acinetobacter
           RepID=B7GVE1_ACIB3
          Length = 303

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 13/177 (7%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL------MY 54
           M ++ + H+RLA RL+ II+RL  GE L   +L  +FGV+ +T++RD  ERL      + 
Sbjct: 1   MVKSLKAHERLAERLANIITRLNRGEYLDSNELTLDFGVTKKTIQRDI-ERLSIAGLPLV 59

Query: 55  LDLEYQSGYCRLRTAGSEMQMVP-DVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVI 113
           +D + +  Y      G   ++ P D+  FA  SG+ GL+P LD   +  LL    S    
Sbjct: 60  IDEKTRKFYLGANYVG---KISPQDIQNFAQLSGITGLYPNLDLSFLRELLDSRSSEVYA 116

Query: 114 APANPVPSPSGALSFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVA 169
           A      + +     ++LI +AI  R+++T      +   + P +L+ H  +WYL A
Sbjct: 117 AKGYFFENTTHFSELFKLIREAIQDRKQITF-QYNSKLRTVQPYKLIHHHGSWYLAA 172


>UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibrio
           RepID=D2YQU2_VIBMI
          Length = 290

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 5/178 (2%)

Query: 7   RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66
           + ++LA RLS I+SRL AGE LS+  L  EFGV  RT+ RDF  RL +L +E + GY  L
Sbjct: 3   KSEKLAYRLSQILSRLYAGEKLSLIDLEQEFGVHERTVLRDF-NRLAFLPIEREEGYYYL 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126
           +            L      G+  LFP  DR+ +   L   ++P ++    P+   +   
Sbjct: 62  KQLDHRNPKAHKALHALSNMGIDKLFP--DRKTMTQAL-NHKTPSILFRHIPIEDSARFR 118

Query: 127 SFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183
               LI  AI  R  +TL    RR  ++ P +L+  +  WYL+A        F + EI
Sbjct: 119 DTLILIADAIHQRNTLTLTFHNRRYHQMEPYQLINERGYWYLIAAQRTQPHSFRVAEI 176


>UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-turn-helix
           domain-containing protein n=3 Tax=Pasteurellaceae
           RepID=B8F3U1_HAEPS
          Length = 295

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 13/202 (6%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
           +++  LA RLS I+S+L  G+ + + +LA +FGVSVRT++RD ++RL +L+ E +SG   
Sbjct: 2   QKNTVLAQRLSEILSQLNQGKRIDINQLAEDFGVSVRTIQRDIKDRLAFLEWE-ESGPRH 60

Query: 66  LRTAGSEMQMVP--DVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123
            +    ++ ++   D+  FA  + ++ LFP +DR      L    +  V           
Sbjct: 61  YKINRYKLGILSQQDISRFALFASISDLFPKVDRDFYQEKL----TDSVKVKGFQYEDIR 116

Query: 124 GALSFWRLI-QAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
              + ++LI QAI   + +  + +       +  ++AP  L+     WYL+   E     
Sbjct: 117 HLDNEFQLIKQAIEAHKFIDFLYKKSGQIDGKFYKIAPYSLINKNGIWYLIGTDEDKQKT 176

Query: 178 FTLDEIHLIQPLQETFRRNDSL 199
           F   +I +++ L ETF  N  L
Sbjct: 177 FCFTQITMLKMLDETFEPNQQL 198


>UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter RepID=D0SAP6_ACIJO
          Length = 301

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 89/195 (45%), Gaps = 22/195 (11%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL--- 57
           M +    H+RLA RL+ I+++L  G  L V +LA EF VS RT+ RDF     YL L   
Sbjct: 1   MKRKASTHERLAERLANILTKLNTGYQLGVAELAHEFQVSTRTIERDFDRLNTYLPLFQD 60

Query: 58  EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117
           EY   Y          ++  D+  FA  SG++ L+P LD   +  LL  DE       AN
Sbjct: 61  EYTKKYFLDPVYLGRFKL-QDIQNFAQLSGISELYPSLDMTFLRGLL--DER------AN 111

Query: 118 PVPSPSG---------ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLV 168
            V S  G         A  F     AI  R++++ I        + P RL+ HQ +WYL 
Sbjct: 112 QVFSAKGYYYENAQQFAEHFQVFAGAIHKRQKISFIYND-LLRHVDPYRLIHHQGSWYLA 170

Query: 169 AEHEGHIAVFTLDEI 183
           A     +  + L +I
Sbjct: 171 AAVADELRAYRLSKI 185


>UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax=Acidovorax
           delafieldii 2AN RepID=C5SZH4_ACIDE
          Length = 306

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 9/212 (4%)

Query: 9   DRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRT 68
           D +A RL+ I+ RL  GE L    L  EFGV++RT++RD  +R  +LDL  + G   +  
Sbjct: 9   DTIAYRLTEILRRLNEGEALDPHALVEEFGVNLRTIQRDLNQRFAFLDLVKKDGRYTIDR 68

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPVPSPSGALS 127
           +      + DV  FA  +GL GL P L    +  +L    +S  +I   N     +    
Sbjct: 69  SRLGTLTLHDVQRFASLAGLQGLHPRLSTGFLRDILDTRLQSALLIRGHNYEDLHNKESE 128

Query: 128 FWRLIQAITGRRRVTL------IAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLD 181
           F +L QA    R V+           +  + + P +L+     WYL A   G    + + 
Sbjct: 129 FNQLKQAAQQHRVVSFEYRKPDSTAAKLVDDIRPYKLVNQDGIWYLAATDAGKPKSYAVS 188

Query: 182 EIHLIQPLQETFRRNDSLCRLV--EDPVFIQA 211
            I  +  L +TF  + ++ + +  ED V+++ 
Sbjct: 189 RIERLLVLADTFTPDPAVLQQIANEDSVWLKT 220


>UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 Tax=Vibrio parahaemolyticus
           AQ4037 RepID=UPI0001BC6CCB
          Length = 286

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 16/192 (8%)

Query: 7   RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66
           + ++LA+RL  I++RL  GE LS  +L A++ VS +TLRRDF ERL+   +   +   RL
Sbjct: 4   KSEKLALRLGDILTRLFMGEVLSPEQLVADYQVSEKTLRRDFNERLVNAPIIRTNEGYRL 63

Query: 67  R--TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
              T  +       VL   H +GL+ L P       N       +P +    NP     G
Sbjct: 64  DPVTRNNGNANTNKVL---HDTGLSALLP-------NHYKFNGHTPVLF--KNPRSESIG 111

Query: 125 ALS--FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDE 182
                F +L + IT    + L   G+  E   P RL+  +  W+L A +   +  + L  
Sbjct: 112 KFDALFRQLTEVITTHSVIDLTYNGKTFESAHPYRLVNDRGIWFLAATYCDQLHSYRLPN 171

Query: 183 IHLIQPLQETFR 194
           I  I   ++ ++
Sbjct: 172 ISRIHRREDKYK 183


>UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibrio shilonii AK1
           RepID=A6D7H7_9VIBR
          Length = 255

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 14/161 (8%)

Query: 36  EFGVSVRTLRRDFRERLMYLD-LEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG 94
           E+GVS +TLRRDF +RL+    ++   GY       S       +L     SGL+ L P 
Sbjct: 3   EYGVSEKTLRRDFNQRLINTPIMKTAHGYQLENQLNSSYVTTKRIL---DDSGLSSLLPP 59

Query: 95  LDRRLVNALLMCDESPCVIAPANPVPSPSGALS--FWRLIQAITGRRRVTLIAEGRRCER 152
                         SP  I   NP    +      F ++  AIT R  + L  +GR   +
Sbjct: 60  KHN--------ISTSPSTILFKNPRIEDTHKFDGVFTQINSAITSRTIIDLTYQGRLITQ 111

Query: 153 LAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETF 193
           + P RL+  +  WYL     G +  + L ++  I   ++ +
Sbjct: 112 VHPYRLVNDRGIWYLSGVASGQLYSYRLAKVSQIHTAEDKY 152


>UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PXB7_PROST
          Length = 286

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 15/201 (7%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGS 71
            VRL+ II        +   +LA+ F VS RT+ RD     + L+ +  S Y    T   
Sbjct: 9   GVRLATIILEAYLYGEVDKYELASRFKVSERTIYRDLNSLNLILEHKGNSKYG-FSTVVE 67

Query: 72  EMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL---SF 128
             +M+          G+    P   +  + ++    ++  V+   N +     +     +
Sbjct: 68  YYKMISFF-------GIDKYLPDFSQSFLKSIPETIQNRSVLIKFNGIEHKIKSYLKTHY 120

Query: 129 WRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQP 188
            R+  AI  +R   ++ + +    + P +L+ H   WYL A  EG +  F+L+ I  +  
Sbjct: 121 ERIRYAIDNKRECHILYKSKN-RTIYPYKLICHNTIWYLNAIEEGKLKSFSLNRIEWLDV 179

Query: 189 LQETFRRNDSLCRLV---EDP 206
            ++TF  ++++  ++   +DP
Sbjct: 180 SKKTFLPDNNIVNMLMESKDP 200


>UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 Tax=Vitreoscilla
           sp. RepID=O85446_9NEIS
          Length = 190

 Score = 46.6 bits (109), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-LEYQSGYCRLRT 68
           +LA RLS I+  L +G+ LS   LA ++GVS++T++RD  +RL  L  LE    +  L T
Sbjct: 7   KLAERLSAILVDLHSGQRLSAHGLAEKYGVSLKTIKRDLGQRLDNLPWLETGPQFYCLDT 66

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG-ALS 127
              +   +  +  F   + +  LFP  D+  ++ LL       ++       +  G    
Sbjct: 67  QQMQHTNLETLTRFCWFAAIKELFPPKDQAFLDNLL----KDHILVKGLKYENIQGLKQQ 122

Query: 128 FWRLIQAITGRRRVTL----IAEGR-RCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDE 182
           F +L QAI     V      I E + +   +AP  L+     WY++   +G    +   +
Sbjct: 123 FLQLEQAIDLYHMVYFDYCKINEKQAKPYTIAPYGLVNKNGIWYVIGLDQGREKTYNFVQ 182

Query: 183 I 183
           I
Sbjct: 183 I 183


>UniRef50_B2PXP4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PXP4_PROST
          Length = 64

 Score = 44.7 bits (104), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 168 VAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226
           +AE+   + VF L++I  ++PL  TF    ++ +L +   FI ALPHFR I   L+  +
Sbjct: 1   MAEYHQKVHVFLLEDIQSVKPLSSTFIPQKNINQLSQQNSFIAALPHFRLISQLLMPLI 59


>UniRef50_A5Z6R5 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
          ATCC 27560 RepID=A5Z6R5_9FIRM
          Length = 105

 Score = 39.3 bits (90), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 18 IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL-DLEYQSGYCRLRTAGSE 72
          I  RL+ GE +SVR+LA E+ VS +T+ RD  E   YL + EY++G  ++  +  E
Sbjct: 13 IFFRLLKGEFVSVRQLADEYSVSGKTVSRDINEIRAYLSENEYRNGNAQIEYSHRE 68


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P52133 Uncharacterized HTH-type transcriptional regulat...   316   4e-85
UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providenc...   264   2e-69
UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yers...   262   8e-69
UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteria...   258   1e-67
UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providenc...   257   3e-67
UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enter...   255   1e-66
UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia c...   254   1e-66
UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherich...   243   3e-63
UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Provide...   243   3e-63
UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Provide...   241   2e-62
UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 T...   236   4e-61
UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax...   234   2e-60
UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax...   224   2e-57
UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Cam...   219   5e-56
UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibri...   216   4e-55
UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax...   213   5e-54
UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-tu...   203   5e-51
UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobac...   195   7e-49
UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter ...   194   2e-48
UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibr...   192   8e-48
UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Ta...   188   8e-47
UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 T...   184   2e-45
UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp....   183   6e-45
UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 ...   179   7e-44
UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Provide...   167   3e-40
UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibr...   153   4e-36
UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Provide...   153   6e-36
UniRef50_C9QRE5 Transcriptional regulator protein-like protein n...   113   7e-24

Sequences not found previously or not previously below threshold:

UniRef50_A4W669 Regulatory protein, DeoR n=3 Tax=Enterobacteriac...   110   4e-23
UniRef50_B9KCA9 Putative uncharacterized protein n=1 Tax=Campylo...    94   3e-18
UniRef50_A8S168 Putative uncharacterized protein n=1 Tax=Clostri...    92   2e-17
UniRef50_Q0AX84 YobV n=1 Tax=Syntrophomonas wolfei subsp. wolfei...    85   2e-15
UniRef50_C9AAC3 Transcriptional regulator n=3 Tax=Enterococcus c...    84   3e-15
UniRef50_C6SP18 Putative uncharacterized protein n=2 Tax=Strepto...    83   7e-15
UniRef50_C9LWR7 HTH domain protein n=1 Tax=Selenomonas sputigena...    83   7e-15
UniRef50_Q2LTY7 Predicted transcriptional regulator, DeoR family...    82   2e-14
UniRef50_Q7X2G0 Putative repressor n=3 Tax=Streptomyces RepID=Q7...    81   3e-14
UniRef50_UPI0001C37EC6 helix-turn-helix type 11 domain-containin...    80   6e-14
UniRef50_Q5WD79 Transcriptional regulator n=5 Tax=Bacillus RepID...    80   6e-14
UniRef50_D1B1H8 Putative uncharacterized protein n=1 Tax=Sulfuro...    80   6e-14
UniRef50_UPI0001C425E1 hypothetical protein BpOF4_16355 n=1 Tax=...    80   7e-14
UniRef50_A6P211 Putative uncharacterized protein n=5 Tax=Bacteri...    80   9e-14
UniRef50_C6D6M2 Helix-turn-helix type 11 domain protein n=1 Tax=...    79   1e-13
UniRef50_A4J6Q1 Transcriptional regulator-like protein n=2 Tax=P...    79   1e-13
UniRef50_A7GBR0 Putative uncharacterized protein n=10 Tax=Bacter...    79   1e-13
UniRef50_C6PMV9 Helix-turn-helix type 11 domain protein n=1 Tax=...    78   3e-13
UniRef50_C9XKH2 DeoR-family transcriptional regulator n=4 Tax=Cl...    77   4e-13
UniRef50_Q92EJ5 Lin0464 protein n=2 Tax=Firmicutes RepID=Q92EJ5_...    77   5e-13
UniRef50_C0CTB1 Putative uncharacterized protein n=4 Tax=Firmicu...    77   5e-13
UniRef50_D2Q3M3 Helix-turn-helix type 11 domain protein n=1 Tax=...    77   7e-13
UniRef50_C1SIZ5 Predicted transcriptional regulator, COG2378 n=1...    77   7e-13
UniRef50_Q5WCJ1 Transcriptional regulator n=1 Tax=Bacillus claus...    76   8e-13
UniRef50_B2JN46 Helix-turn-helix type 11 domain protein n=4 Tax=...    76   8e-13
UniRef50_C7NAI6 Helix-turn-helix type 11 domain protein n=3 Tax=...    76   8e-13
UniRef50_C1SHC7 Putative uncharacterized protein n=1 Tax=Denitro...    76   8e-13
UniRef50_Q65LG5 Hypothetical DNA-binding protein n=1 Tax=Bacillu...    76   9e-13
UniRef50_C6PV47 Helix-turn-helix type 11 domain protein n=2 Tax=...    75   2e-12
UniRef50_Q8F269 Transcription regulator n=2 Tax=Leptospira inter...    75   2e-12
UniRef50_Q9S3S5 Putative uncharacterized protein n=1 Tax=Enteroc...    75   2e-12
UniRef50_A3CLM4 Putative uncharacterized protein n=2 Tax=Strepto...    75   2e-12
UniRef50_D0MGR2 Helix-turn-helix type 11 domain protein n=1 Tax=...    75   2e-12
UniRef50_C0EAB2 Putative uncharacterized protein n=1 Tax=Clostri...    74   3e-12
UniRef50_B8DCU5 HTH domain family n=6 Tax=Listeria monocytogenes...    74   3e-12
UniRef50_C5REL4 Helix-turn-helix type 11 domain protein n=1 Tax=...    74   4e-12
UniRef50_A0AFG8 Complete genome n=16 Tax=Listeria RepID=A0AFG8_L...    74   4e-12
UniRef50_C9MZ16 HTH domain protein n=1 Tax=Leptotrichia hofstadi...    74   4e-12
UniRef50_UPI0001788164 Helix-turn-helix type 11 domain protein n...    73   6e-12
UniRef50_A7VYA2 Putative uncharacterized protein n=1 Tax=Clostri...    73   6e-12
UniRef50_C6CRF1 Helix-turn-helix type 11 domain protein n=1 Tax=...    73   8e-12
UniRef50_C3L2F0 Transcription regulator n=4 Tax=Clostridium RepI...    73   8e-12
UniRef50_B2T6R2 Helix-turn-helix type 11 domain protein n=4 Tax=...    73   1e-11
UniRef50_B1C6Z1 Putative uncharacterized protein n=1 Tax=Anaerof...    72   1e-11
UniRef50_A7ZBV9 HTH domain family n=1 Tax=Campylobacter concisus...    72   1e-11
UniRef50_C4FVK8 Putative uncharacterized protein n=2 Tax=Catonel...    72   2e-11
UniRef50_C6D7L1 Helix-turn-helix type 11 domain protein n=1 Tax=...    71   2e-11
UniRef50_A9B2R1 Helix-turn-helix type 11 domain protein n=2 Tax=...    71   2e-11
UniRef50_B2V022 DeoR-family transcriptional regulator n=5 Tax=Cl...    71   2e-11
UniRef50_A6VRC7 Helix-turn-helix type 11 domain protein n=3 Tax=...    71   2e-11
UniRef50_C2U625 Helix-turn-helix type 11 domain protein n=2 Tax=...    71   2e-11
UniRef50_D1PN27 Transcriptional regulator, DeoR family n=3 Tax=C...    71   2e-11
UniRef50_UPI0001789548 Helix-turn-helix type 11 domain protein n...    71   3e-11
UniRef50_B3QT91 Putative uncharacterized protein n=1 Tax=Chloroh...    71   3e-11
UniRef50_A9KRE5 Helix-turn-helix type 11 domain protein n=1 Tax=...    70   5e-11
UniRef50_A8LFK5 Helix-turn-helix type 11 domain protein n=5 Tax=...    70   5e-11
UniRef50_A6F2P0 Transcriptional regulator, DeoR family protein n...    70   5e-11
UniRef50_C3XIJ3 Aspartate ammonia-lyase n=1 Tax=Helicobacter bil...    70   5e-11
UniRef50_A4XCA7 Helix-turn-helix, type 11 domain protein n=7 Tax...    70   6e-11
UniRef50_Q9RY95 Repressor protein, putative n=1 Tax=Deinococcus ...    70   8e-11
UniRef50_C0ZCT1 Putative transcriptional regulator n=1 Tax=Brevi...    70   8e-11
UniRef50_D0RTY4 DeoR-family transcriptional regulator n=3 Tax=St...    69   1e-10
UniRef50_C9NKS1 Helix-turn-helix type 11 domain protein n=5 Tax=...    69   1e-10
UniRef50_B1BVT1 Transcriptional regulator, DeoR family n=3 Tax=B...    69   1e-10
UniRef50_C1IA92 Transcription regulator n=1 Tax=Clostridium sp. ...    69   1e-10
UniRef50_B8FUA6 Helix-turn-helix type 11 domain protein n=3 Tax=...    69   1e-10
UniRef50_C5EHW4 Helix-turn-helix type 11 domain-containing prote...    69   1e-10
UniRef50_B0N590 Putative uncharacterized protein n=2 Tax=Bacteri...    69   1e-10
UniRef50_Q1JX03 Helix-turn-helix, type 11 n=1 Tax=Desulfuromonas...    68   2e-10
UniRef50_D2Q2S8 Helix-turn-helix type 11 domain protein n=2 Tax=...    68   2e-10
UniRef50_B5HKG2 Truncated DeoR-family transcriptional regulator ...    68   2e-10
UniRef50_A0QS56 DeoR-family protein transcriptional regulator n=...    68   2e-10
UniRef50_A9KM28 Helix-turn-helix type 11 domain protein n=2 Tax=...    68   2e-10
UniRef50_A8SDS7 Putative uncharacterized protein n=1 Tax=Faecali...    68   2e-10
UniRef50_A3CLQ0 Transcriptional regulator, putative n=3 Tax=Stre...    68   3e-10
UniRef50_D2QLY3 Helix-turn-helix type 11 domain protein n=1 Tax=...    68   3e-10
UniRef50_B9M6Q6 Helix-turn-helix type 11 domain protein n=5 Tax=...    68   3e-10
UniRef50_UPI000050FDF4 DeoR family transcriptional regulator n=1...    67   4e-10
UniRef50_B8FW42 Helix-turn-helix type 11 domain protein n=3 Tax=...    67   4e-10
UniRef50_A6DE69 Transcriptional regulator, putative n=1 Tax=Cami...    67   5e-10
UniRef50_B7HZL2 HTH domain family n=31 Tax=Bacillus RepID=B7HZL2...    67   5e-10
UniRef50_B4UYC1 Helix-turn-helix type 11 domain containing prote...    66   6e-10
UniRef50_C6D1B9 Helix-turn-helix type 11 domain protein n=1 Tax=...    66   7e-10
UniRef50_B2A042 Helix-turn-helix type 11 domain protein n=1 Tax=...    66   7e-10
UniRef50_B1CBH7 Putative uncharacterized protein n=1 Tax=Anaerof...    66   7e-10
UniRef50_B0MJK4 Putative uncharacterized protein n=1 Tax=Anaeros...    66   7e-10
UniRef50_B1I4N6 Regulatory protein, DeoR n=1 Tax=Candidatus Desu...    66   9e-10
UniRef50_Q897M9 Conserved protein n=2 Tax=Clostridium RepID=Q897...    66   9e-10
UniRef50_C6CXS9 Helix-turn-helix type 11 domain protein n=1 Tax=...    66   1e-09
UniRef50_D2QV53 Helix-turn-helix type 11 domain protein n=1 Tax=...    66   1e-09
UniRef50_B3PHR5 Predicted transcriptional regulator n=1 Tax=Cell...    66   1e-09
UniRef50_C0A8I4 Helix-turn-helix, type 11 domain protein n=1 Tax...    66   1e-09
UniRef50_A9AWW0 Helix-turn-helix type 11 domain protein n=1 Tax=...    66   1e-09
UniRef50_B5D329 Putative uncharacterized protein n=1 Tax=Bactero...    66   1e-09
UniRef50_C4KYJ3 Helix-turn-helix type 11 domain protein n=1 Tax=...    66   1e-09
UniRef50_Q0S564 Possible transcriptional regulator n=4 Tax=Rhodo...    65   1e-09
UniRef50_B0MYF1 Putative uncharacterized protein n=1 Tax=Alistip...    65   2e-09
UniRef50_C9RCX8 Transcriptional regulator-like protein n=1 Tax=A...    65   2e-09
UniRef50_O34920 Uncharacterized HTH-type transcriptional regulat...    65   2e-09
UniRef50_A9KIF8 Helix-turn-helix type 11 domain protein n=1 Tax=...    65   2e-09
UniRef50_D1AKN4 Helix-turn-helix type 11 domain protein n=1 Tax=...    65   2e-09
UniRef50_A8MEN8 Helix-turn-helix type 11 domain protein n=14 Tax...    65   3e-09
UniRef50_D1ARJ4 Helix-turn-helix type 11 domain protein n=1 Tax=...    65   3e-09
UniRef50_A9AUR2 Helix-turn-helix type 11 domain protein n=1 Tax=...    65   3e-09
UniRef50_C4DT59 Predicted transcriptional regulator, COG2378 n=1...    65   3e-09
UniRef50_UPI0001B58C22 helix-turn-helix type 11 domain-containin...    65   3e-09
UniRef50_C8WKG8 Helix-turn-helix type 11 domain protein n=1 Tax=...    64   3e-09
UniRef50_C2KY98 Transcriptional regulator n=5 Tax=Clostridiales ...    64   3e-09
UniRef50_UPI00019790EA hypothetical protein HcinC1_09731 n=1 Tax...    64   3e-09
UniRef50_UPI0001789485 Helix-turn-helix type 11 domain protein n...    64   4e-09
UniRef50_C6CS13 Helix-turn-helix type 11 domain protein n=3 Tax=...    64   4e-09
UniRef50_A4C3H1 Predicted transcriptional regulator n=2 Tax=Gamm...    64   4e-09
UniRef50_Q65L70 Hypothetical DNA-binding protein n=1 Tax=Bacillu...    64   4e-09
UniRef50_A6LYP1 Helix-turn-helix, type 11 domain protein n=1 Tax...    64   4e-09
UniRef50_C7PP77 Helix-turn-helix type 11 domain protein n=3 Tax=...    64   5e-09
UniRef50_B9YCC8 Putative uncharacterized protein n=1 Tax=Holdema...    64   5e-09
UniRef50_B5GB15 DeoR-family protein transcriptional regulator n=...    63   6e-09
UniRef50_A0NRK1 Predicted transcriptional regulator n=2 Tax=Labr...    63   6e-09
UniRef50_C6CXH2 Helix-turn-helix type 11 domain protein n=2 Tax=...    63   7e-09
UniRef50_UPI0001B564E6 helix-turn-helix type 11 domain-containin...    63   7e-09
UniRef50_Q73PY5 Transcriptional regulator, putative n=1 Tax=Trep...    63   8e-09
UniRef50_A1ALA5 Helix-turn-helix, type 11 domain protein n=1 Tax...    63   9e-09
UniRef50_A9E8Y8 Helix-turn-helix, type 11 n=1 Tax=Oceanibulbus i...    63   9e-09
UniRef50_A4SCA5 Putative uncharacterized protein n=1 Tax=Chlorob...    63   1e-08
UniRef50_A5I226 DeoR-family transcriptional regulator n=13 Tax=C...    63   1e-08
UniRef50_UPI0001788CE6 Helix-turn-helix type 11 domain protein n...    63   1e-08
UniRef50_Q73PA8 Transcriptional regulator, putative n=2 Tax=Bact...    63   1e-08
UniRef50_C0C4Y8 Putative uncharacterized protein n=1 Tax=Clostri...    62   1e-08
UniRef50_B8DYL9 Putative uncharacterized protein n=1 Tax=Dictyog...    62   1e-08
UniRef50_C7PEN6 Helix-turn-helix type 11 domain protein n=1 Tax=...    62   1e-08
UniRef50_D2BDS4 DeoR family transcriptional regulator n=2 Tax=Ac...    62   2e-08
UniRef50_C0CXX2 Putative uncharacterized protein n=1 Tax=Clostri...    62   2e-08
UniRef50_B1C2N9 Putative uncharacterized protein n=1 Tax=Clostri...    62   2e-08
UniRef50_C8PRK5 HTH domain protein n=1 Tax=Treponema vincentii A...    62   2e-08
UniRef50_A3I1Q3 Putative deoR-family transcriptional regulator n...    61   2e-08
UniRef50_UPI0001BC5E8A helix-turn-helix, type 11 domain-containi...    61   2e-08
UniRef50_C5BVH8 Helix-turn-helix type 11 domain protein n=1 Tax=...    61   2e-08
UniRef50_D1B1L2 Transcriptional regulator protein-like protein n...    61   2e-08
UniRef50_C7Q8N4 Helix-turn-helix type 11 domain protein n=12 Tax...    61   2e-08
UniRef50_D2PRW1 Helix-turn-helix type 11 domain protein n=1 Tax=...    61   3e-08
UniRef50_C2G2T1 Helix-turn-helix, type 11 domain protein n=2 Tax...    61   3e-08
UniRef50_A4FQS7 DeoR-family transcriptional regulator n=3 Tax=Ac...    61   3e-08
UniRef50_Q15PY3 Helix-turn-helix, type 11 n=1 Tax=Pseudoalteromo...    61   3e-08
UniRef50_A0RAF1 Putative uncharacterized protein n=10 Tax=Bacill...    61   4e-08
UniRef50_D2B9H3 DeoR family transcriptional regulator n=3 Tax=Ac...    61   4e-08
UniRef50_C3WQ96 Transcriptional regulator n=3 Tax=Fusobacterium ...    60   5e-08
UniRef50_A0R9T5 Transcriptional regulator, DeoR family n=74 Tax=...    60   5e-08
UniRef50_D1C4L3 Helix-turn-helix type 11 domain protein n=1 Tax=...    60   6e-08
UniRef50_C6PB22 Putative uncharacterized protein n=1 Tax=Thermoa...    60   8e-08
UniRef50_C4RGC2 Putative uncharacterized protein n=1 Tax=Micromo...    60   9e-08
UniRef50_C8XGJ6 Helix-turn-helix type 11 domain protein n=1 Tax=...    60   1e-07
UniRef50_C0ZIU8 Putative uncharacterized protein n=2 Tax=Bacilla...    59   1e-07
UniRef50_A1SPT5 Helix-turn-helix, type 11 domain protein n=2 Tax...    59   1e-07
UniRef50_D0GJW0 HTH domain superfamily n=1 Tax=Leptotrichia good...    59   1e-07
UniRef50_B1HUW4 YobV n=2 Tax=Bacillaceae RepID=B1HUW4_LYSSC            59   1e-07
UniRef50_A6W4U4 Helix-turn-helix type 11 domain protein n=3 Tax=...    59   1e-07
UniRef50_D1CGQ4 Helix-turn-helix type 11 domain protein n=1 Tax=...    59   2e-07
UniRef50_A9AVG2 Helix-turn-helix type 11 domain protein n=1 Tax=...    59   2e-07
UniRef50_Q1VU46 Putative transcriptional regulator n=1 Tax=Psych...    59   2e-07
UniRef50_B0MGX9 Putative uncharacterized protein n=2 Tax=Clostri...    58   2e-07
UniRef50_B2PXP4 Putative uncharacterized protein n=1 Tax=Provide...    58   2e-07
UniRef50_C2SK93 Putative uncharacterized protein n=1 Tax=Bacillu...    58   2e-07
UniRef50_C4LIK8 Putative uncharacterized protein n=1 Tax=Coryneb...    58   2e-07
UniRef50_Q30U25 Putative uncharacterized protein n=1 Tax=Sulfuri...    58   2e-07
UniRef50_C6D6Y8 Helix-turn-helix type 11 domain protein n=7 Tax=...    58   3e-07
UniRef50_D2R1Q3 Helix-turn-helix type 11 domain protein n=1 Tax=...    58   3e-07
UniRef50_D1A246 Helix-turn-helix type 11 domain protein n=3 Tax=...    58   3e-07
UniRef50_B1YFZ6 Helix-turn-helix type 11 domain protein n=1 Tax=...    58   3e-07
UniRef50_Q82JJ5 Putative DeoR-family transcriptional regulator n...    58   3e-07
UniRef50_Q2S472 Putative DeoR-family transcriptional regulator n...    58   4e-07
UniRef50_C3JIV6 DeoR-family transcriptional regulator n=2 Tax=Rh...    58   4e-07
UniRef50_UPI000185D3A7 conserved hypothetical protein n=1 Tax=Ca...    57   4e-07
UniRef50_C5BNS8 HTH domain protein n=2 Tax=Gammaproteobacteria R...    57   4e-07
UniRef50_C3QKP9 Transcriptional regulator n=2 Tax=Bacteroides Re...    57   4e-07
UniRef50_C4Z6L6 Putative uncharacterized protein n=2 Tax=Clostri...    57   4e-07
UniRef50_D0L3I9 Helix-turn-helix type 11 domain protein n=1 Tax=...    57   4e-07
UniRef50_Q11UB6 Transcriptional regulator, DeoR family n=7 Tax=B...    57   4e-07
UniRef50_A5FLV0 Helix-turn-helix, type 11 domain protein n=3 Tax...    57   4e-07
UniRef50_D0LH85 Putative DeoR-family transcriptional regulator n...    57   4e-07
UniRef50_A8W027 Regulatory protein GntR, HTH n=1 Tax=Bacillus se...    57   5e-07
UniRef50_A4FF91 DeoR-family transcriptional regulator n=17 Tax=B...    57   5e-07
UniRef50_B9XP79 Helix-turn-helix, type 11 domain protein n=1 Tax...    57   6e-07
UniRef50_Q3JYW1 Putative uncharacterized protein n=2 Tax=Strepto...    57   6e-07
UniRef50_A4BKA3 Predicted transcriptional regulator n=1 Tax=Rein...    57   6e-07
UniRef50_C2C3S2 Transcriptional regulator n=1 Tax=Listeria grayi...    56   6e-07
UniRef50_A8FE45 Possible transcriptional regulator n=2 Tax=Bacil...    56   7e-07
UniRef50_Q03GJ9 Predicted transcriptional regulator n=7 Tax=Bact...    56   7e-07
UniRef50_UPI000185CDFC conserved hypothetical protein n=1 Tax=Ca...    56   7e-07
UniRef50_Q11X99 Transcriptional regulator, DeoR family n=2 Tax=S...    56   7e-07
UniRef50_C0ZA21 Putative transcriptional regulator n=1 Tax=Brevi...    56   7e-07
UniRef50_D1BRS2 Helix-turn-helix type 11 domain protein n=2 Tax=...    56   8e-07
UniRef50_Q12H80 Helix-turn-helix, type 11 n=7 Tax=Proteobacteria...    56   8e-07
UniRef50_C7NJB0 Predicted transcriptional regulator n=1 Tax=Kyto...    56   1e-06
UniRef50_UPI0001794C37 hypothetical protein CLOSPO_01499 n=1 Tax...    56   1e-06
UniRef50_C8X624 Helix-turn-helix type 11 domain protein n=1 Tax=...    56   1e-06
UniRef50_A4SCA2 Helix-turn-helix, type 11 domain protein n=7 Tax...    56   1e-06
UniRef50_C1I3X2 Putative uncharacterized protein (Fragment) n=1 ...    55   1e-06
UniRef50_A5TXA7 Possible transcriptional regulator n=2 Tax=Fusob...    55   2e-06
UniRef50_B1QLR3 HTH domain protein n=9 Tax=Clostridium RepID=B1Q...    55   2e-06
UniRef50_C1ZFR8 Predicted transcriptional regulator, COG2378 n=1...    55   2e-06
UniRef50_Q74H44 Putative uncharacterized protein n=1 Tax=Geobact...    55   2e-06
UniRef50_D2PY48 Helix-turn-helix type 11 domain protein n=6 Tax=...    55   2e-06
UniRef50_D2BDR8 Helix-turn-helix type 11 domain protein n=9 Tax=...    55   2e-06
UniRef50_A7GU32 Helix-turn-helix type 11 domain protein n=2 Tax=...    55   2e-06
UniRef50_UPI0001C30F15 Helix-turn-helix type 11 domain protein n...    55   2e-06
UniRef50_A6C2W1 GntR family transcriptional regulator n=1 Tax=Pl...    55   2e-06
UniRef50_D1CH46 Helix-turn-helix type 11 domain protein n=1 Tax=...    55   2e-06
UniRef50_UPI000051035F putative DeoR family transcriptional regu...    55   2e-06
UniRef50_B2A7V3 Helix-turn-helix type 11 domain protein n=1 Tax=...    55   2e-06
UniRef50_C8QWX3 Transcriptional regulator-like protein n=1 Tax=D...    55   2e-06
UniRef50_C9YTR3 Putative transcriptional regulator n=8 Tax=Strep...    55   2e-06
UniRef50_Q7MF56 Predicted transcriptional regulator n=10 Tax=Vib...    55   3e-06
UniRef50_B8CYA6 Helix-turn-helix type 11 domain protein n=1 Tax=...    55   3e-06
UniRef50_UPI0001C317F2 transcriptional regulator protein-like pr...    54   3e-06
UniRef50_A9DPV5 Transcriptional regulator, DeoR family protein n...    54   3e-06
UniRef50_Q65MX4 Putative uncharacterized protein n=2 Tax=Bacillu...    54   3e-06
UniRef50_B9DII5 Putative uncharacterized protein n=1 Tax=Staphyl...    54   4e-06
UniRef50_A6VRZ4 Helix-turn-helix type 11 domain protein n=1 Tax=...    54   4e-06
UniRef50_C1YQ17 Predicted transcriptional regulator, COG2378 n=2...    54   4e-06
UniRef50_A9WUI5 Transcriptional regulator n=1 Tax=Renibacterium ...    54   4e-06
UniRef50_Q1DCK6 Putative uncharacterized protein n=2 Tax=Cystoba...    54   4e-06
UniRef50_Q0S1T7 Probable transcriptional regulator, DeoR family ...    54   4e-06

>UniRef50_P52133 Uncharacterized HTH-type transcriptional regulator yfjR n=15
           Tax=Enterobacteriaceae RepID=YFJR_ECOLI
          Length = 233

 Score =  316 bits (810), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ
Sbjct: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
           SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP
Sbjct: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180
           SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL
Sbjct: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180

Query: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233
           DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE
Sbjct: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233


>UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providencia rettgeri DSM 1131
           RepID=UPI000197BF5E
          Length = 441

 Score =  264 bits (675), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M + E R+DRLA+RL++++SRL  GE+L++ +LA EFGVS RT++RD RERL YLD EY 
Sbjct: 217 MPKQEHRYDRLAIRLAILVSRLFMGESLNISQLAQEFGVSGRTVQRDLRERLRYLDTEYI 276

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119
            G+  LR A    +   D+L FA  + +A  FP LD +L++ LL   + SPC+I    P 
Sbjct: 277 DGHVSLRDARGPFRTNSDILRFAQITSVAHYFPVLDPKLLSVLLDNRQDSPCIIWNDPPR 336

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            +P     F  ++Q+I   R +  +        +AP RL+ H   WYL A  +  I VFT
Sbjct: 337 QAPELFGGFQVIVQSIIRNRLIRFLHRKHLQSSIAPYRLICHDGEWYLAAVSKDRIQVFT 396

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           L  I  +     +F RN  + R+++DP F++ALPHF +I   +
Sbjct: 397 LSAITDVVMTASSFARNRHIDRILQDPRFMRALPHFDYISGII 439


>UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SV45_YERFR
          Length = 229

 Score =  262 bits (669), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 90/223 (40%), Positives = 126/223 (56%), Gaps = 1/223 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M++    +DRLAVRL+LII RL  GE LS+  LA+EF VS RTLRRDF +RL+YLDLE  
Sbjct: 1   MSEVSMHYDRLAVRLALIIGRLFMGEGLSINALASEFNVSPRTLRRDFNQRLIYLDLEQV 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPV 119
            G  RL  +    +   D++ FA  + +A  FP LD +L++ LL  +  SP V+  A P 
Sbjct: 61  DGIYRLAKSHIGSRTDGDIIHFARVTHMAQFFPALDSKLLSVLLNKNVGSPYVVYHAPPK 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
             P+    F+R+ QAI     V L  +G     LAP RL+     WYLV EH   + VF 
Sbjct: 121 NPPALFGGFYRITQAIIDNVFVELSVQGNEYFNLAPYRLVYFDGYWYLVGEHNLTLQVFL 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           L  I  +      F + + +  L  +  FI+ALPHF+F+++ +
Sbjct: 181 LIHITDVTLTPRRFTKKEYITALTAEADFIKALPHFQFVRNLV 223


>UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteriaceae
           RepID=B1IPS8_ECOLC
          Length = 237

 Score =  258 bits (659), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 150/224 (66%), Gaps = 2/224 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+QAERR+DRL+VRLSLIISRL+AGETL++RKLAAEFGVS RTL RDFRERL+YLDLEYQ
Sbjct: 1   MSQAERRYDRLSVRLSLIISRLLAGETLNMRKLAAEFGVSERTLHRDFRERLIYLDLEYQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVIAPANPV 119
            G CRL T G +       + FA +SG   LFP +D  LVN+LL   D SPC+I      
Sbjct: 61  DGCCRLLTGGRQEIREEAAMQFARQSGTGALFPDMDHHLVNSLLSSKDSSPCLIWHPGAS 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            + S    F RL++A++  R+VTL+A+G RC+ LAP RL+     W+LV EH   I VF 
Sbjct: 121 VTSSRPGIFTRLVRAVSENRKVTLLADGCRCDNLAPYRLIFSTGGWFLVGEHLARITVFA 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
           L  +H +    ETF  +    R++  P F+QALPHF  + HSLL
Sbjct: 181 LHTVHSVTFHAETFTPDGHFTRILSHPDFLQALPHFH-VFHSLL 223


>UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providencia rettgeri DSM 1131
           RepID=UPI0001C349A5
          Length = 225

 Score =  257 bits (656), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+ +  RHDRLA RL+ IIS+L  GET+ +  L+ E  VS RTLRRDF ERL YLDLEY 
Sbjct: 1   MSTSVSRHDRLASRLAFIISQLFRGETVYLSALSEELNVSTRTLRRDFNERLQYLDLEYH 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM-CDESPCVIAPANPV 119
            G  RL  +    +   D+L FA  + +  LFP LDR+L+  LL    +SP ++    P 
Sbjct: 61  QGGYRLAASQRPFRTDKDILRFAAITHITSLFPALDRKLLTVLLDPTIDSPFIVYHTPPE 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
             PS    F+ L QAI  RR +    +G+    +AP +L+ +   WYL A+   HI VF 
Sbjct: 121 QRPSLFGGFYILTQAIVKRRLLQFAHQGKNITNVAPYKLIYYHGHWYLAADIAQHIHVFD 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           +  +  +      FR  + L + + +  FIQALPH+++IQ  +
Sbjct: 181 VMALQDVVMTARGFRYREDLNQRLCEEAFIQALPHYQYIQSLV 223


>UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enterobacteriaceae
           RepID=C2LK81_PROMI
          Length = 235

 Score =  255 bits (651), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 94/229 (41%), Positives = 135/229 (58%), Gaps = 2/229 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M Q  R++DR+AVRLS +I+RL+AGE+L +  LA EF VS RTL+RD RERL YL +E +
Sbjct: 1   MFQTNRKYDRMAVRLSALIARLMAGESLVLSCLAQEFNVSERTLQRDLRERLAYLGVEGR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCVIAPANPV 119
            G  RL     +     DVL F  + G+  LFPGLD RL+  LL     +PC+I      
Sbjct: 61  QGCYRLPINTLKAYRDKDVLTFVKQIGMTRLFPGLDSRLLGLLLTQQPHAPCLIWHHAHK 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            S   A  F++L+ AIT ++ ++L+   RR   L P +L+  +  WYL+AE+   + V  
Sbjct: 121 ISALHADHFYQLVYAITSKQSISLLTPERRFNPLQPYQLIYREGQWYLLAEYYQQVHVLL 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228
           L++I  +QPL   F    ++ +L +   FI ALPHFR I   +LT +P+
Sbjct: 181 LEDIQQVQPLNTPFTPKHAVMQLSQQNSFIAALPHFRLIS-QVLTSLPS 228


>UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia coli
           RepID=Q4FBD3_ECOLX
          Length = 226

 Score =  254 bits (650), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 136/226 (60%), Gaps = 3/226 (1%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+    RHDRLAVRLSLIISRL+ GE+LS++ L+ EFGV+ RTL+RDF +RL++LDLEY+
Sbjct: 1   MSDNRSRHDRLAVRLSLIISRLMTGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119
           +G   LR   S    +P++L F   +G+A + P  + RL+  L    E SPC+I    P 
Sbjct: 61  NGRYSLRRQSSP-GAIPEMLSFIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPD 119

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            + +    F +LI AI     ++L+AE R    L PCRL+ +  +WYL+A  +G + VF 
Sbjct: 120 ITATFPECFSQLILAIRQCIHISLMAE-RWYPSLEPCRLIYYSGSWYLIALQKGKLQVFP 178

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
           L +I  +    E F R   +  LV +  FI ALPHF FI   + TF
Sbjct: 179 LADIKSVSLTSERFERRGHIHNLVAEERFISALPHFSFIHKLINTF 224


>UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherichia coli 83972
           RepID=C2DJQ1_ECOLX
          Length = 238

 Score =  243 bits (621), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 135/226 (59%), Gaps = 2/226 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M      HDRL+VRLS+IISRL+AGE+L ++ LA EFGVS RTL+RDF++RL++LDLE++
Sbjct: 12  MKTQHDHHDRLSVRLSVIISRLLAGESLELKVLADEFGVSERTLQRDFQQRLIHLDLEHR 71

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL-LMCDESPCVIAPANPV 119
           SG  RL    +  + +P+   F   SG++G+ P  +R+L+  +      SPC+I      
Sbjct: 72  SGSYRL-IRQTGREHLPNTFAFIRNSGISGIIPAQNRKLIRLIASNSGVSPCLIGHGALS 130

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
              +    F +L +AI   R VTL+  G+  E +AP RL+   + W+LVA    ++ VF 
Sbjct: 131 SPVTQTACFLKLAEAIRDYRAVTLLVNGKSYEAVAPRRLIFQSKNWFLVATRTRNLQVFR 190

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
           +++++ +  L  +FRR   L  L     FI ALPHFRFI   + TF
Sbjct: 191 MEDVNAVTVLDTSFRRKPELDALTASEEFISALPHFRFISDVIQTF 236


>UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PWJ3_PROST
          Length = 231

 Score =  243 bits (621), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M + + RHDRLA+RLSLIISRL+AGETLS+R LA EFGVS RT++RD  ERL +LDL   
Sbjct: 1   MKKQDTRHDRLAMRLSLIISRLLAGETLSLRALANEFGVSERTIQRDLHERLSHLDLVSN 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCV-IAPANP 118
                L  +   +   PD+  F  + GLA  FPGL R+ VN L+  D   PC  ++P   
Sbjct: 61  EAGYCLS-STLTVWRTPDLFSFLQKVGLASYFPGLTRKTVNHLVQSDLHFPCFMLSPFET 119

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
             S      F++LIQAIT    V +  +      L P RL ++++ WYL+     ++ V 
Sbjct: 120 EFSSCDGECFYQLIQAITQHFIVQVKQKEGIYLHLEPYRLALYERAWYLIGYASPYVRVI 179

Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
            L  I  +   +  FRR   +CRL   P FI ALPHF FIQH + 
Sbjct: 180 PLHHIQSVHITEIPFRRRKEICRLSSTPEFISALPHFEFIQHVIN 224


>UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Providencia
           RepID=B2PW39_PROST
          Length = 229

 Score =  241 bits (615), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M Q   RHDRL  RL+ I++ L  GETLS R LAAEF VS+RT++RDF ERL+YLD+E Q
Sbjct: 1   MAQPSPRHDRLVHRLAYILTHLFKGETLSPRVLAAEFNVSLRTIQRDFHERLVYLDIEQQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC--DESPCVIAPANP 118
               RL    S ++   D+L FA  + +  LFP LDR+L++ LL      SP V+  A P
Sbjct: 61  EEGYRLAGGQSALRTDSDILQFAQITDITPLFPVLDRKLLSLLLSRHAQGSPYVVYHAPP 120

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
              PS    F  + QAI   + +     G+    +AP +L      WY+     G I   
Sbjct: 121 KALPSVYGGFALITQAILDNQFIHYEIGGKTTHWVAPYKLTYFNGHWYVCGVMNGLIHAV 180

Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
            L  +  +      F+ + +L + + +  FIQALPHF++I+  L
Sbjct: 181 ELLHLRDVGLSARHFKPDTALLQRMTERAFIQALPHFQYIKGIL 224


>UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 Tax=Citrobacter sp.
           30_2 RepID=C1MBC8_9ENTR
          Length = 303

 Score =  236 bits (603), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 98/217 (45%), Gaps = 10/217 (4%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
            RHD+L  RL LI++RL  GE+L++R LA EF V  +T+RRD  +RL YL+L  Q     
Sbjct: 2   DRHDKLGYRLGLILTRLNNGESLTIRGLADEFNVCEKTIRRDLTKRLAYLNLHRQGKQYW 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
           L       +   D+  F    G+ GLFP  + RL+N LL   E+   +    P  +    
Sbjct: 62  LPKGILGQRSNTDLRRFTRILGIEGLFPRWEDRLLNVLLGDTENNPFLIKKRPYENCGAF 121

Query: 126 LSFWRLIQ-AITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIH 184
           +S    I  AI    ++    + +      P R++  +  WYL A HEG +  F +  + 
Sbjct: 122 MSTLNAISGAIQASLKIAFTYKEKMFSATEPYRVVNDRGLWYLAARHEGTLKSFAVSTMT 181

Query: 185 LIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS 221
            +Q     F           DPV  Q + H   I + 
Sbjct: 182 HVQVSNMRFSP---------DPVVSQQVEHAESIWYG 209


>UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax=Proteobacteria
           RepID=A1VQX0_POLNA
          Length = 301

 Score =  234 bits (597), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 7/215 (3%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGY 63
               HD L  RL+LI+ +L  GE L  + LA EF V++RT++RD  ER  YL LE   G 
Sbjct: 5   TAAHHDTLVYRLALILVKLNQGEKLDPQALADEFSVNLRTIQRDLNERFAYLPLEKTDGL 64

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123
             L           DV  FA  +G+ GLFP L    +  +        ++   +     +
Sbjct: 65  YHLHPTFLGKLSTRDVERFASLAGVRGLFPSLSDDFLRDIFDTGIQASLLVKGHNYEHLA 124

Query: 124 GAL-SFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
           G   +F +L QAI  RR +          +    + P +L+ H+  WYL A+  G +  F
Sbjct: 125 GKEANFRQLEQAIVTRRSIAFEYRKDEGIKLYADVEPYKLMNHKGIWYLAAKDGGKLKTF 184

Query: 179 TLDEIHLIQPLQETFRRNDSLCR--LVEDPVFIQA 211
           +   I  +  L   F  + S+ +  L ED +++  
Sbjct: 185 SFARIERLVLLNAIFLPDPSVDKTLLEEDGIWLSG 219


>UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax=Acidovorax
           delafieldii 2AN RepID=C5SZH4_ACIDE
          Length = 306

 Score =  224 bits (572), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M       D +A RL+ I+ RL  GE L    L  EFGV++RT++RD  +R  +LDL  +
Sbjct: 1   MPTPSDPRDTIAYRLTEILRRLNEGEALDPHALVEEFGVNLRTIQRDLNQRFAFLDLVKK 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
            G   +  +      + DV  FA  +GL GL P L    +  +L       ++   +   
Sbjct: 61  DGRYTIDRSRLGTLTLHDVQRFASLAGLQGLHPRLSTGFLRDILDTRLQSALLIRGHNYE 120

Query: 121 S-PSGALSFWRLIQAITGRRRVTLIAEG------RRCERLAPCRLLIHQQTWYLVAEHEG 173
              +    F +L QA    R V+           +  + + P +L+     WYL A   G
Sbjct: 121 DLHNKESEFNQLKQAAQQHRVVSFEYRKPDSTAAKLVDDIRPYKLVNQDGIWYLAATDAG 180

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLV--EDPVFIQA 211
               + +  I  +  L +TF  + ++ + +  ED V+++ 
Sbjct: 181 KPKSYAVSRIERLLVLADTFTPDPAVLQQIANEDSVWLKT 220


>UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Campylobacter
           RepID=Q5HVJ9_CAMJR
          Length = 290

 Score =  219 bits (559), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
           + +D+L++RL  I+S+   GE+LS ++LA EF V  RT++RD  ERL ++ ++ ++G   
Sbjct: 2   KEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRYV 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
           L +         D+  FA  SG+A L+P LD+  +  LL    +  ++            
Sbjct: 62  LESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQKVDYE 121

Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185
           L F  L  AI     +    + ++  ++ P +L+ ++  WYL+ +    +  F LD+I  
Sbjct: 122 L-FKDLSVAILKHNVLNFFYK-KKERQIKPYKLVNYKGIWYLLGDENDKLKHFNLDKISK 179

Query: 186 IQPLQETFRRNDSLCRLVEDPVFI 209
           ++   E F  N+ L   +++   I
Sbjct: 180 LRTKNENFIPNEKLQEQIQNDPNI 203


>UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibrio splendidus 12B01
           RepID=A3UTJ4_VIBSP
          Length = 296

 Score =  216 bits (551), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 2/213 (0%)

Query: 3   QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSG 62
           +  + HD LA RL +I++RL  GE L + +L+ EF VS RTL+RDF ERL YL ++    
Sbjct: 2   RRMKEHDTLAKRLGIILTRLNTGEKLYLEELSREFRVSERTLQRDFNERLNYLPIQRDGA 61

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
              L       Q   +V +   + G   LF G    L N +L    +P  +     +   
Sbjct: 62  CYFLDPQALGRQSNNEVSLLLMKMGFDTLFSGK-HYLSNGVLNNKSTPPFLFKNPQIEDI 120

Query: 123 SGALS-FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLD 181
           S   S F +LI++I  +  +     G+  +   P RL+  +  WYL   H   +    + 
Sbjct: 121 SKNASVFEKLIESIQRKSTIGFTCNGKSYDEFHPYRLVNDRGHWYLAGTHRNRLESLRVA 180

Query: 182 EIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214
           +I  +   ++ +  + ++   +    +   LPH
Sbjct: 181 KIRELVRYEDKYSPDLNVEYKLTGRGYKDELPH 213


>UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax=Campylobacter
           RepID=B9CZE1_WOLRE
          Length = 288

 Score =  213 bits (542), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 1/202 (0%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
           R HD++  RLS I++RL +G  L + +L  EF V+ RT+ RDF ERL  L ++ ++G   
Sbjct: 2   RSHDKIGFRLSRILTRLNSGARLGIDELVEEFNVNKRTILRDF-ERLSILPIQKENGKYF 60

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
           L           D+  FA   G   LFP LD R ++ +L    +   +       S   +
Sbjct: 61  LEEYALGKLGFKDIKAFAALIGARSLFPELDDRFISDVLNEKLNKAYLIKNQGFESIQIS 120

Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185
              +  + A   + R        +  +L P +L+ +   WYL+A+ EG +  FTL +I  
Sbjct: 121 RDDFEAVSAAVIKNRTLECEYNGKERKLNPYKLINNSGIWYLLADDEGKLKNFTLSKIKR 180

Query: 186 IQPLQETFRRNDSLCRLVEDPV 207
           I+   +TF  N    + +E   
Sbjct: 181 IKIKGDTFAANAEFLKRIEKND 202


>UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-turn-helix
           domain-containing protein n=3 Tax=Pasteurellaceae
           RepID=B8F3U1_HAEPS
          Length = 295

 Score =  203 bits (516), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 11/212 (5%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-GYC 64
           +++  LA RLS I+S+L  G+ + + +LA +FGVSVRT++RD ++RL +L+ E     + 
Sbjct: 2   QKNTVLAQRLSEILSQLNQGKRIDINQLAEDFGVSVRTIQRDIKDRLAFLEWEESGPRHY 61

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
           ++      +    D+  FA  + ++ LFP +DR      L    +  V            
Sbjct: 62  KINRYKLGILSQQDISRFALFASISDLFPKVDRDFYQEKL----TDSVKVKGFQYEDIRH 117

Query: 125 ALSFWRLI-QAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
             + ++LI QAI   + +  + +       +  ++AP  L+     WYL+   E     F
Sbjct: 118 LDNEFQLIKQAIEAHKFIDFLYKKSGQIDGKFYKIAPYSLINKNGIWYLIGTDEDKQKTF 177

Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210
              +I +++ L ETF  N  L   ++    I 
Sbjct: 178 CFTQITMLKMLDETFEPNQQLQEEIKSNDSIS 209


>UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobacteria
           RepID=Q1QC98_PSYCK
          Length = 300

 Score =  195 bits (497), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-EYQSG 62
             R+H+RLA RLS II RL  GE L++ +LA  + VS+RTL+RDF++RL  L+L E    
Sbjct: 2   KLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGPQ 61

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
           + RL  +      + D+  FA  + +  L P +DR+     L    +  +        + 
Sbjct: 62  FYRLHPSNIGYLDIADIQRFASFASVQDLLPKIDRQFFQEKL----NQSIFVKGFAYENI 117

Query: 123 SGALSFWRLI-QAITGRRRVTLIA--------EGRRCERLAPCRLLIHQQTWYLVAEHEG 173
           S     +R I QAIT  + +               +   L P  LL     WY+V    G
Sbjct: 118 SERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPYHLLNKNGIWYVVGRLHG 177

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207
               F   ++  +    ETF+ ++ + +   D  
Sbjct: 178 QTRTFCFTQMTQLHINTETFQCSEDIKKETLDTD 211


>UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter RepID=D0SAP6_ACIJO
          Length = 301

 Score =  194 bits (493), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 5/226 (2%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M +    H+RLA RL+ I+++L  G  L V +LA EF VS RT+ RDF     YL L   
Sbjct: 1   MKRKASTHERLAERLANILTKLNTGYQLGVAELAHEFQVSTRTIERDFDRLNTYLPLFQD 60

Query: 61  S--GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP 118
                  L         + D+  FA  SG++ L+P LD   +  LL    +    A    
Sbjct: 61  EYTKKYFLDPVYLGRFKLQDIQNFAQLSGISELYPSLDMTFLRGLLDERANQVFSAKGYY 120

Query: 119 VPSPSGA-LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
             +       F     AI  R++++ I        + P RL+ HQ +WYL A     +  
Sbjct: 121 YENAQQFAEHFQVFAGAIHKRQKISFIYND-LLRHVDPYRLIHHQGSWYLAAAVADELRA 179

Query: 178 FTLDEIHLIQPLQ-ETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           + L +I  +   + E F  +  +   +E    I    H + ++ S+
Sbjct: 180 YRLSKIDQVVVHESELFDHHLEVLTQLELSEGIWFAKHKQTVKISV 225


>UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibrio
           RepID=D2YQU2_VIBMI
          Length = 290

 Score =  192 bits (488), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 91/202 (45%), Gaps = 5/202 (2%)

Query: 7   RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66
           + ++LA RLS I+SRL AGE LS+  L  EFGV  RT+ RDF  RL +L +E + GY  L
Sbjct: 3   KSEKLAYRLSQILSRLYAGEKLSLIDLEQEFGVHERTVLRDFN-RLAFLPIEREEGYYYL 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126
           +            L      G+  LFP  DR+ +   L    +P ++    P+   +   
Sbjct: 62  KQLDHRNPKAHKALHALSNMGIDKLFP--DRKTMTQALNHK-TPSILFRHIPIEDSARFR 118

Query: 127 SFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHL 185
               LI  AI  R  +TL    RR  ++ P +L+  +  WYL+A        F + EI  
Sbjct: 119 DTLILIADAIHQRNTLTLTFHNRRYHQMEPYQLINERGYWYLIAAQRTQPHSFRVAEIAE 178

Query: 186 IQPLQETFRRNDSLCRLVEDPV 207
           I    + +  +  L   +    
Sbjct: 179 IIRHDDIYTPSPILSEKLTREE 200


>UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Tax=Acinetobacter
           RepID=B7GVE1_ACIB3
          Length = 303

 Score =  188 bits (479), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 14/220 (6%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY--LDL- 57
           M ++ + H+RLA RL+ II+RL  GE L   +L  +FGV+ +T++RD  ERL    L L 
Sbjct: 1   MVKSLKAHERLAERLANIITRLNRGEYLDSNELTLDFGVTKKTIQRDI-ERLSIAGLPLV 59

Query: 58  --EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
             E    +  L           D+  FA  SG+ GL+P LD   +  LL    S    A 
Sbjct: 60  IDEKTRKFY-LGANYVGKISPQDIQNFAQLSGITGLYPNLDLSFLRELLDSRSSEVYAAK 118

Query: 116 ANPVPSPSGALSFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGH 174
                + +     ++LI +AI  R+++T     +    + P +L+ H  +WYL A     
Sbjct: 119 GYFFENTTHFSELFKLIREAIQDRKQITFQYNSKL-RTVQPYKLIHHHGSWYLAAVSNDQ 177

Query: 175 IA--VFTLDEIH---LIQPLQETFRRNDSLCRLVEDPVFI 209
           +    + L  I     IQ   + F  +  + + +++   I
Sbjct: 178 LQLRAYRLSRIGKDCQIQYHLDHFEPDIEIIKQLKNEESI 217


>UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 Tax=Vibrio parahaemolyticus
           AQ4037 RepID=UPI0001BC6CCB
          Length = 286

 Score =  184 bits (467), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 16/203 (7%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64
             + ++LA+RL  I++RL  GE LS  +L A++ VS +TLRRDF ERL+   +   +   
Sbjct: 2   SDKSEKLALRLGDILTRLFMGEVLSPEQLVADYQVSEKTLRRDFNERLVNAPIIRTNEGY 61

Query: 65  RLRTAGS--EMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
           RL              VL     +GL+ L P       N       +P +    NP    
Sbjct: 62  RLDPVTRNNGNANTNKVLH---DTGLSALLP-------NHYKFNGHTPVLF--KNPRSES 109

Query: 123 SGALS--FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180
            G     F +L + IT    + L   G+  E   P RL+  +  W+L A +   +  + L
Sbjct: 110 IGKFDALFRQLTEVITTHSVIDLTYNGKTFESAHPYRLVNDRGIWFLAATYCDQLHSYRL 169

Query: 181 DEIHLIQPLQETFRRNDSLCRLV 203
             I  I   ++ ++ +  +   +
Sbjct: 170 PNISRIHRREDKYKPSQKVHEEI 192


>UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QCN2_SULNB
          Length = 307

 Score =  183 bits (464), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 15/217 (6%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-------L 57
           ++ +D++  RL++I+SRL   E LSV +LA EF VS RT++RDF ERL+           
Sbjct: 4   KKDYDKILTRLTVILSRLYDREALSVTELAEEFNVSGRTIQRDFNERLISFPIYQDKKKW 63

Query: 58  EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117
           + Q G+   +    E Q+V D++       + G F     +L++ +   D +P  I    
Sbjct: 64  KMQDGFRIEKIKSIEEQLVLDIIE-KMTESIGGKFATTSHKLLSKIKNEDFNP--IYTKL 120

Query: 118 PVPSPSGALSFWRLIQ-AITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEHE 172
            +   S      +LI+ AI  +  +    E  R       + P +++ ++  WYLVA  +
Sbjct: 121 NIEDISDRFDDIQLIEKAIKDKTELECSYENEREGTFRANIQPLKIVNYEGFWYLVAFKD 180

Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209
           G +  + +  +  IQP  +TF  ++ +  L+++ + I
Sbjct: 181 GTVQKYYIKTLSNIQPTAKTFTVDEDIEELLKNSINI 217


>UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 Tax=Vitreoscilla
           sp. RepID=O85446_9NEIS
          Length = 190

 Score =  179 bits (454), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-EYQSGYCRLRT 68
           +LA RLS I+  L +G+ LS   LA ++GVS++T++RD  +RL  L   E    +  L T
Sbjct: 7   KLAERLSAILVDLHSGQRLSAHGLAEKYGVSLKTIKRDLGQRLDNLPWLETGPQFYCLDT 66

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG-ALS 127
              +   +  +  F   + +  LFP  D+  ++ LL       ++       +  G    
Sbjct: 67  QQMQHTNLETLTRFCWFAAIKELFPPKDQAFLDNLL----KDHILVKGLKYENIQGLKQQ 122

Query: 128 FWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDE 182
           F +L QAI     V         +  +   +AP  L+     WY++   +G    +   +
Sbjct: 123 FLQLEQAIDLYHMVYFDYCKINEKQAKPYTIAPYGLVNKNGIWYVIGLDQGREKTYNFVQ 182

Query: 183 IHLIQP 188
           I  +  
Sbjct: 183 ISNVVF 188


>UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PXB7_PROST
          Length = 286

 Score =  167 bits (423), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 83/198 (41%), Gaps = 12/198 (6%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGS 71
            VRL+ II        +   +LA+ F VS RT+ RD     + L+ +  S      T   
Sbjct: 9   GVRLATIILEAYLYGEVDKYELASRFKVSERTIYRDLNSLNLILEHKGNSK-YGFSTVVE 67

Query: 72  EMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL---SF 128
             +M+          G+    P   +  + ++    ++  V+   N +     +     +
Sbjct: 68  YYKMISFF-------GIDKYLPDFSQSFLKSIPETIQNRSVLIKFNGIEHKIKSYLKTHY 120

Query: 129 WRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQP 188
            R+  AI  +R   ++ + +    + P +L+ H   WYL A  EG +  F+L+ I  +  
Sbjct: 121 ERIRYAIDNKRECHILYKSKN-RTIYPYKLICHNTIWYLNAIEEGKLKSFSLNRIEWLDV 179

Query: 189 LQETFRRNDSLCRLVEDP 206
            ++TF  ++++  ++ + 
Sbjct: 180 SKKTFLPDNNIVNMLMES 197


>UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibrio shilonii AK1
           RepID=A6D7H7_9VIBR
          Length = 255

 Score =  153 bits (387), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 35  AEFGVSVRTLRRDFRERLMYLDL-EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFP 93
            E+GVS +TLRRDF +RL+   + +   GY       S       +L     SGL+ L P
Sbjct: 2   EEYGVSEKTLRRDFNQRLINTPIMKTAHGYQLENQLNSSYVTTKRIL---DDSGLSSLLP 58

Query: 94  GLDRRLVNALLMCDESPCVIAPANPVPSPSGALS--FWRLIQAITGRRRVTLIAEGRRCE 151
                          SP  I   NP    +      F ++  AIT R  + L  +GR   
Sbjct: 59  PKH--------NISTSPSTILFKNPRIEDTHKFDGVFTQINSAITSRTIIDLTYQGRLIT 110

Query: 152 RLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201
           ++ P RL+  +  WYL     G +  + L ++  I   ++ +  +  +  
Sbjct: 111 QVHPYRLVNDRGIWYLSGVASGQLYSYRLAKVSQIHTAEDKYYPDPKVLE 160


>UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PXP5_PROST
          Length = 146

 Score =  153 bits (386), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M    R++DR+A+RLS +I+RLVAGE L +  LA EF V  RTL+RD RERL YL +EY+
Sbjct: 1   MLPTNRKYDRMAMRLSALITRLVAGENLVLTDLACEFNVPARTLQRDLRERLAYLGVEYR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-LDRRLVNALLMCDESPCVIAPANPV 119
               RL     +     DVL F  + G+  LFPG   R L   L     +P +I      
Sbjct: 61  KRVYRLPLNTLKAYRDKDVLTFVKQMGMTRLFPGLDSRLLNLLLSQRQHAPYLIWHHAHR 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA 145
            S   A  F++L+ AI G + +TL  
Sbjct: 121 TSAEHAEHFYQLVYAIIGYQHITLPY 146


>UniRef50_C9QRE5 Transcriptional regulator protein-like protein n=1
          Tax=Escherichia coli DH1 RepID=C9QRE5_ECOD1
          Length = 285

 Score =  113 bits (282), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
          MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ
Sbjct: 1  MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60

Query: 61 SG 62
          SG
Sbjct: 61 SG 62


>UniRef50_A4W669 Regulatory protein, DeoR n=3 Tax=Enterobacteriaceae
           RepID=A4W669_ENT38
          Length = 303

 Score =  110 bits (275), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 71/207 (34%), Gaps = 7/207 (3%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           MT   R   R A RL  I+  L     +    L  +F ++ RT+ RD    L  +     
Sbjct: 1   MTTPARS--RSAERLVDILMELHINGVVHRSDLMQKFKITERTVYRDLNA-LSPIVQHAG 57

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
           +G  RL  A    +        A+       FP         L    E   ++   N   
Sbjct: 58  NGQYRLIHATPSSRGQGLHNAVANLLNADSFFPDRGAAFWQNLESRVEENHILILNNDAE 117

Query: 121 SPSGAL---SFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
                        + ++I  R    +  + +    + P +L+  +  WYL A   G +  
Sbjct: 118 HTVQKDIRLYLTAIEKSIKNRHVCQITYKDKT-RSVNPYKLINKKNIWYLQATENGRLKS 176

Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVE 204
           F+L +I      +ETF  +     L+E
Sbjct: 177 FSLSQISWFDIQKETFILDPHTQELLE 203


>UniRef50_B9KCA9 Putative uncharacterized protein n=1 Tax=Campylobacter lari RM2100
           RepID=B9KCA9_CAMLR
          Length = 306

 Score = 94.2 bits (233), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 9/199 (4%)

Query: 14  RLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTA-GS 71
           RL ++  +LV  E  +++++LA E  VS +T++RD +     + L       R+ T+  +
Sbjct: 15  RLEVLYEKLVKSENGITIKELAQELNVSAKTIKRDMQGVFEPMGLIKNGRKWRIDTSKDT 74

Query: 72  EMQMVPDVLIFAHRS---GLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSF 128
           + Q    +++    +        F      L++ L     +P   +            +F
Sbjct: 75  QEQDDEKIILEVLDTMAKSAGNSFYAKAHPLLSKLSQNISNPIHTSLDAEKLEEKDLNNF 134

Query: 129 WRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEH---EGHIAVFTLDEIHL 185
             L QAI  + ++    E +   +  P +L      WYL+A           F L  I  
Sbjct: 135 QILEQAINTKTQIVFKYENKLF-QAKPLKLAFFSGFWYLLAFDMKKRDIFKKFYLKNIQN 193

Query: 186 IQPLQETFRRNDSLCRLVE 204
           I   QE F+ ++SL   ++
Sbjct: 194 ITLTQEHFQTDESLEIKLQ 212


>UniRef50_A8S168 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S168_9CLOT
          Length = 302

 Score = 91.9 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 70/202 (34%), Gaps = 21/202 (10%)

Query: 18  IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRTAGSE 72
           I+  L+  E ++  +LA EFGVSVRT+ RD          +Y+    + G   L     +
Sbjct: 9   ILYILLNNERVTAPELAEEFGVSVRTIYRDIDTMSAAGIPIYMQGGRKGGIYLLEGYRLD 68

Query: 73  MQMVPDVLIFAHRSGLAGL----FPGLDRRLVNA--LLMCDESPCVIAP----ANPVPSP 122
              +           L GL    +P +D  L+    L M  +   +              
Sbjct: 69  KVTLSKTEQAEILLALQGLGAVQYPDIDPVLLKLGALFMSQDRDWIDVDLTRWGTAETVH 128

Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE--HEGHIA 176
                F  L +AITG RR+       +       + P +L+   + WYL           
Sbjct: 129 RDKELFSILRKAITGLRRIHFEYYSAKGEMTVRTVEPAKLIYRCRAWYLAGYCLMRQEPR 188

Query: 177 VFTLDEIHLIQPLQETFRRNDS 198
           VF L  +      +E F  +  
Sbjct: 189 VFRLSRMKKTGLTEELFEYSPE 210


>UniRef50_Q0AX84 YobV n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen
           RepID=Q0AX84_SYNWW
          Length = 311

 Score = 85.0 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 76/212 (35%), Gaps = 30/212 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSG---------Y 63
           RL  II  L+  E +  ++LA  FGVSVRT+ RD     L  + +    G          
Sbjct: 5   RLISIIIVLLRRERVQAKELAEMFGVSVRTILRDVDTINLGGIPIITYQGVNGGISIAEG 64

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-----LDRRLVN-------ALLMCDESPC 111
            RL  +      +  ++      G+A   P      L  +L N        LL       
Sbjct: 65  YRLDKSVLSAGDMATLIS--TLKGVAASIPDSRFDILAEKLKNPLSTSQLELLDLKSRQM 122

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167
           +I  +    +         L QAI   R +          R   ++ P  LL+  Q+WYL
Sbjct: 123 IIDLSPWGTNEQLKGKITLLRQAIENYREIEFAYIDAAGTRSIRQVEPYALLLKGQSWYL 182

Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRND 197
            A         +F L  I  +Q +  T++  +
Sbjct: 183 FAWCLLRQDFRLFKLIRIKNLQLVNITYQPRE 214


>UniRef50_C9AAC3 Transcriptional regulator n=3 Tax=Enterococcus casseliflavus
           RepID=C9AAC3_ENTCA
          Length = 302

 Score = 84.2 bits (207), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 17/199 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  +I  L+  E  +  +LA +F VS RT+ RD          +Y +     G   L +
Sbjct: 5   RLFGLIYHLLNHEKATTSELAKQFEVSTRTITRDINTLSSIGVPIYTETGRNGGVYLLSS 64

Query: 69  AGSEMQMVPDVLI---FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS---- 121
              +  ++ +           G+  L P +  + +  L    + P          +    
Sbjct: 65  FVLDKVLLSEEERKNLLLALKGIRQLTPQISGQSLAKLQSLFKQPDADWLEVDFSTWHRR 124

Query: 122 PSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGH--IA 176
            +G  +F  L ++I     +T      +G +     P +LL   Q WYL A  +      
Sbjct: 125 ENGNDTFDLLKKSILTNHVITFDYISKQGLQKRICQPYKLLFRSQAWYLQAFDQQKNAFR 184

Query: 177 VFTLDEIHLIQPLQETFRR 195
            F +  +  +    + F  
Sbjct: 185 TFKISRMSQVHVTDQHFFP 203


>UniRef50_C6SP18 Putative uncharacterized protein n=2 Tax=Streptococcus mutans
           RepID=C6SP18_STRMN
          Length = 307

 Score = 83.0 bits (204), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 88/237 (37%), Gaps = 19/237 (8%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLE----YQSGYCRLR 67
            RL  I+S L     ++ ++LA +F VS RT+ RD        + +        G+  ++
Sbjct: 4   ERLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGFSLMK 63

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDR----RLVNALLMCDESPCV----IAPANPV 119
               + +++         S L GL     +     L+  LL   ES  +    I  ++  
Sbjct: 64  NYQIDKRILSKADTKNLYSALKGLQSIKQQPELIALIAKLLPEGESNPLADYDINFSSWY 123

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174
                      L +AI G+  V L      GRR  ++ P +L+     WYL A       
Sbjct: 124 TDSLIQKKIEILQEAIEGKSCVLLDYISSSGRRKRKIEPYQLVFKDSAWYLHAFCHKRQA 183

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ-ALPHFRFIQHSLLTFVPADS 230
             +F L  +  +  L+E F         ++   +   +L         +LT+ P D+
Sbjct: 184 FRLFKLRRMASLTLLEEKFTGRPYPALTLKSTAYSDFSLEPVEGYDKVVLTYHPEDA 240


>UniRef50_C9LWR7 HTH domain protein n=1 Tax=Selenomonas sputigena ATCC 35185
           RepID=C9LWR7_9FIRM
          Length = 308

 Score = 83.0 bits (204), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 29/220 (13%)

Query: 3   QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLM----YL 55
           Q +   D  + RL  +  RL  GE LS R+LA ++ VS +T++RD    RE L     YL
Sbjct: 2   QTDTHADNRSYRLLDLYKRLQQGEALSKRELADQYRVSEKTVQRDIEGLREYLAGEQSYL 61

Query: 56  DLEY--QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-LDRRLVNALLMCDES--- 109
           ++ Y  ++G  R+    +E     +V         +  FP  + +RL+  LL        
Sbjct: 62  EVVYDKEAGGYRISRESAEGLQPEEVFAVCKILLESRPFPKAVMQRLLGKLLSQVSREKR 121

Query: 110 ----PCVIAPANPVPSPSGALS----FWRLIQAITGRRRVTLIAEG----RRCERLAPCR 157
                 +    +    P          WRL  AI  +R  +              + P  
Sbjct: 122 DVVEKLIAQETHHYTEPQHGRDVIPALWRLAAAIREQRITSFSYTRLDGVCHERVVKPVA 181

Query: 158 LLIHQQTWYLVAEH----EGHIAVFTLDEIHLIQPLQETF 193
           +L  +  +YL+A +      +  VF +D +  I   +E F
Sbjct: 182 ILFSEFYFYLIAYYADDSADYPIVFRIDRMEKISVKKERF 221


>UniRef50_Q2LTY7 Predicted transcriptional regulator, DeoR family n=2 Tax=Syntrophus
           aciditrophicus SB RepID=Q2LTY7_SYNAS
          Length = 346

 Score = 81.5 bits (200), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 76/202 (37%), Gaps = 16/202 (7%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR--ERLMYLDLEYQSGYCRLRTAG 70
           +RL  I+   +  + +S   L+  F ++ RT++RD    +   +   E Q G  RL    
Sbjct: 44  IRLGQILRVFLDKDRVSSIWLSRNFQITPRTIQRDLAALKESGFPIHEIQKGVYRLGKDL 103

Query: 71  SEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDES-PCVIAPANPVPSP 122
            +   V D    A    L  +       F      L N+L     S P  +     +  P
Sbjct: 104 IKNLEVFDETELALVITLRNVVGQLGRPFQKAADGLFNSLYDAASSMPVYVRMDESI--P 161

Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRRCERL--APCRLLIHQQTWYLVAEHEGH--IAVF 178
             +    R++++I  ++      +  +  ++   P R++     WYLV +  G   I  +
Sbjct: 162 LDSSLLNRIVKSIRLKKIAGFYYKSGKPHQVNMEPYRVVHFGGFWYLVGKDTGDSVIKRY 221

Query: 179 TLDEIHLIQPLQETFRRNDSLC 200
            LD I   +  +  FR+     
Sbjct: 222 ALDRISDFKMARTPFRKIPENL 243


>UniRef50_Q7X2G0 Putative repressor n=3 Tax=Streptomyces RepID=Q7X2G0_9ACTO
          Length = 341

 Score = 81.1 bits (199), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 78/236 (33%), Gaps = 47/236 (19%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCR 65
           +A R   ++S L      +   LA   GVS RT+RRD   RL  L       +  SG  R
Sbjct: 2   IANRTLELLSLLQTQREWTGDGLAERLGVSPRTVRRDIN-RLRELGYPVTATKGPSGSYR 60

Query: 66  LRTA-GSEMQMVPDVLIFA---------------------HRSGLAGLFPG-LDRRLVNA 102
           L         +V D    A                       + +  L P  L  RL   
Sbjct: 61  LSRGARLPPLIVDDEQALAIALSLQTAPASVTGMGDATKRALNSIQELLPPHLAHRLATF 120

Query: 103 LLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERL-------AP 155
            +   E+   +  A P   PS      +L  A   R  V         + +        P
Sbjct: 121 SVEQIENAWEL--APPQVDPSLLA---QLSSAAQQRDLVRFSYRSIHHDSMQDGEVLAEP 175

Query: 156 CRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETF----RRNDSLCRLVED 205
            RL++    WYLVA  +       + +D I  + P    F      ++ + R V++
Sbjct: 176 HRLVVWSGRWYLVAYDQQRSSWHAYRVDRIKDLAPTAWRFGEREGPDEDITRFVQN 231


>UniRef50_UPI0001C37EC6 helix-turn-helix type 11 domain-containing protein n=1
           Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37EC6
          Length = 302

 Score = 80.0 bits (196), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 68/198 (34%), Gaps = 19/198 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYCRLRTAGSE 72
           RL  I+S L+  + ++  +LA +F VS RT+ RD        + +  + G     +    
Sbjct: 5   RLIGILSLLLQRDKITSAELAEKFEVSRRTILRDIETLNQSGIPVFAEQGQGGGISVMEG 64

Query: 73  MQMVPDVLIFAHRSGLAGLFPGLD--------RRLVNALLMCDES-----PCVIAPANPV 119
            +M   +L       +      LD        RRL+  L   D S       +I   +  
Sbjct: 65  YKMDRTLLSSEDMRAILSGLQSLDSVSGTNRYRRLMEKLSADDRSSADADNHIIIDLSSW 124

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVA--EHEGH 174
              + A     + QAI  R  +              + P  L+    +WY+       G 
Sbjct: 125 DKSAVADKIELIKQAIEKRHIIAFSYFSPSSETQRNIEPYHLVFQWSSWYVWGFCTDRGD 184

Query: 175 IAVFTLDEIHLIQPLQET 192
             +F L  +  ++   E 
Sbjct: 185 YRMFKLTRMTELKMTDEK 202


>UniRef50_Q5WD79 Transcriptional regulator n=5 Tax=Bacillus RepID=Q5WD79_BACSK
          Length = 304

 Score = 80.0 bits (196), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 20/207 (9%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM----YLDLEYQSG------ 62
            RL  II +L+  E LS  +LA EF VS RT+ RD           +  +  +G      
Sbjct: 4   ERLISIIFKLLNNEILSASRLADEFQVSSRTIYRDIEAICAAGIPVVSYQGTNGGFGIIK 63

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG--LDRRLVNALLMCDESPCVIAPANPVP 120
             +   +      + +++       L+G+F    +D  +     +       I   +   
Sbjct: 64  GYKFDKSLIGSYDLSNLITVLR--SLSGIFEDKTIDHTIERLKSLDPSGNNGILSVDLES 121

Query: 121 SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174
             + A S   L  AI  +R +               + P  +    + WYL       G+
Sbjct: 122 HRTEAHSLIGLRNAIQEKRIIRFDYVSSKNEWTSREIEPIHIQYKFRNWYLYGYCKERGN 181

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCR 201
              F +  +  I   ++TF +N  + R
Sbjct: 182 YREFRVSRMMNITLTEKTFAKNHDVKR 208


>UniRef50_D1B1H8 Putative uncharacterized protein n=1 Tax=Sulfurospirillum
           deleyianum DSM 6946 RepID=D1B1H8_SULD5
          Length = 307

 Score = 80.0 bits (196), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 13/187 (6%)

Query: 28  LSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPD-------VL 80
           +S++ L+ +  VS +T++RD  E L       Q    +L +  +E  +  +       + 
Sbjct: 30  MSIQDLSKQMDVSTKTIQRDLYEVLGEYGAVKQGRMWKLDSKKAEDNLNSNERIILGILD 89

Query: 81  IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRR 140
             A  +G +  F G    L+  +    E P      +     S    F  L +AI  +  
Sbjct: 90  EMAKNAGSS--FYGKAHSLLKQISQQLEHPIFANVESESLDESHIELFSLLEKAIKTKHT 147

Query: 141 VTLIAEGRRCERLAPCRLLIHQQTWYLVAE---HEGHIAVFTLDEIHLIQPLQETFRRND 197
           V+   +    + + P +L      WYL+A     +     F L  I+ +     TF  N 
Sbjct: 148 VSFTYKKHLFD-VQPLKLAFFDSFWYLLALDIQDDNKFKKFYLKSINDLTIQDNTFSINT 206

Query: 198 SLCRLVE 204
           +L   ++
Sbjct: 207 TLEERLK 213


>UniRef50_UPI0001C425E1 hypothetical protein BpOF4_16355 n=1 Tax=Bacillus pseudofirmus OF4
           RepID=UPI0001C425E1
          Length = 325

 Score = 79.6 bits (195), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 42/254 (16%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD-----------FRERLMYLDL--- 57
           A RL  I+  L   E ++ ++LA +  V+ RT+ RD           F ER  Y      
Sbjct: 3   ADRLLSILFSLQQNEKMTTKELATQLEVTERTIHRDMDALSAAGIPVFAERGKYGGWKVL 62

Query: 58  -EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLA-----------GLFPGLDRRLVNALLM 105
            EY+  +  L+ +      +          G+              +P   ++ +     
Sbjct: 63  EEYKKAFSGLKESELNTLFLSPSSHLLTDLGIEQEWSEARKKLLATYPAKKKQELTRSWD 122

Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIH 161
                          + +       L QA+     V +  E     R    ++P  L+  
Sbjct: 123 RIHIDSSTWRK--RNAMTKEDGLKELQQAVWNDVNVEIDYEKADGKRSTRVISPLGLVAK 180

Query: 162 QQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRR--NDSLCRLVEDP--VFIQALPHFR- 216
             TWY+VA   G +  F +  IH +  L E+F R  + +L     +    FI+ LP ++ 
Sbjct: 181 GSTWYVVAVSNGQLRNFKVSRIHSVTLLSESFDRPVDFNLAEYWHESKQKFIENLPKYKV 240

Query: 217 --FIQHSL---LTF 225
             FI  S+   LTF
Sbjct: 241 DIFISPSIVKRLTF 254


>UniRef50_A6P211 Putative uncharacterized protein n=5 Tax=Bacteria
           RepID=A6P211_9BACE
          Length = 302

 Score = 79.6 bits (195), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 74/230 (32%), Gaps = 49/230 (21%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG--------- 62
            RL  I+S L+  E ++  +LA +F VS RT++RD        + +    G         
Sbjct: 4   ERLIGILSILLQCEKVTAPELAEQFEVSRRTIQRDIESLCRAGIPITTAQGAGGGISIME 63

Query: 63  YCRLRTAGSEMQMVPDVL-------------IFAHRS-----GLAGLFPGLDRRLVNALL 104
             R+         +  +L              +A        G  GL PG    L++  L
Sbjct: 64  GYRVDRTVLTAPEMQAILAGLRSLDSVSGTRRYAQLMEKLSAGTGGLVPGCAHMLID--L 121

Query: 105 MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIH 161
                  +      +    G         AI     +       +G     + P  L+ H
Sbjct: 122 SSWYKTSL---PPKIELIQG---------AIEQHHTICFTYFSPKGESVRTIEPYYLVFH 169

Query: 162 QQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDS-LCRLVEDPVF 208
             TWY+           +F L+ +  +    E+F    + L  L  + VF
Sbjct: 170 WSTWYVWGWCRMREDFRLFKLNRMTELT-TGESFAPRSAPLPNLEPEQVF 218


>UniRef50_C6D6M2 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6D6M2_PAESJ
          Length = 237

 Score = 79.2 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 69/215 (32%), Gaps = 26/215 (12%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL---EYQSGYCRLR 67
           A RL  I+  L      +  +LA    VS RT+ RD     L  + +       G   L 
Sbjct: 3   ADRLISILMLLQLEGKKTAAELAERLEVSERTIYRDMDALSLSGVPVYADSGAGGGFSLP 62

Query: 68  TAG---SEMQMVPDVLIF--------AHRSGLAGLFPGLDRRLVNALL-MCDESPCVIAP 115
                  +    P++             + G+         +L+ AL     E    I  
Sbjct: 63  PNYKSPIDGLTTPEIQALFLYAAEGSTDQLGIVSALRSALLKLMQALPEQSREDAAWIRQ 122

Query: 116 ANPVPSPSGAL------SFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165
              +   S          F  + ++I     V +    R    +   + P  L+     W
Sbjct: 123 RIHIDPDSWQREEKALPHFAAVQESIMQHYAVEISYRSRDGAEKSLTVKPYGLVAKAGIW 182

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           +L+ E +  +  + L  I  ++  +E F R +S  
Sbjct: 183 FLIGEGDQGVQAYRLSRIQGLKITEEKFERPESFD 217


>UniRef50_A4J6Q1 Transcriptional regulator-like protein n=2 Tax=Peptococcaceae
           RepID=A4J6Q1_DESRM
          Length = 350

 Score = 79.2 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 78/238 (32%), Gaps = 38/238 (15%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVA---GETLSVRKLAAEFGVSVRTLRRDFRERLMYL-- 55
           MT+  ++     +RL++II  +        ++V +L  +F V+ R + RD       L  
Sbjct: 1   MTERAKKDATKGLRLNMIIDLINKRTPYGGVTVNELMDKFEVAERQVYRDLNTIANDLRV 60

Query: 56  DLEYQSG--------YCRLRTAGSEMQMVPD----VLIFAHRSG--LAGLFPGLDRRLVN 101
            L  Q             L                 L    + G  L G    L   LV+
Sbjct: 61  PLVKQERHIEGIKKTCYCLEVGYLPSLSPEKATVLFLSLLQQKGSALTGHLNELKDALVS 120

Query: 102 ALLMCDESP-----------CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----- 145
            L     +P             +     V        F +L+QA+    RV +       
Sbjct: 121 TLFKYHYNPKELAVEKLQNRIHLVEETLVEPEQVGEMFSKLVQALKVCYRVKIKYFVTHS 180

Query: 146 EGRRCERLAPCRLLIHQQTWYLVA--EHEGHIAVFTLDEIHLIQP-LQETFRRNDSLC 200
           +      + P  L+  +Q WYLV        I VF +D+I  + P   ETF+      
Sbjct: 181 QKETERVVEPYGLICKRQNWYLVGQCLERNAIRVFRVDQIRDVFPYTSETFQYPTDFD 238


>UniRef50_A7GBR0 Putative uncharacterized protein n=10 Tax=Bacteria
           RepID=A7GBR0_CLOBL
          Length = 310

 Score = 78.8 bits (193), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 26/222 (11%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYCRLRTAGSE 72
           RL  II  L+  E +S  KLA  F V+ RT+ RD     L  + +   +G     +   E
Sbjct: 5   RLISIIMVLLNNERISAIKLAEMFEVTPRTIYRDIDTISLAGIPIITHTGVNGGVSIMPE 64

Query: 73  MQMVPDVLIFAH----RSGLAGLFPGLDRR-------LVNALLMCDESPCVIAPANPVP- 120
            ++       +       GL+ +   L  +        V +LL  D+   +   +N +  
Sbjct: 65  YKVDKKFFTASDISTLLMGLSSVSTTLSNKEVIGTLEKVKSLLPKDQFRDIELKSNQITI 124

Query: 121 -------SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVA 169
                  + S   +  ++  A+   + ++    G    +    + P +L++ +  WYL  
Sbjct: 125 DLTTWMGNKSFQPNLEKVKSALNDSKYLSFEYYGGNRKKDKRCIEPYKLILKENNWYLQG 184

Query: 170 --EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209
                    VF L  I  ++ L+  F   +   + ++   +I
Sbjct: 185 YCTLREDFRVFKLSRISNLEILESIFVPREFKSKPLDGSGWI 226


>UniRef50_C6PMV9 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PMV9_9CLOT
          Length = 256

 Score = 77.7 bits (190), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 28/207 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSG---------Y 63
           RL  I+S L   E +++++LA  F VS RT+ RD        + +   SG          
Sbjct: 5   RLLGILSVLANTERITIQELAERFEVSKRTIFRDLDTLNQSGVPIVAYSGIGGGVSLLEG 64

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL---------LMCDESPCVIA 114
            +L+        + ++  F   +GL  +       L+N +         ++  ES  VI 
Sbjct: 65  YKLKNNILSKGDIKNI--FTALNGLMSI--DESNDLINLMAKLIPEETSMVFSESDYVID 120

Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVA-- 169
            ++             L +AI  R+ + L       RR   + P +L+  Q  WYL A  
Sbjct: 121 LSSWFQDSITQEKVSNLHKAIKNRKCIYLEYISKRSRRVRIIHPHKLVFKQAYWYLYAFC 180

Query: 170 EHEGHIAVFTLDEIHLIQPLQETFRRN 196
           E      +F ++ I   + +  +F   
Sbjct: 181 EDNQEFRLFKVNRIANYKIMDTSFSYK 207


>UniRef50_C9XKH2 DeoR-family transcriptional regulator n=4 Tax=Clostridium difficile
           RepID=C9XKH2_CLODC
          Length = 303

 Score = 77.3 bits (189), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 19/202 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTAGSE 72
           RL+ II  L+  + ++ ++LA  F VS RT+ RD     +  + +    G     +   E
Sbjct: 5   RLTEIIVILLNKKLVTAKELADRFEVSTRTIYRDIETLSMSGVPVYMTKGKGGGISLIEE 64

Query: 73  MQMVPDVLIFAHRSGL--------AGLFPGLDRRL--VNALLMCDESPCVIAPANPVPSP 122
             +   +L    +  L        A  +P ++  +  + ++         I         
Sbjct: 65  YSIDKAILSKKDKESLIVALKTLQATKYPEINSVVNKIGSIFGEQNFSNWIEIDFTEWGS 124

Query: 123 SGALS--FWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAE--HEGH 174
           +      F ++ +AI  R  +               + P +L+   +TWYL      +  
Sbjct: 125 NFNEDDKFTKIKEAILRRNTINFNYVNSLSSQTNRTVEPLKLMYKSKTWYLYGFCKLKDD 184

Query: 175 IAVFTLDEIHLIQPLQETFRRN 196
             +F +  I  +    E F R 
Sbjct: 185 FRIFRISRIRNLSIKDEVFSRK 206


>UniRef50_Q92EJ5 Lin0464 protein n=2 Tax=Firmicutes RepID=Q92EJ5_LISIN
          Length = 310

 Score = 76.9 bits (188), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 26/210 (12%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYCRLRTAGSE 72
           RL  I+  L+  E +S ++LA  F VS+RT+ RD     L  + +    G         +
Sbjct: 5   RLMSIVLILLDKERISAQELADRFEVSLRTIYRDIDAIDLAGVPIRSTPGVGGGFEIMPD 64

Query: 73  MQMVPDVLIFAHRSGLAGLFPGLD-----RRLVNAL------LMCDESPCVIAPANPVP- 120
            +M   V   A  S +      L        L+NAL      +  D +  +   AN +  
Sbjct: 65  YKMDSKVFSTADLSAILMGLSSLSNMVRGDELINALAKIKSFIPADRAKEIELKANQIYI 124

Query: 121 -------SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA 169
                  + +       +  A+   + +T         +    + P +L++    WYL  
Sbjct: 125 DLSQWTGNNNIQPHVEIIKVALQENKLLTFEYIAHQGNKTVRIVEPYQLVMKSSHWYLYG 184

Query: 170 EHEGH--IAVFTLDEIHLIQPLQETFRRND 197
             +      +F L  +  +Q L++TF   D
Sbjct: 185 YCQNRNDFRLFRLSRMSGLQILEDTFTLRD 214


>UniRef50_C0CTB1 Putative uncharacterized protein n=4 Tax=Firmicutes
           RepID=C0CTB1_9CLOT
          Length = 312

 Score = 76.9 bits (188), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 26/211 (12%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYCRLRTAGSE 72
           RL  II  L+  E +  ++LA  F VS RT+ RD     +  + +    G         E
Sbjct: 5   RLVSIIMMLLDKERIGAQELADRFEVSPRTIYRDIETINMAGIPVRSTPGVGGGFEIMQE 64

Query: 73  MQMVPDVLIFAHRSGLAGLFPGLD-----RRLVNAL------LMCDESPCVIAPANP-VP 120
            ++  +V   A  S +      L        LVNAL      +  D +  +   AN    
Sbjct: 65  YKVDKNVFSAADLSAILMGLSSLSGMVRGNELVNALAKVKRFIPADRAKEIELKANQIYI 124

Query: 121 SPSGALS-------FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA 169
             S  +          R+  A+   R ++         +    + P ++++    WY   
Sbjct: 125 DLSPWMGNRNIQPYLERVKTALQESRLLSFEYADRFGNKTVRTVEPYQIVLKGSHWYFQG 184

Query: 170 EHEGHI--AVFTLDEIHLIQPLQETFRRNDS 198
                    +F L  I  +Q  +ETF   D 
Sbjct: 185 YCRKREDFRLFRLSRISNLQMTRETFSPRDY 215


>UniRef50_D2Q3M3 Helix-turn-helix type 11 domain protein n=1 Tax=Kribbella flavida
           DSM 17836 RepID=D2Q3M3_9ACTO
          Length = 323

 Score = 76.5 bits (187), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 29/199 (14%)

Query: 30  VRKLAAEFGVSVRTLRRDFRERLM------YLDLEYQSGYCRLRTAGSEMQMVPDVLIFA 83
            R+LA E  VS+RT+ RD  E L       Y D     GY  +    +++  + +    A
Sbjct: 21  ARELAEELEVSLRTIYRDV-EALAAAGVPVYADQGRAGGYRLVDGYRTKLTGLTEQEAAA 79

Query: 84  HRS----------GLAGLFPGLDRRLVNALLMCD-------ESPCVIAPANPVPSPSGAL 126
                        GL      ++ +L+ AL           ++   +           + 
Sbjct: 80  LFLVGMPGPAAALGLTAETSAVELKLLAALAPDQRDRAGRLKNRFHLDMPAWYREAEDSP 139

Query: 127 SFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLD 181
              ++ +A+   RR+T++             L P  L++   +WY+VA   G +  + + 
Sbjct: 140 YLAQVAEAVLQDRRITVLYRRWEEPREVERTLDPYGLVLKHGSWYVVAAASGGVRTYRVS 199

Query: 182 EIHLIQPLQETFRRNDSLC 200
            I  +      F R     
Sbjct: 200 NILALTMTGTVFTRPADFD 218


>UniRef50_C1SIZ5 Predicted transcriptional regulator, COG2378 n=1 Tax=Denitrovibrio
           acetiphilus DSM 12809 RepID=C1SIZ5_9BACT
          Length = 302

 Score = 76.5 bits (187), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 15/180 (8%)

Query: 27  TLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRS 86
            ++ R +A  F VS RT +R   E + +L   ++       +   ++ +   +L  A  S
Sbjct: 19  EINARMVAEYFEVSKRTAQRYLEE-ISFLPSIHRDEERYTYSLTEKVTLSDSLLKSAEMS 77

Query: 87  GLAGLF------------PGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQA 134
            L  +             P LD ++   +     S   I  +  +     A +  +L + 
Sbjct: 78  FLNAVLGYAKTVMGEQNSPMLD-KISKKIQYAGNSTHQIISSPVIDYDIVAENHIKLEEY 136

Query: 135 ITGRRRVTLIAEGR-RCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETF 193
           I  +  ++   E   +   + P ++++H   WYL A H   +  F L+ I  I+   E +
Sbjct: 137 IENKLLISFYYEKSDKNYTVEPYKIILHNGFWYLAAGHNNTLKKFVLEYIQDIKSSGENY 196


>UniRef50_Q5WCJ1 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WCJ1_BACSK
          Length = 321

 Score = 76.1 bits (186), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 77/235 (32%), Gaps = 30/235 (12%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR-----------ERLMYLDLEYQ 60
           A RL  I+  L   + +S + LA E GVS RT+ RD             ER      +  
Sbjct: 3   AERLLSIVLLLQNRKIISTKALAEELGVSERTVHRDMDALSSAGIPVYAERGKTGGWKLL 62

Query: 61  SGYCR-LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR---RLVNALLMCDESPCVIAPA 116
            GY   L     E      +       G  G          +L+ +L          A  
Sbjct: 63  DGYRTQLTGLTKEEVKTLFLSPPIDLLGDLGYTKNWQEAREKLLASLSSATSVDFADAQN 122

Query: 117 NPVPSPSGALS-------FWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTW 165
                 S           F  L Q +  +R +++  E          + P  L+    TW
Sbjct: 123 RIYIDASTWRGKKETVEAFSLLNQGLWEQRALSISYEKYGSTASEREVEPLGLVAKGSTW 182

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216
           YL+A  +  +  F    I   Q L + F R ++    R   D    FI+ LP + 
Sbjct: 183 YLIAAEQQELKTFRASRIRSAQLLPKRFERPENFDLARYWHDSKNAFIRTLPSYE 237


>UniRef50_B2JN46 Helix-turn-helix type 11 domain protein n=4 Tax=Proteobacteria
           RepID=B2JN46_BURP8
          Length = 323

 Score = 76.1 bits (186), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 76/231 (32%), Gaps = 31/231 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRT 68
           RL  ++  L     ++ + LA EF VS+RT+ RD  +        Y D     G+  L  
Sbjct: 5   RLVSMLLMLQVKGRVTAQALADEFDVSIRTVYRDIDQLSAAGVPVYADRGPGGGFALLDG 64

Query: 69  AGSEMQMVPDVLIF----------AHRSGLAGLFPGLDRRLVNALLM------CDESPCV 112
             +++  +                A   GLA        +LV AL           S   
Sbjct: 65  YRAKLTGITRAEAETLSIAGLTGAASDLGLAEQLRAAQLKLVTALPDAAPDTSRIGSRVH 124

Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-------EGRRCERLAPCRLLIHQQTW 165
           I P      P+       L  A+  ++RV++         +        P  L++    W
Sbjct: 125 IDPVGWYQRPTPTPWLTMLAGAVWEQKRVSMQYRTWNGTDDKEGVRVRDPLGLVLKGGEW 184

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFR 216
           YLV      +  + +  I  +    ETF R D          +  A+  F 
Sbjct: 185 YLVTRVRTQLRTYRVSSIAQLTVHDETFERPDGFDLR---EEWTAAVASFE 232


>UniRef50_C7NAI6 Helix-turn-helix type 11 domain protein n=3 Tax=Leptotrichia
           RepID=C7NAI6_LEPBD
          Length = 299

 Score = 76.1 bits (186), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 77/201 (38%), Gaps = 20/201 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGY----- 63
           RL  I+  L+  +T++ +KL+  F VS+RT+ RD  E L +       L  ++G      
Sbjct: 5   RLFQIVLILLNKKTITAKKLSEHFNVSIRTIYRDI-EALSFAGIPIYSLRGKNGGIRLLE 63

Query: 64  -CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVN-ALLMCDESPCVIAPANPVPS 121
              L  +    +   ++L +A  S  A  +P +D  L    L+    S   I        
Sbjct: 64  SYILDKSLLSSKEQNEIL-YALESLKASNYPDVDEVLKKLNLIFNKSSDDWIEVDFSRYG 122

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE--HEGHI 175
            +    F  + +AI   + V               + P ++   ++ WYL A    +  I
Sbjct: 123 SNDNTLFNNIKKAILNSQAVKFTYFNTNGETSQRTVNPLKIWFKEKAWYLFAYCQKKNEI 182

Query: 176 AVFTLDEIHLIQPLQETFRRN 196
             F ++ I  +    E F R 
Sbjct: 183 RQFKINRIKNLTLTNEYFERR 203


>UniRef50_C1SHC7 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus
           DSM 12809 RepID=C1SHC7_9BACT
          Length = 306

 Score = 76.1 bits (186), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 21/215 (9%)

Query: 18  IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSE 72
           +I  L     ++   +A E GVS+RT +R   + + YL       E    Y        E
Sbjct: 10  LIKLLNENRYVTSTMVADELGVSLRTAQRYLSD-MSYLPGVCYSDEKHQWYLTEHYGLHE 68

Query: 73  MQMVPDVLIFAHRSGLAGL--------FPGLDRRLVNALLMCDESPCVI--APANPVPSP 122
             +  D    A  SGL           + G+  +L   ++       +I    A+ V   
Sbjct: 69  SYLKQD--ELAVLSGLFDYAENILQDEYSGMLTKLRKKIISASNRQNIIQFMKADSVGFD 126

Query: 123 SGALSFWRLIQAITGRRRVTLIA-EGRRCERLAPCRLLIHQQTWYLVAE-HEGHIAVFTL 180
             A +F  L   I  ++ +T    +  +   + P RL+ +   WYL A   +  +  F L
Sbjct: 127 KVAENFTLLENYILKKQVITFDYLKNDKTYEVKPYRLIYNDGFWYLAALNKQDSLRKFGL 186

Query: 181 DEIHLIQPLQETFRRNDS-LCRLVEDPVFIQALPH 214
           D +  I+   ETF      +   +     I   PH
Sbjct: 187 DLMENIKSSNETFEIATDVIDAEISQANNIFFDPH 221


>UniRef50_Q65LG5 Hypothetical DNA-binding protein n=1 Tax=Bacillus licheniformis
           ATCC 14580 RepID=Q65LG5_BACLD
          Length = 320

 Score = 76.1 bits (186), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 31/245 (12%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR-----------ERLMYLDLEYQSG 62
           RL  I+  L A   ++ ++LA    VS RT+ RD             ER +         
Sbjct: 5   RLISILLMLQAQGQMTAKELAERLEVSERTIYRDMEALSGAGIPVVAERGINGGWSLLDD 64

Query: 63  YCR----LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVIAPAN 117
           Y      L+ +      VP         GL  +      +L+ +L     ++   +    
Sbjct: 65  YQTTLTGLKESEIRALFVPLSEQLLDDLGLTRISEEARNKLIASLPSEYRQNAKDVWNRI 124

Query: 118 PVPSPS------GALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167
            + + S       A SF  L  AI   +++ ++ +          +AP  L+     WYL
Sbjct: 125 YIDTCSWRHKKEKAESFEVLKDAIWKDQKLKIVYQRADGQTADRVVAPLGLVAKGANWYL 184

Query: 168 VA-EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFRFIQHSL 222
           +A +  G I  +    I     ++ETF R ++             FI+ LP +     + 
Sbjct: 185 IASKENGEIRNYRASRIKSAVFVRETFDRPENFDIAHVWRSSTKEFIERLPTYEVRVKAA 244

Query: 223 LTFVP 227
              +P
Sbjct: 245 QAILP 249


>UniRef50_C6PV47 Helix-turn-helix type 11 domain protein n=2 Tax=Bacteria
           RepID=C6PV47_9CLOT
          Length = 313

 Score = 75.3 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 30/212 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCRLRT 68
           RL  II  L+  + +S  +LA  F V++RT+ RD        + +        G   +  
Sbjct: 5   RLVSIIMILLERKKISAPELAKMFEVNLRTIYRDIDTINQAGIPIITYRGANGGIGIMEK 64

Query: 69  AGSEMQ--MVPDVLIFAHRSGLAGLFPGLD-RRLVNAL--------------LMCDESPC 111
              E +   + D+       GL  +   +  + L+N +              +    +  
Sbjct: 65  YKIEKKLFTLSDITEL--LIGLKSIHSTISNQELLNTMAKLKGLVPKDELQQVEKKTNRI 122

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167
            I       +    LS  ++  AI     ++         +   ++ P RL++   +WY+
Sbjct: 123 KIDHTPWFGNKRIQLSLKKIKTAINKNSFISFKYFDRLGQKSERKIEPYRLVLKNSSWYI 182

Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRND 197
                      +F +  I  ++ L+ETF   +
Sbjct: 183 QGYCTLREDFRIFEVSNISSLKVLEETFIPRE 214


>UniRef50_Q8F269 Transcription regulator n=2 Tax=Leptospira interrogans
           RepID=Q8F269_LEPIN
          Length = 317

 Score = 75.0 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 28/232 (12%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD-----------FRERLMYLDLEYQ 60
           A RL  I+ +L A   +S R LA +  VS RT+ RD           F ER      E  
Sbjct: 3   ADRLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVFAERGSKGGWELS 62

Query: 61  SGYCRLRTAGSEMQMVPDVL----IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116
            GY    T   + ++   +L      A   G          + + +L    +    +   
Sbjct: 63  EGYRTNLTGMKKEEIFSMILTSSTRIASDLGRKKDLDSALMKFMASLPPAYQKEAEMVRQ 122

Query: 117 NPVPSPSGALS------FWRLIQ-AITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWY 166
                 +G         F  LIQ A+   +++ L  +     +   ++P  L+   + WY
Sbjct: 123 RIYVDGAGWSCSEEELPFLSLIQEAVWQGKKIVLRYKTDEESKKRNVSPLGLVAKGKIWY 182

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRND-SLCRLVEDPV--FIQALPHF 215
           LVA++E     F +  I   +      R     L +  +D    F+  +P +
Sbjct: 183 LVAKYEKEFRTFRVSRIVEAKLGDSFERPKRFDLEKYWKDSTQNFLSKIPSY 234


>UniRef50_Q9S3S5 Putative uncharacterized protein n=1 Tax=Enterococcus faecium
           RepID=Q9S3S5_ENTFC
          Length = 302

 Score = 75.0 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 78/220 (35%), Gaps = 22/220 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYC----RLRT 68
           R+  I+  L+  E ++ ++LA  F VSVRT+ RD  +       +  Q G       L  
Sbjct: 5   RMFGILCVLLEREKITAQELAEYFEVSVRTIHRDLLDLSSAGFPVTTQQGIGGGISLLPN 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDR----RLVNALLMCDESPCVIAPANPVPSPSG 124
                 ++    I    SG+ G F  +D     + + A L   +   ++   + +   + 
Sbjct: 65  FKYSKSVLNKEDIDLIVSGIQG-FASIDESSKIKTLLAKLRLGQEDKLLLENDIIIDFTS 123

Query: 125 ALS-------FWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVA--EHE 172
                        +  AI  RR + L      G     + P +L+  ++ WYL A     
Sbjct: 124 WNHKNTTIEKIKIIRSAIASRRLLELEYYSSNGYSKRTVEPYKLIFKEEYWYLFAYCTQR 183

Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
               VF L+ I  +   + T+         V    F   +
Sbjct: 184 QDFRVFKLNRISKLLLCERTYTERTDYEIPVLQSAFSNGV 223


>UniRef50_A3CLM4 Putative uncharacterized protein n=2 Tax=Streptococcus
           RepID=A3CLM4_STRSV
          Length = 299

 Score = 75.0 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 17/196 (8%)

Query: 18  IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE----YQSGYCRLRTAGSE 72
           IIS LV     + ++L+  F VS RT+ RD  +  L  + L        G   +    ++
Sbjct: 9   IISHLVNQRKTTAKELSELFKVSTRTIMRDIDDLSLAGIPLYVMKGKNGGIFLMEDFQTD 68

Query: 73  MQMVPDVLIFAHRSGLAGLFPGL-DRRLVNALL----MCDESPCVIAPANPVPSPSGALS 127
              +      +  SGL   +  L D    NA+L        S   I  +    +      
Sbjct: 69  KPPLTQSERLSIESGLKSRYQVLEDTSTFNAILKLNATNTYSDFEIDLSLSQGNLEIRTL 128

Query: 128 FWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHIA--VFTLD 181
            ++L++AI GR ++             +   P R++   ++WY+ A         VF + 
Sbjct: 129 IFKLLEAIRGRVKIKFSYINSQGLVSQKNCEPYRIVYKDRSWYMDAYDTDKARFSVFKVA 188

Query: 182 EIHLIQPLQETFRRND 197
            I  +    +TF +  
Sbjct: 189 RISELTLS-DTFSKRH 203


>UniRef50_D0MGR2 Helix-turn-helix type 11 domain protein n=1 Tax=Rhodothermus
           marinus DSM 4252 RepID=D0MGR2_RHOM4
          Length = 336

 Score = 75.0 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 74/232 (31%), Gaps = 34/232 (14%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY 59
           M  AER  +R   RL  +I  L     L+ R+LA  FGVS RT+ RD R      + L Y
Sbjct: 1   MKLAERTRNR-TERLFALILLLQTRPGLTARQLAEHFGVSRRTIFRDLRALSEANVPLTY 59

Query: 60  QS--GYCRLRTAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGL 95
               GY  L        M           G                      +  + P  
Sbjct: 60  AEGGGYEILEGYQLPPLMFTAREAATLLIGTEFMKRQPDASLRADADAVALKIRSVLPRS 119

Query: 96  DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRC 150
            R  ++ L                 S   A  ++ L +AI  ++ V L            
Sbjct: 120 IREYIDRLQERIVIDPY-WLQTMQGSDEEAGYWYELSEAIARQQSVHLEYYVPSRDELTQ 178

Query: 151 ERLAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200
            R+ P  L+ +   W L+A       I  F LD I  +  L+E F       
Sbjct: 179 RRVDPLGLVYYTDHWNLIAYDHLRKDIRNFRLDRIQRLTVLRERFTPPRDFD 230


>UniRef50_C0EAB2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum
           DSM 5476 RepID=C0EAB2_9CLOT
          Length = 298

 Score = 74.2 bits (181), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 75/217 (34%), Gaps = 22/217 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGY----- 63
           RL  +I  L+    ++ ++LA  F VS RT+ RD  E L    +     + + G      
Sbjct: 5   RLFEMIYLLLDRRRMTAKELAERFEVSERTVYRDV-EVLSAAGIPVYATKGRGGGIQLLD 63

Query: 64  -CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAPANPV- 119
              L  +    +   ++L        A  +P +D  L  +++L     +  +        
Sbjct: 64  DFVLDKSVLSEREKNEILFSLQGMSAAH-YPEIDEVLNRLSSLFQQSNTDWIDVDFTQWG 122

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--HEG 173
                   F RL  AI  R+RV +        +    + P +L    + WYL A      
Sbjct: 123 SDEEEKKKFARLRDAILSRKRVRMCYCSAYGIQSSRTVEPVKLRFKGKAWYLQAYCCKRQ 182

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210
              +F L  I  +    E F          E P F Q
Sbjct: 183 EYRMFKLFRISNLSVTDELFEPKQPPSWEEEKPSFSQ 219


>UniRef50_B8DCU5 HTH domain family n=6 Tax=Listeria monocytogenes RepID=B8DCU5_LISMH
          Length = 318

 Score = 74.2 bits (181), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 72/207 (34%), Gaps = 22/207 (10%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE----YQSGYCRLR 67
            RL  II  L+  E +S  ++A  F VS RT+ RD     +  + +      + G   + 
Sbjct: 16  ERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAGTKGGIGIMP 75

Query: 68  TAGS--EMQMVPDVLI-FAHRSGLAGLFPGLDRR----LVNALLMCDESPCVIAPANPVP 120
           T     ++  V D+    A   G+  L    + +     +  +L     P   + +    
Sbjct: 76  TYKVDKKLLTVDDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLDFS 135

Query: 121 SPSGALSF----WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE-- 170
           + S           L  AI   + V L        +   +  P  LL   ++WYL     
Sbjct: 136 NLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQTIRKTEPYHLLFRNRSWYLQGYSL 195

Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRND 197
                  F +  I  ++ L+ETF    
Sbjct: 196 ERSDFRTFKMSRIVELKTLEETFEARP 222


>UniRef50_C5REL4 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5REL4_CLOCL
          Length = 304

 Score = 73.8 bits (180), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR- 67
           RL  I+  ++  E ++ ++LA  + VSVRT++RD          +Y +     GY  L  
Sbjct: 5   RLFSILLMIINKEKITAKELAEHYQVSVRTIQRDIDTLSMAGIPIYAESGKNGGYQLLEG 64

Query: 68  -TAGSEMQMVPDVLIF-AHRSGLAGLFPGLDRRLVN------ALLMCDESPCVIAPANPV 119
                      +  I  A    L  + P LD + ++       LL   ++  ++     +
Sbjct: 65  YKLDMNFLNTKEAKIIRAILDNLEKIAPYLDMKTISNKFSSTHLLDNQDNKLIMKLNPLI 124

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEHEGHI 175
              +       + +A     ++ +             + P  L++    WY+    E   
Sbjct: 125 NEENLKKHLELIAKARDNYHKICMKYVDMNFQVTDRIICPYTLVMMGTVWYVYGYCELRE 184

Query: 176 --AVFTLDEIHLIQPLQETFRRND 197
              +F L  I     L E F   +
Sbjct: 185 DFRIFKLSRIIECIILNEEFVVKE 208


>UniRef50_A0AFG8 Complete genome n=16 Tax=Listeria RepID=A0AFG8_LISW6
          Length = 307

 Score = 73.8 bits (180), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 22/211 (10%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE----YQSGYCRLR 67
            RL  II  L+  E +S  ++A  F VS RT+ RD     +  + +      + G   + 
Sbjct: 4   ERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLMMANIPIYTIAGTKGGIGIMP 63

Query: 68  TAGS--EMQMVPDVLI-FAHRSGLAGLFPGLDRR----LVNALLMCDESPCVIAPANPVP 120
           T     ++    D+    A   G+  L    + +     +  +L     P   + +    
Sbjct: 64  TYKVDKKLLTAEDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLDFS 123

Query: 121 SPSGALSF----WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE-- 170
           + S           L  AI     V L        +   R  P  LL   ++WYL     
Sbjct: 124 NLSMKKELNAKVESLYLAIKKHHLVELSYIDRTGKQTIRRTEPYHLLFRNRSWYLQGYNL 183

Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201
                  F +  I  ++ L+ETF     + +
Sbjct: 184 ERNDFRTFKMSRIVELKTLEETFEARPFVVK 214


>UniRef50_C9MZ16 HTH domain protein n=1 Tax=Leptotrichia hofstadii F0254
           RepID=C9MZ16_9FUSO
          Length = 315

 Score = 73.8 bits (180), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 27/221 (12%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY------ 54
           M    +  +  ++R+  II RL   E L+   LA EF V ++T++RD      Y      
Sbjct: 1   MAGKNQNSEEKSIRILKIIKRLYQKEILNGTDLANEFNVDIKTVQRDIETLRAYFLEENG 60

Query: 55  LDLEY--QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES--- 109
            +++Y        L     +     ++L  +     +  F   + + +   L+   S   
Sbjct: 61  AEIKYSKSKKGYYLEENSEKSFTNEEILAISKIILESRAFNKNETQTLINKLINHSSGND 120

Query: 110 -----PCVIAPANPVPSPSGALSF----WRLIQAITGRRRVTLIA----EGRRCERLAPC 156
                  + +  +         +     W L Q I  +  + +      +  +   + P 
Sbjct: 121 RETIKGLINSEKSNYIPLQHGQNLLTVIWNLAQHIKNQELININYTTKDKQGKNYNIKPL 180

Query: 157 RLLIHQQTWYLVAEHEGH---IAVFTLDEIHLIQPLQETFR 194
            ++  +  +YL+A  E      A+F +D I  I+   + F+
Sbjct: 181 SVMFSEYYFYLIAYIENKEEYPAIFRIDRITEIENTGKKFK 221


>UniRef50_UPI0001788164 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001788164
          Length = 313

 Score = 73.4 bits (179), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 37/225 (16%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRL 66
           + RL  ++  + A ++ +VR+LA EFG+SVRT+ RD  E L  L      ++ + G  RL
Sbjct: 4   SQRLIQLMMMINAKKSFTVRELADEFGLSVRTISRDLDE-LSGLGVPIYSVQGRGGGYRL 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126
                + +M+P +  F     +A  F        + L   + +   +             
Sbjct: 63  ----LQERMLPPI-SFTESEAIAVFFACQSLSYFSTLPFGEGAATALHKFYHYLPADIKE 117

Query: 127 SFWR---------------------LIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQ 162
              R                     L+QA+  R+ VT+      G     + P  L    
Sbjct: 118 QIERLKDRVMIHSPFRPMSADILQTLMQAVMVRQAVTISYRSSAGSSQRHIQPIGLYASS 177

Query: 163 QTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
             WY  A       I  F +D +    P +    R D   + ++D
Sbjct: 178 GYWYCPAYCFTQEDIRQFRVDRMTAASPNESLSIREDIASQTLQD 222


>UniRef50_A7VYA2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753
           RepID=A7VYA2_9CLOT
          Length = 304

 Score = 73.4 bits (179), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 72/205 (35%), Gaps = 26/205 (12%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL------MYLDLEYQSGYCRLR 67
           RL  I+  L+ GET++   LA    VS RT+ RD  E L      +Y+      G   L 
Sbjct: 5   RLFEILYLLMEGETVTASALARRLEVSPRTIYRDV-EALSGAGIPIYMTKGRGGGIRLLP 63

Query: 68  TAGSEMQMVP-----DVLIFAHRSGLAGLFPGLDRRL----VNALLMCDESPCVIAPANP 118
               E  +       ++L       + G   GL  +     + AL     +  +    + 
Sbjct: 64  DFVLEKSLFSHQEQDEILYALQSLAVTG---GLQDKTVLSRMRALFQRTPADWIDVDFSG 120

Query: 119 VPS-PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--H 171
               P     F R+ QA+   R ++             R+ P +L      WY+      
Sbjct: 121 WGHGPQEREKFLRIKQAVLESRVLSFTYYSTCGQTTNRRIEPMKLRFRGSAWYVHGFCLE 180

Query: 172 EGHIAVFTLDEIHLIQPLQETFRRN 196
           +  + VF +  +  I   +E F R 
Sbjct: 181 KQELRVFKVSRMEGISVTEEAFDRR 205


>UniRef50_C6CRF1 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6CRF1_PAESJ
          Length = 302

 Score = 73.0 bits (178), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 34/212 (16%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGS- 71
            RL  II +L+  + L    LA EF VS RT+ RD        D+   +G+  +   G+ 
Sbjct: 4   ERLISIIYKLLNNDVLPANALAEEFQVSQRTIYRDI-------DVICAAGFPVVSYQGNK 56

Query: 72  -------EMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCVI 113
                    +M   +L     + L  +  GL               +  +     +P + 
Sbjct: 57  GGFGMLEGFKMDKSLLGSYDVNALVTVLKGLSTVFEDERAQGTIERLQTVGTEQRTPSLA 116

Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA 169
                  S     +   L  AIT R+ +          R    L P RL     +WY+  
Sbjct: 117 VDFETRRS--DPETLPLLRAAITERKVIRFDYINAKNERTTRELEPVRLHFKYGSWYIYG 174

Query: 170 EHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199
                     F L  +      +  F  +  +
Sbjct: 175 YCLTRCDYREFRLSRMVEALQTERCFEPHKEV 206


>UniRef50_C3L2F0 Transcription regulator n=4 Tax=Clostridium RepID=C3L2F0_CLOB6
          Length = 315

 Score = 73.0 bits (178), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 80/249 (32%), Gaps = 47/249 (18%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYCRLRTAG 70
           A RL  I+  L   + L+  +L+ +  VSVRT+ RD        + +  + G        
Sbjct: 3   ADRLISILMLLQIYKKLTASELSKKLEVSVRTIYRDIDTLSGIGVPIVTEKGI------N 56

Query: 71  SEMQMVPDVLIFAHRSGLA-----GLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
             ++++ D       +G+       LF     +++  L + +     I       SP+  
Sbjct: 57  GGIKLLGDYKT--SLTGINKNELLSLFIPTGDKILEDLGVENLKDSTILKILGNSSPNDL 114

Query: 126 LSFWR--------------------------LIQAITGRRRVTLIA---EGRRCERLAPC 156
             F                            L  AI   + + ++       +   L P 
Sbjct: 115 KEFENIQNYIYIDMYTWNKPNNIVNTNILSILQNAIWNSKSLKILYRKIYETKEVELNPL 174

Query: 157 RLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCR----LVEDPVFIQAL 212
            L+  + TWYLVA +   I  + +  I     + +TF R                F   +
Sbjct: 175 GLVCKRGTWYLVAVNNRIIKTYKVTSIESALLMTDTFIRPYDFNLKSYWRNSTSNFKSLI 234

Query: 213 PHFRFIQHS 221
           P + F    
Sbjct: 235 PKYTFTFKV 243


>UniRef50_B2T6R2 Helix-turn-helix type 11 domain protein n=4 Tax=Proteobacteria
           RepID=B2T6R2_BURPP
          Length = 321

 Score = 72.6 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 25/214 (11%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQ---SGYCRL- 66
           A RL  I+  L A   ++ + LA E  VS+RT+ RD        + +  +    G  RL 
Sbjct: 3   ASRLLSILMTLQARGRVTAQFLADECAVSLRTIYRDIDALSAAGVPVHSERGAEGGYRLL 62

Query: 67  ---RTAGSEMQMVPDVLIFA-------HRSGLAGLFPGLDRRLVNALL-------MCDES 109
              RT  + +       +F           GL  +  G   +L+ AL            S
Sbjct: 63  DGYRTRLNGLSSQEAESLFLAGLPGPMQALGLGAVMAGAQTKLLAALPVELRSTAERMRS 122

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQTWY 166
              +                 + +A+  +  + +  +     +  R+ P  +++    WY
Sbjct: 123 RFHLDAPAWFSDADEPAHLPLIARAVWEQHPLEIRYQSWKAEKFRRIEPLGIVLKSGAWY 182

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           +V      + ++ +  I  I  L ETF R  +  
Sbjct: 183 VVGRVGQDLRIYRISRILEISLLDETFERPCAFD 216


>UniRef50_B1C6Z1 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1C6Z1_9FIRM
          Length = 301

 Score = 72.3 bits (176), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 21/202 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGY--------- 63
           RL  I+  L+  E ++ ++LA E  VS RT+ RD     +  + +  Q GY         
Sbjct: 5   RLIQIVFLLLRHENITAKQLAKELCVSARTIYRDINILSIAGIPITSQKGYGGGLSLLQG 64

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--VNALLMCD-ESPCVIAPANPVP 120
             L  +    +   +++        +  +P  D+ L  +  L   + +S  +    +   
Sbjct: 65  FSLDKSYFTQEEQKNIIQALQILK-SSNYPNADKSLNKIAGLFSHNLQSEWLEIDFSYWG 123

Query: 121 SPSGAL-SFWRLIQAITGRRRVTLIAEGRRCE----RLAPCRLLIHQQTWYLVAE--HEG 173
           SP     +   L +AI  +  +T              + P +L+     WYLVA   H+ 
Sbjct: 124 SPEKERNNITVLERAIINKYVITFTYFNAELTITNQIVEPLKLVFKSHAWYLVAYSKHKN 183

Query: 174 HIAVFTLDEIHLIQPLQETFRR 195
            I  F +  I  +Q   + F R
Sbjct: 184 DIRTFKMSRIRELQITDQLFDR 205


>UniRef50_A7ZBV9 HTH domain family n=1 Tax=Campylobacter concisus 13826
           RepID=A7ZBV9_CAMC1
          Length = 305

 Score = 72.3 bits (176), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 9/184 (4%)

Query: 29  SVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPD---VLIFAHR 85
           ++++L A  GV+ +T++RD  + L       +  Y  L    +   +  D   VL     
Sbjct: 29  TIKELTAMLGVTSKTIQRDLYDTLREYGAVKKGHYWSLNDEDASDGLDGDDRVVLNILDN 88

Query: 86  SG--LAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTL 143
               +   F      L+  +      P +    N   S    ++F  L  AI  +  +T 
Sbjct: 89  VAKNMGSNFYSKAHVLLEQISQQLNHPILTNINNEKLSEDDLVNFQTLEDAIREKAEITC 148

Query: 144 IAEGRRCERLAPCRLLIHQQTWYLVAEHE---GHIAVFTLDEIHLIQPLQETFRRNDSLC 200
              G     + P +L + +  WYL+            F L  I  I+   E F  +  L 
Sbjct: 149 TYNGFEFL-VKPLKLALFEGFWYLLLLDSKKGNKFKKFHLKSIKDIKHSGEKFELSSELD 207

Query: 201 RLVE 204
             V+
Sbjct: 208 ERVK 211


>UniRef50_C4FVK8 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271
           RepID=C4FVK8_9FIRM
          Length = 296

 Score = 71.9 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 69/203 (33%), Gaps = 21/203 (10%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSG----- 62
           A RL  I+  L+A      R LA  F V+ RT+ RD  +   +      ++ Q G     
Sbjct: 3   AGRLLGILHYLLAHGRTPARVLAQRFEVTERTILRDMDDLSEFGVPVYAIQGQGGGWEID 62

Query: 63  -YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP--V 119
               L     + Q    +L     S       GL  +L        ++   +        
Sbjct: 63  RRYVLPAGLLQEQEQSQILAALEASQADD---GLLDKLKAHFKGSQKADHWLLVDQTTWH 119

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVA--EHEG 173
            SP  +  F  L QAI  R  VT             ++ P RL++    WYL A      
Sbjct: 120 QSPHLSHDFDLLKQAILERHLVTFRYCSNQGIWSQRQVEPARLVLKHYRWYLYAWCRERQ 179

Query: 174 HIAVFTLDEIHLIQPLQETFRRN 196
               F L  +  +Q L + F  +
Sbjct: 180 DFRYFKLSRMQDLQVLTQGFESD 202


>UniRef50_C6D7L1 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6D7L1_PAESJ
          Length = 320

 Score = 71.5 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 31/223 (13%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-------LMYLDLEYQSGYCR 65
            RL  I   L+  + +  ++LA +  VS+RT+ RD           + Y  +E   GY  
Sbjct: 4   ERLMAITILLLNRKRVQAQELAEQLEVSLRTIYRDLDSLGQAGIPIVSYTGME--GGYEI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFP--GLDRRLVNALLM-------------CDESP 110
           + +   + Q++    + A  + L GL      DR  ++ LL                E  
Sbjct: 62  MDSFRLDRQLLSFDELTALFTALRGLESTNAYDRSNMDLLLSKVGAMVAQAEQGRTGEGD 121

Query: 111 CVIAPANPVPSP-SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165
            +     P  +       + +L QA+  R+ +         G +   + P  L++    W
Sbjct: 122 RIQVDFTPWKNSEEDQARYDQLRQAVNDRKLIRFHYTSRTGGEQEREIEPMALVLKNYAW 181

Query: 166 YLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206
           YL           +F L  I  +     TF R       + D 
Sbjct: 182 YLHGYCRLREDYRIFKLTRIRQLSIQAGTFTRRTESLEQLNDR 224


>UniRef50_A9B2R1 Helix-turn-helix type 11 domain protein n=2 Tax=Bacteria
           RepID=A9B2R1_HERA2
          Length = 322

 Score = 71.5 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 20/220 (9%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL---EYQSGYCRLRT 68
            RL  II  L+  E +S  + A  F VS RT+ RD     L  + +      +G   +  
Sbjct: 23  ERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDALSLANIPIYAVHGVNGGYGIMQ 82

Query: 69  ---AGSEMQMVPDVLI-FAHRSGLAGLF-PGLDRRLVNALL----MCDESPCVIAPANPV 119
                  +    D+       SGL  +F P    R +  +         +  +       
Sbjct: 83  EYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIKKIEAMVGQLALNRAIYLSFYAW 142

Query: 120 PSPSGALSFWRLIQ-AITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE--HE 172
              S  L   +  Q +I  +R V      +        + P  L   + TWYL       
Sbjct: 143 EGRSELLETLKTCQESILKKRLVLFDYTDKDGTITQRMIEPYELHFSESTWYLKGFCLDR 202

Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
                F L  I  +      F   D+      +  ++  L
Sbjct: 203 QAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLPQL 242


>UniRef50_B2V022 DeoR-family transcriptional regulator n=5 Tax=Clostridium
           RepID=B2V022_CLOBA
          Length = 298

 Score = 71.5 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 20/199 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGY--------- 63
           RL  I++ LV+ ++++  +LA  F VSVRT+ RD        + +    G          
Sbjct: 5   RLFSIVNILVSKKSVTATELAERFDVSVRTIYRDIEILSTNGIPICSAQGKGGGLSILDN 64

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAPANPVP- 120
             +            VL+        G    +D     + +L   +    +    +    
Sbjct: 65  YSIDKTILSDSEQKQVLMALQSVNATGQI-NVDDSFLKLRSLFRKNVIDWIEIDFSGWEQ 123

Query: 121 SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174
           S     +F  +  +I   + V +        R    + P +L+     WY+         
Sbjct: 124 SKEDKENFKIIKDSIINSKAVYISYFSNKGERSERIVEPYKLIFKGYNWYIYGYCRKRKD 183

Query: 175 IAVFTLDEIHLIQPLQETF 193
           +  F L  I  I+ L++TF
Sbjct: 184 MRFFKLTRIEKIEILKDTF 202


>UniRef50_A6VRC7 Helix-turn-helix type 11 domain protein n=3 Tax=Proteobacteria
           RepID=A6VRC7_MARMS
          Length = 328

 Score = 71.5 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 87/245 (35%), Gaps = 32/245 (13%)

Query: 13  VRLSLIISRLVA---GETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYC 64
           +R S I+  L+     E ++  +LA     S+RT+ RD  E L  + +     +   G  
Sbjct: 1   MRASRILKMLMMLQTHEKVTAAELADACETSIRTVYRDI-EALSAIGVPVYSEQGVQGGY 59

Query: 65  RLRTA---GSEMQMVPDVLIF--------AHRSGLAGLFPGLDRRLVNALLMCD------ 107
           RL              +            A + G+  L      +L  AL          
Sbjct: 60  RLLQGYRTRLNGLSAKEAETLFLAGLSGPAQKMGIDTLLADAQLKLKAALPENIRPEIDR 119

Query: 108 -ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQ 163
            +S  ++   N             L+ A+  +R V +     +G    +L P  +++   
Sbjct: 120 LQSRFLLDAPNWFSDDEKVTYLPDLMTAVLEQRCVVMQYQSWKGEINRQLQPLGIVLKGG 179

Query: 164 TWYLVAEHEGHIAVFTLDEIHLIQPLQETFRR--NDSLCRLVEDPVFIQALPHFRFIQHS 221
            WYL+A+ E  +  + +  I  +  L E F R  + +L    +D +    +  F  I   
Sbjct: 180 QWYLLAQVEQDVRTYRVSRIGSLTLLGEVFERPKDFNLTAFWQDSLRRMEVVQFPIIAEV 239

Query: 222 LLTFV 226
            LT +
Sbjct: 240 RLTSL 244


>UniRef50_C2U625 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillaceae
           RepID=C2U625_BACCE
          Length = 305

 Score = 71.5 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 70/206 (33%), Gaps = 22/206 (10%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR----ERLMYLDLEYQSGYCRLRT 68
            RL  II +L+  E LS   LA EF VS RT+ RD           +  +  +G   +  
Sbjct: 4   ERLLSIIYKLLNHEVLSASMLAEEFQVSQRTIYRDIDVICAAGFPVVSYQGSNGGYGMMD 63

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA-LLMCDESPCVIAPANPVPSPS---- 123
                +M   +L     + L  +   L     +       E    I P + V S S    
Sbjct: 64  ---GYKMDKSLLGSYDVNSLVTVLRSLSTVFEDKRAQGTIERLQTIGPDHHVTSLSVDLE 120

Query: 124 ----GALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH- 174
                  +  +L  +IT +  V          R    + P +L    + WY+        
Sbjct: 121 THRTEPDTLRQLRTSITQQNVVRFDYINAKNERTTRDMEPLKLHFKYRNWYIYGFCRTRR 180

Query: 175 -IAVFTLDEIHLIQPLQETFRRNDSL 199
               F L  +  +   QETF+ +  +
Sbjct: 181 DYREFRLSRLMNLYVTQETFQPHHEV 206


>UniRef50_D1PN27 Transcriptional regulator, DeoR family n=3 Tax=Clostridiales
           RepID=D1PN27_9FIRM
          Length = 303

 Score = 71.5 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 22/205 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL--MYLDLEYQSGYCRLRTAGS 71
           RL  I+S L+  E ++  +LA +F VS RT++RD  E L    + +    G     +   
Sbjct: 5   RLIGILSILLQREQVTAPELAEQFEVSRRTIQRDI-EALGRAGIPITTAQGAGGGISIIE 63

Query: 72  EMQMVPDVLIF----AHRSGLAGLFPGLDRRLVNALLM--CDESPCVIAPANP---VPSP 122
             ++   VL      A  +GL  L      R    L+      +  +I+         S 
Sbjct: 64  GYRVDRTVLTAPEMQAILAGLRSLDSVSGTRRYAQLMEKLSAGNSTLISGGTHMLIDLSS 123

Query: 123 SGALSFWRLIQAIT----GRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175
               S    I+AI         V       +G     +    L+ H  TWYL    +   
Sbjct: 124 WYKSSLAPKIEAIQNAMEQHHLVHFTYDAPKGTSVRSVESYYLVFHWSTWYLWGWCQTRQ 183

Query: 176 --AVFTLDEIHLIQPLQETFRRNDS 198
              +F L+ +  +    + F    +
Sbjct: 184 DFRLFKLNRMTNLS-TGDPFTPRPA 207


>UniRef50_UPI0001789548 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001789548
          Length = 317

 Score = 71.1 bits (173), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 90/233 (38%), Gaps = 29/233 (12%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66
           A RL  I+  L  G   + R LA +  VS RT+ RD          +Y +   Q G+   
Sbjct: 3   ADRLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSQGGWVLE 62

Query: 67  RTAGSE-MQMVPDVLIFAHRS---------GLAGLFPGLDRRLVNALLMCDESPCVIAPA 116
            +  +    M PD LI    S         G+   F    ++L+ +          I   
Sbjct: 63  ESYRTNLTGMTPDELISLLVSSHSPLIGDLGIRKQFDAAYQKLLASSPRSIRQDAEIIRE 122

Query: 117 NPVPSPSGALSFWR-------LIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWY 166
                 +G  S+         L +A+   R + +     E R   R+ P  L+  + TWY
Sbjct: 123 KIHIDGAGWHSYRESHPYLTVLQEALWLDRIMDIQYMKGEERVERRIHPLGLVAKRSTWY 182

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRND--SLCRLVEDP--VFIQALPHF 215
           +VAE +G +  + +  I      ++TF+R    +L    E+    F+Q LP +
Sbjct: 183 VVAESQGELRTYRVSRIVDAVMSEDTFQRPAGFNLAEYWEESLARFMQNLPQY 235


>UniRef50_B3QT91 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium
           ATCC 35110 RepID=B3QT91_CHLT3
          Length = 327

 Score = 71.1 bits (173), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 67/222 (30%), Gaps = 41/222 (18%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL------DLEYQSGYCRL 66
            R+  I  +L A +  + R LA EF VS ++++RD     + L      D   +  Y   
Sbjct: 11  YRMKRIDEKLRAKKYPNCRTLADEFEVSEKSVQRDLEHMRVLLGAPIAYDRSKRGFYYTE 70

Query: 67  RTAGSE--MQMVPDVLIFAHR-----------------SGLAGLF---PGLDRRLVNALL 104
                        +   F                    S +  +F   PG         +
Sbjct: 71  PNYFLPSVYLKHGEAKAFGVLQRILKQYEETPYYKELESAMHRVFENLPGKSDPFSEEEI 130

Query: 105 MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLL 159
              E P       P   P     F ++ +A   R  + +              + P  L 
Sbjct: 131 YSFEQP------PPPSRPLDREHFQQIDRAANRREVIDITYYAASRNETSRRGVHPYHLH 184

Query: 160 IHQQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
             Q TWYL+A  E    +  F L+ I  I+     F   +  
Sbjct: 185 FAQGTWYLIAHCELRRELRFFALNRISEIRETSRPFAIPEDF 226


>UniRef50_A9KRE5 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KRE5_CLOPH
          Length = 299

 Score = 70.3 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 17/197 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGY--------- 63
           RL  I   L+  ++++ ++LA  F VSVRT+ RD     L  + +    G          
Sbjct: 5   RLFEITYLLLNKKSMTAKELAEHFEVSVRTIYRDIDALSLAGIPVYTTKGKGGGISLMES 64

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV-PSP 122
             L  A    +   ++L                 R ++++    E+  +    +    + 
Sbjct: 65  YVLNKAVLSEKEQENILASLQGLHAVNRSEDATLRKLSSIFGKKEASWIEVDFSRWGSNS 124

Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRRCER----LAPCRLLIHQQTWYLVAEHEGH--IA 176
                F  + QAI  ++ + +I            + P +L+   Q+WYL A  +      
Sbjct: 125 EEKEKFELIKQAILEKQELEMIYHNSSGHESKRIVFPLKLIFKAQSWYLYAYCKEKKDYR 184

Query: 177 VFTLDEIHLIQPLQETF 193
           +F L  +  ++   + F
Sbjct: 185 IFKLRRVKNLKMNSKKF 201


>UniRef50_A8LFK5 Helix-turn-helix type 11 domain protein n=5 Tax=Actinomycetales
           RepID=A8LFK5_FRASN
          Length = 337

 Score = 70.3 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 80/238 (33%), Gaps = 45/238 (18%)

Query: 22  LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-----GYCRLRT-AGSEMQM 75
           L +G T +V +LA   GV  RT+RR + + L+ LD+  +S     G  RL         M
Sbjct: 15  LQSGGTRTVAELADRLGVDGRTVRR-YVQHLIDLDVPVESVRGRYGGYRLAAGYRLPPLM 73

Query: 76  VPDVLIFAHRSG-----------------------LAGLFPGLDRRLVNALLMCDESPCV 112
           + D    A   G                       +  + P    R ++A+L       +
Sbjct: 74  LNDDEALAVLLGLIASRRAGLLTTTGTASETAAAKIRRVLPERLARGLDAVLD-----SL 128

Query: 113 IAPANPVP-SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167
              A P   + +       +  A+   R +++        R    L P  L+ H   WY+
Sbjct: 129 AFTAPPGEATAAETAVVLPIADAVRHHRPISIRYTAADGRRSERTLHPYGLVAHNGRWYV 188

Query: 168 VAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
                  G    F LD I   + L  +F   D L         +  L +  +    +L
Sbjct: 189 TGADPGIGEDRTFRLDRIEHARTLPGSFEPPDGLD---PAQRVLSGLANAPYRHEVIL 243


>UniRef50_A6F2P0 Transcriptional regulator, DeoR family protein n=2
           Tax=Alteromonadales RepID=A6F2P0_9ALTE
          Length = 318

 Score = 70.3 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 68/220 (30%), Gaps = 36/220 (16%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR--ERLMYLDLEYQSGYCRLRTAGS 71
           R+  ++  L     +   +LA   GV  RT+RR     E L    +  + G        +
Sbjct: 7   RVLTVLELLQTHGQIGGAELAERLGVDRRTIRRYITVLEELGI-PVMTEQGRYGGYRLVA 65

Query: 72  EMQMVPDVLI------------FAHRSGLAGLFP-------GLDRRLVNALLM-----CD 107
             ++ P +               A + GLA   P        L+R +   L        D
Sbjct: 66  GFKLPPMMFTDEETLAVSLGLLAARQLGLADAAPAIASVQAKLERVMPADLKKRVRGVSD 125

Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQ 163
            +  ++    P        +     +A+   R V         G     + P  L+  Q 
Sbjct: 126 TTRVILPRGEPSLDDRALQNLTVATEAM---RSVGFTYHSPEHGGIDRSVDPYGLVFRQG 182

Query: 164 TWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201
            WYL         +  F LD I  +  L  TF+R      
Sbjct: 183 RWYLTGFCHLRQAMRSFRLDRISHVHLLTATFQRPPDFDA 222


>UniRef50_C3XIJ3 Aspartate ammonia-lyase n=1 Tax=Helicobacter bilis ATCC 43879
           RepID=C3XIJ3_9HELI
          Length = 304

 Score = 70.0 bits (170), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 76/220 (34%), Gaps = 24/220 (10%)

Query: 14  RLSLIISRLVAGET---LSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ--------SG 62
           R+S I + L   E    +  ++LA EF VS+RTLRRD       +  EY          G
Sbjct: 3   RISKIYTALHNPENNGVICAKELAKEFSVSLRTLRRDVE----NMGAEYSYKKDKIYFHG 58

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD--RRLVNALLMCDESPCVIAPANPVP 120
           +   +           +  FA+  G A     L     L +       +      +N   
Sbjct: 59  HYTTKENDELSMAFLLLKSFAYSMGGATKTQMLSLLENLESKSQPKQSTDIFFTRSNLEE 118

Query: 121 SPSGALSFWRLIQAITGRRRVTLIA-------EGRRCERLAPCRLLIHQQTWYLVAEHEG 173
                 S   L +AI     +           +      + P ++L     WYL+     
Sbjct: 119 ITLDTESILLLQKAIKEHMIIQFKFLQELNNTKTHTQREVLPLKILNFNGEWYLLGLESS 178

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
            +  F L+ I  I+ +++    ++ +   +++ +    +P
Sbjct: 179 VMKKFYLNNIIDIKEVRQGESVSEEVLGRLDNALNAWFVP 218


>UniRef50_A4XCA7 Helix-turn-helix, type 11 domain protein n=7 Tax=Actinomycetales
           RepID=A4XCA7_SALTO
          Length = 332

 Score = 70.0 bits (170), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 29/214 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRT 68
           RL  ++  L A   ++  +LA E GVS RT+ RD           Y +     GY  +  
Sbjct: 15  RLFSMVLLLQARGAMTAAELAGEVGVSERTVYRDIIALAAAGVPVYAEQGRHGGYRLVDG 74

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLF-PGLDRRLVNALLMCDESPCVIAPANPVP------- 120
             + +  +      A    L GL+ P  D  L + L           PA           
Sbjct: 75  YRTRLTGLSRAEAEALF--LLGLYGPARDMGLGDVLATAQLKVSAALPAELRDAAAQAAQ 132

Query: 121 -----------SPSGALSFWRLIQAITGRRRVTLIAEGRRC--ERLA-PCRLLIHQQTWY 166
                            +   L++A+     V L           +  P  +++    WY
Sbjct: 133 RFHLDVPGWFHDSDPPPALSVLVRAVWQDLTVILRYHRHDEVTRTVQQPYGVVLKAGIWY 192

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           LVA     + V+ +D +  ++   + F R +S  
Sbjct: 193 LVARVGADLRVYRVDRVVGVEVTDQRFVREESFD 226


>UniRef50_Q9RY95 Repressor protein, putative n=1 Tax=Deinococcus radiodurans
           RepID=Q9RY95_DEIRA
          Length = 316

 Score = 69.6 bits (169), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 89/252 (35%), Gaps = 39/252 (15%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL--DLEYQ---SGYCRL 66
           ++R+  ++  L A E ++  +LA    VS RT++R +  RL  L   +E +    G  RL
Sbjct: 6   SLRVLTVLELLQAREEVTGAELARRLEVSPRTVQR-YVARLQDLGIPVEGRRGVGGAYRL 64

Query: 67  RTA---------GSEMQMVPDVLIFAHRSGLAGLFP-------GLDRRLVNALLMCDES- 109
           +           G E   +   L      GL+ L P        L R L   L     + 
Sbjct: 65  KPGFRLPPLMFTGEEALALALGLRALQHLGLSDLLPAAEVAGAKLSRTLPPELRDTVAAL 124

Query: 110 -PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164
                   +P  + + A     L QA    +R  L             +   R++     
Sbjct: 125 EQVAQLSVSPWVTSTDARLLTTLFQAAREGQRAELTYRSGAAQHTEREVEVYRVVHVDGR 184

Query: 165 WYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA-LPHFRFIQHS 221
           WY V      G +  F LD I   +  +ETF        L     F+Q  LP      + 
Sbjct: 185 WYAVGHCRLRGALRCFRLDRIETCRLREETFTPPADFDAL----AFLQQELPAAH--PYE 238

Query: 222 LLTFVPADSPPE 233
           +  ++ A  PPE
Sbjct: 239 ISVWLAA--PPE 248


>UniRef50_C0ZCT1 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZCT1_BREBN
          Length = 309

 Score = 69.6 bits (169), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 26/225 (11%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEY----QSGYCRLR 67
            RL  I+  L+    +S R+L+  F VS+RT+ RD        + +        GY  + 
Sbjct: 4   ERLLAIVIMLLNKRRVSARELSDHFEVSLRTVYRDLETINAAGIPIVAYPGVSGGYEIME 63

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM-------------CDESPCVIA 114
               + Q +    + A  + L G+    D + +  LL                 +  V+ 
Sbjct: 64  NFTIDRQYLSLDELVAVIAALKGVHSSTDDKQIGQLLEKIKALLTTAPSSLQGSAHPVVY 123

Query: 115 PANPV-PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA 169
             NP   +P+ A    +L +AI  R RV +I            + P  L+I    WY+  
Sbjct: 124 DFNPWGSTPAIAEKVNKLREAIEKRLRVRIIYTKIQGDATERTIEPVTLIIKGYVWYIYG 183

Query: 170 E--HEGHIAVFTLDEIHLIQPLQETFRRNDS-LCRLVEDPVFIQA 211
                    +F L  I  +  L E F    + + +L     +  A
Sbjct: 184 YCLQRQEDRLFRLSRIADMSVLTEEFSPRPNQIDKLEWLEEWDTA 228


>UniRef50_D0RTY4 DeoR-family transcriptional regulator n=3 Tax=Streptococcus
           RepID=D0RTY4_9STRE
          Length = 308

 Score = 69.2 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 74/198 (37%), Gaps = 22/198 (11%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL--EYQSGY------ 63
            RL  I+  L+  + ++ +++A  F +S RT+ RD     L  + +  E           
Sbjct: 4   ERLIYILLALLNKKQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFYIPD 63

Query: 64  -CRLRTAGSEMQMVPDVLIFAHRSGL---AGLFPGLDRRLVNALLMCDESPCVIAPANPV 119
             ++ ++    +    ++  +   G       F  ++ +L +  +  + +P      +  
Sbjct: 64  DYKMDSSFFTEEEKQFIINMSQNVGKIVGRPSFDSIEHKLTSQEVTDNVNPFYFDLTSWS 123

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175
            + +       + QAI   ++V+       + R    + P RL+     WY++      +
Sbjct: 124 LNTNY---LLEIEQAIQTGKKVSFSYFSKKQERSLRTILPYRLIFKLNAWYVIGYCFEKL 180

Query: 176 --AVFTLDEIHLIQPLQE 191
              +F L  I  +  + E
Sbjct: 181 DFRIFKLSRIRDLLIVDE 198


>UniRef50_C9NKS1 Helix-turn-helix type 11 domain protein n=5 Tax=Streptomyces
           RepID=C9NKS1_9ACTO
          Length = 348

 Score = 69.2 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 69/220 (31%), Gaps = 37/220 (16%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66
           A RL  ++  L +  +++  +LA E  VS RT+ RD +        +Y D   ++G  RL
Sbjct: 30  AARLIKMVLLLQSRPSMTAAELARELEVSARTVTRDAQALSEAGVPVYAD-RGRAGGYRL 88

Query: 67  -----------------------RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL 103
                                    +      + D    A     A L P      +   
Sbjct: 89  VGGYRTGLTGLARHEAEALFLSGLPSALREMGLDDAASVARLKVSAALLPS-----LRDA 143

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLI 160
                    +        P+       + +A+   R V        G     LAP  L++
Sbjct: 144 PRTASQRFHLDAPGWYHDPATPELLPAVAEAVWDDRLVRARYRRTSGEVERELAPYGLVL 203

Query: 161 HQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
               WYL A     + V+ +D    +   +  F R++   
Sbjct: 204 KAGVWYLCARAGKDVRVYRIDRFTAVAVSETRFVRDEEFD 243


>UniRef50_B1BVT1 Transcriptional regulator, DeoR family n=3 Tax=Bacteria
           RepID=B1BVT1_CLOPE
          Length = 299

 Score = 69.2 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 20/205 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  II  L+     +  +LA +F VSVRT+ RD          +Y       G      
Sbjct: 5   RLFRIIYYLIEKGKSTAPELAKKFEVSVRTIYRDIDVISSVGIPIYATQGKNGGIVIDED 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP-------S 121
              +  M+         SGL G+F   +    N LL    +   +   N +         
Sbjct: 65  FTLDKSMLSQKEKEQILSGLQGVF-ATNGNNTNELLTKLGALFHMQTKNWIEVDFSDWVQ 123

Query: 122 PSGALS-FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174
              A + F  +  AI  R  ++              + P +L+   + WY+         
Sbjct: 124 CQPAQNIFNDIKNAILDRHIISFEYFNNLGNSIFRHIQPLKLIFKSKAWYVYGFCMLRND 183

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSL 199
              F L  I  ++  ++ F   +++
Sbjct: 184 YRFFKLTRIKHLKITEKQFIPPETI 208


>UniRef50_C1IA92 Transcription regulator n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1IA92_9CLOT
          Length = 301

 Score = 69.2 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 73/200 (36%), Gaps = 18/200 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  II  L+  + ++ ++LA  F VS RT+ RD  +       +Y+      G   L  
Sbjct: 8   RLFEIIYILLDKKNVTAKELAEHFEVSQRTIYRDIEDLSQSGVPIYMTKGKGGGISLLSD 67

Query: 69  AGSEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAPANPVPS 121
                 ++         + + GL       F G+  +L + L   +E+   +  +N   +
Sbjct: 68  FILNKAILSQEEKKEILAAMQGLNAVNKSEFNGVLSKLSSFLGGDNENWIEVDFSNWDKN 127

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEHEGHI-- 175
            +    F  +  +I  +  ++              + P +L+   Q WYL A        
Sbjct: 128 NTLGEKFTTIKNSIINKNLISFEYFNSNGKLLERIVEPLKLVFKGQGWYLYAYCREREDN 187

Query: 176 AVFTLDEIHLIQPLQETFRR 195
             F L  +  I  + E F R
Sbjct: 188 RFFKLTRMSNINIILENFNR 207


>UniRef50_B8FUA6 Helix-turn-helix type 11 domain protein n=3 Tax=Clostridiales
           RepID=B8FUA6_DESHD
          Length = 302

 Score = 69.2 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 19/217 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTAGSE 72
           RL  II+ L+  E  ++ +LA  F VS RT++RD        + +  + GY    +    
Sbjct: 5   RLIGIITILLQKERATIPQLAERFEVSCRTIQRDIDAIGQAGIPIVSRQGYGGGLSIADG 64

Query: 73  MQMVPDVLI----FAHRSGLAGLFPGLDRRLVNALLMC---------DESPCVIAPANPV 119
            ++   VL      A  +G+  +           L+            E   ++      
Sbjct: 65  YKLDKTVLTKKELQAILTGIRSIDSISKTTYGQTLIEKFANGKAAVLAEQDMILIDLASW 124

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174
              S +    +L QAI  R +V  +    +G     + P  +L     WY+      +  
Sbjct: 125 YQDSLSDKIEQLRQAIFNREKVFFVYYSDKGESERLIEPYLILFKWAAWYVYGYCLTKNE 184

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
             +F L+ +  ++    T+   +     +E   + Q 
Sbjct: 185 YRLFKLNRLWKLKNTNLTYIPRNIPEGKLEFERYFQT 221


>UniRef50_C5EHW4 Helix-turn-helix type 11 domain-containing protein n=5
           Tax=Clostridiales RepID=C5EHW4_9FIRM
          Length = 309

 Score = 68.8 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 23/205 (11%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-----------RLMYLDLEYQSG 62
           RL  I+S L+  E ++   LA +F VS RT+ RD  +           R +   +    G
Sbjct: 5   RLIGILSVLLQKEKVTAPYLADKFEVSRRTINRDIEDICKAGIPIVTTRGVNGGISIMEG 64

Query: 63  YCRLRT--AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN--- 117
           Y   +T     EMQ +   L         G +  L  +L             I       
Sbjct: 65  YRMDKTLLTSREMQSILAGLRSLDSVSFTGQYRQLMDKLSVGNHDLIHVDSHIMINLSSW 124

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174
              + +  +  ++  +AI   R          G     + P  L+    +WY+       
Sbjct: 125 YKETLTPKIHLFQ--EAIEECRLTRFSYFSPSGETSRCIEPYTLVFQWSSWYVWGYCCLR 182

Query: 175 I--AVFTLDEIHLIQPLQETFRRND 197
               +F L+ +  ++  QE F + +
Sbjct: 183 EDYRMFKLNRMADLELCQEHFTKRN 207


>UniRef50_B0N590 Putative uncharacterized protein n=2 Tax=Bacteria
           RepID=B0N590_9FIRM
          Length = 304

 Score = 68.8 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 63/204 (30%), Gaps = 28/204 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL------MYLDLEYQSGYCRLR 67
           RL   I  L+  +  + ++LA  F VS RT+ RD  +RL      +Y +   + G     
Sbjct: 5   RLFETIYYLIEHKQTTAKELAEHFEVSTRTIYRDL-DRLIVAGFPIYANQGAKGGIYIDS 63

Query: 68  TAGSEMQMVPDVLIFAHRSGL-----------AGLFPGLDRRLVNALLMCDESPCVIAPA 116
               +     D         L           AGL   +        L   E        
Sbjct: 64  EFVLDKMTFSDDEQNQILMALQCIERLQDRDEAGLIDKMAALFNKNKLDWIEVDFTTWHH 123

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWYLVAE-- 170
           N   +      F  + +AI  ++ +          +    + P +L     TWYL     
Sbjct: 124 NNSQN----EKFETIKKAIFEQKEIKFKYINSYGEKSQRCVFPNKLFFKANTWYLQGYCL 179

Query: 171 HEGHIAVFTLDEIHLIQPLQETFR 194
            +    VF L  I  +      F+
Sbjct: 180 QKNSYRVFRLTRIIELLTTSNYFQ 203


>UniRef50_Q1JX03 Helix-turn-helix, type 11 n=1 Tax=Desulfuromonas acetoxidans DSM
           684 RepID=Q1JX03_DESAC
          Length = 319

 Score = 68.4 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 30/203 (14%)

Query: 24  AGETLSVRKLAAEFGVSVRTLRRDFRERLMYL---DLEY---QSGYCRLR--------TA 69
            G   +  KLA +F +S RT +RD    L       LEY   + GY              
Sbjct: 17  QGNYPNAPKLARQFEISERTAKRDIDA-LTNQIGAPLEYNATRRGYRYSDASYSLTWTRF 75

Query: 70  GSEMQMVPDVLIFAHRSG----LAGLFPGLDRRLVNAL----LMCDESPCVIAPANPVPS 121
             +  M   +L     SG    L+G    L  +++  L    +  +      +       
Sbjct: 76  SHQEIMAMLILRRMLDSGGASPLSGELNALCEKMLTNLEQCGIDREHLDHCFSANWSHYI 135

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVA--EHEGH 174
           P     F +L +A+  RR+V    +           + P  L  +  +WYL++  E +  
Sbjct: 136 PVDETIFQQLGEAVLTRRKVYFSYQNPTRPQASSRMVHPYHLQHYSGSWYLISWCEEQQD 195

Query: 175 IAVFTLDEIHLIQPLQETFRRND 197
              F L  I  +      F   D
Sbjct: 196 WRTFQLSRISQMHLTDTPFDYRD 218


>UniRef50_D2Q2S8 Helix-turn-helix type 11 domain protein n=2 Tax=Actinomycetales
           RepID=D2Q2S8_9ACTO
          Length = 320

 Score = 68.4 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 74/223 (33%), Gaps = 42/223 (18%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY---LDLE-YQSGYCRL 66
           +  R+  +++ L  G   S  +L++  GVS RTLRRD      Y   +D +  + G+ RL
Sbjct: 1   MTERMLALLATLQTGRAFSGAELSSRLGVSARTLRRDIDRLRGYGYPVDTQPGRGGFYRL 60

Query: 67  RTAG-SEMQMVPDVLIFAHRSG-------------------------LAGLFPGLDRRLV 100
                    ++ D    A   G                         +  L PG  R   
Sbjct: 61  TAGRALPPLVLDDDEAVATLLGLATLAATGEAGEGRLDEAATRAYGKIDQLLPGRLRPRA 120

Query: 101 NALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPC 156
            A+    E+   +APA      +       L  AI  RR      +         R+ P 
Sbjct: 121 AAIRSTLEAAHQLAPAPSPQLLAD------LADAIRARRTAVFEYQSPTGRPSSRRVEPH 174

Query: 157 RLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRND 197
           RL+     WY VA         VF  D I  +Q +   F    
Sbjct: 175 RLVHLNLRWYFVAWDVEKQDWRVFRCDRIEQLQIMTSQFEPRP 217


>UniRef50_B5HKG2 Truncated DeoR-family transcriptional regulator n=1
           Tax=Streptomyces pristinaespiralis ATCC 25486
           RepID=B5HKG2_STRPR
          Length = 273

 Score = 68.4 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 67/217 (30%), Gaps = 37/217 (17%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRER--LMYLDLEYQSGYCRL 66
           A RL  ++  L +  +++  +LA E  VS RT+ RD     E    +Y D   ++G  RL
Sbjct: 3   AARLIKMVLLLQSRPSMTGAELARELEVSERTVTRDALALSEAGVPVYAD-RGRAGGYRL 61

Query: 67  -----------------------RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL 103
                                           + D    A     A L P      +   
Sbjct: 62  IGGYRTRLTGLGRDEAEALFLSGLPGALRDMGLEDAASAARLKVSAALLPS-----LRNA 116

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLI 160
                    +        P        L +A+   RRV              L P  L++
Sbjct: 117 PESAARRFHLDAPGWYQEPKTPDLLPVLAEAVWDDRRVQAAYRRGDTEVERLLEPYGLVL 176

Query: 161 HQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRND 197
               WYL A  +G + V+ +D     +   E F R+ 
Sbjct: 177 KAGVWYLCARADGTLRVYRIDRFSSAEADGERFERDG 213


>UniRef50_A0QS56 DeoR-family protein transcriptional regulator n=7
           Tax=Actinomycetales RepID=A0QS56_MYCS2
          Length = 320

 Score = 68.4 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 81/229 (35%), Gaps = 37/229 (16%)

Query: 1   MTQAERRHDRLAVRLSLIISR-LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-- 57
           M +      R+   L L+ SR +  GE     +LA   GV+ R++RRD  ERL  L    
Sbjct: 1   MARTVDTTGRVVQLLGLLQSRRVWTGE-----ELAERLGVTGRSVRRDI-ERLRELGYPV 54

Query: 58  ---EYQSGYCRLRTAGS--EMQMVPD-------VLIFAHRSGLAGL-------FPGLDRR 98
              + Q G  +L    +   + + PD        L  A    +AG+          LD+ 
Sbjct: 55  HASKGQGGGYQLGAGMALPPLLLDPDEAVAMAVCLRLAAGGSVAGVGESALRALSKLDQV 114

Query: 99  L---VNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCE 151
           +   + + +       V    N   +         L +A   R  V+         +   
Sbjct: 115 MPARLRSQVAAIHDATVTLGPNATDTAVAPDVLMTLARACRDREHVSTGYTDLRGNQTQR 174

Query: 152 RLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDS 198
           RL P +L+   + WYL+A            LD +  ++    TF    +
Sbjct: 175 RLEPYQLVTTGRRWYLMAYDRDREDWRSLRLDRMSDVRATGTTFTARPA 223


>UniRef50_A9KM28 Helix-turn-helix type 11 domain protein n=2 Tax=Clostridium
           RepID=A9KM28_CLOPH
          Length = 302

 Score = 68.0 bits (165), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 76/204 (37%), Gaps = 21/204 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTAGSE 72
           RL  II+ L   + ++   LA +F VS RT+ RD  +     + +    G     +    
Sbjct: 5   RLIGIITVLQNNKKVTAPYLAKKFEVSRRTINRDIEDICKAGIPIVTTQGNDGGISIMEG 64

Query: 73  MQMVPDVLI----FAHRSGLAGLFPGLDRRLVNALLMCDESP--CVIAPANPVPSPSGAL 126
            ++   +       A   GL   F  +     +  L+   SP    +       S   + 
Sbjct: 65  FKLDTTIFTTEELEAILVGLKS-FDSVSAHSASHKLIHKISPNRPTLMSLADSISIDLSS 123

Query: 127 SFW--------RLIQAITGRRRVTLIAEGRR---CERLAPCRLLIHQQTWYLVAE--HEG 173
            +         +L +AI  +R V      ++    +++ P +++    +WY+      + 
Sbjct: 124 HYKDSLAPKIAQLREAIQQKRVVMFHYYYKKGEDDKKIEPYQIVFQWSSWYVFGFCLKKR 183

Query: 174 HIAVFTLDEIHLIQPLQETFRRND 197
              ++ L+ +  +Q  +E F + +
Sbjct: 184 EFRLYKLNRLWDLQTTEEEFIQRE 207


>UniRef50_A8SDS7 Putative uncharacterized protein n=1 Tax=Faecalibacterium
           prausnitzii M21/2 RepID=A8SDS7_9FIRM
          Length = 314

 Score = 68.0 bits (165), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 71/227 (31%), Gaps = 45/227 (19%)

Query: 14  RLSLII---SRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQ--------S 61
           RL  I+     LV G  L+ ++ A  FGVS +T++RD    R  + D E +         
Sbjct: 5   RLDRILYIQQVLVQGGVLNKQQTADRFGVSEKTIQRDLDTLRNHFADSEPRREILYNSAK 64

Query: 62  GYCRLRTAGSEMQMVPDVLIFAHR------SGLAGLFPGLDRRLVNALLM----CDESPC 111
           G   L    S      ++L                +FP LD +LV               
Sbjct: 65  GGYLLDDTLSRFLTSSEILAVCKILLESRSMVKEEMFPILD-KLVRVCTPLDRLNQVKDL 123

Query: 112 VIAPANPVPSPSGALSF----WRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQ 162
           +         P     F    W +  A+     + +          R   + P  +L  +
Sbjct: 124 ISNERFHYVEPQHGRKFIESLWEIGTAVENHNVMEITYCRTHDGETRVRTIEPVGILFSE 183

Query: 163 QTWYLVAEHEG-------------HIAVFTLDEIHLIQPLQETFRRN 196
             +YL A  EG                ++ +D I   + L   F + 
Sbjct: 184 YYFYLAAFIEGIDKDKHFQNPQDNSPTIYRIDRIQNYKTLDRHFAQR 230


>UniRef50_A3CLQ0 Transcriptional regulator, putative n=3 Tax=Streptococcus
           RepID=A3CLQ0_STRSV
          Length = 299

 Score = 67.6 bits (164), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 18/211 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE----YQSGYCRLRT 68
           RL  I+  L+     +  +LA+ F VS+RT+ RD  +  L+ + +        G   ++ 
Sbjct: 5   RLFKILYLLLEQGRTTAPELASLFEVSIRTIYRDVDKLSLVGIPIYCNPGKGGGIFLMKD 64

Query: 69  AGSEMQMVPDVLI---FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
              +  +  +       A   GL  L  G     ++ L    +                 
Sbjct: 65  FVLDKALFSESERDELLAALQGLQILTDGEQVETLSKLQSLFQVQATSWLEVDFTDWRKK 124

Query: 126 LS----FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA--EHEGHI 175
                 F  + QAI  RR ++         R   ++   +L+   Q WY+          
Sbjct: 125 ADQKELFDTIKQAILQRRVLSFSYLNGRGEREQRKIEALKLVFKSQNWYVAGFCRLRQAP 184

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206
             F L  +   Q L+E F++     +   + 
Sbjct: 185 RFFKLSRMRDCQMLEERFKQRVLDEKFSPEE 215


>UniRef50_D2QLY3 Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale
           DSM 74 RepID=D2QLY3_9SPHI
          Length = 315

 Score = 67.6 bits (164), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 70/213 (32%), Gaps = 28/213 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-YCRLRTAGS 71
           RL+ I+  L     +  ++LA  FG+S+RT+ RD R      + +  ++G    L     
Sbjct: 6   RLTAILIHLQTKRVIRAQELADRFGISLRTVYRDVRSLEEAGVPIGAEAGVGYFLTDYNL 65

Query: 72  EMQMVPDVLIFAHRSGLAGLFPGLDRRLVN--------------ALLMCDESPCVIAP-- 115
              M  +    A   G   L      + V                    +    + A   
Sbjct: 66  PPVMFTNAEASALLLG-GKLIEKWTDQSVRTEFESALYKIKSVLKRPDQEHLDSLEAHIN 124

Query: 116 --ANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYLV 168
                 P+  G  S  ++  AI  +  + L             R+ P  L  ++  W+L+
Sbjct: 125 VAKPLYPTTEGEGSLNKIQHAIAQQHVLDLQYHSNYNNAETQRRVEPVGLYHYRMNWHLI 184

Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
           A          F +D I  +    E F R + L
Sbjct: 185 AFCQIRQDYRDFRVDRIRQLTDTAERFSRREHL 217


>UniRef50_B9M6Q6 Helix-turn-helix type 11 domain protein n=5 Tax=Geobacter
           RepID=B9M6Q6_GEOSF
          Length = 336

 Score = 67.6 bits (164), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 47/236 (19%)

Query: 3   QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSG 62
           +  +++ + A RL  II  + A   +++ +LA E GV+ RT+ RD            ++G
Sbjct: 5   KPAKKYSQ-AGRLHDIIRLIEARHGITIEELAEEGGVNRRTIHRDLNA-------IQEAG 56

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLA-GLFPGLDRRLVNALLM-------CDESPCVIA 114
           Y  +    +  +    +  F     +   L   +    + + L         ++   +  
Sbjct: 57  YPLVSDWVNGSKTYRFLTRFKDVPPINFTLQELMTLSFLRSQLDILKGTSFHEDMDAIFH 116

Query: 115 PANPVPSPSGALSFWR-------LIQAITGRRRV---------TLIAEGRR--------- 149
             N V  P  A    R       L+Q       V          L+ + R          
Sbjct: 117 KVNSVLPPRYAAHMDRIARVSLPLLQGARDYSGVAEQLKTIRDALLYQYRLTITYGPPTK 176

Query: 150 ----CERLAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199
                 ++ P  L+ ++   YL+        I  F  + I  +Q  +E F   +  
Sbjct: 177 KSAEEYQVDPYTLIYNKGGLYLLGYAHNRRAIRTFAAERIKKVQVTKERFEMPEEF 232


>UniRef50_UPI000050FDF4 DeoR family transcriptional regulator n=1 Tax=Brevibacterium linens
           BL2 RepID=UPI000050FDF4
          Length = 332

 Score = 67.3 bits (163), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 73/225 (32%), Gaps = 48/225 (21%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF----------------------RER 51
           RL  ++  L AG T +  +L A FGV+ R++RRD                         R
Sbjct: 6   RLLSLLGMLAAGRTYTAGELGAHFGVTPRSVRRDIASLRELGYVIESLPGATGGYRAHSR 65

Query: 52  LMYLDLEYQSG-----YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC 106
            +   L+ Q+G        L           DV     +  L  + P +  + +  +   
Sbjct: 66  TVLPPLQLQTGEALATAVGLSLLNGAGLSTTDVESATAK--LRTMLPPVMHKTIGDI--- 120

Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-----------ERLAP 155
             +  V+    P    +  ++      AI  R  +T   E RR             R+ P
Sbjct: 121 STAVSVLPGHEPGVDMTAVMTT---TSAIASRNVLTFAHEKRRPTRSETRSETTQRRVEP 177

Query: 156 CRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDS 198
            R+++    WYL           VF LD +  I      F   D 
Sbjct: 178 VRMVVLGGHWYLYGWDLTRSDWRVFRLDRMSEIHETTFAFAPRDH 222


>UniRef50_B8FW42 Helix-turn-helix type 11 domain protein n=3 Tax=Clostridiales
           RepID=B8FW42_DESHD
          Length = 298

 Score = 67.3 bits (163), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 24/202 (11%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY--LDLEYQSGY-------- 63
           RL  II  L+   T++  +LA  F VS RT+ RD  E L    + +    G         
Sbjct: 5   RLFEIIYILLENRTITAAELAERFEVSARTIYRDV-EILAQGGMPIYMSKGKGGGISLLP 63

Query: 64  -CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
              L  A    +   ++L          L        ++ L     +           S 
Sbjct: 64  DFILNKAVLTEEEKSEILSSLQAFNAVNL--SKSETALSKLTSMLGAKNTDWIEVDFSSW 121

Query: 123 SGALS----FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA--EHE 172
               +    F  +  AI  ++ +T +       +    + P +L+     WYL       
Sbjct: 122 GHFENDRAYFENIKTAIIEKKIITFMYASGKAEKLLREVLPLKLVFKGAAWYLYGYCTLR 181

Query: 173 GHIAVFTLDEIHLIQPLQETFR 194
                F L  I  +      F 
Sbjct: 182 RDYRFFKLRRITELAVTDTGFE 203


>UniRef50_A6DE69 Transcriptional regulator, putative n=1 Tax=Caminibacter
           mediatlanticus TB-2 RepID=A6DE69_9PROT
          Length = 305

 Score = 66.9 bits (162), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 31/210 (14%)

Query: 30  VRKLAAEFGVSVRTLRR---DFRERLMYLDLEYQSGYCR------LRTAGSEMQMVPDVL 80
           ++  A  + ++VRT +R   D  E         + G         L     +   + D+ 
Sbjct: 22  LKDFANRYEINVRTAQRYKEDVEEIFDIKLKMLKKGCYIAPDFKDLNKVLIDKGSIEDLD 81

Query: 81  IFAHRSGLAGL----FPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAIT 136
             A+   +       F G+D +++N  L   E    I  + P         F ++ +AI 
Sbjct: 82  KLAYLLMIIDKNLIKFLGVDEKIINRYL--KEENFFIVKSLPFEELRSLEIFNKIKKAIK 139

Query: 137 GRRRVTLIAE---GRRCERLAPCRLLIHQQTWYLVAEHEGHI----AVFTLDEIHLIQPL 189
            R+ + +          + + P +++  +  WYL       I        +  I  I+  
Sbjct: 140 YRQYLKITYNALKEEIFDDIKPIKIVFAEGNWYLAVISNDKINNGFKFLRISYIKTIERK 199

Query: 190 QETFRRNDSLCRLVEDPVFIQALPHFRFIQ 219
           ++ F+R+      +++         F+ I 
Sbjct: 200 KKEFKRDKEAEEFLKN---------FQSIW 220


>UniRef50_B7HZL2 HTH domain family n=31 Tax=Bacillus RepID=B7HZL2_BACC7
          Length = 313

 Score = 66.9 bits (162), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 32/218 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGY-------CR 65
           RL  I+  L   +T++ + LA +F  S+RT+ RD        + +    G+         
Sbjct: 6   RLLAILIELQRKQTVTAQSLAEKFETSIRTIYRDMDALNESGVPIYSMPGHGYSLMDGYF 65

Query: 66  LRTAGSE--------------MQMVPDVLIFAHRSGLAGL---FPGLDRRLVNALLMCDE 108
           L                     +          RS    L    P   ++    L     
Sbjct: 66  LPPIQLTPEEAVTLLLGGDYIEKTFTSSFSVHARSAKEKLEIVLPADQQKKAQELRETFR 125

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-----ERLAPCRLLIHQQ 163
               +                 L ++I   + ++      R        + P  L+    
Sbjct: 126 FLSPMFSHQQSEQEKLENQLLLLQESIQKEQAISFSYRKPRETTKIKRTVHPYGLVNISG 185

Query: 164 TWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
            WY+VA       I  F LD +  +Q  QE F +    
Sbjct: 186 IWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDF 223


>UniRef50_B4UYC1 Helix-turn-helix type 11 domain containing protein n=1
           Tax=Streptomyces sp. Mg1 RepID=B4UYC1_9ACTO
          Length = 335

 Score = 66.5 bits (161), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 42/210 (20%)

Query: 22  LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRT-AGSEMQM 75
           L +G   +V +LAA   V  RT+RR + + L+ LD+       + G  RL         M
Sbjct: 8   LQSGGLRTVAELAARLEVDERTVRR-YADHLLDLDVPVESVRGRHGGYRLAAGYRMPPLM 66

Query: 76  VPDVLIFAHRSG-----------------------LAGLFPGLDRRLVNALLMCDESPCV 112
           + D    A   G                       +  + P    R ++A+L       +
Sbjct: 67  LSDDEALAVLLGLVAGQRAGLMSAAGTASETAAAKIRRVLPERLGRRLDAVLD-----SL 121

Query: 113 IAPANPVPSPSGALS-FWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167
                P        +    +  A+   R V++             L P  L+ H   WY+
Sbjct: 122 AFTTPPRTPAVPETAVLLAIADAVRHHRPVSIRYTAADGRHSERTLHPYGLVAHSGRWYV 181

Query: 168 VAEHE--GHIAVFTLDEIHLIQPLQETFRR 195
                  G    F LD I   + L  TF  
Sbjct: 182 SGGDPAIGEERTFRLDRIADARTLPGTFDP 211


>UniRef50_C6D1B9 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6D1B9_PAESJ
          Length = 306

 Score = 66.5 bits (161), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 27/210 (12%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM----YLDLEYQSGYCRLRT 68
            RL  II  L+  E +S  +L+ ++GVS RT+ RD           +  +  +G   +  
Sbjct: 4   ERLISIIYLLLNNEVVSASELSCKYGVSQRTIYRDIEAICAAGIPVVSYQGVNGGYGIMK 63

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLD------------RRLVNALLMCDESPCVIAPA 116
              E +M   +L     + +  L                  RL        ++P +    
Sbjct: 64  ---EYKMDKSLLSSDDIASIITLLKSTTTLFEDERVQETIHRLKTVQADNGKAPSLTMDL 120

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA--E 170
               S         L  AI GRR V        + R+   + P  LL+    WYL     
Sbjct: 121 GSWRS--YTAHLRTLHSAINGRRLVRFHYMNAKDERQDRLVEPVSLLLKYNAWYLYGYCR 178

Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
                 VF L  +  +  L E + R  ++ 
Sbjct: 179 SRDDYRVFKLTRMSELLALTECYERKHNIH 208


>UniRef50_B2A042 Helix-turn-helix type 11 domain protein n=1 Tax=Opitutus terrae
           PB90-1 RepID=B2A042_OPITP
          Length = 316

 Score = 66.5 bits (161), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 44/222 (19%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSG-------Y 63
           RL  ++  L     +   +LA  F V++RT+ RD     E    + +  ++G        
Sbjct: 6   RLVAMVMYLQGRRVVKAEELARHFEVNIRTIYRDVAALGE--AGVPVAGEAGVGYSLVRG 63

Query: 64  CRLRTAGSEMQMVPDVLIF-----------AHRSG--------LAGLFPGLDRRLVNALL 104
             L            + +F           A  +G        +  + P   +  +  L 
Sbjct: 64  YHLPPVM--FTAEEAIALFIGGEMVKQFADASLTGPMDSAVLKIRSVLPRERQDDLERL- 120

Query: 105 MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLL 159
                   I  +  + +     +   + QAI   R + +   GR         + P  + 
Sbjct: 121 ---TRATAIFGSPRLSTGIDQRTLLPIEQAIVSSRVLRMTYRGRARAEETRRDVEPLGVT 177

Query: 160 IHQQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
            H   WYLVA       +  F LD +  ++ L E F      
Sbjct: 178 YHDGVWYLVAWCRLRKDLRYFRLDRVRALEVLGERFAPRPDF 219


>UniRef50_B1CBH7 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1CBH7_9FIRM
          Length = 299

 Score = 66.5 bits (161), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 13/197 (6%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCRLRT 68
           RL  II+ L+  E ++   LA +F VSVRT+ RD  +     + +        G      
Sbjct: 5   RLMGIITTLLNKEKVTAPFLAGKFEVSVRTINRDILDLCKAGIPIVTTRGAGGGIYLDPD 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPC--VIAPANPVPSPSGA 125
              +  ++ +  I A  +GL G+    D      LL    ++P   +    +     S +
Sbjct: 65  FKMDKSLLKEDEINAIYAGLKGITSISDNNKYELLLDKFKDNPKNDLDIDLSSYYKKSLS 124

Query: 126 LSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTL 180
               ++ +AI  +  +       +G+    + P  L     +WYL A         +F L
Sbjct: 125 DKIEKMQKAINNKLLLEFDYFSKKGKSHRVVEPYTLTFKWSSWYLYAYSLEREDFRLFKL 184

