Phyre 2 alignment of P52133 with c3ereD_

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Job Description | P52133
Confidence | 95.38% | Date | Thu Jan 5 12:05:38 GMT 2012
Rank | 14 | Aligned Residues | 81
% Identity | 21% | Template | c3ereD_
PDB info | PDB header:dna binding protein/dna | Chain: D: PDB Molecule:arginine repressor; | PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
Resolution | 2.50 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . |  |  |  |  |  | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . |  | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | V | R | L | S | L | I | I | S | R | L | V | A | G | E | T | L | S | V | R | K | L | A | A | E | F | . | . | . | . | . | G | V | S | V | R | T | L | R | R | D | F | R | E | R | L | M | Y | L | D | L | E | Y | Q | S | G | Y | . | C | R | L | R | T | A | G | S | E | M | Q | M | V | P | D | V | L | I | F | A | H | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | G | R | Q | A | R | I | V | A | I | L | S | S | A | Q | V | R | S | Q | N | E | L | A | A | L | L | A | A | E | G | I | E | V | T | Q | A | T | L | S | R | D | L | E | E | L | G | A | V | K | L | R | G | A | D | G | G | T | G | I | Y | V | V | P | E | D | G | S | P | V | R | G | V | S | G | G | T | D | R | M | A
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  | T | T | T | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | .
|  | 86 | . | . | . | 90 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |
Query Sequence |  | S | G | L | A | G | L | F
Query Conservation |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |
Template Sequence |  | R | L | L | G | E | L | L
Template Known Secondary structure |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |
|  | 99 | 100 | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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