BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (69 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0TBK7 Uncharacterized protein yibT n=97 Tax=Enterobact...   123   2e-27
UniRef50_C6DG43 DNA polymerase III, theta subunit n=6 Tax=Entero...    41   0.010

>UniRef50_Q0TBK7 Uncharacterized protein yibT n=97 Tax=Enterobacteriaceae
          RepID=YIBT_ECOL5
          Length = 69

 Score =  123 bits (309), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/67 (98%), Positives = 67/67 (100%)

Query: 1  MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRRL 60
          MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYR+L
Sbjct: 1  MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRQL 60

Query: 61 YRPKQVE 67
          YRPKQVE
Sbjct: 61 YRPKQVE 67


>UniRef50_C6DG43 DNA polymerase III, theta subunit n=6 Tax=Enterobacteriaceae
          RepID=C6DG43_PECCP
          Length = 65

 Score = 41.1 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 13 DKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRRLYRPKQ 65
          ++  DF AS+ AF E  +K    + I   IP E  P + +RL +YR +YRP+Q
Sbjct: 13 EQYTDFAASTIAFMESQEKKIDADEISRRIPQEKRPFFNERLGHYRDIYRPQQ 65


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q0TBK7 Uncharacterized protein yibT n=97 Tax=Enterobact...   123   2e-27

Sequences not found previously or not previously below threshold:

UniRef50_C6DG43 DNA polymerase III, theta subunit n=6 Tax=Entero...    41   0.010


CONVERGED!
>UniRef50_Q0TBK7 Uncharacterized protein yibT n=97 Tax=Enterobacteriaceae
          RepID=YIBT_ECOL5
          Length = 69

 Score =  123 bits (309), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/67 (98%), Positives = 67/67 (100%)

Query: 1  MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRRL 60
          MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYR+L
Sbjct: 1  MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRQL 60

Query: 61 YRPKQVE 67
          YRPKQVE
Sbjct: 61 YRPKQVE 67


>UniRef50_C6DG43 DNA polymerase III, theta subunit n=6 Tax=Enterobacteriaceae
          RepID=C6DG43_PECCP
          Length = 65

 Score = 41.1 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 13 DKAVDFMASSQAFREYLKKLPPRNAIPSGIPDESVPLYLQRLEYYRRLYRPKQ 65
          ++  DF AS+ AF E  +K    + I   IP E  P + +RL +YR +YRP+Q
Sbjct: 13 EQYTDFAASTIAFMESQEKKIDADEISRRIPQEKRPFFNERLGHYRDIYRPQQ 65


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.309    0.143    0.445 

Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,246,062
Number of Sequences: 3077464
Number of extensions: 9643932
Number of successful extensions: 24720
Number of sequences better than 1.0e-01: 2
Number of HSP's better than  0.1 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24716
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 1,040,396,356
effective HSP length: 41
effective length of query: 28
effective length of database: 914,220,332
effective search space: 25598169296
effective search space used: 25598169296
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 87 (38.1 bits)