Query: 181 DEIHLIQPLQETFRRND 197
           +    ++   ETF   +
Sbjct: 185 NRSINLKETGETFLSRE 201


>UniRef50_B0MJK4 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
           14662 RepID=B0MJK4_9FIRM
          Length = 301

 Score = 66.5 bits (161), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 17/203 (8%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGY------- 63
           + RL  II  L+  + ++  +LA  F VSVRT+ RD        + +    G        
Sbjct: 3   SSRLFEIIYILLEKKKVTAPELAERFEVSVRTIYRDIDALSSAGIPVYCTQGKGGGIGLL 62

Query: 64  --CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-RRLVNALLMCDESPCVIAPANPVP 120
               +  +    +    +L+      +            +++L   D+   V    +   
Sbjct: 63  EDFVMDKSALTEEEQSQILLSLQCMAVTNHMDAKKLLSRLSSLFQKDDENWVYVDFSRWN 122

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE--HEGH 174
                  F  L +AI  R  V       +         P +L      WYL A     G 
Sbjct: 123 PRGEKELFETLKEAILNREVVIFDYYNAKGEYSRREAEPMQLYFRGMDWYLTAFCKKSGE 182

Query: 175 IAVFTLDEIHLIQPLQETFRRND 197
           I +F L  +  +   +E F R D
Sbjct: 183 IRIFKLKRLKNLVKTEERFLRKD 205


>UniRef50_B1I4N6 Regulatory protein, DeoR n=1 Tax=Candidatus Desulforudis
           audaxviator MP104C RepID=B1I4N6_DESAP
          Length = 336

 Score = 66.1 bits (160), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 63/207 (30%), Gaps = 39/207 (18%)

Query: 29  SVRKLAAEFGVSVRTLRRDF---RERLMYLDLEY---QSGYCRLRTAGSEMQMVPDVLIF 82
           SV +L  EF  S RT+ RD    R++L    L+Y   + GY   R        + +  + 
Sbjct: 34  SVARLVEEFETSRRTIERDLEYLRDQL-NAPLKYDRTRGGYYYARDFQLPPFTLSEGEVL 92

Query: 83  AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQ--------- 133
           A   G   L           +    E  C+   A P           + I          
Sbjct: 93  ALFLGSKLLSQYRGTPFEKLITDAFEKICL---AMPETVSLDFSLVNQTISFAVERPRGD 149

Query: 134 -------------AITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVA--EHEG 173
                        A+  R  V L             R+ P  L  HQ  WYL+       
Sbjct: 150 EQHLLHLQELLGRALRERCTVDLDYYSASRDADTSRRVDPYHLRHHQGAWYLIGHCHFRN 209

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLC 200
            + +F LD I  ++     F  + +  
Sbjct: 210 EVRMFALDRITNLRVTDAHFTPDPAFD 236


>UniRef50_Q897M9 Conserved protein n=2 Tax=Clostridium RepID=Q897M9_CLOTE
          Length = 329

 Score = 66.1 bits (160), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 30/212 (14%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS----GYCRLR 67
           ++R+  I  RL  G  ++ ++LA EFGV  ++++RD  +   Y    Y+      YCR R
Sbjct: 15  SLRVLTIYERLSTGGIINKKELAYEFGVDEKSIQRDINDLRAYFQECYKEDVRIKYCRSR 74

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLF---PGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
                 +     L +   + +  +       +++ ++ LL      C+      + +   
Sbjct: 75  KGYILEKDKFSYLNYKEITAITKILLDSRAFNKKEMSLLLNKVILQCIPGERENIKNILN 134

Query: 125 ALSF---------------WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165
              +                 + + I  R+ + +      +     +L P  L+ ++  +
Sbjct: 135 KEVYNYVELQHGKKLIDILLDIEECIRKRKYINIKYKRVDKSLINRKLKPIGLIFNKFYF 194

Query: 166 YLVAE----HEGHIAVFTLDEIHLIQPLQETF 193
           YL+A      E  IA + +D I   +  +E F
Sbjct: 195 YLIAYIESKEEDFIATYRVDRIEEYKIFEEYF 226


>UniRef50_C6CXS9 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6CXS9_PAESJ
          Length = 327

 Score = 66.1 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 86/246 (34%), Gaps = 39/246 (15%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD---- 56
           M +   + +    R+ ++  RL  G  +  +  A EF VS + ++RD  E   +++    
Sbjct: 1   MKRENDQGELKFKRMLILYERLTRGHYIQKQAFADEFNVSKKAIQRDLEEMRFFVEEYFQ 60

Query: 57  -----LEYQSG-YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP 110
                ++Y  G    L+   S      +V++ +     +  FP  + +    +L    + 
Sbjct: 61  GEKVQIKYIKGKGYFLKRENSTRLTGEEVMLLSKVLLESRAFPKSEMK---EMLDKIIAQ 117

Query: 111 CVIAPANPVPSPSGALSFW---------------RLIQAITGRRRVTLIAEGR-----RC 150
           C  +    V       SF                 L  AI+ +R VTL            
Sbjct: 118 CEDSRQAQVYKAIRNESFLYQPVGHNKLLSKTIGDLNSAISEKRTVTLHYMRSGDVEPVT 177

Query: 151 ERLAPCRLLIHQQTWYLVAEHEGHIA----VFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206
             L P  +L  +  +YL+A   G       V+ LD I         FR ++      ++ 
Sbjct: 178 RLLEPLSILFSEYYFYLIANISGLEKEYPAVYRLDRIQSYSIENHHFRTDEK--TRFQEG 235

Query: 207 VFIQAL 212
            F + +
Sbjct: 236 EFRKQI 241


>UniRef50_D2QV53 Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale
           DSM 74 RepID=D2QV53_9SPHI
          Length = 324

 Score = 65.7 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 73/226 (32%), Gaps = 30/226 (13%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG 62
            +    RL+ RL  +++ L     ++  +LA  F VS RT+ RD R      + +    G
Sbjct: 2   NDSETTRLS-RLVALLTLLQTKRMVTATELANRFSVSTRTIYRDIRALESGGVPIVTHEG 60

Query: 63  -------YCRLRT------AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES 109
                    RL            +     +      +  A L  G     +   L   + 
Sbjct: 61  KGYSLLEGYRLPPILFTREEAIALLTAEKLASRLTDAATAQL-SGAAMDKLRTALRHSDR 119

Query: 110 PCV------IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRL 158
             +      I    P  +     ++ +L+ A+T  R V +  +           + P  L
Sbjct: 120 DYLETMAPRILVMEPASASERPNTYQQLVTAVTAHRVVRITYQAAETGESTDREIEPIGL 179

Query: 159 LIHQQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRL 202
               Q W++VA          F LD I  +  + E+F       + 
Sbjct: 180 -YLSQHWHVVAFCRLRQAFRNFRLDRISSLALVDESFPARTETLQQ 224


>UniRef50_B3PHR5 Predicted transcriptional regulator n=1 Tax=Cellvibrio japonicus
           Ueda107 RepID=B3PHR5_CELJU
          Length = 244

 Score = 65.7 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 44/236 (18%)

Query: 12  AVRLSLIISRL-VAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG------- 62
           A RL  + + L      L+ R+L+    VS RT+ RD +   L  + +E ++G       
Sbjct: 4   AERLFQLTTLLRNRRTVLTARQLSEHLQVSERTIYRDIQSLSLSGVPIEGEAGVGYRLSH 63

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSG--------------LAGLFPGLDRRLVNALLMCDE 108
             +L     + + V  +L+ A                  +  +   L       L   DE
Sbjct: 64  RYQLPPLMFDREEVEALLLGARMVSGWGDMDMARHANQAIQKILAVLPD----HLRHSDE 119

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQT 164
           +  ++ P               +  AI   +R+ +      E R    + P  L+   + 
Sbjct: 120 TLPLLVPNMEEVQRYYTAHSQTIRAAIRIHQRLRIDYIRADEERSSRVIEPLGLIFWGKV 179

Query: 165 WYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218
           W LVA  +       F LD I  +    ETF  ++            ++L HF  I
Sbjct: 180 WTLVAWCQLREDYRTFRLDRIQSLDMTGETFATHEQ-----------KSLKHFLHI 224


>UniRef50_C0A8I4 Helix-turn-helix, type 11 domain protein n=1 Tax=Opitutaceae
           bacterium TAV2 RepID=C0A8I4_9BACT
          Length = 363

 Score = 65.7 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 70/220 (31%), Gaps = 34/220 (15%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF---RERLMYLDLE-----YQSGYC 64
            R+  I + L  G+ ++  KLA    V+ +T+RRD    R+RL  L +          + 
Sbjct: 34  ERIQAIHAALAGGKAVNALKLANALEVNDKTIRRDLAFMRDRLE-LPVSEYDPVRGGFFY 92

Query: 65  RLRTAGSEMQMVPDVLIFAHRSG---------------LAGLFPGLDRRLVNALLMCDES 109
               A   +  + +  + A                   L   F  L   L + +      
Sbjct: 93  TEAVANLPLMQITEGELLALMVARQAVEAYRGTPYAHTLERAFAKLTAGLGDVVSFSASG 152

Query: 110 ---PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIH 161
              P  I+  N   +      F    +A+      T + +     G    R+ P  L   
Sbjct: 153 AGLPGAISFRNVGMAAVNTAVFTAASRAVLKCEESTFLYQKPDDYGPELRRVQPYHLACI 212

Query: 162 QQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199
              WYLV        +  F L  IH  +  +  F R+   
Sbjct: 213 GGMWYLVGHDLDRQAMRTFALPRIHDFKTTKHQFVRDPDF 252


>UniRef50_A9AWW0 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AWW0_HERA2
          Length = 319

 Score = 65.7 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 38/222 (17%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRR------DFRERLMYLDLEYQ---SGYC 64
           RL  I+  L + + +   +LA+   +S RT+RR      D       + +E +    G  
Sbjct: 7   RLLTILELLQSHQRMRGAELASRLEISQRTVRRYVVMLQDMG-----IPVEAERGPDGAY 61

Query: 65  RLRTA----------------GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-- 106
            L                      ++M+  +      + + G    L+R +   LL    
Sbjct: 62  YLGRGYTIPPLMINPTEALALVLGLRMIHALQFPVDATAIEGAIAKLERVMPTILLDQVR 121

Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQ 162
                +     P P+         L  A+  R++V L  +            P  ++ +Q
Sbjct: 122 AFQEAITFHVAPPPALLQPSIVASLSVAVHTRQQVWLSYQTYNGDASVRVFDPYGIVYYQ 181

Query: 163 QTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRL 202
             WY V        +  F +D I  ++ L ++F R      L
Sbjct: 182 GYWYSVGYCHQRNDLRTFRIDRIQELKLLNQSFERPQDFDAL 223


>UniRef50_B5D329 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM
           17135 RepID=B5D329_9BACE
          Length = 307

 Score = 65.7 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 69/208 (33%), Gaps = 38/208 (18%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFG-----------VSVRTLRRDFRERLMY--LDLEY- 59
           R  LI+ +L     +S R+L  E              S  TL+RD  E      LD+ Y 
Sbjct: 10  RWILIVRKLQNQPYISFRELQRELERELAFRGYDPVCSDATLKRDLNELKEEFGLDITYS 69

Query: 60  -QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP 118
                  L         +  ++                       L     P  I P   
Sbjct: 70  RTHKGYSLPAVRKGWLDMDCIIEPIEVM---------------TALGNHSLPEYILPEQY 114

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWY-LVAEHE 172
               +  LS+  L+ AI  R++V  +        R    L+P  L   +  WY L AE  
Sbjct: 115 QTRGTQYLSY--LLHAIRQRQKVHFLYRKYADNTRSERTLSPYALKEWRGRWYVLGAEES 172

Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           G I  F LD I  +  L E F +N++  
Sbjct: 173 GKIKTFGLDRIEQLTLLPEIFSKNEAFD 200


>UniRef50_C4KYJ3 Helix-turn-helix type 11 domain protein n=1 Tax=Exiguobacterium sp.
           AT1b RepID=C4KYJ3_EXISA
          Length = 296

 Score = 65.7 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 28/216 (12%)

Query: 17  LIISRLVAGETLSVRKLAAEFGVSVRTLRRDF--RERLMYLDLE---YQSGYCRLRTAGS 71
            +I  L  G   +  +LA E G S+RT++RD    E L Y          GY  L     
Sbjct: 7   QLIRLLNRGRRFTAEELAQETGASIRTIQRDMLSLEELGYPIWSVPGTGGGYEMLPNRLL 66

Query: 72  EMQMVPD------VLIFAHRSGL-----AGLFPGLDRRLVNALLMCDESPC------VIA 114
               + +       L       +       +   L    VN L    E+        ++ 
Sbjct: 67  PPLHLREQEAVALYLTLKWMEHIPDVPFGDIRSTLSDWYVNELPHDVETKIRRLERNILW 126

Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEH 171
             N     +       + QAI  + ++ +      G R   +AP  + +    WY+    
Sbjct: 127 LGNKQIPKAPFTKD--IYQAIERKNKIEMTYRSTNGSRTFPIAPVGMALLDLKWYVFGLS 184

Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207
           E     + +D I  +Q L+E+F  ++ L  L+++  
Sbjct: 185 ELGFRQYRIDRIEAVQVLEESFE-SEDLVTLLKESD 219


>UniRef50_Q0S564 Possible transcriptional regulator n=4 Tax=Rhodococcus
           RepID=Q0S564_RHOSR
          Length = 318

 Score = 65.3 bits (158), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 25/214 (11%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGY----CRL 66
           + RL  ++ RL      + ++LA E GVSVRT+ RD        + L  +SG       L
Sbjct: 3   SSRLVEVMLRLEGSRGATAQQLADELGVSVRTVYRDVTALSAAGVPLWTESGPGGGIRLL 62

Query: 67  RTAGSE----------MQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116
               S+            M+  V   A   GL  +      +L+ AL +   +   +   
Sbjct: 63  DGWQSKLGGMTGAETSALMLLGVPSIADDLGLRDVAAAAQSKLLGALPVPLRAGAQLWRD 122

Query: 117 NPVPS-------PSGALSFWRLIQAITGRRRVTLIAEGRR---CERLAPCRLLIHQQTWY 166
                       P        +  ++   RR+ +            L P  L+     WY
Sbjct: 123 RLYVDAPGWFDGPRDNGELPVVASSVLEGRRLGIRYRKGSRSAARTLDPLGLVAKAGVWY 182

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           LVA+H G    + +  I     L++   R D+  
Sbjct: 183 LVAQHRGRTLSYRVSRISDATVLKQASVRPDNFD 216


>UniRef50_B0MYF1 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
           17216 RepID=B0MYF1_9BACT
          Length = 307

 Score = 65.3 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 41/211 (19%)

Query: 14  RLSLIISRLVAGETLSVRKL------------AAEFGVSVRTLRRDFR--ERLMYLDLEY 59
           RL++I+S+L +   +   +L            +   G ++RTL+RDFR  E L  + + +
Sbjct: 9   RLAIIVSKLNSKHYVPAEELVDYVSYTIRARYSDTAGCTLRTLQRDFRTIEELFGVTIRH 68

Query: 60  QS--GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117
               GY      GS       +L F   + +           +   L+ +    +I P  
Sbjct: 69  DKLCGYYIDERYGSAEDYEALLLNFELLNAID------SDSTIQKYLLPEHHRAIILPNI 122

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCER-LAPCRLLIHQQTWYLVAEH 171
                        L+ AI  R  V          G+   + L P  L   QQ WYL+   
Sbjct: 123 AE-----------LLDAIRNRHPVEFDYILVRHGGKVVRKCLHPYFLKESQQRWYLIGYD 171

Query: 172 -EGHIAVFTLDEIHLIQPLQ-ETFRRNDSLC 200
            +  +  F LD +  ++ L  E F RND++ 
Sbjct: 172 TDDKLKAFGLDRLSSLRILSRERFMRNDTID 202


>UniRef50_C9RCX8 Transcriptional regulator-like protein n=1 Tax=Ammonifex degensii
           KC4 RepID=C9RCX8_AMMDK
          Length = 330

 Score = 65.3 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 29/205 (14%)

Query: 24  AGETLSVRKLAAEFGVSVRTLRRDFR---ERL---MYLDLEYQSGYCRLRTAGSE--MQM 75
           AG+  + R+LA EFGV  RT+  D +   +RL   +  D      Y              
Sbjct: 19  AGKYPNPRQLAQEFGVQERTIYLDRQFMVDRLGAPIAYDRRRGGWYYTDPNWALPTVFVT 78

Query: 76  VPDVLIFAHRSGLAGLF--PGLDRRLVNALLMCDES------------PCVIAPANPVPS 121
             ++L F     +A  +     ++ L++A+     S              V    +P   
Sbjct: 79  EGELLAFLLSVEVAKRYLGTPFEKPLLSAVEKIRRSLKGQVEVNLAELQAVSFLTSPSSV 138

Query: 122 PSGALSFWRLIQAITGRRRVTLIA----EGRR-CERLAPCRLLIHQQTWYLVAEHE--GH 174
                  + L +AI   R+V +       G      + P  L   +  WYLVA       
Sbjct: 139 AVNERLLFDLQRAIVENRKVKINYFTASRGSWQERVVEPYHLFNLRGDWYLVAFDHFRQD 198

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSL 199
           + VF    I   Q L E F R+   
Sbjct: 199 MRVFHTGRIDRWQVLSEVFVRDPHF 223


>UniRef50_O34920 Uncharacterized HTH-type transcriptional regulator yobV n=2
           Tax=Bacillus subtilis group RepID=YOBV_BACSU
          Length = 313

 Score = 65.3 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 27/225 (12%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67
            RL  ++  L++ + +   +LA  F VSVRT+ RD          +        G   + 
Sbjct: 4   ERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIGIME 63

Query: 68  TAGSEMQMVPDVLIFA---HRSGLAGLFPGLDRRL----VNALLMCDESPCVIAPANP-V 119
           T   E + + +  +FA       ++ ++  +        +  L+    +           
Sbjct: 64  TYRLEREWLKEEELFAIASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTEKWF 123

Query: 120 PSPSGALSF-------WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLV 168
              +             ++  AI     ++                P  L+     WYL 
Sbjct: 124 IDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSASGETLLRETEPYTLVCKAGHWYLY 183

Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRND-SLCRLVEDPVFIQ 210
           A          F L+ +  +  L +TF R D  L  L  D  + Q
Sbjct: 184 AYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQ 228


>UniRef50_A9KIF8 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KIF8_CLOPH
          Length = 307

 Score = 64.9 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 22/198 (11%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCRLRT 68
           RL  I   L+  +  S   LA  F VS RT+ RD     L  + +        GY  ++T
Sbjct: 5   RLLAITIYLLNHKRTSAGDLANRFEVSTRTIMRDIDSLCLAGIPVISTFGVDGGYEIMKT 64

Query: 69  AGSEMQMVPDV---LIFAHRSGLAGLFPGLDRRLVNAL-----LMCDESPCVIA-PANPV 119
              E Q+  ++    I A   GL+  +P  DR L N +     L  + +  ++       
Sbjct: 65  FQMEKQVAGEIDYSFILAALKGLSTAYP--DRELENTIEKLQSLGENSTQSIVIDLGVAN 122

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHI 175
                      L  AI     V           +   + P  ++     WYL+A    H 
Sbjct: 123 EHKGINSLLSMLSHAIKIEHIVEFTYTNTDNITKSAVVEPVSIIYKWYHWYLLAYQPSHE 182

Query: 176 A--VFTLDEIHLIQPLQE 191
              ++ L  +  +    +
Sbjct: 183 TYCLYKLIRMEHLTIHDQ 200


>UniRef50_D1AKN4 Helix-turn-helix type 11 domain protein n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1AKN4_SEBTE
          Length = 322

 Score = 64.9 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 69/229 (30%), Gaps = 25/229 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY----QSGYCRLRT 68
           R+  I+  L   + +S ++LA EF VS RT+ RD      M + +E     + G   +  
Sbjct: 5   RILNILYYLNRYKKVSAKRLAEEFEVSQRTIYRDLDILENMGIPIERKMGFEGGISIIEN 64

Query: 69  AGSEMQMVPDVLIFAHRSGL--AGLFPGLDRRLVNALLMCDES----------PCVIAPA 116
              E               +     +     +L+        S                 
Sbjct: 65  FKLENINFSK-SELTRIISILNNYYYKDSKTKLLIEKFKNIISDKEMEEQRKLDYFKIEE 123

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVA--E 170
             +       +   + +AI  +  + +            +L P  + I   + YL A   
Sbjct: 124 GYLMHKREKENISSIKKAIESKNIIEVKYINSDNVISERQLEPYIISIKGNSVYLFANCL 183

Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSL-CRLVEDPVFIQALPHFRFI 218
               + +F +  I  I+   E F  +  +  ++     F     H   I
Sbjct: 184 LRKELRIFRVSRILEIKITNEKFTEDPDISEKIYSQKGFFSDYIHNEII 232


>UniRef50_A8MEN8 Helix-turn-helix type 11 domain protein n=14 Tax=Bacteria
           RepID=A8MEN8_ALKOO
          Length = 299

 Score = 64.6 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 68/211 (32%), Gaps = 18/211 (8%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYCRLRTAGS 71
            RL  I+  ++    ++  +LA +F VSVRT+ RD        + +    G         
Sbjct: 4   HRLFRILYYILEKGKVTANELADKFEVSVRTIYRDMDSISSAGIPIYATQGKGGGIEIAD 63

Query: 72  EMQMVPDVLIFAHRSGLAGLFPGLDR--RLVNALLMCDESPCVIAPANPVPSP------- 122
           E  +   +L    +  +     GL+   +L  + L+   S                    
Sbjct: 64  EFVLSKSLLTENEKEQIMAALHGLENTSKLYESELITKLSALFKMRNTNWIEIDFTNWQN 123

Query: 123 --SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE--HEGH 174
                  F  +  AI  +  ++       E      + P RLL   Q WYL A       
Sbjct: 124 NKIYEKIFNDIKSAIISKNIISFSYFSSNEEETNRSVKPVRLLFKGQDWYLYAFCLLRED 183

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
              F L  I  ++ L   F  +     L ++
Sbjct: 184 FRYFKLSRIKQLEILSINFEDDFDNITLKKE 214


>UniRef50_D1ARJ4 Helix-turn-helix type 11 domain protein n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1ARJ4_SEBTE
          Length = 309

 Score = 64.6 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 34/215 (15%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEY----QSGYCRLR 67
            RL  II  L+  + +   +LA  F VS RT+ RD        + +        G   L 
Sbjct: 4   ERLLSIIVILLERKKVPAPRLAEIFEVSTRTIYRDIDTLNAAGIPVITYPGVNGGVGILE 63

Query: 68  TAGSEM--QMVPDVLIFA-----------------HRSGLAGLFPGLDRRLVNALLMCDE 108
               E       D+                         L G+ P    + +        
Sbjct: 64  EFKLEKNLFTSEDLSSLLTGLSSISSAFSSSEITNALIKLKGIIPEKRLKDI----EKKT 119

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQT 164
           +  +I       + + +     +  A+   + +T   E     +   ++ P R+++    
Sbjct: 120 NRIIIDLTPWKNTNNVSSDLKSIKSAMDKNKILTFKYEDRQRKKSTRKIEPYRIILKGND 179

Query: 165 WYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRND 197
           WY+            F L  I  ++  +++F   +
Sbjct: 180 WYVEGFCILRNDFRYFKLSRISDLKITKKSFAPRE 214


>UniRef50_A9AUR2 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AUR2_HERA2
          Length = 321

 Score = 64.6 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 28/215 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYC---RLRTA 69
           RL  ++  L + + +S  +LA    +  RT+RR  ++     + +E + G     RL+  
Sbjct: 7   RLLGVLELLQSRQQISGSELAQRLEIHPRTVRRYIQQLQDMGIPVEAERGIYGAYRLKPG 66

Query: 70  G----------------SEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES--PC 111
                              +  + ++     R+        ++R L   L+    +    
Sbjct: 67  QRVPPLLFTEQEILALSLGLLTIRELQFPVERATAETTLAKIERVLPAGLVQHARALQAA 126

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167
           +                 +L  A+   ++V L      +      + P  ++ ++  WYL
Sbjct: 127 ISIQLGIRSPRIEPAWLLQLSLAVQYCQQVQLEYLSAQQNMTERTIEPYGIVFNEGAWYL 186

Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           V   +    + VF LD I  ++ L   F R  S+ 
Sbjct: 187 VGYCDLRRAMRVFRLDRIQAMRLLDSNFERPASID 221


>UniRef50_C4DT59 Predicted transcriptional regulator, COG2378 n=1 Tax=Stackebrandtia
           nassauensis DSM 44728 RepID=C4DT59_9ACTO
          Length = 339

 Score = 64.6 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 67/205 (32%), Gaps = 28/205 (13%)

Query: 23  VAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEY----QSGYCRLRTAGSEMQMVP 77
             G  L+  +LAAE  VS RT+ RD    L+  + +      + GY  L    + +  + 
Sbjct: 15  NRG-RLTAAQLAAELEVSERTVYRDIGALLVSGVPIRAITGPEGGYQLLDGYRTRLTGLT 73

Query: 78  D----------VLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL- 126
                      +   A   GL G   G   +L+ AL                        
Sbjct: 74  AAEAESLFVAGIPYAAAGLGLVGTLSGAQLKLLAALPQQARDRATGFSERFYFDAPNWYA 133

Query: 127 --SFWRLIQAITG------RRRVTL---IAEGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175
                R + A+T       R R+      A       + P  +++    WY+VA  EG +
Sbjct: 134 EPDQTRFLGAVTDATWSQHRLRIRYRRWEAPQEVERVIEPFGVVLKAGRWYVVARVEGSL 193

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLC 200
             F +  I  +  + E F R     
Sbjct: 194 RTFRISRILELDTMDEEFTRPADFD 218


>UniRef50_UPI0001B58C22 helix-turn-helix type 11 domain-containing protein n=1
           Tax=Streptomyces sp. AA4 RepID=UPI0001B58C22
          Length = 322

 Score = 64.6 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 74/213 (34%), Gaps = 25/213 (11%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQSGYC------ 64
           A RL  ++  L      +V +LA E GV+ RTLRRD    R   + L  + G        
Sbjct: 3   AERLVALLFTLHRKRAGTVGELAGELGVTERTLRRDLAALREAGVPLWSEPGRHGGIRLV 62

Query: 65  -----RLRTAGSEM---QMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116
                RL    S      +  DV       GL         ++  ++    +        
Sbjct: 63  DGWRSRLDGLTSREAVALLALDVPDALAGLGLGTAVAAAHAKVSASMPAQLQEQARTVAG 122

Query: 117 NP-------VPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWY 166
                      SP  A +   + +A+  ++R+ +    R       L P  L++    WY
Sbjct: 123 RFHLDASAWFTSPDDAAALPAVAKAVWTQQRLDVRYRRRDKVTRRTLDPLGLVLKAGVWY 182

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
           LVA  +  +  + +  +  +    ETF R +  
Sbjct: 183 LVARVDADLRTYRVSRLEGVAETGETFARPEEF 215


>UniRef50_C8WKG8 Helix-turn-helix type 11 domain protein n=1 Tax=Eggerthella lenta
           DSM 2243 RepID=C8WKG8_EGGLE
          Length = 313

 Score = 64.2 bits (155), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 30/210 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSG-----Y 63
           RL  I+  L+   T +  +LA +  VS RT+RRD           Y+      G      
Sbjct: 5   RLFEIVYLLMDRGTATTGELARKLEVSERTVRRDIDALSAAGVPVYMTRGKGGGVHLMDG 64

Query: 64  CRLRTAGSEMQMVPDVLIF--------AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
             L  +    +   D++          A           L R      +   +       
Sbjct: 65  YVLDRSVLSEREQDDIMAALSALNRTGASDDASDETAVRLGRLFQRENVNWLDMDFSFWG 124

Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA-- 169
           A P    +   +F  +  A  GR  ++         R    + P +L+  + +WYL A  
Sbjct: 125 APP----NYRAAFDTIRDAAIGRHPLSFAYFDAEGNRTERTVEPAQLMFKESSWYLRAWC 180

Query: 170 EHEGHIAVFTLDEIHL--IQPLQETFRRND 197
                  +F L  I    +  L ETF   +
Sbjct: 181 RERDAWRMFKLFRIDWETLDVLPETFEARE 210


>UniRef50_C2KY98 Transcriptional regulator n=5 Tax=Clostridiales RepID=C2KY98_9FIRM
          Length = 317

 Score = 64.2 bits (155), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 52/228 (22%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-------------LEYQ 60
           R+  I S+L+ G  ++    AA +GV+ R+++RD  +   ++D              +  
Sbjct: 11  RILGIYSKLINGYVVNKADEAANYGVNERSIQRDIDDIRNFIDSDPLMQGMMNSVIYDRA 70

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLF-----------------PGLDRRLVNAL 103
               RL T         ++L        +  F                 P  +++LV+ L
Sbjct: 71  VSGYRLETLYRIRLTNSEILAVCKILLDSRAFTKKEMSEILRKLIECCVPKKNQKLVDDL 130

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRL 158
           +  +E   V     P        + W L QAI     + +       +     +L P  +
Sbjct: 131 IKNEEFHYV----EPRHKIDFLDNLWELGQAIKSCSYIEISYTRMKDKATVQRKLRPVGI 186

Query: 159 LIHQQTWYLVAEHEGH-------------IAVFTLDEIHLIQPLQETF 193
           +  +  +YL A  +                 ++ LD I  I+ L E F
Sbjct: 187 MFSEYYFYLTAFIDDKEVRKDFDVINDSFPTIYRLDRISSIKVLDEHF 234


>UniRef50_UPI00019790EA hypothetical protein HcinC1_09731 n=1 Tax=Helicobacter cinaedi CCUG
           18818 RepID=UPI00019790EA
          Length = 194

 Score = 64.2 bits (155), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 4   AERRHDRLAVRLSLIISRLVAGET---LSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           +   ++    R+S I + L   E    +  ++LA EF VS+RTLRRD       + +EY 
Sbjct: 2   SLHDYETKMARISKIFAALHNPENNGVICAKELAKEFSVSLRTLRRDVE----NMGVEYS 57

Query: 61  --------SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD--RRLVNALLMCDESP 110
                    G+   +           +  FA+  G A     L     L +     + + 
Sbjct: 58  YKKDKIYFHGHYITKENDELSMAFLLLKSFAYSMGGATKTQMLSLLESLESKSQENNRTD 117

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-------EGRRCERLAPCRLLIHQQ 163
                 N         S   L  AI     ++          +      + P ++L    
Sbjct: 118 IFFTRTNLGEITLETESILLLQNAIKEHIIISFKFLQELNNTKTHTQREIMPLKILNFNG 177

Query: 164 TWYLVAEHEGHIAVFT 179
            WYL+        V +
Sbjct: 178 QWYLLGLESSDEKVLS 193


>UniRef50_UPI0001789485 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001789485
          Length = 316

 Score = 64.2 bits (155), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 69/230 (30%), Gaps = 35/230 (15%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG---------- 62
           RL  I   L+    LS ++LA  F VS +T+ RD        + +    G          
Sbjct: 5   RLLAITVLLLNRGRLSAKELADRFEVSSKTIYRDMDTLCQAGIPIVAHQGITGGFEIMEH 64

Query: 63  ----YCRLRTAGSEMQ---------MVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES 109
                  L                  + D  +      +  L   +++ L +      + 
Sbjct: 65  YMIDKYWLSAEEMSTLVTAVKGLSSALEDPQMGMLLEKIKALLRRVEQGLGDEY---RKE 121

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165
           P V+             +   L QAI  +RRV +             + P  L +    W
Sbjct: 122 PVVMDFQPWGQRQGLKPAVGLLKQAIHDKRRVQMEYIDAEGSAERRTIEPASLFLKGNVW 181

Query: 166 YLVAE--HEGHIAVFTLDEIHLIQPLQETFRRN--DSLCRLVEDPVFIQA 211
           Y+ A         +F L  +  I+ L E +         RL  D  +  A
Sbjct: 182 YVQAFCLEREDFRLFRLSRMQDIKMLSEAYEPRPWPGKERLEWDSSWSNA 231


>UniRef50_C6CS13 Helix-turn-helix type 11 domain protein n=3 Tax=Bacillales
           RepID=C6CS13_PAESJ
          Length = 315

 Score = 64.2 bits (155), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 79/246 (32%), Gaps = 52/246 (21%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL--DLEYQSGY-------C 64
           R   I+  L   + +    LA+ +  SVRT+ RD  + L  +   +    G+        
Sbjct: 6   RQLAIMLELQRSKVIRAEDLASLYETSVRTIYRDI-QALSEMGVPIFGAPGHGYSLMEGY 64

Query: 65  RLRTAG---------------SEMQMVPDVLIFAH--RSGLAGLFPGLDRRLVNALLMCD 107
            L   G                E ++  D    A   +S +  + P   R     +    
Sbjct: 65  FLPPIGFSAEEAVALLMGADFIEQRLDGDYARVAKAAKSKIEAILPETVREESTRV---R 121

Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---------ERLAPCRL 158
           E+  ++    P           ++ +AI  RR+++   + +             +AP  L
Sbjct: 122 ETMRLLNAGEPRTGLREKDILGQVRRAILERRKISFSYKKKTPEADGNRNSTREVAPYGL 181

Query: 159 LIHQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETF---------RRNDSLCRLVEDPV 207
              Q  W L+        I  F L  +  +  L   F         R      R  ++ +
Sbjct: 182 AFAQGNWMLIGHCGLRQDIRHFRLSRMTELAVLDTPFAMPHGFNLNRYRPQDDR--KEHI 239

Query: 208 FIQALP 213
           +I+A P
Sbjct: 240 WIRANP 245


>UniRef50_A4C3H1 Predicted transcriptional regulator n=2 Tax=Gammaproteobacteria
           RepID=A4C3H1_9GAMM
          Length = 231

 Score = 64.2 bits (155), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 85/219 (38%), Gaps = 35/219 (15%)

Query: 10  RLAVRLSLIISRLVAGET--LSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-YCR 65
           R A RL  II+ L+ G    ++ +++A +  VS RT+ RD +   L  + +E ++G   R
Sbjct: 2   RKAERLFQIIT-LLRGRRTVITAKQIAQQLEVSERTVYRDIQALILSGMPIESEAGIGYR 60

Query: 66  ----------------LRTAGSEMQMV----PDVLIFAHRSGLAGLFPGLDRRLVNALLM 105
                           L       +MV     + L  +  S L  +   L  +L   ++ 
Sbjct: 61  LQPKFDVPALMFNPDELDALLLGARMVQGFGSEQLAKSAASALNKIHSVLPEQLHRQIVQ 120

Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIH 161
            DE   ++ P   +   +      RL  AI    ++ LI +  +       + P  L+  
Sbjct: 121 QDER--LLVPNWHLKEATQYSDLIRL--AIKQHLKLALIYQDEKLNLSERTVLPLGLIFW 176

Query: 162 QQTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFRRNDS 198
            + W LVA  E      +F LD I  +  L  TF  +  
Sbjct: 177 GRAWTLVAWCEKRSDYRLFRLDRITQLTTLTCTFSLHQH 215


>UniRef50_Q65L70 Hypothetical DNA-binding protein n=1 Tax=Bacillus licheniformis
           ATCC 14580 RepID=Q65L70_BACLD
          Length = 315

 Score = 63.8 bits (154), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 70/234 (29%), Gaps = 39/234 (16%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67
            RL  ++  +      +  +LA EFGVS RT+ RD  E       +Y +     GY  L 
Sbjct: 5   ERLIELMMTIHTKRKFTAGELAVEFGVSYRTVLRDLDELSALGVPIYSETGANGGYYLLN 64

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVI---APANPVPS--- 121
                       L F      A  F     +   +L    E+  V+       P  +   
Sbjct: 65  EPVLPP------LFFTQSEAAAMFFAYQSLQFFGSLPFDAETRMVLKKFYRHLPPETQER 118

Query: 122 ---------------PSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQ 163
                          P  A     L+ A   +  +T++ +G        + P  L     
Sbjct: 119 IDAMKDRIVFWNPHRPKAAEHLETLLDAAVTQSVLTVVYDGTDECTERSIQPIGLYSWNG 178

Query: 164 TWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRF 217
            WY  A +      F L     I   ++    +    R +  P  +  + H   
Sbjct: 179 FWYCPA-YCFKRQAFRLFRADRILRAEK---ADSGQARQLPYPSVLSWIKHSES 228


>UniRef50_A6LYP1 Helix-turn-helix, type 11 domain protein n=1 Tax=Clostridium
           beijerinckii NCIMB 8052 RepID=A6LYP1_CLOB8
          Length = 304

 Score = 63.8 bits (154), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 18/197 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  II  L+  ++++ R+L+  F VSVRT+ RD          +Y       G   +  
Sbjct: 5   RLFQIIYILLKRKSITARELSEHFEVSVRTIYRDIDALCQAGIPIYSSQGKGGGISLVDK 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRL--VNALLMCDESPCVIAPANPVPSP 122
              +  +  +V        L  L    +  ++  L  ++ L    +   +    +   S 
Sbjct: 65  FIFDKSLFSEVEQDKILLALQSLSAVGYDDINDVLSKLSNLFQKSDVNWIEVDFSNWGSE 124

Query: 123 SGALSFWRLI-QAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--HEGHI 175
                 + LI ++I  ++ +          +    + P +LL   + WYL          
Sbjct: 125 RKQKEIFNLIKESILKQKVINFSYFSADGMKSNRYVEPFKLLFKDKAWYLQGYCLERTAF 184

Query: 176 AVFTLDEIHLIQPLQET 192
             F +  ++ I    E+
Sbjct: 185 RTFKITRMNDINITDES 201


>UniRef50_C7PP77 Helix-turn-helix type 11 domain protein n=3 Tax=Sphingobacteriales
           RepID=C7PP77_CHIPD
          Length = 235

 Score = 63.8 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 78/224 (34%), Gaps = 32/224 (14%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY 59
           M  ++ +  RL  RL+ I+ RL+  + ++  +LAA+F VSVRT+ RD R      + +  
Sbjct: 1   MPPSDMK--RL-TRLTAILIRLLTKKIVTASELAAKFDVSVRTIYRDIRTLEQAGVPVVT 57

Query: 60  QSG-------YCRLRTAGSEM-------------QMVPDVLIFAHRSGLAGLFPGLDRRL 99
           + G         R+                        D    A  SG       L R  
Sbjct: 58  EEGVGYTLMDGYRIPPVMFTESEANALITAEEIVSGNKDASFVAAFSGATAKIKALLRET 117

Query: 100 VNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAP 155
           +   +   +   ++  A      S      +L  ++T  + V +             + P
Sbjct: 118 MKEKVNLLQDRTIVKQAAYKEHSS--SCLSQLQISMTNAQLVKIKYMDEHAVATDRIIEP 175

Query: 156 CRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRND 197
                    W ++A         VF LD I L++PLQE F    
Sbjct: 176 FAFYGTGDNWLIIAYCRLRKDFRVFRLDRIVLLEPLQEKFTPQK 219


>UniRef50_B9YCC8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9YCC8_9FIRM
          Length = 305

 Score = 63.8 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 64/207 (30%), Gaps = 28/207 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL-----DLEYQSGYCRLRT 68
           R   I+  L+  + ++ ++LA  F VSVRT+ RD    L +L      +  + G      
Sbjct: 5   RCFEIVYLLLERKKITAQELADRFEVSVRTIYRD----LDFLSQAGIPIYARRGKDGGIE 60

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS------- 121
                 +   V   A +  L  L  GL    V       +    +    P  S       
Sbjct: 61  LWDTFVLNKTVFSEAEKQELTALLEGLRSTGVQEETQVLQKVSALL-GQPRQSWIEADFS 119

Query: 122 -----PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVA--E 170
                      F  L  AI  RR +     G         + P RL+   Q WY      
Sbjct: 120 LWSKTADQPDLFSLLRHAICNRRCIQFDYYGLNREATHRIVEPLRLVFKAQAWYCYGWCT 179

Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRND 197
                  F +  +  +  L E+F    
Sbjct: 180 LREEERFFKIVRMREVVELDESFEPRP 206


>UniRef50_B5GB15 DeoR-family protein transcriptional regulator n=2
           Tax=Actinomycetales RepID=B5GB15_9ACTO
          Length = 327

 Score = 63.4 bits (153), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 76/247 (30%), Gaps = 44/247 (17%)

Query: 22  LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMV 76
           L  G   S  +LAA  GV+ RT+RRD  ERL  L      L+   G  RL        ++
Sbjct: 5   LQRGRNWSGPELAARLGVTARTVRRDV-ERLRALGYPVHALQGVGGGYRLGAGSELPPLL 63

Query: 77  PD-----------------------VLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVI 113
            D                              + +  + P   R  V+AL    E     
Sbjct: 64  LDDEEATATAASLLAGAGGGGPGAGEAALRALAKIDRVMPARLRHEVSALAGAVE---FF 120

Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWYLVAE 170
                   P+   +   L  A             R      R+ P RL+   + WYL+A 
Sbjct: 121 EGGPERVEPA---TLVTLAGACRDEVEARFRYPSRGEVTERRVEPYRLVASDRRWYLLAY 177

Query: 171 HEGH--IAVFTLDEIHLIQPLQETFRRND---SLCRLVEDPVFIQALPH-FRFIQHSLLT 224
                    F +D +  +      F            V+  V   A PH  RF+ H+   
Sbjct: 178 DLDRDDWRTFRVDRMTEVAARTWRFTPRPAPEDAAAYVQRGVVTGAYPHSVRFLVHAPAA 237

Query: 225 FVPADSP 231
            V A  P
Sbjct: 238 EVRAQVP 244


>UniRef50_A0NRK1 Predicted transcriptional regulator n=2 Tax=Labrenzia
           RepID=A0NRK1_9RHOB
          Length = 342

 Score = 63.4 bits (153), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 69/214 (32%), Gaps = 49/214 (22%)

Query: 30  VRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRTA--------------- 69
              LA  F VS+RT+ RD  +RL+ L +         G  RL +                
Sbjct: 22  ATVLAERFHVSLRTIYRDI-DRLIALGVPVDAERGAEGGYRLASGYLQPPVALTRNETAA 80

Query: 70  ---------GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA---LLMCDESPCVIAPAN 117
                     S    + D L  A +  +A L P     L+     ++  +  P  I  + 
Sbjct: 81  LLAAMALVRSSRTVPLADDLAAAEKKLVASL-PKTVHGLLKEADRIVGIEPIPPDIFHSG 139

Query: 118 PVPSPSGALSFWR-----LIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYL 167
               P+     W+      +  I   +RV         +  +   + P  ++  +  WYL
Sbjct: 140 TKAEPT---CDWQKALDGFMAGILDGKRVRFEHVNPARKTVKAHDVEPYGVMFDRDLWYL 196

Query: 168 VAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
                    + V+  D +  ++     FR + + 
Sbjct: 197 AGRCVDTDTLKVYRADRVRGLEISGLFFRPDKNF 230


>UniRef50_C6CXH2 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillales
           RepID=C6CXH2_PAESJ
          Length = 319

 Score = 63.4 bits (153), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 80/247 (32%), Gaps = 53/247 (21%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD------------------------ 47
           A RL  I+  L   E L+ R+LA    VS RT+ RD                        
Sbjct: 3   ADRLLSIMILLQNNEILTTRELAKRLEVSDRTILRDMDALSLSGIPVVADRGKTGGWRLM 62

Query: 48  --FRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM 105
             FR  L  L LE       L       QM+ D+ +      +        ++L+ +L  
Sbjct: 63  DHFRSYLSGLKLEDTKALFILP----AEQMLKDLGVEIKGLDIR-------QKLLASLPD 111

Query: 106 CDESPCVIAPANPVPSP-------SGALSFWRLIQAITGRRRVTLIAEG----RRCERLA 154
             +S  +                     +   + +A+    R+ +             ++
Sbjct: 112 SSKSEALHYMEKVYMDTGTWKPAEEKNNALLTIQKALWEDTRLNMAYRKADGTSSERTVS 171

Query: 155 PCRLLIHQQTWYLVAE-HEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFI 209
           P  L+    +WYLVA   +G++  F +  I   +  +E F R          +     F 
Sbjct: 172 PLGLVAKGSSWYLVAMNDDGNLRSFRVSRITKAEATEELFSRPAEFDLAEYWKQSKLDFA 231

Query: 210 QALPHFR 216
            +LP F 
Sbjct: 232 GSLPTFE 238


>UniRef50_UPI0001B564E6 helix-turn-helix type 11 domain-containing protein n=1
           Tax=Streptomyces sp. AA4 RepID=UPI0001B564E6
          Length = 314

 Score = 63.0 bits (152), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 87/238 (36%), Gaps = 39/238 (16%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER--LMY-LDL 57
           MT   RR + LA+        L A   +S   LAA  GV+ RT RRD  +   L Y +D 
Sbjct: 1   MTTTSRRLETLAL--------LQARPGISATDLAARLGVTERTTRRDIAQLRELGYRIDG 52

Query: 58  E-YQSGYCRLR------------------TAGSEMQMVPDVLIFAHRSGLAGL---FPGL 95
           E  + G  RL                   + G +  +  D L  A  + LA L    P  
Sbjct: 53  EPGRVGGYRLAHGTAMPPLLLDADEVAAVSLGLQTAVAVDGLETATVTALAKLTQVVPTR 112

Query: 96  DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAP 155
            +  + AL   +  P                   R  +A+  R R  L A   +   + P
Sbjct: 113 WQARLAALASVESLPGKPFRQAARDILVPLALACRAGEAVRIRHR-ALDAPSAKPLDVQP 171

Query: 156 CRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETF---RRNDSLCRLVEDPVF 208
            RL+  ++ WYLVA   G      F +D I  +QPL           ++  L+ D  +
Sbjct: 172 YRLVTVRRQWYLVACPRGAADWKTFAVDRIEAVQPLGSKLPAPEPPSTVADLITDARW 229


>UniRef50_Q73PY5 Transcriptional regulator, putative n=1 Tax=Treponema denticola
           RepID=Q73PY5_TREDE
          Length = 301

 Score = 63.0 bits (152), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 16/210 (7%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66
           + RL  I+  L++ +  + ++LA +FGVSVRT+ RD          +Y       G    
Sbjct: 3   SERLFEIVFILLSRKQTTAQELAKKFGVSVRTIYRDMDILSSAGIPVYTMQGTGGGIFID 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL-----LMCDESPCVIAPANPVPS 121
            +      ++           L  L P  +    + L     +    +  +    +   +
Sbjct: 63  ESYTINKSILTKGEQEKILLALQCLSPIDEIHTESILNRLSAIFQKNADWIRIDYSRWDN 122

Query: 122 PSGALSFWRLIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWY--LVAEHEGHI 175
            +    F  L  AI  RR V L        +    + P RLL   + WY       +   
Sbjct: 123 KNDHHLFKTLKDAILERRAVKLEYLSSYGEKTERTVYPLRLLYKSKAWYAECYCTEKNAC 182

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
            +F L  I  I    +TF R D L ++ +D
Sbjct: 183 RLFRLTRILSIIKTLKTFNRADLLGKIPDD 212


>UniRef50_A1ALA5 Helix-turn-helix, type 11 domain protein n=1 Tax=Pelobacter
           propionicus DSM 2379 RepID=A1ALA5_PELPD
          Length = 336

 Score = 62.6 bits (151), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 79/224 (35%), Gaps = 33/224 (14%)

Query: 3   QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF---RERLMYLDLEY 59
           +  R++ + A RL  II  L     +++  LAAE GV  RT++RD     E    L  E+
Sbjct: 5   KPARKYSQ-AGRLHSIIRLLETRRGMTLDDLAAECGVDRRTIQRDLAAVEEAGYTLTTEW 63

Query: 60  QSGYCRLRTAGSEMQMVPDVLIFAHRSGL------------AGLFPGLDRRL--VNALLM 105
           Q G            + P  L       L              L   LD     + +LL 
Sbjct: 64  QEGRKVFSFLTRSRAIPPISLTLNQLMSLYLLRSLGVHLAGTPLLAELDDLFRTIRSLLP 123

Query: 106 CDESP--------CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCER 152
              +          +     P    + A  F  L +A+  + R+ L+         +   
Sbjct: 124 DRYAAHLERIARVSLPRLHGPRDYAAAAPHFGGLQRALLQQYRMRLVYAKNGAGESQAYE 183

Query: 153 LAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFR 194
           L P  L+ H+   YL+        + +F L+ I  ++  ++ F 
Sbjct: 184 LDPYTLVFHKAGIYLLGYAHNRKGMRLFALERIRGLEVSRQRFE 227


>UniRef50_A9E8Y8 Helix-turn-helix, type 11 n=1 Tax=Oceanibulbus indolifex HEL-45
           RepID=A9E8Y8_9RHOB
          Length = 220

 Score = 62.6 bits (151), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 19/199 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDL--EYQSGYCRLRTAG 70
           RL  +I RL  G+      LA  FGVS RT+ RD  +     L +      GY       
Sbjct: 9   RLVALIDRLRNGQVHRAEDLARRFGVSTRTIYRDMDKLSASGLPVAGTRGEGYRITPAIT 68

Query: 71  SEMQMVPDVLIFAHRSGLAGLF----PGLDR-------RLVNALLMCDESPCVIAPANPV 119
                +    + A   GLA       P L         +    L     +          
Sbjct: 69  LPPLTLTPAELEALNLGLAVAAEVGDPALQDAAETLAAKFDAVLPTETIAEGAAWSQALR 128

Query: 120 P---SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEG--H 174
               +         L  A+  R+++ +       + + P ++    + W L A  EG   
Sbjct: 129 SQGKATRVFAHLPVLRAAVQARQKLRIGVADSGSQVVRPLKVENWGRFWVLTAWCEGTER 188

Query: 175 IAVFTLDEIHLIQPLQETF 193
           +A F LD I   + L E F
Sbjct: 189 LATFRLDLIESAEALPELF 207


>UniRef50_A4SCA5 Putative uncharacterized protein n=1 Tax=Chlorobium phaeovibrioides
           DSM 265 RepID=A4SCA5_PROVI
          Length = 364

 Score = 62.6 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 31/227 (13%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR-ERL-MYLDLE 58
           M Q     +    RL LI ++L +    + + L+A   ++ +T++RD    R  +   ++
Sbjct: 1   MPQKRSVFE----RLQLIDAKLRSKSYPNCQTLSASLDMTPKTVQRDLNYMRFELSAPIK 56

Query: 59  YQS---GYCRLRTAG---SEMQMVPDVLIF-AHRSGLAGL--------FPGLDRRLVNAL 103
           Y S   G+          +      D     A +S L             G   ++++ L
Sbjct: 57  YDSRRRGFYYESDWTFFPNGYFNEQDTRSLLAAKSTLERYRGEPYYKEICGALDKVLSNL 116

Query: 104 LMCDESPCVIAPANPVPSPSG---ALSFWRLIQAITGRRRVTLIA-----EGRRCERLAP 155
                   ++   +   +P G      F  L +AI GR +V                L P
Sbjct: 117 KGSHSGQHLLDVYSFARTPRGMPSRDCFENLERAIRGRLKVRFGYVSLRTGKASERLLDP 176

Query: 156 CRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200
            RL + +  WYL+A  E +     F L  I  ++  +E +R +    
Sbjct: 177 YRLHLAEDGWYLIAIGEPNKGPRSFLLQNIRNLEVTREAYRVDPEFN 223


>UniRef50_A5I226 DeoR-family transcriptional regulator n=13 Tax=Clostridium
           RepID=A5I226_CLOBH
          Length = 314

 Score = 62.6 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 36/211 (17%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRE-RLMYLDLEYQ----SGYCRLRT 68
           RL  I+  L+  E +S  +LA +F VSVRT+ RD     L  + +  Q     G+  +  
Sbjct: 5   RLLAIVVMLLNREKISASELAEKFEVSVRTIYRDIEAINLAGIPIVSQIGNNGGFYIID- 63

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCVIAPAN 117
                ++   +L       +      +++ L           V  ++  ++         
Sbjct: 64  ---NYKINHQLLTLEDMISIIEALKNMNKFLDNKNVEMAIEKVKNIVPKEKKEVFDLHFE 120

Query: 118 PVPSPSGALSF---------WRLIQ-AITGRRRVTLIAEGRR----CERLAPCRLLIHQQ 163
            +   +    F         +++I  A+  +  +       +       + P  L+    
Sbjct: 121 QMCIDTLPWGFKKCEEENLKYKIIYDAVDNKNCIAFDYRNSKGEYNWREIEPLTLVFKGF 180

Query: 164 TWYLVAEHEGH--IAVFTLDEIHLIQPLQET 192
           +WYL +  +      +F L  +  +    E 
Sbjct: 181 SWYLFSFCKLKNDYRLFKLSRMENLTVPHEK 211


>UniRef50_UPI0001788CE6 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001788CE6
          Length = 297

 Score = 62.6 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 35/207 (16%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY---LDL----------EYQ 60
           RL  I   L+  + ++   LAA + VSVRT+ RD    L+    + +          E  
Sbjct: 5   RLLGITMELLTKKRVTATALAARYEVSVRTIYRDVD--LINQAGIPIASYPGADGGFELM 62

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRS-GLAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119
           SG+        +   V D L   H   G+ G   G    ++N L      P ++      
Sbjct: 63  SGFYL----TRQHFSVDDFLAIYHLLKGIEGTVKGRYTAIMNKL--GTLQPALLNGGCHE 116

Query: 120 P---SPSGALSF----WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLV 168
                 S +        ++++AI     +TL        R   ++ P +L   Q  WYL 
Sbjct: 117 QIIVEMSTSEHERTWVRQMLKAIESSNLITLHYTSASGSRSERQVEPLQLYWEQGVWYLE 176

Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETF 193
           A    +    +F +  I  ++  + TF
Sbjct: 177 AYCLLQQSKRIFRVSRITGLEISENTF 203


>UniRef50_Q73PA8 Transcriptional regulator, putative n=2 Tax=Bacteria
           RepID=Q73PA8_TREDE
          Length = 306

 Score = 62.6 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 24/217 (11%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSGYC----R 65
            R+  II  L+  E +S + LA  F VSVRT++RD     E    + +    G       
Sbjct: 4   ERILEIIIYLLNHEKVSAKYLAEYFDVSVRTIQRDMVSIAE--AGIPVYTLGGRYGGYAV 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM--------CDESPCVIAPAN 117
           L     +   + +       S L  L        +N+L+                   + 
Sbjct: 62  LENYKIKNINIKNSEQQIIISALESLATSYTNDKLNSLIEKYNAIIEKEGGQKVFWDFSV 121

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCER----LAPCRLLIHQQTWYLVAE--H 171
              +     S   L +AI G+  +         +       P  +      WYL A    
Sbjct: 122 TKENKKVQDSNMLLEKAIGGKNYIVFDYRNSEGKSSHVCAEPLAIHYKWYAWYLFAYPKE 181

Query: 172 EGHIAVFTLDEIHLIQPL-QETFRRNDSLCRLVEDPV 207
                 F +  +  +    + +F ++  + + +++  
Sbjct: 182 TKEYRTFKVARMQNLVISKERSFIKHGDIQQKMKEAE 218


>UniRef50_C0C4Y8 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C4Y8_9CLOT
          Length = 309

 Score = 62.2 bits (150), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 65/221 (29%), Gaps = 18/221 (8%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGY 63
           + R D  + RL  I+  L+    ++   LA    VSVRT+ RD        + +  Q G 
Sbjct: 6   KERTDMKSSRLFQILYLLMERRDVTAGMLAERLEVSVRTIYRDLDALSAAGIPVYAQKGQ 65

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-------RRLVNALLMCDESPCVIAPA 116
                   E +M   +L    +  +      LD         L+  +        V    
Sbjct: 66  GGGIRLMEEFKMDRSLLSGEQQEQILTALQSLDSVGAIEGSSLLTQMSGLFGKKAVGWLE 125

Query: 117 NPVPS----PSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLV 168
               S          F    +AI   R ++              + P +L      WY+ 
Sbjct: 126 VDFGSWGAMKKEKEYFEICREAILHCRLLSFEYFNSSGGWCERTVEPLKLCFKGGNWYVS 185

Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207
                     +F L  I  +    ETF           +PV
Sbjct: 186 GYCRRRRGFRLFRLSRILKLCIEDETFTPKVYKEGERPEPV 226


>UniRef50_B8DYL9 Putative uncharacterized protein n=1 Tax=Dictyoglomus turgidum DSM
           6724 RepID=B8DYL9_DICTD
          Length = 339

 Score = 62.2 bits (150), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 40/240 (16%)

Query: 1   MTQAERRHDRLAVR--LSLI-----ISRLVAGETLS--VRKLAAEFG-VSVRTLRRDFRE 50
           M++    + +LA R  L  I     + +     +L    RK++ EFG  SVRT++RD + 
Sbjct: 1   MSKTVSSNRKLAFRKMLPRIYRIFSLIKENKYISLDEITRKISYEFGETSVRTIKRDIKT 60

Query: 51  -RLMY-LDLEY---QSGYCRLRTAGSEM-----------QMVPDVLIFAHRSGLAGLFPG 94
            R  + + + Y     GY     +                +  ++L     +     F  
Sbjct: 61  LRDDFKMPIAYSKANGGYYLFSKSEFPFPKLTEGEVLSLLITANMLHQFKGTDFEEDFER 120

Query: 95  LDRRLVNALLMCDESPC-------VIAPANPVPSPSGALSFWRLIQAITGRRRV-----T 142
           L  +L   L   +  P         I      P       F ++++AI  R+ +     +
Sbjct: 121 LKNKLELFLRDNNVIPSDSIESALSIPFTFIKPKVDIRDKFVKILKAIRERKSIIIEYHS 180

Query: 143 LIAEGRRCERLAPCRLLIHQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
             ++     ++ P  L   +  WY          I  F LD I  I+   E FR+     
Sbjct: 181 FSSDKITERKVDPYHLYNFEGVWYFCGYCHLRKEIRDFALDRIKNIRETYEEFRKPRDFN 240


>UniRef50_C7PEN6 Helix-turn-helix type 11 domain protein n=1 Tax=Chitinophaga
           pinensis DSM 2588 RepID=C7PEN6_CHIPD
          Length = 318

 Score = 62.2 bits (150), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 37/220 (16%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSGYCRLRTAG 70
           RLS I+ +L   + +   ++A  F +S+RT+ RD    +E  + +  E  +GY  +    
Sbjct: 6   RLSAILIQLQGKKIVKAAEIAERFNISLRTVYRDVRALQEAGVPVGAEAGTGYYLVEGYH 65

Query: 71  SEMQMVPDVLIFAHRSG----------------------LAGLFPGLDRRLVNALLMCDE 108
               M       A  +G                      +  +  G ++  + +L     
Sbjct: 66  LPPVMFSREEAAALLTGEKLMANLSDHSNRKEFSNAMQKIKAVLRGSEKDFLESLEDNI- 124

Query: 109 SPCVIAPANPV--PSPSGALSFWRLI---QAITGRRRVTLIAEGRRCERLAPCRLLIHQQ 163
              V++   PV    P+  LS  +     Q I       L  E      + P  ++    
Sbjct: 125 --AVVSRRPPVGEEFPNRFLSDIQHSLGKQLILQLDYFALHNETHTKRDVEPIGIIFMNG 182

Query: 164 TWYLVA---EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
            W+L+A      G+   F +D I  +    + + +   + 
Sbjct: 183 YWHLIAWCRLRHGY-RDFRMDRIKNVGVSADNYDKQRHIT 221


>UniRef50_D2BDS4 DeoR family transcriptional regulator n=2 Tax=Actinomycetales
           RepID=D2BDS4_STRRD
          Length = 332

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 78/253 (30%), Gaps = 46/253 (18%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRL- 66
            R+  ++  L   +  +  +LA   GV+ RT+RRD  ERL  L       +   G  +L 
Sbjct: 13  ERVLTLLGLLQQRQVWTGPELADRLGVTPRTVRRDV-ERLRTLGYPVHASQGVGGGYQLG 71

Query: 67  RTAGSEMQMVPDVLIFA----------------------HRSGLAGLFPGLDRRLVNALL 104
                   ++ D    A                        + L  + P   R  V AL 
Sbjct: 72  PGQDLPPLLLDDEEAIATVVSLLAGAGGAVTGAGDAALRALTKLDRVLPTRLRHEVRALS 131

Query: 105 MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIH 161
              ES           +P        L +                     R+ P RL+  
Sbjct: 132 GSVES------FGGGRTPVDPEVLMTLARVCRDEVEAGFGYPSGSEVRRRRVEPYRLVAS 185

Query: 162 QQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCR--LVEDPVFIQALPHFRF 217
           ++ WYL+A          F +D +  +      F    +      V++ V  +  PH   
Sbjct: 186 ERRWYLLAYDLDRDDWRSFRVDRMTDVSARTWRFSPRAAPDAAPYVQEGVASRVYPH--- 242

Query: 218 IQHSLLTFVPADS 230
            Q   L   PAD+
Sbjct: 243 -QARFLVHAPADT 254


>UniRef50_C0CXX2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0CXX2_9CLOT
          Length = 304

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 59/197 (29%), Gaps = 16/197 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCRLRTA 69
           RL  I   L+  +  S  +LA +F VSVRT++RD        +         G   +   
Sbjct: 5   RLYGITVYLLNHKKASASELARKFEVSVRTVQRDIDALCQAGIPVAAESGAKGGYSIPDT 64

Query: 70  ---GSEMQMVPDV-LIFAHRSGLAGLFPGLDRRLVNALLMCDESP--CVIAPANPVPSPS 123
               S+     D  LIF    G +   P  +             P    I     V    
Sbjct: 65  FRMDSQAITQEDYGLIFTALKGFSSAMPSPNIASALEKFTALSKPDNERIILDFSVLREG 124

Query: 124 GALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHI--AV 177
           G     +L  AI  +  V           R   + P  L+     WYL+A          
Sbjct: 125 GETLIKQLQTAIRRKCCVRFTYTNADNMTRVHTVEPVALVYRWYAWYLLAYSTVREDYRT 184

Query: 178 FTLDEIHLIQPLQETFR 194
           + L  +   +     F 
Sbjct: 185 YKLVRMEQAEITGLPFT 201


>UniRef50_B1C2N9 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM
           1552 RepID=B1C2N9_9FIRM
          Length = 306

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 17/199 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR-----ERLMYLDLEYQSGY----- 63
           RL  II  L+     +  +LA +  VSVRT+ RD          +Y+      G      
Sbjct: 14  RLFRIIYHLMENGKSTAPELAEKLEVSVRTVYRDIDIISSAGVPIYVTTGRNGGIQIADS 73

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS-P 122
             L       +   D++       +           ++A+        +    +   +  
Sbjct: 74  FVLDRLLLSDKEKEDIITALRSVSIVDDHNRDTLSKLSAIFNTKSENWLEVDFSRWGNKS 133

Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRRCERLA----PCRLLIHQQTWYLVAEHEGH--IA 176
                F ++ +AI   + + ++    R E +     P +++   ++WY+ A         
Sbjct: 134 QDNTMFQKIKEAIISHKMLCIVYANTRGEVIERVICPLKMVYKAKSWYIKAFCMNKSDFR 193

Query: 177 VFTLDEIHLIQPLQETFRR 195
           +F L  I   + +++ F  
Sbjct: 194 IFKLTRIIQARNMEKNFSP 212


>UniRef50_C8PRK5 HTH domain protein n=1 Tax=Treponema vincentii ATCC 35580
           RepID=C8PRK5_9SPIO
          Length = 332

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 26/209 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQ---SGYC 64
           +  RL+ I +R+ A       +LA E   SV T+ RD    R+R     +EY     G+ 
Sbjct: 13  MLERLTYIHNRIKAEYFPKTSELAKELECSVPTISRDIMFLRDRF-NAPIEYNAQKKGFY 71

Query: 65  RLRTAGSEMQMV--PDVLIF-AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS 121
                   +Q +   DV    A ++ L         + +   +     P        +  
Sbjct: 72  YSEKYEMPIQNISQKDVTALVAAKTLLQQYQGTPIYKELVDAIDVITFPQRQGTGAFIDR 131

Query: 122 PS---------GALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYL 167
            +             F  L QA+   R +          G+   R+ P +LL     ++L
Sbjct: 132 IAVPPMPYAIIDEAVFTALYQAMIQNRTIEFDYCGVLDSGKVHRRVRPYQLLFDDGRYFL 191

Query: 168 VAEHEGHI--AVFTLDEIHLIQPLQETFR 194
               E      +F +  I  +    E F 
Sbjct: 192 FGYAEERQAERLFYIPRIEHLCITDELFT 220


>UniRef50_A3I1Q3 Putative deoR-family transcriptional regulator n=1 Tax=Algoriphagus
           sp. PR1 RepID=A3I1Q3_9SPHI
          Length = 319

 Score = 61.5 bits (148), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 35/212 (16%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-------YCR 65
           RL+ I++ L +  T+   +LA  FGVS+RT+ RD R      + +  ++G         R
Sbjct: 6   RLTAILTHLQSKRTIRAIELANRFGVSLRTIYRDVRALEETGVPIIGEAGQGYSLVEGYR 65

Query: 66  LRTA---------------GSEMQMVPDVLIFAHRS--GLAGLFPGLDRRLVNALLMCDE 108
           L                    E  M  +   F   +   +  +    ++ L+  +    +
Sbjct: 66  LPPVMFTKQEALAFIVAEKLLEKSMDEESNRFFKEALYKVKAILKSEEKDLLGRVDDKIQ 125

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRV-----TLIAEGRRCERLAPCRLLIHQQ 163
              V    N       + +F  +++AI+ RR +     T   +      L P  +     
Sbjct: 126 ---VFKRENHQSQFKRSKNFQLVLEAISERRVLQGHYTTFEPKKTTERILEPIGIYYSYS 182

Query: 164 TWYLVAEHEGH--IAVFTLDEIHLIQPLQETF 193
            WYL+A          F +D    I  L  +F
Sbjct: 183 NWYLIAYCRLRKDYRTFRIDRFDKIHVLDGSF 214


>UniRef50_UPI0001BC5E8A helix-turn-helix, type 11 domain-containing protein n=1
           Tax=Fusobacterium ulcerans ATCC 49185
           RepID=UPI0001BC5E8A
          Length = 303

 Score = 61.5 bits (148), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 20/203 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  ++  L+  + ++ ++LA  F VSVRT+ RD          +Y       G    + 
Sbjct: 5   RLFEMLYILINRKHITAKELALHFEVSVRTIYRDIDILCSSGIPVYTSQGSGGGIFIEKN 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGL----DRRLVNALLMCDESPCVIAPANPVPSPSG 124
                 +  D       + L  + P L    + +L++ L    +   +            
Sbjct: 65  YVLNNSVFTDEEQEKIITSLQSI-PSLNATDNSKLISKLSGLFKKNYLNWIEIDFSRWGD 123

Query: 125 ALSFWR----LIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174
           +    +    +  +I G   ++             ++ P +L     +WYL         
Sbjct: 124 SDHDNQNYILIKNSIIGHTIISFAYISSYGEVTLRKICPVKLFFKSSSWYLQGFCLDKKD 183

Query: 175 IAVFTLDEIHLIQPLQETFRRND 197
              F +  +  ++   E F  N+
Sbjct: 184 YRTFKISRMSSLKASPEIFNINE 206


>UniRef50_C5BVH8 Helix-turn-helix type 11 domain protein n=1 Tax=Beutenbergia
           cavernae DSM 12333 RepID=C5BVH8_BEUC1
          Length = 325

 Score = 61.5 bits (148), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 72/218 (33%), Gaps = 33/218 (15%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRL 66
           A R+  +++ L      S  +LA    VS RT+R D  ERL  LD     +  ++G+ RL
Sbjct: 5   AARMLDLLALLQMRPGWSGSELAQRLSVSTRTIRADI-ERLRRLDYPVEGVRGRAGHYRL 63

Query: 67  RTAG-SEMQMVPDVLIFAHRSGLAG--------------------LFPGLDRRLVNALLM 105
                    ++ D    A   GL                      + P   RR V+AL  
Sbjct: 64  GVGAKLPPLLLDDDEAVAVAIGLRAATGLSGVEESTARALAKLEQVMPHQVRRKVHALAT 123

Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIH 161
                 V   +N       A     +  AI     +               + P RL+  
Sbjct: 124 ATSQGPVNTDSNVADPVVDAGVLSSIAAAIRDLEWLRFSYRDDAADAPPRAVEPYRLVSW 183

Query: 162 QQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETFRRND 197
           Q+ WYLVA        A F +D + L       F  + 
Sbjct: 184 QRRWYLVARDTTSTAWATFRVDWMDLRMRTGRHFVPSP 221


>UniRef50_D1B1L2 Transcriptional regulator protein-like protein n=1
           Tax=Sulfurospirillum deleyianum DSM 6946
           RepID=D1B1L2_SULD5
          Length = 304

 Score = 61.5 bits (148), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 16/203 (7%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL---DLEYQSGYCRLRT- 68
            R   I +++  GE L   ++A   G + +T+ RDF + +  L    +EY      +   
Sbjct: 8   ERYEYIFTKIRRGEELHPVEIAEYLGCNRKTITRDFEKIISVLFESPIEYNGNKWIVPKP 67

Query: 69  -AGSEMQMVPDVLIFAHRS----GLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS-- 121
                     +++  A                   L    L    S  V    N +    
Sbjct: 68  IIDIRAYTASNLVSIALLLKKAYHEDPYLYDKSIELF-DFLQEKVSHSV-YKQNSIEELF 125

Query: 122 PSGALSFWRLIQAITGRRRVTLI-AEGRRCERLAPCRLLIHQQTWYLVAEHEGHIA--VF 178
           PS    F+ +  AI   + +          + + P ++   +Q WYL        +  ++
Sbjct: 126 PSCKDEFYLIKNAIEKTQEIKFSFHYDDNVKHVQPLKITNLEQYWYLFCYDLEQSSFWIY 185

Query: 179 TLDEIHLIQPLQETFRRNDSLCR 201
               I  I+ L + F  ++ L R
Sbjct: 186 HFKGIKNIKVLDQIFNLDEHLYR 208


>UniRef50_C7Q8N4 Helix-turn-helix type 11 domain protein n=12 Tax=Bacteria
           RepID=C7Q8N4_CATAD
          Length = 328

 Score = 61.5 bits (148), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 30/219 (13%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLM--YLDLEYQSGYCRL 66
           A RL  ++  L     ++  +LA E  VSVRT+ RD     E  +  Y D     GY  L
Sbjct: 3   ASRLVSLLLLLQTRGRMTAHQLAEELEVSVRTIYRDVESLHEAGIPLYGDAGPAGGYQLL 62

Query: 67  RTAGSEMQMVPDVLIFAHRS----------GLAGLFPGLDRRLVNALLMCDESPC----- 111
               + +  +      A             GL  +      ++  AL             
Sbjct: 63  AGYRTRLTGLSANEAEAMFLAALPGPAAELGLGSVMAAAQLKVKAALPPELADRSGRIQE 122

Query: 112 -VIAPANPVPSPSGALSFWRLI-QAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQT 164
             +  A           F   + +A+  +RR+ ++             LAP  +++    
Sbjct: 123 RFLLDAPGWYDDGDTSPFLPAVAEAVWNQRRIRVLYRRWTEPTEVERTLAPYGIVLKTGK 182

Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQET---FRRNDSLC 200
           WY VAE  G    + +++I  +  L++    F R +   
Sbjct: 183 WYTVAESAGRTNTYRVNQILELTALEDDDSCFERPEDFD 221


>UniRef50_D2PRW1 Helix-turn-helix type 11 domain protein n=1 Tax=Kribbella flavida
           DSM 17836 RepID=D2PRW1_9ACTO
          Length = 312

 Score = 61.1 bits (147), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 91/247 (36%), Gaps = 44/247 (17%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER--LMY-LDL 57
           M+ A RR + LA        +L +   +S   LA   GV+ RT+RRD  +   L Y +D 
Sbjct: 1   MSTAGRRLETLA--------QLQSHPGISAPGLAERLGVTERTVRRDIAQLRELGYRIDG 52

Query: 58  E-YQSGYCRLRTAGSEMQMVPDVLIFAHRS-------GLAGL--------------FPGL 95
           E  ++G  RL    +   ++ D    A  +       G+ GL               P  
Sbjct: 53  EAGRTGGYRLAHGRAMPPLLLDADEVAAVALSLRTAVGVDGLETAAVTALAKLTQVVPSR 112

Query: 96  DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAP 155
            +  + AL      P   +               R  +A+  R R +  +   +   + P
Sbjct: 113 WQARLTALTEVQALPGQSSRRAGRDVLVPIALACRAGEAVRIRHR-SAGSGETKPIEVQP 171

Query: 156 CRLLIHQQTWYLVAEHEGHI--AVFTLDEIHLIQPLQETF---RRNDSLCRLVEDPVFIQ 210
            RL+  ++ WYLV    G     V+ +D I  +QPL   F          +LV      Q
Sbjct: 172 HRLVTLRRLWYLVGCPRGTEDWRVYAVDRIEQVQPLGTRFPAPEPPGDAAQLVA-----Q 226

Query: 211 ALPHFRF 217
            L H R+
Sbjct: 227 TLAHGRW 233


>UniRef50_C2G2T1 Helix-turn-helix, type 11 domain protein n=2 Tax=Sphingobacterium
           spiritivorum RepID=C2G2T1_9SPHI
          Length = 331

 Score = 61.1 bits (147), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 75/208 (36%), Gaps = 28/208 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSG-------YCR 65
           R   I+ +L +   +  ++LA  F VS+RT+ RD R      + +  ++G         R
Sbjct: 11  RTVAILIQLQSKRVVRAQELADRFNVSLRTIYRDIRTLEASGVPIFGEAGTGYSLMEGYR 70

Query: 66  LRT------AGSEMQMVPDVLIFAHRSGLAGLFP-------GLDRRLVNALLMCDESPCV 112
           L          +       ++      G+   F         + + +   LL   ES  +
Sbjct: 71  LPPIMFTREEATSFVAAEKLMQQYVDQGIQEHFSSAIIKIKAVLKSMEKDLLSSLESQVL 130

Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCER-----LAPCRLLIHQQTWYL 167
           I   +   +     +   L ++I+ +++V +  +    E      + P  +    + WY+
Sbjct: 131 IQSNSKNLNKLVPNALSVLFESISRKKKVRMHYQTIESEHPETRVIEPVGIFHENKFWYM 190

Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETF 193
           +A          F  D I  +  L++ F
Sbjct: 191 IAYCYLRKAYRQFRTDRIQRLDVLEDAF 218


>UniRef50_A4FQS7 DeoR-family transcriptional regulator n=3 Tax=Actinomycetales
           RepID=A4FQS7_SACEN
          Length = 326

 Score = 60.7 bits (146), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 68/196 (34%), Gaps = 31/196 (15%)

Query: 32  KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMVPDV------- 79
           +LA   GV+ RT+RRD  ERL  LD         +G  RL +      ++ D        
Sbjct: 31  ELADRLGVTDRTVRRDV-ERLRELDYPVRSTTGTAGGYRLVSGRDLPPLLLDDDEAVAVA 89

Query: 80  --LIFAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAI 135
             L  A   G+AG+     R L  +  +L     P + A      +        R+  A+
Sbjct: 90  IGLATADNRGVAGIEESSMRALAKLEQVLPARLRPRLAAVTGATAAAPHRHPTPRVDPAV 149

Query: 136 --------TGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLD 181
                     R  ++    GR       R+ P  L+  Q  WYL+A          F +D
Sbjct: 150 LAVLAACCRDREILSFDYRGRGGEPSARRVEPHHLVTVQGFWYLLAHDPDRADWRTFRVD 209

Query: 182 EIHLIQPLQETFRRND 197
            I    P +      +
Sbjct: 210 RIERPSPTRRHHEPRE 225


>UniRef50_Q15PY3 Helix-turn-helix, type 11 n=1 Tax=Pseudoalteromonas atlantica T6c
           RepID=Q15PY3_PSEA6
          Length = 238

 Score = 60.7 bits (146), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 29/228 (12%)

Query: 10  RLAVRLSLIISRLV-AGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQS--GYCR 65
           R A RL+ I+  L    + ++ + LA    VS RT+ RD ++ +   + +  ++  GY  
Sbjct: 2   RKAERLNDIVHHLRRMHQAVTAQTLAETLEVSHRTIYRDIQDLIDSGVPILGEAGVGYVI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGL-------AGLFPGLDRRLVNALLMCDESPCV------ 112
            +       M     + A   G+          F    +     +     +P +      
Sbjct: 62  DKKYHLPPIMFDADELEAIALGIGMVSNWTDEKFAEKAQSAYRKIQATLPAPLINELHQI 121

Query: 113 -IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167
               A         ++F  + + I  +  V+       + +    + P  L+     W L
Sbjct: 122 STFSAPSRYKIPWQVNFTEVRECIRRKHLVSFTYTDLSDQQSQRTIRPLALISFSPIWLL 181

Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRNDS-----LCRLVEDPVF 208
               E  G    F LD I     L   ++           ++V+D   
Sbjct: 182 AGWCELRGAYRNFRLDRISEFTKLNTRYQDEKDKSLATYLKMVKDEEN 229


>UniRef50_A0RAF1 Putative uncharacterized protein n=10 Tax=Bacillaceae
           RepID=A0RAF1_BACAH
          Length = 327

 Score = 60.7 bits (146), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 33/239 (13%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M       ++  +RL  +  RL  G  L  ++    FGV  +T++RD  E  +YL++   
Sbjct: 1   MVWDLNEREKKTIRLLSLYDRLCKGNVLLKKEEIDNFGVHPKTIKRDLEEIELYLEMNSG 60

Query: 61  S----------GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP 110
           +              L  +        ++L           F   +   +   +M   +P
Sbjct: 61  NSLQLEQDIKKQQVHLSRSSDLWLSKEEILSLGKVLLETRAFSKDEMNTLLDKIMNQSAP 120

Query: 111 --------CVIAPANPVPSPSGALSFWRLI----QAITGRRRVTLIAE-----GRRCERL 153
                    +              S  ++I    +A+  ++ + +  +          ++
Sbjct: 121 KDRDFIKDVMRNERYHYEPLQHQRSLQQMIWDISEAVRTKKVLEIEYKKETAAEGTKRQV 180

Query: 154 APCRLLIHQQTWYLVA----EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVF 208
            P  +L  +  +YL A           ++ +D I   +  +E F+ N       E+  F
Sbjct: 181 KPVGILFSEYYFYLAAFPIEYDFEFPTIYRMDRITNYEMQEERFKVN--YTERFEEGEF 237


>UniRef50_D2B9H3 DeoR family transcriptional regulator n=3 Tax=Actinomycetales
           RepID=D2B9H3_STRRD
          Length = 360

 Score = 60.7 bits (146), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 62/194 (31%), Gaps = 29/194 (14%)

Query: 32  KLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRTAGSEMQMVPDVLIF---- 82
           +LA   GVS RTLRRD  +RL  L           G  +L +      ++ D        
Sbjct: 25  ELADRLGVSERTLRRDV-DRLRELGYPVSAARGTDGGYQLASGAVLPPLLLDDEEAVALA 83

Query: 83  -----AHRSGLAGLFPGLDRRL---VNALLMCDESPCVIAPANPVP-----SPSGALSFW 129
                A +SG+AG+     R L   V  L     +      A  +          A    
Sbjct: 84  VGIGDAAQSGIAGMQEASLRALTKVVRVLPPRLRARVDALRAMTLSVAASGPVVAAGVLT 143

Query: 130 RLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEI 183
            + QA   + R+      R        + P R++     WYLVA          F LD +
Sbjct: 144 VVAQACRDQERLRFGYTARGAASTDREVEPYRVVALGGRWYLVAYDLTRHDWRSFRLDRL 203

Query: 184 HLIQPLQETFRRND 197
                    FR   
Sbjct: 204 IEPAATGTRFRPRP 217


>UniRef50_C3WQ96 Transcriptional regulator n=3 Tax=Fusobacterium RepID=C3WQ96_9FUSO
          Length = 311

 Score = 60.3 bits (145), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 81/219 (36%), Gaps = 25/219 (11%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCR 65
           + A RL+  +  L + ++ ++  L  EF +S RT  RD ++     L +     ++G  +
Sbjct: 2   KRAERLNQELIFLSSKKSFNLSDLINEFNISKRTALRDIQDLELMGLAFYVENGRNGGYK 61

Query: 66  LRTAGSEMQMVPDVL----IFAHRSGLAGL--------FPGLDRRLVNALLMCDESPCV- 112
           L      + M  D+     IF     L  L        +P L ++L+  L +  +   + 
Sbjct: 62  LINEKLLIPMHFDIREITSIFFALKSLEALSTTPFEKSYPLLYKKLLATLPIEQKEKILK 121

Query: 113 ---IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA--EGRRCERLAPCRLLIHQQTWYL 167
              +   + +P  +       +++AI   + + ++     +  +++ P  L      W+ 
Sbjct: 122 LLKVVEYHNIPPINPTNYLTVILEAILDLKVLNILYTQHNKISKQILPYNLFYRNGVWFC 181

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQ-ETFRRNDSLCRLV 203
            A         V+  D I        E F   + L   +
Sbjct: 182 YALDINNNIFGVYRCDYIKECTINDIEHFYTFEDLKNFL 220


>UniRef50_A0R9T5 Transcriptional regulator, DeoR family n=74 Tax=Bacillaceae
           RepID=A0R9T5_BACAH
          Length = 322

 Score = 60.3 bits (145), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 41/214 (19%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRR---DFRERLMYLDL---EYQSGYCR 65
           A RL  I+    A +T + +++A EF +SVRT+ R   D  +  M L +   + ++G   
Sbjct: 13  AKRLLDILIFASAKKTFTAQEIADEFNISVRTVHRYIVDLSD--MGLPIYAEQGRNGGY- 69

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP---------A 116
                   +++P +L F     ++  F          L    E   VI            
Sbjct: 70  ---KVLTNRVIPPIL-FTEEEAVSIFFAFQSLSYYRDLPFNTEINSVIHKLYSSLQHDAK 125

Query: 117 NPVPSPSGALSFWR-------------LIQAITGRRRVTLIAEGR---RCERLAPCRLLI 160
             V      ++FW              L  AI  +  +    E +   + + + P  +  
Sbjct: 126 TKVEKIRSYIAFWNPKRTIDTPHLNEVLTAAIENKN-LHFQYESKSGIKTKHVHPIGVYA 184

Query: 161 HQQTWYLVAEHEGHIAV--FTLDEIHLIQPLQET 192
           H   WYL +       V  + +D I  I   +E 
Sbjct: 185 HDGLWYLPSYDFSRKKVLLYRVDRILSILSTEEN 218


>UniRef50_D1C4L3 Helix-turn-helix type 11 domain protein n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C4L3_SPHTD
          Length = 354

 Score = 59.9 bits (144), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 81/217 (37%), Gaps = 30/217 (13%)

Query: 12  AVRLSLIISRLVAG-ETLSVRKLAAEFGVSVRTLRRDFR--ERLMYLDLEYQ--SGYC-- 64
           A R+  IIS++ A     + R LA  + +S R + +D +     + L+LE Q   GY   
Sbjct: 20  ASRILEIISKISAAPNQWTRRSLAEHYEISERQITKDLQVIRHGLRLELERQPSGGYYFK 79

Query: 65  ---RLRTAGSEMQMVPDVLIFAH----RSGL--AGLFPGLDRRLVNALLMCDESPCVIAP 115
              RL      +     + + A      +G+    L   + R  + +++  +  P +   
Sbjct: 80  TLPRLPAVSYSLAEALAIFLAAQAGRRLAGIPHEELSAAIAR--LRSIMPRELQPLLQDD 137

Query: 116 ANPVPSPSGALS----FWRLIQAITGRRRVTLIAE------GRRCERLAPCRLLIHQQTW 165
              VP              L +AI  R+ V L+         R   R+ P  ++ + Q+W
Sbjct: 138 GAAVPPVPRNRHRERILEVLTRAIAARKSVDLVYHPASRPGERTQRRVDPYAVVPNAQSW 197

Query: 166 YLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200
           +L+        + +F +D +  +      F  +    
Sbjct: 198 HLIGWCHLRCAVRIFKVDRVEDVTVTDIRFTPDPEFD 234


>UniRef50_C6PB22 Putative uncharacterized protein n=1 Tax=Thermoanaerobacterium
           thermosaccharolyticum DSM 571 RepID=C6PB22_CLOTS
          Length = 334

 Score = 59.6 bits (143), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 45/223 (20%)

Query: 18  IISRLVAGETLSV--RKLAAEFG--VSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEM 73
           I+S    G T+S   ++LA  FG  VS +T++RD  +  M   + Y+ G  R  T   E 
Sbjct: 19  ILSWENKGMTISQIYQRLAKNFGEEVSTKTIKRDLDDLTMIFPI-YEEGEGRGTTYTLEK 77

Query: 74  QMVPDVLIFAHRSGLAGLFPGLDRR----------------------------LVNALLM 105
             + D         +  LF     R                            + N  + 
Sbjct: 78  YKIHDF-----IFSIQELFALFFTREIIRKYDTSEIGKMALNFLERIISYIPSIYNDYID 132

Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRV-----TLIAEGRRCERLAPCRLLI 160
                 +I             +   +  AI  R+ +     +  ++      + P  +  
Sbjct: 133 RLYRTFLIQKDIDSDKNVTVETLKTINDAIIYRKSIKMRYYSFTSDTETEREVDPYLIYE 192

Query: 161 HQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201
            +  +YL         I  F +  I  I+ L ++F  + +  +
Sbjct: 193 KEGHYYLTGFCKLHNEIRDFRISRIKKIKLLDKSFEISPNFDK 235


>UniRef50_C4RGC2 Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC
           39149 RepID=C4RGC2_9ACTO
          Length = 323

 Score = 59.6 bits (143), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRR---DFRERLMYLDLEY-QSGYCRLRTA 69
           R+  ++  L +   L   +LA   G  VRT+RR     RE  + ++ E  + G  RL   
Sbjct: 7   RVLTLLELLQSHTRLPGSELADRLGTDVRTVRRYAAHLRELGIPVEAERGRHGGYRLARG 66

Query: 70  GS--EMQMVPDV-------LIFAHRSGLAGLFPGLDRRL----------VNALLMCDESP 110
                + +  D        L+ A R G++   P     L          +   L      
Sbjct: 67  YRMPPLVLTNDEALAVVVGLLAAERLGMSMTTPANSGALAKIERVLPHSLREPLAAMRET 126

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166
                               L QA   R  V +      + +    L P  ++ H+  WY
Sbjct: 127 LSFTTNAVTAQAPETSVLLALAQASRARTTVGISYLSWHQDQTERDLDPYGVVFHRGRWY 186

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214
            V        +  F +D I  +    +TF   D    +      +  +P+
Sbjct: 187 AVGRDHRHDSLRTFRIDRIASVTTRTQTFTAPDDFDPVTHLTSALAQVPY 236


>UniRef50_C8XGJ6 Helix-turn-helix type 11 domain protein n=1 Tax=Nakamurella
           multipartita DSM 44233 RepID=C8XGJ6_NAKMY
          Length = 333

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 70/209 (33%), Gaps = 34/209 (16%)

Query: 29  SVRKLAAEFGVSVRTLRRDFRERLMYL--DLEYQSGYCRLRTAGSEMQMVPDVL----IF 82
           +  +LA  F V  RT+RR   +RL  L   +E + G        +  +M P +L      
Sbjct: 21  TATELAERFDVDERTIRRTV-DRLRDLGIPIEARPGRYGGYRIAAGWRMPPLMLDENETV 79

Query: 83  AHRSGL-----AGLFPGLDRRLVNALLMCDESPCV---------------IAPANPVPSP 122
           A  +GL     +G  P        A  +      +               +  +      
Sbjct: 80  AVLAGLLAVPGSGTVPTGHTATATATAIAKIRRSLPARLAARADALLAAAVVGSPDAAPA 139

Query: 123 SGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEH--EGHIA 176
           +          A+  RR +TL             L P  L+ H+  WYLV          
Sbjct: 140 TDPEILLTAADAVRMRRPLTLDYRSGEDVLTRRTLQPHDLVAHRGRWYLVGLDSSSRQRR 199

Query: 177 VFTLDEIHLIQPLQETFRRNDSLCRLVED 205
            F LD +  ++PL  TF    +  R +ED
Sbjct: 200 TFRLDRVRALRPLSGTF-PAPAEHRPLED 227


>UniRef50_C0ZIU8 Putative uncharacterized protein n=2 Tax=Bacillales
           RepID=C0ZIU8_BREBN
          Length = 321

