Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	I	I	T	C	F	K	L	V	P	E	E	Q	D	I	V	V	T	P	E	Y	T	L	N	F	D	N	A	D	A	K	I	S	Q	F	D	L	N	A	I	E	A	A	S	Q	L	A	T	D	D	D	E	I	A	A	L	T	V	G
Secondary structure
SS confidence
Disorder		?																		?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	S	L	L	Q	N	S	K	V	R	K	D	V	L	S	R	G	P	H	S	L	Y	L	V	Q	D	A	Q	L	E	H	A	L	P	L	D	T	A	K	A	L	A	A	A	I	E	K	I	G	F	D	L	L	I	F	G	E	G	S	G
Secondary structure
SS confidence
Disorder					?	?																																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	L	Y	A	Q	Q	V	G	L	L	V	G	E	I	L	Q	L	P	V	I	N	A	V	S	A	I	Q	R	Q	G	N	T	L	V	I	E	R	T	L	E	D	D	V	E	V	I	E	L	S	V	P	A	V	L	C	V	T	S	D	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	V	P	R	I	P	S	M	K	A	I	L	G	A	G	K	K	P	V	N	Q	W	Q	A	S	D	I	D	W	S	Q	S	A	P	L	A	E	L	V	G	I	R	V	P	P	Q	T	E	R	K	H	I	I	I	D	N	D	S	P	E
Secondary structure
SS confidence
Disorder																	?												?	?	?	?	?	?	?	?	?						?	?	?	?	?	?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.
Sequence		A	I	A	E	L	A	E	H	L	K	K	A	L	N
Secondary structure
SS confidence
Disorder														?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1efv chain B Region: 1 - 250 Aligned: 245 Modelled: 250 Confidence: 100.0% Identity: 24% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 PDB 1efp chain B Region: 1 - 245 Aligned: 240 Modelled: 243 Confidence: 100.0% Identity: 27% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 PDB 3cls chain C domain 1 Region: 1 - 252 Aligned: 245 Modelled: 245 Confidence: 100.0% Identity: 23% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 PDB 1o94 chain C Region: 1 - 224 Aligned: 222 Modelled: 222 Confidence: 100.0% Identity: 25% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 PDB 1o94 chain D Region: 24 - 209 Aligned: 179 Modelled: 186 Confidence: 100.0% Identity: 15% PDB header:electron transport Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein Phyre2 PDB 3cls chain D domain 1 Region: 33 - 213 Aligned: 174 Modelled: 181 Confidence: 100.0% Identity: 16% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 PDB 3ih5 chain A Region: 33 - 206 Aligned: 163 Modelled: 174 Confidence: 99.9% Identity: 16% PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: crystal structure of electron transfer flavoprotein alpha-2 subunit from bacteroides thetaiotaomicron Phyre2 PDB 1efv chain A domain 1 Region: 24 - 187 Aligned: 153 Modelled: 164 Confidence: 99.9% Identity: 17% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 PDB 1t9g chain R Region: 20 - 187 Aligned: 157 Modelled: 165 Confidence: 99.9% Identity: 17% PDB header:oxidoreductase, electron transport Chain: R: PDB Molecule:electron transfer flavoprotein alpha-subunit, PDBTitle: structure of the human mcad:etf complex Phyre2 PDB 1efp chain C Region: 34 - 249 Aligned: 205 Modelled: 216 Confidence: 99.9% Identity: 15% PDB header:electron transport Chain: C: PDB Molecule:protein (electron transfer flavoprotein); PDBTitle: electron transfer flavoprotein (etf) from paracoccus2 denitrificans Phyre2 PDB 1efp chain A domain 1 Region: 24 - 187 Aligned: 150 Modelled: 161 Confidence: 99.8% Identity: 17% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: ETFP subunits Phyre2 PDB 3fet chain A Region: 31 - 187 Aligned: 138 Modelled: 148 Confidence: 99.7% Identity: 11% PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein subunit alpha related PDBTitle: crystal structure of the electron transfer flavoprotein subunit alpha2 related protein ta0212 from thermoplasma acidophilum Phyre2 PDB 1tq8 chain A Region: 29 - 140 Aligned: 109 Modelled: 112 Confidence: 95.9% Identity: 17% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: Universal stress protein-like Phyre2 PDB 2ixd chain B Region: 45 - 117 Aligned: 73 Modelled: 73 Confidence: 95.2% Identity: 10% PDB header:hydrolase Chain: B: PDB Molecule:lmbe-related protein; PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus Phyre2 PDB 1uan chain A Region: 45 - 115 Aligned: 71 Modelled: 71 Confidence: 95.0% Identity: 11% Fold: LmbE-like Superfamily: LmbE-like Family: LmbE-like Phyre2 PDB 3fg9 chain B Region: 34 - 140 Aligned: 99 Modelled: 101 Confidence: 94.2% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 Phyre2 PDB 2pfs chain A Region: 34 - 140 Aligned: 91 Modelled: 107 Confidence: 94.