12/01/2012 05:20:30 : INFO  : Run start: Thu Jan 12 05:20:29 GMT 2012
12/01/2012 05:20:35 : INFO  : Initialised job
12/01/2012 05:20:36 : INFO  : Renaming log file 'phyre2_20120112_052028.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/phyre_20120112_052028.log'
12/01/2012 05:20:37 : INFO  : Initialised job:
Sequence
>batch____
MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTLRRDFRERLMYLDLEYQ
SGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNALLMCDESPCVIAPANPVP
SPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLIHQQTWYLVAEHEGHIAVFTL
DEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFIQHSLLTFVPADSPPE

12/01/2012 05:20:38 : INFO  : Checked sequence
12/01/2012 05:20:41 : INFO  : Finding homologues with PSI-BLAST
12/01/2012 05:20:42 : INFO  : PSI-BLAST 3 iterations
12/01/2012 05:22:01 : INFO  : PSI-BLAST 5 iterations
12/01/2012 05:23:37 : INFO  : Finished PSI-BLAST
12/01/2012 05:23:39 : INFO  : Running Buildali to generate a3m file
12/01/2012 05:29:36 : INFO  : Converting to HMM
12/01/2012 05:29:38 : INFO  : Calibrating HMM
12/01/2012 05:29:49 : INFO  : Searching HMM database
12/01/2012 05:34:04 : INFO  : Finished buildali
12/01/2012 05:34:05 : INFO  : Predicting secondary structure
12/01/2012 05:34:12 : INFO  : Predicted secondary structure (PSI-Pred)
12/01/2012 05:34:14 : INFO  : Predicting Disordered regions
12/01/2012 05:34:17 : INFO  : Predicted Disorder (Disopred)
12/01/2012 05:34:19 : INFO  : Running memsat_svm check
12/01/2012 05:37:09 : INFO  : Globular protein
12/01/2012 05:37:10 : INFO  : Predicted Transmembrane (memsat_svm) ID 'dd655207642ded7a'
12/01/2012 05:37:12 : INFO  : Initialising fold library search
12/01/2012 05:37:15 : INFO  : Initialised search input
12/01/2012 05:37:17 : INFO  : Building Ensemble models
12/01/2012 05:37:20 : INFO  : Building hh.d1j5ya1.model.1.pdb
12/01/2012 05:37:36 : INFO  : Building hh.d1biaa1.model.2.pdb
12/01/2012 05:37:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/hh.d1biaa1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/d1biaa1.2.pdb
12/01/2012 05:37:52 : INFO  : Building hh.c1j5yA_.model.3.pdb
12/01/2012 05:38:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/hh.c1j5yA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/c1j5yA_.3.pdb
12/01/2012 05:38:07 : INFO  : Building hh.d1aoya_.model.4.pdb
12/01/2012 05:38:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/hh.d1aoya_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/d1aoya_.4.pdb
12/01/2012 05:38:22 : INFO  : Building hh.c3ereD_.model.5.pdb
12/01/2012 05:38:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/hh.c3ereD_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/c3ereD_.14.pdb
12/01/2012 05:38:39 : INFO  : Building hh.c3c7jA_.model.6.pdb
12/01/2012 05:38:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/hh.c3c7jA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/dd655207642ded7a/c3c7jA_.27.pdb
12/01/2012 05:38:55 : INFO  : Building d1j5ya1.1.pdb
12/01/2012 05:39:08 : INFO  : Building d1biaa1.2.pdb
12/01/2012 05:39:21 : INFO  : Building c1j5yA_.3.pdb
12/01/2012 05:39:35 : INFO  : Building d1aoya_.4.pdb
12/01/2012 05:39:49 : INFO  : Building d1stza1.5.pdb
12/01/2012 05:40:04 : INFO  : Building c2ewnA_.6.pdb
12/01/2012 05:40:20 : INFO  : Building d1mkma1.7.pdb
12/01/2012 05:40:33 : INFO  : Building c3by6C_.8.pdb
12/01/2012 05:40:48 : INFO  : Building c2l4aA_.9.pdb
12/01/2012 05:41:02 : INFO  : Building d1b4aa1.10.pdb
12/01/2012 05:41:17 : INFO  : Building c1b4aA_.11.pdb
12/01/2012 05:41:32 : INFO  : Building d2p5ka1.12.pdb
12/01/2012 05:41:46 : INFO  : Building c3eetA_.13.pdb
12/01/2012 05:42:01 : INFO  : Building c3ereD_.14.pdb
12/01/2012 05:42:14 : INFO  : Building d2cg4a1.15.pdb
12/01/2012 05:42:28 : INFO  : Building c2y75F_.16.pdb
12/01/2012 05:42:40 : INFO  : Building c2g7uB_.17.pdb
12/01/2012 05:42:53 : INFO  : Building c3lmmA_.18.pdb
12/01/2012 05:43:07 : INFO  : Building c1mkmA_.19.pdb
12/01/2012 05:43:20 : INFO  : Building d2hs5a1.20.pdb
12/01/2012 05:44:59 : INFO  : Finished HH model building
12/01/2012 05:45:01 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
12/01/2012 05:46:54 : INFO  : html domain output complete ID 'dd655207642ded7a'
12/01/2012 05:54:14 : INFO  : Run end  : Thu Jan 12 05:54:13 GMT 2012