 Score = 59.2 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 75/216 (34%), Gaps = 35/216 (16%)

Query: 18  IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM----YLDLEYQSGYCRLRTAGSEM 73
           I+  L  G+ ++ ++LA    +++RT+ R            +     +G   L    +E 
Sbjct: 10  ILWLLKTGKRMTAKQLAEILEINIRTVYRYIDSLCASGVPIISDAGHNGGYSLLQQFNEA 69

Query: 74  QMVPDV---------LIFAHRSGLAGLFP---GLDRRL--VNALLMCDESPCVIAPANPV 119
            +  D+           FA  +G    +P    L R +  +      ++   +   +   
Sbjct: 70  PLFFDLNEQKALIHAAAFAQEAG----YPFGADLHRAISKLKRYTNEEQRDAIDRHSIGF 125

Query: 120 P------SPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLV 168
                   PS   +   L  ++     +++  +      R+   + P  L+  +  WY+V
Sbjct: 126 EVIQPPVDPSLESTLQELELSVANGYTLSIEYQKAYQTTRQMRHIDPYGLVYWKGNWYIV 185

Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRL 202
           A       I  F  D +H IQ  + +F+R       
Sbjct: 186 AYCHLRSTIRSFRADRVHEIQRTEGSFQRPPEFSAR 221


>UniRef50_A1SPT5 Helix-turn-helix, type 11 domain protein n=2 Tax=Actinomycetales
           RepID=A1SPT5_NOCSJ
          Length = 327

 Score = 59.2 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 67/200 (33%), Gaps = 40/200 (20%)

Query: 32  KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAG-SEMQMVPDVLIFA-- 83
           +LA    VS RTLRRD  +RL  L      +   +G  +LR  G     ++ D    A  
Sbjct: 31  ELAGRLEVSPRTLRRDI-DRLRELGYDVDAVRGVAGGYQLRAGGQLPPLLLEDDEAVAIA 89

Query: 84  --------------------HRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123
                                 + + GL P   RR ++A+    ++  V     P     
Sbjct: 90  VALRTAAAGAVAGLEETAIQALTKVIGLMPPRLRRRMDAV--HSQTDGVPWGGGP---AL 144

Query: 124 GALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHI--AV 177
            A     L QA      V+     R       R+ P RL+   + WYLVA          
Sbjct: 145 DAGVLTTLAQACRDDEPVSFSYVSRDSSPSERRVEPHRLVSLGRRWYLVAYDRDRQDWRS 204

Query: 178 FTLDEIHLIQPLQETFRRND 197
           F +D +   +   + F    
Sbjct: 205 FRVDRVTAPRASGQRFLPRP 224


>UniRef50_D0GJW0 HTH domain superfamily n=1 Tax=Leptotrichia goodfellowii F0264
           RepID=D0GJW0_9FUSO
          Length = 337

 Score = 59.2 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 31/223 (13%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+   +     ++R+  I+ RL  GE +++ K++ E+ V  +T++RD      Y   E  
Sbjct: 1   MSDKRKDSTEKSIRILKILKRLSKGEIINIEKVSNEYNVHRKTVQRDIESLRAYFLEENS 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFA--HRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP 118
           S     +T      +  D   F       ++ +   L+ R  N   +      +I  A  
Sbjct: 61  SEIKYSKTKKGYYLINNDQNNFTNEETLAISKII--LESRAFNKTELEKLLKKLIKQATN 118

Query: 119 -----VPSPSGALSF---------------WRLIQAITGRRRVTLIAEGR----RCERLA 154
                +        F               W L Q I  +  + +    +    +     
Sbjct: 119 EDRKIIEDIIKNEEFNYSPLQHGKNLLSIIWDLSQYIVNKELINIKYTTKDGVQKNYEAK 178

Query: 155 PCRLLIHQQTWYLVAEHEGH---IAVFTLDEIHLIQPLQETFR 194
              ++  +  +YL+    G     A+  +D I  I+   + F 
Sbjct: 179 SLSIMFSEYYFYLITYVNGKEEYPAILRIDRISEIKRKNQKFL 221


>UniRef50_B1HUW4 YobV n=2 Tax=Bacillaceae RepID=B1HUW4_LYSSC
          Length = 308

 Score = 58.8 bits (141), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 24/208 (11%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL--MYLDLEYQSGYCRLRTAG 70
            RL  +I  L+  + ++ ++LA  F VSVRT+ RD  E L    + +  Q G     +  
Sbjct: 4   ERLLTMIMILINRKKVTAQELAELFNVSVRTIYRDI-ETLSCAGIPVISQQGVHGGISLI 62

Query: 71  SEMQMVPDVLIFAHRSGL-----AGLFPGLDRRLVNALLM---------CDESPCVIAPA 116
              ++   VL     + L     + L    D   +  L                 +    
Sbjct: 63  DGYRVDKQVLTKEELASLTIAIKSALTTYEDSHALAVLEKLTSIADDHVTQTIDHLFVDL 122

Query: 117 NPV-PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH 171
           +P  P+         L  AI  R  V+              + P  ++   +TWYL    
Sbjct: 123 SPWGPNILFKEHITSLKSAIENRHCVSFTYTTAHGELTKRVVEPHTIVQKGKTWYLYGYC 182

Query: 172 EGHI--AVFTLDEIHLIQPLQETFRRND 197
              +   +F L  I  +      F R +
Sbjct: 183 TLRMDFRLFKLARIKNLMQEDLHFERKE 210


>UniRef50_A6W4U4 Helix-turn-helix type 11 domain protein n=3 Tax=Actinomycetales
           RepID=A6W4U4_KINRD
          Length = 339

 Score = 58.8 bits (141), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 58/200 (29%), Gaps = 37/200 (18%)

Query: 32  KLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRTAG-SEMQMVPDVLIFAHR 85
           +LA   GVS RTLRRD  +RL  L          +G  RL          + D    A  
Sbjct: 25  ELADRLGVSPRTLRRDV-DRLRALGYPVHAARGVAGGYRLAPGASLPPLALDDEEAVALV 83

Query: 86  SGLAG----------------------LFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123
            GL                        L P L RR+         SP             
Sbjct: 84  LGLQSVVDAAPASAEAALRALTKAVRVLPPRLQRRVDALRAATATSPA--GSGPGRLPGP 141

Query: 124 GALSFWRLIQAIT--GRRRVTLIAEGRR--CERLAPCRLLIHQQTWYLVAEHEGHI--AV 177
                  L  A+    R  +       R     + P RL+   + WYL+A         V
Sbjct: 142 DPAVLLTLAAAVQAGERTTLDYTTADGRTGPRSVEPHRLVPLWRFWYLLAHDLDRADWRV 201

Query: 178 FTLDEIHLIQPLQETFRRND 197
           F +D I         FR  +
Sbjct: 202 FRVDRIASATAGGARFRPRE 221


>UniRef50_D1CGQ4 Helix-turn-helix type 11 domain protein n=1 Tax=Thermobaculum
           terrenum ATCC BAA-798 RepID=D1CGQ4_THET1
          Length = 317

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 75/234 (32%), Gaps = 30/234 (12%)

Query: 22  LVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL--DLEYQSGYCRLRTAGSEMQMVPDV 79
           L A   ++  +LA    V VRT RR + E L  L   +E + G           ++ P +
Sbjct: 15  LQAHGRMTGAELARRLEVDVRTARR-YIEMLQDLGIPIEGERGRYGAYRLRPGYKLPPMM 73

Query: 80  LIF-------------------AHRSGLAGLFPGLDRRLVNALLMCDES--PCVIAPANP 118
                                 A    +      L R +  +L    ++    +I    P
Sbjct: 74  FTEDEALALTLGLLLSRRSALGAATPAIESALAKLSRVMPASLQEQVQAVEESLILDVAP 133

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVAEHEGH 174
             SP  +     +  A+  ++RV +               P  L+     WY        
Sbjct: 134 AESPPDSSVILTMSLAVHKQQRVRMTYRAWNGEETEREFDPYGLVYRDGRWYTTGYCHLR 193

Query: 175 --IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226
               +F LD +  I  L  TF R +    L E    I  +P   +++  L T +
Sbjct: 194 RAQRLFRLDRVLCIAMLDATFERPEGFDPLQEVVRTIANIPDDWYVEVVLETSM 247


>UniRef50_A9AVG2 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AVG2_HERA2
          Length = 320

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 61/217 (28%), Gaps = 40/217 (18%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSG------- 62
           RL  I+  L A +      LAA F +SVRT+ RD    L      + +    G       
Sbjct: 6   RLLAIVLELQAHQRRRAADLAATFEISVRTVYRDI---LALCEAGVPIISVPGQGYSLVE 62

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES---PCVIAPA--- 116
              L            +LI      L  L+                +   P +       
Sbjct: 63  GYFLPPLQL--TPAEALLIVQGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTM 120

Query: 117 -------NPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---------ERLAPCRLLI 160
                      +         L +AI  +R + +   GR             + P +L  
Sbjct: 121 QQGMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRTTPFAAARHTTRMVDPYQLTC 180

Query: 161 HQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRR 195
            +  WYL         +  F ++ I  +  L  TF  
Sbjct: 181 VRTVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEP 217


>UniRef50_Q1VU46 Putative transcriptional regulator n=1 Tax=Psychroflexus torquis
           ATCC 700755 RepID=Q1VU46_9FLAO
          Length = 299

 Score = 58.8 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 72/216 (33%), Gaps = 31/216 (14%)

Query: 26  ETLSVR-KLAA-EFGVSVRTLRRDFRERLMY--LDLEYQSGYCRLRTAGSEMQMVPDVLI 81
           E L++  +L   +F +S RT +RD ++      + +EY      L+T   + +   D+  
Sbjct: 29  EKLALESELQDYDFNISKRTFQRDVKDINSIYSIAIEYD---FSLKTYFIDFEDQQDIK- 84

Query: 82  FAHRSGLAGLFPGL--DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRR 139
                    +F  L    RL N +      P             G    + L+ AI    
Sbjct: 85  -GRVLEAFDIFNALNISDRLSNHIHFEQRKP------------QGTDHLFGLLHAIKNNL 131

Query: 140 RVTLIAEGRR-----CERLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQET 192
           ++                L P  L   +  WY+V      G I  F LD +  +    + 
Sbjct: 132 QLKFTYYKFWKDDLTERSLDPYALKEFKNRWYVVGNDPKNGVIKSFALDRLSDLVITNKK 191

Query: 193 F-RRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVP 227
           F + N           F    P+    +  +L+F P
Sbjct: 192 FHKPNAFQVNQYYKNSFGIISPNEDTPEDIVLSFTP 227


>UniRef50_B0MGX9 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=B0MGX9_9FIRM
          Length = 308

 Score = 58.4 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 25/235 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  I+  L+     +  +LA++F VSVRT+ RD          +Y       G      
Sbjct: 8   RLFKILYYLLEKGQATAPELASKFEVSVRTIYRDIDVMSSAGIPVYAAAGRDGGIKLYDD 67

Query: 69  AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRL--VNALLMCDESPCVIAPANPVPSP 122
                 ++ +  I     GL  L    +   +  L  + AL     +  +    +   + 
Sbjct: 68  FIISKALLSESDIQDIFIGLQSLSAAQYSDHEGTLEKLGALFKKTNTDWIEIDFSRWGAC 127

Query: 123 SGALS--FWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE--HEGH 174
                  F  L  ++  R+ +       R      R  P +LL   ++WYL         
Sbjct: 128 VQKEHEIFSLLKISVLKRQEIVFCYYNSRGEVSERRCRPIKLLYKDRSWYLFGFCCKRND 187

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPAD 229
             +F +  +  ++  +  F        +  D + I  LP    + + +    P D
Sbjct: 188 YRLFRVSRMRSLKLTEVMF------DEIPHDNLNILPLPEDMEVLNEIELRFPLD 236


>UniRef50_B2PXP4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PXP4_PROST
          Length = 64

 Score = 58.4 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 169 AEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226
           AE+   + VF L++I  ++PL  TF    ++ +L +   FI ALPHFR I   L+  +
Sbjct: 2   AEYHQKVHVFLLEDIQSVKPLSSTFIPQKNINQLSQQNSFIAALPHFRLISQLLMPLI 59


>UniRef50_C2SK93 Putative uncharacterized protein n=1 Tax=Bacillus cereus BDRD-ST196
           RepID=C2SK93_BACCE
          Length = 328

 Score = 58.4 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 28/213 (13%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGY--------- 63
            R+  +  RL   +++  +  A  F VS +T++RD      Y++    +GY         
Sbjct: 9   YRILSMYDRLRNEKSIYKQIEAVNFHVSEKTIQRDIDHLRGYIETNMVNGYVEYDRKTNA 68

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM---CDESPCVIAPANPVP 120
             L +          +         +  FP  +   +   L      ES  +I       
Sbjct: 69  YNLSSENKNSLTNEKIFAILKVLLESRAFPKNEMYQIIDSLTGLAQTESQGIIKKMTANE 128

Query: 121 SPSG---------ALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWY 166
                        +   W+L QAI  ++ +    +           + P  ++  +  +Y
Sbjct: 129 KILYGELQHQKDVSGLLWQLAQAIQFKKVIHFQYQREFDQFPDERIVKPVGVIFSEYYFY 188

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
           LVA        F    I+ I  + E + +    
Sbjct: 189 LVAYQ--TKYDFDFPTIYRIDRMNELYIKEQHF 219


>UniRef50_C4LIK8 Putative uncharacterized protein n=1 Tax=Corynebacterium
           kroppenstedtii DSM 44385 RepID=C4LIK8_CORK4
          Length = 694

 Score = 58.0 bits (139), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 55/186 (29%), Gaps = 13/186 (6%)

Query: 40  SVRTLRRDFRE-RLMYLDLEYQSGYCRLR-TAGSEMQMVPD---VLIFAHRSGLAGLFPG 94
             R L RD  + R +  D++       +  T   ++    D   V+  A +  L+G    
Sbjct: 58  CRRKLNRDIAQLRDLGFDIDATDDGYLMDFTQTVDVHFTQDEMGVIALASQFALSGDLAA 117

Query: 95  LDRRLVNALLMCDESPCVI-APANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GR 148
           L RR    L        V      P  +      F  L++AIT    V  +         
Sbjct: 118 LGRRAWVKLSAAGSLGTVAPIHGVPDSTDLTGPDFSTLLRAITESTVVNFLYYPSIEDEP 177

Query: 149 RCERLAPCRLLIHQQTWYLVAEHEG--HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206
               + P  L+     WYL            F L  I+ IQ         D    +    
Sbjct: 178 SLRTVEPWALVPESGRWYLACFDRDREKPRSFRLARINSIQETDTPATHTDQRAAIAPSE 237

Query: 207 VFIQAL 212
           +    L
Sbjct: 238 LVRSQL 243


>UniRef50_Q30U25 Putative uncharacterized protein n=1 Tax=Sulfurimonas
          denitrificans DSM 1251 RepID=Q30U25_SULDN
          Length = 87

 Score = 58.0 bits (139), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 4  AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGY 63
          A++ +D+   RL  I+S L   E  ++  LA EF VS RT++ D  +RL   D+  +  +
Sbjct: 2  AQKSYDKALFRLISILSMLTKDERPTISSLAEEFNVSKRTIQTDIYQRLRGWDI-TKDKF 60

Query: 64 CRL 66
           RL
Sbjct: 61 GRL 63


>UniRef50_C6D6Y8 Helix-turn-helix type 11 domain protein n=7 Tax=Firmicutes
           RepID=C6D6Y8_PAESJ
          Length = 314

 Score = 58.0 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 69/205 (33%), Gaps = 38/205 (18%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66
           + RL  ++  +       V++LA EFGVS RT+ RD +E       +Y ++    GY  L
Sbjct: 4   SKRLMELMMTVNRKRRFKVQELADEFGVSKRTILRDLQELSELGVPLYSEVGPHGGYQVL 63

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN--------- 117
           R            + F     +A  F     R  ++L    ES   +             
Sbjct: 64  RERVLPP------IAFTEEEAVAMFFAVHALRHYSSLPFETESVSALNKFYLHMPGDVRD 117

Query: 118 PVPSPSGALSFW------------RLIQAITGRRRVTLIAEGR----RCERLAPCRLLIH 161
            + S    + F              L+ A   ++ + +  E +     C ++ P  +  H
Sbjct: 118 RIDSMKHRVDFITPTRRGDAPCLAVLLDAAVHQKVLDIEYETKGSEAGCRKIQPVCIYAH 177

Query: 162 QQTWYLVA--EHEGHIAVFTLDEIH 184
              WY  A         VF  D I 
Sbjct: 178 NGLWYCTAFCFLREGFRVFRCDRIR 202


>UniRef50_D2R1Q3 Helix-turn-helix type 11 domain protein n=1 Tax=Pirellula staleyi
           DSM 6068 RepID=D2R1Q3_9PLAN
          Length = 332

 Score = 57.6 bits (138), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 31/216 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRR---DFRER---LMYLDLEYQ----SGY 63
           R+  +I  L   +  +   LA    VS RT+ R   D RE    L+Y D E +     G 
Sbjct: 12  RIVKLIGLLQGSQGYNAPALARACEVSTRTIFRYLEDLREAEVPLVY-DEERKTYRIPGQ 70

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFP----------GLDRRLVNALLM--CDESPC 111
             L            +L+  H  G     P           L+  L   LL    + S  
Sbjct: 71  FFLPPTNFTADEAIAMLVLCHELGDQHKIPLFAAARSAAAKLETSLPRRLLEYLRNLSGA 130

Query: 112 VIAPANPVPSPSGALSFW-RLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTW 165
           +    +      G    +  L++AI  R  V +       +     +L P +LL +Q +W
Sbjct: 131 LSIKLDATNPLEGQQGTYAELVEAIGQRHAVRIAYRSLHEKEHIETKLEPYQLLFNQHSW 190

Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSL 199
           Y++        +  F +  I  +  L   +    S 
Sbjct: 191 YVIGRSSLHREVRTFNVGRIDSLAMLDTPYEVPKSF 226


>UniRef50_D1A246 Helix-turn-helix type 11 domain protein n=3 Tax=Actinobacteria
           (class) RepID=D1A246_THECD
          Length = 317

 Score = 57.6 bits (138), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 69/201 (34%), Gaps = 41/201 (20%)

Query: 32  KLAAEFGVSVRTLRRDFRERLMYL----DLEYQ-SGYCRLRTAG-SEMQMVPDVLIFAHR 85
           +LAA+ GVS RTLRRD  +RL  L    D E    G  +LR+       ++ D    A  
Sbjct: 18  ELAAKLGVSERTLRRDI-DRLRELGYPVDAERGVGGGYQLRSGTAMPPLLLDDEEAVAIA 76

Query: 86  SGLAG-----------------------LFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
            GL                         + P   RR V AL    E P        V   
Sbjct: 77  VGLRSAAAGAVGAGVGETSVRALAKVIQVMPPRLRRRVQALQDYTE-PGTGGAGPAV--- 132

Query: 123 SGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHI--A 176
             A +   L Q      R+      R        + P RL+   + WYLVA     +   
Sbjct: 133 -DAEALTVLAQCCRDGERLRFAYRARDGRQSARTVEPHRLVALDRRWYLVAWDLERLDWR 191

Query: 177 VFTLDEIHLIQPLQETFRRND 197
           VF +D +    P  E FR   
Sbjct: 192 VFRVDRLGDPLPAGERFRPRP 212


>UniRef50_B1YFZ6 Helix-turn-helix type 11 domain protein n=1 Tax=Exiguobacterium
           sibiricum 255-15 RepID=B1YFZ6_EXIS2
          Length = 295

 Score = 57.6 bits (138), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 71/208 (34%), Gaps = 29/208 (13%)

Query: 22  LVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRTAGSEMQMV 76
           L   + L+ R+LA   GVS+RT++RD  E       +Y +     GY  L         +
Sbjct: 12  LNRQQLLTARELAEACGVSLRTIQRDLLELEANGYPIYSERGPAGGYRVLPNRLLPPLAL 71

Query: 77  PD---VLIFAHRSGLAGLFPGLDRRLVNALLMC--------------DESPCVIAPANPV 119
            +   + +F     +  + P L    +   L                D     +  A P 
Sbjct: 72  REQEAITLFLMIDWVGQI-PDLPFGALRGNLAEWYLHELPGDLEVKLDRLKGRVRFARPD 130

Query: 120 PSPSG-ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
              S    +  RL++A            GRR   + P  L   +  WYL+A+ E  +  +
Sbjct: 131 TPASPLTRNLLRLMEAEVKGEITYETTSGRRTILIDPIGLTFDRNRWYLLAQTERGLRQY 190

Query: 179 TLDEIHLIQPLQE-----TFRRNDSLCR 201
            +D I  +          TF   + L  
Sbjct: 191 RVDRIEQVTETTIPSKRMTFEEAEHLNE 218


>UniRef50_Q82JJ5 Putative DeoR-family transcriptional regulator n=2 Tax=Streptomyces
           RepID=Q82JJ5_STRAW
          Length = 318

 Score = 57.6 bits (138), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 64/205 (31%), Gaps = 29/205 (14%)

Query: 24  AGETLSVRKLAAEFGVSVRTLRRDFR-----------ERLMYLDLEYQSGYCRLRTAGSE 72
               +   +LA    VSVRT+ RD             ER  +  +E  +G+ R    G  
Sbjct: 15  TRGRVPAHELATRLEVSVRTIYRDIEALSASGVPVYAERGRHGGIELLAGF-RTDVTGLT 73

Query: 73  MQMVPDVLIFAHR-----SGLAGLFPGLDRRLVNALL-------MCDESPCVIAPANPVP 120
                 + I A +      GL        R+++ AL               ++       
Sbjct: 74  ADESRALFILAAQGAHAALGLDAALGSALRKVMTALPAPHRPAAEATSRRVLVDATRWKG 133

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVAEHEGHI 175
            P   +    L  A+   RR+ L              + P  L+     WYLVA+     
Sbjct: 134 GPQPVVDLETLQDAVFADRRLRLRYRHGGDAQPHTYTVDPYGLVSKAGVWYLVADRRAKP 193

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLC 200
            +F  D +     L +  RR   + 
Sbjct: 194 QLFRADRVRSATLLADPVRRRPGVE 218


>UniRef50_Q2S472 Putative DeoR-family transcriptional regulator n=1 Tax=Salinibacter
           ruber DSM 13855 RepID=Q2S472_SALRD
          Length = 319

 Score = 57.6 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 70/228 (30%), Gaps = 36/228 (15%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG-YCRLRTA 69
           + R   I+ +L          LA   GVS RT+ RD +  +   + L+   G   RL   
Sbjct: 4   SERWPAILLQLEPDAWTRATDLARALGVSERTVYRDVQAMVEAGVPLQGVPGKGYRLPDD 63

Query: 70  GS--EMQMVPD---------VLIFAHRSG------------LAGLFPGLDRRLVNALLMC 106
                +++  D              + SG            +  + P  DR  V +L   
Sbjct: 64  YLLAPIRLTRDEAVMLVLGSAYAARNFSGRYQAAARAARHKIEDVLPPDDRERVLSLRGS 123

Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIH 161
                 + P+N     +      +   A+   R +          G    R+ P  L+  
Sbjct: 124 VS----LIPSNVFGDSTEDGLLRQARHALVEERTLLATLAGASDNGPSTRRIDPYGLVRQ 179

Query: 162 QQTWYLVAEHEGHIAV--FTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207
              W+LV        V    L+ I  +     TF R  S     + P 
Sbjct: 180 GSAWHLVGYGHDREHVVHLRLERIRGLDMTDATFERPASYGARSQGPA 227


>UniRef50_C3JIV6 DeoR-family transcriptional regulator n=2 Tax=Rhodococcus
           erythropolis RepID=C3JIV6_RHOER
          Length = 321

 Score = 57.6 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 62/195 (31%), Gaps = 30/195 (15%)

Query: 32  KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMVPD-------- 78
           +LAA   V+ RT+RRD  +RL  L         + G  RL T      ++ D        
Sbjct: 26  ELAARLDVTQRTVRRDI-DRLRDLGYPVDSTSGKYGGYRLATGAHVPPLILDDDESVAVA 84

Query: 79  -VLIFAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAPANPVPSPSGALSFW------ 129
             L +A  + + G+     R L  +  LL       V A  + V S   A          
Sbjct: 85  VGLRYAAEAAIGGIEETSLRALTKIETLLPHRLRRRVSALHSSVSSIRRADDDIVDPEAL 144

Query: 130 -RLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDE 182
             L  A      V               + P RL+   + WYLVA          F LD 
Sbjct: 145 SVLAAACRDHEHVRFDYRRGDGESSRRLVEPHRLVTAGRRWYLVAWDHHRSDWRTFRLDR 204

Query: 183 IHLIQPLQETFRRND 197
           +         F   +
Sbjct: 205 LSEPWLAGSHFTPRE 219


>UniRef50_UPI000185D3A7 conserved hypothetical protein n=1 Tax=Capnocytophaga sputigena
           ATCC 33612 RepID=UPI000185D3A7
          Length = 309

 Score = 57.2 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 48/176 (27%), Gaps = 32/176 (18%)

Query: 37  FGVSVRTLRRD----FRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLF 92
           +    RT  RD      ER + L+    S    +  +    +    +             
Sbjct: 50  YNYKERTFERDKCDLLTERDIQLNYTRSSNIYTINWSELSEEQNFQIEN----------- 98

Query: 93  PGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-- 150
                  +   L  +                G    + LI AI   + +       R   
Sbjct: 99  -----DWLQEALRQNPYQKHFIHFEKR-PTRGLNWLYGLIYAIDNHQLLQFTYHKFREDT 152

Query: 151 ---ERLAPCRLLIHQQTWYLVAEHE------GHIAVFTLDEIHLIQPLQETFRRND 197
                + P  L      WYL+A           I+VF LD I  +  L+ETF    
Sbjct: 153 YLSHTVQPYALKEFDYHWYLLACDTAPNNDLPSISVFALDRITDLDILKETFTPTP 208


>UniRef50_C5BNS8 HTH domain protein n=2 Tax=Gammaproteobacteria RepID=C5BNS8_TERTT
          Length = 245

 Score = 57.2 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 26/210 (12%)

Query: 10  RLAVRLSLIISRL-VAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-YCRL 66
           R A RL  I++ L      L+ R++A +  VS RT+ RD +   L  + +E ++G   RL
Sbjct: 2   RKAERLFQILNLLRNRRTVLTARQIAEQLAVSERTVYRDIQALSLSGVPIEGEAGVGYRL 61

Query: 67  -RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV------ 119
            R       M     + A   G A +      R + A      +  +      +      
Sbjct: 62  QRQFDLPPLMFDRDEVEALLLG-ARMIRAWSDRQLAAAASSALNKILAVLPPQLRELEET 120

Query: 120 ---------PSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWY 166
                       S ++   ++  AI  ++++ +  E          + P  L     TW 
Sbjct: 121 SAIKVPDYQQQLSVSVHSEQIRAAIRSQQKIAIDYEDAQAQLSHRCVLPLGLFFWGATWT 180

Query: 167 LVAEHEGHI--AVFTLDEIHLIQPLQETFR 194
           LV   E  +    F LD I   + L E F 
Sbjct: 181 LVGWCELRLAYRAFRLDRIRHFELLAENFA 210


>UniRef50_C3QKP9 Transcriptional regulator n=2 Tax=Bacteroides RepID=C3QKP9_9BACE
          Length = 303

 Score = 57.2 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 32/177 (18%)

Query: 39  VSVRTLRRDFRERLMYLDL-----EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFP 93
           V +RTL+RDF++      +     + Q+GY        + +    +L             
Sbjct: 46  VDIRTLQRDFKDIEDLFGIRICFDKKQNGYYINEEDDLKKEQYERLL------------- 92

Query: 94  GLDRRLVNAL--LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA------ 145
            L+  L+NAL  +    +  +     P    + +     LI+AI     V          
Sbjct: 93  -LNFDLLNALDKISNLHTYVLAEHHRP----NDSECLPALIKAIKFFHPVEFSYIYVREG 147

Query: 146 EGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPL-QETFRRNDSLCR 201
           +  R +++ P  L   QQ WYL+A     +  F +D I  +Q L +ETF+RN ++  
Sbjct: 148 DKVRKKKVLPYYLKEDQQRWYLLAYDNNILKTFNIDCIRNLQILYEETFKRNMNIDA 204


>UniRef50_C4Z6L6 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=C4Z6L6_EUBE2
          Length = 329

 Score = 57.2 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 78/235 (33%), Gaps = 45/235 (19%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-- 61
           A   +D+++  LSL   RL+ G+ +     AA +GVS R+++RD      + + E +   
Sbjct: 15  ANDYNDKVSRVLSL-YQRLMEGKVVDKEAEAARYGVSARSIQRDISAINNFFEQETEKSG 73

Query: 62  -----------GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP 110
                      G   L           ++L        +  F       +  +L+   +P
Sbjct: 74  VINSIEYDKKRGGHYLSQIYRTRLTNSEILAICKILLDSRAFTRERMEHILDILVDRCTP 133

Query: 111 CV-------IAPA--NPVPSPSGALSF----WRLIQAITGRRRVTLIAEGRRC-----ER 152
                    +           +    F    W + QAI   R + +  +  +       R
Sbjct: 134 AEGKAIVQDLIKNEEFHYIELTHKSEFVDKMWDIGQAIHQNRYLEMDYKRTKDGAIVKRR 193

Query: 153 LAPCRLLIHQQTWYLVAEHEGH-------------IAVFTLDEIHLIQPLQETFR 194
           + P  ++  +  +YL A  E                 ++ +D I   + L + F+
Sbjct: 194 VKPVAIMFSEYYFYLTAFIEDEDVKADFDVIDDAFPTIYRIDRIAGYKVLDKQFK 248


>UniRef50_D0L3I9 Helix-turn-helix type 11 domain protein n=1 Tax=Gordonia
           bronchialis DSM 43247 RepID=D0L3I9_GORB4
          Length = 328

 Score = 57.2 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 69/210 (32%), Gaps = 21/210 (10%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66
           A RL  ++  L     ++  +LA E  VS RT+ RD          +Y +     G+  L
Sbjct: 3   AERLLAVLMLLKTHSRMTAAQLADELDVSERTVLRDIDALSLSGIPVYAERGRHGGFALL 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVNALLMCDES------------P 110
               +++  +         +G   L    F    R++  +L     +            P
Sbjct: 63  PGYRTDLSGLTLDEARTLVAGGGRLDSPAFASAMRKVAASLPDAFRTSAVRAAQRILLRP 122

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAE 170
                        G +            R     AE      L P  L++   TWYLVA 
Sbjct: 123 EGFVHPPREIDALGPVQQAVFDGRRIRVRYRRRGAERAAERVLDPIGLIVAGDTWYLVAT 182

Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
            +G   ++ +  +  ++ L E   R D + 
Sbjct: 183 ADGTERMYRMSRMSDVEILDEPAARADDVD 212


>UniRef50_Q11UB6 Transcriptional regulator, DeoR family n=7 Tax=Bacteria
           RepID=Q11UB6_CYTH3
          Length = 230

 Score = 57.2 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 67/209 (32%), Gaps = 25/209 (11%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR---ERLMYLDLEYQSGYCRLRTAG 70
           RL+ II++L     L+  +LA  F VSVRT+ RD R   +  + +  E   GY  +    
Sbjct: 11  RLTAIITQLQTKRLLTATELANRFSVSVRTIYRDIRALEQSGVPILTEEGKGYTLMEGYR 70

Query: 71  SEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWR 130
               M  +    A       +    D   V       +    +         +      R
Sbjct: 71  IPPVMFTESQANALILAEQLVLKNKDASFVQHYSEAIDKIKAVLGHPIKDKVNLLAERTR 130

Query: 131 LIQ----------------AITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVA- 169
             Q                A+T      +      E +    + P  LL  Q+ W LVA 
Sbjct: 131 FDQNTNRERNSKDLSDLQFALTNFYLTRIEYINEAEAQTDRLIEPFALLSTQENWLLVAW 190

Query: 170 -EHEGHIAVFTLDEIHLIQPLQETFRRND 197
                    F LD I  ++   E F  ++
Sbjct: 191 CRLRNEFRYFRLDRIKKLEIQTEKFNPHN 219


>UniRef50_A5FLV0 Helix-turn-helix, type 11 domain protein n=3 Tax=Flavobacteriales
           RepID=A5FLV0_FLAJ1
          Length = 319

 Score = 57.2 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 70/219 (31%), Gaps = 34/219 (15%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSG-------YCR 65
           R+  I+ +L + + +  ++LA  F  S+RT+ RD R      + +  ++G         R
Sbjct: 11  RIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAGVGYALMDGYR 70

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLF--PGLDRRLVN--------------ALLMCDES 109
           L      M    +V  F     L   F  P L     +                L   ES
Sbjct: 71  LPPV---MFTREEVSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKDYLSNIES 127

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQT 164
             V+  A P+ + +   +   L + I  ++++ L  +           L P  +      
Sbjct: 128 RIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQILLTYKTFDKEETTQRNLEPVGVFHDNNN 187

Query: 165 WYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCR 201
           WY +           F  D I  I+     F        
Sbjct: 188 WYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALE 226


>UniRef50_D0LH85 Putative DeoR-family transcriptional regulator n=1 Tax=Haliangium
           ochraceum DSM 14365 RepID=D0LH85_HALO1
          Length = 369

 Score = 57.2 bits (137), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 10/114 (8%)

Query: 93  PGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL---SFWRLIQAITGRRRVTLIAEGRR 149
           P      +           V+       + +       F +L  A   R+R++L      
Sbjct: 151 PDTPSEFLAQARTATRRDPVLVHFPANTAANARELGDRFSQLEAATRNRKRLSLHYRNAS 210

Query: 150 C-----ERLAPCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRN 196
                   + P  L+  Q  WY+V        +  F  D I  ++   +    +
Sbjct: 211 TAEVQARDVDPYGLIYRQGAWYVVGYCHLREDVRSFRFDRIEELKIAPKPKSPD 264


>UniRef50_A8W027 Regulatory protein GntR, HTH n=1 Tax=Bacillus selenitireducens
           MLS10 RepID=A8W027_9BACI
          Length = 328

 Score = 57.2 bits (137), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 64/214 (29%), Gaps = 28/214 (13%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLE----YQSGYCRL-R 67
            RL  I+  L   +T++  +LA     + RT+ RD    L     E     + GY  L  
Sbjct: 10  ERLFYIMQFLSNHDTVNAGELADHCQATKRTIYRDIH-FLQSQGHEIQTQGREGYKLLIP 68

Query: 68  TAGSEMQMVPD-----VLIFAHRSGLAGLFPGLDRRLVNAL-----LMCDESPCVIAPAN 117
                 ++  D      L     SG+A       R     L     L    +P       
Sbjct: 69  NMQVRSKLTEDEWLSLTLYPLLSSGIASSDHPYHRHYKTGLEKVMRLASGGAPNPAFAER 128

Query: 118 PVPSPSGALSFW-----RLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTWYL 167
                    +F       +I AI+  R + +             RL P  L+  +   YL
Sbjct: 129 IRLHARTQDTFQAKVMPAIITAISDNRCIDVRYYAMHRSEWSERRLEPYYLVPREGHLYL 188

Query: 168 VA--EHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
           VA       I VF L+    +      F      
Sbjct: 189 VAFCRLRNDIRVFRLNRFEDVHVTDAPFTIPQDF 222


>UniRef50_A4FF91 DeoR-family transcriptional regulator n=17 Tax=Bacteria
           RepID=A4FF91_SACEN
          Length = 337

 Score = 56.9 bits (136), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 79/228 (34%), Gaps = 35/228 (15%)

Query: 32  KLAAEFGVSVRTLRRDFRER--LMYLDLE---YQSGYCRLRTAGSEMQMVPD-------- 78
           +LA   GVS RT+RRD  +   L Y  +     ++G  RL        ++ D        
Sbjct: 25  ELAERLGVSARTVRRDVDKLRGLDY-PISVGMGRAGGYRLGAGARLPPLLLDDDEAVAVA 83

Query: 79  -VLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWR 130
             L  A  SG+AG+          L++ L + L    E+  V     P      A     
Sbjct: 84  VGLRTATGSGVAGVGETALRALVKLEQVLPDRLWRRIEALQVSTVEAPGAPSVDAGELTA 143

Query: 131 LIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDEIH 184
           +  A   R+R+                 P +L+   + WYLVA          F +D + 
Sbjct: 144 VATACRDRQRLRFDYRSHDGQETPRVTEPHQLVTWGRRWYLVAWDLERQDWRTFRVDRMR 203

Query: 185 LIQPLQETFRRN--DSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADS 230
              P    F           V   V  +A P+    Q ++   VPADS
Sbjct: 204 TRVPTGPRFAPRDMPDAAAFVASGV-ARAWPY----QATVRLAVPADS 246


>UniRef50_B9XP79 Helix-turn-helix, type 11 domain protein n=1 Tax=bacterium Ellin514
           RepID=B9XP79_9BACT
          Length = 334

 Score = 56.9 bits (136), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 68/216 (31%), Gaps = 34/216 (15%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF---RERLMYLDLEY---QSGYCR-L 66
           RL  +I +   G   +  K+A EF VS +++ RD    R+RL  L + Y   + GY    
Sbjct: 24  RLHQLIQK---GRYPNAPKVAREFEVSSKSIHRDLEFMRDRLG-LPIGYDQDRHGYYYTE 79

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGL---------------FPGLDRRLVNAL-LMCDESP 110
                    V +  + A       L               F  +   L + + +   +  
Sbjct: 80  EVGAFPTIQVTEGELLAMVVAEKALQQYRGTNFEKPLMTAFKKMSASLSDTVSVNIADFE 139

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTW 165
             I+ +           F  L +A   R+++ LI             + P  L      W
Sbjct: 140 QTISFSTRAEPILNLEIFDALGKAAANRQQLELIYRKPGQRETEVRVIDPYHLANINGEW 199

Query: 166 YLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199
           YL A       I  F    I   +   + F R    
Sbjct: 200 YLFAYDHLRNDIRTFVPARIKAFKLTGKRFPRPQKF 235


>UniRef50_Q3JYW1 Putative uncharacterized protein n=2 Tax=Streptococcus agalactiae
           RepID=Q3JYW1_STRA1
          Length = 316

 Score = 56.9 bits (136), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 40/232 (17%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRL 66
           + RL  I   +   +  +  +LA +F VS RT++RD  E  +     Y ++    GY  L
Sbjct: 4   SSRLIDIWLYINNHKKFTTTELATKFNVSTRTIQRDIDELSLLGVPFYSEVGRNGGYTML 63

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126
                          F+    ++ +                E   VIA      S S   
Sbjct: 64  HQEVLPPIS------FSEDEIISIILTYKSMIQYKDFPYQFEIESVIAKLLSNSSTSLLE 117

Query: 127 SFWRLIQ---------------------AITGRRRVTLIA---EGRRCERLAPCRLLIHQ 162
              ++ +                     A    + V ++    E +  + L P  +    
Sbjct: 118 RLSQVEKCFYLKIPVRNEKTPYLKEVFNASIKNKCVEVMYDSLENKNKKLLFPIGIYSDN 177

Query: 163 QTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
             WY  A       +  + +D I  +    +T + + +  RL  +  F   +
Sbjct: 178 GYWYFCAIDNHLKEVRTYRVDRIKSL-VTNDTIQCDKN--RLTIEDAFANQV 226


>UniRef50_A4BKA3 Predicted transcriptional regulator n=1 Tax=Reinekea blandensis
           MED297 RepID=A4BKA3_9GAMM
          Length = 235

 Score = 56.9 bits (136), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 34/224 (15%)

Query: 12  AVRLSLIISRLVAG--ETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSG-YCRL- 66
           A RL  I++ L+ G  + ++ ++L+    VSVRT+ RD         D+E ++G   RL 
Sbjct: 4   AERLLAILN-LLRGRHQAMTAQQLSEHLDVSVRTIYRDIEALCRQGADIEGEAGIGYRLT 62

Query: 67  RTAGSEMQMVP----DVLIFAHRSGLAGLFPGLDRRLVNAL--------------LMCDE 108
                          + L F  R   A   P L +    AL              +    
Sbjct: 63  DRGHLPPLTFTIDELEALTFGARLVKASADPTLAQAADQALQKVRSVLPAHRQHEIERRR 122

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQT 164
           +P ++A          A     + QAI   R V+   +  +       + P  L+     
Sbjct: 123 APMLVATHTSTHLSQYAAE---IRQAIAAERLVSFGYQDEKRRQTDRTVQPLGLVYWGYC 179

Query: 165 WYLVA--EHEGHIAVFTLDEIHLIQPLQETF-RRNDSLCRLVED 205
           W+LVA         VF L+ +  ++   + F R   ++ + +++
Sbjct: 180 WHLVAWCLLRESYRVFRLERLQHLEVTDQRFCRPEATIQQYLQE 223


>UniRef50_C2C3S2 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601
           RepID=C2C3S2_LISGR
          Length = 313

 Score = 56.5 bits (135), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 21/199 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL------MYLDLEYQSGYCRLR 67
           RL  ++  L++ + LS ++LA +  VSVR++ R + E L      +Y       G   L 
Sbjct: 19  RLFKMVYLLMSNDKLSAKELADKLEVSVRSVYR-YMENLSEAGIPIYASQGRNGGISLLP 77

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGL--FPGLDRRLVNALLMCDESPCVIA----PANPVPS 121
                  +V +       + L         D+  ++ L    +   +      P+    S
Sbjct: 78  QFRMNSALVSEKEQNDILASLQSFASIEQSDQDTLDKLSAVFQKKPISWIEIDPSTWSNS 137

Query: 122 PSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGHI-- 175
                +   + QAI   + +T         +    + P +++   + WYL          
Sbjct: 138 REQKSTLAIIKQAIFQSQMLTFDYLNSKNEQLAREVYPYQVVFKDRAWYLKGYSIEREDW 197

Query: 176 AVFTLDEIHLIQPLQETFR 194
            +F L  +H +    +TF 
Sbjct: 198 RLFKLTRMHNVTI--DTFT 214


>UniRef50_A8FE45 Possible transcriptional regulator n=2 Tax=Bacillus pumilus
           RepID=A8FE45_BACP2
          Length = 310

 Score = 56.5 bits (135), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 28/213 (13%)

Query: 9   DRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYC--- 64
           DR+   + L+IS+    + +  + LA    VS RT+ RD        + +    G     
Sbjct: 4   DRILSTVMLLISK----KQVQAKDLAELHEVSTRTIYRDIDTINQAGIPVVTTQGAGGGI 59

Query: 65  -RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALL------------MCDESPC 111
             +     E ++  D  I    + L  +      +    +L              ++   
Sbjct: 60  SLVEDYRLEKKLFTDDDIEVILTALESMMSAYSFKESEHVLKKIKSLIPTQTGENEKQHH 119

Query: 112 VIAPANPVPSPSGALSFWRLIQ-AITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166
           V    +     S A    +LI  A +  + +       +       + P  L++  + WY
Sbjct: 120 VFIDLSSWGKDSQAEQKLQLIHTAASAHQYIQFTYRNAKGETLPRNVEPYTLVLKGRHWY 179

Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQETFRRND 197
           L A         +F L  +  +  +   F+   
Sbjct: 180 LYAFCCVKKAFRLFKLTRMTGLVAISGYFQPKR 212


>UniRef50_Q03GJ9 Predicted transcriptional regulator n=7 Tax=Bacteria
           RepID=Q03GJ9_PEDPA
          Length = 310

 Score = 56.5 bits (135), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 24/207 (11%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCR 65
           + + RL+  +  L    +  ++ L  EF +S RT  RD +E     L Y     ++G  R
Sbjct: 2   KKSERLNQELIFLRDKYSFQLKDLITEFDISKRTALRDIQELEAMGLAYYTEPGRNGGYR 61

Query: 66  L--RTAGSEMQMVP----------DVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP--- 110
           L  ++    +                L     +     +  + ++L   +   ++     
Sbjct: 62  LLNQSNLIPIYFNKKEVQAIFFALKALRVLSVTPFDESYARIQQKLFATMSPENQQDISN 121

Query: 111 -CVIAPANPVPSPSGALSFWRLIQAITGRRR--VTLIAEGRRCERLAPCRLLIHQQTWYL 167
              +   + V       +   ++ AI   +   +          +L    L      W+ 
Sbjct: 122 LLAVVHYHNVAPVGDVANLEIILNAILEEQVIQIHYTQYEDVHIQLQIYELFYRNGIWFT 181

Query: 168 VAEHEGHIA--VFTLDEIHLIQPLQET 192
            A +   +    +  D +H ++     
Sbjct: 182 SAYNPDTLRWGTYRCDYMHDLKINPTK 208


>UniRef50_UPI000185CDFC conserved hypothetical protein n=1 Tax=Capnocytophaga sputigena
           ATCC 33612 RepID=UPI000185CDFC
          Length = 302

 Score = 56.5 bits (135), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 31/228 (13%)

Query: 14  RLSLIISRLVAGET-LSVRKLAA-------EFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
           RL  II  L   +  LS + +A        E+  S RT+RRDF +  +   ++       
Sbjct: 9   RLVHIIRLLTTHKNGLSAQSIADYLADEGDEYAFSNRTIRRDFDDIYIAFGIDIT----- 63

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
           L        + PD         +A     LD  L+       ++   +     V    G 
Sbjct: 64  LNAKEKVWAINPD--------SIANKQSILDHLLLVDAHRKAKNTGTLL--LEVQPEKGL 113

Query: 126 LSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYLVAEHEG---HIAV 177
                ++ AI+    +T        E  +  ++ P  +  +Q  WYL+A        +  
Sbjct: 114 EMLDPILTAISQNVLITFTHTSFGWETTKAYQVLPYAVKEYQGRWYLIATDNKQPIKLKA 173

Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
           F LD I  ++ +    +R         D  +  A+     +Q  +L+F
Sbjct: 174 FALDRISNLEVIDIQVKRKKIDMESFFDHFYGVAIAEGEPLQKVVLSF 221


>UniRef50_Q11X99 Transcriptional regulator, DeoR family n=2 Tax=Sphingobacteriales
           RepID=Q11X99_CYTH3
          Length = 231

 Score = 56.5 bits (135), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 31/226 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR---ERLMYLDLEYQSGYCRLRTAG 70
           RL  +I+ L A + +S  K+A +F +S RT+ RD +   E+ + +  E   GY  +    
Sbjct: 8   RLLGMITLLQAKKFVSAEKIADKFKISKRTVFRDIKAICEQGIPVGSEPNKGYFIVDGYF 67

Query: 71  SEMQMVPD------------VLIFAHRSGLAGLFPGLDRRLVNALLMCD-----ESPCVI 113
               +  +            V  FA +S ++  +     ++   L   D          I
Sbjct: 68  LPPVLFNNDEANALLLTESLVKGFADKS-ISKHYSNALDKIKAGLKQVDKDKLEHMQDAI 126

Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVA 169
               P    +       L  A++ ++ + +  +  +       + P  L+ +  +W+L+ 
Sbjct: 127 KFQLPERMNNDFEYLSILQVAVSDKKIIYIDYKNNKEEVSKREIEPIGLIFYAFSWHLIG 186

Query: 170 --EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
              H      F +  I  ++     F++N      +    +++ LP
Sbjct: 187 WCHHRKAYRDFKVSRIIQMKNTGVPFKKNKH----MPLSEYMKELP 228


>UniRef50_C0ZA21 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZA21_BREBN
          Length = 306

 Score = 56.5 bits (135), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 75/222 (33%), Gaps = 28/222 (12%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL------EY 59
            R DRL   L LIIS+     T++ ++LA  F VS+RT+ RD  E+L    +        
Sbjct: 1   MRVDRLLSML-LIISK---KGTVTGKELAEHFEVSIRTIYRDI-EKLGEAGIPIASIGGK 55

Query: 60  QSGYCRLRTAGSEMQMVP--DVLIFAHRSGLAGLFPGLDRRLVNALL--------MCDES 109
             GY  +     +   +   +   F           G +    + +L          + S
Sbjct: 56  GGGYYIMEDYNVDNLFLNKDEASTFMAIMNNLSFLFGKNTTFHDIVLKIENTLKQEKNTS 115

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165
              I  ++             L  AI   + V      R        + P ++      W
Sbjct: 116 KLDINLSHFSMENELKEYLLLLNNAIEKNKLVVFEYINRSMEYLERTVEPFQITFSAGQW 175

Query: 166 YLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
           YLV           F L  I  ++  ++ F + D   + +E+
Sbjct: 176 YLVGFCKERNGYRRFKLVRIKNLKMGED-FEKKDISNKEIEE 216


>UniRef50_D1BRS2 Helix-turn-helix type 11 domain protein n=2 Tax=Micrococcineae
           RepID=D1BRS2_XYLCX
          Length = 320

 Score = 56.5 bits (135), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 31  RKLAAEFGVSVRTLRRDFRERLMYL--DLEYQ---SGYCRLRTAGS-------------- 71
           ++LA   GV+ RT+R D   RL  L   +       G  RL                   
Sbjct: 24  QELAQRLGVTDRTVRNDVA-RLRELGYPVHTTRGPGGRYRLGAGAVLPPLLLDDEEAVAI 82

Query: 72  --EMQMVPDVLIFAHRSG-----LAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
              ++    +  F    G     L  + P   RR + AL     +  V   +N       
Sbjct: 83  AVGLRATTGMKAFEESGGRALTKLEQVMPQRIRRRIEALRSATSAGPVNTDSNVEDPVVE 142

Query: 125 ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDE 182
                 +  AI  RR +    E R  E + P  L++ Q+ WYLV      G      +D 
Sbjct: 143 PELLTEISAAIRDRRTLRCDYEQRTVE-VEPYHLVVWQRRWYLVCRDVASGRWEPLRVDW 201

Query: 183 IHLIQPLQETFRRND 197
           I L  P    F    
Sbjct: 202 IRLRTPGGRRFSPAP 216


>UniRef50_Q12H80 Helix-turn-helix, type 11 n=7 Tax=Proteobacteria RepID=Q12H80_POLSJ
          Length = 316

 Score = 56.5 bits (135), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 32/230 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYCRLRTAGSE 72
           R+  ++  L A   LS  +LA    V  RTLRR   +     + +  + G     +  + 
Sbjct: 7   RVLTVLELLQAHGRLSGAELARRLEVDGRTLRRYIAKLESLGIPVVAERGRYGCYSLVAG 66

Query: 73  MQMVPDVLIFAHRSGLA---GLFPGLDRRLVNALLMCDESPCVI-----APANPVPSPSG 124
            ++ P  ++F     LA   GL       L  A      +   +               G
Sbjct: 67  FKLPP--MMFTDDEALALSIGLVAARGLGLAEAAPAVQSAQAKLERVMPGKLKNRIRALG 124

Query: 125 ALSFWRLIQAI---------------TGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165
                 L +A+                G +RV L  +            P  L      W
Sbjct: 125 ETVTLDLTRAVAPGDNTALLALSAAAHGWQRVHLSYQSADGVVTERDFDPYGLAYRGGRW 184

Query: 166 YLVAE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
           Y+V      G +  F LD +  +QPL   F        +    + +  +P
Sbjct: 185 YVVGLCHLRGGLRSFRLDRVQQVQPLNAVFTPPADFNAVQHLALGLATMP 234


>UniRef50_C7NJB0 Predicted transcriptional regulator n=1 Tax=Kytococcus sedentarius
           DSM 20547 RepID=C7NJB0_KYTSD
          Length = 238

 Score = 55.7 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 73/211 (34%), Gaps = 30/211 (14%)

Query: 9   DRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-----GY 63
           D  + R  +++S L      +  +LA    ++ RT+RRD   RL  L  + +S     G 
Sbjct: 2   DSPSSRALVLLSLLQTRRAWTALELARHLDIAERTVRRDI-SRLRSLGYDIRSAPGPGGT 60

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLF------PGLDRRLVNALLMCDESPCVIAPAN 117
            RL  +     ++ D         + GL       P      V A L     P +   A 
Sbjct: 61  YRLVPSIKIPPLLLDADEVCSL--VTGLLILEAGSPDTAAAAVRAKLEQLLPPRLRHRAA 118

Query: 118 ------PVPSPSGALSFWRL----IQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQ 163
                  V +P    + W L     +A+  ++ +      +        + P R ++   
Sbjct: 119 ATALATQVITPVAKTADWHLLGLLAEAVAQQQHLQFTYTDQHGEVTERLVNPYRHVLRNG 178

Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQET 192
            WYLVA         +F LD IH   P    
Sbjct: 179 IWYLVAFDTKRDDWRLFRLDRIHDASPRPAP 209


>UniRef50_UPI0001794C37 hypothetical protein CLOSPO_01499 n=1 Tax=Clostridium sporogenes
           ATCC 15579 RepID=UPI0001794C37
          Length = 352

 Score = 55.7 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 26/205 (12%)

Query: 22  LVAGETLSVRKLAAEFGVSVRTLRR---DFRERLMYLDL--EYQSGYCRLRTAGSEMQMV 76
           L +   + +  +A E  V  R +RR   D  +  +Y++   E   GY            +
Sbjct: 40  LKSRGKMKINDIARELEVDERQVRRYRNDLEQAGIYIEYTSERYGGYQYEEQDYLLDLNL 99

Query: 77  PDVLIFAHRSGLAGL-----FPGLDRRLVNAL---LMCDESPCVIAPANPVPSPSGALSF 128
                      L  L         D +L+      L   E+  +I     V +     ++
Sbjct: 100 TKEERSVILMALEQLKYDNFICYRDFKLIVDKINCLNERENNDLIHAEYFVKNTKINYNY 159

Query: 129 WR-------LIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVA--EHEGHI 175
            R       +  AI  R ++ +       G +   + P  +  ++ + Y V   E    I
Sbjct: 160 EREKNIWIDINAAIITRNKIKIKYNSLNTGEKERIVRPYAVFQYKGSMYFVGYCELRQKI 219

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLC 200
             F +  I   + L E F R  +  
Sbjct: 220 REFKISRIMSYEILGEKFERAHNFN 244


>UniRef50_C8X624 Helix-turn-helix type 11 domain protein n=1 Tax=Nakamurella
           multipartita DSM 44233 RepID=C8X624_NAKMY
          Length = 335

 Score = 55.7 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 64/207 (30%), Gaps = 44/207 (21%)

Query: 32  KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMVPD-------- 78
           +LA   GVS RT+R+D  +RL  L      +    GY  L    S   ++ D        
Sbjct: 25  ELAERLGVSDRTVRKDI-DRLRSLGYPVDAVRGAGGYYELGVGASMPPLLLDEDEAVAVA 83

Query: 79  --VLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALS--------- 127
             +   +  +G+         +L   L    +          V  P    S         
Sbjct: 84  VGLRAASGIAGIEETSVRALAKLDAVLPHHLQRQVAAVHEAVVQGPENTGSNVADPVVDA 143

Query: 128 --FWRLIQAITGRRRVTLIAEGRRC---------------ERLAPCRLLIHQQTWYLVAE 170
                L  AI  R  V                         ++ P RL+  Q+ WYLVA 
Sbjct: 144 GLLTELSAAIRDRVEVRFDYRADPDSALSAASGAASVVDRRQVEPYRLVSWQRRWYLVAR 203

Query: 171 HE--GHIAVFTLDEIHLIQPLQETFRR 195
               G  A + +D + L  P    FR 
Sbjct: 204 DARTGSWAPYRVDWLTLKTPGGRHFRP 230


>UniRef50_A4SCA2 Helix-turn-helix, type 11 domain protein n=7 Tax=Chlorobiaceae
           RepID=A4SCA2_PROVI
          Length = 341

 Score = 55.7 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 34/221 (15%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFR--ERLMYLDLEY----------Q 60
           VR+  I  +L      +  K+A  F VS ++++RD      L++  +EY          +
Sbjct: 9   VRMQYIDQQLRDNHYPNCTKIAKYFEVSSKSIQRDIDYMRDLLHAPIEYDRKKRGYFYEE 68

Query: 61  SGYCRLRTAGSEMQMVPDVLI---FAHRSGLAGLFPGLDRRL--VNALLMCDESPCVIAP 115
            G+  L     E++    ++       +      +  + R L  V   L  + +   +  
Sbjct: 69  DGWSYLAATTLELREAEALIATTKVLQQYQGTPYYNEVSRALDKVRQYLPENSAANQLLS 128

Query: 116 ANPVPSPSG----ALSFWRLIQAITGRRRVTLIAEGR---------RCERLAPCRLLI-- 160
              +  P+     +  F  +  AI  R ++T+                  L P       
Sbjct: 129 VYSIEQPTHQAVDSRMFASVEDAIRRRLKITMTYRASYRAASSEAVTERTLHPYMFHYSQ 188

Query: 161 HQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199
            + TWYL+   E    I  F L+ I  +   +  F   +S 
Sbjct: 189 SRDTWYLIGYCELRKDIRTFALNRIRTLSVTEHPFTVPESF 229


>UniRef50_C1I3X2 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium sp.
           7_2_43FAA RepID=C1I3X2_9CLOT
          Length = 245

 Score = 55.3 bits (132), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 10/125 (8%)

Query: 83  AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVT 142
              + + GLFP    + +                N         +  ++ +A+  ++ + 
Sbjct: 34  CTLAKIKGLFPEEHIKEIELKSNQISIDLTPWIGNK----DLKSNLEQIKKAMNDKKILR 89

Query: 143 LIA----EGRRCERLAPCRLLIHQQTWYLVAE--HEGHIAVFTLDEIHLIQPLQETFRRN 196
                    +   ++ P +L++ +  WYL      +    +F L  I  I+ ++E+F   
Sbjct: 90  FNYFDSKGKKSNRKVEPYQLVLKESNWYLQGYCISKQDFRIFKLSRISDIKVIEESFITR 149

Query: 197 DSLCR 201
           +   +
Sbjct: 150 EFNLK 154


>UniRef50_A5TXA7 Possible transcriptional regulator n=2 Tax=Fusobacterium nucleatum
           RepID=A5TXA7_FUSNP
          Length = 309

 Score = 55.3 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 39/231 (16%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLE---------YQSGY 63
           +RL  +  RL+  E + ++K A E  V++RT  RD +    +L  +          +  Y
Sbjct: 4   IRLLELYDRLLKNEDIDIKKYAEENKVNIRTAERDIKTIRNFLAKKKKTELIHNSKKKKY 63

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES---------PCVIA 114
               T  S      ++L  +     +  F   +  L+   ++   S           +  
Sbjct: 64  QLTYTEDSINLTKSEILAISKILLASRAFLKDEISLIVDKIVKQCSSEDDLELIQNLLKN 123

Query: 115 PANPVPSPSGALSF----WRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166
                       SF    W L QAI  ++++ +  +          + P  L+  +  +Y
Sbjct: 124 EKFHYIELQHKKSFINNIWDLGQAIKNKKKIEISYKKMNGKIVKRVIDPVGLMFSEFYFY 183

Query: 167 LVA-------------EHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVE 204
           L+A             + + +  ++ +D I     L E F       R  E
Sbjct: 184 LLAHIENIDKEKHFDNKDDEYPTIYRVDRIEDFDVLNEKFIPTLYTNRFQE 234


>UniRef50_B1QLR3 HTH domain protein n=9 Tax=Clostridium RepID=B1QLR3_CLOBO
          Length = 309

 Score = 55.3 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 74/213 (34%), Gaps = 20/213 (9%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67
            RL  I+  ++  + +S   LA  F VS RT+ RD          +Y ++  + GY    
Sbjct: 4   ERLLGILFYIINRDNVSANNLAEHFNVSRRTILRDINTLTLAGIPIYSEVGSKGGYSINP 63

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRR-------LVNALLMCDESPCVIAPANPVP 120
                 +++ +         L  L      +        V  +     +   +     + 
Sbjct: 64  DYRLNEKIIDNANSEYMLLALQSLKSVYGEKKVHETYEKVKHIYSDKNNNHALNIDFSIV 123

Query: 121 SPSGALSFWR--LIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGH 174
           + + +++F+   L +AI   + V+          R  +     +L    +WY        
Sbjct: 124 NENRSITFYISMLKEAIQHNKTVSFQYTNLNGDTRIVKCNIIHVLYKWYSWYAFGYDLEK 183

Query: 175 --IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
               +F +  +  ++  +  F  +  + +L++D
Sbjct: 184 SDFRMFKIVRMRNLEISEMYFDNDYDVTKLLDD 216


>UniRef50_C1ZFR8 Predicted transcriptional regulator, COG2378 n=1 Tax=Planctomyces
           limnophilus DSM 3776 RepID=C1ZFR8_PLALI
          Length = 321

 Score = 55.3 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 34/223 (15%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMY-LDLEYQSGYC----- 64
           RL  +I  L +G   +  +LA E GVS RT+ RD    +E  ++ L  E + GYC     
Sbjct: 8   RLLRLIQALQSGRLCNSVQLAEECGVSRRTIFRDISILQEAGIHVLYDEERQGYCMPLRL 67

Query: 65  RLRTAGSEMQMVPDVLIFA-----HRSGLA----------GLFPGLDRRLVNALLMCDES 109
            +  +   +     +L+F        +G+            +  GL R +   +    ES
Sbjct: 68  TIPASQLSLSEAISLLLFCSELSDSTTGIPFQQDARQAAMKILEGLPRSVRETVAEITES 127

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCER-----LAPCRLLIHQQT 164
             +   +           +  L+ A+  R ++ +              L+P RLL  +++
Sbjct: 128 MSIRIDSRN-QLIGSQSLYEVLLSALIRREQIRVRYHSLTEASPLSTLLSPYRLLFSRRS 186

Query: 165 WYLVAEH--EGHIAVFTLDEIHLIQPLQETFR--RNDSLCRLV 203
           WY++        +  F +  +  ++     ++     SL R +
Sbjct: 187 WYVIGRSSWHRTVRTFNVGRLEQLELAGTFYKIPPRFSLDRYL 229


>UniRef50_Q74H44 Putative uncharacterized protein n=1 Tax=Geobacter sulfurreducens
           RepID=Q74H44_GEOSL
          Length = 320

 Score = 55.3 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 34/210 (16%)

Query: 20  SRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERL---MYLDLEYQSGYCRLRTAGSEM 73
           S++  G   +   LA +F   ++T +R    FR+RL   +  D   +            +
Sbjct: 15  SQIRNGCYPNASALARKFEFDIKTAQRSIEYFRDRLGAPLDYDASRRGYRYYDPNYQLPV 74

Query: 74  QMVPDVLIFAHRSG-----------LAGLFPGLDRRL---VNALLMCDESP----CVIAP 115
             + +  + A  +            L      +  RL   ++  L    +P         
Sbjct: 75  THLSESELVALLASRKLLTDAAAGPLGDELEKVSNRLGALLSNGLKGKINPERAFSFRWN 134

Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVA- 169
                 P     F + + A+   R +T               + P  ++ +   W+L+A 
Sbjct: 135 GMAASDPVI---FEQAVSALLSCRLLTFCYYSPLAGACTARTVEPHHMINYMGAWHLIAW 191

Query: 170 -EHEGHIAVFTLDEIHLIQPLQETFRRNDS 198
                    F L  + L    +E F   D 
Sbjct: 192 CRLRNDWRDFHLARVSLAHLEEEIFSPRDE 221


>UniRef50_D2PY48 Helix-turn-helix type 11 domain protein n=6 Tax=Actinomycetales
           RepID=D2PY48_9ACTO
          Length = 331

 Score = 55.3 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 33/198 (16%)

Query: 32  KLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRTAGSEMQMVPD-------- 78
           +LA+   VS RT+R D  +RL  L      +   +G+ +L        ++ D        
Sbjct: 29  ELASRLNVSTRTIRNDV-DRLRELGYPVDAVRGPAGHYQLGVGAKLPPLLLDDEEAVAVA 87

Query: 79  --VLIFAHRSGLAG----LFPGLDRRL---VNALLMCDESPCVIAPANPVPSPSGALSF- 128
             +   A  SG+          L++ L   +   +    +     P N   +        
Sbjct: 88  VGLRTGAGVSGMEESSGRALAKLEQVLPHRLRRQVNAIHTTLSKGPDNTGSNVQDPEVDP 147

Query: 129 ---WRLIQAITGRRRVTLIAEGRRCER-----LAPCRLLIHQQTWYLVAEHE-GHIAVFT 179
                +  AI     +         +      + P RL+  Q+ WYLVA  E G    + 
Sbjct: 148 AVVTTIAAAIRDEHYLRFEYAVPGTDPGFPILVEPYRLVSWQRYWYLVARDESGQWRTYR 207

Query: 180 LDEIHLIQPLQETFRRND 197
           +D + L       +R   
Sbjct: 208 VDWMDLRMATGRRYRPRP 225


>UniRef50_D2BDR8 Helix-turn-helix type 11 domain protein n=9 Tax=Actinobacteria
           (class) RepID=D2BDR8_STRRD
          Length = 327

 Score = 54.9 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 33/207 (15%)

Query: 24  AGETLSVRKLAAEFGVSVRTLRRDFRERL------MYLDLEYQSGYCRLRTAGSE-MQMV 76
               ++  +L+ E  VSVRT+ RD  E L      +Y D     GY  L    +    + 
Sbjct: 15  TRGRMTATELSEELEVSVRTVYRDV-EALSSAGVPVYADRGPAGGYRLLDGYRTRLNGLT 73

Query: 77  PDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRL----- 131
            +       +GL G  P  +  L       +       P  P    S     + L     
Sbjct: 74  AEEASSLFLAGLPG--PAAELGLGEVAANAELKLLAALPPEPRFHASRMRERFHLDVPGW 131

Query: 132 -------------IQAITGRRRVTLIAEGRRCERL----APCRLLIHQQTWY-LVAEHEG 173
                         +A+  +R + +         +     P  L++   +WY + A   G
Sbjct: 132 YRGADEAPFLGEVSEAVWDQRPLRMTYRRWGPRDVERLAHPYGLVLKGGSWYMVAAVGGG 191

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLC 200
               + +  I   +  +  F R     
Sbjct: 192 EPRTYRVSRIIAAEIAEGRFERPGDFE 218


>UniRef50_A7GU32 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillus cereus
           group RepID=A7GU32_BACCN
          Length = 303

 Score = 54.9 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 69/221 (31%), Gaps = 28/221 (12%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLE----YQSGYCRLR 67
            R+  I+  L+  + +S  +LA  F VS RT+ RD        + +        G+  + 
Sbjct: 4   ERMLSILIYLLQKDIISAEELANTFEVSKRTIYRDIDALSAIGIPIISYLGKNGGFTLID 63

Query: 68  TAGSEMQMVPDVLIFAHRSGL---AGLFPGLDRRLVNALL--------MCDESPCVIAPA 116
               +     +        GL   + LF      ++   +            +  V    
Sbjct: 64  NYRLDKFTFSEEEKRFLLEGLTLKSELFDDEQLSILQKKIEVLKETKRDHTSNMTVSFST 123

Query: 117 NPVPSPSG--ALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVA- 169
               +          +++  I   +++ +    +        + P +L     +WYL A 
Sbjct: 124 LHRETIEEETKQKVKKVLVMIEKEQKLQISYVSQTGHLSKRIIQPLKLNFMNGSWYLEAV 183

Query: 170 -EHEGHIAVFTLDEIHLIQPLQET----FRRNDSLCRLVED 205
                 + VF L  I  +  + +     + R     +  ++
Sbjct: 184 CVLRKALRVFKLTRIRRMDIIDDNTEIVYDRKPEFIKERKE 224


>UniRef50_UPI0001C30F15 Helix-turn-helix type 11 domain protein n=1 Tax=Conexibacter woesei
           DSM 14684 RepID=UPI0001C30F15
          Length = 220

 Score = 54.9 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQS-GYCRLRT 68
           RL  ++  L A  T++  +LA E GVS RT+ RD  E L      L+ E+   G  R+  
Sbjct: 5   RLLTLVGLLQARGTMTAEQLAGELGVSRRTVYRDV-EVLATAGVRLEAEHGPAGGYRIPR 63

Query: 69  AGSEMQ---MVPDV--LIFAHRSGLAGLFPGLDR-------RLVNAL-LMCDESPCVIAP 115
                      PDV  L  A       + P LD        +L+ AL             
Sbjct: 64  DTVRTLLALTGPDVEALTLARIVA-GSVEPALDAGAEHAEAKLLAALGPDARARAARTRR 122

Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175
              V   + A +    + A+  +R V L A G     L    ++     W+LVA+    +
Sbjct: 123 RFLVRETAPAPALGIAMHAVRDQRWVRLSAPGEAARELRALGMVHDDDGWHLVADDGARL 182

Query: 176 AVFTLDEIHLIQPLQETFRR 195
               LD+   +  L   F  
Sbjct: 183 CALLLDDSTDLVALDARFEP 202


>UniRef50_A6C2W1 GntR family transcriptional regulator n=1 Tax=Planctomyces maris
           DSM 8797 RepID=A6C2W1_9PLAN
          Length = 329

 Score = 54.9 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 32/213 (15%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSGYCRLRTAG 70
           RL  +I+ L +G   +  +LA+E  VS RT+ RD    +E  +Y+  + +    +L    
Sbjct: 8   RLLRLIALLQSGRVYNSAQLASECEVSRRTVFRDLKTLQESGIYVLYDDEKQGYQLPWRT 67

Query: 71  S---EMQMVPDVLIFAHRS-------------GL-----AGLFPGLDRRLVNALLMCDES 109
               +     +VL     S             G+     A +   L   L   ++   +S
Sbjct: 68  IVPFKDLTFEEVLALFVLSQDLDKTIVGLPLDGIAHTASAKILSSLPDALREQVIEAAQS 127

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCER--LAPCRLLIHQQT 164
              I      PS    L +  +++A+T ++ V +       ++     L+P  +L   + 
Sbjct: 128 IS-IWLTPCNPSLRNELHYKTILKAVTSKQNVRIQYVCPNEQKTASTMLSPYHMLYSNRQ 186

Query: 165 WYLVAEHE--GHIAVFTLDEIHLIQPLQETFRR 195
           WY+V        I VF + ++   + L E F++
Sbjct: 187 WYVVGRSSVDRGIKVFPIQKMIKSELLDEKFKK 219


>UniRef50_D1CH46 Helix-turn-helix type 11 domain protein n=1 Tax=Thermobaculum
           terrenum ATCC BAA-798 RepID=D1CH46_THET1
          Length = 320

 Score = 54.9 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 68/222 (30%), Gaps = 37/222 (16%)

Query: 27  TLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG---------YCRLRTAGSEMQMV 76
            ++ R+LA +  VS RT+ RD     +  + +  Q G            L   G   + +
Sbjct: 18  KVTARELAEKLEVSERTIHRDMEALGMAGVPIYAQRGAGGGWALLPGYELDVPGIGPEEL 77

Query: 77  PDVL-----IFAHRSGLAGLFPGLDRRLVNALLMCDESPCV------IAPAN----PVPS 121
             +L           GL         + +   L       +      +        P   
Sbjct: 78  EVLLLGHSPKLLSDLGLGSKLEAAYGK-LALALQPQHRESLDRVRERLYVDPVGWRPREE 136

Query: 122 PSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
               L    L +A+   R   L             + P  L++   +WYLV   EG +  
Sbjct: 137 AVDLLPT--LYRAVWEERSARLRYRRADGQEVERWMQPLGLVVKGGSWYLVGAVEGEVRT 194

Query: 178 FTLDEIHLIQPLQETFRRNDSLCR----LVEDPVFIQALPHF 215
           + +  +  ++ L + F R                F ++LP +
Sbjct: 195 YRVSRMASVE-LGQHFDRPAGFDLARYWRDSQERFQESLPRY 235


>UniRef50_UPI000051035F putative DeoR family transcriptional regulator n=1
           Tax=Brevibacterium linens BL2 RepID=UPI000051035F
          Length = 314

 Score = 54.9 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 18/196 (9%)

Query: 12  AVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQSGYC----- 64
           A RL   I  L A    ++   LA    V+ RT+ RD  +     + +  ++G       
Sbjct: 5   AARLVSEIVILSARSVPITAANLAERLEVTERTVYRDLGDLSRMGVPVVTEAGPGGGISL 64

Query: 65  ---RLRTAGSEMQMVPDVL----IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117
                       +   D +      A   G A        ++++       S  ++   +
Sbjct: 65  LGTWTSPLSGMTRDELDSVLIGGAAAADLGFARELATAREKILSETESVFSSNVLVDGPD 124

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWYLVAE-HEG 173
              +     +   ++ A+   R +        G R     P  L++    WYL+A+   G
Sbjct: 125 WFMTHERPEALSVIVTALRSHRGLQFRYAARTGSRLRTAIPLGLVVKAGRWYLIAQPPGG 184

Query: 174 HIAVFTLDEIHLIQPL 189
               + +  +  I   
Sbjct: 185 RPRTYRVSRMTAIALR 200


>UniRef50_B2A7V3 Helix-turn-helix type 11 domain protein n=1 Tax=Natranaerobius
           thermophilus JW/NM-WN-LF RepID=B2A7V3_NATTJ
          Length = 312

 Score = 54.9 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 32/204 (15%)

Query: 31  RKLAAEFGVSVRTLRRD---FRERLMYLDLEYQSGYCRLRTAGSEMQMV-PD-------V 79
            +LA EF VSVRT+RRD     +    L ++   G   +           PD       +
Sbjct: 25  NELAQEFDVSVRTVRRDVSVLEQ--AGLPVQNYHGLRFMSDVELPKVQFEPDEVILLLLM 82

Query: 80  LIFAHRSGLA-----GLFPGLDRRL---VNALLMCDESPCVIAPANPVPSPSGALSFWRL 131
           + F  R  +       L+  L + L   +       +   +I P +      G     R 
Sbjct: 83  VNFISRYEIDNQIPNSLYEKLKQYLPEKMMDKYQHIQKSVLIHPHDNEQD--GRNIVRRF 140

Query: 132 IQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDEIH 184
              I  + RV +  +           + P  +   ++ WY+V     H+   +F  + I 
Sbjct: 141 KDIIECKNRVKIYYQSHSSKQENWRMVDPYGVFFKKRAWYMVGYCHRHLDIRIFKCNRIK 200

Query: 185 LIQPLQETF-RRND-SLCRLVEDP 206
            I+ L + +   ND  L   + D 
Sbjct: 201 KIKSLPDMYDIPNDFDLEEFLSDS 224


>UniRef50_C8QWX3 Transcriptional regulator-like protein n=1 Tax=Desulfurivibrio
           alkaliphilus AHT2 RepID=C8QWX3_9DELT
          Length = 334

 Score = 54.9 bits (131), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 80/236 (33%), Gaps = 43/236 (18%)

Query: 32  KLAAEFGVSVRTLRR-------DFRERL---------MYLDLEYQSGYCRLRTAGS-EMQ 74
            LAAEFG+S RT  R       +F   L          YLD ++Q     L       + 
Sbjct: 27  ALAAEFGISERTAGRAIEAMRVEFDAPLHYVHARRGYTYLDDQFQLPPFWLSQEEIFAVL 86

Query: 75  MVPDVLIFAHRSGLAGLFPGLDRRLVNAL----LMCDESPCVIAPANPVPSPSGALSFWR 130
           +  ++L       ++     L+R+L+  +    L  ++   + +   P  +P+ A  F  
Sbjct: 87  LARNLLSCCADGLISQAIASLNRKLLQQIADHGLAAEKFDQLFSATWPGYAPAPAEVFRP 146

Query: 131 LIQAITGRRRVTLIA-----EGRRCER--LAPCRLLIHQQTWYLVAEHEGHI--AVFTLD 181
             +A+  +R           +        + P  L  +Q  W L+A          F L 
Sbjct: 147 ATKALLEQRLFAFDYSSPLDQNGNYHSRLVEPHHLQHYQGNWVLLARCRKRCDWRKFVLS 206

Query: 182 EIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS------LLTFVPADSP 231
            +   Q   ETF  +           ++  L     I         ++ F PA +P
Sbjct: 207 RMQNPQISTETFTPHPR-------REWLPHLEGAYGIFQGRSPETAIIRFTPARAP 255


>UniRef50_C9YTR3 Putative transcriptional regulator n=8 Tax=Streptomyces
           RepID=C9YTR3_STRSW
          Length = 333

 Score = 54.5 bits (130), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 47/230 (20%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66
           A RL  ++  L +  +++  +LA E  VS RT+ RD +        +Y D   ++G  RL
Sbjct: 3   AARLIKMVLLLQSRPSMTAAELARELEVSERTVTRDAQALSEAGVPVYAD-RGRAGGYRL 61

Query: 67  -----------------------RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL 103
                                           + D    A     A L P      +   
Sbjct: 62  IGGYRTRLTGLARSEAEALFLSGVPGALREMGLEDAASAARLKVSAALLPS-----LRDA 116

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLI 160
                    +   +    P        +  A+   RR+              L P  L++
Sbjct: 117 SRTAAQRFHLDAPSWFQEPKTPELLPAVADAVWDDRRIVARYRRGDVEVGRELEPYGLVL 176

Query: 161 HQQTWYLVAEH----------EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
               WYL A            +G    + +D    ++   + F R++   
Sbjct: 177 KAGVWYLCARVPAAGDGTGEGDGPFRTYRIDRFLSVEDGGDRFARDEGFD 226


>UniRef50_Q7MF56 Predicted transcriptional regulator n=10 Tax=Vibrio
           RepID=Q7MF56_VIBVY
          Length = 228

 Score = 54.5 bits (130), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 30/214 (14%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY--LDLEYQSGY 63
            + +RL   L+L+ S+  A   ++ ++LA    VS RT+ RD +  L++  + ++ ++G 
Sbjct: 2   SKSERLFELLTLLRSKRYA---VTAKQLAETMEVSERTIYRDIQS-LIHSGVPIQGEAGV 57

Query: 64  CRLRTAG--SEMQMVPDVLIFAHRSGL-------AGLFPGLDR----RLVNALLMCDESP 110
             L  +G      M  +  + A   G+               R    ++++ L    +  
Sbjct: 58  GYLLQSGSHLPPLMFTEKEMMALELGMRMVRAWSDAELADASRSASIKILSVLPDKLKQQ 117

Query: 111 ----CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQ 162
                +I P     S +       L  AI    +V+L  +         ++ P       
Sbjct: 118 VEDFPLIVPEFHTHSETAKRG-QLLRHAIEHHFKVSLDYQDENGQITERKIQPLGQFFWG 176

Query: 163 QTWYLVA--EHEGHIAVFTLDEIHLIQPLQETFR 194
           + W LVA  E       F LD I  ++   E F 
Sbjct: 177 KVWTLVAWCELRQDYRQFRLDRIQALRMHDEEFE 210


>UniRef50_B8CYA6 Helix-turn-helix type 11 domain protein n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8CYA6_HALOH
          Length = 327

 Score = 54.5 bits (130), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 39/222 (17%)

Query: 13  VRLSLIISRLVAG-ETLSVRKLAAEFGVSVRTLRRDFR-------------ERLMYLDLE 58
            R+  +I+ L +G +    R LA  FGVS RT+ RD +             E+  Y    
Sbjct: 9   YRILKMINLLSSGVKRWRARDLAELFGVSPRTIYRDIQYMEQMHIPVIKDEEKNTYA--I 66

Query: 59  YQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD------RRLVNALLMC------ 106
            +  Y +      E  M    L+    +    ++P  +       +++N+L         
Sbjct: 67  MEDFYFKPPRMTREEAM---ALLLVAHAFEDEVYPYREELNNAVSKIINSLPSSVKKVLL 123

Query: 107 DESPCVIAPANPVPSPSGALSFWRLI-QAITGRRRVTLIAEG-----RRCERLAPCRLLI 160
           D    ++     V   +       +I  +I   + V +          R  ++ P ++ +
Sbjct: 124 DLEDRILFHQGAVVDMTKHRDTINIINDSIASNQSVIINYYSLSSDMLRERKVDPYKIFV 183

Query: 161 HQQTWYLVAEHEGHIAV--FTLDEIHLIQPLQETFRRNDSLC 200
               +YL+A       V  F +D I  I+   + +   D   
Sbjct: 184 QDGAYYLIAYCHLRCNVLLFRVDRIRNIKVTSDKYIIPDDFD 225


>UniRef50_UPI0001C317F2 transcriptional regulator protein-like protein n=1 Tax=Conexibacter
           woesei DSM 14684 RepID=UPI0001C317F2
          Length = 687

 Score = 54.2 bits (129), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 32/223 (14%)

Query: 7   RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRL 66
           R  RL    S++I+   AGE +   ++     +S + L+ D     +   + + +G   L
Sbjct: 376 RFARLVTLASILITAGRAGERIPAAEVCERLQISEQELQEDIGVLNV---VNFGAGSYVL 432

Query: 67  RTAGSEMQMVP-DVLIFA-HRSGLAGLFPGLDRRLVNAL-----------LMCDESPCV- 112
                E  M+  D   +    +  A L P   + LV A+           L       V 
Sbjct: 433 YAEVQEDGMIEADPEAYGDSFARPARLLPVEAKALVAAIDLIGEHIPEDSLTSVRRKVVD 492

Query: 113 -IAPANPVPS---PSGALSFWRLIQ----AITGRRRVTLIAEGRRC-----ERLAPCRLL 159
            +            +G      + +    AI   R +T+              + P  L+
Sbjct: 493 ALGHDPIREGLQIVTGGGGDADIARSVSTAIVSNRLLTIEYYKENEDVFSERTVEPYALM 552

Query: 160 IHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
             ++ WY+ A     G +  F LD +      Q  F     + 
Sbjct: 553 NGREGWYVAAYDPARGGVRHFRLDRVKRAAIEQTRFTPRAEVD 595



 Score = 39.5 bits (91), Expect = 0.098,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 130 RLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQTWYLVAE--HEGHIAVFTLDE 182
           ++  AI  R+ +       +       R+ P +LL     +YL+        I VF L  
Sbjct: 159 KIETAIFRRKTIVFDYYTMQRDDLGTRRVDPYQLLFEGGQFYLLGRAHERDAIRVFRLSR 218

Query: 183 IH 184
           I 
Sbjct: 219 IR 220


>UniRef50_A9DPV5 Transcriptional regulator, DeoR family protein n=2
           Tax=Flavobacteriales RepID=A9DPV5_9FLAO
          Length = 258

 Score = 54.2 bits (129), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 28/211 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCRLRTA 69
           RL  I++ L +   L+  +LA ++ VSVRT+ RD R+     +    +E + GY  +   
Sbjct: 30  RLISILTLLRSKRLLTATELAEKYNVSVRTIYRDIRKLEEAGVPVYTIEGR-GYSLIENY 88

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALS-- 127
                   +    A  +    +    D   VN           +   +            
Sbjct: 89  TIAPVQFTEKQANALITAEHIINQSKDASFVNDFKEALIKIKSVFKTSVQEKSEILSDKI 148

Query: 128 --------------FWRLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQTWYLV 168
                            +  AIT    V +  +          ++ PC +      W L+
Sbjct: 149 HVFNWKLEETASNALSEIQIAITNFNCVEIHYKKANDYQISIRKIEPCAMYSTDNKWILI 208

Query: 169 A--EHEGHIAVFTLDEIHLIQPLQETFRRND 197
           A       +  F +D I   + L+E F    
Sbjct: 209 AWCHLRNELRAFRVDRIQSFKILEEKFEDRK 239


>UniRef50_Q65MX4 Putative uncharacterized protein n=2 Tax=Bacillus
           RepID=Q65MX4_BACLD
          Length = 315

 Score = 54.2 bits (129), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 30/202 (14%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66
           A RL+ +I  +   +  +V +LA EFGVS RT+ RD +E       +Y +     GY  L
Sbjct: 4   AKRLNEMIMMVNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGYQVL 63

Query: 67  RTAGSEMQMVPD---VLIF---------------AHRSGLAGLFPGLDRRLVNALLMCDE 108
                      +   + IF               A  + +   F       +   +   +
Sbjct: 64  NERILPPIAFSENEAISIFFAIDALKHYISLPFDAQYASIKKKFYLNLSGDIRDAIDSMK 123

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTW 165
                    P            L++A   ++ + +  E         + P  +  +Q  W
Sbjct: 124 DRVAFYT--PYEQTDDIPVLKVLLEAAVQQKVLIIEYEANGASSKRSIQPIGIYANQGKW 181

Query: 166 YLVAE--HEGHIAVFTLDEIHL 185
           Y  A         +F  D I  
Sbjct: 182 YCPAYCFLRKDYRIFRCDRIKR 203


>UniRef50_B9DII5 Putative uncharacterized protein n=1 Tax=Staphylococcus carnosus
           subsp. carnosus TM300 RepID=B9DII5_STACT
          Length = 286

 Score = 54.2 bits (129), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 26/203 (12%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGS 71
           + R+  I +RL+ GET+    L+    VS ++++RD R      D  Y+S Y   R    
Sbjct: 4   STRVLNIFTRLLNGETVRKSDLSEFGNVSTKSIQRDVR---TINDFFYESEYWNNRNTEI 60

Query: 72  EMQMV--PDVLIFAHRSG---------LAGLFPGLDRRLVNALLMCDESPCV-------- 112
             +      +  F   +G         +  L P L   + N      ++  +        
Sbjct: 61  VYKKNGYELITNFNSLNGLALLGLMVKIKSLTPILHVDVYNLFRREIQNLRIEDRKILSE 120

Query: 113 IAPANPVPSPSGALSFWRLI-QAITGRRRVTLIAEGRRCERLAPCRLLI-HQQTWYLVAE 170
           +         +       LI QAI+ +  V +  +GR  E + P   +  H   W+   E
Sbjct: 121 MLKHFKKRDETFPGEILMLIEQAISQKSLVWMKFKGRNIE-VKPLSTMYMHYDYWF-TYE 178

Query: 171 HEGHIAVFTLDEIHLIQPLQETF 193
           +E  +    +  I   +    TF
Sbjct: 179 YEKTVYTERVRHIENFKVSNHTF 201


>UniRef50_A6VRZ4 Helix-turn-helix type 11 domain protein n=1 Tax=Marinomonas sp.
           MWYL1 RepID=A6VRZ4_MARMS
          Length = 231

 Score = 54.2 bits (129), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 25/209 (11%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG-Y 63
           RR DRL  +L  I+ R+     ++  KLA E  VS RT+ RD  + +   + +E ++G  
Sbjct: 2   RRADRL-FQLIQILRRVNR--PVTAAKLAEELEVSKRTVYRDIADLVGQRVPIEGEAGLG 58

Query: 64  CRLRT-AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES------PCVI--- 113
             L         M     + A   G+  +    D+ + N+             P  I   
Sbjct: 59  YTLSEFYNMPPLMFTQDELEALVLGVQLVQSLPDKTIGNSAKDVYAKIRDVIPPSFITTL 118

Query: 114 ----APANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165
                   P            L +AI   +++ +      E +    + P  L   +   
Sbjct: 119 SDAGVRIKPRELEPEKQDTRYLREAIRANKKIRITYSDRDENKSERVVWPIMLGYDEAYC 178

Query: 166 YLVA--EHEGHIAVFTLDEIHLIQPLQET 192
            L+A  E       F +D I  ++ L  +
Sbjct: 179 LLIAWCEQRQQYRHFRVDRIRHMERLDIS 207


>UniRef50_C1YQ17 Predicted transcriptional regulator, COG2378 n=2 Tax=Actinobacteria
           (class) RepID=C1YQ17_NOCDA
          Length = 322

 Score = 54.2 bits (129), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 31/214 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGYCRLRT 68
           R+  ++S L  G       LAA   VS R+LRRD  +RL  L      L    G+ RL  
Sbjct: 7   RMLRLLSLLQTGRAWPGADLAAALEVSPRSLRRDI-DRLRELGYAVESLRGPGGHYRLAA 65

Query: 69  AG-SEMQMVPDVLIFAHRSGLAGLFPGL----------DRRL--VNALLMCDESPCVIAP 115
                  ++ D  + A   GL  +  GL          +R L  +  +L    +    A 
Sbjct: 66  GRAVPPLLLEDDEVVAAALGLRIVAAGLGGVEGVEESAERALARLGRVLPSRLARRAKAM 125

Query: 116 ANPVPSPSG------ALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTW 165
           A  V                 L +A+     V ++  G        +  P RL++  + W
Sbjct: 126 AAAVEPEQRVWPGVRTRVLTDLGEAVADGHWVRMLHRGGDGRELRRKADPYRLVLSGRRW 185

Query: 166 YLVA--EHEGHIAVFTLDEIHLIQPLQETFRRND 197
           YL A          F LD I  + P +  F R +
Sbjct: 186 YLFAWDRERDDWRTFRLDRITGVTPTRAPFTRRE 219


>UniRef50_A9WUI5 Transcriptional regulator n=1 Tax=Renibacterium salmoninarum ATCC
           33209 RepID=A9WUI5_RENSM
          Length = 313

