Phyre 2 alignment of P0ABU9 with c1erfA_

Return to main results | Retrieve Phyre Job Id

Job Description | P0ABU9
Confidence | 3.14% | Date | Thu Jan 5 11:16:27 GMT 2012
Rank | 73 | Aligned Residues | 9
% Identity | 22% | Template | c1erfA_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:transmembrane glycoprotein; | PDBTitle: conformational mapping of the n-terminal fusion peptide of2 hiv-1 gp41 using 13c-enhanced fourier transform infrared3 spectroscopy (ftir)
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 137 | . | . | 140 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | P | Y | I | G | L | F | G | T
Query Conservation |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | L | F | L | G | F | L | G | A
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |
|  | 6 | . | . | . | 10 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions