Phyre 2 alignment of P37614 with c1afoB_

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Job Description | P37614
Confidence | 31.16% | Date | Thu Jan 5 11:55:50 GMT 2012
Rank | 11 | Aligned Residues | 20
% Identity | 40% | Template | c1afoB_
PDB info | PDB header:integral membrane protein | Chain: B: PDB Molecule:glycophorin a; | PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | V | H | P | F | P | R | P | L | N | I | F | V | N | V | A | L | I | F | T | V | L | M | H | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | A | H | H | F | S | E | P | E | . | . | . | . | . | I | T | L | I | I | F | G | V | M | A | G
Template Known Secondary structure |  |  | S |  |  | S |  |  | S |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 64 | . | . | . | . | . | 70 | . | . |  |  |  |  |  | . | . | . | . | . | . | . | 80 | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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