 Score = 54.2 bits (129), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 74/226 (32%), Gaps = 51/226 (22%)

Query: 31  RKLAAEFGVSVRTLRRDFRERLMYL--DLE---YQSGYCRLRTAGSEMQMVPD------- 78
             LA +  VS+RTLRRD  ERL  L   +E      G  +L    S   +V D       
Sbjct: 14  NDLAEKLEVSLRTLRRDV-ERLRELGYPVEARRGTDGGYQLAAGASLPPLVVDDEEAVAL 72

Query: 79  ----------VLIFAHRSGLAGL------FPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
                      +     + ++ L       P   RR V   L     P   AP   V + 
Sbjct: 73  TIGLRLAAQGAINGIEEASISALAKVIQVMPARLRRRV-EALQLATVPSGSAPGPVVDAT 131

Query: 123 SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGHIA-- 176
                   + QA     R+          +    + P RL+   Q WYLVA         
Sbjct: 132 VLTT----IAQACRDEERLDFSYTAHNGEQTERHVEPRRLVAVGQRWYLVAYDLTRHDWL 187

Query: 177 VFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
            F LD +   +   E FR              I AL    F+Q+SL
Sbjct: 188 SFRLDRLREPKNTAERFRSRK-----------IPALNAAEFVQNSL 222


>UniRef50_Q1DCK6 Putative uncharacterized protein n=2 Tax=Cystobacterineae
           RepID=Q1DCK6_MYXXD
          Length = 309

 Score = 53.8 bits (128), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 131 LIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGHI--AVFTLDEIH 184
           L +AI  R  VT              + P  LL H+  WYL           +F LD + 
Sbjct: 146 LTRAIIERLEVTFGYASPGRSPEPRTVRPYELLSHRGQWYLQGYCHTRQDARLFRLDRME 205

Query: 185 LIQPLQETFRRNDSLCRLVEDPV 207
            I     +F+        V +P 
Sbjct: 206 DILVTDVSFQPPADARADVPNPA 228


>UniRef50_Q0S1T7 Probable transcriptional regulator, DeoR family protein n=2
           Tax=Rhodococcus RepID=Q0S1T7_RHOSR
          Length = 320

 Score = 53.8 bits (128), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 68/212 (32%), Gaps = 23/212 (10%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM----YLDLEYQSGYCRL- 66
           A RL   +  + A   ++  ++A E  VSV T RRD                + G   L 
Sbjct: 3   ADRLVATLLLMQARGRVTAAEVADELDVSVATARRDLEALSAAGIPVYPQSGRGGGWSLV 62

Query: 67  --RTAGSEMQMVPDVLIFAHRSG----LAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
                        +        G    ++G      R+LV AL     +    A    + 
Sbjct: 63  GGARTDLSGLSATEAQALFLLVGPAAAVSGEAKAALRKLVRALPQTFRADAEAAATATMI 122

Query: 121 SPSGALSFWR--------LIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168
            P+      R        L  A+  RR+V LI       R    + P  L+     WYL+
Sbjct: 123 DPTRWGERDRRRPEMVDLLQAAVIRRRKVRLIYTNSARQRSERLVDPWGLVDKDDIWYLL 182

Query: 169 AEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           A  E     F +D I   +  ++   R D   
Sbjct: 183 AGTERGQRTFRVDRIVHAESTEQPGERPDDFT 214


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P52133 Uncharacterized HTH-type transcriptional regulat...   226   3e-58
UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providenc...   196   6e-49
UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providenc...   193   4e-48
UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yers...   190   2e-47
UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enter...   189   4e-47
UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteria...   185   1e-45
UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Provide...   185   1e-45
UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia c...   185   1e-45
UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Cam...   184   1e-45
UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherich...   176   4e-43
UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax...   175   1e-42
UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Provide...   173   4e-42
UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax...   173   6e-42
UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter ...   168   2e-40
UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 T...   166   4e-40
UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-tu...   166   7e-40
UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibri...   159   6e-38
UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax...   159   8e-38
UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Ta...   154   3e-36
UniRef50_C6SP18 Putative uncharacterized protein n=2 Tax=Strepto...   152   9e-36
UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobac...   151   2e-35
UniRef50_A6VRC7 Helix-turn-helix type 11 domain protein n=3 Tax=...   144   2e-33
UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibr...   144   2e-33
UniRef50_B2T6R2 Helix-turn-helix type 11 domain protein n=4 Tax=...   141   2e-32
UniRef50_B2JN46 Helix-turn-helix type 11 domain protein n=4 Tax=...   141   3e-32
UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 ...   140   4e-32
UniRef50_Q5WCJ1 Transcriptional regulator n=1 Tax=Bacillus claus...   139   5e-32
UniRef50_C0EAB2 Putative uncharacterized protein n=1 Tax=Clostri...   139   7e-32
UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp....   138   1e-31
UniRef50_B1BVT1 Transcriptional regulator, DeoR family n=3 Tax=B...   138   2e-31
UniRef50_Q65LG5 Hypothetical DNA-binding protein n=1 Tax=Bacillu...   137   2e-31
UniRef50_D1CGQ4 Helix-turn-helix type 11 domain protein n=1 Tax=...   137   3e-31
UniRef50_A9AWW0 Helix-turn-helix type 11 domain protein n=1 Tax=...   137   3e-31
UniRef50_A7GBR0 Putative uncharacterized protein n=10 Tax=Bacter...   137   4e-31
UniRef50_C6D6M2 Helix-turn-helix type 11 domain protein n=1 Tax=...   136   5e-31
UniRef50_C1IA92 Transcription regulator n=1 Tax=Clostridium sp. ...   136   6e-31
UniRef50_B2V022 DeoR-family transcriptional regulator n=5 Tax=Cl...   136   6e-31
UniRef50_C0ZCT1 Putative transcriptional regulator n=1 Tax=Brevi...   135   9e-31
UniRef50_A6P211 Putative uncharacterized protein n=5 Tax=Bacteri...   135   1e-30
UniRef50_C0CTB1 Putative uncharacterized protein n=4 Tax=Firmicu...   135   1e-30
UniRef50_B0MJK4 Putative uncharacterized protein n=1 Tax=Anaeros...   134   2e-30
UniRef50_UPI0001C37EC6 helix-turn-helix type 11 domain-containin...   134   2e-30
UniRef50_Q9RY95 Repressor protein, putative n=1 Tax=Deinococcus ...   134   2e-30
UniRef50_C9AAC3 Transcriptional regulator n=3 Tax=Enterococcus c...   134   3e-30
UniRef50_Q0AX84 YobV n=1 Tax=Syntrophomonas wolfei subsp. wolfei...   133   4e-30
UniRef50_A8S168 Putative uncharacterized protein n=1 Tax=Clostri...   133   4e-30
UniRef50_Q92EJ5 Lin0464 protein n=2 Tax=Firmicutes RepID=Q92EJ5_...   133   5e-30
UniRef50_UPI0001C425E1 hypothetical protein BpOF4_16355 n=1 Tax=...   133   5e-30
UniRef50_Q5WD79 Transcriptional regulator n=5 Tax=Bacillus RepID...   133   5e-30
UniRef50_Q9S3S5 Putative uncharacterized protein n=1 Tax=Enteroc...   133   5e-30
UniRef50_C6PMV9 Helix-turn-helix type 11 domain protein n=1 Tax=...   132   7e-30
UniRef50_B1CBH7 Putative uncharacterized protein n=1 Tax=Anaerof...   132   7e-30
UniRef50_A9KRE5 Helix-turn-helix type 11 domain protein n=1 Tax=...   132   9e-30
UniRef50_C4DT59 Predicted transcriptional regulator, COG2378 n=1...   132   1e-29
UniRef50_C6CXH2 Helix-turn-helix type 11 domain protein n=2 Tax=...   132   1e-29
UniRef50_A6F2P0 Transcriptional regulator, DeoR family protein n...   132   1e-29
UniRef50_A7VYA2 Putative uncharacterized protein n=1 Tax=Clostri...   131   1e-29
UniRef50_B8FW42 Helix-turn-helix type 11 domain protein n=3 Tax=...   131   1e-29
UniRef50_C7NAI6 Helix-turn-helix type 11 domain protein n=3 Tax=...   131   2e-29
UniRef50_Q8F269 Transcription regulator n=2 Tax=Leptospira inter...   131   2e-29
UniRef50_B1HUW4 YobV n=2 Tax=Bacillaceae RepID=B1HUW4_LYSSC           131   2e-29
UniRef50_B9YCC8 Putative uncharacterized protein n=1 Tax=Holdema...   131   2e-29
UniRef50_D1PN27 Transcriptional regulator, DeoR family n=3 Tax=C...   131   3e-29
UniRef50_B0N590 Putative uncharacterized protein n=2 Tax=Bacteri...   130   3e-29
UniRef50_C9XKH2 DeoR-family transcriptional regulator n=4 Tax=Cl...   130   3e-29
UniRef50_B0MGX9 Putative uncharacterized protein n=2 Tax=Clostri...   130   5e-29
UniRef50_A4FF91 DeoR-family transcriptional regulator n=17 Tax=B...   129   5e-29
UniRef50_UPI0001789548 Helix-turn-helix type 11 domain protein n...   129   6e-29
UniRef50_Q73PY5 Transcriptional regulator, putative n=1 Tax=Trep...   129   6e-29
UniRef50_C4FVK8 Putative uncharacterized protein n=2 Tax=Catonel...   129   7e-29
UniRef50_B8FUA6 Helix-turn-helix type 11 domain protein n=3 Tax=...   129   7e-29
UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Provide...   129   8e-29
UniRef50_A4XCA7 Helix-turn-helix, type 11 domain protein n=7 Tax...   129   1e-28
UniRef50_C6D7L1 Helix-turn-helix type 11 domain protein n=1 Tax=...   128   1e-28
UniRef50_A3CLQ0 Transcriptional regulator, putative n=3 Tax=Stre...   128   2e-28
UniRef50_C6CRF1 Helix-turn-helix type 11 domain protein n=1 Tax=...   128   2e-28
UniRef50_C9NKS1 Helix-turn-helix type 11 domain protein n=5 Tax=...   128   2e-28
UniRef50_C5EHW4 Helix-turn-helix type 11 domain-containing prote...   128   2e-28
UniRef50_D0MGR2 Helix-turn-helix type 11 domain protein n=1 Tax=...   127   2e-28
UniRef50_A6LYP1 Helix-turn-helix, type 11 domain protein n=1 Tax...   127   2e-28
UniRef50_B3PHR5 Predicted transcriptional regulator n=1 Tax=Cell...   127   3e-28
UniRef50_D2PM08 Helix-turn-helix type 11 domain protein n=2 Tax=...   127   3e-28
UniRef50_C3L2F0 Transcription regulator n=4 Tax=Clostridium RepI...   127   4e-28
UniRef50_A8MEN8 Helix-turn-helix type 11 domain protein n=14 Tax...   127   4e-28
UniRef50_A9AUR2 Helix-turn-helix type 11 domain protein n=1 Tax=...   126   5e-28
UniRef50_UPI0001789485 Helix-turn-helix type 11 domain protein n...   126   5e-28
UniRef50_C2U625 Helix-turn-helix type 11 domain protein n=2 Tax=...   126   7e-28
UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 T...   126   8e-28
UniRef50_D2BDS4 DeoR family transcriptional regulator n=2 Tax=Ac...   126   8e-28
UniRef50_C6PV47 Helix-turn-helix type 11 domain protein n=2 Tax=...   126   9e-28
UniRef50_D2QLY3 Helix-turn-helix type 11 domain protein n=1 Tax=...   125   1e-27
UniRef50_A4W669 Regulatory protein, DeoR n=3 Tax=Enterobacteriac...   125   1e-27
UniRef50_D2QV53 Helix-turn-helix type 11 domain protein n=1 Tax=...   125   1e-27
UniRef50_C5REL4 Helix-turn-helix type 11 domain protein n=1 Tax=...   125   1e-27
UniRef50_UPI0001BC5E8A helix-turn-helix, type 11 domain-containi...   124   2e-27
UniRef50_B8DCU5 HTH domain family n=6 Tax=Listeria monocytogenes...   124   3e-27
UniRef50_Q73PA8 Transcriptional regulator, putative n=2 Tax=Bact...   124   3e-27
UniRef50_B2A042 Helix-turn-helix type 11 domain protein n=1 Tax=...   124   3e-27
UniRef50_C5BNS8 HTH domain protein n=2 Tax=Gammaproteobacteria R...   123   4e-27
UniRef50_B1C6Z1 Putative uncharacterized protein n=1 Tax=Anaerof...   123   4e-27
UniRef50_A9KM28 Helix-turn-helix type 11 domain protein n=2 Tax=...   123   5e-27
UniRef50_Q7MF56 Predicted transcriptional regulator n=10 Tax=Vib...   123   5e-27
UniRef50_B4D3V6 Helix-turn-helix type 11 domain protein n=1 Tax=...   123   6e-27
UniRef50_A4C3H1 Predicted transcriptional regulator n=2 Tax=Gamm...   123   6e-27
UniRef50_A0AFG8 Complete genome n=16 Tax=Listeria RepID=A0AFG8_L...   122   7e-27
UniRef50_B7HZL2 HTH domain family n=31 Tax=Bacillus RepID=B7HZL2...   122   8e-27
UniRef50_B5HKG2 Truncated DeoR-family transcriptional regulator ...   122   8e-27
UniRef50_Q7X2G0 Putative repressor n=3 Tax=Streptomyces RepID=Q7...   122   9e-27
UniRef50_Q0S1T7 Probable transcriptional regulator, DeoR family ...   122   9e-27
UniRef50_B1C2N9 Putative uncharacterized protein n=1 Tax=Clostri...   122   1e-26
UniRef50_Q11X99 Transcriptional regulator, DeoR family n=2 Tax=S...   122   1e-26
UniRef50_Q0S564 Possible transcriptional regulator n=4 Tax=Rhodo...   122   1e-26
UniRef50_A4J6Q1 Transcriptional regulator-like protein n=2 Tax=P...   122   1e-26
UniRef50_A4BKA3 Predicted transcriptional regulator n=1 Tax=Rein...   122   1e-26
UniRef50_C4RGC2 Putative uncharacterized protein n=1 Tax=Micromo...   122   1e-26
UniRef50_C5BZX6 Helix-turn-helix type 11 domain protein n=2 Tax=...   121   1e-26
UniRef50_A8LFK5 Helix-turn-helix type 11 domain protein n=5 Tax=...   121   1e-26
UniRef50_A5I226 DeoR-family transcriptional regulator n=13 Tax=C...   121   1e-26
UniRef50_Q12H80 Helix-turn-helix, type 11 n=7 Tax=Proteobacteria...   121   2e-26
UniRef50_B6R343 Helix-turn-helix, type 11 domain protein n=1 Tax...   121   2e-26
UniRef50_C5BVH8 Helix-turn-helix type 11 domain protein n=1 Tax=...   121   2e-26
UniRef50_C0C4Y8 Putative uncharacterized protein n=1 Tax=Clostri...   121   2e-26
UniRef50_A1SPT5 Helix-turn-helix, type 11 domain protein n=2 Tax...   121   2e-26
UniRef50_A0QS56 DeoR-family protein transcriptional regulator n=...   121   2e-26
UniRef50_D0RTY4 DeoR-family transcriptional regulator n=3 Tax=St...   121   2e-26
UniRef50_C0ZJQ9 Putative transcriptional regulator n=1 Tax=Brevi...   121   2e-26
UniRef50_A8FE45 Possible transcriptional regulator n=2 Tax=Bacil...   121   2e-26
UniRef50_C1CY87 Putative transcriptional regulator n=1 Tax=Deino...   121   2e-26
UniRef50_C6D1B9 Helix-turn-helix type 11 domain protein n=1 Tax=...   121   3e-26
UniRef50_C6J3L6 Putative uncharacterized protein n=1 Tax=Paeniba...   121   3e-26
UniRef50_Q65L70 Hypothetical DNA-binding protein n=1 Tax=Bacillu...   121   3e-26
UniRef50_B4UYC1 Helix-turn-helix type 11 domain containing prote...   120   3e-26
UniRef50_C0Z5Y8 Putative transcriptional regulator n=1 Tax=Brevi...   120   4e-26
UniRef50_D1ARJ4 Helix-turn-helix type 11 domain protein n=1 Tax=...   120   4e-26
UniRef50_A6WLL6 Helix-turn-helix type 11 domain protein n=16 Tax...   119   6e-26
UniRef50_O34920 Uncharacterized HTH-type transcriptional regulat...   119   7e-26
UniRef50_D2Q2S8 Helix-turn-helix type 11 domain protein n=2 Tax=...   119   8e-26
UniRef50_D2B3I6 Helix-turn-helix, type 11 n=2 Tax=Actinomycetale...   118   1e-25
UniRef50_A3CLM4 Putative uncharacterized protein n=2 Tax=Strepto...   118   1e-25
UniRef50_B5GB15 DeoR-family protein transcriptional regulator n=...   118   2e-25
UniRef50_C9YTR3 Putative transcriptional regulator n=8 Tax=Strep...   118   2e-25
UniRef50_D1CH46 Helix-turn-helix type 11 domain protein n=1 Tax=...   118   2e-25
UniRef50_C0CXX2 Putative uncharacterized protein n=1 Tax=Clostri...   118   2e-25
UniRef50_D2B9H3 DeoR family transcriptional regulator n=3 Tax=Ac...   118   2e-25
UniRef50_C8WKG8 Helix-turn-helix type 11 domain protein n=1 Tax=...   118   2e-25
UniRef50_C7PP77 Helix-turn-helix type 11 domain protein n=3 Tax=...   118   2e-25
UniRef50_C0ZIU8 Putative uncharacterized protein n=2 Tax=Bacilla...   118   2e-25
UniRef50_C7Q8N4 Helix-turn-helix type 11 domain protein n=12 Tax...   117   2e-25
UniRef50_D2Q3M3 Helix-turn-helix type 11 domain protein n=1 Tax=...   117   2e-25
UniRef50_C2G2T1 Helix-turn-helix, type 11 domain protein n=2 Tax...   117   2e-25
UniRef50_A9B2R1 Helix-turn-helix type 11 domain protein n=2 Tax=...   117   2e-25
UniRef50_UPI00017450F0 Helix-turn-helix, type 11 domain protein ...   117   3e-25
UniRef50_C6CS13 Helix-turn-helix type 11 domain protein n=3 Tax=...   117   3e-25
UniRef50_D1AKN4 Helix-turn-helix type 11 domain protein n=1 Tax=...   117   3e-25
UniRef50_B9MAM8 Helix-turn-helix type 11 domain protein n=4 Tax=...   117   3e-25
UniRef50_UPI0001788164 Helix-turn-helix type 11 domain protein n...   117   3e-25
UniRef50_A4SMQ7 Transriptional regulator, DeoR family n=3 Tax=Ga...   117   4e-25
UniRef50_C2C3S2 Transcriptional regulator n=1 Tax=Listeria grayi...   117   4e-25
UniRef50_A3I1Q3 Putative deoR-family transcriptional regulator n...   117   4e-25
UniRef50_Q163T5 Transcriptional regulator, putative n=15 Tax=Rho...   116   5e-25
UniRef50_A9DPV5 Transcriptional regulator, DeoR family protein n...   116   5e-25
UniRef50_UPI0001B58C22 helix-turn-helix type 11 domain-containin...   116   6e-25
UniRef50_Q2SQG3 Predicted transcriptional regulator n=2 Tax=Gamm...   116   6e-25
UniRef50_D2BDR8 Helix-turn-helix type 11 domain protein n=9 Tax=...   116   7e-25
UniRef50_D1C7G1 Helix-turn-helix type 11 domain protein n=1 Tax=...   116   9e-25
UniRef50_A7HP98 Helix-turn-helix type 11 domain protein n=3 Tax=...   116   9e-25
UniRef50_C3JIV6 DeoR-family transcriptional regulator n=2 Tax=Rh...   115   1e-24
UniRef50_Q81CS6 Transcriptional regulator, DeoR family n=51 Tax=...   115   1e-24
UniRef50_UPI0001788CE6 Helix-turn-helix type 11 domain protein n...   115   1e-24
UniRef50_C6J5X9 Transcriptional regulator n=1 Tax=Paenibacillus ...   115   2e-24
UniRef50_A9AVG2 Helix-turn-helix type 11 domain protein n=1 Tax=...   114   2e-24
UniRef50_Q15PY3 Helix-turn-helix, type 11 n=1 Tax=Pseudoalteromo...   114   2e-24
UniRef50_C1XZ61 Predicted transcriptional regulator, COG2378 n=2...   114   2e-24
UniRef50_D0L3I9 Helix-turn-helix type 11 domain protein n=1 Tax=...   114   2e-24
UniRef50_UPI0001C3233A Helix-turn-helix type 11 domain protein n...   114   2e-24
UniRef50_C9RCX8 Transcriptional regulator-like protein n=1 Tax=A...   114   2e-24
UniRef50_A5FLV0 Helix-turn-helix, type 11 domain protein n=3 Tax...   114   3e-24
UniRef50_UPI000050FDF4 DeoR family transcriptional regulator n=1...   114   4e-24
UniRef50_B9KCA9 Putative uncharacterized protein n=1 Tax=Campylo...   113   4e-24
UniRef50_C7NJB0 Predicted transcriptional regulator n=1 Tax=Kyto...   113   4e-24
UniRef50_B2UBT2 Helix-turn-helix type 11 domain protein n=43 Tax...   113   5e-24
UniRef50_C0ZA21 Putative transcriptional regulator n=1 Tax=Brevi...   113   6e-24
UniRef50_C7PEN6 Helix-turn-helix type 11 domain protein n=1 Tax=...   112   8e-24
UniRef50_Q0RND8 Putative deoR-family transcriptional regulator n...   112   9e-24
UniRef50_A9KIF8 Helix-turn-helix type 11 domain protein n=1 Tax=...   112   1e-23
UniRef50_D1A246 Helix-turn-helix type 11 domain protein n=3 Tax=...   112   1e-23
UniRef50_C9LWR7 HTH domain protein n=1 Tax=Selenomonas sputigena...   112   1e-23
UniRef50_C9MZ16 HTH domain protein n=1 Tax=Leptotrichia hofstadi...   112   1e-23
UniRef50_B1HQ46 Putative uncharacterized protein n=2 Tax=Bacilla...   112   1e-23
UniRef50_A9E8Y8 Helix-turn-helix, type 11 n=1 Tax=Oceanibulbus i...   112   1e-23
UniRef50_Q2LTY7 Predicted transcriptional regulator, DeoR family...   111   1e-23
UniRef50_Q65MX4 Putative uncharacterized protein n=2 Tax=Bacillu...   111   1e-23
UniRef50_Q11UB6 Transcriptional regulator, DeoR family n=7 Tax=B...   111   2e-23
UniRef50_Q1GC92 Helix-turn-helix type 11 n=19 Tax=Alphaproteobac...   111   2e-23
UniRef50_D1B1H8 Putative uncharacterized protein n=1 Tax=Sulfuro...   111   2e-23
UniRef50_B1QLR3 HTH domain protein n=9 Tax=Clostridium RepID=B1Q...   110   3e-23
UniRef50_D1C4L3 Helix-turn-helix type 11 domain protein n=1 Tax=...   110   4e-23
UniRef50_B1I4N6 Regulatory protein, DeoR n=1 Tax=Candidatus Desu...   110   4e-23
UniRef50_UPI0001B4CEC8 DeoR family transcriptional regulator n=1...   109   6e-23
UniRef50_Q0AKB6 Helix-turn-helix, type 11 domain protein n=1 Tax...   109   7e-23
UniRef50_C8X624 Helix-turn-helix type 11 domain protein n=1 Tax=...   109   7e-23
UniRef50_C4DCR3 Predicted transcriptional regulator, COG2378 n=1...   109   7e-23
UniRef50_B8CYA6 Helix-turn-helix type 11 domain protein n=1 Tax=...   109   8e-23
UniRef50_C1YQ17 Predicted transcriptional regulator, COG2378 n=2...   109   8e-23
UniRef50_Q2YYI6 Probable transcriptional regulator n=1 Tax=Staph...   109   1e-22
UniRef50_C6W4A4 Helix-turn-helix type 11 domain protein n=1 Tax=...   109   1e-22
UniRef50_A3YDU1 Transcriptional regulator, (DeoR-family protein)...   108   1e-22
UniRef50_A0R9T5 Transcriptional regulator, DeoR family n=74 Tax=...   108   1e-22
UniRef50_Q1JX03 Helix-turn-helix, type 11 n=1 Tax=Desulfuromonas...   107   2e-22
UniRef50_C1SHC7 Putative uncharacterized protein n=1 Tax=Denitro...   107   2e-22
UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Provide...   107   4e-22
UniRef50_D2PY48 Helix-turn-helix type 11 domain protein n=6 Tax=...   105   8e-22
UniRef50_C2ZF99 Putative uncharacterized protein n=4 Tax=Bacillu...   105   8e-22
UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibr...   105   9e-22
UniRef50_B3QT91 Putative uncharacterized protein n=1 Tax=Chloroh...   105   1e-21
UniRef50_A6WF08 Helix-turn-helix type 11 domain protein n=1 Tax=...   105   1e-21
UniRef50_C8QWX3 Transcriptional regulator-like protein n=1 Tax=D...   105   2e-21
UniRef50_B7HA30 Hypothetical DNA-binding protein n=2 Tax=Bacillu...   105   2e-21
UniRef50_A8W027 Regulatory protein GntR, HTH n=1 Tax=Bacillus se...   104   2e-21
UniRef50_B2SX79 Helix-turn-helix type 11 domain protein n=41 Tax...   104   2e-21
UniRef50_Q3JYW1 Putative uncharacterized protein n=2 Tax=Strepto...   104   2e-21
UniRef50_A9WUI5 Transcriptional regulator n=1 Tax=Renibacterium ...   104   2e-21
UniRef50_C8XGJ6 Helix-turn-helix type 11 domain protein n=1 Tax=...   104   2e-21
UniRef50_UPI000051035F putative DeoR family transcriptional regu...   104   3e-21
UniRef50_A7GU32 Helix-turn-helix type 11 domain protein n=2 Tax=...   104   3e-21
UniRef50_D0MJ72 Helix-turn-helix type 11 domain protein n=1 Tax=...   104   3e-21
UniRef50_D1BRS2 Helix-turn-helix type 11 domain protein n=2 Tax=...   104   3e-21
UniRef50_B2A7V3 Helix-turn-helix type 11 domain protein n=1 Tax=...   104   3e-21
UniRef50_Q82JJ5 Putative DeoR-family transcriptional regulator n...   104   4e-21

Sequences not found previously or not previously below threshold:

UniRef50_A4TX58 Transcriptional regulator n=2 Tax=Proteobacteria...   129   1e-28
UniRef50_Q28UL6 Helix-turn-helix type 11 n=46 Tax=Alphaproteobac...   119   7e-26
UniRef50_B5JRI7 HTH domain family n=3 Tax=Verrucomicrobiae bacte...   117   2e-25
UniRef50_B4X1Q6 HTH domain family n=1 Tax=Alcanivorax sp. DG881 ...   117   3e-25
UniRef50_A8MKC4 Helix-turn-helix type 11 domain protein n=1 Tax=...   117   3e-25
UniRef50_A8LGU9 Helix-turn-helix type 11 domain protein n=5 Tax=...   116   7e-25
UniRef50_A1T989 Helix-turn-helix, type 11 domain protein n=6 Tax...   115   2e-24
UniRef50_Q39LZ1 Transcriptional regulator-like protein n=1 Tax=B...   114   2e-24
UniRef50_Q1GFN4 Helix-turn-helix type 11 n=8 Tax=Rhodobacteracea...   113   4e-24
UniRef50_C4RL45 DeoR-family transcriptional regulator n=1 Tax=Mi...   113   6e-24
UniRef50_Q0REC1 Putative DeoR family transcriptional regulator n...   112   7e-24
UniRef50_A6GCU0 Putative transcriptional regulator n=1 Tax=Plesi...   111   1e-23
UniRef50_D2AWK7 DeoR family transcriptional regulator n=36 Tax=A...   109   1e-22
UniRef50_Q222Z2 Helix-turn-helix, type 11 n=3 Tax=Proteobacteria...   108   2e-22
UniRef50_C0YNW3 Transcriptional regulator, DeoR family protein n...   107   2e-22
UniRef50_Q6ZEN3 Sll5097 protein n=5 Tax=Chroococcales RepID=Q6ZE...   106   7e-22
UniRef50_D0LB20 Helix-turn-helix type 11 domain protein n=5 Tax=...   105   9e-22
UniRef50_A2U2S8 Transcriptional regulator n=1 Tax=Polaribacter s...   105   1e-21
UniRef50_Q1IHV4 Transcriptional regulator, DeoR family n=1 Tax=C...   104   2e-21
UniRef50_A0NPP9 Transcriptional regulator, (DeoR-family) protein...   104   4e-21
UniRef50_B6R9W7 Transcriptional regulator n=1 Tax=Pseudovibrio s...   104   4e-21

>UniRef50_P52133 Uncharacterized HTH-type transcriptional regulator yfjR n=15
           Tax=Enterobacteriaceae RepID=YFJR_ECOLI
          Length = 233

 Score =  226 bits (577), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ
Sbjct: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
           SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP
Sbjct: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180
           SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL
Sbjct: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL 180

Query: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233
           DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE
Sbjct: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE 233


>UniRef50_UPI000197BF5E regulatory protein DeoR n=1 Tax=Providencia rettgeri DSM 1131
           RepID=UPI000197BF5E
          Length = 441

 Score =  196 bits (498), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M + E R+DRLA+RL++++SRL  GE+L++ +LA EFGVS RT++RD RERL YLD EY 
Sbjct: 217 MPKQEHRYDRLAIRLAILVSRLFMGESLNISQLAQEFGVSGRTVQRDLRERLRYLDTEYI 276

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119
            G+  LR A    +   D+L FA  + +A  FP LD +L++ LL   + SPC+I    P 
Sbjct: 277 DGHVSLRDARGPFRTNSDILRFAQITSVAHYFPVLDPKLLSVLLDNRQDSPCIIWNDPPR 336

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            +P     F  ++Q+I   R +  +        +AP RL+ H   WYL A  +  I VFT
Sbjct: 337 QAPELFGGFQVIVQSIIRNRLIRFLHRKHLQSSIAPYRLICHDGEWYLAAVSKDRIQVFT 396

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           L  I  +     +F RN  + R+++DP F++ALPHF +I   +
Sbjct: 397 LSAITDVVMTASSFARNRHIDRILQDPRFMRALPHFDYISGII 439


>UniRef50_UPI0001C349A5 regulatory protein DeoR n=2 Tax=Providencia rettgeri DSM 1131
           RepID=UPI0001C349A5
          Length = 225

 Score =  193 bits (490), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+ +  RHDRLA RL+ IIS+L  GET+ +  L+ E  VS RTLRRDF ERL YLDLEY 
Sbjct: 1   MSTSVSRHDRLASRLAFIISQLFRGETVYLSALSEELNVSTRTLRRDFNERLQYLDLEYH 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM-CDESPCVIAPANPV 119
            G  RL  +    +   D+L FA  + +  LFP LDR+L+  LL    +SP ++    P 
Sbjct: 61  QGGYRLAASQRPFRTDKDILRFAAITHITSLFPALDRKLLTVLLDPTIDSPFIVYHTPPE 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
             PS    F+ L QAI  RR +    +G+    +AP +L+ +   WYL A+   HI VF 
Sbjct: 121 QRPSLFGGFYILTQAIVKRRLLQFAHQGKNITNVAPYKLIYYHGHWYLAADIAQHIHVFD 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           +  +  +      FR  + L + + +  FIQALPH+++IQ  +
Sbjct: 181 VMALQDVVMTARGFRYREDLNQRLCEEAFIQALPHYQYIQSLV 223


>UniRef50_C4SV45 Predicted transcriptional regulator n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SV45_YERFR
          Length = 229

 Score =  190 bits (483), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 90/223 (40%), Positives = 126/223 (56%), Gaps = 1/223 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M++    +DRLAVRL+LII RL  GE LS+  LA+EF VS RTLRRDF +RL+YLDLE  
Sbjct: 1   MSEVSMHYDRLAVRLALIIGRLFMGEGLSINALASEFNVSPRTLRRDFNQRLIYLDLEQV 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119
            G  RL  +    +   D++ FA  + +A  FP LD +L++ LL  +  SP V+  A P 
Sbjct: 61  DGIYRLAKSHIGSRTDGDIIHFARVTHMAQFFPALDSKLLSVLLNKNVGSPYVVYHAPPK 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
             P+    F+R+ QAI     V L  +G     LAP RL+     WYLV EH   + VF 
Sbjct: 121 NPPALFGGFYRITQAIIDNVFVELSVQGNEYFNLAPYRLVYFDGYWYLVGEHNLTLQVFL 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           L  I  +      F + + +  L  +  FI+ALPHF+F+++ +
Sbjct: 181 LIHITDVTLTPRRFTKKEYITALTAEADFIKALPHFQFVRNLV 223


>UniRef50_C2LK81 Possible transcriptional regulator n=4 Tax=Enterobacteriaceae
           RepID=C2LK81_PROMI
          Length = 235

 Score =  189 bits (481), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 93/229 (40%), Positives = 133/229 (58%), Gaps = 2/229 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M Q  R++DR+AVRLS +I+RL+AGE+L +  LA EF VS RTL+RD RERL YL +E +
Sbjct: 1   MFQTNRKYDRMAVRLSALIARLMAGESLVLSCLAQEFNVSERTLQRDLRERLAYLGVEGR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-RRLVNALLMCDESPCVIAPANPV 119
            G  RL     +     DVL F  + G+  LFPGLD R L   L     +PC+I      
Sbjct: 61  QGCYRLPINTLKAYRDKDVLTFVKQIGMTRLFPGLDSRLLGLLLTQQPHAPCLIWHHAHK 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            S   A  F++L+ AIT ++ ++L+   RR   L P +L+  +  WYL+AE+   + V  
Sbjct: 121 ISALHADHFYQLVYAITSKQSISLLTPERRFNPLQPYQLIYREGQWYLLAEYYQQVHVLL 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228
           L++I  +QPL   F    ++ +L +   FI ALPHFR I   +LT +P+
Sbjct: 181 LEDIQQVQPLNTPFTPKHAVMQLSQQNSFIAALPHFRLISQ-VLTSLPS 228


>UniRef50_B1IPS8 Transcriptional regulator n=9 Tax=Enterobacteriaceae
           RepID=B1IPS8_ECOLC
          Length = 237

 Score =  185 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/223 (52%), Positives = 146/223 (65%), Gaps = 1/223 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+QAERR+DRL+VRLSLIISRL+AGETL++RKLAAEFGVS RTL RDFRERL+YLDLEYQ
Sbjct: 1   MSQAERRYDRLSVRLSLIISRLLAGETLNMRKLAAEFGVSERTLHRDFRERLIYLDLEYQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC-DESPCVIAPANPV 119
            G CRL T G +       + FA +SG   LFP +D  LVN+LL   D SPC+I      
Sbjct: 61  DGCCRLLTGGRQEIREEAAMQFARQSGTGALFPDMDHHLVNSLLSSKDSSPCLIWHPGAS 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            + S    F RL++A++  R+VTL+A+G RC+ LAP RL+     W+LV EH   I VF 
Sbjct: 121 VTSSRPGIFTRLVRAVSENRKVTLLADGCRCDNLAPYRLIFSTGGWFLVGEHLARITVFA 180

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           L  +H +    ETF  +    R++  P F+QALPHF      L
Sbjct: 181 LHTVHSVTFHAETFTPDGHFTRILSHPDFLQALPHFHVFHSLL 223


>UniRef50_B2PWJ3 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PWJ3_PROST
          Length = 231

 Score =  185 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 96/225 (42%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M + + RHDRLA+RLSLIISRL+AGETLS+R LA EFGVS RT++RD  ERL +LDL   
Sbjct: 1   MKKQDTRHDRLAMRLSLIISRLLAGETLSLRALANEFGVSERTIQRDLHERLSHLDLVSN 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD-ESPCV-IAPANP 118
                L +    +   PD+  F  + GLA  FPGL R+ VN L+  D   PC  ++P   
Sbjct: 61  EAGYCLSS-TLTVWRTPDLFSFLQKVGLASYFPGLTRKTVNHLVQSDLHFPCFMLSPFET 119

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
             S      F++LIQAIT    V +  +      L P RL ++++ WYL+     ++ V 
Sbjct: 120 EFSSCDGECFYQLIQAITQHFIVQVKQKEGIYLHLEPYRLALYERAWYLIGYASPYVRVI 179

Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
            L  I  +   +  FRR   +CRL   P FI ALPHF FIQH + 
Sbjct: 180 PLHHIQSVHITEIPFRRRKEICRLSSTPEFISALPHFEFIQHVIN 224


>UniRef50_Q4FBD3 Transcriptional regulator n=18 Tax=Escherichia coli
           RepID=Q4FBD3_ECOLX
          Length = 226

 Score =  185 bits (469), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 96/226 (42%), Positives = 135/226 (59%), Gaps = 3/226 (1%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M+    RHDRLAVRLSLIISRL+ GE+LS++ L+ EFGV+ RTL+RDF +RL++LDLEY+
Sbjct: 1   MSDNRSRHDRLAVRLSLIISRLMTGESLSLKTLSDEFGVTERTLQRDFHQRLVHLDLEYR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE-SPCVIAPANPV 119
           +G   LR   S    +P++L F   +G+A + P  + RL+  L    E SPC+I    P 
Sbjct: 61  NGRYSLRRQSSP-GAIPEMLSFIQNTGIARILPLRNGRLITCLTDNQEPSPCLIWLPAPD 119

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
            + +    F +LI AI     ++L+A  R    L PCRL+ +  +WYL+A  +G + VF 
Sbjct: 120 ITATFPECFSQLILAIRQCIHISLMA-ERWYPSLEPCRLIYYSGSWYLIALQKGKLQVFP 178

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
           L +I  +    E F R   +  LV +  FI ALPHF FI   + TF
Sbjct: 179 LADIKSVSLTSERFERRGHIHNLVAEERFISALPHFSFIHKLINTF 224


>UniRef50_Q5HVJ9 Transcriptional regulator, putative n=11 Tax=Campylobacter
           RepID=Q5HVJ9_CAMJR
          Length = 290

 Score =  184 bits (468), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 2/217 (0%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64
            + +D+L++RL  I+S+   GE+LS ++LA EF V  RT++RD  ERL ++ ++ ++G  
Sbjct: 1   MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDLNERLTFMPIKKENGRY 60

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
            L +         D+  FA  SG+A L+P LD+  +  LL    +  ++           
Sbjct: 61  VLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSHRVNKVLMVKNEGFQK-VD 119

Query: 125 ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIH 184
              F  L  AI     +    + ++  ++ P +L+ ++  WYL+ +    +  F LD+I 
Sbjct: 120 YELFKDLSVAILKHNVLNFFYK-KKERQIKPYKLVNYKGIWYLLGDENDKLKHFNLDKIS 178

Query: 185 LIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS 221
            ++   E F  N+ L   +++   I        I   
Sbjct: 179 KLRTKNENFIPNEKLQEQIQNDPNIWLGESKEVILKL 215


>UniRef50_C2DJQ1 Transcriptional regulator YfjR n=1 Tax=Escherichia coli 83972
           RepID=C2DJQ1_ECOLX
          Length = 238

 Score =  176 bits (447), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 2/226 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M      HDRL+VRLS+IISRL+AGE+L ++ LA EFGVS RTL+RDF++RL++LDLE++
Sbjct: 12  MKTQHDHHDRLSVRLSVIISRLLAGESLELKVLADEFGVSERTLQRDFQQRLIHLDLEHR 71

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL-LMCDESPCVIAPANPV 119
           SG  RL       + +P+   F   SG++G+ P  +R+L+  +      SPC+I      
Sbjct: 72  SGSYRLIRQT-GREHLPNTFAFIRNSGISGIIPAQNRKLIRLIASNSGVSPCLIGHGALS 130

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
              +    F +L +AI   R VTL+  G+  E +AP RL+   + W+LVA    ++ VF 
Sbjct: 131 SPVTQTACFLKLAEAIRDYRAVTLLVNGKSYEAVAPRRLIFQSKNWFLVATRTRNLQVFR 190

Query: 180 LDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
           +++++ +  L  +FRR   L  L     FI ALPHFRFI   + TF
Sbjct: 191 MEDVNAVTVLDTSFRRKPELDALTASEEFISALPHFRFISDVIQTF 236


>UniRef50_C5SZH4 Helix-turn-helix, type 11 domain protein n=1 Tax=Acidovorax
           delafieldii 2AN RepID=C5SZH4_ACIDE
          Length = 306

 Score =  175 bits (443), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 7/217 (3%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M       D +A RL+ I+ RL  GE L    L  EFGV++RT++RD  +R  +LDL  +
Sbjct: 1   MPTPSDPRDTIAYRLTEILRRLNEGEALDPHALVEEFGVNLRTIQRDLNQRFAFLDLVKK 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
            G   +  +      + DV  FA  +GL GL P L    +  +L       ++   +   
Sbjct: 61  DGRYTIDRSRLGTLTLHDVQRFASLAGLQGLHPRLSTGFLRDILDTRLQSALLIRGHNYE 120

Query: 121 SPSGAL-SFWRLIQAITGRRRVTLIAEG------RRCERLAPCRLLIHQQTWYLVAEHEG 173
                   F +L QA    R V+           +  + + P +L+     WYL A   G
Sbjct: 121 DLHNKESEFNQLKQAAQQHRVVSFEYRKPDSTAAKLVDDIRPYKLVNQDGIWYLAATDAG 180

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210
               + +  I  +  L +TF  + ++ + + +   + 
Sbjct: 181 KPKSYAVSRIERLLVLADTFTPDPAVLQQIANEDSVW 217


>UniRef50_B2PW39 Putative uncharacterized protein n=5 Tax=Providencia
           RepID=B2PW39_PROST
          Length = 229

 Score =  173 bits (439), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M Q   RHDRL  RL+ I++ L  GETLS R LAAEF VS+RT++RDF ERL+YLD+E Q
Sbjct: 1   MAQPSPRHDRLVHRLAYILTHLFKGETLSPRVLAAEFNVSLRTIQRDFHERLVYLDIEQQ 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM--CDESPCVIAPANP 118
               RL    S ++   D+L FA  + +  LFP LDR+L++ LL      SP V+  A P
Sbjct: 61  EEGYRLAGGQSALRTDSDILQFAQITDITPLFPVLDRKLLSLLLSRHAQGSPYVVYHAPP 120

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
              PS    F  + QAI   + +     G+    +AP +L      WY+     G I   
Sbjct: 121 KALPSVYGGFALITQAILDNQFIHYEIGGKTTHWVAPYKLTYFNGHWYVCGVMNGLIHAV 180

Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
            L  +  +      F+ + +L + + +  FIQALPHF++I+  L
Sbjct: 181 ELLHLRDVGLSARHFKPDTALLQRMTERAFIQALPHFQYIKGIL 224


>UniRef50_A1VQX0 Helix-turn-helix, type 11 domain protein n=2 Tax=Proteobacteria
           RepID=A1VQX0_POLNA
          Length = 301

 Score =  173 bits (437), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 93/212 (43%), Gaps = 5/212 (2%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGY 63
               HD L  RL+LI+ +L  GE L  + LA EF V++RT++RD  ER  YL LE   G 
Sbjct: 5   TAAHHDTLVYRLALILVKLNQGEKLDPQALADEFSVNLRTIQRDLNERFAYLPLEKTDGL 64

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123
             L           DV  FA  +G+ GLFP L    +  +        ++   +     +
Sbjct: 65  YHLHPTFLGKLSTRDVERFASLAGVRGLFPSLSDDFLRDIFDTGIQASLLVKGHNYEHLA 124

Query: 124 GAL-SFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVF 178
           G   +F +L QAI  RR +          +    + P +L+ H+  WYL A+  G +  F
Sbjct: 125 GKEANFRQLEQAIVTRRSIAFEYRKDEGIKLYADVEPYKLMNHKGIWYLAAKDGGKLKTF 184

Query: 179 TLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210
           +   I  +  L   F  + S+ + + +   I 
Sbjct: 185 SFARIERLVLLNAIFLPDPSVDKTLLEEDGIW 216


>UniRef50_D0SAP6 Transcriptional regulator n=3 Tax=Acinetobacter RepID=D0SAP6_ACIJO
          Length = 301

 Score =  168 bits (424), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 5/230 (2%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M +    H+RLA RL+ I+++L  G  L V +LA EF VS RT+ RDF     YL L   
Sbjct: 1   MKRKASTHERLAERLANILTKLNTGYQLGVAELAHEFQVSTRTIERDFDRLNTYLPLFQD 60

Query: 61  S--GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP 118
                  L         + D+  FA  SG++ L+P LD   +  LL    +    A    
Sbjct: 61  EYTKKYFLDPVYLGRFKLQDIQNFAQLSGISELYPSLDMTFLRGLLDERANQVFSAKGYY 120

Query: 119 VPSPSG-ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
             +    A  F     AI  R++++ I        + P RL+ HQ +WYL A     +  
Sbjct: 121 YENAQQFAEHFQVFAGAIHKRQKISFIYND-LLRHVDPYRLIHHQGSWYLAAAVADELRA 179

Query: 178 FTLDEIHLIQPLQ-ETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226
           + L +I  +   + E F  +  +   +E    I    H + ++ S+   V
Sbjct: 180 YRLSKIDQVVVHESELFDHHLEVLTQLELSEGIWFAKHKQTVKISVRPEV 229


>UniRef50_C1MBC8 Helix-turn-helix domain-containing protein n=1 Tax=Citrobacter sp.
           30_2 RepID=C1MBC8_9ENTR
          Length = 303

 Score =  166 bits (421), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 1/207 (0%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64
             RHD+L  RL LI++RL  GE+L++R LA EF V  +T+RRD  +RL YL+L  Q    
Sbjct: 1   MDRHDKLGYRLGLILTRLNNGESLTIRGLADEFNVCEKTIRRDLTKRLAYLNLHRQGKQY 60

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
            L       +   D+  F    G+ GLFP  + RL+N LL   E+   +    P  +   
Sbjct: 61  WLPKGILGQRSNTDLRRFTRILGIEGLFPRWEDRLLNVLLGDTENNPFLIKKRPYENCGA 120

Query: 125 ALSFW-RLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183
            +S    +  AI    ++    + +      P R++  +  WYL A HEG +  F +  +
Sbjct: 121 FMSTLNAISGAIQASLKIAFTYKEKMFSATEPYRVVNDRGLWYLAARHEGTLKSFAVSTM 180

Query: 184 HLIQPLQETFRRNDSLCRLVEDPVFIQ 210
             +Q     F  +  + + VE    I 
Sbjct: 181 THVQVSNMRFSPDPVVSQQVEHAESIW 207


>UniRef50_B8F3U1 Transcriptional regulator-like protein, helix-turn-helix
           domain-containing protein n=3 Tax=Pasteurellaceae
           RepID=B8F3U1_HAEPS
          Length = 295

 Score =  166 bits (419), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 11/214 (5%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-GY 63
            +++  LA RLS I+S+L  G+ + + +LA +FGVSVRT++RD ++RL +L+ E     +
Sbjct: 1   MQKNTVLAQRLSEILSQLNQGKRIDINQLAEDFGVSVRTIQRDIKDRLAFLEWEESGPRH 60

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPS 123
            ++      +    D+  FA  + ++ LFP +DR      L    +  V           
Sbjct: 61  YKINRYKLGILSQQDISRFALFASISDLFPKVDRDFYQEKL----TDSVKVKGFQYEDIR 116

Query: 124 GALSFWRLI-QAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
              + ++LI QAI   + +  + +       +  ++AP  L+     WYL+   E     
Sbjct: 117 HLDNEFQLIKQAIEAHKFIDFLYKKSGQIDGKFYKIAPYSLINKNGIWYLIGTDEDKQKT 176

Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
           F   +I +++ L ETF  N  L   ++    I  
Sbjct: 177 FCFTQITMLKMLDETFEPNQQLQEEIKSNDSISF 210


>UniRef50_A3UTJ4 Putative transcriptional regulator n=1 Tax=Vibrio splendidus 12B01
           RepID=A3UTJ4_VIBSP
          Length = 296

 Score =  159 bits (403), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 2/213 (0%)

Query: 3   QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSG 62
           +  + HD LA RL +I++RL  GE L + +L+ EF VS RTL+RDF ERL YL ++    
Sbjct: 2   RRMKEHDTLAKRLGIILTRLNTGEKLYLEELSREFRVSERTLQRDFNERLNYLPIQRDGA 61

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
              L       Q   +V +   + G   LF G    L N +L    +P  +     +   
Sbjct: 62  CYFLDPQALGRQSNNEVSLLLMKMGFDTLFSGK-HYLSNGVLNNKSTPPFLFKNPQIEDI 120

Query: 123 SGALS-FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLD 181
           S   S F +LI++I  +  +     G+  +   P RL+  +  WYL   H   +    + 
Sbjct: 121 SKNASVFEKLIESIQRKSTIGFTCNGKSYDEFHPYRLVNDRGHWYLAGTHRNRLESLRVA 180

Query: 182 EIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214
           +I  +   ++ +  + ++   +    +   LPH
Sbjct: 181 KIRELVRYEDKYSPDLNVEYKLTGRGYKDELPH 213


>UniRef50_B9CZE1 Helix-turn-helix, type 11 domain protein n=2 Tax=Campylobacter
           RepID=B9CZE1_WOLRE
          Length = 288

 Score =  159 bits (401), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 3/204 (1%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64
            R HD++  RLS I++RL +G  L + +L  EF V+ RT+ RDF  RL  L ++ ++G  
Sbjct: 1   MRSHDKIGFRLSRILTRLNSGARLGIDELVEEFNVNKRTILRDFE-RLSILPIQKENGKY 59

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
            L           D+  FA   G   LFP LD R ++ +L    +   +       S   
Sbjct: 60  FLEEYALGKLGFKDIKAFAALIGARSLFPELDDRFISDVLNEKLNKAYLIKNQGFESIQI 119

Query: 125 ALS-FWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183
           +   F  +  A+   R +     G +  +L P +L+ +   WYL+A+ EG +  FTL +I
Sbjct: 120 SRDDFEAVSAAVIKNRTLECEYNG-KERKLNPYKLINNSGIWYLLADDEGKLKNFTLSKI 178

Query: 184 HLIQPLQETFRRNDSLCRLVEDPV 207
             I+   +TF  N    + +E   
Sbjct: 179 KRIKIKGDTFAANAEFLKRIEKND 202


>UniRef50_B7GVE1 DeoR-like helix-turn-helix domain protein n=2 Tax=Acinetobacter
           RepID=B7GVE1_ACIB3
          Length = 303

 Score =  154 bits (388), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 10/232 (4%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY---LDL 57
           M ++ + H+RLA RL+ II+RL  GE L   +L  +FGV+ +T++RD     +    L +
Sbjct: 1   MVKSLKAHERLAERLANIITRLNRGEYLDSNELTLDFGVTKKTIQRDIERLSIAGLPLVI 60

Query: 58  EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117
           + ++    L           D+  FA  SG+ GL+P LD   +  LL    S    A   
Sbjct: 61  DEKTRKFYLGANYVGKISPQDIQNFAQLSGITGLYPNLDLSFLRELLDSRSSEVYAAKGY 120

Query: 118 PVPSPSG-ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEG--H 174
              + +  +  F  + +AI  R+++T      +   + P +L+ H  +WYL A       
Sbjct: 121 FFENTTHFSELFKLIREAIQDRKQITFQY-NSKLRTVQPYKLIHHHGSWYLAAVSNDQLQ 179

Query: 175 IAVFTLDEIH---LIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
           +  + L  I     IQ   + F  +  + + +++   I      R I  S+ 
Sbjct: 180 LRAYRLSRIGKDCQIQYHLDHFEPDIEIIKQLKNEESIWFGKEKREIVLSVQ 231


>UniRef50_C6SP18 Putative uncharacterized protein n=2 Tax=Streptococcus mutans
           RepID=C6SP18_STRMN
          Length = 307

 Score =  152 bits (384), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 88/239 (36%), Gaps = 19/239 (7%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65
              RL  I+S L     ++ ++LA +F VS RT+ RD        + +        G+  
Sbjct: 2   KLERLLAILSLLSDRNRITAKELAEKFEVSKRTIYRDLESLNQAGIPIVSYAGRDGGFSL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR----RLVNALLMCDESPCV----IAPAN 117
           ++    + +++         S L GL     +     L+  LL   ES  +    I  ++
Sbjct: 62  MKNYQIDKRILSKADTKNLYSALKGLQSIKQQPELIALIAKLLPEGESNPLADYDINFSS 121

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174
                        L +AI G+  V L      GRR  ++ P +L+     WYL A     
Sbjct: 122 WYTDSLIQKKIEILQEAIEGKSCVLLDYISSSGRRKRKIEPYQLVFKDSAWYLHAFCHKR 181

Query: 175 --IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ-ALPHFRFIQHSLLTFVPADS 230
               +F L  +  +  L+E F         ++   +   +L         +LT+ P D+
Sbjct: 182 QAFRLFKLRRMASLTLLEEKFTGRPYPALTLKSTAYSDFSLEPVEGYDKVVLTYHPEDA 240


>UniRef50_Q1QC98 Transcriptional regulator-like n=2 Tax=Proteobacteria
           RepID=Q1QC98_PSYCK
          Length = 300

 Score =  151 bits (381), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 14/216 (6%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQS-G 62
             R+H+RLA RLS II RL  GE L++ +LA  + VS+RTL+RDF++RL  L+L  +   
Sbjct: 2   KLRKHERLAYRLSDIIVRLNDGERLNIFELADTYKVSIRTLKRDFQDRLTLLELYEEGPQ 61

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
           + RL  +      + D+  FA  + +  L P +DR+     L    +  +        + 
Sbjct: 62  FYRLHPSNIGYLDIADIQRFASFASVQDLLPKIDRQFFQEKL----NQSIFVKGFAYENI 117

Query: 123 S-GALSFWRLIQAITGRRRVTLIAE--------GRRCERLAPCRLLIHQQTWYLVAEHEG 173
           S     F  + QAIT  + +               +   L P  LL     WY+V    G
Sbjct: 118 SERTDDFRTINQAITNHQYIEFYYRKVSDYASNNSKHYLLEPYHLLNKNGIWYVVGRLHG 177

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209
               F   ++  +    ETF+ ++ + +   D   +
Sbjct: 178 QTRTFCFTQMTQLHINTETFQCSEDIKKETLDTDSL 213


>UniRef50_A6VRC7 Helix-turn-helix type 11 domain protein n=3 Tax=Proteobacteria
           RepID=A6VRC7_MARMS
          Length = 328

 Score =  144 bits (364), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 27/243 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65
            A R+  ++  L   E ++  +LA     S+RT+ RD           Y +   Q GY  
Sbjct: 2   RASRILKMLMMLQTHEKVTAAELADACETSIRTVYRDIEALSAIGVPVYSEQGVQGGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALL-------MCDE 108
           L+   + +  +                    G+  L      +L  AL           +
Sbjct: 62  LQGYRTRLNGLSAKEAETLFLAGLSGPAQKMGIDTLLADAQLKLKAALPENIRPEIDRLQ 121

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTW 165
           S  ++   N             L+ A+  +R V +  +   G    +L P  +++    W
Sbjct: 122 SRFLLDAPNWFSDDEKVTYLPDLMTAVLEQRCVVMQYQSWKGEINRQLQPLGIVLKGGQW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDPVFIQALPHFRFIQHSLL 223
           YL+A+ E  +  + +  I  +  L E F R          +D +    +  F  I    L
Sbjct: 182 YLLAQVEQDVRTYRVSRIGSLTLLGEVFERPKDFNLTAFWQDSLRRMEVVQFPIIAEVRL 241

Query: 224 TFV 226
           T +
Sbjct: 242 TSL 244


>UniRef50_D2YQU2 Transcriptional regulator, putative n=2 Tax=Vibrio
           RepID=D2YQU2_VIBMI
          Length = 290

 Score =  144 bits (363), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 5/204 (2%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64
             + ++LA RLS I+SRL AGE LS+  L  EFGV  RT+ RDF  RL +L +E + GY 
Sbjct: 1   MNKSEKLAYRLSQILSRLYAGEKLSLIDLEQEFGVHERTVLRDFN-RLAFLPIEREEGYY 59

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
            L+            L      G+  LFP  DR+ +   L   ++P ++    P+   + 
Sbjct: 60  YLKQLDHRNPKAHKALHALSNMGIDKLFP--DRKTMTQALNH-KTPSILFRHIPIEDSAR 116

Query: 125 ALSFWRL-IQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEI 183
                 L   AI  R  +TL    RR  ++ P +L+  +  WYL+A        F + EI
Sbjct: 117 FRDTLILIADAIHQRNTLTLTFHNRRYHQMEPYQLINERGYWYLIAAQRTQPHSFRVAEI 176

Query: 184 HLIQPLQETFRRNDSLCRLVEDPV 207
             I    + +  +  L   +    
Sbjct: 177 AEIIRHDDIYTPSPILSEKLTREE 200


>UniRef50_B2T6R2 Helix-turn-helix type 11 domain protein n=4 Tax=Proteobacteria
           RepID=B2T6R2_BURPP
          Length = 321

 Score =  141 bits (355), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 25/242 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65
            A RL  I+  L A   ++ + LA E  VS+RT+ RD           + +   + GY  
Sbjct: 2   RASRLLSILMTLQARGRVTAQFLADECAVSLRTIYRDIDALSAAGVPVHSERGAEGGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRS----------GLAGLFPGLDRRLVNALL-------MCDE 108
           L    + +  +      +             GL  +  G   +L+ AL            
Sbjct: 62  LDGYRTRLNGLSSQEAESLFLAGLPGPMQALGLGAVMAGAQTKLLAALPVELRSTAERMR 121

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQTW 165
           S   +                 + +A+  +  + +  +     +  R+ P  +++    W
Sbjct: 122 SRFHLDAPAWFSDADEPAHLPLIARAVWEQHPLEIRYQSWKAEKFRRIEPLGIVLKSGAW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
           Y+V      + ++ +  I  I  L ETF R  +           Q L        + L  
Sbjct: 182 YVVGRVGQDLRIYRISRILEISLLDETFERPCAFDLTTYWQDSTQRLSEEMHASEATLRL 241

Query: 226 VP 227
            P
Sbjct: 242 SP 243


>UniRef50_B2JN46 Helix-turn-helix type 11 domain protein n=4 Tax=Proteobacteria
           RepID=B2JN46_BURP8
          Length = 323

 Score =  141 bits (354), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 76/244 (31%), Gaps = 28/244 (11%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLR 67
            RL  ++  L     ++ + LA EF VS+RT+ RD  +        Y D     G+  L 
Sbjct: 4   SRLVSMLLMLQVKGRVTAQALADEFDVSIRTVYRDIDQLSAAGVPVYADRGPGGGFALLD 63

Query: 68  TAGSEMQMVPDVLIFAH----------RSGLAGLFPGLDRRLVNALLMCDE------SPC 111
              +++  +                    GLA        +LV AL           S  
Sbjct: 64  GYRAKLTGITRAEAETLSIAGLTGAASDLGLAEQLRAAQLKLVTALPDAAPDTSRIGSRV 123

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-------GRRCERLAPCRLLIHQQT 164
            I P      P+       L  A+  ++RV++                  P  L++    
Sbjct: 124 HIDPVGWYQRPTPTPWLTMLAGAVWEQKRVSMQYRTWNGTDDKEGVRVRDPLGLVLKGGE 183

Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLT 224
           WYLV      +  + +  I  +    ETF R D      E    + +         + L 
Sbjct: 184 WYLVTRVRTQLRTYRVSSIAQLTVHDETFERPDGFDLREEWTAAVASFERSLLRHTARLR 243

Query: 225 FVPA 228
             P 
Sbjct: 244 LSPE 247


>UniRef50_O85446 Putative uncharacterized protein (Fragment) n=1 Tax=Vitreoscilla
           sp. RepID=O85446_9NEIS
          Length = 190

 Score =  140 bits (352), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 14/193 (7%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-EY 59
           M+   +   +LA RLS I+  L +G+ LS   LA ++GVS++T++RD  +RL  L   E 
Sbjct: 1   MSANTK---KLAERLSAILVDLHSGQRLSAHGLAEKYGVSLKTIKRDLGQRLDNLPWLET 57

Query: 60  QSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119
              +  L T   +   +  +  F   + +  LFP  D+  ++ LL       ++      
Sbjct: 58  GPQFYCLDTQQMQHTNLETLTRFCWFAAIKELFPPKDQAFLDNLL----KDHILVKGLKY 113

Query: 120 PSPSG-ALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQTWYLVAEHEG 173
            +  G    F +L QAI     V         +  +   +AP  L+     WY++   +G
Sbjct: 114 ENIQGLKQQFLQLEQAIDLYHMVYFDYCKINEKQAKPYTIAPYGLVNKNGIWYVIGLDQG 173

Query: 174 HIAVFTLDEIHLI 186
               +   +I  +
Sbjct: 174 REKTYNFVQISNV 186


>UniRef50_Q5WCJ1 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WCJ1_BACSK
          Length = 321

 Score =  139 bits (351), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 80/236 (33%), Gaps = 30/236 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL  I+  L   + +S + LA E GVS RT+ RD          +Y +     G+  
Sbjct: 2   RAERLLSIVLLLQNRKIISTKALAEELGVSERTVHRDMDALSSAGIPVYAERGKTGGWKL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRS----------GLAGLFPGLDRRLVNALLMCDESPCVIAP 115
           L    +++  +    +               G    +     +L+ +L          A 
Sbjct: 62  LDGYRTQLTGLTKEEVKTLFLSPPIDLLGDLGYTKNWQEAREKLLASLSSATSVDFADAQ 121

Query: 116 ANPVPSPSGALSFWRLIQA-------ITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164
                  S        ++A       +  +R +++  E          + P  L+    T
Sbjct: 122 NRIYIDASTWRGKKETVEAFSLLNQGLWEQRALSISYEKYGSTASEREVEPLGLVAKGST 181

Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216
           WYL+A  +  +  F    I   Q L + F R ++    R   D    FI+ LP + 
Sbjct: 182 WYLIAAEQQELKTFRASRIRSAQLLPKRFERPENFDLARYWHDSKNAFIRTLPSYE 237


>UniRef50_C0EAB2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum
           DSM 5476 RepID=C0EAB2_9CLOT
          Length = 298

 Score =  139 bits (350), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 72/215 (33%), Gaps = 18/215 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRT 68
           RL  +I  L+    ++ ++LA  F VS RT+ RD           Y       G   L  
Sbjct: 5   RLFEMIYLLLDRRRMTAKELAERFEVSERTVYRDVEVLSAAGIPVYATKGRGGGIQLLDD 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRL--VNALLMCDESPCVIAPANPV-PS 121
              +  ++ +         L G+    +P +D  L  +++L     +  +          
Sbjct: 65  FVLDKSVLSEREKNEILFSLQGMSAAHYPEIDEVLNRLSSLFQQSNTDWIDVDFTQWGSD 124

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGHI 175
                 F RL  AI  R+RV +        +    + P +L    + WYL A        
Sbjct: 125 EEEKKKFARLRDAILSRKRVRMCYCSAYGIQSSRTVEPVKLRFKGKAWYLQAYCCKRQEY 184

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210
            +F L  I  +    E F          E P F Q
Sbjct: 185 RMFKLFRISNLSVTDELFEPKQPPSWEEEKPSFSQ 219


>UniRef50_A6QCN2 Transcriptional regulator n=1 Tax=Sulfurovum sp. NBC37-1
           RepID=A6QCN2_SULNB
          Length = 307

 Score =  138 bits (348), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 13/217 (5%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCR 65
           + +D++  RL++I+SRL   E LSV +LA EF VS RT++RDF ERL+   +       +
Sbjct: 5   KDYDKILTRLTVILSRLYDREALSVTELAEEFNVSGRTIQRDFNERLISFPIYQDKKKWK 64

Query: 66  LRTAGSEMQMVPDVLIFAHR------SGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119
           ++      ++                  + G F     +L++ +   D +P  I     +
Sbjct: 65  MQDGFRIEKIKSIEEQLVLDIIEKMTESIGGKFATTSHKLLSKIKNEDFNP--IYTKLNI 122

Query: 120 PSPSGALSFWRLIQ-AITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEHEGH 174
              S      +LI+ AI  +  +    E  R       + P +++ ++  WYLVA  +G 
Sbjct: 123 EDISDRFDDIQLIEKAIKDKTELECSYENEREGTFRANIQPLKIVNYEGFWYLVAFKDGT 182

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
           +  + +  +  IQP  +TF  ++ +  L+++ + I  
Sbjct: 183 VQKYYIKTLSNIQPTAKTFTVDEDIEELLKNSINIWF 219


>UniRef50_B1BVT1 Transcriptional regulator, DeoR family n=3 Tax=Bacteria
           RepID=B1BVT1_CLOPE
          Length = 299

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 66/205 (32%), Gaps = 18/205 (8%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67
            RL  II  L+     +  +LA +F VSVRT+ RD          +Y       G     
Sbjct: 4   SRLFRIIYYLIEKGKSTAPELAKKFEVSVRTIYRDIDVISSVGIPIYATQGKNGGIVIDE 63

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------VNALLMCDESPCVIAPANPVPS 121
               +  M+         SGL G+F             + AL        +    +    
Sbjct: 64  DFTLDKSMLSQKEKEQILSGLQGVFATNGNNTNELLTKLGALFHMQTKNWIEVDFSDWVQ 123

Query: 122 PSGALS-FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGH 174
              A + F  +  AI  R  ++              + P +L+   + WY+         
Sbjct: 124 CQPAQNIFNDIKNAILDRHIISFEYFNNLGNSIFRHIQPLKLIFKSKAWYVYGFCMLRND 183

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSL 199
              F L  I  ++  ++ F   +++
Sbjct: 184 YRFFKLTRIKHLKITEKQFIPPETI 208


>UniRef50_Q65LG5 Hypothetical DNA-binding protein n=1 Tax=Bacillus licheniformis
           ATCC 14580 RepID=Q65LG5_BACLD
          Length = 320

 Score =  137 bits (346), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 82/249 (32%), Gaps = 31/249 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYC----- 64
              RL  I+  L A   ++ ++LA    VS RT+ RD        + +  + G       
Sbjct: 2   RGDRLISILLMLQAQGQMTAKELAERLEVSERTIYRDMEALSGAGIPVVAERGINGGWSL 61

Query: 65  ---------RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPC---- 111
                     L+ +      VP         GL  +      +L+ +L            
Sbjct: 62  LDDYQTTLTGLKESEIRALFVPLSEQLLDDLGLTRISEEARNKLIASLPSEYRQNAKDVW 121

Query: 112 ---VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164
               I   +       A SF  L  AI   +++ ++ +          +AP  L+     
Sbjct: 122 NRIYIDTCSWRHKKEKAESFEVLKDAIWKDQKLKIVYQRADGQTADRVVAPLGLVAKGAN 181

Query: 165 WYLVA-EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFRFIQ 219
           WYL+A +  G I  +    I     ++ETF R ++             FI+ LP +    
Sbjct: 182 WYLIASKENGEIRNYRASRIKSAVFVRETFDRPENFDIAHVWRSSTKEFIERLPTYEVRV 241

Query: 220 HSLLTFVPA 228
            +    +P 
Sbjct: 242 KAAQAILPR 250


>UniRef50_D1CGQ4 Helix-turn-helix type 11 domain protein n=1 Tax=Thermobaculum
           terrenum ATCC BAA-798 RepID=D1CGQ4_THET1
          Length = 317

 Score =  137 bits (345), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 73/243 (30%), Gaps = 28/243 (11%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYC----RLRT 68
           R+   +  L A   ++  +LA    V VRT RR         + +E + G          
Sbjct: 7   RVLAALELLQAHGRMTGAELARRLEVDVRTARRYIEMLQDLGIPIEGERGRYGAYRLRPG 66

Query: 69  AGSEMQMVPDVLIFAHRS---------------GLAGLFPGLDRRLVNALLMCDES--PC 111
                 M  +    A                   +      L R +  +L    ++    
Sbjct: 67  YKLPPMMFTEDEALALTLGLLLSRRSALGAATPAIESALAKLSRVMPASLQEQVQAVEES 126

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167
           +I    P  SP  +     +  A+  ++RV +               P  L+     WY 
Sbjct: 127 LILDVAPAESPPDSSVILTMSLAVHKQQRVRMTYRAWNGEETEREFDPYGLVYRDGRWYT 186

Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTF 225
                      +F LD +  I  L  TF R +    L E    I  +P   +++  L T 
Sbjct: 187 TGYCHLRRAQRLFRLDRVLCIAMLDATFERPEGFDPLQEVVRTIANIPDDWYVEVVLETS 246

Query: 226 VPA 228
           +  
Sbjct: 247 MAR 249


>UniRef50_A9AWW0 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AWW0_HERA2
          Length = 319

 Score =  137 bits (344), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 72/217 (33%), Gaps = 28/217 (12%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG----YCRLRT 68
           RL  I+  L + + +   +LA+   +S RT+RR         + +E + G    Y   R 
Sbjct: 7   RLLTILELLQSHQRMRGAELASRLEISQRTVRRYVVMLQDMGIPVEAERGPDGAYYLGRG 66

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLF---------------PGLDRRLVNALLMCDE--SPC 111
                 M+      A   GL  +                  L+R +   LL         
Sbjct: 67  YTIPPLMINPTEALALVLGLRMIHALQFPVDATAIEGAIAKLERVMPTILLDQVRAFQEA 126

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167
           +     P P+         L  A+  R++V L  +            P  ++ +Q  WY 
Sbjct: 127 ITFHVAPPPALLQPSIVASLSVAVHTRQQVWLSYQTYNGDASVRVFDPYGIVYYQGYWYS 186

Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRL 202
           V        +  F +D I  ++ L ++F R      L
Sbjct: 187 VGYCHQRNDLRTFRIDRIQELKLLNQSFERPQDFDAL 223


>UniRef50_A7GBR0 Putative uncharacterized protein n=10 Tax=Bacteria
           RepID=A7GBR0_CLOBL
          Length = 310

 Score =  137 bits (344), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 26/225 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCR 65
              RL  II  L+  E +S  KLA  F V+ RT+ RD     L  + +        G   
Sbjct: 2   KIDRLISIIMVLLNNERISAIKLAEMFEVTPRTIYRDIDTISLAGIPIITHTGVNGGVSI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC---------------DESP 110
           +     + +      I     GL+ +   L  + V   L                   + 
Sbjct: 62  MPEYKVDKKFFTASDISTLLMGLSSVSTTLSNKEVIGTLEKVKSLLPKDQFRDIELKSNQ 121

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166
             I     + + S   +  ++  A+   + ++    G         + P +L++ +  WY
Sbjct: 122 ITIDLTTWMGNKSFQPNLEKVKSALNDSKYLSFEYYGGNRKKDKRCIEPYKLILKENNWY 181

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209
           L           VF L  I  ++ L+  F   +   + ++   +I
Sbjct: 182 LQGYCTLREDFRVFKLSRISNLEILESIFVPREFKSKPLDGSGWI 226


>UniRef50_C6D6M2 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6D6M2_PAESJ
          Length = 237

 Score =  136 bits (342), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 71/232 (30%), Gaps = 29/232 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLE---YQSGYCRL 66
            A RL  I+  L      +  +LA    VS RT+ RD     L  + +       G   L
Sbjct: 2   RADRLISILMLLQLEGKKTAAELAERLEVSERTIYRDMDALSLSGVPVYADSGAGGGFSL 61

Query: 67  RTAGSEM---QMVPDVLIFAH--------RSGLAGLFPGLDRRLVNALLMCDESPC---- 111
                        P++             + G+         +L+ AL            
Sbjct: 62  PPNYKSPIDGLTTPEIQALFLYAAEGSTDQLGIVSALRSALLKLMQALPEQSREDAAWIR 121

Query: 112 ---VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQT 164
               I P +          F  + ++I     V +    R    +   + P  L+     
Sbjct: 122 QRIHIDPDSWQREEKALPHFAAVQESIMQHYAVEISYRSRDGAEKSLTVKPYGLVAKAGI 181

Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFR 216
           W+L+ E +  +  + L  I  ++  +E F R +S         + + +  + 
Sbjct: 182 WFLIGEGDQGVQAYRLSRIQGLKITEEKFERPESFDLQ---GFWKEWVTRYE 230


>UniRef50_C1IA92 Transcription regulator n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1IA92_9CLOT
          Length = 301

 Score =  136 bits (342), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 18/203 (8%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
              RL  II  L+  + ++ ++LA  F VS RT+ RD  +       +Y+      G   
Sbjct: 5   KGNRLFEIIYILLDKKNVTAKELAEHFEVSQRTIYRDIEDLSQSGVPIYMTKGKGGGISL 64

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAPANP 118
           L        ++         + + GL       F G+  +L + L   +E+   +  +N 
Sbjct: 65  LSDFILNKAILSQEEKKEILAAMQGLNAVNKSEFNGVLSKLSSFLGGDNENWIEVDFSNW 124

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEHEGH 174
             + +    F  +  +I  +  ++              + P +L+   Q WYL A     
Sbjct: 125 DKNNTLGEKFTTIKNSIINKNLISFEYFNSNGKLLERIVEPLKLVFKGQGWYLYAYCRER 184

Query: 175 I--AVFTLDEIHLIQPLQETFRR 195
                F L  +  I  + E F R
Sbjct: 185 EDNRFFKLTRMSNINIILENFNR 207


>UniRef50_B2V022 DeoR-family transcriptional regulator n=5 Tax=Clostridium
           RepID=B2V022_CLOBA
          Length = 298

 Score =  136 bits (342), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 18/201 (8%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65
              RL  I++ LV+ ++++  +LA  F VSVRT+ RD        + +        G   
Sbjct: 2   KIDRLFSIVNILVSKKSVTATELAERFDVSVRTIYRDIEILSTNGIPICSAQGKGGGLSI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFP------GLDRRLVNALLMCDESPCVIAPANPV 119
           L     +  ++ D         L  +              + +L   +    +    +  
Sbjct: 62  LDNYSIDKTILSDSEQKQVLMALQSVNATGQINVDDSFLKLRSLFRKNVIDWIEIDFSGW 121

Query: 120 PSP-SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174
                   +F  +  +I   + V +        R    + P +L+     WY+       
Sbjct: 122 EQSKEDKENFKIIKDSIINSKAVYISYFSNKGERSERIVEPYKLIFKGYNWYIYGYCRKR 181

Query: 175 --IAVFTLDEIHLIQPLQETF 193
             +  F L  I  I+ L++TF
Sbjct: 182 KDMRFFKLTRIEKIEILKDTF 202


>UniRef50_C0ZCT1 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZCT1_BREBN
          Length = 309

 Score =  135 bits (340), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 26/224 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCR 65
              RL  I+  L+    +S R+L+  F VS+RT+ RD        + +        GY  
Sbjct: 2   KVERLLAIVIMLLNKRRVSARELSDHFEVSLRTVYRDLETINAAGIPIVAYPGVSGGYEI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES--------------PC 111
           +     + Q +    + A  + L G+    D + +  LL   ++              P 
Sbjct: 62  MENFTIDRQYLSLDELVAVIAALKGVHSSTDDKQIGQLLEKIKALLTTAPSSLQGSAHPV 121

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167
           V        +P+ A    +L +AI  R RV +I            + P  L+I    WY+
Sbjct: 122 VYDFNPWGSTPAIAEKVNKLREAIEKRLRVRIIYTKIQGDATERTIEPVTLIIKGYVWYI 181

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS-LCRLVEDPVF 208
                      +F L  I  +  L E F    + + +L     +
Sbjct: 182 YGYCLQRQEDRLFRLSRIADMSVLTEEFSPRPNQIDKLEWLEEW 225


>UniRef50_A6P211 Putative uncharacterized protein n=5 Tax=Bacteria
           RepID=A6P211_9BACE
          Length = 302

 Score =  135 bits (339), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 68/205 (33%), Gaps = 20/205 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL----EYQSGYCR 65
              RL  I+S L+  E ++  +LA +F VS RT++RD        + +        G   
Sbjct: 2   KMERLIGILSILLQCEKVTAPELAEQFEVSRRTIQRDIESLCRAGIPITTAQGAGGGISI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES---------PCVIAPA 116
           +     +  ++    + A  +GL  L      R    L+    +           ++   
Sbjct: 62  MEGYRVDRTVLTAPEMQAILAGLRSLDSVSGTRRYAQLMEKLSAGTGGLVPGCAHMLIDL 121

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHE- 172
           +     S       +  AI     +       +G     + P  L+ H  TWY+      
Sbjct: 122 SSWYKTSLPPKIELIQGAIEQHHTICFTYFSPKGESVRTIEPYYLVFHWSTWYVWGWCRM 181

Query: 173 -GHIAVFTLDEIHLIQPLQETFRRN 196
                +F L+ +  +    E+F   
Sbjct: 182 REDFRLFKLNRMTELT-TGESFAPR 205


>UniRef50_C0CTB1 Putative uncharacterized protein n=4 Tax=Firmicutes
           RepID=C0CTB1_9CLOT
          Length = 312

 Score =  135 bits (339), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 77/228 (33%), Gaps = 26/228 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  II  L+  E +  ++LA  F VS RT+ RD        + +    G       
Sbjct: 2   KTDRLVSIIMMLLDKERIGAQELADRFEVSPRTIYRDIETINMAGIPVRSTPGVGGGFEI 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLD-----RRLVNAL--------------LMCDESP 110
             E ++  +V   A  S +      L        LVNAL              +    + 
Sbjct: 62  MQEYKVDKNVFSAADLSAILMGLSSLSGMVRGNELVNALAKVKRFIPADRAKEIELKANQ 121

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166
             I  +  + + +      R+  A+   R ++         +    + P ++++    WY
Sbjct: 122 IYIDLSPWMGNRNIQPYLERVKTALQESRLLSFEYADRFGNKTVRTVEPYQIVLKGSHWY 181

Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
                       +F L  I  +Q  +ETF   D    +++    ++ +
Sbjct: 182 FQGYCRKREDFRLFRLSRISNLQMTRETFSPRDYQKPVLDFGDILKTM 229


>UniRef50_B0MJK4 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
           14662 RepID=B0MJK4_9FIRM
          Length = 301

 Score =  134 bits (338), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 67/203 (33%), Gaps = 17/203 (8%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRL 66
           + RL  II  L+  + ++  +LA  F VSVRT+ RD          +Y       G   L
Sbjct: 3   SSRLFEIIYILLEKKKVTAPELAERFEVSVRTIYRDIDALSSAGIPVYCTQGKGGGIGLL 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLA------GLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
                +   + +         L        +        +++L   D+   V    +   
Sbjct: 63  EDFVMDKSALTEEEQSQILLSLQCMAVTNHMDAKKLLSRLSSLFQKDDENWVYVDFSRWN 122

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEHE--GH 174
                  F  L +AI  R  V       +         P +L      WYL A  +  G 
Sbjct: 123 PRGEKELFETLKEAILNREVVIFDYYNAKGEYSRREAEPMQLYFRGMDWYLTAFCKKSGE 182

Query: 175 IAVFTLDEIHLIQPLQETFRRND 197
           I +F L  +  +   +E F R D
Sbjct: 183 IRIFKLKRLKNLVKTEERFLRKD 205


>UniRef50_UPI0001C37EC6 helix-turn-helix type 11 domain-containing protein n=1
           Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37EC6
          Length = 302

 Score =  134 bits (338), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 19/201 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  I+S L+  + ++  +LA +F VS RT+ RD        + +  + G     + 
Sbjct: 2   KIDRLIGILSLLLQRDKITSAELAEKFEVSRRTILRDIETLNQSGIPVFAEQGQGGGISV 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLD--------RRLVNALLMCDES-----PCVIAPA 116
               +M   +L       +      LD        RRL+  L   D S       +I   
Sbjct: 62  MEGYKMDRTLLSSEDMRAILSGLQSLDSVSGTNRYRRLMEKLSADDRSSADADNHIIIDL 121

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAE--H 171
           +     + A     + QAI  R  +              + P  L+    +WY+      
Sbjct: 122 SSWDKSAVADKIELIKQAIEKRHIIAFSYFSPSSETQRNIEPYHLVFQWSSWYVWGFCTD 181

Query: 172 EGHIAVFTLDEIHLIQPLQET 192
            G   +F L  +  ++   E 
Sbjct: 182 RGDYRMFKLTRMTELKMTDEK 202


>UniRef50_Q9RY95 Repressor protein, putative n=1 Tax=Deinococcus radiodurans
           RepID=Q9RY95_DEIRA
          Length = 316

 Score =  134 bits (337), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 77/250 (30%), Gaps = 35/250 (14%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG----YCRL 66
           ++R+  ++  L A E ++  +LA    VS RT++R         + +E + G    Y   
Sbjct: 6   SLRVLTVLELLQAREEVTGAELARRLEVSPRTVQRYVARLQDLGIPVEGRRGVGGAYRLK 65

Query: 67  RTAGSEMQMVPDVL--------IFAHRSGLAGLFPGLD---RRLVNALLMCDE------S 109
                   M                   GL+ L P  +    +L   L            
Sbjct: 66  PGFRLPPLMFTGEEALALALGLRALQHLGLSDLLPAAEVAGAKLSRTLPPELRDTVAALE 125

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTW 165
                  +P  + + A     L QA    +R  L             +   R++     W
Sbjct: 126 QVAQLSVSPWVTSTDARLLTTLFQAAREGQRAELTYRSGAAQHTEREVEVYRVVHVDGRW 185

Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
           Y V      G +  F LD I   +  +ETF        L       Q LP     + S+ 
Sbjct: 186 YAVGHCRLRGALRCFRLDRIETCRLREETFTPPADFDAL---AFLQQELPAAHPYEISVW 242

Query: 224 TFVPADSPPE 233
                 +PPE
Sbjct: 243 LA----APPE 248


>UniRef50_C9AAC3 Transcriptional regulator n=3 Tax=Enterococcus casseliflavus
           RepID=C9AAC3_ENTCA
          Length = 302

 Score =  134 bits (336), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 17/199 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  +I  L+  E  +  +LA +F VS RT+ RD          +Y +     G   L +
Sbjct: 5   RLFGLIYHLLNHEKATTSELAKQFEVSTRTITRDINTLSSIGVPIYTETGRNGGVYLLSS 64

Query: 69  AGSEMQMVPDVLIFAHRS---GLAGLFPGLDRRLVNALLMCDESPCVIA----PANPVPS 121
              +  ++ +           G+  L P +  + +  L    + P         +     
Sbjct: 65  FVLDKVLLSEEERKNLLLALKGIRQLTPQISGQSLAKLQSLFKQPDADWLEVDFSTWHRR 124

Query: 122 PSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHEGH--IA 176
            +G  +F  L ++I     +T      +G +     P +LL   Q WYL A  +      
Sbjct: 125 ENGNDTFDLLKKSILTNHVITFDYISKQGLQKRICQPYKLLFRSQAWYLQAFDQQKNAFR 184

Query: 177 VFTLDEIHLIQPLQETFRR 195
            F +  +  +    + F  
Sbjct: 185 TFKISRMSQVHVTDQHFFP 203


>UniRef50_Q0AX84 YobV n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen
           RepID=Q0AX84_SYNWW
          Length = 311

 Score =  133 bits (335), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 76/229 (33%), Gaps = 32/229 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
              RL  II  L+  E +  ++LA  FGVSVRT+ RD     L  + +    G     + 
Sbjct: 2   KIDRLISIIIVLLRRERVQAKELAEMFGVSVRTILRDVDTINLGGIPIITYQGVNGGISI 61

Query: 70  GSEMQMVPDVLIFAHRS-------GLAGLFPGLDRRLVN------------ALLMCDESP 110
               ++   VL     +       G+A   P     ++              LL      
Sbjct: 62  AEGYRLDKSVLSAGDMATLISTLKGVAASIPDSRFDILAEKLKNPLSTSQLELLDLKSRQ 121

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166
            +I  +    +         L QAI   R +          R   ++ P  LL+  Q+WY
Sbjct: 122 MIIDLSPWGTNEQLKGKITLLRQAIENYREIEFAYIDAAGTRSIRQVEPYALLLKGQSWY 181

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRND------SLCRLVEDPV 207
           L A         +F L  I  +Q +  T++  +            ++  
Sbjct: 182 LFAWCLLRQDFRLFKLIRIKNLQLVNITYQPREVPMEQDYFENQWQETA 230


>UniRef50_A8S168 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S168_9CLOT
          Length = 302

 Score =  133 bits (335), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 71/209 (33%), Gaps = 21/209 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRT 68
           R   I+  L+  E ++  +LA EFGVSVRT+ RD           Y+    + G   L  
Sbjct: 5   RHFRILYILLNNERVTAPELAEEFGVSVRTIYRDIDTMSAAGIPIYMQGGRKGGIYLLEG 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVN--ALLMCDESPCVIAPANPVPSP 122
              +   +           L GL    +P +D  L+   AL M  +   +        + 
Sbjct: 65  YRLDKVTLSKTEQAEILLALQGLGAVQYPDIDPVLLKLGALFMSQDRDWIDVDLTRWGTA 124

Query: 123 S----GALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEH--E 172
                    F  L +AITG RR+               + P +L+   + WYL       
Sbjct: 125 ETVHRDKELFSILRKAITGLRRIHFEYYSAKGEMTVRTVEPAKLIYRCRAWYLAGYCLMR 184

Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLCR 201
               VF L  +      +E F  +     
Sbjct: 185 QEPRVFRLSRMKKTGLTEELFEYSPEKEA 213


>UniRef50_Q92EJ5 Lin0464 protein n=2 Tax=Firmicutes RepID=Q92EJ5_LISIN
          Length = 310

 Score =  133 bits (334), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 26/223 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
              RL  I+  L+  E +S ++LA  F VS+RT+ RD     L  + +    G       
Sbjct: 2   KVDRLMSIVLILLDKERISAQELADRFEVSLRTIYRDIDAIDLAGVPIRSTPGVGGGFEI 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLD-----RRLVNAL--------------LMCDESP 110
             + +M   V   A  S +      L        L+NAL              +    + 
Sbjct: 62  MPDYKMDSKVFSTADLSAILMGLSSLSNMVRGDELINALAKIKSFIPADRAKEIELKANQ 121

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166
             I  +    + +       +  A+   + +T         +    + P +L++    WY
Sbjct: 122 IYIDLSQWTGNNNIQPHVEIIKVALQENKLLTFEYIAHQGNKTVRIVEPYQLVMKSSHWY 181

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207
           L           +F L  +  +Q L++TF   D     +E   
Sbjct: 182 LYGYCQNRNDFRLFRLSRMSGLQILEDTFTLRDFQKPQLEMED 224


>UniRef50_UPI0001C425E1 hypothetical protein BpOF4_16355 n=1 Tax=Bacillus pseudofirmus OF4
           RepID=UPI0001C425E1
          Length = 325

 Score =  133 bits (334), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 32/238 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCR---- 65
            A RL  I+  L   E ++ ++LA +  V+ RT+ RD        + +  + G       
Sbjct: 2   RADRLLSILFSLQQNEKMTTKELATQLEVTERTIHRDMDALSAAGIPVFAERGKYGGWKV 61

Query: 66  ----------LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES------ 109
                     L+ +      +          G+   +    ++L+       +       
Sbjct: 62  LEEYKKAFSGLKESELNTLFLSPSSHLLTDLGIEQEWSEARKKLLATYPAKKKQELTRSW 121

Query: 110 PCVIAPANPVPS---PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQ 162
             +   ++        +       L QA+     V +  E     R    ++P  L+   
Sbjct: 122 DRIHIDSSTWRKRNAMTKEDGLKELQQAVWNDVNVEIDYEKADGKRSTRVISPLGLVAKG 181

Query: 163 QTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216
            TWY+VA   G +  F +  IH +  L E+F R           +    FI+ LP ++
Sbjct: 182 STWYVVAVSNGQLRNFKVSRIHSVTLLSESFDRPVDFNLAEYWHESKQKFIENLPKYK 239


>UniRef50_Q5WD79 Transcriptional regulator n=5 Tax=Bacillus RepID=Q5WD79_BACSK
          Length = 304

 Score =  133 bits (334), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 18/224 (8%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  II +L+  E LS  +LA EF VS RT+ RD        + +    G       
Sbjct: 2   KLERLISIIFKLLNNEILSASRLADEFQVSSRTIYRDIEAICAAGIPVVSYQGTNGGFGI 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP---------VP 120
               +    ++     S L  +   L     +  +            +            
Sbjct: 62  IKGYKFDKSLIGSYDLSNLITVLRSLSGIFEDKTIDHTIERLKSLDPSGNNGILSVDLES 121