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea Phyre2 PDB 3mt0 chain A Region: 34 - 135 Aligned: 98 Modelled: 102 Confidence: 93.6% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 Phyre2 PDB 3fh0 chain A Region: 33 - 140 Aligned: 104 Modelled: 108 Confidence: 93.6% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase Phyre2 PDB 1q74 chain A Region: 45 - 115 Aligned: 71 Modelled: 71 Confidence: 92.4% Identity: 15% Fold: LmbE-like Superfamily: LmbE-like Family: LmbE-like Phyre2 1 d1efvb_ 2 d1efpb_ 3 d3clsc1 4 d1o94c_ 5 c1o94D_ 6 d3clsd1 7 c3ih5A_ 8 d1efva1 9 c1t9gR_ 10 c1efpC_ 11 d1efpa1 12 c3fetA_ 13 d1tq8a_ 14 c2ixdB_ 15 d1uana_ 16 c3fg9B_ 17 c2pfsA_ 18 c3mt0A_ 19 c3fh0A_ 20 d1q74a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1efvb_ 100.0 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 2 d1efpb_ 100.0 27 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 3 d3clsc1 100.0 23 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 4 d1o94c_ 100.0 25 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 5 c1o94D_ 100.0 15 PDB header:electron transport Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein 6 d3clsd1 100.0 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 7 c3ih5A_ 99.9 16 PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein alpha-subunit; PDBTitle: crystal structure of electron transfer flavoprotein alpha-2 subunit from bacteroides thetaiotaomicron 8 d1efva1 99.9 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 9 c1t9gR_ 99.9 17 PDB header:oxidoreductase, electron transport Chain: R: PDB Molecule:electron transfer flavoprotein alpha-subunit, PDBTitle: structure of the human mcad:etf complex 10 c1efpC_ 99.9 15 PDB header:electron transport Chain: C: PDB Molecule:protein (electron transfer flavoprotein); PDBTitle: electron transfer flavoprotein (etf) from paracoccus2 denitrificans 11 d1efpa1 99.8 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 12 c3fetA_ 99.7 11 PDB header:electron transport Chain: A: PDB Molecule:electron transfer flavoprotein subunit alpha related PDBTitle: crystal structure of the electron transfer flavoprotein subunit alpha2 related protein ta0212 from thermoplasma acidophilum 13 d1tq8a_ 95.9 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 14 c2ixdB_ 95.2 10 PDB header:hydrolase Chain: B: PDB Molecule:lmbe-related protein; PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus 15 d1uana_ 95.0 11 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 16 c3fg9B_ 94.2 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of universal stress protein uspa family; PDBTitle: the crystal structure of an universal stress protein uspa2 family protein from lactobacillus plantarum wcfs1 17 c2pfsA_ 94.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 18 c3mt0A_ 93.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1789; PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1 19 c3fh0A_ 93.6 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative universal stress protein kpn_01444; PDBTitle: crystal structure of putative universal stress protein kpn_01444 -2 atpase 20 d1q74a_ 92.4 15 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 21 d2z3va1 not modelled 92.0 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 22 d1q77a_ not modelled 90.8 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 23 c1q7tA_ not modelled 89.9 17 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein rv1170; PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis 24 c3lpnB_ not modelled 89.6 14 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase2 from thermoplasma volcanium in complex with an atp analog (ampcpp). 25 c3hgmD_ not modelled 89.5 17 PDB header:signaling protein Chain: D: PDB Molecule:universal stress protein tead; PDBTitle: universal stress protein tead from the trap transporter2 teaabc of halomonas elongata 26 c3loqA_ not modelled 88.6 14 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: the crystal structure of a universal stress protein from2 archaeoglobus fulgidus dsm 4304 27 d1miob_ not modelled 88.2 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 28 d1m1na_ not modelled 84.8 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 29 d1m1nb_ not modelled 83.6 17 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 30 c3dloC_ not modelled 83.5 9 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:universal stress protein; PDBTitle: structure of universal stress protein from archaeoglobus fulgidus 31 c1u9yD_ not modelled 83.2 12 PDB header:transferase Chain: D: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of phosphoribosyl diphosphate synthase2 from methanocaldococcus jannaschii 32 d1qh8b_ not modelled 82.1 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 33 d1ozha1 not modelled 81.9 11 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 34 c3dfiA_ not modelled 80.8 12 PDB header:hydrolase Chain: A: PDB Molecule:pseudoaglycone deacetylase dbv21; PDBTitle: the crystal structure of antimicrobial reagent a40926 pseudoaglycone2 deacetylase dbv21 35 c1dkrB_ not modelled 80.3 12 PDB header:transferase Chain: B: PDB Molecule:phosphoribosyl pyrophosphate synthetase; PDBTitle: crystal structures of bacillus subtilis phosphoribosylpyrophosphate2 synthetase: molecular basis of allosteric inhibition and activation. 36 c3pdiG_ not modelled 77.6 12 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 37 d2gm3a1 not modelled 77.4 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 38 d1f6da_ not modelled 77.2 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 39 d2ji7a1 not modelled 76.9 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 40 d2iyva1 not modelled 76.