Phyre 2 Results for P76155

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Email | l.a.kelley@imperial.ac.uk
Description | P76155
Date | Thu Jan 5 12:19:47 GMT 2012
Unique Job ID | dc2f8108a470b279

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2kz6A_
Top template information
PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2
Confidence and coverage
Confidence: | 97.5% | Coverage: | 34%
64 residues ( 34% of your sequence) have been modelled with 97.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
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Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | F | R | M | S | E | Q | P | R | T | I | K | I | Y | N | L | L | A | G | T | N | E | F | I | G | E | G | D | A | Y | I | P | P | H | T | G | L | P | A | N | S | T | D | I | A | P | P | D | I | P | A | G | F | V | A | V | F | N | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | D | E | S | S | W | H | L | V | E | D | H | R | G | K | T | V | Y | D | V | A | S | G | D | A | L | F | I | S | E | L | G | P | L | P | E | N | V | T | W | L | S | P | E | G | E | F | Q | K | W | N | G | T | A | W | V | K | D | T | E | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | K | L | F | R | I | R | E | A | E | E | T | K | N | N | L | M | Q | V | A | S | E | H | I | A | P | L | Q | D | A | A | D | L | E | I | A | T | E | E | E | I | S | L | L | E | A | W | K | K | Y | R | V | L | L | N | R | V | D | T | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | .
Sequence |  | T | A | Q | D | I | E | W | P | A | L | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2kz6A_ |

### PDB 2kz6 chain A

Region: 119 - 191
Aligned: 64
Modelled: 73
Confidence: 97.5%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2

Phyre2
2 |
| d1jofa_ |

### PDB 1jof chain A

Region: 3 - 96
Aligned: 89
Modelled: 90
Confidence: 46.0%
Identity: 17%
Fold: 7-bladed beta-propeller
Superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
Family: 3-carboxy-cis,cis-mucoante lactonizing enzyme

Phyre2
3 |
| c1gk6B_ |

### PDB 1gk6 chain B

Region: 120 - 175
Aligned: 50
Modelled: 56
Confidence: 39.6%
Identity: 20%
PDB header:vimentin
Chain: B: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b)

Phyre2
4 |
| c2xv5A_ |

### PDB 2xv5 chain A

Region: 121 - 175
Aligned: 49
Modelled: 55
Confidence: 37.5%
Identity: 24%
PDB header:structural protein
Chain: A: PDB Molecule:lamin-a/c;
PDBTitle: human lamin a coil 2b fragment

Phyre2
5 |
| c1rfoC_ |

### PDB 1rfo chain C

Region: 47 - 68
Aligned: 20
Modelled: 20
Confidence: 34.5%
Identity: 25%
PDB header:viral protein
Chain: C: PDB Molecule:whisker antigen control protein;
PDBTitle: trimeric foldon of the t4 phagehead fibritin

Phyre2
6 |
| c2kt9A_ |

### PDB 2kt9 chain A

Region: 102 - 162
Aligned: 61
Modelled: 61
Confidence: 33.7%
Identity: 20%
PDB header:ribosomal protein
Chain: A: PDB Molecule:probable 30s ribosomal protein psrp-3;
PDBTitle: solution nmr structure of probable 30s ribosomal protein2 psrp-3 (ycf65-like protein) from synechocystis sp. (strain3 pcc 6803), northeast structural genomics consortium target4 target sgr46

Phyre2
7 |
| c3o0rC_ |

### PDB 3o0r chain C

Region: 156 - 184
Aligned: 26
Modelled: 26
Confidence: 32.6%
Identity: 15%
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment

Phyre2
8 |
| c1x8yA_ |

### PDB 1x8y chain A

Region: 120 - 175
Aligned: 50
Modelled: 56
Confidence: 27.0%
Identity: 24%
PDB header:structural protein
Chain: A: PDB Molecule:lamin a/c;
PDBTitle: human lamin coil 2b