Query: 121 SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGH 174
             + A S   L  AI  +R +               + P  +    + WYL       G+
Sbjct: 122 HRTEAHSLIGLRNAIQEKRIIRFDYVSSKNEWTSREIEPIHIQYKFRNWYLYGYCKERGN 181

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218
              F +  +  I   ++TF +N  + R  +     + L  F  +
Sbjct: 182 YREFRVSRMMNITLTEKTFAKNHDVKR--DTSFSAKNLERFEDV 223


>UniRef50_Q9S3S5 Putative uncharacterized protein n=1 Tax=Enterococcus faecium
           RepID=Q9S3S5_ENTFC
          Length = 302

 Score =  133 bits (334), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 75/222 (33%), Gaps = 20/222 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCR 65
            + R+  I+  L+  E ++ ++LA  F VSVRT+ RD  +       +  Q     G   
Sbjct: 2   KSNRMFGILCVLLEREKITAQELAEYFEVSVRTIHRDLLDLSSAGFPVTTQQGIGGGISL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC----------DESPCVIAP 115
           L        ++    I    SG+ G     +   +  LL             E+  +I  
Sbjct: 62  LPNFKYSKSVLNKEDIDLIVSGIQGFASIDESSKIKTLLAKLRLGQEDKLLLENDIIIDF 121

Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWYLVAEH- 171
            +     +       +  AI  RR + L            + P +L+  ++ WYL A   
Sbjct: 122 TSWNHKNTTIEKIKIIRSAIASRRLLELEYYSSNGYSKRTVEPYKLIFKEEYWYLFAYCT 181

Query: 172 -EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
                 VF L+ I  +   + T+         V    F   +
Sbjct: 182 QRQDFRVFKLNRISKLLLCERTYTERTDYEIPVLQSAFSNGV 223


>UniRef50_C6PMV9 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PMV9_9CLOT
          Length = 256

 Score =  132 bits (333), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 76/206 (36%), Gaps = 20/206 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  I+S L   E +++++LA  F VS RT+ RD        + +   SG     + 
Sbjct: 2   KIDRLLGILSVLANTERITIQELAERFEVSKRTIFRDLDTLNQSGVPIVAYSGIGGGVSL 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDR--------RLVNALLMCD------ESPCVIAP 115
               ++  ++L       +     GL           L+  L+  +      ES  VI  
Sbjct: 62  LEGYKLKNNILSKGDIKNIFTALNGLMSIDESNDLINLMAKLIPEETSMVFSESDYVIDL 121

Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEHE 172
           ++             L +AI  R+ + L       RR   + P +L+  Q  WYL A  E
Sbjct: 122 SSWFQDSITQEKVSNLHKAIKNRKCIYLEYISKRSRRVRIIHPHKLVFKQAYWYLYAFCE 181

Query: 173 G--HIAVFTLDEIHLIQPLQETFRRN 196
                 +F ++ I   + +  +F   
Sbjct: 182 DNQEFRLFKVNRIANYKIMDTSFSYK 207


>UniRef50_B1CBH7 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1CBH7_9FIRM
          Length = 299

 Score =  132 bits (333), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 19/218 (8%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCR 65
              RL  II+ L+  E ++   LA +F VSVRT+ RD  +     + +        G   
Sbjct: 2   KIDRLMGIITTLLNKEKVTAPFLAGKFEVSVRTINRDILDLCKAGIPIVTTRGAGGGIYL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLM---CDESPCVIAPANPVPSP 122
                 +  ++ +  I A  +GL G+    D      LL     +    +    +     
Sbjct: 62  DPDFKMDKSLLKEDEINAIYAGLKGITSISDNNKYELLLDKFKDNPKNDLDIDLSSYYKK 121

Query: 123 SGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEH--EGHIAV 177
           S +    ++ +AI  +  +       +G+    + P  L     +WYL A         +
Sbjct: 122 SLSDKIEKMQKAINNKLLLEFDYFSKKGKSHRVVEPYTLTFKWSSWYLYAYSLEREDFRL 181

Query: 178 FTLDEIHLIQPLQETFRRND------SLCRLVEDPVFI 209
           F L+    ++   ETF   +       + ++  + + +
Sbjct: 182 FKLNRSINLKETGETFLSREIPLQENDIDKIYPNDLNV 219


>UniRef50_A9KRE5 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KRE5_CLOPH
          Length = 299

 Score =  132 bits (332), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 75/215 (34%), Gaps = 20/215 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGY--------- 63
           RL  I   L+  ++++ ++LA  F VSVRT+ RD     L  + +    G          
Sbjct: 5   RLFEITYLLLNKKSMTAKELAEHFEVSVRTIYRDIDALSLAGIPVYTTKGKGGGISLMES 64

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV-PSP 122
             L  A    +   ++L                 R ++++    E+  +    +    + 
Sbjct: 65  YVLNKAVLSEKEQENILASLQGLHAVNRSEDATLRKLSSIFGKKEASWIEVDFSRWGSNS 124

Query: 123 SGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGH--IA 176
                F  + QAI  ++ + +I            + P +L+   Q+WYL A  +      
Sbjct: 125 EEKEKFELIKQAILEKQELEMIYHNSSGHESKRIVFPLKLIFKAQSWYLYAYCKEKKDYR 184

Query: 177 VFTLDEIHLIQPLQETFR---RNDSLCRLVEDPVF 208
           +F L  +  ++   + F        L  ++     
Sbjct: 185 IFKLRRVKNLKMNSKKFSIEVPPIDLDEIIYQNEV 219


>UniRef50_C4DT59 Predicted transcriptional regulator, COG2378 n=1 Tax=Stackebrandtia
           nassauensis DSM 44728 RepID=C4DT59_9ACTO
          Length = 339

 Score =  132 bits (331), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 73/233 (31%), Gaps = 27/233 (11%)

Query: 23  VAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEY----QSGYCRLRTAGSEMQMVP 77
                L+  +LAAE  VS RT+ RD    L+  + +      + GY  L    + +  + 
Sbjct: 14  QNRGRLTAAQLAAELEVSERTVYRDIGALLVSGVPIRAITGPEGGYQLLDGYRTRLTGLT 73

Query: 78  DVLIFAHR----------SGLAGLFPGLDRRLVNALLMCDESPC-------VIAPANPVP 120
                +             GL G   G   +L+ AL                    N   
Sbjct: 74  AAEAESLFVAGIPYAAAGLGLVGTLSGAQLKLLAALPQQARDRATGFSERFYFDAPNWYA 133

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVAEHEGHI 175
            P        +  A   + R+ +              + P  +++    WY+VA  EG +
Sbjct: 134 EPDQTRFLGAVTDATWSQHRLRIRYRRWEAPQEVERVIEPFGVVLKAGRWYVVARVEGSL 193

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228
             F +  I  +  + E F R            ++  L      Q +++   PA
Sbjct: 194 RTFRISRILELDTMDEEFTRPADFDLTAHWTRYLAELSVRLRAQEAVVRLSPA 246


>UniRef50_C6CXH2 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillales
           RepID=C6CXH2_PAESJ
          Length = 319

 Score =  132 bits (331), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 31/237 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL---EYQSGYCRL 66
            A RL  I+  L   E L+ R+LA    VS RT+ RD     L  + +     ++G  RL
Sbjct: 2   RADRLLSIMILLQNNEILTTRELAKRLEVSDRTILRDMDALSLSGIPVVADRGKTGGWRL 61

Query: 67  RT---AGSEMQMVPDVLIFAHRSGLAGLFP--------GLDRRLVNALLMCDESPCV--- 112
                +      + D            L           + ++L+ +L    +S  +   
Sbjct: 62  MDHFRSYLSGLKLEDTKALFILPAEQMLKDLGVEIKGLDIRQKLLASLPDSSKSEALHYM 121

Query: 113 ----IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164
               +      P+     +   + +A+    R+ +             ++P  L+    +
Sbjct: 122 EKVYMDTGTWKPAEEKNNALLTIQKALWEDTRLNMAYRKADGTSSERTVSPLGLVAKGSS 181

Query: 165 WYLVAE-HEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216
           WYLVA   +G++  F +  I   +  +E F R          +     F  +LP F 
Sbjct: 182 WYLVAMNDDGNLRSFRVSRITKAEATEELFSRPAEFDLAEYWKQSKLDFAGSLPTFE 238


>UniRef50_A6F2P0 Transcriptional regulator, DeoR family protein n=2
           Tax=Alteromonadales RepID=A6F2P0_9ALTE
          Length = 318

 Score =  132 bits (331), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 62/231 (26%), Gaps = 30/231 (12%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRT---- 68
           R+  ++  L     +   +LA   GV  RT+RR       + + +  + G          
Sbjct: 7   RVLTVLELLQTHGQIGGAELAERLGVDRRTIRRYITVLEELGIPVMTEQGRYGGYRLVAG 66

Query: 69  AGSEMQMVPDVLIFAHRSG---------------LAGLFPGLDRRLVNALLMCDE--SPC 111
                 M  D    A   G               +A +   L+R +   L       S  
Sbjct: 67  FKLPPMMFTDEETLAVSLGLLAARQLGLADAAPAIASVQAKLERVMPADLKKRVRGVSDT 126

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167
                          +   L  A    R V         G     + P  L+  Q  WYL
Sbjct: 127 TRVILPRGEPSLDDRALQNLTVATEAMRSVGFTYHSPEHGGIDRSVDPYGLVFRQGRWYL 186

Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCR--LVEDPVFIQALPH 214
                    +  F LD I  +  L  TF+R         + +        H
Sbjct: 187 TGFCHLRQAMRSFRLDRISHVHLLTATFQRPPDFDAADFLSESFLSWGRTH 237


>UniRef50_A7VYA2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753
           RepID=A7VYA2_9CLOT
          Length = 304

 Score =  131 bits (330), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 68/212 (32%), Gaps = 18/212 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  I+  L+ GET++   LA    VS RT+ RD          +Y+      G   L  
Sbjct: 5   RLFEILYLLMEGETVTASALARRLEVSPRTIYRDVEALSGAGIPIYMTKGRGGGIRLLPD 64

Query: 69  AGSEMQMVPDVLIFAHRSGLA------GLFPGLDRRLVNALLMCDESPCVIAPANPVPS- 121
              E  +            L       GL        + AL     +  +    +     
Sbjct: 65  FVLEKSLFSHQEQDEILYALQSLAVTGGLQDKTVLSRMRALFQRTPADWIDVDFSGWGHG 124

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGHI 175
           P     F R+ QA+   R ++             R+ P +L      WY+      +  +
Sbjct: 125 PQEREKFLRIKQAVLESRVLSFTYYSTCGQTTNRRIEPMKLRFRGSAWYVHGFCLEKQEL 184

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207
            VF +  +  I   +E F R       +E+  
Sbjct: 185 RVFKVSRMEGISVTEEAFDRRALELPPLEEES 216


>UniRef50_B8FW42 Helix-turn-helix type 11 domain protein n=3 Tax=Clostridiales
           RepID=B8FW42_DESHD
          Length = 298

 Score =  131 bits (330), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 18/199 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-----LMYLDLEYQSGYCRLRT 68
           RL  II  L+   T++  +LA  F VS RT+ RD          +Y+      G   L  
Sbjct: 5   RLFEIIYILLENRTITAAELAERFEVSARTIYRDVEILAQGGMPIYMSKGKGGGISLLPD 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRL--VNALLMCDESPCVIAPANPVPS- 121
                 ++ +       S L           +  L  + ++L    +  +    +     
Sbjct: 65  FILNKAVLTEEEKSEILSSLQAFNAVNLSKSETALSKLTSMLGAKNTDWIEVDFSSWGHF 124

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEH--EGHI 175
            +    F  +  AI  ++ +T +    +       + P +L+     WYL          
Sbjct: 125 ENDRAYFENIKTAIIEKKIITFMYASGKAEKLLREVLPLKLVFKGAAWYLYGYCTLRRDY 184

Query: 176 AVFTLDEIHLIQPLQETFR 194
             F L  I  +      F 
Sbjct: 185 RFFKLRRITELAVTDTGFE 203


>UniRef50_C7NAI6 Helix-turn-helix type 11 domain protein n=3 Tax=Leptotrichia
           RepID=C7NAI6_LEPBD
          Length = 299

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 16/200 (8%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL----EYQSGYCRLR 67
            RL  I+  L+  +T++ +KL+  F VS+RT+ RD        + +        G   L 
Sbjct: 4   DRLFQIVLILLNKKTITAKKLSEHFNVSIRTIYRDIEALSFAGIPIYSLRGKNGGIRLLE 63

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVN-ALLMCDESPCVIAPANPVPSP 122
           +   +  ++           L  L    +P +D  L    L+    S   I         
Sbjct: 64  SYILDKSLLSSKEQNEILYALESLKASNYPDVDEVLKKLNLIFNKSSDDWIEVDFSRYGS 123

Query: 123 SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGHIA 176
           +    F  + +AI   + V               + P ++   ++ WYL A    +  I 
Sbjct: 124 NDNTLFNNIKKAILNSQAVKFTYFNTNGETSQRTVNPLKIWFKEKAWYLFAYCQKKNEIR 183

Query: 177 VFTLDEIHLIQPLQETFRRN 196
            F ++ I  +    E F R 
Sbjct: 184 QFKINRIKNLTLTNEYFERR 203


>UniRef50_Q8F269 Transcription regulator n=2 Tax=Leptospira interrogans
           RepID=Q8F269_LEPIN
          Length = 317

 Score =  131 bits (329), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 30/240 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL-----------DLEY 59
            A RL  I+ +L A   +S R LA +  VS RT+ RD                     E 
Sbjct: 2   RADRLLSILLQLQAKGRISSRDLAKKLEVSERTIHRDMEALSASGIPVFAERGSKGGWEL 61

Query: 60  QSGYCRLRTAGSEMQMVPDVL----IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
             GY    T   + ++   +L      A   G          + + +L    +    +  
Sbjct: 62  SEGYRTNLTGMKKEEIFSMILTSSTRIASDLGRKKDLDSALMKFMASLPPAYQKEAEMVR 121

Query: 116 ANPVPSPSGALSFWR-------LIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTW 165
                  +G             + +A+   +++ L  +     +   ++P  L+   + W
Sbjct: 122 QRIYVDGAGWSCSEEELPFLSLIQEAVWQGKKIVLRYKTDEESKKRNVSPLGLVAKGKIW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFRFIQHS 221
           YLVA++E     F +  I   + L ++F R       +  +D    F+  +P +      
Sbjct: 182 YLVAKYEKEFRTFRVSRIVEAK-LGDSFERPKRFDLEKYWKDSTQNFLSKIPSYPVRFKI 240


>UniRef50_B1HUW4 YobV n=2 Tax=Bacillaceae RepID=B1HUW4_LYSSC
          Length = 308

 Score =  131 bits (329), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 68/223 (30%), Gaps = 23/223 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
              RL  +I  L+  + ++ ++LA  F VSVRT+ RD        + +  Q G     + 
Sbjct: 2   KLERLLTMIMILINRKKVTAQELAELFNVSVRTIYRDIETLSCAGIPVISQQGVHGGISL 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCVIAPA-- 116
               ++   VL     + L                      + ++     +  +      
Sbjct: 62  IDGYRVDKQVLTKEELASLTIAIKSALTTYEDSHALAVLEKLTSIADDHVTQTIDHLFVD 121

Query: 117 --NPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE 170
                P+         L  AI  R  V+              + P  ++   +TWYL   
Sbjct: 122 LSPWGPNILFKEHITSLKSAIENRHCVSFTYTTAHGELTKRVVEPHTIVQKGKTWYLYGY 181

Query: 171 HEGH--IAVFTLDEIHLIQPLQETFRRND-SLCRLVEDPVFIQ 210
                   +F L  I  +      F R + +L  L     + Q
Sbjct: 182 CTLRMDFRLFKLARIKNLMQEDLHFERKEINLSELPWGKEWYQ 224


>UniRef50_B9YCC8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9YCC8_9FIRM
          Length = 305

 Score =  131 bits (329), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 69/209 (33%), Gaps = 18/209 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTAGSE 72
           R   I+  L+  + ++ ++LA  F VSVRT+ RD        + +  + G          
Sbjct: 5   RCFEIVYLLLERKKITAQELADRFEVSVRTIYRDLDFLSQAGIPIYARRGKDGGIELWDT 64

Query: 73  MQMVPDVLIFAHRSGLAGLFPGLDR----------RLVNALLMCDESPCVIAPANPVPSP 122
             +   V   A +  L  L  GL            + V+ALL       + A  +     
Sbjct: 65  FVLNKTVFSEAEKQELTALLEGLRSTGVQEETQVLQKVSALLGQPRQSWIEADFSLWSKT 124

Query: 123 SG-ALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGHI 175
           +     F  L  AI  RR +     G         + P RL+   Q WY           
Sbjct: 125 ADQPDLFSLLRHAICNRRCIQFDYYGLNREATHRIVEPLRLVFKAQAWYCYGWCTLREEE 184

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVE 204
             F +  +  +  L E+F        ++ 
Sbjct: 185 RFFKIVRMREVVELDESFEPRPLPDTILT 213


>UniRef50_D1PN27 Transcriptional regulator, DeoR family n=3 Tax=Clostridiales
           RepID=D1PN27_9FIRM
          Length = 303

 Score =  131 bits (328), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 75/237 (31%), Gaps = 26/237 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
              RL  I+S L+  E ++  +LA +F VS RT++RD        + +    G     + 
Sbjct: 2   KMDRLIGILSILLQREQVTAPELAEQFEVSRRTIQRDIEALGRAGIPITTAQGAGGGISI 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDR--------RLVNALLMCDES-----PCVIAPA 116
               ++   VL       +      LD         +L+  L   + +       ++   
Sbjct: 62  IEGYRVDRTVLTAPEMQAILAGLRSLDSVSGTRRYAQLMEKLSAGNSTLISGGTHMLIDL 121

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEH-- 171
           +     S A     +  A+     V       +G     +    L+ H  TWYL      
Sbjct: 122 SSWYKSSLAPKIEAIQNAMEQHHLVHFTYDAPKGTSVRSVESYYLVFHWSTWYLWGWCQT 181

Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228
                +F L+ +  +    + F    +    ++          +       + F PA
Sbjct: 182 RQDFRLFKLNRMTNLS-TGDPFTPRPAPLPDLDPERI------YPTQYQVCVRFTPA 231


>UniRef50_B0N590 Putative uncharacterized protein n=2 Tax=Bacteria
           RepID=B0N590_9FIRM
          Length = 304

 Score =  130 bits (327), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 24/231 (10%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL   I  L+  +  + ++LA  F VS RT+ RD    +     +Y +   + G      
Sbjct: 5   RLFETIYYLIEHKQTTAKELAEHFEVSTRTIYRDLDRLIVAGFPIYANQGAKGGIYIDSE 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDR------RLVNALLMCDESPCVIAPANPV-PS 121
              +     D         L  +    DR        + AL   ++   +         +
Sbjct: 65  FVLDKMTFSDDEQNQILMALQCIERLQDRDEAGLIDKMAALFNKNKLDWIEVDFTTWHHN 124

Query: 122 PSGALSFWRLIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWYLVAEHEGH--I 175
            S    F  + +AI  ++ +          +    + P +L     TWYL          
Sbjct: 125 NSQNEKFETIKKAIFEQKEIKFKYINSYGEKSQRCVFPNKLFFKANTWYLQGYCLQKNSY 184

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH-FRFIQHSLLTF 225
            VF L  I  +      F+        +  P  I  +P+        +L F
Sbjct: 185 RVFRLTRIIELLTTSNYFQ-----LEEIALPPKINKIPNLNTPRIKVILKF 230


>UniRef50_C9XKH2 DeoR-family transcriptional regulator n=4 Tax=Clostridium difficile
           RepID=C9XKH2_CLODC
          Length = 303

 Score =  130 bits (327), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 19/202 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTAGSE 72
           RL+ II  L+  + ++ ++LA  F VS RT+ RD     +  + +    G     +   E
Sbjct: 5   RLTEIIVILLNKKLVTAKELADRFEVSTRTIYRDIETLSMSGVPVYMTKGKGGGISLIEE 64

Query: 73  MQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL------------LMCDESPCVIAPANPVP 120
             +   +L    +  L      L       +                 +   I       
Sbjct: 65  YSIDKAILSKKDKESLIVALKTLQATKYPEINSVVNKIGSIFGEQNFSNWIEIDFTEWGS 124

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGH 174
           + +    F ++ +AI  R  +          +    + P +L+   +TWYL      +  
Sbjct: 125 NFNEDDKFTKIKEAILRRNTINFNYVNSLSSQTNRTVEPLKLMYKSKTWYLYGFCKLKDD 184

Query: 175 IAVFTLDEIHLIQPLQETFRRN 196
             +F +  I  +    E F R 
Sbjct: 185 FRIFRISRIRNLSIKDEVFSRK 206


>UniRef50_B0MGX9 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=B0MGX9_9FIRM
          Length = 308

 Score =  130 bits (326), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 74/236 (31%), Gaps = 25/236 (10%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67
            RL  I+  L+     +  +LA++F VSVRT+ RD          +Y       G     
Sbjct: 7   SRLFKILYYLLEKGQATAPELASKFEVSVRTIYRDIDVMSSAGIPVYAAAGRDGGIKLYD 66

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------VNALLMCDESPCVIAPANPVPS 121
                  ++ +  I     GL  L              + AL     +  +    +   +
Sbjct: 67  DFIISKALLSESDIQDIFIGLQSLSAAQYSDHEGTLEKLGALFKKTNTDWIEIDFSRWGA 126

Query: 122 PSGALS--FWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEH--EG 173
                   F  L  ++  R+ +              R  P +LL   ++WYL        
Sbjct: 127 CVQKEHEIFSLLKISVLKRQEIVFCYYNSRGEVSERRCRPIKLLYKDRSWYLFGFCCKRN 186

Query: 174 HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPAD 229
              +F +  +  ++  +  F        +  D + I  LP    + + +    P D
Sbjct: 187 DYRLFRVSRMRSLKLTEVMF------DEIPHDNLNILPLPEDMEVLNEIELRFPLD 236


>UniRef50_A4FF91 DeoR-family transcriptional regulator n=17 Tax=Bacteria
           RepID=A4FF91_SACEN
          Length = 337

 Score =  129 bits (325), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 69/230 (30%), Gaps = 29/230 (12%)

Query: 27  TLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRTAGSEMQMVPDVLI 81
             S  +LA   GVS RT+RRD  +       + + +    GY     A     ++ D   
Sbjct: 20  EWSGAELAERLGVSARTVRRDVDKLRGLDYPISVGMGRAGGYRLGAGARLPPLLLDDDEA 79

Query: 82  FAHRSGLA---------------GLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126
            A   GL                     L++ L + L    E+  V     P      A 
Sbjct: 80  VAVAVGLRTATGSGVAGVGETALRALVKLEQVLPDRLWRRIEALQVSTVEAPGAPSVDAG 139

Query: 127 SFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGHIAVFTL 180
               +  A   R+R+                 P +L+   + WYLVA          F +
Sbjct: 140 ELTAVATACRDRQRLRFDYRSHDGQETPRVTEPHQLVTWGRRWYLVAWDLERQDWRTFRV 199

Query: 181 DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADS 230
           D +    P    F   D              +      Q ++   VPADS
Sbjct: 200 DRMRTRVPTGPRFAPRDMPDAA---AFVASGVARAWPYQATVRLAVPADS 246


>UniRef50_UPI0001789548 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001789548
          Length = 317

 Score =  129 bits (325), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 84/235 (35%), Gaps = 29/235 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL---EYQSGYCRL 66
            A RL  I+  L  G   + R LA +  VS RT+ RD        + +       G   L
Sbjct: 2   RADRLLSIMLMLQNGGKKNTRYLAEQLEVSERTIIRDMESLSSAGIPVYAERGSQGGWVL 61

Query: 67  RTAGSEMQ--MVPDVLIFAHR---------SGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
             +       M PD LI              G+   F    ++L+ +          I  
Sbjct: 62  EESYRTNLTGMTPDELISLLVSSHSPLIGDLGIRKQFDAAYQKLLASSPRSIRQDAEIIR 121

Query: 116 ANPVPSPSGALSF-------WRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTW 165
                  +G  S+         L +A+   R + +     E R   R+ P  L+  + TW
Sbjct: 122 EKIHIDGAGWHSYRESHPYLTVLQEALWLDRIMDIQYMKGEERVERRIHPLGLVAKRSTW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC--RLVEDP--VFIQALPHFR 216
           Y+VAE +G +  + +  I      ++TF+R          E+    F+Q LP + 
Sbjct: 182 YVVAESQGELRTYRVSRIVDAVMSEDTFQRPAGFNLAEYWEESLARFMQNLPQYP 236


>UniRef50_Q73PY5 Transcriptional regulator, putative n=1 Tax=Treponema denticola
           RepID=Q73PY5_TREDE
          Length = 301

 Score =  129 bits (325), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 16/211 (7%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            + RL  I+  L++ +  + ++LA +FGVSVRT+ RD          +Y       G   
Sbjct: 2   RSERLFEIVFILLSRKQTTAQELAKKFGVSVRTIYRDMDILSSAGIPVYTMQGTGGGIFI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL-----LMCDESPCVIAPANPVP 120
             +      ++           L  L P  +    + L     +    +  +    +   
Sbjct: 62  DESYTINKSILTKGEQEKILLALQCLSPIDEIHTESILNRLSAIFQKNADWIRIDYSRWD 121

Query: 121 SPSGALSFWRLIQAITGRRRVTLI----AEGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174
           + +    F  L  AI  RR V L        +    + P RLL   + WY          
Sbjct: 122 NKNDHHLFKTLKDAILERRAVKLEYLSSYGEKTERTVYPLRLLYKSKAWYAECYCTEKNA 181

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
             +F L  I  I    +TF R D L ++ +D
Sbjct: 182 CRLFRLTRILSIIKTLKTFNRADLLGKIPDD 212


>UniRef50_C4FVK8 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271
           RepID=C4FVK8_9FIRM
          Length = 296

 Score =  129 bits (324), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 15/201 (7%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSGYC-R 65
            A RL  I+  L+A      R LA  F V+ RT+ RD  +   +      ++ Q G    
Sbjct: 2   KAGRLLGILHYLLAHGRTPARVLAQRFEVTERTILRDMDDLSEFGVPVYAIQGQGGGWEI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFP--GLDRRLVNALLMCDESPCVI--APANPVPS 121
            R       ++ +       + L       GL  +L        ++   +         S
Sbjct: 62  DRRYVLPAGLLQEQEQSQILAALEASQADDGLLDKLKAHFKGSQKADHWLLVDQTTWHQS 121

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGH--I 175
           P  +  F  L QAI  R  VT             ++ P RL++    WYL A        
Sbjct: 122 PHLSHDFDLLKQAILERHLVTFRYCSNQGIWSQRQVEPARLVLKHYRWYLYAWCRERQDF 181

Query: 176 AVFTLDEIHLIQPLQETFRRN 196
             F L  +  +Q L + F  +
Sbjct: 182 RYFKLSRMQDLQVLTQGFESD 202


>UniRef50_B8FUA6 Helix-turn-helix type 11 domain protein n=3 Tax=Clostridiales
           RepID=B8FUA6_DESHD
          Length = 302

 Score =  129 bits (324), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRL--- 66
              RL  II+ L+  E  ++ +LA  F VS RT++RD        + +  + GY      
Sbjct: 2   KIDRLIGIITILLQKERATIPQLAERFEVSCRTIQRDIDAIGQAGIPIVSRQGYGGGLSI 61

Query: 67  -RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMC---------DESPCVIAPA 116
                 +  ++    + A  +G+  +           L+            E   ++   
Sbjct: 62  ADGYKLDKTVLTKKELQAILTGIRSIDSISKTTYGQTLIEKFANGKAAVLAEQDMILIDL 121

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWYLVAEH-- 171
                 S +    +L QAI  R +V  +     G     + P  +L     WY+      
Sbjct: 122 ASWYQDSLSDKIEQLRQAIFNREKVFFVYYSDKGESERLIEPYLILFKWAAWYVYGYCLT 181

Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
           +    +F L+ +  ++    T+   +     +E   + Q 
Sbjct: 182 KNEYRLFKLNRLWKLKNTNLTYIPRNIPEGKLEFERYFQT 221


>UniRef50_B2PXB7 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PXB7_PROST
          Length = 286

 Score =  129 bits (324), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 12/196 (6%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEM 73
           RL+ II        +   +LA+ F VS RT+ RD     + L+ +  S Y          
Sbjct: 11  RLATIILEAYLYGEVDKYELASRFKVSERTIYRDLNSLNLILEHKGNSKY--------GF 62

Query: 74  QMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG---ALSFWR 130
             V +        G+    P   +  + ++    ++  V+   N +           + R
Sbjct: 63  STVVEYYKMISFFGIDKYLPDFSQSFLKSIPETIQNRSVLIKFNGIEHKIKSYLKTHYER 122

Query: 131 LIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQ 190
           +  AI  +R   ++ + +    + P +L+ H   WYL A  EG +  F+L+ I  +   +
Sbjct: 123 IRYAIDNKRECHILYKSKN-RTIYPYKLICHNTIWYLNAIEEGKLKSFSLNRIEWLDVSK 181

Query: 191 ETFRRNDSLCRLVEDP 206
           +TF  ++++  ++ + 
Sbjct: 182 KTFLPDNNIVNMLMES 197


>UniRef50_A4XCA7 Helix-turn-helix, type 11 domain protein n=7 Tax=Actinomycetales
           RepID=A4XCA7_SALTO
          Length = 332

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 25/222 (11%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLE 58
             +  D    RL  ++  L A   ++  +LA E GVS RT+ RD           Y +  
Sbjct: 5   TAKMADVRMSRLFSMVLLLQARGAMTAAELAGEVGVSERTVYRDIIALAAAGVPVYAEQG 64

Query: 59  YQSGYCRLRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMCDE 108
              GY  +    + +  +      A             GL  +      ++  AL     
Sbjct: 65  RHGGYRLVDGYRTRLTGLSRAEAEALFLLGLYGPARDMGLGDVLATAQLKVSAALPAELR 124

Query: 109 S-------PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC--ERLA-PCRL 158
                      +             +   L++A+     V L           +  P  +
Sbjct: 125 DAAAQAAQRFHLDVPGWFHDSDPPPALSVLVRAVWQDLTVILRYHRHDEVTRTVQQPYGV 184

Query: 159 LIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           ++    WYLVA     + V+ +D +  ++   + F R +S  
Sbjct: 185 VLKAGIWYLVARVGADLRVYRVDRVVGVEVTDQRFVREESFD 226


>UniRef50_A4TX58 Transcriptional regulator n=2 Tax=Proteobacteria RepID=A4TX58_9PROT
          Length = 229

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 60/207 (28%), Gaps = 23/207 (11%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEY--QSGYCRL 66
           R A RL  I+  L  G   + R+LA    VS RT+ RD        + ++    +GY   
Sbjct: 2   RRAERLFQIVQALRGGRLTTARQLAERLEVSDRTIYRDIAHLAASGVPIDGAAGAGYMLR 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL--------------LMCDESPCV 112
                   M     I A   G          RL  A               L        
Sbjct: 62  DGFDIPPLMFDGAEIEALVIGARMAQAWAGTRLGQAAGLALAKIEAVIPDPLRQRMEASR 121

Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLV 168
           +   +    PS      ++  AI  R+ +               + P  L      W LV
Sbjct: 122 LFAPDFRSPPSTRAHLDQVHTAIDSRQLLRFDYVREDGTASTRTVRPLGLFFWGPVWTLV 181

Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETF 193
           A          F LD +    P  ++F
Sbjct: 182 AWCGLRDDFRTFRLDRMTDPAPTGQSF 208


>UniRef50_C6D7L1 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6D7L1_PAESJ
          Length = 320

 Score =  128 bits (322), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 27/225 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65
              RL  I   L+  + +  ++LA +  VS+RT+ RD        + +      + GY  
Sbjct: 2   KLERLMAITILLLNRKRVQAQELAEQLEVSLRTIYRDLDSLGQAGIPIVSYTGMEGGYEI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGL-----FPGLDRRLVNALLMCDESPC--------- 111
           + +   + Q++    + A  + L GL     +   +  L+ + +    +           
Sbjct: 62  MDSFRLDRQLLSFDELTALFTALRGLESTNAYDRSNMDLLLSKVGAMVAQAEQGRTGEGD 121

Query: 112 --VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTW 165
              +       S      + +L QA+  R+ +      R        + P  L++    W
Sbjct: 122 RIQVDFTPWKNSEEDQARYDQLRQAVNDRKLIRFHYTSRTGGEQEREIEPMALVLKNYAW 181

Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVF 208
           YL           +F L  I  +     TF R       + D   
Sbjct: 182 YLHGYCRLREDYRIFKLTRIRQLSIQAGTFTRRTESLEQLNDRWN 226


>UniRef50_A3CLQ0 Transcriptional regulator, putative n=3 Tax=Streptococcus
           RepID=A3CLQ0_STRSV
          Length = 299

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 18/219 (8%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL----EYQSGYCRLR 67
            RL  I+  L+     +  +LA+ F VS+RT+ RD  +  L+ + +        G   ++
Sbjct: 4   SRLFKILYLLLEQGRTTAPELASLFEVSIRTIYRDVDKLSLVGIPIYCNPGKGGGIFLMK 63

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLF------PGLDRRLVNALLMCDESPCVIAPANPVPS 121
               +  +  +       + L GL              + +L     +  +         
Sbjct: 64  DFVLDKALFSESERDELLAALQGLQILTDGEQVETLSKLQSLFQVQATSWLEVDFTDWRK 123

Query: 122 PSG-ALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174
            +     F  + QAI  RR ++         R   ++   +L+   Q WY+         
Sbjct: 124 KADQKELFDTIKQAILQRRVLSFSYLNGRGEREQRKIEALKLVFKSQNWYVAGFCRLRQA 183

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
              F L  +   Q L+E F++     +   +     A+ 
Sbjct: 184 PRFFKLSRMRDCQMLEERFKQRVLDEKFSPEEWLGDAVK 222


>UniRef50_C6CRF1 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6CRF1_PAESJ
          Length = 302

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 61/210 (29%), Gaps = 20/210 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  II +L+  + L    LA EF VS RT+ RD          +    G       
Sbjct: 2   KLERLISIIYKLLNNDVLPANALAEEFQVSQRTIYRDIDVICAAGFPVVSYQGNKGGFGM 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCVIAPANP 118
               +M   +L     + L  +  GL               +  +     +P +      
Sbjct: 62  LEGFKMDKSLLGSYDVNALVTVLKGLSTVFEDERAQGTIERLQTVGTEQRTPSLAVDFET 121

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174
               S   +   L  AIT R+ +          R    L P RL     +WY+       
Sbjct: 122 RR--SDPETLPLLRAAITERKVIRFDYINAKNERTTRELEPVRLHFKYGSWYIYGYCLTR 179

Query: 175 I--AVFTLDEIHLIQPLQETFRRNDSLCRL 202
                F L  +      +  F  +  +   
Sbjct: 180 CDYREFRLSRMVEALQTERCFEPHKEVPEE 209


>UniRef50_C9NKS1 Helix-turn-helix type 11 domain protein n=5 Tax=Streptomyces
           RepID=C9NKS1_9ACTO
          Length = 348

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 67/215 (31%), Gaps = 25/215 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL  ++  L +  +++  +LA E  VS RT+ RD +        +Y D     GY  
Sbjct: 29  RAARLIKMVLLLQSRPSMTAAELARELEVSARTVTRDAQALSEAGVPVYADRGRAGGYRL 88

Query: 66  LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRL-------VNALLMCDE 108
           +    + +  +      A             GL         ++       +        
Sbjct: 89  VGGYRTGLTGLARHEAEALFLSGLPSALREMGLDDAASVARLKVSAALLPSLRDAPRTAS 148

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR---CERLAPCRLLIHQQTW 165
               +        P+       + +A+   R V              LAP  L++    W
Sbjct: 149 QRFHLDAPGWYHDPATPELLPAVAEAVWDDRLVRARYRRTSGEVERELAPYGLVLKAGVW 208

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           YL A     + V+ +D    +   +  F R++   
Sbjct: 209 YLCARAGKDVRVYRIDRFTAVAVSETRFVRDEEFD 243


>UniRef50_C5EHW4 Helix-turn-helix type 11 domain-containing protein n=5
           Tax=Clostridiales RepID=C5EHW4_9FIRM
          Length = 309

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 19/205 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  I+S L+  E ++   LA +F VS RT+ RD  +     + +    G     + 
Sbjct: 2   KIDRLIGILSVLLQKEKVTAPYLADKFEVSRRTINRDIEDICKAGIPIVTTRGVNGGISI 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLD--------RRLVNALLMCDE-----SPCVIAPA 116
               +M   +L       +      LD        R+L++ L + +         ++   
Sbjct: 62  MEGYRMDKTLLTSREMQSILAGLRSLDSVSFTGQYRQLMDKLSVGNHDLIHVDSHIMINL 121

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAEH-- 171
           +     +         +AI   R          G     + P  L+    +WY+      
Sbjct: 122 SSWYKETLTPKIHLFQEAIEECRLTRFSYFSPSGETSRCIEPYTLVFQWSSWYVWGYCCL 181

Query: 172 EGHIAVFTLDEIHLIQPLQETFRRN 196
                +F L+ +  ++  QE F + 
Sbjct: 182 REDYRMFKLNRMADLELCQEHFTKR 206


>UniRef50_D0MGR2 Helix-turn-helix type 11 domain protein n=1 Tax=Rhodothermus
           marinus DSM 4252 RepID=D0MGR2_RHOM4
          Length = 336

 Score =  127 bits (320), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 73/232 (31%), Gaps = 34/232 (14%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER---LMYLDL 57
           M  AER  +R   RL  +I  L     L+ R+LA  FGVS RT+ RD R      + L  
Sbjct: 1   MKLAERTRNR-TERLFALILLLQTRPGLTARQLAEHFGVSRRTIFRDLRALSEANVPLTY 59

Query: 58  EYQSGYCRLRTAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGL 95
               GY  L        M           G                      +  + P  
Sbjct: 60  AEGGGYEILEGYQLPPLMFTAREAATLLIGTEFMKRQPDASLRADADAVALKIRSVLPRS 119

Query: 96  DRRLVNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRC 150
            R  ++ L                 S   A  ++ L +AI  ++ V L            
Sbjct: 120 IREYIDRLQERIVIDPY-WLQTMQGSDEEAGYWYELSEAIARQQSVHLEYYVPSRDELTQ 178

Query: 151 ERLAPCRLLIHQQTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLC 200
            R+ P  L+ +   W L+A       I  F LD I  +  L+E F       
Sbjct: 179 RRVDPLGLVYYTDHWNLIAYDHLRKDIRNFRLDRIQRLTVLRERFTPPRDFD 230


>UniRef50_A6LYP1 Helix-turn-helix, type 11 domain protein n=1 Tax=Clostridium
           beijerinckii NCIMB 8052 RepID=A6LYP1_CLOB8
          Length = 304

 Score =  127 bits (320), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 65/198 (32%), Gaps = 18/198 (9%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCRLR 67
            RL  II  L+  ++++ R+L+  F VSVRT+ RD        + +        G   + 
Sbjct: 4   SRLFQIIYILLKRKSITARELSEHFEVSVRTIYRDIDALCQAGIPIYSSQGKGGGISLVD 63

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------VNALLMCDESPCVIAPANPV-P 120
               +  +  +V        L  L       +      ++ L    +   +    +    
Sbjct: 64  KFIFDKSLFSEVEQDKILLALQSLSAVGYDDINDVLSKLSNLFQKSDVNWIEVDFSNWGS 123

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGH 174
                  F  + ++I  ++ +          +    + P +LL   + WYL         
Sbjct: 124 ERKQKEIFNLIKESILKQKVINFSYFSADGMKSNRYVEPFKLLFKDKAWYLQGYCLERTA 183

Query: 175 IAVFTLDEIHLIQPLQET 192
              F +  ++ I    E+
Sbjct: 184 FRTFKITRMNDINITDES 201


>UniRef50_B3PHR5 Predicted transcriptional regulator n=1 Tax=Cellvibrio japonicus
           Ueda107 RepID=B3PHR5_CELJU
          Length = 244

 Score =  127 bits (319), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 79/236 (33%), Gaps = 36/236 (15%)

Query: 11  LAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRL 66
            A RL  + + L    T L+ R+L+    VS RT+ RD +   L  + +E ++  GY   
Sbjct: 3   RAERLFQLTTLLRNRRTVLTARQLSEHLQVSERTIYRDIQSLSLSGVPIEGEAGVGYRLS 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGL---------------FPGLDRRLVNALLMCDESPC 111
                   M     + A   G   +                  +   L + L   DE+  
Sbjct: 63  HRYQLPPLMFDREEVEALLLGARMVSGWGDMDMARHANQAIQKILAVLPDHLRHSDETLP 122

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167
           ++ P               +  AI   +R+ +      E R    + P  L+   + W L
Sbjct: 123 LLVPNMEEVQRYYTAHSQTIRAAIRIHQRLRIDYIRADEERSSRVIEPLGLIFWGKVWTL 182

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHS 221
           VA          F LD I  +    ETF  ++            ++L HF  I  +
Sbjct: 183 VAWCQLREDYRTFRLDRIQSLDMTGETFATHEQ-----------KSLKHFLHIMKA 227


>UniRef50_D2PM08 Helix-turn-helix type 11 domain protein n=2 Tax=Actinomycetales
           RepID=D2PM08_9ACTO
          Length = 324

 Score =  127 bits (318), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 71/232 (30%), Gaps = 24/232 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER----LMYLDLEYQSGYCRL 66
            A RL   +  + A   ++  +LA+E  +SV T RRD        +       ++G   L
Sbjct: 2   RADRLVATLLLMQARGRVTAAELASELEISVATARRDLEALSTAGIPVYPQPGRNGGWSL 61

Query: 67  ---RTAGSEMQMVPDVLIFAHRSG----LAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119
                         +        G    +A       R+LV AL          A    V
Sbjct: 62  LGGARTDLSGLTATEAQALFLLVGPAAAIAPEAKAALRKLVRALPESFRGDAEAAAEAVV 121

Query: 120 PSPSGALSFWR--------LIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWY 166
             P+G     +        L  A+  R +V L   GR         + P  L+     WY
Sbjct: 122 IDPAGWGELDKARPVVVNDLQHAVVRRLKVRLSYAGRRGAPPSERLVDPLGLVAKDDVWY 181

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218
           L+A  E     F +D +           R D     V     +  +   R +
Sbjct: 182 LIAGTERGQRTFRVDRVLEATVTDRPAERPDDFDLSVAWARVVDEMEQNRSL 233


>UniRef50_C3L2F0 Transcription regulator n=4 Tax=Clostridium RepID=C3L2F0_CLOB6
          Length = 315

 Score =  127 bits (318), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 76/245 (31%), Gaps = 37/245 (15%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
            A RL  I+  L   + L+  +L+ +  VSVRT+ RD      + + +  + G       
Sbjct: 2   RADRLISILMLLQIYKKLTASELSKKLEVSVRTIYRDIDTLSGIGVPIVTEKGINGGIKL 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSFW 129
             + +     +       L   F     +++  L + +     I       SP+    F 
Sbjct: 62  LGDYKTSLTGINKNELLSL---FIPTGDKILEDLGVENLKDSTILKILGNSSPNDLKEFE 118

Query: 130 R--------------------------LIQAITGRRRVTLIAE---GRRCERLAPCRLLI 160
                                      L  AI   + + ++       +   L P  L+ 
Sbjct: 119 NIQNYIYIDMYTWNKPNNIVNTNILSILQNAIWNSKSLKILYRKIYETKEVELNPLGLVC 178

Query: 161 HQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFR 216
            + TWYLVA +   I  + +  I     + +TF R                F   +P + 
Sbjct: 179 KRGTWYLVAVNNRIIKTYKVTSIESALLMTDTFIRPYDFNLKSYWRNSTSNFKSLIPKYT 238

Query: 217 FIQHS 221
           F    
Sbjct: 239 FTFKV 243


>UniRef50_A8MEN8 Helix-turn-helix type 11 domain protein n=14 Tax=Bacteria
           RepID=A8MEN8_ALKOO
          Length = 299

 Score =  127 bits (318), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 20/208 (9%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  I+  ++    ++  +LA +F VSVRT+ RD          +Y       G      
Sbjct: 5   RLFRILYYILEKGKVTANELADKFEVSVRTIYRDMDSISSAGIPIYATQGKGGGIEIADE 64

Query: 69  AGSEMQMVPDVLIFAHRSGL------AGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
                 ++ +       + L      + L+       ++AL     +  +        + 
Sbjct: 65  FVLSKSLLTENEKEQIMAALHGLENTSKLYESELITKLSALFKMRNTNWIEIDFTNWQNN 124

Query: 123 SGALS-FWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGHI 175
                 F  +  AI  +  ++       E      + P RLL   Q WYL A        
Sbjct: 125 KIYEKIFNDIKSAIISKNIISFSYFSSNEEETNRSVKPVRLLFKGQDWYLYAFCLLREDF 184

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLV 203
             F L  I  ++ L   F   D    + 
Sbjct: 185 RYFKLSRIKQLEILSINFE--DDFDNIT 210


>UniRef50_A9AUR2 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AUR2_HERA2
          Length = 321

 Score =  126 bits (317), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 28/216 (12%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYC----RLR 67
            RL  ++  L + + +S  +LA    +  RT+RR  ++     + +E + G         
Sbjct: 6   SRLLGVLELLQSRQQISGSELAQRLEIHPRTVRRYIQQLQDMGIPVEAERGIYGAYRLKP 65

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGL---------------FPGLDRRLVNALLMCDE--SP 110
                  +  +  I A   GL  +                  ++R L   L+        
Sbjct: 66  GQRVPPLLFTEQEILALSLGLLTIRELQFPVERATAETTLAKIERVLPAGLVQHARALQA 125

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166
            +                 +L  A+   ++V L      +      + P  ++ ++  WY
Sbjct: 126 AISIQLGIRSPRIEPAWLLQLSLAVQYCQQVQLEYLSAQQNMTERTIEPYGIVFNEGAWY 185

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           LV        + VF LD I  ++ L   F R  S+ 
Sbjct: 186 LVGYCDLRRAMRVFRLDRIQAMRLLDSNFERPASID 221


>UniRef50_UPI0001789485 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001789485
          Length = 316

 Score =  126 bits (317), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 29/230 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCR 65
              RL  I   L+    LS ++LA  F VS +T+ RD        + +        G+  
Sbjct: 2   KIDRLLAITVLLLNRGRLSAKELADRFEVSSKTIYRDMDTLCQAGIPIVAHQGITGGFEI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES---------------- 109
           +     +   +    +    + + GL   L+   +  LL   ++                
Sbjct: 62  MEHYMIDKYWLSAEEMSTLVTAVKGLSSALEDPQMGMLLEKIKALLRRVEQGLGDEYRKE 121

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165
           P V+             +   L QAI  +RRV +             + P  L +    W
Sbjct: 122 PVVMDFQPWGQRQGLKPAVGLLKQAIHDKRRVQMEYIDAEGSAERRTIEPASLFLKGNVW 181

Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRN--DSLCRLVEDPVFIQA 211
           Y+ A         +F L  +  I+ L E +         RL  D  +  A
Sbjct: 182 YVQAFCLEREDFRLFRLSRMQDIKMLSEAYEPRPWPGKERLEWDSSWSNA 231


>UniRef50_C2U625 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillaceae
           RepID=C2U625_BACCE
          Length = 305

 Score =  126 bits (316), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 62/205 (30%), Gaps = 16/205 (7%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  II +L+  E LS   LA EF VS RT+ RD          +    G       
Sbjct: 2   KLERLLSIIYKLLNHEVLSASMLAEEFQVSQRTIYRDIDVICAAGFPVVSYQGSNGGYGM 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANP---------VP 120
               +M   +L     + L  +   L     +               +            
Sbjct: 62  MDGYKMDKSLLGSYDVNSLVTVLRSLSTVFEDKRAQGTIERLQTIGPDHHVTSLSVDLET 121

Query: 121 SPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH-- 174
             +   +  +L  +IT +  V          R    + P +L    + WY+         
Sbjct: 122 HRTEPDTLRQLRTSITQQNVVRFDYINAKNERTTRDMEPLKLHFKYRNWYIYGFCRTRRD 181

Query: 175 IAVFTLDEIHLIQPLQETFRRNDSL 199
              F L  +  +   QETF+ +  +
Sbjct: 182 YREFRLSRLMNLYVTQETFQPHHEV 206


>UniRef50_UPI0001BC6CCB transcriptional regulator, putative n=1 Tax=Vibrio parahaemolyticus
           AQ4037 RepID=UPI0001BC6CCB
          Length = 286

 Score =  126 bits (315), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 8/199 (4%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYC 64
             + ++LA+RL  I++RL  GE LS  +L A++ VS +TLRRDF ERL+   +   +   
Sbjct: 2   SDKSEKLALRLGDILTRLFMGEVLSPEQLVADYQVSEKTLRRDFNERLVNAPIIRTNEGY 61

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSG 124
           RL              +    +GL+ L P       N       +P +            
Sbjct: 62  RLDPVTRNNGNANTNKVLHD-TGLSALLP-------NHYKFNGHTPVLFKNPRSESIGKF 113

Query: 125 ALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIH 184
              F +L + IT    + L   G+  E   P RL+  +  W+L A +   +  + L  I 
Sbjct: 114 DALFRQLTEVITTHSVIDLTYNGKTFESAHPYRLVNDRGIWFLAATYCDQLHSYRLPNIS 173

Query: 185 LIQPLQETFRRNDSLCRLV 203
            I   ++ ++ +  +   +
Sbjct: 174 RIHRREDKYKPSQKVHEEI 192


>UniRef50_D2BDS4 DeoR family transcriptional regulator n=2 Tax=Actinomycetales
           RepID=D2BDS4_STRRD
          Length = 332

 Score =  126 bits (315), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67
            R+  ++  L   +  +  +LA   GV+ RT+RRD          ++       GY    
Sbjct: 13  ERVLTLLGLLQQRQVWTGPELADRLGVTPRTVRRDVERLRTLGYPVHASQGVGGGYQLGP 72

Query: 68  TAGSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRLVNALLMCDESPCV 112
                  ++ D    A    L                     LDR L   L     +   
Sbjct: 73  GQDLPPLLLDDEEAIATVVSLLAGAGGAVTGAGDAALRALTKLDRVLPTRLRHEVRALSG 132

Query: 113 IA-PANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIHQQTWYLV 168
                    +P        L +                     R+ P RL+  ++ WYL+
Sbjct: 133 SVESFGGGRTPVDPEVLMTLARVCRDEVEAGFGYPSGSEVRRRRVEPYRLVASERRWYLL 192

Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRN--DSLCRLVEDPVFIQALPHFRFIQHSLLT 224
           A          F +D +  +      F           V++ V  +  PH    Q   L 
Sbjct: 193 AYDLDRDDWRSFRVDRMTDVSARTWRFSPRAAPDAAPYVQEGVASRVYPH----QARFLV 248

Query: 225 FVPADS 230
             PAD+
Sbjct: 249 HAPADT 254


>UniRef50_C6PV47 Helix-turn-helix type 11 domain protein n=2 Tax=Bacteria
           RepID=C6PV47_9CLOT
          Length = 313

 Score =  126 bits (315), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 26/213 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCR 65
              RL  II  L+  + +S  +LA  F V++RT+ RD        + +        G   
Sbjct: 2   KIDRLVSIIMILLERKKISAPELAKMFEVNLRTIYRDIDTINQAGIPIITYRGANGGIGI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-RRLVNAL--------------LMCDESP 110
           +     E ++     I     GL  +   +  + L+N +              +    + 
Sbjct: 62  MEKYKIEKKLFTLSDITELLIGLKSIHSTISNQELLNTMAKLKGLVPKDELQQVEKKTNR 121

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWY 166
             I       +    LS  ++  AI     ++     R       ++ P RL++   +WY
Sbjct: 122 IKIDHTPWFGNKRIQLSLKKIKTAINKNSFISFKYFDRLGQKSERKIEPYRLVLKNSSWY 181

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197
           +           +F +  I  ++ L+ETF   +
Sbjct: 182 IQGYCTLREDFRIFEVSNISSLKVLEETFIPRE 214


>UniRef50_D2QLY3 Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale
           DSM 74 RepID=D2QLY3_9SPHI
          Length = 315

 Score =  125 bits (314), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 27/230 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG-YCRLRT 68
              RL+ I+  L     +  ++LA  FG+S+RT+ RD R      + +  ++G    L  
Sbjct: 3   RLDRLTAILIHLQTKRVIRAQELADRFGISLRTVYRDVRSLEEAGVPIGAEAGVGYFLTD 62

Query: 69  AGSEMQMVPDVLIFAHRSG-----------LAGLFPGLDRRLVNAL--LMCDESPCVIAP 115
                 M  +    A   G           +   F     ++ + L     +    + A 
Sbjct: 63  YNLPPVMFTNAEASALLLGGKLIEKWTDQSVRTEFESALYKIKSVLKRPDQEHLDSLEAH 122

Query: 116 ----ANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWY 166
                   P+  G  S  ++  AI  +  + L             R+ P  L  ++  W+
Sbjct: 123 INVAKPLYPTTEGEGSLNKIQHAIAQQHVLDLQYHSNYNNAETQRRVEPVGLYHYRMNWH 182

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSL-CRLVEDPVFIQALP 213
           L+A          F +D I  +    E F R + L  +   D V  Q LP
Sbjct: 183 LIAFCQIRQDYRDFRVDRIRQLTDTAERFSRREHLSLQEYLDRVGKQDLP 232


>UniRef50_A4W669 Regulatory protein, DeoR n=3 Tax=Enterobacteriaceae
           RepID=A4W669_ENT38
          Length = 303

 Score =  125 bits (314), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 70/209 (33%), Gaps = 7/209 (3%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           MT   R   R A RL  I+  L     +    L  +F ++ RT+ RD       +     
Sbjct: 1   MTTPARS--RSAERLVDILMELHINGVVHRSDLMQKFKITERTVYRDLNALSPIV-QHAG 57

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
           +G  RL  A    +        A+       FP         L    E   ++   N   
Sbjct: 58  NGQYRLIHATPSSRGQGLHNAVANLLNADSFFPDRGAAFWQNLESRVEENHILILNNDAE 117

Query: 121 SPSGAL---SFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAV 177
                        + ++I  R    +  + +    + P +L+  +  WYL A   G +  
Sbjct: 118 HTVQKDIRLYLTAIEKSIKNRHVCQITYKDKT-RSVNPYKLINKKNIWYLQATENGRLKS 176

Query: 178 FTLDEIHLIQPLQETFRRNDSLCRLVEDP 206
           F+L +I      +ETF  +     L+E  
Sbjct: 177 FSLSQISWFDIQKETFILDPHTQELLEKN 205


>UniRef50_D2QV53 Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale
           DSM 74 RepID=D2QV53_9SPHI
          Length = 324

 Score =  125 bits (313), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 78/253 (30%), Gaps = 28/253 (11%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ-- 60
            +    RL+ RL  +++ L     ++  +LA  F VS RT+ RD R      + +     
Sbjct: 2   NDSETTRLS-RLVALLTLLQTKRMVTATELANRFSVSTRTIYRDIRALESGGVPIVTHEG 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSG----------LAGLFPGLDRRLVNALLMCDESP 110
            GY  L        +       A  +                 G     +   L   +  
Sbjct: 61  KGYSLLEGYRLPPILFTREEAIALLTAEKLASRLTDAATAQLSGAAMDKLRTALRHSDRD 120

Query: 111 CV------IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLL 159
            +      I    P  +     ++ +L+ A+T  R V +  +           + P  L 
Sbjct: 121 YLETMAPRILVMEPASASERPNTYQQLVTAVTAHRVVRITYQAAETGESTDREIEPIGLY 180

Query: 160 IHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRF 217
           + Q  W++VA          F LD I  +  + E+F       +        +       
Sbjct: 181 LSQ-HWHVVAFCRLRQAFRNFRLDRISSLALVDESFPARTETLQQYWTEEAKRREKEKVV 239

Query: 218 IQHSLLTFVPADS 230
           I  +    +PA  
Sbjct: 240 IHFNPSAVLPAQV 252


>UniRef50_C5REL4 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5REL4_CLOCL
          Length = 304

 Score =  125 bits (313), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 20/207 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
              RL  I+  ++  E ++ ++LA  + VSVRT++RD          +Y +     GY  
Sbjct: 2   KIDRLFSILLMIINKEKITAKELAEHYQVSVRTIQRDIDTLSMAGIPIYAESGKNGGYQL 61

Query: 66  LRTAGSEMQMVPDVLIFA---HRSGLAGLFPGLDRRLVN------ALLMCDESPCVIAPA 116
           L     +M  +              L  + P LD + ++       LL   ++  ++   
Sbjct: 62  LEGYKLDMNFLNTKEAKIIRAILDNLEKIAPYLDMKTISNKFSSTHLLDNQDNKLIMKLN 121

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEH- 171
             +   +       + +A     ++ +             + P  L++    WY+     
Sbjct: 122 PLINEENLKKHLELIAKARDNYHKICMKYVDMNFQVTDRIICPYTLVMMGTVWYVYGYCE 181

Query: 172 -EGHIAVFTLDEIHLIQPLQETFRRND 197
                 +F L  I     L E F   +
Sbjct: 182 LREDFRIFKLSRIIECIILNEEFVVKE 208


>UniRef50_UPI0001BC5E8A helix-turn-helix, type 11 domain-containing protein n=1
           Tax=Fusobacterium ulcerans ATCC 49185
           RepID=UPI0001BC5E8A
          Length = 303

 Score =  124 bits (312), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 18/202 (8%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRT 68
           RL  ++  L+  + ++ ++LA  F VSVRT+ RD          +Y       G    + 
Sbjct: 5   RLFEMLYILINRKHITAKELALHFEVSVRTIYRDIDILCSSGIPVYTSQGSGGGIFIEKN 64

Query: 69  AGSEMQMVPDVLIFAHRSGLA---GLFPGLDRRLVNALLMCDESPCV----IAPANPVPS 121
                 +  D       + L     L    + +L++ L    +   +    I  +    S
Sbjct: 65  YVLNNSVFTDEEQEKIITSLQSIPSLNATDNSKLISKLSGLFKKNYLNWIEIDFSRWGDS 124

Query: 122 PSGALSFWRLIQAITGRRRVTL----IAEGRRCERLAPCRLLIHQQTWYLVAEHEGH--I 175
                ++  +  +I G   ++             ++ P +L     +WYL          
Sbjct: 125 DHDNQNYILIKNSIIGHTIISFAYISSYGEVTLRKICPVKLFFKSSSWYLQGFCLDKKDY 184

Query: 176 AVFTLDEIHLIQPLQETFRRND 197
             F +  +  ++   E F  N+
Sbjct: 185 RTFKISRMSSLKASPEIFNINE 206


>UniRef50_B8DCU5 HTH domain family n=6 Tax=Listeria monocytogenes RepID=B8DCU5_LISMH
          Length = 318

 Score =  124 bits (310), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 22/216 (10%)

Query: 4   AERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG 62
             +       RL  II  L+  E +S  ++A  F VS RT+ RD     +  + +   +G
Sbjct: 7   KTKEKKMKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAMANIPIYTIAG 66

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPC 111
                      ++   +L     + +     G+++ L           +  +L     P 
Sbjct: 67  TKGGIGIMPTYKVDKKLLTVDDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPP 126

Query: 112 ----VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQ 163
                +  +N             L  AI   + V L        +   +  P  LL   +
Sbjct: 127 KSSISLDFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQTIRKTEPYHLLFRNR 186

Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197
           +WYL            F +  I  ++ L+ETF    
Sbjct: 187 SWYLQGYSLERSDFRTFKMSRIVELKTLEETFEARP 222


>UniRef50_Q73PA8 Transcriptional regulator, putative n=2 Tax=Bacteria
           RepID=Q73PA8_TREDE
          Length = 306

 Score =  124 bits (310), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 76/241 (31%), Gaps = 24/241 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCR---- 65
              R+  II  L+  E +S + LA  F VSVRT++RD        + +    G       
Sbjct: 2   KFERILEIIIYLLNHEKVSAKYLAEYFDVSVRTIQRDMVSIAEAGIPVYTLGGRYGGYAV 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDE--------SPCVIAPAN 117
           L     +   + +       S L  L        +N+L+                   + 
Sbjct: 62  LENYKIKNINIKNSEQQIIISALESLATSYTNDKLNSLIEKYNAIIEKEGGQKVFWDFSV 121

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--H 171
              +     S   L +AI G+  +                 P  +      WYL A    
Sbjct: 122 TKENKKVQDSNMLLEKAIGGKNYIVFDYRNSEGKSSHVCAEPLAIHYKWYAWYLFAYPKE 181

Query: 172 EGHIAVFTLDEIHLIQPLQET-FRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADS 230
                 F +  +  +   +E  F ++  + + +++      L +++   +  + F   + 
Sbjct: 182 TKEYRTFKVARMQNLVISKERSFIKHGDIQQKMKEAE----LAYYKTCINIEIIFSEKEI 237

Query: 231 P 231
           P
Sbjct: 238 P 238


>UniRef50_B2A042 Helix-turn-helix type 11 domain protein n=1 Tax=Opitutus terrae
           PB90-1 RepID=B2A042_OPITP
          Length = 316

 Score =  124 bits (310), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 68/224 (30%), Gaps = 36/224 (16%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRLR 67
              RL  ++  L     +   +LA  F V++RT+ RD        + +  ++  GY  +R
Sbjct: 3   RTDRLVAMVMYLQGRRVVKAEELARHFEVNIRTIYRDVAALGEAGVPVAGEAGVGYSLVR 62

Query: 68  TAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGLDRRLVNALLM 105
                  M       A   G                      +  + P   +  +  L  
Sbjct: 63  GYHLPPVMFTAEEAIALFIGGEMVKQFADASLTGPMDSAVLKIRSVLPRERQDDLERLTR 122

Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLI 160
                  I  +  + +     +   + QAI   R + +   GR         + P  +  
Sbjct: 123 AT----AIFGSPRLSTGIDQRTLLPIEQAIVSSRVLRMTYRGRARAEETRRDVEPLGVTY 178

Query: 161 HQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRL 202
           H   WYLVA       +  F LD +  ++ L E F         
Sbjct: 179 HDGVWYLVAWCRLRKDLRYFRLDRVRALEVLGERFAPRPDFSLR 222


>UniRef50_C5BNS8 HTH domain protein n=2 Tax=Gammaproteobacteria RepID=C5BNS8_TERTT
          Length = 245

 Score =  123 bits (309), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 24/208 (11%)

Query: 10  RLAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCR 65
           R A RL  I++ L    T L+ R++A +  VS RT+ RD +   L  + +E ++  GY  
Sbjct: 2   RKAERLFQILNLLRNRRTVLTARQIAEQLAVSERTVYRDIQALSLSGVPIEGEAGVGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL--------------LMCDESPC 111
            R       M     + A   G   +    DR+L  A               L   E   
Sbjct: 62  QRQFDLPPLMFDRDEVEALLLGARMIRAWSDRQLAAAASSALNKILAVLPPQLRELEETS 121

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYL 167
            I   +     S ++   ++  AI  ++++ +  E          + P  L     TW L
Sbjct: 122 AIKVPDYQQQLSVSVHSEQIRAAIRSQQKIAIDYEDAQAQLSHRCVLPLGLFFWGATWTL 181

Query: 168 VAEHEGHI--AVFTLDEIHLIQPLQETF 193
           V   E  +    F LD I   + L E F
Sbjct: 182 VGWCELRLAYRAFRLDRIRHFELLAENF 209


>UniRef50_B1C6Z1 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1C6Z1_9FIRM
          Length = 301

 Score =  123 bits (309), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 73/203 (35%), Gaps = 19/203 (9%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYC----RLR 67
            RL  I+  L+  E ++ ++LA E  VS RT+ RD     +  + +  Q GY      L+
Sbjct: 4   DRLIQIVFLLLRHENITAKQLAKELCVSARTIYRDINILSIAGIPITSQKGYGGGLSLLQ 63

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVNAL---LMCDESPCVIAPANPVP 120
               +               L  L    +P  D+ L           +S  +    +   
Sbjct: 64  GFSLDKSYFTQEEQKNIIQALQILKSSNYPNADKSLNKIAGLFSHNLQSEWLEIDFSYWG 123

Query: 121 SPS-GALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE--HEG 173
           SP     +   L +AI  +  +T            + + P +L+     WYLVA   H+ 
Sbjct: 124 SPEKERNNITVLERAIINKYVITFTYFNAELTITNQIVEPLKLVFKSHAWYLVAYSKHKN 183

Query: 174 HIAVFTLDEIHLIQPLQETFRRN 196
            I  F +  I  +Q   + F R 
Sbjct: 184 DIRTFKMSRIRELQITDQLFDRE 206


>UniRef50_A9KM28 Helix-turn-helix type 11 domain protein n=2 Tax=Clostridium
           RepID=A9KM28_CLOPH
          Length = 302

 Score =  123 bits (308), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 19/218 (8%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCR 65
              RL  II+ L   + ++   LA +F VS RT+ RD  +     + +        G   
Sbjct: 2   KIDRLIGIITVLQNNKKVTAPYLAKKFEVSRRTINRDIEDICKAGIPIVTTQGNDGGISI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFP----GLDRRLVNALLMCDES-----PCVIAPA 116
           +     +  +     + A   GL             +L++ +     +       +    
Sbjct: 62  MEGFKLDTTIFTTEELEAILVGLKSFDSVSAHSASHKLIHKISPNRPTLMSLADSISIDL 121

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWYLVAEH-- 171
           +     S A    +L +AI  +R V        G   +++ P +++    +WY+      
Sbjct: 122 SSHYKDSLAPKIAQLREAIQQKRVVMFHYYYKKGEDDKKIEPYQIVFQWSSWYVFGFCLK 181

Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209
           +    ++ L+ +  +Q  +E F + +     ++    I
Sbjct: 182 KREFRLYKLNRLWDLQTTEEEFIQREVPEEFLDFNRHI 219


>UniRef50_Q7MF56 Predicted transcriptional regulator n=10 Tax=Vibrio
           RepID=Q7MF56_VIBVY
          Length = 228

 Score =  123 bits (308), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 24/208 (11%)

Query: 11  LAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRL-- 66
            + RL  +++ L +    ++ ++LA    VS RT+ RD +  +   + ++ ++G   L  
Sbjct: 3   KSERLFELLTLLRSKRYAVTAKQLAETMEVSERTIYRDIQSLIHSGVPIQGEAGVGYLLQ 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--------------VNALLMCDESPCV 112
             +     M  +  + A   G+  +    D  L              +   L        
Sbjct: 63  SGSHLPPLMFTEKEMMALELGMRMVRAWSDAELADASRSASIKILSVLPDKLKQQVEDFP 122

Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLV 168
           +           A     L  AI    +V+L  +         ++ P       + W LV
Sbjct: 123 LIVPEFHTHSETAKRGQLLRHAIEHHFKVSLDYQDENGQITERKIQPLGQFFWGKVWTLV 182

Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETFR 194
           A          F LD I  ++   E F 
Sbjct: 183 AWCELRQDYRQFRLDRIQALRMHDEEFE 210


>UniRef50_B4D3V6 Helix-turn-helix type 11 domain protein n=1 Tax=Chthoniobacter
           flavus Ellin428 RepID=B4D3V6_9BACT
          Length = 322

 Score =  123 bits (308), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 25/215 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRLR 67
              RL  ++  L +    +  ++   F V+ RT+ RD        + +  ++  GY  +R
Sbjct: 3   RTDRLVALVMLLQSRRVTTAAQMGEHFEVTERTIYRDLAALGEAGVPILGEAGVGYSLMR 62

Query: 68  TAGSEMQMVPDVLIFAHRSG---------------LAGLFPGLDRRLVNALLMCDESPCV 112
                  M       A  +G               +      +   L   L         
Sbjct: 63  GYHLPPVMFSPDEAMALVTGSLLTERMTDDTTRAAIRSALDKVSVVLPADLQRRVHRLRE 122

Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYL 167
               +      G ++   L  A+   R + +   G          + P  L+ +   W+L
Sbjct: 123 SMQISGRKPGVGPVALSSLQMALADARVLRMRYHGLRRDETTTREVEPLGLVFYLDHWHL 182

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           +A       +  F +D IH ++   E         
Sbjct: 183 IAWCRLREDVRDFRVDRIHAMEVCAEPVTPRPDFD 217


>UniRef50_A4C3H1 Predicted transcriptional regulator n=2 Tax=Gammaproteobacteria
           RepID=A4C3H1_9GAMM
          Length = 231

 Score =  123 bits (308), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 69/214 (32%), Gaps = 25/214 (11%)

Query: 10  RLAVRLSLIISRLVAGETL-SVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCR 65
           R A RL  II+ L    T+ + +++A +  VS RT+ RD +   L  + +E ++  GY  
Sbjct: 2   RKAERLFQIITLLRGRRTVITAKQIAQQLEVSERTVYRDIQALILSGMPIESEAGIGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSG---------------LAGLFPGLDRRLVNALLMCDESP 110
                    M     + A   G                A     +   L   L       
Sbjct: 62  QPKFDVPALMFNPDELDALLLGARMVQGFGSEQLAKSAASALNKIHSVLPEQLHRQIVQQ 121

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166
                               +  AI    ++ LI +  +       + P  L+   + W 
Sbjct: 122 DERLLVPNWHLKEATQYSDLIRLAIKQHLKLALIYQDEKLNLSERTVLPLGLIFWGRAWT 181

Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDS 198
           LVA  E      +F LD I  +  L  TF  +  
Sbjct: 182 LVAWCEKRSDYRLFRLDRITQLTTLTCTFSLHQH 215


>UniRef50_A0AFG8 Complete genome n=16 Tax=Listeria RepID=A0AFG8_LISW6
          Length = 307

 Score =  122 bits (307), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 22/209 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
              RL  II  L+  E +S  ++A  F VS RT+ RD     +  + +   +G       
Sbjct: 2   KIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLMMANIPIYTIAGTKGGIGI 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESPCV----IA 114
               ++   +L     + +     G+++ L           +  +L     P      + 
Sbjct: 62  MPTYKVDKKLLTAEDLTAIIASLDGMEQLLSSAETKKTLQKMKNMLDHSSEPPKSSISLD 121

Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE 170
            +N             L  AI     V L        +   R  P  LL   ++WYL   
Sbjct: 122 FSNLSMKKELNAKVESLYLAIKKHHLVELSYIDRTGKQTIRRTEPYHLLFRNRSWYLQGY 181

Query: 171 --HEGHIAVFTLDEIHLIQPLQETFRRND 197
                    F +  I  ++ L+ETF    
Sbjct: 182 NLERNDFRTFKMSRIVELKTLEETFEARP 210


>UniRef50_B7HZL2 HTH domain family n=31 Tax=Bacillus RepID=B7HZL2_BACC7
          Length = 313

 Score =  122 bits (307), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 66/234 (28%), Gaps = 32/234 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY--QSGYCRLR 67
              RL  I+  L   +T++ + LA +F  S+RT+ RD        + +      GY  + 
Sbjct: 3   RTDRLLAILIELQRKQTVTAQSLAEKFETSIRTIYRDMDALNESGVPIYSMPGHGYSLMD 62

Query: 68  TAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGLDRRLVNALLM 105
                   +          G                      L  + P   ++    L  
Sbjct: 63  GYFLPPIQLTPEEAVTLLLGGDYIEKTFTSSFSVHARSAKEKLEIVLPADQQKKAQELRE 122

Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-----ERLAPCRLLI 160
                  +                 L ++I   + ++      R        + P  L+ 
Sbjct: 123 TFRFLSPMFSHQQSEQEKLENQLLLLQESIQKEQAISFSYRKPRETTKIKRTVHPYGLVN 182

Query: 161 HQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
               WY+VA       I  F LD +  +Q  QE F +          P   + +
Sbjct: 183 ISGIWYIVAHCLLRKQIRNFRLDRMDTLQQEQEFFTKPKDFSLQNYKPESNRTV 236


>UniRef50_B5HKG2 Truncated DeoR-family transcriptional regulator n=1
           Tax=Streptomyces pristinaespiralis ATCC 25486
           RepID=B5HKG2_STRPR
          Length = 273

 Score =  122 bits (306), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 25/211 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL  ++  L +  +++  +LA E  VS RT+ RD          +Y D     GY  
Sbjct: 2   RAARLIKMVLLLQSRPSMTGAELARELEVSERTVTRDALALSEAGVPVYADRGRAGGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMCDES------ 109
           +    + +  +      A             GL         ++  ALL    +      
Sbjct: 62  IGGYRTRLTGLGRDEAEALFLSGLPGALRDMGLEDAASAARLKVSAALLPSLRNAPESAA 121

Query: 110 -PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQTW 165
               +        P        L +A+   RRV              L P  L++    W
Sbjct: 122 RRFHLDAPGWYQEPKTPDLLPVLAEAVWDDRRVQAAYRRGDTEVERLLEPYGLVLKAGVW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRN 196
           YL A  +G + V+ +D     +   E F R+
Sbjct: 182 YLCARADGTLRVYRIDRFSSAEADGERFERD 212


>UniRef50_Q7X2G0 Putative repressor n=3 Tax=Streptomyces RepID=Q7X2G0_9ACTO
          Length = 341

 Score =  122 bits (306), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 74/253 (29%), Gaps = 35/253 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG----YCR 65
           +A R   ++S L      +   LA   GVS RT+RRD      +   +    G    Y  
Sbjct: 2   IANRTLELLSLLQTQREWTGDGLAERLGVSPRTVRRDINRLRELGYPVTATKGPSGSYRL 61

Query: 66  LRTAGSEMQMVPDVLIF----------AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
            R A     +V D              A  +G+          +   L            
Sbjct: 62  SRGARLPPLIVDDEQALAIALSLQTAPASVTGMGDATKRALNSIQELLPPHLAHRLATFS 121

Query: 116 ANPVPSP-------SGALSFWRLIQAITGRRRVTLIAEGRRCERL-------APCRLLIH 161
              + +               +L  A   R  V         + +        P RL++ 
Sbjct: 122 VEQIENAWELAPPQVDPSLLAQLSSAAQQRDLVRFSYRSIHHDSMQDGEVLAEPHRLVVW 181

Query: 162 QQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETF----RRNDSLCRLVEDPVFIQALPHF 215
              WYLVA  +       + +D I  + P    F      ++ + R V++       P  
Sbjct: 182 SGRWYLVAYDQQRSSWHAYRVDRIKDLAPTAWRFGEREGPDEDITRFVQNQPDRGDTPDT 241

Query: 216 RFIQHSLLTFVPA 228
                ++L   PA
Sbjct: 242 WPCWGTVLMECPA 254


>UniRef50_Q0S1T7 Probable transcriptional regulator, DeoR family protein n=2
           Tax=Rhodococcus RepID=Q0S1T7_RHOSR
          Length = 320

 Score =  122 bits (306), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 76/244 (31%), Gaps = 27/244 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSGYCRL 66
            A RL   +  + A   ++  ++A E  VSV T RRD                + G   L
Sbjct: 2   RADRLVATLLLMQARGRVTAAEVADELDVSVATARRDLEALSAAGIPVYPQSGRGGGWSL 61

Query: 67  ---RTAGSEMQMVPDVLIFAHRSGLAGLFPGLD----RRLVNALLMCDESPCVIAPANPV 119
                         +        G A    G      R+LV AL     +    A    +
Sbjct: 62  VGGARTDLSGLSATEAQALFLLVGPAAAVSGEAKAALRKLVRALPQTFRADAEAAATATM 121

Query: 120 PSPSGALSFWR--------LIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167
             P+      R        L  A+  RR+V LI       R    + P  L+     WYL
Sbjct: 122 IDPTRWGERDRRRPEMVDLLQAAVIRRRKVRLIYTNSARQRSERLVDPWGLVDKDDIWYL 181

Query: 168 VAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRF-IQHSLL--- 223
           +A  E     F +D I   +  ++   R D           +  +   R     ++L   
Sbjct: 182 LAGTERGQRTFRVDRIVHAESTEQPGERPDDFTLAAAWEEVVGEVEQRRSTTWATVLIDA 241

Query: 224 TFVP 227
            FVP
Sbjct: 242 RFVP 245


>UniRef50_B1C2N9 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM
           1552 RepID=B1C2N9_9FIRM
          Length = 306

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 17/217 (7%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLR 67
            RL  II  L+     +  +LA +  VSVRT+ RD          +Y+      G     
Sbjct: 13  SRLFRIIYHLMENGKSTAPELAEKLEVSVRTVYRDIDIISSAGVPIYVTTGRNGGIQIAD 72

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----VNALLMCDESPCVIAPANPV-PS 121
           +   +  ++ D       + L  +    D        ++A+        +    +     
Sbjct: 73  SFVLDRLLLSDKEKEDIITALRSVSIVDDHNRDTLSKLSAIFNTKSENWLEVDFSRWGNK 132

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEHEGH--I 175
                 F ++ +AI   + + ++    R       + P +++   ++WY+ A        
Sbjct: 133 SQDNTMFQKIKEAIISHKMLCIVYANTRGEVIERVICPLKMVYKAKSWYIKAFCMNKSDF 192

Query: 176 AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
            +F L  I   + +++ F   +      E  V  + +
Sbjct: 193 RIFKLTRIIQARNMEKNFSPMEFPQEKKETKVNYENV 229


>UniRef50_Q11X99 Transcriptional regulator, DeoR family n=2 Tax=Sphingobacteriales
           RepID=Q11X99_CYTH3
          Length = 231

 Score =  122 bits (305), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 29/228 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL---MYLDLEYQSGYCRLR 67
              RL  +I+ L A + +S  K+A +F +S RT+ RD +      + +  E   GY  + 
Sbjct: 5   RIDRLLGMITLLQAKKFVSAEKIADKFKISKRTVFRDIKAICEQGIPVGSEPNKGYFIVD 64

Query: 68  TAGSEMQMVPDVLIFAHRS-----------GLAGLFPGLDRRLVNALLMCD-----ESPC 111
                  +  +    A               ++  +     ++   L   D         
Sbjct: 65  GYFLPPVLFNNDEANALLLTESLVKGFADKSISKHYSNALDKIKAGLKQVDKDKLEHMQD 124

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYL 167
            I    P    +       L  A++ ++ + +  +  +       + P  L+ +  +W+L
Sbjct: 125 AIKFQLPERMNNDFEYLSILQVAVSDKKIIYIDYKNNKEEVSKREIEPIGLIFYAFSWHL 184

Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
           +           F +  I  ++     F++N      +    +++ LP
Sbjct: 185 IGWCHHRKAYRDFKVSRIIQMKNTGVPFKKNKH----MPLSEYMKELP 228


>UniRef50_Q0S564 Possible transcriptional regulator n=4 Tax=Rhodococcus
           RepID=Q0S564_RHOSR
          Length = 318

 Score =  122 bits (305), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 25/215 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQ----SGYCR 65
            + RL  ++ RL      + ++LA E GVSVRT+ RD        + L  +     G   
Sbjct: 2   RSSRLVEVMLRLEGSRGATAQQLADELGVSVRTVYRDVTALSAAGVPLWTESGPGGGIRL 61

Query: 66  LRTAGS----------EMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
           L    S             M+  V   A   GL  +      +L+ AL +   +   +  
Sbjct: 62  LDGWQSKLGGMTGAETSALMLLGVPSIADDLGLRDVAAAAQSKLLGALPVPLRAGAQLWR 121

Query: 116 AN-------PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIHQQTW 165
                        P        +  ++   RR+ +            L P  L+     W
Sbjct: 122 DRLYVDAPGWFDGPRDNGELPVVASSVLEGRRLGIRYRKGSRSAARTLDPLGLVAKAGVW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           YLVA+H G    + +  I     L++   R D+  
Sbjct: 182 YLVAQHRGRTLSYRVSRISDATVLKQASVRPDNFD 216


>UniRef50_A4J6Q1 Transcriptional regulator-like protein n=2 Tax=Peptococcaceae
           RepID=A4J6Q1_DESRM
          Length = 350

 Score =  122 bits (305), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 38/238 (15%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAG---ETLSVRKLAAEFGVSVRTLRRDFRERLMYL-- 55
           MT+  ++     +RL++II  +        ++V +L  +F V+ R + RD       L  
Sbjct: 1   MTERAKKDATKGLRLNMIIDLINKRTPYGGVTVNELMDKFEVAERQVYRDLNTIANDLRV 60

Query: 56  DLEYQSGY--------CRLRTAGSEMQMVPDV------LIFAHRSGLAGLFPGLDRRLVN 101
            L  Q  +          L                   L+    S L G    L   LV+
Sbjct: 61  PLVKQERHIEGIKKTCYCLEVGYLPSLSPEKATVLFLSLLQQKGSALTGHLNELKDALVS 120

Query: 102 ALL-----------MCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----- 145
            L               ++   +     V        F +L+QA+    RV +       
Sbjct: 121 TLFKYHYNPKELAVEKLQNRIHLVEETLVEPEQVGEMFSKLVQALKVCYRVKIKYFVTHS 180

Query: 146 EGRRCERLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQP-LQETFRRNDSLC 200
           +      + P  L+  +Q WYLV +      I VF +D+I  + P   ETF+      
Sbjct: 181 QKETERVVEPYGLICKRQNWYLVGQCLERNAIRVFRVDQIRDVFPYTSETFQYPTDFD 238


>UniRef50_A4BKA3 Predicted transcriptional regulator n=1 Tax=Reinekea blandensis
           MED297 RepID=A4BKA3_9GAMM
          Length = 235

 Score =  122 bits (305), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 25/222 (11%)

Query: 10  RLAVRLSLIISRLV-AGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCR 65
             A RL  I++ L    + ++ ++L+    VSVRT+ RD         D+E ++  GY  
Sbjct: 2   TKAERLLAILNLLRGRHQAMTAQQLSEHLDVSVRTIYRDIEALCRQGADIEGEAGIGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL----------VNALLMCDESPCVIAP 115
                          + A   G   +    D  L          V ++L       +   
Sbjct: 62  TDRGHLPPLTFTIDELEALTFGARLVKASADPTLAQAADQALQKVRSVLPAHRQHEIERR 121

Query: 116 ANPVPSPSGALSFW-----RLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWY 166
             P+   +   +        + QAI   R V+   +          + P  L+     W+
Sbjct: 122 RAPMLVATHTSTHLSQYAAEIRQAIAAERLVSFGYQDEKRRQTDRTVQPLGLVYWGYCWH 181

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206
           LVA         VF L+ +  ++   + F R ++  +     
Sbjct: 182 LVAWCLLRESYRVFRLERLQHLEVTDQRFCRPEATIQQYLQE 223


>UniRef50_C4RGC2 Putative uncharacterized protein n=1 Tax=Micromonospora sp. ATCC
           39149 RepID=C4RGC2_9ACTO
          Length = 323

 Score =  122 bits (305), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 73/238 (30%), Gaps = 29/238 (12%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLE----YQSGYCRLRT 68
           R+  ++  L +   L   +LA   G  VRT+RR       + + +E       GY   R 
Sbjct: 7   RVLTLLELLQSHTRLPGSELADRLGTDVRTVRRYAAHLRELGIPVEAERGRHGGYRLARG 66

Query: 69  AGSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRL---VNALLMCDESP 110
                 ++ +    A   GL               +G    ++R L   +   L      
Sbjct: 67  YRMPPLVLTNDEALAVVVGLLAAERLGMSMTTPANSGALAKIERVLPHSLREPLAAMRET 126

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWY 166
                               L QA   R  V +      + +    L P  ++ H+  WY
Sbjct: 127 LSFTTNAVTAQAPETSVLLALAQASRARTTVGISYLSWHQDQTERDLDPYGVVFHRGRWY 186

Query: 167 LVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
            V        +  F +D I  +    +TF   D    +      +  +P+   ++  +
Sbjct: 187 AVGRDHRHDSLRTFRIDRIASVTTRTQTFTAPDDFDPVTHLTSALAQVPYRWDVEVLI 244


>UniRef50_C5BZX6 Helix-turn-helix type 11 domain protein n=2 Tax=Actinomycetales
           RepID=C5BZX6_BEUC1
          Length = 313

 Score =  121 bits (304), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 74/238 (31%), Gaps = 24/238 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY----LDLEYQSGYCRL 66
            A RL   +  +     ++  +LA E  VSV T RRD                + G  +L
Sbjct: 2   RADRLVAALLLMQTRGRITAAQLADELEVSVATARRDLEALSTAGVPVYPQPGRGGGWQL 61

Query: 67  ---RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPC------------ 111
                         +       +G A       R  +  L+    +P             
Sbjct: 62  VGGARTDLTGLTSSEARALFLLAGPAASRDPGARSALRKLVGALPAPFRADAEAAAAAVV 121

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL 167
           V        S +       L  A+  RR+VTL       GR    + P  L+     WYL
Sbjct: 122 VDTAGWGERSRTRPPLVDTLQDAVVRRRKVTLDYVSPGRGRSRRLVDPWGLVDKDDVWYL 181

Query: 168 VAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC-RLVEDPVFIQALPHFRFIQHSLLT 224
           VA  +     F +D I  +   +E   R   L    V + V  +       +  ++LT
Sbjct: 182 VAGTDKGRRTFRVDRIAGVTLSEEAAERPAELELERVWESVVAEMEERRSLVPATVLT 239


>UniRef50_A8LFK5 Helix-turn-helix type 11 domain protein n=5 Tax=Actinomycetales
           RepID=A8LFK5_FRASN
          Length = 337

 Score =  121 bits (304), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 74/246 (30%), Gaps = 41/246 (16%)

Query: 15  LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRLRT----A 69
           +  ++  L +G T +V +LA   GV  RT+RR  +  +   + +E   G           
Sbjct: 8   VLTLLELLQSGGTRTVAELADRLGVDGRTVRRYVQHLIDLDVPVESVRGRYGGYRLAAGY 67

Query: 70  GSEMQMVPDVLIFAHRSG-----------------------LAGLFPGLDRRLVNALLMC 106
                M+ D    A   G                       +  + P    R ++A+L  
Sbjct: 68  RLPPLMLNDDEALAVLLGLIASRRAGLLTTTGTASETAAAKIRRVLPERLARGLDAVLDS 127

Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQ 162
                         + +       +  A+   R +++        R    L P  L+ H 
Sbjct: 128 L----AFTAPPGEATAAETAVVLPIADAVRHHRPISIRYTAADGRRSERTLHPYGLVAHN 183

Query: 163 QTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220
             WY+       G    F LD I   + L  +F   D L         +  L +  +   
Sbjct: 184 GRWYVTGADPGIGEDRTFRLDRIEHARTLPGSFEPPDGLD---PAQRVLSGLANAPYRHE 240

Query: 221 SLLTFV 226
            +L   
Sbjct: 241 VILRIQ 246


>UniRef50_A5I226 DeoR-family transcriptional regulator n=13 Tax=Clostridium
           RepID=A5I226_CLOBH
          Length = 314

 Score =  121 bits (304), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 79/241 (32%), Gaps = 35/241 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCRLRT 68
           RL  I+  L+  E +S  +LA +F VSVRT+ RD     L  + +  Q     G+  +  
Sbjct: 5   RLLAIVVMLLNREKISASELAEKFEVSVRTIYRDIEAINLAGIPIVSQIGNNGGFYIIDN 64

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRR-------LVNALLMCDESPCVIAPANPVPS 121
                Q++    + +    L  +   LD +        V  ++  ++          +  
Sbjct: 65  YKINHQLLTLEDMISIIEALKNMNKFLDNKNVEMAIEKVKNIVPKEKKEVFDLHFEQMCI 124

Query: 122 PSGALSFWR----------LIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYL 167
            +    F +          +  A+  +  +       +       + P  L+    +WYL
Sbjct: 125 DTLPWGFKKCEEENLKYKIIYDAVDNKNCIAFDYRNSKGEYNWREIEPLTLVFKGFSWYL 184

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCR-LVEDPVFIQALPHFRFIQHSLLT 224
            +    +    +F L  +  +         ++ +    +    +I      +     +L 
Sbjct: 185 FSFCKLKNDYRLFKLSRMENLTV------PHEKINENRISYKEYINISESEQVPTRVVLK 238

Query: 225 F 225
           F
Sbjct: 239 F 239


>UniRef50_Q12H80 Helix-turn-helix, type 11 n=7 Tax=Proteobacteria RepID=Q12H80_POLSJ
          Length = 316

