12 c2jogA_ Probab=99.92   E-value=1.5e-24  Score=144.63  Aligned_columns=197  Identities=22%

Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHH------CCCCEEEECC
Q ss_conf             3113037743378799993555899999999998399888879999887528985746778763------1698899749
Q batch____         3 STRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFFPKIDLLISVGDNIDRGPESLDVLRLL------NQPWFTSVKG   76 (218)
Q Consensus         3 ~~~~~~~~~~~~~ri~vIsDiHG~~~~l~~~l~~~~~~~~~d~lv~lGDivD~G~~~~~~l~~~------~~~~~~~l~G   76 (218)
                      +|.+.+++.    +++|||||||++.+|.+++++.+. +..+.+||+||+||||+.+.|++.++      .+..++.++|
T Consensus        55 ep~l~~i~~----pi~VvGDiHG~~~dL~~i~~~~g~-p~~~~~vFLGDyVDRG~~s~Evl~ll~~lK~~~P~~v~lLRG  129 (327)
T c2jogA_          55 EKNLLDIDA----PVTVCGDIHGQFFDLMKLFEVGGS-PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRG  129 (327)
T ss_dssp             SCSEEEECS----CEEEECCCTTCHHHHHHHHHHHCC-TTSSCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCC
T ss_pred             CCCEEEECC----CEEEEECCCCCHHHHHHHHHHHCC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             895599459----879992765699999999998188-843608994666488874399999999867637987999608


Q ss_pred             CCEEEEECCCCCCCCCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCCHHHH-------
Q ss_conf             8188762344575420032020377774110125778999999873921799860795099982888810020-------
Q batch____        77 NHEAMALEAFETGDGNMWLASGGDWFFDLNDSEQQEAIDLLLKFHHLPHIIEITNDNIKYAIAHADYPGSEYL-------  149 (218)
Q Consensus        77 Nhe~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~g~~~~~~~-------  149 (218)
                      |||.+..........+....+           ...........+..+|..+.+   +.+++++|||+++....       
T Consensus       130 NHE~~~~~~~~gf~~e~~~ky-----------~~~~~~~~~~~f~~LPlaaii---~~~i~~vHGGis~~~~~l~~i~~i  195 (327)
T c2jogA_         130 NHECRHLTEYFTFKQECKIKY-----------SERVYDACMDAFDCLPLAALM---NQQFLCVHGGLSPEINTLDDIRKL  195 (327)
T ss_dssp             TTSSHHHHHHSSHHHHHHHHS-----------CHHHHHHHHHHHTTSCSEEEE---TTTEEECSSCCBTTBSSHHHHHTS
T ss_pred             CCCCCCCCCCCCHHHHHHHHH-----------CHHHHHHHHHHHHHCCEEEEE---CCEEEEEECCCCCCCCCHHHHHHC
T ss_conf             733322111455699999773-----------889999999999637313645---672799744788877667888746


Q ss_pred             -----CCCCCCHHHHHHCCHH-----------------------HHHCHHHHHCCCCCCCEEEECCCCCCCCEEE---CC
Q ss_conf             -----1013899895424323-----------------------3101011200137998999845887440977---78
Q batch____       150 -----FGKEIAESELLWPVDR-----------------------VQKSLNGELQQINGADYFIFGHMMFDNIQTF---AN  198 (218)
Q Consensus       150 -----~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~vV~GHt~~~~~~~~---~~  198 (218)
                           ........+++|.+..                       |.......+.+..+.+.+|.||..+.+..+.   +.
T Consensus       196 ~R~~~~~~~~~~~~llWsdp~~~~~~~~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iIR~He~~~~G~~~~~~~k  275 (327)
T c2jogA_         196 DRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQ  275 (327)
T ss_dssp             CCSSCCCSSSHHHHHHHCEECTTSSSCSSCCSEEECTTTTSSEEECHHHHHHHHHHHTCSEEEECSSCCTTSEEECCBCS
T ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCC
T ss_conf             88778731001345441012366675454557626689983577099999999988399499970314322124632898


Q ss_pred             ------EEEEECCCCCCCEE----EEEEEC
Q ss_conf             ------99971798338746----788969
Q batch____       199 ------QIYIDTGSPNSGRL----SFYKIK  218 (218)
Q Consensus       199 ------~~~iD~G~~~gG~l----~~~~l~  218 (218)
                            ++-|=+-+-|.|..    +.+.++
T Consensus       276 ~~~~~~~iTvFSa~~Y~~~~~N~gavl~i~  305 (327)
T c2jogA_         276 TTGFPSLITIFSAPNYLDVYNNKAAVLKYE  305 (327)
T ss_dssp             SSSSBSEEEECCCCSGGGTSCCCEEEEEEE
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf             677760899951885136589707999982