Phyre2
9 |
| c1v1hB_ |

### PDB 1v1h chain B

Region: 47 - 68
Aligned: 20
Modelled: 22
Confidence: 25.7%
Identity: 25%
PDB header:adenovirus
Chain: B: PDB Molecule:fibritin, fiber protein;
PDBTitle: adenovirus fibre shaft sequence n-terminally fused to the2 bacteriophage t4 fibritin foldon trimerisation motif with3 a short linker

Phyre2
10 |
| c2jxwA_ |

### PDB 2jxw chain A

Region: 13 - 85
Aligned: 53
Modelled: 55
Confidence: 25.2%
Identity: 21%
PDB header:formin binding protein
Chain: A: PDB Molecule:ww domain-binding protein 4;
PDBTitle: solution structure of the tandem ww domains of fbp21

Phyre2
11 |
| c1k6nH_ |

### PDB 1k6n chain H

Region: 2 - 90
Aligned: 89
Modelled: 89
Confidence: 24.3%
Identity: 13%
PDB header:photosynthesis
Chain: H: PDB Molecule:photosynthetic reaction center h subunit;
PDBTitle: e(l212)a,d(l213)a double mutant structure of photosynthetic reaction2 center from rhodobacter sphaeroides

Phyre2
12 |
| c1gk4A_ |

### PDB 1gk4 chain A

Region: 120 - 175
Aligned: 50
Modelled: 56
Confidence: 23.7%
Identity: 26%
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 2b fragment (cys2)

Phyre2
13 |
| c1ox3A_ |

### PDB 1ox3 chain A

Region: 47 - 68
Aligned: 20
Modelled: 22
Confidence: 23.4%
Identity: 25%
PDB header:chaperone
Chain: A: PDB Molecule:fibritin;
PDBTitle: crystal structure of mini-fibritin

Phyre2
14 |
| c3movB_ |

### PDB 3mov chain B

Region: 120 - 175
Aligned: 50
Modelled: 56
Confidence: 22.3%
Identity: 22%
PDB header:structural protein
Chain: B: PDB Molecule:lamin-b1;
PDBTitle: crystal structure of human lamin-b1 coil 2 segment

Phyre2
15 |
| d1rzhh1 |

### PDB 1rzh chain H domain 1

Region: 2 - 90
Aligned: 89
Modelled: 89
Confidence: 21.9%
Identity: 13%
Fold: PRC-barrel domain
Superfamily: PRC-barrel domain
Family: Photosynthetic reaction centre, H-chain, cytoplasmic domain

Phyre2
16 |
| c1avyA_ |

### PDB 1avy chain A

Region: 47 - 68
Aligned: 20
Modelled: 20
Confidence: 21.2%
Identity: 25%
PDB header:coiled coil
Chain: A: PDB Molecule:fibritin;
PDBTitle: fibritin deletion mutant m (bacteriophage t4)

Phyre2
17 |
| c2ov2O_ |

### PDB 2ov2 chain O

Region: 17 - 26
Aligned: 10
Modelled: 10
Confidence: 15.8%
Identity: 20%
PDB header:protein binding/transferase
Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4;
PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4)

Phyre2
18 |
| c2odbB_ |

### PDB 2odb chain B

Region: 17 - 26
Aligned: 10
Modelled: 10
Confidence: 14.1%
Identity: 20%
PDB header:protein binding
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6;
PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6)

Phyre2
19 |
| d2rm0w1 |

### PDB 2rm0 chain W domain 1

Region: 62 - 97
Aligned: 31
Modelled: 36
Confidence: 13.8%
Identity: 26%
Fold: WW domain-like
Superfamily: WW domain
Family: WW domain

Phyre2
20 |
| d2dk1a1 |

### PDB 2dk1 chain A domain 1

Region: 63 - 97
Aligned: 30
Modelled: 35
Confidence: 12.5%
Identity: 30%
Fold: WW domain-like
Superfamily: WW domain
Family: WW domain