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 41 c2dy0A_ not modelled 75.0 13 PDB header:transferase Chain: A: PDB Molecule:adenine phosphoribosyltransferase; PDBTitle: crystal structure of project jw0458 from escherichia coli 42 d1qh8a_ not modelled 74.7 16 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 43 d1a9xa3 not modelled 73.5 16 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 44 d1a9xa4 not modelled 73.1 19 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 45 d1jmva_ not modelled 72.8 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 46 c2ebdB_ not modelled 71.9 16 PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: crystal structure of 3-oxoacyl-[acyl-carrier-protein] synthase iii2 from aquifex aeolicus vf5 47 d1o57a2 not modelled 71.8 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 48 c3s3tD_ not modelled 71.4 17 PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum 49 d1rkba_ not modelled 70.4 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 50 d1l1qa_ not modelled 69.6 12 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 51 d1y0ba1 not modelled 69.3 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 52 d1v4va_ not modelled 69.2 21 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 53 d1kaga_ not modelled 69.2 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 54 c3il5D_ not modelled 68.9 11 PDB header:transferase Chain: D: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase 3; PDBTitle: structure of e. faecalis fabh in complex with 2-({4-bromo-3-2 [(diethylamino)sulfonyl]benzoyl}amino)benzoic acid 55 d1iowa1 not modelled 68.0 20 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 56 c2c4kD_ not modelled 67.1 11 PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) 57 d1g2qa_ not modelled 67.0 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 58 d1o6ca_ not modelled 66.8 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 59 c2qv5A_ not modelled 66.6 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 60 c3efhB_ not modelled 65.5 11 PDB header:transferase Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1; PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1 61 c3olqA_ not modelled 64.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein e; PDBTitle: the crystal structure of a universal stress protein e from proteus2 mirabilis hi4320 62 c2ip4A_ not modelled 63.5 20 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8 63 c1zuiA_ not modelled 61.6 21 PDB header:transferase Chain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase 64 c3ab8B_ not modelled 61.6 20 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein ttha0350; PDBTitle: crystal structure of the hypothetical tandem-type universal stress2 protein ttha0350 complexed with atps. 65 c2dumD_ not modelled 61.5 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0823; PDBTitle: crystal structure of hypothetical protein, ph0823 66 d2djia1 not modelled 61.0 15 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 67 d2ez9a1 not modelled 60.0 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 68 c3ot5D_ not modelled 59.9 10 PDB header:isomerase Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes 69 d1ybha1 not modelled 59.5 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 70 c1kbiB_ not modelled 58.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome b2; PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme 71 c1o57A_ not modelled 58.8 14 PDB header:dna binding protein Chain: A: PDB Molecule:pur operon repressor; PDBTitle: crystal structure of the purine operon repressor of2 bacillus subtilis 72 c2nz2A_ not modelled 58.5 15 PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of human argininosuccinate synthase in complex with2 aspartate and citrulline 73 d2ptza1 not modelled 58.1 9 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 74 d1viaa_ not modelled 57.6 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 75 d1e6ca_ not modelled 57.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 76 c3dfmA_ not modelled 57.5 18 PDB header:hydrolase Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2; PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2 77 c1w96B_ not modelled 57.0 10 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase; PDBTitle: crystal structure of biotin carboxylase domain of acetyl-2 coenzyme a carboxylase from saccharomyces cerevisiae in3 complex with soraphen a 78 c3s29C_ not modelled 56.8 19 PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. 79 c3op1A_ not modelled 56.6 20 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 80 d1vcfa1 not modelled 56.5 13 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 81 d1w0ma_ not modelled 56.4 14 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 82 c2pt5D_ not modelled 56.3 22 PDB header:transferase Chain: D: PDB Molecule:shikimate kinase; PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5 83 d1jlja_ not modelled 55.3 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 84 c3t61A_ not modelled 54.8 18 PDB header:transferase Chain: A: PDB Molecule:gluconokinase; PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021 85 d1s3ga1 not modelled 54.