BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (109 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A7ZNH9 UPF0265 protein yeeX n=106 Tax=Gammaproteobacter... 218 7e-56 UniRef50_A7MJN1 UPF0265 protein ESA_01212 n=29 Tax=Bacteria RepI... 199 2e-50 UniRef50_A5UCU0 UPF0265 protein CGSHiEE_06200 n=131 Tax=Bacteria... 125 5e-28 UniRef50_A1SY66 UPF0265 protein Ping_2721 n=14 Tax=Bacteria RepI... 111 9e-24 >UniRef50_A7ZNH9 UPF0265 protein yeeX n=106 Tax=Gammaproteobacteria RepID=YEEX_ECO24 Length = 109 Score = 218 bits (554), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 109/109 (100%), Positives = 109/109 (100%) Query: 1 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA 60 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA Sbjct: 1 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA 60 Query: 61 IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK 109 IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK Sbjct: 61 IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK 109 >UniRef50_A7MJN1 UPF0265 protein ESA_01212 n=29 Tax=Bacteria RepID=Y1212_ENTS8 Length = 112 Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/109 (91%), Positives = 104/109 (95%) Query: 1 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA 60 ME +KPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA Sbjct: 1 MENSKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA 60 Query: 61 IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK 109 IQGIIASMK DYEDRVDDYIIKNAE+SKERR+ISKKLKAMGE+K E K Sbjct: 61 IQGIIASMKSDYEDRVDDYIIKNAEISKERREISKKLKAMGELKVHEPK 109 >UniRef50_A5UCU0 UPF0265 protein CGSHiEE_06200 n=131 Tax=Bacteria RepID=Y6200_HAEIE Length = 114 Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 62/110 (56%), Positives = 85/110 (77%), Gaps = 5/110 (4%) Query: 3 TTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQ 62 K SFQDVLE+VR++R KN+++R+++D +KIRDNQKR+LLLDNL+ YI+ M++ ++ Sbjct: 4 VNKQSFQDVLEYVRMYRLKNRIKRDMEDNNRKIRDNQKRILLLDNLNQYIRDDMTIAEVR 63 Query: 63 GIIASMKGDYEDRVDDYIIKNAELSKERRDISKKL----KAMGE-MKNGE 107 GII SM+ DYE RVDDY I+NAELSK+RR+ S K+ KA E +KN E Sbjct: 64 GIIESMRDDYESRVDDYTIRNAELSKQRREASTKMKEQKKAHAELLKNAE 113 >UniRef50_A1SY66 UPF0265 protein Ping_2721 n=14 Tax=Bacteria RepID=Y2721_PSYIN Length = 100 Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 58/93 (62%), Positives = 73/93 (78%) Query: 8 FQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIAS 67 ++LE VR RRKNKL+REI D EKK+RDN KRV LL NL +YIKP MS E I+ II + Sbjct: 1 MDNLLELVRNTRRKNKLKREILDNEKKVRDNTKRVDLLSNLLEYIKPNMSPEDIKCIIEN 60 Query: 68 MKGDYEDRVDDYIIKNAELSKERRDISKKLKAM 100 M+ DYEDRVD++IIK AELSKERR+++KK+ + Sbjct: 61 MRDDYEDRVDEHIIKGAELSKERREMNKKISSF 93 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7ZNH9 UPF0265 protein yeeX n=106 Tax=Gammaproteobacter... 141 7e-33 UniRef50_A7MJN1 UPF0265 protein ESA_01212 n=29 Tax=Bacteria RepI... 139 2e-32 UniRef50_A5UCU0 UPF0265 protein CGSHiEE_06200 n=131 Tax=Bacteria... 105 3e-22 UniRef50_A1SY66 UPF0265 protein Ping_2721 n=14 Tax=Bacteria RepI... 103 3e-21 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_A7ZNH9 UPF0265 protein yeeX n=106 Tax=Gammaproteobacteria RepID=YEEX_ECO24 Length = 109 Score = 141 bits (355), Expect = 7e-33, Method: Composition-based stats. Identities = 109/109 (100%), Positives = 109/109 (100%) Query: 1 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA 60 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA Sbjct: 1 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA 60 Query: 61 IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK 109 IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK Sbjct: 61 IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK 109 >UniRef50_A7MJN1 UPF0265 protein ESA_01212 n=29 Tax=Bacteria RepID=Y1212_ENTS8 Length = 112 Score = 139 bits (351), Expect = 2e-32, Method: Composition-based stats. Identities = 100/109 (91%), Positives = 104/109 (95%) Query: 1 METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA 60 ME +KPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA Sbjct: 1 MENSKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEA 60 Query: 61 IQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK 109 IQGIIASMK DYEDRVDDYIIKNAE+SKERR+ISKKLKAMGE+K E K Sbjct: 61 IQGIIASMKSDYEDRVDDYIIKNAEISKERREISKKLKAMGELKVHEPK 109 >UniRef50_A5UCU0 UPF0265 protein CGSHiEE_06200 n=131 Tax=Bacteria RepID=Y6200_HAEIE Length = 114 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 57/96 (59%), Positives = 79/96 (82%) Query: 3 TTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQ 62 K SFQDVLE+VR++R KN+++R+++D +KIRDNQKR+LLLDNL+ YI+ M++ ++ Sbjct: 4 VNKQSFQDVLEYVRMYRLKNRIKRDMEDNNRKIRDNQKRILLLDNLNQYIRDDMTIAEVR 63 Query: 63 GIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLK 98 GII SM+ DYE RVDDY I+NAELSK+RR+ S K+K Sbjct: 64 GIIESMRDDYESRVDDYTIRNAELSKQRREASTKMK 99 >UniRef50_A1SY66 UPF0265 protein Ping_2721 n=14 Tax=Bacteria RepID=Y2721_PSYIN Length = 100 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 58/93 (62%), Positives = 73/93 (78%) Query: 8 FQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIAS 67 ++LE VR RRKNKL+REI D EKK+RDN KRV LL NL +YIKP MS E I+ II + Sbjct: 1 MDNLLELVRNTRRKNKLKREILDNEKKVRDNTKRVDLLSNLLEYIKPNMSPEDIKCIIEN 60 Query: 68 MKGDYEDRVDDYIIKNAELSKERRDISKKLKAM 100 M+ DYEDRVD++IIK AELSKERR+++KK+ + Sbjct: 61 MRDDYEDRVDEHIIKGAELSKERREMNKKISSF 93 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.140 0.354 Lambda K H 0.267 0.0416 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 359,014,686 Number of Sequences: 3077464 Number of extensions: 12310294 Number of successful extensions: 57369 Number of sequences better than 1.0e-01: 12 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 57355 Number of HSP's gapped (non-prelim): 25 length of query: 109 length of database: 1,040,396,356 effective HSP length: 77 effective length of query: 32 effective length of database: 803,431,628 effective search space: 25709812096 effective search space used: 25709812096 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 87 (38.1 bits)