Phyre2
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25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
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34 |
35 |
36 |
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45 |
46 |
47 |
48 |
49 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2kz6A_ |
|  | 97.5 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein cv0426 from chromobacterium violaceum,2 northeast structural genomics consortium (nesg) target cvt2
2 | d1jofa_ |
|  | 46.0 | 17 | Fold:7-bladed beta-propeller Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme Family:3-carboxy-cis,cis-mucoante lactonizing enzyme
3 | c1gk6B_ |
|  | 39.6 | 20 | PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b)
4 | c2xv5A_ |
|  | 37.5 | 24 | PDB header:structural protein Chain: A: PDB Molecule:lamin-a/c; PDBTitle: human lamin a coil 2b fragment
5 | c1rfoC_ |
|  | 34.5 | 25 | PDB header:viral protein Chain: C: PDB Molecule:whisker antigen control protein; PDBTitle: trimeric foldon of the t4 phagehead fibritin
6 | c2kt9A_ |
|  | 33.7 | 20 | PDB header:ribosomal protein Chain: A: PDB Molecule:probable 30s ribosomal protein psrp-3; PDBTitle: solution nmr structure of probable 30s ribosomal protein2 psrp-3 (ycf65-like protein) from synechocystis sp. (strain3 pcc 6803), northeast structural genomics consortium target4 target sgr46
7 | c3o0rC_ |
|  | 32.6 | 15 | PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
8 | c1x8yA_ |
|  | 27.0 | 24 | PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b
9 | c1v1hB_ |
|  | 25.7 | 25 | PDB header:adenovirus Chain: B: PDB Molecule:fibritin, fiber protein; PDBTitle: adenovirus fibre shaft sequence n-terminally fused to the2 bacteriophage t4 fibritin foldon trimerisation motif with3 a short linker
10 | c2jxwA_ |
|  | 25.2 | 21 | PDB header:formin binding protein Chain: A: PDB Molecule:ww domain-binding protein 4; PDBTitle: solution structure of the tandem ww domains of fbp21
11 | c1k6nH_ |
|  | 24.3 | 13 | PDB header:photosynthesis Chain: H: PDB Molecule:photosynthetic reaction center h subunit; PDBTitle: e(l212)a,d(l213)a double mutant structure of photosynthetic reaction2 center from rhodobacter sphaeroides
12 | c1gk4A_ |
|  | 23.7 | 26 | PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2)
13 | c1ox3A_ |
|  | 23.4 | 25 | PDB header:chaperone Chain: A: PDB Molecule:fibritin; PDBTitle: crystal structure of mini-fibritin
14 | c3movB_ |
|  | 22.3 | 22 | PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment
15 | d1rzhh1 |
|  | 21.9 | 13 | Fold:PRC-barrel domain Superfamily:PRC-barrel domain Family:Photosynthetic reaction centre, H-chain, cytoplasmic domain
16 | c1avyA_ |
|  | 21.2 | 25 | PDB header:coiled coil Chain: A: PDB Molecule:fibritin; PDBTitle: fibritin deletion mutant m (bacteriophage t4)
17 | c2ov2O_ |
|  | 15.8 | 20 | PDB header:protein binding/transferase Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4)
18 | c2odbB_ |
|  | 14.1 | 20 | PDB header:protein binding Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6; PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6)
19 | d2rm0w1 |
|  | 13.8 | 26 | Fold:WW domain-like Superfamily:WW domain Family:WW domain
20 | d2dk1a1 |
|  | 12.5 | 30 | Fold:WW domain-like Superfamily:WW domain Family:WW domain
21 | c2diiA_ |
| not modelled | 12.3 | 23 | PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit
22 | d2diia1 |
| not modelled | 12.2 | 23 | Fold:BSD domain-like Superfamily:BSD domain-like Family:BSD domain
23 | c2v43A_ |
| not modelled | 12.1 | 20 | PDB header:regulator Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb; PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
24 | d1ln1a_ |
| not modelled | 11.3 | 17 | Fold:TBP-like Superfamily:Bet v1-like Family:STAR domain
25 | c2dk7A_ |
| not modelled | 10.5 | 13 | PDB header:transcription Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of ww domain in transcription elongation2 regulator 1