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 74/237 (31%), Gaps = 28/237 (11%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTAGSE 72
           R+  ++  L A   LS  +LA    V  RTLRR   +   + + +  + G     +  + 
Sbjct: 7   RVLTVLELLQAHGRLSGAELARRLEVDGRTLRRYIAKLESLGIPVVAERGRYGCYSLVAG 66

Query: 73  MQMVPDVLIFAHRSGLA-GLFPGLDRRLVNALLMCDESPCVIAPANP-----VPSPSGAL 126
            ++ P +        L+ GL       L  A      +   +    P          G  
Sbjct: 67  FKLPPMMFTDDEALALSIGLVAARGLGLAEAAPAVQSAQAKLERVMPGKLKNRIRALGET 126

Query: 127 SFWRLIQAI---------------TGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYL 167
               L +A+                G +RV L  +            P  L      WY+
Sbjct: 127 VTLDLTRAVAPGDNTALLALSAAAHGWQRVHLSYQSADGVVTERDFDPYGLAYRGGRWYV 186

Query: 168 VAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
           V      G +  F LD +  +QPL   F        +    + +  +P    ++  L
Sbjct: 187 VGLCHLRGGLRSFRLDRVQQVQPLNAVFTPPADFNAVQHLALGLATMPRAITVRVLL 243


>UniRef50_B6R343 Helix-turn-helix, type 11 domain protein n=1 Tax=Pseudovibrio sp.
           JE062 RepID=B6R343_9RHOB
          Length = 227

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 63/210 (30%), Gaps = 21/210 (10%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRL-- 66
           R A RL  +++ +         +LA    VSV T+ RD        + +E ++G   L  
Sbjct: 2   RRAERLFRLVNEMRTRGVSRANELAEHLEVSVSTIYRDIAHLQASGMPIEGEAGVGYLLR 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGAL 126
                         I A   GLA +    D  LV+A            PA      + A 
Sbjct: 62  PGFDLPNTTFTHDQIDALAVGLAFVESTGDPALVSAAREVRAKIQAGLPAPEERKLADAP 121

Query: 127 SFW------------RLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE 170
            +              L +AI  ++ V +            RL P  +      W   A 
Sbjct: 122 YYSLQSKNSAPADVGVLREAIRTQQVVEITYTNASGSTSTRRLCPLVIWNLTDGWMFSAW 181

Query: 171 H--EGHIAVFTLDEIHLIQPLQETFRRNDS 198
                    F  D I  +    E F  ++ 
Sbjct: 182 CELRQDFRTFRFDRIAQLTVTNEHFIADED 211


>UniRef50_C5BVH8 Helix-turn-helix type 11 domain protein n=1 Tax=Beutenbergia
           cavernae DSM 12333 RepID=C5BVH8_BEUC1
          Length = 325

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 77/248 (31%), Gaps = 31/248 (12%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDF-RERLMYLDLE---YQSGYCRLR 67
           A R+  +++ L      S  +LA    VS RT+R D  R R +   +E    ++G+ RL 
Sbjct: 5   AARMLDLLALLQMRPGWSGSELAQRLSVSTRTIRADIERLRRLDYPVEGVRGRAGHYRLG 64

Query: 68  TAG-SEMQMVPDVLI--------------------FAHRSGLAGLFPGLDRRLVNALLMC 106
                   ++ D                           + L  + P   RR V+AL   
Sbjct: 65  VGAKLPPLLLDDDEAVAVAIGLRAATGLSGVEESTARALAKLEQVMPHQVRRKVHALATA 124

Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQ 162
                V   +N       A     +  AI     +               + P RL+  Q
Sbjct: 125 TSQGPVNTDSNVADPVVDAGVLSSIAAAIRDLEWLRFSYRDDAADAPPRAVEPYRLVSWQ 184

Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220
           + WYLVA        A F +D + L       F  +        D V          +  
Sbjct: 185 RRWYLVARDTTSTAWATFRVDWMDLRMRTGRHFVPSPLSEAEYSDLVVRTVASTGWAVHT 244

Query: 221 SLLTFVPA 228
            +L   PA
Sbjct: 245 RILVHAPA 252


>UniRef50_C0C4Y8 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C4Y8_9CLOT
          Length = 309

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 7   RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCR 65
           R D  + RL  I+  L+    ++   LA    VSVRT+ RD        + +  Q G   
Sbjct: 8   RTDMKSSRLFQILYLLMERRDVTAGMLAERLEVSVRTIYRDLDALSAAGIPVYAQKGQGG 67

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-------RRLVNALLMCDESPCVIA---- 114
                 E +M   +L    +  +      LD         L+  +        V      
Sbjct: 68  GIRLMEEFKMDRSLLSGEQQEQILTALQSLDSVGAIEGSSLLTQMSGLFGKKAVGWLEVD 127

Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAE 170
             +          F    +AI   R ++              + P +L      WY+   
Sbjct: 128 FGSWGAMKKEKEYFEICREAILHCRLLSFEYFNSSGGWCERTVEPLKLCFKGGNWYVSGY 187

Query: 171 H--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPV 207
                   +F L  I  +    ETF           +PV
Sbjct: 188 CRRRRGFRLFRLSRILKLCIEDETFTPKVYKEGERPEPV 226


>UniRef50_A1SPT5 Helix-turn-helix, type 11 domain protein n=2 Tax=Actinomycetales
           RepID=A1SPT5_NOCSJ
          Length = 327

 Score =  121 bits (303), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 30/247 (12%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCRL 66
           + R+  ++S L         +LA    VS RTLRRD      +  D++       GY   
Sbjct: 11  SARMLRLLSLLQTHRYWPGAELAGRLEVSPRTLRRDIDRLRELGYDVDAVRGVAGGYQLR 70

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP------ 120
                   ++ D    A    L     G    L    +        + P           
Sbjct: 71  AGGQLPPLLLEDDEAVAIAVALRTAAAGAVAGLEETAIQALTKVIGLMPPRLRRRMDAVH 130

Query: 121 -----------SPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165
                          A     L QA      V+     R       R+ P RL+   + W
Sbjct: 131 SQTDGVPWGGGPALDAGVLTTLAQACRDDEPVSFSYVSRDSSPSERRVEPHRLVSLGRRW 190

Query: 166 YLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
           YLVA          F +D +   +   + F          + P F++A       ++ + 
Sbjct: 191 YLVAYDRDRQDWRSFRVDRVTAPRASGQRFLPRP--LPAPDAPSFVRAGIRAMPQRYEVR 248

Query: 224 TFVPADS 230
                D+
Sbjct: 249 VRFAVDA 255


>UniRef50_A0QS56 DeoR-family protein transcriptional regulator n=7
           Tax=Actinomycetales RepID=A0QS56_MYCS2
          Length = 320

 Score =  121 bits (303), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 74/266 (27%), Gaps = 40/266 (15%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL-- 57
           M +          R+  ++  L +    +  +LA   GV+ R++RRD      +   +  
Sbjct: 1   MARTVDTTG----RVVQLLGLLQSRRVWTGEELAERLGVTGRSVRRDIERLRELGYPVHA 56

Query: 58  -EYQSGYCRLRTAG-SEMQMVPDVLIFAH-----------RSGLAGLFPGLDRRLVNALL 104
            + Q G  +L         ++      A             +G+         +L   + 
Sbjct: 57  SKGQGGGYQLGAGMALPPLLLDPDEAVAMAVCLRLAAGGSVAGVGESALRALSKLDQVMP 116

Query: 105 MCDESPCVIAPANPV-------PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERL 153
               S         V        +         L +A   R  V+         +   RL
Sbjct: 117 ARLRSQVAAIHDATVTLGPNATDTAVAPDVLMTLARACRDREHVSTGYTDLRGNQTQRRL 176

Query: 154 APCRLLIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
            P +L+   + WYL+A            LD +  ++    TF    +          I A
Sbjct: 177 EPYQLVTTGRRWYLMAYDRDREDWRSLRLDRMSDVRATGTTFTARPAPDAAAYVGRAISA 236

Query: 212 LPHFRFIQHSLLTFVPADS-----PP 232
                     +  F P        PP
Sbjct: 237 --SAYPYVARVRYFAPEKVVAQRFPP 260


>UniRef50_D0RTY4 DeoR-family transcriptional regulator n=3 Tax=Streptococcus
           RepID=D0RTY4_9STRE
          Length = 308

 Score =  121 bits (303), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 70/200 (35%), Gaps = 22/200 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCR 65
              RL  I+  L+  + ++ +++A  F +S RT+ RD     L  + +  +     G+  
Sbjct: 2   KLERLIYILLALLNKKQITAKEIAERFEISTRTVYRDMDTLSLAGIPIYSERGDKGGFYI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGL--------FPGLDRRLVNALLMCDESPCVIAPAN 117
                 +     +       +    +        F  ++ +L +  +  + +P      +
Sbjct: 62  PDDYKMDSSFFTEEEKQFIINMSQNVGKIVGRPSFDSIEHKLTSQEVTDNVNPFYFDLTS 121

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEG 173
              + +       + QAI   ++V+       + R    + P RL+     WY++     
Sbjct: 122 WSLNTNYL---LEIEQAIQTGKKVSFSYFSKKQERSLRTILPYRLIFKLNAWYVIGYCFE 178

Query: 174 H--IAVFTLDEIHLIQPLQE 191
                +F L  I  +  + E
Sbjct: 179 KLDFRIFKLSRIRDLLIVDE 198


>UniRef50_C0ZJQ9 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZJQ9_BREBN
          Length = 318

 Score =  121 bits (303), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 29/247 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDL---EYQSGYCRL 66
            A RL  I+  L     ++ ++LA    VS RT+ RD        + +       G   L
Sbjct: 2   RADRLLAILLLLQNHGRMTSKQLAERLEVSERTVHRDMEALSSSGVPVYALRGADGGWAL 61

Query: 67  RTAGSEMQMVPDVLIFAHRS-----------GLAGLFPGLDRRLVNALLMCDESPCVIAP 115
                       +                  GL   +     +L++AL    +   +   
Sbjct: 62  AEGYRSNLTGMKINELQSLLVASPAALLNDLGLHENYEAAFLKLLSALPKTVQQDAIHVR 121

Query: 116 AN-------PVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTW 165
                       S         +  A+   R++ +            + P  L+  +  W
Sbjct: 122 HLLHIDGAGWHESTETFPFLSTVQDAVWLSRKLFIRYMREDVAVERIVCPLGLVAKRSIW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFRFIQHS 221
           YLVA+ +  +  + +  +     L + F R                F  +LP +      
Sbjct: 182 YLVAKVDEDMRTYRISRLLDAHLLDDGFVRPSEFDLASYWEQSTMDFKSSLPRYPARLLV 241

Query: 222 LLTFVPA 228
               +PA
Sbjct: 242 KKGTLPA 248


>UniRef50_A8FE45 Possible transcriptional regulator n=2 Tax=Bacillus pumilus
           RepID=A8FE45_BACP2
          Length = 310

 Score =  121 bits (303), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 24/232 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCR 65
              R+   +  L++ + +  + LA    VS RT+ RD        + +        G   
Sbjct: 2   KIDRILSTVMLLISKKQVQAKDLAELHEVSTRTIYRDIDTINQAGIPVVTTQGAGGGISL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALL------------MCDESPCVI 113
           +     E ++  D  I    + L  +      +    +L              ++   V 
Sbjct: 62  VEDYRLEKKLFTDDDIEVILTALESMMSAYSFKESEHVLKKIKSLIPTQTGENEKQHHVF 121

Query: 114 APANPVPSPSGALSFWRLIQ-AITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLV 168
              +     S A    +LI  A +  + +       +       + P  L++  + WYL 
Sbjct: 122 IDLSSWGKDSQAEQKLQLIHTAASAHQYIQFTYRNAKGETLPRNVEPYTLVLKGRHWYLY 181

Query: 169 AEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218
           A         +F L  +  +  +   F+               Q  P    +
Sbjct: 182 AFCCVKKAFRLFKLTRMTGLVAISGYFQPKRVKNEEKPWNDSWQEQPSVSPV 233


>UniRef50_C1CY87 Putative transcriptional regulator n=1 Tax=Deinococcus deserti
           VCD115 RepID=C1CY87_DEIDV
          Length = 318

 Score =  121 bits (303), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 28/218 (12%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG----YCRL 66
           ++R+  ++  L A E+++  +LA    VS RT++R         + +E + G    YC  
Sbjct: 5   SMRVLTVLELLQARESVTGAELARRLEVSPRTVQRYVTRLQDLGIPVEGRRGVGGAYCLK 64

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGL---------------FPGLDRRLVNALLMCDES-- 109
                   M  D    +   GL  L                  L R L   L    ++  
Sbjct: 65  PGFRLPPLMFTDEEALSLALGLRALRHLGLHALAPAAEAAGAKLSRTLPAPLRDGVQALE 124

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165
             V   A+P    + A     L++A+   R V              +    R+L     W
Sbjct: 125 TAVQLDASPWVVSTDAALLATLLRAVRESRTVEFRYVAAQGVGTTRQANIYRVLHLDGRW 184

Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201
           Y V      G +  F LD +  +  L   F    S   
Sbjct: 185 YAVGWCLLRGALRSFRLDRMEELCVLDTRFVAPASFDA 222


>UniRef50_C6D1B9 Helix-turn-helix type 11 domain protein n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6D1B9_PAESJ
          Length = 306

 Score =  121 bits (302), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 67/209 (32%), Gaps = 21/209 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  II  L+  E +S  +L+ ++GVS RT+ RD        + +    G       
Sbjct: 2   KLERLISIIYLLLNNEVVSASELSCKYGVSQRTIYRDIEAICAAGIPVVSYQGVNGGYGI 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLD------------RRLVNALLMCDESPCVIAPAN 117
             E +M   +L     + +  L                  RL        ++P +     
Sbjct: 62  MKEYKMDKSLLSSDDIASIITLLKSTTTLFEDERVQETIHRLKTVQADNGKAPSLTMDLG 121

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEH-- 171
                S       L  AI GRR V       +       + P  LL+    WYL      
Sbjct: 122 SWR--SYTAHLRTLHSAINGRRLVRFHYMNAKDERQDRLVEPVSLLLKYNAWYLYGYCRS 179

Query: 172 EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
                VF L  +  +  L E + R  ++ 
Sbjct: 180 RDDYRVFKLTRMSELLALTECYERKHNIH 208


>UniRef50_C6J3L6 Putative uncharacterized protein n=1 Tax=Paenibacillus sp. oral
           taxon 786 str. D14 RepID=C6J3L6_9BACL
          Length = 310

 Score =  121 bits (302), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 54/206 (26%), Gaps = 18/206 (8%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
              RL  II  L+  + +    L+  F VS RT+ RD        + +   SG       
Sbjct: 2   KIERLLGIIVLLIHRKRMKAEDLSRYFEVSERTIYRDIDSLHRAGIPIVSLSGQDGGYEL 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-VNALLMCDESPCVIAPANPVPSPSG---- 124
               +     L       +      +++      +        ++    P   PS     
Sbjct: 62  MDGFKWDKTYLTLDDLLSIQWALRSIEKATGFEDIHDLISKINLLIDTVPAQDPSIQLQI 121

Query: 125 ------ALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--E 172
                 +     L ++I     + +             + P  + +    WY        
Sbjct: 122 SHSNNSSQPIQALYKSIQNCTVIKIRYVDHKGSETVRDMEPMGIFLKDYHWYTWGYCLLR 181

Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDS 198
             + VF L  I         F R   
Sbjct: 182 KELRVFKLTRIIETSNTDRYFTRRAY 207


>UniRef50_Q65L70 Hypothetical DNA-binding protein n=1 Tax=Bacillus licheniformis
           ATCC 14580 RepID=Q65L70_BACLD
          Length = 315

 Score =  121 bits (302), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 64/232 (27%), Gaps = 31/232 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65
              RL  ++  +      +  +LA EFGVS RT+ RD  E        Y +     GY  
Sbjct: 3   KTERLIELMMTIHTKRKFTAGELAVEFGVSYRTVLRDLDELSALGVPIYSETGANGGYYL 62

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLF-----------PGLDRRLVNALLMCDESPCVIA 114
           L                A       L              + ++    L    +      
Sbjct: 63  LNEPVLPPLFFTQSEAAAMFFAYQSLQFFGSLPFDAETRMVLKKFYRHLPPETQERIDAM 122

Query: 115 PANPV----PSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWYL 167
               V      P  A     L+ A   +  +T++ +G        + P  L      WY 
Sbjct: 123 KDRIVFWNPHRPKAAEHLETLLDAAVTQSVLTVVYDGTDECTERSIQPIGLYSWNGFWYC 182

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRF 217
            A         +F  D I   +      + +    R +  P  +  + H   
Sbjct: 183 PAYCFKRQAFRLFRADRILRAE------KADSGQARQLPYPSVLSWIKHSES 228


>UniRef50_B4UYC1 Helix-turn-helix type 11 domain containing protein n=1
           Tax=Streptomyces sp. Mg1 RepID=B4UYC1_9ACTO
          Length = 335

 Score =  120 bits (301), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 69/244 (28%), Gaps = 40/244 (16%)

Query: 15  LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLE----YQSGYCRLRTA 69
           +  ++  L +G   +V +LAA   V  RT+RR     L   + +E       GY      
Sbjct: 1   MLTLLELLQSGGLRTVAELAARLEVDERTVRRYADHLLDLDVPVESVRGRHGGYRLAAGY 60

Query: 70  GSEMQMVPDVLIFAHRSG-----------------------LAGLFPGLDRRLVNALLMC 106
                M+ D    A   G                       +  + P    R ++A+L  
Sbjct: 61  RMPPLMLSDDEALAVLLGLVAGQRAGLMSAAGTASETAAAKIRRVLPERLGRRLDAVL-- 118

Query: 107 DESPCVIAPANPVPSPS-GALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIH 161
                +     P             +  A+   R V++             L P  L+ H
Sbjct: 119 ---DSLAFTTPPRTPAVPETAVLLAIADAVRHHRPVSIRYTAADGRHSERTLHPYGLVAH 175

Query: 162 QQTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQ 219
              WY+       G    F LD I   + L  TF               +   P+   + 
Sbjct: 176 SGRWYVSGGDPAIGEERTFRLDRIADARTLPGTFDPPTGFAPAEHVLAGLATAPYRHEVT 235

Query: 220 HSLL 223
             + 
Sbjct: 236 ARVQ 239


>UniRef50_C0Z5Y8 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0Z5Y8_BREBN
          Length = 334

 Score =  120 bits (300), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 69/252 (27%), Gaps = 33/252 (13%)

Query: 7   RHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQS 61
           R +    RL  I+  + +   +  ++LA     SVR++ RD        + +        
Sbjct: 14  RLEMRLHRLIAILLLIESRGKMKAKELAIALETSVRSIYRDIDALSQAGIPIAATSGPGG 73

Query: 62  GYCRLRTAGSEMQMV------------------PDVLIFAHRSGLAGLFPGLDRRLVNAL 103
           G   +      ++ +                   D       +           ++    
Sbjct: 74  GIYLMEGYTVNLKQLYVDDVVHLYLTGMGIHVGQDTETGHKLTSALLKLEKTLPQIYRPD 133

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLL 159
           +   +                  +   L  A+    +V +             + P  L+
Sbjct: 134 IEKAKKRFYFDETPWWEERVVIPNLEVLRAAVWRSSKVVIAYRKMDGSSSSRTVCPYGLV 193

Query: 160 IHQQTWYLVAEHEG--HIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALP 213
           + +  WYLVA  E    +  F  + I  +   +E F   +S         ++  F QA  
Sbjct: 194 VKKTEWYLVAYCENAQEVRTFKCERIPSVHVREEAFEIPESFSLAGYWTNQEAAFKQACR 253

Query: 214 HFRFIQHSLLTF 225
              +    +   
Sbjct: 254 EVEYFPVVIRLH 265


>UniRef50_D1ARJ4 Helix-turn-helix type 11 domain protein n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1ARJ4_SEBTE
          Length = 309

 Score =  120 bits (300), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 68/226 (30%), Gaps = 34/226 (15%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCR 65
              RL  II  L+  + +   +LA  F VS RT+ RD        + +        G   
Sbjct: 2   KIERLLSIIVILLERKKVPAPRLAEIFEVSTRTIYRDIDTLNAAGIPVITYPGVNGGVGI 61

Query: 66  LRTAGSEMQMVP-------------------DVLIFAHRSGLAGLFPGLDRRLVNALLMC 106
           L     E  +                        I      L G+ P    + +      
Sbjct: 62  LEEFKLEKNLFTSEDLSSLLTGLSSISSAFSSSEITNALIKLKGIIPEKRLKDIEKK--- 118

Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQ 162
             +  +I       + + +     +  A+   + +T   E R       ++ P R+++  
Sbjct: 119 -TNRIIIDLTPWKNTNNVSSDLKSIKSAMDKNKILTFKYEDRQRKKSTRKIEPYRIILKG 177

Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206
             WY+            F L  I  ++  +++F   +      E+ 
Sbjct: 178 NDWYVEGFCILRNDFRYFKLSRISDLKITKKSFAPREIPEAEPENG 223


>UniRef50_A6WLL6 Helix-turn-helix type 11 domain protein n=16 Tax=Alteromonadales
           RepID=A6WLL6_SHEB8
          Length = 237

 Score =  119 bits (299), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 21/212 (9%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRL-- 66
           R A RL  I+  L      + ++LA    VS RT+ RD ++  L  + +E ++G   L  
Sbjct: 2   RRADRLFQIVQILKHKRLTTAQELAERLEVSTRTIYRDVQDLCLSGIPIEGEAGVGYLLR 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES------------PCVIA 114
                   M  +  + A + G+  +     + L +A                     ++ 
Sbjct: 62  HEVNVPPLMFNEAELEAIQVGMRMVQTWGGKELGSAARQAMIKVEAVLPKRLQAYQSLMF 121

Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLVAE 170
             +     +       L  +   R  V L  +          + P  +   + TW L+  
Sbjct: 122 SPDFYLDSNEFQFLDPLRNSAQRREYVKLFYQDVKLDVTEREVRPLAIYFWRGTWTLLTW 181

Query: 171 HEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200
            E       F +D I  +  L   F +     
Sbjct: 182 CELRSAFRNFRVDRITGLVRLNRHFEQAPGQE 213


>UniRef50_Q28UL6 Helix-turn-helix type 11 n=46 Tax=Alphaproteobacteria
           RepID=Q28UL6_JANSC
          Length = 237

 Score =  119 bits (299), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 62/213 (29%), Gaps = 25/213 (11%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRL 66
           R A RL  +I RL  G+  + R LA    VS RT+ RD        + +E ++  GY   
Sbjct: 2   RRADRLFRLIDRLRPGKLTTARALADAMEVSERTIYRDIAHLQGSGVPIEGEAGLGYMMR 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFP-----------GLDRRLVNALLMCDESPCVIAP 115
                   M  +  I A   G   L                 ++   L     +      
Sbjct: 62  DGYNLPPLMFTEEEIVALSVGARMLQTWGGTSMARGADSALDKITAVLPDATRTRAERLR 121

Query: 116 ANPVP----SPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167
                          +   +  AI    R+++             L P  L      W L
Sbjct: 122 FEAWTTNPLDAKTRATIDTVEAAIQAAERLSIDYRDDKGNPTERILRPLGLWFWGSVWTL 181

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198
           VA         +F LD I   + L   F  +  
Sbjct: 182 VAWCELRDAYRMFRLDRILDARNLG-AFTPHPD 213


>UniRef50_O34920 Uncharacterized HTH-type transcriptional regulator yobV n=2
           Tax=Bacillus subtilis group RepID=YOBV_BACSU
          Length = 313

 Score =  119 bits (298), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 66/227 (29%), Gaps = 27/227 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
              RL  ++  L++ + +   +LA  F VSVRT+ RD        + +    G       
Sbjct: 2   KLERLLAMVVLLISKKQVQAAELAELFEVSVRTIYRDIETINRAGIPIVTSQGSGGGIGI 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------VNALLMCDESP-------- 110
               ++  + L       +A     +               +  L+    +         
Sbjct: 62  METYRLEREWLKEEELFAIASALQSVSSMYEPVSHSTAYQKIKHLIPEQSTQAFKHQTEK 121

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWY 166
             I       +        ++  AI     ++                P  L+     WY
Sbjct: 122 WFIDMTAWGHTEDQKTLREKISAAIDRLLTISFTYTSASGETLLRETEPYTLVCKAGHWY 181

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRND-SLCRLVEDPVFIQ 210
           L A          F L+ +  +  L +TF R D  L  L  D  + Q
Sbjct: 182 LYAYCLVRNDFRFFKLNRMKDLAILHQTFIRKDIQLDTLPWDKSWYQ 228


>UniRef50_D2Q2S8 Helix-turn-helix type 11 domain protein n=2 Tax=Actinomycetales
           RepID=D2Q2S8_9ACTO
          Length = 320

 Score =  119 bits (298), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 73/217 (33%), Gaps = 30/217 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY-LDLE---YQSGYCRL 66
           +  R+  +++ L  G   S  +L++  GVS RTLRRD      Y   ++    + G+ RL
Sbjct: 1   MTERMLALLATLQTGRAFSGAELSSRLGVSARTLRRDIDRLRGYGYPVDTQPGRGGFYRL 60

Query: 67  RTAG-SEMQMVPDVLIFAHRSGLAGL------------------FPGLDRRLVNAL-LMC 106
                    ++ D    A   GLA L                  +  +D+ L   L    
Sbjct: 61  TAGRALPPLVLDDDEAVATLLGLATLAATGEAGEGRLDEAATRAYGKIDQLLPGRLRPRA 120

Query: 107 DESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQ 162
                 +  A+ +           L  AI  RR      +         R+ P RL+   
Sbjct: 121 AAIRSTLEAAHQLAPAPSPQLLADLADAIRARRTAVFEYQSPTGRPSSRRVEPHRLVHLN 180

Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197
             WY VA    +    VF  D I  +Q +   F    
Sbjct: 181 LRWYFVAWDVEKQDWRVFRCDRIEQLQIMTSQFEPRP 217


>UniRef50_D2B3I6 Helix-turn-helix, type 11 n=2 Tax=Actinomycetales
           RepID=D2B3I6_STRRD
          Length = 333

 Score =  118 bits (296), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 72/259 (27%), Gaps = 33/259 (12%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY 59
           M        R A+R   I   L     ++  +LAA  GV+ R  RR         + +E 
Sbjct: 1   MPTDLSPTAR-ALRAMEI---LRTRPGVTAGELAACLGVTERAARRYVGILREAGIPVES 56

Query: 60  Q----SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR----------RLVNALLM 105
                 GY   R          +         +    P              +++ AL  
Sbjct: 57  ARGPYGGYRLGRGTKLPPVAFTEPEALGLVMAVLDGQPAAADVGDLVGAALGKVIRALPE 116

Query: 106 CDESPCVIAPANPVPSP------SGALSFWRLIQAITGRRRVTLIAE----GRRCERLAP 155
                      +   +P              L+ AI  RRRV +             + P
Sbjct: 117 NVGRQAAALREHASAAPDRFAARPDPAITSALVAAIADRRRVVVSYRSESGNEWEAEVDP 176

Query: 156 CRLLIHQQTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
             +++    WYL+        I  + +D +  +Q     F   D L  +      +    
Sbjct: 177 WAVVVRHGRWYLLCHSHRADAIRTYRVDRVRQVQRSTHAFEPPDGLDPVTALEENLGT-- 234

Query: 214 HFRFIQHSLLTFVPADSPP 232
            + F    +     A+  P
Sbjct: 235 GWEFATRVVFDAPLAEVAP 253


>UniRef50_A3CLM4 Putative uncharacterized protein n=2 Tax=Streptococcus
           RepID=A3CLM4_STRSV
          Length = 299

 Score =  118 bits (296), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 20/228 (8%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL----EYQSGYCR 65
              R   IIS LV     + ++L+  F VS RT+ RD  +  L  + L        G   
Sbjct: 2   KIDRQMGIISHLVNQRKTTAKELSELFKVSTRTIMRDIDDLSLAGIPLYVMKGKNGGIFL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR-----RLVNALLMCDESPCVIAPANPVP 120
           +    ++   +      +  SGL   +  L+       ++        S   I  +    
Sbjct: 62  MEDFQTDKPPLTQSERLSIESGLKSRYQVLEDTSTFNAILKLNATNTYSDFEIDLSLSQG 121

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEHEGHIA 176
           +       ++L++AI GR ++             +   P R++   ++WY+ A       
Sbjct: 122 NLEIRTLIFKLLEAIRGRVKIKFSYINSQGLVSQKNCEPYRIVYKDRSWYMDAYDTDKAR 181

Query: 177 --VFTLDEIHLIQPLQ----ETFRRNDSLCRLVEDPVFIQALPHFRFI 218
             VF +  I  +          F           +   +  + H + I
Sbjct: 182 FSVFKVARISELTLSDTFSKRHFTPLPYDGGTWMNENKVPVILHVQKI 229


>UniRef50_B5GB15 DeoR-family protein transcriptional regulator n=2
           Tax=Actinomycetales RepID=B5GB15_9ACTO
          Length = 327

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 72/250 (28%), Gaps = 42/250 (16%)

Query: 18  IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEY----QSGYCRLRTAGSE 72
           ++  L  G   S  +LAA  GV+ RT+RRD          +        GY     +   
Sbjct: 1   MLGLLQRGRNWSGPELAARLGVTARTVRRDVERLRALGYPVHALQGVGGGYRLGAGSELP 60

Query: 73  MQMVPDVLIF----------------------AHRSGLAGLFPGLDRRLVNALLMCDESP 110
             ++ D                             + +  + P   R  V+AL    E  
Sbjct: 61  PLLLDDEEATATAASLLAGAGGGGPGAGEAALRALAKIDRVMPARLRHEVSALAGAVE-- 118

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTWYL 167
                    P      +   L  A             R      R+ P RL+   + WYL
Sbjct: 119 ----FFEGGPERVEPATLVTLAGACRDEVEARFRYPSRGEVTERRVEPYRLVASDRRWYL 174

Query: 168 VAE--HEGHIAVFTLDEIHLIQPLQETFRRND---SLCRLVEDPVFIQALPHF-RFIQHS 221
           +A          F +D +  +      F            V+  V   A PH  RF+ H+
Sbjct: 175 LAYDLDRDDWRTFRVDRMTEVAARTWRFTPRPAPEDAAAYVQRGVVTGAYPHSVRFLVHA 234

Query: 222 LLTFVPADSP 231
               V A  P
Sbjct: 235 PAAEVRAQVP 244


>UniRef50_C9YTR3 Putative transcriptional regulator n=8 Tax=Streptomyces
           RepID=C9YTR3_STRSW
          Length = 333

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 76/247 (30%), Gaps = 39/247 (15%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL  ++  L +  +++  +LA E  VS RT+ RD +        +Y D     GY  
Sbjct: 2   RAARLIKMVLLLQSRPSMTAAELARELEVSERTVTRDAQALSEAGVPVYADRGRAGGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMCDE------- 108
           +    + +  +      A             GL         ++  ALL           
Sbjct: 62  IGGYRTRLTGLARSEAEALFLSGVPGALREMGLEDAASAARLKVSAALLPSLRDASRTAA 121

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIHQQTW 165
               +   +    P        +  A+   RR+              L P  L++    W
Sbjct: 122 QRFHLDAPSWFQEPKTPELLPAVADAVWDDRRIVARYRRGDVEVGRELEPYGLVLKAGVW 181

Query: 166 YLVAEH----------EGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQA 211
           YL A            +G    + +D    ++   + F R++          +   F ++
Sbjct: 182 YLCARVPAAGDGTGEGDGPFRTYRIDRFLSVEDGGDRFARDEGFDLPGYWDEQTERFARS 241

Query: 212 LPHFRFI 218
           + H   +
Sbjct: 242 ILHTEVL 248


>UniRef50_D1CH46 Helix-turn-helix type 11 domain protein n=1 Tax=Thermobaculum
           terrenum ATCC BAA-798 RepID=D1CH46_THET1
          Length = 320

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 31/220 (14%)

Query: 26  ETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSG---------YCRLRTAGSEMQM 75
             ++ R+LA +  VS RT+ RD     +  + +  Q G            L   G   + 
Sbjct: 17  GKVTARELAEKLEVSERTIHRDMEALGMAGVPIYAQRGAGGGWALLPGYELDVPGIGPEE 76

Query: 76  VPDVLI-----FAHRSGLAGLFPGLDRRLV-------NALLMCDESPCVIAPANPVPSPS 123
           +  +L+          GL         +L           L        + P    P   
Sbjct: 77  LEVLLLGHSPKLLSDLGLGSKLEAAYGKLALALQPQHRESLDRVRERLYVDPVGWRPREE 136

Query: 124 GALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVFT 179
                  L +A+   R   L             + P  L++   +WYLV   EG +  + 
Sbjct: 137 AVDLLPTLYRAVWEERSARLRYRRADGQEVERWMQPLGLVVKGGSWYLVGAVEGEVRTYR 196

Query: 180 LDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHF 215
           +  +  ++ L + F R                F ++LP +
Sbjct: 197 VSRMASVE-LGQHFDRPAGFDLARYWRDSQERFQESLPRY 235


>UniRef50_C0CXX2 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0CXX2_9CLOT
          Length = 304

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 68/221 (30%), Gaps = 17/221 (7%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65
              RL  I   L+  +  S  +LA +F VSVRT++RD        + +      + GY  
Sbjct: 2   KIDRLYGITVYLLNHKKASASELARKFEVSVRTVQRDIDALCQAGIPVAAESGAKGGYSI 61

Query: 66  LRTAGSEMQMVPDV---LIFAHRSGLAGLFPGLDRRLVNALLMCDESP--CVIAPANPVP 120
             T   + Q +      LIF    G +   P  +             P    I     V 
Sbjct: 62  PDTFRMDSQAITQEDYGLIFTALKGFSSAMPSPNIASALEKFTALSKPDNERIILDFSVL 121

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAEH--EGH 174
              G     +L  AI  +  V           R   + P  L+     WYL+A       
Sbjct: 122 REGGETLIKQLQTAIRRKCCVRFTYTNADNMTRVHTVEPVALVYRWYAWYLLAYSTVRED 181

Query: 175 IAVFTLDEIHLIQPLQETFRRNDS-LCRLVEDPVFIQALPH 214
              + L  +   +     F    +    ++ +      L H
Sbjct: 182 YRTYKLVRMEQAEITGLPFTMEHAPAETILREHDRHSPLAH 222


>UniRef50_D2B9H3 DeoR family transcriptional regulator n=3 Tax=Actinomycetales
           RepID=D2B9H3_STRRD
          Length = 360

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 54/202 (26%), Gaps = 27/202 (13%)

Query: 23  VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCRLRTAGSEMQMVP 77
                    +LA   GVS RTLRRD      +   +        GY     A     ++ 
Sbjct: 16  QTHRHWPGMELADRLGVSERTLRRDVDRLRELGYPVSAARGTDGGYQLASGAVLPPLLLD 75

Query: 78  DVLIFAH-----------RSGLAGLFPGLDRRLVNALLMCDESPCVIAPA-----NPVPS 121
           D    A             +G+         ++V  L     +      A          
Sbjct: 76  DEEAVALAVGIGDAAQSGIAGMQEASLRALTKVVRVLPPRLRARVDALRAMTLSVAASGP 135

Query: 122 PSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAEH--EGHI 175
              A     + QA   + R+      R        + P R++     WYLVA        
Sbjct: 136 VVAAGVLTVVAQACRDQERLRFGYTARGAASTDREVEPYRVVALGGRWYLVAYDLTRHDW 195

Query: 176 AVFTLDEIHLIQPLQETFRRND 197
             F LD +         FR   
Sbjct: 196 RSFRLDRLIEPAATGTRFRPRP 217


>UniRef50_C8WKG8 Helix-turn-helix type 11 domain protein n=1 Tax=Eggerthella lenta
           DSM 2243 RepID=C8WKG8_EGGLE
          Length = 313

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 69/207 (33%), Gaps = 22/207 (10%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTAGS 71
            RL  I+  L+   T +  +LA +  VS RT+RRD        + +    G         
Sbjct: 4   QRLFEIVYLLMDRGTATTGELARKLEVSERTVRRDIDALSAAGVPVYMTRGKGGGVHLMD 63

Query: 72  EMQMVPDVLIFAHRSGLAGLFPGLDR-------------RLVNALLMCDESPCVIAPANP 118
              +   VL    +  +      L+R             RL       + +   +  +  
Sbjct: 64  GYVLDRSVLSEREQDDIMAALSALNRTGASDDASDETAVRLGRLFQRENVNWLDMDFSFW 123

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEHEGH 174
              P+   +F  +  A  GR  ++         R    + P +L+  + +WYL A     
Sbjct: 124 GAPPNYRAAFDTIRDAAIGRHPLSFAYFDAEGNRTERTVEPAQLMFKESSWYLRAWCRER 183

Query: 175 --IAVFTLDEI--HLIQPLQETFRRND 197
               +F L  I    +  L ETF   +
Sbjct: 184 DAWRMFKLFRIDWETLDVLPETFEARE 210


>UniRef50_C7PP77 Helix-turn-helix type 11 domain protein n=3 Tax=Sphingobacteriales
           RepID=C7PP77_CHIPD
          Length = 235

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 81/239 (33%), Gaps = 37/239 (15%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY 59
           M  ++    +   RL+ I+ RL+  + ++  +LAA+F VSVRT+ RD R      + +  
Sbjct: 1   MPPSDM---KRLTRLTAILIRLLTKKIVTASELAAKFDVSVRTIYRDIRTLEQAGVPVVT 57

Query: 60  QS--GYCRLRTAGSEMQMVPDVLI------------------FAHRSGLAGLFPGLDRRL 99
           +   GY  +        M  +                      A  SG       L R  
Sbjct: 58  EEGVGYTLMDGYRIPPVMFTESEANALITAEEIVSGNKDASFVAAFSGATAKIKALLRET 117

Query: 100 VNALLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAP 155
           +   +   +   ++  A      S      +L  ++T  + V +             + P
Sbjct: 118 MKEKVNLLQDRTIVKQAAYKEHSS--SCLSQLQISMTNAQLVKIKYMDEHAVATDRIIEP 175

Query: 156 CRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
                    W ++A         VF LD I L++PLQE F       + +    F Q  
Sbjct: 176 FAFYGTGDNWLIIAYCRLRKDFRVFRLDRIVLLEPLQEKFTP-----QKMTLSEFFQQH 229


>UniRef50_C0ZIU8 Putative uncharacterized protein n=2 Tax=Bacillales
           RepID=C0ZIU8_BREBN
          Length = 321

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 27/219 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLE---YQSGYCRL 66
            A  +  I+  L  G+ ++ ++LA    +++RT+ R         + +      +G   L
Sbjct: 3   KADNMLSILWLLKTGKRMTAKQLAEILEINIRTVYRYIDSLCASGVPIISDAGHNGGYSL 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES-------------PCVI 113
               +E  +  D+         A             L                       
Sbjct: 63  LQQFNEAPLFFDLNEQKALIHAAAFAQEAGYPFGADLHRAISKLKRYTNEEQRDAIDRHS 122

Query: 114 APANPVPSPSGALSFWRLIQ---AITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTW 165
                +  P        L +   ++     +++  +      R+   + P  L+  +  W
Sbjct: 123 IGFEVIQPPVDPSLESTLQELELSVANGYTLSIEYQKAYQTTRQMRHIDPYGLVYWKGNW 182

Query: 166 YLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRL 202
           Y+VA       I  F  D +H IQ  + +F+R       
Sbjct: 183 YIVAYCHLRSTIRSFRADRVHEIQRTEGSFQRPPEFSAR 221


>UniRef50_B5JRI7 HTH domain family n=3 Tax=Verrucomicrobiae bacterium DG1235
           RepID=B5JRI7_9BACT
          Length = 320

 Score =  117 bits (294), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 71/221 (32%), Gaps = 29/221 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRLR 67
              RL   +  L +   +    +A  F +S+RT+ RD      + + +  ++  GY  ++
Sbjct: 3   RIDRLMGTLLLLQSKRVIRAEDIAGHFEISLRTVYRDVAALSEIGIPVVAEAGVGYSLMK 62

Query: 68  TAGSEMQMVPDVLI-------------------FAHRSGLAGLFPGLDRRLVNALLMCDE 108
                  M  +                       +  S L  +   L  + ++ L   +E
Sbjct: 63  GYLLPPIMFSEEEACALGMAAMALSKTSDPSLDASMESALLKVKAALPEKQLDRLARVEE 122

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQ 163
           S              G + F  +   +  ++ + +  +           + P  L+ + +
Sbjct: 123 SVVFGWNNYGPKPMDGVVRFVDIQSCLAEQKALRISYKTGGRGEVTSREVEPLGLVHYLE 182

Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRL 202
            W+L+A     G    F  D I  ++ L E   R+      
Sbjct: 183 YWHLIAWCRLRGDYRDFRFDRIQKLEVLDERVTRHGDFDLQ 223


>UniRef50_C7Q8N4 Helix-turn-helix type 11 domain protein n=12 Tax=Bacteria
           RepID=C7Q8N4_CATAD
          Length = 328

 Score =  117 bits (294), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 33/237 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-----LMYLDLEYQSGYCR 65
            A RL  ++  L     ++  +LA E  VSVRT+ RD          +Y D     GY  
Sbjct: 2   RASRLVSLLLLLQTRGRMTAHQLAEELEVSVRTIYRDVESLHEAGIPLYGDAGPAGGYQL 61

Query: 66  LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMC-------DE 108
           L    + +  +      A             GL  +      ++  AL           +
Sbjct: 62  LAGYRTRLTGLSANEAEAMFLAALPGPAAELGLGSVMAAAQLKVKAALPPELADRSGRIQ 121

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQ 163
              ++           +     + +A+  +RR+ ++             LAP  +++   
Sbjct: 122 ERFLLDAPGWYDDGDTSPFLPAVAEAVWNQRRIRVLYRRWTEPTEVERTLAPYGIVLKTG 181

Query: 164 TWYLVAEHEGHIAVFTLDEIHLIQPLQE---TFRRNDSLCRLVEDPVFIQALPHFRF 217
            WY VAE  G    + +++I  +  L++    F R +          + + +  FR 
Sbjct: 182 KWYTVAESAGRTNTYRVNQILELTALEDDDSCFERPEDFDL---TAYWARQVAEFRT 235


>UniRef50_D2Q3M3 Helix-turn-helix type 11 domain protein n=1 Tax=Kribbella flavida
           DSM 17836 RepID=D2Q3M3_9ACTO
          Length = 323

 Score =  117 bits (294), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 27/198 (13%)

Query: 30  VRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCRLRTAGSEMQMVPDVLIFAH 84
            R+LA E  VS+RT+ RD           Y D     GY  +    +++  + +    A 
Sbjct: 21  ARELAEELEVSLRTIYRDVEALAAAGVPVYADQGRAGGYRLVDGYRTKLTGLTEQEAAAL 80

Query: 85  RS----------GLAGLFPGLDRRLVNALLMCDE-------SPCVIAPANPVPSPSGALS 127
                       GL      ++ +L+ AL            +   +           +  
Sbjct: 81  FLVGMPGPAAALGLTAETSAVELKLLAALAPDQRDRAGRLKNRFHLDMPAWYREAEDSPY 140

Query: 128 FWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDE 182
             ++ +A+   RR+T++             L P  L++   +WY+VA   G +  + +  
Sbjct: 141 LAQVAEAVLQDRRITVLYRRWEEPREVERTLDPYGLVLKHGSWYVVAAASGGVRTYRVSN 200

Query: 183 IHLIQPLQETFRRNDSLC 200
           I  +      F R     
Sbjct: 201 ILALTMTGTVFTRPADFD 218


>UniRef50_C2G2T1 Helix-turn-helix, type 11 domain protein n=2 Tax=Sphingobacterium
           spiritivorum RepID=C2G2T1_9SPHI
          Length = 331

 Score =  117 bits (294), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 77/231 (33%), Gaps = 29/231 (12%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS-- 61
                +   R   I+ +L +   +  ++LA  F VS+RT+ RD R      + +  ++  
Sbjct: 2   NDDSPKKFDRTVAILIQLQSKRVVRAQELADRFNVSLRTIYRDIRTLEASGVPIFGEAGT 61

Query: 62  GYCRLRTAGSEMQMVPDVLI-----------FAHRSGLAGLFP-------GLDRRLVNAL 103
           GY  +        M                      G+   F         + + +   L
Sbjct: 62  GYSLMEGYRLPPIMFTREEATSFVAAEKLMQQYVDQGIQEHFSSAIIKIKAVLKSMEKDL 121

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRL 158
           L   ES  +I   +   +     +   L ++I+ +++V +  +           + P  +
Sbjct: 122 LSSLESQVLIQSNSKNLNKLVPNALSVLFESISRKKKVRMHYQTIESEHPETRVIEPVGI 181

Query: 159 LIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFR-RNDSLCRLVEDP 206
               + WY++A          F  D I  +  L++ F   + S+   +   
Sbjct: 182 FHENKFWYMIAYCYLRKAYRQFRTDRIQRLDVLEDAFDMEHPSISEFLHKR 232


>UniRef50_A9B2R1 Helix-turn-helix type 11 domain protein n=2 Tax=Bacteria
           RepID=A9B2R1_HERA2
          Length = 322

 Score =  117 bits (294), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 20/222 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
              RL  II  L+  E +S  + A  F VS RT+ RD     L  + +    G       
Sbjct: 21  KVERLISIIMILLKKELVSANEFAQLFNVSKRTILRDMDALSLANIPIYAVHGVNGGYGI 80

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP-------------CVIAPA 116
             E ++   +L  +    +     GL++  +   +                     ++  
Sbjct: 81  MQEYKVDKRLLSSSDLQNILTALSGLEQIFLPEEVERTIKKIEAMVGQLALNRAIYLSFY 140

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE-- 170
                     +     ++I  +R V      +        + P  L   + TWYL     
Sbjct: 141 AWEGRSELLETLKTCQESILKKRLVLFDYTDKDGTITQRMIEPYELHFSESTWYLKGFCL 200

Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
                  F L  I  +      F   D+      +  ++  L
Sbjct: 201 DRQAYRSFKLARIDHMTMDTRVFPSRDNSTTQGHEAPYLPQL 242


>UniRef50_UPI00017450F0 Helix-turn-helix, type 11 domain protein n=1 Tax=Verrucomicrobium
           spinosum DSM 4136 RepID=UPI00017450F0
          Length = 309

 Score =  117 bits (293), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 34/214 (15%)

Query: 18  IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRLRTAGSEMQ 74
           +I  L +   ++  ++A  F +SVRT+ RD        + +  ++  GY  +R       
Sbjct: 1   MILLLQSHRVITAERVADHFEISVRTVYRDLAALGEAGVPIVAEAGVGYSLMRGYHMPPV 60

Query: 75  MVPDVLIF----------------------AHRSGLAGLFPGLDRRLVNALLMCDESPCV 112
           M  +                          +    +  + P      +N L         
Sbjct: 61  MFTEDEAAALFVSGEVTEQVADDSLRMALRSALLKVRSVLPRERHDFLNRLQPAVG--VW 118

Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTWYL 167
           ++  +             L QA+  +R   L             ++ P  L+ + + W+L
Sbjct: 119 LSLHDGEDETGRPDCLMPLQQAVVRKRCAVLHYNAGARGEVTTRQVEPLGLMYYARHWHL 178

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSL 199
           +A          F LD I   +   ++F  ++  
Sbjct: 179 IAYCRMRQDFRDFRLDRISRWEVTTDSFEGHEGF 212


>UniRef50_C6CS13 Helix-turn-helix type 11 domain protein n=3 Tax=Bacillales
           RepID=C6CS13_PAESJ
          Length = 315

 Score =  117 bits (293), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 59/223 (26%), Gaps = 33/223 (14%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY--QSGYCRLR 67
              R   I+  L   + +    LA+ +  SVRT+ RD +    M + +      GY  + 
Sbjct: 3   KTDRQLAIMLELQRSKVIRAEDLASLYETSVRTIYRDIQALSEMGVPIFGAPGHGYSLME 62

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALS 127
                          A   G   +   LD                I P       +    
Sbjct: 63  GYFLPPIGFSAEEAVALLMGADFIEQRLDGDYARVAKAAKSKIEAILPETVREESTRVRE 122

Query: 128 FWRL-------------------IQAITGRRRVTLIAEGRR---------CERLAPCRLL 159
             RL                    +AI  RR+++   + +             +AP  L 
Sbjct: 123 TMRLLNAGEPRTGLREKDILGQVRRAILERRKISFSYKKKTPEADGNRNSTREVAPYGLA 182

Query: 160 IHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
             Q  W L+        I  F L  +  +  L   F       
Sbjct: 183 FAQGNWMLIGHCGLRQDIRHFRLSRMTELAVLDTPFAMPHGFN 225


>UniRef50_D1AKN4 Helix-turn-helix type 11 domain protein n=1 Tax=Sebaldella
           termitidis ATCC 33386 RepID=D1AKN4_SEBTE
          Length = 322

 Score =  117 bits (293), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 23/233 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY----QSGYCR 65
              R+  I+  L   + +S ++LA EF VS RT+ RD      M + +E     + G   
Sbjct: 2   KTDRILNILYYLNRYKKVSAKRLAEEFEVSQRTIYRDLDILENMGIPIERKMGFEGGISI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLV-----------NALLMCDESPCVIA 114
           +     E        +    S L   +    +  +             +    +      
Sbjct: 62  IENFKLENINFSKSELTRIISILNNYYYKDSKTKLLIEKFKNIISDKEMEEQRKLDYFKI 121

Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE 170
               +       +   + +AI  +  + +            +L P  + I   + YL A 
Sbjct: 122 EEGYLMHKREKENISSIKKAIESKNIIEVKYINSDNVISERQLEPYIISIKGNSVYLFAN 181

Query: 171 H--EGHIAVFTLDEIHLIQPLQETFRRNDSL-CRLVEDPVFIQALPHFRFIQH 220
                 + +F +  I  I+   E F  +  +  ++     F     H   I  
Sbjct: 182 CLLRKELRIFRVSRILEIKITNEKFTEDPDISEKIYSQKGFFSDYIHNEIILK 234


>UniRef50_B4X1Q6 HTH domain family n=1 Tax=Alcanivorax sp. DG881 RepID=B4X1Q6_9GAMM
          Length = 238

 Score =  117 bits (293), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 69/205 (33%), Gaps = 21/205 (10%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQ--SGYCRL 66
           R A RL  I+  + A +  + + LA    VS RT+ RD        + L  Q   GY  L
Sbjct: 2   RRAERLFQIVQVIGASQWTTAQALAERLQVSERTIYRDVDHLSASGVPLYSQAGKGYALL 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGL------AGLFPGLDRRLVNALLMCDESPCVIAPANPVP 120
                   M       A  +GL      AG       R V   L       + A A+PV 
Sbjct: 62  EGYQLPPLMFSVEEWQALLTGLSMAQGWAGQRQAEALRAVQEKLAMAVPSHLRALASPVS 121

Query: 121 SPSGALSFWR------LIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYLVAE 170
           +P+             L +AI  R +V +             + P  L      W LV  
Sbjct: 122 APALPERRMLGALLDPLQRAIRERSKVRVHYRDVQEQFSKRIIWPLGLYFWGHCWTLVGW 181

Query: 171 H--EGHIAVFTLDEIHLIQPLQETF 193
                    F +D I ++Q L + +
Sbjct: 182 CELRKAFRHFRVDRIVILQTLGDRY 206


>UniRef50_B9MAM8 Helix-turn-helix type 11 domain protein n=4 Tax=Comamonadaceae
           RepID=B9MAM8_DIAST
          Length = 242

 Score =  117 bits (293), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 63/212 (29%), Gaps = 23/212 (10%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQS--GYCRL 66
           R A RL  I+  +      +   LA    VS+RT+ RD  +     + +E ++  GY   
Sbjct: 2   RRADRLFQIVQLIRGRRLSTAAFLAGRLEVSLRTIYRDVADLQHQGIPIEGEAGVGYRLG 61

Query: 67  RTAGSEMQMVPDVLIFAHRS-----------GLAGLFPGLDRRLVNALLMCDESPCVIAP 115
                   M       A  +           G+A    G   ++++ L     +      
Sbjct: 62  AGFELPPLMFSQGEANALVAAARLAQTWVDGGMAREIEGALGKILSVLPPAARAAAEAQA 121

Query: 116 AN---PVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168
                         +   L +A+     V L            R+ P       + W L 
Sbjct: 122 LYAPGSGLDTRAQAALQALREAVQSCHVVRLDYADVQGRPSLRRVRPLGCFYWGKVWTLS 181

Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198
           A          F +D I   + L E FR+   
Sbjct: 182 AWCELRDDFRGFRIDRIAAFEVLDERFRQEPG 213


>UniRef50_UPI0001788164 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001788164
          Length = 313

 Score =  117 bits (293), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 25/221 (11%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYC 64
           + + RL  ++  + A ++ +VR+LA EFG+SVRT+ RD  E       +Y       GY 
Sbjct: 2   QKSQRLIQLMMMINAKKSFTVRELADEFGLSVRTISRDLDELSGLGVPIYSVQGRGGGYR 61

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLF-----------PGLDRRLVNALLMCDESPCVI 113
            L+          +    A       L                 +  + L    +     
Sbjct: 62  LLQERMLPPISFTESEAIAVFFACQSLSYFSTLPFGEGAATALHKFYHYLPADIKEQIER 121

Query: 114 APANPVPS----PSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQTWY 166
                +      P  A     L+QA+  R+ VT+      G     + P  L      WY
Sbjct: 122 LKDRVMIHSPFRPMSADILQTLMQAVMVRQAVTISYRSSAGSSQRHIQPIGLYASSGYWY 181

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
             A    +  I  F +D +    P +    R D   + ++D
Sbjct: 182 CPAYCFTQEDIRQFRVDRMTAASPNESLSIREDIASQTLQD 222


>UniRef50_A8MKC4 Helix-turn-helix type 11 domain protein n=1 Tax=Alkaliphilus
           oremlandii OhILAs RepID=A8MKC4_ALKOO
          Length = 323

 Score =  117 bits (293), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 66/234 (28%), Gaps = 30/234 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65
              RL  II  + +  T+  + LA     S RT+ RD        + +        GY  
Sbjct: 2   RLHRLLGIIMLIDSRGTMKAKDLARILETSERTIYRDIDLLCESGIPIFSVSGPNGGYAF 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCD------------------ 107
           +        ++             G+ P  D  +   L                      
Sbjct: 62  MEDYRINANVLESGDAVNLLLSSMGIRPEEDTEMAQQLRNAIIKLENSISVEHKEEIIKA 121

Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQ 163
           +    I             +   + +++   +++ +             + P   ++   
Sbjct: 122 KERFFIDSDPWWGKRIPNKNVDLIKKSVLDLKKLKVYYRKYAGEISERIIRPYGAIVKNS 181

Query: 164 TWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSL-CRLVEDPVFIQALPH 214
            WYL A  E    I VF    I  I+ L E+F  +D+            Q + H
Sbjct: 182 EWYLAAYCETKNDIRVFKCSRIESIEVLDESFLMDDNFSLEQFWKDSKQQFIKH 235


>UniRef50_A4SMQ7 Transriptional regulator, DeoR family n=3 Tax=Gammaproteobacteria
           RepID=A4SMQ7_AERS4
          Length = 238

 Score =  117 bits (292), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 25/203 (12%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRL 66
           R + RL  + + L A + L+ R+LA    VS RT+ R   +  L  + +  ++  GY   
Sbjct: 4   RKSDRLFQLTNLLRAHQPLTARELAERLCVSERTIYRYMDDLSLAGIPVYGEAGLGYRLS 63

Query: 67  RTAGSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRLVNALLMCDESPC 111
                    + +  + A  +G+                 L   ++  L        ++P 
Sbjct: 64  EGFELAPLQLSNAELEALITGVNLVAVLTGKGLADPARALLAKIEAALPERGPGRGQTPV 123

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167
           V  P      P     + +L  AIT    + +  +     +   R+ P  L      W L
Sbjct: 124 VRVPDYRTARPEYVR-WDKLHDAITAGHWLEIDYDDALARQTRRRIYPLGLFYWGGCWTL 182

Query: 168 VAEH--EGHIAVFTLDEIHLIQP 188
            A          F +D I  ++ 
Sbjct: 183 GAWCALRLAYRDFRVDRIGSLEL 205


>UniRef50_C2C3S2 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601
           RepID=C2C3S2_LISGR
          Length = 313

 Score =  117 bits (292), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 19/203 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            + RL  ++  L++ + LS ++LA +  VSVR++ R           +Y       G   
Sbjct: 16  KSNRLFKMVYLLMSNDKLSAKELADKLEVSVRSVYRYMENLSEAGIPIYASQGRNGGISL 75

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGL--FPGLDRRLVNALLMCDESPCVIA----PANPV 119
           L        +V +       + L         D+  ++ L    +   +      P+   
Sbjct: 76  LPQFRMNSALVSEKEQNDILASLQSFASIEQSDQDTLDKLSAVFQKKPISWIEIDPSTWS 135

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEH--EG 173
            S     +   + QAI   + +T      +       + P +++   + WYL        
Sbjct: 136 NSREQKSTLAIIKQAIFQSQMLTFDYLNSKNEQLAREVYPYQVVFKDRAWYLKGYSIERE 195

Query: 174 HIAVFTLDEIHLIQPLQETFRRN 196
              +F L  +H +    +TF   
Sbjct: 196 DWRLFKLTRMHNVTI--DTFTSP 216


>UniRef50_A3I1Q3 Putative deoR-family transcriptional regulator n=1 Tax=Algoriphagus
           sp. PR1 RepID=A3I1Q3_9SPHI
          Length = 319

 Score =  117 bits (292), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 71/225 (31%), Gaps = 31/225 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ--SGYCRLR 67
              RL+ I++ L +  T+   +LA  FGVS+RT+ RD R      + +  +   GY  + 
Sbjct: 3   RIDRLTAILTHLQSKRTIRAIELANRFGVSLRTIYRDVRALEETGVPIIGEAGQGYSLVE 62

Query: 68  TAGSEMQMVPDVLIFAHRSG---LAGLFPGLDRRLVNALL----------------MCDE 108
                  M       A       L         R     L                  D+
Sbjct: 63  GYRLPPVMFTKQEALAFIVAEKLLEKSMDEESNRFFKEALYKVKAILKSEEKDLLGRVDD 122

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQ 163
              V    N       + +F  +++AI+ RR +         +      L P  +     
Sbjct: 123 KIQVFKRENHQSQFKRSKNFQLVLEAISERRVLQGHYTTFEPKKTTERILEPIGIYYSYS 182

Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQETFR--RNDSLCRLVE 204
            WYL+A          F +D    I  L  +F   ++      ++
Sbjct: 183 NWYLIAYCRLRKDYRTFRIDRFDKIHVLDGSFVLGKHPKFQEFLD 227


>UniRef50_Q163T5 Transcriptional regulator, putative n=15 Tax=Rhodobacterales
           RepID=Q163T5_ROSDO
          Length = 221

 Score =  116 bits (291), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 71/212 (33%), Gaps = 23/212 (10%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS--GYCRL 66
           R   RL  II  L  G+    + +AA+  VS RT+ RD    +   + ++ +   GY   
Sbjct: 2   RRTDRLFDIIQILRDGKLHRAQDMAAQLEVSTRTIYRDMDTLVASGVPVQGERGVGYMIT 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA- 125
                    +    + A   G+A +    D  L  A L        ++P+  +       
Sbjct: 62  EAITLPPLTLSVAEMEALNLGIAIVGEAADPDLKAAALSLGAKIDAVSPSRVIAQADEWK 121

Query: 126 -------------LSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYLV 168
                             L  AI  R++V L  +     R C  + P  +    + W L 
Sbjct: 122 FAVYPFADATRAFAHMPTLRAAIKARQKVELNYQSKRNERTCRIVRPLHMEYWGRIWTLT 181

Query: 169 AEHE--GHIAVFTLDEIHLIQPLQETFRRNDS 198
           A  E      VF +D I   Q L E F     
Sbjct: 182 AWCELKQAFRVFRVDLIETAQALPELFVDEPG 213


>UniRef50_A9DPV5 Transcriptional regulator, DeoR family protein n=2
           Tax=Flavobacteriales RepID=A9DPV5_9FLAO
          Length = 258

 Score =  116 bits (291), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 72/227 (31%), Gaps = 31/227 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY--QSGYCRLRTAG 70
           RL  I++ L +   L+  +LA ++ VSVRT+ RD R+     + +      GY  +    
Sbjct: 30  RLISILTLLRSKRLLTATELAEKYNVSVRTIYRDIRKLEEAGVPVYTIEGRGYSLIENYT 89

Query: 71  SEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP--------------- 115
                  +    A  +    +    D   VN           +                 
Sbjct: 90  IAPVQFTEKQANALITAEHIINQSKDASFVNDFKEALIKIKSVFKTSVQEKSEILSDKIH 149

Query: 116 -ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC-----ERLAPCRLLIHQQTWYLVA 169
             N     + + +   +  AIT    V +  +          ++ PC +      W L+A
Sbjct: 150 VFNWKLEETASNALSEIQIAITNFNCVEIHYKKANDYQISIRKIEPCAMYSTDNKWILIA 209

Query: 170 EHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214
                  +  F +D I   + L+E F       R      + +  P+
Sbjct: 210 WCHLRNELRAFRVDRIQSFKILEEKFE-----DRKFNISDYFRKHPY 251


>UniRef50_UPI0001B58C22 helix-turn-helix type 11 domain-containing protein n=1
           Tax=Streptomyces sp. AA4 RepID=UPI0001B58C22
          Length = 322

 Score =  116 bits (291), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 25/214 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
            A RL  ++  L      +V +LA E GV+ RTLRRD        + L  + G       
Sbjct: 2   RAERLVALLFTLHRKRAGTVGELAGELGVTERTLRRDLAALREAGVPLWSEPGRHGGIRL 61

Query: 70  GSEMQMVPDVLIFAHR--------------SGLAGLFPGLDRRLVNALLMCDESPC---- 111
               +   D L                    GL         ++  ++    +       
Sbjct: 62  VDGWRSRLDGLTSREAVALLALDVPDALAGLGLGTAVAAAHAKVSASMPAQLQEQARTVA 121

Query: 112 ---VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTW 165
               +  +    SP  A +   + +A+  ++R+ +    R       L P  L++    W
Sbjct: 122 GRFHLDASAWFTSPDDAAALPAVAKAVWTQQRLDVRYRRRDKVTRRTLDPLGLVLKAGVW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSL 199
           YLVA  +  +  + +  +  +    ETF R +  
Sbjct: 182 YLVARVDADLRTYRVSRLEGVAETGETFARPEEF 215


>UniRef50_Q2SQG3 Predicted transcriptional regulator n=2 Tax=Gammaproteobacteria
           RepID=Q2SQG3_HAHCH
          Length = 244

 Score =  116 bits (290), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 24/213 (11%)

Query: 10  RLAVRLSLIISRLV-AGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS--GYCR 65
           R A RL  I++ L       + + +A +  VS RT+ RD +  ++  + +E ++  GY  
Sbjct: 2   RRADRLFQIVTILRSRRGATTAKIIAEQLEVSERTIYRDIQALMVSGVPIESEAGVGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDR-----------RLVNALLMCDES---PC 111
           +R          +  + A   G+  +    DR           +++  L    +      
Sbjct: 62  MRGFTLPPLNFQEDELEALLLGMRMVQAWSDRAMGRAATHALQKILAELPSHLKRMGEQT 121

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167
            I           A     L  AI  +  + +  +          L P  +    +TW L
Sbjct: 122 QIYSPQFFVDAKAAQFGEELRAAIRQKTLIWVRYKRVDGVESERWLEPLGMFFWGRTWTL 181

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198
           VA          F LD +  ++  QETF     
Sbjct: 182 VAWCRLRKEYREFRLDRLLELRAAQETFETQKD 214


>UniRef50_D2BDR8 Helix-turn-helix type 11 domain protein n=9 Tax=Actinobacteria
           (class) RepID=D2BDR8_STRRD
          Length = 327

 Score =  116 bits (290), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 27/244 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL  ++  L     ++  +L+ E  VSVRT+ RD          +Y D     GY  
Sbjct: 2   RASRLLSLLLLLQTRGRMTATELSEELEVSVRTVYRDVEALSSAGVPVYADRGPAGGYRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALLMC-------DE 108
           L    + +  +      +             GL  +    + +L+ AL            
Sbjct: 62  LDGYRTRLNGLTAEEASSLFLAGLPGPAAELGLGEVAANAELKLLAALPPEPRFHASRMR 121

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLA----PCRLLIHQQT 164
               +           A     + +A+  +R + +         +     P  L++   +
Sbjct: 122 ERFHLDVPGWYRGADEAPFLGEVSEAVWDQRPLRMTYRRWGPRDVERLAHPYGLVLKGGS 181

Query: 165 WYLVAEH-EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
           WY+VA    G    + +  I   +  +  F R            +        +   +L+
Sbjct: 182 WYMVAAVGGGEPRTYRVSRIIAAEIAEGRFERPGDFELAAYWERYAADFRARMYTAEALV 241

Query: 224 TFVP 227
              P
Sbjct: 242 RVAP 245


>UniRef50_A8LGU9 Helix-turn-helix type 11 domain protein n=5 Tax=Bacteria
           RepID=A8LGU9_FRASN
          Length = 330

 Score =  116 bits (290), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 71/239 (29%), Gaps = 33/239 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYCRLRTA 69
            + RL  ++  L A    +  +LAA+F VSVRT+RRD        + L  + G       
Sbjct: 2   RSSRLMALLLHLQAHGRATAGELAAQFEVSVRTVRRDVAALAEAGVPLWSEPGPHGGIRL 61

Query: 70  GSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRLVNALLMCDESPC--- 111
               +   D L     S L                 +      +++  L     +     
Sbjct: 62  VEGWRTNLDGLTGDEASALLIAGAGGDVLGGLGLETVAAAAQTKILATLPPELRARAGRV 121

Query: 112 ----VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE---GRRCERLAPCRLLIHQQT 164
                +       S         +  A+   +R+T+            L P  L++    
Sbjct: 122 RERFHLDAPGWFGSEEPVPHLAVVAGAVWSGQRITVCYGRPDRTVERSLEPLGLVLKAGV 181

Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPL---QETFRRNDSLC----RLVEDPVFIQALPHFR 216
           WYLVA     +  + +  I         +  F R             +  F ++L  + 
Sbjct: 182 WYLVARGGSAVRSYRIGRIVEAAVRSGPEGRFTRPADFHLARWWASSNEDFARSLLRWP 240


>UniRef50_D1C7G1 Helix-turn-helix type 11 domain protein n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C7G1_SPHTD
          Length = 323

 Score =  116 bits (289), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 67/237 (28%), Gaps = 30/237 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL---EYQSGYCRL 66
            A RL  I+  L     ++ R+LA    VS RT++RD     +  + +       G   L
Sbjct: 2   RADRLLSILLLLQVHWRMTARELAERLEVSPRTIQRDMEALSMAGVPVYAERGARGGWVL 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL-----------------VNALLMCDES 109
                        L            P  D                    +         
Sbjct: 62  PDDYRTDLSGLTGLEIEALFLTKPARPLADLGYREAAEGALLKLLAALPTMRRREAERAR 121

Query: 110 PCVIAPANPVPSPSGALSFW-RLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQT 164
             ++   +              L  A+   RR  ++            + P  L+     
Sbjct: 122 QRLLVDTSGWRQGEDPAPCLPALQDAVWRDRRARIVYRRNDGTTVERVVDPLGLVAKGSL 181

Query: 165 WYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHFRF 217
           WYLVA  +G+   + +  +  ++   E  +R +              F++ LP + F
Sbjct: 182 WYLVAAVDGNPRTYRVARVQDVEVTDEPCQRPEGFDLAAYWAESTARFVRELPRYPF 238


>UniRef50_A7HP98 Helix-turn-helix type 11 domain protein n=3 Tax=Proteobacteria
           RepID=A7HP98_PARL1
          Length = 240

 Score =  116 bits (289), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 26/211 (12%)

Query: 10  RLAVRLSLIISRLVAGETL-SVRKLAAEFGVSVRTLRRDFRERLMY-LDLEYQS--GYCR 65
           R A RL  II  L   + + + ++LA +  VSVRT+ RD  +     + +E ++  GY  
Sbjct: 2   RRADRLFDIIEFLRRNKRVVTAQELAEKLEVSVRTIYRDVADLQASRVPIEGEAGLGYVL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL----------VNALLMCDESP----- 110
                    M  +  I A   G   +    D             + A+L           
Sbjct: 62  RSGYELPPLMFTEDEIEALVFGARMVRAWGDAAFTHAADAAVAKIRAVLPERLERIAAAT 121

Query: 111 -CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTW 165
              +AP         +     + +AI  RR++++  E     +    L P  L      W
Sbjct: 122 HVTVAPGRTNQKDGYSRHLSPVRRAIRERRKLSIDYEALSGEKSRRVLRPLGLAFFGPFW 181

Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFR 194
            L A          F ++ I  ++   + FR
Sbjct: 182 ILAAWCEKREDFRTFRIERIGALKVTDDIFR 212


>UniRef50_C3JIV6 DeoR-family transcriptional regulator n=2 Tax=Rhodococcus
           erythropolis RepID=C3JIV6_RHOER
          Length = 321

 Score =  115 bits (288), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 55/212 (25%), Gaps = 28/212 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRLRTAG-- 70
           R   ++S L         +LAA   V+ RT+RRD          ++  SG          
Sbjct: 8   RALQLLSLLQTHRFWHCAELAARLDVTQRTVRRDIDRLRDLGYPVDSTSGKYGGYRLATG 67

Query: 71  --SEMQMVPDVLIFAHRSGLAGLFPG----------LDRRLVNALLMCDESPCVIAPANP 118
                 ++ D    A   GL                     +  LL       V A  + 
Sbjct: 68  AHVPPLILDDDESVAVAVGLRYAAEAAIGGIEETSLRALTKIETLLPHRLRRRVSALHSS 127

Query: 119 V-------PSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167
           V              +   L  A      V               + P RL+   + WYL
Sbjct: 128 VSSIRRADDDIVDPEALSVLAAACRDHEHVRFDYRRGDGESSRRLVEPHRLVTAGRRWYL 187

Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRND 197
           VA          F LD +         F   +
Sbjct: 188 VAWDHHRSDWRTFRLDRLSEPWLAGSHFTPRE 219


>UniRef50_Q81CS6 Transcriptional regulator, DeoR family n=51 Tax=Firmicutes
           RepID=Q81CS6_BACCR
          Length = 320

 Score =  115 bits (288), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 30/225 (13%)

Query: 15  LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLE---YQSGYCRLRTAG 70
           +  I+  L +GE ++ ++++ +  +++RT+ R         + +      +G   L    
Sbjct: 7   MLAILWMLRSGEKITAKQISEKLEMNIRTVYRYIDTISTSGVPIISEPGHNGGYTLLNNF 66

Query: 71  SEMQMVPDVLIFAHR---------------SGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
            E  +  D                        L      L +                  
Sbjct: 67  IEAPLFFDFEEQTSLFHAAVFAEEAGYYGGEALNRAISKLSKYSNQEQETKINQHLTSLE 126

Query: 116 ANPVPSPSGALSFWR-LIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWYLVA 169
                SP    +F + L QA+     V ++             + P R++     WY++ 
Sbjct: 127 VISRLSPLSIETFLKELEQAVADGYSVKILYHKNGEKKLNYRLVDPYRIIYWNNKWYVIG 186

Query: 170 EHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
                  I  F +D I  +   +  F R ++         FI++L
Sbjct: 187 FCHLRNDIRSFRVDRIESLMLTENKFNRPENFSAR---DFFIKSL 228


>UniRef50_UPI0001788CE6 Helix-turn-helix type 11 domain protein n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001788CE6
          Length = 297

 Score =  115 bits (287), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 23/204 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
              RL  I   L+  + ++   LAA + VSVRT+ RD        + +    G       
Sbjct: 2   KLDRLLGITMELLTKKRVTATALAARYEVSVRTIYRDVDLINQAGIPIASYPGADGGFEL 61

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLD--------------RRLVNALLMCDESPCVIAP 115
            S   +            +  L  G++                L  ALL       +I  
Sbjct: 62  MSGFYLTRQHFSVDDFLAIYHLLKGIEGTVKGRYTAIMNKLGTLQPALLNGGCHEQIIVE 121

Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH 171
            +            ++++AI     +TL        R   ++ P +L   Q  WYL A  
Sbjct: 122 MSTSEH--ERTWVRQMLKAIESSNLITLHYTSASGSRSERQVEPLQLYWEQGVWYLEAYC 179

Query: 172 --EGHIAVFTLDEIHLIQPLQETF 193
             +    +F +  I  ++  + TF
Sbjct: 180 LLQQSKRIFRVSRITGLEISENTF 203


>UniRef50_C6J5X9 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786
           str. D14 RepID=C6J5X9_9BACL
          Length = 319

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 75/236 (31%), Gaps = 31/236 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG------- 62
            A RL  ++  L     +S R+LA    VS RT+ RD        + +  + G       
Sbjct: 2   RADRLLNLLLLLQNRGKMSSRQLAELLEVSERTIVRDIEALSAAGIPVYAERGSRGGWVL 61

Query: 63  ---YCRLRTAGSEMQMVPDVLI----FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
              Y    T     ++V  +L          G+ G F    ++L+ A          +  
Sbjct: 62  ADSYRTNLTGMRPEEIVSLLLTNHNELLKDLGIQGDFQAAYQKLLAAAPAPIRQDAEMIR 121

Query: 116 AN-------PVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAPCRLLIHQQTW 165
                       S         + +A+  +R+  +            + P  L+  +  W
Sbjct: 122 ERLHIDGAGWHASEEAFPWLSAVQEAVWTQRKQRIRYRKEDDVTERIIHPLGLIAKRNVW 181

Query: 166 YLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLC----RLVEDPVFIQALPHF 215
           Y+ AE E    +  F +  +     L+ETF R D              F   LP +
Sbjct: 182 YVAAEQEPDRELRTFRISRLEEASLLEETFVRPDGFDLAAYWEQSTARFKSELPRY 237


>UniRef50_A1T989 Helix-turn-helix, type 11 domain protein n=6 Tax=Actinomycetales
           RepID=A1T989_MYCVP
          Length = 321

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLE------YQSGY 63
            A RL  I+  L   + ++  ++A E  VS RT RRD        + +            
Sbjct: 8   RADRLVAILLLLQQRKQVTASEVALELEVSERTARRDLEALSGAGVPVYAMPGRGGGWRL 67

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESP----------CVI 113
                         +       +G A       +  +  L+     P           V+
Sbjct: 68  LGGARTDLSGLTASEARALFLVAGPASTATPSVKAALRKLVRALPEPFREQAEAAATSVV 127

Query: 114 APANPV----PSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165
                     P P        L +A+    +V L    R        + P  ++  + TW
Sbjct: 128 VDPRHWGSSQPEPRPPRFLDELQEAVIRGVQVRLGYVDRKGSQTERTVHPLGIVAKRPTW 187

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           YLV+  +     F +D +  ++   +  +R     
Sbjct: 188 YLVSNTDAGRRTFRIDRVSSVELTDDAVQRPQGFD 222


>UniRef50_A9AVG2 Helix-turn-helix type 11 domain protein n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AVG2_HERA2
          Length = 320

 Score =  114 bits (286), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 60/215 (27%), Gaps = 30/215 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY--QSGYCRLR 67
              RL  I+  L A +      LAA F +SVRT+ RD        + +      GY  + 
Sbjct: 3   RVDRLLAIVLELQAHQRRRAADLAATFEISVRTVYRDILALCEAGVPIISVPGQGYSLVE 62

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGL-----------FPGLDRRLVNALLMCDESPCVIAPA 116
                   +          GL  L                 +++  L             
Sbjct: 63  GYFLPPLQLTPAEALLIVQGLRALGHLYDPAYATAARTATTKIITVLPPPLRLHVTTMQQ 122

Query: 117 -----NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---------RCERLAPCRLLIHQ 162
                    +         L +AI  +R + +   GR             + P +L   +
Sbjct: 123 GMAIIAARDTAIQQGHLTVLREAIVAQRSLRMGYHGRTTPFAAARHTTRMVDPYQLTCVR 182

Query: 163 QTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRR 195
             WYL         +  F ++ I  +  L  TF  
Sbjct: 183 TVWYLHGFCHLRQSMRNFRVERIGDLTMLDHTFEP 217


>UniRef50_Q15PY3 Helix-turn-helix, type 11 n=1 Tax=Pseudoalteromonas atlantica T6c
           RepID=Q15PY3_PSEA6
          Length = 238

 Score =  114 bits (286), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 24/213 (11%)

Query: 10  RLAVRLSLIISRLVA-GETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS--GYCR 65
           R A RL+ I+  L    + ++ + LA    VS RT+ RD ++ +   + +  ++  GY  
Sbjct: 2   RKAERLNDIVHHLRRMHQAVTAQTLAETLEVSHRTIYRDIQDLIDSGVPILGEAGVGYVI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGL-------AGLFPGLDRRLVNALLMCDESPCV------ 112
            +       M     + A   G+          F    +     +     +P +      
Sbjct: 62  DKKYHLPPIMFDADELEAIALGIGMVSNWTDEKFAEKAQSAYRKIQATLPAPLINELHQI 121

Query: 113 -IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYL 167
               A         ++F  + + I  +  V+         +    + P  L+     W L
Sbjct: 122 STFSAPSRYKIPWQVNFTEVRECIRRKHLVSFTYTDLSDQQSQRTIRPLALISFSPIWLL 181

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198
                  G    F LD I     L   ++    
Sbjct: 182 AGWCELRGAYRNFRLDRISEFTKLNTRYQDEKD 214


>UniRef50_C1XZ61 Predicted transcriptional regulator, COG2378 n=2 Tax=Meiothermus
           RepID=C1XZ61_9DEIN
          Length = 337

 Score =  114 bits (286), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65
            A RL  I+  L     ++ R+LA    VS RT+ RD           Y +   + G+  
Sbjct: 15  RADRLLSILLILQIRGRVTSRQLAERLEVSERTIHRDMEALTAAGVPVYAERGSRGGWRL 74

Query: 66  LRTAGSEMQMVPDVL----------IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
           L    +++  +                    GL+    G   +L+ +L            
Sbjct: 75  LADYRTDLTGLKPGEVQALLVGQPNRLLEDLGLSRASEGAWIKLLASLPALYRREAESVR 134

Query: 116 ANPVPSPSGAL----SFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYL 167
                 P GA         L++A+   R++  I            L P  L+    TWYL
Sbjct: 135 GRIYIEPRGAAEPVPHLPTLLEALWRNRKLHTIYRRNDGKISERLLDPLGLVAKGSTWYL 194

Query: 168 VAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLV----EDPVFIQALPHFRFIQHS 221
           VA +      + +  +   +   E   R                  + LP +      
Sbjct: 195 VAWNGDDYRTYRVSRVQEARLSLEPAIRPPDFDLQSFWERSQTELKEQLPRYDVRVQV 252


>UniRef50_D0L3I9 Helix-turn-helix type 11 domain protein n=1 Tax=Gordonia
           bronchialis DSM 43247 RepID=D0L3I9_GORB4
          Length = 328

 Score =  114 bits (286), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 21/211 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL  ++  L     ++  +LA E  VS RT+ RD          +Y +     G+  
Sbjct: 2   RAERLLAVLMLLKTHSRMTAAQLADELDVSERTVLRDIDALSLSGIPVYAERGRHGGFAL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGL----FPGLDRRLVNALLMCDE-------SPCVIA 114
           L    +++  +         +G   L    F    R++  +L               ++ 
Sbjct: 62  LPGYRTDLSGLTLDEARTLVAGGGRLDSPAFASAMRKVAASLPDAFRTSAVRAAQRILLR 121

Query: 115 PANPVPSPSGALSFWRLIQAITGRRRVTLI-----AEGRRCERLAPCRLLIHQQTWYLVA 169
           P   V  P    +   + QA+   RR+ +      AE      L P  L++   TWYLVA
Sbjct: 122 PEGFVHPPREIDALGPVQQAVFDGRRIRVRYRRRGAERAAERVLDPIGLIVAGDTWYLVA 181

Query: 170 EHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
             +G   ++ +  +  ++ L E   R D + 
Sbjct: 182 TADGTERMYRMSRMSDVEILDEPAARADDVD 212


>UniRef50_UPI0001C3233A Helix-turn-helix type 11 domain protein n=1 Tax=Conexibacter woesei
           DSM 14684 RepID=UPI0001C3233A
          Length = 324

 Score =  114 bits (286), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 82/256 (32%), Gaps = 33/256 (12%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYC 64
           R   R+  ++  L   + ++  +LA   GV  RT+RR   +   + + +E       GY 
Sbjct: 3   RPTTRVLELLELLQDRQQVTGPELAQRLGVDHRTVRRYIAKLEELGIPVEADRGRRGGYR 62

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGL-----------AGLFPGLDRRLVNALLMCDESPC-- 111
                     M+ D    A   GL           A       ++L   L +        
Sbjct: 63  LRPGFKLPPLMLTDDEASAVVLGLLAAQSSGLTTAAPAVESALQKLRRVLPVELRERVRA 122

Query: 112 ------VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIH 161
                    PA   P+P    +   L  AI   RRV +    R       +L P  ++ H
Sbjct: 123 LEQALGFTRPAPHAPAPPQTETVLALADAIGRERRVEVAYATRDGAASTRQLDPYGVVFH 182

Query: 162 QQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP---HFR 216
              WYL A   G   +    LD I  ++ L+    +      +      +  +P      
Sbjct: 183 NGRWYLSAHDHGRGELRTLRLDRIGSVRILRRAAPKPPGFDAVEHVNRALARVPWTNEVE 242

Query: 217 FIQHSLLTFVPADSPP 232
            +  + L  +    PP
Sbjct: 243 VVLDAPLAEIRRQVPP 258


>UniRef50_C9RCX8 Transcriptional regulator-like protein n=1 Tax=Ammonifex degensii
           KC4 RepID=C9RCX8_AMMDK
          Length = 330

 Score =  114 bits (285), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 71/243 (29%), Gaps = 32/243 (13%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL------DLEYQSGYCRL 66
            R+  I   + AG+  + R+LA EFGV  RT+  D +  +  L      D      Y   
Sbjct: 8   ERILKIDELIRAGKYPNPRQLAQEFGVQERTIYLDRQFMVDRLGAPIAYDRRRGGWYYTD 67

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDES----------------P 110
                    V +  + A    +      L       LL   E                  
Sbjct: 68  PNWALPTVFVTEGELLAFLLSVEVAKRYLGTPFEKPLLSAVEKIRRSLKGQVEVNLAELQ 127

Query: 111 CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQTW 165
            V    +P          + L +AI   R+V +              + P  L   +  W
Sbjct: 128 AVSFLTSPSSVAVNERLLFDLQRAIVENRKVKINYFTASRGSWQERVVEPYHLFNLRGDW 187

Query: 166 YLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLC-RLVEDPVFIQALPHFRFIQHSL 222
           YLVA       + VF    I   Q L E F R+     +      FI            +
Sbjct: 188 YLVAFDHFRQDMRVFHTGRIDRWQVLSEVFVRDPHFSVQEWMKQAFIA--ERGEGPVEVV 245

Query: 223 LTF 225
           + F
Sbjct: 246 VRF 248


>UniRef50_Q39LZ1 Transcriptional regulator-like protein n=1 Tax=Burkholderia sp. 383
           RepID=Q39LZ1_BURS3
          Length = 326

 Score =  114 bits (285), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 77/243 (31%), Gaps = 30/243 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65
            A RL  I+  L A   ++   LA    VS RT+ RD  +     + +        G+  
Sbjct: 2   KASRLLSIMMMLQARGRMTAPALADALEVSERTILRDIDQLSTAGVPIWGDRGRNGGFQL 61

Query: 66  LRTAGSEMQMVPDVLIFAHR----------SGLAGLFPGLDRRLVNALL-------MCDE 108
                +++  + +    A             GL G+      +++ +L            
Sbjct: 62  SDGWRTDLTGLTEHEAHALILAGLPGPASELGLDGMATSARLKMIASLPPGSREHADRVA 121

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC---ERLAPCRLLIHQQTW 165
           S   +   +   +         +  A+ G  R+ +  +         L P  L++    W
Sbjct: 122 SRLHVDTVDWYRAQETPAFLREVADAVWGSYRIDVKYQSWSSVSRRELEPLGLVLKGGAW 181

Query: 166 YLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
           YLVA+  G      F L  I   +  +  F+R            +  A+  +    + L 
Sbjct: 182 YLVAKVVGKPGALTFRLANILEFEATRRRFKRPARFDLATH---WRDAMSRYETDLNRLT 238

Query: 224 TFV 226
             +
Sbjct: 239 AHI 241


>UniRef50_A5FLV0 Helix-turn-helix, type 11 domain protein n=3 Tax=Flavobacteriales
           RepID=A5FLV0_FLAJ1
          Length = 319

 Score =  114 bits (285), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 28/225 (12%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS-- 61
                +   R+  I+ +L + + +  ++LA  F  S+RT+ RD R      + +  ++  
Sbjct: 2   LDETPKRFDRIVAILIQLQSKKIVKAQELADRFECSLRTIYRDIRTLEASGVPIYSEAGV 61

Query: 62  GYCRLRTAGSEMQMV--PDVLIFAHRSGLAGLFPGLD----------------RRLVNAL 103
           GY  +        M    +V  F     L   F                    R      
Sbjct: 62  GYALMDGYRLPPVMFTREEVSSFIAAEKLMQKFTDPSLGTHYASAMYKLKAVLRSNDKDY 121

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRL 158
           L   ES  V+  A P+ + +   +   L + I  ++++ L  +           L P  +
Sbjct: 122 LSNIESRIVMQDAEPMFNDNSPNTLAVLFEGIAEKKQILLTYKTFDKEETTQRNLEPVGV 181

Query: 159 LIHQQTWYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCR 201
                 WY +           F  D I  I+     F        
Sbjct: 182 FHDNNNWYFLGYCHLRKDYRQFRTDRIQEIKKTDFDFTIEHDALE 226


>UniRef50_UPI000050FDF4 DeoR family transcriptional regulator n=1 Tax=Brevibacterium linens
           BL2 RepID=UPI000050FDF4
          Length = 332

 Score =  114 bits (284), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 71/243 (29%), Gaps = 35/243 (14%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLR 67
            RL  ++  L AG T +  +L A FGV+ R++RRD         +         GY    
Sbjct: 5   SRLLSLLGMLAAGRTYTAGELGAHFGVTPRSVRRDIASLRELGYVIESLPGATGGYRAHS 64

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLF-PGLDRRLVNALLMCDES--PCVIAPA-------- 116
                   +      A   GL+ L   GL    V +      +  P V+           
Sbjct: 65  RTVLPPLQLQTGEALATAVGLSLLNGAGLSTTDVESATAKLRTMLPPVMHKTIGDISTAV 124

Query: 117 ---NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----------RCERLAPCRLLIHQ 162
                        +      AI  R  +T   E R              R+ P R+++  
Sbjct: 125 SVLPGHEPGVDMTAVMTTTSAIASRNVLTFAHEKRRPTRSETRSETTQRRVEPVRMVVLG 184

Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQH 220
             WYL           VF LD +  I      F   D     V       A+    +   
Sbjct: 185 GHWYLYGWDLTRSDWRVFRLDRMSEIHETTFAFAPRDHPDAEV---AVSSAVTTAAYRHT 241

Query: 221 SLL 223
            +L
Sbjct: 242 VIL 244


>UniRef50_B9KCA9 Putative uncharacterized protein n=1 Tax=Campylobacter lari RM2100
           RepID=B9KCA9_CAMLR
          Length = 306

 Score =  113 bits (283), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 9/209 (4%)

Query: 11  LAVRLSLIISRLVAGE-TLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTA 69
              RL ++  +LV  E  +++++LA E  VS +T++RD +     + L       R+ T+
Sbjct: 12  KLTRLEVLYEKLVKSENGITIKELAQELNVSAKTIKRDMQGVFEPMGLIKNGRKWRIDTS 71

Query: 70  GSEMQMVPDVLIFAHRSGLAG----LFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
               +   + +I      +A      F      L++ L     +P   +           
Sbjct: 72  KDTQEQDDEKIILEVLDTMAKSAGNSFYAKAHPLLSKLSQNISNPIHTSLDAEKLEEKDL 131

Query: 126 LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEH---EGHIAVFTLDE 182
            +F  L QAI  + ++    E +   +  P +L      WYL+A           F L  
Sbjct: 132 NNFQILEQAINTKTQIVFKYENKLF-QAKPLKLAFFSGFWYLLAFDMKKRDIFKKFYLKN 190

Query: 183 IHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
           I  I   QE F+ ++SL   ++    I  
Sbjct: 191 IQNITLTQEHFQTDESLEIKLQRVNSIWF 219


>UniRef50_C7NJB0 Predicted transcriptional regulator n=1 Tax=Kytococcus sedentarius
           DSM 20547 RepID=C7NJB0_KYTSD
          Length = 238

 Score =  113 bits (283), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 71/222 (31%), Gaps = 26/222 (11%)

Query: 9   DRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG----Y 63
           D  + R  +++S L      +  +LA    ++ RT+RRD         D+    G    Y
Sbjct: 2   DSPSSRALVLLSLLQTRRAWTALELARHLDIAERTVRRDISRLRSLGYDIRSAPGPGGTY 61

Query: 64  CRLRTAGSEMQMVPDVLIFAHRSGLAGL---FPGLDRRLVNALLMCDESPCVIAPAN--- 117
             + +      ++    + +  +GL  L    P      V A L     P +   A    
Sbjct: 62  RLVPSIKIPPLLLDADEVCSLVTGLLILEAGSPDTAAAAVRAKLEQLLPPRLRHRAAATA 121

Query: 118 -------PVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWY 166
                  PV   +       L +A+  ++ +      +        + P R ++    WY
Sbjct: 122 LATQVITPVAKTADWHLLGLLAEAVAQQQHLQFTYTDQHGEVTERLVNPYRHVLRNGIWY 181

Query: 167 LVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDP 206
           LVA         +F LD IH          R+  L       
Sbjct: 182 LVAFDTKRDDWRLFRLDRIHDA--SPRPAPRDFDLPDFPPTS 221


>UniRef50_Q1GFN4 Helix-turn-helix type 11 n=8 Tax=Rhodobacteraceae
           RepID=Q1GFN4_SILST
          Length = 229

 Score =  113 bits (283), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 67/212 (31%), Gaps = 23/212 (10%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRL-- 66
           R   RL  II  L  G+    + +AA   VS RT+ RD    +   + +E + G   +  
Sbjct: 2   RRTDRLFEIIQILRDGKLHRAQDIAARLEVSTRTIYRDMDTLVASGVPVEGERGVGYMVR 61

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA-----------LLMCDESPCVIAP 115
                    +    + A   G+A +    D  L +A           L +   +      
Sbjct: 62  EAITLPPLTLTPSELEALNLGMAIVAEAADPELKSAAESLAAKVDAVLPVETVAEAEAWK 121

Query: 116 ANPV---PSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168
                   +  G      L  AI  R+++ L             + P  +    + W L 
Sbjct: 122 FAVYPFGDAARGFAWMPTLRAAIKARQKLALRYRRIDQTLTERVIRPLHMEYWGRVWTLT 181

Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198
           A     G   VF +D I   + L E F     
Sbjct: 182 AWCETRGDFRVFRVDLIETAEALPELFVDEPG 213


>UniRef50_B2UBT2 Helix-turn-helix type 11 domain protein n=43 Tax=Proteobacteria
           RepID=B2UBT2_RALPJ
          Length = 232

 Score =  113 bits (282), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 61/212 (28%), Gaps = 23/212 (10%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQS-- 61
             R  R A RL  I   L      +   LA   GVS RT+ RD R+  +  + +E ++  
Sbjct: 1   MPRMTRRADRLFQIAQILRGRRLTTAAMLADRLGVSERTVYRDIRDLSVSGVPIEGEAGI 60

Query: 62  GYCRLRTAGSEMQMVPDVLIFAHRSG-----------LAGLFPGLDRRLVNALLMCDESP 110
           GY           M     + A  +G           +A        +L+ AL     S 
Sbjct: 61  GYRMRAGYDLAPLMFTADEVEALVAGARMIKAWSGGTMADSVEAALEKLMGALPAERRSE 120

Query: 111 CV---IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQ 163
                I              F  L  A+       L             + P  L    Q
Sbjct: 121 AETTRIFAPGYGMGSEVKQVFDTLHAALGRHAVARLAYRDAQGQLTERCIQPLGLFFWGQ 180

Query: 164 TWYLVAEH--EGHIAVFTLDEIHLIQPLQETF 193
            W + A          F LD    +  L+  F
Sbjct: 181 VWLVAAWCEHRQDYRTFRLDRCVKVDILERHF 212


>UniRef50_C0ZA21 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0ZA21_BREBN
          Length = 306

 Score =  113 bits (282), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 22/216 (10%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL----EYQSGYCR 65
              RL  ++  +    T++ ++LA  F VS+RT+ RD  +     + +        GY  
Sbjct: 2   RVDRLLSMLLIISKKGTVTGKELAEHFEVSIRTIYRDIEKLGEAGIPIASIGGKGGGYYI 61

Query: 66  LRTAGSEMQMVPDVLI---------FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116
           +     +   +               +   G    F  +  ++ N L     +  +    
Sbjct: 62  MEDYNVDNLFLNKDEASTFMAIMNNLSFLFGKNTTFHDIVLKIENTLKQEKNTSKLDINL 121

Query: 117 NPVP-SPSGALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLVAEH 171
           +              L  AI   + V      R        + P ++      WYLV   
Sbjct: 122 SHFSMENELKEYLLLLNNAIEKNKLVVFEYINRSMEYLERTVEPFQITFSAGQWYLVGFC 181

Query: 172 --EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
                   F L  I  ++   E F + D   + +E+
Sbjct: 182 KERNGYRRFKLVRIKNLKM-GEDFEKKDISNKEIEE 216


>UniRef50_C4RL45 DeoR-family transcriptional regulator n=1 Tax=Micromonospora sp.
           ATCC 39149 RepID=C4RL45_9ACTO
          Length = 341

 Score =  113 bits (282), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 59/195 (30%), Gaps = 26/195 (13%)

Query: 29  SVRKLAAEFGVSVRTLRRDFRERL-MYLDL---EYQSGYCRLRTAGSEMQMVPDVLIFAH 84
           S  +LA   GV+VRT+RRD      +   +   + ++GY     A     ++ D    A 
Sbjct: 22  SGTELADRLGVTVRTVRRDVDRLRELGYPVHASQGRAGYRLGAGAVLPPLLLDDDEAVAV 81

Query: 85  RSGLAGLFPG-----------LDRRLVNALLMCDESPCVIAPANPVP-----SPSGALSF 128
             GL                    +L   L               V         G    
Sbjct: 82  AIGLRTAAASAVTGIDETALRAMSKLEQVLPARLRHQVAAVQHATVRAGHPGPTVGPDVL 141

Query: 129 WRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDE 182
             +  A   R R+         GR    + P  L+   + WYL+A     G    F +D 
Sbjct: 142 ATISTACYRRERLRFDYTDHHGGRSNRLVEPHTLVSFARHWYLLAWDTGRGDWRCFRVDR 201

Query: 183 IHLIQPLQETFRRND 197
           +    P    F R +
Sbjct: 202 LRPWTPTGPRFARRE 216


>UniRef50_Q0REC1 Putative DeoR family transcriptional regulator n=1 Tax=Frankia alni
           ACN14a RepID=Q0REC1_FRAAA
          Length = 374

 Score =  112 bits (281), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 75/253 (29%), Gaps = 32/253 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL  I   L A E L+  ++A   GVS RT+RRD          +Y +     G+  
Sbjct: 2   RASRLIAITMMLQAHERLTAAQIAGRLGVSDRTVRRDLDVLGELGVPLYSERGRGGGWRL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRS----------GLAGLFPGLDRRLVNALLMCDESPCVI-- 113
           +    S++  +                    GL        R+L+ AL            
Sbjct: 62  VHGWRSDLSGLTADEAHGLFLVAGPAARPGLGLEPAVDSALRKLLAALPAATRPDAEAVT 121

Query: 114 ---------APANPVPSPSGALSFWRLIQAITGRRRVTLIA------EGRRCERLAPCRL 158
                         V  P+   +   +++A    R            E  R   + P  L
Sbjct: 122 ATLLVDPGRWGGPAVTPPAPLATLAGILRAGHRARVRYAGRAARAAGEPARDRDVDPYGL 181

Query: 159 LIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218
           +     WYLVA  +       +  I  +  L E   R   L          +A+    + 
Sbjct: 182 VQKGDVWYLVAGTDAGPRTLRVSRIESVTELDEPANRPADLDLPALWAQSRRAVEERMWA 241

Query: 219 QHSLLTFVPADSP 231
               L   PA  P
Sbjct: 242 YRVRLRADPAIVP 254


>UniRef50_C7PEN6 Helix-turn-helix type 11 domain protein n=1 Tax=Chitinophaga
           pinensis DSM 2588 RepID=C7PEN6_CHIPD
          Length = 318

 Score =  112 bits (280), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 39/249 (15%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER---LMYLDLEYQSGYCRLR 67
              RLS I+ +L   + +   ++A  F +S+RT+ RD R      + +  E  +GY  + 
Sbjct: 3   RIDRLSAILIQLQGKKIVKAAEIAERFNISLRTVYRDVRALQEAGVPVGAEAGTGYYLVE 62

Query: 68  TAGSEMQMVPDVLIFAHRSG----------------------LAGLFPGLDRRLVNALLM 105
                  M       A  +G                      +  +  G ++  + +L  
Sbjct: 63  GYHLPPVMFSREEAAALLTGEKLMANLSDHSNRKEFSNAMQKIKAVLRGSEKDFLESLED 122

Query: 106 CDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA-----EGRRCERLAPCRLLI 160
                 V++   PV           +  ++  +  + L       E      + P  ++ 
Sbjct: 123 NI---AVVSRRPPVGEEFPNRFLSDIQHSLGKQLILQLDYFALHNETHTKRDVEPIGIIF 179

Query: 161 HQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI 218
               W+L+A          F +D I  +    + + +   +        ++     +   
Sbjct: 180 MNGYWHLIAWCRLRHGYRDFRMDRIKNVGVSADNYDKQRHITLK----EYMDRYGEYETQ 235

Query: 219 QHSLLTFVP 227
            H +    P
Sbjct: 236 AHMVKIRFP 244


>UniRef50_Q0RND8 Putative deoR-family transcriptional regulator n=1 Tax=Frankia alni
           ACN14a RepID=Q0RND8_FRAAA
          Length = 420

 Score =  112 bits (280), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 72/277 (25%), Gaps = 59/277 (21%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRLRTA 69
            + RL+ ++  L A    +  +LAAE  VSVRT+ RD        + L  + G       
Sbjct: 2   RSSRLTALLLHLQAVRRATAAQLAAELEVSVRTVHRDIAALQDAGVPLWTEPGRAGGVRL 61

Query: 70  GSEMQMVPDVLIFAHRSGL---------------AGLFPGLDRRLVNALLM-------CD 107
               +   D L     + L               AG+      +++  L           
Sbjct: 62  MDGWRTSLDGLTGDEAAALLLIGAGPEVLAGLGLAGIAAAARTKVLATLPPRPRVQAGQV 121

Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---------------------- 145
               ++                 L +A+   RRV L                        
Sbjct: 122 RQRFLLDAPGWFHREEAVPHLATLAEAVWAGRRVDLRYARVGDDPAGAAGAAGAAGAAGA 181

Query: 146 --------------EGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQE 191
                               R+ P  L+    TWYL A H G +  + +  I       E
Sbjct: 182 AGAAGAAGAAGEEAGRGVARRVDPLGLVCKAGTWYLAARHRGDVRSYRVGRISQANLRAE 241

Query: 192 TFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPA 228
           TF R D                         L   PA
Sbjct: 242 TFDRPDGFDLAAWWRAGSDEFARSLLRWTCRLRLSPA 278


>UniRef50_A9KIF8 Helix-turn-helix type 11 domain protein n=1 Tax=Clostridium
           phytofermentans ISDg RepID=A9KIF8_CLOPH
          Length = 307

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 18/199 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYCR 65
              RL  I   L+  +  S   LA  F VS RT+ RD     L  + +        GY  
Sbjct: 2   KIDRLLAITIYLLNHKRTSAGDLANRFEVSTRTIMRDIDSLCLAGIPVISTFGVDGGYEI 61

Query: 66  LRTAGSEMQMVPDV---LIFAHRSGLAGLFPGLDR----RLVNALLMCDESPCVIAPANP 118
           ++T   E Q+  ++    I A   GL+  +P  +       + +L        VI     
Sbjct: 62  MKTFQMEKQVAGEIDYSFILAALKGLSTAYPDRELENTIEKLQSLGENSTQSIVIDLGVA 121

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--HE 172
                       L  AI     V           +   + P  ++     WYL+A     
Sbjct: 122 NEHKGINSLLSMLSHAIKIEHIVEFTYTNTDNITKSAVVEPVSIIYKWYHWYLLAYQPSH 181

Query: 173 GHIAVFTLDEIHLIQPLQE 191
               ++ L  +  +    +
Sbjct: 182 ETYCLYKLIRMEHLTIHDQ 200


>UniRef50_D1A246 Helix-turn-helix type 11 domain protein n=3 Tax=Actinobacteria
           (class) RepID=D1A246_THECD
          Length = 317

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 67/212 (31%), Gaps = 29/212 (13%)

Query: 15  LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ---SGYCRLRTAG 70
           +  ++S L         +LAA+ GVS RTLRRD      +   ++ +    G  +LR+  
Sbjct: 1   MLRLLSLLQTRRYWPGPELAAKLGVSERTLRRDIDRLRELGYPVDAERGVGGGYQLRSGT 60

Query: 71  -SEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP--------- 120
                ++ D    A   GL     G     V    +   +  +      +          
Sbjct: 61  AMPPLLLDDEEAVAIAVGLRSAAAGAVGAGVGETSVRALAKVIQVMPPRLRRRVQALQDY 120

Query: 121 ---------SPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTWYL 167
                        A +   L Q      R+      R        + P RL+   + WYL
Sbjct: 121 TEPGTGGAGPAVDAEALTVLAQCCRDGERLRFAYRARDGRQSARTVEPHRLVALDRRWYL 180

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197
           VA         VF +D +    P  E FR   
Sbjct: 181 VAWDLERLDWRVFRVDRLGDPLPAGERFRPRP 212


>UniRef50_C9LWR7 HTH domain protein n=1 Tax=Selenomonas sputigena ATCC 35185
           RepID=C9LWR7_9FIRM
          Length = 308

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 84/239 (35%), Gaps = 31/239 (12%)

Query: 3   QAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD------ 56
           Q +   D  + RL  +  RL  GE LS R+LA ++ VS +T++RD      YL       
Sbjct: 2   QTDTHADNRSYRLLDLYKRLQQGEALSKRELADQYRVSEKTVQRDIEGLREYLAGEQSYL 61

Query: 57  ---LEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGL-DRRLVNALLMCDES--- 109
               + ++G  R+    +E     +V         +  FP    +RL+  LL        
Sbjct: 62  EVVYDKEAGGYRISRESAEGLQPEEVFAVCKILLESRPFPKAVMQRLLGKLLSQVSREKR 121

Query: 110 ----PCVIAPANPVPSPSGALSF----WRLIQAITGRRRVTLIAEG----RRCERLAPCR 157
                 +    +    P          WRL  AI  +R  +              + P  
Sbjct: 122 DVVEKLIAQETHHYTEPQHGRDVIPALWRLAAAIREQRITSFSYTRLDGVCHERVVKPVA 181

Query: 158 LLIHQQTWYLVAEHEGH----IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQAL 212
           +L  +  +YL+A +         VF +D +  I   +E F          ++  F + +
Sbjct: 182 ILFSEFYFYLIAYYADDSADYPIVFRIDRMEKISVKKERFSVP--YRERFKEGEFRKRI 238


>UniRef50_C9MZ16 HTH domain protein n=1 Tax=Leptotrichia hofstadii F0254
           RepID=C9MZ16_9FUSO
          Length = 315

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 84/244 (34%), Gaps = 29/244 (11%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMY------ 54
           M    +  +  ++R+  II RL   E L+   LA EF V ++T++RD      Y      
Sbjct: 1   MAGKNQNSEEKSIRILKIIKRLYQKEILNGTDLANEFNVDIKTVQRDIETLRAYFLEENG 60

Query: 55  --LDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALL-------M 105
             +          L     +     ++L  +     +  F   + + +   L        
Sbjct: 61  AEIKYSKSKKGYYLEENSEKSFTNEEILAISKIILESRAFNKNETQTLINKLINHSSGND 120

Query: 106 CDESPCVIAPANPVPSPSGALSF-----WRLIQAITGRRRVTLIA----EGRRCERLAPC 156
            +    +I        P           W L Q I  +  + +      +  +   + P 
Sbjct: 121 RETIKGLINSEKSNYIPLQHGQNLLTVIWNLAQHIKNQELININYTTKDKQGKNYNIKPL 180

Query: 157 RLLIHQQTWYLVAEHEGH---IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
            ++  +  +YL+A  E      A+F +D I  I+   + F+   +  +  +D  F + + 
Sbjct: 181 SVMFSEYYFYLIAYIENKEEYPAIFRIDRITEIENTGKKFKI-LNYSKKFKDGEFRKYI- 238

Query: 214 HFRF 217
           HF  
Sbjct: 239 HFMH 242


>UniRef50_B1HQ46 Putative uncharacterized protein n=2 Tax=Bacillaceae
           RepID=B1HQ46_LYSSC
          Length = 314

 Score =  112 bits (279), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 30/208 (14%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL  ++ ++   +  +++++A E GVS RT+ RD  E       +Y +     GY  
Sbjct: 3   KAQRLIQLMMKVNERKKFTIQEMAEECGVSRRTMIRDLMELSELGVPLYSEAGPNGGYRV 62

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------------------VNALLMCD 107
           LR          +    A       L                          +   +   
Sbjct: 63  LREKVLPPISFTEHEAIALFFACQSLHNYKALPFKNEVNTALDKFFYYLSSELKQKIESM 122

Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC--ERLAPCRLLIHQQTW 165
           +   +                  L+ A   ++ VT++ E        + P  +      W
Sbjct: 123 QQRLLFWVPPHELEVPFL---KELLDAALQQQVVTILYESATTKNRTIQPLGIYTMNGLW 179

Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQE 191
           Y  A         VF +D +      ++
Sbjct: 180 YCQAYCFLAEDYRVFRIDRVKDFSFAED 207


>UniRef50_A9E8Y8 Helix-turn-helix, type 11 n=1 Tax=Oceanibulbus indolifex HEL-45
           RepID=A9E8Y8_9RHOB
          Length = 220

 Score =  112 bits (279), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 64/205 (31%), Gaps = 19/205 (9%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDL--EYQSGYCRLRTA 69
            RL  +I RL  G+      LA  FGVS RT+ RD  +     L +      GY      
Sbjct: 8   DRLVALIDRLRNGQVHRAEDLARRFGVSTRTIYRDMDKLSASGLPVAGTRGEGYRITPAI 67

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRL------VNALLMCDESPCVIAPANPVPSPS 123
                 +    + A   GLA      D  L      + A          IA         
Sbjct: 68  TLPPLTLTPAELEALNLGLAVAAEVGDPALQDAAETLAAKFDAVLPTETIAEGAAWSQAL 127

Query: 124 GA--------LSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHI 175
            +             L  A+  R+++ +       + + P ++    + W L A  EG  
Sbjct: 128 RSQGKATRVFAHLPVLRAAVQARQKLRIGVADSGSQVVRPLKVENWGRFWVLTAWCEGTE 187

Query: 176 A--VFTLDEIHLIQPLQETFRRNDS 198
               F LD I   + L E F     
Sbjct: 188 RLATFRLDLIESAEALPELFVDEPG 212


>UniRef50_Q2LTY7 Predicted transcriptional regulator, DeoR family n=2 Tax=Syntrophus
           aciditrophicus SB RepID=Q2LTY7_SYNAS
          Length = 346

 Score =  111 bits (278), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 15/221 (6%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL-EYQSG 62
           E+   +  +RL  I+   +  + +S   L+  F ++ RT++RD          + E Q G
Sbjct: 36  EKNVQKRLIRLGQILRVFLDKDRVSSIWLSRNFQITPRTIQRDLAALKESGFPIHEIQKG 95

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAP 115
             RL     +   V D    A    L  +       F      L N+L     S  V   
Sbjct: 96  VYRLGKDLIKNLEVFDETELALVITLRNVVGQLGRPFQKAADGLFNSLYDAASSMPVYVR 155

Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERL--APCRLLIHQQTWYLVAEHEG 173
                 P  +    R++++I  ++      +  +  ++   P R++     WYLV +  G
Sbjct: 156 -MDESIPLDSSLLNRIVKSIRLKKIAGFYYKSGKPHQVNMEPYRVVHFGGFWYLVGKDTG 214

Query: 174 H--IAVFTLDEIHLIQPLQETFRR-NDSLCRLVEDPVFIQA 211
              I  + LD I   +  +  FR+  ++L   ++    I  
Sbjct: 215 DSVIKRYALDRISDFKMARTPFRKIPENLDSAIQGSANIWF 255


>UniRef50_A6GCU0 Putative transcriptional regulator n=1 Tax=Plesiocystis pacifica
           SIR-1 RepID=A6GCU0_9DELT
          Length = 230

 Score =  111 bits (278), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 61/217 (28%), Gaps = 27/217 (12%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEY 59
           M        R A RL  I+S L      +   LA    VS RT+ RD R+     + +E 
Sbjct: 1   MATTM----RRADRLFQIVSLLRGRRMATAAWLAERLEVSERTIYRDIRDLAGSGVPIEG 56

Query: 60  QS--GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRL--------------VNAL 103
           ++  GY   ++      M     I A   G   +    D  L              +   
Sbjct: 57  EAGVGYRLAKSFELPPMMFSVDEIQALVLGARMVETWGDDELRGAARRVLDKTTAVLPEE 116

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLL 159
                    +   +   +           + +  RR++               + P  L 
Sbjct: 117 QRGIIDETALFSMSFRVTDEVRAHLAVARRGVHERRKLEFSYVAEAGATSERIVRPLGLY 176

Query: 160 IHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFR 194
               +W L A          F LD +  +  L   F 
Sbjct: 177 FWGPSWSLGAWCELREDFRNFRLDRVERMALLDAQFE 213


>UniRef50_Q65MX4 Putative uncharacterized protein n=2 Tax=Bacillus
           RepID=Q65MX4_BACLD
          Length = 315

 Score =  111 bits (278), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 30/210 (14%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
            A RL+ +I  +   +  +V +LA EFGVS RT+ RD +E       +Y +     GY  
Sbjct: 3   KAKRLNEMIMMVNRKKRFTVGELAREFGVSKRTVLRDLQELSEMGVPLYSETGPHGGYQV 62

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGL-----------FPGLDRRL-------VNALLMCD 107
           L           +    +    +  L           +  + ++        +   +   
Sbjct: 63  LNERILPPIAFSENEAISIFFAIDALKHYISLPFDAQYASIKKKFYLNLSGDIRDAIDSM 122

Query: 108 ESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG---RRCERLAPCRLLIHQQT 164
           +         P            L++A   ++ + +  E         + P  +  +Q  
Sbjct: 123 KDRVAFY--TPYEQTDDIPVLKVLLEAAVQQKVLIIEYEANGASSKRSIQPIGIYANQGK 180

Query: 165 WYLVAEH--EGHIAVFTLDEIHLIQPLQET 192
           WY  A         +F  D I   +  +  
Sbjct: 181 WYCPAYCFLRKDYRIFRCDRIKRAELDEHK 210


>UniRef50_Q11UB6 Transcriptional regulator, DeoR family n=7 Tax=Bacteria
           RepID=Q11UB6_CYTH3
          Length = 230

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 66/216 (30%), Gaps = 25/216 (11%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL--EYQSG 62
               +   RL+ II++L     L+  +LA  F VSVRT+ RD R      + +  E   G
Sbjct: 3   DNDTKRLSRLTAIITQLQTKRLLTATELANRFSVSVRTIYRDIRALEQSGVPILTEEGKG 62

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSP 122
           Y  +        M  +    A       +    D   V       +    +         
Sbjct: 63  YTLMEGYRIPPVMFTESQANALILAEQLVLKNKDASFVQHYSEAIDKIKAVLGHPIKDKV 122

Query: 123 SGALSFWRLIQ----------------AITGRRRVTLIA----EGRRCERLAPCRLLIHQ 162
           +      R  Q                A+T      +      E +    + P  LL  Q
Sbjct: 123 NLLAERTRFDQNTNRERNSKDLSDLQFALTNFYLTRIEYINEAEAQTDRLIEPFALLSTQ 182

Query: 163 QTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRN 196
           + W LVA          F LD I  ++   E F  +
Sbjct: 183 ENWLLVAWCRLRNEFRYFRLDRIKKLEIQTEKFNPH 218


>UniRef50_Q1GC92 Helix-turn-helix type 11 n=19 Tax=Alphaproteobacteria
           RepID=Q1GC92_SILST
          Length = 252

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 74/218 (33%), Gaps = 26/218 (11%)

Query: 2   TQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL---MYLDLE 58
           T+   + +RL  RL   + +L     ++  +LA + GVS RT+ RD          +D  
Sbjct: 20  TRQMTKTERL-FRLMQTLRQLP--PPVTAEQLAQDLGVSARTIHRDIDALRALGAVIDGA 76

Query: 59  YQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-----------RRLVNALLMCD 107
              G+  +  A           + A   GL  +    D           R+L   L    
Sbjct: 77  AGFGFTLIEDATLPPLGFGATELEALVLGLCEVQQKGDPDLAEAARTALRKLRARLPQSQ 136

Query: 108 ESP---CVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLI 160
                  V++  +  P  +  +    L QA    R V               + P  L+ 
Sbjct: 137 AKRLQHAVLSAHSFAPPLTPTVDAAELRQATWDEREVGFDYVDVKGAVTQRHVKPLGLVY 196

Query: 161 HQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRN 196
             ++  LVA         VF LD +  ++  Q +FR +
Sbjct: 197 FDKSSVLVAWCRLRQDFRVFRLDRMTSLEVTQISFRPH 234


>UniRef50_D1B1H8 Putative uncharacterized protein n=1 Tax=Sulfurospirillum
           deleyianum DSM 6946 RepID=D1B1H8_SULD5
          Length = 307

 Score =  111 bits (277), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 11/221 (4%)

Query: 1   MTQAER-RHDRLAVRLSLIISRL-VAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLE 58
           M + ER  ++    R++ I   L  + + +S++ L+ +  VS +T++RD  E L      
Sbjct: 1   MPKVERPSNNSKWERINTIYELLKQSCDGMSIQDLSKQMDVSTKTIQRDLYEVLGEYGAV 60

Query: 59  YQSGYCRLRTAGSEMQMVPDVLIFAHRSG-----LAGLFPGLDRRLVNALLMCDESPCVI 113
            Q    +L +  +E  +  +  I               F G    L+  +    E P   
Sbjct: 61  KQGRMWKLDSKKAEDNLNSNERIILGILDEMAKNAGSSFYGKAHSLLKQISQQLEHPIFA 120

Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAE--- 170
              +     S    F  L +AI  +  V+   +      + P +L      WYL+A    
Sbjct: 121 NVESESLDESHIELFSLLEKAIKTKHTVSFTYKKHLF-DVQPLKLAFFDSFWYLLALDIQ 179

Query: 171 HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
            +     F L  I+ +     TF  N +L   ++    I  
Sbjct: 180 DDNKFKKFYLKSINDLTIQDNTFSINTTLEERLKKANSIWF 220


>UniRef50_B1QLR3 HTH domain protein n=9 Tax=Clostridium RepID=B1QLR3_CLOBO
          Length = 309

 Score =  110 bits (276), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 20/215 (9%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
              RL  I+  ++  + +S   LA  F VS RT+ RD          +Y ++  + GY  
Sbjct: 2   KIERLLGILFYIINRDNVSANNLAEHFNVSRRTILRDINTLTLAGIPIYSEVGSKGGYSI 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRR-------LVNALLMCDESPCVIAPANP 118
                   +++ +         L  L      +        V  +     +   +     
Sbjct: 62  NPDYRLNEKIIDNANSEYMLLALQSLKSVYGEKKVHETYEKVKHIYSDKNNNHALNIDFS 121

Query: 119 V--PSPSGALSFWRLIQAITGRRRVTLIAEGRR--CERLA--PCRLLIHQQTWYLVAEHE 172
           +   + S       L +AI   + V+            +      +L    +WY      
Sbjct: 122 IVNENRSITFYISMLKEAIQHNKTVSFQYTNLNGDTRIVKCNIIHVLYKWYSWYAFGYDL 181

Query: 173 GH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVED 205
                 +F +  +  ++  +  F  +  + +L++D
Sbjct: 182 EKSDFRMFKIVRMRNLEISEMYFDNDYDVTKLLDD 216


>UniRef50_D1C4L3 Helix-turn-helix type 11 domain protein n=1 Tax=Sphaerobacter
           thermophilus DSM 20745 RepID=D1C4L3_SPHTD
          Length = 354

 Score =  110 bits (275), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 27/245 (11%)

Query: 10  RLAVRLSLIISRLVAGE-TLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ----SGYC 64
           + A R+  IIS++ A     + R LA  + +S R + +D +     L LE +     GY 
Sbjct: 18  QRASRILEIISKISAAPNQWTRRSLAEHYEISERQITKDLQVIRHGLRLELERQPSGGYY 77

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLFP---------GLDRRLVNALLMCDESPCVIAP 115
                             A                         + +++  +  P +   
Sbjct: 78  FKTLPRLPAVSYSLAEALAIFLAAQAGRRLAGIPHEELSAAIARLRSIMPRELQPLLQDD 137

Query: 116 ANPVPSPSGALSFWRLIQ----AITGRRRVTLIAE------GRRCERLAPCRLLIHQQTW 165
              VP         R+++    AI  R+ V L+         R   R+ P  ++ + Q+W
Sbjct: 138 GAAVPPVPRNRHRERILEVLTRAIAARKSVDLVYHPASRPGERTQRRVDPYAVVPNAQSW 197

Query: 166 YLVAEHEGHI--AVFTLDEIHLIQPLQETFRRNDSLC-RLVEDPVFIQALPHFRFIQHSL 222
           +L+          +F +D +  +      F  +            +       +  +  +
Sbjct: 198 HLIGWCHLRCAVRIFKVDRVEDVTVTDIRFTPDPEFDLNEFLTAGWGVTRGTDQPPEEIV 257

Query: 223 LTFVP 227
           L F P
Sbjct: 258 LRFTP 262


>UniRef50_B1I4N6 Regulatory protein, DeoR n=1 Tax=Candidatus Desulforudis
           audaxviator MP104C RepID=B1I4N6_DESAP
          Length = 336

 Score =  110 bits (274), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 62/218 (28%), Gaps = 31/218 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL-----EYQSGYCRLRT 68
           R+  I + +      SV +L  EF  S RT+ RD       L+        + GY   R 
Sbjct: 19  RIYHIDALVRVRTFPSVARLVEEFETSRRTIERDLEYLRDQLNAPLKYDRTRGGYYYARD 78

Query: 69  AGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGALSF 128
                  + +  + A   G   L           +    E  C+  P       S     
Sbjct: 79  FQLPPFTLSEGEVLALFLGSKLLSQYRGTPFEKLITDAFEKICLAMPETVSLDFSLVNQT 138

Query: 129 WRLI-------------------QAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQT 164
                                  +A+  R  V L             R+ P  L  HQ  
Sbjct: 139 ISFAVERPRGDEQHLLHLQELLGRALRERCTVDLDYYSASRDADTSRRVDPYHLRHHQGA 198

Query: 165 WYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           WYL+        + +F LD I  ++     F  + +  
Sbjct: 199 WYLIGHCHFRNEVRMFALDRITNLRVTDAHFTPDPAFD 236


>UniRef50_UPI0001B4CEC8 DeoR family transcriptional regulator n=1 Tax=Streptomyces
           hygroscopicus ATCC 53653 RepID=UPI0001B4CEC8
          Length = 336

 Score =  109 bits (273), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 65/215 (30%), Gaps = 29/215 (13%)

Query: 15  LSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEY----QSGYCRLRTA 69
           +  I+  L     L    LA    VSVRT+ RD        + +        G   L   
Sbjct: 1   MLSIMLLLQTHGQLPAATLAERLEVSVRTVMRDVEALSAAGVPVYTVRGPHGGIALLPGF 60

Query: 70  GSEMQMVPDVLI----------FAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPV 119
            +++  +                    GL        R+++ AL         +A    +
Sbjct: 61  RTDVTGLTADEARALFVLLSDRAYADLGLGSAIGSALRKVMAALPAAYRPDADLASRRIL 120

Query: 120 PSPSGALS---------FWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTW 165
             P                 L +A+   RR+ L          R   + P  L+     W
Sbjct: 121 IDPVRWRGGPSRPAADGLGVLQRAVFTDRRLRLRYRHGEDGRVRSYTVDPYGLVHKAGVW 180

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           YLVA+H G   +F  D       L E  +R D L 
Sbjct: 181 YLVADHRGEPRLFRADRALSSGVLDEPVQRRDGLE 215


>UniRef50_Q0AKB6 Helix-turn-helix, type 11 domain protein n=1 Tax=Maricaulis maris
           MCS10 RepID=Q0AKB6_MARMM
          Length = 226

 Score =  109 bits (273), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 62/213 (29%), Gaps = 24/213 (11%)

Query: 10  RLAVRLSLIISRLVAG--ETLSVRKLAAEFGVSVRTLRRDFRERL---MYLDLEYQSGYC 64
           R A RL  I+  L       ++  ++   F VS RT+ RD    +     +D E   GY 
Sbjct: 4   RRAERLIRIVQALREAAPGAVTAHEMGHRFEVSERTIYRDIAHLIGSGAPIDGEAGVGYV 63

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP---- 120
                           + A   G   +    D+ L +A            P +       
Sbjct: 64  LRPGFDLPPLTFSFEQLDALALGARLVKATGDKDLASAANEALAKIEHALPESHRQRLRG 123

Query: 121 ---------SPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLLIHQQTWYL 167
                          +F  +  AI  +R++ +  +          + P  L    + W L
Sbjct: 124 VPLFAAFLDDTVRPEAFGPVRNAIASKRKLRVRYQSLADDTTERVIRPLALTCFGRVWLL 183

Query: 168 VAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198
            A          F  D +  +  L E+F     
Sbjct: 184 SAWCELRNDFRHFRTDRVERLTVLAESFEDEPG 216


>UniRef50_C8X624 Helix-turn-helix type 11 domain protein n=1 Tax=Nakamurella
           multipartita DSM 44233 RepID=C8X624_NAKMY
          Length = 335

 Score =  109 bits (273), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 66/226 (29%), Gaps = 42/226 (18%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLD---LEYQSGYCRLR 67
           + RL  ++  + +    +  +LA   GVS RT+R+D             +    GY  L 
Sbjct: 5   SARLLSLLGLMQSRRRWAGPELAERLGVSDRTVRKDIDRLRSLGYPVDAVRGAGGYYELG 64

Query: 68  TAG-SEMQMVPDVLIFAH---------RSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117
                   ++ +    A           +G+         +L   L    +         
Sbjct: 65  VGASMPPLLLDEDEAVAVAVGLRAASGIAGIEETSVRALAKLDAVLPHHLQRQVAAVHEA 124

Query: 118 PVPSPS-----------GALSFWRLIQAITGRRRVTLIAEGR---------------RCE 151
            V  P             A     L  AI  R  V                         
Sbjct: 125 VVQGPENTGSNVADPVVDAGLLTELSAAIRDRVEVRFDYRADPDSALSAASGAASVVDRR 184

Query: 152 RLAPCRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRR 195
           ++ P RL+  Q+ WYLVA     G  A + +D + L  P    FR 
Sbjct: 185 QVEPYRLVSWQRRWYLVARDARTGSWAPYRVDWLTLKTPGGRHFRP 230


>UniRef50_C4DCR3 Predicted transcriptional regulator, COG2378 n=1 Tax=Stackebrandtia
           nassauensis DSM 44728 RepID=C4DCR3_9ACTO
          Length = 320

 Score =  109 bits (272), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 78/240 (32%), Gaps = 28/240 (11%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG----YCRLRT 68
           R+  ++S L  G + +  +LA     S RTLRRD      +   +E   G    Y  +  
Sbjct: 7   RMLSLLSLLQGGRSWTGIELAERLSTSPRTLRRDIDRLRELGYPVETTRGPGGHYRLVAG 66

Query: 69  AGSEMQMVPDVLIFAHRSGL-----------AGLFPGLDRRLVNALLMCDESPCVIAPAN 117
           +     ++ D    A   GL           A       R++   L            A 
Sbjct: 67  SAMPPLLLEDDEAVAIALGLRVASDGVMADVADTASSALRKVEQVLPKRLRQRVRAMHAA 126

Query: 118 PVPSPSGALSFWR-----LIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168
              +P+            + +A    +R+          R   R+ P R ++  + WYL+
Sbjct: 127 TETTPARWPQVSARLLDIVGEASHRSQRLDFDYRDRGDARTRRRVEPYRQVLVNRRWYLL 186

Query: 169 AE--HEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFV 226
           A     G   +F +D +   Q     F   + L           AL  +  + H ++ F 
Sbjct: 187 AWDLDRGDWRIFRMDRMSDPQVGPGRFEARE-LPAESAASFVENALKRYPPMHHIVVDFH 245


>UniRef50_B8CYA6 Helix-turn-helix type 11 domain protein n=1 Tax=Halothermothrix
           orenii H 168 RepID=B8CYA6_HALOH
          Length = 327

 Score =  109 bits (272), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 85/254 (33%), Gaps = 34/254 (13%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAG-ETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDL- 57
           MT    +      R+  +I+ L +G +    R LA  FGVS RT+ RD +    M++ + 
Sbjct: 1   MTVKRSK----LYRILKMINLLSSGVKRWRARDLAELFGVSPRTIYRDIQYMEQMHIPVI 56

Query: 58  --EYQSGYCRLRTAGSEMQMVPDVLIFAHRSGL----AGLFPGLDR------RLVNALLM 105
             E ++ Y  +     +   +      A           ++P  +       +++N+L  
Sbjct: 57  KDEEKNTYAIMEDFYFKPPRMTREEAMALLLVAHAFEDEVYPYREELNNAVSKIINSLPS 116

Query: 106 CDES-------PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR-----CERL 153
             +          +      V       +   +  +I   + V +             ++
Sbjct: 117 SVKKVLLDLEDRILFHQGAVVDMTKHRDTINIINDSIASNQSVIINYYSLSSDMLRERKV 176

Query: 154 APCRLLIHQQTWYLVAEHEGHIAV--FTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
            P ++ +    +YL+A       V  F +D I  I+   + +   D    + +       
Sbjct: 177 DPYKIFVQDGAYYLIAYCHLRCNVLLFRVDRIRNIKVTSDKYIIPDDFD-VEKYMQNAWG 235

Query: 212 LPHFRFIQHSLLTF 225
           +      +  +L F
Sbjct: 236 VERGDKEERVVLLF 249


>UniRef50_C1YQ17 Predicted transcriptional regulator, COG2378 n=2 Tax=Actinobacteria
           (class) RepID=C1YQ17_NOCDA
          Length = 322

 Score =  109 bits (272), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 70/215 (32%), Gaps = 29/215 (13%)

Query: 12  AVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL----MYLDLEYQSGYCRLR 67
           + R+  ++S L  G       LAA   VS R+LRRD             L    G+ RL 
Sbjct: 5   SARMLRLLSLLQTGRAWPGADLAAALEVSPRSLRRDIDRLRELGYAVESLRGPGGHYRLA 64

Query: 68  TAG-SEMQMVPDVLIFAHRSGLAGLFPGL------------DRRLVNALLMCDESPCVIA 114
                   ++ D  + A   GL  +  GL                +  +L    +    A
Sbjct: 65  AGRAVPPLLLEDDEVVAAALGLRIVAAGLGGVEGVEESAERALARLGRVLPSRLARRAKA 124

Query: 115 PANPVPSPS------GALSFWRLIQAITGRRRVTLIAEGRRCERL----APCRLLIHQQT 164
            A  V                 L +A+     V ++  G     L     P RL++  + 
Sbjct: 125 MAAAVEPEQRVWPGVRTRVLTDLGEAVADGHWVRMLHRGGDGRELRRKADPYRLVLSGRR 184

Query: 165 WYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRND 197
           WYL A          F LD I  + P +  F R +
Sbjct: 185 WYLFAWDRERDDWRTFRLDRITGVTPTRAPFTRRE 219


>UniRef50_Q2YYI6 Probable transcriptional regulator n=1 Tax=Staphylococcus aureus
           RF122 RepID=Q2YYI6_STAAB
          Length = 309

 Score =  109 bits (271), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 60/217 (27%), Gaps = 26/217 (11%)

Query: 23  VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEY----QSGYCRLRTAGSEMQMVP 77
              + +S  +L+    VS RT+ RD        + +        G+  +     +     
Sbjct: 14  NERKRISAHELSELMEVSQRTIYRDIEAINIAGIPVYSIPGVGGGFEIMENFKIDKNTFT 73

Query: 78  DVLIFAHRSGLAGLFPGLDRR------------LVNALLMCDESPC---VIAPANPVPSP 122
           +    +     +     L               +    L   E+      +   +     
Sbjct: 74  ENESASLLISNSNFPEKLKNNDFFNTNLKIKSLIPKDKLNSIETQVEQFQLDSNHWNELR 133

Query: 123 SGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYL--VAEHEGHIA 176
           +      +   AI   + + +        +    + P +L++    WY            
Sbjct: 134 NIDEQLIKFKNAIQNNQVLKIKYINHLGNKTEREVKPYQLILKAGHWYCYVYCYLRDDFR 193

Query: 177 VFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
           +  L+ +  +Q L+  F +   +  L+      + L 
Sbjct: 194 LLKLNRVIHLQELESKFIKKMYIDPLLSTNRIFEKLK 230


>UniRef50_D2AWK7 DeoR family transcriptional regulator n=36 Tax=Actinomycetales
           RepID=D2AWK7_STRRD
          Length = 333

 Score =  109 bits (271), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 57/203 (28%), Gaps = 28/203 (13%)

Query: 23  VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCRLRTAGSEMQMVP 77
                    +LA    VS RT+RRD      +   ++       GY  +  A     ++ 
Sbjct: 23  QTPREWPGSELAERLRVSPRTIRRDIDRLRELGYPVQASMGAVGGYRLVAGAAMPPLLLD 82

Query: 78  DVLIFAHRSGLA---------------GLFPGLDRRLVNALLMC--DESPCVIAPANPVP 120
           D    A   GL                     L++ L + L       +   +   +   
Sbjct: 83  DEEAVAIAVGLRTAAGHPVDGIEEASVRALAKLEQVLPSRLRHRVGALNAATVPMPSGGG 142

Query: 121 SPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLVAE--HEGH 174
                     L  AI  R R+                 P RL+   + WYLVA       
Sbjct: 143 PTVDPEDLTVLAAAIANRERLRFGYRSGEGAESNRLAEPHRLVAAGRRWYLVAYDIDRDD 202

Query: 175 IAVFTLDEIHLIQPLQETFRRND 197
             +F +D I   +P        +
Sbjct: 203 WRIFRVDRIRQPRPTGARITPRE 225


>UniRef50_C6W4A4 Helix-turn-helix type 11 domain protein n=1 Tax=Dyadobacter
           fermentans DSM 18053 RepID=C6W4A4_DYAFD
          Length = 315

 Score =  109 bits (271), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 28/226 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRLR 67
              R++ I+ +L + + +  + LA  F +S+RT+ RD        + +  ++  GY  + 
Sbjct: 3   RFDRITAILIQLQSRKIVKAQDLAERFEISLRTVYRDINSLAEAGVPIIGEAGVGYSIMD 62

Query: 68  TAGSEMQMVPDVLI--FAHRSGLAGLFPGLD--------RRLVNALLMCDESPCVIAPAN 117
                  M        F     L   F  L            + A+L   E   V    N
Sbjct: 63  GYRLPPVMFTKEEARTFITAEKLMEKFTDLSTQSHYQSAMYKIKAVLRSTEKSMVENLEN 122

Query: 118 PVPSPSGALSFWR--------LIQAITGRRRVTLIA-----EGRRCERLAPCRLLIHQQT 164
            +   S   +F +        L+++I+ R+   ++             + P  +      
Sbjct: 123 HIEVRSRPRAFHQPDSNTLDVLLRSISERKIAKILYVALSASEPVERVIEPVGVYHENNY 182

Query: 165 WYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVF 208
           WY +A          F  D I      +  F       +      +
Sbjct: 183 WYTIAFCHLRNDYRNFRSDRILQCDITERPFVHKHGPLKDFMHDSW 228


>UniRef50_A3YDU1 Transcriptional regulator, (DeoR-family protein) n=1
           Tax=Marinomonas sp. MED121 RepID=A3YDU1_9GAMM
          Length = 238

 Score =  108 bits (270), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 24/224 (10%)

Query: 14  RLSLIISRLVAGE-TLSVRKLAAEFGVSVRTLRRDFRERLMYL-DLEYQSG-YCRL-RTA 69
           RL  II  L      +  ++LA +F VSVRT+ RD  E    L  ++ ++G    L    
Sbjct: 8   RLFSIIQILRNARFPVKAQQLADKFEVSVRTIYRDIAELQNQLVPIQGEAGVGYILKPGY 67

Query: 70  GSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNAL--------------LMCDESPCVIAP 115
                M+    + A   G   +    D+ L  +               L        +  
Sbjct: 68  EMPPLMLTANELEAVALGAHWVSQRGDKYLSQSANSLLEKIKDVVPEHLQSVILDTNLVS 127

Query: 116 ANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRC----ERLAPCRLLIHQQTWYLVAEH 171
           AN   +   +++   + +AI  + ++ +  +  +       + P  +        +VA  
Sbjct: 128 ANYAQAVEDSINMDDVREAIRQQSKLFIAYKDVKENISHRIIWPIMVAYFDSVRLVVAWC 187

Query: 172 --EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
                   F  D I+ ++ L E++ +     +L         LP
Sbjct: 188 ESRQDFRHFRTDRINKVEVLDESYPKPRQTLKLEWQKKQNITLP 231


>UniRef50_A0R9T5 Transcriptional regulator, DeoR family n=74 Tax=Bacillaceae
           RepID=A0R9T5_BACAH
          Length = 322

 Score =  108 bits (270), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 86/251 (34%), Gaps = 31/251 (12%)

Query: 1   MTQAERR-HDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MY 54
           M + ++  H   A RL  I+    A +T + +++A EF +SVRT+ R   +       +Y
Sbjct: 1   MLKRKKVIHLSKAKRLLDILIFASAKKTFTAQEIADEFNISVRTVHRYIVDLSDMGLPIY 60

Query: 55  LDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLD-----------RRLVNAL 103
            +     GY  L        +  +    +       L    D            +L ++L
Sbjct: 61  AEQGRNGGYKVLTNRVIPPILFTEEEAVSIFFAFQSLSYYRDLPFNTEINSVIHKLYSSL 120

Query: 104 LMCDESPCVIAPA-----NPVPSPSGALSFWRLIQAITGRRRVTLIAEGR---RCERLAP 155
               ++      +     NP  +         L  AI  +  +    E +   + + + P
Sbjct: 121 QHDAKTKVEKIRSYIAFWNPKRTIDTPHLNEVLTAAIENKN-LHFQYESKSGIKTKHVHP 179

Query: 156 CRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALP 213
             +  H   WYL +       + ++ +D I  I   +E     D+   L E       + 
Sbjct: 180 IGVYAHDGLWYLPSYDFSRKKVLLYRVDRILSILSTEEN---EDTFMNLEEWFASNSNVI 236

Query: 214 HFRFIQHSLLT 224
           H     H LLT
Sbjct: 237 HSPTQLHVLLT 247


>UniRef50_Q222Z2 Helix-turn-helix, type 11 n=3 Tax=Proteobacteria RepID=Q222Z2_RHOFD
          Length = 231

 Score =  108 bits (269), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 11  LAVRLSLIISRLVAGE-TLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSGYCRL-- 66
            A RL  + + L +    ++   +AA   VSVRT+ RD +        ++ ++G   L  
Sbjct: 3   KAERLFHLYALLRSRRTAMTAEAIAAVLEVSVRTVYRDVQALSQSGAPIDGEAGVGYLLR 62

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA- 125
                   M     + A   G   +    D  L  +    ++    I   +   +     
Sbjct: 63  PGFDLPPLMFTPEELLALMVGARMVQAFTDPDLARSARQSEQKIRSILTDSLKLNAERQP 122

Query: 126 -------------LSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLV 168
                             L  A  GR++V  +     + R    L P  ++     W L+
Sbjct: 123 YRIPILDSDDGLREVHRTLRLACEGRKKVRAVYCDEQQQRTERVLWPLGIIGWTGRWTLL 182

Query: 169 AEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200
           A  E       F  D    +  L E F     + 
Sbjct: 183 AWCETRSDYRNFRFDRFDAVACLDERFPPRPDVN 216


>UniRef50_Q1JX03 Helix-turn-helix, type 11 n=1 Tax=Desulfuromonas acetoxidans DSM
           684 RepID=Q1JX03_DESAC
          Length = 319

 Score =  107 bits (268), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 66/215 (30%), Gaps = 28/215 (13%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER--LMYLDLEY---QSGYCR 65
              R      ++  G   +  KLA +F +S RT +RD       +   LEY   + GY  
Sbjct: 4   RIERFFWFDHQIRQGNYPNAPKLARQFEISERTAKRDIDALTNQIGAPLEYNATRRGYRY 63

Query: 66  LR--------TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALL--------MCDES 109
                         +  M   +L     SG A    G    L   +L          +  
Sbjct: 64  SDASYSLTWTRFSHQEIMAMLILRRMLDSGGASPLSGELNALCEKMLTNLEQCGIDREHL 123

Query: 110 PCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRR-----CERLAPCRLLIHQQT 164
               +       P     F +L +A+  RR+V    +           + P  L  +  +
Sbjct: 124 DHCFSANWSHYIPVDETIFQQLGEAVLTRRKVYFSYQNPTRPQASSRMVHPYHLQHYSGS 183

Query: 165 WYLVAEHE--GHIAVFTLDEIHLIQPLQETFRRND 197
           WYL++  E       F L  I  +      F   D
Sbjct: 184 WYLISWCEEQQDWRTFQLSRISQMHLTDTPFDYRD 218


>UniRef50_C1SHC7 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus
           DSM 12809 RepID=C1SHC7_9BACT
          Length = 306

 Score =  107 bits (268), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 78/223 (34%), Gaps = 15/223 (6%)

Query: 16  SLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDL----EYQSGYCRLRTAGS 71
             +I  L     ++   +A E GVS+RT +R   +      +    E    Y        
Sbjct: 8   LKLIKLLNENRYVTSTMVADELGVSLRTAQRYLSDMSYLPGVCYSDEKHQWYLTEHYGLH 67

Query: 72  EMQMVPDVLIFAHRSG------LAGLFPGLDRRLVNALLMCDESPCVI--APANPVPSPS 123
           E  +  D L             L   + G+  +L   ++       +I    A+ V    
Sbjct: 68  ESYLKQDELAVLSGLFDYAENILQDEYSGMLTKLRKKIISASNRQNIIQFMKADSVGFDK 127

Query: 124 GALSFWRLIQAITGRRRVTLIA-EGRRCERLAPCRLLIHQQTWYLVAEHEGH-IAVFTLD 181
            A +F  L   I  ++ +T    +  +   + P RL+ +   WYL A ++   +  F LD
Sbjct: 128 VAENFTLLENYILKKQVITFDYLKNDKTYEVKPYRLIYNDGFWYLAALNKQDSLRKFGLD 187

Query: 182 EIHLIQPLQETFRRNDS-LCRLVEDPVFIQALPHFRFIQHSLL 223
            +  I+   ETF      +   +     I   PH +     LL
Sbjct: 188 LMENIKSSNETFEIATDVIDAEISQANNIFFDPHKKIKVKCLL 230


>UniRef50_C0YNW3 Transcriptional regulator, DeoR family protein n=1
           Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YNW3_9FLAO
          Length = 317

 Score =  107 bits (268), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 71/216 (32%), Gaps = 27/216 (12%)

Query: 5   ERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ--S 61
              + +   R++ I+++L +   +  + LA +F VS+RT+ RD +      + +  +  +
Sbjct: 2   NDHYLKKLDRVTAILTQLQSKPVVRAQDLAEKFDVSIRTIYRDVKTLENAGIPIVGEAGN 61

Query: 62  GYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA------------------L 103
           GY  +        M     + +  +    +     + L N                   L
Sbjct: 62  GYSLMEGYKLPPIMFTKEEVLSFITAEKLMQKFSHQSLGNHYQAAMEKVRSVLKYSDKNL 121

Query: 104 LMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAE----GRRCERLAPCRLL 159
           +   E    +   +     S       ++++I  + ++ +  +          +    + 
Sbjct: 122 IKNIEKQIDVFSFHTDSGDSLKNVIPIILESIAEKTQLIIKYQTVDGRVNHRTIETVGMF 181

Query: 160 IHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETF 193
                WY++A          F +D I  I   Q  F
Sbjct: 182 FEFNFWYIMAFCTLRKDFRQFRIDRILEISKTQNPF 217


>UniRef50_B2PXP5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2PXP5_PROST
          Length = 146

 Score =  107 bits (266), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ 60
           M    R++DR+A+RLS +I+RLVAGE L +  LA EF V  RTL+RD RERL YL +EY+
Sbjct: 1   MLPTNRKYDRMAMRLSALITRLVAGENLVLTDLACEFNVPARTLQRDLRERLAYLGVEYR 60

Query: 61  SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPG-LDRRLVNALLMCDESPCVIAPANPV 119
               RL     +     DVL F  + G+  LFPG   R L   L     +P +I      
Sbjct: 61  KRVYRLPLNTLKAYRDKDVLTFVKQMGMTRLFPGLDSRLLNLLLSQRQHAPYLIWHHAHR 120

Query: 120 PSPSGALSFWRLIQAITGRRRVTLIA 145
            S   A  F++L+ AI G + +TL  
Sbjct: 121 TSAEHAEHFYQLVYAIIGYQHITLPY 146


>UniRef50_Q6ZEN3 Sll5097 protein n=5 Tax=Chroococcales RepID=Q6ZEN3_SYNY3
          Length = 334

 Score =  106 bits (264), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 70/262 (26%), Gaps = 32/262 (12%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM--YLDLE 58
           MT       R   RL  I   + +    + + +A +  V+ RT+R DF          ++
Sbjct: 1   MTAQNVLSPRQLERLLAIDEYIRSPIRYTAKVIAEKLSVAERTIRLDFAFLRDRFNAPIQ 60

Query: 59  ---YQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAP 115
               +  Y    T       +    +FA   G   L           L    +      P
Sbjct: 61  FNQSKGYYYSDNTWRLPTIPLTQGELFALTLGAKALEAYSGTAYEAELKSSIKQLATRLP 120

Query: 116 ANPVPSPS------------------GALSFWRLIQAITGRRRVTLIAE-----GRRCER 152
                +                        +  L +A    R++ +              
Sbjct: 121 EKVWVNLEKLVDEKINFRPGAELLNLDPDIYQILHEAWKSSRQLWIRYYTAGRNEESERI 180

Query: 153 LAPCRL-LIHQQTWYLVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFI 209
           + P  L +      YLVA          F LD I   + L E F  N +     +     
Sbjct: 181 VDPYYLDIYRGSNPYLVAFCHNRQAFREFRLDRIREYRILDEYFEPNPNFDWK-KYSKNA 239

Query: 210 QALPHFRFIQHSLLTFVPADSP 231
             +     +   ++ F    +P
Sbjct: 240 FQIEKGNCLHEVVIDFTCKVAP 261


>UniRef50_D2PY48 Helix-turn-helix type 11 domain protein n=6 Tax=Actinomycetales
           RepID=D2PY48_9ACTO
          Length = 331

 Score =  105 bits (263), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 66/238 (27%), Gaps = 31/238 (13%)

Query: 23  VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG----YCRLRTAGSEMQMVP 77
                 +  +LA+   VS RT+R D      +   ++   G    Y     A     ++ 
Sbjct: 20  QTRPAWTGAELASRLNVSTRTIRNDVDRLRELGYPVDAVRGPAGHYQLGVGAKLPPLLLD 79

Query: 78  DVLIF--------------------AHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPAN 117
           D                           + L  + P   RR VNA+            +N
Sbjct: 80  DEEAVAVAVGLRTGAGVSGMEESSGRALAKLEQVLPHRLRRQVNAIHTTLSKGPDNTGSN 139

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCE-----RLAPCRLLIHQQTWYLVAEHE 172
                        +  AI     +         +      + P RL+  Q+ WYLVA  E
Sbjct: 140 VQDPEVDPAVVTTIAAAIRDEHYLRFEYAVPGTDPGFPILVEPYRLVSWQRYWYLVARDE 199

Query: 173 -GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPAD 229
            G    + +D + L       +R          D V          +   +  F  A+
Sbjct: 200 SGQWRTYRVDWMDLRMATGRRYRPRPMPDEDYTDFVLRDVATTGWKVHARITVFASAE 257


>UniRef50_C2ZF99 Putative uncharacterized protein n=4 Tax=Bacillus cereus
           RepID=C2ZF99_BACCE
          Length = 312

 Score =  105 bits (263), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 65/206 (31%), Gaps = 25/206 (12%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYC 64
           +   RL+ ++  +   +T +++ L  EF +S RT  RD          ++ +     GY 
Sbjct: 2   KKVERLNQMLRFINQKQTFTLKDLMDEFQISKRTALRDIASLEEMGVPLFAEYGRYGGYR 61

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGLAGL-----------FPGLDRRLVNALLMCDESPCV- 112
            +++         +  +FA    +  L              ++++ ++++          
Sbjct: 62  LIKSMTLPPISFTNHEVFALYFAMQALSSFVSIPFQISLRSINKKFLDSVSSKQREQIEN 121

Query: 113 ---IAPANPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWY 166
                                ++ A    R +T+     +     R+ P  +   +  WY
Sbjct: 122 LQKRVSFFHSEQAHECGYLEEILLAAVQNRALTINYVTPKQTTMRRIQPISIYAMKGYWY 181

Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQ 190
             A         VF  D I   + + 
Sbjct: 182 CQAYDLDKSAYRVFRCDCIRSSEIVD 207


>UniRef50_A6D7H7 Transcriptional regulator, putative n=1 Tax=Vibrio shilonii AK1
           RepID=A6D7H7_9VIBR
          Length = 255

 Score =  105 bits (263), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 34  AAEFGVSVRTLRRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFP 93
             E+GVS +TLRRDF +RL+   +   +   +L    +   +          SGL+ L P
Sbjct: 1   MEEYGVSEKTLRRDFNQRLINTPIMKTAHGYQLENQLNSSYVTTK--RILDDSGLSSLLP 58

Query: 94  GLDRRLVNALLMCDESPCVIAPANPVPSPSGALS--FWRLIQAITGRRRVTLIAEGRRCE 151
                          SP  I   NP    +      F ++  AIT R  + L  +GR   
Sbjct: 59  PKH--------NISTSPSTILFKNPRIEDTHKFDGVFTQINSAITSRTIIDLTYQGRLIT 110

Query: 152 RLAPCRLLIHQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCR 201
           ++ P RL+  +  WYL     G +  + L ++  I   ++ +  +  +  
Sbjct: 111 QVHPYRLVNDRGIWYLSGVASGQLYSYRLAKVSQIHTAEDKYYPDPKVLE 160


>UniRef50_D0LB20 Helix-turn-helix type 11 domain protein n=5 Tax=Corynebacterineae
           RepID=D0LB20_GORB4
          Length = 324

 Score =  105 bits (263), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 60/202 (29%), Gaps = 27/202 (13%)

Query: 23  VAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCRLRTAGSEMQMVP 77
                 S  +LA    ++ RT+RRD  +       +   +    GY     A     ++ 
Sbjct: 16  QMRREWSGNELADRLNITTRTVRRDVDKLRELGYPVDATVGVGGGYRLGAGAEMPPLLLD 75

Query: 78  DVLIFAHRSGLAGL-------FPGLDRRLVNALLM------CDESPCVIAPANPVPSPSG 124
           D  + A   GL  +               +  L              +   A P   P+ 
Sbjct: 76  DQEVLAVALGLDAVTTGAVADMAEASAGALTKLRQVMPSRLRHRLDALRVEAVPHQQPAS 135

Query: 125 ALSFWRLIQ---AITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH--EGHI 175
           A+S   L +   A     R+               + P RL+ +   WYLVA        
Sbjct: 136 AVSADVLTEIATACHRTERLRFDYRRPNRDESRREVEPYRLVRNGYRWYLVAWDLTREDW 195

Query: 176 AVFTLDEIHLIQPLQETFRRND 197
             F +D +    P    F  ++
Sbjct: 196 RSFRVDRMTPKTPTGPRFTPHE 217


>UniRef50_B3QT91 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium
           ATCC 35110 RepID=B3QT91_CHLT3
          Length = 327

 Score =  105 bits (262), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 71/259 (27%), Gaps = 32/259 (12%)

Query: 1   MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYL----- 55
           M  +  R      R+  I  +L A +  + R LA EF VS ++++RD     + L     
Sbjct: 1   MKHSVSRAST--YRMKRIDEKLRAKKYPNCRTLADEFEVSEKSVQRDLEHMRVLLGAPIA 58

Query: 56  -DLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIA 114
            D   +  Y            +      A       L    +      L           
Sbjct: 59  YDRSKRGFYYTEPNYFLPSVYLKHGEAKAFGVLQRILKQYEETPYYKELESAMHRVFENL 118

Query: 115 PA----------------NPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERL 153
           P                  P   P     F ++ +A   R  + +              +
Sbjct: 119 PGKSDPFSEEEIYSFEQPPPPSRPLDREHFQQIDRAANRREVIDITYYAASRNETSRRGV 178

Query: 154 APCRLLIHQQTWYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQA 211
            P  L   Q TWYL+A       +  F L+ I  I+     F   +              
Sbjct: 179 HPYHLHFAQGTWYLIAHCELRRELRFFALNRISEIRETSRPFAIPEDFSLNNYLAKTFD- 237

Query: 212 LPHFRFIQHSLLTFVPADS 230
           + H   +    L F P  +
Sbjct: 238 MTHDETLYDIELRFSPYQA 256


>UniRef50_A6WF08 Helix-turn-helix type 11 domain protein n=1 Tax=Kineococcus
           radiotolerans SRS30216 RepID=A6WF08_KINRD
          Length = 321

 Score =  105 bits (262), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 24/209 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDL----EYQSGYCR 65
            A RL  ++  L A   ++   L     VS RT+ RD        + +        G   
Sbjct: 2   RADRLLSLLFLLQAHGRMTAPDLGRRLEVSTRTVLRDVEALSAAGVPVWTERGRGGGISL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLF-------PGLDRRLVNALLMCDESPC------- 111
           +    +++         A  SG AG+            R+L+ A      +P        
Sbjct: 62  MPNWRTDVSGFTAGEARALFSGAAGVADPQRPAWESAVRKLLAATPAEQRAPFQRAAERI 121

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWY 166
           ++ PA      +       L +A+   RRV L              L P  L+     WY
Sbjct: 122 LVEPAGWRSREANPPHLAALQEAVFSARRVRLRYRSAGATRTSTRTLDPIGLVAKGGVWY 181

Query: 167 LVAEHEGHIAVFTLDEIHLIQPLQETFRR 195
           LVA       +F ++ +  +  L +    
Sbjct: 182 LVAATRDGDRLFRVERVVGLDVLDDPVPP 210


>UniRef50_A2U2S8 Transcriptional regulator n=1 Tax=Polaribacter sp. MED152
           RepID=A2U2S8_9FLAO
          Length = 227

 Score =  105 bits (261), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 71/214 (33%), Gaps = 25/214 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG------- 62
              R++ I+ +L +   ++ +++A  F +S+RT+ RD +      + +  ++G       
Sbjct: 3   RLTRVTAILIQLQSKRIVTAKEIAQRFEISLRTVYRDIKTLQDAGIPIGSENGVGYFIVD 62

Query: 63  YCRLRTAGSEMQMVPDVLIFAHRSG----------LAGLFPGLDRRLVNALLMCDESPCV 112
             R+       +    ++I                L  +   +   L N      E    
Sbjct: 63  GYRIPPIALTEEEANALIIVEELMKKQGDKSIDKNLNSIIIKVKATLKNFQKDNIELLSS 122

Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG-----RRCERLAPCRLLIHQQTWYL 167
              +    + + +     + ++I  ++ + +              + P  +     +W +
Sbjct: 123 RTFSLNNQNYTESSWLSEIQKSILRKQILKINYHSISKEQTTIRDIEPLSVYFTNTSWVV 182

Query: 168 VAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSL 199
           +A       +  F LD+I  +      F  + S 
Sbjct: 183 IAFCHLRNGLREFRLDKIIKLTNTLMPFSIDISF 216


>UniRef50_C8QWX3 Transcriptional regulator-like protein n=1 Tax=Desulfurivibrio
           alkaliphilus AHT2 RepID=C8QWX3_9DELT
          Length = 334

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 78/242 (32%), Gaps = 31/242 (12%)

Query: 20  SRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLD-----LEYQSGY-CRLRTAGSEM 73
            ++      +   LAAEFG+S RT  R      +  D     +  + GY           
Sbjct: 15  QQIRRERFPNAPALAAEFGISERTAGRAIEAMRVEFDAPLHYVHARRGYTYLDDQFQLPP 74

Query: 74  QMVPDVLIFAHRSG-----------LAGLFPGLDRRLVNAL----LMCDESPCVIAPANP 118
             +    IFA               ++     L+R+L+  +    L  ++   + +   P
Sbjct: 75  FWLSQEEIFAVLLARNLLSCCADGLISQAIASLNRKLLQQIADHGLAAEKFDQLFSATWP 134

Query: 119 VPSPSGALSFWRLIQAITGRRRVTLIA-------EGRRCERLAPCRLLIHQQTWYLVAEH 171
             +P+ A  F    +A+  +R                    + P  L  +Q  W L+A  
Sbjct: 135 GYAPAPAEVFRPATKALLEQRLFAFDYSSPLDQNGNYHSRLVEPHHLQHYQGNWVLLARC 194

Query: 172 EGH--IAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPAD 229
                   F L  +   Q   ETF  +      +        +   R  + +++ F PA 
Sbjct: 195 RKRCDWRKFVLSRMQNPQISTETFTPHPRREW-LPHLEGAYGIFQGRSPETAIIRFTPAR 253

Query: 230 SP 231
           +P
Sbjct: 254 AP 255


>UniRef50_B7HA30 Hypothetical DNA-binding protein n=2 Tax=Bacillus
           RepID=B7HA30_BACC4
          Length = 314

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 61/200 (30%), Gaps = 25/200 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-----MYLDLEYQSGYCR 65
              R+  I+  L    +++ ++LA   GVS RT+ RD +E       +Y +     G+  
Sbjct: 3   KTKRIIRIMLALNNNNSITAKELAKSEGVSERTILRDIQELSEIYFPVYSERGRNGGFST 62

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGL-------FPGLDRRLVNALLMCDESPCVIAPANP 118
           L+          +  I A    +  +       F      ++N L          A  N 
Sbjct: 63  LKNKMIPPIWFSEDEIIALFFAIDAMQYVGATPFSTSYNVILNKLFNMIPQETSDAIENT 122

Query: 119 VPSP--------SGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYL 167
                               L  A    + V ++    E      +    L ++   WY 
Sbjct: 123 RDKILMWQPNIKVDKRVLRNLYDASVEEKTVNILYETTEDEIYREIELMGLYVYNGYWYC 182

Query: 168 VAEHEGH--IAVFTLDEIHL 185
            A       I +F +D I  
Sbjct: 183 PAYCRMRRGIRLFRVDRIKK 202


>UniRef50_A8W027 Regulatory protein GntR, HTH n=1 Tax=Bacillus selenitireducens
           MLS10 RepID=A8W027_9BACI
          Length = 328

 Score =  104 bits (260), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 64/225 (28%), Gaps = 28/225 (12%)

Query: 13  VRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM---YLDLEYQSGYCRLRTA 69
            RL  I+  L   +T++  +LA     + RT+ RD          +  + + GY  L   
Sbjct: 10  ERLFYIMQFLSNHDTVNAGELADHCQATKRTIYRDIHFLQSQGHEIQTQGREGYKLLIPN 69

Query: 70  G--SEMQMVPDVLIFAHRSGLAGLFPGLDR-----------RLVNALLMCDESPCV---I 113
                     + L       L+      D            +++        +P     I
Sbjct: 70  MQVRSKLTEDEWLSLTLYPLLSSGIASSDHPYHRHYKTGLEKVMRLASGGAPNPAFAERI 129

Query: 114 APANPVPSPSGALSFWRLIQAITGRRRVTLIAE-----GRRCERLAPCRLLIHQQTWYLV 168
                      A     +I AI+  R + +             RL P  L+  +   YLV
Sbjct: 130 RLHARTQDTFQAKVMPAIITAISDNRCIDVRYYAMHRSEWSERRLEPYYLVPREGHLYLV 189

Query: 169 AEH--EGHIAVFTLDEIHLIQPLQETFRRNDSL--CRLVEDPVFI 209
           A       I VF L+    +      F           ++    I
Sbjct: 190 AFCRLRNDIRVFRLNRFEDVHVTDAPFTIPQDFSIDAFLKKRWSI 234


>UniRef50_B2SX79 Helix-turn-helix type 11 domain protein n=41 Tax=Burkholderia
           RepID=B2SX79_BURPP
          Length = 246

 Score =  104 bits (260), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 72/205 (35%), Gaps = 23/205 (11%)

Query: 10  RLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCRL 66
           R A RL  I   L      + ++LA    +S+RT+ RD R+  L  + +E ++  GY   
Sbjct: 21  RRADRLFQIAELLRGRRLTTAQQLADWLHISLRTVYRDVRDLQLSGVPIEGEAGIGYRLS 80

Query: 67  RTAGSEMQMVPDVLIFAHRSGLAGLFP-----------GLDRRLVNALLMCDES---PCV 112
           RTA           + A  +G   L             G   ++ +A+     +      
Sbjct: 81  RTASLPPLTFTADELAALAAGARMLESWGGAGFAGGARGALAKIASAMPADKRATLERLA 140

Query: 113 IAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEG----RRCERLAPCRLLIHQQTWYLV 168
           +   +       +     L +AI  R+ V              R+ P  L      W L 
Sbjct: 141 VFAPSFHIKGDFSAQLDALHRAIDTRQVVRFAYVDVNGAASERRVWPLALAYWGARWTLG 200

Query: 169 AEH--EGHIAVFTLDEIHLIQPLQE 191
           A     G    F L++I  +Q L++
Sbjct: 201 AWCELRGDFRNFGLEKIQNLQVLEQ 225


>UniRef50_Q3JYW1 Putative uncharacterized protein n=2 Tax=Streptococcus agalactiae
           RepID=Q3JYW1_STRA1
          Length = 316

 Score =  104 bits (259), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 72/238 (30%), Gaps = 28/238 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65
            + RL  I   +   +  +  +LA +F VS RT++RD  E  +     Y ++    GY  
Sbjct: 3   KSSRLIDIWLYINNHKKFTTTELATKFNVSTRTIQRDIDELSLLGVPFYSEVGRNGGYTM 62

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA 125
           L           +  I +       +    D      +          +  + +   S  
Sbjct: 63  LHQEVLPPISFSEDEIISIILTYKSMIQYKDFPYQFEIESVIAKLLSNSSTSLLERLSQV 122

Query: 126 LSFWRLI---------------QAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYL 167
              + L                 A    + V ++    E +  + L P  +      WY 
Sbjct: 123 EKCFYLKIPVRNEKTPYLKEVFNASIKNKCVEVMYDSLENKNKKLLFPIGIYSDNGYWYF 182

Query: 168 VAEHE--GHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLL 223
            A       +  + +D I  +    +T + + +  RL  +  F   +      +  + 
Sbjct: 183 CAIDNHLKEVRTYRVDRIKSL-VTNDTIQCDKN--RLTIEDAFANQVQSNEGNKQLVR 237


>UniRef50_A9WUI5 Transcriptional regulator n=1 Tax=Renibacterium salmoninarum ATCC
           33209 RepID=A9WUI5_RENSM
          Length = 313

 Score =  104 bits (259), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 73/233 (31%), Gaps = 39/233 (16%)

Query: 18  IISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQ----SGYCRLRTAGSE 72
           ++S L          LA +  VS+RTLRRD      +   +E +     GY     A   
Sbjct: 1   MLSLLQHHRFWPGNDLAEKLEVSLRTLRRDVERLRELGYPVEARRGTDGGYQLAAGASLP 60

Query: 73  MQMVPDVLIFAHRSGL----AGLFPGLDRRLVNALLMCDESPCVIAPANPV--------- 119
             +V D    A   GL     G   G++   ++AL    +                    
Sbjct: 61  PLVVDDEEAVALTIGLRLAAQGAINGIEEASISALAKVIQVMPARLRRRVEALQLATVPS 120

Query: 120 ----PSPSGALSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAEH 171
                    A     + QA     R+          +    + P RL+   Q WYLVA  
Sbjct: 121 GSAPGPVVDATVLTTIAQACRDEERLDFSYTAHNGEQTERHVEPRRLVAVGQRWYLVAYD 180

Query: 172 --EGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSL 222
                   F LD +   +   E FR              I AL    F+Q+SL
Sbjct: 181 LTRHDWLSFRLDRLREPKNTAERFRSRK-----------IPALNAAEFVQNSL 222


>UniRef50_Q1IHV4 Transcriptional regulator, DeoR family n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IHV4_ACIBL
          Length = 314

 Score =  104 bits (259), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 65/215 (30%), Gaps = 25/215 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65
            A RL  ++  L A   ++ R LA    VS RT+ RD           Y     Q G+  
Sbjct: 2   RADRLLSMLLLLQAHGRMTGRDLAERLEVSERTVHRDMESLSASGVPVYAVRGAQGGWQL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSG---------LAGLFPGLDRRLVNALLMCDESPCVIAPA 116
                +++  + +  +               LA        +L+ AL             
Sbjct: 62  EENWRTQVPGLDEAELRGLMMAQPRVVGDAKLASAAQRALEKLMAALPASLREQAASIRE 121

Query: 117 NPVPSPSGALSFWR-------LIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTW 165
                  G             +  A+   R++T++       R    + P  ++     W
Sbjct: 122 RLYVDTGGWRPHLENLAMLPLVQDAVARDRKLTMVYCKPNGERSERTVDPLGVVAKGSAW 181

Query: 166 YLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           YLVA     +  F +  I    PL +  +R     
Sbjct: 182 YLVANTSAGLRTFRVSRIEQATPLVKASKRPRDFN 216


>UniRef50_C8XGJ6 Helix-turn-helix type 11 domain protein n=1 Tax=Nakamurella
           multipartita DSM 44233 RepID=C8XGJ6_NAKMY
          Length = 333

 Score =  104 bits (259), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 63/216 (29%), Gaps = 31/216 (14%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSGYCRLRT---- 68
           R   ++  L +    +  +LA  F V  RT+RR         + +E + G          
Sbjct: 6   RTLEVLELLQSAGVRTATELAERFDVDERTIRRTVDRLRDLGIPIEARPGRYGGYRIAAG 65

Query: 69  AGSEMQMVPDVLIFAHRSGLAGL------------------FPGLDRRL--VNALLMCDE 108
                 M+ +    A  +GL  +                     + R L    A      
Sbjct: 66  WRMPPLMLDENETVAVLAGLLAVPGSGTVPTGHTATATATAIAKIRRSLPARLAARADAL 125

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQT 164
               +  +      +          A+  RR +TL             L P  L+ H+  
Sbjct: 126 LAAAVVGSPDAAPATDPEILLTAADAVRMRRPLTLDYRSGEDVLTRRTLQPHDLVAHRGR 185

Query: 165 WYLVAEH--EGHIAVFTLDEIHLIQPLQETFRRNDS 198
           WYLV           F LD +  ++PL  TF     
Sbjct: 186 WYLVGLDSSSRQRRTFRLDRVRALRPLSGTFPAPAE 221


>UniRef50_UPI000051035F putative DeoR family transcriptional regulator n=1
           Tax=Brevibacterium linens BL2 RepID=UPI000051035F
          Length = 314

 Score =  104 bits (259), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 18/208 (8%)

Query: 11  LAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQ----SGYC 64
            A RL   I  L A    ++   LA    V+ RT+ RD  +   M + +  +     G  
Sbjct: 4   KAARLVSEIVILSARSVPITAANLAERLEVTERTVYRDLGDLSRMGVPVVTEAGPGGGIS 63

Query: 65  RLRTAGSEMQMVPDVL--------IFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPA 116
            L T  S +  +              A   G A        ++++       S  ++   
Sbjct: 64  LLGTWTSPLSGMTRDELDSVLIGGAAAADLGFARELATAREKILSETESVFSSNVLVDGP 123

Query: 117 NPVPSPSGALSFWRLIQAITGRRRVTLIA---EGRRCERLAPCRLLIHQQTWYLVAE-HE 172
           +   +     +   ++ A+   R +        G R     P  L++    WYL+A+   
Sbjct: 124 DWFMTHERPEALSVIVTALRSHRGLQFRYAARTGSRLRTAIPLGLVVKAGRWYLIAQPPG 183

Query: 173 GHIAVFTLDEIHLIQPLQETFRRNDSLC 200
           G    + +  +  I        R     
Sbjct: 184 GRPRTYRVSRMTAIALRYVAVSRPVEFH 211


>UniRef50_A7GU32 Helix-turn-helix type 11 domain protein n=2 Tax=Bacillus cereus
           group RepID=A7GU32_BACCN
          Length = 303

 Score =  104 bits (259), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 28/223 (12%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-YLDL----EYQSGYCR 65
              R+  I+  L+  + +S  +LA  F VS RT+ RD        + +        G+  
Sbjct: 2   KTERMLSILIYLLQKDIISAEELANTFEVSKRTIYRDIDALSAIGIPIISYLGKNGGFTL 61

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLA-----------GLFPGLDRRLVNALLMCDESPCVIA 114
           +     +     +        GL             +       L         +  V  
Sbjct: 62  IDNYRLDKFTFSEEEKRFLLEGLTLKSELFDDEQLSILQKKIEVLKETKRDHTSNMTVSF 121

Query: 115 PANPVPSPSG--ALSFWRLIQAITGRRRVTLIAEGRR----CERLAPCRLLIHQQTWYLV 168
                 +          +++  I   +++ +    +        + P +L     +WYL 
Sbjct: 122 STLHRETIEEETKQKVKKVLVMIEKEQKLQISYVSQTGHLSKRIIQPLKLNFMNGSWYLE 181

Query: 169 AEH--EGHIAVFTLDEIHLIQPLQET----FRRNDSLCRLVED 205
           A       + VF L  I  +  + +     + R     +  ++
Sbjct: 182 AVCVLRKALRVFKLTRIRRMDIIDDNTEIVYDRKPEFIKERKE 224


>UniRef50_D0MJ72 Helix-turn-helix type 11 domain protein n=1 Tax=Rhodothermus
           marinus DSM 4252 RepID=D0MJ72_RHOM4
          Length = 347

 Score =  104 bits (259), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 64/216 (29%), Gaps = 29/216 (13%)

Query: 14  RLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDL---EYQSGYCRLRTA 69
           RL  ++  L +G  L+  + A  F VS RT+  D      + + +     +  Y      
Sbjct: 18  RLQRLLEWLRSGRPLTTTRAARHFEVSRRTIASDIEYLRRLGVPVAYDRRRQTYYLEEPF 77

Query: 70  G--SEMQMVPDVLIFAHRSG-----------LAGLFPGLDRRLVNALLMCDESPC----- 111
                +  +    + A                A L      RL   L             
Sbjct: 78  TENLPLIALDRAELAAFLVARLALEAFGDTPDAALLEAAVERLAAHLPEPIHVDPDTLTR 137

Query: 112 VIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQTWY 166
            +         +       L +A   +R V L              + P  ++ HQ  WY
Sbjct: 138 TLRFEMGPRPRTPLRYLDELRRAAAEQRVVHLHYYANYADALTERDVEPYAIVAHQSRWY 197

Query: 167 LVAEHEGH--IAVFTLDEIHLIQPLQETFRRNDSLC 200
           LVA       +  F +D I  ++  +ETF R     
Sbjct: 198 LVAYCRLRQAMRDFRIDRIQHLKLREETFARRPDFD 233


>UniRef50_D1BRS2 Helix-turn-helix type 11 domain protein n=2 Tax=Micrococcineae
           RepID=D1BRS2_XYLCX
          Length = 320

 Score =  104 bits (258), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 73/241 (30%), Gaps = 32/241 (13%)

Query: 23  VAGETLSVRKLAAEFGVSVRTLRRDFRERL-MYLDLEYQSG----YCRLRTAGSEMQMVP 77
            +    S ++LA   GV+ RT+R D      +   +    G    Y     A     ++ 
Sbjct: 16  QSRADWSGQELAQRLGVTDRTVRNDVARLRELGYPVHTTRGPGGRYRLGAGAVLPPLLLD 75

Query: 78  DVLIFAHRSGLA--------------------GLFPGLDRRLVNALLMCDESPCVIAPAN 117
           D    A   GL                      + P   RR + AL     +  V   +N
Sbjct: 76  DEEAVAIAVGLRATTGMKAFEESGGRALTKLEQVMPQRIRRRIEALRSATSAGPVNTDSN 135

Query: 118 PVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEH--EGHI 175
                        +  AI  RR +    E R    + P  L++ Q+ WYLV      G  
Sbjct: 136 VEDPVVEPELLTEISAAIRDRRTLRCDYEQRTV-EVEPYHLVVWQRRWYLVCRDVASGRW 194

Query: 176 AVFTLDEIHLIQPLQETFR---RNDSLCRLVEDPVFIQALP-HFRFIQHSLLTFVPADSP 231
               +D I L  P    F      + +   V   V       H R +  +    V A   
Sbjct: 195 EPLRVDWIRLRTPGGRRFSPAPPPEDVTEFVVREVAGAGWAVHARIVVDAPPDEVAARIN 254

Query: 232 P 232
           P
Sbjct: 255 P 255


>UniRef50_B2A7V3 Helix-turn-helix type 11 domain protein n=1 Tax=Natranaerobius
           thermophilus JW/NM-WN-LF RepID=B2A7V3_NATTJ
          Length = 312

 Score =  104 bits (258), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 23/227 (10%)

Query: 6   RRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQSGYC 64
            + DRL  R+  +  ++     ++  +LA EF VSVRT+RRD        L ++   G  
Sbjct: 1   MKLDRLV-RVMSVAEKIRKEPGITYNELAQEFDVSVRTVRRDVSVLEQAGLPVQNYHGLR 59

Query: 65  RLRTAGSEMQMVPDVLIFAHRSGL-------------AGLFPGLDRRLVNALLMCDESPC 111
            +              +      +               L+  L + L   ++   +   
Sbjct: 60  FMSDVELPKVQFEPDEVILLLLMVNFISRYEIDNQIPNSLYEKLKQYLPEKMMDKYQHIQ 119

Query: 112 VIAPANPVPSPSGALSF-WRLIQAITGRRRVTLIAEGRRC-----ERLAPCRLLIHQQTW 165
                +P  +     +   R    I  + RV +  +           + P  +   ++ W
Sbjct: 120 KSVLIHPHDNEQDGRNIVRRFKDIIECKNRVKIYYQSHSSKQENWRMVDPYGVFFKKRAW 179

Query: 166 YLVAEHEG--HIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQ 210
           Y+V        I +F  + I  I+ L + +   +            +
Sbjct: 180 YMVGYCHRHLDIRIFKCNRIKKIKSLPDMYDIPNDFDLEEFLSDSFE 226


>UniRef50_A0NPP9 Transcriptional regulator, (DeoR-family) protein n=2
           Tax=Rhodobacteraceae RepID=A0NPP9_9RHOB
          Length = 221

 Score =  104 bits (258), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 57/219 (26%), Gaps = 24/219 (10%)

Query: 11  LAVRLSLIISRLVAGET-LSVRKLAAEFGVSVRTLRRDFRERLM-YLDLEYQSG-YCRLR 67
             +RL  I+  L +  + +    LA   GV+ RT+ RD          +  + G    L 
Sbjct: 2   RTIRLFSILDALRSRRSAVPAAMLADMLGVTERTIYRDMATLKAMGAPIRGEGGVGYILE 61

Query: 68  TAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPSPSGA-- 125
                  M  D            +       ++               +    S +    
Sbjct: 62  RGYFLPPMQFDPNELDVILLGIRMVKARGDAVMRETAERVLGKLGAVLSEGERSLNRPLL 121

Query: 126 -----------LSFWRLIQAITGRRRVTLIA----EGRRCERLAPCRLLIHQQTWYLVAE 170
                       +   L  AI  RR+V L      E        P  L   +  W L A 
Sbjct: 122 AVGKASSALGQDALSPLRDAIRKRRKVQLSYADMQERVSDRLTRPLGLTAFESVWVLTAW 181

Query: 171 H--EGHIAVFTLDEIHLIQPLQETF--RRNDSLCRLVED 205
               G    F LD I   +  +  F           ++ 
Sbjct: 182 CEMRGGFRNFRLDRIRSYKVTETRFPMEPGKEFQDYLKT 220


>UniRef50_B6R9W7 Transcriptional regulator n=1 Tax=Pseudovibrio sp. JE062
           RepID=B6R9W7_9RHOB
          Length = 268

 Score =  104 bits (258), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 68/211 (32%), Gaps = 26/211 (12%)

Query: 10  RLAVRLSLIISRLVA-GETLSVRKLAAEFGVSVRTLRRDFRER-LMYLDLEYQS--GYCR 65
           R A RL  I+  L      ++   +A E  VSVRTL RD        + +  ++  GY  
Sbjct: 22  RRADRLLQIVQLLRRHRGPVTGDVMAEELEVSVRTLYRDIVSLQSTGVPIRGEAGVGYVL 81

Query: 66  LRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVPS---- 121
                    M     + A   GL  +    D +L+            +            
Sbjct: 82  DEGYDLPPLMFNSDELEAVMMGLRHVQVRGDEQLIRTASDVIAKIAAVLSPEARDEFIEA 141

Query: 122 ------------PSGALSFWRLIQAITGRRRVTLIAEGR----RCERLAPCRLLIHQQTW 165
                       P+  +    + QAI G+ ++ L  E          + P  L    Q+ 
Sbjct: 142 PLYAPDFGVEPIPTARIELKDVRQAIRGQHKLRLTYEDAQGEMSERLIWPLSLTFFAQSR 201

Query: 166 YLVAEH--EGHIAVFTLDEIHLIQPLQETFR 194
            +VA          F  D +  ++ L+E +R
Sbjct: 202 MIVAWCELRKDFRAFRTDRVTHMEVLEERYR 232


>UniRef50_Q82JJ5 Putative DeoR-family transcriptional regulator n=2 Tax=Streptomyces
           RepID=Q82JJ5_STRAW
          Length = 318

 Score =  104 bits (258), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 67/231 (29%), Gaps = 27/231 (11%)

Query: 11  LAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLM-----YLDLEYQSGYCR 65
            + RL  I+  L     +   +LA    VSVRT+ RD           Y +     G   
Sbjct: 2   KSDRLLSILLLLQTRGRVPAHELATRLEVSVRTIYRDIEALSASGVPVYAERGRHGGIEL 61

Query: 66  LRTAGSEMQMVPDVLI----------FAHRSGLAGLFPGLDRRLVNALL-------MCDE 108
           L    +++  +                    GL        R+++ AL            
Sbjct: 62  LAGFRTDVTGLTADESRALFILAAQGAHAALGLDAALGSALRKVMTALPAPHRPAAEATS 121

Query: 109 SPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGR-----RCERLAPCRLLIHQQ 163
              ++        P   +    L  A+   RR+ L              + P  L+    
Sbjct: 122 RRVLVDATRWKGGPQPVVDLETLQDAVFADRRLRLRYRHGGDAQPHTYTVDPYGLVSKAG 181

Query: 164 TWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPH 214
            WYLVA+      +F  D +     L +  RR   +       V  + +  
Sbjct: 182 VWYLVADRRAKPQLFRADRVRSATLLADPVRRRPGVELADAWEVLRRQVEE 232


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.307    0.127    0.349 

Lambda     K      H
   0.267   0.0396    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,311,925,149
Number of Sequences: 3077464
Number of extensions: 53067587
Number of successful extensions: 237351
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 1140
Number of HSP's that attempted gapping in prelim test: 233643
Number of HSP's gapped (non-prelim): 2623
length of query: 233
length of database: 1,040,396,356
effective HSP length: 125
effective length of query: 108
effective length of database: 655,713,356
effective search space: 70817042448
effective search space used: 70817042448
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 91 (39.7 bits)