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 86 c3fdiA_ not modelled 54.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560. 87 d2cdna1 not modelled 53.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 88 d1qb7a_ not modelled 53.2 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 89 c1kh2D_ not modelled 52.4 19 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 90 d1ovma1 not modelled 52.4 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 91 d1zpda1 not modelled 52.3 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 92 c2v4wB_ not modelled 52.0 11 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa synthase, PDBTitle: crystal structure of human mitochondrial 3-hydroxy-3-2 methylglutaryl-coenzyme a synthase 2 (hmgcs2) 93 c3jyfB_ not modelled 51.7 18 PDB header:hydrolase Chain: B: PDB Molecule:2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- PDBTitle: the crystal structure of a 2,3-cyclic nucleotide 2-2 phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor3 protein from klebsiella pneumoniae subsp. pneumoniae mgh 78578 94 c2h92C_ not modelled 51.2 11 PDB header:transferase Chain: C: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of staphylococcus aureus cytidine2 monophosphate kinase in complex with cytidine-5'-3 monophosphate 95 c2vu2D_ not modelled 50.8 11 PDB header:transferase Chain: D: PDB Molecule:acetyl-coa acetyltransferase; PDBTitle: biosynthetic thiolase from z. ramigera. complex with s-2 pantetheine-11-pivalate. 96 c3gwaA_ not modelled 50.8 13 PDB header:transferase Chain: A: PDB Molecule:3-oxoacyl-(acyl-carrier-protein) synthase iii; PDBTitle: 1.6 angstrom crystal structure of 3-oxoacyl-(acyl-carrier-protein)2 synthase iii 97 c3gmtB_ not modelled 50.8 18 PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei 98 d1zina1 not modelled 50.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 99 c2eu8B_ not modelled 50.3 21 PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of a thermostable mutant of bacillus2 subtilis adenylate kinase (q199r) 100 c3hdtB_ not modelled 50.1 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940 101 c1m6vE_ not modelled 50.0 16 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 102 c2bwjC_ not modelled 49.7 11 PDB header:transferase Chain: C: PDB Molecule:adenylate kinase 5; PDBTitle: structure of adenylate kinase 5 103 c2grjH_ not modelled 49.6 14 PDB header:transferase Chain: H: PDB Molecule:dephospho-coa kinase; PDBTitle: crystal structure of dephospho-coa kinase (ec 2.7.1.24)2 (dephosphocoenzyme a kinase) (tm1387) from thermotoga maritima at3 2.60 a resolution 104 d1di6a_ not modelled 49.5 10 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 105 c2ar7A_ not modelled 49.5 14 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 4; PDBTitle: crystal structure of human adenylate kinase 4, ak4 106 d1e4va1 not modelled 49.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 107 d1vcha1 not modelled 48.7 22 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 108 c1ankA_ not modelled 48.4 14 PDB header:transferase(phosphotransferase) Chain: A: PDB Molecule:adenylate kinase; PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp 109 c3be4A_ not modelled 48.1 9 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of cryptosporidium parvum adenylate kinase cgd5_3360 110 d1mzva_ not modelled 48.0 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 111 d1zaka1 not modelled 48.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 112 d1rqba2 not modelled 47.9 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:HMGL-like 113 c2rhmD_ not modelled 47.9 14 PDB header:unknown function Chain: D: PDB Molecule:putative kinase; PDBTitle: crystal structure of a putative kinase (caur_3907) from chloroflexus2 aurantiacus j-10-fl at 1.70 a resolution 114 d1knqa_ not modelled 47.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Gluconate kinase 115 d1zn7a1 not modelled 47.6 20 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 116 d2ihta1 not modelled 47.5 23 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 117 c3r8cB_ not modelled 47.0 11 PDB header:transferase Chain: B: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cytidylate kinase (cmk) from mycobacterium2 abscessus 118 c2vliB_ not modelled 46.8 14 PDB header:transferase Chain: B: PDB Molecule:antibiotic resistance protein; PDBTitle: structure of deinococcus radiodurans tunicamycin resistance2 protein 119 c1s3gA_ not modelled 46.2 14 PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from bacillus2 globisporus 120 c3trfB_ not modelled 45.8 11 PDB header:transferase Chain: B: PDB Molecule:shikimate kinase; PDBTitle: structure of a shikimate kinase (arok) from coxiella burnetii

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0