26 | c2ghsA_ |
| not modelled | 10.5 | 14 | PDB header:calcium-binding protein Chain: A: PDB Molecule:agr_c_1268p; PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution
27 | d2ghsa1 |
| not modelled | 10.5 | 14 | Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like
28 | d2oa5a1 |
| not modelled | 10.3 | 23 | Fold:BLRF2-like Superfamily:BLRF2-like Family:BLRF2-like
29 | d1x4ta1 |
| not modelled | 9.3 | 22 | Fold:Long alpha-hairpin Superfamily:ISY1 domain-like Family:ISY1 N-terminal domain-like
30 | c1e0aB_ |
| not modelled | 8.5 | 50 | PDB header:signalling protein Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase
31 | c1w18A_ |
| not modelled | 8.4 | 19 | PDB header:transferase Chain: A: PDB Molecule:levansucrase; PDBTitle: crystal structure of levansucrase from gluconacetobacter2 diazotrophicus
32 | d1o6wa1 |
| not modelled | 8.3 | 26 | Fold:WW domain-like Superfamily:WW domain Family:WW domain
33 | d1ll7a2 |
| not modelled | 7.9 | 17 | Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain
34 | c1zr7A_ |
| not modelled | 7.3 | 26 | PDB header:signaling protein Chain: A: PDB Molecule:huntingtin-interacting protein hypa/fbp11; PDBTitle: solution structure of the first ww domain of fbp11
35 | c2c7hA_ |
| not modelled | 7.2 | 29 | PDB header:ubiquitin-like protein Chain: A: PDB Molecule:retinoblastoma-binding protein 6, isoform 3; PDBTitle: solution nmr structure of the dwnn domain from human rbbp6
36 | d1w9pa2 |
| not modelled | 6.8 | 25 | Fold:FKBP-like Superfamily:Chitinase insertion domain Family:Chitinase insertion domain
37 | c3nmbA_ |
| not modelled | 6.4 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of a putative sugar hydrolase (bacova_03189) from2 bacteroides ovatus at 2.40 a resolution
38 | c1f3mB_ |
| not modelled | 6.4 | 50 | PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha; PDBTitle: crystal structure of human serine/threonine kinase pak1
39 | d1pcna1 |
| not modelled | 6.3 | 33 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Colipase-like Family:Colipase-like
40 | c2ysiA_ |
| not modelled | 6.3 | 23 | PDB header:protein binding Chain: A: PDB Molecule:transcription elongation regulator 1; PDBTitle: solution structure of the first ww domain from the mouse2 transcription elongation regulator 1, transcription factor3 ca150
41 | c2jz8A_ |
| not modelled | 6.2 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bh09830; PDBTitle: solution nmr structure of bh09830 from bartonella henselae2 modeled with one zn+2 bound. northeast structural genomics3 consortium target bnr55
42 | c2dk1A_ |
| not modelled | 6.2 | 26 | PDB header:gene regulation Chain: A: PDB Molecule:ww domain-binding protein 4; PDBTitle: solution structure of ww domain in ww domain binding2 protein 4 (wbp-4)
43 | c3ok8A_ |
| not modelled | 5.9 | 6 | PDB header:protein binding Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein PDBTitle: i-bar of pinkbar
44 | d1wi9a_ |
| not modelled | 5.6 | 53 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif)
45 | d2paja1 |
| not modelled | 5.6 | 15 | Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:SAH/MTA deaminase-like
46 | d1ocya_ |
| not modelled | 5.5 | 14 | Fold:Receptor-binding domain of short tail fibre protein gp12 Superfamily:Receptor-binding domain of short tail fibre protein gp12 Family:Receptor-binding domain of short tail fibre protein gp12
47 | c1aa0A_ |
| not modelled | 5.4 | 25 | PDB header:attachment protein Chain: A: PDB Molecule:fibritin; PDBTitle: fibritin deletion mutant e (bacteriophage t4)
48 | c2h47F_ |
| not modelled | 5.2 | 17 | PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
49 | d1j8ra_ |
| not modelled | 5.1 | 31 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:PapG adhesin receptor-binding domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0